Query 017526
Match_columns 370
No_of_seqs 165 out of 333
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 15:51:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017526.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017526hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ll2_A Glycogenin-1; protein-s 97.9 7.6E-05 2.6E-09 72.8 11.3 161 108-288 6-172 (333)
2 3u2u_A Glycogenin-1, GN-1, GN1 97.3 0.00054 1.8E-08 64.8 8.4 161 107-288 5-173 (263)
3 1g9r_A Glycosyl transferase; a 97.0 0.0013 4.5E-08 62.9 7.3 181 109-306 3-207 (311)
4 3tzt_A Glycosyl transferase fa 96.6 0.007 2.4E-07 57.1 9.5 202 109-326 8-246 (276)
5 2c0n_A A197; thermophil protei 43.4 17 0.00058 32.8 3.5 67 152-233 16-88 (203)
6 1fo8_A Alpha-1,3-mannosyl-glyc 28.4 3.2E+02 0.011 26.1 10.1 110 107-224 5-121 (343)
7 3e61_A Putative transcriptiona 19.2 3.3E+02 0.011 23.4 7.7 58 141-205 65-123 (277)
8 3l9k_W Dynein intermediate cha 17.2 57 0.0019 21.6 1.5 30 178-207 8-37 (38)
9 3p0b_A TT1467 protein; glycosi 15.2 58 0.002 33.5 1.8 30 193-222 226-255 (540)
10 1qwg_A PSL synthase;, (2R)-pho 13.4 3E+02 0.01 25.4 5.9 45 151-208 88-132 (251)
No 1
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=97.86 E-value=7.6e-05 Score=72.83 Aligned_cols=161 Identities=14% Similarity=0.106 Sum_probs=91.1
Q ss_pred EEEEEcCccccCCChhHHHHHHhhhhccCcccccccEEEEEec---HHHHHHHHhcCccEEEeecCCcCCccccccccHH
Q 017526 108 VILTTLNEAWAAPDSVIDLFLESFRIGDGTRKLLNHLVIIALD---QKAFERCLTLHRHCFALITDGVDFHQEAYFMTPQ 184 (370)
Q Consensus 108 VIlT~~N~a~a~pgs~ldlfLeS~r~g~~t~~ll~hllVvAlD---~~a~~~c~~~~~~c~~~~~~~~d~s~~~~ygS~~ 184 (370)
-|+.++|.+|... +-..+.|++... +. ..++|+..| ++..+.+++.+........-..............
T Consensus 6 ~vt~~~d~~Yl~~---a~vl~~SL~~~~-s~---~~l~vlv~~~is~~~~~~L~~~~~~v~~v~~l~~~~~~~~~~~~~~ 78 (333)
T 1ll2_A 6 FVTLTTNDAYAKG---ALVLGSSLKQHR-TS---RRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTLMKRP 78 (333)
T ss_dssp EEEEESSHHHHHH---HHHHHHHHHHTT-CC---SEEEEEECTTSCHHHHHHHHHHCSEEEECCTTSTTSTTHHHHHHCG
T ss_pred EEEEEeCHHHHHH---HHHHHHHHHHhC-CC---CCEEEEEcCCCCHHHHHHHHHhCCEEEEEeecCCcchhhccccccc
Confidence 3444578888532 222456776531 21 345555443 5667777777765444432111111000000011
Q ss_pred HHHHHHHHHHHHHHHHHcCc-eEEEecceEEeccCCccCcCCCCCeeEeccCCCCCCCCCCCCCceEEEEEeeCHHHHHH
Q 017526 185 YLKMMWKRIDFLRTVLEMGY-NFIFTDADIMWFRDPFPRFYPDADFQVACDHFLGSPDDVQNRPNGGFNHVKSNNRSIEF 263 (370)
Q Consensus 185 f~~m~w~K~~~l~~vL~lGy-~vLfsDvDVVWlRNP~p~f~~~aDi~is~D~~~g~~~~~~~~~NsGf~yvRst~rti~f 263 (370)
....++.|+.+.. + ..| .||+.|+|++.++|+-+.|..+ .+....|. ..+..+|+|++.++++..+-
T Consensus 79 ~~~~t~~Kl~i~~-l--~~ydrvlYLDaD~lv~~di~eLf~~~-~~aAv~d~------~~~~~fNsGvmlin~~~~~~-- 146 (333)
T 1ll2_A 79 ELGVTLTKLHCWS-L--TQYSKCVFMDADTLVLANIDDLFERE-ELSAAPDP------GWPDCFNSGVFVYQPSVETY-- 146 (333)
T ss_dssp GGHHHHHHGGGGG-C--TTCSEEEEECTTEEECSCCGGGGGSC-SSEEEECS------SSTTSEEEEEEEECCCHHHH--
T ss_pred chHHHHHHHHHhH-h--cCCCeEEEEeCCEEeccCHHHHhCCC-ceeEEecC------CCCcceeeeEEEEeCCHHHH--
Confidence 2246777877664 2 345 5999999999999998888544 33333342 12457899999999985443
Q ss_pred HHHHHHHHhcCC--CCCchHHHHHHHc
Q 017526 264 YRFWYASRETYP--GYHDQDVLNIIKF 288 (370)
Q Consensus 264 ~~~W~~~~~~~p--~~~DQ~vfN~ll~ 288 (370)
+.+.+...... ...||++||.+..
T Consensus 147 -~~l~~~~~~~~~~~~~DQ~~LN~~f~ 172 (333)
T 1ll2_A 147 -NQLLHVASEQGSFDGGDQGLLNTFFN 172 (333)
T ss_dssp -HHHHHHHHHTCCTTSSHHHHHHHHTT
T ss_pred -HHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 33333322221 3479999999884
No 2
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=97.32 E-value=0.00054 Score=64.84 Aligned_cols=161 Identities=16% Similarity=0.174 Sum_probs=91.0
Q ss_pred eEEEEE-cCccccCCChhHHHHHHhhhhccCcccccccEEEEE---ecHHHHHHHHhcCccEEEeecCCcCCccc---cc
Q 017526 107 TVILTT-LNEAWAAPDSVIDLFLESFRIGDGTRKLLNHLVIIA---LDQKAFERCLTLHRHCFALITDGVDFHQE---AY 179 (370)
Q Consensus 107 tVIlT~-~N~a~a~pgs~ldlfLeS~r~g~~t~~ll~hllVvA---lD~~a~~~c~~~~~~c~~~~~~~~d~s~~---~~ 179 (370)
...+|. +|.+|... .-..+.|++... +. ..++|+. ++++..+.+++.+......+. .+.... ..
T Consensus 5 ~AyvTl~td~~Yl~g---a~vL~~SL~~~~-s~---~~lvvLvt~~vs~~~~~~L~~~~~~vi~V~~--l~~~~~~~~~~ 75 (263)
T 3u2u_A 5 QAFVTLTTNDAYAKG---ALVLGSSLKQHR-TT---RRLVVLATPQVSDSMRKVLETVFDEVIMVDV--LDSGDSAHLTL 75 (263)
T ss_dssp EEEEEEESSHHHHHH---HHHHHHHHHHTT-CC---SEEEEEECTTSCHHHHHHHHHHSSEEEECCC--CCCCCHHHHHH
T ss_pred eEEEEEEECHHHHHH---HHHHHHHHHHhC-CC---CCEEEEecCCCCHHHHHHHHHcCCeEEEeee--cCCcchhhhhh
Confidence 334443 57777531 223456777532 22 1234443 356777888887765544432 221100 01
Q ss_pred cccHHHHHHHHHHHHHHHHHHHcCc-eEEEecceEEeccCCccCcCCCCCeeEeccCCCCCCCCCCCCCceEEEEEeeCH
Q 017526 180 FMTPQYLKMMWKRIDFLRTVLEMGY-NFIFTDADIMWFRDPFPRFYPDADFQVACDHFLGSPDDVQNRPNGGFNHVKSNN 258 (370)
Q Consensus 180 ygS~~f~~m~w~K~~~l~~vL~lGy-~vLfsDvDVVWlRNP~p~f~~~aDi~is~D~~~g~~~~~~~~~NsGf~yvRst~ 258 (370)
...+.+ ..++.|..+... + .| .||+.|+|++.++|.-+.|..+ .+....|.. .+..+|+|++.+.++.
T Consensus 76 ~~rp~~-~~~~~kl~~~~l-~--~~~~vlylD~D~~v~~~~~~Lf~~~-~~aA~~d~~------~~~~fNsGv~li~p~~ 144 (263)
T 3u2u_A 76 MKRPEL-GVTLTKLHCWSL-T--QYSKCVFMDADTLVLANIDDLFDRE-ELSAAPDPG------WPDCFNSGVFVYQPSV 144 (263)
T ss_dssp TTCTTG-GGGGGGGGGGGC-T--TCSEEEEECTTEEECSCCGGGGGSC-SSEEEECTT------STTSEEEEEEEECCCH
T ss_pred hcCcch-hHHhHHHHhccc-c--CcceEEEEcCCEeeccCHHHHhCCC-cceEeccCC------CCccccCeEEEEcccH
Confidence 112222 345667665542 2 46 4999999999999998888654 344444421 2357899999999986
Q ss_pred HHHHHHHHHHHHHhcCCCCCchHHHHHHHc
Q 017526 259 RSIEFYRFWYASRETYPGYHDQDVLNIIKF 288 (370)
Q Consensus 259 rti~f~~~W~~~~~~~p~~~DQ~vfN~ll~ 288 (370)
.+-+-+-+........ ...||++||.+..
T Consensus 145 ~~~~~l~~~~~~~~~~-~~~DQd~LN~~f~ 173 (263)
T 3u2u_A 145 ETYNQLLHLASEQGSF-DGGDQGILNTFFS 173 (263)
T ss_dssp HHHHHHHHHHHHHCCT-TSSHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCC-CcccHHHHHHHhc
Confidence 5433333332222222 3479999999994
No 3
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=96.96 E-value=0.0013 Score=62.91 Aligned_cols=181 Identities=13% Similarity=0.152 Sum_probs=93.6
Q ss_pred EEEEcCccccCCChhHHHHHHhh-hhccCcccccccEEEEEec--HHHHHHHHhc----CccEEEeecCCcCCccccccc
Q 017526 109 ILTTLNEAWAAPDSVIDLFLESF-RIGDGTRKLLNHLVIIALD--QKAFERCLTL----HRHCFALITDGVDFHQEAYFM 181 (370)
Q Consensus 109 IlT~~N~a~a~pgs~ldlfLeS~-r~g~~t~~ll~hllVvAlD--~~a~~~c~~~----~~~c~~~~~~~~d~s~~~~yg 181 (370)
|+.++|.+|..+ +-..+.|+ ... .... -++.|++.| ++..+.+++. +............+......
T Consensus 3 I~~~~d~~Y~~~---~~vli~Sl~l~~-~~~~--~~f~il~~~ls~~~~~~L~~~~~~~~~~i~~~~~~~~~~~~~~~~- 75 (311)
T 1g9r_A 3 IVFAADDNYAAY---LCVAAKSVEAAH-PDTE--IRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPEDFAGFPLN- 75 (311)
T ss_dssp EEEEECGGGHHH---HHHHHHHHHHTC-TTSC--CEEEEEESSCCHHHHHHHHHHSGGGTTTEEEEECCGGGGTTSCCC-
T ss_pred EEEECCHhHHHH---HHHHHHHHHHHc-CCCC--ceEEEEECCCCHHHHHHHHHHHHHcCCEEEEEEcCHHHHhcCccc-
Confidence 566688888542 23356677 321 1122 144555544 6666666654 43322222221112110000
Q ss_pred cHHHHHHHHHHHHHHHHHHHcCc-eEEEecceEEeccCCccCcCC---CCCeeEeccCCCC-CC--------CCCCCCCc
Q 017526 182 TPQYLKMMWKRIDFLRTVLEMGY-NFIFTDADIMWFRDPFPRFYP---DADFQVACDHFLG-SP--------DDVQNRPN 248 (370)
Q Consensus 182 S~~f~~m~w~K~~~l~~vL~lGy-~vLfsDvDVVWlRNP~p~f~~---~aDi~is~D~~~g-~~--------~~~~~~~N 248 (370)
.+.+...+..|+.+ -+++. .| .||+.|+|++-++|.-+.+.- +.-+....|++.. .+ .......|
T Consensus 76 ~~~~s~~~y~Rl~l-~~ll~-~~~kvlyLD~D~iv~~di~eL~~~~l~~~~~aav~d~~~~~~~~~~~~~~~~~~~~yfN 153 (311)
T 1g9r_A 76 IRHISITTYARLKL-GEYIA-DCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQEGYKQKIGMADGEYYFN 153 (311)
T ss_dssp CTTCCGGGGGGGGH-HHHCC-SCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEEECHHHHTSTTHHHHTTCCTTSCCEE
T ss_pred cccCCHHHHHHHHH-HHHhh-hcCEEEEEcCCeEeccCHHHHhccCCCCcEEEEEeccchhhhHHHHHhcCCCCCCceEe
Confidence 01111233445433 34443 44 499999999999999887753 2334444454321 00 11235789
Q ss_pred eEEEEEeeCH----HHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCCCCCcEEEEccccc
Q 017526 249 GGFNHVKSNN----RSIEFYRFWYASRETYPGYHDQDVLNIIKFDPSIMDIGLKIKFLDTAY 306 (370)
Q Consensus 249 sGf~yvRst~----rti~f~~~W~~~~~~~p~~~DQ~vfN~ll~~~~~~~~gl~v~~Ld~~~ 306 (370)
+|++.+..+. ...+-+.+|.+.....-...||+++|.+... ++..||..+
T Consensus 154 sGv~linl~~~r~~~~~~~~~~~~~~~~~~~~~~DQd~lN~~f~~--------~~~~Lp~~w 207 (311)
T 1g9r_A 154 AGVLLINLKKWRRHDIFKMSSEWVEQYKDVMQYQDQDILNGLFKG--------GVCYANSRF 207 (311)
T ss_dssp EEEEEECHHHHTTSCHHHHHHHHHHHHTTTCSSHHHHHHHHHHTT--------SEEEECGGG
T ss_pred eeeeeeeHHHHHhcchHHHHHHHHHhccCcCccCCcCHHHHHHcC--------CEEEcChhh
Confidence 9999998763 1222333454433222235799999998832 356676543
No 4
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=96.63 E-value=0.007 Score=57.11 Aligned_cols=202 Identities=17% Similarity=0.148 Sum_probs=94.8
Q ss_pred EEEEcCccccCCChhHHHHHHhhhhccCcccccccEEEEEe--cHHHHHHHHhc----CccEEEeecCCcCCcccccccc
Q 017526 109 ILTTLNEAWAAPDSVIDLFLESFRIGDGTRKLLNHLVIIAL--DQKAFERCLTL----HRHCFALITDGVDFHQEAYFMT 182 (370)
Q Consensus 109 IlT~~N~a~a~pgs~ldlfLeS~r~g~~t~~ll~hllVvAl--D~~a~~~c~~~----~~~c~~~~~~~~d~s~~~~ygS 182 (370)
|+.++|..|..+ +-..+.|+........+ ++.|+.. +++..+.+++. +............+.. .-.+
T Consensus 8 I~~~~d~~Y~~~---~~v~i~Sl~~~~~~~~~--~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~~~~~~--~~~~ 80 (276)
T 3tzt_A 8 LLLTLDENYIPQ---MKVLMTSIYINNPGRIF--DVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRATDDLFSF--AKVT 80 (276)
T ss_dssp EEEECCGGGHHH---HHHHHHHHHHHSTTCCE--EEEEEESCCCHHHHHHHHHHHHTTTCEEEEEECC------------
T ss_pred EEEEeCHhHHHH---HHHHHHHHHHhCCCCce--EEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEEeCHHHHhc--Cccc
Confidence 678889998653 22335566542111121 2334443 34544444432 3222222221111211 0112
Q ss_pred HHHHHHHHHHHHHHHHHHHcCc-eEEEecceEEeccCCccCcCC---CCCeeEeccCCCCCC---------CCCCCCCce
Q 017526 183 PQYLKMMWKRIDFLRTVLEMGY-NFIFTDADIMWFRDPFPRFYP---DADFQVACDHFLGSP---------DDVQNRPNG 249 (370)
Q Consensus 183 ~~f~~m~w~K~~~l~~vL~lGy-~vLfsDvDVVWlRNP~p~f~~---~aDi~is~D~~~g~~---------~~~~~~~Ns 249 (370)
+.|...+..|+.+ -+++...+ .||+.|+|++.++|.-+.+.. +.-+....|+..... .......|+
T Consensus 81 ~~~s~~~~~rl~~-~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl~~~~~aav~d~~~~~~~~~~~~~~l~~~~~yfNs 159 (276)
T 3tzt_A 81 DRYPKEMYYRLLA-GEFLPENLGEILYLDPDMLVINPLDDLLRTDISDYILAAASHTGKTDMANNVNRIRLGTDTDYYNS 159 (276)
T ss_dssp ---CHHHHHHHTH-HHHSCTTCCEEEEECSSEEECSCSHHHHTCCCTTSSEEEEEC--------------------CEEE
T ss_pred cccCHHHHHHHHH-HHHcccccCeEEEEeCCeeecCCHHHHhhcCCCCCeEEEEEecccchHHHHHHHhcCCCCCCeEEe
Confidence 2344555555543 33444445 599999999999999888753 233544455432210 011368899
Q ss_pred EEEEEeeCH-HHHHHHHHHHHHHhcCC---CCCchHHHHHHHcCCCCCCCCcEEEEccc--ccc-CCccc------c-CC
Q 017526 250 GFNHVKSNN-RSIEFYRFWYASRETYP---GYHDQDVLNIIKFDPSIMDIGLKIKFLDT--AYF-GGLCE------P-SE 315 (370)
Q Consensus 250 Gf~yvRst~-rti~f~~~W~~~~~~~p---~~~DQ~vfN~ll~~~~~~~~gl~v~~Ld~--~~F-~Gf~q------~-~~ 315 (370)
|++.+..+. |-..+.+.+.+....++ ...||++||.+... ++..||. ..+ +|+.. . ..
T Consensus 160 GV~linl~~~R~~~~~~~~~~~~~~~~~~~~~~DQd~LN~~f~~--------~~~~Lp~~~wN~~~~~~~~~~~~~~~~~ 231 (276)
T 3tzt_A 160 GLLLINLKRAREEIDPDEIFSFVEDNHMNLLLPDQDILNAMYGD--------RIYPLDDLIYNYDARNYSSYLIRSKKQA 231 (276)
T ss_dssp EEEEEEHHHHHHHCCHHHHHHHHHHC--------CHHHHHHHGG--------GEEEEEHHHHSEETTCHHHHHHHTTTCC
T ss_pred eEEEEEHHHHHhhhHHHHHHHHHHhccccccCCChhHHHHHHhC--------CEEECCchheeeecccchhhhccccchh
Confidence 999998764 11112222222222222 25799999999832 4788885 233 33321 0 11
Q ss_pred C----CcceEEEeec
Q 017526 316 D----FNVVCTMHAN 326 (370)
Q Consensus 316 d----~~~p~~vHaN 326 (370)
+ ...|.++|-+
T Consensus 232 ~~~~~~~~~~iiHy~ 246 (276)
T 3tzt_A 232 DLAWLMDHTVVLHFC 246 (276)
T ss_dssp SHHHHHHHCCEEECC
T ss_pred hhhhhccCCeEEEEC
Confidence 2 2368999976
No 5
>2c0n_A A197; thermophil protein, thermophilic virus, STIV, sulfolobus turreted ICOS virus; 1.86A {Sulfolobus turreted icosahedral virus}
Probab=43.36 E-value=17 Score=32.85 Aligned_cols=67 Identities=18% Similarity=0.201 Sum_probs=45.2
Q ss_pred HHHHHHHhcCccEEEeecCCcCCccccccccHHHHHHHHHHHHHHHHHHH-cCce-EEEecceEEeccCCccC----cCC
Q 017526 152 KAFERCLTLHRHCFALITDGVDFHQEAYFMTPQYLKMMWKRIDFLRTVLE-MGYN-FIFTDADIMWFRDPFPR----FYP 225 (370)
Q Consensus 152 ~a~~~c~~~~~~c~~~~~~~~d~s~~~~ygS~~f~~m~w~K~~~l~~vL~-lGy~-vLfsDvDVVWlRNP~p~----f~~ 225 (370)
.....|.+.|+..+.... .. -+...|..++.++|+ .||+ ++|.|+|||=+.=+-+. +..
T Consensus 16 ~l~~~l~~~gi~~~l~~~--~S-------------lI~raRN~lv~~Fl~~~~~dhllfIDAD~~~I~FdPe~V~rLl~~ 80 (203)
T 2c0n_A 16 PLIDFLVKNDIEYVILSR--RN-------------HVAVQREIALDMFLEMKDYDTLAFLDEDVVPIEIDFQKVEAKFNE 80 (203)
T ss_dssp HHHHHHHHTTCCEEEECC--CS-------------CHHHHHHHHHHHHHHCTTCCEEEEECTTEEEEECCHHHHHHHHHH
T ss_pred HHHHHHHhCCCeEEEEcc--cc-------------chHHHHHHHHHHHHhcCCCCEEEEEeCCCCccccCHHHHHHHHhC
Confidence 445667788887665533 11 245579999999888 6987 88999997755533222 235
Q ss_pred CCCeeEec
Q 017526 226 DADFQVAC 233 (370)
Q Consensus 226 ~aDi~is~ 233 (370)
++|+++.+
T Consensus 81 g~DVV~Gs 88 (203)
T 2c0n_A 81 GYDVVCGY 88 (203)
T ss_dssp TCSEEEEE
T ss_pred CCCEEEEE
Confidence 88998765
No 6
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=28.44 E-value=3.2e+02 Score=26.05 Aligned_cols=110 Identities=10% Similarity=0.026 Sum_probs=67.3
Q ss_pred eEEEEEcCccccCCChhHHHHHHhhhhccCcccccccEEEEEecH---HHHHHHHhcCccEEEeecCCcC--Cccccccc
Q 017526 107 TVILTTLNEAWAAPDSVIDLFLESFRIGDGTRKLLNHLVIIALDQ---KAFERCLTLHRHCFALITDGVD--FHQEAYFM 181 (370)
Q Consensus 107 tVIlT~~N~a~a~pgs~ldlfLeS~r~g~~t~~ll~hllVvAlD~---~a~~~c~~~~~~c~~~~~~~~d--~s~~~~yg 181 (370)
.|||++.|.. . +..-|+|+..... .--...|||+.|. ++.+.+++.+...-........ ...+...|
T Consensus 5 pViI~~yNRp-----~-l~~~L~sL~~~~p--~~~~~~iivsdDgs~~~~~~vi~~~~~~I~~~~~~d~~~~~~~~~N~g 76 (343)
T 1fo8_A 5 PILVIACDRS-----T-VRRCLDKLLHYRP--SAELFPIIVSQDCGHEETAQVIASYGSAVTHIRQPDLSNIAVQPDHRK 76 (343)
T ss_dssp CEEEEESSCT-----T-HHHHHHHHHHHCS--CTTTSCEEEEECTTCHHHHHHHHTTGGGSEEEECSCCCCCCCCTTCGG
T ss_pred cEEEEECCcH-----H-HHHHHHHHHhcCC--CcCCcEEEEEECCCCHHHHHHHHHcCCceEEEEcCCccccccchhhcC
Confidence 5788888866 2 7778888875321 1123468888776 4555666543221111111111 11223345
Q ss_pred cHHHHHHHHHHHHHHHHHHH--cCceEEEecceEEeccCCccCcC
Q 017526 182 TPQYLKMMWKRIDFLRTVLE--MGYNFIFTDADIMWFRDPFPRFY 224 (370)
Q Consensus 182 S~~f~~m~w~K~~~l~~vL~--lGy~vLfsDvDVVWlRNP~p~f~ 224 (370)
-++|.++...-...+..+.+ .+=.+|+.|-|++.=.|=|+||.
T Consensus 77 ~~~y~~ia~h~~~al~~vf~~~~~~~vIiLEDDl~~spdF~~y~~ 121 (343)
T 1fo8_A 77 FQGYYKIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQ 121 (343)
T ss_dssp GHHHHHHHHHHHHHHHHHHTTSCCSEEEEEETTEEECTTHHHHHH
T ss_pred cccchhHhHHHHHHHHHHHHhccCCEEEEEcCCCeECHHHHHHHH
Confidence 56677777666667777766 55569999999999888888874
No 7
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=19.20 E-value=3.3e+02 Score=23.45 Aligned_cols=58 Identities=9% Similarity=-0.074 Sum_probs=35.1
Q ss_pred cccEEEEEecHHHHH-HHHhcCccEEEeecCCcCCccccccccHHHHHHHHHHHHHHHHHHHcCce
Q 017526 141 LNHLVIIALDQKAFE-RCLTLHRHCFALITDGVDFHQEAYFMTPQYLKMMWKRIDFLRTVLEMGYN 205 (370)
Q Consensus 141 l~hllVvAlD~~a~~-~c~~~~~~c~~~~~~~~d~s~~~~ygS~~f~~m~w~K~~~l~~vL~lGy~ 205 (370)
++-+|+...+++..+ .+.+.++|+..+.....+ .. +-..++.+.+.. ....++++|+.
T Consensus 65 ~dgiIi~~~~~~~~~~~l~~~~iPvV~~~~~~~~---~~-~V~~D~~~~g~~---a~~~L~~~G~~ 123 (277)
T 3e61_A 65 CTGMISTAFNENIIENTLTDHHIPFVFIDRINNE---HN-GISTNHFKGGQL---QAEVVRKGKGK 123 (277)
T ss_dssp CSEEEECGGGHHHHHHHHHHC-CCEEEGGGCC-------------HHHHHHH---HHHHHHHTTCC
T ss_pred CCEEEEecCChHHHHHHHHcCCCCEEEEeccCCC---CC-eEEechHHHHHH---HHHHHHHCCCC
Confidence 455778788889899 999999999887643211 11 444555555544 55667778985
No 8
>3l9k_W Dynein intermediate chain, cytosolic; LC7, light chain 7, KM23, RO hydrolase, alternative splicing, lysosome, membrane; 3.00A {Drosophila melanogaster}
Probab=17.18 E-value=57 Score=21.61 Aligned_cols=30 Identities=3% Similarity=0.173 Sum_probs=26.4
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHcCceEE
Q 017526 178 AYFMTPQYLKMMWKRIDFLRTVLEMGYNFI 207 (370)
Q Consensus 178 ~~ygS~~f~~m~w~K~~~l~~vL~lGy~vL 207 (370)
....|.+|....-+..+++.+.|.-.||++
T Consensus 8 ~I~~S~~F~~F~~rsskviERAL~e~yDi~ 37 (38)
T 3l9k_W 8 MIILSENFQRFVVRAGRVIERALSENVDIY 37 (38)
T ss_dssp HHHTSHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHccccccc
Confidence 456789999999999999999999888864
No 9
>3p0b_A TT1467 protein; glycoside hydrolase GH57, glycogen branching, transferase; 1.35A {Thermus thermophilus} PDB: 1ufa_A
Probab=15.18 E-value=58 Score=33.54 Aligned_cols=30 Identities=17% Similarity=0.329 Sum_probs=25.0
Q ss_pred HHHHHHHHHcCceEEEecceEEeccCCccC
Q 017526 193 IDFLRTVLEMGYNFIFTDADIMWFRDPFPR 222 (370)
Q Consensus 193 ~~~l~~vL~lGy~vLfsDvDVVWlRNP~p~ 222 (370)
..+...+-+.|+..+|+|...+-...|.|.
T Consensus 226 ~~l~~~L~~~Gi~y~~vd~~~~~~~~~~p~ 255 (540)
T 3p0b_A 226 PGVDELLMRAGIRYTFVDAHLVQGGEPLSP 255 (540)
T ss_dssp CCHHHHHHHTTCCEEEECTHHHHCSSCCCC
T ss_pred hhHHHHHHHcCCeEEEECchhhccCCCCCC
Confidence 357888889999999999998888777663
No 10
>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1
Probab=13.45 E-value=3e+02 Score=25.41 Aligned_cols=45 Identities=13% Similarity=0.278 Sum_probs=35.7
Q ss_pred HHHHHHHHhcCccEEEeecCCcCCccccccccHHHHHHHHHHHHHHHHHHHcCceEEE
Q 017526 151 QKAFERCLTLHRHCFALITDGVDFHQEAYFMTPQYLKMMWKRIDFLRTVLEMGYNFIF 208 (370)
Q Consensus 151 ~~a~~~c~~~~~~c~~~~~~~~d~s~~~~ygS~~f~~m~w~K~~~l~~vL~lGy~vLf 208 (370)
++-++.|+++|..+..++....+++.+ .|.++|..+.+.|+.|+.
T Consensus 88 ~~yl~~~k~lGf~~iEiS~G~i~l~~~-------------~~~~~I~~~~~~G~~v~~ 132 (251)
T 1qwg_A 88 DEFLNECEKLGFEAVEISDGSSDISLE-------------ERNNAIKRAKDNGFMVLT 132 (251)
T ss_dssp HHHHHHHHHHTCCEEEECCSSSCCCHH-------------HHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHcCCCEEEECCCcccCCHH-------------HHHHHHHHHHHCCCEEee
Confidence 455789999999999887665666532 588899999999999964
Done!