BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017526
(370 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GDJ|A Chain A, A Subtype N10 Neuraminidase-Like Protein Of ALITTLE
YELLOW-Shouldered BatGUATEMALA0602010
pdb|4GDJ|B Chain B, A Subtype N10 Neuraminidase-Like Protein Of ALITTLE
YELLOW-Shouldered BatGUATEMALA0602010
pdb|4GDJ|C Chain C, A Subtype N10 Neuraminidase-Like Protein Of ALITTLE
YELLOW-Shouldered BatGUATEMALA0602010
pdb|4GDJ|D Chain D, A Subtype N10 Neuraminidase-Like Protein Of ALITTLE
YELLOW-Shouldered BatGUATEMALA0602010
Length = 373
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 13/105 (12%)
Query: 156 RCLTLHRHCFALITDGVDFHQEAY--FMTPQYLKMMWKR-----IDFLRTVLEMGYNFIF 208
C+ + CF L++DG + +Q + + WK+ I+F + N I
Sbjct: 151 ECICVEGSCFVLVSDGPNVNQSVHRIYELQNGTVQRWKQLNTTGINFEYSTCYTINNLIK 210
Query: 209 TDADIMW--FRDPFPRFYPDADFQVACDHFLGSPDDVQNRPNGGF 251
+W + P RF D ++Q+ + G+P D P GG
Sbjct: 211 CTGTNLWNDAKRPLLRFTKDLNYQIV-EPCNGAPTDF---PRGGL 251
>pdb|1F1S|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
Lyase At 2.1 Angstrom Resolution.
pdb|1I8Q|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
Lyase Complexed With Enzyme Product, Unsaturated
Disaccharide Hyaluronan
pdb|1LXM|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
Lyase Complexed With Hexasaccharide Unit Of Hyaluronan
Length = 814
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 205 NFIFTDADIMWFRDPFPRFYPDADF 229
N FTDA+I + DP F PDA++
Sbjct: 220 NNYFTDAEIKTYTDPIEHFVPDAEY 244
>pdb|3O98|A Chain A, Glutathionylspermidine SynthetaseAMIDASE C59A COMPLEX WITH
ADP AND Gsp
pdb|3O98|B Chain B, Glutathionylspermidine SynthetaseAMIDASE C59A COMPLEX WITH
ADP AND Gsp
Length = 619
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 180 FMTPQYLKMMWKRIDFLRTVLEMGYNFIFTDADIMW 215
++ +Y+ W+ ++F R L + Y +FTD + W
Sbjct: 47 YIDDEYMGHKWQAVEFARRFLFLNYGVVFTDVGMAW 82
>pdb|3A2Y|A Chain A, E. Coli Gsp Amidase C59a Complexed With Gsp
Length = 197
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 180 FMTPQYLKMMWKRIDFLRTVLEMGYNFIFTDADIMW 215
++ +Y+ W+ ++F R L + Y +FTD + W
Sbjct: 47 YIDDEYMGHKWQAVEFARRFLFLNYGVVFTDVGMAW 82
>pdb|2YW5|A Chain A, Solution Structure Of The Bromodomain From Human
Bromodomain Containing Protein 3
Length = 138
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 12/81 (14%)
Query: 263 FYRFWYASRETYPGYHDQDVLNIIKFDPSIMDIGLKIKFLDTAYFGGLCEPSEDFNVVCT 322
FY+ A + P YH IIK + MD+G K L+ Y+ E +DFN T
Sbjct: 42 FYQPVDAIKLNLPDYHK-----IIK---NPMDMGTIKKRLENNYYWSASECMQDFN---T 90
Query: 323 MHANCCYGLNSKLIDLRIMLQ 343
M N CY N D+ +M Q
Sbjct: 91 MFTN-CYIYNKPTDDIVLMAQ 110
>pdb|2NXB|A Chain A, Crystal Structure Of Human Bromodomain Containing Protein
3 (Brd3)
pdb|2NXB|B Chain B, Crystal Structure Of Human Bromodomain Containing Protein
3 (Brd3)
pdb|3S91|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd3
In Complex With The Inhibitor Jq1
Length = 123
Score = 30.0 bits (66), Expect = 1.9, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 38/81 (46%), Gaps = 12/81 (14%)
Query: 263 FYRFWYASRETYPGYHDQDVLNIIKFDPSIMDIGLKIKFLDTAYFGGLCEPSEDFNVVCT 322
FY+ A + P YH IIK +P MD+G K L+ Y+ E +DFN T
Sbjct: 38 FYQPVDAIKLNLPDYH-----KIIK-NP--MDMGTIKKRLENNYYWSASECMQDFN---T 86
Query: 323 MHANCCYGLNSKLIDLRIMLQ 343
M N CY N D+ +M Q
Sbjct: 87 MFTN-CYIYNKPTDDIVLMAQ 106
>pdb|3LEH|A Chain A, The Crystal Structure Of Smu.943c From Streptococcus
Mutans Ua159
Length = 425
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Query: 147 IALDQKAFERCLTLHRHCFALITDGVDFHQEAYFMTPQYLKMMW---KRIDFLRTV---L 200
IA+ K R L LH A D +DF + Y TP Y+ M+ + +D L+T
Sbjct: 192 IAMLVKKDPRILILHDETLAQTRDIMDFWRPNYTTTP-YVNGMYSTKQYLDMLKTTWAEY 250
Query: 201 EMGYNFIFTDADIMWFRDPFPRF 223
+ ++ TD F PFP+
Sbjct: 251 QKRFDVSLTDFAAFCFHLPFPKL 273
>pdb|3SQZ|A Chain A, Crystal Structure Of Hmg_coa Synthase Complexed With Coa
Length = 389
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Query: 147 IALDQKAFERCLTLHRHCFALITDGVDFHQEAYFMTPQYLKMMW---KRIDFLRTV---L 200
IA+ K R L LH A D +DF + Y TP Y+ M+ + +D L+T
Sbjct: 159 IAMLVKKDPRILILHDETLAQTRDIMDFWRPNYTTTP-YVNGMYSTKQYLDMLKTTWAEY 217
Query: 201 EMGYNFIFTDADIMWFRDPFPRF 223
+ ++ TD F PFP+
Sbjct: 218 QKRFDVSLTDFAAFCFHLPFPKL 240
>pdb|2L5E|A Chain A, Complex Between Bd1 Of Brd3 And Gata-1 C-Tail
Length = 128
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 12/81 (14%)
Query: 263 FYRFWYASRETYPGYHDQDVLNIIKFDPSIMDIGLKIKFLDTAYFGGLCEPSEDFNVVCT 322
FY+ A + P YH IIK + MD+G K L+ Y+ E +DFN T
Sbjct: 40 FYQPVDAIKLNLPDYHK-----IIK---NPMDMGTIKKRLENNYYWSASECMQDFN---T 88
Query: 323 MHANCCYGLNSKLIDLRIMLQ 343
M N CY N D+ +M Q
Sbjct: 89 MFTN-CYIYNKPTDDIVLMAQ 108
>pdb|2IO7|A Chain A, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE INCOMPLEX WITH MG2+ AND AMPPNP
pdb|2IO7|B Chain B, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE INCOMPLEX WITH MG2+ AND AMPPNP
pdb|2IO8|A Chain A, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE INCOMPLEX WITH MG2+ AND ADP
pdb|2IO8|B Chain B, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE INCOMPLEX WITH MG2+ AND ADP
pdb|2IO9|A Chain A, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE INCOMPLEX WITH MG2+ ,GSH AND ADP
pdb|2IO9|B Chain B, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE INCOMPLEX WITH MG2+ ,GSH AND ADP
pdb|2IOA|A Chain A, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE INCOMPLEX WITH MG2+ AND ADP AND
Phosphinate Inhibitor
pdb|2IOA|B Chain B, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE INCOMPLEX WITH MG2+ AND ADP AND
Phosphinate Inhibitor
pdb|2IOB|A Chain A, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE APO PROTEIN
pdb|2IOB|B Chain B, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE APO PROTEIN
Length = 619
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 180 FMTPQYLKMMWKRIDFLRTVLEMGYNFIFTDADIMW 215
++ +Y+ W+ ++F R L + Y +FTD + W
Sbjct: 47 YIDDEYMGHKWQCVEFARRFLFLNYGVVFTDVGMAW 82
>pdb|3A2Z|A Chain A, E. Coli Gsp Amidase Cys59 Sulfenic Acid
pdb|3A30|A Chain A, E. Coli Gsp Amidase C59 Acetate Modification
Length = 197
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 180 FMTPQYLKMMWKRIDFLRTVLEMGYNFIFTDADIMW 215
++ +Y+ W+ ++F R L + Y +FTD + W
Sbjct: 47 YIDDEYMGHKWQCVEFARRFLFLNYGVVFTDVGMAW 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.140 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,211,304
Number of Sequences: 62578
Number of extensions: 423013
Number of successful extensions: 955
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 950
Number of HSP's gapped (non-prelim): 11
length of query: 370
length of database: 14,973,337
effective HSP length: 100
effective length of query: 270
effective length of database: 8,715,537
effective search space: 2353194990
effective search space used: 2353194990
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)