BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017527
(370 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E2N|A Chain A, Crystal Structure Of Sulfolobus Tokodaii Hexokinase In The
Apo Form
pdb|2E2N|B Chain B, Crystal Structure Of Sulfolobus Tokodaii Hexokinase In The
Apo Form
pdb|2E2O|A Chain A, Crystal Structure Of Sulfolobus Tokodaii Hexokinase In
Complex With Glucose
pdb|2E2P|A Chain A, Crystal Structure Of Sulfolobus Tokodaii Hexokinase In
Complex With Adp
pdb|2E2P|B Chain B, Crystal Structure Of Sulfolobus Tokodaii Hexokinase In
Complex With Adp
pdb|2E2Q|A Chain A, Crystal Structure Of Sulfolobus Tokodaii Hexokinase In
Complex With Xylose, Mg2+, And Adp
pdb|2E2Q|B Chain B, Crystal Structure Of Sulfolobus Tokodaii Hexokinase In
Complex With Xylose, Mg2+, And Adp
Length = 299
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 111/246 (45%), Gaps = 21/246 (8%)
Query: 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMA 82
+I+G+D G T T + + ++G N+++VG A E I++ +
Sbjct: 3 IIVGVDAGGTKTKAVAYDCEG---------NFIGEGSSGPGNYHNVGLTRAIENIKEAVK 53
Query: 83 DALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGT 142
A + V + V+G++ D + I P ++ + +D + AL + T
Sbjct: 54 IAA------KGEADVVGMGVAGLDSKFDWENFTPLASLIAP---KVIIQHDGVIALFAET 104
Query: 143 MGKLHGCVLIAGTGTIAYGFTEXXXXXXXXXXXPILGDWGSGYGIAAQALTAVIRAYDGR 202
+G+ G V+IAGTG++ G+ +L D GS Y + +AL V++ DG
Sbjct: 105 LGE-PGVVVIAGTGSVVEGYN-GKEFLRVGGRGWLLSDDGSAYWVGRKALRKVLKMMDGL 162
Query: 203 GPDTMLTSNILSTLELSSPDELIGWTYVDP-SWARIAALVPVVVSCAEAGDEVANKILQD 261
T+L + +L T+ + DEL+ W+Y +A++ V A GD VA IL+
Sbjct: 163 ENKTILYNKVLKTINVKDLDELVMWSYTSSCQIDLVASIAKAVDEAANEGDTVAMDILKQ 222
Query: 262 SVEELA 267
E LA
Sbjct: 223 GAELLA 228
>pdb|2CH5|A Chain A, Crystal Structure Of Human N-Acetylglucosamine Kinase In
Complex With N-Acetylglucosamine
pdb|2CH5|B Chain B, Crystal Structure Of Human N-Acetylglucosamine Kinase In
Complex With N-Acetylglucosamine
pdb|2CH5|C Chain C, Crystal Structure Of Human N-Acetylglucosamine Kinase In
Complex With N-Acetylglucosamine
pdb|2CH5|D Chain D, Crystal Structure Of Human N-Acetylglucosamine Kinase In
Complex With N-Acetylglucosamine
Length = 347
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 113/261 (43%), Gaps = 11/261 (4%)
Query: 54 VLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSN-RSAVRAVCLAVSGVNHPTDQQ 112
+LA A +NH +G D E I +++ A K+G + +R++ L++SG + +
Sbjct: 29 ILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLSGGDQEDAGR 88
Query: 113 RILNWLRDIFPGNVRLY-VHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEXXXXXXX 171
++ LRD FP Y + DA ++A+ T G VLI+GTG+
Sbjct: 89 ILIEELRDRFPYLSESYLITTDAAGSIATATPDG--GVVLISGTGSNCRLINPDGSESGC 146
Query: 172 XXXXPILGDWGSGYGIAAQALTAVIRAYDG--RGPDTMLTSNILSTLELSSPDEL--IGW 227
++GD GS Y IA QA+ V + D P + PD L +
Sbjct: 147 GGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGILTH 206
Query: 228 TYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHS 287
Y D R A + A+ GD ++ I + + E L + AV+ + GK
Sbjct: 207 LYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHIVAVLPEIDPVLFQGKIG 266
Query: 288 FPLVMVGGVLEANRRWDIGRE 308
P++ VG V ++ W++ +E
Sbjct: 267 LPILCVGSVWKS---WELLKE 284
>pdb|2CH6|A Chain A, Crystal Structure Of Human N-Acetylglucosamine Kinase In
Complex With Adp And Glucose
pdb|2CH6|B Chain B, Crystal Structure Of Human N-Acetylglucosamine Kinase In
Complex With Adp And Glucose
pdb|2CH6|C Chain C, Crystal Structure Of Human N-Acetylglucosamine Kinase In
Complex With Adp And Glucose
pdb|2CH6|D Chain D, Crystal Structure Of Human N-Acetylglucosamine Kinase In
Complex With Adp And Glucose
Length = 344
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 113/261 (43%), Gaps = 11/261 (4%)
Query: 54 VLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSN-RSAVRAVCLAVSGVNHPTDQQ 112
+LA A +NH +G D E I +++ A K+G + +R++ L++SG + +
Sbjct: 26 ILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLSGGDQEDAGR 85
Query: 113 RILNWLRDIFPGNVRLY-VHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEXXXXXXX 171
++ LRD FP Y + DA ++A+ T G VLI+GTG+
Sbjct: 86 ILIEELRDRFPYLSESYLITTDAAGSIATATPDG--GVVLISGTGSNCRLINPDGSESGC 143
Query: 172 XXXXPILGDWGSGYGIAAQALTAVIRAYDG--RGPDTMLTSNILSTLELSSPDEL--IGW 227
++GD GS Y IA QA+ V + D P + PD L +
Sbjct: 144 GGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGILTH 203
Query: 228 TYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHS 287
Y D R A + A+ GD ++ I + + E L + AV+ + GK
Sbjct: 204 LYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHIVAVLPEIDPVLFQGKIG 263
Query: 288 FPLVMVGGVLEANRRWDIGRE 308
P++ VG V ++ W++ +E
Sbjct: 264 LPILCVGSVWKS---WELLKE 281
>pdb|1DIK|A Chain A, Pyruvate Phosphate Dikinase
Length = 874
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 249 EAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGRE 308
E G + D ++ELA KAV + +++GE+ ++G V R WD R
Sbjct: 162 EKGVHFDTDLTADDLKELAEKFKAVYKE-AMNGEEFPQEPKDQLMGAVKAVFRSWDNPRA 220
Query: 309 VVKCILRDYPG 319
+V + D PG
Sbjct: 221 IVYRRMNDIPG 231
>pdb|1KBL|A Chain A, Pyruvate Phosphate Dikinase
pdb|1KC7|A Chain A, Pyruvate Phosphate Dikinase With Bound
Mg-Phosphonopyruvate
Length = 873
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 249 EAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGRE 308
E G + D ++ELA KAV + +++GE+ ++G V R WD R
Sbjct: 161 EKGVHFDTDLTADDLKELAEKFKAVYKE-AMNGEEFPQEPKDQLMGAVKAVFRSWDNPRA 219
Query: 309 VVKCILRDYPG 319
+V + D PG
Sbjct: 220 IVYRRMNDIPG 230
>pdb|2DIK|A Chain A, R337a Mutant Of Pyruvate Phosphate Dikinase
Length = 873
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 249 EAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGRE 308
E G + D ++ELA KAV + +++GE+ ++G V R WD R
Sbjct: 161 EKGVHFDTDLTADDLKELAEKFKAVYKE-AMNGEEFPQEPKDQLMGAVKAVFRSWDNPRA 219
Query: 309 VVKCILRDYPG 319
+V + D PG
Sbjct: 220 IVYRRMNDIPG 230
>pdb|1JDE|A Chain A, K22a Mutant Of Pyruvate, Phosphate Dikinase
Length = 873
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 249 EAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGRE 308
E G + D ++ELA KAV + +++GE+ ++G V R WD R
Sbjct: 161 EKGVHFDTDLTADDLKELAEKFKAVYKE-AMNGEEFPQEPKDQLMGAVKAVFRSWDNPRA 219
Query: 309 VVKCILRDYPG 319
+V + D PG
Sbjct: 220 IVYRRMNDIPG 230
>pdb|1GGO|A Chain A, T453a Mutant Of Pyruvate, Phosphate Dikinase
Length = 873
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 249 EAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGRE 308
E G + D ++ELA KAV + +++GE+ ++G V R WD R
Sbjct: 161 EKGVHFDTDLTADDLKELAEKFKAVYKE-AMNGEEFPQEPKDQLMGAVKAVFRSWDNPRA 219
Query: 309 VVKCILRDYPG 319
+V + D PG
Sbjct: 220 IVYRRMNDIPG 230
>pdb|2G0F|A Chain A, Crystal Structure Of P144a Mutant Of E.Coli Ccmg Protein
Length = 168
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 93 SAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLI 152
+ + A + V G+N+ D+Q+ ++WL+++ D + L G G LI
Sbjct: 74 NQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAAE-TFLI 132
Query: 153 AGTGTIAY 160
G G I Y
Sbjct: 133 DGNGIIRY 140
>pdb|2B1K|A Chain A, Crystal Structure Of E. Coli Ccmg Protein
Length = 168
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 93 SAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLI 152
+ + A + V G+N+ D+Q+ ++WL+++ D + L G G LI
Sbjct: 74 NQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPE-TFLI 132
Query: 153 AGTGTIAY 160
G G I Y
Sbjct: 133 DGNGIIRY 140
>pdb|1Z5Y|E Chain E, Crystal Structure Of The Disulfide-linked Complex Between
The N-terminal Domain Of The Electron Transfer Catalyst
Dsbd And The Cytochrome C Biogenesis Protein Ccmg
Length = 149
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 93 SAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLI 152
+ + A + V G+N+ D+Q+ ++WL+++ D + L G G LI
Sbjct: 49 NQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPE-TFLI 107
Query: 153 AGTGTIAY 160
G G I Y
Sbjct: 108 DGNGIIRY 115
>pdb|2B1L|A Chain A, Crystal Structure Of N-Terminal 57 Residue Deletion Mutant
Of E. Coli Ccmg Protein(Residues 58-185)
pdb|2B1L|B Chain B, Crystal Structure Of N-Terminal 57 Residue Deletion Mutant
Of E. Coli Ccmg Protein(Residues 58-185)
Length = 129
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 93 SAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLI 152
+ + A + V G+N+ D+Q+ ++WL+++ D + L G G LI
Sbjct: 35 NQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPE-TFLI 93
Query: 153 AGTGTIAY 160
G G I Y
Sbjct: 94 DGNGIIRY 101
>pdb|3K8N|A Chain A, Crystal Structure Of E. Coli Ccmg
Length = 185
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 93 SAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLI 152
+ + A + V G+N+ D+Q+ ++WL+++ D + L G G LI
Sbjct: 91 NQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPE-TFLI 149
Query: 153 AGTGTIAY 160
G G I Y
Sbjct: 150 DGNGIIRY 157
>pdb|2R82|A Chain A, Pyruvate Phosphate Dikinase (Ppdk) Triple Mutant
R219eE271RS262D Adapts A Second Conformational State
Length = 874
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 249 EAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGRE 308
E G + D ++ELA KAV + +++GE+ ++G V R WD
Sbjct: 162 EKGVHFDTDLTADDLKELAEKFKAVYKE-AMNGEEFPQEPKDQLMGAVKAVFRSWDNPEA 220
Query: 309 VVKCILRDYPG 319
+V + D PG
Sbjct: 221 IVYRRMNDIPG 231
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,884,281
Number of Sequences: 62578
Number of extensions: 425062
Number of successful extensions: 982
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 973
Number of HSP's gapped (non-prelim): 18
length of query: 370
length of database: 14,973,337
effective HSP length: 100
effective length of query: 270
effective length of database: 8,715,537
effective search space: 2353194990
effective search space used: 2353194990
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)