Query 017525
Match_columns 370
No_of_seqs 167 out of 2525
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 15:50:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017525.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017525hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fmz_A Internalin; leucine ric 99.9 1.3E-26 4.4E-31 211.2 20.4 273 2-329 53-327 (347)
2 3o6n_A APL1; leucine-rich repe 99.9 3E-26 1E-30 212.1 17.9 274 13-331 43-336 (390)
3 4fmz_A Internalin; leucine ric 99.9 1.8E-25 6E-30 203.7 21.8 268 2-323 75-344 (347)
4 3o6n_A APL1; leucine-rich repe 99.9 1.7E-25 5.9E-30 207.0 19.3 258 36-330 42-312 (390)
5 3oja_B Anopheles plasmodium-re 99.9 8.3E-26 2.8E-30 220.4 17.3 284 3-323 61-356 (597)
6 2id5_A Lingo-1, leucine rich r 99.9 1.1E-24 3.9E-29 206.9 23.7 285 2-331 20-314 (477)
7 2id5_A Lingo-1, leucine rich r 99.9 2.9E-25 9.9E-30 211.0 19.5 282 2-323 41-331 (477)
8 3vq2_A TLR4, TOLL-like recepto 99.9 6.1E-25 2.1E-29 214.9 20.2 120 2-123 41-167 (606)
9 2z7x_B TOLL-like receptor 1, v 99.9 2.9E-24 9.8E-29 206.3 24.3 116 2-122 9-128 (520)
10 3v47_A TOLL-like receptor 5B a 99.9 4.3E-25 1.5E-29 208.5 18.1 113 196-332 275-390 (455)
11 1o6v_A Internalin A; bacterial 99.9 1.5E-24 5E-29 205.4 21.7 107 2-115 55-163 (466)
12 3t6q_A CD180 antigen; protein- 99.9 1.3E-24 4.3E-29 212.7 19.8 102 16-118 34-139 (606)
13 3v47_A TOLL-like receptor 5B a 99.9 9.4E-25 3.2E-29 206.2 18.1 296 3-323 40-406 (455)
14 4eco_A Uncharacterized protein 99.9 2.5E-25 8.5E-30 218.4 14.3 307 8-351 239-601 (636)
15 4ecn_A Leucine-rich repeat pro 99.9 1.5E-24 5.3E-29 217.2 20.0 305 8-350 481-840 (876)
16 3oja_B Anopheles plasmodium-re 99.9 1.5E-24 5E-29 211.6 19.1 279 12-331 48-342 (597)
17 2ft3_A Biglycan; proteoglycan, 99.9 1.1E-24 3.8E-29 197.2 16.5 96 16-118 34-133 (332)
18 4ecn_A Leucine-rich repeat pro 99.9 7.9E-25 2.7E-29 219.4 15.9 235 2-262 434-708 (876)
19 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.4E-23 4.8E-28 203.4 24.1 116 2-122 40-159 (562)
20 2z81_A CD282 antigen, TOLL-lik 99.9 2.7E-24 9.3E-29 207.8 18.7 107 12-118 47-158 (549)
21 4eco_A Uncharacterized protein 99.9 4.2E-25 1.4E-29 216.8 13.0 239 2-263 192-469 (636)
22 1o6v_A Internalin A; bacterial 99.9 7E-24 2.4E-28 200.8 20.9 233 2-262 77-320 (466)
23 3bz5_A Internalin-J, INLJ; leu 99.9 4.9E-24 1.7E-28 200.8 19.2 255 12-305 39-303 (457)
24 1xku_A Decorin; proteoglycan, 99.9 9.8E-24 3.3E-28 190.8 19.7 230 3-262 41-274 (330)
25 2z63_A TOLL-like receptor 4, v 99.9 6.5E-24 2.2E-28 206.0 19.8 120 2-123 37-163 (570)
26 3vq2_A TLR4, TOLL-like recepto 99.9 1E-23 3.4E-28 206.3 20.8 294 2-323 20-410 (606)
27 3t6q_A CD180 antigen; protein- 99.9 1.1E-23 3.9E-28 205.9 19.7 274 16-329 255-539 (606)
28 4fcg_A Uncharacterized protein 99.9 6.6E-24 2.3E-28 191.5 16.1 79 38-118 80-160 (328)
29 1ogq_A PGIP-2, polygalacturona 99.9 2.2E-24 7.4E-29 193.6 11.8 249 15-330 50-309 (313)
30 1ziw_A TOLL-like receptor 3; i 99.9 1.1E-22 3.8E-27 201.5 24.2 235 2-262 13-283 (680)
31 3rgz_A Protein brassinosteroid 99.9 1.8E-23 6.3E-28 209.6 17.7 235 3-264 279-551 (768)
32 2z80_A TOLL-like receptor 2, v 99.9 2.4E-23 8.3E-28 190.0 16.8 262 2-323 40-312 (353)
33 3bz5_A Internalin-J, INLJ; leu 99.9 3.9E-23 1.3E-27 194.7 18.1 246 35-330 38-304 (457)
34 2z81_A CD282 antigen, TOLL-lik 99.9 5E-23 1.7E-27 198.9 19.3 142 2-156 14-160 (549)
35 1ziw_A TOLL-like receptor 3; i 99.9 1.1E-22 3.6E-27 201.7 20.5 240 2-262 34-307 (680)
36 4fcg_A Uncharacterized protein 99.9 5.4E-23 1.9E-27 185.6 16.5 237 59-353 80-317 (328)
37 2z66_A Variable lymphocyte rec 99.9 4.3E-23 1.5E-27 184.6 15.1 211 2-262 16-234 (306)
38 3rgz_A Protein brassinosteroid 99.9 5.6E-23 1.9E-27 206.0 17.5 300 12-332 315-724 (768)
39 2z63_A TOLL-like receptor 4, v 99.9 1.2E-22 3.9E-27 197.2 18.1 310 2-343 61-524 (570)
40 3j0a_A TOLL-like receptor 5; m 99.9 2.1E-22 7.2E-27 203.9 20.5 142 2-156 13-160 (844)
41 3j0a_A TOLL-like receptor 5; m 99.9 3.5E-22 1.2E-26 202.3 21.6 293 2-330 33-379 (844)
42 3o53_A Protein LRIM1, AGAP0063 99.9 1.9E-23 6.4E-28 187.8 10.7 267 12-326 31-300 (317)
43 2z7x_B TOLL-like receptor 1, v 99.9 1.9E-22 6.6E-27 193.6 18.0 305 2-343 30-474 (520)
44 2ft3_A Biglycan; proteoglycan, 99.9 2.8E-22 9.5E-27 181.4 18.0 284 2-323 42-331 (332)
45 3zyj_A Leucine-rich repeat-con 99.9 2.6E-22 8.8E-27 188.6 18.2 233 3-263 53-291 (440)
46 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 4.7E-22 1.6E-26 192.7 20.3 294 2-331 61-491 (562)
47 1ogq_A PGIP-2, polygalacturona 99.9 9.1E-23 3.1E-27 182.9 13.0 234 3-303 60-306 (313)
48 4g8a_A TOLL-like receptor 4; l 99.9 4.4E-22 1.5E-26 195.4 18.9 119 2-122 61-186 (635)
49 3zyi_A Leucine-rich repeat-con 99.9 5.7E-22 1.9E-26 187.0 18.1 232 3-262 64-301 (452)
50 1xku_A Decorin; proteoglycan, 99.9 2E-21 6.8E-26 175.6 20.0 123 16-157 32-158 (330)
51 1ozn_A Reticulon 4 receptor; N 99.9 4.2E-22 1.4E-26 176.3 14.6 211 3-264 21-238 (285)
52 2z80_A TOLL-like receptor 2, v 99.9 7.8E-22 2.7E-26 180.0 15.3 147 2-160 61-214 (353)
53 3g06_A SSPH2 (leucine-rich rep 99.9 1.7E-20 5.8E-25 182.1 21.2 245 2-323 49-295 (622)
54 3o53_A Protein LRIM1, AGAP0063 99.9 1.1E-21 3.8E-26 176.2 11.9 262 15-327 10-277 (317)
55 4g8a_A TOLL-like receptor 4; l 99.9 4.5E-20 1.5E-24 181.1 23.3 117 4-123 42-162 (635)
56 3zyj_A Leucine-rich repeat-con 99.8 2E-20 6.7E-25 175.8 17.5 240 16-299 44-290 (440)
57 3zyi_A Leucine-rich repeat-con 99.8 1.9E-20 6.5E-25 176.5 17.4 240 16-299 55-301 (452)
58 1jl5_A Outer protein YOPM; leu 99.8 7.7E-20 2.7E-24 172.0 20.6 170 3-211 81-252 (454)
59 1jl5_A Outer protein YOPM; leu 99.8 3.3E-20 1.1E-24 174.5 17.7 170 3-211 121-292 (454)
60 3oja_A Leucine-rich immune mol 99.8 7E-21 2.4E-25 180.8 13.0 238 12-300 31-274 (487)
61 2z66_A Variable lymphocyte rec 99.8 2.3E-20 7.9E-25 166.8 13.9 213 2-264 37-261 (306)
62 1wwl_A Monocyte differentiatio 99.8 2.5E-21 8.5E-26 173.6 6.6 241 13-298 41-306 (312)
63 1h6u_A Internalin H; cell adhe 99.8 5.2E-20 1.8E-24 164.6 15.0 190 12-263 38-229 (308)
64 1ozn_A Reticulon 4 receptor; N 99.8 6.6E-20 2.3E-24 162.1 15.3 218 17-299 13-236 (285)
65 2z62_A TOLL-like receptor 4, v 99.8 6.8E-20 2.3E-24 161.3 15.1 213 3-263 17-236 (276)
66 3rfs_A Internalin B, repeat mo 99.8 1.3E-19 4.3E-24 159.2 16.4 222 15-309 19-243 (272)
67 3g06_A SSPH2 (leucine-rich rep 99.8 1.2E-19 4.1E-24 176.2 17.6 250 15-344 40-291 (622)
68 1wwl_A Monocyte differentiatio 99.8 5.5E-21 1.9E-25 171.3 6.7 247 35-323 39-307 (312)
69 3oja_A Leucine-rich immune mol 99.8 1.5E-19 5E-24 171.7 14.6 186 38-262 33-225 (487)
70 2o6q_A Variable lymphocyte rec 99.8 7.7E-19 2.6E-23 154.0 16.4 196 15-263 16-217 (270)
71 1p9a_G Platelet glycoprotein I 99.8 8.6E-19 3E-23 155.2 15.0 197 12-263 7-207 (290)
72 2o6q_A Variable lymphocyte rec 99.8 2.3E-18 7.7E-23 151.0 16.0 190 2-242 25-218 (270)
73 1z7x_W Ribonuclease inhibitor; 99.8 6.3E-20 2.1E-24 173.3 6.0 293 12-323 53-409 (461)
74 2xwt_C Thyrotropin receptor; s 99.8 6.6E-19 2.2E-23 151.6 11.8 202 27-300 23-238 (239)
75 4ay9_X Follicle-stimulating ho 99.8 1.5E-18 5.1E-23 158.0 13.4 232 2-262 18-257 (350)
76 1p9a_G Platelet glycoprotein I 99.8 3.1E-18 1E-22 151.6 14.5 188 2-242 19-208 (290)
77 1h6t_A Internalin B; cell adhe 99.8 2.1E-18 7.1E-23 152.8 13.3 187 15-263 24-212 (291)
78 1z7x_W Ribonuclease inhibitor; 99.8 1.3E-20 4.3E-25 178.1 -1.3 237 12-263 25-296 (461)
79 3rfs_A Internalin B, repeat mo 99.8 2.4E-19 8.2E-24 157.4 6.7 225 39-336 19-246 (272)
80 2xwt_C Thyrotropin receptor; s 99.8 4E-18 1.4E-22 146.6 13.0 206 51-325 25-239 (239)
81 2ca6_A RAN GTPase-activating p 99.8 1.5E-19 5E-24 166.9 3.5 95 191-299 211-314 (386)
82 2z62_A TOLL-like receptor 4, v 99.8 7.1E-18 2.4E-22 148.3 13.1 192 2-242 37-237 (276)
83 2ast_B S-phase kinase-associat 99.7 1.6E-18 5.6E-23 156.7 8.4 219 17-298 49-282 (336)
84 1h6u_A Internalin H; cell adhe 99.7 2.9E-17 9.8E-22 146.7 16.3 183 2-245 50-233 (308)
85 3goz_A Leucine-rich repeat-con 99.7 3.1E-18 1E-22 156.7 9.8 241 12-298 19-294 (362)
86 1m9s_A Internalin B; cell inva 99.7 1E-17 3.6E-22 162.3 13.8 190 13-263 19-209 (605)
87 4glp_A Monocyte differentiatio 99.7 3.8E-18 1.3E-22 152.6 9.2 136 14-160 63-213 (310)
88 3ogk_B Coronatine-insensitive 99.7 3.4E-18 1.1E-22 166.6 9.5 286 13-328 162-528 (592)
89 4ay9_X Follicle-stimulating ho 99.7 5E-17 1.7E-21 147.8 15.1 234 18-320 12-254 (350)
90 3ogk_B Coronatine-insensitive 99.7 9.6E-18 3.3E-22 163.4 11.0 271 12-321 189-547 (592)
91 2ca6_A RAN GTPase-activating p 99.7 2.3E-18 7.7E-23 158.9 4.9 248 26-323 20-314 (386)
92 3m19_A Variable lymphocyte rec 99.7 1.6E-16 5.3E-21 137.7 16.1 103 15-122 14-120 (251)
93 2ast_B S-phase kinase-associat 99.7 9E-18 3.1E-22 151.9 7.9 197 15-261 70-282 (336)
94 1h6t_A Internalin B; cell adhe 99.7 1E-17 3.5E-22 148.4 7.8 185 41-299 26-211 (291)
95 3m19_A Variable lymphocyte rec 99.7 2.4E-16 8.2E-21 136.5 15.6 173 39-263 14-191 (251)
96 1xeu_A Internalin C; cellular 99.7 1.9E-17 6.6E-22 144.3 7.4 101 10-118 14-116 (263)
97 4glp_A Monocyte differentiatio 99.7 4.2E-17 1.4E-21 145.8 9.4 225 38-322 63-304 (310)
98 2p1m_B Transport inhibitor res 99.7 3.1E-17 1.1E-21 159.8 9.0 39 285-324 478-518 (594)
99 3goz_A Leucine-rich repeat-con 99.7 1.4E-17 4.9E-22 152.2 6.0 258 19-323 2-295 (362)
100 1m9s_A Internalin B; cell inva 99.7 2.8E-17 9.4E-22 159.4 8.1 187 39-299 21-208 (605)
101 2p1m_B Transport inhibitor res 99.6 7.4E-17 2.5E-21 157.1 5.7 106 12-118 63-194 (594)
102 1xeu_A Internalin C; cellular 99.6 2.4E-15 8E-20 131.1 13.9 131 2-154 28-160 (263)
103 4ezg_A Putative uncharacterize 99.6 1.4E-15 4.7E-20 126.7 11.5 83 36-122 41-125 (197)
104 2v9t_B SLIT homolog 2 protein 99.6 3.7E-15 1.3E-19 126.3 12.5 143 2-158 20-166 (220)
105 3cvr_A Invasion plasmid antige 99.6 4.9E-15 1.7E-19 142.2 14.8 185 16-268 60-247 (571)
106 4ezg_A Putative uncharacterize 99.6 5.1E-15 1.8E-19 123.2 11.1 148 12-180 41-190 (197)
107 3e6j_A Variable lymphocyte rec 99.6 1.7E-14 5.7E-19 123.0 12.8 141 2-157 28-172 (229)
108 2o6s_A Variable lymphocyte rec 99.6 2.7E-14 9.2E-19 119.9 13.1 88 192-308 96-185 (208)
109 2o6s_A Variable lymphocyte rec 99.6 4.6E-14 1.6E-18 118.4 13.9 140 2-155 16-159 (208)
110 2v70_A SLIT-2, SLIT homolog 2 99.6 3.3E-14 1.1E-18 120.4 12.7 142 2-157 20-166 (220)
111 3cvr_A Invasion plasmid antige 99.5 4.7E-14 1.6E-18 135.4 14.2 175 2-243 68-244 (571)
112 2v9t_B SLIT homolog 2 protein 99.5 6.8E-14 2.3E-18 118.4 13.2 97 18-118 14-114 (220)
113 3e6j_A Variable lymphocyte rec 99.5 1.1E-13 3.9E-18 117.8 12.5 119 2-122 49-172 (229)
114 2xot_A Amphoterin-induced prot 99.5 1.2E-13 4.2E-18 125.9 11.2 146 2-158 27-177 (361)
115 1dce_A Protein (RAB geranylger 99.5 2.3E-16 8E-21 151.9 -7.7 203 57-318 346-566 (567)
116 2ell_A Acidic leucine-rich nuc 99.5 6.2E-14 2.1E-18 113.5 7.4 135 12-158 21-161 (168)
117 2xot_A Amphoterin-induced prot 99.5 2E-13 6.9E-18 124.5 10.0 143 2-157 48-202 (361)
118 2v70_A SLIT-2, SLIT homolog 2 99.4 4.3E-13 1.5E-17 113.5 11.2 119 2-122 41-166 (220)
119 2wfh_A SLIT homolog 2 protein 99.4 1.1E-12 3.7E-17 108.6 12.8 100 18-122 13-115 (193)
120 2ell_A Acidic leucine-rich nuc 99.4 2.1E-13 7.2E-18 110.3 8.2 120 2-125 33-163 (168)
121 1a9n_A U2A', U2A'; complex (nu 99.4 2.3E-13 7.9E-18 111.0 8.2 139 9-160 13-156 (176)
122 1w8a_A SLIT protein; signaling 99.4 9.3E-13 3.2E-17 109.0 11.3 114 3-118 18-136 (192)
123 2je0_A Acidic leucine-rich nuc 99.4 1.6E-13 5.6E-18 108.6 5.9 128 12-151 14-147 (149)
124 2o6r_A Variable lymphocyte rec 99.4 2E-12 6.9E-17 105.4 12.4 114 3-118 17-134 (177)
125 2je0_A Acidic leucine-rich nuc 99.4 5.2E-13 1.8E-17 105.7 8.4 112 2-116 26-148 (149)
126 2wfh_A SLIT homolog 2 protein 99.4 3.1E-12 1.1E-16 105.8 11.7 116 2-121 19-138 (193)
127 1w8a_A SLIT protein; signaling 99.4 2.7E-12 9.1E-17 106.2 10.0 124 18-157 11-139 (192)
128 3sb4_A Hypothetical leucine ri 99.4 4.6E-12 1.6E-16 114.0 12.3 98 195-317 225-326 (329)
129 4fdw_A Leucine rich hypothetic 99.3 7.1E-11 2.4E-15 108.8 19.3 98 16-117 136-235 (401)
130 4b8c_D Glucose-repressible alc 99.3 3.2E-12 1.1E-16 126.8 10.4 107 12-122 221-329 (727)
131 1dce_A Protein (RAB geranylger 99.3 5.4E-12 1.9E-16 121.5 11.7 103 16-124 442-548 (567)
132 1a9n_A U2A', U2A'; complex (nu 99.3 1.5E-12 5.1E-17 106.1 6.6 117 2-122 28-153 (176)
133 2o6r_A Variable lymphocyte rec 99.3 2.5E-11 8.5E-16 98.9 11.2 125 17-157 9-137 (177)
134 1ds9_A Outer arm dynein; leuci 99.3 1.4E-13 4.8E-18 114.5 -2.8 128 16-159 24-155 (198)
135 4b8c_D Glucose-repressible alc 99.2 9.1E-12 3.1E-16 123.6 7.7 113 30-157 215-329 (727)
136 2r9u_A Variable lymphocyte rec 99.2 7.6E-11 2.6E-15 95.7 10.0 101 17-122 14-118 (174)
137 3g39_A Variable lymphocyte rec 99.2 7.6E-11 2.6E-15 95.3 9.9 102 16-122 10-115 (170)
138 4fdw_A Leucine rich hypothetic 99.1 1.7E-09 5.8E-14 99.6 17.7 134 3-155 144-282 (401)
139 1ds9_A Outer arm dynein; leuci 99.1 3.6E-12 1.2E-16 105.9 -1.1 103 12-118 45-150 (198)
140 2r9u_A Variable lymphocyte rec 99.1 3E-10 1E-14 92.1 9.7 92 2-94 21-116 (174)
141 3g39_A Variable lymphocyte rec 99.1 3.7E-10 1.3E-14 91.3 9.5 93 2-95 18-114 (170)
142 3sb4_A Hypothetical leucine ri 99.1 7.3E-10 2.5E-14 99.5 10.7 192 14-257 100-327 (329)
143 3un9_A NLR family member X1; l 98.9 2.8E-10 9.5E-15 103.8 2.4 23 192-214 235-257 (372)
144 4fs7_A Uncharacterized protein 98.9 2E-08 6.8E-13 92.5 14.5 109 5-117 59-194 (394)
145 2ifg_A High affinity nerve gro 98.9 4E-09 1.4E-13 95.4 9.2 99 19-122 12-116 (347)
146 2ifg_A High affinity nerve gro 98.8 1E-08 3.5E-13 92.7 10.2 91 4-94 20-114 (347)
147 3un9_A NLR family member X1; l 98.8 3.4E-10 1.1E-14 103.3 -0.2 18 194-211 209-226 (372)
148 4fs7_A Uncharacterized protein 98.8 6.3E-08 2.1E-12 89.1 13.5 264 3-320 80-374 (394)
149 4gt6_A Cell surface protein; l 98.7 3.2E-07 1.1E-11 84.3 16.0 110 5-118 51-170 (394)
150 3e4g_A ATP synthase subunit S, 98.6 8.5E-09 2.9E-13 82.5 2.7 86 197-303 62-154 (176)
151 3e4g_A ATP synthase subunit S, 98.6 1E-08 3.5E-13 82.1 2.2 87 229-327 61-154 (176)
152 4h09_A Hypothetical leucine ri 98.5 7.8E-06 2.7E-10 74.6 18.5 76 14-92 45-122 (379)
153 2ra8_A Uncharacterized protein 98.5 2.5E-07 8.5E-12 83.7 7.7 63 194-262 250-318 (362)
154 4gt6_A Cell surface protein; l 98.4 6.9E-06 2.4E-10 75.4 16.5 256 5-298 75-367 (394)
155 1io0_A Tropomodulin; LRR prote 98.3 5.1E-07 1.7E-11 73.7 4.9 115 34-158 31-165 (185)
156 1io0_A Tropomodulin; LRR prote 98.3 6E-07 2.1E-11 73.2 5.1 108 12-122 33-164 (185)
157 2ra8_A Uncharacterized protein 98.3 4.6E-06 1.6E-10 75.4 11.1 62 194-262 277-341 (362)
158 3rw6_A Nuclear RNA export fact 97.9 1.6E-05 5.4E-10 68.3 6.7 101 15-116 141-259 (267)
159 3rw6_A Nuclear RNA export fact 97.8 1.9E-05 6.6E-10 67.8 5.5 108 35-150 137-257 (267)
160 4h09_A Hypothetical leucine ri 97.4 0.00032 1.1E-08 63.8 8.1 125 12-152 214-341 (379)
161 1pgv_A TMD-1, tropomodulin TMD 96.3 0.0046 1.6E-07 50.2 5.0 114 35-157 37-170 (197)
162 3rfe_A Platelet glycoprotein I 96.2 0.0078 2.7E-07 45.4 5.6 43 7-50 24-66 (130)
163 3rfe_A Platelet glycoprotein I 96.0 0.012 4.3E-07 44.3 5.7 53 63-118 11-65 (130)
164 1pgv_A TMD-1, tropomodulin TMD 95.8 0.013 4.4E-07 47.5 5.4 79 14-92 40-135 (197)
165 2lz0_A Uncharacterized protein 74.5 2.9 9.8E-05 29.5 3.5 43 27-69 8-52 (100)
166 2lz0_A Uncharacterized protein 62.5 5.9 0.0002 27.8 3.0 47 3-50 6-54 (100)
No 1
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=1.3e-26 Score=211.18 Aligned_cols=273 Identities=15% Similarity=0.207 Sum_probs=178.9
Q ss_pred CcccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC-cchhhhhccccCCEEeccCCcccccCcccc
Q 017525 2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN-PLLFEISKVVSLQHLDLSHSRIESLPIEFK 80 (370)
Q Consensus 2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~ 80 (370)
++.++.++....+++|++|++++|.++.++. +..+++|++|++++|. .....+..+++|++|++++|.++.++. +.
T Consensus 53 ~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~ 129 (347)
T 4fmz_A 53 GEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP-LA 129 (347)
T ss_dssp SSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG-GT
T ss_pred CCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh-hc
Confidence 3455666655667777777777777776665 6777777777777776 223356777777777777777766655 66
Q ss_pred cCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhH
Q 017525 81 CLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQ 160 (370)
Q Consensus 81 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~ 160 (370)
.+++|+.|++++|......+. +..+++|++|++++| .+..++ .+..+++|+.++++++....+.
T Consensus 130 ~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~-~~~~~~-------------~~~~l~~L~~L~l~~n~l~~~~ 193 (347)
T 4fmz_A 130 NLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTES-KVKDVT-------------PIANLTDLYSLSLNYNQIEDIS 193 (347)
T ss_dssp TCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSS-CCCCCG-------------GGGGCTTCSEEECTTSCCCCCG
T ss_pred cCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCC-CcCCch-------------hhccCCCCCEEEccCCcccccc
Confidence 777777777777755544433 677777777777777 554221 2566777777777777666555
Q ss_pred hhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEeccc
Q 017525 161 RLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSK 240 (370)
Q Consensus 161 ~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 240 (370)
.+.... .++.+.+.++.-.... .+..+++|++|++++|.++.++. + ..+++|++|++++|+
T Consensus 194 ~~~~l~-----~L~~L~l~~n~l~~~~---~~~~~~~L~~L~l~~n~l~~~~~-~----------~~l~~L~~L~l~~n~ 254 (347)
T 4fmz_A 194 PLASLT-----SLHYFTAYVNQITDIT---PVANMTRLNSLKIGNNKITDLSP-L----------ANLSQLTWLEIGTNQ 254 (347)
T ss_dssp GGGGCT-----TCCEEECCSSCCCCCG---GGGGCTTCCEEECCSSCCCCCGG-G----------TTCTTCCEEECCSSC
T ss_pred cccCCC-----ccceeecccCCCCCCc---hhhcCCcCCEEEccCCccCCCcc-h----------hcCCCCCEEECCCCc
Confidence 433333 2555666554332222 36677788888888877776643 1 567788888888887
Q ss_pred ccccCcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccccccccC-CCccCCCcceEee
Q 017525 241 FRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHS-KALPFPHLKEMSV 319 (370)
Q Consensus 241 l~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~-~~~~~~~L~~L~l 319 (370)
++.++.+..+++|+.|++++|.. +++ ..+..+++|+.|++++| .+..... ....+++|+.|++
T Consensus 255 l~~~~~~~~l~~L~~L~l~~n~l-~~~--------------~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L 318 (347)
T 4fmz_A 255 ISDINAVKDLTKLKMLNVGSNQI-SDI--------------SVLNNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFL 318 (347)
T ss_dssp CCCCGGGTTCTTCCEEECCSSCC-CCC--------------GGGGGCTTCSEEECCSS-CCCGGGHHHHHTCTTCSEEEC
T ss_pred cCCChhHhcCCCcCEEEccCCcc-CCC--------------hhhcCCCCCCEEECcCC-cCCCcChhHhhccccCCEEEc
Confidence 77777777788888888888753 222 14567788888888887 3444332 2345788888888
Q ss_pred cCCCCCCCCC
Q 017525 320 DRCPLLKKLP 329 (370)
Q Consensus 320 ~~c~~L~~l~ 329 (370)
++|+ ++.++
T Consensus 319 ~~n~-l~~~~ 327 (347)
T 4fmz_A 319 SQNH-ITDIR 327 (347)
T ss_dssp CSSS-CCCCG
T ss_pred cCCc-ccccc
Confidence 8875 55443
No 2
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=3e-26 Score=212.13 Aligned_cols=274 Identities=18% Similarity=0.184 Sum_probs=160.1
Q ss_pred CCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--c-chhhhhccccCCEEeccCCcccccCc-ccccCCcccEE
Q 017525 13 VCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--P-LLFEISKVVSLQHLDLSHSRIESLPI-EFKCLVNLKCL 88 (370)
Q Consensus 13 ~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~-~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L 88 (370)
.+++++.|+++++.++.+|..++..+++|++|++++|. . .+..+..+++|++|++++|.++.++. .++.+++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 44566666666666666666555666666666666665 2 22355566666666666666654433 35566666666
Q ss_pred eccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCC
Q 017525 89 NLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMP 168 (370)
Q Consensus 89 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~ 168 (370)
++++| .+..+|..++.++++|++|++++| .+..++ ...+..+++|+.|+++.+...... +.....+
T Consensus 123 ~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~-----------~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~L 188 (390)
T 3o6n_A 123 VLERN-DLSSLPRGIFHNTPKLTTLSMSNN-NLERIE-----------DDTFQATTSLQNLQLSSNRLTHVD-LSLIPSL 188 (390)
T ss_dssp ECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCBCC-----------TTTTSSCTTCCEEECCSSCCSBCC-GGGCTTC
T ss_pred ECCCC-ccCcCCHHHhcCCCCCcEEECCCC-ccCccC-----------hhhccCCCCCCEEECCCCcCCccc-ccccccc
Confidence 66665 444555544556666666666665 443221 223444455555555554433221 1111111
Q ss_pred Ccc--------------ccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEE
Q 017525 169 QYV--------------STPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNV 234 (370)
Q Consensus 169 ~~l--------------~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L 234 (370)
..+ .++.+.+.++.-.... ....++|+.|++++|.++..+ ++ ..+++|++|
T Consensus 189 ~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~L~~L~l~~n~l~~~~--~l---------~~l~~L~~L 253 (390)
T 3o6n_A 189 FHANVSYNLLSTLAIPIAVEELDASHNSINVVR----GPVNVELTILKLQHNNLTDTA--WL---------LNYPGLVEV 253 (390)
T ss_dssp SEEECCSSCCSEEECCSSCSEEECCSSCCCEEE----CCCCSSCCEEECCSSCCCCCG--GG---------GGCTTCSEE
T ss_pred ceeecccccccccCCCCcceEEECCCCeeeecc----ccccccccEEECCCCCCcccH--HH---------cCCCCccEE
Confidence 110 3555555554322111 123467888888888877652 11 567888888
Q ss_pred EEeccccccc--CcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccccccccCCCccCC
Q 017525 235 YISRSKFRHA--TWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSKALPFP 312 (370)
Q Consensus 235 ~l~~~~l~~~--~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~~~~~~ 312 (370)
++++|+++++ ..+..+++|+.|++++|.... + +.....+|+|+.|+++++ .++.++.....++
T Consensus 254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~-------------~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~ 318 (390)
T 3o6n_A 254 DLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-L-------------NLYGQPIPTLKVLDLSHN-HLLHVERNQPQFD 318 (390)
T ss_dssp ECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-E-------------ECSSSCCTTCCEEECCSS-CCCCCGGGHHHHT
T ss_pred ECCCCcCCCcChhHccccccCCEEECCCCcCcc-c-------------CcccCCCCCCCEEECCCC-cceecCccccccC
Confidence 8888877664 356778888888888876422 2 234567788888888887 5666666556678
Q ss_pred CcceEeecCCCCCCCCCCC
Q 017525 313 HLKEMSVDRCPLLKKLPLD 331 (370)
Q Consensus 313 ~L~~L~l~~c~~L~~l~~~ 331 (370)
+|+.|++.+++ ++.+++.
T Consensus 319 ~L~~L~L~~N~-i~~~~~~ 336 (390)
T 3o6n_A 319 RLENLYLDHNS-IVTLKLS 336 (390)
T ss_dssp TCSEEECCSSC-CCCCCCC
T ss_pred cCCEEECCCCc-cceeCch
Confidence 88888888764 6666643
No 3
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=1.8e-25 Score=203.69 Aligned_cols=268 Identities=17% Similarity=0.228 Sum_probs=216.8
Q ss_pred CcccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCccc
Q 017525 2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEF 79 (370)
Q Consensus 2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~ 79 (370)
+|.++.++....+++|++|++++|.++.++. +..+++|++|++++|. .++. +..+++|++|++++|.....+..+
T Consensus 75 ~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~ 151 (347)
T 4fmz_A 75 GNQITDISPLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPL 151 (347)
T ss_dssp SSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGG
T ss_pred CCccccchhhhcCCcCCEEEccCCcccCchH--HcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccch
Confidence 5678888877899999999999999988764 8999999999999999 5554 889999999999999554344458
Q ss_pred ccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhh
Q 017525 80 KCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAF 159 (370)
Q Consensus 80 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~ 159 (370)
..+++|+.|++++| .+..++. +..+++|++|++++| .+..++ .+..+++|+.+++..+.....
T Consensus 152 ~~l~~L~~L~l~~~-~~~~~~~--~~~l~~L~~L~l~~n-~l~~~~-------------~~~~l~~L~~L~l~~n~l~~~ 214 (347)
T 4fmz_A 152 SNMTGLNYLTVTES-KVKDVTP--IANLTDLYSLSLNYN-QIEDIS-------------PLASLTSLHYFTAYVNQITDI 214 (347)
T ss_dssp TTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECTTS-CCCCCG-------------GGGGCTTCCEEECCSSCCCCC
T ss_pred hhCCCCcEEEecCC-CcCCchh--hccCCCCCEEEccCC-cccccc-------------cccCCCccceeecccCCCCCC
Confidence 89999999999998 4555544 789999999999999 776332 277889999999999987766
Q ss_pred HhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecc
Q 017525 160 QRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRS 239 (370)
Q Consensus 160 ~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 239 (370)
..+.... .++.+.+.++.-.... .+..+++|++|++++|.++.++ .+ ..+++|++|++++|
T Consensus 215 ~~~~~~~-----~L~~L~l~~n~l~~~~---~~~~l~~L~~L~l~~n~l~~~~-~~----------~~l~~L~~L~l~~n 275 (347)
T 4fmz_A 215 TPVANMT-----RLNSLKIGNNKITDLS---PLANLSQLTWLEIGTNQISDIN-AV----------KDLTKLKMLNVGSN 275 (347)
T ss_dssp GGGGGCT-----TCCEEECCSSCCCCCG---GGTTCTTCCEEECCSSCCCCCG-GG----------TTCTTCCEEECCSS
T ss_pred chhhcCC-----cCCEEEccCCccCCCc---chhcCCCCCEEECCCCccCCCh-hH----------hcCCCcCEEEccCC
Confidence 5544443 3778888776543333 4888999999999999988763 12 57899999999999
Q ss_pred cccccCcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccccccccCCCccCCCcceEee
Q 017525 240 KFRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSKALPFPHLKEMSV 319 (370)
Q Consensus 240 ~l~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l 319 (370)
++++++.+..+++|+.|++++|....... ..+..+++|+.|++++|. ++.+.. ...+++|++|++
T Consensus 276 ~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-------------~~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l 340 (347)
T 4fmz_A 276 QISDISVLNNLSQLNSLFLNNNQLGNEDM-------------EVIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADF 340 (347)
T ss_dssp CCCCCGGGGGCTTCSEEECCSSCCCGGGH-------------HHHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESS
T ss_pred ccCCChhhcCCCCCCEEECcCCcCCCcCh-------------hHhhccccCCEEEccCCc-cccccC-hhhhhccceeeh
Confidence 99998888999999999999997544332 356789999999999994 666655 567999999999
Q ss_pred cCCC
Q 017525 320 DRCP 323 (370)
Q Consensus 320 ~~c~ 323 (370)
.+|+
T Consensus 341 ~~N~ 344 (347)
T 4fmz_A 341 ANQV 344 (347)
T ss_dssp SCC-
T ss_pred hhhc
Confidence 9875
No 4
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=1.7e-25 Score=207.02 Aligned_cols=258 Identities=19% Similarity=0.294 Sum_probs=189.0
Q ss_pred hcCCCCcEEEccCCC--cchhh-hhccccCCEEeccCCcccccCc-ccccCCcccEEeccCcccccccCcccccCCCCCc
Q 017525 36 QSMASLRVLKWSYSN--PLLFE-ISKVVSLQHLDLSHSRIESLPI-EFKCLVNLKCLNLEYTYGISRIPPKVISNLKILE 111 (370)
Q Consensus 36 ~~l~~L~~L~l~~~~--~~~~~-~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 111 (370)
..++++++|+++++. .+|.. +..+++|++|++++|.++.++. .++.+++|++|++++| .+..++...++++++|+
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCC
Confidence 357899999999998 66655 6889999999999999987765 7899999999999999 56666665689999999
Q ss_pred EEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHh--hhcCCCCCccccCcEEecCcCCCCcccc
Q 017525 112 TLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQR--LLGSCMPQYVSTPSLCLSHFNNSKSLGV 189 (370)
Q Consensus 112 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~--~~~~~~~~~l~L~~l~l~~~~~~~~~~~ 189 (370)
+|++++| .+..++ ...+..+++|+.|+++++.+..+.. +.... +|+.+.+.++.- +..
T Consensus 121 ~L~L~~n-~l~~l~-----------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----~L~~L~l~~n~l-~~~-- 180 (390)
T 3o6n_A 121 VLVLERN-DLSSLP-----------RGIFHNTPKLTTLSMSNNNLERIEDDTFQATT-----SLQNLQLSSNRL-THV-- 180 (390)
T ss_dssp EEECCSS-CCCCCC-----------TTTTTTCTTCCEEECCSSCCCBCCTTTTSSCT-----TCCEEECCSSCC-SBC--
T ss_pred EEECCCC-ccCcCC-----------HHHhcCCCCCcEEECCCCccCccChhhccCCC-----CCCEEECCCCcC-Ccc--
Confidence 9999999 776433 2335778999999999998765432 22222 377777766532 222
Q ss_pred ccccccCCCcEEEEecCCcccceecc-------CCCccccccccccccCcEEEEecccccccCcccCCCCccEEeeccCc
Q 017525 190 FSLASLRHLQTLQLTYNDLDEIKIDN-------GGEVKRVLEISGFHSLKNVYISRSKFRHATWLFLAPNLKRVEIDNCQ 262 (370)
Q Consensus 190 ~~l~~l~~L~~L~l~~~~l~~~~~~~-------~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~ 262 (370)
.+..+++|+.|++++|.++.++... .+.....+|...+++|++|++++|++++++++..+++|++|++++|.
T Consensus 181 -~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~ 259 (390)
T 3o6n_A 181 -DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE 259 (390)
T ss_dssp -CGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC
T ss_pred -ccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCc
Confidence 2444556666666655554432110 00000001224567999999999999888889999999999999997
Q ss_pred chHHhhhccccCCCcccccCCccccccccccccccccccccccCCCccCCCcceEeecCCCCCCCCCC
Q 017525 263 DMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSKALPFPHLKEMSVDRCPLLKKLPL 330 (370)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~L~~l~~ 330 (370)
... + .+..+..+++|+.|+++++ .++.++.....+++|+.|++++| +++.+|.
T Consensus 260 l~~-~------------~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~ 312 (390)
T 3o6n_A 260 LEK-I------------MYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVER 312 (390)
T ss_dssp CCE-E------------ESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGG
T ss_pred CCC-c------------ChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC-cceecCc
Confidence 433 2 1246778999999999998 67788776778999999999987 4666554
No 5
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=8.3e-26 Score=220.41 Aligned_cols=284 Identities=18% Similarity=0.224 Sum_probs=146.7
Q ss_pred cccccccCC--CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCcccccCc
Q 017525 3 NHIENLVES--PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESLPI 77 (370)
Q Consensus 3 n~l~~l~~~--~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~lp~ 77 (370)
|.+..+|.. ..+++|++|++++|.++.+++..+..+++|++|++++|. ..|..++++++|++|++++|.++.+|.
T Consensus 61 ~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~ 140 (597)
T 3oja_B 61 STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR 140 (597)
T ss_dssp CEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCH
Confidence 334445543 455666666666666665555445666666666666665 233344566666666666666665555
Q ss_pred c-cccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCccccccccc-----CCcchhhhhcccCCCccEEEE
Q 017525 78 E-FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILF-----GDCRVLVEELLGLEHLSVFTI 151 (370)
Q Consensus 78 ~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-----~~~~~~~~~l~~l~~L~~l~l 151 (370)
. ++.+++|++|++++| .+..++...++++++|++|++++| .+..++..... +.....+..+....+|+.+++
T Consensus 141 ~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~l 218 (597)
T 3oja_B 141 GIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSN-RLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDA 218 (597)
T ss_dssp TTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTS-CCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEEC
T ss_pred HHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCC-CCCCcChhhhhhhhhhhcccCccccccCCchhheeec
Confidence 4 356666666666666 333333333566666666666666 44422210000 000000011111222333333
Q ss_pred EecchhhhHhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccC
Q 017525 152 TLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSL 231 (370)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L 231 (370)
+.+.+..++... .. .|+.|.+.++.-... ..+..+++|+.|++++|.+..+....+ ..+++|
T Consensus 219 s~n~l~~~~~~~-----~~-~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~~~---------~~l~~L 280 (597)
T 3oja_B 219 SHNSINVVRGPV-----NV-ELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMYHPF---------VKMQRL 280 (597)
T ss_dssp CSSCCCEEECSC-----CS-CCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEEESGGG---------TTCSSC
T ss_pred cCCccccccccc-----CC-CCCEEECCCCCCCCC---hhhccCCCCCEEECCCCccCCCCHHHh---------cCccCC
Confidence 333322221100 01 345555554432221 345666677777777776666543332 456777
Q ss_pred cEEEEecccccccCc-ccCCCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccccccccCCCcc
Q 017525 232 KNVYISRSKFRHATW-LFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSKALP 310 (370)
Q Consensus 232 ~~L~l~~~~l~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~~~~ 310 (370)
++|+|++|+++.++. ...+++|+.|+|++|... .+ +..+..+++|+.|++++| .+..++ ...
T Consensus 281 ~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i-------------~~~~~~l~~L~~L~L~~N-~l~~~~--~~~ 343 (597)
T 3oja_B 281 ERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HV-------------ERNQPQFDRLENLYLDHN-SIVTLK--LST 343 (597)
T ss_dssp CEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CC-------------GGGHHHHTTCSEEECCSS-CCCCCC--CCT
T ss_pred CEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-cc-------------CcccccCCCCCEEECCCC-CCCCcC--hhh
Confidence 777777776666543 334677777777776542 22 234566777777777776 344443 335
Q ss_pred CCCcceEeecCCC
Q 017525 311 FPHLKEMSVDRCP 323 (370)
Q Consensus 311 ~~~L~~L~l~~c~ 323 (370)
++.|+.|++++++
T Consensus 344 ~~~L~~L~l~~N~ 356 (597)
T 3oja_B 344 HHTLKNLTLSHND 356 (597)
T ss_dssp TCCCSEEECCSSC
T ss_pred cCCCCEEEeeCCC
Confidence 6777777776654
No 6
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=1.1e-24 Score=206.90 Aligned_cols=285 Identities=20% Similarity=0.190 Sum_probs=204.9
Q ss_pred CcccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCcccccCcc
Q 017525 2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESLPIE 78 (370)
Q Consensus 2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~lp~~ 78 (370)
++.++.+|.. -.++++.|++++|.++.+++..+.++++|++|++++|. ..|..+.++++|++|++++|.++.+|..
T Consensus 20 ~~~l~~ip~~-~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 98 (477)
T 2id5_A 20 RKRFVAVPEG-IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLG 98 (477)
T ss_dssp SCCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTT
T ss_pred CCCcCcCCCC-CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcc
Confidence 3567777764 34789999999999998877668999999999999998 4578899999999999999999988874
Q ss_pred -cccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchh
Q 017525 79 -FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFH 157 (370)
Q Consensus 79 -~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~ 157 (370)
+..+++|++|++++| .+..++...+.++++|++|++++| .+..+ ....+..+++|+.|+++.+...
T Consensus 99 ~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~-----------~~~~~~~l~~L~~L~l~~n~l~ 165 (477)
T 2id5_A 99 VFTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDN-DLVYI-----------SHRAFSGLNSLEQLTLEKCNLT 165 (477)
T ss_dssp SSTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEEECCT-TCCEE-----------CTTSSTTCTTCCEEEEESCCCS
T ss_pred cccCCCCCCEEECCCC-ccccCChhHccccccCCEEECCCC-cccee-----------ChhhccCCCCCCEEECCCCcCc
Confidence 688999999999999 445454445899999999999999 66532 2445777889999999988776
Q ss_pred hhHh--hhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCC-cccceeccCCCccccccccccccCcEE
Q 017525 158 AFQR--LLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYND-LDEIKIDNGGEVKRVLEISGFHSLKNV 234 (370)
Q Consensus 158 ~~~~--~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-l~~~~~~~~~~~~~~~~~~~~~~L~~L 234 (370)
.++. +.... +|+.+.+.++.-.. .....+..+++|+.|++++|. +..++... ....+|++|
T Consensus 166 ~~~~~~l~~l~-----~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~----------~~~~~L~~L 229 (477)
T 2id5_A 166 SIPTEALSHLH-----GLIVLRLRHLNINA-IRDYSFKRLYRLKVLEISHWPYLDTMTPNC----------LYGLNLTSL 229 (477)
T ss_dssp SCCHHHHTTCT-----TCCEEEEESCCCCE-ECTTCSCSCTTCCEEEEECCTTCCEECTTT----------TTTCCCSEE
T ss_pred ccChhHhcccC-----CCcEEeCCCCcCcE-eChhhcccCcccceeeCCCCccccccCccc----------ccCccccEE
Confidence 5542 22222 36777776654322 223357778888888888854 33333222 223478888
Q ss_pred EEecccccccC--cccCCCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccccccccC-CCccC
Q 017525 235 YISRSKFRHAT--WLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHS-KALPF 311 (370)
Q Consensus 235 ~l~~~~l~~~~--~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~-~~~~~ 311 (370)
++++|+++.++ .+..+++|+.|+|++|.. +.+. +..+..+++|+.|+++++ .++.+.. ....+
T Consensus 230 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~------------~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l 295 (477)
T 2id5_A 230 SITHCNLTAVPYLAVRHLVYLRFLNLSYNPI-STIE------------GSMLHELLRLQEIQLVGG-QLAVVEPYAFRGL 295 (477)
T ss_dssp EEESSCCCSCCHHHHTTCTTCCEEECCSSCC-CEEC------------TTSCTTCTTCCEEECCSS-CCSEECTTTBTTC
T ss_pred ECcCCcccccCHHHhcCccccCeeECCCCcC-CccC------------hhhccccccCCEEECCCC-ccceECHHHhcCc
Confidence 88888777765 466788888888888763 2221 135667778888888776 4555533 33457
Q ss_pred CCcceEeecCCCCCCCCCCC
Q 017525 312 PHLKEMSVDRCPLLKKLPLD 331 (370)
Q Consensus 312 ~~L~~L~l~~c~~L~~l~~~ 331 (370)
++|+.|+++++ +++.+|..
T Consensus 296 ~~L~~L~L~~N-~l~~~~~~ 314 (477)
T 2id5_A 296 NYLRVLNVSGN-QLTTLEES 314 (477)
T ss_dssp TTCCEEECCSS-CCSCCCGG
T ss_pred ccCCEEECCCC-cCceeCHh
Confidence 77888888776 46665544
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=2.9e-25 Score=210.97 Aligned_cols=282 Identities=21% Similarity=0.237 Sum_probs=216.5
Q ss_pred CcccccccCC--CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchh-hhhccccCCEEeccCCccccc-
Q 017525 2 TNHIENLVES--PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLF-EISKVVSLQHLDLSHSRIESL- 75 (370)
Q Consensus 2 ~n~l~~l~~~--~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~-~~~~l~~L~~L~l~~~~l~~l- 75 (370)
+|.++.++.. .++++|++|++++|.++.+.+..+.++++|++|++++|. .+|. .+.++++|++|++++|.++.+
T Consensus 41 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~ 120 (477)
T 2id5_A 41 KNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILL 120 (477)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEEC
T ss_pred CCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCC
Confidence 5778888654 789999999999999998866668999999999999998 5554 578999999999999999865
Q ss_pred CcccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecc
Q 017525 76 PIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNN 155 (370)
Q Consensus 76 p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~ 155 (370)
|..+..+++|+.|++++| .+..++...+.++++|++|++++| .+..++ ...+..+++|+.|++..+.
T Consensus 121 ~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~-----------~~~l~~l~~L~~L~l~~n~ 187 (477)
T 2id5_A 121 DYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKC-NLTSIP-----------TEALSHLHGLIVLRLRHLN 187 (477)
T ss_dssp TTTTTTCTTCCEEEECCT-TCCEECTTSSTTCTTCCEEEEESC-CCSSCC-----------HHHHTTCTTCCEEEEESCC
T ss_pred hhHccccccCCEEECCCC-ccceeChhhccCCCCCCEEECCCC-cCcccC-----------hhHhcccCCCcEEeCCCCc
Confidence 457889999999999998 555555545999999999999999 776432 3457788999999999987
Q ss_pred hhhhHhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEE
Q 017525 156 FHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVY 235 (370)
Q Consensus 156 ~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~ 235 (370)
...+... ....+. .|+.+.+.++........ ......+|++|++++|.++.++...+ ..+++|++|+
T Consensus 188 i~~~~~~-~~~~l~--~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~---------~~l~~L~~L~ 254 (477)
T 2id5_A 188 INAIRDY-SFKRLY--RLKVLEISHWPYLDTMTP-NCLYGLNLTSLSITHCNLTAVPYLAV---------RHLVYLRFLN 254 (477)
T ss_dssp CCEECTT-CSCSCT--TCCEEEEECCTTCCEECT-TTTTTCCCSEEEEESSCCCSCCHHHH---------TTCTTCCEEE
T ss_pred CcEeChh-hcccCc--ccceeeCCCCccccccCc-ccccCccccEEECcCCcccccCHHHh---------cCccccCeeE
Confidence 7654321 112222 478888888766554422 23334589999999999887764433 5688999999
Q ss_pred EecccccccC--cccCCCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccccccccCCC-ccCC
Q 017525 236 ISRSKFRHAT--WLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSKA-LPFP 312 (370)
Q Consensus 236 l~~~~l~~~~--~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~~-~~~~ 312 (370)
+++|+++.++ .+..+++|+.|+|++|.... + .+..+..+++|+.|+++++ .++.++... ..++
T Consensus 255 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~------------~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~ 320 (477)
T 2id5_A 255 LSYNPISTIEGSMLHELLRLQEIQLVGGQLAV-V------------EPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVG 320 (477)
T ss_dssp CCSSCCCEECTTSCTTCTTCCEEECCSSCCSE-E------------CTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGG
T ss_pred CCCCcCCccChhhccccccCCEEECCCCccce-E------------CHHHhcCcccCCEEECCCC-cCceeCHhHcCCCc
Confidence 9999887764 46788999999999886432 2 1246778899999999987 677665543 3578
Q ss_pred CcceEeecCCC
Q 017525 313 HLKEMSVDRCP 323 (370)
Q Consensus 313 ~L~~L~l~~c~ 323 (370)
+|+.|++.+++
T Consensus 321 ~L~~L~l~~N~ 331 (477)
T 2id5_A 321 NLETLILDSNP 331 (477)
T ss_dssp GCCEEECCSSC
T ss_pred ccCEEEccCCC
Confidence 89999887664
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.93 E-value=6.1e-25 Score=214.90 Aligned_cols=120 Identities=21% Similarity=0.182 Sum_probs=90.6
Q ss_pred CcccccccCC--CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCcccccC
Q 017525 2 TNHIENLVES--PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESLP 76 (370)
Q Consensus 2 ~n~l~~l~~~--~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~lp 76 (370)
+|.++.++.. .++++|++|++++|.++.+++..|.++++|++|++++|. ..|..++++++|++|++++|.++.++
T Consensus 41 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 120 (606)
T 3vq2_A 41 FNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLE 120 (606)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSS
T ss_pred CCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcccccc
Confidence 4666767663 678888888888888887766667888888888888887 34777888888888888888887666
Q ss_pred -cccccCCcccEEeccCccccc-ccCcccccCCCCCcEEEccccCCCcc
Q 017525 77 -IEFKCLVNLKCLNLEYTYGIS-RIPPKVISNLKILETLRMYECAALPQ 123 (370)
Q Consensus 77 -~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~ 123 (370)
..++.+++|++|++++|...+ .+|.. ++++++|++|++++| .+..
T Consensus 121 ~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n-~l~~ 167 (606)
T 3vq2_A 121 SFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYN-YIQT 167 (606)
T ss_dssp SSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSS-CCCE
T ss_pred ccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCC-ccee
Confidence 467788888888888884433 45654 888888888888887 5543
No 9
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=2.9e-24 Score=206.30 Aligned_cols=116 Identities=22% Similarity=0.218 Sum_probs=99.2
Q ss_pred CcccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCcccccCcc
Q 017525 2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESLPIE 78 (370)
Q Consensus 2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~lp~~ 78 (370)
+|.++.+|.... ++|++|++++|.++.+++..+.++++|++|++++|. ..|..+.++++|++|++++|.++.+|..
T Consensus 9 ~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~ 87 (520)
T 2z7x_B 9 KNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH 87 (520)
T ss_dssp TSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC
T ss_pred CCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc
Confidence 578888887633 899999999999999988779999999999999998 4578899999999999999999988877
Q ss_pred cccCCcccEEeccCccccc-ccCcccccCCCCCcEEEccccCCCc
Q 017525 79 FKCLVNLKCLNLEYTYGIS-RIPPKVISNLKILETLRMYECAALP 122 (370)
Q Consensus 79 ~~~l~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~ 122 (370)
.+++|++|++++|...+ .+|.. ++++++|++|++++| .+.
T Consensus 88 --~l~~L~~L~L~~N~l~~~~~p~~-~~~l~~L~~L~L~~n-~l~ 128 (520)
T 2z7x_B 88 --PTVNLKHLDLSFNAFDALPICKE-FGNMSQLKFLGLSTT-HLE 128 (520)
T ss_dssp --CCCCCSEEECCSSCCSSCCCCGG-GGGCTTCCEEEEEES-SCC
T ss_pred --ccCCccEEeccCCccccccchhh-hccCCcceEEEecCc-ccc
Confidence 89999999999995433 34554 899999999999988 554
No 10
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=4.3e-25 Score=208.53 Aligned_cols=113 Identities=18% Similarity=0.216 Sum_probs=76.7
Q ss_pred CCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccccccC--cccCCCCccEEeeccCcchHHhhhcccc
Q 017525 196 RHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHAT--WLFLAPNLKRVEIDNCQDMKEIIDSEKF 273 (370)
Q Consensus 196 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~--~l~~l~~L~~L~L~~~~~~~~~~~~~~~ 273 (370)
++|+.|++++|.+..+....+ ..+++|++|++++|+++++. .+..+++|+.|++++|.. +.+
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~---------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~------ 338 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVF---------SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSI------ 338 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTT---------TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-CEE------
T ss_pred cCceEEEecCccccccchhhc---------ccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCcc-CCc------
Confidence 578888888887776654433 46778888888888776653 566788888888888764 222
Q ss_pred CCCcccccCCcccccccccccccccccccccc-CCCccCCCcceEeecCCCCCCCCCCCC
Q 017525 274 GEVPAEVMANLIPFARLERLILEELKNLKTVH-SKALPFPHLKEMSVDRCPLLKKLPLDC 332 (370)
Q Consensus 274 ~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~-~~~~~~~~L~~L~l~~c~~L~~l~~~~ 332 (370)
.+..+..+++|+.|+++++ .++.+. .....+++|+.|+++++ +++.+|.+.
T Consensus 339 ------~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~ 390 (455)
T 3v47_A 339 ------DSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTN-QLKSVPDGI 390 (455)
T ss_dssp ------CGGGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTT
T ss_pred ------ChhHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCC-ccccCCHhH
Confidence 1235667788888888877 455553 33456778888888775 566666544
No 11
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=1.5e-24 Score=205.44 Aligned_cols=107 Identities=21% Similarity=0.277 Sum_probs=78.2
Q ss_pred CcccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCccc
Q 017525 2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEF 79 (370)
Q Consensus 2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~ 79 (370)
++.++.+|....+++|++|++++|.++.+++ +.++++|++|++++|. ..+. +.++++|++|++++|.++.++. +
T Consensus 55 ~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~ 130 (466)
T 1o6v_A 55 RLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP-L 130 (466)
T ss_dssp SSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-G
T ss_pred CCCCccCcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChH-H
Confidence 4566777766778888888888888887776 7888888888888888 4444 7888888888888888887765 7
Q ss_pred ccCCcccEEeccCcccccccCcccccCCCCCcEEEc
Q 017525 80 KCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRM 115 (370)
Q Consensus 80 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 115 (370)
+.+++|++|++++|. +..++. +.++++|++|++
T Consensus 131 ~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l 163 (466)
T 1o6v_A 131 KNLTNLNRLELSSNT-ISDISA--LSGLTSLQQLSF 163 (466)
T ss_dssp TTCTTCSEEEEEEEE-ECCCGG--GTTCTTCSEEEE
T ss_pred cCCCCCCEEECCCCc-cCCChh--hccCCcccEeec
Confidence 788888888888873 443332 444444444444
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.93 E-value=1.3e-24 Score=212.68 Aligned_cols=102 Identities=22% Similarity=0.165 Sum_probs=51.8
Q ss_pred CCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCccccc-CcccccCCcccEEecc
Q 017525 16 RLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESL-PIEFKCLVNLKCLNLE 91 (370)
Q Consensus 16 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~ 91 (370)
.+++|++++|.++.+++..+.++++|++|++++|. ..|..+.++++|++|++++|.++.+ |..++.+++|++|+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 45555555555555544335555555555555554 3344455555555555555555433 3345555555555555
Q ss_pred CcccccccCcccccCCCCCcEEEcccc
Q 017525 92 YTYGISRIPPKVISNLKILETLRMYEC 118 (370)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~L~~L~l~~~ 118 (370)
+| .+..++...++++++|++|++++|
T Consensus 114 ~n-~i~~l~~~~~~~l~~L~~L~L~~n 139 (606)
T 3t6q_A 114 QT-GISSIDFIPLHNQKTLESLYLGSN 139 (606)
T ss_dssp TS-CCSCGGGSCCTTCTTCCEEECCSS
T ss_pred cc-CcccCCcchhccCCcccEEECCCC
Confidence 55 233332222455555555555555
No 13
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=9.4e-25 Score=206.16 Aligned_cols=296 Identities=17% Similarity=0.183 Sum_probs=176.3
Q ss_pred cccccccCC--CCCCCCCEEecCCCcCC-CCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCcccc-c
Q 017525 3 NHIENLVES--PVCPRLRTLFLSSNIFH-RVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIES-L 75 (370)
Q Consensus 3 n~l~~l~~~--~~l~~L~~L~l~~~~i~-~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~-l 75 (370)
|.++.+++. .++++|++|++++|.+. .+++..+.++++|++|++++|. ..|..++++++|++|++++|.++. +
T Consensus 40 n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 119 (455)
T 3v47_A 40 NSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAV 119 (455)
T ss_dssp SCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHH
T ss_pred CccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccc
Confidence 445555332 55666666666666554 4444445666666666666665 335556666666666666666652 2
Q ss_pred Ccc--cccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCC---------------------
Q 017525 76 PIE--FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGD--------------------- 132 (370)
Q Consensus 76 p~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~--------------------- 132 (370)
+.. ++.+++|++|++++|...+..|...+.++++|++|++++| .+...........
T Consensus 120 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~ 198 (455)
T 3v47_A 120 LSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN-KVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEY 198 (455)
T ss_dssp HHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTC-CBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTT
T ss_pred cCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCC-cccccChhhhhccccccccccccccCcccccchh
Confidence 332 5566666666666663333334333566667777777666 4443221100000
Q ss_pred --cchhhhhcccCCCccEEEEEecchhhh--HhhhcC---CCCCc-------------------------------cccC
Q 017525 133 --CRVLVEELLGLEHLSVFTITLNNFHAF--QRLLGS---CMPQY-------------------------------VSTP 174 (370)
Q Consensus 133 --~~~~~~~l~~l~~L~~l~l~~~~~~~~--~~~~~~---~~~~~-------------------------------l~L~ 174 (370)
.......+..+++|+.|+++++.+... ..+... .++.. ..++
T Consensus 199 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 278 (455)
T 3v47_A 199 WLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVK 278 (455)
T ss_dssp CTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCC
T ss_pred hccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCce
Confidence 000001122335677777777754321 111111 00000 0245
Q ss_pred cEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEeccccccc--CcccCCCC
Q 017525 175 SLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHA--TWLFLAPN 252 (370)
Q Consensus 175 ~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~l~~l~~ 252 (370)
.+++.++.-. ......+..+++|++|++++|.++.++...+ ..+++|++|++++|+++.+ ..+..+++
T Consensus 279 ~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 348 (455)
T 3v47_A 279 TCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAF---------WGLTHLLKLNLSQNFLGSIDSRMFENLDK 348 (455)
T ss_dssp EEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTT---------TTCTTCCEEECCSSCCCEECGGGGTTCTT
T ss_pred EEEecCcccc-ccchhhcccCCCCCEEECCCCcccccChhHh---------cCcccCCEEECCCCccCCcChhHhcCccc
Confidence 5555543322 2212357788999999999999988765443 5689999999999988776 35778999
Q ss_pred ccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccccccccCCC-ccCCCcceEeecCCC
Q 017525 253 LKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSKA-LPFPHLKEMSVDRCP 323 (370)
Q Consensus 253 L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~~-~~~~~L~~L~l~~c~ 323 (370)
|++|+|++|.. +.+ .+..+..+++|++|+++++ .++.++... ..+++|+.|++++++
T Consensus 349 L~~L~Ls~N~l-~~~------------~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 349 LEVLDLSYNHI-RAL------------GDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CCEEECCSSCC-CEE------------CTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEECCCCcc-ccc------------ChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCC
Confidence 99999999974 322 1246788999999999997 677776654 468889999998875
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=2.5e-25 Score=218.37 Aligned_cols=307 Identities=11% Similarity=0.126 Sum_probs=207.8
Q ss_pred ccCC-C--CCCCCCEEecCCCcCC-CCChHHHhcCCCCcEEEccCCC-----cchhhhhcc------ccCCEEeccCCcc
Q 017525 8 LVES-P--VCPRLRTLFLSSNIFH-RVNSDFFQSMASLRVLKWSYSN-----PLLFEISKV------VSLQHLDLSHSRI 72 (370)
Q Consensus 8 l~~~-~--~l~~L~~L~l~~~~i~-~~~~~~~~~l~~L~~L~l~~~~-----~~~~~~~~l------~~L~~L~l~~~~l 72 (370)
+|.. . ++++|+.|++++|.+. .+|.. +.++++|++|++++|. .+|..++.+ ++|++|++++|.+
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l 317 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL 317 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTT-TTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHH-HhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC
Confidence 7887 6 8999999999999766 56655 8999999999999996 478888776 8999999999999
Q ss_pred cccCc--ccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCC-ccEE
Q 017525 73 ESLPI--EFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEH-LSVF 149 (370)
Q Consensus 73 ~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~l 149 (370)
+.+|. .++.+++|++|++++|...+.+| . ++++++|++|++++| .+..+| ..+..+++ |+.|
T Consensus 318 ~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~L~~L~L~~N-~l~~lp------------~~l~~l~~~L~~L 382 (636)
T 4eco_A 318 KTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIKLASLNLAYN-QITEIP------------ANFCGFTEQVENL 382 (636)
T ss_dssp SSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEEESEEECCSS-EEEECC------------TTSEEECTTCCEE
T ss_pred CccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCCCCCEEECCCC-cccccc------------HhhhhhcccCcEE
Confidence 99998 89999999999999986555888 3 888889999999888 665333 23444555 5566
Q ss_pred EEEecchhhhHhhhcCCCCCc-----------------------------cccCcEEecCcCCCCccccccccccCCCcE
Q 017525 150 TITLNNFHAFQRLLGSCMPQY-----------------------------VSTPSLCLSHFNNSKSLGVFSLASLRHLQT 200 (370)
Q Consensus 150 ~l~~~~~~~~~~~~~~~~~~~-----------------------------l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~ 200 (370)
+++.|.+..++.......+.. .+|+.+.+.++.-. ......+..+++|++
T Consensus 383 ~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~ 461 (636)
T 4eco_A 383 SFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSS 461 (636)
T ss_dssp ECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSE
T ss_pred EccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCE
Confidence 665555443332111111101 02444444443322 111112344667777
Q ss_pred EEEecCCcccceeccCCCccccccccccccCcEEEEecccccccC-ccc--CCCCccEEeeccCcchHHhhhccccCCCc
Q 017525 201 LQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHAT-WLF--LAPNLKRVEIDNCQDMKEIIDSEKFGEVP 277 (370)
Q Consensus 201 L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~l~--~l~~L~~L~L~~~~~~~~~~~~~~~~~~~ 277 (370)
|++++|.++.++...+..... ....+++|++|++++|+++.++ .+. .+++|+.|+|++|.... +
T Consensus 462 L~Ls~N~l~~i~~~~~~~~~~--~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-i---------- 528 (636)
T 4eco_A 462 INLMGNMLTEIPKNSLKDENE--NFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-F---------- 528 (636)
T ss_dssp EECCSSCCSBCCSSSSEETTE--ECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-C----------
T ss_pred EECCCCCCCCcCHHHhccccc--cccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-c----------
Confidence 777777777655443210000 0012348889999888777765 344 78889999998887543 2
Q ss_pred ccccCCccccccccccccccc------cccccccCCCccCCCcceEeecCCCCCCCCCCCCCCCCcceeEEechHhhhhh
Q 017525 278 AEVMANLIPFARLERLILEEL------KNLKTVHSKALPFPHLKEMSVDRCPLLKKLPLDCNRGLERKIVIKGQRRWWNE 351 (370)
Q Consensus 278 ~~~~~~~~~~p~L~~L~l~~~------~~l~~i~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~ 351 (370)
+..+..+++|+.|+++++ .-...++.....+++|++|++++|. ++.+|.... ..+..+..+.+-+..
T Consensus 529 ---p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~~~---~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 529 ---PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRKVNEKIT---PNISVLDIKDNPNIS 601 (636)
T ss_dssp ---CCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCCC---TTCCEEECCSCTTCE
T ss_pred ---ChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc-CCccCHhHh---CcCCEEECcCCCCcc
Confidence 346778999999999653 3345566666779999999999985 588887643 466666665554433
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=1.5e-24 Score=217.23 Aligned_cols=305 Identities=10% Similarity=0.096 Sum_probs=208.4
Q ss_pred ccCC-C--CCCCCCEEecCCCcCC-CCChHHHhcCCCCcEEEccCCC-----cchhhhhccc-------cCCEEeccCCc
Q 017525 8 LVES-P--VCPRLRTLFLSSNIFH-RVNSDFFQSMASLRVLKWSYSN-----PLLFEISKVV-------SLQHLDLSHSR 71 (370)
Q Consensus 8 l~~~-~--~l~~L~~L~l~~~~i~-~~~~~~~~~l~~L~~L~l~~~~-----~~~~~~~~l~-------~L~~L~l~~~~ 71 (370)
+|.. . ++++|+.|++++|.+. .+|.. +.++++|++|++++|. .+|..++.++ +|++|++++|.
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence 7887 5 8999999999999765 56655 8999999999999996 4787777776 99999999999
Q ss_pred ccccCc--ccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCC-ccE
Q 017525 72 IESLPI--EFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEH-LSV 148 (370)
Q Consensus 72 l~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~ 148 (370)
++.+|. .++.+++|+.|++++|. +..+| . ++++++|+.|++++| .+..+| ..+..+++ |+.
T Consensus 560 L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~-~~~L~~L~~L~Ls~N-~l~~lp------------~~l~~l~~~L~~ 623 (876)
T 4ecn_A 560 LEEFPASASLQKMVKLGLLDCVHNK-VRHLE-A-FGTNVKLTDLKLDYN-QIEEIP------------EDFCAFTDQVEG 623 (876)
T ss_dssp CCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-C-CCTTSEESEEECCSS-CCSCCC------------TTSCEECTTCCE
T ss_pred CCccCChhhhhcCCCCCEEECCCCC-cccch-h-hcCCCcceEEECcCC-ccccch------------HHHhhccccCCE
Confidence 999998 89999999999999994 55888 3 899999999999999 666433 33555555 666
Q ss_pred EEEEecchhhhHhhhcCCCC---------------------------CccccCcEEecCcCCCCccccccccccCCCcEE
Q 017525 149 FTITLNNFHAFQRLLGSCMP---------------------------QYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTL 201 (370)
Q Consensus 149 l~l~~~~~~~~~~~~~~~~~---------------------------~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L 201 (370)
|+++.|.+..++........ ...+|+.|.+.++.-. ......+..+++|+.|
T Consensus 624 L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L 702 (876)
T 4ecn_A 624 LGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTI 702 (876)
T ss_dssp EECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEE
T ss_pred EECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEE
Confidence 66666655444322111110 1012344444433222 1111123356777777
Q ss_pred EEecCCcccceeccCCCccccccccccccCcEEEEecccccccC-ccc--CCCCccEEeeccCcchHHhhhccccCCCcc
Q 017525 202 QLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHAT-WLF--LAPNLKRVEIDNCQDMKEIIDSEKFGEVPA 278 (370)
Q Consensus 202 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~l~--~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 278 (370)
++++|.++.++...+..... ....+++|++|+|++|+++.++ .+. .+++|+.|+|++|....
T Consensus 703 ~Ls~N~L~~ip~~~~~~~~~--~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~------------- 767 (876)
T 4ecn_A 703 ILSNNLMTSIPENSLKPKDG--NYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS------------- 767 (876)
T ss_dssp ECCSCCCSCCCTTSSSCTTS--CCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-------------
T ss_pred ECCCCcCCccChHHhccccc--cccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-------------
Confidence 77777777665443321000 0023458888899888777765 344 78889999998886433
Q ss_pred cccCCcccccccccccccccc------ccccccCCCccCCCcceEeecCCCCCCCCCCCCCCCCcceeEEechHhhhh
Q 017525 279 EVMANLIPFARLERLILEELK------NLKTVHSKALPFPHLKEMSVDRCPLLKKLPLDCNRGLERKIVIKGQRRWWN 350 (370)
Q Consensus 279 ~~~~~~~~~p~L~~L~l~~~~------~l~~i~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~ 350 (370)
++..+..+++|+.|+++++. -...++.....+++|+.|++++|. ++.+|.... ..+..+..+.+-+.
T Consensus 768 -lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~l~---~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 768 -FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-IRKVDEKLT---PQLYILDIADNPNI 840 (876)
T ss_dssp -CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCCC---SSSCEEECCSCTTC
T ss_pred -cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC-CCccCHhhc---CCCCEEECCCCCCC
Confidence 23467788999999997632 234555566678999999999885 588887643 35666665444443
No 16
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1.5e-24 Score=211.62 Aligned_cols=279 Identities=17% Similarity=0.163 Sum_probs=192.2
Q ss_pred CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCcccccCc-ccccCCcccE
Q 017525 12 PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESLPI-EFKCLVNLKC 87 (370)
Q Consensus 12 ~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~ 87 (370)
..+++++.++++++.++.+|+.++..+++|++|++++|. ..|..++.+++|++|++++|.++.+|. .++.+++|++
T Consensus 48 l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 457899999999999999999989999999999999998 445588999999999999999987776 4689999999
Q ss_pred EeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCC
Q 017525 88 LNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCM 167 (370)
Q Consensus 88 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~ 167 (370)
|++++| .+..+|..+++++++|++|++++| .+..+ .+..+..+++|+.|++++|.+..++ +....
T Consensus 128 L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~-----------~~~~~~~l~~L~~L~L~~N~l~~~~-~~~l~- 192 (597)
T 3oja_B 128 LVLERN-DLSSLPRGIFHNTPKLTTLSMSNN-NLERI-----------EDDTFQATTSLQNLQLSSNRLTHVD-LSLIP- 192 (597)
T ss_dssp EECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCBC-----------CTTTTTTCTTCCEEECTTSCCSBCC-GGGCT-
T ss_pred EEeeCC-CCCCCCHHHhccCCCCCEEEeeCC-cCCCC-----------ChhhhhcCCcCcEEECcCCCCCCcC-hhhhh-
Confidence 999999 677888776899999999999999 77632 2445778889999999988766543 12222
Q ss_pred CCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCC--------c-c-ccccccccccCcEEEEe
Q 017525 168 PQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGE--------V-K-RVLEISGFHSLKNVYIS 237 (370)
Q Consensus 168 ~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~--------~-~-~~~~~~~~~~L~~L~l~ 237 (370)
.+..+.+..+.- ..+...++|+.|++++|.+..++...... + . .......+++|++|+++
T Consensus 193 ----~L~~L~l~~n~l------~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls 262 (597)
T 3oja_B 193 ----SLFHANVSYNLL------STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLS 262 (597)
T ss_dssp ----TCSEEECCSSCC------SEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECC
T ss_pred ----hhhhhhcccCcc------ccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECC
Confidence 244454443321 12223334455555444444332111000 0 0 00001456667777777
Q ss_pred ccccccc--CcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccccccccCCCccCCCcc
Q 017525 238 RSKFRHA--TWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSKALPFPHLK 315 (370)
Q Consensus 238 ~~~l~~~--~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~~~~~~~L~ 315 (370)
+|.++++ ..++.+++|+.|+|++|.... ++.....+|+|+.|++++| .+..++.....+++|+
T Consensus 263 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--------------l~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~ 327 (597)
T 3oja_B 263 YNELEKIMYHPFVKMQRLERLYISNNRLVA--------------LNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLE 327 (597)
T ss_dssp SSCCCEEESGGGTTCSSCCEEECTTSCCCE--------------EECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCS
T ss_pred CCccCCCCHHHhcCccCCCEEECCCCCCCC--------------CCcccccCCCCcEEECCCC-CCCccCcccccCCCCC
Confidence 7666553 345566777777777665322 2234566888888888887 5666666666788888
Q ss_pred eEeecCCCCCCCCCCC
Q 017525 316 EMSVDRCPLLKKLPLD 331 (370)
Q Consensus 316 ~L~l~~c~~L~~l~~~ 331 (370)
.|++++|. ++.+|++
T Consensus 328 ~L~L~~N~-l~~~~~~ 342 (597)
T 3oja_B 328 NLYLDHNS-IVTLKLS 342 (597)
T ss_dssp EEECCSSC-CCCCCCC
T ss_pred EEECCCCC-CCCcChh
Confidence 88888874 6666644
No 17
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.92 E-value=1.1e-24 Score=197.20 Aligned_cols=96 Identities=21% Similarity=0.273 Sum_probs=45.8
Q ss_pred CCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cc-hhhhhccccCCEEeccCCccccc-CcccccCCcccEEecc
Q 017525 16 RLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PL-LFEISKVVSLQHLDLSHSRIESL-PIEFKCLVNLKCLNLE 91 (370)
Q Consensus 16 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~-~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~ 91 (370)
+++.++++++.++.+|..+ .++|++|++++|. .+ +..+.++++|++|++++|.++.+ |..++.+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCccccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 3555555555555554431 2445555555554 22 33445555555555555555433 3344555555555555
Q ss_pred CcccccccCcccccCCCCCcEEEcccc
Q 017525 92 YTYGISRIPPKVISNLKILETLRMYEC 118 (370)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~L~~L~l~~~ 118 (370)
+| .+..+|.. +. ++|++|++++|
T Consensus 111 ~n-~l~~l~~~-~~--~~L~~L~l~~n 133 (332)
T 2ft3_A 111 KN-HLVEIPPN-LP--SSLVELRIHDN 133 (332)
T ss_dssp SS-CCCSCCSS-CC--TTCCEEECCSS
T ss_pred CC-cCCccCcc-cc--ccCCEEECCCC
Confidence 54 33344433 11 45555555555
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=7.9e-25 Score=219.35 Aligned_cols=235 Identities=13% Similarity=0.162 Sum_probs=163.0
Q ss_pred CcccccccCC-CCCCCCCEEecCCCcCCC------------------CChHHHh--cCCCCcEEEccCCC---cchhhhh
Q 017525 2 TNHIENLVES-PVCPRLRTLFLSSNIFHR------------------VNSDFFQ--SMASLRVLKWSYSN---PLLFEIS 57 (370)
Q Consensus 2 ~n~l~~l~~~-~~l~~L~~L~l~~~~i~~------------------~~~~~~~--~l~~L~~L~l~~~~---~~~~~~~ 57 (370)
+|.++.+|.. .++++|+.|++++|.++. +|.. ++ ++++|++|++++|. .+|..++
T Consensus 434 ~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~-l~f~~L~~L~~L~Ls~N~l~~~iP~~l~ 512 (876)
T 4ecn_A 434 TNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE-LSWSNLKDLTDVELYNCPNMTQLPDFLY 512 (876)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEESCTTCCSCCGGGG
T ss_pred cCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChh-hhhccCCCCCEEECcCCCCCccChHHHh
Confidence 4677778887 899999999999999988 8887 45 99999999999997 8899999
Q ss_pred ccccCCEEeccCCc-cc--ccCcccccCC-------cccEEeccCcccccccCc-ccccCCCCCcEEEccccCCCccccc
Q 017525 58 KVVSLQHLDLSHSR-IE--SLPIEFKCLV-------NLKCLNLEYTYGISRIPP-KVISNLKILETLRMYECAALPQARD 126 (370)
Q Consensus 58 ~l~~L~~L~l~~~~-l~--~lp~~~~~l~-------~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~ 126 (370)
++++|++|++++|. ++ .+|..++.++ +|+.|++++| .+..+|. ..++++++|++|++++| .+..
T Consensus 513 ~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l~~L~~L~~L~Ls~N-~l~~--- 587 (876)
T 4ecn_A 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHN-KVRH--- 587 (876)
T ss_dssp GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHHHTTCTTCCEEECTTS-CCCB---
T ss_pred CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCccCChhhhhcCCCCCEEECCCC-Cccc---
Confidence 99999999999998 87 4887666665 9999999999 4558887 23999999999999999 6652
Q ss_pred ccccCCcchhhhhcccCCCccEEEEEecchhhhHhh-hcCCCCCccccCcEEecCcCCCCcccccccccc--CCCcEEEE
Q 017525 127 SILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRL-LGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASL--RHLQTLQL 203 (370)
Q Consensus 127 ~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~-~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l--~~L~~L~l 203 (370)
.+ .+..+++|+.|+++.|.+..++.. ..... .|+.|.+.++.-.... ..+..+ ++|+.|++
T Consensus 588 ---------lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~----~L~~L~Ls~N~L~~lp--~~~~~~~~~~L~~L~L 651 (876)
T 4ecn_A 588 ---------LE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTD----QVEGLGFSHNKLKYIP--NIFNAKSVYVMGSVDF 651 (876)
T ss_dssp ---------CC-CCCTTSEESEEECCSSCCSCCCTTSCEECT----TCCEEECCSSCCCSCC--SCCCTTCSSCEEEEEC
T ss_pred ---------ch-hhcCCCcceEEECcCCccccchHHHhhccc----cCCEEECcCCCCCcCc--hhhhccccCCCCEEEC
Confidence 23 678889999999999987755432 22221 2677777766533211 223333 34778888
Q ss_pred ecCCcccceeccCCCccccccccccccCcEEEEecccccccCc--ccCCCCccEEeeccCc
Q 017525 204 TYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATW--LFLAPNLKRVEIDNCQ 262 (370)
Q Consensus 204 ~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--l~~l~~L~~L~L~~~~ 262 (370)
++|.+......+... +.....++|++|++++|+++.++. +..+++|+.|+|++|.
T Consensus 652 s~N~l~g~ip~l~~~----l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~ 708 (876)
T 4ecn_A 652 SYNKIGSEGRNISCS----MDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL 708 (876)
T ss_dssp CSSCTTTTSSSCSSC----TTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC
T ss_pred cCCcCCCccccchhh----hccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc
Confidence 777765432211100 000122355555555554444432 1244555555555543
No 19
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=1.4e-23 Score=203.36 Aligned_cols=116 Identities=22% Similarity=0.313 Sum_probs=96.3
Q ss_pred CcccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCcccccCcc
Q 017525 2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESLPIE 78 (370)
Q Consensus 2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~lp~~ 78 (370)
+|.++.+|... .++|++|++++|.++.+++..+.++++|++|++++|. ..|..+.++++|++|++++|.++.+|..
T Consensus 40 ~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~ 118 (562)
T 3a79_B 40 NRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC 118 (562)
T ss_dssp TSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC
T ss_pred CCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc
Confidence 46788888752 3899999999999998887668999999999999998 4477789999999999999999988877
Q ss_pred cccCCcccEEeccCcccccccCc-ccccCCCCCcEEEccccCCCc
Q 017525 79 FKCLVNLKCLNLEYTYGISRIPP-KVISNLKILETLRMYECAALP 122 (370)
Q Consensus 79 ~~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~ 122 (370)
.+++|++|++++| .+..++. ..++++++|++|++++| .+.
T Consensus 119 --~l~~L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n-~l~ 159 (562)
T 3a79_B 119 --PMASLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAA-KFR 159 (562)
T ss_dssp --CCTTCSEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECS-BCC
T ss_pred --ccccCCEEECCCC-CccccCchHhhcccCcccEEecCCC-ccc
Confidence 8999999999998 4555442 34889999999999888 554
No 20
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.92 E-value=2.7e-24 Score=207.83 Aligned_cols=107 Identities=24% Similarity=0.287 Sum_probs=49.1
Q ss_pred CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--c-chhhhhccccCCEEeccCCcccc--cCcccccCCccc
Q 017525 12 PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--P-LLFEISKVVSLQHLDLSHSRIES--LPIEFKCLVNLK 86 (370)
Q Consensus 12 ~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~-~~~~~~~l~~L~~L~l~~~~l~~--lp~~~~~l~~L~ 86 (370)
.++++|++|++++|.++.+++..+.++++|++|++++|. . .+..++++++|++|++++|.++. .|..++.+++|+
T Consensus 47 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 126 (549)
T 2z81_A 47 RACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ 126 (549)
T ss_dssp SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred hcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCcc
Confidence 344444444444444444443334444455555555444 2 22224444555555555554442 233444455555
Q ss_pred EEeccCcccccccCcccccCCCCCcEEEcccc
Q 017525 87 CLNLEYTYGISRIPPKVISNLKILETLRMYEC 118 (370)
Q Consensus 87 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 118 (370)
+|++++|..++.++...+.++++|++|++++|
T Consensus 127 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n 158 (549)
T 2z81_A 127 TLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158 (549)
T ss_dssp EEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred EEECCCCccccccCHhhhhcccccCeeeccCC
Confidence 55555443344444333445555555555544
No 21
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=4.2e-25 Score=216.77 Aligned_cols=239 Identities=13% Similarity=0.182 Sum_probs=170.5
Q ss_pred CcccccccCC-CCCCCCCEEecCCCcCCC------------------CChHHHh--cCCCCcEEEccCCC---cchhhhh
Q 017525 2 TNHIENLVES-PVCPRLRTLFLSSNIFHR------------------VNSDFFQ--SMASLRVLKWSYSN---PLLFEIS 57 (370)
Q Consensus 2 ~n~l~~l~~~-~~l~~L~~L~l~~~~i~~------------------~~~~~~~--~l~~L~~L~l~~~~---~~~~~~~ 57 (370)
+|.++.+|.. .++++|++|++++|.++. +|.. +. ++++|++|++++|. .+|..++
T Consensus 192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred cCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcCCccChHHHh
Confidence 4678888887 899999999999999988 8887 67 99999999999998 7899999
Q ss_pred ccccCCEEeccCCc-cc--ccCcccccC------CcccEEeccCcccccccCc-ccccCCCCCcEEEccccCCCcccccc
Q 017525 58 KVVSLQHLDLSHSR-IE--SLPIEFKCL------VNLKCLNLEYTYGISRIPP-KVISNLKILETLRMYECAALPQARDS 127 (370)
Q Consensus 58 ~l~~L~~L~l~~~~-l~--~lp~~~~~l------~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~ 127 (370)
++++|++|++++|+ ++ .+|..++.+ ++|++|++++| .+..+|. ..++++++|++|++++| .+..
T Consensus 271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N-~l~g---- 344 (636)
T 4eco_A 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYN-QLEG---- 344 (636)
T ss_dssp TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEECCSC-CCEE----
T ss_pred cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhhhccCCCCCEEeCcCC-cCcc----
Confidence 99999999999998 87 588888776 99999999999 4558887 23999999999999999 6651
Q ss_pred cccCCcchhhhhcccCCCccEEEEEecchhhhHhh-hcCCCCCccccCcEEecCcCCCCccccccccc--cCCCcEEEEe
Q 017525 128 ILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRL-LGSCMPQYVSTPSLCLSHFNNSKSLGVFSLAS--LRHLQTLQLT 204 (370)
Q Consensus 128 ~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~-~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~--l~~L~~L~l~ 204 (370)
..+ .+..+++|+.|+++.|.+..++.. ..... .|+.+.+.++.-.... ..+.. +++|++|+++
T Consensus 345 -------~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~----~L~~L~Ls~N~l~~lp--~~~~~~~l~~L~~L~Ls 410 (636)
T 4eco_A 345 -------KLP-AFGSEIKLASLNLAYNQITEIPANFCGFTE----QVENLSFAHNKLKYIP--NIFDAKSVSVMSAIDFS 410 (636)
T ss_dssp -------ECC-CCEEEEEESEEECCSSEEEECCTTSEEECT----TCCEEECCSSCCSSCC--SCCCTTCSSCEEEEECC
T ss_pred -------chh-hhCCCCCCCEEECCCCccccccHhhhhhcc----cCcEEEccCCcCcccc--hhhhhcccCccCEEECc
Confidence 223 677889999999999987755432 22221 2677777766533221 23333 3478888888
Q ss_pred cCCcccceeccCCCccccccccccccCcEEEEecccccccCc--ccCCCCccEEeeccCcc
Q 017525 205 YNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATW--LFLAPNLKRVEIDNCQD 263 (370)
Q Consensus 205 ~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--l~~l~~L~~L~L~~~~~ 263 (370)
+|.+.......+++... ..-.+++|++|++++|+++.++. +..+++|+.|++++|..
T Consensus 411 ~N~l~~~~p~~l~~~~~--~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l 469 (636)
T 4eco_A 411 YNEIGSVDGKNFDPLDP--TPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNML 469 (636)
T ss_dssp SSCTTTTTTCSSCTTCS--SCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCC
T ss_pred CCcCCCcchhhhccccc--ccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCC
Confidence 88776543332220000 00134466666666665555442 23456666666666553
No 22
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=7e-24 Score=200.78 Aligned_cols=233 Identities=17% Similarity=0.230 Sum_probs=126.3
Q ss_pred CcccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCccc
Q 017525 2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEF 79 (370)
Q Consensus 2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~ 79 (370)
+|.++.++...++++|+.|++++|.+..+++ +.++++|++|++++|. .++. +..+++|++|++++|.++.++. +
T Consensus 77 ~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~ 152 (466)
T 1o6v_A 77 NNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISA-L 152 (466)
T ss_dssp SSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGG-G
T ss_pred CCccCCchhhhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCCChh-h
Confidence 4677777777889999999999999888876 7899999999999998 4443 8889999999999998876653 4
Q ss_pred ccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccc---------cCCcchhhhhcccCCCccEEE
Q 017525 80 KCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSIL---------FGDCRVLVEELLGLEHLSVFT 150 (370)
Q Consensus 80 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~---------~~~~~~~~~~l~~l~~L~~l~ 150 (370)
+.+++|+.|+++++ +...+. +.++++|++|++++| .+..++.-.. .+..-.....+..+++|+.++
T Consensus 153 ~~l~~L~~L~l~~~--~~~~~~--~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ 227 (466)
T 1o6v_A 153 SGLTSLQQLSFGNQ--VTDLKP--LANLTTLERLDISSN-KVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 227 (466)
T ss_dssp TTCTTCSEEEEEES--CCCCGG--GTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEE
T ss_pred ccCCcccEeecCCc--ccCchh--hccCCCCCEEECcCC-cCCCChhhccCCCCCEEEecCCcccccccccccCCCCEEE
Confidence 55555555555421 222211 444555555555544 3321110000 000000001133345555555
Q ss_pred EEecchhhhHhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCcccccccccccc
Q 017525 151 ITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHS 230 (370)
Q Consensus 151 l~~~~~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~ 230 (370)
++++....++.+.... +|+.+++.++.-.... .+..+++|+.|++++|.+..++. + ..+++
T Consensus 228 l~~n~l~~~~~l~~l~-----~L~~L~l~~n~l~~~~---~~~~l~~L~~L~l~~n~l~~~~~-~----------~~l~~ 288 (466)
T 1o6v_A 228 LNGNQLKDIGTLASLT-----NLTDLDLANNQISNLA---PLSGLTKLTELKLGANQISNISP-L----------AGLTA 288 (466)
T ss_dssp CCSSCCCCCGGGGGCT-----TCSEEECCSSCCCCCG---GGTTCTTCSEEECCSSCCCCCGG-G----------TTCTT
T ss_pred CCCCCcccchhhhcCC-----CCCEEECCCCccccch---hhhcCCCCCEEECCCCccCcccc-c----------cCCCc
Confidence 5555444333332222 2444444443322111 24445555555555555544322 1 33455
Q ss_pred CcEEEEecccccccCcccCCCCccEEeeccCc
Q 017525 231 LKNVYISRSKFRHATWLFLAPNLKRVEIDNCQ 262 (370)
Q Consensus 231 L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~ 262 (370)
|++|++++|++++++.+..+++|+.|++++|.
T Consensus 289 L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~ 320 (466)
T 1o6v_A 289 LTNLELNENQLEDISPISNLKNLTYLTLYFNN 320 (466)
T ss_dssp CSEEECCSSCCSCCGGGGGCTTCSEEECCSSC
T ss_pred cCeEEcCCCcccCchhhcCCCCCCEEECcCCc
Confidence 55555555555544444455555555555554
No 23
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=4.9e-24 Score=200.81 Aligned_cols=255 Identities=15% Similarity=0.116 Sum_probs=128.9
Q ss_pred CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccccCCcccEEe
Q 017525 12 PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLN 89 (370)
Q Consensus 12 ~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~ 89 (370)
.++++|++|++++|.++.+| . +..+++|++|++++|. .+| ++.+++|++|++++|.++.++ ++.+++|++|+
T Consensus 39 ~~l~~L~~L~Ls~n~l~~~~-~-l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSITDMT-G-IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLN 112 (457)
T ss_dssp HHHTTCCEEECCSSCCCCCT-T-GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEE
T ss_pred hHcCCCCEEEccCCCcccCh-h-hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEE
Confidence 44666666666666666654 2 5666666666666666 333 566666666666666666553 55666666666
Q ss_pred ccCcccccccCcccccCCCCCcEEEccccCCCccccccccc-------CCc-chhhhhcccCCCccEEEEEecchhhhHh
Q 017525 90 LEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILF-------GDC-RVLVEELLGLEHLSVFTITLNNFHAFQR 161 (370)
Q Consensus 90 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-------~~~-~~~~~~l~~l~~L~~l~l~~~~~~~~~~ 161 (370)
+++| .+..++ ++++++|++|++++| .+..++..-.. ... ......+..+++|+.++++.+.+..++
T Consensus 113 L~~N-~l~~l~---~~~l~~L~~L~l~~N-~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~- 186 (457)
T 3bz5_A 113 CDTN-KLTKLD---VSQNPLLTYLNCARN-TLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD- 186 (457)
T ss_dssp CCSS-CCSCCC---CTTCTTCCEEECTTS-CCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC-
T ss_pred CCCC-cCCeec---CCCCCcCCEEECCCC-ccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec-
Confidence 6666 333332 556666666666666 44422100000 000 000002344555666666655554433
Q ss_pred hhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccc
Q 017525 162 LLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKF 241 (370)
Q Consensus 162 ~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 241 (370)
+. .+. .++.+.+.++.-. .. .+..+++|+.|++++|.++.++ + ..+++|++|++++|++
T Consensus 187 l~---~l~--~L~~L~l~~N~l~-~~---~l~~l~~L~~L~Ls~N~l~~ip--~----------~~l~~L~~L~l~~N~l 245 (457)
T 3bz5_A 187 VS---QNK--LLNRLNCDTNNIT-KL---DLNQNIQLTFLDCSSNKLTEID--V----------TPLTQLTYFDCSVNPL 245 (457)
T ss_dssp CT---TCT--TCCEEECCSSCCS-CC---CCTTCTTCSEEECCSSCCSCCC--C----------TTCTTCSEEECCSSCC
T ss_pred cc---cCC--CCCEEECcCCcCC-ee---ccccCCCCCEEECcCCcccccC--c----------cccCCCCEEEeeCCcC
Confidence 11 111 2444554443221 11 2555566666666666666543 1 4456666666666666
Q ss_pred cccCcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCcccccccccccccccccccccc
Q 017525 242 RHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVH 305 (370)
Q Consensus 242 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~ 305 (370)
++++ .+.+++|+.|+++++.. +.+.-..+ .....+ ....+++|+.|++++|..++.++
T Consensus 246 ~~~~-~~~l~~L~~L~l~~n~L-~~L~l~~n--~~~~~~--~~~~l~~L~~L~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 246 TELD-VSTLSKLTTLHCIQTDL-LEIDLTHN--TQLIYF--QAEGCRKIKELDVTHNTQLYLLD 303 (457)
T ss_dssp SCCC-CTTCTTCCEEECTTCCC-SCCCCTTC--TTCCEE--ECTTCTTCCCCCCTTCTTCCEEE
T ss_pred CCcC-HHHCCCCCEEeccCCCC-CEEECCCC--ccCCcc--cccccccCCEEECCCCcccceec
Confidence 5554 34455555444443321 11100000 000001 23466788888888876655554
No 24
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.92 E-value=9.8e-24 Score=190.81 Aligned_cols=230 Identities=18% Similarity=0.225 Sum_probs=135.1
Q ss_pred cccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCcccccCccc
Q 017525 3 NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESLPIEF 79 (370)
Q Consensus 3 n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~lp~~~ 79 (370)
+.++.+|.. -.++++.|++++|.++.+++..+.++++|++|++++|. ..|..+..+++|++|++++|.++.+|..+
T Consensus 41 ~~l~~lp~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~ 119 (330)
T 1xku_A 41 LGLEKVPKD-LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM 119 (330)
T ss_dssp SCCCSCCCS-CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC
T ss_pred CCccccCcc-CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhh
Confidence 345555543 23577777777777777766556777777777777776 33666777777777777777777776654
Q ss_pred ccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhh
Q 017525 80 KCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAF 159 (370)
Q Consensus 80 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~ 159 (370)
. ++|++|++++| .+..++...+.++++|++|++++| .+...+ .....+..+++|+.++++.+....+
T Consensus 120 ~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~---------~~~~~~~~l~~L~~L~l~~n~l~~l 186 (330)
T 1xku_A 120 P--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTN-PLKSSG---------IENGAFQGMKKLSYIRIADTNITTI 186 (330)
T ss_dssp C--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSS-CCCGGG---------BCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred c--ccccEEECCCC-cccccCHhHhcCCccccEEECCCC-cCCccC---------cChhhccCCCCcCEEECCCCccccC
Confidence 3 67777777777 455555545677777777777777 553211 2234556667777777776665443
Q ss_pred HhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecc
Q 017525 160 QRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRS 239 (370)
Q Consensus 160 ~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 239 (370)
+.... . .|+.+.+.++. ++......+..+++|++|++++|.++.++...+ ..+++|++|++++|
T Consensus 187 ~~~~~-----~-~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---------~~l~~L~~L~L~~N 250 (330)
T 1xku_A 187 PQGLP-----P-SLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL---------ANTPHLRELHLNNN 250 (330)
T ss_dssp CSSCC-----T-TCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSSCCCEECTTTG---------GGSTTCCEEECCSS
T ss_pred Ccccc-----c-cCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCceeChhhc---------cCCCCCCEEECCCC
Confidence 22111 1 35555555443 222212345555566666666655555433222 34555666666666
Q ss_pred cccccC-cccCCCCccEEeeccCc
Q 017525 240 KFRHAT-WLFLAPNLKRVEIDNCQ 262 (370)
Q Consensus 240 ~l~~~~-~l~~l~~L~~L~L~~~~ 262 (370)
+++.++ ++..+++|+.|++++|.
T Consensus 251 ~l~~lp~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 251 KLVKVPGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp CCSSCCTTTTTCSSCCEEECCSSC
T ss_pred cCccCChhhccCCCcCEEECCCCc
Confidence 555443 34555566666666554
No 25
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.92 E-value=6.5e-24 Score=206.04 Aligned_cols=120 Identities=27% Similarity=0.246 Sum_probs=92.8
Q ss_pred CcccccccCC--CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCcccccC
Q 017525 2 TNHIENLVES--PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESLP 76 (370)
Q Consensus 2 ~n~l~~l~~~--~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~lp 76 (370)
+|.++.+++. .++++|++|++++|.++.+++..+.++++|++|++++|. ..|..+.++++|++|++++|.++.++
T Consensus 37 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~ 116 (570)
T 2z63_A 37 FNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116 (570)
T ss_dssp SCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCST
T ss_pred CCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCC
Confidence 4667777654 678888888888888887777667888888888888887 33467888888888888888888776
Q ss_pred c-ccccCCcccEEeccCccccc-ccCcccccCCCCCcEEEccccCCCcc
Q 017525 77 I-EFKCLVNLKCLNLEYTYGIS-RIPPKVISNLKILETLRMYECAALPQ 123 (370)
Q Consensus 77 ~-~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~ 123 (370)
. .++.+++|++|++++|.... .+|.. ++++++|++|++++| .+..
T Consensus 117 ~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n-~l~~ 163 (570)
T 2z63_A 117 NFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSN-KIQS 163 (570)
T ss_dssp TCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTS-CCCE
T ss_pred CccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCC-ccce
Confidence 5 57888889999998884333 35655 888899999998888 5543
No 26
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.92 E-value=1e-23 Score=206.27 Aligned_cols=294 Identities=16% Similarity=0.127 Sum_probs=192.2
Q ss_pred CcccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCccccc-Cc
Q 017525 2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESL-PI 77 (370)
Q Consensus 2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~l-p~ 77 (370)
++.++.+|.. -.+++++|++++|.++.+++..+.++++|++|++++|. ..|..+.++++|++|++++|.++.+ |.
T Consensus 20 ~~~l~~ip~~-~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~ 98 (606)
T 3vq2_A 20 DQKLSKVPDD-IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPG 98 (606)
T ss_dssp TSCCSSCCTT-SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTT
T ss_pred CCCcccCCCC-CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChh
Confidence 4568888875 33899999999999998888669999999999999998 4467889999999999999999877 67
Q ss_pred ccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchh
Q 017525 78 EFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFH 157 (370)
Q Consensus 78 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~ 157 (370)
.++.+++|++|++++| .+..++...++++++|++|++++| .+..+ ..+..+..+++|+.|+++++...
T Consensus 99 ~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~----------~lp~~~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 99 SFSGLTSLENLVAVET-KLASLESFPIGQLITLKKLNVAHN-FIHSC----------KLPAYFSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp SSTTCTTCCEEECTTS-CCCCSSSSCCTTCTTCCEEECCSS-CCCCC----------CCCGGGGTCTTCCEEECCSSCCC
T ss_pred hcCCcccCCEEEccCC-ccccccccccCCCCCCCEEeCCCC-cccce----------echHhHhhcCCCCEEEccCCcce
Confidence 8999999999999999 556666445999999999999999 66521 12345566667777776665433
Q ss_pred hh-----HhhhcCC-------------------CCCccccCcEEecCcCC------------------------------
Q 017525 158 AF-----QRLLGSC-------------------MPQYVSTPSLCLSHFNN------------------------------ 183 (370)
Q Consensus 158 ~~-----~~~~~~~-------------------~~~~l~L~~l~l~~~~~------------------------------ 183 (370)
.. ..+.... .+....++.+.+.++..
T Consensus 167 ~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 246 (606)
T 3vq2_A 167 TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN 246 (606)
T ss_dssp EECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC
T ss_pred ecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCc
Confidence 21 1111100 00111234444433211
Q ss_pred ---------------------------CCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEE
Q 017525 184 ---------------------------SKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYI 236 (370)
Q Consensus 184 ---------------------------~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l 236 (370)
.... ...+..+++|+.|+++++.+..++ .+ ..+++|++|++
T Consensus 247 l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~l~-~l----------~~~~~L~~L~l 314 (606)
T 3vq2_A 247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDD-IVKFHCLANVSAMSLAGVSIKYLE-DV----------PKHFKWQSLSI 314 (606)
T ss_dssp CSCCCGGGGTTGGGSEEEEEEECCCTTCCGG-GGSCGGGTTCSEEEEESCCCCCCC-CC----------CTTCCCSEEEE
T ss_pred ccccChHHhhhhhhccHhheecccccccccc-ccccccCCCCCEEEecCccchhhh-hc----------cccccCCEEEc
Confidence 1111 122556778888888888777665 22 45677777777
Q ss_pred ecccccccCcccCCCCccEEeeccCcchHHhhhccccCCC----------cc--cccCCccccccccccccccccccccc
Q 017525 237 SRSKFRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEV----------PA--EVMANLIPFARLERLILEELKNLKTV 304 (370)
Q Consensus 237 ~~~~l~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~----------~~--~~~~~~~~~p~L~~L~l~~~~~l~~i 304 (370)
++|+++.++.+ .+++|+.|++++|..+..... .....+ .. ..+..+..+++|+.|++++| .+..+
T Consensus 315 ~~n~l~~lp~~-~l~~L~~L~l~~n~~~~~~~~-~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~ 391 (606)
T 3vq2_A 315 IRCQLKQFPTL-DLPFLKSLTLTMNKGSISFKK-VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN-GAIIM 391 (606)
T ss_dssp ESCCCSSCCCC-CCSSCCEEEEESCSSCEECCC-CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSC-SEEEE
T ss_pred ccccCcccccC-CCCccceeeccCCcCccchhh-ccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCC-ccccc
Confidence 77766666655 666677777766643322100 000000 00 01223456677777777766 35555
Q ss_pred cCCCccCCCcceEeecCCC
Q 017525 305 HSKALPFPHLKEMSVDRCP 323 (370)
Q Consensus 305 ~~~~~~~~~L~~L~l~~c~ 323 (370)
+.....+++|+.|++.+|.
T Consensus 392 ~~~~~~l~~L~~L~l~~n~ 410 (606)
T 3vq2_A 392 SANFMGLEELQHLDFQHST 410 (606)
T ss_dssp CCCCTTCTTCCEEECTTSE
T ss_pred hhhccCCCCCCeeECCCCc
Confidence 5555567777888777764
No 27
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.91 E-value=1.1e-23 Score=205.86 Aligned_cols=274 Identities=15% Similarity=0.174 Sum_probs=195.6
Q ss_pred CCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCccccc-CcccccCCcccEEeccC
Q 017525 16 RLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESL-PIEFKCLVNLKCLNLEY 92 (370)
Q Consensus 16 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~ 92 (370)
+|+.|++++|.++.+++..+..+++|++|++++|. .+|..+..+++|++|++++|.++.+ |..++.+++|++|++++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence 67888888888888888778889999999999988 7888888899999999999988765 44788899999999998
Q ss_pred cccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhH--hhhcCCCCCc
Q 017525 93 TYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQ--RLLGSCMPQY 170 (370)
Q Consensus 93 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~--~~~~~~~~~~ 170 (370)
|.....++...+.++++|++|++++| .+.... .....+..+++|+.++++.+...... .+....
T Consensus 335 n~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~---------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~---- 400 (606)
T 3t6q_A 335 NTKRLELGTGCLENLENLRELDLSHD-DIETSD---------CCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP---- 400 (606)
T ss_dssp CSSCCBCCSSTTTTCTTCCEEECCSS-CCCEEE---------ESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCT----
T ss_pred CCcccccchhhhhccCcCCEEECCCC-cccccc---------CcchhcccCCCCCEEECCCCcCCcCCHHHhcCCc----
Confidence 86666777666888999999999988 665322 22455777888888888888754432 122222
Q ss_pred cccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEeccccccc-----C
Q 017525 171 VSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHA-----T 245 (370)
Q Consensus 171 l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-----~ 245 (370)
.|+.+.+.++.-........+..+++|++|++++|.+.......+ ..+++|++|++++|++++. .
T Consensus 401 -~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---------~~l~~L~~L~L~~n~l~~~~~~~~~ 470 (606)
T 3t6q_A 401 -QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF---------DGLPALQHLNLQGNHFPKGNIQKTN 470 (606)
T ss_dssp -TCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTT---------TTCTTCCEEECTTCBCGGGEECSSC
T ss_pred -cCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHH---------hCCCCCCEEECCCCCCCccccccch
Confidence 367777766543222212246778888888888888876654443 4578888888888876551 3
Q ss_pred cccCCCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccccccccC-CCccCCCcceEeecCCCC
Q 017525 246 WLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHS-KALPFPHLKEMSVDRCPL 324 (370)
Q Consensus 246 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~-~~~~~~~L~~L~l~~c~~ 324 (370)
.+..+++|+.|++++|.... + .+..+..+++|+.|+++++ .++.+.. ....++.| .|+++++ +
T Consensus 471 ~~~~l~~L~~L~Ls~n~l~~-~------------~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L-~L~L~~N-~ 534 (606)
T 3t6q_A 471 SLQTLGRLEILVLSFCDLSS-I------------DQHAFTSLKMMNHVDLSHN-RLTSSSIEALSHLKGI-YLNLASN-H 534 (606)
T ss_dssp GGGGCTTCCEEECTTSCCCE-E------------CTTTTTTCTTCCEEECCSS-CCCGGGGGGGTTCCSC-EEECCSS-C
T ss_pred hhccCCCccEEECCCCccCc-c------------ChhhhccccCCCEEECCCC-ccCcCChhHhCccccc-EEECcCC-c
Confidence 46678888888888886432 2 1246677888888888887 4544433 34456777 7887776 3
Q ss_pred CCCCC
Q 017525 325 LKKLP 329 (370)
Q Consensus 325 L~~l~ 329 (370)
++.++
T Consensus 535 l~~~~ 539 (606)
T 3t6q_A 535 ISIIL 539 (606)
T ss_dssp CCCCC
T ss_pred ccccC
Confidence 44443
No 28
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=6.6e-24 Score=191.53 Aligned_cols=79 Identities=19% Similarity=0.315 Sum_probs=52.7
Q ss_pred CCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccccCCcccEEeccCcccccccCcccccCCCCCcEEEc
Q 017525 38 MASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRM 115 (370)
Q Consensus 38 l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 115 (370)
..++++|+++++. .+|..++.+++|++|++++|.++.+|..++.+++|++|++++| .+..+|.. ++++++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~-l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPAS-IASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGG-GGGCTTCCEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHH-HhcCcCCCEEEC
Confidence 3566666666666 5666666677777777777766666666667777777777776 34456654 667777777777
Q ss_pred ccc
Q 017525 116 YEC 118 (370)
Q Consensus 116 ~~~ 118 (370)
++|
T Consensus 158 ~~n 160 (328)
T 4fcg_A 158 RAC 160 (328)
T ss_dssp EEE
T ss_pred CCC
Confidence 765
No 29
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.91 E-value=2.2e-24 Score=193.55 Aligned_cols=249 Identities=18% Similarity=0.189 Sum_probs=177.9
Q ss_pred CCCCEEecCCCcCCC---CChHHHhcCCCCcEEEccC-CC---cchhhhhccccCCEEeccCCccc-ccCcccccCCccc
Q 017525 15 PRLRTLFLSSNIFHR---VNSDFFQSMASLRVLKWSY-SN---PLLFEISKVVSLQHLDLSHSRIE-SLPIEFKCLVNLK 86 (370)
Q Consensus 15 ~~L~~L~l~~~~i~~---~~~~~~~~l~~L~~L~l~~-~~---~~~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~ 86 (370)
.+++.|+++++.++. +|.. +.++++|++|++++ +. .+|..++++++|++|++++|.++ .+|..++.+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChh-HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 689999999998884 6665 89999999999995 66 78889999999999999999997 7888899999999
Q ss_pred EEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCC-CccEEEEEecchhhhHhhhcC
Q 017525 87 CLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLE-HLSVFTITLNNFHAFQRLLGS 165 (370)
Q Consensus 87 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~L~~l~l~~~~~~~~~~~~~~ 165 (370)
+|++++|...+.+|.. +.++++|++|++++| .+.. ..+..+..++ +|+.++++.+.+....
T Consensus 129 ~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N-~l~~-----------~~p~~l~~l~~~L~~L~L~~N~l~~~~----- 190 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPS-ISSLPNLVGITFDGN-RISG-----------AIPDSYGSFSKLFTSMTISRNRLTGKI----- 190 (313)
T ss_dssp EEECCSSEEESCCCGG-GGGCTTCCEEECCSS-CCEE-----------ECCGGGGCCCTTCCEEECCSSEEEEEC-----
T ss_pred EEeCCCCccCCcCChH-HhcCCCCCeEECcCC-cccC-----------cCCHHHhhhhhcCcEEECcCCeeeccC-----
Confidence 9999999655577775 899999999999999 6651 2344566666 8888888877543110
Q ss_pred CCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccccc-c
Q 017525 166 CMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRH-A 244 (370)
Q Consensus 166 ~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~ 244 (370)
...+..++ |++|++++|.++......+ ..+++|++|++++|+++. +
T Consensus 191 -----------------------~~~~~~l~-L~~L~Ls~N~l~~~~~~~~---------~~l~~L~~L~L~~N~l~~~~ 237 (313)
T 1ogq_A 191 -----------------------PPTFANLN-LAFVDLSRNMLEGDASVLF---------GSDKNTQKIHLAKNSLAFDL 237 (313)
T ss_dssp -----------------------CGGGGGCC-CSEEECCSSEEEECCGGGC---------CTTSCCSEEECCSSEECCBG
T ss_pred -----------------------ChHHhCCc-ccEEECcCCcccCcCCHHH---------hcCCCCCEEECCCCceeeec
Confidence 01233444 7777777777665443332 456777777777776654 3
Q ss_pred CcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccccc-cccCCCccCCCcceEeecCCC
Q 017525 245 TWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLK-TVHSKALPFPHLKEMSVDRCP 323 (370)
Q Consensus 245 ~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~-~i~~~~~~~~~L~~L~l~~c~ 323 (370)
+.+..+++|++|++++|.....+ +..+..+++|+.|+++++. +. .++. ...+++|+.+++.+++
T Consensus 238 ~~~~~l~~L~~L~Ls~N~l~~~~-------------p~~l~~l~~L~~L~Ls~N~-l~~~ip~-~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 238 GKVGLSKNLNGLDLRNNRIYGTL-------------PQGLTQLKFLHSLNVSFNN-LCGEIPQ-GGNLQRFDVSAYANNK 302 (313)
T ss_dssp GGCCCCTTCCEEECCSSCCEECC-------------CGGGGGCTTCCEEECCSSE-EEEECCC-STTGGGSCGGGTCSSS
T ss_pred CcccccCCCCEEECcCCcccCcC-------------ChHHhcCcCCCEEECcCCc-ccccCCC-CccccccChHHhcCCC
Confidence 44556777777777777643222 2356667777777777763 43 3333 3556777777777766
Q ss_pred CCCCCCC
Q 017525 324 LLKKLPL 330 (370)
Q Consensus 324 ~L~~l~~ 330 (370)
.+...|.
T Consensus 303 ~lc~~p~ 309 (313)
T 1ogq_A 303 CLCGSPL 309 (313)
T ss_dssp EEESTTS
T ss_pred CccCCCC
Confidence 6655443
No 30
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.91 E-value=1.1e-22 Score=201.52 Aligned_cols=235 Identities=18% Similarity=0.186 Sum_probs=157.9
Q ss_pred CcccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCcccccCc-
Q 017525 2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESLPI- 77 (370)
Q Consensus 2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~lp~- 77 (370)
+++++.+|... .+++++|++++|.++.+++..+.++++|++|++++|. ..|..++++++|++|++++|.++.+|.
T Consensus 13 ~~~L~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~ 91 (680)
T 1ziw_A 13 HLKLTQVPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDK 91 (680)
T ss_dssp SSCCSSCCSCS-CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTT
T ss_pred CCCcccccccc-CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChh
Confidence 45678888752 3789999999999999988778999999999999998 557788999999999999999998887
Q ss_pred ccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchh
Q 017525 78 EFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFH 157 (370)
Q Consensus 78 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~ 157 (370)
.++.+++|++|++++| .+..++...++++++|++|++++| .+.. ..+..+..+++|+.|+++.+.+.
T Consensus 92 ~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~-----------~~~~~~~~l~~L~~L~L~~n~l~ 158 (680)
T 1ziw_A 92 TFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHN-GLSS-----------TKLGTQVQLENLQELLLSNNKIQ 158 (680)
T ss_dssp TTTTCTTCSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSS-CCSC-----------CCCCSSSCCTTCCEEECCSSCCC
T ss_pred hhccCCCCCEEECCCC-ccCccChhHccccCCCCEEECCCC-cccc-----------cCchhhcccccCCEEEccCCccc
Confidence 5889999999999998 556666555899999999999999 6653 22344667788888888877654
Q ss_pred hhHhh-hcCCCCCccccCcEEecCcCCCCcccccccccc---------------------------CCCcEEEEecCCcc
Q 017525 158 AFQRL-LGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASL---------------------------RHLQTLQLTYNDLD 209 (370)
Q Consensus 158 ~~~~~-~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l---------------------------~~L~~L~l~~~~l~ 209 (370)
..... ....... .|+.+++.++.-.... ...+..+ ++|+.|++++|.+.
T Consensus 159 ~~~~~~~~~~~~~--~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~ 235 (680)
T 1ziw_A 159 ALKSEELDIFANS--SLKKLELSSNQIKEFS-PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS 235 (680)
T ss_dssp CBCHHHHGGGTTC--EESEEECTTCCCCCBC-TTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCC
T ss_pred ccCHHHhhccccc--cccEEECCCCcccccC-hhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCccc
Confidence 43221 1111111 3666666554221111 1112111 44555566555555
Q ss_pred cceeccCCCcccccccccc--ccCcEEEEeccccccc--CcccCCCCccEEeeccCc
Q 017525 210 EIKIDNGGEVKRVLEISGF--HSLKNVYISRSKFRHA--TWLFLAPNLKRVEIDNCQ 262 (370)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~l~~~--~~l~~l~~L~~L~L~~~~ 262 (370)
......+ ..+ ++|++|++++|+++.+ ..++.+++|+.|++++|.
T Consensus 236 ~~~~~~~---------~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 283 (680)
T 1ziw_A 236 TTSNTTF---------LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283 (680)
T ss_dssp EECTTTT---------GGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCC
T ss_pred ccChhHh---------hccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCc
Confidence 4433222 122 3366666666655543 235556666666666664
No 31
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=1.8e-23 Score=209.56 Aligned_cols=235 Identities=23% Similarity=0.214 Sum_probs=138.8
Q ss_pred cccc-cccCC-CC-CCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhh-hhccccCCEEeccCCccc-c
Q 017525 3 NHIE-NLVES-PV-CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFE-ISKVVSLQHLDLSHSRIE-S 74 (370)
Q Consensus 3 n~l~-~l~~~-~~-l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~-~~~l~~L~~L~l~~~~l~-~ 74 (370)
|.++ .+|.. .. +++|+.|++++|.++...+..+..+++|++|++++|. .+|.. +..+++|++|++++|.++ .
T Consensus 279 n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~ 358 (768)
T 3rgz_A 279 NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 358 (768)
T ss_dssp SEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEEC
T ss_pred CccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCcc
Confidence 4444 45554 33 4777788887777763333336777777777777776 45544 677777777777777665 5
Q ss_pred cCcccccCC-cccEEeccCcccccccCcc-------------------------cccCCCCCcEEEccccCCCccccccc
Q 017525 75 LPIEFKCLV-NLKCLNLEYTYGISRIPPK-------------------------VISNLKILETLRMYECAALPQARDSI 128 (370)
Q Consensus 75 lp~~~~~l~-~L~~L~l~~~~~~~~~~~~-------------------------~~~~l~~L~~L~l~~~~~~~~~~~~~ 128 (370)
+|..+..++ +|+.|++++|...+.++.. .+.++++|++|++++| .+..
T Consensus 359 ~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~----- 432 (768)
T 3rgz_A 359 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN-YLSG----- 432 (768)
T ss_dssp CCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSS-EEES-----
T ss_pred ccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCC-cccC-----
Confidence 666555554 5555555555433333332 1444455555555544 3321
Q ss_pred ccCCcchhhhhcccCCCccEEEEEecchhh-hHh-hhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecC
Q 017525 129 LFGDCRVLVEELLGLEHLSVFTITLNNFHA-FQR-LLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYN 206 (370)
Q Consensus 129 ~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~-~~~-~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 206 (370)
..+..+..+++|+.+++..|.... ++. +.... .|+.+.+.++.-.... ...+..+++|++|++++|
T Consensus 433 ------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~-----~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~L~~N 500 (768)
T 3rgz_A 433 ------TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK-----TLETLILDFNDLTGEI-PSGLSNCTNLNWISLSNN 500 (768)
T ss_dssp ------CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT-----TCCEEECCSSCCCSCC-CGGGGGCTTCCEEECCSS
T ss_pred ------cccHHHhcCCCCCEEECCCCcccCcCCHHHcCCC-----CceEEEecCCcccCcC-CHHHhcCCCCCEEEccCC
Confidence 223445556666666666665442 211 22222 3566666655432221 235667778888888887
Q ss_pred CcccceeccCCCccccccccccccCcEEEEecccccc-c-CcccCCCCccEEeeccCcch
Q 017525 207 DLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRH-A-TWLFLAPNLKRVEIDNCQDM 264 (370)
Q Consensus 207 ~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~-~~l~~l~~L~~L~L~~~~~~ 264 (370)
.+......++ ..+++|++|++++|++++ + ..++.+++|+.|++++|...
T Consensus 501 ~l~~~~p~~~---------~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 501 RLTGEIPKWI---------GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp CCCSCCCGGG---------GGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred ccCCcCChHH---------hcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence 7764433322 567888888888887764 3 35777888888888888754
No 32
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.90 E-value=2.4e-23 Score=189.99 Aligned_cols=262 Identities=19% Similarity=0.194 Sum_probs=173.2
Q ss_pred CcccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCcccccCcc
Q 017525 2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESLPIE 78 (370)
Q Consensus 2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~lp~~ 78 (370)
++.++.+|.. -.++|+.|++++|.++.++...+.++++|++|++++|. ..+..+.++++|++|++++|.++.+|..
T Consensus 40 ~~~l~~iP~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 118 (353)
T 2z80_A 40 SGSLNSIPSG-LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSS 118 (353)
T ss_dssp STTCSSCCTT-CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHH
T ss_pred CCCccccccc-ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHh
Confidence 3456666664 23577777777777777766556777777777777776 3345577777777777777777776664
Q ss_pred -cccCCcccEEeccCcccccccCc-ccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecch
Q 017525 79 -FKCLVNLKCLNLEYTYGISRIPP-KVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNF 156 (370)
Q Consensus 79 -~~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~ 156 (370)
++.+++|++|++++| .+..++. ..+.++++|++|++++|..+..+ ....+..+++|+.++++.+..
T Consensus 119 ~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~-----------~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 119 WFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKI-----------QRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp HHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEE-----------CTTTTTTCCEEEEEEEEETTC
T ss_pred HhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCcccccc-----------CHHHccCCCCCCEEECCCCCc
Confidence 667777777777777 4555555 44677777777777776323321 133455666777777766543
Q ss_pred hhhHhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEE
Q 017525 157 HAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYI 236 (370)
Q Consensus 157 ~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l 236 (370)
... ....+..+++|++|++++|.++.++..+. ..+++|++|++
T Consensus 187 ~~~----------------------------~~~~l~~l~~L~~L~l~~n~l~~~~~~~~---------~~~~~L~~L~L 229 (353)
T 2z80_A 187 QSY----------------------------EPKSLKSIQNVSHLILHMKQHILLLEIFV---------DVTSSVECLEL 229 (353)
T ss_dssp CEE----------------------------CTTTTTTCSEEEEEEEECSCSTTHHHHHH---------HHTTTEEEEEE
T ss_pred Ccc----------------------------CHHHHhccccCCeecCCCCccccchhhhh---------hhcccccEEEC
Confidence 211 11246677889999999888877654332 45788999999
Q ss_pred ecccccccC-----cccCCCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccccccccCCC-cc
Q 017525 237 SRSKFRHAT-----WLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSKA-LP 310 (370)
Q Consensus 237 ~~~~l~~~~-----~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~~-~~ 310 (370)
++|++++.+ .......++.++++++........ .++..+..+++|+.|+++++ .++.++... ..
T Consensus 230 ~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~---------~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~ 299 (353)
T 2z80_A 230 RDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF---------QVMKLLNQISGLLELEFSRN-QLKSVPDGIFDR 299 (353)
T ss_dssp ESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHH---------HHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTT
T ss_pred CCCccccccccccccccccchhhccccccccccCcchh---------hhHHHHhcccCCCEEECCCC-CCCccCHHHHhc
Confidence 998776643 123466788888887764332211 02235677889999999988 677777664 56
Q ss_pred CCCcceEeecCCC
Q 017525 311 FPHLKEMSVDRCP 323 (370)
Q Consensus 311 ~~~L~~L~l~~c~ 323 (370)
+++|++|++.+++
T Consensus 300 l~~L~~L~L~~N~ 312 (353)
T 2z80_A 300 LTSLQKIWLHTNP 312 (353)
T ss_dssp CTTCCEEECCSSC
T ss_pred CCCCCEEEeeCCC
Confidence 8888888888774
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=3.9e-23 Score=194.65 Aligned_cols=246 Identities=16% Similarity=0.161 Sum_probs=161.8
Q ss_pred HhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccccCCcccEEeccCcccccccCcccccCCCCCcE
Q 017525 35 FQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILET 112 (370)
Q Consensus 35 ~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 112 (370)
++.+++|++|+++++. .+| .+..+++|++|++++|.++.+| ++.+++|++|++++| .+..++ ++++++|++
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N-~l~~~~---~~~l~~L~~ 110 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSN-KLTNLD---VTPLTKLTY 110 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSS-CCSCCC---CTTCTTCCE
T ss_pred hhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCC-CCceee---cCCCCcCCE
Confidence 7889999999999999 555 7899999999999999999886 889999999999999 455553 789999999
Q ss_pred EEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCCccccCcEEecCcCCCCccccccc
Q 017525 113 LRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSL 192 (370)
Q Consensus 113 L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l 192 (370)
|++++| .+..+ .+..+++|+.|+++.+.+..++ ...+. .|+.+.+.++...... .+
T Consensus 111 L~L~~N-~l~~l--------------~~~~l~~L~~L~l~~N~l~~l~----l~~l~--~L~~L~l~~n~~~~~~---~~ 166 (457)
T 3bz5_A 111 LNCDTN-KLTKL--------------DVSQNPLLTYLNCARNTLTEID----VSHNT--QLTELDCHLNKKITKL---DV 166 (457)
T ss_dssp EECCSS-CCSCC--------------CCTTCTTCCEEECTTSCCSCCC----CTTCT--TCCEEECTTCSCCCCC---CC
T ss_pred EECCCC-cCCee--------------cCCCCCcCCEEECCCCccceec----cccCC--cCCEEECCCCCccccc---cc
Confidence 999999 77622 2667788888888888766642 22222 3666777666544433 35
Q ss_pred cccCCCcEEEEecCCcccceeccCCC---------ccccccccccccCcEEEEecccccccCcccCCCCccEEeeccCcc
Q 017525 193 ASLRHLQTLQLTYNDLDEIKIDNGGE---------VKRVLEISGFHSLKNVYISRSKFRHATWLFLAPNLKRVEIDNCQD 263 (370)
Q Consensus 193 ~~l~~L~~L~l~~~~l~~~~~~~~~~---------~~~~~~~~~~~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~~ 263 (370)
..+++|+.|++++|.++.++...... ....++...+++|++|++++|++++++ ++.+++|+.|++++|..
T Consensus 167 ~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L~l~~N~l 245 (457)
T 3bz5_A 167 TPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNPL 245 (457)
T ss_dssp TTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCC
T ss_pred ccCCcCCEEECCCCccceeccccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccccC-ccccCCCCEEEeeCCcC
Confidence 56666777777776666553110000 000001144566666666666666655 55666667776666653
Q ss_pred hHHhhhccccCCCcccccCCccccc----------cccccccccccccccccCCCccCCCcceEeecCCCCCCCCCC
Q 017525 264 MKEIIDSEKFGEVPAEVMANLIPFA----------RLERLILEELKNLKTVHSKALPFPHLKEMSVDRCPLLKKLPL 330 (370)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~p----------~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~L~~l~~ 330 (370)
.. + ....++ +|+.|++++|..+..++. ..+++|+.|++++|+.++.+|.
T Consensus 246 ~~-~---------------~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~--~~l~~L~~L~Ls~n~~l~~l~~ 304 (457)
T 3bz5_A 246 TE-L---------------DVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA--EGCRKIKELDVTHNTQLYLLDC 304 (457)
T ss_dssp SC-C---------------CCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC--TTCTTCCCCCCTTCTTCCEEEC
T ss_pred CC-c---------------CHHHCCCCCEEeccCCCCCEEECCCCccCCcccc--cccccCCEEECCCCcccceecc
Confidence 22 1 112223 456666666655555542 3467777777777655444443
No 34
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.90 E-value=5e-23 Score=198.93 Aligned_cols=142 Identities=25% Similarity=0.283 Sum_probs=110.8
Q ss_pred CcccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCcccccCcc
Q 017525 2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESLPIE 78 (370)
Q Consensus 2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~lp~~ 78 (370)
++.++.+|.. -.++|++|++++|.++.+++..+.++++|++|++++|. ..|..+..+++|++|++++|.++.++..
T Consensus 14 ~~~l~~ip~~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 92 (549)
T 2z81_A 14 SRSFTSIPSG-LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSS 92 (549)
T ss_dssp TSCCSSCCSC-CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHH
T ss_pred CCcccccccc-CCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHH
Confidence 4678888885 34899999999999998876668999999999999998 4457899999999999999999988775
Q ss_pred -cccCCcccEEeccCccccc-ccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecch
Q 017525 79 -FKCLVNLKCLNLEYTYGIS-RIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNF 156 (370)
Q Consensus 79 -~~~l~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~ 156 (370)
++.+++|++|++++|.... ..+. .++++++|++|++++|..++.++ ...+..+++|+.|+++.+..
T Consensus 93 ~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~-----------~~~~~~l~~L~~L~L~~n~l 160 (549)
T 2z81_A 93 WFGPLSSLKYLNLMGNPYQTLGVTS-LFPNLTNLQTLRIGNVETFSEIR-----------RIDFAGLTSLNELEIKALSL 160 (549)
T ss_dssp HHTTCTTCCEEECTTCCCSSSCSSC-SCTTCTTCCEEEEEESSSCCEEC-----------TTTTTTCCEEEEEEEEETTC
T ss_pred HhccCCCCcEEECCCCcccccchhh-hhhccCCccEEECCCCccccccC-----------HhhhhcccccCeeeccCCcc
Confidence 8999999999999994433 2344 38999999999999993355433 12344455555555555443
No 35
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.90 E-value=1.1e-22 Score=201.65 Aligned_cols=240 Identities=18% Similarity=0.198 Sum_probs=164.2
Q ss_pred CcccccccCC--CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchh-hhhccccCCEEeccCCcccccC
Q 017525 2 TNHIENLVES--PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLF-EISKVVSLQHLDLSHSRIESLP 76 (370)
Q Consensus 2 ~n~l~~l~~~--~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~-~~~~l~~L~~L~l~~~~l~~lp 76 (370)
+|.++.++.. .++++|++|++++|.++.+++..+.++++|++|++++|. .+|. .++++++|++|++++|.++.++
T Consensus 34 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~ 113 (680)
T 1ziw_A 34 HNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK 113 (680)
T ss_dssp SSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred CCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccC
Confidence 5778888874 789999999999999998877779999999999999998 6665 5899999999999999998877
Q ss_pred c-ccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecc
Q 017525 77 I-EFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNN 155 (370)
Q Consensus 77 ~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~ 155 (370)
. .++.+++|++|++++|.. ...+...++++++|++|++++| .+..++ ...-....+++|+.++++.+.
T Consensus 114 ~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n-~l~~~~---------~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 114 NNPFVKQKNLITLDLSHNGL-SSTKLGTQVQLENLQELLLSNN-KIQALK---------SEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp SCTTTTCTTCCEEECCSSCC-SCCCCCSSSCCTTCCEEECCSS-CCCCBC---------HHHHGGGTTCEESEEECTTCC
T ss_pred hhHccccCCCCEEECCCCcc-cccCchhhcccccCCEEEccCC-cccccC---------HHHhhccccccccEEECCCCc
Confidence 4 689999999999999954 4444444889999999999999 665432 111111233566666666554
Q ss_pred hhhhHh--hhcCCCCCc----------------------cccCcEEecCcCCCCccccccccccC--CCcEEEEecCCcc
Q 017525 156 FHAFQR--LLGSCMPQY----------------------VSTPSLCLSHFNNSKSLGVFSLASLR--HLQTLQLTYNDLD 209 (370)
Q Consensus 156 ~~~~~~--~~~~~~~~~----------------------l~L~~l~l~~~~~~~~~~~~~l~~l~--~L~~L~l~~~~l~ 209 (370)
...+.. +.....+.. -.++.+.+.++.-.. .....+..++ +|+.|++++|.++
T Consensus 183 l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~-~~~~~~~~l~~~~L~~L~Ls~n~l~ 261 (680)
T 1ziw_A 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST-TSNTTFLGLKWTNLTMLDLSYNNLN 261 (680)
T ss_dssp CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCE-ECTTTTGGGGGSCCCEEECTTSCCC
T ss_pred ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccc-cChhHhhccCcCCCCEEECCCCCcC
Confidence 332211 111110000 035566665543221 1122344443 4888888888777
Q ss_pred cceeccCCCccccccccccccCcEEEEeccccccc--CcccCCCCccEEeeccCc
Q 017525 210 EIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHA--TWLFLAPNLKRVEIDNCQ 262 (370)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~l~~l~~L~~L~L~~~~ 262 (370)
.++...+ ..+++|++|++++|+++.+ ..+..+++|+.|+++++.
T Consensus 262 ~~~~~~~---------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~ 307 (680)
T 1ziw_A 262 VVGNDSF---------AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSF 307 (680)
T ss_dssp EECTTTT---------TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCB
T ss_pred ccCcccc---------cCcccccEeeCCCCccCccChhhhcCCCCccEEeccchh
Confidence 6654433 4577788888887766554 246667777777776553
No 36
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=5.4e-23 Score=185.55 Aligned_cols=237 Identities=19% Similarity=0.239 Sum_probs=152.1
Q ss_pred cccCCEEeccCCcccccCcccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhh
Q 017525 59 VVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVE 138 (370)
Q Consensus 59 l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 138 (370)
..++++|++++++++.+|..++.+++|++|++++| .+..+|.. ++++++|++|++++| .+.. .+.
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n-~l~~lp~~-~~~l~~L~~L~Ls~n-~l~~------------lp~ 144 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAA-GLMELPDT-MQQFAGLETLTLARN-PLRA------------LPA 144 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESS-CCCCCCSC-GGGGTTCSEEEEESC-CCCC------------CCG
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCC-CccchhHH-HhccCCCCEEECCCC-cccc------------CcH
Confidence 36777777777777777777777777777777777 34466664 777777777777777 5553 233
Q ss_pred hcccCCCccEEEEEecchhhhHhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCC
Q 017525 139 ELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGE 218 (370)
Q Consensus 139 ~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~ 218 (370)
.+..+++|+.|++++|..... ... .+....+ ...+..+++|++|++++|.++.++..+
T Consensus 145 ~l~~l~~L~~L~L~~n~~~~~--------~p~-~~~~~~~----------~~~~~~l~~L~~L~L~~n~l~~lp~~l--- 202 (328)
T 4fcg_A 145 SIASLNRLRELSIRACPELTE--------LPE-PLASTDA----------SGEHQGLVNLQSLRLEWTGIRSLPASI--- 202 (328)
T ss_dssp GGGGCTTCCEEEEEEETTCCC--------CCS-CSEEEC-----------CCCEEESTTCCEEEEEEECCCCCCGGG---
T ss_pred HHhcCcCCCEEECCCCCCccc--------cCh-hHhhccc----------hhhhccCCCCCEEECcCCCcCcchHhh---
Confidence 466667777777776542110 000 0111000 013555777788888777777655433
Q ss_pred ccccccccccccCcEEEEecccccccC-cccCCCCccEEeeccCcchHHhhhccccCCCcccccCCcccccccccccccc
Q 017525 219 VKRVLEISGFHSLKNVYISRSKFRHAT-WLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEE 297 (370)
Q Consensus 219 ~~~~~~~~~~~~L~~L~l~~~~l~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~ 297 (370)
..+++|++|++++|+++.++ .++.+++|+.|++++|.....+ +..+..+++|+.|++++
T Consensus 203 -------~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~-------------p~~~~~l~~L~~L~L~~ 262 (328)
T 4fcg_A 203 -------ANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNY-------------PPIFGGRAPLKRLILKD 262 (328)
T ss_dssp -------GGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBC-------------CCCTTCCCCCCEEECTT
T ss_pred -------cCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhh-------------HHHhcCCCCCCEEECCC
Confidence 56777888888877776653 4666777888888777654433 23566777888888887
Q ss_pred ccccccccCCCccCCCcceEeecCCCCCCCCCCCCCCCCcceeEEechHhhhhhcc
Q 017525 298 LKNLKTVHSKALPFPHLKEMSVDRCPLLKKLPLDCNRGLERKIVIKGQRRWWNELQ 353 (370)
Q Consensus 298 ~~~l~~i~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (370)
|...+.++.....+++|+.|++++|+.++.+|.....++ .+..+....+....+.
T Consensus 263 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~-~L~~l~l~~~~~~~l~ 317 (328)
T 4fcg_A 263 CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP-ANCIILVPPHLQAQLD 317 (328)
T ss_dssp CTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSC-TTCEEECCGGGSCC--
T ss_pred CCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhcc-CceEEeCCHHHHHHHh
Confidence 766677766666777888888888877777777666653 4555555555554444
No 37
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.90 E-value=4.3e-23 Score=184.57 Aligned_cols=211 Identities=18% Similarity=0.194 Sum_probs=148.4
Q ss_pred CcccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--c---chhhhhccccCCEEeccCCcccccC
Q 017525 2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--P---LLFEISKVVSLQHLDLSHSRIESLP 76 (370)
Q Consensus 2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~---~~~~~~~l~~L~~L~l~~~~l~~lp 76 (370)
++.++.+|.. -.++|+.|++++|.++.++..++.++++|++|++++|. . .+..+..+++|++|++++|.++.+|
T Consensus 16 ~~~l~~ip~~-~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~ 94 (306)
T 2z66_A 16 SKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS 94 (306)
T ss_dssp SSCCSSCCSC-CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEE
T ss_pred CCCcccCCCC-CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccCh
Confidence 3557777774 34799999999999999998878999999999999998 2 2567778999999999999999899
Q ss_pred cccccCCcccEEeccCcccccccCc-ccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecc
Q 017525 77 IEFKCLVNLKCLNLEYTYGISRIPP-KVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNN 155 (370)
Q Consensus 77 ~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~ 155 (370)
..+..+++|++|++++| .+..++. ..+.++++|++|++++| .+.. .....+..+++|+.|+++++.
T Consensus 95 ~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~-----------~~~~~~~~l~~L~~L~l~~n~ 161 (306)
T 2z66_A 95 SNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHT-HTRV-----------AFNGIFNGLSSLEVLKMAGNS 161 (306)
T ss_dssp EEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTS-CCEE-----------CSTTTTTTCTTCCEEECTTCE
T ss_pred hhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCC-cCCc-----------cchhhcccCcCCCEEECCCCc
Confidence 88999999999999998 4555543 44889999999999999 6652 223456677888888887765
Q ss_pred hhhhHhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEE
Q 017525 156 FHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVY 235 (370)
Q Consensus 156 ~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~ 235 (370)
...... ...+..+++|++|++++|.++.++...+ ..+++|++|+
T Consensus 162 l~~~~~---------------------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---------~~l~~L~~L~ 205 (306)
T 2z66_A 162 FQENFL---------------------------PDIFTELRNLTFLDLSQCQLEQLSPTAF---------NSLSSLQVLN 205 (306)
T ss_dssp EGGGEE---------------------------CSCCTTCTTCCEEECTTSCCCEECTTTT---------TTCTTCCEEE
T ss_pred cccccc---------------------------hhHHhhCcCCCEEECCCCCcCCcCHHHh---------cCCCCCCEEE
Confidence 432000 0124445556666666665555433222 3455566666
Q ss_pred EecccccccC--cccCCCCccEEeeccCc
Q 017525 236 ISRSKFRHAT--WLFLAPNLKRVEIDNCQ 262 (370)
Q Consensus 236 l~~~~l~~~~--~l~~l~~L~~L~L~~~~ 262 (370)
+++|+++.++ .+..+++|+.|++++|.
T Consensus 206 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp CTTSCCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred CCCCccCccChhhccCcccCCEeECCCCC
Confidence 6666555443 24455556666665554
No 38
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=5.6e-23 Score=206.04 Aligned_cols=300 Identities=19% Similarity=0.182 Sum_probs=174.7
Q ss_pred CCCCCCCEEecCCCcCC-CCChHHHhcCCCCcEEEccCCC---cchhhhhcc---------------------------c
Q 017525 12 PVCPRLRTLFLSSNIFH-RVNSDFFQSMASLRVLKWSYSN---PLLFEISKV---------------------------V 60 (370)
Q Consensus 12 ~~l~~L~~L~l~~~~i~-~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l---------------------------~ 60 (370)
..+++|+.|++++|.+. .+|...+..+++|++|++++|. .+|..+..+ +
T Consensus 315 ~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 394 (768)
T 3rgz_A 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 394 (768)
T ss_dssp GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTC
T ss_pred hcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccC
Confidence 55666666666666555 5555545666666666666665 344444333 3
Q ss_pred cCCEEeccCCccc-ccCcccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCc-ccccccc---------
Q 017525 61 SLQHLDLSHSRIE-SLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALP-QARDSIL--------- 129 (370)
Q Consensus 61 ~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~--------- 129 (370)
+|++|++++|.++ .+|..++.+++|+.|++++|...+.+|.. ++++++|++|++++| .+. .++..+.
T Consensus 395 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLN-MLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGG-GGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEE
T ss_pred CccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHH-HhcCCCCCEEECCCC-cccCcCCHHHcCCCCceEEE
Confidence 4444444444443 45556667777777777777544455554 777777777777777 443 2221100
Q ss_pred ---cCCcchhhhhcccCCCccEEEEEecchhh-hHh-hhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEe
Q 017525 130 ---FGDCRVLVEELLGLEHLSVFTITLNNFHA-FQR-LLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLT 204 (370)
Q Consensus 130 ---~~~~~~~~~~l~~l~~L~~l~l~~~~~~~-~~~-~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 204 (370)
.......+..+..+++|+.|+++.|.... ++. +.... .|+.+.+.++.-.... ...+..+++|+.|+++
T Consensus 473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~-----~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~Ls 546 (768)
T 3rgz_A 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE-----NLAILKLSNNSFSGNI-PAELGDCRSLIWLDLN 546 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT-----TCCEEECCSSCCEEEC-CGGGGGCTTCCEEECC
T ss_pred ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCC-----CCCEEECCCCcccCcC-CHHHcCCCCCCEEECC
Confidence 00111233445566666666666665542 222 22222 2555666555432111 2356677778888887
Q ss_pred cCCcc-cceeccCCCc--------------------------------------c--------------------ccc--
Q 017525 205 YNDLD-EIKIDNGGEV--------------------------------------K--------------------RVL-- 223 (370)
Q Consensus 205 ~~~l~-~~~~~~~~~~--------------------------------------~--------------------~~~-- 223 (370)
+|.+. .++..++... + ...
T Consensus 547 ~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~ 626 (768)
T 3rgz_A 547 TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP 626 (768)
T ss_dssp SSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCC
T ss_pred CCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCch
Confidence 77665 2222211000 0 000
Q ss_pred cccccccCcEEEEecccccc-c-CcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCcccccccccccccccccc
Q 017525 224 EISGFHSLKNVYISRSKFRH-A-TWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNL 301 (370)
Q Consensus 224 ~~~~~~~L~~L~l~~~~l~~-~-~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l 301 (370)
....+++|++|++++|++++ + ..++.+++|+.|+|++|.....+ |..++.+++|+.|+++++.--
T Consensus 627 ~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i-------------p~~l~~L~~L~~LdLs~N~l~ 693 (768)
T 3rgz_A 627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI-------------PDEVGDLRGLNILDLSSNKLD 693 (768)
T ss_dssp SCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCC-------------CGGGGGCTTCCEEECCSSCCE
T ss_pred hhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCC-------------ChHHhCCCCCCEEECCCCccc
Confidence 01335678888888887765 3 35778888888888888754333 357788899999999988444
Q ss_pred ccccCCCccCCCcceEeecCCCCCCCCCCCC
Q 017525 302 KTVHSKALPFPHLKEMSVDRCPLLKKLPLDC 332 (370)
Q Consensus 302 ~~i~~~~~~~~~L~~L~l~~c~~L~~l~~~~ 332 (370)
..++.....++.|+.|++++++--..+|.+.
T Consensus 694 g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~ 724 (768)
T 3rgz_A 694 GRIPQAMSALTMLTEIDLSNNNLSGPIPEMG 724 (768)
T ss_dssp ECCCGGGGGCCCCSEEECCSSEEEEECCSSS
T ss_pred CcCChHHhCCCCCCEEECcCCcccccCCCch
Confidence 4666666778899999998875444577653
No 39
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.89 E-value=1.2e-22 Score=197.23 Aligned_cols=310 Identities=19% Similarity=0.179 Sum_probs=199.1
Q ss_pred CcccccccCC--CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchh-hhhccccCCEEeccCCcccc--
Q 017525 2 TNHIENLVES--PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLF-EISKVVSLQHLDLSHSRIES-- 74 (370)
Q Consensus 2 ~n~l~~l~~~--~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~-~~~~l~~L~~L~l~~~~l~~-- 74 (370)
+|.++.+++. .++++|++|++++|.++.+++..+.++++|++|++++|. .++. .++++++|++|++++|.++.
T Consensus 61 ~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~ 140 (570)
T 2z63_A 61 RCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140 (570)
T ss_dssp TCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCC
T ss_pred CCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceec
Confidence 4567777654 678888888888888877776667888888888888877 3433 47777888888888887764
Q ss_pred cCcccccCCcccEEeccCcccccccCcccccCC-----------------------------------------------
Q 017525 75 LPIEFKCLVNLKCLNLEYTYGISRIPPKVISNL----------------------------------------------- 107 (370)
Q Consensus 75 lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l----------------------------------------------- 107 (370)
+|..++.+++|++|++++|. +..++...++.+
T Consensus 141 lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 219 (570)
T 2z63_A 141 LPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKT 219 (570)
T ss_dssp CCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHH
T ss_pred ChhhhcccCCCCEEeCcCCc-cceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhh
Confidence 57777778888888877763 222222112222
Q ss_pred --------------------------------------------------------------CCCcEEEccccCCCcccc
Q 017525 108 --------------------------------------------------------------KILETLRMYECAALPQAR 125 (370)
Q Consensus 108 --------------------------------------------------------------~~L~~L~l~~~~~~~~~~ 125 (370)
++|+.|++.+| .+..++
T Consensus 220 ~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~l~ 298 (570)
T 2z63_A 220 CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV-TIERVK 298 (570)
T ss_dssp HHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESC-EECSCC
T ss_pred hhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCc-cchhhh
Confidence 33333333333 222111
Q ss_pred ccccc--------------CCcch----------------hhhhcccCCCccEEEEEecchhhh----HhhhcCCCCCcc
Q 017525 126 DSILF--------------GDCRV----------------LVEELLGLEHLSVFTITLNNFHAF----QRLLGSCMPQYV 171 (370)
Q Consensus 126 ~~~~~--------------~~~~~----------------~~~~l~~l~~L~~l~l~~~~~~~~----~~~~~~~~~~~l 171 (370)
..+.. ..... .......+++|+.++++.+..... ..+....
T Consensus 299 ~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~----- 373 (570)
T 2z63_A 299 DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT----- 373 (570)
T ss_dssp BCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCS-----
T ss_pred hhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccC-----
Confidence 10000 00000 000014678999999998876543 2233333
Q ss_pred ccCcEEecCcCCCCccccccccccCCCcEEEEecCCccccee-ccCCCccccccccccccCcEEEEeccccccc--Cccc
Q 017525 172 STPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKI-DNGGEVKRVLEISGFHSLKNVYISRSKFRHA--TWLF 248 (370)
Q Consensus 172 ~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~l~ 248 (370)
+|+.+.+.++.-.... ..+..+++|++|++++|.+..... ..+ ..+++|++|++++|+++.. ..+.
T Consensus 374 ~L~~L~l~~n~l~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~---------~~l~~L~~L~l~~n~l~~~~~~~~~ 442 (570)
T 2z63_A 374 SLKYLDLSFNGVITMS--SNFLGLEQLEHLDFQHSNLKQMSEFSVF---------LSLRNLIYLDISHTHTRVAFNGIFN 442 (570)
T ss_dssp CCCEEECCSCSEEEEE--EEEETCTTCCEEECTTSEEESCTTSCTT---------TTCTTCCEEECTTSCCEECCTTTTT
T ss_pred ccCEEECCCCcccccc--ccccccCCCCEEEccCCccccccchhhh---------hcCCCCCEEeCcCCcccccchhhhh
Confidence 3777887776433222 237788999999999988876643 122 5789999999999977664 3577
Q ss_pred CCCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccccccc-cCCCccCCCcceEeecCCCCCCC
Q 017525 249 LAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTV-HSKALPFPHLKEMSVDRCPLLKK 327 (370)
Q Consensus 249 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i-~~~~~~~~~L~~L~l~~c~~L~~ 327 (370)
.+++|+.|++++|...... .+..+..+++|+.|++++| .++.+ +.....+++|+.|++++| +++.
T Consensus 443 ~l~~L~~L~l~~n~l~~~~------------~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~ 508 (570)
T 2z63_A 443 GLSSLEVLKMAGNSFQENF------------LPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASN-QLKS 508 (570)
T ss_dssp TCTTCCEEECTTCEEGGGE------------ECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSC
T ss_pred cCCcCcEEECcCCcCcccc------------chhhhhcccCCCEEECCCC-ccccCChhhhhcccCCCEEeCCCC-cCCC
Confidence 8999999999999854322 3357788999999999998 56666 334557899999999887 5777
Q ss_pred CCCCCCCCCcceeEEe
Q 017525 328 LPLDCNRGLERKIVIK 343 (370)
Q Consensus 328 l~~~~~~~~~~~~~~~ 343 (370)
+|.+....-..+..+.
T Consensus 509 ~~~~~~~~l~~L~~L~ 524 (570)
T 2z63_A 509 VPDGIFDRLTSLQKIW 524 (570)
T ss_dssp CCTTTTTTCTTCCEEE
T ss_pred CCHHHhhcccCCcEEE
Confidence 6654322224455544
No 40
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.89 E-value=2.1e-22 Score=203.89 Aligned_cols=142 Identities=22% Similarity=0.235 Sum_probs=102.6
Q ss_pred CcccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cc-hhhhhccccCCEEeccCCccccc-C
Q 017525 2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PL-LFEISKVVSLQHLDLSHSRIESL-P 76 (370)
Q Consensus 2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~-~~~~~~l~~L~~L~l~~~~l~~l-p 76 (370)
+++++.+|. -.++|++|++++|.++.+++..+.++++|++|++++|. .+ |..+.++++|++|++++|.++.+ |
T Consensus 13 ~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p 90 (844)
T 3j0a_A 13 FCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP 90 (844)
T ss_dssp CCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT
T ss_pred CCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH
Confidence 456777777 56788888888888887655557888888888888885 33 67788888888888888888755 6
Q ss_pred cccccCCcccEEeccCcccccccC-cccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecc
Q 017525 77 IEFKCLVNLKCLNLEYTYGISRIP-PKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNN 155 (370)
Q Consensus 77 ~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~ 155 (370)
..++.+++|++|++++|...+..+ ...++++++|++|++++| .+.... ....+..+++|+.|+++.+.
T Consensus 91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~----------~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLY----------LHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCC----------CCGGGGTCSSCCEEEEESSC
T ss_pred hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCC-cccccc----------cchhHhhCCCCCEEECCCCc
Confidence 678888888888888885444333 234778888888888888 554221 12346677777777777765
Q ss_pred h
Q 017525 156 F 156 (370)
Q Consensus 156 ~ 156 (370)
+
T Consensus 160 i 160 (844)
T 3j0a_A 160 I 160 (844)
T ss_dssp C
T ss_pred C
Confidence 4
No 41
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.89 E-value=3.5e-22 Score=202.27 Aligned_cols=293 Identities=16% Similarity=0.151 Sum_probs=213.0
Q ss_pred CcccccccCC--CCCCCCCEEecCCC-cCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCcccc-
Q 017525 2 TNHIENLVES--PVCPRLRTLFLSSN-IFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIES- 74 (370)
Q Consensus 2 ~n~l~~l~~~--~~l~~L~~L~l~~~-~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~- 74 (370)
+|.|+.+++. .++++|++|++++| .+..+++..+.++++|++|++++|. ..|..++++++|++|++++|.++.
T Consensus 33 ~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ 112 (844)
T 3j0a_A 33 FNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDA 112 (844)
T ss_dssp SCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSC
T ss_pred CCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcc
Confidence 5778887654 89999999999999 5557766668999999999999998 558899999999999999999974
Q ss_pred cCcc--cccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccC--CCccEEE
Q 017525 75 LPIE--FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGL--EHLSVFT 150 (370)
Q Consensus 75 lp~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l--~~L~~l~ 150 (370)
+|.. ++.+++|++|++++|...+..+...++++++|++|++++| .+... ....+..+ ++|+.++
T Consensus 113 ~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N-~i~~~-----------~~~~l~~l~~~~L~~L~ 180 (844)
T 3j0a_A 113 VLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN-QIFLV-----------CEHELEPLQGKTLSFFS 180 (844)
T ss_dssp CSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS-CCCCC-----------CSGGGHHHHHCSSCCCE
T ss_pred cccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC-cCCee-----------CHHHcccccCCccceEE
Confidence 5554 8899999999999995544434345899999999999999 66532 22334444 7899999
Q ss_pred EEecchhhhHh--hhcCC-CCCccccCcEEecCcCCCCcc--cccc-c--------------------------------
Q 017525 151 ITLNNFHAFQR--LLGSC-MPQYVSTPSLCLSHFNNSKSL--GVFS-L-------------------------------- 192 (370)
Q Consensus 151 l~~~~~~~~~~--~~~~~-~~~~l~L~~l~l~~~~~~~~~--~~~~-l-------------------------------- 192 (370)
++.+....... +.... .+..+.++.+++.++.-.... .+.. +
T Consensus 181 L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f 260 (844)
T 3j0a_A 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF 260 (844)
T ss_dssp ECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTT
T ss_pred CCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhh
Confidence 99887644211 11111 112224778888766322111 1110 0
Q ss_pred cc--cCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEeccccccc--CcccCCCCccEEeeccCcchHHhh
Q 017525 193 AS--LRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHA--TWLFLAPNLKRVEIDNCQDMKEII 268 (370)
Q Consensus 193 ~~--l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~l~~l~~L~~L~L~~~~~~~~~~ 268 (370)
.. .++|+.|++++|.+..+....+ ..+++|++|++++|+++.+ ..+..+++|+.|+|++|.. +.+
T Consensus 261 ~~l~~~~L~~L~Ls~n~l~~~~~~~~---------~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l-~~~- 329 (844)
T 3j0a_A 261 AGLARSSVRHLDLSHGFVFSLNSRVF---------ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL-GEL- 329 (844)
T ss_dssp TTTTTSCCCEEECTTCCCCEECSCCS---------SSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCC-SCC-
T ss_pred hccccCCccEEECCCCcccccChhhh---------hcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCC-Ccc-
Confidence 00 2578888888888877654443 5689999999999988775 3577899999999999874 222
Q ss_pred hccccCCCcccccCCccccccccccccccccccccccCC-CccCCCcceEeecCCCCCCCCCC
Q 017525 269 DSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSK-ALPFPHLKEMSVDRCPLLKKLPL 330 (370)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~-~~~~~~L~~L~l~~c~~L~~l~~ 330 (370)
.+..+..+++|+.|+++++ .+..+... ...+++|+.|+++++ .++.++.
T Consensus 330 -----------~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~ 379 (844)
T 3j0a_A 330 -----------YSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDN-ALTTIHF 379 (844)
T ss_dssp -----------CSCSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETC-CSCCCSS
T ss_pred -----------CHHHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCC-CCCcccC
Confidence 2347788999999999998 57776654 346899999999987 4565554
No 42
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.89 E-value=1.9e-23 Score=187.82 Aligned_cols=267 Identities=15% Similarity=0.121 Sum_probs=193.9
Q ss_pred CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccccCCcccEEe
Q 017525 12 PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLN 89 (370)
Q Consensus 12 ~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~ 89 (370)
..+++|+.|++++|.++.+++..+..+++|++|++++|. ..+. +..+++|++|++++|.++.++. .++|++|+
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~ 105 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLH 105 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEE----CTTCCEEE
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccC----CCCcCEEE
Confidence 457799999999999999988779999999999999998 3443 8899999999999999887663 48999999
Q ss_pred ccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCC
Q 017525 90 LEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQ 169 (370)
Q Consensus 90 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~ 169 (370)
+++| .+..++. ..+++|++|++++| .+..+ ....+..+++|+.|+++.|.+...........+.
T Consensus 106 l~~n-~l~~~~~---~~~~~L~~L~l~~N-~l~~~-----------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~ 169 (317)
T 3o53_A 106 AANN-NISRVSC---SRGQGKKNIYLANN-KITML-----------RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169 (317)
T ss_dssp CCSS-CCSEEEE---CCCSSCEEEECCSS-CCCSG-----------GGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTT
T ss_pred CCCC-ccCCcCc---cccCCCCEEECCCC-CCCCc-----------cchhhhccCCCCEEECCCCCCCcccHHHHhhccC
Confidence 9998 4554443 34788999999999 77632 2345667889999999988776543211111111
Q ss_pred ccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccccccC-ccc
Q 017525 170 YVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHAT-WLF 248 (370)
Q Consensus 170 ~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~l~ 248 (370)
.|+.+.+.++.-... .....+++|++|++++|.++.++..+ ..+++|++|++++|+++.++ .+.
T Consensus 170 --~L~~L~L~~N~l~~~---~~~~~l~~L~~L~Ls~N~l~~l~~~~----------~~l~~L~~L~L~~N~l~~l~~~~~ 234 (317)
T 3o53_A 170 --TLEHLNLQYNFIYDV---KGQVVFAKLKTLDLSSNKLAFMGPEF----------QSAAGVTWISLRNNKLVLIEKALR 234 (317)
T ss_dssp --TCCEEECTTSCCCEE---ECCCCCTTCCEEECCSSCCCEECGGG----------GGGTTCSEEECTTSCCCEECTTCC
T ss_pred --cCCEEECCCCcCccc---ccccccccCCEEECCCCcCCcchhhh----------cccCcccEEECcCCcccchhhHhh
Confidence 377777776653322 23445789999999999998876554 56889999999999887764 466
Q ss_pred CCCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccccccccCCCccCCCcceEeecCCCCCC
Q 017525 249 LAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSKALPFPHLKEMSVDRCPLLK 326 (370)
Q Consensus 249 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~L~ 326 (370)
.+++|+.|++++|....+.. +..+..+++|+.|++.++..++.........+.+....-..|..+.
T Consensus 235 ~l~~L~~L~l~~N~~~~~~~------------~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~cc~~l~ 300 (317)
T 3o53_A 235 FSQNLEHFDLRGNGFHCGTL------------RDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLP 300 (317)
T ss_dssp CCTTCCEEECTTCCCBHHHH------------HHHHHTCHHHHHHHHHHHHHHHSSSSCCCSSTTCEEETTEEEBCCT
T ss_pred cCCCCCEEEccCCCccCcCH------------HHHHhccccceEEECCCchhccCCchhccCCCceecccceeeccCC
Confidence 78899999999988663322 2366788999999998887776654444444444443334454443
No 43
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.89 E-value=1.9e-22 Score=193.57 Aligned_cols=305 Identities=20% Similarity=0.195 Sum_probs=206.7
Q ss_pred CcccccccCC--CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccc--c
Q 017525 2 TNHIENLVES--PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIES--L 75 (370)
Q Consensus 2 ~n~l~~l~~~--~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~--l 75 (370)
+|.++.+++. ..+++|++|++++|.++.+++..+.++++|++|++++|. .+|.. .+++|++|++++|.++. +
T Consensus 30 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~ 107 (520)
T 2z7x_B 30 QNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPI 107 (520)
T ss_dssp SSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCC
T ss_pred CCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEeccCCccccccc
Confidence 5778888753 889999999999999998876668999999999999999 67765 89999999999999975 5
Q ss_pred CcccccCCcccEEeccCcccccccCcccccCCCCC--cEEEccccCCC--c-ccccccccC-------------------
Q 017525 76 PIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKIL--ETLRMYECAAL--P-QARDSILFG------------------- 131 (370)
Q Consensus 76 p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~~--~-~~~~~~~~~------------------- 131 (370)
|..++.+++|++|++++|.. .. ..+..+++| ++|++.+| .+ . ..+..+..-
T Consensus 108 p~~~~~l~~L~~L~L~~n~l-~~---~~~~~l~~L~L~~L~l~~n-~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~ 182 (520)
T 2z7x_B 108 CKEFGNMSQLKFLGLSTTHL-EK---SSVLPIAHLNISKVLLVLG-ETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFIL 182 (520)
T ss_dssp CGGGGGCTTCCEEEEEESSC-CG---GGGGGGTTSCEEEEEEEEC-TTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCC
T ss_pred hhhhccCCcceEEEecCccc-ch---hhccccccceeeEEEeecc-cccccccccccccccccceEEEEeccCcchhhhh
Confidence 67899999999999999843 32 225566666 77777776 43 1 111000000
Q ss_pred --------------Cc-----------chhhhhcc---------------------------cCCCccEEEEEecchh--
Q 017525 132 --------------DC-----------RVLVEELL---------------------------GLEHLSVFTITLNNFH-- 157 (370)
Q Consensus 132 --------------~~-----------~~~~~~l~---------------------------~l~~L~~l~l~~~~~~-- 157 (370)
.. ...+..+. ..++|+.++++.+...
T Consensus 183 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 262 (520)
T 2z7x_B 183 DVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQ 262 (520)
T ss_dssp CCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESC
T ss_pred hhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCc
Confidence 00 00000000 0124444444443322
Q ss_pred --------------------------hhH-----hhhcC-------------------CCCCccccCcEEecCcCCCCcc
Q 017525 158 --------------------------AFQ-----RLLGS-------------------CMPQYVSTPSLCLSHFNNSKSL 187 (370)
Q Consensus 158 --------------------------~~~-----~~~~~-------------------~~~~~l~L~~l~l~~~~~~~~~ 187 (370)
.++ ..... ..+. .++.+++.++.-.. .
T Consensus 263 ~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~--~L~~L~Ls~n~l~~-~ 339 (520)
T 2z7x_B 263 LDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKIS--PFLHLDFSNNLLTD-T 339 (520)
T ss_dssp CCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCC--CCCEEECCSSCCCT-T
T ss_pred cccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCC--cccEEEeECCccCh-h
Confidence 111 11000 1222 37778887765333 2
Q ss_pred ccccccccCCCcEEEEecCCccccee--ccCCCccccccccccccCcEEEEecccccc-cC--cccCCCCccEEeeccCc
Q 017525 188 GVFSLASLRHLQTLQLTYNDLDEIKI--DNGGEVKRVLEISGFHSLKNVYISRSKFRH-AT--WLFLAPNLKRVEIDNCQ 262 (370)
Q Consensus 188 ~~~~l~~l~~L~~L~l~~~~l~~~~~--~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~--~l~~l~~L~~L~L~~~~ 262 (370)
....+..+++|++|++++|.++.++. ..+ ..+++|++|++++|+++. ++ .+..+++|++|++++|.
T Consensus 340 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~---------~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~ 410 (520)
T 2z7x_B 340 VFENCGHLTELETLILQMNQLKELSKIAEMT---------TQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI 410 (520)
T ss_dssp TTTTCCCCSSCCEEECCSSCCCBHHHHHHHH---------TTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSC
T ss_pred hhhhhccCCCCCEEEccCCccCccccchHHH---------hhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCC
Confidence 23467889999999999999986532 111 578999999999998877 55 36678999999999998
Q ss_pred chHHhhhccccCCCcccccCCccccccccccccccccccccccCCCccCCCcceEeecCCCCCCCCCCC-CCCCCcceeE
Q 017525 263 DMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSKALPFPHLKEMSVDRCPLLKKLPLD-CNRGLERKIV 341 (370)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~L~~l~~~-~~~~~~~~~~ 341 (370)
....++. .+. ++|+.|++++| .++.++.....+++|++|++++| +++.+|.. .... ..+..
T Consensus 411 l~~~~~~-------------~l~--~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l-~~L~~ 472 (520)
T 2z7x_B 411 LTDTIFR-------------CLP--PRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRL-TSLQK 472 (520)
T ss_dssp CCGGGGG-------------SCC--TTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTC-TTCCE
T ss_pred CCcchhh-------------hhc--ccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHHHhccC-CcccE
Confidence 5443321 222 79999999998 67888777778999999999987 68888876 2222 34444
Q ss_pred Ee
Q 017525 342 IK 343 (370)
Q Consensus 342 ~~ 343 (370)
+.
T Consensus 473 L~ 474 (520)
T 2z7x_B 473 IW 474 (520)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.89 E-value=2.8e-22 Score=181.39 Aligned_cols=284 Identities=16% Similarity=0.125 Sum_probs=200.0
Q ss_pred CcccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCcccccCcc
Q 017525 2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESLPIE 78 (370)
Q Consensus 2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~lp~~ 78 (370)
++.++.+|.. -.++|+.|++++|.++.+++..+.++++|++|++++|. ..|..+..+++|++|++++|.++.+|..
T Consensus 42 ~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~ 120 (332)
T 2ft3_A 42 DLGLKAVPKE-ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPN 120 (332)
T ss_dssp SSCCSSCCSC-CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSS
T ss_pred CCCccccCCC-CCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcc
Confidence 4567777765 34799999999999998877668999999999999998 4478899999999999999999999886
Q ss_pred cccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhh
Q 017525 79 FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHA 158 (370)
Q Consensus 79 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~ 158 (370)
+. ++|++|++++| .+..++...+.++++|++|++++| .+...+ .....+..+ +|+.++++.+....
T Consensus 121 ~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~---------~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 121 LP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGN-PLENSG---------FEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp CC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSC-CCBGGG---------SCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred cc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCC-ccccCC---------CCcccccCC-ccCEEECcCCCCCc
Confidence 65 89999999999 667777766899999999999999 665321 234445555 88888888887766
Q ss_pred hHhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEec
Q 017525 159 FQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISR 238 (370)
Q Consensus 159 ~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 238 (370)
++.... . .++.+.+.++.- .......+..+++|++|++++|.++.++...+ ..+++|++|++++
T Consensus 187 l~~~~~-----~-~L~~L~l~~n~i-~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~---------~~l~~L~~L~L~~ 250 (332)
T 2ft3_A 187 IPKDLP-----E-TLNELHLDHNKI-QAIELEDLLRYSKLYRLGLGHNQIRMIENGSL---------SFLPTLRELHLDN 250 (332)
T ss_dssp CCSSSC-----S-SCSCCBCCSSCC-CCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGG---------GGCTTCCEEECCS
T ss_pred cCcccc-----C-CCCEEECCCCcC-CccCHHHhcCCCCCCEEECCCCcCCcCChhHh---------hCCCCCCEEECCC
Confidence 543211 1 466666665432 22223457778888888888888887754333 5678888898888
Q ss_pred ccccccC-cccCCCCccEEeeccCcchHHhhhccccCCCcccccCCcccccccccccccccccc-ccccCC-CccCCCcc
Q 017525 239 SKFRHAT-WLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNL-KTVHSK-ALPFPHLK 315 (370)
Q Consensus 239 ~~l~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l-~~i~~~-~~~~~~L~ 315 (370)
|+++.++ .+..+++|+.|++++|.. +.+....+.+. .....++.|+.|++++++.. ..+... ...++.|+
T Consensus 251 N~l~~lp~~l~~l~~L~~L~l~~N~l-~~~~~~~~~~~------~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~ 323 (332)
T 2ft3_A 251 NKLSRVPAGLPDLKLLQVVYLHTNNI-TKVGVNDFCPV------GFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRL 323 (332)
T ss_dssp SCCCBCCTTGGGCTTCCEEECCSSCC-CBCCTTSSSCS------SCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCST
T ss_pred CcCeecChhhhcCccCCEEECCCCCC-CccChhHcccc------ccccccccccceEeecCcccccccCcccccccchhh
Confidence 8777765 477788888888888763 33321111100 01122577888888887532 122222 23466777
Q ss_pred eEeecCCC
Q 017525 316 EMSVDRCP 323 (370)
Q Consensus 316 ~L~l~~c~ 323 (370)
.+++.++.
T Consensus 324 ~l~l~~n~ 331 (332)
T 2ft3_A 324 AIQFGNYK 331 (332)
T ss_dssp TEEC----
T ss_pred hhhccccc
Confidence 77777654
No 45
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.89 E-value=2.6e-22 Score=188.64 Aligned_cols=233 Identities=19% Similarity=0.262 Sum_probs=180.3
Q ss_pred cccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCcccccCc-c
Q 017525 3 NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESLPI-E 78 (370)
Q Consensus 3 n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~lp~-~ 78 (370)
+.++.+|.. -.++++.|++++|.++.++...+.++++|++|++++|. ..+..+.++++|++|++++|.++.+|. .
T Consensus 53 ~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 131 (440)
T 3zyj_A 53 KNLREVPDG-ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGA 131 (440)
T ss_dssp CCCSSCCSC-CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTT
T ss_pred CCcCcCCCC-CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhH
Confidence 456777764 34789999999999998887778999999999999998 445778899999999999999998876 5
Q ss_pred cccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhh
Q 017525 79 FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHA 158 (370)
Q Consensus 79 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~ 158 (370)
+..+++|++|++++| .+..++...+.++++|++|++++|..+..++ ...+..+++|+.|+++.|.+..
T Consensus 132 ~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~-----------~~~~~~l~~L~~L~L~~n~l~~ 199 (440)
T 3zyj_A 132 FVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYIS-----------EGAFEGLSNLRYLNLAMCNLRE 199 (440)
T ss_dssp SCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEEC-----------TTTTTTCSSCCEEECTTSCCSS
T ss_pred hhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeC-----------cchhhcccccCeecCCCCcCcc
Confidence 889999999999998 5677777669999999999999864555332 3457778999999999988776
Q ss_pred hHhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEec
Q 017525 159 FQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISR 238 (370)
Q Consensus 159 ~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 238 (370)
++.+.... +|+.|+++++. ++......+..+++|+.|++++|.++.++...+ ..+++|++|+|++
T Consensus 200 ~~~~~~l~-----~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---------~~l~~L~~L~L~~ 264 (440)
T 3zyj_A 200 IPNLTPLI-----KLDELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAF---------DNLQSLVEINLAH 264 (440)
T ss_dssp CCCCTTCS-----SCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTSS---------TTCTTCCEEECTT
T ss_pred ccccCCCc-----ccCEEECCCCc-cCccChhhhccCccCCEEECCCCceeEEChhhh---------cCCCCCCEEECCC
Confidence 65433322 36777777653 333333467778888888888888887765444 5678888888888
Q ss_pred ccccccC--cccCCCCccEEeeccCcc
Q 017525 239 SKFRHAT--WLFLAPNLKRVEIDNCQD 263 (370)
Q Consensus 239 ~~l~~~~--~l~~l~~L~~L~L~~~~~ 263 (370)
|+++.++ .+..+++|+.|+|++|+.
T Consensus 265 N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 265 NNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp SCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred CCCCccChhHhccccCCCEEEcCCCCc
Confidence 8777764 356788888888888763
No 46
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.89 E-value=4.7e-22 Score=192.67 Aligned_cols=294 Identities=20% Similarity=0.206 Sum_probs=204.8
Q ss_pred CcccccccCC--CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccC-
Q 017525 2 TNHIENLVES--PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLP- 76 (370)
Q Consensus 2 ~n~l~~l~~~--~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp- 76 (370)
+|.|+.+++. .++++|++|++++|.++.+++..+.++++|++|++++|. .+|.. .+++|++|++++|.++.+|
T Consensus 61 ~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~ 138 (562)
T 3a79_B 61 QNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPV 138 (562)
T ss_dssp SSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCC
T ss_pred CCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCccccCc
Confidence 5788888854 889999999999999998877778999999999999999 77766 8999999999999998664
Q ss_pred -cccccCCcccEEeccCcccccccCcccccCCCCC--cEEEccccCCC--ccc-ccccccC-----------------Cc
Q 017525 77 -IEFKCLVNLKCLNLEYTYGISRIPPKVISNLKIL--ETLRMYECAAL--PQA-RDSILFG-----------------DC 133 (370)
Q Consensus 77 -~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~~--~~~-~~~~~~~-----------------~~ 133 (370)
..++.+++|++|++++|. +... .+..+++| ++|++++| .+ ... +..+..- ..
T Consensus 139 p~~~~~l~~L~~L~L~~n~-l~~~---~~~~l~~L~L~~L~L~~n-~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~ 213 (562)
T 3a79_B 139 CKEFGNLTKLTFLGLSAAK-FRQL---DLLPVAHLHLSCILLDLV-SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQV 213 (562)
T ss_dssp CGGGGGCTTCCEEEEECSB-CCTT---TTGGGTTSCEEEEEEEES-SCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCC
T ss_pred hHhhcccCcccEEecCCCc-cccC---chhhhhhceeeEEEeecc-cccccccCcccccccCcceEEEEecCccchhhhh
Confidence 689999999999999984 3332 24555555 88998888 54 211 1000000 00
Q ss_pred -------------------------chhhhhccc---------------------------CCCccEEEEEecchh-hhH
Q 017525 134 -------------------------RVLVEELLG---------------------------LEHLSVFTITLNNFH-AFQ 160 (370)
Q Consensus 134 -------------------------~~~~~~l~~---------------------------l~~L~~l~l~~~~~~-~~~ 160 (370)
......+.. ..+|+.++++.+... .++
T Consensus 214 ~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip 293 (562)
T 3a79_B 214 NMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERID 293 (562)
T ss_dssp EEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCC
T ss_pred hhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeecccc
Confidence 000000000 114444444444322 110
Q ss_pred h--------------------------------hhcC-------------------CCCCccccCcEEecCcCCCCcccc
Q 017525 161 R--------------------------------LLGS-------------------CMPQYVSTPSLCLSHFNNSKSLGV 189 (370)
Q Consensus 161 ~--------------------------------~~~~-------------------~~~~~l~L~~l~l~~~~~~~~~~~ 189 (370)
. +... ..+. .++.+++.++.-.. ...
T Consensus 294 ~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~--~L~~L~l~~n~l~~-~~~ 370 (562)
T 3a79_B 294 REEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPS--SFTFLNFTQNVFTD-SVF 370 (562)
T ss_dssp CCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCC--CCCEEECCSSCCCT-TTT
T ss_pred chhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCC--CceEEECCCCcccc-chh
Confidence 0 0000 1122 36777777654332 223
Q ss_pred ccccccCCCcEEEEecCCccccee--ccCCCccccccccccccCcEEEEecccccc-cC--cccCCCCccEEeeccCcch
Q 017525 190 FSLASLRHLQTLQLTYNDLDEIKI--DNGGEVKRVLEISGFHSLKNVYISRSKFRH-AT--WLFLAPNLKRVEIDNCQDM 264 (370)
Q Consensus 190 ~~l~~l~~L~~L~l~~~~l~~~~~--~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~--~l~~l~~L~~L~L~~~~~~ 264 (370)
..+..+++|++|++++|.++.++. ..+ ..+++|++|++++|+++. ++ .+..+++|+.|++++|...
T Consensus 371 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~---------~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 441 (562)
T 3a79_B 371 QGCSTLKRLQTLILQRNGLKNFFKVALMT---------KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT 441 (562)
T ss_dssp TTCCSCSSCCEEECCSSCCCBTTHHHHTT---------TTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCC
T ss_pred hhhcccCCCCEEECCCCCcCCcccchhhh---------cCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCC
Confidence 467889999999999999987642 111 578999999999998876 54 3677899999999999854
Q ss_pred HHhhhccccCCCcccccCCccccccccccccccccccccccCCCccCCCcceEeecCCCCCCCCCCC
Q 017525 265 KEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSKALPFPHLKEMSVDRCPLLKKLPLD 331 (370)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~L~~l~~~ 331 (370)
..++ ..+. ++|+.|+++++ .++.++.....+++|+.|+++++ +++.+|.+
T Consensus 442 ~~~~-------------~~l~--~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~ 491 (562)
T 3a79_B 442 GSVF-------------RCLP--PKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLKSVPDG 491 (562)
T ss_dssp GGGG-------------SSCC--TTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCCCCCTT
T ss_pred cchh-------------hhhc--CcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCCCCCHH
Confidence 4332 1222 79999999998 78888887778999999999986 68888876
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=9.1e-23 Score=182.93 Aligned_cols=234 Identities=16% Similarity=0.147 Sum_probs=185.1
Q ss_pred cccc---cccCC-CCCCCCCEEecCC-CcCC-CCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCccc
Q 017525 3 NHIE---NLVES-PVCPRLRTLFLSS-NIFH-RVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIE 73 (370)
Q Consensus 3 n~l~---~l~~~-~~l~~L~~L~l~~-~~i~-~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~ 73 (370)
|.++ .+|.. .++++|++|++++ |.+. .+|.. +..+++|++|++++|. .+|..+..+++|++|++++|.++
T Consensus 60 ~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 138 (313)
T 1ogq_A 60 LNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS 138 (313)
T ss_dssp CCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred CCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccC
Confidence 4555 46665 8899999999995 7776 56665 8999999999999998 67888999999999999999997
Q ss_pred -ccCcccccCCcccEEeccCcccccccCcccccCCC-CCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEE
Q 017525 74 -SLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLK-ILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTI 151 (370)
Q Consensus 74 -~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l 151 (370)
.+|..++.+++|++|++++|...+.+|.. +.+++ +|++|++++| .+.. ..+..+..++ |+.|++
T Consensus 139 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N-~l~~-----------~~~~~~~~l~-L~~L~L 204 (313)
T 1ogq_A 139 GTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRN-RLTG-----------KIPPTFANLN-LAFVDL 204 (313)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSS-EEEE-----------ECCGGGGGCC-CSEEEC
T ss_pred CcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCC-eeec-----------cCChHHhCCc-ccEEEC
Confidence 78889999999999999999655578876 88888 9999999999 6652 2233445555 888888
Q ss_pred EecchhhhHhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccC
Q 017525 152 TLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSL 231 (370)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L 231 (370)
+.|.+... ....+..+++|++|++++|.+......+ ..+++|
T Consensus 205 s~N~l~~~----------------------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~----------~~l~~L 246 (313)
T 1ogq_A 205 SRNMLEGD----------------------------ASVLFGSDKNTQKIHLAKNSLAFDLGKV----------GLSKNL 246 (313)
T ss_dssp CSSEEEEC----------------------------CGGGCCTTSCCSEEECCSSEECCBGGGC----------CCCTTC
T ss_pred cCCcccCc----------------------------CCHHHhcCCCCCEEECCCCceeeecCcc----------cccCCC
Confidence 77653221 0125677899999999999887554332 567999
Q ss_pred cEEEEecccccc-c-CcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCcccccccccccccccccccc
Q 017525 232 KNVYISRSKFRH-A-TWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKT 303 (370)
Q Consensus 232 ~~L~l~~~~l~~-~-~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~ 303 (370)
++|++++|++++ + .++..+++|+.|+|++|.....++ ....+++|+.+++++++.+-.
T Consensus 247 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip--------------~~~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP--------------QGGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp CEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC--------------CSTTGGGSCGGGTCSSSEEES
T ss_pred CEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC--------------CCccccccChHHhcCCCCccC
Confidence 999999998874 3 457889999999999998654332 337899999999999876544
No 48
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.89 E-value=4.4e-22 Score=195.39 Aligned_cols=119 Identities=27% Similarity=0.258 Sum_probs=92.0
Q ss_pred CcccccccCC--CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cch-hhhhccccCCEEeccCCcccccC
Q 017525 2 TNHIENLVES--PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLL-FEISKVVSLQHLDLSHSRIESLP 76 (370)
Q Consensus 2 ~n~l~~l~~~--~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~-~~~~~l~~L~~L~l~~~~l~~lp 76 (370)
+|.|+.+++. .++++|++|+|++|.|+.+++.+|.++++|++|+|++|. .+| ..|.++++|++|++++|+++.+|
T Consensus 61 ~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~ 140 (635)
T 4g8a_A 61 FNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 140 (635)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCST
T ss_pred CCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCC
Confidence 5778888764 678888888888888888887778888888888888887 444 45788888888888888888777
Q ss_pred c-ccccCCcccEEeccCccccc-ccCcccccCCCCCcEEEccccCCCc
Q 017525 77 I-EFKCLVNLKCLNLEYTYGIS-RIPPKVISNLKILETLRMYECAALP 122 (370)
Q Consensus 77 ~-~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~ 122 (370)
. .++.+++|++|++++|.... ..|. .++++++|++|++++| .+.
T Consensus 141 ~~~~~~L~~L~~L~Ls~N~l~~~~~~~-~~~~l~~L~~L~L~~N-~l~ 186 (635)
T 4g8a_A 141 NFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSN-KIQ 186 (635)
T ss_dssp TCCCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECCSS-CCC
T ss_pred hhhhhcCcccCeeccccCccccCCCch-hhccchhhhhhcccCc-ccc
Confidence 6 47888888888888884332 2334 3778888888888887 554
No 49
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.88 E-value=5.7e-22 Score=186.95 Aligned_cols=232 Identities=18% Similarity=0.214 Sum_probs=176.5
Q ss_pred cccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCcccccCcc-
Q 017525 3 NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESLPIE- 78 (370)
Q Consensus 3 n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~lp~~- 78 (370)
+.++.+|.. -.++++.|++++|.++.+++..+.++++|++|++++|. ..+..+.++++|++|++++|.++.+|..
T Consensus 64 ~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 142 (452)
T 3zyi_A 64 RGLSEVPQG-IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGA 142 (452)
T ss_dssp SCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTT
T ss_pred CCcCccCCC-CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhh
Confidence 456667764 34789999999999998877668999999999999998 4457788999999999999999888764
Q ss_pred cccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhh
Q 017525 79 FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHA 158 (370)
Q Consensus 79 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~ 158 (370)
+..+++|++|++++| .+..++...+.++++|++|++++|..+..++ ...+..+++|+.|+++.|.+..
T Consensus 143 ~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~-----------~~~~~~l~~L~~L~L~~n~l~~ 210 (452)
T 3zyi_A 143 FEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYIS-----------EGAFEGLFNLKYLNLGMCNIKD 210 (452)
T ss_dssp SSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEEC-----------TTTTTTCTTCCEEECTTSCCSS
T ss_pred hcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccC-----------hhhccCCCCCCEEECCCCcccc
Confidence 788999999999998 5677777668999999999999864555332 3356778899999999888776
Q ss_pred hHhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEec
Q 017525 159 FQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISR 238 (370)
Q Consensus 159 ~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 238 (370)
++.+.... +|+.|++.++.- .......+..+++|+.|++++|.++.+....+ ..+++|++|+|++
T Consensus 211 ~~~~~~l~-----~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---------~~l~~L~~L~L~~ 275 (452)
T 3zyi_A 211 MPNLTPLV-----GLEELEMSGNHF-PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAF---------DGLASLVELNLAH 275 (452)
T ss_dssp CCCCTTCT-----TCCEEECTTSCC-SEECGGGGTTCTTCCEEECTTSCCCEECTTTT---------TTCTTCCEEECCS
T ss_pred cccccccc-----cccEEECcCCcC-cccCcccccCccCCCEEEeCCCcCceECHHHh---------cCCCCCCEEECCC
Confidence 65433332 366677766533 22223467778888888888888877755443 5678888888888
Q ss_pred ccccccC--cccCCCCccEEeeccCc
Q 017525 239 SKFRHAT--WLFLAPNLKRVEIDNCQ 262 (370)
Q Consensus 239 ~~l~~~~--~l~~l~~L~~L~L~~~~ 262 (370)
|+++.++ .+..+++|+.|+|++|+
T Consensus 276 N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 276 NNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp SCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CcCCccChHHhccccCCCEEEccCCC
Confidence 8777764 35667888888888776
No 50
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=2e-21 Score=175.61 Aligned_cols=123 Identities=23% Similarity=0.325 Sum_probs=99.3
Q ss_pred CCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cch-hhhhccccCCEEeccCCccccc-CcccccCCcccEEecc
Q 017525 16 RLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLL-FEISKVVSLQHLDLSHSRIESL-PIEFKCLVNLKCLNLE 91 (370)
Q Consensus 16 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~-~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~ 91 (370)
++++++++++.++.+|..+ .+++++|++++|. .++ ..+.++++|++|++++|.++.+ |..++.+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 7899999999888888652 3789999999998 444 4788999999999999999876 6688999999999999
Q ss_pred CcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchh
Q 017525 92 YTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFH 157 (370)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~ 157 (370)
+| .+..+|.. +. ++|++|++++| .+..+ ....+..+++|+.++++.+...
T Consensus 109 ~n-~l~~l~~~-~~--~~L~~L~l~~n-~l~~~-----------~~~~~~~l~~L~~L~l~~n~l~ 158 (330)
T 1xku_A 109 KN-QLKELPEK-MP--KTLQELRVHEN-EITKV-----------RKSVFNGLNQMIVVELGTNPLK 158 (330)
T ss_dssp SS-CCSBCCSS-CC--TTCCEEECCSS-CCCBB-----------CHHHHTTCTTCCEEECCSSCCC
T ss_pred CC-cCCccChh-hc--ccccEEECCCC-ccccc-----------CHhHhcCCccccEEECCCCcCC
Confidence 98 56677765 33 78999999999 66632 2445677889999988887653
No 51
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.88 E-value=4.2e-22 Score=176.28 Aligned_cols=211 Identities=18% Similarity=0.241 Sum_probs=145.4
Q ss_pred cccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCc-cccc-Cc
Q 017525 3 NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSR-IESL-PI 77 (370)
Q Consensus 3 n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~-l~~l-p~ 77 (370)
+.++.+|.. ..++|+.|++++|.++.++...+..+++|++|++++|. ..|..+..+++|++|++++|. ++.+ |.
T Consensus 21 ~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~ 99 (285)
T 1ozn_A 21 QGLQAVPVG-IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPA 99 (285)
T ss_dssp SCCSSCCTT-CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTT
T ss_pred CCcccCCcC-CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHH
Confidence 445566553 35677888888877777776557777888888887776 336667777788888888775 6665 44
Q ss_pred ccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchh
Q 017525 78 EFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFH 157 (370)
Q Consensus 78 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~ 157 (370)
.+..+++|++|++++| .+..++...+.++++|++|++++| .+..++ ...+..+++|+.|+++++.+.
T Consensus 100 ~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~-----------~~~~~~l~~L~~L~l~~n~l~ 166 (285)
T 1ozn_A 100 TFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDN-ALQALP-----------DDTFRDLGNLTHLFLHGNRIS 166 (285)
T ss_dssp TTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCC-----------TTTTTTCTTCCEEECCSSCCC
T ss_pred HhcCCcCCCEEECCCC-cCCEECHhHhhCCcCCCEEECCCC-cccccC-----------HhHhccCCCccEEECCCCccc
Confidence 6777778888888777 444444444777778888888777 555322 233555666777666655422
Q ss_pred hhHhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEe
Q 017525 158 AFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYIS 237 (370)
Q Consensus 158 ~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 237 (370)
.+ ....+..+++|++|++++|.+..+....+ ..+++|++|+++
T Consensus 167 ~~----------------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---------~~l~~L~~L~l~ 209 (285)
T 1ozn_A 167 SV----------------------------PERAFRGLHSLDRLLLHQNRVAHVHPHAF---------RDLGRLMTLYLF 209 (285)
T ss_dssp EE----------------------------CTTTTTTCTTCCEEECCSSCCCEECTTTT---------TTCTTCCEEECC
T ss_pred cc----------------------------CHHHhcCccccCEEECCCCcccccCHhHc---------cCcccccEeeCC
Confidence 11 11246667889999999988887754443 567889999999
Q ss_pred cccccccC--cccCCCCccEEeeccCcch
Q 017525 238 RSKFRHAT--WLFLAPNLKRVEIDNCQDM 264 (370)
Q Consensus 238 ~~~l~~~~--~l~~l~~L~~L~L~~~~~~ 264 (370)
+|++++++ .+..+++|+.|++++|+..
T Consensus 210 ~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 210 ANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp SSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred CCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 99887765 3678899999999988754
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.87 E-value=7.8e-22 Score=179.98 Aligned_cols=147 Identities=24% Similarity=0.328 Sum_probs=125.4
Q ss_pred CcccccccCC--CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhh-hhccccCCEEeccCCcccccC
Q 017525 2 TNHIENLVES--PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFE-ISKVVSLQHLDLSHSRIESLP 76 (370)
Q Consensus 2 ~n~l~~l~~~--~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~-~~~l~~L~~L~l~~~~l~~lp 76 (370)
+|.++.++.. .++++|+.|++++|.++.+++..+.++++|++|++++|. .++.. +.++++|++|++++|.++.+|
T Consensus 61 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~ 140 (353)
T 2z80_A 61 NNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLG 140 (353)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSC
T ss_pred CCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccC
Confidence 5778888874 889999999999999998877668999999999999998 55554 889999999999999999888
Q ss_pred c--ccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEec
Q 017525 77 I--EFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLN 154 (370)
Q Consensus 77 ~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~ 154 (370)
. .++.+++|++|++++|..++.++...+.++++|++|++++| .+.. ..+..+..+++|+.++++.+
T Consensus 141 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~-----------~~~~~l~~l~~L~~L~l~~n 208 (353)
T 2z80_A 141 ETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS-DLQS-----------YEPKSLKSIQNVSHLILHMK 208 (353)
T ss_dssp SSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET-TCCE-----------ECTTTTTTCSEEEEEEEECS
T ss_pred chhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC-CcCc-----------cCHHHHhccccCCeecCCCC
Confidence 7 68899999999999986677776656999999999999999 6653 23556778899999999988
Q ss_pred chhhhH
Q 017525 155 NFHAFQ 160 (370)
Q Consensus 155 ~~~~~~ 160 (370)
....++
T Consensus 209 ~l~~~~ 214 (353)
T 2z80_A 209 QHILLL 214 (353)
T ss_dssp CSTTHH
T ss_pred ccccch
Confidence 765544
No 53
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.86 E-value=1.7e-20 Score=182.09 Aligned_cols=245 Identities=16% Similarity=0.133 Sum_probs=174.3
Q ss_pred CcccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCccc
Q 017525 2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEF 79 (370)
Q Consensus 2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~ 79 (370)
+|.++.+|.... ++|+.|++++|.++.+|. .+++|++|++++|. .+|. .+++|++|++++|.++.+|.
T Consensus 49 ~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~-- 118 (622)
T 3g06_A 49 ESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA-- 118 (622)
T ss_dssp SSCCSCCCSCCC-TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC--
T ss_pred CCCcCccChhhC-CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC--
Confidence 466777777522 788889998888888776 57888889998888 5665 67888888998888888876
Q ss_pred ccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhh
Q 017525 80 KCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAF 159 (370)
Q Consensus 80 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~ 159 (370)
.+++|+.|++++| .+..+|.. +++|++|++++| .+..++ . ...+|+.|++..|.+..+
T Consensus 119 -~l~~L~~L~L~~N-~l~~lp~~----l~~L~~L~Ls~N-~l~~l~---------~------~~~~L~~L~L~~N~l~~l 176 (622)
T 3g06_A 119 -LPSGLCKLWIFGN-QLTSLPVL----PPGLQELSVSDN-QLASLP---------A------LPSELCKLWAYNNQLTSL 176 (622)
T ss_dssp -CCTTCCEEECCSS-CCSCCCCC----CTTCCEEECCSS-CCSCCC---------C------CCTTCCEEECCSSCCSCC
T ss_pred -CCCCcCEEECCCC-CCCcCCCC----CCCCCEEECcCC-cCCCcC---------C------ccCCCCEEECCCCCCCCC
Confidence 5678888888888 56666653 488888888888 665433 1 235677777777776655
Q ss_pred HhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecc
Q 017525 160 QRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRS 239 (370)
Q Consensus 160 ~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 239 (370)
+. .+. +|+.|.++++.-.... ..+++|+.|++++|.++.++ ..+++|++|++++|
T Consensus 177 ~~-----~~~--~L~~L~Ls~N~l~~l~-----~~~~~L~~L~L~~N~l~~l~-------------~~~~~L~~L~Ls~N 231 (622)
T 3g06_A 177 PM-----LPS--GLQELSVSDNQLASLP-----TLPSELYKLWAYNNRLTSLP-------------ALPSGLKELIVSGN 231 (622)
T ss_dssp CC-----CCT--TCCEEECCSSCCSCCC-----CCCTTCCEEECCSSCCSSCC-------------CCCTTCCEEECCSS
T ss_pred cc-----cCC--CCcEEECCCCCCCCCC-----CccchhhEEECcCCcccccC-------------CCCCCCCEEEccCC
Confidence 41 111 4666776665422111 12367888888888777654 33578888888888
Q ss_pred cccccCcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccccccccCCCccCCCcceEee
Q 017525 240 KFRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSKALPFPHLKEMSV 319 (370)
Q Consensus 240 ~l~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l 319 (370)
+++.++ ..+++|+.|++++|.. +.+ +. .+++|+.|++++| .++.++.....+++|+.|++
T Consensus 232 ~L~~lp--~~l~~L~~L~Ls~N~L-~~l-------------p~---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 232 RLTSLP--VLPSELKELMVSGNRL-TSL-------------PM---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNL 291 (622)
T ss_dssp CCSCCC--CCCTTCCEEECCSSCC-SCC-------------CC---CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEEC
T ss_pred ccCcCC--CCCCcCcEEECCCCCC-CcC-------------Cc---ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEe
Confidence 887776 4568888888888753 222 11 5678888888887 67777666667888888888
Q ss_pred cCCC
Q 017525 320 DRCP 323 (370)
Q Consensus 320 ~~c~ 323 (370)
.+++
T Consensus 292 ~~N~ 295 (622)
T 3g06_A 292 EGNP 295 (622)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 8775
No 54
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.86 E-value=1.1e-21 Score=176.24 Aligned_cols=262 Identities=16% Similarity=0.102 Sum_probs=170.9
Q ss_pred CCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCcccccCcccccCCcccEEecc
Q 017525 15 PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLE 91 (370)
Q Consensus 15 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~ 91 (370)
..++..+++.+.+...+...+..+++|++|++++|. ..|..+..+++|++|++++|.++.++. +..+++|++|+++
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls 88 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLN 88 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECC
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECc
Confidence 446667777777776667767888999999999998 455788999999999999999986665 8899999999999
Q ss_pred CcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCCcc
Q 017525 92 YTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYV 171 (370)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l 171 (370)
+| .+..+ ...++|++|++++| .+..++ ...+++|+.++++.+.+..+..... ..+.
T Consensus 89 ~n-~l~~l-----~~~~~L~~L~l~~n-~l~~~~--------------~~~~~~L~~L~l~~N~l~~~~~~~~-~~l~-- 144 (317)
T 3o53_A 89 NN-YVQEL-----LVGPSIETLHAANN-NISRVS--------------CSRGQGKKNIYLANNKITMLRDLDE-GCRS-- 144 (317)
T ss_dssp SS-EEEEE-----EECTTCCEEECCSS-CCSEEE--------------ECCCSSCEEEECCSSCCCSGGGBCT-GGGS--
T ss_pred CC-ccccc-----cCCCCcCEEECCCC-ccCCcC--------------ccccCCCCEEECCCCCCCCccchhh-hccC--
Confidence 98 44443 34589999999999 776432 1235788999998887665432110 0111
Q ss_pred ccCcEEecCcCCCCccccccc-cccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccccccC-cccC
Q 017525 172 STPSLCLSHFNNSKSLGVFSL-ASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHAT-WLFL 249 (370)
Q Consensus 172 ~L~~l~l~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~l~~ 249 (370)
.|+.++++++.-. ......+ ..+++|++|++++|.++.++.. ..+++|++|++++|+++.++ .+..
T Consensus 145 ~L~~L~Ls~N~l~-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-----------~~l~~L~~L~Ls~N~l~~l~~~~~~ 212 (317)
T 3o53_A 145 RVQYLDLKLNEID-TVNFAELAASSDTLEHLNLQYNFIYDVKGQ-----------VVFAKLKTLDLSSNKLAFMGPEFQS 212 (317)
T ss_dssp SEEEEECTTSCCC-EEEGGGGGGGTTTCCEEECTTSCCCEEECC-----------CCCTTCCEEECCSSCCCEECGGGGG
T ss_pred CCCEEECCCCCCC-cccHHHHhhccCcCCEEECCCCcCcccccc-----------cccccCCEEECCCCcCCcchhhhcc
Confidence 3566666554322 2212223 3566777777777776665321 23667777777777666553 3556
Q ss_pred CCCccEEeeccCcchHHhhhccccCCCcccccCCcccccccccccccccccc-ccccCCCccCCCcceEeecCCCCCCC
Q 017525 250 APNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNL-KTVHSKALPFPHLKEMSVDRCPLLKK 327 (370)
Q Consensus 250 l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l-~~i~~~~~~~~~L~~L~l~~c~~L~~ 327 (370)
+++|+.|++++|... .+ +..+..+++|+.|++++++-. ..++.....++.|+.+++.++..++.
T Consensus 213 l~~L~~L~L~~N~l~-~l-------------~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 213 AAGVTWISLRNNKLV-LI-------------EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp GTTCSEEECTTSCCC-EE-------------CTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred cCcccEEECcCCccc-ch-------------hhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence 677777777776532 22 234556677777777766322 12222233466667666665555554
No 55
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.86 E-value=4.5e-20 Score=181.08 Aligned_cols=117 Identities=23% Similarity=0.228 Sum_probs=101.6
Q ss_pred ccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cc-hhhhhccccCCEEeccCCcccccCc-cc
Q 017525 4 HIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PL-LFEISKVVSLQHLDLSHSRIESLPI-EF 79 (370)
Q Consensus 4 ~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~-~~~~~~l~~L~~L~l~~~~l~~lp~-~~ 79 (370)
+++.+|.. =.+++++|+|++|.|+.+++..|.++++|++|++++|. .+ +.+|.++++|++|++++|+++.+|. .+
T Consensus 42 ~l~~vP~~-lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f 120 (635)
T 4g8a_A 42 NFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF 120 (635)
T ss_dssp CCSSCCSS-SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGG
T ss_pred CcCccCCC-CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHh
Confidence 56777764 12589999999999999998779999999999999998 44 4578999999999999999998886 57
Q ss_pred ccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcc
Q 017525 80 KCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQ 123 (370)
Q Consensus 80 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 123 (370)
+.+++|++|++++| .+..++...|+++++|++|++++| .+..
T Consensus 121 ~~L~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~ 162 (635)
T 4g8a_A 121 SGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHN-LIQS 162 (635)
T ss_dssp TTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSS-CCCC
T ss_pred cCCCCCCEEECCCC-cCCCCChhhhhcCcccCeeccccC-cccc
Confidence 89999999999999 667777766999999999999999 6653
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.85 E-value=2e-20 Score=175.81 Aligned_cols=240 Identities=17% Similarity=0.183 Sum_probs=179.4
Q ss_pred CCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCcccccCc-ccccCCcccEEecc
Q 017525 16 RLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESLPI-EFKCLVNLKCLNLE 91 (370)
Q Consensus 16 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~ 91 (370)
..+.++..+..++.+|..+ .+++++|++++|. ..+..+.++++|++|++++|.++.++. .+..+++|++|+++
T Consensus 44 ~~~~v~c~~~~l~~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCSSCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcCcCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 4577888888899998752 3789999999998 445788999999999999999987764 68899999999999
Q ss_pred CcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecch-hhhHhhhcCCCCCc
Q 017525 92 YTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNF-HAFQRLLGSCMPQY 170 (370)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~-~~~~~~~~~~~~~~ 170 (370)
+| .+..++...+.++++|++|++++| .+..++ ...+..+++|+.|+++.+.. ..++. .....+.
T Consensus 121 ~n-~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~-----------~~~~~~l~~L~~L~l~~~~~l~~i~~-~~~~~l~- 185 (440)
T 3zyj_A 121 DN-RLTTIPNGAFVYLSKLKELWLRNN-PIESIP-----------SYAFNRIPSLRRLDLGELKRLSYISE-GAFEGLS- 185 (440)
T ss_dssp SS-CCSSCCTTTSCSCSSCCEEECCSC-CCCEEC-----------TTTTTTCTTCCEEECCCCTTCCEECT-TTTTTCS-
T ss_pred CC-cCCeeCHhHhhccccCceeeCCCC-cccccC-----------HHHhhhCcccCEeCCCCCCCcceeCc-chhhccc-
Confidence 98 677777766999999999999999 776433 34577889999999987432 22221 1111222
Q ss_pred cccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccccccC--ccc
Q 017525 171 VSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHAT--WLF 248 (370)
Q Consensus 171 l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~--~l~ 248 (370)
+|+.|.+.++.-.. ++.+..+++|+.|++++|.++.+....+ ..+++|++|++++|+++.+. .+.
T Consensus 186 -~L~~L~L~~n~l~~---~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---------~~l~~L~~L~L~~n~l~~~~~~~~~ 252 (440)
T 3zyj_A 186 -NLRYLNLAMCNLRE---IPNLTPLIKLDELDLSGNHLSAIRPGSF---------QGLMHLQKLWMIQSQIQVIERNAFD 252 (440)
T ss_dssp -SCCEEECTTSCCSS---CCCCTTCSSCCEEECTTSCCCEECTTTT---------TTCTTCCEEECTTCCCCEECTTSST
T ss_pred -ccCeecCCCCcCcc---ccccCCCcccCEEECCCCccCccChhhh---------ccCccCCEEECCCCceeEEChhhhc
Confidence 37777777664332 2357778889999999988887755443 56788999999988777753 467
Q ss_pred CCCCccEEeeccCcchHHhhhccccCCCcccccCCcccccccccccccccc
Q 017525 249 LAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELK 299 (370)
Q Consensus 249 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 299 (370)
.+++|+.|+|++|... .+. +..+..+++|+.|++++++
T Consensus 253 ~l~~L~~L~L~~N~l~-~~~------------~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 253 NLQSLVEINLAHNNLT-LLP------------HDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TCTTCCEEECTTSCCC-CCC------------TTTTSSCTTCCEEECCSSC
T ss_pred CCCCCCEEECCCCCCC-ccC------------hhHhccccCCCEEEcCCCC
Confidence 7889999999888643 221 1356678888888888754
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.85 E-value=1.9e-20 Score=176.53 Aligned_cols=240 Identities=16% Similarity=0.127 Sum_probs=178.2
Q ss_pred CCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCcccccC-cccccCCcccEEecc
Q 017525 16 RLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESLP-IEFKCLVNLKCLNLE 91 (370)
Q Consensus 16 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~ 91 (370)
..+.++.++..++.+|.. -.+++++|++++|. ..+..+.++++|++|++++|.++.++ ..+..+++|++|+++
T Consensus 55 ~~~~v~c~~~~l~~iP~~---~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQG---IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCSSCCSC---CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcCccCCC---CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 357788888888888875 23689999999998 45678899999999999999998766 468899999999999
Q ss_pred CcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecc-hhhhHhhhcCCCCCc
Q 017525 92 YTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNN-FHAFQRLLGSCMPQY 170 (370)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~-~~~~~~~~~~~~~~~ 170 (370)
+| .+..++...+.++++|++|++++| .+..++ ...+..+++|+.|+++.+. ...++. .....+.
T Consensus 132 ~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~-----------~~~~~~l~~L~~L~l~~~~~l~~i~~-~~~~~l~- 196 (452)
T 3zyi_A 132 DN-WLTVIPSGAFEYLSKLRELWLRNN-PIESIP-----------SYAFNRVPSLMRLDLGELKKLEYISE-GAFEGLF- 196 (452)
T ss_dssp SS-CCSBCCTTTSSSCTTCCEEECCSC-CCCEEC-----------TTTTTTCTTCCEEECCCCTTCCEECT-TTTTTCT-
T ss_pred CC-cCCccChhhhcccCCCCEEECCCC-CcceeC-----------HhHHhcCCcccEEeCCCCCCccccCh-hhccCCC-
Confidence 99 677777777999999999999999 776433 3457788999999998743 222221 1111222
Q ss_pred cccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEeccccccc--Cccc
Q 017525 171 VSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHA--TWLF 248 (370)
Q Consensus 171 l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~l~ 248 (370)
+|+.|.+.++.-... +.+..+++|+.|++++|.++.+....+ ..+++|++|++++|+++.+ ..+.
T Consensus 197 -~L~~L~L~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~---------~~l~~L~~L~L~~n~l~~~~~~~~~ 263 (452)
T 3zyi_A 197 -NLKYLNLGMCNIKDM---PNLTPLVGLEELEMSGNHFPEIRPGSF---------HGLSSLKKLWVMNSQVSLIERNAFD 263 (452)
T ss_dssp -TCCEEECTTSCCSSC---CCCTTCTTCCEEECTTSCCSEECGGGG---------TTCTTCCEEECTTSCCCEECTTTTT
T ss_pred -CCCEEECCCCccccc---ccccccccccEEECcCCcCcccCcccc---------cCccCCCEEEeCCCcCceECHHHhc
Confidence 367777766543322 357778888899998888887755443 5678889999988877765 3467
Q ss_pred CCCCccEEeeccCcchHHhhhccccCCCcccccCCcccccccccccccccc
Q 017525 249 LAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELK 299 (370)
Q Consensus 249 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 299 (370)
.+++|+.|+|++|.. +.+. +..+..+++|+.|++++++
T Consensus 264 ~l~~L~~L~L~~N~l-~~~~------------~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 264 GLASLVELNLAHNNL-SSLP------------HDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TCTTCCEEECCSSCC-SCCC------------TTSSTTCTTCCEEECCSSC
T ss_pred CCCCCCEEECCCCcC-CccC------------hHHhccccCCCEEEccCCC
Confidence 788899999988864 3331 1356678888888888753
No 58
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.84 E-value=7.7e-20 Score=172.01 Aligned_cols=170 Identities=23% Similarity=0.228 Sum_probs=90.4
Q ss_pred cccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccc
Q 017525 3 NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFK 80 (370)
Q Consensus 3 n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~ 80 (370)
|.++.+|.. .++|+.|++++|.++.+|.. +++|++|++++|. .++.. .++|++|++++|.++.+| .++
T Consensus 81 ~~l~~lp~~--~~~L~~L~l~~n~l~~lp~~----~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp-~~~ 150 (454)
T 1jl5_A 81 LGLSSLPEL--PPHLESLVASCNSLTELPEL----PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLP-ELQ 150 (454)
T ss_dssp SCCSCCCSC--CTTCSEEECCSSCCSSCCCC----CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCC-CCT
T ss_pred CccccCCCC--cCCCCEEEccCCcCCccccc----cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCc-ccC
Confidence 455555552 36777777777777666542 3566666666665 33221 146666666666666666 466
Q ss_pred cCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhH
Q 017525 81 CLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQ 160 (370)
Q Consensus 81 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~ 160 (370)
.+++|++|++++| .+..+|.. ..+|++|++++| .+..+ ..+..+++|+.+++++|.+..++
T Consensus 151 ~l~~L~~L~l~~N-~l~~lp~~----~~~L~~L~L~~n-~l~~l-------------~~~~~l~~L~~L~l~~N~l~~l~ 211 (454)
T 1jl5_A 151 NSSFLKIIDVDNN-SLKKLPDL----PPSLEFIAAGNN-QLEEL-------------PELQNLPFLTAIYADNNSLKKLP 211 (454)
T ss_dssp TCTTCCEEECCSS-CCSCCCCC----CTTCCEEECCSS-CCSSC-------------CCCTTCTTCCEEECCSSCCSSCC
T ss_pred CCCCCCEEECCCC-cCcccCCC----cccccEEECcCC-cCCcC-------------ccccCCCCCCEEECCCCcCCcCC
Confidence 6666666666666 33444432 235666666666 44421 13455556666666655544332
Q ss_pred hhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccc
Q 017525 161 RLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEI 211 (370)
Q Consensus 161 ~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~ 211 (370)
... . .++.+.+.++.-. . ++.+..+++|++|++++|.++.+
T Consensus 212 ~~~------~-~L~~L~l~~n~l~-~--lp~~~~l~~L~~L~l~~N~l~~l 252 (454)
T 1jl5_A 212 DLP------L-SLESIVAGNNILE-E--LPELQNLPFLTTIYADNNLLKTL 252 (454)
T ss_dssp CCC------T-TCCEEECCSSCCS-S--CCCCTTCTTCCEEECCSSCCSSC
T ss_pred CCc------C-cccEEECcCCcCC-c--ccccCCCCCCCEEECCCCcCCcc
Confidence 211 1 3555555544322 1 12344555555555555555443
No 59
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.84 E-value=3.3e-20 Score=174.53 Aligned_cols=170 Identities=19% Similarity=0.213 Sum_probs=110.4
Q ss_pred cccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccc
Q 017525 3 NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFK 80 (370)
Q Consensus 3 n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~ 80 (370)
|.++.++.. .++|++|++++|.++.+|. +.++++|++|++++|. .+|..+ .+|++|++++|.++.+| .++
T Consensus 121 n~l~~l~~~--~~~L~~L~L~~n~l~~lp~--~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~ 192 (454)
T 1jl5_A 121 NNLKALSDL--PPLLEYLGVSNNQLEKLPE--LQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQ 192 (454)
T ss_dssp SCCSCCCSC--CTTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCT
T ss_pred CccCcccCC--CCCCCEEECcCCCCCCCcc--cCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-ccc
Confidence 444444432 2688999999988888873 7888999999999887 555433 48888888888888777 578
Q ss_pred cCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhH
Q 017525 81 CLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQ 160 (370)
Q Consensus 81 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~ 160 (370)
.+++|+.|++++| .+..+|.. .++|++|++++| .+..++ .+..+++|+.++++++....++
T Consensus 193 ~l~~L~~L~l~~N-~l~~l~~~----~~~L~~L~l~~n-~l~~lp-------------~~~~l~~L~~L~l~~N~l~~l~ 253 (454)
T 1jl5_A 193 NLPFLTAIYADNN-SLKKLPDL----PLSLESIVAGNN-ILEELP-------------ELQNLPFLTTIYADNNLLKTLP 253 (454)
T ss_dssp TCTTCCEEECCSS-CCSSCCCC----CTTCCEEECCSS-CCSSCC-------------CCTTCTTCCEEECCSSCCSSCC
T ss_pred CCCCCCEEECCCC-cCCcCCCC----cCcccEEECcCC-cCCccc-------------ccCCCCCCCEEECCCCcCCccc
Confidence 8888888888887 44445442 257888888877 665322 2556777777777777665543
Q ss_pred hhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccc
Q 017525 161 RLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEI 211 (370)
Q Consensus 161 ~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~ 211 (370)
... . .++.+.+.++.-.... . .+++|+.|++++|.++.+
T Consensus 254 ~~~------~-~L~~L~l~~N~l~~l~---~--~~~~L~~L~ls~N~l~~l 292 (454)
T 1jl5_A 254 DLP------P-SLEALNVRDNYLTDLP---E--LPQSLTFLDVSENIFSGL 292 (454)
T ss_dssp SCC------T-TCCEEECCSSCCSCCC---C--CCTTCCEEECCSSCCSEE
T ss_pred ccc------c-ccCEEECCCCcccccC---c--ccCcCCEEECcCCccCcc
Confidence 211 1 3566666554322111 1 124566666666665543
No 60
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=7e-21 Score=180.81 Aligned_cols=238 Identities=15% Similarity=0.136 Sum_probs=180.4
Q ss_pred CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccccCCcccEEe
Q 017525 12 PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLN 89 (370)
Q Consensus 12 ~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~ 89 (370)
..+++|+.|++++|.++.+++..+..+++|++|++++|. ..++ +..+++|++|++++|.++.+|.. ++|+.|+
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~ 105 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVG----PSIETLH 105 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEEC----TTCCEEE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCC----CCcCEEE
Confidence 345699999999999999887779999999999999998 3443 88999999999999999877643 8999999
Q ss_pred ccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhH--hhh-cCC
Q 017525 90 LEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQ--RLL-GSC 166 (370)
Q Consensus 90 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~--~~~-~~~ 166 (370)
+++| .+..++. ..+++|+.|++++| .+.. .....+..+++|+.|++++|.+.... .+. ...
T Consensus 106 L~~N-~l~~~~~---~~l~~L~~L~L~~N-~l~~-----------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~ 169 (487)
T 3oja_A 106 AANN-NISRVSC---SRGQGKKNIYLANN-KITM-----------LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169 (487)
T ss_dssp CCSS-CCCCEEE---CCCSSCEEEECCSS-CCCS-----------GGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTT
T ss_pred CcCC-cCCCCCc---cccCCCCEEECCCC-CCCC-----------CCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCC
Confidence 9999 4444443 34688999999999 7763 22445677899999999998776532 222 222
Q ss_pred CCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccccccC-
Q 017525 167 MPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHAT- 245 (370)
Q Consensus 167 ~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~- 245 (370)
.|+.|+++++.-... .....+++|++|++++|.++.++..+ ..+++|+.|++++|.++.++
T Consensus 170 -----~L~~L~Ls~N~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~----------~~l~~L~~L~Ls~N~l~~lp~ 231 (487)
T 3oja_A 170 -----TLEHLNLQYNFIYDV---KGQVVFAKLKTLDLSSNKLAFMGPEF----------QSAAGVTWISLRNNKLVLIEK 231 (487)
T ss_dssp -----TCCEEECTTSCCCEE---ECCCCCTTCCEEECCSSCCCEECGGG----------GGGTTCSEEECTTSCCCEECT
T ss_pred -----cccEEecCCCccccc---cccccCCCCCEEECCCCCCCCCCHhH----------cCCCCccEEEecCCcCcccch
Confidence 377777777653322 24556889999999999998876554 56889999999999888765
Q ss_pred cccCCCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccc
Q 017525 246 WLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKN 300 (370)
Q Consensus 246 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~ 300 (370)
.+..+++|+.|++++|......+ +..+..++.|+.+.+..+..
T Consensus 232 ~l~~l~~L~~L~l~~N~l~c~~~------------~~~~~~l~~L~~l~~~~~~~ 274 (487)
T 3oja_A 232 ALRFSQNLEHFDLRGNGFHCGTL------------RDFFSKNQRVQTVAKQTVKK 274 (487)
T ss_dssp TCCCCTTCCEEECTTCCBCHHHH------------HHHHTTCHHHHHHHHHHHHH
T ss_pred hhccCCCCCEEEcCCCCCcCcch------------HHHHHhCCCCcEEecccccc
Confidence 46778899999999988652221 23566778888888865443
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.84 E-value=2.3e-20 Score=166.76 Aligned_cols=213 Identities=21% Similarity=0.235 Sum_probs=168.5
Q ss_pred CcccccccCC--CCCCCCCEEecCCCcCCCC---ChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccc
Q 017525 2 TNHIENLVES--PVCPRLRTLFLSSNIFHRV---NSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIES 74 (370)
Q Consensus 2 ~n~l~~l~~~--~~l~~L~~L~l~~~~i~~~---~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~ 74 (370)
+|.++.+|.. .++++|+.|++++|.++.+ +.. +..+++|++|++++|. .+|..+..+++|++|++++|.++.
T Consensus 37 ~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~ 115 (306)
T 2z66_A 37 SNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS-DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ 115 (306)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH-HHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEES
T ss_pred CCccCccCHhHhhccccCCEEECCCCccCcccCcccc-cccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccc
Confidence 5778889885 6899999999999988755 344 6789999999999999 778888999999999999999987
Q ss_pred cCc--ccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEE
Q 017525 75 LPI--EFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTIT 152 (370)
Q Consensus 75 lp~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~ 152 (370)
++. .+..+++|++|++++|. +...+...+.++++|++|++++| .+.. ...+..+..+++|+.|+++
T Consensus 116 ~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~----------~~~~~~~~~l~~L~~L~Ls 183 (306)
T 2z66_A 116 MSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGN-SFQE----------NFLPDIFTELRNLTFLDLS 183 (306)
T ss_dssp STTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTC-EEGG----------GEECSCCTTCTTCCEEECT
T ss_pred cccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCC-cccc----------ccchhHHhhCcCCCEEECC
Confidence 764 68899999999999994 44444444899999999999999 5542 0134456777888888877
Q ss_pred ecchhhhHhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCc
Q 017525 153 LNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLK 232 (370)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~ 232 (370)
++.+... ....+..+++|++|++++|.++.++...+ ..+++|+
T Consensus 184 ~n~l~~~----------------------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~---------~~l~~L~ 226 (306)
T 2z66_A 184 QCQLEQL----------------------------SPTAFNSLSSLQVLNMSHNNFFSLDTFPY---------KCLNSLQ 226 (306)
T ss_dssp TSCCCEE----------------------------CTTTTTTCTTCCEEECTTSCCSBCCSGGG---------TTCTTCC
T ss_pred CCCcCCc----------------------------CHHHhcCCCCCCEEECCCCccCccChhhc---------cCcccCC
Confidence 6643211 01246678899999999999988765333 5689999
Q ss_pred EEEEeccccccc--CcccCCC-CccEEeeccCcch
Q 017525 233 NVYISRSKFRHA--TWLFLAP-NLKRVEIDNCQDM 264 (370)
Q Consensus 233 ~L~l~~~~l~~~--~~l~~l~-~L~~L~L~~~~~~ 264 (370)
+|++++|++++. ..+..++ +|+.|++++|...
T Consensus 227 ~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 227 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp EEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred EeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 999999988764 3466775 8999999998753
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.83 E-value=2.5e-21 Score=173.56 Aligned_cols=241 Identities=15% Similarity=0.073 Sum_probs=152.5
Q ss_pred CCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC----cchhhhh-------ccccCCEEeccCCccc-ccCccc-
Q 017525 13 VCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN----PLLFEIS-------KVVSLQHLDLSHSRIE-SLPIEF- 79 (370)
Q Consensus 13 ~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~----~~~~~~~-------~l~~L~~L~l~~~~l~-~lp~~~- 79 (370)
..++|+.|++++|.+ .+|..+... |++|+++++. .+|..+. ++++|++|++++|+++ .+|..+
T Consensus 41 ~~~~L~~l~l~~n~l-~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE-ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEECTTHHHHCCTT-CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred cCCCceeEeeccccc-ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 455677777777777 666653332 6777777766 3454444 5777888888887776 566654
Q ss_pred -ccCCcccEEeccCcccccccCcccccCC-----CCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEe
Q 017525 80 -KCLVNLKCLNLEYTYGISRIPPKVISNL-----KILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITL 153 (370)
Q Consensus 80 -~~l~~L~~L~l~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~ 153 (370)
+.+++|++|++++| .+...|.. ++++ ++|++|++++| .+..+ ....+..+++|+.|++++
T Consensus 117 ~~~l~~L~~L~Ls~N-~l~~~~~~-~~~l~~~~~~~L~~L~L~~N-~l~~~-----------~~~~~~~l~~L~~L~Ls~ 182 (312)
T 1wwl_A 117 EATGPDLNILNLRNV-SWATRDAW-LAELQQWLKPGLKVLSIAQA-HSLNF-----------SCEQVRVFPALSTLDLSD 182 (312)
T ss_dssp SCCSCCCSEEEEESC-BCSSSSSH-HHHHHTTCCTTCCEEEEESC-SCCCC-----------CTTTCCCCSSCCEEECCS
T ss_pred HhcCCCccEEEccCC-CCcchhHH-HHHHHHhhcCCCcEEEeeCC-CCccc-----------hHHHhccCCCCCEEECCC
Confidence 67778888888777 34444533 5555 77888888777 55532 234566777777888777
Q ss_pred cchhhh-HhhhcC--CCCCccccCcEEecCcCCCCccc--cccccccCCCcEEEEecCCccccee-ccCCCccccccccc
Q 017525 154 NNFHAF-QRLLGS--CMPQYVSTPSLCLSHFNNSKSLG--VFSLASLRHLQTLQLTYNDLDEIKI-DNGGEVKRVLEISG 227 (370)
Q Consensus 154 ~~~~~~-~~~~~~--~~~~~l~L~~l~l~~~~~~~~~~--~~~l~~l~~L~~L~l~~~~l~~~~~-~~~~~~~~~~~~~~ 227 (370)
|...+. ...... ..+. +|+.+.+.++.-..... ...+..+++|++|++++|.++.... ... ..
T Consensus 183 N~l~~~~~~~~~~~~~~l~--~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---------~~ 251 (312)
T 1wwl_A 183 NPELGERGLISALCPLKFP--TLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC---------DW 251 (312)
T ss_dssp CTTCHHHHHHHHSCTTSCT--TCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCC---------CC
T ss_pred CCcCcchHHHHHHHhccCC--CCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhh---------hh
Confidence 764331 111111 2222 36677776654321111 1233466889999999888877542 111 34
Q ss_pred cccCcEEEEecccccccCcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccc
Q 017525 228 FHSLKNVYISRSKFRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEEL 298 (370)
Q Consensus 228 ~~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~ 298 (370)
+++|++|++++|+++.++.... ++|+.|++++|.. +.+ + .+..+++|+.|+++++
T Consensus 252 l~~L~~L~Ls~N~l~~ip~~~~-~~L~~L~Ls~N~l-~~~-------------p-~~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLKQVPKGLP-AKLSVLDLSYNRL-DRN-------------P-SPDELPQVGNLSLKGN 306 (312)
T ss_dssp CTTCCEEECTTSCCSSCCSSCC-SEEEEEECCSSCC-CSC-------------C-CTTTSCEEEEEECTTC
T ss_pred cCCCCEEECCCCccChhhhhcc-CCceEEECCCCCC-CCC-------------h-hHhhCCCCCEEeccCC
Confidence 6889999999888877653222 7889999988864 222 1 3667888999988886
No 63
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=5.2e-20 Score=164.56 Aligned_cols=190 Identities=21% Similarity=0.245 Sum_probs=131.0
Q ss_pred CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccccCCcccEEe
Q 017525 12 PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLN 89 (370)
Q Consensus 12 ~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~ 89 (370)
.++++|+.|++++|.++.++. +..+++|++|++++|. .++. +..+++|++|++++|.++.++ .+..+++|+.|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~~--~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEE
T ss_pred HHcCCcCEEEeeCCCccCchh--hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEE
Confidence 456777777777777777653 6777777777777777 4444 777777777777777777665 466777777777
Q ss_pred ccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCC
Q 017525 90 LEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQ 169 (370)
Q Consensus 90 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~ 169 (370)
+++| .+..++. +.++++|++|++++| .+..++ .+..+++|+.|+++.+.+..+
T Consensus 114 l~~n-~l~~~~~--l~~l~~L~~L~l~~n-~l~~~~-------------~l~~l~~L~~L~l~~n~l~~~---------- 166 (308)
T 1h6u_A 114 LTST-QITDVTP--LAGLSNLQVLYLDLN-QITNIS-------------PLAGLTNLQYLSIGNAQVSDL---------- 166 (308)
T ss_dssp CTTS-CCCCCGG--GTTCTTCCEEECCSS-CCCCCG-------------GGGGCTTCCEEECCSSCCCCC----------
T ss_pred CCCC-CCCCchh--hcCCCCCCEEECCCC-ccCcCc-------------cccCCCCccEEEccCCcCCCC----------
Confidence 7777 4444443 677777777777777 554322 155566666666655432211
Q ss_pred ccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccccccCcccC
Q 017525 170 YVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATWLFL 249 (370)
Q Consensus 170 ~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~l~~ 249 (370)
..+..+++|+.|++++|.++.++. + ..+++|++|++++|++++++.+..
T Consensus 167 --------------------~~l~~l~~L~~L~l~~n~l~~~~~-l----------~~l~~L~~L~L~~N~l~~~~~l~~ 215 (308)
T 1h6u_A 167 --------------------TPLANLSKLTTLKADDNKISDISP-L----------ASLPNLIEVHLKNNQISDVSPLAN 215 (308)
T ss_dssp --------------------GGGTTCTTCCEEECCSSCCCCCGG-G----------GGCTTCCEEECTTSCCCBCGGGTT
T ss_pred --------------------hhhcCCCCCCEEECCCCccCcChh-h----------cCCCCCCEEEccCCccCccccccC
Confidence 125566788888888888776643 1 567888888888888877777778
Q ss_pred CCCccEEeeccCcc
Q 017525 250 APNLKRVEIDNCQD 263 (370)
Q Consensus 250 l~~L~~L~L~~~~~ 263 (370)
+++|+.|++++|..
T Consensus 216 l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 216 TSNLFIVTLTNQTI 229 (308)
T ss_dssp CTTCCEEEEEEEEE
T ss_pred CCCCCEEEccCCee
Confidence 88888888888764
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.83 E-value=6.6e-20 Score=162.10 Aligned_cols=218 Identities=18% Similarity=0.158 Sum_probs=166.4
Q ss_pred CCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cc-hhhhhccccCCEEeccCCccccc-CcccccCCcccEEeccC
Q 017525 17 LRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PL-LFEISKVVSLQHLDLSHSRIESL-PIEFKCLVNLKCLNLEY 92 (370)
Q Consensus 17 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~-~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~ 92 (370)
-++++.+++.++.+|.. ..++|++|+++++. .+ +..+..+++|++|++++|.++.+ |..++.+++|++|++++
T Consensus 13 ~~~~~c~~~~l~~ip~~---~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 13 KVTTSCPQQGLQAVPVG---IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp SCEEECCSSCCSSCCTT---CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CeEEEcCcCCcccCCcC---CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 36889998889988864 35799999999998 44 45688999999999999999876 56788999999999999
Q ss_pred cccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCCccc
Q 017525 93 TYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVS 172 (370)
Q Consensus 93 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~ 172 (370)
|..++.++...+.++++|++|++++| .+..+ ....+..+++|+.|+++.+.+..+
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~-----------~~~~~~~l~~L~~L~l~~n~l~~~------------- 144 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRC-GLQEL-----------GPGLFRGLAALQYLYLQDNALQAL------------- 144 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTS-CCCCC-----------CTTTTTTCTTCCEEECCSSCCCCC-------------
T ss_pred CCCccccCHHHhcCCcCCCEEECCCC-cCCEE-----------CHhHhhCCcCCCEEECCCCccccc-------------
Confidence 96577775555899999999999999 66532 234566778888887776643211
Q ss_pred cCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEeccccccc--CcccCC
Q 017525 173 TPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHA--TWLFLA 250 (370)
Q Consensus 173 L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~l~~l 250 (370)
....+..+++|++|++++|.++.++...+ ..+++|++|++++|+++++ ..+..+
T Consensus 145 ---------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---------~~l~~L~~L~l~~n~l~~~~~~~~~~l 200 (285)
T 1ozn_A 145 ---------------PDDTFRDLGNLTHLFLHGNRISSVPERAF---------RGLHSLDRLLLHQNRVAHVHPHAFRDL 200 (285)
T ss_dssp ---------------CTTTTTTCTTCCEEECCSSCCCEECTTTT---------TTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred ---------------CHhHhccCCCccEEECCCCcccccCHHHh---------cCccccCEEECCCCcccccCHhHccCc
Confidence 01246677889999999998887765433 5678999999999977765 457788
Q ss_pred CCccEEeeccCcchHHhhhccccCCCcccccCCcccccccccccccccc
Q 017525 251 PNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELK 299 (370)
Q Consensus 251 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 299 (370)
++|+.|++++|.... +. +..+..+++|+.|++++++
T Consensus 201 ~~L~~L~l~~n~l~~-~~------------~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 201 GRLMTLYLFANNLSA-LP------------TEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TTCCEEECCSSCCSC-CC------------HHHHTTCTTCCEEECCSSC
T ss_pred ccccEeeCCCCcCCc-CC------------HHHcccCcccCEEeccCCC
Confidence 999999999886432 21 1246678888888888764
No 65
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.83 E-value=6.8e-20 Score=161.26 Aligned_cols=213 Identities=19% Similarity=0.160 Sum_probs=156.7
Q ss_pred cccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--c-chhhhhccccCCEEeccCCcccccC-cc
Q 017525 3 NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--P-LLFEISKVVSLQHLDLSHSRIESLP-IE 78 (370)
Q Consensus 3 n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~-~~~~~~~l~~L~~L~l~~~~l~~lp-~~ 78 (370)
.+++.+|.. -.++|+.|++++|.++.++...+.++++|++|++++|. . .+..+..+++|++|++++|.++.++ ..
T Consensus 17 ~~l~~ip~~-l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (276)
T 2z62_A 17 LNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 95 (276)
T ss_dssp SCCSSCCSS-SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred CCccccCCC-CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhh
Confidence 345666664 23679999999999998887668899999999999998 3 3457888999999999999998766 46
Q ss_pred cccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhh
Q 017525 79 FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHA 158 (370)
Q Consensus 79 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~ 158 (370)
+..+++|++|++++| .+..++...++++++|++|++++| .+..+ ..+..+..+++|+.|++++|.+..
T Consensus 96 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~----------~l~~~~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 96 FSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHN-LIQSF----------KLPEYFSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp TTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSS-CCCCC----------CCCGGGGGCTTCCEEECCSSCCCE
T ss_pred hcCCccccEEECCCC-CccccCchhcccCCCCCEEECcCC-cccee----------cCchhhccCCCCCEEECCCCCCCc
Confidence 888999999999998 455555544889999999999999 66531 134566778888888888775432
Q ss_pred hHhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCc-EEEEecCCcccceeccCCCccccccccccccCcEEEEe
Q 017525 159 FQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQ-TLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYIS 237 (370)
Q Consensus 159 ~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 237 (370)
+.. ..+..+..++.|. .|++++|.++.++...+ ...+|++|+++
T Consensus 164 ~~~-------------------------~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~----------~~~~L~~L~L~ 208 (276)
T 2z62_A 164 IYC-------------------------TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF----------KEIRLKELALD 208 (276)
T ss_dssp ECG-------------------------GGGHHHHTCTTCCEEEECCSSCCCEECTTSS----------CSCCEEEEECC
T ss_pred CCH-------------------------HHhhhhhhccccceeeecCCCcccccCcccc----------CCCcccEEECC
Confidence 210 0011222333343 78899998887765443 23489999999
Q ss_pred cccccccCc--ccCCCCccEEeeccCcc
Q 017525 238 RSKFRHATW--LFLAPNLKRVEIDNCQD 263 (370)
Q Consensus 238 ~~~l~~~~~--l~~l~~L~~L~L~~~~~ 263 (370)
+|+++.++. +..+++|+.|++++|+.
T Consensus 209 ~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 209 TNQLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp SSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred CCceeecCHhHhcccccccEEEccCCcc
Confidence 998887653 56789999999998763
No 66
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.83 E-value=1.3e-19 Score=159.20 Aligned_cols=222 Identities=16% Similarity=0.151 Sum_probs=128.7
Q ss_pred CCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC-cchhhhhccccCCEEeccCCcccccCcccccCCcccEEeccCc
Q 017525 15 PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN-PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYT 93 (370)
Q Consensus 15 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~ 93 (370)
..+..+++..+.+..... ...+++|+.|+++++. .....+..+++|++|++++|.++.++ .++.+++|++|++++|
T Consensus 19 ~~l~~l~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n 95 (272)
T 3rfs_A 19 AETIKANLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGN 95 (272)
T ss_dssp HHHHHHHHTCSCTTSEEC--HHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTS
T ss_pred HHHHHHHhcCcccccccc--cccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCC
Confidence 334444454444443322 3556666666666665 33334556666666666666665543 4556666666666666
Q ss_pred ccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCCcccc
Q 017525 94 YGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVST 173 (370)
Q Consensus 94 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~L 173 (370)
.+..++...+.++++|++|++++| .+..++ ...+..+++|+.|+++.|.+..++
T Consensus 96 -~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~-----------~~~~~~l~~L~~L~L~~n~l~~~~------------- 149 (272)
T 3rfs_A 96 -QLQSLPNGVFDKLTNLKELVLVEN-QLQSLP-----------DGVFDKLTNLTYLNLAHNQLQSLP------------- 149 (272)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECTTS-CCCCCC-----------TTTTTTCTTCCEEECCSSCCCCCC-------------
T ss_pred -ccCccChhHhcCCcCCCEEECCCC-cCCccC-----------HHHhccCCCCCEEECCCCccCccC-------------
Confidence 344444444566666666666666 444221 222444555555555544321100
Q ss_pred CcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccccccCc--ccCCC
Q 017525 174 PSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATW--LFLAP 251 (370)
Q Consensus 174 ~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--l~~l~ 251 (370)
...+..+++|++|++++|.++.++...+ ..+++|++|++++|++++++. +..++
T Consensus 150 ---------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~---------~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 205 (272)
T 3rfs_A 150 ---------------KGVFDKLTNLTELDLSYNQLQSLPEGVF---------DKLTQLKDLRLYQNQLKSVPDGVFDRLT 205 (272)
T ss_dssp ---------------TTTTTTCTTCCEEECCSSCCCCCCTTTT---------TTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred ---------------HHHhccCccCCEEECCCCCcCccCHHHh---------cCCccCCEEECCCCcCCccCHHHHhCCc
Confidence 0134566788888888888776654433 457888888888887777643 56788
Q ss_pred CccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccccccccCCCc
Q 017525 252 NLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSKAL 309 (370)
Q Consensus 252 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~~~ 309 (370)
+|+.|++++|.. .+.+|.|+.|.++.+.--..++...+
T Consensus 206 ~L~~L~l~~N~~--------------------~~~~~~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 206 SLQYIWLHDNPW--------------------DCTCPGIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp TCCEEECCSSCB--------------------CCCTTTTHHHHHHHHHTGGGBBCTTS
T ss_pred CCCEEEccCCCc--------------------cccCcHHHHHHHHHHhCCCcccCccc
Confidence 888888888752 34567788887776643344544433
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.83 E-value=1.2e-19 Score=176.18 Aligned_cols=250 Identities=17% Similarity=0.137 Sum_probs=194.1
Q ss_pred CCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccccCCcccEEeccC
Q 017525 15 PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEY 92 (370)
Q Consensus 15 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~ 92 (370)
.++++|+++++.++.+|..+ . ++|++|++++|. .+|. .+++|++|++++|.++.+|. .+++|++|++++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l-~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCL-P--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFS 110 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCC-C--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECS
T ss_pred CCCcEEEecCCCcCccChhh-C--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcC
Confidence 46899999999999998863 2 899999999998 6665 57899999999999999987 789999999999
Q ss_pred cccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCCccc
Q 017525 93 TYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVS 172 (370)
Q Consensus 93 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~ 172 (370)
| .+..+|. .+++|+.|++++| .+..++ . .+++|+.|+++.|.+..++.. .. +
T Consensus 111 N-~l~~l~~----~l~~L~~L~L~~N-~l~~lp---------~------~l~~L~~L~Ls~N~l~~l~~~------~~-~ 162 (622)
T 3g06_A 111 N-PLTHLPA----LPSGLCKLWIFGN-QLTSLP---------V------LPPGLQELSVSDNQLASLPAL------PS-E 162 (622)
T ss_dssp C-CCCCCCC----CCTTCCEEECCSS-CCSCCC---------C------CCTTCCEEECCSSCCSCCCCC------CT-T
T ss_pred C-cCCCCCC----CCCCcCEEECCCC-CCCcCC---------C------CCCCCCEEECcCCcCCCcCCc------cC-C
Confidence 8 5666665 5788999999999 777544 1 238899999999987665431 11 4
Q ss_pred cCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccccccCcccCCCC
Q 017525 173 TPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATWLFLAPN 252 (370)
Q Consensus 173 L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~l~~l~~ 252 (370)
|+.|.+.++.-.. . + ..+++|+.|++++|.++.++ ..+++|+.|++++|+++.++. .+++
T Consensus 163 L~~L~L~~N~l~~-l--~--~~~~~L~~L~Ls~N~l~~l~-------------~~~~~L~~L~L~~N~l~~l~~--~~~~ 222 (622)
T 3g06_A 163 LCKLWAYNNQLTS-L--P--MLPSGLQELSVSDNQLASLP-------------TLPSELYKLWAYNNRLTSLPA--LPSG 222 (622)
T ss_dssp CCEEECCSSCCSC-C--C--CCCTTCCEEECCSSCCSCCC-------------CCCTTCCEEECCSSCCSSCCC--CCTT
T ss_pred CCEEECCCCCCCC-C--c--ccCCCCcEEECCCCCCCCCC-------------CccchhhEEECcCCcccccCC--CCCC
Confidence 7777776654322 2 1 44689999999999998764 346899999999998888764 3689
Q ss_pred ccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccccccccCCCccCCCcceEeecCCCCCCCCCCCC
Q 017525 253 LKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSKALPFPHLKEMSVDRCPLLKKLPLDC 332 (370)
Q Consensus 253 L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~L~~l~~~~ 332 (370)
|+.|++++|.. +.+ + ..+++|+.|+++++ .++.++. .+++|+.|++++| +++.+|...
T Consensus 223 L~~L~Ls~N~L-~~l-------------p---~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~l 280 (622)
T 3g06_A 223 LKELIVSGNRL-TSL-------------P---VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRN-QLTRLPESL 280 (622)
T ss_dssp CCEEECCSSCC-SCC-------------C---CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCCSCCGGG
T ss_pred CCEEEccCCcc-CcC-------------C---CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCC-CCCcCCHHH
Confidence 99999999864 212 1 46689999999998 6777765 5789999999987 688888655
Q ss_pred CCCCcceeEEec
Q 017525 333 NRGLERKIVIKG 344 (370)
Q Consensus 333 ~~~~~~~~~~~~ 344 (370)
... ..+..+..
T Consensus 281 ~~l-~~L~~L~L 291 (622)
T 3g06_A 281 IHL-SSETTVNL 291 (622)
T ss_dssp GGS-CTTCEEEC
T ss_pred hhc-cccCEEEe
Confidence 444 34454443
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.82 E-value=5.5e-21 Score=171.32 Aligned_cols=247 Identities=18% Similarity=0.168 Sum_probs=166.0
Q ss_pred HhcCCCCcEEEccCCC-cchhhhhccccCCEEeccCCccc--ccCcccc-------cCCcccEEeccCcccccccCcccc
Q 017525 35 FQSMASLRVLKWSYSN-PLLFEISKVVSLQHLDLSHSRIE--SLPIEFK-------CLVNLKCLNLEYTYGISRIPPKVI 104 (370)
Q Consensus 35 ~~~l~~L~~L~l~~~~-~~~~~~~~l~~L~~L~l~~~~l~--~lp~~~~-------~l~~L~~L~l~~~~~~~~~~~~~~ 104 (370)
++..++|++|+++++. .+|..+... |++|++++|.++ .+|..+. .+++|++|++++|...+.+|...+
T Consensus 39 ~~~~~~L~~l~l~~n~l~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTEADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEEEECTTHHHHCCTTCCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred EccCCCceeEeecccccccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 5667888999999888 777766554 899999999885 4565554 799999999999966667777632
Q ss_pred -cCCCCCcEEEccccCCCcccccccccCCcchhhhhcccC--CCccEEEEEecchhhhHhhhcCCCCCccccCcEEecCc
Q 017525 105 -SNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGL--EHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHF 181 (370)
Q Consensus 105 -~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l--~~L~~l~l~~~~~~~~~~~~~~~~~~~l~L~~l~l~~~ 181 (370)
.++++|++|++++| .+...+ ..+..+... ++|+.|++++|.+..+..- ....+. +|+.++++++
T Consensus 117 ~~~l~~L~~L~Ls~N-~l~~~~---------~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~-~~~~l~--~L~~L~Ls~N 183 (312)
T 1wwl_A 117 EATGPDLNILNLRNV-SWATRD---------AWLAELQQWLKPGLKVLSIAQAHSLNFSCE-QVRVFP--ALSTLDLSDN 183 (312)
T ss_dssp SCCSCCCSEEEEESC-BCSSSS---------SHHHHHHTTCCTTCCEEEEESCSCCCCCTT-TCCCCS--SCCEEECCSC
T ss_pred HhcCCCccEEEccCC-CCcchh---------HHHHHHHHhhcCCCcEEEeeCCCCccchHH-HhccCC--CCCEEECCCC
Confidence 89999999999999 776332 233333222 8999999999987654311 111222 3777777766
Q ss_pred CCCCccc-ccc--ccccCCCcEEEEecCCccccee---ccCCCccccccccccccCcEEEEeccccccc---CcccCCCC
Q 017525 182 NNSKSLG-VFS--LASLRHLQTLQLTYNDLDEIKI---DNGGEVKRVLEISGFHSLKNVYISRSKFRHA---TWLFLAPN 252 (370)
Q Consensus 182 ~~~~~~~-~~~--l~~l~~L~~L~l~~~~l~~~~~---~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~---~~l~~l~~ 252 (370)
.-..... ... +..+++|++|++++|.++.++. ..+ ..+++|++|++++|++++. +.+..+++
T Consensus 184 ~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~---------~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 254 (312)
T 1wwl_A 184 PELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA---------AARVQLQGLDLSHNSLRDAAGAPSCDWPSQ 254 (312)
T ss_dssp TTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHH---------HTTCCCSEEECTTSCCCSSCCCSCCCCCTT
T ss_pred CcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHH---------hcCCCCCEEECCCCcCCcccchhhhhhcCC
Confidence 5332211 112 2677788888888887774421 111 3457888888888877663 23445678
Q ss_pred ccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccccccccCCCccCCCcceEeecCCC
Q 017525 253 LKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSKALPFPHLKEMSVDRCP 323 (370)
Q Consensus 253 L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~ 323 (370)
|+.|++++|... .+ +..+. ++|+.|+++++ .++.++. ...+++|+.|++++++
T Consensus 255 L~~L~Ls~N~l~-~i-------------p~~~~--~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 255 LNSLNLSFTGLK-QV-------------PKGLP--AKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCEEECTTSCCS-SC-------------CSSCC--SEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCT
T ss_pred CCEEECCCCccC-hh-------------hhhcc--CCceEEECCCC-CCCCChh-HhhCCCCCEEeccCCC
Confidence 888888887643 22 22333 78888888877 5666643 5567778888777653
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.81 E-value=1.5e-19 Score=171.72 Aligned_cols=186 Identities=17% Similarity=0.134 Sum_probs=113.6
Q ss_pred CCCCcEEEccCCC---cchhhhhccccCCEEeccCCcccccCcccccCCcccEEeccCcccccccCcccccCCCCCcEEE
Q 017525 38 MASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLR 114 (370)
Q Consensus 38 l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 114 (370)
+++|++|++++|. ..|..+..+++|++|++++|.++..++ ++.+++|++|++++| .+..++ ..++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-----~~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELL-----VGPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSS-EEEEEE-----ECTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCC-cCCCCC-----CCCCcCEEE
Confidence 3489999999998 445788999999999999999886654 889999999999998 455443 348899999
Q ss_pred ccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHh--hhcCCCCCccccCcEEecCcCCCCccccccc
Q 017525 115 MYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQR--LLGSCMPQYVSTPSLCLSHFNNSKSLGVFSL 192 (370)
Q Consensus 115 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~--~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l 192 (370)
+++| .+..++ ...+++|+.|+++.|.+..... +.... +|+.|+++++.-.. .....+
T Consensus 106 L~~N-~l~~~~--------------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-----~L~~L~Ls~N~l~~-~~~~~l 164 (487)
T 3oja_A 106 AANN-NISRVS--------------CSRGQGKKNIYLANNKITMLRDLDEGCRS-----RVQYLDLKLNEIDT-VNFAEL 164 (487)
T ss_dssp CCSS-CCCCEE--------------ECCCSSCEEEECCSSCCCSGGGBCGGGGS-----SEEEEECTTSCCCE-EEGGGG
T ss_pred CcCC-cCCCCC--------------ccccCCCCEEECCCCCCCCCCchhhcCCC-----CCCEEECCCCCCCC-cChHHH
Confidence 9999 776432 1235778888888776554321 11111 24444444432211 111222
Q ss_pred c-ccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEeccccccc-CcccCCCCccEEeeccCc
Q 017525 193 A-SLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHA-TWLFLAPNLKRVEIDNCQ 262 (370)
Q Consensus 193 ~-~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~l~~l~~L~~L~L~~~~ 262 (370)
. .+++|+.|++++|.++.++.. ..+++|++|++++|+++++ +.+..+++|+.|+|++|.
T Consensus 165 ~~~l~~L~~L~Ls~N~l~~~~~~-----------~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~ 225 (487)
T 3oja_A 165 AASSDTLEHLNLQYNFIYDVKGQ-----------VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK 225 (487)
T ss_dssp GGGTTTCCEEECTTSCCCEEECC-----------CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC
T ss_pred hhhCCcccEEecCCCcccccccc-----------ccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCc
Confidence 2 445555555555555544211 2345555555555555443 234445555555555554
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.80 E-value=7.7e-19 Score=153.98 Aligned_cols=196 Identities=19% Similarity=0.236 Sum_probs=150.4
Q ss_pred CCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cch-hhhhccccCCEEeccCCcccccCcc-cccCCcccEEec
Q 017525 15 PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLL-FEISKVVSLQHLDLSHSRIESLPIE-FKCLVNLKCLNL 90 (370)
Q Consensus 15 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l 90 (370)
...+.++++++.++.+|..+ .+++++|+++++. .++ ..+..+++|++|++++|.++.+|.. +..+++|++|++
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCCCCccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 46789999999999888752 2689999999998 444 4788899999999999999888875 478999999999
Q ss_pred cCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCCc
Q 017525 91 EYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQY 170 (370)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~ 170 (370)
++| .+..++...+.++++|++|++++| .+..++ ...+..+++|+.|+++++.+..++
T Consensus 93 ~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~-----------~~~~~~l~~L~~L~Ls~n~l~~~~---------- 149 (270)
T 2o6q_A 93 TDN-KLQALPIGVFDQLVNLAELRLDRN-QLKSLP-----------PRVFDSLTKLTYLSLGYNELQSLP---------- 149 (270)
T ss_dssp CSS-CCCCCCTTTTTTCSSCCEEECCSS-CCCCCC-----------TTTTTTCTTCCEEECCSSCCCCCC----------
T ss_pred CCC-cCCcCCHhHcccccCCCEEECCCC-ccCeeC-----------HHHhCcCcCCCEEECCCCcCCccC----------
Confidence 998 566777666889999999999998 665332 334567778888877766432110
Q ss_pred cccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccccccCc--cc
Q 017525 171 VSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATW--LF 248 (370)
Q Consensus 171 l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--l~ 248 (370)
...+..+++|++|++++|.++.++...+ ..+++|++|++++|+++.++. +.
T Consensus 150 ------------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~---------~~l~~L~~L~L~~N~l~~~~~~~~~ 202 (270)
T 2o6q_A 150 ------------------KGVFDKLTSLKELRLYNNQLKRVPEGAF---------DKLTELKTLKLDNNQLKRVPEGAFD 202 (270)
T ss_dssp ------------------TTTTTTCTTCCEEECCSSCCSCCCTTTT---------TTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred ------------------HhHccCCcccceeEecCCcCcEeChhHh---------ccCCCcCEEECCCCcCCcCCHHHhc
Confidence 1135667889999999988887765433 467889999999998877653 66
Q ss_pred CCCCccEEeeccCcc
Q 017525 249 LAPNLKRVEIDNCQD 263 (370)
Q Consensus 249 ~l~~L~~L~L~~~~~ 263 (370)
.+++|+.|++++|+.
T Consensus 203 ~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 203 SLEKLKMLQLQENPW 217 (270)
T ss_dssp TCTTCCEEECCSSCB
T ss_pred cccCCCEEEecCCCe
Confidence 788999999988763
No 71
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.80 E-value=8.6e-19 Score=155.17 Aligned_cols=197 Identities=17% Similarity=0.162 Sum_probs=157.0
Q ss_pred CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCcccccCcccccCCcccEE
Q 017525 12 PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCL 88 (370)
Q Consensus 12 ~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L 88 (370)
.++++++.++++++.++.+|..+ .+++++|++++|. ..+..+..+++|++|++++|.++.++.. +.+++|+.|
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEE
T ss_pred cccCCccEEECCCCCCCcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEE
Confidence 57888999999999999998763 3789999999998 4467789999999999999999887764 789999999
Q ss_pred eccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCC
Q 017525 89 NLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMP 168 (370)
Q Consensus 89 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~ 168 (370)
++++| .+..+|.. +.++++|++|++++| .++.++ ...+..+++|+.|+++.|.+..++
T Consensus 83 ~Ls~N-~l~~l~~~-~~~l~~L~~L~l~~N-~l~~l~-----------~~~~~~l~~L~~L~L~~N~l~~~~-------- 140 (290)
T 1p9a_G 83 DLSHN-QLQSLPLL-GQTLPALTVLDVSFN-RLTSLP-----------LGALRGLGELQELYLKGNELKTLP-------- 140 (290)
T ss_dssp ECCSS-CCSSCCCC-TTTCTTCCEEECCSS-CCCCCC-----------SSTTTTCTTCCEEECTTSCCCCCC--------
T ss_pred ECCCC-cCCcCchh-hccCCCCCEEECCCC-cCcccC-----------HHHHcCCCCCCEEECCCCCCCccC--------
Confidence 99998 66778875 889999999999999 776432 345677788888877766532210
Q ss_pred CccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccccccC-cc
Q 017525 169 QYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHAT-WL 247 (370)
Q Consensus 169 ~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~l 247 (370)
...+..+++|+.|++++|.++.++...+ ..+++|++|++++|+++.++ .+
T Consensus 141 --------------------~~~~~~l~~L~~L~L~~N~l~~l~~~~~---------~~l~~L~~L~L~~N~l~~ip~~~ 191 (290)
T 1p9a_G 141 --------------------PGLLTPTPKLEKLSLANNNLTELPAGLL---------NGLENLDTLLLQENSLYTIPKGF 191 (290)
T ss_dssp --------------------TTTTTTCTTCCEEECTTSCCSCCCTTTT---------TTCTTCCEEECCSSCCCCCCTTT
T ss_pred --------------------hhhcccccCCCEEECCCCcCCccCHHHh---------cCcCCCCEEECCCCcCCccChhh
Confidence 1245677899999999999998876544 56889999999999888765 46
Q ss_pred cCCCCccEEeeccCcc
Q 017525 248 FLAPNLKRVEIDNCQD 263 (370)
Q Consensus 248 ~~l~~L~~L~L~~~~~ 263 (370)
...++|+.|+|++|+.
T Consensus 192 ~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 192 FGSHLLPFAFLHGNPW 207 (290)
T ss_dssp TTTCCCSEEECCSCCB
T ss_pred cccccCCeEEeCCCCc
Confidence 6678899999998764
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.79 E-value=2.3e-18 Score=151.00 Aligned_cols=190 Identities=22% Similarity=0.307 Sum_probs=151.8
Q ss_pred CcccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhh-hhccccCCEEeccCCcccccCc-
Q 017525 2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFE-ISKVVSLQHLDLSHSRIESLPI- 77 (370)
Q Consensus 2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~-~~~l~~L~~L~l~~~~l~~lp~- 77 (370)
++.++.+|.. -.++++.|++++|.++.++...+.++++|++|++++|. .++.. +..+++|++|++++|.++.+|.
T Consensus 25 ~~~l~~ip~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~ 103 (270)
T 2o6q_A 25 SKKLTAIPSN-IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIG 103 (270)
T ss_dssp TSCCSSCCSC-CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTT
T ss_pred CCCCCccCCC-CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHh
Confidence 4567777764 23789999999999999988778999999999999998 55544 5789999999999999998876
Q ss_pred ccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchh
Q 017525 78 EFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFH 157 (370)
Q Consensus 78 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~ 157 (370)
.+..+++|+.|++++| .+..++...+.++++|++|++++| .+..++ ...+..+++|+.|+++.+.+.
T Consensus 104 ~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~-----------~~~~~~l~~L~~L~L~~n~l~ 170 (270)
T 2o6q_A 104 VFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYN-ELQSLP-----------KGVFDKLTSLKELRLYNNQLK 170 (270)
T ss_dssp TTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCC-----------TTTTTTCTTCCEEECCSSCCS
T ss_pred HcccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCC-cCCccC-----------HhHccCCcccceeEecCCcCc
Confidence 4688999999999998 566676666899999999999999 776433 334667788888888776432
Q ss_pred hhHhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEe
Q 017525 158 AFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYIS 237 (370)
Q Consensus 158 ~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 237 (370)
.++ ...+..+++|++|++++|.++.++...+ ..+++|++|+++
T Consensus 171 ~~~----------------------------~~~~~~l~~L~~L~L~~N~l~~~~~~~~---------~~l~~L~~L~l~ 213 (270)
T 2o6q_A 171 RVP----------------------------EGAFDKLTELKTLKLDNNQLKRVPEGAF---------DSLEKLKMLQLQ 213 (270)
T ss_dssp CCC----------------------------TTTTTTCTTCCEEECCSSCCSCCCTTTT---------TTCTTCCEEECC
T ss_pred EeC----------------------------hhHhccCCCcCEEECCCCcCCcCCHHHh---------ccccCCCEEEec
Confidence 210 1246678899999999999998876543 568999999999
Q ss_pred ccccc
Q 017525 238 RSKFR 242 (370)
Q Consensus 238 ~~~l~ 242 (370)
+|.+.
T Consensus 214 ~N~~~ 218 (270)
T 2o6q_A 214 ENPWD 218 (270)
T ss_dssp SSCBC
T ss_pred CCCee
Confidence 98553
No 73
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.78 E-value=6.3e-20 Score=173.34 Aligned_cols=293 Identities=19% Similarity=0.170 Sum_probs=155.0
Q ss_pred CCCCCCCEEecCCCcCCCC-ChHHHhcCC----CCcEEEccCCC-c------chhhhhccccCCEEeccCCccccc-Cc-
Q 017525 12 PVCPRLRTLFLSSNIFHRV-NSDFFQSMA----SLRVLKWSYSN-P------LLFEISKVVSLQHLDLSHSRIESL-PI- 77 (370)
Q Consensus 12 ~~l~~L~~L~l~~~~i~~~-~~~~~~~l~----~L~~L~l~~~~-~------~~~~~~~l~~L~~L~l~~~~l~~l-p~- 77 (370)
..+++|++|++++|.++.. +..++..++ +|++|++++|. . ++..+..+++|++|++++|.++.. +.
T Consensus 53 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 132 (461)
T 1z7x_W 53 RVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQL 132 (461)
T ss_dssp HTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHH
T ss_pred HhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHH
Confidence 4456666666666665532 222233444 46666666665 1 245556666666666666655311 11
Q ss_pred ---c-cccCCcccEEeccCcccccc----cCcccccCCCCCcEEEccccCCCccccccc---------------------
Q 017525 78 ---E-FKCLVNLKCLNLEYTYGISR----IPPKVISNLKILETLRMYECAALPQARDSI--------------------- 128 (370)
Q Consensus 78 ---~-~~~l~~L~~L~l~~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--------------------- 128 (370)
. ....++|++|++++|..... ++. .+..+++|++|++++| .++......
T Consensus 133 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 210 (461)
T 1z7x_W 133 LCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS-VLRAKPDFKELTVSNN-DINEAGVRVLCQGLKDSPCQLEALKLESCG 210 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH-HHHHCTTCCEEECCSS-BCHHHHHHHHHHHHHHSCCCCCEEECTTSC
T ss_pred HHHHHhcCCCcceEEECCCCCCCHHHHHHHHH-HHhhCCCCCEEECcCC-CcchHHHHHHHHHHhcCCCCceEEEccCCC
Confidence 1 11234455555555522111 111 1334455555555554 332110000
Q ss_pred -ccCCcchhhhhcccCCCccEEEEEecchhhhH--hhhc--CCCCCccccCcEEecCcCCCCcccc----ccccccCCCc
Q 017525 129 -LFGDCRVLVEELLGLEHLSVFTITLNNFHAFQ--RLLG--SCMPQYVSTPSLCLSHFNNSKSLGV----FSLASLRHLQ 199 (370)
Q Consensus 129 -~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~--~~~~--~~~~~~l~L~~l~l~~~~~~~~~~~----~~l~~l~~L~ 199 (370)
...........+..+++|+.++++++.+.... .+.. ..... .++.+++.++ .++..+. ..+..+++|+
T Consensus 211 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~--~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~ 287 (461)
T 1z7x_W 211 VTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSS--RLRTLWIWEC-GITAKGCGDLCRVLRAKESLK 287 (461)
T ss_dssp CBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTC--CCCEEECTTS-CCCHHHHHHHHHHHHHCTTCC
T ss_pred CcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCC--CceEEECcCC-CCCHHHHHHHHHHHhhCCCcc
Confidence 00000013444556778888888887654421 1111 00111 4777888776 3333221 2355578888
Q ss_pred EEEEecCCcccceeccCCCccccccccccccCcEEEEeccccccc------CcccCCCCccEEeeccCcchHHhhhcccc
Q 017525 200 TLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHA------TWLFLAPNLKRVEIDNCQDMKEIIDSEKF 273 (370)
Q Consensus 200 ~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~------~~l~~l~~L~~L~L~~~~~~~~~~~~~~~ 273 (370)
+|++++|.+++.+...++.... ...++|++|++++|.+++. .++..+++|++|++++|........ .
T Consensus 288 ~L~Ls~n~i~~~~~~~l~~~l~----~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~-~-- 360 (461)
T 1z7x_W 288 ELSLAGNELGDEGARLLCETLL----EPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR-E-- 360 (461)
T ss_dssp EEECTTCCCHHHHHHHHHHHHT----STTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH-H--
T ss_pred eEECCCCCCchHHHHHHHHHhc----cCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH-H--
Confidence 8888888876554322211000 2346899999999877653 2345678999999999864332211 0
Q ss_pred CCCcccccCCcc-ccccccccccccccccc-----cccCCCccCCCcceEeecCCC
Q 017525 274 GEVPAEVMANLI-PFARLERLILEELKNLK-----TVHSKALPFPHLKEMSVDRCP 323 (370)
Q Consensus 274 ~~~~~~~~~~~~-~~p~L~~L~l~~~~~l~-----~i~~~~~~~~~L~~L~l~~c~ 323 (370)
+...+. ..++|+.|++++| .++ .++.....+++|++|++++|+
T Consensus 361 ------l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 361 ------LCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp ------HHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred ------HHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 001111 2678999999988 455 343334458899999998873
No 74
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.78 E-value=6.6e-19 Score=151.55 Aligned_cols=202 Identities=17% Similarity=0.220 Sum_probs=128.4
Q ss_pred CCCCChHHHhcCCCCcEEEccCCC--cch-hhhhccccCCEEeccCCc-ccccCc-ccccCCcccEEeccCcccccccCc
Q 017525 27 FHRVNSDFFQSMASLRVLKWSYSN--PLL-FEISKVVSLQHLDLSHSR-IESLPI-EFKCLVNLKCLNLEYTYGISRIPP 101 (370)
Q Consensus 27 i~~~~~~~~~~l~~L~~L~l~~~~--~~~-~~~~~l~~L~~L~l~~~~-l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~ 101 (370)
++.+|. + -++|++|+++++. .+| ..+.++++|++|++++|. ++.++. .+..+++|++|++++|..+..++.
T Consensus 23 l~~ip~--~--~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 23 IQRIPS--L--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp CSSCCC--C--CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred ccccCC--C--CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 555554 1 2267777777776 333 356677778888888775 776665 567778888888877225666665
Q ss_pred ccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCcc---EEEEEec-chhhhHhhhcCCCCCccccCcEE
Q 017525 102 KVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLS---VFTITLN-NFHAFQRLLGSCMPQYVSTPSLC 177 (370)
Q Consensus 102 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~---~l~l~~~-~~~~~~~~~~~~~~~~l~L~~l~ 177 (370)
..+.++++|++|++++| .+..++ . +..+++|+ .++++.+ .+..++
T Consensus 99 ~~f~~l~~L~~L~l~~n-~l~~lp---------~----~~~l~~L~~L~~L~l~~N~~l~~i~----------------- 147 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNT-GLKMFP---------D----LTKVYSTDIFFILEITDNPYMTSIP----------------- 147 (239)
T ss_dssp TSEECCTTCCEEEEEEE-CCCSCC---------C----CTTCCBCCSEEEEEEESCTTCCEEC-----------------
T ss_pred HHhCCCCCCCEEeCCCC-CCcccc---------c----cccccccccccEEECCCCcchhhcC-----------------
Confidence 55777888888888877 665333 1 34444454 7777766 322110
Q ss_pred ecCcCCCCccccccccccCCCc-EEEEecCCcccceeccCCCccccccccccccCcEEEEecc-cccccC--cccCC-CC
Q 017525 178 LSHFNNSKSLGVFSLASLRHLQ-TLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRS-KFRHAT--WLFLA-PN 252 (370)
Q Consensus 178 l~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~--~l~~l-~~ 252 (370)
...+..+++|+ .|++++|.++.++...+ .. ++|++|++++| .++.++ .+..+ ++
T Consensus 148 -----------~~~~~~l~~L~~~L~l~~n~l~~i~~~~~---------~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~ 206 (239)
T 2xwt_C 148 -----------VNAFQGLCNETLTLKLYNNGFTSVQGYAF---------NG-TKLDAVYLNKNKYLTVIDKDAFGGVYSG 206 (239)
T ss_dssp -----------TTTTTTTBSSEEEEECCSCCCCEECTTTT---------TT-CEEEEEECTTCTTCCEECTTTTTTCSBC
T ss_pred -----------cccccchhcceeEEEcCCCCCcccCHhhc---------CC-CCCCEEEcCCCCCcccCCHHHhhccccC
Confidence 11355667788 88888888776654432 22 67888888888 477663 35667 78
Q ss_pred ccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccc
Q 017525 253 LKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKN 300 (370)
Q Consensus 253 L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~ 300 (370)
|+.|++++|.. +.+ ....+++|+.|.++++..
T Consensus 207 L~~L~l~~N~l-~~l---------------~~~~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 207 PSLLDVSQTSV-TAL---------------PSKGLEHLKELIARNTWT 238 (239)
T ss_dssp CSEEECTTCCC-CCC---------------CCTTCTTCSEEECTTC--
T ss_pred CcEEECCCCcc-ccC---------------ChhHhccCceeeccCccC
Confidence 88888888764 222 112677888888877654
No 75
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.78 E-value=1.5e-18 Score=158.00 Aligned_cols=232 Identities=13% Similarity=0.104 Sum_probs=172.2
Q ss_pred CcccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cch-hhhhccccCCE-EeccCCcccccC
Q 017525 2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLL-FEISKVVSLQH-LDLSHSRIESLP 76 (370)
Q Consensus 2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~-~~~~~l~~L~~-L~l~~~~l~~lp 76 (370)
+++++++|... .++++.|++++|.|+.+++..|.++++|++|++++|. .+| ..|.+++++++ +.+.+|+++.++
T Consensus 18 ~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~ 96 (350)
T 4ay9_X 18 ESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN 96 (350)
T ss_dssp STTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC
T ss_pred CCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccC
Confidence 35688888752 4689999999999999998778999999999999997 344 45678888775 556678888775
Q ss_pred c-ccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccC-CCccEEEEEec
Q 017525 77 I-EFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGL-EHLSVFTITLN 154 (370)
Q Consensus 77 ~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~l~l~~~ 154 (370)
. .+..+++|++|++++| .+..++...+....++..+++.++..+..++ ...+..+ ..++.++++.|
T Consensus 97 ~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~-----------~~~f~~~~~~l~~L~L~~N 164 (350)
T 4ay9_X 97 PEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIE-----------RNSFVGLSFESVILWLNKN 164 (350)
T ss_dssp TTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEEC-----------TTSSTTSBSSCEEEECCSS
T ss_pred chhhhhcccccccccccc-ccccCCchhhcccchhhhhhhcccccccccc-----------ccchhhcchhhhhhccccc
Confidence 4 6788999999999998 5666665446667778888887653555433 2233344 46778888888
Q ss_pred chhhhHhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEE
Q 017525 155 NFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNV 234 (370)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L 234 (370)
.+..++.... ....+..+.+.++..++......+..+++|++|++++|.++.++. ..+.+|+.|
T Consensus 165 ~i~~i~~~~f----~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~------------~~~~~L~~L 228 (350)
T 4ay9_X 165 GIQEIHNSAF----NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS------------YGLENLKKL 228 (350)
T ss_dssp CCCEECTTSS----TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS------------SSCTTCCEE
T ss_pred cccCCChhhc----cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh------------hhhccchHh
Confidence 8766543221 112577788877777666655567888999999999999888753 457888888
Q ss_pred EEecc-cccccCcccCCCCccEEeeccCc
Q 017525 235 YISRS-KFRHATWLFLAPNLKRVEIDNCQ 262 (370)
Q Consensus 235 ~l~~~-~l~~~~~l~~l~~L~~L~L~~~~ 262 (370)
.+.++ +++.++.+..+++|+.+++.+..
T Consensus 229 ~~l~~~~l~~lP~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 229 RARSTYNLKKLPTLEKLVALMEASLTYPS 257 (350)
T ss_dssp ECTTCTTCCCCCCTTTCCSCCEEECSCHH
T ss_pred hhccCCCcCcCCCchhCcChhhCcCCCCc
Confidence 88777 78888888889999999987643
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.77 E-value=3.1e-18 Score=151.63 Aligned_cols=188 Identities=22% Similarity=0.258 Sum_probs=152.6
Q ss_pred CcccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCccc
Q 017525 2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEF 79 (370)
Q Consensus 2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~ 79 (370)
++.++.+|.. -.++++.|++++|.++.+++..+.++++|++|++++|. .++. ...+++|++|++++|.++.+|..+
T Consensus 19 ~~~l~~ip~~-~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~l~~~~ 96 (290)
T 1p9a_G 19 KRNLTALPPD-LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQLQSLPLLG 96 (290)
T ss_dssp TSCCSSCCSC-CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSSCCSSCCCCT
T ss_pred CCCCCcCCCC-CCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-CCCCCcCCEEECCCCcCCcCchhh
Confidence 4678888875 24799999999999998877779999999999999999 4443 378999999999999999999989
Q ss_pred ccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhh
Q 017525 80 KCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAF 159 (370)
Q Consensus 80 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~ 159 (370)
..+++|+.|++++| .+..++...+.++++|++|++++| .+..++ ...+..+++|+.|+++.|.+..+
T Consensus 97 ~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~-----------~~~~~~l~~L~~L~L~~N~l~~l 163 (290)
T 1p9a_G 97 QTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGN-ELKTLP-----------PGLLTPTPKLEKLSLANNNLTEL 163 (290)
T ss_dssp TTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTS-CCCCCC-----------TTTTTTCTTCCEEECTTSCCSCC
T ss_pred ccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCC-CCCccC-----------hhhcccccCCCEEECCCCcCCcc
Confidence 99999999999999 667777666999999999999999 776433 34456778888888876653211
Q ss_pred HhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecc
Q 017525 160 QRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRS 239 (370)
Q Consensus 160 ~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 239 (370)
+ ...+..+++|+.|++++|.++.++..+ ...++|++|++.+|
T Consensus 164 ~----------------------------~~~~~~l~~L~~L~L~~N~l~~ip~~~----------~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 164 P----------------------------AGLLNGLENLDTLLLQENSLYTIPKGF----------FGSHLLPFAFLHGN 205 (290)
T ss_dssp C----------------------------TTTTTTCTTCCEEECCSSCCCCCCTTT----------TTTCCCSEEECCSC
T ss_pred C----------------------------HHHhcCcCCCCEEECCCCcCCccChhh----------cccccCCeEEeCCC
Confidence 1 124567889999999999999887655 34578999999998
Q ss_pred ccc
Q 017525 240 KFR 242 (370)
Q Consensus 240 ~l~ 242 (370)
.+.
T Consensus 206 p~~ 208 (290)
T 1p9a_G 206 PWL 208 (290)
T ss_dssp CBC
T ss_pred Ccc
Confidence 553
No 77
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=2.1e-18 Score=152.84 Aligned_cols=187 Identities=19% Similarity=0.246 Sum_probs=124.5
Q ss_pred CCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccccCCcccEEeccC
Q 017525 15 PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEY 92 (370)
Q Consensus 15 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~ 92 (370)
..+..+.+..+.+..+.. ...+++|++|++++|. .++ .+..+++|++|++++|.++.++. +..+++|+.|++++
T Consensus 24 ~~~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~ 99 (291)
T 1h6t_A 24 AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDE 99 (291)
T ss_dssp HHHHHHHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred HHHHHHHhcCCCcccccc--hhhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCC
Confidence 334444555555554433 3567777777777776 333 46677777777777777776665 67777777777777
Q ss_pred cccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCCccc
Q 017525 93 TYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVS 172 (370)
Q Consensus 93 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~ 172 (370)
| .+..++. +.++++|++|++++| .+.. +..+..+++|+.|+++.|.+..+
T Consensus 100 n-~l~~~~~--l~~l~~L~~L~L~~n-~i~~-------------~~~l~~l~~L~~L~l~~n~l~~~------------- 149 (291)
T 1h6t_A 100 N-KVKDLSS--LKDLKKLKSLSLEHN-GISD-------------INGLVHLPQLESLYLGNNKITDI------------- 149 (291)
T ss_dssp S-CCCCGGG--GTTCTTCCEEECTTS-CCCC-------------CGGGGGCTTCCEEECCSSCCCCC-------------
T ss_pred C-cCCCChh--hccCCCCCEEECCCC-cCCC-------------ChhhcCCCCCCEEEccCCcCCcc-------------
Confidence 7 4444443 677777777777777 5542 12355566666666665532211
Q ss_pred cCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccccccCcccCCCC
Q 017525 173 TPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATWLFLAPN 252 (370)
Q Consensus 173 L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~l~~l~~ 252 (370)
..+..+++|+.|++++|.++.++. + ..+++|++|++++|++++++.+..+++
T Consensus 150 -----------------~~l~~l~~L~~L~L~~N~l~~~~~-l----------~~l~~L~~L~L~~N~i~~l~~l~~l~~ 201 (291)
T 1h6t_A 150 -----------------TVLSRLTKLDTLSLEDNQISDIVP-L----------AGLTKLQNLYLSKNHISDLRALAGLKN 201 (291)
T ss_dssp -----------------GGGGGCTTCSEEECCSSCCCCCGG-G----------TTCTTCCEEECCSSCCCBCGGGTTCTT
T ss_pred -----------------hhhccCCCCCEEEccCCccccchh-h----------cCCCccCEEECCCCcCCCChhhccCCC
Confidence 135567788888888888777643 2 567888888888888888777788888
Q ss_pred ccEEeeccCcc
Q 017525 253 LKRVEIDNCQD 263 (370)
Q Consensus 253 L~~L~L~~~~~ 263 (370)
|+.|++++|..
T Consensus 202 L~~L~l~~n~i 212 (291)
T 1h6t_A 202 LDVLELFSQEC 212 (291)
T ss_dssp CSEEEEEEEEE
T ss_pred CCEEECcCCcc
Confidence 88888888764
No 78
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.77 E-value=1.3e-20 Score=178.14 Aligned_cols=237 Identities=17% Similarity=0.151 Sum_probs=153.1
Q ss_pred CCCCCCCEEecCCCcCCCCC----hHHHhcCCCCcEEEccCCC---cchhhh-hccc----cCCEEeccCCccc-----c
Q 017525 12 PVCPRLRTLFLSSNIFHRVN----SDFFQSMASLRVLKWSYSN---PLLFEI-SKVV----SLQHLDLSHSRIE-----S 74 (370)
Q Consensus 12 ~~l~~L~~L~l~~~~i~~~~----~~~~~~l~~L~~L~l~~~~---~~~~~~-~~l~----~L~~L~l~~~~l~-----~ 74 (370)
..+++|++|++++|.++... +..+..+++|++|++++|. ..+..+ ..++ +|++|++++|.++ .
T Consensus 25 ~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~ 104 (461)
T 1z7x_W 25 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV 104 (461)
T ss_dssp HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHH
Confidence 46789999999999877321 2336778999999999987 223333 3344 6999999999886 4
Q ss_pred cCcccccCCcccEEeccCcccccccC----cccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEE
Q 017525 75 LPIEFKCLVNLKCLNLEYTYGISRIP----PKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFT 150 (370)
Q Consensus 75 lp~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~ 150 (370)
++..+..+++|++|++++|......+ .......++|++|++++| .++... .......+..+++|+.|+
T Consensus 105 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~-------~~~l~~~l~~~~~L~~L~ 176 (461)
T 1z7x_W 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAAS-------CEPLASVLRAKPDFKELT 176 (461)
T ss_dssp HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGG-------HHHHHHHHHHCTTCCEEE
T ss_pred HHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHH-------HHHHHHHHhhCCCCCEEE
Confidence 56778889999999999985322111 111234668999999998 665311 112345566778999999
Q ss_pred EEecchhhh--HhhhcCC--CCCccccCcEEecCcCCCCccc----cccccccCCCcEEEEecCCcccceeccCCCcccc
Q 017525 151 ITLNNFHAF--QRLLGSC--MPQYVSTPSLCLSHFNNSKSLG----VFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRV 222 (370)
Q Consensus 151 l~~~~~~~~--~~~~~~~--~~~~l~L~~l~l~~~~~~~~~~----~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~ 222 (370)
++++.+... ..+.... ... .++.+.+.++.- +..+ ...+..+++|++|++++|.+++.+...+++...
T Consensus 177 L~~n~i~~~~~~~l~~~l~~~~~--~L~~L~L~~n~l-~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~- 252 (461)
T 1z7x_W 177 VSNNDINEAGVRVLCQGLKDSPC--QLEALKLESCGV-TSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLL- 252 (461)
T ss_dssp CCSSBCHHHHHHHHHHHHHHSCC--CCCEEECTTSCC-BTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHT-
T ss_pred CcCCCcchHHHHHHHHHHhcCCC--CceEEEccCCCC-cHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHh-
Confidence 999876542 2222100 011 477888877743 2221 124556789999999998877654322111000
Q ss_pred ccccccccCcEEEEecccccc-----c-CcccCCCCccEEeeccCcc
Q 017525 223 LEISGFHSLKNVYISRSKFRH-----A-TWLFLAPNLKRVEIDNCQD 263 (370)
Q Consensus 223 ~~~~~~~~L~~L~l~~~~l~~-----~-~~l~~l~~L~~L~L~~~~~ 263 (370)
..+++|++|++++|++++ + ..+..+++|++|++++|..
T Consensus 253 ---~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 296 (461)
T 1z7x_W 253 ---HPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL 296 (461)
T ss_dssp ---STTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCC
T ss_pred ---cCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCC
Confidence 246788888888886665 2 2344577888888887764
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.77 E-value=2.4e-19 Score=157.38 Aligned_cols=225 Identities=14% Similarity=0.083 Sum_probs=163.6
Q ss_pred CCCcEEEccCCC-cchhhhhccccCCEEeccCCcccccCcccccCCcccEEeccCcccccccCcccccCCCCCcEEEccc
Q 017525 39 ASLRVLKWSYSN-PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYE 117 (370)
Q Consensus 39 ~~L~~L~l~~~~-~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 117 (370)
..+..+.+..+. ........+++|+.|+++++.++.++ .+..+++|+.|++++| .+..++ .+.++++|++|++++
T Consensus 19 ~~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n-~l~~~~--~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 19 AETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGN-KLHDIS--ALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTS-CCCCCG--GGTTCTTCCEEECTT
T ss_pred HHHHHHHhcCcccccccccccccceeeeeeCCCCccccc-ccccCCCCcEEECCCC-CCCCch--hhcCCCCCCEEECCC
Confidence 344445555555 33345678899999999999998776 5789999999999999 455554 389999999999999
Q ss_pred cCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCCccccCcEEecCcCCCCccccccccccCC
Q 017525 118 CAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRH 197 (370)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~ 197 (370)
| .+..++ ...+..+++|+.|+++.|.+..+ ....+..+++
T Consensus 95 n-~l~~~~-----------~~~~~~l~~L~~L~L~~n~l~~~----------------------------~~~~~~~l~~ 134 (272)
T 3rfs_A 95 N-QLQSLP-----------NGVFDKLTNLKELVLVENQLQSL----------------------------PDGVFDKLTN 134 (272)
T ss_dssp S-CCCCCC-----------TTTTTTCTTCCEEECTTSCCCCC----------------------------CTTTTTTCTT
T ss_pred C-ccCccC-----------hhHhcCCcCCCEEECCCCcCCcc----------------------------CHHHhccCCC
Confidence 9 776432 33456778888887776643211 0124677889
Q ss_pred CcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccccccCc--ccCCCCccEEeeccCcchHHhhhccccCC
Q 017525 198 LQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATW--LFLAPNLKRVEIDNCQDMKEIIDSEKFGE 275 (370)
Q Consensus 198 L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--l~~l~~L~~L~L~~~~~~~~~~~~~~~~~ 275 (370)
|++|++++|.++.++...+ ..+++|++|++++|++++++. ++.+++|+.|++++|... .+.
T Consensus 135 L~~L~L~~n~l~~~~~~~~---------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~------- 197 (272)
T 3rfs_A 135 LTYLNLAHNQLQSLPKGVF---------DKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK-SVP------- 197 (272)
T ss_dssp CCEEECCSSCCCCCCTTTT---------TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCC-------
T ss_pred CCEEECCCCccCccCHHHh---------ccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC-ccC-------
Confidence 9999999999988765443 568999999999998888754 678999999999998743 221
Q ss_pred CcccccCCccccccccccccccccccccccCCCccCCCcceEeecCCCCCCCCCCCCCCCC
Q 017525 276 VPAEVMANLIPFARLERLILEELKNLKTVHSKALPFPHLKEMSVDRCPLLKKLPLDCNRGL 336 (370)
Q Consensus 276 ~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~ 336 (370)
+..+..+++|+.|++++++- .+.+|.|+.|.+..+.--..+|.......
T Consensus 198 -----~~~~~~l~~L~~L~l~~N~~-------~~~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 198 -----DGVFDRLTSLQYIWLHDNPW-------DCTCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp -----TTTTTTCTTCCEEECCSSCB-------CCCTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred -----HHHHhCCcCCCEEEccCCCc-------cccCcHHHHHHHHHHhCCCcccCcccccC
Confidence 23567889999999998842 13467788877766544445666554443
No 80
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.76 E-value=4e-18 Score=146.62 Aligned_cols=206 Identities=17% Similarity=0.210 Sum_probs=155.0
Q ss_pred cchhhhhccccCCEEeccCCcccccCc-ccccCCcccEEeccCcccccccCcccccCCCCCcEEEccc-cCCCccccccc
Q 017525 51 PLLFEISKVVSLQHLDLSHSRIESLPI-EFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYE-CAALPQARDSI 128 (370)
Q Consensus 51 ~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~ 128 (370)
.+|. +. .+|++|++++|+++.+|. .++.+++|+.|++++|..++.++...+.++++|++|++++ | .+..++
T Consensus 25 ~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n-~l~~i~--- 97 (239)
T 2xwt_C 25 RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR-NLTYID--- 97 (239)
T ss_dssp SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET-TCCEEC---
T ss_pred ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC-CeeEcC---
Confidence 5565 32 489999999999998877 6889999999999999557788876689999999999998 7 776432
Q ss_pred ccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCc---EEEEec
Q 017525 129 LFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQ---TLQLTY 205 (370)
Q Consensus 129 ~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~---~L~l~~ 205 (370)
...+..+++|+.++++++.+..++ .+..+++|+ +|++++
T Consensus 98 --------~~~f~~l~~L~~L~l~~n~l~~lp------------------------------~~~~l~~L~~L~~L~l~~ 139 (239)
T 2xwt_C 98 --------PDALKELPLLKFLGIFNTGLKMFP------------------------------DLTKVYSTDIFFILEITD 139 (239)
T ss_dssp --------TTSEECCTTCCEEEEEEECCCSCC------------------------------CCTTCCBCCSEEEEEEES
T ss_pred --------HHHhCCCCCCCEEeCCCCCCcccc------------------------------ccccccccccccEEECCC
Confidence 345677889999999887643321 123344454 999999
Q ss_pred C-CcccceeccCCCccccccccccccCc-EEEEecccccccCc-ccCCCCccEEeeccCcchHHhhhccccCCCcccccC
Q 017525 206 N-DLDEIKIDNGGEVKRVLEISGFHSLK-NVYISRSKFRHATW-LFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMA 282 (370)
Q Consensus 206 ~-~l~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~l~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~ 282 (370)
| .++.++...+ ..+++|+ +|++++|+++.++. ....++|+.|++++|..++.+. +.
T Consensus 140 N~~l~~i~~~~~---------~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~------------~~ 198 (239)
T 2xwt_C 140 NPYMTSIPVNAF---------QGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVID------------KD 198 (239)
T ss_dssp CTTCCEECTTTT---------TTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEEC------------TT
T ss_pred CcchhhcCcccc---------cchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCC------------HH
Confidence 9 8988876544 5689999 99999998877653 2234789999999996455442 23
Q ss_pred Ccccc-ccccccccccccccccccCCCccCCCcceEeecCCCCC
Q 017525 283 NLIPF-ARLERLILEELKNLKTVHSKALPFPHLKEMSVDRCPLL 325 (370)
Q Consensus 283 ~~~~~-p~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~L 325 (370)
.+..+ ++|+.|+++++ .++.++.. .+++|+.|.+.+++.|
T Consensus 199 ~~~~l~~~L~~L~l~~N-~l~~l~~~--~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 199 AFGGVYSGPSLLDVSQT-SVTALPSK--GLEHLKELIARNTWTL 239 (239)
T ss_dssp TTTTCSBCCSEEECTTC-CCCCCCCT--TCTTCSEEECTTC---
T ss_pred HhhccccCCcEEECCCC-ccccCChh--HhccCceeeccCccCC
Confidence 56777 99999999987 67777654 6999999999988754
No 81
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.76 E-value=1.5e-19 Score=166.93 Aligned_cols=95 Identities=12% Similarity=0.125 Sum_probs=59.1
Q ss_pred cccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEeccccccc------Ccc--cCCCCccEEeeccCc
Q 017525 191 SLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHA------TWL--FLAPNLKRVEIDNCQ 262 (370)
Q Consensus 191 ~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~------~~l--~~l~~L~~L~L~~~~ 262 (370)
.+..+++|++|++++|.+++.+....+. ....+++|++|+|++|++++. ..+ +.+++|+.|+|++|.
T Consensus 211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~-----~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 211 GLAYCQELKVLDLQDNTFTHLGSSALAI-----ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp TGGGCTTCCEEECCSSCCHHHHHHHHHH-----HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred HhhcCCCccEEECcCCCCCcHHHHHHHH-----HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 4667788888888888875321111000 005678888888888877653 233 337888888888887
Q ss_pred chHHhhhccccCCCcccccCCc-ccccccccccccccc
Q 017525 263 DMKEIIDSEKFGEVPAEVMANL-IPFARLERLILEELK 299 (370)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~-~~~p~L~~L~l~~~~ 299 (370)
....... .++..+ ..+|+|+.|++++|.
T Consensus 286 i~~~g~~---------~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 286 IELDAVR---------TLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp CBHHHHH---------HHHHHHHHHCTTCCEEECTTSB
T ss_pred CCHHHHH---------HHHHHHHhcCCCceEEEccCCc
Confidence 5442100 011233 457888888888873
No 82
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.75 E-value=7.1e-18 Score=148.30 Aligned_cols=192 Identities=23% Similarity=0.229 Sum_probs=146.3
Q ss_pred CcccccccCC--CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCcccccC
Q 017525 2 TNHIENLVES--PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESLP 76 (370)
Q Consensus 2 ~n~l~~l~~~--~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~lp 76 (370)
+|.++.++.. .++++|++|++++|.++.++...+.++++|++|++++|. ..+..+..+++|++|++++|.++.++
T Consensus 37 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 116 (276)
T 2z62_A 37 FNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116 (276)
T ss_dssp TCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCST
T ss_pred CCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccC
Confidence 5778888864 789999999999999998888768999999999999998 44567899999999999999998776
Q ss_pred c-ccccCCcccEEeccCcccccc--cCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCcc-EEEEE
Q 017525 77 I-EFKCLVNLKCLNLEYTYGISR--IPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLS-VFTIT 152 (370)
Q Consensus 77 ~-~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~-~l~l~ 152 (370)
. .++.+++|++|++++|. +.. +|.. +.++++|++|++++| .+..++ ...+..+..++.+. .++++
T Consensus 117 ~~~~~~l~~L~~L~l~~n~-l~~~~l~~~-~~~l~~L~~L~Ls~N-~l~~~~--------~~~~~~l~~L~~l~l~L~ls 185 (276)
T 2z62_A 117 NFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSN-KIQSIY--------CTDLRVLHQMPLLNLSLDLS 185 (276)
T ss_dssp TCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSS-CCCEEC--------GGGGHHHHTCTTCCEEEECC
T ss_pred chhcccCCCCCEEECcCCc-cceecCchh-hccCCCCCEEECCCC-CCCcCC--------HHHhhhhhhccccceeeecC
Confidence 6 68899999999999994 444 4554 999999999999999 776432 12233333344333 55555
Q ss_pred ecchhhhHhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCc
Q 017525 153 LNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLK 232 (370)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~ 232 (370)
.+.+..++ .......+|+.|++++|.++.++...+ ..+++|+
T Consensus 186 ~n~l~~~~-----------------------------~~~~~~~~L~~L~L~~n~l~~~~~~~~---------~~l~~L~ 227 (276)
T 2z62_A 186 LNPMNFIQ-----------------------------PGAFKEIRLKELALDTNQLKSVPDGIF---------DRLTSLQ 227 (276)
T ss_dssp SSCCCEEC-----------------------------TTSSCSCCEEEEECCSSCCSCCCTTTT---------TTCCSCC
T ss_pred CCcccccC-----------------------------ccccCCCcccEEECCCCceeecCHhHh---------ccccccc
Confidence 54322110 012223479999999999998876544 5689999
Q ss_pred EEEEeccccc
Q 017525 233 NVYISRSKFR 242 (370)
Q Consensus 233 ~L~l~~~~l~ 242 (370)
+|++++|.++
T Consensus 228 ~L~l~~N~~~ 237 (276)
T 2z62_A 228 KIWLHTNPWD 237 (276)
T ss_dssp EEECCSSCBC
T ss_pred EEEccCCccc
Confidence 9999999665
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.75 E-value=1.6e-18 Score=156.74 Aligned_cols=219 Identities=21% Similarity=0.193 Sum_probs=114.8
Q ss_pred CCEEecCCCcCCCCChHHHhcC--CCCcEEEccCCC--cchhhhhccccCCEEeccCCcccc--cCcccccCCcccEEec
Q 017525 17 LRTLFLSSNIFHRVNSDFFQSM--ASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIES--LPIEFKCLVNLKCLNL 90 (370)
Q Consensus 17 L~~L~l~~~~i~~~~~~~~~~l--~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~--lp~~~~~l~~L~~L~l 90 (370)
++.++++++.+. +..+..+ +++++|+++++. ..+..+..+++|++|++++|.++. +|..+..+++|++|++
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 445555554433 2223444 555555555554 222233445555555555555431 4444445555555555
Q ss_pred cCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCCc
Q 017525 91 EYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQY 170 (370)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~ 170 (370)
++|......+.. ++++++|++|++++|..++. ......+..+++|
T Consensus 126 ~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~----------~~l~~~~~~~~~L------------------------ 170 (336)
T 2ast_B 126 EGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSE----------FALQTLLSSCSRL------------------------ 170 (336)
T ss_dssp TTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCH----------HHHHHHHHHCTTC------------------------
T ss_pred cCcccCHHHHHH-HhcCCCCCEEECCCCCCCCH----------HHHHHHHhcCCCC------------------------
Confidence 555222222222 44455555555555422220 0112223334444
Q ss_pred cccCcEEecCcCCCCccc-cccccccC-CCcEEEEecCC--ccc--ceeccCCCccccccccccccCcEEEEeccc-ccc
Q 017525 171 VSTPSLCLSHFNNSKSLG-VFSLASLR-HLQTLQLTYND--LDE--IKIDNGGEVKRVLEISGFHSLKNVYISRSK-FRH 243 (370)
Q Consensus 171 l~L~~l~l~~~~~~~~~~-~~~l~~l~-~L~~L~l~~~~--l~~--~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~ 243 (370)
+.|.+.++..++... ...+..++ +|++|++++|. +++ ++..+ ..+++|++|++++|. +++
T Consensus 171 ---~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~----------~~~~~L~~L~l~~~~~l~~ 237 (336)
T 2ast_B 171 ---DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV----------RRCPNLVHLDLSDSVMLKN 237 (336)
T ss_dssp ---CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH----------HHCTTCSEEECTTCTTCCG
T ss_pred ---CEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHH----------hhCCCCCEEeCCCCCcCCH
Confidence 444444443333221 12355677 88888888873 332 22111 467888888888885 554
Q ss_pred --cCcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccc
Q 017525 244 --ATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEEL 298 (370)
Q Consensus 244 --~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~ 298 (370)
+..+..+++|++|++++|..+.+.. ...+..+|+|+.|++++|
T Consensus 238 ~~~~~l~~l~~L~~L~l~~~~~~~~~~------------~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 238 DCFQEFFQLNYLQHLSLSRCYDIIPET------------LLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGGGGGCTTCCEEECTTCTTCCGGG------------GGGGGGCTTCCEEECTTS
T ss_pred HHHHHHhCCCCCCEeeCCCCCCCCHHH------------HHHHhcCCCCCEEeccCc
Confidence 4567778888888888886433221 124667888888888887
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.75 E-value=2.9e-17 Score=146.72 Aligned_cols=183 Identities=20% Similarity=0.274 Sum_probs=149.4
Q ss_pred CcccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC-cchhhhhccccCCEEeccCCcccccCcccc
Q 017525 2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN-PLLFEISKVVSLQHLDLSHSRIESLPIEFK 80 (370)
Q Consensus 2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~ 80 (370)
+|.++.++....+++|+.|++++|.++.+++ +..+++|++|++++|. .....+..+++|++|++++|.++.++. +.
T Consensus 50 ~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~ 126 (308)
T 1h6u_A 50 GTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP-LA 126 (308)
T ss_dssp TSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGG-GT
T ss_pred CCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCchh-hc
Confidence 5678888876889999999999999998887 7999999999999999 333478999999999999999998875 88
Q ss_pred cCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhH
Q 017525 81 CLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQ 160 (370)
Q Consensus 81 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~ 160 (370)
.+++|+.|++++| .+..++. +.++++|++|++++| .+..++ .+..+++|+.|+++.|.+..+.
T Consensus 127 ~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n-~l~~~~-------------~l~~l~~L~~L~l~~n~l~~~~ 189 (308)
T 1h6u_A 127 GLSNLQVLYLDLN-QITNISP--LAGLTNLQYLSIGNA-QVSDLT-------------PLANLSKLTTLKADDNKISDIS 189 (308)
T ss_dssp TCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECCSS-CCCCCG-------------GGTTCTTCCEEECCSSCCCCCG
T ss_pred CCCCCCEEECCCC-ccCcCcc--ccCCCCccEEEccCC-cCCCCh-------------hhcCCCCCCEEECCCCccCcCh
Confidence 9999999999999 5565654 889999999999999 776322 2677888888888776543221
Q ss_pred hhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEeccc
Q 017525 161 RLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSK 240 (370)
Q Consensus 161 ~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 240 (370)
.+..+++|++|++++|.++.++. + ..+++|++|++++|.
T Consensus 190 ------------------------------~l~~l~~L~~L~L~~N~l~~~~~-l----------~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 190 ------------------------------PLASLPNLIEVHLKNNQISDVSP-L----------ANTSNLFIVTLTNQT 228 (308)
T ss_dssp ------------------------------GGGGCTTCCEEECTTSCCCBCGG-G----------TTCTTCCEEEEEEEE
T ss_pred ------------------------------hhcCCCCCCEEEccCCccCcccc-c----------cCCCCCCEEEccCCe
Confidence 25567889999999988887752 2 568899999999998
Q ss_pred ccccC
Q 017525 241 FRHAT 245 (370)
Q Consensus 241 l~~~~ 245 (370)
++..+
T Consensus 229 i~~~~ 233 (308)
T 1h6u_A 229 ITNQP 233 (308)
T ss_dssp EECCC
T ss_pred eecCC
Confidence 87754
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.74 E-value=3.1e-18 Score=156.66 Aligned_cols=241 Identities=15% Similarity=0.097 Sum_probs=139.7
Q ss_pred CCCCCCCEEecCCCcCCCCCh----HHHhcCC-CCcEEEccCCC---cchhhhhcc-----ccCCEEeccCCcccccCc-
Q 017525 12 PVCPRLRTLFLSSNIFHRVNS----DFFQSMA-SLRVLKWSYSN---PLLFEISKV-----VSLQHLDLSHSRIESLPI- 77 (370)
Q Consensus 12 ~~l~~L~~L~l~~~~i~~~~~----~~~~~l~-~L~~L~l~~~~---~~~~~~~~l-----~~L~~L~l~~~~l~~lp~- 77 (370)
...++|+.|++++|.++..+. ..+..++ +|++|++++|. ..+..+..+ ++|++|++++|.++..+.
T Consensus 19 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 98 (362)
T 3goz_A 19 SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD 98 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence 344558888888888887765 5567777 78888888887 334555554 788888888888764333
Q ss_pred ----ccccC-CcccEEeccCcccccccCccc----ccC-CCCCcEEEccccCCCcccccccccCCcchhhhhcccCC-Cc
Q 017525 78 ----EFKCL-VNLKCLNLEYTYGISRIPPKV----ISN-LKILETLRMYECAALPQARDSILFGDCRVLVEELLGLE-HL 146 (370)
Q Consensus 78 ----~~~~l-~~L~~L~l~~~~~~~~~~~~~----~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~L 146 (370)
.+..+ ++|++|++++|. ++..+... +.. .++|++|++++| .++... .......+...+ +|
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~-------~~~l~~~l~~~~~~L 169 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKS-------SDELIQILAAIPANV 169 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSC-------HHHHHHHHHTSCTTC
T ss_pred HHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHH-------HHHHHHHHhcCCccc
Confidence 23444 788888888874 44444322 233 357888888888 655211 012233334443 77
Q ss_pred cEEEEEecchhhhHhhhcCCCCCccccCcEEecCcCCCCcccccccccc-CCCcEEEEecCCcccceeccCCCccccccc
Q 017525 147 SVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASL-RHLQTLQLTYNDLDEIKIDNGGEVKRVLEI 225 (370)
Q Consensus 147 ~~l~l~~~~~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~ 225 (370)
+.|++++|.+........ ...+..+ ++|++|++++|.+++.+....+....
T Consensus 170 ~~L~Ls~n~l~~~~~~~l------------------------~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~---- 221 (362)
T 3goz_A 170 NSLNLRGNNLASKNCAEL------------------------AKFLASIPASVTSLDLSANLLGLKSYAELAYIFS---- 221 (362)
T ss_dssp CEEECTTSCGGGSCHHHH------------------------HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH----
T ss_pred cEeeecCCCCchhhHHHH------------------------HHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHh----
Confidence 777777665433211000 0123334 47778888877777633221110000
Q ss_pred cccccCcEEEEecccccccCc------ccCCCCccEEeeccCc---chHHhhhccccCCCcccccCCccccccccccccc
Q 017525 226 SGFHSLKNVYISRSKFRHATW------LFLAPNLKRVEIDNCQ---DMKEIIDSEKFGEVPAEVMANLIPFARLERLILE 296 (370)
Q Consensus 226 ~~~~~L~~L~l~~~~l~~~~~------l~~l~~L~~L~L~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~ 296 (370)
...++|++|++++|++++.+. +..+++|+.|++++|. ....... .+...+..+++|+.|+++
T Consensus 222 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~---------~l~~~~~~l~~L~~LdL~ 292 (362)
T 3goz_A 222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCK---------ALGAAFPNIQKIILVDKN 292 (362)
T ss_dssp HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHH---------HHHTTSTTCCEEEEECTT
T ss_pred cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHH---------HHHHHhccCCceEEEecC
Confidence 123578888888776665432 3556778888887775 1111100 022355677777788877
Q ss_pred cc
Q 017525 297 EL 298 (370)
Q Consensus 297 ~~ 298 (370)
++
T Consensus 293 ~N 294 (362)
T 3goz_A 293 GK 294 (362)
T ss_dssp SC
T ss_pred CC
Confidence 76
No 86
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=1e-17 Score=162.31 Aligned_cols=190 Identities=19% Similarity=0.236 Sum_probs=106.1
Q ss_pred CCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC-cchhhhhccccCCEEeccCCcccccCcccccCCcccEEecc
Q 017525 13 VCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN-PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLE 91 (370)
Q Consensus 13 ~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~ 91 (370)
.+..+..+.+..+.+..+.. ...+++|+.|++++|. .....+..+++|++|++++|.++.++. +..+++|+.|+++
T Consensus 19 ~l~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 19 AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECC
T ss_pred HHHHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECc
Confidence 34444555555555554433 3566666666666666 222246666666666666666665554 6666666666666
Q ss_pred CcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCCcc
Q 017525 92 YTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYV 171 (370)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l 171 (370)
+| .+..++. +..+++|+.|++++| .+.. +..+..+++|+.|+++.|.+..+
T Consensus 96 ~N-~l~~l~~--l~~l~~L~~L~Ls~N-~l~~-------------l~~l~~l~~L~~L~Ls~N~l~~l------------ 146 (605)
T 1m9s_A 96 EN-KIKDLSS--LKDLKKLKSLSLEHN-GISD-------------INGLVHLPQLESLYLGNNKITDI------------ 146 (605)
T ss_dssp SS-CCCCCTT--STTCTTCCEEECTTS-CCCC-------------CGGGGGCTTCSEEECCSSCCCCC------------
T ss_pred CC-CCCCChh--hccCCCCCEEEecCC-CCCC-------------CccccCCCccCEEECCCCccCCc------------
Confidence 66 4444442 666666666666666 5542 12345556666665555432211
Q ss_pred ccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccccccCcccCCC
Q 017525 172 STPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATWLFLAP 251 (370)
Q Consensus 172 ~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~l~~l~ 251 (370)
..+..+++|+.|+|++|.+..++. + ..+++|+.|+|++|++++++.+..++
T Consensus 147 ------------------~~l~~l~~L~~L~Ls~N~l~~~~~-l----------~~l~~L~~L~Ls~N~i~~l~~l~~l~ 197 (605)
T 1m9s_A 147 ------------------TVLSRLTKLDTLSLEDNQISDIVP-L----------AGLTKLQNLYLSKNHISDLRALAGLK 197 (605)
T ss_dssp ------------------GGGGSCTTCSEEECCSSCCCCCGG-G----------TTCTTCCEEECCSSCCCBCGGGTTCT
T ss_pred ------------------hhhcccCCCCEEECcCCcCCCchh-h----------ccCCCCCEEECcCCCCCCChHHccCC
Confidence 134445566666666665555432 1 44566666666666555555555666
Q ss_pred CccEEeeccCcc
Q 017525 252 NLKRVEIDNCQD 263 (370)
Q Consensus 252 ~L~~L~L~~~~~ 263 (370)
+|+.|+|++|..
T Consensus 198 ~L~~L~L~~N~l 209 (605)
T 1m9s_A 198 NLDVLELFSQEC 209 (605)
T ss_dssp TCSEEECCSEEE
T ss_pred CCCEEEccCCcC
Confidence 666666666553
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.74 E-value=3.8e-18 Score=152.63 Aligned_cols=136 Identities=11% Similarity=0.041 Sum_probs=96.1
Q ss_pred CCCCCEEecCCCcCCC--CCh-HHHhcCCCCcEEEccCCC---cchhhh--hccccCCEEeccCCcccc-cC----cccc
Q 017525 14 CPRLRTLFLSSNIFHR--VNS-DFFQSMASLRVLKWSYSN---PLLFEI--SKVVSLQHLDLSHSRIES-LP----IEFK 80 (370)
Q Consensus 14 l~~L~~L~l~~~~i~~--~~~-~~~~~l~~L~~L~l~~~~---~~~~~~--~~l~~L~~L~l~~~~l~~-lp----~~~~ 80 (370)
...++.+.+.++.++. +.. ..+..+++|++|++++|. ..|..+ ..+++|++|++++|.++. .+ ..+.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 3457888888876652 111 012345789999999998 566666 889999999999999874 22 2345
Q ss_pred cCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchh--hhhcccCCCccEEEEEecchhh
Q 017525 81 CLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVL--VEELLGLEHLSVFTITLNNFHA 158 (370)
Q Consensus 81 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~--~~~l~~l~~L~~l~l~~~~~~~ 158 (370)
.+++|++|++++| .+..++...++++++|++|++++| .+.... .. ...+..+++|+.|++++|.+..
T Consensus 143 ~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~---------~~~~~~~~~~l~~L~~L~Ls~N~l~~ 211 (310)
T 4glp_A 143 LKPGLKVLSIAQA-HSPAFSCEQVRAFPALTSLDLSDN-PGLGER---------GLMAALCPHKFPAIQNLALRNTGMET 211 (310)
T ss_dssp BCSCCCEEEEECC-SSCCCCTTSCCCCTTCCEEECCSC-TTCHHH---------HHHTTSCTTSSCCCCSCBCCSSCCCC
T ss_pred hccCCCEEEeeCC-CcchhhHHHhccCCCCCEEECCCC-CCccch---------hhhHHHhhhcCCCCCEEECCCCCCCc
Confidence 7999999999999 455566555899999999999999 543100 11 1223567888888888887644
Q ss_pred hH
Q 017525 159 FQ 160 (370)
Q Consensus 159 ~~ 160 (370)
++
T Consensus 212 l~ 213 (310)
T 4glp_A 212 PT 213 (310)
T ss_dssp HH
T ss_pred hH
Confidence 33
No 88
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.74 E-value=3.4e-18 Score=166.58 Aligned_cols=286 Identities=15% Similarity=0.163 Sum_probs=147.2
Q ss_pred CCCCCCEEecCCCcCCCCC----hHHHhcCCCCcEEEccCCC-------cchhhhhccccCCEEeccCCcccccCccccc
Q 017525 13 VCPRLRTLFLSSNIFHRVN----SDFFQSMASLRVLKWSYSN-------PLLFEISKVVSLQHLDLSHSRIESLPIEFKC 81 (370)
Q Consensus 13 ~l~~L~~L~l~~~~i~~~~----~~~~~~l~~L~~L~l~~~~-------~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~ 81 (370)
.+++|++|++++|.++... ..+...+++|++|+++++. .++..+.++++|++|++++|.+..+|..+..
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~ 241 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKA 241 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhh
Confidence 5666777777776554331 1234556666666666655 1233345566677777776666555555555
Q ss_pred CCcccEEeccCcc--------------------------cccccCcccccCCCCCcEEEccccCCCcccccccccCCcch
Q 017525 82 LVNLKCLNLEYTY--------------------------GISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRV 135 (370)
Q Consensus 82 l~~L~~L~l~~~~--------------------------~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 135 (370)
+++|+.|+++.+. ....++. .+..+++|++|++++| .+.. ..
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~Ls~~-~l~~----------~~ 309 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI-LFPFAAQIRKLDLLYA-LLET----------ED 309 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGG-GGGGGGGCCEEEETTC-CCCH----------HH
T ss_pred hhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHH-HHhhcCCCcEEecCCC-cCCH----------HH
Confidence 5555555554221 1112222 2445667777777766 3431 11
Q ss_pred hhhhcccCCCccEEEEEecch-hhhHhhhcCCCCCccccCcEEecC----------cCCCCcccccc-ccccCCCcEEEE
Q 017525 136 LVEELLGLEHLSVFTITLNNF-HAFQRLLGSCMPQYVSTPSLCLSH----------FNNSKSLGVFS-LASLRHLQTLQL 203 (370)
Q Consensus 136 ~~~~l~~l~~L~~l~l~~~~~-~~~~~~~~~~~~~~l~L~~l~l~~----------~~~~~~~~~~~-l~~l~~L~~L~l 203 (370)
....+..+++|+.|++..+.. ..++.+..... +|+.|.+.+ |...+..+... ...+++|++|++
T Consensus 310 ~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~----~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l 385 (592)
T 3ogk_B 310 HCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCK----QLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV 385 (592)
T ss_dssp HHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCT----TCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE
T ss_pred HHHHHHhCcCCCEEeccCccCHHHHHHHHHhCC----CCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe
Confidence 223345667777777763211 12222221111 366677764 55555443322 234566666666
Q ss_pred ecCCcccceeccCCC-----------------ccc------ccc--ccccccCcEEEEecc--cccc--cCccc-CCCCc
Q 017525 204 TYNDLDEIKIDNGGE-----------------VKR------VLE--ISGFHSLKNVYISRS--KFRH--ATWLF-LAPNL 253 (370)
Q Consensus 204 ~~~~l~~~~~~~~~~-----------------~~~------~~~--~~~~~~L~~L~l~~~--~l~~--~~~l~-~l~~L 253 (370)
+.+.+++......+. ... .++ ...+++|++|+++.| .+++ +..++ .+++|
T Consensus 386 ~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L 465 (592)
T 3ogk_B 386 YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNV 465 (592)
T ss_dssp EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTC
T ss_pred ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccc
Confidence 555554332211100 000 000 023555666666544 1222 11222 36666
Q ss_pred cEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccccccc--cCCCccCCCcceEeecCCCCCCCC
Q 017525 254 KRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTV--HSKALPFPHLKEMSVDRCPLLKKL 328 (370)
Q Consensus 254 ~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i--~~~~~~~~~L~~L~l~~c~~L~~l 328 (370)
+.|+|++|...... .+..+..+++|+.|++++|. +++. ......+++|+.|++++|. ++..
T Consensus 466 ~~L~L~~n~l~~~~------------~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~ 528 (592)
T 3ogk_B 466 RWMLLGYVGESDEG------------LMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMT 528 (592)
T ss_dssp CEEEECSCCSSHHH------------HHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTT
T ss_pred eEeeccCCCCCHHH------------HHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHH
Confidence 66666666532212 12245677999999999986 5432 2222358899999999996 6654
No 89
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.73 E-value=5e-17 Score=147.85 Aligned_cols=234 Identities=16% Similarity=0.167 Sum_probs=135.7
Q ss_pred CEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchh-hhhccccCCEEeccCCcc-cccCc-ccccCCcccEEeccC
Q 017525 18 RTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLF-EISKVVSLQHLDLSHSRI-ESLPI-EFKCLVNLKCLNLEY 92 (370)
Q Consensus 18 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~-~~~~l~~L~~L~l~~~~l-~~lp~-~~~~l~~L~~L~l~~ 92 (370)
++++.+++.++.+|..+ .+++++|++++|. .+|. .|.++++|++|++++|.+ +.+|. .+..+++++.+.+..
T Consensus 12 ~~v~C~~~~Lt~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 55667777777777652 3467777777776 4543 466777777777777765 34544 355666666544433
Q ss_pred cccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCCccc
Q 017525 93 TYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVS 172 (370)
Q Consensus 93 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~ 172 (370)
+..+..++.+++.++++|++|++++| .+..++ ........++..++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n-~l~~~~-----------~~~~~~~~~l~~l~---------------------- 134 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNT-GIKHLP-----------DVHKIHSLQKVLLD---------------------- 134 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEE-CCSSCC-----------CCTTCCBSSCEEEE----------------------
T ss_pred CCcccccCchhhhhcccccccccccc-ccccCC-----------chhhcccchhhhhh----------------------
Confidence 33555665555677777777777776 554322 01111122233333
Q ss_pred cCcEEecCcCCCCcccccccccc-CCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecc-cccccC--ccc
Q 017525 173 TPSLCLSHFNNSKSLGVFSLASL-RHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRS-KFRHAT--WLF 248 (370)
Q Consensus 173 L~~l~l~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~--~l~ 248 (370)
+.+...+.......+..+ ..++.|++++|.++.++...+ ...+|++|++.++ .++.++ .+.
T Consensus 135 -----l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f----------~~~~L~~l~l~~~n~l~~i~~~~f~ 199 (350)
T 4ay9_X 135 -----IQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF----------NGTQLDELNLSDNNNLEELPNDVFH 199 (350)
T ss_dssp -----EESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS----------TTEEEEEEECTTCTTCCCCCTTTTT
T ss_pred -----hccccccccccccchhhcchhhhhhccccccccCCChhhc----------cccchhHHhhccCCcccCCCHHHhc
Confidence 333333332222234443 357778888888887765442 2457788888764 777765 356
Q ss_pred CCCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccccccccCCCccCCCcceEeec
Q 017525 249 LAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSKALPFPHLKEMSVD 320 (370)
Q Consensus 249 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~ 320 (370)
.+++|+.|+|++|.. +.+. ...+.+|+.|.+.++.+++.++. ...+++|+.+++.
T Consensus 200 ~l~~L~~LdLs~N~l-~~lp---------------~~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 200 GASGPVILDISRTRI-HSLP---------------SYGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLT 254 (350)
T ss_dssp TEECCSEEECTTSCC-CCCC---------------SSSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECS
T ss_pred cCcccchhhcCCCCc-CccC---------------hhhhccchHhhhccCCCcCcCCC-chhCcChhhCcCC
Confidence 778888888888753 3221 12355555565556666666653 4567778777774
No 90
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.73 E-value=9.6e-18 Score=163.35 Aligned_cols=271 Identities=15% Similarity=0.142 Sum_probs=150.4
Q ss_pred CCCCCCCEEecCCCcCCCCCh----HHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccC----------------
Q 017525 12 PVCPRLRTLFLSSNIFHRVNS----DFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSH---------------- 69 (370)
Q Consensus 12 ~~l~~L~~L~l~~~~i~~~~~----~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~---------------- 69 (370)
..+++|+.|++++|.++.+.. ..+.++++|++|++++|. .++..+..+++|++|+++.
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 356778888888777653322 234567888888888776 5555666666666666652
Q ss_pred -----------CcccccCcccccCCcccEEeccCcccccc-cCcccccCCCCCcEEEccccCCCcccccccccCCcchhh
Q 017525 70 -----------SRIESLPIEFKCLVNLKCLNLEYTYGISR-IPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLV 137 (370)
Q Consensus 70 -----------~~l~~lp~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 137 (370)
+....+|..+..+++|++|++++|. +.. .....+.++++|++|++..+ +.. ....
T Consensus 269 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~--~~~----------~~l~ 335 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNV--IGD----------RGLE 335 (592)
T ss_dssp CTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHH----------HHHH
T ss_pred cccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCc--cCH----------HHHH
Confidence 2222345556677888888888875 322 11122567777777777632 221 0111
Q ss_pred hhcccCCCccEEEEE------------------------------------ecchhh--hHhhhc-CCCCCccccCcEEe
Q 017525 138 EELLGLEHLSVFTIT------------------------------------LNNFHA--FQRLLG-SCMPQYVSTPSLCL 178 (370)
Q Consensus 138 ~~l~~l~~L~~l~l~------------------------------------~~~~~~--~~~~~~-~~~~~~l~L~~l~l 178 (370)
.....+++|+.|++. .+.... +..+.. .. +|+.+.+
T Consensus 336 ~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~-----~L~~L~l 410 (592)
T 3ogk_B 336 VLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLK-----NLCDFRL 410 (592)
T ss_dssp HHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCC-----SCCEEEE
T ss_pred HHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCC-----CCcEEEE
Confidence 112334445555554 332211 111111 11 2444444
Q ss_pred cC---cCCCCcc----cc-ccccccCCCcEEEEecC--CcccceeccCCCccccccccccccCcEEEEecccccc--cC-
Q 017525 179 SH---FNNSKSL----GV-FSLASLRHLQTLQLTYN--DLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRH--AT- 245 (370)
Q Consensus 179 ~~---~~~~~~~----~~-~~l~~l~~L~~L~l~~~--~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~--~~- 245 (370)
.. +..++.. ++ ..+..+++|++|+++.+ .+++......+ ..+++|++|++++|++++ ++
T Consensus 411 ~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~--------~~~~~L~~L~L~~n~l~~~~~~~ 482 (592)
T 3ogk_B 411 VLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG--------QYSPNVRWMLLGYVGESDEGLME 482 (592)
T ss_dssp EECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHH--------HSCTTCCEEEECSCCSSHHHHHH
T ss_pred eecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHH--------HhCccceEeeccCCCCCHHHHHH
Confidence 32 2233221 01 11334556666666531 13322211111 457899999999998765 23
Q ss_pred cccCCCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccccccccCC--CccCCCcceEeecC
Q 017525 246 WLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSK--ALPFPHLKEMSVDR 321 (370)
Q Consensus 246 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~--~~~~~~L~~L~l~~ 321 (370)
.+..+++|+.|+|++|.. ++.. .+.....+|+|+.|++++|. +++.... ...+|.+....+..
T Consensus 483 ~~~~~~~L~~L~l~~n~l-~~~~-----------~~~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 483 FSRGCPNLQKLEMRGCCF-SERA-----------IAAAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp HHTCCTTCCEEEEESCCC-BHHH-----------HHHHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEEECC
T ss_pred HHhcCcccCeeeccCCCC-cHHH-----------HHHHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEEecC
Confidence 356789999999999984 3321 11245578999999999996 6554332 22467776665544
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.72 E-value=2.3e-18 Score=158.95 Aligned_cols=248 Identities=16% Similarity=0.117 Sum_probs=156.9
Q ss_pred cCCCCChHHHhcCCCCcEEEccCCC---c----chhhhhccccCCEEeccCCccc----ccCcc-------cccCCcccE
Q 017525 26 IFHRVNSDFFQSMASLRVLKWSYSN---P----LLFEISKVVSLQHLDLSHSRIE----SLPIE-------FKCLVNLKC 87 (370)
Q Consensus 26 ~i~~~~~~~~~~l~~L~~L~l~~~~---~----~~~~~~~l~~L~~L~l~~~~l~----~lp~~-------~~~l~~L~~ 87 (370)
.+..++.. +..+++|++|++++|. . ++..+..+++|++|++++|.+. .+|.. +..+++|++
T Consensus 20 ~~~~l~~~-l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~ 98 (386)
T 2ca6_A 20 DEKSVFAV-LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHT 98 (386)
T ss_dssp HHHTTSHH-HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCE
T ss_pred HHHHHHHH-HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccE
Confidence 34455555 6778888888888887 2 3344667888888888887543 33433 367788888
Q ss_pred EeccCccccc----ccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccC---------CCccEEEEEec
Q 017525 88 LNLEYTYGIS----RIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGL---------EHLSVFTITLN 154 (370)
Q Consensus 88 L~l~~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l---------~~L~~l~l~~~ 154 (370)
|++++|.... .++.. +.++++|++|++++| .++... .......+..+ ++|+.|+++.|
T Consensus 99 L~Ls~n~l~~~~~~~l~~~-l~~~~~L~~L~L~~n-~l~~~~-------~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 99 VRLSDNAFGPTAQEPLIDF-LSKHTPLEHLYLHNN-GLGPQA-------GAKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp EECCSCCCCTTTHHHHHHH-HHHCTTCCEEECCSS-CCHHHH-------HHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred EECCCCcCCHHHHHHHHHH-HHhCCCCCEEECcCC-CCCHHH-------HHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 8888884333 24433 677888888888888 554211 00112223333 56666665555
Q ss_pred chh--hhHhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCc
Q 017525 155 NFH--AFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLK 232 (370)
Q Consensus 155 ~~~--~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~ 232 (370)
.+. .++.+. ..+..+++|++|++++|.+++.......+. ....+++|+
T Consensus 170 ~l~~~~~~~l~--------------------------~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~----~l~~~~~L~ 219 (386)
T 2ca6_A 170 RLENGSMKEWA--------------------------KTFQSHRLLHTVKMVQNGIRPEGIEHLLLE----GLAYCQELK 219 (386)
T ss_dssp CCTGGGHHHHH--------------------------HHHHHCTTCCEEECCSSCCCHHHHHHHHHT----TGGGCTTCC
T ss_pred CCCcHHHHHHH--------------------------HHHHhCCCcCEEECcCCCCCHhHHHHHHHH----HhhcCCCcc
Confidence 432 111100 245677899999999998884321110000 015789999
Q ss_pred EEEEecccccc-----c-CcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCc--ccccccccccccccccccc-
Q 017525 233 NVYISRSKFRH-----A-TWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANL--IPFARLERLILEELKNLKT- 303 (370)
Q Consensus 233 ~L~l~~~~l~~-----~-~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~L~~L~l~~~~~l~~- 303 (370)
+|+|++|++++ + ..+..+++|+.|+|++|........ .++..+ ..+++|+.|++++| .++.
T Consensus 220 ~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~---------~l~~~l~~~~~~~L~~L~L~~n-~i~~~ 289 (386)
T 2ca6_A 220 VLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA---------AVVDAFSKLENIGLQTLRLQYN-EIELD 289 (386)
T ss_dssp EEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH---------HHHHHHHTCSSCCCCEEECCSS-CCBHH
T ss_pred EEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH---------HHHHHHhhccCCCeEEEECcCC-cCCHH
Confidence 99999997742 2 3567899999999999985433110 011233 34899999999998 4554
Q ss_pred ----ccCCC-ccCCCcceEeecCCC
Q 017525 304 ----VHSKA-LPFPHLKEMSVDRCP 323 (370)
Q Consensus 304 ----i~~~~-~~~~~L~~L~l~~c~ 323 (370)
++... ..+++|+.|++.+|+
T Consensus 290 g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 290 AVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred HHHHHHHHHHhcCCCceEEEccCCc
Confidence 54433 347999999999874
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.72 E-value=1.6e-16 Score=137.69 Aligned_cols=103 Identities=18% Similarity=0.204 Sum_probs=81.8
Q ss_pred CCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCcccccCc-ccccCCcccEEec
Q 017525 15 PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESLPI-EFKCLVNLKCLNL 90 (370)
Q Consensus 15 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l 90 (370)
+..+.++++++.++.+|..+ .+++++|+++++. ..+..+.++++|++|++++|.++.++. .+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 45678888888888888752 2688999999888 445568888999999999998886655 4788899999999
Q ss_pred cCcccccccCcccccCCCCCcEEEccccCCCc
Q 017525 91 EYTYGISRIPPKVISNLKILETLRMYECAALP 122 (370)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 122 (370)
++| .+..++...+.++++|++|++++| .+.
T Consensus 91 ~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~ 120 (251)
T 3m19_A 91 ANN-QLASLPLGVFDHLTQLDKLYLGGN-QLK 120 (251)
T ss_dssp TTS-CCCCCCTTTTTTCTTCCEEECCSS-CCC
T ss_pred CCC-cccccChhHhcccCCCCEEEcCCC-cCC
Confidence 988 566676666888999999999888 665
No 93
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.71 E-value=9e-18 Score=151.87 Aligned_cols=197 Identities=16% Similarity=0.137 Sum_probs=148.0
Q ss_pred CCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC----cchhhhhccccCCEEeccCCccc-ccCcccccCCcccEEe
Q 017525 15 PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN----PLLFEISKVVSLQHLDLSHSRIE-SLPIEFKCLVNLKCLN 89 (370)
Q Consensus 15 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~----~~~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~ 89 (370)
++++.|++++|.+...++. +..+++|++|++++|. .++..+..+++|++|++++|.++ ..+..++.+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 8899999999988876666 5689999999999998 27788899999999999999987 5667788899999999
Q ss_pred ccCcccccc--cCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCC-CccEEEEEecch----hhhHhh
Q 017525 90 LEYTYGISR--IPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLE-HLSVFTITLNNF----HAFQRL 162 (370)
Q Consensus 90 l~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~L~~l~l~~~~~----~~~~~~ 162 (370)
+++|..++. ++. .+.++++|++|++++|..++. ......+..++ +|+.|+++++.. ..++
T Consensus 149 L~~~~~l~~~~l~~-~~~~~~~L~~L~l~~~~~l~~----------~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~-- 215 (336)
T 2ast_B 149 LSGCSGFSEFALQT-LLSSCSRLDELNLSWCFDFTE----------KHVQVAVAHVSETITQLNLSGYRKNLQKSDLS-- 215 (336)
T ss_dssp CTTCBSCCHHHHHH-HHHHCTTCCEEECCCCTTCCH----------HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH--
T ss_pred CCCCCCCCHHHHHH-HHhcCCCCCEEcCCCCCCcCh----------HHHHHHHHhcccCCCEEEeCCCcccCCHHHHH--
Confidence 999955553 444 378899999999999844441 12345567778 888888887742 1111
Q ss_pred hcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCC-cccceeccCCCccccccccccccCcEEEEecc-c
Q 017525 163 LGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYND-LDEIKIDNGGEVKRVLEISGFHSLKNVYISRS-K 240 (370)
Q Consensus 163 ~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~ 240 (370)
..+..+++|++|++++|. +++.....+ ..+++|++|++++| .
T Consensus 216 ---------------------------~~~~~~~~L~~L~l~~~~~l~~~~~~~l---------~~l~~L~~L~l~~~~~ 259 (336)
T 2ast_B 216 ---------------------------TLVRRCPNLVHLDLSDSVMLKNDCFQEF---------FQLNYLQHLSLSRCYD 259 (336)
T ss_dssp ---------------------------HHHHHCTTCSEEECTTCTTCCGGGGGGG---------GGCTTCCEEECTTCTT
T ss_pred ---------------------------HHHhhCCCCCEEeCCCCCcCCHHHHHHH---------hCCCCCCEeeCCCCCC
Confidence 134456788888888877 554332222 45688888888888 4
Q ss_pred ccc--cCcccCCCCccEEeeccC
Q 017525 241 FRH--ATWLFLAPNLKRVEIDNC 261 (370)
Q Consensus 241 l~~--~~~l~~l~~L~~L~L~~~ 261 (370)
++. +..++.+++|+.|++++|
T Consensus 260 ~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 260 IIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCHHHHHHHhcCCCCCEEeccCc
Confidence 433 235677889999999888
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.71 E-value=1e-17 Score=148.36 Aligned_cols=185 Identities=19% Similarity=0.205 Sum_probs=143.3
Q ss_pred CcEEEccCCC-cchhhhhccccCCEEeccCCcccccCcccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccC
Q 017525 41 LRVLKWSYSN-PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECA 119 (370)
Q Consensus 41 L~~L~l~~~~-~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 119 (370)
+..+.+.... ........+++|++|++++|.++.++ .+..+++|+.|++++| .+..++. +.++++|++|++++|
T Consensus 26 ~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n-~l~~~~~--l~~l~~L~~L~l~~n- 100 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP--LANLKNLGWLFLDEN- 100 (291)
T ss_dssp HHHHHTTCSCTTSEECHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSS-
T ss_pred HHHHHhcCCCcccccchhhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCC-ccCCCcc--cccCCCCCEEECCCC-
Confidence 3333455544 33334567899999999999999886 4889999999999999 5566655 899999999999999
Q ss_pred CCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCc
Q 017525 120 ALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQ 199 (370)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~ 199 (370)
.+.. +..+..+++|+.|+++.|.+..+ ..+..+++|+
T Consensus 101 ~l~~-------------~~~l~~l~~L~~L~L~~n~i~~~------------------------------~~l~~l~~L~ 137 (291)
T 1h6t_A 101 KVKD-------------LSSLKDLKKLKSLSLEHNGISDI------------------------------NGLVHLPQLE 137 (291)
T ss_dssp CCCC-------------GGGGTTCTTCCEEECTTSCCCCC------------------------------GGGGGCTTCC
T ss_pred cCCC-------------ChhhccCCCCCEEECCCCcCCCC------------------------------hhhcCCCCCC
Confidence 7753 23367778888877776543211 2466788999
Q ss_pred EEEEecCCcccceeccCCCccccccccccccCcEEEEecccccccCcccCCCCccEEeeccCcchHHhhhccccCCCccc
Q 017525 200 TLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAE 279 (370)
Q Consensus 200 ~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~ 279 (370)
.|++++|.++.++ .+ ..+++|++|++++|++++++.+..+++|+.|++++|.. +++
T Consensus 138 ~L~l~~n~l~~~~-~l----------~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i-~~l------------ 193 (291)
T 1h6t_A 138 SLYLGNNKITDIT-VL----------SRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHI-SDL------------ 193 (291)
T ss_dssp EEECCSSCCCCCG-GG----------GGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCC-CBC------------
T ss_pred EEEccCCcCCcch-hh----------ccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcC-CCC------------
Confidence 9999999998772 22 67899999999999998887788999999999999864 322
Q ss_pred ccCCcccccccccccccccc
Q 017525 280 VMANLIPFARLERLILEELK 299 (370)
Q Consensus 280 ~~~~~~~~p~L~~L~l~~~~ 299 (370)
..+..+++|+.|+++++.
T Consensus 194 --~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 194 --RALAGLKNLDVLELFSQE 211 (291)
T ss_dssp --GGGTTCTTCSEEEEEEEE
T ss_pred --hhhccCCCCCEEECcCCc
Confidence 146788999999999873
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.70 E-value=2.4e-16 Score=136.50 Aligned_cols=173 Identities=18% Similarity=0.236 Sum_probs=114.7
Q ss_pred CCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCc-ccccCCcccEEeccCcccccccCcccccCCCCCcEEEc
Q 017525 39 ASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPI-EFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRM 115 (370)
Q Consensus 39 ~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 115 (370)
...++++++++. .+|..+. +++++|++++|+++.++. .++.+++|++|++++| .+..++...+.++++|++|++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEEC
Confidence 356777777776 6665554 578888888888776554 5777888888888887 455555555778888888888
Q ss_pred cccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCCccccCcEEecCcCCCCcccccccccc
Q 017525 116 YECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASL 195 (370)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l 195 (370)
++| .+..++ ...+..+++|+.|++++|.+..++ ...+..+
T Consensus 91 ~~n-~l~~~~-----------~~~~~~l~~L~~L~L~~N~l~~~~----------------------------~~~~~~l 130 (251)
T 3m19_A 91 ANN-QLASLP-----------LGVFDHLTQLDKLYLGGNQLKSLP----------------------------SGVFDRL 130 (251)
T ss_dssp TTS-CCCCCC-----------TTTTTTCTTCCEEECCSSCCCCCC----------------------------TTTTTTC
T ss_pred CCC-cccccC-----------hhHhcccCCCCEEEcCCCcCCCcC----------------------------hhHhccC
Confidence 887 665322 234456677777766665432110 0134556
Q ss_pred CCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccccccC--cccCCCCccEEeeccCcc
Q 017525 196 RHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHAT--WLFLAPNLKRVEIDNCQD 263 (370)
Q Consensus 196 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~--~l~~l~~L~~L~L~~~~~ 263 (370)
++|++|++++|.++.++...+ ..+++|++|++++|+++.++ .+..+++|+.|++++|..
T Consensus 131 ~~L~~L~Ls~N~l~~~~~~~~---------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 131 TKLKELRLNTNQLQSIPAGAF---------DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp TTCCEEECCSSCCCCCCTTTT---------TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred CcccEEECcCCcCCccCHHHc---------CcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence 777788888777776655333 45677888888877776654 356677888888877764
No 96
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=1.9e-17 Score=144.33 Aligned_cols=101 Identities=20% Similarity=0.227 Sum_probs=61.0
Q ss_pred CCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccccCCcccE
Q 017525 10 ESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKC 87 (370)
Q Consensus 10 ~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~ 87 (370)
+...+.+++.++++++.++.++. +..+++|++|++++|. .++ .+..+++|++|++++|.++.++. ++.+++|+.
T Consensus 14 pd~~l~~l~~l~l~~~~i~~~~~--~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~ 89 (263)
T 1xeu_A 14 PDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEE 89 (263)
T ss_dssp CSHHHHHHHHHHHTCSCTTSEEC--HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCE
T ss_pred CCHHHHHHHHHHhcCCCcccccc--hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCE
Confidence 33455556666666666666552 5666666666666666 444 55666666666666666666655 666666666
Q ss_pred EeccCcccccccCcccccCCCCCcEEEcccc
Q 017525 88 LNLEYTYGISRIPPKVISNLKILETLRMYEC 118 (370)
Q Consensus 88 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 118 (370)
|++++| .+..++. +.. ++|++|++++|
T Consensus 90 L~L~~N-~l~~l~~--~~~-~~L~~L~L~~N 116 (263)
T 1xeu_A 90 LSVNRN-RLKNLNG--IPS-ACLSRLFLDNN 116 (263)
T ss_dssp EECCSS-CCSCCTT--CCC-SSCCEEECCSS
T ss_pred EECCCC-ccCCcCc--ccc-CcccEEEccCC
Confidence 666666 4444443 222 66666666666
No 97
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.69 E-value=4.2e-17 Score=145.83 Aligned_cols=225 Identities=14% Similarity=0.099 Sum_probs=133.0
Q ss_pred CCCCcEEEccCCC----cch--hhhhccccCCEEeccCCccc-ccCccc--ccCCcccEEeccCcccccccC---ccccc
Q 017525 38 MASLRVLKWSYSN----PLL--FEISKVVSLQHLDLSHSRIE-SLPIEF--KCLVNLKCLNLEYTYGISRIP---PKVIS 105 (370)
Q Consensus 38 l~~L~~L~l~~~~----~~~--~~~~~l~~L~~L~l~~~~l~-~lp~~~--~~l~~L~~L~l~~~~~~~~~~---~~~~~ 105 (370)
...++.+.+..+. .+. ..+..+++|++|++++|.++ ..|..+ +.+++|++|++++|...+..+ ...+.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 3457888888876 111 12234578999999999987 556666 889999999999995544333 12256
Q ss_pred CCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCCccccCcEEecCcCCCC
Q 017525 106 NLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSK 185 (370)
Q Consensus 106 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~ 185 (370)
.+++|++|++++| .+..+ ....+..+++|+.|++++|.......+....
T Consensus 143 ~~~~L~~L~Ls~n-~l~~~-----------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------------------- 191 (310)
T 4glp_A 143 LKPGLKVLSIAQA-HSPAF-----------SCEQVRAFPALTSLDLSDNPGLGERGLMAAL------------------- 191 (310)
T ss_dssp BCSCCCEEEEECC-SSCCC-----------CTTSCCCCTTCCEEECCSCTTCHHHHHHTTS-------------------
T ss_pred hccCCCEEEeeCC-Ccchh-----------hHHHhccCCCCCEEECCCCCCccchhhhHHH-------------------
Confidence 8999999999999 77532 2456778899999999999864432221110
Q ss_pred ccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEeccccccc--CcccCC---CCccEEeecc
Q 017525 186 SLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHA--TWLFLA---PNLKRVEIDN 260 (370)
Q Consensus 186 ~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~l~~l---~~L~~L~L~~ 260 (370)
.+..+++|++|++++|.++.++..... -...+++|++|++++|++++. +.+..+ ++|++|++++
T Consensus 192 -----~~~~l~~L~~L~Ls~N~l~~l~~~~~~------l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~ 260 (310)
T 4glp_A 192 -----CPHKFPAIQNLALRNTGMETPTGVCAA------LAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSF 260 (310)
T ss_dssp -----CTTSSCCCCSCBCCSSCCCCHHHHHHH------HHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCS
T ss_pred -----hhhcCCCCCEEECCCCCCCchHHHHHH------HHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCC
Confidence 122345566666666555443221000 002345666666666655543 223332 4666666666
Q ss_pred CcchHHhhhccccCCCcccccCCccccccccccccccccccccccCCCccCCCcceEeecCC
Q 017525 261 CQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSKALPFPHLKEMSVDRC 322 (370)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c 322 (370)
|... .+ +..+ +++|+.|+++++ .++.++. ...+++|+.|+++++
T Consensus 261 N~l~-~l-------------p~~~--~~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 261 AGLE-QV-------------PKGL--PAKLRVLDLSSN-RLNRAPQ-PDELPEVDNLTLDGN 304 (310)
T ss_dssp SCCC-SC-------------CSCC--CSCCSCEECCSC-CCCSCCC-TTSCCCCSCEECSST
T ss_pred CCCC-ch-------------hhhh--cCCCCEEECCCC-cCCCCch-hhhCCCccEEECcCC
Confidence 5532 22 1122 256666666665 4444432 334566666666554
No 98
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.69 E-value=3.1e-17 Score=159.76 Aligned_cols=39 Identities=10% Similarity=0.183 Sum_probs=25.7
Q ss_pred cccccccccccccccccccccC--CCccCCCcceEeecCCCC
Q 017525 285 IPFARLERLILEELKNLKTVHS--KALPFPHLKEMSVDRCPL 324 (370)
Q Consensus 285 ~~~p~L~~L~l~~~~~l~~i~~--~~~~~~~L~~L~l~~c~~ 324 (370)
..+|+|+.|++++|.. .+... ....+++|+.|++++|+.
T Consensus 478 ~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 478 SGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred hcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 5578888888888753 33211 123477888888888864
No 99
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.69 E-value=1.4e-17 Score=152.21 Aligned_cols=258 Identities=11% Similarity=0.069 Sum_probs=167.4
Q ss_pred EEecCCCcCCCCChHHHhcCCCCcEEEccCCC--c-ch----hhhhccc-cCCEEeccCCccccc-CcccccC-----Cc
Q 017525 19 TLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--P-LL----FEISKVV-SLQHLDLSHSRIESL-PIEFKCL-----VN 84 (370)
Q Consensus 19 ~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~-~~----~~~~~l~-~L~~L~l~~~~l~~l-p~~~~~l-----~~ 84 (370)
.+.++.+.++...+.++...++|++|++++|. . .+ ..+..++ +|++|++++|.++.. +..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35778888887766656666779999999998 2 23 5677788 899999999988754 3344443 89
Q ss_pred ccEEeccCcccccccCccc----ccCC-CCCcEEEccccCCCcccccccccCCcchhhhhcccC-CCccEEEEEecchhh
Q 017525 85 LKCLNLEYTYGISRIPPKV----ISNL-KILETLRMYECAALPQARDSILFGDCRVLVEELLGL-EHLSVFTITLNNFHA 158 (370)
Q Consensus 85 L~~L~l~~~~~~~~~~~~~----~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~l~l~~~~~~~ 158 (370)
|++|++++|. ++..+... +..+ ++|++|++++| .++..+ .......+..+ ++|+.|++++|.+..
T Consensus 82 L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~-------~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 152 (362)
T 3goz_A 82 VTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKS-------SSEFKQAFSNLPASITSLNLRGNDLGI 152 (362)
T ss_dssp CCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSC-------HHHHHHHHTTSCTTCCEEECTTSCGGG
T ss_pred ccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCC-cCCcHH-------HHHHHHHHHhCCCceeEEEccCCcCCH
Confidence 9999999994 44433321 3444 88999999999 666322 11122334443 578888887776542
Q ss_pred hHhhhcCCCCCccccCcEEecCcCCCCccccccccccC-CCcEEEEecCCcccceeccCCCcccccccccc-ccCcEEEE
Q 017525 159 FQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLR-HLQTLQLTYNDLDEIKIDNGGEVKRVLEISGF-HSLKNVYI 236 (370)
Q Consensus 159 ~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~-~~L~~L~l 236 (370)
..... + ...+..++ +|++|++++|.+++.+...++... ..+ ++|++|++
T Consensus 153 ~~~~~---------l---------------~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l-----~~~~~~L~~L~L 203 (362)
T 3goz_A 153 KSSDE---------L---------------IQILAAIPANVNSLNLRGNNLASKNCAELAKFL-----ASIPASVTSLDL 203 (362)
T ss_dssp SCHHH---------H---------------HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH-----HTSCTTCCEEEC
T ss_pred HHHHH---------H---------------HHHHhcCCccccEeeecCCCCchhhHHHHHHHH-----HhCCCCCCEEEC
Confidence 11000 0 01233444 899999999999876543221100 234 59999999
Q ss_pred ecccccccC------cccC-CCCccEEeeccCcchHHhhhccccCCCcccccCCcccccccccccccccc-------ccc
Q 017525 237 SRSKFRHAT------WLFL-APNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELK-------NLK 302 (370)
Q Consensus 237 ~~~~l~~~~------~l~~-l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~-------~l~ 302 (370)
++|++++.. .+.. .++|++|+|++|........ .+...+..+++|+.|++++|. .+.
T Consensus 204 s~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~---------~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~ 274 (362)
T 3goz_A 204 SANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLE---------NLKLLKDSLKHLQTVYLDYDIVKNMSKEQCK 274 (362)
T ss_dssp TTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHH---------HHHHTTTTTTTCSEEEEEHHHHTTCCHHHHH
T ss_pred CCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHH---------HHHHHHhcCCCccEEEeccCCccccCHHHHH
Confidence 999887732 2344 45999999999974331110 012355778999999999984 123
Q ss_pred cccCCCccCCCcceEeecCCC
Q 017525 303 TVHSKALPFPHLKEMSVDRCP 323 (370)
Q Consensus 303 ~i~~~~~~~~~L~~L~l~~c~ 323 (370)
.+......+++|+.|++++++
T Consensus 275 ~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 275 ALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHTTSTTCCEEEEECTTSCB
T ss_pred HHHHHhccCCceEEEecCCCc
Confidence 333344457778888887764
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.69 E-value=2.8e-17 Score=159.36 Aligned_cols=187 Identities=19% Similarity=0.213 Sum_probs=145.6
Q ss_pred CCCcEEEccCCC-cchhhhhccccCCEEeccCCcccccCcccccCCcccEEeccCcccccccCcccccCCCCCcEEEccc
Q 017525 39 ASLRVLKWSYSN-PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYE 117 (370)
Q Consensus 39 ~~L~~L~l~~~~-~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 117 (370)
..+..+.+..+. .....+..+++|+.|++++|.+..+| .+..+++|+.|++++| .+..++. +..+++|+.|++++
T Consensus 21 ~~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTS-CCCCCGG--GGGCTTCCEEECCS
T ss_pred HHHHHHhccCCCcccccchhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCC-CCCCChh--hccCCCCCEEECcC
Confidence 334445566555 32334678899999999999999887 5889999999999999 5566655 88999999999999
Q ss_pred cCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCCccccCcEEecCcCCCCccccccccccCC
Q 017525 118 CAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRH 197 (370)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~ 197 (370)
| .+.. +..+..+++|+.|+++.|.+.. +..+..+++
T Consensus 97 N-~l~~-------------l~~l~~l~~L~~L~Ls~N~l~~------------------------------l~~l~~l~~ 132 (605)
T 1m9s_A 97 N-KIKD-------------LSSLKDLKKLKSLSLEHNGISD------------------------------INGLVHLPQ 132 (605)
T ss_dssp S-CCCC-------------CTTSTTCTTCCEEECTTSCCCC------------------------------CGGGGGCTT
T ss_pred C-CCCC-------------ChhhccCCCCCEEEecCCCCCC------------------------------CccccCCCc
Confidence 9 7752 2256677888887777654321 124667899
Q ss_pred CcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccccccCcccCCCCccEEeeccCcchHHhhhccccCCCc
Q 017525 198 LQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVP 277 (370)
Q Consensus 198 L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~ 277 (370)
|+.|+|++|.+..++ .+ ..+++|+.|+|++|+++++..+..+++|+.|+|++|.. .++
T Consensus 133 L~~L~Ls~N~l~~l~-~l----------~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i-~~l---------- 190 (605)
T 1m9s_A 133 LESLYLGNNKITDIT-VL----------SRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHI-SDL---------- 190 (605)
T ss_dssp CSEEECCSSCCCCCG-GG----------GSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCC-CBC----------
T ss_pred cCEEECCCCccCCch-hh----------cccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCC-CCC----------
Confidence 999999999998772 12 67899999999999998887789999999999999964 322
Q ss_pred ccccCCcccccccccccccccc
Q 017525 278 AEVMANLIPFARLERLILEELK 299 (370)
Q Consensus 278 ~~~~~~~~~~p~L~~L~l~~~~ 299 (370)
..+..+++|+.|+|++|.
T Consensus 191 ----~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 191 ----RALAGLKNLDVLELFSQE 208 (605)
T ss_dssp ----GGGTTCTTCSEEECCSEE
T ss_pred ----hHHccCCCCCEEEccCCc
Confidence 257788999999999884
No 101
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.64 E-value=7.4e-17 Score=157.10 Aligned_cols=106 Identities=18% Similarity=0.146 Sum_probs=55.5
Q ss_pred CCCCCCCEEecCCCc-CCCC---C-----------hHHHhcCCCCcEEEccCCC---cchhhhh-ccccCCEEeccCC-c
Q 017525 12 PVCPRLRTLFLSSNI-FHRV---N-----------SDFFQSMASLRVLKWSYSN---PLLFEIS-KVVSLQHLDLSHS-R 71 (370)
Q Consensus 12 ~~l~~L~~L~l~~~~-i~~~---~-----------~~~~~~l~~L~~L~l~~~~---~~~~~~~-~l~~L~~L~l~~~-~ 71 (370)
..+++|+.|+++++. +..+ + ..+...+++|++|++++|. ..+..+. .+++|++|++++| .
T Consensus 63 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~ 142 (594)
T 2p1m_B 63 RRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG 142 (594)
T ss_dssp HHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE
T ss_pred hhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCC
Confidence 346666777666652 2211 1 1223456667777766665 2233332 4666667766666 4
Q ss_pred ccc--cCcccccCCcccEEeccCcccccccCc----ccccCCCCCcEEEcccc
Q 017525 72 IES--LPIEFKCLVNLKCLNLEYTYGISRIPP----KVISNLKILETLRMYEC 118 (370)
Q Consensus 72 l~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~----~~~~~l~~L~~L~l~~~ 118 (370)
++. ++.....+++|++|++++|. ++.... .....+++|+.|++++|
T Consensus 143 ~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~ 194 (594)
T 2p1m_B 143 FSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCL 194 (594)
T ss_dssp EEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTC
T ss_pred CCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEeccc
Confidence 432 44444466666666666663 222111 11235556666666665
No 102
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.64 E-value=2.4e-15 Score=131.09 Aligned_cols=131 Identities=19% Similarity=0.202 Sum_probs=105.8
Q ss_pred CcccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCccc
Q 017525 2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEF 79 (370)
Q Consensus 2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~ 79 (370)
++.+++++....+++|+.|++++|.++.++. +..+++|++|++++|. .++. +..+++|++|++++|.++.+|...
T Consensus 28 ~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~ 104 (263)
T 1xeu_A 28 KQSVTDLVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIP 104 (263)
T ss_dssp CSCTTSEECHHHHTTCSEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCC
T ss_pred CCCcccccchhhcCcCcEEECcCCCcccchH--HhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCccc
Confidence 4667788866889999999999999998883 7999999999999999 5655 899999999999999999887644
Q ss_pred ccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEec
Q 017525 80 KCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLN 154 (370)
Q Consensus 80 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~ 154 (370)
. ++|+.|++++| .++.++. +.++++|++|++++| .++.+ ..+..+++|+.|++++|
T Consensus 105 ~--~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~Ls~N-~i~~~-------------~~l~~l~~L~~L~L~~N 160 (263)
T 1xeu_A 105 S--ACLSRLFLDNN-ELRDTDS--LIHLKNLEILSIRNN-KLKSI-------------VMLGFLSKLEVLDLHGN 160 (263)
T ss_dssp C--SSCCEEECCSS-CCSBSGG--GTTCTTCCEEECTTS-CCCBC-------------GGGGGCTTCCEEECTTS
T ss_pred c--CcccEEEccCC-ccCCChh--hcCcccccEEECCCC-cCCCC-------------hHHccCCCCCEEECCCC
Confidence 3 99999999999 5666653 899999999999999 66521 23445555555555544
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.63 E-value=1.4e-15 Score=126.66 Aligned_cols=83 Identities=22% Similarity=0.203 Sum_probs=56.5
Q ss_pred hcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccccCCcccEEeccCcccccccCcccccCCCCCcEE
Q 017525 36 QSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETL 113 (370)
Q Consensus 36 ~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 113 (370)
..+++|++|+++++. .+| .+..+++|++|++++|.++.++ .+..+++|++|++++|...+..+.. ++++++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCC-CTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChh-hcCCCCCCEE
Confidence 566777777777776 445 5677777777777777666554 5667777777777777433334443 7777778888
Q ss_pred EccccCCCc
Q 017525 114 RMYECAALP 122 (370)
Q Consensus 114 ~l~~~~~~~ 122 (370)
++++| .+.
T Consensus 118 ~Ls~n-~i~ 125 (197)
T 4ezg_A 118 DISHS-AHD 125 (197)
T ss_dssp ECCSS-BCB
T ss_pred EecCC-ccC
Confidence 87777 443
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.62 E-value=3.7e-15 Score=126.29 Aligned_cols=143 Identities=19% Similarity=0.251 Sum_probs=120.5
Q ss_pred CcccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCcccccCcc
Q 017525 2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESLPIE 78 (370)
Q Consensus 2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~lp~~ 78 (370)
++.++.+|.. -.++|+.|++++|.++.+++..+..+++|++|++++|. ..|..+.++++|++|++++|.++.+|..
T Consensus 20 ~~~l~~iP~~-l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 98 (220)
T 2v9t_B 20 GKGLTEIPTN-LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKS 98 (220)
T ss_dssp TSCCSSCCSS-CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred CCCcCcCCCc-cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHh
Confidence 4678888875 23799999999999999888778999999999999998 4578899999999999999999988875
Q ss_pred -cccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchh
Q 017525 79 -FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFH 157 (370)
Q Consensus 79 -~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~ 157 (370)
+..+++|+.|++++| .+..++...+.++++|++|++++| .+..++ ...+..+++|+.+++.+|...
T Consensus 99 ~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~-----------~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 99 LFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDN-KLQTIA-----------KGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCC-----------TTTTTTCTTCCEEECCSSCEE
T ss_pred HccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCC-cCCEEC-----------HHHHhCCCCCCEEEeCCCCcC
Confidence 578999999999999 566665555999999999999999 776433 345677889999999988764
Q ss_pred h
Q 017525 158 A 158 (370)
Q Consensus 158 ~ 158 (370)
.
T Consensus 166 c 166 (220)
T 2v9t_B 166 C 166 (220)
T ss_dssp C
T ss_pred C
Confidence 3
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.62 E-value=4.9e-15 Score=142.18 Aligned_cols=185 Identities=16% Similarity=0.176 Sum_probs=113.8
Q ss_pred CCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccccCCcccEEeccCc
Q 017525 16 RLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYT 93 (370)
Q Consensus 16 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~ 93 (370)
+|+.|++++|.++.+|..+ .++|++|++++|. .+| ..+++|++|++++|.++.+|. +.. +|+.|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l---~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL---PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC---CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhH---cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence 6677777777666666542 3567777777776 455 345677777777777766665 443 6777777776
Q ss_pred ccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCCcccc
Q 017525 94 YGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVST 173 (370)
Q Consensus 94 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~L 173 (370)
.++.+|. .+++|+.|++++| .++.+| . .+++|+.|++++|.+..+
T Consensus 131 -~l~~lp~----~l~~L~~L~Ls~N-~l~~lp---------~------~l~~L~~L~Ls~N~L~~l-------------- 175 (571)
T 3cvr_A 131 -QLTMLPE----LPALLEYINADNN-QLTMLP---------E------LPTSLEVLSVRNNQLTFL-------------- 175 (571)
T ss_dssp -CCSCCCC----CCTTCCEEECCSS-CCSCCC---------C------CCTTCCEEECCSSCCSCC--------------
T ss_pred -cCCCCCC----cCccccEEeCCCC-ccCcCC---------C------cCCCcCEEECCCCCCCCc--------------
Confidence 3444554 4666777777766 554322 1 235555555554432211
Q ss_pred CcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccccccCc-ccCCCC
Q 017525 174 PSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATW-LFLAPN 252 (370)
Q Consensus 174 ~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-l~~l~~ 252 (370)
+.+. ++|+.|++++|.++.++. + +.... ...+.|+.|++++|+++.++. +..+++
T Consensus 176 ----------------p~l~--~~L~~L~Ls~N~L~~lp~-~-~~~L~----~~~~~L~~L~Ls~N~l~~lp~~l~~l~~ 231 (571)
T 3cvr_A 176 ----------------PELP--ESLEALDVSTNLLESLPA-V-PVRNH----HSEETEIFFRCRENRITHIPENILSLDP 231 (571)
T ss_dssp ----------------CCCC--TTCCEEECCSSCCSSCCC-C-C------------CCEEEECCSSCCCCCCGGGGGSCT
T ss_pred ----------------chhh--CCCCEEECcCCCCCchhh-H-HHhhh----cccccceEEecCCCcceecCHHHhcCCC
Confidence 1122 688999999988887765 2 10000 112333999999998888764 667899
Q ss_pred ccEEeeccCcchHHhh
Q 017525 253 LKRVEIDNCQDMKEII 268 (370)
Q Consensus 253 L~~L~L~~~~~~~~~~ 268 (370)
|+.|+|++|.....++
T Consensus 232 L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 232 TCTIILEDNPLSSRIR 247 (571)
T ss_dssp TEEEECCSSSCCHHHH
T ss_pred CCEEEeeCCcCCCcCH
Confidence 9999999988655543
No 106
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.59 E-value=5.1e-15 Score=123.19 Aligned_cols=148 Identities=15% Similarity=0.143 Sum_probs=106.2
Q ss_pred CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC-cchhhhhccccCCEEeccCCcccc-cCcccccCCcccEEe
Q 017525 12 PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN-PLLFEISKVVSLQHLDLSHSRIES-LPIEFKCLVNLKCLN 89 (370)
Q Consensus 12 ~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~~L~ 89 (370)
.++++|+.|++++|.++.++. +..+++|++|++++|. ..+..+..+++|++|++++|.++. .+..++.+++|++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTT--GGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCCCccChHH--HhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 567788888888888887773 7888888888888887 555577788888888888888864 566778888888888
Q ss_pred ccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCC
Q 017525 90 LEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQ 169 (370)
Q Consensus 90 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~ 169 (370)
+++|...+..+.. ++++++|++|++++|..++.+ ..+..+++|+.|++++|.+..++.+....+
T Consensus 119 Ls~n~i~~~~~~~-l~~l~~L~~L~L~~n~~i~~~-------------~~l~~l~~L~~L~l~~n~i~~~~~l~~l~~-- 182 (197)
T 4ezg_A 119 ISHSAHDDSILTK-INTLPKVNSIDLSYNGAITDI-------------MPLKTLPELKSLNIQFDGVHDYRGIEDFPK-- 182 (197)
T ss_dssp CCSSBCBGGGHHH-HTTCSSCCEEECCSCTBCCCC-------------GGGGGCSSCCEEECTTBCCCCCTTGGGCSS--
T ss_pred ecCCccCcHhHHH-HhhCCCCCEEEccCCCCcccc-------------HhhcCCCCCCEEECCCCCCcChHHhccCCC--
Confidence 8888444434443 788888888888888225421 246677888888888887766654444433
Q ss_pred ccccCcEEecC
Q 017525 170 YVSTPSLCLSH 180 (370)
Q Consensus 170 ~l~L~~l~l~~ 180 (370)
|+.+.+.+
T Consensus 183 ---L~~L~l~~ 190 (197)
T 4ezg_A 183 ---LNQLYAFS 190 (197)
T ss_dssp ---CCEEEECB
T ss_pred ---CCEEEeeC
Confidence 55565554
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.58 E-value=1.7e-14 Score=123.04 Aligned_cols=141 Identities=21% Similarity=0.278 Sum_probs=115.9
Q ss_pred CcccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cch-hhhhccccCCEEeccCCcccccCcc
Q 017525 2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLL-FEISKVVSLQHLDLSHSRIESLPIE 78 (370)
Q Consensus 2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~-~~~~~l~~L~~L~l~~~~l~~lp~~ 78 (370)
++.++.+|.. -.++|+.|++++|.++.+++..+.++++|++|++++|. .+| ..+..+++|++|++++|.++.++..
T Consensus 28 ~~~l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 106 (229)
T 3e6j_A 28 SKRHASVPAG-IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSA 106 (229)
T ss_dssp TSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCcCccCCC-CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChh
Confidence 4567777775 34899999999999998877668999999999999998 555 4568899999999999999888764
Q ss_pred -cccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchh
Q 017525 79 -FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFH 157 (370)
Q Consensus 79 -~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~ 157 (370)
+..+++|+.|++++| .+..+|.. +.++++|++|++++| .+..++ ...+..+++|+.+++.+|...
T Consensus 107 ~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~L~~N-~l~~~~-----------~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 107 VFDRLVHLKELFMCCN-KLTELPRG-IERLTHLTHLALDQN-QLKSIP-----------HGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TTTTCTTCCEEECCSS-CCCSCCTT-GGGCTTCSEEECCSS-CCCCCC-----------TTTTTTCTTCCEEECTTSCBC
T ss_pred HhCcchhhCeEeccCC-cccccCcc-cccCCCCCEEECCCC-cCCccC-----------HHHHhCCCCCCEEEeeCCCcc
Confidence 678999999999998 66788876 889999999999999 776433 245677889999999888653
No 108
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.57 E-value=2.7e-14 Score=119.86 Aligned_cols=88 Identities=15% Similarity=0.096 Sum_probs=55.7
Q ss_pred ccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccccccCc--ccCCCCccEEeeccCcchHHhhh
Q 017525 192 LASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATW--LFLAPNLKRVEIDNCQDMKEIID 269 (370)
Q Consensus 192 l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--l~~l~~L~~L~L~~~~~~~~~~~ 269 (370)
+..+++|++|++++|.++.++...+ ..+++|++|++++|+++.++. +..+++|+.|++++|.
T Consensus 96 ~~~l~~L~~L~L~~N~l~~~~~~~~---------~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~------- 159 (208)
T 2o6s_A 96 FDKLTQLKELALNTNQLQSLPDGVF---------DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP------- 159 (208)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTT---------TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC-------
T ss_pred hcCccCCCEEEcCCCcCcccCHhHh---------ccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC-------
Confidence 4556677777777777776654432 456777777777776666543 5667778888887774
Q ss_pred ccccCCCcccccCCccccccccccccccccccccccCCC
Q 017525 270 SEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSKA 308 (370)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~~ 308 (370)
....+|+|+.|.++.+..-..++...
T Consensus 160 -------------~~~~~~~l~~L~~~~n~~~g~ip~~~ 185 (208)
T 2o6s_A 160 -------------WDCTCPGIRYLSEWINKHSGVVRNSA 185 (208)
T ss_dssp -------------BCCCTTTTHHHHHHHHHCTTTBBCTT
T ss_pred -------------eecCCCCHHHHHHHHHhCCceeeccC
Confidence 22355677777776654333444433
No 109
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.56 E-value=4.6e-14 Score=118.43 Aligned_cols=140 Identities=24% Similarity=0.295 Sum_probs=111.4
Q ss_pred CcccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cch-hhhhccccCCEEeccCCcccccCcc
Q 017525 2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLL-FEISKVVSLQHLDLSHSRIESLPIE 78 (370)
Q Consensus 2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~-~~~~~l~~L~~L~l~~~~l~~lp~~ 78 (370)
++.++.+|.. -.++|+.|++++|.++.++...+..+++|++|++++|. .++ ..+..+++|++|++++|.++.+|..
T Consensus 16 ~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 94 (208)
T 2o6s_A 16 SQGRTSVPTG-IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNG 94 (208)
T ss_dssp SSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCccCCCCC-CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHh
Confidence 3556667654 45789999999999998888778899999999999998 444 4468899999999999999887764
Q ss_pred -cccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecc
Q 017525 79 -FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNN 155 (370)
Q Consensus 79 -~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~ 155 (370)
++.+++|++|++++| .+..++...+.++++|++|++++| .+..++ ...+..+++|+.+++++|.
T Consensus 95 ~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~-----------~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 95 VFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQN-QLKSVP-----------DGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCC-----------TTTTTTCTTCCEEECCSCC
T ss_pred HhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCC-ccceeC-----------HHHhccCCCccEEEecCCC
Confidence 688999999999998 566677666889999999999999 676432 2335667788888777663
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.56 E-value=3.3e-14 Score=120.43 Aligned_cols=142 Identities=20% Similarity=0.298 Sum_probs=115.4
Q ss_pred CcccccccCCCCCCCCCEEecCCCcCCCC-ChHHHhcCCCCcEEEccCCC--cc-hhhhhccccCCEEeccCCcccccCc
Q 017525 2 TNHIENLVESPVCPRLRTLFLSSNIFHRV-NSDFFQSMASLRVLKWSYSN--PL-LFEISKVVSLQHLDLSHSRIESLPI 77 (370)
Q Consensus 2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~-~~~~~~~l~~L~~L~l~~~~--~~-~~~~~~l~~L~~L~l~~~~l~~lp~ 77 (370)
+|.++.+|.. -.+.++.|++++|.++.+ +..++..+++|++|++++|. .+ +..+..+++|++|++++|.++.++.
T Consensus 20 ~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~ 98 (220)
T 2v70_A 20 NQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQH 98 (220)
T ss_dssp SSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCG
T ss_pred CCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCH
Confidence 4678888874 345678999999999877 44557899999999999998 34 4578999999999999999987776
Q ss_pred -ccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecch
Q 017525 78 -EFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNF 156 (370)
Q Consensus 78 -~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~ 156 (370)
.+..+++|++|++++| .+..++...+.++++|++|++++| .+..+ ....+..+++|+.+++++|..
T Consensus 99 ~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~-----------~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 99 KMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDN-QITTV-----------APGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp GGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTS-CCCCB-----------CTTTTTTCTTCCEEECCSCCE
T ss_pred hHhcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCC-cCCEE-----------CHHHhcCCCCCCEEEecCcCC
Confidence 4889999999999999 555554445899999999999999 77632 245677889999999998876
Q ss_pred h
Q 017525 157 H 157 (370)
Q Consensus 157 ~ 157 (370)
.
T Consensus 166 ~ 166 (220)
T 2v70_A 166 N 166 (220)
T ss_dssp E
T ss_pred c
Confidence 4
No 111
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.54 E-value=4.7e-14 Score=135.37 Aligned_cols=175 Identities=17% Similarity=0.197 Sum_probs=133.5
Q ss_pred CcccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCccc
Q 017525 2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEF 79 (370)
Q Consensus 2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~ 79 (370)
+|.++.+|... +++|+.|++++|.|+.+| ..+++|++|++++|. .+|. +.. +|++|++++|.++.+|.
T Consensus 68 ~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~-- 137 (571)
T 3cvr_A 68 RLNLSSLPDNL-PPQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTMLPE-- 137 (571)
T ss_dssp SSCCSCCCSCC-CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSCCCC--
T ss_pred CCCCCccCHhH-cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCCCCC--
Confidence 56788888753 489999999999999888 357999999999998 7776 554 99999999999999987
Q ss_pred ccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhh
Q 017525 80 KCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAF 159 (370)
Q Consensus 80 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~ 159 (370)
.+++|+.|++++| .+..+|. .+++|++|++++| .++.+| . +. ++|+.|+++.|.+..+
T Consensus 138 -~l~~L~~L~Ls~N-~l~~lp~----~l~~L~~L~Ls~N-~L~~lp---------~----l~--~~L~~L~Ls~N~L~~l 195 (571)
T 3cvr_A 138 -LPALLEYINADNN-QLTMLPE----LPTSLEVLSVRNN-QLTFLP---------E----LP--ESLEALDVSTNLLESL 195 (571)
T ss_dssp -CCTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSS-CCSCCC---------C----CC--TTCCEEECCSSCCSSC
T ss_pred -cCccccEEeCCCC-ccCcCCC----cCCCcCEEECCCC-CCCCcc---------h----hh--CCCCEEECcCCCCCch
Confidence 7899999999999 5566765 5789999999999 777544 2 33 7899999888875543
Q ss_pred HhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecc
Q 017525 160 QRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRS 239 (370)
Q Consensus 160 ~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 239 (370)
+.+. . +| ....+.|+.|++++|.++.++... ..+++|++|+|++|
T Consensus 196 p~~~------~-~L------------------~~~~~~L~~L~Ls~N~l~~lp~~l----------~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 196 PAVP------V-RN------------------HHSEETEIFFRCRENRITHIPENI----------LSLDPTCTIILEDN 240 (571)
T ss_dssp CCCC---------------------------------CCEEEECCSSCCCCCCGGG----------GGSCTTEEEECCSS
T ss_pred hhHH------H-hh------------------hcccccceEEecCCCcceecCHHH----------hcCCCCCEEEeeCC
Confidence 3200 0 01 122345688999999888876544 34888999999998
Q ss_pred cccc
Q 017525 240 KFRH 243 (370)
Q Consensus 240 ~l~~ 243 (370)
.+++
T Consensus 241 ~l~~ 244 (571)
T 3cvr_A 241 PLSS 244 (571)
T ss_dssp SCCH
T ss_pred cCCC
Confidence 7765
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.54 E-value=6.8e-14 Score=118.43 Aligned_cols=97 Identities=19% Similarity=0.250 Sum_probs=60.7
Q ss_pred CEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cc-hhhhhccccCCEEeccCCccccc-CcccccCCcccEEeccCc
Q 017525 18 RTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PL-LFEISKVVSLQHLDLSHSRIESL-PIEFKCLVNLKCLNLEYT 93 (370)
Q Consensus 18 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~-~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~ 93 (370)
+.++++++.++.+|..+ .++|++|++++|. .+ +..+..+++|++|++++|.++.+ |..+..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 56777777777776541 2566777777666 33 23556666677777777666654 445666666666666666
Q ss_pred ccccccCcccccCCCCCcEEEcccc
Q 017525 94 YGISRIPPKVISNLKILETLRMYEC 118 (370)
Q Consensus 94 ~~~~~~~~~~~~~l~~L~~L~l~~~ 118 (370)
.+..++..++.++++|++|++++|
T Consensus 91 -~l~~l~~~~f~~l~~L~~L~L~~N 114 (220)
T 2v9t_B 91 -KITELPKSLFEGLFSLQLLLLNAN 114 (220)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred -cCCccCHhHccCCCCCCEEECCCC
Confidence 455555554566666666666666
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.51 E-value=1.1e-13 Score=117.81 Aligned_cols=119 Identities=23% Similarity=0.336 Sum_probs=105.5
Q ss_pred CcccccccCC--CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cch-hhhhccccCCEEeccCCcccccC
Q 017525 2 TNHIENLVES--PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLL-FEISKVVSLQHLDLSHSRIESLP 76 (370)
Q Consensus 2 ~n~l~~l~~~--~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~-~~~~~l~~L~~L~l~~~~l~~lp 76 (370)
+|.|+.+++. ..+++|+.|++++|.++.++...+..+++|++|++++|. .++ ..+..+++|++|++++|+++.+|
T Consensus 49 ~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp 128 (229)
T 3e6j_A 49 DNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELP 128 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred CCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccC
Confidence 5778888654 789999999999999999998878999999999999999 444 45688999999999999999999
Q ss_pred cccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCc
Q 017525 77 IEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALP 122 (370)
Q Consensus 77 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 122 (370)
..+..+++|+.|++++| .+..++...+..+++|+.|++.+| .+.
T Consensus 129 ~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~~~ 172 (229)
T 3e6j_A 129 RGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGN-PWD 172 (229)
T ss_dssp TTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS-CBC
T ss_pred cccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCC-Ccc
Confidence 99999999999999999 667777666999999999999999 543
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.48 E-value=1.2e-13 Score=125.93 Aligned_cols=146 Identities=20% Similarity=0.230 Sum_probs=101.4
Q ss_pred CcccccccCCCCCCCCCEEecCCCcCCCCChHHHh-cCCCCcEEEccCCC--cc-hhhhhccccCCEEeccCCcccccCc
Q 017525 2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQ-SMASLRVLKWSYSN--PL-LFEISKVVSLQHLDLSHSRIESLPI 77 (370)
Q Consensus 2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~-~l~~L~~L~l~~~~--~~-~~~~~~l~~L~~L~l~~~~l~~lp~ 77 (370)
++.++.+|.. -.+.++.|++++|.|+.++...+. ++++|++|++++|. .+ +..+..+++|++|++++|.++.++.
T Consensus 27 ~~~l~~iP~~-~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~ 105 (361)
T 2xot_A 27 KQQLPNVPQS-LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDE 105 (361)
T ss_dssp SSCCSSCCSS-CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCCcCccCcc-CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCH
Confidence 4566777764 235578888888888877776566 78888888888887 33 3567888888888888888877765
Q ss_pred -ccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecch
Q 017525 78 -EFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNF 156 (370)
Q Consensus 78 -~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~ 156 (370)
.+..+++|+.|++++| .+..++...+.++++|++|++++| .+..++. ..+..+..+++|+.|+++.|.+
T Consensus 106 ~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~--------~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 106 FLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQN-QISRFPV--------ELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp TTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCSCCG--------GGTC----CTTCCEEECCSSCC
T ss_pred HHhCCCcCCCEEECCCC-cccEECHHHhCCcccCCEEECCCC-cCCeeCH--------HHhcCcccCCcCCEEECCCCCC
Confidence 4678888888888888 455554445888888888888888 6664431 1122225567777777777654
Q ss_pred hh
Q 017525 157 HA 158 (370)
Q Consensus 157 ~~ 158 (370)
..
T Consensus 176 ~~ 177 (361)
T 2xot_A 176 KK 177 (361)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.48 E-value=2.3e-16 Score=151.90 Aligned_cols=203 Identities=17% Similarity=0.158 Sum_probs=129.0
Q ss_pred hccccCCEEeccCCcccccCcccccCCcccEEeccCccc-------------ccccCcccccCCCCCcEEE-ccccCCCc
Q 017525 57 SKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYG-------------ISRIPPKVISNLKILETLR-MYECAALP 122 (370)
Q Consensus 57 ~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~-------------~~~~~~~~~~~l~~L~~L~-l~~~~~~~ 122 (370)
..+++|+.|++++|+++.+|..++.+++|+.|+++++.. .+..|. .++++++|+.|+ +..+ .+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~-~l~~l~~L~~L~~l~~n-~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKE-TLQYFSTLKAVDPMRAA-YLD 423 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHH-HHHHHHHHHHHCGGGHH-HHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHH-HHHHHHhcccCcchhhc-ccc
Confidence 456778888888888888888888888888888866531 111111 234444444444 2222 111
Q ss_pred ccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEE
Q 017525 123 QARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQ 202 (370)
Q Consensus 123 ~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~ 202 (370)
.|+.+.+..+.+..++. . .++.|.++++.-.. . +.+..+++|+.|+
T Consensus 424 ----------------------~L~~l~l~~n~i~~l~~---~------~L~~L~Ls~n~l~~-l--p~~~~l~~L~~L~ 469 (567)
T 1dce_A 424 ----------------------DLRSKFLLENSVLKMEY---A------DVRVLHLAHKDLTV-L--CHLEQLLLVTHLD 469 (567)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHH---T------TCSEEECTTSCCSS-C--CCGGGGTTCCEEE
T ss_pred ----------------------hhhhhhhhcccccccCc---c------CceEEEecCCCCCC-C--cCccccccCcEee
Confidence 11111111111111111 0 25556665543222 2 3477888999999
Q ss_pred EecCCcccceeccCCCccccccccccccCcEEEEecccccccCcccCCCCccEEeeccCcchHHhhhccccCCCcccccC
Q 017525 203 LTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMA 282 (370)
Q Consensus 203 l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~ 282 (370)
+++|.++.++..+ ..+++|++|+|++|++++++.++.+++|+.|+|++|.... +. .+.
T Consensus 470 Ls~N~l~~lp~~~----------~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l~~-~~-----------~p~ 527 (567)
T 1dce_A 470 LSHNRLRALPPAL----------AALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQ-SA-----------AIQ 527 (567)
T ss_dssp CCSSCCCCCCGGG----------GGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCS-SS-----------TTG
T ss_pred cCcccccccchhh----------hcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCCCC-CC-----------CcH
Confidence 9999998776544 6789999999999998888888889999999999987432 21 034
Q ss_pred CccccccccccccccccccccccCCCc----cCCCcceEe
Q 017525 283 NLIPFARLERLILEELKNLKTVHSKAL----PFPHLKEMS 318 (370)
Q Consensus 283 ~~~~~p~L~~L~l~~~~~l~~i~~~~~----~~~~L~~L~ 318 (370)
.+..+++|+.|+++++ .++.++.... .+|+|+.|+
T Consensus 528 ~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 528 PLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp GGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEE
T ss_pred HHhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccC
Confidence 7788999999999987 4666544322 278888775
No 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.47 E-value=6.2e-14 Score=113.45 Aligned_cols=135 Identities=19% Similarity=0.236 Sum_probs=108.1
Q ss_pred CCCCCCCEEecCCCcCC--CCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccc-cCcccccCCccc
Q 017525 12 PVCPRLRTLFLSSNIFH--RVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIES-LPIEFKCLVNLK 86 (370)
Q Consensus 12 ~~l~~L~~L~l~~~~i~--~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~ 86 (370)
...++|+.|++++|.++ .+|.. +..+++|++|++++|. .+ ..+..+++|++|++++|.++. +|..+..+++|+
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CCcccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 45688999999999988 77765 7899999999999998 44 778889999999999999986 776777799999
Q ss_pred EEeccCcccccccCc-ccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhh
Q 017525 87 CLNLEYTYGISRIPP-KVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHA 158 (370)
Q Consensus 87 ~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~ 158 (370)
.|++++| .+..++. ..+..+++|++|++++| .+..++ ......+..+++|+.+++..+....
T Consensus 99 ~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~--------~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 99 HLNLSGN-KLKDISTLEPLKKLECLKSLDLFNC-EVTNLN--------DYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp EEECBSS-SCCSSGGGGGGSSCSCCCEEECCSS-GGGTST--------THHHHHHTTCSSCCEETTEETTSCB
T ss_pred EEeccCC-ccCcchhHHHHhcCCCCCEEEeeCC-cCcchH--------HHHHHHHHhCccCcEecCCCCChhh
Confidence 9999999 5666552 34899999999999999 776432 0112367778899988888776543
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.45 E-value=2e-13 Score=124.50 Aligned_cols=143 Identities=26% Similarity=0.328 Sum_probs=117.2
Q ss_pred CcccccccCC--C-CCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cc-hhhhhccccCCEEeccCCccccc
Q 017525 2 TNHIENLVES--P-VCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PL-LFEISKVVSLQHLDLSHSRIESL 75 (370)
Q Consensus 2 ~n~l~~l~~~--~-~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~-~~~~~~l~~L~~L~l~~~~l~~l 75 (370)
+|.|+.++.. . .+++|+.|++++|.|+.+++..|.++++|++|++++|. .+ +..+..+++|++|++++|.++.+
T Consensus 48 ~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~ 127 (361)
T 2xot_A 48 HNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVV 127 (361)
T ss_dssp SSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEE
Confidence 5788888876 3 89999999999999999888778999999999999999 44 45688999999999999999877
Q ss_pred -CcccccCCcccEEeccCcccccccCcccc---cCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCC--ccEE
Q 017525 76 -PIEFKCLVNLKCLNLEYTYGISRIPPKVI---SNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEH--LSVF 149 (370)
Q Consensus 76 -p~~~~~l~~L~~L~l~~~~~~~~~~~~~~---~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--L~~l 149 (370)
|..+..+++|+.|++++| .+..+|...+ ..+++|++|++++| .+..++ ...+..++. ++.+
T Consensus 128 ~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~-----------~~~~~~l~~~~l~~l 194 (361)
T 2xot_A 128 DRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLP-----------LTDLQKLPAWVKNGL 194 (361)
T ss_dssp CTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSS-CCCCCC-----------HHHHHHSCHHHHTTE
T ss_pred CHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCC-CCCccC-----------HHHhhhccHhhcceE
Confidence 457889999999999999 6777887655 67999999999999 777543 234455554 4778
Q ss_pred EEEecchh
Q 017525 150 TITLNNFH 157 (370)
Q Consensus 150 ~l~~~~~~ 157 (370)
++.+|...
T Consensus 195 ~l~~N~~~ 202 (361)
T 2xot_A 195 YLHNNPLE 202 (361)
T ss_dssp ECCSSCEE
T ss_pred EecCCCcc
Confidence 88887654
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.45 E-value=4.3e-13 Score=113.48 Aligned_cols=119 Identities=20% Similarity=0.269 Sum_probs=102.1
Q ss_pred CcccccccCC---CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCccccc
Q 017525 2 TNHIENLVES---PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESL 75 (370)
Q Consensus 2 ~n~l~~l~~~---~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~l 75 (370)
+|.|+.++.. ..+++|+.|++++|.++.+++..+.++++|++|++++|. ..+..+..+++|++|++++|.++.+
T Consensus 41 ~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 120 (220)
T 2v70_A 41 NNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCV 120 (220)
T ss_dssp SSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCB
T ss_pred CCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeE
Confidence 5778888542 689999999999999999888779999999999999999 4455688999999999999999877
Q ss_pred -CcccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCc
Q 017525 76 -PIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALP 122 (370)
Q Consensus 76 -p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 122 (370)
|..+..+++|+.|++++| .+..++...+..+++|+.|++++| .+.
T Consensus 121 ~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~ 166 (220)
T 2v70_A 121 GNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLAN-PFN 166 (220)
T ss_dssp CTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSC-CEE
T ss_pred CHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCc-CCc
Confidence 557889999999999999 556664445999999999999999 553
No 119
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.44 E-value=1.1e-12 Score=108.60 Aligned_cols=100 Identities=23% Similarity=0.289 Sum_probs=48.3
Q ss_pred CEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCc-ccccCCcccEEeccCcc
Q 017525 18 RTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPI-EFKCLVNLKCLNLEYTY 94 (370)
Q Consensus 18 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~ 94 (370)
++++++++.++.+|..+ .++|++|++++|. .+|..+..+++|++|++++|.++.++. .+..+++|+.|++++|
T Consensus 13 ~~l~~~~~~l~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N- 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN- 88 (193)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred CEEEcCCCCCCcCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-
Confidence 34455555555444431 1345555555554 444445555555555555555544433 3445555555555555
Q ss_pred cccccCcccccCCCCCcEEEccccCCCc
Q 017525 95 GISRIPPKVISNLKILETLRMYECAALP 122 (370)
Q Consensus 95 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 122 (370)
.+..++...+.++++|++|++++| .+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N-~l~ 115 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGN-DIS 115 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSS-CCC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCC-CCC
Confidence 333333333555555555555555 443
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.44 E-value=2.1e-13 Score=110.29 Aligned_cols=120 Identities=23% Similarity=0.203 Sum_probs=103.0
Q ss_pred Ccccc--cccCC-CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--c-chhhhhccccCCEEeccCCccccc
Q 017525 2 TNHIE--NLVES-PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--P-LLFEISKVVSLQHLDLSHSRIESL 75 (370)
Q Consensus 2 ~n~l~--~l~~~-~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~-~~~~~~~l~~L~~L~l~~~~l~~l 75 (370)
+|.++ .+|.. ..+++|++|++++|.++.+ . .+..+++|++|++++|. . +|..+..+++|++|++++|.++.+
T Consensus 33 ~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 110 (168)
T 2ell_A 33 NCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-S-NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDI 110 (168)
T ss_dssp SCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-S-SCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSS
T ss_pred CCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-h-hhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcc
Confidence 46777 78887 7899999999999999888 3 37999999999999999 4 777778899999999999999987
Q ss_pred C--cccccCCcccEEeccCcccccccCc---ccccCCCCCcEEEccccCCCcccc
Q 017525 76 P--IEFKCLVNLKCLNLEYTYGISRIPP---KVISNLKILETLRMYECAALPQAR 125 (370)
Q Consensus 76 p--~~~~~l~~L~~L~l~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~ 125 (370)
| ..++.+++|+.|++++| .+..++. ..+..+++|++|++.+| ....++
T Consensus 111 ~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~ 163 (168)
T 2ell_A 111 STLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAP 163 (168)
T ss_dssp GGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEET-TSCBCC
T ss_pred hhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCC-Chhhcc
Confidence 6 67889999999999999 5566665 45899999999999999 665444
No 121
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.43 E-value=2.3e-13 Score=110.96 Aligned_cols=139 Identities=14% Similarity=0.164 Sum_probs=111.5
Q ss_pred cCCCCCCCCCEEecCCCcCCCCChHHHhcC-CCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCccc-ccCCc
Q 017525 9 VESPVCPRLRTLFLSSNIFHRVNSDFFQSM-ASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEF-KCLVN 84 (370)
Q Consensus 9 ~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l-~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~-~~l~~ 84 (370)
+...++++|+.|++++|.++.++. +..+ ++|++|++++|. .+ ..+..+++|++|++++|.++.+|..+ +.+++
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~i~~--~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPVIEN--LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCSCCC--GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred HhcCCcCCceEEEeeCCCCchhHH--hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 333678999999999999998865 4444 499999999999 44 68889999999999999999888765 89999
Q ss_pred ccEEeccCcccccccCc-ccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhH
Q 017525 85 LKCLNLEYTYGISRIPP-KVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQ 160 (370)
Q Consensus 85 L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~ 160 (370)
|+.|++++| .++.++. ..+..+++|++|++++| .+..++ ......+..+++|+.++++.+......
T Consensus 90 L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~--------~~~~~~~~~l~~L~~Ld~~~n~~~~~~ 156 (176)
T 1a9n_A 90 LTELILTNN-SLVELGDLDPLASLKSLTYLCILRN-PVTNKK--------HYRLYVIYKVPQVRVLDFQKVKLKERQ 156 (176)
T ss_dssp CCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSS-GGGGST--------THHHHHHHHCTTCSEETTEECCHHHHH
T ss_pred CCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCC-CCCCcH--------hHHHHHHHHCCccceeCCCcCCHHHHH
Confidence 999999999 5677765 23889999999999999 776433 011224678899999999988765543
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.42 E-value=9.3e-13 Score=108.96 Aligned_cols=114 Identities=23% Similarity=0.292 Sum_probs=60.7
Q ss_pred cccccccCCCCCCCCCEEecCCCcCCCCChH-HHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCcccccCc-
Q 017525 3 NHIENLVESPVCPRLRTLFLSSNIFHRVNSD-FFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESLPI- 77 (370)
Q Consensus 3 n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~-~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~lp~- 77 (370)
|.++.+|.. -.++|+.|++++|.++.++.. ++..+++|++|++++|. ..|..+..+++|++|++++|+++.++.
T Consensus 18 ~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 96 (192)
T 1w8a_A 18 RGLKEIPRD-IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNK 96 (192)
T ss_dssp SCCSSCCSC-CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSS
T ss_pred CCcCcCccC-CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHH
Confidence 445555543 122566666666655555442 34556666666666665 234555556666666666666554443
Q ss_pred ccccCCcccEEeccCcccccccCcccccCCCCCcEEEcccc
Q 017525 78 EFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYEC 118 (370)
Q Consensus 78 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 118 (370)
.++.+++|++|++++|. +..++...+..+++|++|++++|
T Consensus 97 ~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 97 MFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp SSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTC
T ss_pred HhcCCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEEEeCCC
Confidence 25555666666666652 33232222555666666666655
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.41 E-value=1.6e-13 Score=108.58 Aligned_cols=128 Identities=18% Similarity=0.251 Sum_probs=101.1
Q ss_pred CCCCCCCEEecCCCcCC--CCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccc-cCcccccCCccc
Q 017525 12 PVCPRLRTLFLSSNIFH--RVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIES-LPIEFKCLVNLK 86 (370)
Q Consensus 12 ~~l~~L~~L~l~~~~i~--~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~ 86 (370)
...++|+.|++++|.++ .++.. +..+++|++|++++|. .+ ..++.+++|++|++++|.++. +|..++.+++|+
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGL-TDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSC-CTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CCCccCeEEEccCCcCChhHHHHH-HhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 45688999999999988 67764 7899999999999998 44 778899999999999999986 777777899999
Q ss_pred EEeccCcccccccC-cccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEE
Q 017525 87 CLNLEYTYGISRIP-PKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTI 151 (370)
Q Consensus 87 ~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l 151 (370)
+|++++| .+..++ ...++.+++|++|++++| .+..++ ......+..+++|+.+++
T Consensus 92 ~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~--------~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 92 HLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNC-EVTNLN--------DYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp EEECTTS-CCCSHHHHGGGGGCTTCCEEECTTC-GGGGST--------THHHHHHHHCTTCCEETT
T ss_pred EEECCCC-cCCChHHHHHHhhCCCCCEEeCcCC-cccchH--------HHHHHHHHHCCCcccccC
Confidence 9999999 455543 133899999999999999 776432 011135666777777654
No 124
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.41 E-value=2e-12 Score=105.42 Aligned_cols=114 Identities=22% Similarity=0.313 Sum_probs=70.5
Q ss_pred cccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cch-hhhhccccCCEEeccCCcccccCcc-
Q 017525 3 NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLL-FEISKVVSLQHLDLSHSRIESLPIE- 78 (370)
Q Consensus 3 n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~-~~~~~l~~L~~L~l~~~~l~~lp~~- 78 (370)
+.++.+|.. -.++|+.|++++|.++.++...+..+++|++|++++|. .++ ..+..+++|++|++++|.++.+|..
T Consensus 17 ~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 95 (177)
T 2o6r_A 17 KGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGV 95 (177)
T ss_dssp SCCSSCCTT-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCccCCCC-CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHH
Confidence 445555543 33566777777766666666555666677777777666 333 3346666677777777766655553
Q ss_pred cccCCcccEEeccCcccccccCcccccCCCCCcEEEcccc
Q 017525 79 FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYEC 118 (370)
Q Consensus 79 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 118 (370)
++.+++|+.|++++| .+..++...+.++++|++|++++|
T Consensus 96 ~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 96 FDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred hhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCC
Confidence 456666777777666 445555554566666777776666
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.41 E-value=5.2e-13 Score=105.67 Aligned_cols=112 Identities=24% Similarity=0.235 Sum_probs=96.8
Q ss_pred Ccccc--cccCC-CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--c-chhhhhccccCCEEeccCCccccc
Q 017525 2 TNHIE--NLVES-PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--P-LLFEISKVVSLQHLDLSHSRIESL 75 (370)
Q Consensus 2 ~n~l~--~l~~~-~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~-~~~~~~~l~~L~~L~l~~~~l~~l 75 (370)
+|.++ .+|.. ..+++|+.|++++|.++.+ . .+..+++|++|++++|. . +|..+..+++|++|++++|.++.+
T Consensus 26 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~ 103 (149)
T 2je0_A 26 NSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-A-NLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDL 103 (149)
T ss_dssp TCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-T-TCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSH
T ss_pred CCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-h-hhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCCh
Confidence 46677 77877 7899999999999999888 3 37999999999999999 4 788888899999999999999876
Q ss_pred C--cccccCCcccEEeccCcccccccCc---ccccCCCCCcEEEcc
Q 017525 76 P--IEFKCLVNLKCLNLEYTYGISRIPP---KVISNLKILETLRMY 116 (370)
Q Consensus 76 p--~~~~~l~~L~~L~l~~~~~~~~~~~---~~~~~l~~L~~L~l~ 116 (370)
| ..++.+++|++|++++| .+..++. ..+..+++|+.|+++
T Consensus 104 ~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 104 STIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred HHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 5 67899999999999999 5566665 458899999999875
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.38 E-value=3.1e-12 Score=105.83 Aligned_cols=116 Identities=23% Similarity=0.323 Sum_probs=101.5
Q ss_pred CcccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCcccccCc-
Q 017525 2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESLPI- 77 (370)
Q Consensus 2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~lp~- 77 (370)
+|.++.+|.. -.++|+.|++++|.++.+|.. +.++++|++|++++|. ..+..+.++++|++|++++|.++.++.
T Consensus 19 ~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~~-~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~ 96 (193)
T 2wfh_A 19 NKGLKVLPKG-IPRDVTELYLDGNQFTLVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPR 96 (193)
T ss_dssp TSCCSSCCSC-CCTTCCEEECCSSCCCSCCGG-GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT
T ss_pred CCCCCcCCCC-CCCCCCEEECCCCcCchhHHH-hhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHH
Confidence 5678888875 347999999999999999865 8999999999999999 444678999999999999999998876
Q ss_pred ccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCC
Q 017525 78 EFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAAL 121 (370)
Q Consensus 78 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 121 (370)
.+..+++|+.|++++| .+..++..++..+++|+.|++.+| .+
T Consensus 97 ~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~~ 138 (193)
T 2wfh_A 97 TFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGAN-PL 138 (193)
T ss_dssp TTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSS-CE
T ss_pred HhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCC-Ce
Confidence 6889999999999999 677788777999999999999999 44
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.36 E-value=2.7e-12 Score=106.18 Aligned_cols=124 Identities=19% Similarity=0.275 Sum_probs=103.7
Q ss_pred CEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchh--hhhccccCCEEeccCCccccc-CcccccCCcccEEeccC
Q 017525 18 RTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLF--EISKVVSLQHLDLSHSRIESL-PIEFKCLVNLKCLNLEY 92 (370)
Q Consensus 18 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~--~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~ 92 (370)
+.++++++.++.+|..+ ..+|++|+++++. .++. .+..+++|++|++++|.++.+ |..++.+++|+.|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCC---CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 78999999999998753 2389999999999 5554 388999999999999999876 56789999999999999
Q ss_pred cccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchh
Q 017525 93 TYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFH 157 (370)
Q Consensus 93 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~ 157 (370)
| .+..++...+.++++|++|++++| .+.. ..+..+..+++|+.+++++|...
T Consensus 88 N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~-----------~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 N-KIKEISNKMFLGLHQLKTLNLYDN-QISC-----------VMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp C-CCCEECSSSSTTCTTCCEEECCSS-CCCE-----------ECTTSSTTCTTCCEEECTTCCBC
T ss_pred C-cCCccCHHHhcCCCCCCEEECCCC-cCCe-----------eCHHHhhcCCCCCEEEeCCCCcc
Confidence 9 566666656899999999999999 7763 22456778899999999988754
No 128
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.36 E-value=4.6e-12 Score=113.98 Aligned_cols=98 Identities=10% Similarity=0.091 Sum_probs=54.6
Q ss_pred cCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEeccccccc--CcccCCCCcc-EEeeccCcchHHhhhcc
Q 017525 195 LRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHA--TWLFLAPNLK-RVEIDNCQDMKEIIDSE 271 (370)
Q Consensus 195 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~l~~l~~L~-~L~L~~~~~~~~~~~~~ 271 (370)
+++|+.+++++|.++.++...+ ..+++|+.|++.++ ++.+ .++..+.+|+ .|++.+ .++.+.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF---------~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~--- 289 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTF---------AQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIE--- 289 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTT---------TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEEC---
T ss_pred cCCCeEEECCCCCcceecHhhh---------hCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEc---
Confidence 5667777777666666655444 45667777777665 4333 2355666676 676665 233331
Q ss_pred ccCCCcccccCCccccccccccccccccccccccCCCc-cCCCcceE
Q 017525 272 KFGEVPAEVMANLIPFARLERLILEELKNLKTVHSKAL-PFPHLKEM 317 (370)
Q Consensus 272 ~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~~~-~~~~L~~L 317 (370)
...+..+++|+.+.+.+. .++.|..... .+++|+.+
T Consensus 290 ---------~~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 290 ---------FGAFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp ---------TTTTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEE
T ss_pred ---------hhhhhCCccCCEEEeCCC-ccCccchhhhcCCcchhhh
Confidence 135566666776666543 4555544322 24444443
No 129
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.34 E-value=7.1e-11 Score=108.83 Aligned_cols=98 Identities=15% Similarity=0.195 Sum_probs=46.2
Q ss_pred CCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccccCCcccEEeccCc
Q 017525 16 RLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYT 93 (370)
Q Consensus 16 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~ 93 (370)
+|+.+.+..+ ++.++..+|.++ +|+.+.+...- .-...|.+|++|+.+++..++++.++.....+.+|+.+.+..+
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~ 213 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT 213 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCTTCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCCCccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc
Confidence 4555555443 444444444443 35555554422 2223444555555555555555555443333455555555432
Q ss_pred ccccccCcccccCCCCCcEEEccc
Q 017525 94 YGISRIPPKVISNLKILETLRMYE 117 (370)
Q Consensus 94 ~~~~~~~~~~~~~l~~L~~L~l~~ 117 (370)
+..++..+|.++++|+.+++..
T Consensus 214 --l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 214 --LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp --CCEECTTTTTTCTTCCCEECCT
T ss_pred --hheehhhHhhCCCCCCEEecCC
Confidence 4444444455555555555543
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.33 E-value=3.2e-12 Score=126.82 Aligned_cols=107 Identities=25% Similarity=0.237 Sum_probs=91.5
Q ss_pred CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccccCCcccEEe
Q 017525 12 PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLN 89 (370)
Q Consensus 12 ~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~ 89 (370)
..++.|+.|+|++|.+..++.. +..+++|++|+|++|. .+|..++.+++|++|+|++|.++.+|..++.+++|++|+
T Consensus 221 ~~l~~L~~L~Ls~n~l~~l~~~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~ 299 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQIFNISAN-IFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFY 299 (727)
T ss_dssp -CCCCCCEEECTTSCCSCCCGG-GGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEE
T ss_pred ccCCCCcEEECCCCCCCCCChh-hcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEE
Confidence 6788899999999988888877 4588999999999988 788888889999999999998888888888899999999
Q ss_pred ccCcccccccCcccccCCCCCcEEEccccCCCc
Q 017525 90 LEYTYGISRIPPKVISNLKILETLRMYECAALP 122 (370)
Q Consensus 90 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 122 (370)
+++| .++.+|.. |+++++|++|++++| .+.
T Consensus 300 L~~N-~l~~lp~~-~~~l~~L~~L~L~~N-~l~ 329 (727)
T 4b8c_D 300 FFDN-MVTTLPWE-FGNLCNLQFLGVEGN-PLE 329 (727)
T ss_dssp CCSS-CCCCCCSS-TTSCTTCCCEECTTS-CCC
T ss_pred CCCC-CCCccChh-hhcCCCccEEeCCCC-ccC
Confidence 9988 56788876 888999999999988 665
No 131
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.33 E-value=5.4e-12 Score=121.50 Aligned_cols=103 Identities=17% Similarity=0.157 Sum_probs=84.5
Q ss_pred CCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccccCCcccEEeccCc
Q 017525 16 RLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYT 93 (370)
Q Consensus 16 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~ 93 (370)
.|+.|++++|.++.+|. +..+++|++|++++|. .+|..++.+++|++|++++|.++.+| .++.+++|+.|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC
Confidence 48888888888888875 7888888888888888 77888888888888888888888887 7888888888888888
Q ss_pred cccccc--CcccccCCCCCcEEEccccCCCccc
Q 017525 94 YGISRI--PPKVISNLKILETLRMYECAALPQA 124 (370)
Q Consensus 94 ~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~ 124 (370)
.+..+ |.. ++++++|+.|++++| .+...
T Consensus 519 -~l~~~~~p~~-l~~l~~L~~L~L~~N-~l~~~ 548 (567)
T 1dce_A 519 -RLQQSAAIQP-LVSCPRLVLLNLQGN-SLCQE 548 (567)
T ss_dssp -CCCSSSTTGG-GGGCTTCCEEECTTS-GGGGS
T ss_pred -CCCCCCCcHH-HhcCCCCCEEEecCC-cCCCC
Confidence 45555 554 888888888888888 66543
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.33 E-value=1.5e-12 Score=106.10 Aligned_cols=117 Identities=15% Similarity=0.142 Sum_probs=98.6
Q ss_pred CcccccccCCCCC-CCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhh-hhccccCCEEeccCCcccccCc
Q 017525 2 TNHIENLVESPVC-PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFE-ISKVVSLQHLDLSHSRIESLPI 77 (370)
Q Consensus 2 ~n~l~~l~~~~~l-~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~-~~~l~~L~~L~l~~~~l~~lp~ 77 (370)
+|.++.++....+ ++|+.|++++|.++.++ . +..+++|++|++++|. .+|.. +..+++|++|++++|.++.+|.
T Consensus 28 ~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~-~-l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~ 105 (176)
T 1a9n_A 28 GYKIPVIENLGATLDQFDAIDFSDNEIRKLD-G-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGD 105 (176)
T ss_dssp TSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-C-CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGG
T ss_pred CCCCchhHHhhhcCCCCCEEECCCCCCCccc-c-cccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchh
Confidence 5778888766454 59999999999998873 3 7899999999999999 56644 4899999999999999998887
Q ss_pred --ccccCCcccEEeccCcccccccCcc---cccCCCCCcEEEccccCCCc
Q 017525 78 --EFKCLVNLKCLNLEYTYGISRIPPK---VISNLKILETLRMYECAALP 122 (370)
Q Consensus 78 --~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~l~~L~~L~l~~~~~~~ 122 (370)
.++.+++|+.|++++| .+..++.. ++..+++|+.|++++| ...
T Consensus 106 ~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n-~~~ 153 (176)
T 1a9n_A 106 LDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKV-KLK 153 (176)
T ss_dssp GGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEEC-CHH
T ss_pred hHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcC-CHH
Confidence 7889999999999999 55666653 4889999999999988 443
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.28 E-value=2.5e-11 Score=98.88 Aligned_cols=125 Identities=22% Similarity=0.218 Sum_probs=103.4
Q ss_pred CCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cch-hhhhccccCCEEeccCCcccccCcc-cccCCcccEEeccC
Q 017525 17 LRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLL-FEISKVVSLQHLDLSHSRIESLPIE-FKCLVNLKCLNLEY 92 (370)
Q Consensus 17 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~ 92 (370)
.+.++++++.++.+|.. ..++|++|+++++. .++ ..+..+++|++|++++|.++.+|.. ++.+++|+.|++++
T Consensus 9 ~~~l~~~~~~l~~~p~~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTG---IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCCTT---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCCCC---CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 57899999999998864 34799999999998 444 4568899999999999999988764 68999999999999
Q ss_pred cccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchh
Q 017525 93 TYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFH 157 (370)
Q Consensus 93 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~ 157 (370)
| .++.++...+.++++|++|++++| .+..++ ...+..+++|+.+++++|...
T Consensus 86 N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~-----------~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 86 N-KLQSLPNGVFDKLTQLKELALDTN-QLKSVP-----------DGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCC-----------TTTTTTCTTCCEEECCSSCBC
T ss_pred C-CccccCHHHhhCCcccCEEECcCC-cceEeC-----------HHHhcCCcccCEEEecCCCee
Confidence 9 566777666899999999999999 776433 234567899999999988754
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.27 E-value=1.4e-13 Score=114.54 Aligned_cols=128 Identities=17% Similarity=0.197 Sum_probs=95.5
Q ss_pred CCCEEecCCC--cCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccccCCcccEEecc
Q 017525 16 RLRTLFLSSN--IFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLE 91 (370)
Q Consensus 16 ~L~~L~l~~~--~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~ 91 (370)
.++...+.+. .++.+|.. +..+++|++|++++|. .+| .+..+++|++|++++|.++.+|..+..+++|+.|+++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~-~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDAT-LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWIS 101 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHH-HHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEE
T ss_pred chheeEeccccCcHhhhhHH-HhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECc
Confidence 3444444443 34445444 7889999999998888 666 7888899999999999888888877778889999999
Q ss_pred CcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhh
Q 017525 92 YTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAF 159 (370)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~ 159 (370)
+| .+..++ . +.++++|++|++++| .+..++ ....+..+++|+.+++++|.....
T Consensus 102 ~N-~l~~l~-~-~~~l~~L~~L~l~~N-~i~~~~----------~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 102 YN-QIASLS-G-IEKLVNLRVLYMSNN-KITNWG----------EIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp EE-ECCCHH-H-HHHHHHSSEEEESEE-ECCCHH----------HHHHHTTTTTCSEEEECSCHHHHH
T ss_pred CC-cCCcCC-c-cccCCCCCEEECCCC-cCCchh----------HHHHHhcCCCCCEEEecCCccccc
Confidence 88 555565 3 788888999999888 665322 224677788899999988876543
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.23 E-value=9.1e-12 Score=123.56 Aligned_cols=113 Identities=20% Similarity=0.221 Sum_probs=95.6
Q ss_pred CChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccccCCcccEEeccCcccccccCcccccCC
Q 017525 30 VNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNL 107 (370)
Q Consensus 30 ~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l 107 (370)
+++..+..++.|++|+|++|. .+|..+..+++|++|+|++|.++.+|..++.+++|+.|+|++| .+..+|.. ++++
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l 292 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAE-LGSC 292 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSS-GGGG
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChh-hcCC
Confidence 345558899999999999999 7888888999999999999999999999999999999999999 56688887 9999
Q ss_pred CCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchh
Q 017525 108 KILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFH 157 (370)
Q Consensus 108 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~ 157 (370)
++|++|++++| .++.+ +..+..+++|+.|++++|.+.
T Consensus 293 ~~L~~L~L~~N-~l~~l------------p~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 293 FQLKYFYFFDN-MVTTL------------PWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp TTCSEEECCSS-CCCCC------------CSSTTSCTTCCCEECTTSCCC
T ss_pred CCCCEEECCCC-CCCcc------------ChhhhcCCCccEEeCCCCccC
Confidence 99999999999 77744 345788899999999998765
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.20 E-value=7.6e-11 Score=95.68 Aligned_cols=101 Identities=19% Similarity=0.231 Sum_probs=86.6
Q ss_pred CCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCcccccCcc-cccCCcccEEeccC
Q 017525 17 LRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESLPIE-FKCLVNLKCLNLEY 92 (370)
Q Consensus 17 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~ 92 (370)
-+.++++++.++.+|..+ .++|++|++++|. ..|..+.++++|++|++++|+++.+|.. +..+++|+.|++++
T Consensus 14 ~~~l~~~~n~l~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 378999999999998762 3899999999998 4467789999999999999999988875 57899999999999
Q ss_pred cccccccCcccccCCCCCcEEEccccCCCc
Q 017525 93 TYGISRIPPKVISNLKILETLRMYECAALP 122 (370)
Q Consensus 93 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 122 (370)
| .+..++...+.++++|++|++++| .+.
T Consensus 91 N-~l~~l~~~~~~~l~~L~~L~L~~N-~~~ 118 (174)
T 2r9u_A 91 N-HLKSIPRGAFDNLKSLTHIYLYNN-PWD 118 (174)
T ss_dssp S-CCCCCCTTTTTTCTTCSEEECCSS-CBC
T ss_pred C-ccceeCHHHhccccCCCEEEeCCC-Ccc
Confidence 8 667777766899999999999999 554
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.20 E-value=7.6e-11 Score=95.33 Aligned_cols=102 Identities=22% Similarity=0.248 Sum_probs=86.4
Q ss_pred CCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--c-chhhhhccccCCEEeccCCcccccCcc-cccCCcccEEecc
Q 017525 16 RLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--P-LLFEISKVVSLQHLDLSHSRIESLPIE-FKCLVNLKCLNLE 91 (370)
Q Consensus 16 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~-~~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~ 91 (370)
..+.++++++.++.+|..+ .++|++|++++|. . .|..+..+++|++|++++|+++.+|.. +..+++|++|+++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 3578999999999998752 3889999999998 4 467788999999999999999988875 5789999999999
Q ss_pred CcccccccCcccccCCCCCcEEEccccCCCc
Q 017525 92 YTYGISRIPPKVISNLKILETLRMYECAALP 122 (370)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 122 (370)
+| .+..++...+.++++|++|++++| .+.
T Consensus 87 ~N-~l~~~~~~~~~~l~~L~~L~L~~N-~~~ 115 (170)
T 3g39_A 87 DN-QLKSIPRGAFDNLKSLTHIWLLNN-PWD 115 (170)
T ss_dssp SS-CCCCCCTTTTTTCTTCCEEECCSS-CBC
T ss_pred CC-ccCEeCHHHhcCCCCCCEEEeCCC-CCC
Confidence 98 667777766899999999999999 554
No 138
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.15 E-value=1.7e-09 Score=99.60 Aligned_cols=134 Identities=11% Similarity=0.144 Sum_probs=103.2
Q ss_pred cccccccCC--CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCc-
Q 017525 3 NHIENLVES--PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPI- 77 (370)
Q Consensus 3 n~l~~l~~~--~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~- 77 (370)
+.++.++.. .+ .+|+.+.+.. .++.++...|.+|++|+.++++.+. .++.....+.+|+.+.+..+ ++.++.
T Consensus 144 ~~i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~ 220 (401)
T 4fdw_A 144 EGLKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQ 220 (401)
T ss_dssp TTCCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTT
T ss_pred CCccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhh
Confidence 346666665 33 4799999986 6888888889999999999999887 66655555789999999854 776665
Q ss_pred ccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecc
Q 017525 78 EFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNN 155 (370)
Q Consensus 78 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~ 155 (370)
.+..+++|+.+++..+ +..++..+|.+ .+|+.+.+.. .+..+ ....+..+++|+.+.+..+.
T Consensus 221 aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~--~i~~I-----------~~~aF~~c~~L~~l~l~~~~ 282 (401)
T 4fdw_A 221 AFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPN--GVTNI-----------ASRAFYYCPELAEVTTYGST 282 (401)
T ss_dssp TTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEET--TCCEE-----------CTTTTTTCTTCCEEEEESSC
T ss_pred HhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCC--CccEE-----------ChhHhhCCCCCCEEEeCCcc
Confidence 5788999999999874 67777777888 7899999954 34432 24567788999999887654
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.12 E-value=3.6e-12 Score=105.91 Aligned_cols=103 Identities=23% Similarity=0.260 Sum_probs=65.1
Q ss_pred CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccccCCcccEEe
Q 017525 12 PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLN 89 (370)
Q Consensus 12 ~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~ 89 (370)
..+++|+.|++++|.++.++ . +..+++|++|++++|. .+|..+..+++|++|++++|.++.+| .++.+++|+.|+
T Consensus 45 ~~l~~L~~L~ls~n~l~~l~-~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~ 121 (198)
T 1ds9_A 45 STLKACKHLALSTNNIEKIS-S-LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLY 121 (198)
T ss_dssp HHTTTCSEEECSEEEESCCC-C-HHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEE
T ss_pred hcCCCCCEEECCCCCCcccc-c-cccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEE
Confidence 55666777777666666665 2 5666777777776666 55555566666777777777666655 456666677777
Q ss_pred ccCcccccccCc-ccccCCCCCcEEEcccc
Q 017525 90 LEYTYGISRIPP-KVISNLKILETLRMYEC 118 (370)
Q Consensus 90 l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~ 118 (370)
+++| .+..++. ..+..+++|++|++++|
T Consensus 122 l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 122 MSNN-KITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp ESEE-ECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred CCCC-cCCchhHHHHHhcCCCCCEEEecCC
Confidence 7666 3343332 22566666777777666
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.11 E-value=3e-10 Score=92.13 Aligned_cols=92 Identities=18% Similarity=0.322 Sum_probs=81.2
Q ss_pred CcccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhh-hhccccCCEEeccCCcccccCcc
Q 017525 2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFE-ISKVVSLQHLDLSHSRIESLPIE 78 (370)
Q Consensus 2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~-~~~l~~L~~L~l~~~~l~~lp~~ 78 (370)
+|.++.+|... .++|+.|++++|.++.+++..+.++++|++|++++|. .+|.. +..+++|++|++++|.++.+|..
T Consensus 21 ~n~l~~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~ 99 (174)
T 2r9u_A 21 NIRLASVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRG 99 (174)
T ss_dssp SSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCCCccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHH
Confidence 56788888863 4899999999999999977778999999999999999 66654 58899999999999999988875
Q ss_pred -cccCCcccEEeccCcc
Q 017525 79 -FKCLVNLKCLNLEYTY 94 (370)
Q Consensus 79 -~~~l~~L~~L~l~~~~ 94 (370)
+..+++|+.|++++|.
T Consensus 100 ~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 100 AFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp TTTTCTTCSEEECCSSC
T ss_pred HhccccCCCEEEeCCCC
Confidence 8899999999999993
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.09 E-value=3.7e-10 Score=91.25 Aligned_cols=93 Identities=18% Similarity=0.266 Sum_probs=81.2
Q ss_pred CcccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchh-hhhccccCCEEeccCCcccccCc-
Q 017525 2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLF-EISKVVSLQHLDLSHSRIESLPI- 77 (370)
Q Consensus 2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~-~~~~l~~L~~L~l~~~~l~~lp~- 77 (370)
+|.++.+|... .++|+.|++++|.|+.+++..+.++++|++|++++|. .+|. .+..+++|++|++++|.++.+|.
T Consensus 18 ~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~ 96 (170)
T 3g39_A 18 GKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRG 96 (170)
T ss_dssp TSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHH
Confidence 57788888753 4899999999999999977778999999999999999 5554 46899999999999999998887
Q ss_pred ccccCCcccEEeccCccc
Q 017525 78 EFKCLVNLKCLNLEYTYG 95 (370)
Q Consensus 78 ~~~~l~~L~~L~l~~~~~ 95 (370)
.+..+++|+.|++++|..
T Consensus 97 ~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 97 AFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp TTTTCTTCCEEECCSSCB
T ss_pred HhcCCCCCCEEEeCCCCC
Confidence 488999999999999943
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.05 E-value=7.3e-10 Score=99.54 Aligned_cols=192 Identities=14% Similarity=0.106 Sum_probs=100.3
Q ss_pred CCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCcc----cccCc-ccccCCcc
Q 017525 14 CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRI----ESLPI-EFKCLVNL 85 (370)
Q Consensus 14 l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l----~~lp~-~~~~l~~L 85 (370)
+++|+.+++.+ .++.++..+|.+|++|+.|+++.+. ..+..|..+.++.++....... ..+.. .+..+.+|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 67777777766 5666666666777777777776665 3334455555555555444211 11111 12222233
Q ss_pred c-EEeccCccc-----------------------ccccC-cccccCCCCCcEEEccccCCCcccccccccCCcchhhhhc
Q 017525 86 K-CLNLEYTYG-----------------------ISRIP-PKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEEL 140 (370)
Q Consensus 86 ~-~L~l~~~~~-----------------------~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l 140 (370)
+ .+.+..... +.... ......+++|+.+++.+| .+..++ ...+
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~-----------~~aF 246 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKT-NATTIP-----------DFTF 246 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTB-CCCEEC-----------TTTT
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCC-Ccceec-----------Hhhh
Confidence 2 222211100 00000 000013677888888877 565433 3456
Q ss_pred ccCCCccEEEEEecchhhhHhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCc-EEEEecCCcccceeccCCCc
Q 017525 141 LGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQ-TLQLTYNDLDEIKIDNGGEV 219 (370)
Q Consensus 141 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~l~~~~~~~~~~~ 219 (370)
..+++|+.+++..+ ++..+...|..+++|+ .+++.. .++.++...+
T Consensus 247 ~~~~~L~~l~l~~n-----------------------------i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF--- 293 (329)
T 3sb4_A 247 AQKKYLLKIKLPHN-----------------------------LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAF--- 293 (329)
T ss_dssp TTCTTCCEEECCTT-----------------------------CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTT---
T ss_pred hCCCCCCEEECCcc-----------------------------cceehHHHhhCChhccEEEEEcc-cceEEchhhh---
Confidence 66677776655532 1111112566667777 777766 5565554433
Q ss_pred cccccccccccCcEEEEecccccccC--cccCCCCccEEe
Q 017525 220 KRVLEISGFHSLKNVYISRSKFRHAT--WLFLAPNLKRVE 257 (370)
Q Consensus 220 ~~~~~~~~~~~L~~L~l~~~~l~~~~--~l~~l~~L~~L~ 257 (370)
..+++|+.|++.+++++.++ .+..+++|+.|+
T Consensus 294 ------~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 294 ------MGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp ------TTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred ------hCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 55777777777766666653 456677777764
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.92 E-value=2.8e-10 Score=103.84 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=16.6
Q ss_pred ccccCCCcEEEEecCCcccceec
Q 017525 192 LASLRHLQTLQLTYNDLDEIKID 214 (370)
Q Consensus 192 l~~l~~L~~L~l~~~~l~~~~~~ 214 (370)
+...++|++|++++|.+++.+..
T Consensus 235 L~~~~~L~~L~Ls~N~i~~~g~~ 257 (372)
T 3un9_A 235 AREHPSLELLHLYFNELSSEGRQ 257 (372)
T ss_dssp HHHCSSCCEEECTTSSCCHHHHH
T ss_pred HHhCCCCCEEeccCCCCCHHHHH
Confidence 44567888888888888766543
No 144
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.91 E-value=2e-08 Score=92.48 Aligned_cols=109 Identities=13% Similarity=0.191 Sum_probs=66.6
Q ss_pred cccccCC--CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccC----
Q 017525 5 IENLVES--PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLP---- 76 (370)
Q Consensus 5 l~~l~~~--~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp---- 76 (370)
++.|... .++.+|+.+.+..+ ++.++..+|.+|.+|+.+++..+- .-...+.++.+|+.+.+..+ +..+.
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF 136 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDSVKMIGRCTFSGCYALKSILLPLM-LKSIGVEAF 136 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCCceEccchhhcccccchhhcccCc-eeeecceee
Confidence 4556655 57888999988754 777888778889999999887554 33445667777776665433 11111
Q ss_pred -------------------cccccCCcccEEeccCcccccccCcccccCCCCCcEEEccc
Q 017525 77 -------------------IEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYE 117 (370)
Q Consensus 77 -------------------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 117 (370)
..+..+.+|+.+.+..+ +..++..+|.++.+|+.+.+..
T Consensus 137 ~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~ 194 (394)
T 4fs7_A 137 KGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPR 194 (394)
T ss_dssp TTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCT
T ss_pred ecccccccccCccccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCC
Confidence 12344556666666543 3344444455666666555543
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.90 E-value=4e-09 Score=95.39 Aligned_cols=99 Identities=17% Similarity=0.236 Sum_probs=77.7
Q ss_pred EEecCCC-cCCCCChHHHhcCCCCcEEEccC-CC--cch-hhhhccccCCEEeccCCcccccCc-ccccCCcccEEeccC
Q 017525 19 TLFLSSN-IFHRVNSDFFQSMASLRVLKWSY-SN--PLL-FEISKVVSLQHLDLSHSRIESLPI-EFKCLVNLKCLNLEY 92 (370)
Q Consensus 19 ~L~l~~~-~i~~~~~~~~~~l~~L~~L~l~~-~~--~~~-~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~ 92 (370)
.++++++ .++.+|. +..+++|++|+|++ |. .++ ..|.++++|++|+|++|.++.++. .++.+++|+.|+|++
T Consensus 12 ~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4577777 7888887 78888899999986 66 444 668888999999999998887665 578889999999998
Q ss_pred cccccccCcccccCCCCCcEEEccccCCCc
Q 017525 93 TYGISRIPPKVISNLKILETLRMYECAALP 122 (370)
Q Consensus 93 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 122 (370)
| .+..+|...+..++ |+.|++.+| .+.
T Consensus 90 N-~l~~~~~~~~~~~~-L~~l~l~~N-~~~ 116 (347)
T 2ifg_A 90 N-ALESLSWKTVQGLS-LQELVLSGN-PLH 116 (347)
T ss_dssp S-CCSCCCSTTTCSCC-CCEEECCSS-CCC
T ss_pred C-ccceeCHHHcccCC-ceEEEeeCC-Ccc
Confidence 8 56677766566666 999999888 554
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.85 E-value=1e-08 Score=92.69 Aligned_cols=91 Identities=20% Similarity=0.186 Sum_probs=70.6
Q ss_pred ccccccCCCCCCCCCEEecCC-CcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCcccccCccc
Q 017525 4 HIENLVESPVCPRLRTLFLSS-NIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESLPIEF 79 (370)
Q Consensus 4 ~l~~l~~~~~l~~L~~L~l~~-~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~lp~~~ 79 (370)
.++.+|....+++|+.|+|++ |.++.+++..|.++++|++|+|++|. ..|..|.++++|++|+|++|.++.+|..+
T Consensus 20 ~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 99 (347)
T 2ifg_A 20 ALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKT 99 (347)
T ss_dssp CCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTT
T ss_pred CCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHH
Confidence 677788766777888888886 88888887668888888888888888 44556788888888888888888887754
Q ss_pred ccCCcccEEeccCcc
Q 017525 80 KCLVNLKCLNLEYTY 94 (370)
Q Consensus 80 ~~l~~L~~L~l~~~~ 94 (370)
.....|+.|++.+|.
T Consensus 100 ~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 100 VQGLSLQELVLSGNP 114 (347)
T ss_dssp TCSCCCCEEECCSSC
T ss_pred cccCCceEEEeeCCC
Confidence 444448888888874
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.83 E-value=3.4e-10 Score=103.30 Aligned_cols=18 Identities=33% Similarity=0.540 Sum_probs=9.1
Q ss_pred ccCCCcEEEEecCCcccc
Q 017525 194 SLRHLQTLQLTYNDLDEI 211 (370)
Q Consensus 194 ~l~~L~~L~l~~~~l~~~ 211 (370)
..++|++|++++|.+++.
T Consensus 209 ~~~~L~~L~Ls~N~i~~~ 226 (372)
T 3un9_A 209 RNRQLQELNVAYNGAGDT 226 (372)
T ss_dssp GCSCCCEEECCSSCCCHH
T ss_pred cCCCcCeEECCCCCCCHH
Confidence 334555555555555443
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.79 E-value=6.3e-08 Score=89.11 Aligned_cols=264 Identities=14% Similarity=0.122 Sum_probs=147.1
Q ss_pred cccccccCC--CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC------------------------cchhhh
Q 017525 3 NHIENLVES--PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN------------------------PLLFEI 56 (370)
Q Consensus 3 n~l~~l~~~--~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~------------------------~~~~~~ 56 (370)
+.++.|+.. .++++|+.+++.++ ++.++...|.+|..|+.+.+...- .....|
T Consensus 80 ~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~~~~~~i~~~aF 158 (394)
T 4fs7_A 80 STVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIPEGVTVIGDEAF 158 (394)
T ss_dssp TTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECCTTCCEECTTTT
T ss_pred CCccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccccccCccccccchhhh
Confidence 346666665 67899999999765 777777778888888877665331 112446
Q ss_pred hccccCCEEeccCCcccccCc-ccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcch
Q 017525 57 SKVVSLQHLDLSHSRIESLPI-EFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRV 135 (370)
Q Consensus 57 ~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 135 (370)
.++.+|+.+.+..+ +..++. .+..+.+|+.+.+..+ +..++..++.++..|+.+.+..+ ... +
T Consensus 159 ~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~-~~~-i----------- 222 (394)
T 4fs7_A 159 ATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNS-LYY-L----------- 222 (394)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTT-CCE-E-----------
T ss_pred cccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCC-ceE-e-----------
Confidence 77889999998764 344444 5778999999999875 66677667889999988877654 211 1
Q ss_pred hhhhcccCCCccEEEEEecchhhhH-hhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceec
Q 017525 136 LVEELLGLEHLSVFTITLNNFHAFQ-RLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKID 214 (370)
Q Consensus 136 ~~~~l~~l~~L~~l~l~~~~~~~~~-~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~ 214 (370)
........+|+.+.+......-.. .+.... .+..+.+... ........+..+..++.+......+.. .
T Consensus 223 -~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~-----~l~~~~~~~~--~~~i~~~~F~~~~~l~~~~~~~~~i~~---~ 291 (394)
T 4fs7_A 223 -GDFALSKTGVKNIIIPDSFTELGKSVFYGCT-----DLESISIQNN--KLRIGGSLFYNCSGLKKVIYGSVIVPE---K 291 (394)
T ss_dssp -CTTTTTTCCCCEEEECTTCCEECSSTTTTCS-----SCCEEEECCT--TCEECSCTTTTCTTCCEEEECSSEECT---T
T ss_pred -ehhhcccCCCceEEECCCceecccccccccc-----cceeEEcCCC--cceeeccccccccccceeccCceeecc---c
Confidence 011122345555555422110000 000111 2333333221 112222345556666666555432211 1
Q ss_pred cCCCccccccccccccCcEEEEeccccccc--CcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccc
Q 017525 215 NGGEVKRVLEISGFHSLKNVYISRSKFRHA--TWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLER 292 (370)
Q Consensus 215 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~ 292 (370)
.+ ..+.+|+.+.+..+ ++.+ .++..+.+|+.++|... ++.+. ...+.++.+|+.
T Consensus 292 ~F---------~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~--v~~I~------------~~aF~~c~~L~~ 347 (394)
T 4fs7_A 292 TF---------YGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL--VEEIG------------KRSFRGCTSLSN 347 (394)
T ss_dssp TT---------TTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT--CCEEC------------TTTTTTCTTCCE
T ss_pred cc---------cccccccccccccc-cceechhhhcCCCCCCEEEeCCc--ccEEh------------HHhccCCCCCCE
Confidence 11 44667777776544 3222 24556677777777532 33231 135556677777
Q ss_pred cccccccccccccCCCc-cCCCcceEeec
Q 017525 293 LILEELKNLKTVHSKAL-PFPHLKEMSVD 320 (370)
Q Consensus 293 L~l~~~~~l~~i~~~~~-~~~~L~~L~l~ 320 (370)
+.+.. +++.|..... .+++|+.+.+.
T Consensus 348 i~lp~--~l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 348 INFPL--SLRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp ECCCT--TCCEECTTTBTTCTTCCEEEEE
T ss_pred EEECc--cccEehHHHhhCCCCCCEEEEC
Confidence 76643 2555544332 35566666663
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.72 E-value=3.2e-07 Score=84.35 Aligned_cols=110 Identities=11% Similarity=0.144 Sum_probs=79.6
Q ss_pred cccccCC--CCCC-CCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC-----c-chhhhhccccCCEEeccCCccccc
Q 017525 5 IENLVES--PVCP-RLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN-----P-LLFEISKVVSLQHLDLSHSRIESL 75 (370)
Q Consensus 5 l~~l~~~--~~l~-~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~-----~-~~~~~~~l~~L~~L~l~~~~l~~l 75 (370)
++.|+.. .++. .|+.+.+... ++.+...+|.+|.+|+.+.+..+. . -...|.++.+|+.+.+..+ ++.+
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I 128 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI 128 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee
Confidence 5566665 4554 5999999764 888888889999999999987652 2 2356677888887776653 4445
Q ss_pred Cc-ccccCCcccEEeccCcccccccCcccccCCCCCcEEEcccc
Q 017525 76 PI-EFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYEC 118 (370)
Q Consensus 76 p~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 118 (370)
+. .+..+.+|+.+.+... +..++..++.++.+|+.+.+..+
T Consensus 129 ~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT
T ss_pred hhhhhhhhcccccccccce--eeeecccceecccccccccccce
Confidence 44 4677888999888753 55566666888888888887654
No 150
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.65 E-value=8.5e-09 Score=82.55 Aligned_cols=86 Identities=19% Similarity=0.286 Sum_probs=39.7
Q ss_pred CCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecc-ccccc--CcccCC----CCccEEeeccCcchHHhhh
Q 017525 197 HLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRS-KFRHA--TWLFLA----PNLKRVEIDNCQDMKEIID 269 (370)
Q Consensus 197 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~--~~l~~l----~~L~~L~L~~~~~~~~~~~ 269 (370)
.|+.|+++++.+++.+.... ..+++|++|+|++| ++++. ..+..+ ++|++|+|++|..+++..-
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L---------~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHM---------EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGG---------TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred eEeEEeCcCCCccHHHHHHh---------cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 45555555555544433222 34555555555555 44442 223322 2455555555554444321
Q ss_pred ccccCCCcccccCCcccccccccccccccccccc
Q 017525 270 SEKFGEVPAEVMANLIPFARLERLILEELKNLKT 303 (370)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~ 303 (370)
..+..+|+|+.|++++|+.+++
T Consensus 133 ------------~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 133 ------------IALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp ------------HHGGGCTTCCEEEEESCTTCCC
T ss_pred ------------HHHhcCCCCCEEECCCCCCCCc
Confidence 1233445555555555554444
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.61 E-value=1e-08 Score=82.06 Aligned_cols=87 Identities=10% Similarity=0.077 Sum_probs=47.2
Q ss_pred ccCcEEEEecccccc--cCcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCccc----cccccccccccccccc
Q 017525 229 HSLKNVYISRSKFRH--ATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIP----FARLERLILEELKNLK 302 (370)
Q Consensus 229 ~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~p~L~~L~l~~~~~l~ 302 (370)
.+|+.|++++|.+++ +..+..+++|++|+|++|..+++... ..+.. .++|+.|+|++|..++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL------------~~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCL------------ERLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHH------------HHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHH------------HHHHhcccccCCCCEEEcCCCCcCC
Confidence 356666666665544 33455566666666666665555421 12222 3456666666666655
Q ss_pred cccCC-CccCCCcceEeecCCCCCCC
Q 017525 303 TVHSK-ALPFPHLKEMSVDRCPLLKK 327 (370)
Q Consensus 303 ~i~~~-~~~~~~L~~L~l~~c~~L~~ 327 (370)
+-... ...+++|+.|++++|++++.
T Consensus 129 D~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 129 DKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 53222 12466666666666666654
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.50 E-value=7.8e-06 Score=74.57 Aligned_cols=76 Identities=11% Similarity=0.047 Sum_probs=38.6
Q ss_pred CCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC-cc-hhhhhccccCCEEeccCCcccccCcccccCCcccEEecc
Q 017525 14 CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN-PL-LFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLE 91 (370)
Q Consensus 14 l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~-~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~ 91 (370)
..+|+.+.+... ++.++..+|.+|.+|+.+.+..+- .+ ..+|.++ +|+.+.+.. +++.+........+|+.+.+.
T Consensus 45 ~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~~L~~i~lp 121 (379)
T 4h09_A 45 RDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVASTVTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGTDLDDFEFP 121 (379)
T ss_dssp GGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTTCCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTCCCSEEECC
T ss_pred ccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCcceEechhhhcCC-CCceEECCc-eeeEeccceeccCCcccccCC
Confidence 355666666543 566666667777777777775443 22 2333343 455555433 233333322222355555554
Q ss_pred C
Q 017525 92 Y 92 (370)
Q Consensus 92 ~ 92 (370)
.
T Consensus 122 ~ 122 (379)
T 4h09_A 122 G 122 (379)
T ss_dssp T
T ss_pred C
Confidence 3
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.48 E-value=2.5e-07 Score=83.72 Aligned_cols=63 Identities=13% Similarity=0.077 Sum_probs=33.6
Q ss_pred ccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEeccccccc------CcccCCCCccEEeeccCc
Q 017525 194 SLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHA------TWLFLAPNLKRVEIDNCQ 262 (370)
Q Consensus 194 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~------~~l~~l~~L~~L~L~~~~ 262 (370)
.+|+|++|++++|.+.+....... ....+++|++|+|+.|.+++. ..+..+++|+.|+|++|.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la------~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFL------ESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHH------HCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCCcCEEeCCCCCCchHHHHHHH------hCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 356777777776665532111110 002456777777766655442 122345667777776665
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.44 E-value=6.9e-06 Score=75.39 Aligned_cols=256 Identities=12% Similarity=0.138 Sum_probs=138.8
Q ss_pred cccccCC--CCCCCCCEEecCCC---cCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCc
Q 017525 5 IENLVES--PVCPRLRTLFLSSN---IFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPI 77 (370)
Q Consensus 5 l~~l~~~--~~l~~L~~L~l~~~---~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~ 77 (370)
++.+... .++++|+.+.+..+ .++.+...+|.+|.+|+.+.+..+- .....+..+.+|+.+.+... ++.++.
T Consensus 75 vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~ 153 (394)
T 4gt6_A 75 VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDSVTEIDSEAFHHCEELDTVTIPEG-VTSVAD 153 (394)
T ss_dssp CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTTCSEECTTTTTTCTTCCEEECCTT-CCEECT
T ss_pred eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCccceehhhhhhhhcccccccccce-eeeecc
Confidence 4555555 67899999998765 3777888888999999888876654 33345677888888888653 333333
Q ss_pred -ccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccC----------------Ccc------
Q 017525 78 -EFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFG----------------DCR------ 134 (370)
Q Consensus 78 -~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~----------------~~~------ 134 (370)
.+..+.+|+.+.+..+ +..+...+|.+ .+|+.+.+... +..+......+ .+.
T Consensus 154 ~~F~~c~~L~~i~~~~~--~~~I~~~aF~~-~~l~~i~ip~~--~~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~ 228 (394)
T 4gt6_A 154 GMFSYCYSLHTVTLPDS--VTAIEERAFTG-TALTQIHIPAK--VTRIGTNAFSECFALSTITSDSESYPAIDNVLYEKS 228 (394)
T ss_dssp TTTTTCTTCCEEECCTT--CCEECTTTTTT-CCCSEEEECTT--CCEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEEC
T ss_pred cceecccccccccccce--eeEeccccccc-cceeEEEECCc--ccccccchhhhccccceecccccccccccceeeccc
Confidence 4556777777777653 44444443433 34555555432 11100000000 000
Q ss_pred ----hhhhhcccCCCccEEEEEecchhhhH-hhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcc
Q 017525 135 ----VLVEELLGLEHLSVFTITLNNFHAFQ-RLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLD 209 (370)
Q Consensus 135 ----~~~~~l~~l~~L~~l~l~~~~~~~~~-~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 209 (370)
...........+..+.+... ...+. ..+. ... .|+.+.+.+ .....+...+..++.|+.+.+. +.++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~--~c~--~L~~i~lp~--~~~~I~~~aF~~c~~L~~i~l~-~~i~ 300 (394)
T 4gt6_A 229 ANGDYALIRYPSQREDPAFKIPNG-VARIETHAFD--SCA--YLASVKMPD--SVVSIGTGAFMNCPALQDIEFS-SRIT 300 (394)
T ss_dssp TTSCEEEEECCTTCCCSEEECCTT-EEEECTTTTT--TCS--SCCEEECCT--TCCEECTTTTTTCTTCCEEECC-TTCC
T ss_pred ccccccccccccccccceEEcCCc-ceEcccceee--ecc--cccEEeccc--ccceecCcccccccccccccCC-Cccc
Confidence 00000001111112211100 00000 0000 000 244444422 2222333467788889988886 3556
Q ss_pred cceeccCCCccccccccccccCcEEEEeccccccc--CcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCcccc
Q 017525 210 EIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHA--TWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPF 287 (370)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (370)
.++...+ ..+.+|+.+.|..+ ++.+ .++..+.+|+.+.|... ++.+. ...+.++
T Consensus 301 ~I~~~aF---------~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s--v~~I~------------~~aF~~C 356 (394)
T 4gt6_A 301 ELPESVF---------AGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS--VTKIP------------ESAFSNC 356 (394)
T ss_dssp EECTTTT---------TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT--CCBCC------------GGGGTTC
T ss_pred ccCceee---------cCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc--cCEEh------------HhHhhCC
Confidence 6654443 56888999988654 4433 35677889999998643 33332 1367788
Q ss_pred ccccccccccc
Q 017525 288 ARLERLILEEL 298 (370)
Q Consensus 288 p~L~~L~l~~~ 298 (370)
++|+.+.+.+.
T Consensus 357 ~~L~~i~~~~~ 367 (394)
T 4gt6_A 357 TALNNIEYSGS 367 (394)
T ss_dssp TTCCEEEESSC
T ss_pred CCCCEEEECCc
Confidence 99999988774
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.30 E-value=5.1e-07 Score=73.69 Aligned_cols=115 Identities=17% Similarity=0.101 Sum_probs=71.0
Q ss_pred HHhcCCCCcEEEccCC-C-------cchhhhhccccCCEEeccCCccc-----ccCcccccCCcccEEeccCcccccc--
Q 017525 34 FFQSMASLRVLKWSYS-N-------PLLFEISKVVSLQHLDLSHSRIE-----SLPIEFKCLVNLKCLNLEYTYGISR-- 98 (370)
Q Consensus 34 ~~~~l~~L~~L~l~~~-~-------~~~~~~~~l~~L~~L~l~~~~l~-----~lp~~~~~l~~L~~L~l~~~~~~~~-- 98 (370)
++...+.|++|++++| . .+...+...++|++|++++|.++ .+...+...++|++|++++| .++.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g 109 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSG 109 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHH
Confidence 3556777777777777 4 23444555677778888877764 23344556677788888777 3332
Q ss_pred ---cCcccccCCCCCcEEEc--cccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhh
Q 017525 99 ---IPPKVISNLKILETLRM--YECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHA 158 (370)
Q Consensus 99 ---~~~~~~~~l~~L~~L~l--~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~ 158 (370)
+... +...++|++|++ .+| .++... .......+...+.|+.|+++.|.+..
T Consensus 110 ~~~l~~~-L~~n~~L~~L~L~~~~N-~i~~~g-------~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 110 ILALVEA-LQSNTSLIELRIDNQSQ-PLGNNV-------EMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHHHG-GGGCSSCCEEECCCCSS-CCCHHH-------HHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHH-HHhCCCceEEEecCCCC-CCCHHH-------HHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 2222 566677888888 667 555211 11244556666778888887776644
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.30 E-value=6e-07 Score=73.23 Aligned_cols=108 Identities=11% Similarity=0.062 Sum_probs=77.7
Q ss_pred CCCCCCCEEecCCC-cCCCC----ChHHHhcCCCCcEEEccCCC-------cchhhhhccccCCEEeccCCccc-----c
Q 017525 12 PVCPRLRTLFLSSN-IFHRV----NSDFFQSMASLRVLKWSYSN-------PLLFEISKVVSLQHLDLSHSRIE-----S 74 (370)
Q Consensus 12 ~~l~~L~~L~l~~~-~i~~~----~~~~~~~l~~L~~L~l~~~~-------~~~~~~~~l~~L~~L~l~~~~l~-----~ 74 (370)
...+.|+.|++++| .++.- -...+...++|++|++++|. .+...+...++|++|++++|.++ .
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 46788999999998 88632 11235667889999999998 23445566688999999999886 3
Q ss_pred cCcccccCCcccEEec--cCcccccc-----cCcccccCCCCCcEEEccccCCCc
Q 017525 75 LPIEFKCLVNLKCLNL--EYTYGISR-----IPPKVISNLKILETLRMYECAALP 122 (370)
Q Consensus 75 lp~~~~~l~~L~~L~l--~~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~ 122 (370)
+...+...++|++|++ ++| .++. +.. .+...++|++|++++| .++
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~-~L~~n~~L~~L~L~~n-~i~ 164 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIAN-MLEKNTTLLKFGYHFT-QQG 164 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHH-HHHHCSSCCEEECCCS-SHH
T ss_pred HHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHH-HHHhCCCcCEEeccCC-CCC
Confidence 4556777888999999 767 4432 222 2556688999999888 554
No 157
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.28 E-value=4.6e-06 Score=75.42 Aligned_cols=62 Identities=13% Similarity=0.141 Sum_probs=39.9
Q ss_pred ccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEeccccccc--CcccC-CCCccEEeeccCc
Q 017525 194 SLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHA--TWLFL-APNLKRVEIDNCQ 262 (370)
Q Consensus 194 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~l~~-l~~L~~L~L~~~~ 262 (370)
.+++|++|+++.|.+++.+...+.. ....+++|+.|++++|.+++. ..+.. + ...++++.+.
T Consensus 277 ~~~~L~~LdLs~n~L~d~G~~~L~~-----~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 277 ILPQLETMDISAGVLTDEGARLLLD-----HVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp SGGGCSEEECCSSCCBHHHHHHHHT-----THHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred cCCCCCEEECCCCCCChHHHHHHHh-----hcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 4678999999999888754322111 114678999999999877653 22222 2 3557777655
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.92 E-value=1.6e-05 Score=68.35 Aligned_cols=101 Identities=18% Similarity=0.097 Sum_probs=67.3
Q ss_pred CCCCE--EecCCCcCCCC---ChHHHhcCCCCcEEEccCCC-----cchhhhhccccCCEEeccCCcccccCcccccCC-
Q 017525 15 PRLRT--LFLSSNIFHRV---NSDFFQSMASLRVLKWSYSN-----PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLV- 83 (370)
Q Consensus 15 ~~L~~--L~l~~~~i~~~---~~~~~~~l~~L~~L~l~~~~-----~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~- 83 (370)
+.|+. ++++.|....+ ......++++|++|+|++|. .++..+..+++|++|+|++|.++.+. .+..+.
T Consensus 141 p~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~ 219 (267)
T 3rw6_A 141 PDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKG 219 (267)
T ss_dssp HHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTT
T ss_pred cchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhccc
Confidence 34444 55565533222 22223568899999999998 23456678999999999999887663 334444
Q ss_pred -cccEEeccCcccccccC------cccccCCCCCcEEEcc
Q 017525 84 -NLKCLNLEYTYGISRIP------PKVISNLKILETLRMY 116 (370)
Q Consensus 84 -~L~~L~l~~~~~~~~~~------~~~~~~l~~L~~L~l~ 116 (370)
+|+.|++++|...+.++ ..++..+++|+.||-.
T Consensus 220 l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 220 LKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp SCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSC
T ss_pred CCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCc
Confidence 89999999985544343 2346788999988643
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.82 E-value=1.9e-05 Score=67.82 Aligned_cols=108 Identities=20% Similarity=0.146 Sum_probs=68.9
Q ss_pred HhcCCCCcE--EEccCCC--cchh----hhhccccCCEEeccCCcccccC---cccccCCcccEEeccCcccccccCc-c
Q 017525 35 FQSMASLRV--LKWSYSN--PLLF----EISKVVSLQHLDLSHSRIESLP---IEFKCLVNLKCLNLEYTYGISRIPP-K 102 (370)
Q Consensus 35 ~~~l~~L~~--L~l~~~~--~~~~----~~~~l~~L~~L~l~~~~l~~lp---~~~~~l~~L~~L~l~~~~~~~~~~~-~ 102 (370)
+...+.|.. ++++.+. .++. ...++++|+.|+|++|+++.++ ..+..+++|+.|+|++| .+..+.. .
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~ 215 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELD 215 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhh
Confidence 344444554 5666665 3332 2256899999999999987554 55678999999999999 4444421 2
Q ss_pred cccCCCCCcEEEccccCCCcc-cccccccCCcchhhhhcccCCCccEEE
Q 017525 103 VISNLKILETLRMYECAALPQ-ARDSILFGDCRVLVEELLGLEHLSVFT 150 (370)
Q Consensus 103 ~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~L~~l~ 150 (370)
.+..+ +|++|++.+| .+.. ++ +........+..+++|+.|+
T Consensus 216 ~l~~l-~L~~L~L~~N-pl~~~~~-----~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 216 KIKGL-KLEELWLDGN-SLCDTFR-----DQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GGTTS-CCSEEECTTS-TTGGGCS-----SHHHHHHHHHHHCTTCCEES
T ss_pred hcccC-CcceEEccCC-cCccccC-----cchhHHHHHHHHCcccCeEC
Confidence 23444 8999999999 6642 21 00011123456677777765
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.43 E-value=0.00032 Score=63.79 Aligned_cols=125 Identities=15% Similarity=0.229 Sum_probs=81.0
Q ss_pred CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCc-ccccCCcccEE
Q 017525 12 PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPI-EFKCLVNLKCL 88 (370)
Q Consensus 12 ~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L 88 (370)
..+.+|+.+.+..+ +..+....+.++..|+.+.+..+- .-...+.++.+|+.+.+.. .++.++. .+..|.+|+.+
T Consensus 214 ~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i 291 (379)
T 4h09_A 214 SYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKV 291 (379)
T ss_dssp TTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEE
T ss_pred ccccccceeeeccc-eeEEccccccCCccceEEEcCCCccEeCccccceeehhccccccc-cceeccccccccccccccc
Confidence 45677777777654 555666667788888888876654 3334566677788777754 3554544 46677888888
Q ss_pred eccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEE
Q 017525 89 NLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTIT 152 (370)
Q Consensus 89 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~ 152 (370)
.+.++ .+..++..+|.++.+|+.+.+..+ +..+ ...++..+++|+.+.+.
T Consensus 292 ~l~~~-~i~~I~~~aF~~c~~L~~i~lp~~--l~~I-----------~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 292 VMDNS-AIETLEPRVFMDCVKLSSVTLPTA--LKTI-----------QVYAFKNCKALSTISYP 341 (379)
T ss_dssp EECCT-TCCEECTTTTTTCTTCCEEECCTT--CCEE-----------CTTTTTTCTTCCCCCCC
T ss_pred ccccc-ccceehhhhhcCCCCCCEEEcCcc--ccEE-----------HHHHhhCCCCCCEEEEC
Confidence 88765 566666666888888888877643 3322 23455666667666654
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.28 E-value=0.0046 Score=50.17 Aligned_cols=114 Identities=11% Similarity=0.087 Sum_probs=69.4
Q ss_pred HhcCCCCcEEEccCC-C-------cchhhhhccccCCEEeccCCccc-----ccCcccccCCcccEEeccCcccccc---
Q 017525 35 FQSMASLRVLKWSYS-N-------PLLFEISKVVSLQHLDLSHSRIE-----SLPIEFKCLVNLKCLNLEYTYGISR--- 98 (370)
Q Consensus 35 ~~~l~~L~~L~l~~~-~-------~~~~~~~~l~~L~~L~l~~~~l~-----~lp~~~~~l~~L~~L~l~~~~~~~~--- 98 (370)
..+-+.|++|+|+++ . .+...+..-+.|+.|+|++|.+. .+...+..-+.|+.|+|++| .++.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga 115 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPELL 115 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHH
Confidence 455677888888875 3 23344555677888888888775 34445566677888888887 4432
Q ss_pred --cCcccccCCCCCcEEEccccC--CCcccccccccCCcchhhhhcccCCCccEEEEEecchh
Q 017525 99 --IPPKVISNLKILETLRMYECA--ALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFH 157 (370)
Q Consensus 99 --~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~ 157 (370)
+... +..=+.|++|+++++. .++.. ........+..-+.|+.+++..+...
T Consensus 116 ~ala~a-L~~N~tL~~L~L~n~~~~~ig~~-------g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 116 ARLLRS-TLVTQSIVEFKADNQRQSVLGNQ-------VEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHH-TTTTCCCSEEECCCCSSCCCCHH-------HHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHH-HhhCCceeEEECCCCcCcCcCHH-------HHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 1222 3444568888887551 12210 01134556666678888888776543
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.19 E-value=0.0078 Score=45.43 Aligned_cols=43 Identities=14% Similarity=0.209 Sum_probs=27.3
Q ss_pred cccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC
Q 017525 7 NLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN 50 (370)
Q Consensus 7 ~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~ 50 (370)
.+|.. -.++|+.|+|++|.|+.++..+|..+++|++|+|++|+
T Consensus 24 ~vP~~-lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 24 SLPTA-FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TSCSC-CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred cCCCC-CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 55542 22357777777777777766666666666666666665
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.96 E-value=0.012 Score=44.29 Aligned_cols=53 Identities=25% Similarity=0.371 Sum_probs=43.2
Q ss_pred CEEeccCCccc--ccCcccccCCcccEEeccCcccccccCcccccCCCCCcEEEcccc
Q 017525 63 QHLDLSHSRIE--SLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYEC 118 (370)
Q Consensus 63 ~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 118 (370)
..++.++.+++ .+|..+ -++|++|+|++| .+..++.++|..+++|+.|++.+|
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGN-NLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCC-cCCccChhhhhhccccCEEEecCC
Confidence 46788888887 888643 246899999998 778888887889999999999988
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.79 E-value=0.013 Score=47.54 Aligned_cols=79 Identities=9% Similarity=0.021 Sum_probs=36.2
Q ss_pred CCCCCEEecCCC-cCCCC----ChHHHhcCCCCcEEEccCCC-------cchhhhhccccCCEEeccCCccc-----ccC
Q 017525 14 CPRLRTLFLSSN-IFHRV----NSDFFQSMASLRVLKWSYSN-------PLLFEISKVVSLQHLDLSHSRIE-----SLP 76 (370)
Q Consensus 14 l~~L~~L~l~~~-~i~~~----~~~~~~~l~~L~~L~l~~~~-------~~~~~~~~l~~L~~L~l~~~~l~-----~lp 76 (370)
-+.|+.|+|+++ .|..- -...+..-..|+.|+|++|. .+...+..-+.|++|+|++|.|+ .+-
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 345555555553 44321 11123444555555555555 22233333455555555555553 222
Q ss_pred cccccCCcccEEeccC
Q 017525 77 IEFKCLVNLKCLNLEY 92 (370)
Q Consensus 77 ~~~~~l~~L~~L~l~~ 92 (370)
..+..-+.|+.|++++
T Consensus 120 ~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHTTTTCCCSEEECCC
T ss_pred HHHhhCCceeEEECCC
Confidence 2333444455555554
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=74.51 E-value=2.9 Score=29.45 Aligned_cols=43 Identities=14% Similarity=0.076 Sum_probs=18.7
Q ss_pred CCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccC
Q 017525 27 FHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSH 69 (370)
Q Consensus 27 i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~ 69 (370)
++.+....|.+|..|+.+.+-.+- .-...|.+|.+|+.+.+.+
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPNIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTTSSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCchheEcHHHHhccCCccEEEEcC
Confidence 334444444444444444444333 2223344445555444443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=62.51 E-value=5.9 Score=27.78 Aligned_cols=47 Identities=13% Similarity=0.175 Sum_probs=33.7
Q ss_pred cccccccCC--CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC
Q 017525 3 NHIENLVES--PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN 50 (370)
Q Consensus 3 n~l~~l~~~--~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~ 50 (370)
..++.|... .++.+|+.+.+..+ ++.+....|.+|.+|+.+.+....
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCSC
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCCC
Confidence 346666666 67788888888764 667777777888888888877653
Done!