Query 017527
Match_columns 370
No_of_seqs 173 out of 1242
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 09:22:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017527.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017527hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1794 N-Acetylglucosamine ki 100.0 2.3E-43 4.9E-48 325.5 27.9 296 21-328 2-305 (336)
2 COG2971 Predicted N-acetylgluc 100.0 6.6E-38 1.4E-42 294.2 30.7 272 20-315 3-275 (301)
3 TIGR00744 ROK_glcA_fam ROK fam 100.0 2.1E-34 4.4E-39 279.4 21.3 287 25-353 1-312 (318)
4 PRK13310 N-acetyl-D-glucosamin 100.0 1E-33 2.2E-38 273.1 21.1 266 23-349 1-300 (303)
5 COG1940 NagC Transcriptional r 100.0 2.6E-33 5.7E-38 271.4 22.3 279 20-349 4-305 (314)
6 PF01869 BcrAD_BadFG: BadF/Bad 100.0 6.6E-33 1.4E-37 263.4 23.7 251 25-320 1-251 (271)
7 PRK09557 fructokinase; Reviewe 100.0 8.9E-33 1.9E-37 266.3 20.5 266 23-349 1-299 (301)
8 PRK05082 N-acetylmannosamine k 100.0 1.3E-31 2.9E-36 256.9 20.4 260 24-349 3-286 (291)
9 PRK09698 D-allose kinase; Prov 100.0 1.5E-31 3.2E-36 257.8 20.4 272 20-354 2-299 (302)
10 PRK12408 glucokinase; Provisio 100.0 2E-29 4.2E-34 246.9 18.2 274 21-349 15-331 (336)
11 PRK00292 glk glucokinase; Prov 100.0 2.1E-29 4.6E-34 244.5 17.8 277 22-349 2-313 (316)
12 PRK13311 N-acetyl-D-glucosamin 100.0 4.8E-28 1E-32 228.4 18.2 212 23-278 1-245 (256)
13 PRK14101 bifunctional glucokin 99.9 2.7E-27 5.8E-32 249.9 17.7 287 20-353 16-332 (638)
14 TIGR00749 glk glucokinase, pro 99.9 1.1E-25 2.5E-30 218.6 17.9 282 25-346 1-316 (316)
15 PF00480 ROK: ROK family; Int 99.8 1.4E-20 3.1E-25 167.4 8.2 146 26-192 1-169 (179)
16 TIGR02707 butyr_kinase butyrat 99.8 5E-17 1.1E-21 159.7 24.8 251 24-318 2-322 (351)
17 PTZ00288 glucokinase 1; Provis 99.8 3E-18 6.5E-23 170.6 14.8 307 21-349 25-388 (405)
18 PRK03011 butyrate kinase; Prov 99.7 1.6E-15 3.6E-20 149.3 21.1 265 23-349 3-345 (358)
19 PF02685 Glucokinase: Glucokin 99.6 6.5E-14 1.4E-18 135.9 14.8 281 25-349 1-313 (316)
20 COG0837 Glk Glucokinase [Carbo 99.3 3.2E-10 6.9E-15 106.9 22.4 288 20-348 4-316 (320)
21 smart00732 YqgFc Likely ribonu 99.2 6.8E-11 1.5E-15 95.0 8.8 92 23-138 2-97 (99)
22 PLN02914 hexokinase 99.2 2.1E-08 4.5E-13 102.3 26.6 297 21-349 94-484 (490)
23 PTZ00107 hexokinase; Provision 99.1 4.9E-08 1.1E-12 99.3 26.1 294 21-349 73-457 (464)
24 PRK00976 hypothetical protein; 99.1 1.3E-08 2.9E-13 98.2 20.7 84 240-349 225-309 (326)
25 PLN02405 hexokinase 99.1 7.9E-08 1.7E-12 98.4 26.2 301 21-349 94-486 (497)
26 PLN02596 hexokinase-like 99.0 2.1E-07 4.6E-12 95.0 25.9 302 21-349 95-481 (490)
27 PLN02362 hexokinase 99.0 3E-07 6.4E-12 94.4 25.6 297 21-349 94-495 (509)
28 PRK13318 pantothenate kinase; 98.8 4.9E-08 1.1E-12 92.4 12.3 126 24-170 2-148 (258)
29 TIGR00241 CoA_E_activ CoA-subs 98.7 1.6E-06 3.5E-11 81.5 20.4 219 23-313 1-227 (248)
30 KOG1369 Hexokinase [Carbohydra 98.7 3.9E-06 8.4E-11 84.8 21.2 301 21-348 85-463 (474)
31 PRK13321 pantothenate kinase; 98.5 3.3E-06 7.1E-11 79.9 15.6 126 23-169 1-147 (256)
32 PRK15080 ethanolamine utilizat 98.3 0.00024 5.1E-09 67.7 23.2 135 21-171 23-160 (267)
33 COG5026 Hexokinase [Carbohydra 98.3 0.00017 3.6E-09 71.7 22.4 138 21-167 74-241 (466)
34 TIGR01312 XylB D-xylulose kina 98.3 6.9E-07 1.5E-11 91.6 4.6 101 25-136 1-124 (481)
35 TIGR02529 EutJ ethanolamine ut 98.1 0.0013 2.9E-08 61.5 23.5 129 26-170 1-132 (239)
36 PRK00047 glpK glycerol kinase; 98.1 1.4E-05 3.1E-10 82.5 9.7 79 18-105 1-85 (498)
37 PF00370 FGGY_N: FGGY family o 98.1 2.3E-05 4.9E-10 73.2 9.8 74 23-105 1-80 (245)
38 TIGR03192 benz_CoA_bzdQ benzoy 98.0 0.0032 7E-08 60.5 24.1 65 23-106 33-97 (293)
39 TIGR01311 glycerol_kin glycero 97.9 5.7E-05 1.2E-09 78.0 9.6 75 22-105 1-81 (493)
40 COG3426 Butyrate kinase [Energ 97.9 0.0013 2.8E-08 62.1 17.4 255 21-318 2-325 (358)
41 TIGR03286 methan_mark_15 putat 97.9 0.012 2.6E-07 58.8 25.0 65 22-106 144-208 (404)
42 PRK04123 ribulokinase; Provisi 97.8 8.5E-05 1.8E-09 77.7 9.8 75 20-103 1-88 (548)
43 PRK10939 autoinducer-2 (AI-2) 97.8 0.00013 2.7E-09 76.0 10.3 75 21-104 2-84 (520)
44 TIGR01315 5C_CHO_kinase FGGY-f 97.7 0.00012 2.6E-09 76.5 9.3 72 23-103 1-78 (541)
45 PF00349 Hexokinase_1: Hexokin 97.7 0.00046 1E-08 63.2 11.6 114 21-143 62-204 (206)
46 COG1070 XylB Sugar (pentulose 97.6 0.00022 4.8E-09 73.9 9.6 77 20-105 2-85 (502)
47 TIGR01234 L-ribulokinase L-rib 97.6 0.0002 4.4E-09 74.7 9.3 72 23-103 2-91 (536)
48 TIGR01314 gntK_FGGY gluconate 97.6 0.00026 5.7E-09 73.3 9.7 72 23-104 1-78 (505)
49 TIGR02261 benz_CoA_red_D benzo 97.6 0.048 1E-06 51.7 23.6 63 242-314 174-236 (262)
50 PLN02295 glycerol kinase 97.6 0.00028 6.1E-09 73.2 9.4 72 23-103 1-82 (512)
51 PRK13317 pantothenate kinase; 97.6 0.013 2.8E-07 56.1 20.0 115 22-174 2-123 (277)
52 PTZ00294 glycerol kinase-like 97.6 0.00038 8.3E-09 72.1 10.1 73 23-104 3-83 (504)
53 COG1924 Activator of 2-hydroxy 97.5 0.058 1.3E-06 53.2 24.1 65 22-106 135-199 (396)
54 PRK10331 L-fuculokinase; Provi 97.4 0.00068 1.5E-08 69.6 9.9 72 22-104 2-81 (470)
55 COG1069 AraB Ribulose kinase [ 97.4 0.00043 9.3E-09 70.7 7.5 76 20-103 1-82 (544)
56 PRK15027 xylulokinase; Provisi 97.4 0.0007 1.5E-08 69.8 9.0 69 23-102 1-75 (484)
57 PF00871 Acetate_kinase: Aceto 97.4 0.031 6.6E-07 56.1 20.3 55 240-300 280-334 (388)
58 TIGR02628 fuculo_kin_coli L-fu 97.3 0.001 2.2E-08 68.2 9.6 72 22-104 1-80 (465)
59 TIGR00555 panK_eukar pantothen 97.2 0.083 1.8E-06 50.6 19.9 118 24-174 2-128 (279)
60 COG0554 GlpK Glycerol kinase [ 97.1 0.0015 3.2E-08 66.0 7.8 73 21-102 4-82 (499)
61 PRK09605 bifunctional UGMP fam 97.0 0.42 9.1E-06 49.9 25.5 103 23-136 2-111 (535)
62 PF05378 Hydant_A_N: Hydantoin 97.0 0.002 4.4E-08 57.5 6.8 63 25-102 2-64 (176)
63 TIGR00329 gcp_kae1 metallohydr 96.9 0.44 9.5E-06 46.2 24.9 122 25-157 1-136 (305)
64 PRK13324 pantothenate kinase; 96.9 0.063 1.4E-06 50.9 16.1 127 24-169 2-147 (258)
65 PRK14878 UGMP family protein; 96.9 0.46 1E-05 46.5 22.7 99 25-135 1-106 (323)
66 PLN02669 xylulokinase 96.8 0.0046 9.9E-08 65.0 9.1 73 19-101 5-96 (556)
67 PRK13326 pantothenate kinase; 96.7 0.085 1.8E-06 50.2 15.9 122 22-169 6-149 (262)
68 PRK12440 acetate kinase; Revie 96.6 0.039 8.4E-07 55.2 13.2 138 147-315 202-347 (397)
69 PRK13320 pantothenate kinase; 96.6 0.1 2.2E-06 49.1 15.3 118 23-169 3-137 (244)
70 TIGR03722 arch_KAE1 universal 96.6 0.86 1.9E-05 44.5 25.6 101 25-136 1-108 (322)
71 PRK09604 UGMP family protein; 96.5 1 2.2E-05 44.2 23.3 100 23-133 2-111 (332)
72 TIGR00016 ackA acetate kinase. 96.3 0.064 1.4E-06 53.8 12.8 67 240-314 287-353 (404)
73 TIGR00671 baf pantothenate kin 96.3 0.17 3.8E-06 47.5 15.1 118 25-169 2-139 (243)
74 PRK00180 acetate kinase A/prop 96.0 0.1 2.3E-06 52.4 12.7 139 147-314 203-349 (402)
75 KOG2517 Ribulose kinase and re 95.9 0.029 6.3E-07 57.7 8.5 77 21-105 5-88 (516)
76 PRK07157 acetate kinase; Provi 95.9 0.13 2.7E-06 51.7 12.5 66 240-313 280-345 (400)
77 PRK12379 propionate/acetate ki 95.8 0.13 2.7E-06 51.6 12.3 66 240-314 278-343 (396)
78 TIGR02259 benz_CoA_red_A benzo 95.6 0.023 5E-07 56.7 6.1 73 242-325 344-417 (432)
79 PRK12397 propionate kinase; Re 95.5 0.18 4E-06 50.6 12.1 66 240-314 282-347 (404)
80 PF07318 DUF1464: Protein of u 95.4 1.4 2.9E-05 43.4 17.4 63 243-318 227-289 (343)
81 PTZ00340 O-sialoglycoprotein e 95.2 3.7 8E-05 40.6 25.8 103 23-136 2-112 (345)
82 COG4020 Uncharacterized protei 94.7 3.9 8.5E-05 38.5 18.0 67 241-315 231-297 (332)
83 smart00842 FtsA Cell division 94.7 0.2 4.2E-06 44.9 8.8 75 24-106 1-78 (187)
84 PRK13322 pantothenate kinase; 94.4 1.1 2.4E-05 42.1 13.6 117 24-169 2-139 (246)
85 TIGR03123 one_C_unchar_1 proba 94.4 0.21 4.5E-06 48.8 8.8 125 25-170 1-152 (318)
86 TIGR00904 mreB cell shape dete 94.3 5.7 0.00012 38.7 25.0 68 97-166 100-170 (333)
87 PF03652 UPF0081: Uncharacteri 94.2 0.18 4E-06 43.0 7.1 90 23-135 2-97 (135)
88 PRK07058 acetate kinase; Provi 94.1 0.12 2.6E-06 51.7 6.5 62 241-314 283-344 (396)
89 COG1521 Pantothenate kinase ty 93.8 2.3 5E-05 40.1 14.1 122 24-168 2-144 (251)
90 PRK13929 rod-share determining 93.7 7.5 0.00016 38.0 24.0 71 97-169 100-173 (335)
91 PF03309 Pan_kinase: Type III 93.7 2.7 5.9E-05 38.2 14.3 120 24-170 1-144 (206)
92 COG0282 ackA Acetate kinase [E 93.6 0.31 6.7E-06 48.4 8.3 138 147-314 201-345 (396)
93 PF14574 DUF4445: Domain of un 93.6 0.24 5.3E-06 50.0 7.7 71 23-101 2-90 (412)
94 TIGR03723 bact_gcp putative gl 93.4 8.2 0.00018 37.6 24.4 101 24-136 1-112 (314)
95 PRK09472 ftsA cell division pr 93.3 0.6 1.3E-05 47.4 10.1 76 22-105 8-86 (420)
96 smart00268 ACTIN Actin. ACTIN 93.3 1.6 3.4E-05 43.2 13.0 93 74-170 74-167 (373)
97 COG0533 QRI7 Metal-dependent p 93.2 9.3 0.0002 37.6 24.8 122 23-156 2-136 (342)
98 PF03630 Fumble: Fumble ; Int 93.0 3 6.5E-05 41.2 14.3 53 253-315 262-314 (341)
99 TIGR01174 ftsA cell division p 93.0 0.56 1.2E-05 46.6 9.2 72 24-105 2-78 (371)
100 PRK13331 pantothenate kinase; 92.9 4.8 0.0001 38.0 14.9 115 23-169 8-136 (251)
101 PLN02666 5-oxoprolinase 92.8 0.46 1E-05 54.5 9.3 55 21-85 8-62 (1275)
102 PRK13928 rod shape-determining 92.7 11 0.00023 36.9 24.8 72 97-170 97-171 (336)
103 PLN02902 pantothenate kinase 92.6 19 0.00042 39.7 21.9 53 252-314 320-372 (876)
104 COG1548 Predicted transcriptio 92.4 0.62 1.3E-05 43.9 7.9 87 22-132 3-95 (330)
105 PRK00109 Holliday junction res 92.3 1.1 2.3E-05 38.4 8.9 90 23-137 5-101 (138)
106 PF14639 YqgF: Holliday-juncti 92.3 1.2 2.6E-05 38.7 9.2 99 22-140 5-113 (150)
107 PLN02920 pantothenate kinase 1 92.2 14 0.0003 37.2 19.4 74 253-336 272-350 (398)
108 TIGR03725 bact_YeaZ universal 91.9 3.1 6.7E-05 37.7 12.0 96 24-139 1-99 (202)
109 TIGR02627 rhamnulo_kin rhamnul 91.6 0.16 3.5E-06 51.9 3.6 70 25-104 1-77 (454)
110 PTZ00186 heat shock 70 kDa pre 91.5 23 0.0005 38.2 25.7 73 94-168 159-236 (657)
111 cd00012 ACTIN Actin; An ubiqui 90.9 3.7 8E-05 40.6 12.4 93 74-170 74-167 (371)
112 COG0849 ftsA Cell division ATP 90.7 1.5 3.3E-05 44.4 9.4 73 23-105 7-84 (418)
113 PF06723 MreB_Mbl: MreB/Mbl pr 90.6 6.2 0.00014 38.7 13.3 95 70-169 71-168 (326)
114 COG0145 HyuA N-methylhydantoin 90.5 0.91 2E-05 48.8 8.0 50 22-83 2-51 (674)
115 PRK13930 rod shape-determining 90.4 18 0.00039 35.0 27.0 75 94-170 99-176 (335)
116 KOG2707 Predicted metalloprote 90.3 20 0.00044 35.5 20.0 101 24-136 34-145 (405)
117 PF03727 Hexokinase_2: Hexokin 89.9 0.39 8.4E-06 45.0 4.1 86 253-348 152-237 (243)
118 TIGR03706 exo_poly_only exopol 89.4 9.4 0.0002 36.8 13.5 136 24-169 2-148 (300)
119 PF14450 FtsA: Cell division p 89.4 0.48 1E-05 39.3 3.9 93 24-132 1-98 (120)
120 PRK13328 pantothenate kinase; 88.9 17 0.00036 34.4 14.5 119 23-169 2-141 (255)
121 COG0816 Predicted endonuclease 88.9 4.1 8.9E-05 35.0 9.3 90 22-135 2-98 (141)
122 TIGR00250 RNAse_H_YqgF RNAse H 88.2 2.9 6.2E-05 35.4 7.9 89 25-137 1-95 (130)
123 PF00022 Actin: Actin; InterP 87.5 18 0.00038 35.9 14.4 92 75-170 74-166 (393)
124 COG5146 PanK Pantothenate kina 87.2 27 0.00058 32.9 16.1 131 22-175 18-174 (342)
125 COG0443 DnaK Molecular chapero 86.8 19 0.00041 38.2 14.8 87 68-158 95-184 (579)
126 PRK10854 exopolyphosphatase; P 86.6 18 0.0004 37.7 14.4 137 22-168 11-159 (513)
127 PRK11031 guanosine pentaphosph 86.2 18 0.0004 37.5 14.1 137 21-168 5-154 (496)
128 PF00814 Peptidase_M22: Glycop 86.0 32 0.00069 32.7 19.0 212 72-315 28-247 (268)
129 PF11104 PilM_2: Type IV pilus 85.9 36 0.00079 33.2 18.7 51 255-313 248-298 (340)
130 PRK10719 eutA reactivating fac 85.6 8.8 0.00019 39.5 11.0 141 23-170 7-170 (475)
131 PF06277 EutA: Ethanolamine ut 85.6 6.5 0.00014 40.4 10.0 141 23-169 4-166 (473)
132 TIGR01175 pilM type IV pilus a 84.8 40 0.00087 32.8 24.4 74 23-105 4-78 (348)
133 COG1214 Inactive homolog of me 83.3 22 0.00049 32.7 11.9 100 23-140 2-104 (220)
134 PTZ00452 actin; Provisional 82.7 32 0.00069 34.3 13.6 90 75-169 80-171 (375)
135 COG0248 GppA Exopolyphosphatas 82.6 13 0.00028 38.6 11.0 130 22-162 3-145 (492)
136 PTZ00466 actin-like protein; P 82.3 27 0.00059 34.9 13.0 91 75-170 87-178 (380)
137 PRK13410 molecular chaperone D 81.5 46 0.001 36.0 15.1 87 69-159 111-200 (668)
138 PF13941 MutL: MutL protein 81.4 5.8 0.00013 40.7 7.8 57 24-90 2-58 (457)
139 COG4820 EutJ Ethanolamine util 81.3 8.5 0.00018 35.3 7.9 131 21-170 28-164 (277)
140 PRK13927 rod shape-determining 80.1 60 0.0013 31.4 27.5 65 97-163 98-165 (334)
141 PRK13411 molecular chaperone D 79.5 56 0.0012 35.2 15.0 85 69-158 109-198 (653)
142 PRK01433 hscA chaperone protei 78.8 96 0.0021 33.1 24.7 90 69-162 117-209 (595)
143 CHL00094 dnaK heat shock prote 78.5 56 0.0012 34.9 14.6 68 94-163 134-204 (621)
144 PTZ00297 pantothenate kinase; 75.9 1.8E+02 0.0038 34.6 20.2 52 254-315 1367-1418(1452)
145 COG4972 PilM Tfp pilus assembl 74.8 6 0.00013 38.7 5.4 71 23-105 11-85 (354)
146 COG1077 MreB Actin-like ATPase 74.5 83 0.0018 31.0 13.0 91 74-166 78-173 (342)
147 PTZ00004 actin-2; Provisional 72.7 55 0.0012 32.5 12.0 70 97-170 103-173 (378)
148 PTZ00281 actin; Provisional 72.6 93 0.002 30.9 13.6 91 74-169 80-172 (376)
149 PRK05183 hscA chaperone protei 71.8 1.5E+02 0.0032 31.8 27.8 64 93-158 147-213 (616)
150 PF02075 RuvC: Crossover junct 69.2 15 0.00033 31.7 6.2 56 24-90 1-59 (149)
151 PRK00039 ruvC Holliday junctio 66.4 41 0.00089 29.6 8.5 57 23-90 3-62 (164)
152 PTZ00280 Actin-related protein 66.1 48 0.0011 33.4 10.1 72 97-170 104-184 (414)
153 cd00529 RuvC_resolvase Hollida 65.4 34 0.00073 29.6 7.7 58 24-89 2-59 (154)
154 PRK13327 pantothenate kinase; 65.3 1.2E+02 0.0025 28.5 11.8 113 25-169 4-135 (242)
155 COG2183 Tex Transcriptional ac 65.0 24 0.00052 38.4 7.8 99 21-139 329-428 (780)
156 PRK13329 pantothenate kinase; 64.0 1.3E+02 0.0028 28.3 13.5 18 23-40 2-19 (249)
157 PF04312 DUF460: Protein of un 59.0 49 0.0011 28.3 7.2 31 20-60 30-60 (138)
158 COG4126 Hydantoin racemase [Am 54.7 23 0.0005 32.7 4.8 53 69-137 154-206 (230)
159 COG3734 DgoK 2-keto-3-deoxy-ga 50.2 26 0.00056 33.7 4.6 31 22-61 5-35 (306)
160 TIGR01175 pilM type IV pilus a 49.9 1.7E+02 0.0037 28.3 10.6 28 24-61 190-217 (348)
161 TIGR01129 secD protein-export 49.3 51 0.0011 33.3 6.8 73 25-110 1-79 (397)
162 COG1069 AraB Ribulose kinase [ 48.5 87 0.0019 32.8 8.4 43 257-303 405-447 (544)
163 COG3894 Uncharacterized metal- 48.1 40 0.00086 35.1 5.7 65 21-95 163-248 (614)
164 TIGR00228 ruvC crossover junct 47.8 69 0.0015 28.0 6.6 55 24-90 1-58 (156)
165 KOG1385 Nucleoside phosphatase 47.3 78 0.0017 32.1 7.6 102 21-123 66-172 (453)
166 PF01548 DEDD_Tnp_IS110: Trans 45.1 52 0.0011 27.4 5.4 30 24-62 1-30 (144)
167 TIGR02259 benz_CoA_red_A benzo 41.7 1E+02 0.0023 31.3 7.5 35 22-65 2-37 (432)
168 PRK13325 bifunctional biotin-- 41.6 3.3E+02 0.0071 29.1 11.7 21 21-41 337-357 (592)
169 KOG2708 Predicted metalloprote 38.0 3.5E+02 0.0076 25.5 11.3 122 23-156 3-134 (336)
170 PF07736 CM_1: Chorismate muta 37.3 1.2E+02 0.0027 25.2 6.2 64 69-135 14-78 (118)
171 PF02541 Ppx-GppA: Ppx/GppA ph 35.8 2.5E+02 0.0055 26.4 9.1 94 71-170 34-136 (285)
172 PRK00290 dnaK molecular chaper 33.8 37 0.00081 36.3 3.3 24 21-54 1-24 (627)
173 TIGR01319 glmL_fam conserved h 33.2 1.4E+02 0.0029 30.9 7.0 51 27-89 1-52 (463)
174 PF01968 Hydantoinase_A: Hydan 33.1 38 0.00083 32.5 3.0 19 23-41 78-96 (290)
175 PF05035 DGOK: 2-keto-3-deoxy- 31.8 29 0.00063 33.5 1.9 127 28-170 1-152 (287)
176 COG4972 PilM Tfp pilus assembl 30.6 4.6E+02 0.0099 26.0 9.7 98 24-139 195-326 (354)
177 COG0817 RuvC Holliday junction 30.3 1.4E+02 0.0029 26.3 5.5 55 25-90 1-58 (160)
178 TIGR01796 CM_mono_aroH monofun 29.4 90 0.002 26.0 4.1 35 69-103 14-48 (117)
179 cd02185 AroH Chorismate mutase 29.4 90 0.002 26.0 4.1 35 69-103 14-48 (117)
180 TIGR03281 methan_mark_12 putat 28.6 1.4E+02 0.0031 29.2 5.9 66 241-314 225-290 (326)
181 PF13993 YccJ: YccJ-like prote 28.4 48 0.001 24.3 2.0 26 240-265 18-43 (69)
182 TIGR02350 prok_dnaK chaperone 27.9 52 0.0011 34.9 3.2 23 23-55 1-23 (595)
183 COG4401 AroH Chorismate mutase 27.7 1.6E+02 0.0034 24.4 5.1 34 69-102 16-49 (125)
184 TIGR00143 hypF [NiFe] hydrogen 27.3 1.8E+02 0.004 31.7 7.2 61 244-315 621-684 (711)
185 TIGR03123 one_C_unchar_1 proba 27.1 66 0.0014 31.5 3.4 20 22-41 128-147 (318)
186 cd04256 AAK_P5CS_ProBA AAK_P5C 26.4 2E+02 0.0044 27.5 6.6 73 77-152 105-200 (284)
187 PF00012 HSP70: Hsp70 protein; 26.1 55 0.0012 34.4 3.0 21 24-54 1-21 (602)
188 PRK11678 putative chaperone; P 25.8 55 0.0012 33.6 2.8 67 94-162 148-225 (450)
189 PF00195 Chal_sti_synt_N: Chal 25.7 1.8E+02 0.004 27.0 6.0 48 71-118 98-146 (226)
190 TIGR02148 Fibro_Slime fibro-sl 24.7 45 0.00098 26.4 1.5 22 6-35 27-48 (90)
191 PF10941 DUF2620: Protein of u 24.2 2.2E+02 0.0047 23.7 5.4 46 111-157 11-56 (117)
192 TIGR01865 cas_Csn1 CRISPR-asso 23.3 1.6E+02 0.0034 32.8 5.9 20 22-41 1-20 (805)
193 TIGR03285 methan_mark_14 putat 23.2 7.8E+02 0.017 24.8 10.8 84 250-349 330-413 (445)
194 PRK11678 putative chaperone; P 23.0 3.1E+02 0.0068 28.1 7.7 29 287-322 400-428 (450)
195 PTZ00400 DnaK-type molecular c 22.9 73 0.0016 34.4 3.2 24 21-54 40-63 (663)
196 PLN03184 chloroplast Hsp70; Pr 22.6 78 0.0017 34.3 3.3 24 21-54 38-61 (673)
197 PF07894 DUF1669: Protein of u 20.5 2.1E+02 0.0045 27.6 5.3 51 76-135 134-184 (284)
198 KOG2201 Pantothenate kinase Pa 20.3 8.6E+02 0.019 24.2 11.3 53 252-314 278-330 (371)
No 1
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.3e-43 Score=325.54 Aligned_cols=296 Identities=29% Similarity=0.439 Sum_probs=273.6
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccC-cceEE
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSA-VRAVC 99 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~-v~~Ig 99 (370)
.+++.|||+|.|.++++++|. +++++.+....++|+...+.+.+.+.|+++|+++..+.+.+++. ++++|
T Consensus 2 ~~~y~GvEGgaT~s~~Vivd~---------~~~~~~~a~~~~Tnh~~ig~~~~~~rie~~i~~A~~k~g~d~~~~lr~lg 72 (336)
T KOG1794|consen 2 KDFYGGVEGGATCSRLVIVDE---------DGTILGRAVGGGTNHWLIGSTTCASRIEDMIREAKEKAGWDKKGPLRSLG 72 (336)
T ss_pred CceeEeecCCcceeEEEEECC---------CCCEeeEeeccccccccCCchHHHHHHHHHHHHHHhhcCCCccCccceee
Confidence 468999999999999999998 89999999999999998899999999999999999999999887 89999
Q ss_pred EeecCCCChhhHHHHHHHHHhhCCCCc-eEEEeChHHHHHHhhcCCCCCeEEEEEcccceeeeeccCCceEeeCCCCCCc
Q 017527 100 LAVSGVNHPTDQQRILNWLRDIFPGNV-RLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPIL 178 (370)
Q Consensus 100 IgvpG~~~~~~~~~l~~~L~~~f~~~~-pV~V~NDa~aa~~g~~~g~~~~v~l~~GTGi~g~gii~dG~l~~aGg~G~ll 178 (370)
++++|.++++.+..|.+++++.||.+. .++|.||+..++++...|..+++++++|||+++.+++.||+..++|+|||++
T Consensus 73 L~lSg~d~e~~~~~lv~~~R~~fps~ae~~~v~sDa~~sl~a~t~g~~~GiVLiaGTgs~crl~~~DGs~~~~ggwg~~i 152 (336)
T KOG1794|consen 73 LGLSGTDQEDKNRKLVTEFRDKFPSVAENFYVTSDADGSLAAATPGGEGGIVLIAGTGSNCRLVNPDGSEKGAGGWGHMI 152 (336)
T ss_pred eecccCCchhHHHHHHHHHHHhccchhheeeeehhHHHHHhhcCCCCCCcEEEEecCCceeEEECCCCCccCCCCCCCcc
Confidence 999999999999999999999999644 4999999999998888888999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHHHHHcCCCCC----chhHHHHHHHcCCCChhhHHHHhccCCChHHHhhhHHHHHHHHhcCCHH
Q 017527 179 GDWGSGYGIAAQALTAVIRAYDGRGPD----TMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDEV 254 (370)
Q Consensus 179 gd~Gs~~~iG~~~~~~~~~~~dg~~~~----~~l~~~~~~~~~~~s~~~l~~~~~~~~~~~~~a~~~~~v~~~A~~GD~~ 254 (370)
||+||+|||++++++-+++.+||..+. ..+.+.+.++|++.++.+++.+.|.++++.+++.+.+.+.+.|+.|||.
T Consensus 153 Gd~GSaywia~~Avq~vfda~dg~e~~~~~i~~v~~tif~~~~l~d~l~ml~~~Ys~f~k~riA~f~~kla~~ae~Gd~~ 232 (336)
T KOG1794|consen 153 GDGGSAYWIARQAVQMVFDAEDGFENMMDKIKDVKQTIFKHFNLRDRLQMLEHLYSDFDKHRIALFTEKLAEHAEIGDPL 232 (336)
T ss_pred CCCcchhhhhhhhhhheeehhcCcccccchHHHHHHHHHHHcCCCCHHHHHHHHHhcchHHHHHHHHHHHHhhhhccCHH
Confidence 999999999999999999999998876 5678899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhh--CCCceeeCCCCC
Q 017527 255 ANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRD--YPGAVPIRPKVC 328 (370)
Q Consensus 255 A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~--~p~~~~~~p~~~ 328 (370)
+.+||++++..||+.+.+++..++|+++++ -..+||+.|||+.+++.| .+-+...+... ||..+..+|+..
T Consensus 233 ~~~ifr~Ag~~Lg~~V~aVl~~l~~~~k~g-~~l~Iv~vG~V~~Sw~~l--~~Gfl~sls~~~~f~~~~l~~~k~s 305 (336)
T KOG1794|consen 233 SAEIFRNAGETLGRHVVAVLPQLPPTLKKG-KTLPIVCVGGVFDSWDLL--QEGFLDSLSDTRGFERVELYRPKES 305 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCchhccc-CcceEEEEcchhhHHHHH--HHHHHHHhhcccCccceEEEeeccc
Confidence 999999999999999999999999988876 358999999999999886 77787777663 577776666654
No 2
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.6e-38 Score=294.21 Aligned_cols=272 Identities=31% Similarity=0.453 Sum_probs=234.7
Q ss_pred CCcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEE
Q 017527 20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVC 99 (370)
Q Consensus 20 ~~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~Ig 99 (370)
++.|+||||.|||+|++++.|. +|+++.+...++.|.+..++++++++|.++|.+++.+++.+++++..++
T Consensus 3 ~~~~~lGVDGGGTkt~a~l~~~---------~g~vlg~g~sGpAN~~~~~~e~A~~ni~~ai~~A~~~aG~~~~~i~~~~ 73 (301)
T COG2971 3 PMPYFLGVDGGGTKTRAVLADE---------DGNVLGRGKSGPANIQLVGKEEAVRNIKDAIREALDEAGLKPDEIAAIV 73 (301)
T ss_pred CccEEEEEccCCcceEEEEEcC---------CCcEEEEeccCCceecccchHHHHHHHHHHHHHHHHhcCCCHHHhCcee
Confidence 4569999999999999999998 7999999999999998777799999999999999999999999998887
Q ss_pred EeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhcCCCCCeEEEEEcccceeeeeccCCceEeeCCCCCCcC
Q 017527 100 LAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILG 179 (370)
Q Consensus 100 IgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~~g~~~~v~l~~GTGi~g~gii~dG~l~~aGg~G~llg 179 (370)
.|+.+...+... -...++..++..-.+.|+||+..|+.++. +.++++++++|||+++++. .+|+..|.|+|||++|
T Consensus 74 agla~ag~~~~~--~~~~~~~~l~~a~~v~v~~Dg~iAl~ga~-~~~~Gii~i~GTGSi~~~~-~gg~~~r~GG~Gf~Ig 149 (301)
T COG2971 74 AGLALAGANVEE--AREELERLLPFAGKVDVENDGLIALRGAL-GDDDGIIVIAGTGSIGYGR-KGGRRERVGGWGFPIG 149 (301)
T ss_pred eeeeccCcchhH--HHHHHHHhcCccceEEEecChHHHHhhcc-CCCCCEEEEecCCeEEEEE-eCCeeEEecCcCcccc
Confidence 777777544321 12222444443138999999999999764 4579999999999999988 7899999999999999
Q ss_pred CCCchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhccCC-ChHHHhhhHHHHHHHHhcCCHHHHHH
Q 017527 180 DWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDP-SWARIAALVPVVVSCAEAGDEVANKI 258 (370)
Q Consensus 180 d~Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~~-~~~~~a~~~~~v~~~A~~GD~~A~~i 258 (370)
|+||++|||+++++++++++||+.+.++|.+.++.+|+. +.++++.+.|... ....+++++|.|+++|.+||+.|++|
T Consensus 150 DegSga~ig~~~L~~~lra~DG~~~~t~L~d~v~~~f~~-d~edlv~~~y~a~~~~~~ia~lap~V~~~A~~GD~~A~~I 228 (301)
T COG2971 150 DEGSGAWIGREALQEALRAFDGRREATPLTDAVMAEFNL-DPEDLVAFIYKAGPGDKKIAALAPAVFEAARKGDPVAIRI 228 (301)
T ss_pred ccchHHHHHHHHHHHHHHHhcCCccCChHHHHHHHHhCC-CHHHHHHHHHhcCCchHHHHHhhHHHHHHHHcCCHHHHHH
Confidence 999999999999999999999999999999999999996 8999999988543 44568999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHh
Q 017527 259 LQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILR 315 (370)
Q Consensus 259 l~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~ 315 (370)
+++++.++...+..+. .++ .+.++.+-||++...+.| .+.+++.+..
T Consensus 229 l~~aa~~i~~~~~~l~-~~~-------g~~~l~l~GG~~~~~~~~--~~~~~~~l~~ 275 (301)
T COG2971 229 LKEAAAYIATLLEALS-IFN-------GSEKLSLLGGLAPSYPYY--LSLFRRALLV 275 (301)
T ss_pred HHHHHHHHHHHHHHHh-ccc-------CCceEEEeccccccchhh--HHHHHHHhcC
Confidence 9999999888877775 333 278999999999999888 7777777644
No 3
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=100.00 E-value=2.1e-34 Score=279.36 Aligned_cols=287 Identities=16% Similarity=0.072 Sum_probs=213.0
Q ss_pred EEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEeecC
Q 017527 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSG 104 (370)
Q Consensus 25 lGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgvpG 104 (370)
||||+|+|+++++++|. +|+++.+.+.+.. .+++++++.|.+.+++++++.+....++.+|||++||
T Consensus 1 lgidig~t~~~~~l~d~---------~g~i~~~~~~~~~----~~~~~~~~~l~~~i~~~~~~~~~~~~~i~gIgva~pG 67 (318)
T TIGR00744 1 IGVDIGGTTIKLGVVDE---------EGNILSKWKVPTD----TTPETIVDAIASAVDSFIQHIAKVGHEIVAIGIGAPG 67 (318)
T ss_pred CEEEeCCCEEEEEEECC---------CCCEEEEEEeCCC----CCHHHHHHHHHHHHHHHHHhcCCCccceEEEEEeccc
Confidence 68999999999999999 8999988777653 2578899999999999999888777789999999999
Q ss_pred CCChh-----------h-HHHHHHHHHhhCCCCceEEEeChHHHHHHhhc-C----CCCCeEEEEEcccceeeeeccCCc
Q 017527 105 VNHPT-----------D-QQRILNWLRDIFPGNVRLYVHNDALAALASGT-M----GKLHGCVLIAGTGTIAYGFTEDGR 167 (370)
Q Consensus 105 ~~~~~-----------~-~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~-~----g~~~~v~l~~GTGi~g~gii~dG~ 167 (370)
++++. | +.+|++.|+++|+ +||+++||++++++++. + +.++++|+++|||+ |+|++.||+
T Consensus 68 ~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~--~pv~v~NDa~~~alaE~~~g~~~~~~~~~~v~igtGi-G~giv~~G~ 144 (318)
T TIGR00744 68 PVNRQRGTVYFAVNLDWKQEPLKEKVEARVG--LPVVVENDANAAALGEYKKGAGKGARDVICITLGTGL-GGGIIINGE 144 (318)
T ss_pred cccCCCCEEEecCCCCCCCCCHHHHHHHHHC--CCEEEechHHHHHHHHHHhcccCCCCcEEEEEeCCcc-EEEEEECCE
Confidence 87643 1 2479999999998 89999999999999874 2 35799999999998 678999999
Q ss_pred eEe-----eCCCCCCcCC-CC-chHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHHhhh
Q 017527 168 DAR-----AAGAGPILGD-WG-SGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAAL 240 (370)
Q Consensus 168 l~~-----aGg~G~llgd-~G-s~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~~~~~~~a~~ 240 (370)
+++ +||+||+..+ .| ..|.||+.+|.+.+. +...+.+.+.+.+........+..... .. ...
T Consensus 145 ~~~G~~g~agEiGh~~v~~~g~~~C~cG~~gclE~~~------s~~al~~~~~~~~~~~~~~~~~~~~~~----~~-~~~ 213 (318)
T TIGR00744 145 IRHGHNGVGAEIGHIRMVPDGRLLCNCGKQGCIETYA------SATGLVRYAKRANAKPERAEVLLALGD----GD-GIS 213 (318)
T ss_pred EeecCCCCCcccCceEeCCCCCcccCCCCcchHHHHh------CHHHHHHHHHHHhccccccchhhcccc----cC-CCC
Confidence 976 7888888654 33 456666666543321 111232222222211010011100000 00 124
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCc
Q 017527 241 VPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGA 320 (370)
Q Consensus 241 ~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~~p~~ 320 (370)
.+++++++++||+.|++++++++++||..++++++.|| |+.|||||++....+.| ++.+++.++++....
T Consensus 214 ~~~i~~~~~~gD~~a~~i~~~~~~~L~~~i~~~~~~~d--------P~~IvlgG~~~~~~~~~--~~~i~~~~~~~~~~~ 283 (318)
T TIGR00744 214 AKHVFVAARQGDPVAVDSYREVARWAGAGLADLASLFN--------PSAIVLGGGLSDAGDLL--LDPIRKSYKRWLFGG 283 (318)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCEEEECChhhhCcHHH--HHHHHHHHHHHhhhc
Confidence 57899999999999999999999999999999999999 79999999999877766 999999998754221
Q ss_pred eeeCCCCCccccccccccc-ccccccceeEeeec
Q 017527 321 VPIRPKVCIWPHWHSCDQA-SANCCGAALCRIQL 353 (370)
Q Consensus 321 ~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 353 (370)
..+...|..+..++ ++.+|||++++-++
T Consensus 284 -----~~~~~~i~~s~~~~~~~~~Gaa~~~~~~~ 312 (318)
T TIGR00744 284 -----ARQVADIIAAQLGNDAGLVGAADLARTYI 312 (318)
T ss_pred -----ccCCcEEEEcccCCchhhHHHHHHHHHhc
Confidence 12233455556554 67899998875443
No 4
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=100.00 E-value=1e-33 Score=273.07 Aligned_cols=266 Identities=16% Similarity=0.093 Sum_probs=198.5
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEee
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgv 102 (370)
+++|||+|+|+++++++|. +|+++.+.+.+++. .+++++++.|.+.++++..+.+ .+.+|||++
T Consensus 1 ~~lgidig~t~i~~~l~d~---------~g~i~~~~~~~~~~---~~~~~~~~~i~~~i~~~~~~~~----~~~~igia~ 64 (303)
T PRK13310 1 MYYGFDIGGTKIELGVFNE---------KLELQWEERVPTPR---DSYDAFLDAVCELVAEADQRFG----CKGSVGIGI 64 (303)
T ss_pred CeEEEEeCCCcEEEEEECC---------CCcEEEEEEecCCC---cCHHHHHHHHHHHHHHHHhhcC----CcceEEEeC
Confidence 4799999999999999999 89999888776542 3688999999999988765432 245899999
Q ss_pred cCCCChhh------------HHHHHHHHHhhCCCCceEEEeChHHHHHHhhc-C----CCCCeEEEEEcccceeeeeccC
Q 017527 103 SGVNHPTD------------QQRILNWLRDIFPGNVRLYVHNDALAALASGT-M----GKLHGCVLIAGTGTIAYGFTED 165 (370)
Q Consensus 103 pG~~~~~~------------~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~-~----g~~~~v~l~~GTGi~g~gii~d 165 (370)
||+++++. +.+|+++|+++|+ +||+++||+|++++++. + +.++++++++|||+ |+|++.|
T Consensus 65 pG~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~--~pV~ieNDa~aaalaE~~~g~~~~~~~~~~l~~gtGi-G~giv~~ 141 (303)
T PRK13310 65 PGMPETEDGTLYAANVPAASGKPLRADLSARLG--RDVRLDNDANCFALSEAWDDEFTQYPLVMGLILGTGV-GGGLVFN 141 (303)
T ss_pred CCcccCCCCEEeccCcccccCCcHHHHHHHHHC--CCeEEeccHhHHHHHHhhhccccCCCcEEEEEecCce-EEEEEEC
Confidence 99976431 1489999999998 89999999999999874 3 34799999999998 6789999
Q ss_pred CceEe-----eCCCCCCcCCCC-----------chHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhc
Q 017527 166 GRDAR-----AAGAGPILGDWG-----------SGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTY 229 (370)
Q Consensus 166 G~l~~-----aGg~G~llgd~G-----------s~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~ 229 (370)
|++++ +||+||+..+.. ..|.||+.+| +|.|. |...+.....
T Consensus 142 G~l~~G~~g~aGEiGH~~v~~~~~~~~g~~~~~~~C~CG~~gc--------------------lE~~~--S~~al~~~~~ 199 (303)
T PRK13310 142 GKPISGRSYITGEFGHMRLPVDALTLLGWDAPLRRCGCGQKGC--------------------IENYL--SGRGFEWLYQ 199 (303)
T ss_pred CEEeeCCCCccccccceeecccccccccccCCCccCCCCCcch--------------------HHHhh--cHHHHHHHHH
Confidence 99975 788888765432 1233333333 33332 2223322111
Q ss_pred cCCChHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHH
Q 017527 230 VDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREV 309 (370)
Q Consensus 230 ~~~~~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v 309 (370)
..... ....+++++++++||+.|.+++++++++||..+++++++|| |+.|||||++.. .+.| ++.+
T Consensus 200 -~~~~~--~~~~~~l~~~~~~gd~~a~~~~~~~~~~la~~l~n~~~~ld--------P~~IvlgG~~~~-~~~~--~~~l 265 (303)
T PRK13310 200 -HYYGE--PLQAPEIIALYYQGDEQAVAHVERYLDLLAICLGNILTIVD--------PHLVVLGGGLSN-FDAI--YEQL 265 (303)
T ss_pred -HhccC--CCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHcC--------CCEEEECCcccC-hHHH--HHHH
Confidence 00000 11357889999999999999999999999999999999999 799999999987 5665 7899
Q ss_pred HHHHHhhCCCceeeCCCCCccccccccccc-ccccccceeE
Q 017527 310 VKCILRDYPGAVPIRPKVCIWPHWHSCDQA-SANCCGAALC 349 (370)
Q Consensus 310 ~~~l~~~~p~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~ 349 (370)
++.++++... . .+...|..+..++ ++++|||.++
T Consensus 266 ~~~~~~~~~~-~-----~~~~~i~~s~~~~~a~~~GAa~~~ 300 (303)
T PRK13310 266 PKRLPRHLLP-V-----ARVPRIEKARHGDAGGVRGAAFLH 300 (303)
T ss_pred HHHHHHHhcc-c-----ccCceEEEcccCchHHHHhHHHHh
Confidence 9999875421 1 1244566667665 6688998876
No 5
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.6e-33 Score=271.37 Aligned_cols=279 Identities=19% Similarity=0.177 Sum_probs=205.0
Q ss_pred CCcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEE
Q 017527 20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVC 99 (370)
Q Consensus 20 ~~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~Ig 99 (370)
+..+++|||+|+|+++++++|. +|+++.+.+.+++... ..+.++++|.+.+++++.+.+ ...++.+||
T Consensus 4 ~~~~~lgidIggt~i~~~l~d~---------~g~~l~~~~~~~~~~~--~~~~~~~~i~~~i~~~~~~~~-~~~~~iGIg 71 (314)
T COG1940 4 EAMTVLGIDIGGTKIKVALVDL---------DGEILLRERIPTPTPD--PEEAILEAILALVAELLKQAQ-GRVAIIGIG 71 (314)
T ss_pred cCcEEEEEEecCCEEEEEEECC---------CCcEEEEEEEecCCCC--chhHHHHHHHHHHHHHHHhcC-CcCceEEEE
Confidence 3569999999999999999999 8999988888776543 446899999999999998775 334466666
Q ss_pred EeecCCCChh----------h--HHHHHHHHHhhCCCCceEEEeChHHHHHHhhc-CC----CCCeEEEEEcccceeeee
Q 017527 100 LAVSGVNHPT----------D--QQRILNWLRDIFPGNVRLYVHNDALAALASGT-MG----KLHGCVLIAGTGTIAYGF 162 (370)
Q Consensus 100 IgvpG~~~~~----------~--~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~-~g----~~~~v~l~~GTGi~g~gi 162 (370)
++.||.++.. + ..+|++.|++.|+ +||+|+||+||++++|. +| .++++++++|||+ |+|+
T Consensus 72 i~~pg~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~Pv~veNDan~aalaE~~~g~~~~~~~~~~i~~gtGI-G~gi 148 (314)
T COG1940 72 IPGPGDVDNGTVIVPAPNLGWWNGVDLAEELEARLG--LPVFVENDANAAALAEAWFGAGRGIDDVVYITLGTGI-GGGI 148 (314)
T ss_pred eccceeccCCcEEeecCCCCccccccHHHHHHHHHC--CCEEEecHHHHHHHHHHHhCCCCCCCCEEEEEEccce-eEEE
Confidence 6666655432 1 1469999999998 89999999999999985 44 4789999999998 6689
Q ss_pred ccCCceEe-----eCCCCCCcCCCCchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHH
Q 017527 163 TEDGRDAR-----AAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARI 237 (370)
Q Consensus 163 i~dG~l~~-----aGg~G~llgd~Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~~~~~~~ 237 (370)
+.||++++ +||+||+..+..+.|.||+.+|.+. +. |...+.++.+........
T Consensus 149 v~~g~l~~G~~g~age~Gh~~v~~~g~c~cG~~GclE~--------------------~a--s~~al~~~~~~~~~~~~~ 206 (314)
T COG1940 149 IVNGKLLRGANGNAGEIGHMVVDPDGECGCGRRGCLET--------------------YA--SGRAILRRAAEALESEAG 206 (314)
T ss_pred EECCEEeecCCCccccccceEECCCCccCCCCCCchHH--------------------hc--cHHHHHHHHHhhcccccc
Confidence 99999987 7889998776544355665554322 21 222333221100000000
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEc-CcccCcccccchHHHHHHHHhh
Q 017527 238 AALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVG-GVLEANRRWDIGREVVKCILRD 316 (370)
Q Consensus 238 a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgG-gv~~~~~~~~l~~~v~~~l~~~ 316 (370)
....+++++++.+||+.|++++++++.+|+.+++++++++| |+.||+|| +++...+.+ .+.+++.+.++
T Consensus 207 ~~~~~~i~~~a~~gd~~a~~~~~~~~~~la~~ianl~~~~~--------P~~IvigG~g~~~~~~~~--~~~l~~~~~~~ 276 (314)
T COG1940 207 ELTAKDIFELAAAGDPLAKEVIERAADYLARGLANLINLLD--------PEVIVIGGGGVSALGDLL--LPRLRKLLAKY 276 (314)
T ss_pred CcCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcC--------CCeEEEECcccccchhHH--HHHHHHHHHHh
Confidence 02468899999999999999999999999999999999999 79999999 888877776 88899888886
Q ss_pred CCCceeeCCCCCcccccccccccccccccceeE
Q 017527 317 YPGAVPIRPKVCIWPHWHSCDQASANCCGAALC 349 (370)
Q Consensus 317 ~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 349 (370)
... ....+.+..... ...++++.||+.+.
T Consensus 277 ~~~-~~~~~~~~~~~~---~~~~a~~~ga~~~~ 305 (314)
T COG1940 277 LFP-PVLRPRIVEAAL---GGNDAGLIGAALLA 305 (314)
T ss_pred hcc-hhcccchhhhhc---ccccccchhHHHHH
Confidence 654 211222221110 02346788888876
No 6
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=100.00 E-value=6.6e-33 Score=263.41 Aligned_cols=251 Identities=38% Similarity=0.555 Sum_probs=208.7
Q ss_pred EEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEeecC
Q 017527 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSG 104 (370)
Q Consensus 25 lGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgvpG 104 (370)
||||+|||||+++++|. +|+++.+....+.|+...+.+.++++|.+++++++++.+.++.++..+++|.+|
T Consensus 1 lGIDgGgTkt~~vl~d~---------~g~il~~~~~~~~n~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~~~~g~aG 71 (271)
T PF01869_consen 1 LGIDGGGTKTKAVLVDE---------NGNILGRGKGGGANYNSVGFEEAMENIKEAIEEALSQAGLSPDDIAAICIGAAG 71 (271)
T ss_dssp EEEEECSSEEEEEEEET---------TSEEEEEEEES-TTHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCEEEEEEEE
T ss_pred CEEeeChheeeeEEEeC---------CCCEEEEEEeCCCCCCCCCcchhhhHHHHHHHHHHHHcCCCccccceeeeeEee
Confidence 79999999999999999 899999999999888766788999999999999999999988889999999999
Q ss_pred CCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhcCCCCCeEEEEEcccceeeeeccCCceEeeCCCCCCcCCCCch
Q 017527 105 VNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSG 184 (370)
Q Consensus 105 ~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~~g~~~~v~l~~GTGi~g~gii~dG~l~~aGg~G~llgd~Gs~ 184 (370)
+..+.....+...+.. .++.+.||+..++.++.. +++|+++.|||++++++..+|+..|+|+|||+++|+||+
T Consensus 72 ~~~~~~~~~~~~~~~~-----~~v~~~~Da~~al~~~~~--~~giv~I~GTGS~~~~~~~~g~~~r~gG~G~~~gD~GSg 144 (271)
T PF01869_consen 72 YGRAGDEQEFQEEIVR-----SEVIVVNDAAIALYGATA--EDGIVVIAGTGSIAYGRDRDGRVIRFGGWGHCLGDEGSG 144 (271)
T ss_dssp EEETTTTTHHHHHHHH-----HEEEEEEHHHHHHHHHST--SSEEEEEESSSEEEEEEETTSEEEEEEESCTTTTTTTSH
T ss_pred ecCcccccchhhcceE-----EEEEEEHHHHHHhCCCCC--CcEEEEEcCCCceEEEEEcCCcEEEeCCCCCCcCCCCcH
Confidence 9665544333332222 179999999998886644 689999999999999998899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHHhhhHHHHHHHHhcCCHHHHHHHHHHHH
Q 017527 185 YGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVE 264 (370)
Q Consensus 185 ~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~~~~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~ 264 (370)
+|||+++++..++.+|++.+.+. |. ....+.+++.+++.++++|.+||+.|.+|++++++
T Consensus 145 ~~ig~~~L~~~~~~~d~~~~~~~--------~~------------~~~~~~~~A~fa~~v~~~a~~gd~~a~~Il~~a~~ 204 (271)
T PF01869_consen 145 YWIGRRALRAVLRELDGRAEPTP--------YA------------KPASNARIAVFAPTVFEAAQQGDEVARDILAEAAD 204 (271)
T ss_dssp HHHHHHHHHHHHHHHTTSSTTSH--------HH------------HTT-HHHHHCTHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHhcCccccCc--------cc------------CCCChhheehhhHHHHHHHHcCCchHHHHHHHHHH
Confidence 99999999999999999877655 10 01124567889999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCc
Q 017527 265 ELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGA 320 (370)
Q Consensus 265 ~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~~p~~ 320 (370)
+|++.+..++..++. .++.|++.||++... .+ .+++++.|++..|..
T Consensus 205 ~la~~i~~~~~~~~~------~~~~v~l~GGv~~~~-~~--~~~l~~~l~~~~~~~ 251 (271)
T PF01869_consen 205 ELAELIKAVLKRLGP------EKEPVVLSGGVFKNS-PL--VKALRDALKEKLPKV 251 (271)
T ss_dssp HHHHHHHHHHHTCTC------CCCSEEEESGGGGCH-HH--HHHHGGGS-HHHHCC
T ss_pred HHHHHHHHHHHhcCC------CCCeEEEECCccCch-HH--HHHHHHHHHHhcCCC
Confidence 999999999999984 112399999999864 34 666766666655554
No 7
>PRK09557 fructokinase; Reviewed
Probab=100.00 E-value=8.9e-33 Score=266.33 Aligned_cols=266 Identities=21% Similarity=0.136 Sum_probs=197.8
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEee
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgv 102 (370)
++||||+|+|+++++++|. +|+++.+.+.+++. .+++++++.|.+.++++..+. ..+.+|||++
T Consensus 1 ~~lgidig~t~~~~~l~d~---------~g~i~~~~~~~~~~---~~~~~~~~~i~~~i~~~~~~~----~~~~gIgi~~ 64 (301)
T PRK09557 1 MRIGIDLGGTKIEVIALDD---------AGEELFRKRLPTPR---DDYQQTIEAIATLVDMAEQAT----GQRGTVGVGI 64 (301)
T ss_pred CEEEEEECCCcEEEEEECC---------CCCEEEEEEecCCC---CCHHHHHHHHHHHHHHHHhhc----CCceEEEecC
Confidence 4799999999999999999 89999888776542 267888999999888877543 2467999999
Q ss_pred cCCCChh----------h--HHHHHHHHHhhCCCCceEEEeChHHHHHHhhc-C----CCCCeEEEEEcccceeeeeccC
Q 017527 103 SGVNHPT----------D--QQRILNWLRDIFPGNVRLYVHNDALAALASGT-M----GKLHGCVLIAGTGTIAYGFTED 165 (370)
Q Consensus 103 pG~~~~~----------~--~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~-~----g~~~~v~l~~GTGi~g~gii~d 165 (370)
||+++++ | ..+|++.|+++|+ .||+++||++|+++++. + +.++++++++|||+ |+|++.|
T Consensus 65 pG~vd~~~g~i~~~~~~~~~~~~l~~~l~~~~~--~pv~~~NDa~aaA~aE~~~g~~~~~~~~~~l~igtGi-G~giv~~ 141 (301)
T PRK09557 65 PGSISPYTGLVKNANSTWLNGQPLDKDLSARLN--REVRLANDANCLAVSEAVDGAAAGKQTVFAVIIGTGC-GAGVAIN 141 (301)
T ss_pred cccCcCCCCeEEecCCccccCCCHHHHHHHHHC--CCEEEccchhHHHHHHHHhcccCCCCcEEEEEEccce-EEEEEEC
Confidence 9997643 2 2579999999998 89999999999999874 2 34789999999998 6689999
Q ss_pred CceEe-----eCCCCCCcCCC----------CchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhcc
Q 017527 166 GRDAR-----AAGAGPILGDW----------GSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYV 230 (370)
Q Consensus 166 G~l~~-----aGg~G~llgd~----------Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~ 230 (370)
|++++ +||+||+..++ |..|.||+.+| +|.+. |...+.+....
T Consensus 142 G~l~~G~~g~aGEiGH~~v~~~~~~~~~~~~g~~c~cG~~Gc--------------------lE~~~--S~~al~~~~~~ 199 (301)
T PRK09557 142 GRVHIGGNGIAGEWGHNPLPWMDEDELRYRNEVPCYCGKQGC--------------------IETFI--SGTGFATDYRR 199 (301)
T ss_pred CEEEecCCCCCcccCceecccccccccccCCCCcCCCCCCCE--------------------EeEEE--cHHHHHHHHHH
Confidence 99976 78888875431 22333333322 22222 22233332110
Q ss_pred CCChHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHH
Q 017527 231 DPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVV 310 (370)
Q Consensus 231 ~~~~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~ 310 (370)
... . ....+++++++++||+.|.+++++++++||.++.++++.|| |+.|||||+++.. +.| ++.++
T Consensus 200 ~~~-~--~~~~~~l~~~~~~gd~~a~~~l~~~~~~La~~l~~l~~~ld--------P~~IvlgG~~~~~-~~~--~~~l~ 265 (301)
T PRK09557 200 LSG-K--ALKGSEIIRLVEEGDPVAELAFRRYEDRLAKSLAHVINILD--------PDVIVLGGGMSNV-DRL--YPTLP 265 (301)
T ss_pred hcc-C--CCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCEEEEcCcccch-HHH--HHHHH
Confidence 000 0 11357889999999999999999999999999999999999 7999999999874 555 88899
Q ss_pred HHHHhhCCCceeeCCCCCccccccccccc-ccccccceeE
Q 017527 311 KCILRDYPGAVPIRPKVCIWPHWHSCDQA-SANCCGAALC 349 (370)
Q Consensus 311 ~~l~~~~p~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~ 349 (370)
+.++++..... ...+|..+..++ ++++|||.++
T Consensus 266 ~~~~~~~~~~~------~~~~i~~s~~~~~a~~~GAa~~~ 299 (301)
T PRK09557 266 ALLKQYVFGGE------CETPVRKALHGDSSGVRGAAWLW 299 (301)
T ss_pred HHHHHHhcccc------cCCeEEEcccCCchhhhhhhHhh
Confidence 99988653221 134455566555 6688988764
No 8
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=99.98 E-value=1.3e-31 Score=256.93 Aligned_cols=260 Identities=16% Similarity=0.128 Sum_probs=194.6
Q ss_pred EEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEeec
Q 017527 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVS 103 (370)
Q Consensus 24 vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgvp 103 (370)
+||||+|+|+++++++|. +|+++.+.+.+++.. .+++.+++.+.+.++++.. ++.+|||++|
T Consensus 3 ~lgvdig~~~i~~~l~dl---------~g~i~~~~~~~~~~~--~~~~~~~~~i~~~i~~~~~-------~~~~igi~~p 64 (291)
T PRK05082 3 TLAIDIGGTKIAAALVGE---------DGQIRQRRQIPTPAS--QTPEALRQALSALVSPLQA-------QADRVAVAST 64 (291)
T ss_pred EEEEEECCCEEEEEEEcC---------CCcEEEEEEecCCCC--CCHHHHHHHHHHHHHHhhh-------cCcEEEEeCc
Confidence 799999999999999999 899998877665432 2577788888888877653 4679999999
Q ss_pred CCCChh------------h-HHHHHHHHHhhCCCCceEEEeChHHHHHHhhc-C---CCCCeEEEEEcccceeeeeccCC
Q 017527 104 GVNHPT------------D-QQRILNWLRDIFPGNVRLYVHNDALAALASGT-M---GKLHGCVLIAGTGTIAYGFTEDG 166 (370)
Q Consensus 104 G~~~~~------------~-~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~-~---g~~~~v~l~~GTGi~g~gii~dG 166 (370)
|+++.. | ..+|++.|+++|+ +||+++||++++++++. + +.++++++.+|||+ |+|++.||
T Consensus 65 G~vd~~~~~~~~~~~~~~w~~~~l~~~l~~~~~--~pv~v~NDa~a~a~aE~~~g~~~~~~~~~l~ig~Gi-G~giv~~G 141 (291)
T PRK05082 65 GIINDGILTALNPHNLGGLLHFPLVQTLEQLTD--LPTIALNDAQAAAWAEYQALPDDIRNMVFITVSTGV-GGGIVLNG 141 (291)
T ss_pred ccccCCeeEEecCCCCccccCCChHHHHHHHhC--CCEEEECcHHHHHHHHHHhcCCCCCCEEEEEECCCc-ceEEEECC
Confidence 986521 2 2479999999998 89999999999998874 2 34789999999998 66899999
Q ss_pred ceEe-----eCCCCCCcCCC-CchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHHhhh
Q 017527 167 RDAR-----AAGAGPILGDW-GSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAAL 240 (370)
Q Consensus 167 ~l~~-----aGg~G~llgd~-Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~~~~~~~a~~ 240 (370)
++++ +||+||+..+. |.-|.||+.+| +|.+. |...+.+...... . ...
T Consensus 142 ~~~~G~~g~AGEiGh~~v~~~g~~c~CG~~Gc--------------------lE~~~--S~~al~~~~~~~~---~-~~~ 195 (291)
T PRK05082 142 KLLTGPGGLAGHIGHTLADPHGPVCGCGRRGC--------------------VEAIA--SGRAIAAAAQGWL---A-GCD 195 (291)
T ss_pred EEeeCCCCccccccceEecCCCCCCCCCCcCc--------------------hhhhc--CHHHHHHHHHHhh---c-CCC
Confidence 9865 88899986643 34444555443 22221 2223332111000 0 113
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCc
Q 017527 241 VPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGA 320 (370)
Q Consensus 241 ~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~~p~~ 320 (370)
...+++++.+||+.|.+++++++++||..+.+++++|| |+.|||||++.. .+.| ++.+++.+++. +..
T Consensus 196 ~~~i~~~~~~gd~~a~~~~~~~~~~la~~l~~l~~~~d--------pe~IvlgG~~~~-~~~~--~~~i~~~l~~~-~~~ 263 (291)
T PRK05082 196 AKTIFERAGQGDEQAQALINRSAQAIARLIADLKATLD--------CQCVVLGGSVGL-AEGY--LELVQAYLAQE-PAI 263 (291)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCEEEEcCcccc-HHHH--HHHHHHHHHhc-ccc
Confidence 46789999999999999999999999999999999999 799999999875 4455 78899888873 221
Q ss_pred eeeCCCCCccccccccccc-ccccccceeE
Q 017527 321 VPIRPKVCIWPHWHSCDQA-SANCCGAALC 349 (370)
Q Consensus 321 ~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~ 349 (370)
....+..+..++ ++++|||.++
T Consensus 264 -------~~~~i~~s~~~~~~~~~GAa~~~ 286 (291)
T PRK05082 264 -------YHVPLLAAHYRHDAGLLGAALWA 286 (291)
T ss_pred -------cCCeEEECccCCchhhhhHHHHh
Confidence 134566666655 6788999876
No 9
>PRK09698 D-allose kinase; Provisional
Probab=99.98 E-value=1.5e-31 Score=257.77 Aligned_cols=272 Identities=14% Similarity=0.143 Sum_probs=197.5
Q ss_pred CCcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEE
Q 017527 20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVC 99 (370)
Q Consensus 20 ~~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~Ig 99 (370)
|..+++|||+|+|+++++++|. +|+++.+.+.+++.. .+++. ++.+.+.+++++++.+ .++.+||
T Consensus 2 ~~~~~lgidig~t~i~~~l~d~---------~g~i~~~~~~~~~~~--~~~~~-~~~l~~~i~~~~~~~~---~~i~gig 66 (302)
T PRK09698 2 QKNVVLGIDMGGTHIRFCLVDA---------EGEILHCEKKRTAEV--IAPDL-VSGLGEMIDEYLRRFN---ARCHGIV 66 (302)
T ss_pred CccEEEEEEcCCcEEEEEEEcC---------CCCEEEEEEeCCccc--cchHH-HHHHHHHHHHHHHHcC---CCeeEEE
Confidence 4579999999999999999999 899999887766533 24554 9999999999998764 4799999
Q ss_pred EeecCCCChh--------------h-HHHHHHHHHhhCCCCceEEEeChHHHHHHhhc-C---CCCCeEEEEEcccceee
Q 017527 100 LAVSGVNHPT--------------D-QQRILNWLRDIFPGNVRLYVHNDALAALASGT-M---GKLHGCVLIAGTGTIAY 160 (370)
Q Consensus 100 IgvpG~~~~~--------------~-~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~-~---g~~~~v~l~~GTGi~g~ 160 (370)
|++||+++++ | ..+|++.|+++|+ +||+++||++++++++. . +..+++++++|||+ |+
T Consensus 67 ia~pG~vd~~~g~i~~~~~~~~~~~~~~~l~~~l~~~~~--~pv~v~NDa~aaa~~E~~~~~~~~~~~~~v~lgtGI-G~ 143 (302)
T PRK09698 67 MGFPALVSKDRRTVISTPNLPLTALDLYDLADKLENTLN--CPVFFSRDVNLQLLWDVKENNLTQQLVLGAYLGTGM-GF 143 (302)
T ss_pred EeCCcceeCCCCEEEecCCCCccccccCCHHHHHHHHhC--CCEEEcchHhHHHHHHHHhcCCCCceEEEEEecCce-EE
Confidence 9999986532 1 1379999999998 89999999999988774 2 34689999999998 66
Q ss_pred eeccCCceEe-----eCCCCCCcCC-CCchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCCh
Q 017527 161 GFTEDGRDAR-----AAGAGPILGD-WGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSW 234 (370)
Q Consensus 161 gii~dG~l~~-----aGg~G~llgd-~Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~~~~ 234 (370)
|++.||++++ +||+||+..+ .+.-|.||+.+|. |.+. |...+.++......
T Consensus 144 giv~~G~~~~G~~g~agEiGh~~v~~~~~~C~CG~~gcl--------------------E~~~--S~~al~~~~~~~~~- 200 (302)
T PRK09698 144 AVWMNGAPWTGAHGVAGELGHIPLGDMTQHCGCGNPGCL--------------------ETNC--SGMALRRWYEQQPR- 200 (302)
T ss_pred EEEECCEEeeCCCCCccccCceEeeCCCcccCCCCccch--------------------Hhhc--CHHHHHHHHHHhcC-
Confidence 8999999975 8888888653 3344555544432 2222 22233322110000
Q ss_pred HHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHH
Q 017527 235 ARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCIL 314 (370)
Q Consensus 235 ~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~ 314 (370)
.....++++. .+|. .+++++.++||..|++++++|| |+.|||||++....+.+ .+.+++.++
T Consensus 201 ---~~~~~~l~~~--~~~~---~~~~~~~~~la~~l~~li~~ld--------P~~IvlgG~~~~~~~~~--~~~l~~~~~ 262 (302)
T PRK09698 201 ---DYPLSDLFVH--AGDH---PFIQSLLENLARAIATSINLFD--------PDAIILGGGVMDMPAFP--RETLIAMIQ 262 (302)
T ss_pred ---CCCHHHHHHH--cCCH---HHHHHHHHHHHHHHHHHHHHhC--------CCEEEEcCccccCchhH--HHHHHHHHH
Confidence 0123455554 3665 4788999999999999999999 79999999999877665 899999998
Q ss_pred hhCCCceeeCCCCCccccccccccc-ccccccceeEeeecc
Q 017527 315 RDYPGAVPIRPKVCIWPHWHSCDQA-SANCCGAALCRIQLY 354 (370)
Q Consensus 315 ~~~p~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 354 (370)
++...+. .....+|..+..++ ++.+|||.+++-+++
T Consensus 263 ~~~~~~~----~~~~~~i~~~~~~~~a~~~GAa~~~~~~~~ 299 (302)
T PRK09698 263 KYLRKPL----PYEVVRFIYASSSDFNGAQGAAILAHQRFL 299 (302)
T ss_pred HHccCcc----ccCCcEEEECCcCCcccHHhHHHHHHHhhc
Confidence 8653322 12244555566555 668999988754443
No 10
>PRK12408 glucokinase; Provisional
Probab=99.97 E-value=2e-29 Score=246.87 Aligned_cols=274 Identities=18% Similarity=0.119 Sum_probs=180.9
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCC------eEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccC
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLP------VLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSA 94 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~------il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~ 94 (370)
+.++|++||||||++++++|. ++. ++...+.++... +.+.+++++++++ . .+
T Consensus 15 ~~~~L~~DIGGT~i~~al~d~---------~g~~~~~~~~~~~~~~~t~~~---------~~~~~~i~~~~~~-~---~~ 72 (336)
T PRK12408 15 PESFVAADVGGTHVRVALVCA---------SPDAAKPVELLDYRTYRCADY---------PSLAAILADFLAE-C---AP 72 (336)
T ss_pred cccEEEEEcChhhhheeEEec---------cCCccccccccceeEecCCCc---------cCHHHHHHHHHhc-C---CC
Confidence 456899999999999999987 565 444444443322 2344555566654 1 35
Q ss_pred cceEEEeecCC-CChh-------hHHHHHHHHHhhCCCCc-eEEEeChHHHHHHhhc-C---------C----C-CCeEE
Q 017527 95 VRAVCLAVSGV-NHPT-------DQQRILNWLRDIFPGNV-RLYVHNDALAALASGT-M---------G----K-LHGCV 150 (370)
Q Consensus 95 v~~IgIgvpG~-~~~~-------~~~~l~~~L~~~f~~~~-pV~V~NDa~aa~~g~~-~---------g----~-~~~v~ 150 (370)
+.+||||+||+ .+.. .|..+.+.|++.|+ + ||+++||+||+++++. + | . .++++
T Consensus 73 ~~~igIg~pG~~~~~g~v~~~nl~w~~~~~~l~~~~~--~~~V~l~ND~naaa~gE~~~~~~~~~~~~g~~~~~~~~~~~ 150 (336)
T PRK12408 73 VRRGVIASAGYALDDGRVITANLPWTLSPEQIRAQLG--LQAVHLVNDFEAVAYAAPYMEGNQVLQLSGPAQAAAGPALV 150 (336)
T ss_pred cCEEEEEecCCceECCEEEecCCCCccCHHHHHHHcC--CCeEEEeecHHHHHcccccCCHhHeeeecCCCCCCCCcEEE
Confidence 88999999998 3210 12347799999998 7 5999999999999874 4 2 2 47899
Q ss_pred EEEcccceeeeeccCCc---eEeeCCCCCCcCCCCchHHH--HHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHH
Q 017527 151 LIAGTGTIAYGFTEDGR---DARAAGAGPILGDWGSGYGI--AAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELI 225 (370)
Q Consensus 151 l~~GTGi~g~gii~dG~---l~~aGg~G~llgd~Gs~~~i--G~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~ 225 (370)
+++|||+ |+|+++||+ ...+||+||+..+..+.-+. -...| +... + .+.|.+. |...+.
T Consensus 151 i~~GTGi-Gggivi~g~~g~~~~agE~GH~~~~~~~~~~~~l~~~~~--------~~~~-~----~~~E~~~--Sg~gL~ 214 (336)
T PRK12408 151 LGPGTGL-GAALWIPNGGRPVVLPTEAGQAALAAASELEMQLLQHLL--------RTRT-H----VPIEHVL--SGPGLL 214 (336)
T ss_pred EECCCcc-eEEEEEcCCCceeeecCccccccCCCCCHHHHHHHHHHH--------hhCC-c----eeHhhee--cHHHHH
Confidence 9999998 557888886 34599999986543321110 01001 0000 0 0123332 222332
Q ss_pred HHhcc---CCChHHHhhhHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcc-EEEEcCcccC-
Q 017527 226 GWTYV---DPSWARIAALVPVVVSCAEAG-DEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFP-LVMVGGVLEA- 299 (370)
Q Consensus 226 ~~~~~---~~~~~~~a~~~~~v~~~A~~G-D~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~-VVlgGgv~~~- 299 (370)
+++.. ..........+++|++++++| |+.|++++++++++||..+.+++++|| |+. ||||||++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~v~~~a~~ggD~~A~~~~~~~~~~La~~i~nl~~~ld--------Pe~GIvIGGGIs~~~ 286 (336)
T PRK12408 215 NLYRALCALRGATPVHASPAAITAAALAGDDALAHEALQVFCGFLGSVVGDMALAYG--------ARGGVYLAGGILPQI 286 (336)
T ss_pred HHHHHHHhhcCCCcccCCHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCceEEEECchhHhH
Confidence 22110 000000012457899988886 999999999999999999999999999 799 9999999875
Q ss_pred cccccchHH--HHHHHHhhCCCceeeCCCCCcccccccccccccccccceeE
Q 017527 300 NRRWDIGRE--VVKCILRDYPGAVPIRPKVCIWPHWHSCDQASANCCGAALC 349 (370)
Q Consensus 300 ~~~~~l~~~--v~~~l~~~~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 349 (370)
.+.+ .++ +++.+++ .+. .+..+.+.|..+.+++++++|||+++
T Consensus 287 ~~~l--~~~~f~~~~~~~-~~~----~~~~~~~~I~~~~~~~agl~GAa~~~ 331 (336)
T PRK12408 287 ADFL--ARSDFVERFLNK-GPM----RPALEQVPVKLVEHGQLGVLGAASWY 331 (336)
T ss_pred Hhhh--cCHHHHHHHhcc-Cch----hhHhcCCCEEEEeCCChHHHHHHHHH
Confidence 4444 444 5555554 322 22455777888888889999999765
No 11
>PRK00292 glk glucokinase; Provisional
Probab=99.96 E-value=2.1e-29 Score=244.54 Aligned_cols=277 Identities=14% Similarity=0.015 Sum_probs=181.0
Q ss_pred cEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHH-cCCCccCcceEEE
Q 017527 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLK-SGSNRSAVRAVCL 100 (370)
Q Consensus 22 ~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~-~~~~~~~v~~IgI 100 (370)
.++||+|+|||+++++++|.. .+.++.+.+.++.. .+.+.+.+.+++++ .+ .++.+|||
T Consensus 2 ~~~lgiDIGgT~i~~~l~~~~--------~~~~~~~~~~~~~~---------~~~~~~~l~~~l~~~~~---~~~~gigI 61 (316)
T PRK00292 2 KPALVGDIGGTNARFALCDWA--------NGEIEQIKTYATAD---------YPSLEDAIRAYLADEHG---VQVRSACF 61 (316)
T ss_pred ceEEEEEcCccceEEEEEecC--------CCceeeeEEEecCC---------CCCHHHHHHHHHHhccC---CCCceEEE
Confidence 379999999999999999951 35567666665432 12245555555554 22 36889999
Q ss_pred eecCCCChh--------hHHHHHHHHHhhCCCCce-EEEeChHHHHHHhhcC---------C------CCCeEEEEEccc
Q 017527 101 AVSGVNHPT--------DQQRILNWLRDIFPGNVR-LYVHNDALAALASGTM---------G------KLHGCVLIAGTG 156 (370)
Q Consensus 101 gvpG~~~~~--------~~~~l~~~L~~~f~~~~p-V~V~NDa~aa~~g~~~---------g------~~~~v~l~~GTG 156 (370)
|+||++++. |.. ..+.|+++|+ +| |+++||+||+++++.. | ..+++++++|||
T Consensus 62 g~pG~vd~~~i~~~n~~w~~-~~~~l~~~~~--~p~v~l~ND~~aaalgE~~~~~~~~~~~g~~~~~~~~~~~~v~~GTG 138 (316)
T PRK00292 62 AIAGPVDGDEVRMTNHHWAF-SIAAMKQELG--LDHLLLINDFTAQALAIPRLGEEDLVQIGGGEPVPGAPIAVIGPGTG 138 (316)
T ss_pred EEeCcccCCEEEecCCCccc-CHHHHHHHhC--CCeEEEEecHHHHHcccccCCHhheeEeCCCCCCCCCcEEEEEcCCc
Confidence 999997642 222 3688999998 85 9999999999998742 2 267899999999
Q ss_pred ceeeeeccCC---ceEeeCCCCCCcCCCCchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhc---c
Q 017527 157 TIAYGFTEDG---RDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTY---V 230 (370)
Q Consensus 157 i~g~gii~dG---~l~~aGg~G~llgd~Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~---~ 230 (370)
+ |+|+++|| ....+||+||+..+..+.-+.....+ ....-++ .++|.+. |...|.++.. .
T Consensus 139 i-G~giv~~g~~g~~g~agE~GH~~~~~~~~~~~~~~~~---~c~~~~~--------gclE~~~--Sg~~L~~~~~~~~~ 204 (316)
T PRK00292 139 L-GVAGLVPVDGRWIVLPGEGGHVDFAPRSEEEAQILQY---LRAEFGH--------VSAERVL--SGPGLVNLYRAICK 204 (316)
T ss_pred c-eEEEEEecCCceEEccCCcccccCCCCChHHHHHHHH---HHHhcCC--------ceeEeee--cHHhHHHHHHHHHh
Confidence 8 66788886 22348999999765543221110000 0000011 0122222 2222222110 0
Q ss_pred CCChHHHhhhHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCc-cEEEEcCccc-CcccccchH
Q 017527 231 DPSWARIAALVPVVVSCAEAGD-EVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSF-PLVMVGGVLE-ANRRWDIGR 307 (370)
Q Consensus 231 ~~~~~~~a~~~~~v~~~A~~GD-~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~-~VVlgGgv~~-~~~~~~l~~ 307 (370)
......-....++|+++|++|| +.|++++++++++||..+++++++|| |+ .|||+||++. ..+.+ .+
T Consensus 205 ~~~~~~~~~~~~~i~~~a~~gdd~~A~~~~~~~~~~lg~~i~~l~~~~~--------P~~~vvi~Gg~~~~~~~~~--~~ 274 (316)
T PRK00292 205 ADGREPELLTPADITERALAGSCPLCRRTLSLFCVILGRVAGNLALTLG--------ARGGVYIAGGIVPRFLEFF--KA 274 (316)
T ss_pred hcCCCcccCCHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHhc--------CCceEEEeCchHHhHHhhh--cc
Confidence 0000000014578999999998 99999999999999999999999999 78 9999999985 55554 55
Q ss_pred -HHHHHHHhhCCCceeeCCCCCcccccccccccccccccceeE
Q 017527 308 -EVVKCILRDYPGAVPIRPKVCIWPHWHSCDQASANCCGAALC 349 (370)
Q Consensus 308 -~v~~~l~~~~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 349 (370)
.+++.+.++.+.+. ..+...++....++++++|||+++
T Consensus 275 ~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~agl~GAa~~~ 313 (316)
T PRK00292 275 SGFRAAFEDKGRFSA----YLADIPVYVITHPQPGLLGAGAYL 313 (316)
T ss_pred HHHHHHHhcCCChhh----HHhcCCEEEEcCCChHHHHHHHHH
Confidence 67888877443332 122334444556678899999876
No 12
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=99.96 E-value=4.8e-28 Score=228.41 Aligned_cols=212 Identities=15% Similarity=0.101 Sum_probs=158.2
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEee
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgv 102 (370)
+++|||+|+|+++++++|. +|+++.+.+.+++. .+++++++.+.++++++.... ..+.+|||++
T Consensus 1 ~~lgidiggt~i~~~l~d~---------~g~i~~~~~~~~~~---~~~~~~~~~i~~~i~~~~~~~----~~~~gIgv~~ 64 (256)
T PRK13311 1 MYYGFDMGGTKIELGVFDE---------NLQRIWHKRVPTPR---EDYPQLLQILRDLTEEADTYC----GVQGSVGIGI 64 (256)
T ss_pred CEEEEEECCCcEEEEEECC---------CCCEEEEEEecCCC---cCHHHHHHHHHHHHHHHHhhc----CCCceEEEEe
Confidence 4799999999999999999 89999888877642 257788888888887765422 2346999999
Q ss_pred cCCCChh-----------h-HHHHHHHHHhhCCCCceEEEeChHHHHHHhhc-CC----CCCeEEEEEcccceeeeeccC
Q 017527 103 SGVNHPT-----------D-QQRILNWLRDIFPGNVRLYVHNDALAALASGT-MG----KLHGCVLIAGTGTIAYGFTED 165 (370)
Q Consensus 103 pG~~~~~-----------~-~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~-~g----~~~~v~l~~GTGi~g~gii~d 165 (370)
||+++++ | ..+|++.|+++|+ .||+++||+|++++++. +| .++++++++|||+ |+|++.|
T Consensus 65 pG~vd~~~g~i~~~~~~~w~~~~l~~~l~~~~~--~pV~leNDanaaAlaE~~~g~~~~~~~~v~i~lgtGi-G~giv~~ 141 (256)
T PRK13311 65 PGLPNADDGTVFTANVPSAMGQPLQADLSRLIQ--REVRIDNDANCFALSEAWDPEFRTYPTVLGLILGTGV-GGGLIVN 141 (256)
T ss_pred cCcEECCCCEEEccCCCcccCCChHHHHHHHHC--CCEEEEchhhHHHHHHHHhcCCCCCCcEEEEEECcCe-EEEEEEC
Confidence 9986532 1 2489999999998 89999999999999884 33 4799999999998 6789999
Q ss_pred CceEe-----eCCCCCCcC--CC---------CchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhc
Q 017527 166 GRDAR-----AAGAGPILG--DW---------GSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTY 229 (370)
Q Consensus 166 G~l~~-----aGg~G~llg--d~---------Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~ 229 (370)
|++++ +||+||+.. +. +..|.||+.+| +|.+. |...+.+. +
T Consensus 142 G~l~~G~~g~AGEiGh~~v~~~~~~~~~~~~~~~~c~cG~~Gc--------------------lE~~~--S~~ai~~~-~ 198 (256)
T PRK13311 142 GSIVSGRNHITGEFGHFRLPVDALDILGADIPRVPCGCGHRGC--------------------IENYI--SGRGFEWM-Y 198 (256)
T ss_pred CEEecCCCCCCccceeEEeccCcccccccCCCCCcCCCCCccc--------------------hhhee--cHHHHHHH-H
Confidence 99976 788888753 21 22333333332 33332 33333221 1
Q ss_pred cCCChHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017527 230 VDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLS 278 (370)
Q Consensus 230 ~~~~~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~ 278 (370)
.... .. ....+.|++++++||+.|++++++++++||..+++++++|+
T Consensus 199 ~~~~-~~-~~~~~~l~~~~~~gd~~a~~~~~~~~~~la~~i~nl~~~~~ 245 (256)
T PRK13311 199 SHFY-QH-TLPATDIIAHYAAGEPKAVAHVERFMDVLAVCLGNLLTMLG 245 (256)
T ss_pred HHhc-cC-CCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 0000 00 12457899999999999999999999999999999999999
No 13
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=99.95 E-value=2.7e-27 Score=249.87 Aligned_cols=287 Identities=14% Similarity=0.007 Sum_probs=190.4
Q ss_pred CCcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEE
Q 017527 20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVC 99 (370)
Q Consensus 20 ~~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~Ig 99 (370)
..+++||+||||||++++++|. +|+++.+.+.++... +.+.+++++++++.+. .++.+||
T Consensus 16 ~~~~~L~iDIGGT~ir~al~~~---------~g~i~~~~~~~t~~~---------~~~~~~i~~~l~~~~~--~~~~~ig 75 (638)
T PRK14101 16 ADGPRLLADVGGTNARFALETG---------PGEITQIRVYPGADY---------PTLTDAIRKYLKDVKI--GRVNHAA 75 (638)
T ss_pred CCCCEEEEEcCchhheeeeecC---------CCcccceeEEecCCC---------CCHHHHHHHHHHhcCC--CCcceEE
Confidence 3457999999999999999987 789888877766432 3466677777766543 3589999
Q ss_pred EeecCCCChh--------hHHHHHHHHHhhCCCCc-eEEEeChHHHHHHhh---------cCC----CCCeEEEEEccc-
Q 017527 100 LAVSGVNHPT--------DQQRILNWLRDIFPGNV-RLYVHNDALAALASG---------TMG----KLHGCVLIAGTG- 156 (370)
Q Consensus 100 IgvpG~~~~~--------~~~~l~~~L~~~f~~~~-pV~V~NDa~aa~~g~---------~~g----~~~~v~l~~GTG- 156 (370)
||+||+++.. |..++ +.|++.|+ + ||.++||++|+++++ ++| ..+++++++|||
T Consensus 76 ig~pGpVd~~~~~~~nl~w~~~~-~~l~~~~g--~~~v~l~ND~~aaA~ge~~l~~~e~~~~G~g~~~~~~~~~~lGtGT 152 (638)
T PRK14101 76 IAIANPVDGDQVRMTNHDWSFSI-EATRRALG--FDTLLVVNDFTALAMALPGLTDAQRVQVGGGTRRQNSVIGLLGPGT 152 (638)
T ss_pred EEEecCccCCeeeecCCCcEecH-HHHHHHcC--CCeEEEEchHHHHHcCCccCCHHHeEEeCCCCCCCCCcEEEEECCc
Confidence 9999997642 33455 88999998 6 589999999999983 233 367888887554
Q ss_pred -ceeeeec-cCCc-eEeeCCCCCCcCCCCchHHHHHHH--HHHH-HHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhcc
Q 017527 157 -TIAYGFT-EDGR-DARAAGAGPILGDWGSGYGIAAQA--LTAV-IRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYV 230 (370)
Q Consensus 157 -i~g~gii-~dG~-l~~aGg~G~llgd~Gs~~~iG~~~--~~~~-~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~ 230 (370)
+++++++ .+|+ +...+|+||+..+....-+..... +... ..+.+...+.+++.+....... ...
T Consensus 153 GlG~a~lv~~~g~~~~~g~E~GH~~~~~~~~~e~~~~~~~~~~~g~~~~E~~~Sg~gL~~~~~~~~~----------~~~ 222 (638)
T PRK14101 153 GLGVSGLIPADDRWIALGSEGGHASFAPQDEREDLVLQYARKKYPHVSFERVCAGPGMEIIYRALAA----------RDK 222 (638)
T ss_pred cceeeEEEecCCeeEECCCCccccCCCCCCHHHHHHHHHHHHhcCcceeeeecchhhHHHHHHHHHh----------hcC
Confidence 5333353 6777 678899999865433211111000 0000 0001111122222221111100 000
Q ss_pred CCChHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccch-HHH
Q 017527 231 DPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIG-REV 309 (370)
Q Consensus 231 ~~~~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~-~~v 309 (370)
..... ...+++|+++|++||+.|++++++++++||..+.++++++|+ |+.||||||++.....+ +. ..|
T Consensus 223 ~~~~~--~~~~~~i~~~a~~gd~~A~~~~~~~~~~lg~~~~nl~~~~~~-------p~~vvigGGIs~~~~~~-l~~~~f 292 (638)
T PRK14101 223 KRVAA--NVDTAEIVERAHAGDALALEAVECFCAILGTFAGNLALTLGA-------LGGIYIGGGVVPKLGEL-FTRSSF 292 (638)
T ss_pred CCCcC--cCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC-------CCcEEEeCcHHHHHHHH-cChHHH
Confidence 00000 124688999999999999999999999999999999999985 79999999998654333 24 367
Q ss_pred HHHHHhhCCCceeeCCCCCcccccccccccccccccceeEeeec
Q 017527 310 VKCILRDYPGAVPIRPKVCIWPHWHSCDQASANCCGAALCRIQL 353 (370)
Q Consensus 310 ~~~l~~~~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (370)
++.+...-|... -++...+++-.+..++++|||+++.=||
T Consensus 293 ~~~f~~kg~~~~----~~~~ipv~~i~~~~~~l~Gaa~~~~~~~ 332 (638)
T PRK14101 293 RARFEAKGRFEA----YLANIPTYLITAEYPAFLGVSAILAEQL 332 (638)
T ss_pred HHHHHhCCChHH----HHhcCCEEEEeCCChhHHHHHHHHHHHh
Confidence 777766333333 5566777777788888999998776555
No 14
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=99.94 E-value=1.1e-25 Score=218.56 Aligned_cols=282 Identities=13% Similarity=0.010 Sum_probs=173.3
Q ss_pred EEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCC-ccCcceEEEeec
Q 017527 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSN-RSAVRAVCLAVS 103 (370)
Q Consensus 25 lGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~-~~~v~~IgIgvp 103 (370)
|.+|+||||++++++|. ++.++.+....++ ...+.+.+.+++++++.+.. ...+.++|||+|
T Consensus 1 l~~DIGGT~i~~glvd~---------~g~~l~~~~~~~~--------~~~~~l~~~i~~~l~~~~~~~~~~~~~~~Igi~ 63 (316)
T TIGR00749 1 LVGDIGGTNARLALCEI---------APGEISQAKTYSG--------LDFPSLEAVVRVYLEEHKVELKDPIAKGCFAIA 63 (316)
T ss_pred CeEecCcceeeEEEEec---------CCCceeeeEEEec--------CCCCCHHHHHHHHHHhcccccCCCcCeEEEEEe
Confidence 57899999999999997 5665554332111 11355666777776654322 123678999999
Q ss_pred CCCChh--------hHHHHHHHHHhhCCCCc-eEEEeChHHHHHHhh--------c-C----CCCCeEEEEEccccee-e
Q 017527 104 GVNHPT--------DQQRILNWLRDIFPGNV-RLYVHNDALAALASG--------T-M----GKLHGCVLIAGTGTIA-Y 160 (370)
Q Consensus 104 G~~~~~--------~~~~l~~~L~~~f~~~~-pV~V~NDa~aa~~g~--------~-~----g~~~~v~l~~GTGi~g-~ 160 (370)
|+++.. |..++. .|++.|+ . ||.++||+||+++++ . + +.++++++++|||+++ .
T Consensus 64 Gpv~~~~v~~~nl~w~~~~~-~l~~~~g--~~~V~l~ND~naaa~ge~~l~~~~~~~~g~~~~~~~~~~v~lGtGtG~G~ 140 (316)
T TIGR00749 64 CPITGDWVAMTNHTWAFSIA-ELKQNLG--FSHLEIINDFTAVSYAIPGLKKEDLIQFGGAEPVEGKPIAILGAGTGLGV 140 (316)
T ss_pred CcccCCEEEecCCCCeeCHH-HHHHhcC--CCeEEEEecHHHHHcCCCCCCHHHeEEeCCCCCCCCCcEEEEecCCCcee
Confidence 986421 335775 8888898 6 699999999999986 3 2 3467888888666533 2
Q ss_pred eecc---CCceEe-eCCCCCCcCCCCchHHHH-HHHHHHH--HHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCC
Q 017527 161 GFTE---DGRDAR-AAGAGPILGDWGSGYGIA-AQALTAV--IRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPS 233 (370)
Q Consensus 161 gii~---dG~l~~-aGg~G~llgd~Gs~~~iG-~~~~~~~--~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~~~ 233 (370)
++++ ||+++. +||+||+.......-+.. .+.+... ..+.+...+.+.+.+.......... .. . .....
T Consensus 141 ~~vi~~~~g~l~~~agE~GH~~~~~~~~~~~~~~~~l~~~~~~g~~E~~~Sg~gl~~~~~~~~~~~~-~~--~--~~~~~ 215 (316)
T TIGR00749 141 AHLIHQVDGRWVVLPGEGGHVDFAPNSELEAIILEYLRAKIGHVSAERVLSGPGLVNIYEALVKADP-ER--Q--FNKLP 215 (316)
T ss_pred eEEEEcCCCCEEECCCCcccccCCCCCHHHHHHHHHHHHhcCCceeeeeecHHHHHHHHHHHHhhcC-cc--c--ccccc
Confidence 2355 899865 999999865332210000 0000000 0011222223333332222211000 00 0 00000
Q ss_pred hHHHhhhHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCc-cEEEEcCcc-cCcccccchHHHH
Q 017527 234 WARIAALVPVVVSCAEAGD-EVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSF-PLVMVGGVL-EANRRWDIGREVV 310 (370)
Q Consensus 234 ~~~~a~~~~~v~~~A~~GD-~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~-~VVlgGgv~-~~~~~~~l~~~v~ 310 (370)
.. ...+++|+++|.+|| +.|++++++++++||..+.+++++|| |+ -|+++||++ +..+.+ ..+.++
T Consensus 216 ~~--~~~~~~I~~aa~~Gdd~~A~~~~~~~~~~lg~~i~nl~~~ld--------peggv~v~GG~~~~~~~~~-~~~~f~ 284 (316)
T TIGR00749 216 QE--NLKPKDISERALAGSCTDCRRALSLFCVIYGRFAGNLALNLG--------TRGGVYIAGGIVPRFIEFF-KASGFR 284 (316)
T ss_pred cc--cCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCCcEEEECcHHHhHHhhh-CchHHH
Confidence 00 124688999999997 99999999999999999999999999 67 666666665 444444 222677
Q ss_pred HHHHhhCCCceeeCCCCCcccccccccccccccccc
Q 017527 311 KCILRDYPGAVPIRPKVCIWPHWHSCDQASANCCGA 346 (370)
Q Consensus 311 ~~l~~~~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 346 (370)
+.+.+.- ++.+-++...++.-.+.+.+++|||
T Consensus 285 ~~~~~~~----~~~~~~~~~pv~~i~~~~~~l~G~~ 316 (316)
T TIGR00749 285 AAFEDKG----RMKEYVHDIPVYVVLHDNPGLLGAG 316 (316)
T ss_pred HHHhccC----ChhHHHhhCCEEEEcCCCccccCCC
Confidence 7775522 2333556777777778888899885
No 15
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=99.82 E-value=1.4e-20 Score=167.45 Aligned_cols=146 Identities=19% Similarity=0.213 Sum_probs=120.4
Q ss_pred EEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEeecCC
Q 017527 26 GLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGV 105 (370)
Q Consensus 26 GVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgvpG~ 105 (370)
|||+|+|+++++++|. +|+++.+.+.+.+ .+++++++.+.+.+++++.+.+.. +|||++||+
T Consensus 1 gidig~~~i~~~l~d~---------~g~ii~~~~~~~~----~~~~~~~~~l~~~i~~~~~~~~~~-----gIgi~~pG~ 62 (179)
T PF00480_consen 1 GIDIGGTSIRIALVDL---------DGEIIYSESIPTP----TSPEELLDALAELIERLLADYGRS-----GIGISVPGI 62 (179)
T ss_dssp EEEEESSEEEEEEEET---------TSCEEEEEEEEHH----SSHHHHHHHHHHHHHHHHHHHTCE-----EEEEEESSE
T ss_pred CEEECCCEEEEEEECC---------CCCEEEEEEEECC----CCHHHHHHHHHHHHHHHHhhcccc-----cEEEecccc
Confidence 7999999999999999 8999999887765 268999999999999999887542 999999999
Q ss_pred CChhh------------HHHHHHHHHhhCCCCceEEEeChHHHHHHhhc-C----CCCCeEEEEEcccceeeeeccCCce
Q 017527 106 NHPTD------------QQRILNWLRDIFPGNVRLYVHNDALAALASGT-M----GKLHGCVLIAGTGTIAYGFTEDGRD 168 (370)
Q Consensus 106 ~~~~~------------~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~-~----g~~~~v~l~~GTGi~g~gii~dG~l 168 (370)
+++.. ..+|.+.|++.|+ +||+++||++++++++. + +.++++++.+|||+ |++++.||++
T Consensus 63 v~~~~g~i~~~~~~~~~~~~l~~~l~~~~~--~pv~i~Nd~~~~a~ae~~~~~~~~~~~~~~l~ig~Gi-G~~ii~~g~i 139 (179)
T PF00480_consen 63 VDSEKGRIISSPNPGWENIPLKEELEERFG--VPVIIENDANAAALAEYWFGAAKDCDNFLYLYIGTGI-GAGIIINGKI 139 (179)
T ss_dssp EETTTTEEEECSSGTGTTCEHHHHHHHHHT--SEEEEEEHHHHHHHHHHHHSTTTTTSSEEEEEESSSE-EEEEEETTEE
T ss_pred CcCCCCeEEecCCCCcccCCHHHHhhcccc--eEEEEecCCCcceeehhhcCccCCcceEEEEEeecCC-Ccceeccccc
Confidence 65432 2479999999998 89999999999999874 2 34799999999998 7789999999
Q ss_pred Ee-----eCCCCCCcCCC-CchHHHHHHHH
Q 017527 169 AR-----AAGAGPILGDW-GSGYGIAAQAL 192 (370)
Q Consensus 169 ~~-----aGg~G~llgd~-Gs~~~iG~~~~ 192 (370)
++ +|++||+..++ +-.|.||+.+|
T Consensus 140 ~~G~~~~aGeigh~~~~~~~~~c~cG~~GC 169 (179)
T PF00480_consen 140 YRGSNGFAGEIGHMPVDPNGEPCYCGNRGC 169 (179)
T ss_dssp ETTTTS-TTGGGGSBSSTTSSB-TTSSBSB
T ss_pred ccCCCccccceeeeeccCCCCcCCCCCcCc
Confidence 75 78899887654 34455555433
No 16
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=99.78 E-value=5e-17 Score=159.69 Aligned_cols=251 Identities=20% Similarity=0.197 Sum_probs=165.4
Q ss_pred EEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHH---HHHHHHHHHcCCCccCcceEEE
Q 017527 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIE---KVMADALLKSGSNRSAVRAVCL 100 (370)
Q Consensus 24 vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~---~~i~~~l~~~~~~~~~v~~IgI 100 (370)
+|.|..|+|+|++++++. +++++.+....+.... .+.+.+.+++. +.|.+++++.++..+++.+| .
T Consensus 2 il~in~Gsts~k~alf~~---------~~~~~~~~~~~~~~~~-~~~~~~~~q~~~r~~~i~~~l~~~~~~~~~i~av-~ 70 (351)
T TIGR02707 2 ILVINPGSTSTKLAVFED---------ERPLFEETLRHSVEEL-GRFKNVIDQFEFRKQVILQFLEEHGISISKLDAV-V 70 (351)
T ss_pred EEEEecCchhheEEEEeC---------CCceeeeeecCCHHHh-cccccHHHHHHHHHHHHHHHHHHcCCCcccccEE-E
Confidence 789999999999999998 7888877666552222 24557788888 88999999888777789999 7
Q ss_pred eecCCCChhh--------------------------HHHHHHHHHhhCCCCceEEEeCh---------HHHHHHhhc---
Q 017527 101 AVSGVNHPTD--------------------------QQRILNWLRDIFPGNVRLYVHND---------ALAALASGT--- 142 (370)
Q Consensus 101 gvpG~~~~~~--------------------------~~~l~~~L~~~f~~~~pV~V~ND---------a~aa~~g~~--- 142 (370)
+-||++++.. ...+...+.+.++ +|.+|.|+ +++.++.++
T Consensus 71 ~RgG~~~~v~Gg~~~v~~~~~~~l~~~~~~~~~hn~~~~~~~~~~~~~~--~p~~vfDt~fh~~~~~~a~~~alpe~~Rr 148 (351)
T TIGR02707 71 GRGGLLKPIPGGTYLVNEAMLEDLKSGKRGEHASNLGAIIANELADELN--IPAYIVDPVVVDEMEDVARISGLPEIERK 148 (351)
T ss_pred ECCCCCceecceeEEECHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHcC--CCEEEcCChhhhcChHHHHHhccchhhhh
Confidence 7888755321 1134445555665 89899999 665544221
Q ss_pred ------------------CCC----CCeEEEEEcccceeeeeccCCceEe-----eCCCCCCcCCCCch--HHHHHHHHH
Q 017527 143 ------------------MGK----LHGCVLIAGTGTIAYGFTEDGRDAR-----AAGAGPILGDWGSG--YGIAAQALT 193 (370)
Q Consensus 143 ------------------~g~----~~~v~l~~GTGi~g~gii~dG~l~~-----aGg~G~llgd~Gs~--~~iG~~~~~ 193 (370)
.|. .+++++++|||+ |.+++.||+++. +||.+++.-..|.- ....+
T Consensus 149 ygfHgls~~~v~~~~~~~~g~~~~~~~~I~~hLGtGi-g~~ai~~Gk~vdgs~G~agEg~~~~tr~G~id~~~~~~---- 223 (351)
T TIGR02707 149 SIFHALNQKAVARRIAKELGKRYEEMNLIVAHMGGGI-SVAAHRKGRVIDVNNALDGEGPFSPERSGTLPLGDLVD---- 223 (351)
T ss_pred hchhhhhHHHHHHHHHHHcCCCcccCCEEEEEeCCCc-eeeeEECCEEEEcCCCCCCcCCcccCccCCCCchhHHH----
Confidence 222 389999999998 567889999964 44433432111110 00001
Q ss_pred HHHHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Q 017527 194 AVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAV 273 (370)
Q Consensus 194 ~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~~~~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~v 273 (370)
.+.++..+ . ..+.+.+...+ .+... . . ....++|++++++||+.|+.++++++.+|++.|+++
T Consensus 224 ---~~~~~~~s--~--~el~~~l~~~s--Gl~~~-~------g-s~d~reI~~~a~~GD~~A~~a~d~~~~~la~~Ia~l 286 (351)
T TIGR02707 224 ---LCYSGKYT--K--EEMKKKIVGNG--GLVAY-L------G-TNDAREVEKRIEAGDEKAKLILDAMAYQIAKEIGKM 286 (351)
T ss_pred ---HHhcCCCC--H--HHHHHHHHhcc--Ccccc-c------C-CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 01111110 0 11111221111 11111 0 0 124688999999999999999999999999999999
Q ss_pred HHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCC
Q 017527 274 VQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYP 318 (370)
Q Consensus 274 v~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~~p 318 (370)
++.|++ +|+.||+|||+++. +.+ ++.+++.++...|
T Consensus 287 ~~~l~g------~pD~IV~gGGI~e~-~~l--~~~I~~~l~~~a~ 322 (351)
T TIGR02707 287 AVVLKG------KVDAIVLTGGLAYS-KYF--VSEIIKRVSFIAP 322 (351)
T ss_pred HHHhCC------CCCEEEEcchhhcC-HHH--HHHHHHHHHhhCC
Confidence 999931 27999999999974 555 7999999988433
No 17
>PTZ00288 glucokinase 1; Provisional
Probab=99.77 E-value=3e-18 Score=170.65 Aligned_cols=307 Identities=14% Similarity=0.029 Sum_probs=174.9
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEE
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCL 100 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgI 100 (370)
..|++++|||||++|+++++..++.+ +.........+.+. .+..+.++.+.++++++.+... .-+.+...+|
T Consensus 25 ~~~~~~~DiGgt~~R~~~~~~~~~~~----~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~i 96 (405)
T PTZ00288 25 GPIFVGCDVGGTNARVGFAREVQHDD----SGVHIIYVRFNVTK---TDIRELLEFFDEVLQKLKKNLS-FIQRVAAGAI 96 (405)
T ss_pred CCeEEEEEecCCceEEEEEeccCCCC----CceeEEEEeccccc---ccHHHHHHHHHHHHHHHHhcCc-cccCcCeEEE
Confidence 35899999999999999998621111 12222332222011 2466777777777777665432 1146777899
Q ss_pred eecCCCChhhH-------H---HHHHHHHhhCCCCceEEEeChHHHHHHhhc----------------------------
Q 017527 101 AVSGVNHPTDQ-------Q---RILNWLRDIFPGNVRLYVHNDALAALASGT---------------------------- 142 (370)
Q Consensus 101 gvpG~~~~~~~-------~---~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~---------------------------- 142 (370)
++||++....- . .+-+.--..|+. .++.+.||-.|.++|-.
T Consensus 97 AvAGPV~~~~~~~~~~~~~~~~~lTNlpw~i~~~-~~~~liNDfeA~aygi~~l~~~~~~~~~f~~~~~~~~~~~l~~~~ 175 (405)
T PTZ00288 97 SVPGPVTGGQLAGPFNNLKGIARLTDYPVELFPP-GRSALLNDLEAGAYGVLAVSNAGRLSEYFKVMWKGTQWDALSEGK 175 (405)
T ss_pred EEeCceeCCEeeccccccccccccCCCCchhcCC-CeEEEEEhHHHHhCcccccChhhcccccccccccccceeeecCCC
Confidence 99999642211 0 111110112763 47999999998766421
Q ss_pred -----CCCCCeEEEEEcccceeeeeccCCce-----EeeCCCCCCcCC--CCchHHHHHHHHHHHHHHHcCCCCCchhHH
Q 017527 143 -----MGKLHGCVLIAGTGTIAYGFTEDGRD-----ARAAGAGPILGD--WGSGYGIAAQALTAVIRAYDGRGPDTMLTS 210 (370)
Q Consensus 143 -----~g~~~~v~l~~GTGi~g~gii~dG~l-----~~aGg~G~llgd--~Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~ 210 (370)
.+..+.+++++|||++ .++++++++ ..+||.||+..+ .+..++++...+....+.....+..+. ..
T Consensus 176 ~~g~~~~~~~~~Vlg~GTGLG-~alli~~~l~~G~~~~agEgGHv~~~~~~~~~~~~g~~l~~~l~~~~~~~g~~~~-~~ 253 (405)
T PTZ00288 176 PAGSVIGRGRCMVLAPGTGLG-SSLIHYVGVSDQYIVIPLECGHLSISWPANEDSDYVQALAGYLASKALSKGIDST-VY 253 (405)
T ss_pred CCcccCCCCCEEEEEecccee-EEEEECCeecCCcccccccccceeeccCCCCccchhHHHHHHHHhhhcccccccc-Cc
Confidence 0224568999999995 467777774 458999998663 334445655544332221100000000 00
Q ss_pred HHHHHcCCCChhhHHHHh--ccCC-ChHHHhhhHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 017527 211 NILSTLELSSPDELIGWT--YVDP-SWARIAALVPVVVSCAE-AGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKH 286 (370)
Q Consensus 211 ~~~~~~~~~s~~~l~~~~--~~~~-~~~~~a~~~~~v~~~A~-~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~ 286 (370)
-..|.+. |...|...+ .... ....-.....+++++|. +||+.|.+++++++++||+.+.+++..++
T Consensus 254 vs~E~v~--SG~GL~~ly~~l~~~~~~~~~~~~~a~ia~~A~~~gD~~A~~al~~f~~~LG~~~~nlal~l~-------- 323 (405)
T PTZ00288 254 PIYEDIV--SGRGLEFNYAYEKRGNKPSAPLKEAAEVAKLAKYGSDVAAVKAMKRHYKYLMRLAAEISMQFL-------- 323 (405)
T ss_pred eeEeEEe--cHHHHHHHHHHHhccCCCccCcCCHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHC--------
Confidence 0011111 222222111 0000 00000113467888887 58999999999999999999999999999
Q ss_pred CccEEEEcCcccCcccccchH-HHHHHHHhhCCCce-eeCCCCCcccccc-cccccccccccceeE
Q 017527 287 SFPLVMVGGVLEANRRWDIGR-EVVKCILRDYPGAV-PIRPKVCIWPHWH-SCDQASANCCGAALC 349 (370)
Q Consensus 287 P~~VVlgGgv~~~~~~~~l~~-~v~~~l~~~~p~~~-~~~p~~~~~~~~~-~~~~~~~~~~~~~~~ 349 (370)
|+.|||+||+......+ +.+ .+.+.++..+-..+ -+.+-++.+.++. ..+.+.+++|||..+
T Consensus 324 P~~VvIgGGi~~~~~~~-l~~~~~~~f~~~f~~~~k~~r~~~l~~ipv~~qv~~~~~gL~Gaa~~a 388 (405)
T PTZ00288 324 PLTVVLMGDNIVYNSFF-FDNPENVKQLQARITEHKMERLKFLSRTTFLRQKKSVNLNLLGCLQFG 388 (405)
T ss_pred CCEEEEECccHHhhHHH-HhccchHHHHHHHHhcCccChHHHHhcCceEEEEeCCCccHHHHHHHH
Confidence 78899988776554444 222 22223333211111 0133555666655 566778899998876
No 18
>PRK03011 butyrate kinase; Provisional
Probab=99.70 E-value=1.6e-15 Score=149.26 Aligned_cols=265 Identities=17% Similarity=0.158 Sum_probs=162.1
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHH---HHHHHHHHHHHcCCCccCcceEE
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARET---IEKVMADALLKSGSNRSAVRAVC 99 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~---l~~~i~~~l~~~~~~~~~v~~Ig 99 (370)
.+|.|.-|.|+|++++++. .+.+.+....-+...-.....+.++ =.+.|.++++++++..+++.+|
T Consensus 3 ~il~inpgststk~a~~~~----------~~~~~~~~~~h~~~~~~~~~~~~~q~~~r~~~i~~~l~~~g~~~~~l~av- 71 (358)
T PRK03011 3 RILVINPGSTSTKIAVFED----------EKPIFEETLRHSAEELEKFKTIIDQYEFRKQAILDFLKEHGIDLSELDAV- 71 (358)
T ss_pred EEEEEcCCCchheEEEEcC----------CceeeeeccccCHHHHhcCCCccchHHHHHHHHHHHHHHcCCChhcceEE-
Confidence 5899999999999999987 3434333221100000000011122 2356667777888877889988
Q ss_pred EeecCCCChh--h------------------------HHHHHHHHHhhCCCCceEEEeCh--------------------
Q 017527 100 LAVSGVNHPT--D------------------------QQRILNWLRDIFPGNVRLYVHND-------------------- 133 (370)
Q Consensus 100 IgvpG~~~~~--~------------------------~~~l~~~L~~~f~~~~pV~V~ND-------------------- 133 (370)
++-+|+.+|- . ...+...+.+.++ +|++|.|+
T Consensus 72 ~~RgG~~~~v~gG~~~v~~~~~~~l~~~~~~~~~~nl~~~~a~~~~~~~~--~p~~v~D~~~~~~~~~~a~~~~lp~i~R 149 (358)
T PRK03011 72 VGRGGLLKPIPGGTYRVNEAMLEDLKNGKYGEHASNLGAIIAYEIAKELG--IPAFIVDPVVVDEMEPVARISGLPEIER 149 (358)
T ss_pred EEcCCCCcccCCCCEEcCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC--CCEEEECCcccccCCHHHHHcCCCCcce
Confidence 7887775531 0 0124455555666 89999999
Q ss_pred ------HHHHHHhh----cCC----CCCeEEEEEcccceeeeeccCCceEe-----eCC-------CCCCcCCCCchHHH
Q 017527 134 ------ALAALASG----TMG----KLHGCVLIAGTGTIAYGFTEDGRDAR-----AAG-------AGPILGDWGSGYGI 187 (370)
Q Consensus 134 ------a~aa~~g~----~~g----~~~~v~l~~GTGi~g~gii~dG~l~~-----aGg-------~G~llgd~Gs~~~i 187 (370)
.|..+.+. ..| ..++|++++|||+ |.+++.||++++ +|| +||+.. ..+
T Consensus 150 ~~gfHgln~~~va~~~a~~~g~~~~~~n~I~~hLGtGi-g~gai~~Gk~idgs~g~agEG~~~~~R~G~l~~-----~~~ 223 (358)
T PRK03011 150 KSIFHALNQKAVARRVAKELGKKYEELNLIVAHLGGGI-SVGAHRKGRVIDVNNALDGEGPFSPERAGGLPV-----GDL 223 (358)
T ss_pred eecchHHhHHHHHHHHHHHhCCCcccCcEEEEEeCCCc-eeeEEECCEEEecCCccCCCCCcccCcccCcCc-----HHH
Confidence 45433332 123 3589999999998 667889999976 333 333211 000
Q ss_pred HHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 017527 188 AAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELA 267 (370)
Q Consensus 188 G~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~~~~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg 267 (370)
+. .+..+..+... +.+.+...+ .+... . . ....++|++++++||+.|..++++++.+|+
T Consensus 224 ~~-------~~~~g~~s~~~----l~~~l~~~~--Gl~~~-~------g-s~d~reV~~~a~~GD~~A~~ald~~~~~la 282 (358)
T PRK03011 224 VE-------LCFSGKYTKEE----LKKKLVGKG--GLVAY-L------G-TNDAREVEKRIEEGDEKAKLVYEAMAYQIA 282 (358)
T ss_pred HH-------HHhcCCCCHHH----HHHHHHhcc--Ccccc-c------C-CCCHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 11 01111111111 111111001 11100 0 0 124688999999999999999999999999
Q ss_pred HHHHHHHHHh--ccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceeeCCCCCccccccccccc-ccccc
Q 017527 268 LSVKAVVQRL--SLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVCIWPHWHSCDQA-SANCC 344 (370)
Q Consensus 268 ~~l~~vv~~l--~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~~p~~~~~~p~~~~~~~~~~~~~~-~~~~~ 344 (370)
+.|.++++.| | |+.||++||++. .+.+ ++.+++.++...| ..+..++++. +...|
T Consensus 283 k~I~~l~~~L~gd--------pD~IVlgGGI~~-~~~l--~~~I~~~l~~~~p-----------v~i~p~~~e~~A~a~G 340 (358)
T PRK03011 283 KEIGAMAAVLKGK--------VDAIVLTGGLAY-SKRL--VERIKERVSFIAP-----------VIVYPGEDEMEALAEG 340 (358)
T ss_pred HHHHHHHHHhCCC--------CCEEEEeCcccc-CHHH--HHHHHHHHHhhCC-----------eEEEeCCCHHHHHHHH
Confidence 9999999999 5 899999999998 5554 8899999986422 3344555553 44566
Q ss_pred cceeE
Q 017527 345 GAALC 349 (370)
Q Consensus 345 ~~~~~ 349 (370)
|+.+-
T Consensus 341 A~rvl 345 (358)
T PRK03011 341 ALRVL 345 (358)
T ss_pred HHHHH
Confidence 66553
No 19
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=99.55 E-value=6.5e-14 Score=135.87 Aligned_cols=281 Identities=16% Similarity=0.037 Sum_probs=160.2
Q ss_pred EEEEcCccceEEEEEeCCCCCCCCCCCCC--eEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEee
Q 017527 25 LGLDGGTTSTVCICMPVISMSDSLPDPLP--VLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (370)
Q Consensus 25 lGVDiGgT~i~~~l~d~~~~~~~~~~~g~--il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgv 102 (370)
|.-||||||+|+++++.. .+. ++...+.++.+.. .+.+++++++++......++..++|++
T Consensus 1 Lv~DIGGTn~Rlal~~~~--------~~~~~~~~~~~~~~~~~~---------s~~~~l~~~l~~~~~~~~~p~~~~iav 63 (316)
T PF02685_consen 1 LVADIGGTNTRLALAEPD--------GGPLQLIDIRRYPSADFP---------SFEDALADYLAELDAGGPEPDSACIAV 63 (316)
T ss_dssp EEEEEETTEEEEEEEECT--------CGG-EEEEEEEEEGCCCC---------HHHHHHHHHHHHTCHHHTCEEEEEEEE
T ss_pred CeEEeCcccEEEEEEEcC--------CCCccccccEEEecCCcC---------CHHHHHHHHHHhcccCCCccceEEEEE
Confidence 467999999999999871 233 4666666665543 245555666664332334677899999
Q ss_pred cCCCChhh-------HHHHHHHHHhhCCCCceEEEeChHHHHHHhh-------c--------CCCCCeEEEEEcccceee
Q 017527 103 SGVNHPTD-------QQRILNWLRDIFPGNVRLYVHNDALAALASG-------T--------MGKLHGCVLIAGTGTIAY 160 (370)
Q Consensus 103 pG~~~~~~-------~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~-------~--------~g~~~~v~l~~GTGi~g~ 160 (370)
+|+++... |.-=.+.|++.|+. .+|.+.||-.+.+++- . ......+++..|||.+.+
T Consensus 64 AGPV~~~~~~lTN~~W~i~~~~l~~~lg~-~~v~liNDfeA~a~gl~~L~~~~l~~l~~g~~~~~~~~~Vig~GTGLG~a 142 (316)
T PF02685_consen 64 AGPVRDGKVRLTNLPWTIDADELAQRLGI-PRVRLINDFEAQAYGLPALDPEDLVTLQPGEPDPGGPRAVIGPGTGLGVA 142 (316)
T ss_dssp SS-EETTCEE-SSSCCEEEHHHCHCCCT--TCEEEEEHHHHHHHHHHHHHHCCECCHCCEESSTTS-EEEEEESSSEEEE
T ss_pred ecCccCCEEEecCCCccccHHHHHHHhCC-ceEEEEcccchheeccCCCCHHHeeeccCCCCCCCCcEEEEEcCCCcEEE
Confidence 99964321 11125667778873 3799999999876641 0 112456789999999776
Q ss_pred eeccCCce--EeeCCCCCCcCCCCchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHHH---HhccCCChH
Q 017527 161 GFTEDGRD--ARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIG---WTYVDPSWA 235 (370)
Q Consensus 161 gii~dG~l--~~aGg~G~llgd~Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~---~~~~~~~~~ 235 (370)
.++.++.- .-.+|.||+--..-...+.- +...++..-++. . .|.+ -|...|.. .........
T Consensus 143 ~l~~~~~~~~v~~sEgGH~~fap~~~~e~~---l~~~l~~~~~~v---s-----~E~v--lSG~GL~~ly~~l~~~~~~~ 209 (316)
T PF02685_consen 143 LLVPDGDGYYVLPSEGGHVDFAPRTDEEAE---LLRFLRRRYGRV---S-----VERV--LSGRGLENLYRFLAGERGAE 209 (316)
T ss_dssp EEEEETTEEEEEEE-GGGSB---SSHHHHH---HHHHHHHHCTS----B-----HHHC--SSHHHHHHHHHHHHCCTT--
T ss_pred EEEecCCceEeCCCccccccCCCCCHHHHH---HHHHHHHhcCCc---e-----eEee--cchhhHHHHHHHHHhccCCC
Confidence 66655533 45789999743333222211 111122221211 0 1111 12222222 111111000
Q ss_pred HHhhhHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchH--HHHHH
Q 017527 236 RIAALVPVVVSCAE-AGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGR--EVVKC 312 (370)
Q Consensus 236 ~~a~~~~~v~~~A~-~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~--~v~~~ 312 (370)
.-...+++|.++|. .+|+.|++.++.+...||+...+++-.+.+ -.-|+|+||++.....+ ++ .|++.
T Consensus 210 ~~~~~~~~I~~~A~~~~d~~a~~al~~f~~~lg~~agdlaL~~~a-------~gGvyiaGGI~~~~~~~--l~~~~F~~~ 280 (316)
T PF02685_consen 210 PPLLSAAEISAAALEGGDPLAREALDLFARILGRVAGDLALTFLA-------RGGVYIAGGIAPRLLPL--LDESAFREA 280 (316)
T ss_dssp S----HHHHHHHHHCT--HHHHHHHHHHHHHHHHHHHHHHHHHT--------TCEEEEE-TTGGGGHHH--HHCSSHHHH
T ss_pred CCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC-------CeeEEEecchhhHHHHH--cChhHHHHH
Confidence 00134678888886 568999999999999999999999999984 23599999999876555 33 46666
Q ss_pred HHhhCCCceeeCCCCCcccccccccccccccccceeE
Q 017527 313 ILRDYPGAVPIRPKVCIWPHWHSCDQASANCCGAALC 349 (370)
Q Consensus 313 l~~~~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 349 (370)
+...-+ +.+-++...+++-.+.+.+++|||+.+
T Consensus 281 F~~kg~----~~~~l~~iPv~li~~~~~gL~Gaa~~a 313 (316)
T PF02685_consen 281 FEDKGR----MSDLLEDIPVYLITDPDAGLLGAAAYA 313 (316)
T ss_dssp HH--GG----GHHHHTT--EEEE--S-HHHHHHHHHH
T ss_pred HhccCC----cHHHHhcCcEEEEeCCCHHHHHHHHHH
Confidence 644222 233555666666667778899998764
No 20
>COG0837 Glk Glucokinase [Carbohydrate transport and metabolism]
Probab=99.34 E-value=3.2e-10 Score=106.93 Aligned_cols=288 Identities=17% Similarity=0.074 Sum_probs=164.7
Q ss_pred CCcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEE
Q 017527 20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVC 99 (370)
Q Consensus 20 ~~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~Ig 99 (370)
|....|.-||||||.|++++... .+++....+..|.+. .+|+++|++++.+. ....+...+
T Consensus 4 ~~~p~LvgDIGGTnaRfaLv~~a--------~~~~~~~~~~~~~dy---------psle~av~~yl~~~--~~~~~~~a~ 64 (320)
T COG0837 4 MGYPRLVGDIGGTNARFALVEIA--------PAEPLQAETYACADY---------PSLEEAVQDYLSEH--TAVAPRSAC 64 (320)
T ss_pred CCCceEEEecCCcceEEEEeccC--------CCCccccceecccCc---------CCHHHHHHHHHHHh--hccCccceE
Confidence 33445555999999999998652 233333334444433 23556666677665 224567789
Q ss_pred EeecCCCChhh-------HHHHHHHHHhhCCCCceEEEeChHHHHHHhhc---------CC------CCCeEEEEEcccc
Q 017527 100 LAVSGVNHPTD-------QQRILNWLRDIFPGNVRLYVHNDALAALASGT---------MG------KLHGCVLIAGTGT 157 (370)
Q Consensus 100 IgvpG~~~~~~-------~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~---------~g------~~~~v~l~~GTGi 157 (370)
++++|+++.++ |.-=.+++++.++. ..|.+.||-.+-+++-. .| ...-+++--|||.
T Consensus 65 ~AiAgPv~gd~v~lTN~~W~~s~~~~r~~Lgl-~~v~liNDF~A~A~Ai~~l~~~dl~qigg~~~~~~a~~avlGPGTGL 143 (320)
T COG0837 65 FAIAGPIDGDEVRLTNHDWVFSIARMRAELGL-DHLSLINDFAAQALAIPRLGAEDLEQIGGGKPEPNAPRAVLGPGTGL 143 (320)
T ss_pred EEEecCccCCEEeeecCcccccHHHHHHhcCC-CcEEEechHHHHHhhccccCHHHHHHhcCCCCCCCCceEEEcCCCCc
Confidence 99999976432 22224566677774 57999999988655410 11 1456788899999
Q ss_pred eeeeeccCCceE--eeCCCCCCcCCCCchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChH
Q 017527 158 IAYGFTEDGRDA--RAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWA 235 (370)
Q Consensus 158 ~g~gii~dG~l~--~aGg~G~llgd~Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~~~~~ 235 (370)
+.++++..+.-. -.||=||+--...+.-++ .++..++...|+.+. ++.++-.....+.+...+.....
T Consensus 144 GVa~Lv~~~~~w~~lp~EGGHvdf~P~~~~E~---~i~~~l~~~~GrVS~-------Er~LSG~GL~~iY~al~~~~~~~ 213 (320)
T COG0837 144 GVAGLVPNGGGWIPLPGEGGHVDFAPRSEREF---QILEYLRARFGRVSA-------ERVLSGPGLVNLYRALCAADGRL 213 (320)
T ss_pred ceEEEEecCCeeEeccCCCccccCCCCCHHHH---HHHHHHHHhcCccch-------hhhcccccHHHHHHHHHHhhCCC
Confidence 888887765533 378888853333333332 122333333444321 01110000001111100000000
Q ss_pred HHhhhHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHH
Q 017527 236 RIAALVPVVVSCAEA-GDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCIL 314 (370)
Q Consensus 236 ~~a~~~~~v~~~A~~-GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~ 314 (370)
....+..+|.++|.+ +|+.|.+.++-++.+||....+++-+|.. ---|.|.||+....-.++....|++.+.
T Consensus 214 ~~~~~p~~It~~al~g~d~~a~~tl~lF~~~lG~~AGdlAL~lga-------rGGVyiaGGI~pril~~l~~s~Fr~~Fe 286 (320)
T COG0837 214 PEDLTPAAITERALAGGDALARETLSLFCAILGRVAGDLALTLGA-------RGGVYIAGGIVPRILEALKASGFRARFE 286 (320)
T ss_pred cccCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhHHhHHHHhhc-------cCcEEEcCCchHhHHHHHhcchHHHHhh
Confidence 001123578888888 79999999999999999999999999985 4589999999875433312334555555
Q ss_pred hhCCCceeeCCCCCccccccccccccccccccee
Q 017527 315 RDYPGAVPIRPKVCIWPHWHSCDQASANCCGAAL 348 (370)
Q Consensus 315 ~~~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 348 (370)
..-|-.- -+...-.++-.+...+++|||+-
T Consensus 287 dKGr~sa----~l~~IPV~vi~~~~~gL~Gaa~~ 316 (320)
T COG0837 287 DKGRMSA----YLADIPVYVILHPQPGLLGAAAA 316 (320)
T ss_pred hcCchHH----HHhhCCEEEEecCCchHHHHHHH
Confidence 4333222 22233333334444558887653
No 21
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=99.21 E-value=6.8e-11 Score=94.95 Aligned_cols=92 Identities=12% Similarity=0.174 Sum_probs=70.3
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEee
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgv 102 (370)
.+||+|+|+|+++++++|. +|+++.....++.. +.+..++.|.+++++ . ++.+||||+
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~---------~g~~~~~~~~~~~~----~~~~~~~~l~~~i~~----~-----~~~~i~Ig~ 59 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDE---------TGKLADPLEVIPRT----NKEADAARLKKLIKK----Y-----QPDLIVIGL 59 (99)
T ss_pred cEEEEccCCCeEEEEEECC---------CCCEecCEEEEEec----CcchHHHHHHHHHHH----h-----CCCEEEEeC
Confidence 4799999999999999998 79998776654421 234455555555544 2 467999999
Q ss_pred cCCCCh----hhHHHHHHHHHhhCCCCceEEEeChHHHHH
Q 017527 103 SGVNHP----TDQQRILNWLRDIFPGNVRLYVHNDALAAL 138 (370)
Q Consensus 103 pG~~~~----~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~ 138 (370)
||.++. .+..+|+++|++.++ +||+++||+++..
T Consensus 60 pg~v~g~~~~~~~~~l~~~l~~~~~--~pv~~~nDa~st~ 97 (99)
T smart00732 60 PLNMNGTASRETEEAFAELLKERFN--LPVVLVDERLATV 97 (99)
T ss_pred CcCCCCCcCHHHHHHHHHHHHHhhC--CcEEEEeCCcccc
Confidence 998643 234789999999998 8999999998753
No 22
>PLN02914 hexokinase
Probab=99.16 E-value=2.1e-08 Score=102.30 Aligned_cols=297 Identities=16% Similarity=0.108 Sum_probs=162.3
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCC---CeEE--EEEec-CCCccccCHHHHHHHHHHHHHHHHHHcCC----
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPL---PVLA--RAAAG-CSNHNSVGEDAARETIEKVMADALLKSGS---- 90 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g---~il~--~~~~~-~~n~~~~~~~~~~~~l~~~i~~~l~~~~~---- 90 (370)
.+.++++|+|||+.|+.++.+ .| .+.. +...+ +......+.+++++-|.+.|.+++++...
T Consensus 94 ~G~fLAlDlGGTNfRV~~V~L---------~g~~~~~~~~~~~~~~ip~~l~~gt~~eLFdfIA~~i~~fl~~~~~~~~~ 164 (490)
T PLN02914 94 KGLFYALDLGGTNFRVLRVQL---------GGKDERVIATEFEQVSIPQELMFGTSEELFDFIASGLANFVAKEGGKFHL 164 (490)
T ss_pred eeEEEEEecCCceEEEEEEEe---------cCCCCceeeeeEEEecCChhhccCCHHHHHHHHHHHHHHHHHhccccccC
Confidence 468999999999999999998 33 1222 11222 22222235789999999999999987642
Q ss_pred CccCcceEEEeecCCCCh---------hh----------H----HHHHHHHHhh-CCCCceEEEeChHHHHHHhhcC-CC
Q 017527 91 NRSAVRAVCLAVSGVNHP---------TD----------Q----QRILNWLRDI-FPGNVRLYVHNDALAALASGTM-GK 145 (370)
Q Consensus 91 ~~~~v~~IgIgvpG~~~~---------~~----------~----~~l~~~L~~~-f~~~~pV~V~NDa~aa~~g~~~-g~ 145 (370)
+..+...+|+..+=+... .| + ..|.+.|+++ ++ -..+.|.||+.+.++++.+ ..
T Consensus 165 ~~~~~l~LGfTFSFP~~Q~si~~g~Li~WTKGF~~~gv~G~DVv~lL~~Al~r~~l~-v~v~AivNDTVGTL~a~aY~~~ 243 (490)
T PLN02914 165 PEGRKREIGFTFSFPVKQTSIDSGILMKWTKGFAVSGTAGKDVVACLNEAMERQGLD-MRVSALVNDTVGTLAGARYWDD 243 (490)
T ss_pred CccccccceeeEeeeeecCCCCceEEEEeccccccCCccCchHHHHHHHHHHHcCCC-ceEEEEEEcCHHHHHhhhcCCC
Confidence 111233455555444321 01 1 2345555443 22 1356789999999887654 33
Q ss_pred CCeEEEEEcccceeeeecc-------------CCceEeeCCCCCCcCCCCchHHHHHHHHHHHHHHHcCCC--CC-----
Q 017527 146 LHGCVLIAGTGTIAYGFTE-------------DGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRG--PD----- 205 (370)
Q Consensus 146 ~~~v~l~~GTGi~g~gii~-------------dG~l~~aGg~G~llgd~Gs~~~iG~~~~~~~~~~~dg~~--~~----- 205 (370)
...+.+|+|||++++-+-. +++..-.=|||.+ ++... .+..-...|... |.
T Consensus 244 ~~~iGlIlGTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F-~~~lp--------~T~~D~~lD~~S~nPG~Q~fE 314 (490)
T PLN02914 244 DVMVAVILGTGTNACYVERTDAIPKLQGQKSSSGRTIINTEWGAF-SDGLP--------LTEFDREMDAASINPGEQIFE 314 (490)
T ss_pred CceEEEEEECCeeeEEEeecccccccccCCCCCceEEEecccccc-CCCCC--------CChHHHHHhhCCCCCCcchhh
Confidence 4578899999999875432 1222334567754 22110 011111112110 00
Q ss_pred --------chhHHHHHHHc-------------------CCCChhhHHHHhccCCChHHHhhhHHHHHHHH-hc----CC-
Q 017527 206 --------TMLTSNILSTL-------------------ELSSPDELIGWTYVDPSWARIAALVPVVVSCA-EA----GD- 252 (370)
Q Consensus 206 --------~~l~~~~~~~~-------------------~~~s~~~l~~~~~~~~~~~~~a~~~~~v~~~A-~~----GD- 252 (370)
..+.+.++..+ .+.+ ..+.....+.. .++. .+..+++.. .- .|
T Consensus 315 KmiSG~YLGEivRlvLl~l~~~~~lF~~~~~~~L~~~~~l~T--~~ls~i~~D~s-~~l~-~~~~~l~~~~~~~~~~~d~ 390 (490)
T PLN02914 315 KTISGMYLGEIVRRVLLKMAETSDLFGHFVPEKLSTPFALRT--PHLCAMQQDNS-DDLQ-AVGSILYDVLGVEASLSAR 390 (490)
T ss_pred hHHhhhhHHHHHHHHHHHHHHhcccccCCCcHhhcCCCcccc--HHHHHHhcCCC-hhHH-HHHHHHHHhcCCCCCHHHH
Confidence 01112111111 1111 11111111110 0110 111222110 00 11
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHhccCCC--CCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceeeCCC
Q 017527 253 ----EVANKILQDSVEELALSVKAVVQRLSLSGE--DGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPK 326 (370)
Q Consensus 253 ----~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~--~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~~p~~~~~~p~ 326 (370)
..|..+.+|+++..|-+|+.+++..+..+. ....+..|-+-||+.+.++.| .+.+++.+.+.++ .. .
T Consensus 391 ~~vr~i~~~V~~RAArL~Aa~iaail~k~~~~~~~~~~~~~~~VavDGSv~~~~p~f--~~~l~~~l~ellg-~~----~ 463 (490)
T PLN02914 391 RRVVEVCDTIVKRGGRLAGAGIVGILEKMEEDSKGMIFGKRTVVAMDGGLYEKYPQY--RRYMQDAVTELLG-LE----L 463 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCceEEEEEeCchhhcCccH--HHHHHHHHHHHhC-cc----c
Confidence 467778899999999999999998763110 011246899999999999998 9999999988552 11 2
Q ss_pred CCcccccccccccccccccceeE
Q 017527 327 VCIWPHWHSCDQASANCCGAALC 349 (370)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~ 349 (370)
-+...+..++++- -.|||-++
T Consensus 464 ~~~i~i~~a~DGS--GvGAAl~A 484 (490)
T PLN02914 464 SKNIAIEHTKDGS--GIGAALLA 484 (490)
T ss_pred CCcEEEEEccCch--HHHHHHHH
Confidence 2245666666665 67776544
No 23
>PTZ00107 hexokinase; Provisional
Probab=99.10 E-value=4.9e-08 Score=99.32 Aligned_cols=294 Identities=14% Similarity=0.096 Sum_probs=157.3
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCC--e-EEEEEecCC-Cccc---------cCHHHHHHHHHHHHHHHHHH
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLP--V-LARAAAGCS-NHNS---------VGEDAARETIEKVMADALLK 87 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~--i-l~~~~~~~~-n~~~---------~~~~~~~~~l~~~i~~~l~~ 87 (370)
.+.++++|+|||+.|+.++.+ .|. + +.+....-+ .... .+.+++++.|.+.|.+++++
T Consensus 73 ~G~fLAlDlGGTN~RV~~V~L---------~g~~~~~~~~~~~~ip~~~~~~~~~~~~k~~t~~~lFd~IA~~i~~fl~~ 143 (464)
T PTZ00107 73 KGVYYAIDFGGTNFRAVRVSL---------RGGGKMERTQSKFSLPKSALLGEKGLLDKKATATDLFDHIAKSIKKMMEE 143 (464)
T ss_pred cceEEEEecCCceEEEEEEEe---------CCCCceeeEEEEEeCCHHHhccccccccccCCHHHHHHHHHHHHHHHHHh
Confidence 568999999999999999998 332 1 111111111 1111 15779999999999999987
Q ss_pred cCC--CccCcceEEEeecCCCC----------------------------hhhHHHHHHHHHhh-CCCCceEEEeChHHH
Q 017527 88 SGS--NRSAVRAVCLAVSGVNH----------------------------PTDQQRILNWLRDI-FPGNVRLYVHNDALA 136 (370)
Q Consensus 88 ~~~--~~~~v~~IgIgvpG~~~----------------------------~~~~~~l~~~L~~~-f~~~~pV~V~NDa~a 136 (370)
... +..+..-+|+..+=+.. .+-...|.+.|+++ ++ -..+.|.||+.+
T Consensus 144 ~~~~~~~~~~l~lGfTFSFP~~Q~si~~g~Li~WtKGF~~~~~~~~~v~G~DV~~lL~~Al~r~~l~-v~v~AivNDTVg 222 (464)
T PTZ00107 144 NGDPEDLNKPVPVGFTFSFPCTQLSVNNAILIDWTKGFETGRATNDPVEGKDVGELLNDAFKRNNVP-ANVVAVLNDTVG 222 (464)
T ss_pred ccccccccccccceeEEeeeeecccCCceEEEEeccceeeccCCCCCccCchHHHHHHHHHHHcCCC-ceEEEEEEcCHH
Confidence 651 11122233333333321 11112344444443 22 136779999999
Q ss_pred HHHhhcC-C----CCCeEEEEEcccceeeeeccC------CceEeeCCCCCCcCCCCchHHHHHHHHHHHHHHHcCCC--
Q 017527 137 ALASGTM-G----KLHGCVLIAGTGTIAYGFTED------GRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRG-- 203 (370)
Q Consensus 137 a~~g~~~-g----~~~~v~l~~GTGi~g~gii~d------G~l~~aGg~G~llgd~Gs~~~iG~~~~~~~~~~~dg~~-- 203 (370)
.++++.+ . ....+.+|+|||++++-+... ....-.=|||.+ ++. +-. +..-...|...
T Consensus 223 TL~a~ay~~~~~~~~~~iGlIlGTG~NacY~E~~~~~~~~~~~iINtEwG~F-~~~-----lp~---T~~D~~lD~~S~n 293 (464)
T PTZ00107 223 TLISCAYQKPKNTPPCQVGVIIGTGSNACYFEPEVSAYGYAGTPINMECGNF-DSK-----LPI---TPYDLEMDWYTPN 293 (464)
T ss_pred HHHHHHhcCcCCCCCceEEEEEeccccceeeehhhccCCCCcEEEEeecccc-CCC-----CCC---ChHHHHHhhcCCC
Confidence 9887753 2 345678999999998755421 112223567754 321 101 11111122111
Q ss_pred C----------C---chhHHHHH-HHcCCCChhhH----------HHHhccCCChHHHhhhHHHHHHH----------Hh
Q 017527 204 P----------D---TMLTSNIL-STLELSSPDEL----------IGWTYVDPSWARIAALVPVVVSC----------AE 249 (370)
Q Consensus 204 ~----------~---~~l~~~~~-~~~~~~s~~~l----------~~~~~~~~~~~~~a~~~~~v~~~----------A~ 249 (370)
+ . ..+.+.++ +.+....+..+ +.....+.. ..+. .+..++.. +.
T Consensus 294 pg~Q~fEKmiSG~YLGEi~Rlvl~~l~~~~~~~~l~~~~~~~t~~ls~i~~d~s-~~l~-~~~~~l~~~~~~~~~~~d~~ 371 (464)
T PTZ00107 294 RGRQQFEKMISGAYLGEISRRLIVHLLQLKAPPKMWQSGSFESEDASMILNDQS-PDLQ-FSRQVIKEAWDVDLTDEDLY 371 (464)
T ss_pred CCcCchhhHHhhhhHHHHHHHHHHHHHhcCCchhhcCCcccccHHHHhhhcCCC-chHH-HHHHHHHHhcCCCCCHHHHH
Confidence 0 0 11222222 22211111111 111111100 0100 11111111 00
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceeeCCCCCc
Q 017527 250 AGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVCI 329 (370)
Q Consensus 250 ~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~~p~~~~~~p~~~~ 329 (370)
.=-..|..+.+|+++..|-+|+.+++..+. ...+-.|-+-||+.+.++.| .+.+++.+++... |.-..
T Consensus 372 ~lr~i~~~V~~RAA~L~Aa~iaail~k~~~----~~~~~~VgvDGSv~~~~p~f--~~~~~~~l~~ll~------~~~~~ 439 (464)
T PTZ00107 372 TIRKICELVRGRAAQLAAAFIAAPAKKTRT----VQGKATVAIDGSVYVKNPWF--RRLLQEYINSILG------PDAGN 439 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CCCceEEEEeCcceecCccH--HHHHHHHHHHHhC------CCCCc
Confidence 001457779999999999999999998872 12357899999999999998 9999999988542 12223
Q ss_pred ccccccccccccccccceeE
Q 017527 330 WPHWHSCDQASANCCGAALC 349 (370)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~ 349 (370)
..+..++++- -.|||-++
T Consensus 440 v~l~~a~DGS--g~GAAl~A 457 (464)
T PTZ00107 440 VVFYLADDGS--GKGAAIIA 457 (464)
T ss_pred EEEEEccCch--HHHHHHHH
Confidence 4455555554 67775443
No 24
>PRK00976 hypothetical protein; Provisional
Probab=99.10 E-value=1.3e-08 Score=98.19 Aligned_cols=84 Identities=17% Similarity=0.144 Sum_probs=67.3
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCC
Q 017527 240 LVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPG 319 (370)
Q Consensus 240 ~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~~p~ 319 (370)
..++++++|.+||+.|+++|++++++|+..++++++.+| |+.||||||++...++ ++.+.+++.+.. +
T Consensus 225 ~~~eIfeaA~~GD~~A~~aid~~~~~LA~~IAnLi~llD--------Pe~IVLGGGVS~~~e~-~L~~~I~e~l~~--~- 292 (326)
T PRK00976 225 TKEELLEAYEKGDEKAKLAIDTLALFVAMEIASLLLLNP--------EDNVVLAGSVGEMDEP-DVSERIKELLDK--K- 292 (326)
T ss_pred CHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcC--------CCEEEEcCccccCchh-HHHHHHHHHhcc--c-
Confidence 467899999999999999999999999999999999999 7999999999987644 235555555433 1
Q ss_pred ceeeCCCCCccccccccc-ccccccccceeE
Q 017527 320 AVPIRPKVCIWPHWHSCD-QASANCCGAALC 349 (370)
Q Consensus 320 ~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~ 349 (370)
.+.+ ++++++|||.++
T Consensus 293 --------------~a~LG~dAGaiGAA~iA 309 (326)
T PRK00976 293 --------------VLVLGKESAAIGLALIA 309 (326)
T ss_pred --------------ccccCCchHHHHHHHHH
Confidence 1222 347799999987
No 25
>PLN02405 hexokinase
Probab=99.07 E-value=7.9e-08 Score=98.35 Aligned_cols=301 Identities=18% Similarity=0.118 Sum_probs=161.9
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCC---CeEE---EEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCC---
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPL---PVLA---RAAAGCSNHNSVGEDAARETIEKVMADALLKSGSN--- 91 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g---~il~---~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~--- 91 (370)
.+.++++|+|||+.|+.++.+ .| .++. +....+......+.+++++-|.+.|.+++++.+..
T Consensus 94 ~G~flAlDlGGTNfRV~~V~L---------~g~~~~~~~~~~~~~~ip~~~~~gt~~~LFdfIA~~i~~fl~~~~~~~~~ 164 (497)
T PLN02405 94 KGLFYALDLGGTNFRVLRVLL---------GGKDGRVVKQEFEEVSIPPHLMTGSSDALFDFIAAALAKFVATEGEDFHL 164 (497)
T ss_pred ceeEEEEecCCceEEEEEEEE---------cCCCCceeEEEEEEeecChhhccCCHHHHHHHHHHHHHHHHHhccccccc
Confidence 568999999999999999998 33 2222 11222333333467899999999999999876522
Q ss_pred -ccCcceEEEeecCCCChh---------h----------HHHHHHHHHhhC---CCC-ceEEEeChHHHHHHhhcC-CCC
Q 017527 92 -RSAVRAVCLAVSGVNHPT---------D----------QQRILNWLRDIF---PGN-VRLYVHNDALAALASGTM-GKL 146 (370)
Q Consensus 92 -~~~v~~IgIgvpG~~~~~---------~----------~~~l~~~L~~~f---~~~-~pV~V~NDa~aa~~g~~~-g~~ 146 (370)
..+..-+|+..+=+.+.. | +.++.+.|++.+ +.+ ..+.|.||+.+.++++.+ ...
T Consensus 165 ~~~~~l~LGfTFSFPv~Qtsi~~g~Li~WTKGF~~~~~vG~DVv~lL~~Al~r~~l~v~v~AlvNDTVGTL~a~aY~~~~ 244 (497)
T PLN02405 165 PPGRQRELGFTFSFPVKQTSISSGTLIKWTKGFSIDDAVGQDVVGELTKAMERVGLDMRVSALVNDTIGTLAGGRYYNPD 244 (497)
T ss_pred CcccccccceeEeeeeccCCCCceEEEEeccccccCCccCchHHHHHHHHHHHcCCCceEEEEEecCHHHHHHhhcCCCC
Confidence 112344555555443211 1 123444444432 211 357799999999887754 334
Q ss_pred CeEEEEEcccceeeeecc-------------CCceEeeCCCCCCcCCCCchHHHHHHHHHHHHHHHcCCC--CC------
Q 017527 147 HGCVLIAGTGTIAYGFTE-------------DGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRG--PD------ 205 (370)
Q Consensus 147 ~~v~l~~GTGi~g~gii~-------------dG~l~~aGg~G~llgd~Gs~~~iG~~~~~~~~~~~dg~~--~~------ 205 (370)
..+.+|+|||++++.+-. +++..-.=|||.+ +.. +...+..-...|... |.
T Consensus 245 ~~iG~IlGTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F-~~~-------~lp~T~~D~~lD~~S~nPG~Q~fEK 316 (497)
T PLN02405 245 VVAAVILGTGTNAAYVERAQAIPKWHGLLPKSGEMVINMEWGNF-RSS-------HLPLTEYDHALDVESLNPGEQIFEK 316 (497)
T ss_pred ceEEEEEeCCeeeEEEeecccCccccccCCCCCeEEEEeccccC-CCC-------CCCCchHHHHHhhcCCCCCcchhhH
Confidence 568899999999875431 1122233567643 110 000111111122110 00
Q ss_pred -------chhHHHHHHHc-------CCCChhh----------HHHHhccCCChHHHhhhHHHHHHHH-h-c-C---C---
Q 017527 206 -------TMLTSNILSTL-------ELSSPDE----------LIGWTYVDPSWARIAALVPVVVSCA-E-A-G---D--- 252 (370)
Q Consensus 206 -------~~l~~~~~~~~-------~~~s~~~----------l~~~~~~~~~~~~~a~~~~~v~~~A-~-~-G---D--- 252 (370)
..+.+.++..+ +-..+.. .+.....+.. .++. .+..++... . . - |
T Consensus 317 miSG~YLGEivRlvLl~l~~~~~lF~g~~~~~L~~~~~l~T~~ls~i~~D~s-~~l~-~~~~~l~~~l~~~~~~~~~~~~ 394 (497)
T PLN02405 317 IISGMYLGEILRRVLLKMAEEAAFFGDTVPPKLKIPFILRTPDMSAMHHDTS-PDLK-VVGSKLKDILEIPNTSLKMRKV 394 (497)
T ss_pred HHhhccHHHHHHHHHHHHHHhccccCCCCcHhhcCCCCcccHHHHHHhcCCC-chHH-HHHHHHHHHcCCCCCCHHHHHH
Confidence 01111111111 0000000 1111111110 0110 011111110 0 0 0 1
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC--CCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceeeCCCCC
Q 017527 253 --EVANKILQDSVEELALSVKAVVQRLSLSGEDG--KHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVC 328 (370)
Q Consensus 253 --~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~--~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~~p~~~~~~p~~~ 328 (370)
..|..|.+|+++..|-+|+.+++..+...... ..+..|-+-||+.+.++.| .+.+++.+.+.++. . .-.
T Consensus 395 vr~i~~~V~~RAArL~Aa~iaail~k~~~~~~~~~~~~~~~VavDGsvye~yp~f--~~~~~~~l~ell~~-~----~~~ 467 (497)
T PLN02405 395 VVELCNIVATRGARLSAAGIYGILKKLGRDTVKDGEKQKSVIAMDGGLFEHYTEF--SKCMESTLKELLGE-E----VSE 467 (497)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCcceEEEEeCchhhcCcCH--HHHHHHHHHHHhCc-c----cCc
Confidence 34567899999999999999999987311000 1235789999999999998 99999999886532 1 123
Q ss_pred cccccccccccccccccceeE
Q 017527 329 IWPHWHSCDQASANCCGAALC 349 (370)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~ 349 (370)
...+..++++- -.|||-++
T Consensus 468 ~v~l~~a~DGS--GvGAAl~A 486 (497)
T PLN02405 468 SIEVEHSNDGS--GIGAALLA 486 (497)
T ss_pred eEEEEEecCch--HHHHHHHH
Confidence 45666666665 66775544
No 26
>PLN02596 hexokinase-like
Probab=99.00 E-value=2.1e-07 Score=94.99 Aligned_cols=302 Identities=14% Similarity=0.048 Sum_probs=157.5
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCC---eEEE--EEec-CCCccccCHHHHHHHHHHHHHHHHHHcCCCcc-
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLP---VLAR--AAAG-CSNHNSVGEDAARETIEKVMADALLKSGSNRS- 93 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~---il~~--~~~~-~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~- 93 (370)
.+.+|++|+|||+.|+.++.+ .|+ +... ...+ +........+++++-|.+.|.+++++.+....
T Consensus 95 ~G~yLAlDlGGTNfRV~~V~L---------~g~~~~~~~~~~~~~~Ip~~l~~~t~~eLFd~IA~~i~~fl~~~~~~~~~ 165 (490)
T PLN02596 95 KGLYYGLNLRGSNFLLLRARL---------GGKNEPISDLYREEISIPSNVLNGTSQELFDYIALELAKFVAEHPGDEAD 165 (490)
T ss_pred ceEEEEEeeCCceEEEEEEEE---------cCCCCceEEEEEEEecCChHhhcCCHHHHHHHHHHHHHHHHHhhcccccc
Confidence 468899999999999999998 332 1211 1112 22222235788999999999999987643211
Q ss_pred ---CcceEEEeecCCCCh---------hh---------HHHHHHHHHhhC---C-CCceEEEeChHHHHHHhhcCC-CCC
Q 017527 94 ---AVRAVCLAVSGVNHP---------TD---------QQRILNWLRDIF---P-GNVRLYVHNDALAALASGTMG-KLH 147 (370)
Q Consensus 94 ---~v~~IgIgvpG~~~~---------~~---------~~~l~~~L~~~f---~-~~~pV~V~NDa~aa~~g~~~g-~~~ 147 (370)
+..-+|+..+=+... .| +.++.+.|++.+ + .-..+.|.||+.+.++++.+- .+.
T Consensus 166 ~~~~~l~lGfTFSFP~~Q~si~~G~Li~WKgF~~~~~vG~Dvv~lL~~Al~r~~l~v~v~AivNDTVgTL~a~aY~~~~~ 245 (490)
T PLN02596 166 TPERVKKLGFTVSYPVDQAAASSGSAIKWKSFSADDTVGKALVNDINRALEKHGLKIRVFALVDDTIGNLAGGRYYNKDT 245 (490)
T ss_pred CcccccccceEEeeeeeecCCCCEEEEEeccccCCCccCcHHHHHHHHHHHhcCCCceEEEEEEcCHHHHHhhhcCCCCe
Confidence 112233333322110 01 234444444433 2 113677999999998887543 345
Q ss_pred eEEEEEcccceeeeeccC-------------CceEeeCCCCCCcCCC-----------------C--------ch---HH
Q 017527 148 GCVLIAGTGTIAYGFTED-------------GRDARAAGAGPILGDW-----------------G--------SG---YG 186 (370)
Q Consensus 148 ~v~l~~GTGi~g~gii~d-------------G~l~~aGg~G~llgd~-----------------G--------s~---~~ 186 (370)
.+.+|+|||++++.+-.- ++..-.=|||.+-... | || +|
T Consensus 246 ~iG~I~GTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F~~~~lp~T~~D~~lD~~S~nPG~Q~fEKMiSG~YLGE 325 (490)
T PLN02596 246 VAAVTLGMGTNAAYVEPAQAIPKWQSPSPESQEIVISTEWGNFNSCHLPITEFDASLDAESSNPGSRIFEKLTSGMYLGE 325 (490)
T ss_pred EEEEEEecccceEEEEEccccccccCCCCCCCeEEEEeccccCCCCCCCCChHHHHHhccCCCCCcchHHHHHhhhhHHH
Confidence 678999999998754321 1222335676431100 0 11 12
Q ss_pred HHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHHhhhHHHHHHH-H----------hcCCHHH
Q 017527 187 IAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSC-A----------EAGDEVA 255 (370)
Q Consensus 187 iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~~~~~~~a~~~~~v~~~-A----------~~GD~~A 255 (370)
|.+..+...... +..-...+-..+.+.|.+.+ ..+.....+... +.. .+..++.. . ..=-..|
T Consensus 326 lvRlvl~~l~~~--~~lF~~~~~~~L~~~~~l~T--~~lS~i~~d~s~-~~~-~~~~~l~~~l~~~~~~~~d~~~lr~i~ 399 (490)
T PLN02596 326 IVRRVLLKMAEE--TALFGDTLPPKLTTPYLLRS--PDMAAMHQDTSE-DHE-VVNEKLKEIFGITDSTPMAREVVAEVC 399 (490)
T ss_pred HHHHHHHHHHHh--ccccCCCCcHhhcCCCcccc--HHHHHHhcCCCc-hHH-HHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 222222111110 00000000001111111111 111111111100 000 01111110 0 0001357
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceeeCCCCCccccccc
Q 017527 256 NKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVCIWPHWHS 335 (370)
Q Consensus 256 ~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~~p~~~~~~p~~~~~~~~~~ 335 (370)
..|.+|+++..|-+++.+++..+. ....+..|-+-|++.+.++.| .+.+++.+.+.++. . .-..+.+..+
T Consensus 400 ~~V~~RAArL~Aa~iaail~k~g~---~~~~~~~VavDGSvye~~p~f--~~~l~~al~ellg~-~----~~~~i~~~~s 469 (490)
T PLN02596 400 DIVAERGARLAGAGIVGIIKKLGR---IENKKSVVTVEGGLYEHYRVF--RNYLHSSVWEMLGS-E----LSDNVVIEHS 469 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC---CCCCceEEEEeCcceeeCcCH--HHHHHHHHHHHhCc-c----cCCcEEEEEc
Confidence 788999999999999999999861 222346899999999999998 99999999886531 1 1224555556
Q ss_pred ccccccccccceeE
Q 017527 336 CDQASANCCGAALC 349 (370)
Q Consensus 336 ~~~~~~~~~~~~~~ 349 (370)
+++- =.|||-++
T Consensus 470 ~DGS--G~GAAl~A 481 (490)
T PLN02596 470 HGGS--GAGALFLA 481 (490)
T ss_pred cCch--hHHHHHHH
Confidence 6655 45655433
No 27
>PLN02362 hexokinase
Probab=98.97 E-value=3e-07 Score=94.43 Aligned_cols=297 Identities=13% Similarity=0.074 Sum_probs=159.2
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCC---CeE----EEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCc-
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPL---PVL----ARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNR- 92 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g---~il----~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~- 92 (370)
.+.++++|+|||+.|+.++.+ .| .++ .+... +........+++++-|.+.|.+++++.....
T Consensus 94 ~G~fLAlDlGGTNfRV~~V~L---------~g~~~~~~~~~~~~~~I-p~~l~~~~~~eLFd~IA~~i~~fl~~~~~~~~ 163 (509)
T PLN02362 94 IGTYYALDLGGTNFRVLRVQL---------GGQRSSILSQDVERHPI-PQHLMNSTSEVLFDFIASSLKQFVEKEENGSE 163 (509)
T ss_pred ceeEEEEecCCceEEEEEEEe---------cCCCcceeeceeEEEec-ChhhccCCHHHHHHHHHHHHHHHHHhcCcccc
Confidence 568999999999999999998 33 222 12222 2233334578999999999999998865321
Q ss_pred ---cCcceEEEeecCCCChh---------h----------HHHHHHHHHhhC---CC-CceEEEeChHHHHHHhhcCCC-
Q 017527 93 ---SAVRAVCLAVSGVNHPT---------D----------QQRILNWLRDIF---PG-NVRLYVHNDALAALASGTMGK- 145 (370)
Q Consensus 93 ---~~v~~IgIgvpG~~~~~---------~----------~~~l~~~L~~~f---~~-~~pV~V~NDa~aa~~g~~~g~- 145 (370)
.+..-+|+..+=+.... | +.++.+.|++.+ +. -..+.|.||+.+.++++.+-.
T Consensus 164 ~~~~~~l~LGfTFSFPv~Q~si~~g~Li~WtKGF~~~~v~G~DVv~lL~~Al~r~~l~v~v~AlvNDTVgTL~a~aY~~~ 243 (509)
T PLN02362 164 FSQVRRRELGFTFSFPVKQTSISSGILIKWTKGFAISDMVGKDVAECLQGALNRRGLDMRVAALVNDTVGTLALGHYHDP 243 (509)
T ss_pred ccccccccceeEEeeeeccCCCCceEEEEeccccccCcccCchHHHHHHHHHHHcCCCcEEEEEEEcCHHHHHhhhcCCC
Confidence 12233555544443210 1 124444444433 21 135678899999988775433
Q ss_pred CCeEEEEEcccceeeeeccC--------------CceEeeCCCCCCcCCCCchHHHHHHHHHHHHHHHcCCC--CC----
Q 017527 146 LHGCVLIAGTGTIAYGFTED--------------GRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRG--PD---- 205 (370)
Q Consensus 146 ~~~v~l~~GTGi~g~gii~d--------------G~l~~aGg~G~llgd~Gs~~~iG~~~~~~~~~~~dg~~--~~---- 205 (370)
...+.+|+|||++++-+ .+ ++..-.=|||-+ +.. +...+..-...|... |.
T Consensus 244 ~~~iG~IlGTGtNacY~-E~~~~i~k~~~~~~~~~~miINtEwG~F-~~~-------~lp~T~~D~~lD~~S~nPG~Q~f 314 (509)
T PLN02362 244 DTVAAVIIGTGTNACYL-ERTDAIIKCQGLLTTSGSMVVNMEWGNF-WSS-------HLPRTSYDIDLDAESPNPNDQGF 314 (509)
T ss_pred CceEEEEEECCccceEe-eehhhcccccccCCCCCcEEEEeeccCC-CCC-------CCCCchHHHHHhcCCCCcCcchH
Confidence 34578999999998744 32 112223456643 110 000111111122111 00
Q ss_pred ---------chhHHHHHH------------------HcCCCChhhHHHHhccCCChHHHhhhHHHHHHHH------hcCC
Q 017527 206 ---------TMLTSNILS------------------TLELSSPDELIGWTYVDPSWARIAALVPVVVSCA------EAGD 252 (370)
Q Consensus 206 ---------~~l~~~~~~------------------~~~~~s~~~l~~~~~~~~~~~~~a~~~~~v~~~A------~~GD 252 (370)
..+.+.++- .|.+.+ ..+.....+.. ..+. .+..+++.. ...|
T Consensus 315 EKmiSG~YLGEivRlvL~~l~~~~~lF~~~~~~L~~~~~l~T--~~ls~i~~d~s-~~l~-~~~~~l~~~~~~~~~~~~~ 390 (509)
T PLN02362 315 EKMISGMYLGDIVRRVILRMSQESDIFGPVSSRLSTPFVLRT--PSVAAMHEDDS-PELQ-EVARILKETLGISEVPLKV 390 (509)
T ss_pred HHHHhhccHHHHHHHHHHHHHhccccccCCcHhhcCCCcccc--HHHHHHhcCCC-hhHH-HHHHHHHHhcCCCCCCHHH
Confidence 011111111 111111 01111111110 0111 111122110 0011
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHhccCCCC--C----------CCCccEEEEcCcccCcccccchHHHHHHHHh
Q 017527 253 -----EVANKILQDSVEELALSVKAVVQRLSLSGED--G----------KHSFPLVMVGGVLEANRRWDIGREVVKCILR 315 (370)
Q Consensus 253 -----~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~--~----------~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~ 315 (370)
..|..|.+|+++..|-+|+.+++..+..... . ..+..|-+-||+.+.++.| .+.+++.+++
T Consensus 391 ~~~v~~i~~~V~~RaArL~Aa~iaail~k~~~~~~~~~~~~~~~~~~~~~~~~~VavDGsvye~yp~f--~~~~~~~l~e 468 (509)
T PLN02362 391 RKLVVKICDVVTRRAARLAAAGIVGILKKIGRDGSGGITSGRSRSDIQIMRRTVVAVEGGLYTNYTMF--REYLHEALNE 468 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccCCCceEEEEEeCchhhcCcCH--HHHHHHHHHH
Confidence 4577789999999999999999987621110 0 1135888999999999998 9999999988
Q ss_pred hCCCceeeCCCCCcccccccccccccccccceeE
Q 017527 316 DYPGAVPIRPKVCIWPHWHSCDQASANCCGAALC 349 (370)
Q Consensus 316 ~~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 349 (370)
.++. . .-..+.+..++++- -.|||-++
T Consensus 469 ll~~-~----~~~~v~i~~a~DGS--gvGAAl~A 495 (509)
T PLN02362 469 ILGE-D----VAQHVILKATEDGS--GIGSALLA 495 (509)
T ss_pred HhCc-c----cCceEEEEEccCch--HHHHHHHH
Confidence 6522 1 11345555566655 66776554
No 28
>PRK13318 pantothenate kinase; Reviewed
Probab=98.81 E-value=4.9e-08 Score=92.39 Aligned_cols=126 Identities=18% Similarity=0.110 Sum_probs=82.1
Q ss_pred EEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEee-
Q 017527 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV- 102 (370)
Q Consensus 24 vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgv- 102 (370)
+|+||+|+|++++++++. ++++.+.+.++.... +++++. +.+.++++..+.+..++.+|++|.
T Consensus 2 iL~IDIGnT~iK~al~d~----------g~i~~~~~~~t~~~~--~~~~~~----~~l~~l~~~~~~~~~~i~~I~issV 65 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEG----------GKLVAHWRISTDSRR--TADEYG----VWLKQLLGLSGLDPEDITGIIISSV 65 (258)
T ss_pred EEEEEECCCcEEEEEEEC----------CEEEEEEEEeCCCCC--CHHHHH----HHHHHHHHHcCCCcccCceEEEEEe
Confidence 799999999999999986 788887776664332 455544 445556666665556788999888
Q ss_pred -cCCCChhhHHHHHH----------HHHhhCCCCceEEEeCh--------HHHHHHhhcCCCCCeEEEEEcccceeeeec
Q 017527 103 -SGVNHPTDQQRILN----------WLRDIFPGNVRLYVHND--------ALAALASGTMGKLHGCVLIAGTGTIAYGFT 163 (370)
Q Consensus 103 -pG~~~~~~~~~l~~----------~L~~~f~~~~pV~V~ND--------a~aa~~g~~~g~~~~v~l~~GTGi~g~gii 163 (370)
|+..+.- ...+.. ..+..++ +|+.++|+ ++|.++.+.+. .+.+++.+||++ ...++
T Consensus 66 vp~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g--l~~~y~np~~lG~DR~a~~~aa~~~~~-~~~ivid~GTA~-t~d~v 140 (258)
T PRK13318 66 VPSVMHSL-ERMCRKYFNIEPLVVVGPGVKTG--INIKVDNPKEVGADRIVNAVAAYELYG-GPLIVVDFGTAT-TFDVV 140 (258)
T ss_pred cCchHHHH-HHHHHHHhCCCCeEEECCCcCCC--CceecCChhhcchHHHHHHHHHHHHcC-CCEEEEEcCCce-EEEEE
Confidence 5443211 111111 1222333 78999999 66665555443 389999999998 44565
Q ss_pred -cCCceEe
Q 017527 164 -EDGRDAR 170 (370)
Q Consensus 164 -~dG~l~~ 170 (370)
.+|+...
T Consensus 141 ~~~g~~~G 148 (258)
T PRK13318 141 SAKGEYLG 148 (258)
T ss_pred cCCCcEEE
Confidence 6776543
No 29
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=98.75 E-value=1.6e-06 Score=81.54 Aligned_cols=219 Identities=20% Similarity=0.235 Sum_probs=121.2
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEee
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgv 102 (370)
|+||||+|+|++|++++|. |+++.+....+.. ..+. +.+.+.+++++.+.++.++.+|++
T Consensus 1 ~~lGIDiGtts~K~vl~d~----------g~il~~~~~~~~~----~~~~----~~~~l~~~~~~~~~~~~~i~~i~~-- 60 (248)
T TIGR00241 1 ISLGIDSGSTTTKMVLMED----------GKVIGYKWLDTTP----VIEE----TARAILEALKEAGIGLEPIDKIVA-- 60 (248)
T ss_pred CEEEEEcChhheEEEEEcC----------CEEEEEEEecCCC----CHHH----HHHHHHHHHHHcCCChhheeEEEE--
Confidence 5799999999999999985 8999888764432 2333 455666667777776677877655
Q ss_pred cCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhh--cCCCCCeEEEEEcccceeeeeccCCceEeeCCCCCCcCC
Q 017527 103 SGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASG--TMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGD 180 (370)
Q Consensus 103 pG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~--~~g~~~~v~l~~GTGi~g~gii~dG~l~~aGg~G~llgd 180 (370)
.|.....- . |. .+. .+...|-+.|. .++..+. ++-+|..-.-+-.+.+|++... ...+
T Consensus 61 Tg~~~~~v--~--------~~--~~~--~~ei~~~~~g~~~~~~~~~~-vidiGgqd~k~i~~~~g~~~~~-----~~n~ 120 (248)
T TIGR00241 61 TGYGRHKV--G--------FA--DKI--VTEISCHGKGANYLAPEARG-VIDIGGQDSKVIKIDDGKVDDF-----TMND 120 (248)
T ss_pred ECCCcccc--c--------cc--CCc--eEEhhHHHHHHHHHCCCCCE-EEEecCCeeEEEEECCCcEeee-----eecC
Confidence 45432110 1 22 222 33444433333 2444344 4445433323334446765410 0011
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHHh----hhH-HHHHHHHhcCCHHH
Q 017527 181 WGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIA----ALV-PVVVSCAEAGDEVA 255 (370)
Q Consensus 181 ~Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~~~~~~~a----~~~-~~v~~~A~~GD~~A 255 (370)
..++ | ...+.+.+.+.+++ +.+++-...........++ .++ .+++....+|.+.
T Consensus 121 ~ca~----------------G---tg~f~e~~a~~l~~-~~~e~~~~~~~~~~~~~~~~~c~vf~~s~vi~~l~~g~~~- 179 (248)
T TIGR00241 121 KCAA----------------G---TGRFLEVTARRLGV-SVEELGSLAEKADRKAKISSMCTVFAESELISLLAAGVKK- 179 (248)
T ss_pred cccc----------------c---ccHHHHHHHHHcCC-CHHHHHHHHhcCCCCCCcCCEeEEEechhHHHHHHCCCCH-
Confidence 1110 0 01234445555553 3444332222111111111 122 4566777777644
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCc-cEEEEcCcccCcccccchHHHHHHH
Q 017527 256 NKILQDSVEELALSVKAVVQRLSLSGEDGKHSF-PLVMVGGVLEANRRWDIGREVVKCI 313 (370)
Q Consensus 256 ~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~-~VVlgGgv~~~~~~~~l~~~v~~~l 313 (370)
.+++..+.+.++..+..+++.++ ++ .|++.||++. ++.| .+.+.+.+
T Consensus 180 ~di~~~~~~~va~~i~~~~~~~~--------~~~~Vvl~GGva~-n~~l--~~~l~~~l 227 (248)
T TIGR00241 180 EDILAGVYESIAERVAEMLQRLK--------IEAPIVFTGGVSK-NKGL--VKALEKKL 227 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcC--------CCCCEEEECcccc-CHHH--HHHHHHHh
Confidence 47888888899999998888877 45 8999999986 4454 66666655
No 30
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=98.66 E-value=3.9e-06 Score=84.85 Aligned_cols=301 Identities=14% Similarity=0.017 Sum_probs=161.6
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCC---eEEE--EEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCc
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLP---VLAR--AAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAV 95 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~---il~~--~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v 95 (370)
.+.++++|+|||+.|+.++.. .|. +... ....|.+...-+.++..+.|.+.+..++.+.+.....=
T Consensus 85 ~G~~lalDLGGTn~Rv~~v~L---------~g~~~~~~~~~~~~~ip~~~m~gt~~~Lfd~Ia~~l~~F~~~~~~~~~~~ 155 (474)
T KOG1369|consen 85 KGKFLALDLGGTNFRVLLVKL---------GGGRTSVRMYNKIYAIPEEIMQGTGEELFDFIARCLADFLDKMGLKGASK 155 (474)
T ss_pred CCCEEEEecCCCceEEEEEEe---------cCCcccceeeeeeEecCHHHHcCchHHHHHHHHHHHHHHHHHhccccccc
Confidence 568999999999999999987 332 2222 22223333323578899999999999998876531110
Q ss_pred ceEEEeecCCCChh---------h----------HH----HHHHHHHhhCCC-CceEEEeChHHHHHHhhc-CCCCCeEE
Q 017527 96 RAVCLAVSGVNHPT---------D----------QQ----RILNWLRDIFPG-NVRLYVHNDALAALASGT-MGKLHGCV 150 (370)
Q Consensus 96 ~~IgIgvpG~~~~~---------~----------~~----~l~~~L~~~f~~-~~pV~V~NDa~aa~~g~~-~g~~~~v~ 150 (370)
.-+|+..+=+.+.. | +. -|.+.|+++.-. -.-+.|.||+...++++. .+.+..+.
T Consensus 156 l~lgFTFSfP~~Q~si~~g~L~~wTkGf~~~~~~g~Dvv~~L~eal~rr~~~~i~V~AlvNDTvGtl~~~~y~~~~~~ig 235 (474)
T KOG1369|consen 156 LPLGFTFSFPCRQTSIDKGTLIRWTKGFKATDCEGEDVVRLLREAIKRRGLFDMDVVAVVNDTVGTLMTCAYEDPNCEIG 235 (474)
T ss_pred cccceEEeeeeeecccccceEEEecccccchhhhcchHHHHHHHHHHHcCCcceEEEEEEecCHHhHhhceecCCCcEEE
Confidence 34455544443211 1 11 355666655421 123779999999888764 55678889
Q ss_pred EEEcccceeeeeccCCce------------EeeCCCCCCcCCCCchHHHHHH---HHHH-----HHHHHcCCCCCch---
Q 017527 151 LIAGTGTIAYGFTEDGRD------------ARAAGAGPILGDWGSGYGIAAQ---ALTA-----VIRAYDGRGPDTM--- 207 (370)
Q Consensus 151 l~~GTGi~g~gii~dG~l------------~~aGg~G~llgd~Gs~~~iG~~---~~~~-----~~~~~dg~~~~~~--- 207 (370)
|+.|||++++-+...+++ +-.=|||-+ +|+ +...+.-+ .+.+ -..-+|...+...
T Consensus 236 vI~GTGtNacY~e~~~~i~k~~~~~~~~~miIN~EWG~F-~~~-~~~l~~T~yD~~vD~eS~npG~~~~EKmisGmYLGE 313 (474)
T KOG1369|consen 236 VIFGTGTNACYMEDMRNIEKVEGDAGRGPMCINTEWGAF-GDN-SLDLPRTEYDVVVDEESLNPGKQLFEKMISGMYLGE 313 (474)
T ss_pred EEECCCccceeeeeccchhhcccccCCCceEEEccccCC-Ccc-ccccchhhHHHHHhhhcCCcchhHHHHHhccccHHH
Confidence 999999998765544432 223567654 222 11111000 0000 0000000001111
Q ss_pred hHHHHHHHcCCCC-----------hh----hHHHHhccCCChHHHhhhHHHHHHHHh-----cC-----CHHHHHHHHHH
Q 017527 208 LTSNILSTLELSS-----------PD----ELIGWTYVDPSWARIAALVPVVVSCAE-----AG-----DEVANKILQDS 262 (370)
Q Consensus 208 l~~~~~~~~~~~s-----------~~----~l~~~~~~~~~~~~~a~~~~~v~~~A~-----~G-----D~~A~~il~~a 262 (370)
+.+.++..+...+ +. .++.....+. ...+..... +.+... .. -+.|.-+-+|+
T Consensus 314 ivR~vLl~m~~~~~lf~~~~~~l~p~~~~T~~~S~i~~D~-~~~l~~~~~-~~~~l~~~~~~~~~r~~V~~vc~~v~~Ra 391 (474)
T KOG1369|consen 314 IVRLVLLDLLEEGLLFGGQSTKLTPFIFETKYVSAIEEDD-TGALQETEK-ILDLLGLETTTTEDRKLVREVCDVVSRRA 391 (474)
T ss_pred HHHHHHHHHhHhhhhhcccccccCcceeccchHHhHhcCC-chHHHHHHH-HHHhhCCCcCcHHHHHHHHHHHHHHHHHH
Confidence 1122221111000 00 0011111111 001111111 111110 01 14677888999
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceeeCCCCCcccccccccccccc
Q 017527 263 VEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVCIWPHWHSCDQASAN 342 (370)
Q Consensus 263 ~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~~p~~~~~~p~~~~~~~~~~~~~~~~~ 342 (370)
++.-|.+|+.+++..+. ....--.|-+.|++.+.+|.| .+.+++.+++... + -.-+.+..++++. -
T Consensus 392 A~L~aagIaail~k~~~---~~~~~~~VgvdGsly~~yP~f--~~~m~~~l~eLlg-~------~~~v~i~~s~dgS--g 457 (474)
T KOG1369|consen 392 ARLAAAGIAAILNKTGE---LSRKRVTVGVDGSLYKNHPFF--REYLKEALRELLG-P------SIHVKLVLSEDGS--G 457 (474)
T ss_pred HHHHHhHHHHHHHHhcc---cccCceEEEeccchhHcCchH--HHHHHHHHHHHhC-C------CceEEEEECCCCc--c
Confidence 99999999999999872 122235688999999999998 9999999997654 1 1134555556555 5
Q ss_pred ccccee
Q 017527 343 CCGAAL 348 (370)
Q Consensus 343 ~~~~~~ 348 (370)
.|||-+
T Consensus 458 ~GAAL~ 463 (474)
T KOG1369|consen 458 RGAALI 463 (474)
T ss_pred ccHHHH
Confidence 666543
No 31
>PRK13321 pantothenate kinase; Reviewed
Probab=98.52 E-value=3.3e-06 Score=79.89 Aligned_cols=126 Identities=17% Similarity=0.067 Sum_probs=79.3
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEee
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgv 102 (370)
++|+||+|+|++++++++. ++++.+.+.++... .+++++.+.+.+.+ ++.+.+.+++.+|+++.
T Consensus 1 MiL~IDIGnT~ik~gl~~~----------~~i~~~~~~~T~~~--~~~~~~~~~l~~l~----~~~~~~~~~i~~i~vss 64 (256)
T PRK13321 1 MLLLIDVGNTNIKLGVFDG----------DRLLRSFRLPTDKS--RTSDELGILLLSLF----RHAGLDPEDIRAVVISS 64 (256)
T ss_pred CEEEEEECCCeEEEEEEEC----------CEEEEEEEEecCCC--CCHHHHHHHHHHHH----HHcCCChhhCCeEEEEe
Confidence 3799999999999999997 47777666666543 25666555555544 44454455788888876
Q ss_pred cCCCChhhHHHHHHHHHh-------------------hCCCCceEEEeCh--HHHHHHhhcCCCCCeEEEEEcccceeee
Q 017527 103 SGVNHPTDQQRILNWLRD-------------------IFPGNVRLYVHND--ALAALASGTMGKLHGCVLIAGTGTIAYG 161 (370)
Q Consensus 103 pG~~~~~~~~~l~~~L~~-------------------~f~~~~pV~V~ND--a~aa~~g~~~g~~~~v~l~~GTGi~g~g 161 (370)
++ |.....+.+.+++ .+. .|..+.+| ++|.++.+.+..++.+++.+||=+----
T Consensus 65 --Vv-p~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~y~--~P~~lG~DR~a~~~aa~~~~~~~~~lvid~GTA~T~d~ 139 (256)
T PRK13321 65 --VV-PPLNYSLESACKRYFGIKPLFVGPGIKTGLKIRYD--NPREVGADRIVNAVAARRLYPDRNLIVVDFGTATTFDC 139 (256)
T ss_pred --ec-ccHHHHHHHHHHHHhCCCeEEECCCCCCCcccccC--ChhhccHHHHHHHHHHHHHcCCCCEEEEECCCceEEEE
Confidence 44 3333334333333 233 47778899 5555444444435899999999984432
Q ss_pred eccCCceE
Q 017527 162 FTEDGRDA 169 (370)
Q Consensus 162 ii~dG~l~ 169 (370)
+..+|+..
T Consensus 140 v~~~g~~~ 147 (256)
T PRK13321 140 VSGKGEYL 147 (256)
T ss_pred EcCCCcEE
Confidence 33444443
No 32
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=98.33 E-value=0.00024 Score=67.69 Aligned_cols=135 Identities=21% Similarity=0.157 Sum_probs=88.4
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCc---cccCHHHHHHHHHHHHHHHHHHcCCCccCcce
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNH---NSVGEDAARETIEKVMADALLKSGSNRSAVRA 97 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~---~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~ 97 (370)
..+++++|+|.|++++++.+. +++++.....+.... .-.+.+.+.+.|..+++.+-+..+. ++..
T Consensus 23 ~~~~~~iDiGSssi~~vv~~~---------~~~~~~~~~~~~~~vr~G~i~di~~a~~~i~~~~~~ae~~~g~---~i~~ 90 (267)
T PRK15080 23 SPLKVGVDLGTANIVLAVLDE---------DGQPVAGALEWADVVRDGIVVDFIGAVTIVRRLKATLEEKLGR---ELTH 90 (267)
T ss_pred CCEEEEEEccCceEEEEEEcC---------CCCEEEEEeccccccCCCEEeeHHHHHHHHHHHHHHHHHHhCC---CcCe
Confidence 569999999999999999876 565655544432111 1123555556555555554434443 3777
Q ss_pred EEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhcCCCCCeEEEEEcccceeeeeccCCceEee
Q 017527 98 VCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARA 171 (370)
Q Consensus 98 IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~~g~~~~v~l~~GTGi~g~gii~dG~l~~a 171 (370)
+.+++|.--+......+.+.+++. +. .+..+.++..+++.+ ++..+.+++-+|.|+--..++.+|++...
T Consensus 91 v~~~vp~~~~~~~~~~~~~~~~~a-Gl-~~~~ii~e~~A~a~~--~~~~~~~vvDIGggtt~i~v~~~g~~~~~ 160 (267)
T PRK15080 91 AATAIPPGTSEGDPRAIINVVESA-GL-EVTHVLDEPTAAAAV--LGIDNGAVVDIGGGTTGISILKDGKVVYS 160 (267)
T ss_pred EEEEeCCCCCchhHHHHHHHHHHc-CC-ceEEEechHHHHHHH--hCCCCcEEEEeCCCcEEEEEEECCeEEEE
Confidence 888999875544455666666655 32 356689999887654 23345678889988866677788887654
No 33
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=98.33 E-value=0.00017 Score=71.73 Aligned_cols=138 Identities=16% Similarity=0.040 Sum_probs=84.9
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEE---EEec--CCCccccCHHHHHHHHHHHHHHHHHHcCCCc-cC
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLAR---AAAG--CSNHNSVGEDAARETIEKVMADALLKSGSNR-SA 94 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~---~~~~--~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~-~~ 94 (370)
.+.+|.+|.|||++|+.++.+. ++|+.-.. ...| +... ..++++...|.+-+..++.++.... .+
T Consensus 74 ~g~~LaiD~GGTnlRvc~V~l~-------g~gt~~~~~sks~lp~e~~~~--~~~~~l~~~iadrl~~fi~~~~~~~~~~ 144 (466)
T COG5026 74 SGSVLAIDLGGTNLRVCLVVLG-------GDGTFDIEQSKSFLPVECRDS--ESRDELFGFIADRLAAFIKEQHPSGYGS 144 (466)
T ss_pred CCCEEEEecCCceEEEEEEEeC-------CCCCcccccCcccCchhhccC--CChHHHHHHHHHHHHHHHHHhCchhccC
Confidence 4689999999999999999872 13332211 1111 2221 2578899999999999888765321 12
Q ss_pred cceEEEeecCCCChh---------h----------HH----HHHHHHHhhCCCCceEEEeChHHHHHHhhc-CCCCCeEE
Q 017527 95 VRAVCLAVSGVNHPT---------D----------QQ----RILNWLRDIFPGNVRLYVHNDALAALASGT-MGKLHGCV 150 (370)
Q Consensus 95 v~~IgIgvpG~~~~~---------~----------~~----~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~-~g~~~~v~ 150 (370)
-.-+|+..+=+.++. | +. -|.+.|+++.-.-.-+.|.||+.+.+++.. .+.++.+.
T Consensus 145 ~l~~gfTFSYP~~q~sin~g~l~rwTKgf~i~e~ig~dvv~~l~e~l~~r~~pi~v~aviNDttgtlla~~yt~~~~~iG 224 (466)
T COG5026 145 KLPIGFTFSYPLNQTSINEGQLIRWTKGFDIPEVIGTDVVRLLQEALSARNLPIRVVAVINDTTGTLLASVYTSSETIIG 224 (466)
T ss_pred cceeeEEEeccccccccCceeeEeecccCcchhhhhhhHHHHHHHHHHhcCCceEEEEEecccHHHHHHHhhcCCCCeEE
Confidence 222444444332211 1 11 245555555421112568999999988764 46689999
Q ss_pred EEEcccceeeeeccCCc
Q 017527 151 LIAGTGTIAYGFTEDGR 167 (370)
Q Consensus 151 l~~GTGi~g~gii~dG~ 167 (370)
++.|||.+|+-+..-|+
T Consensus 225 ~IfGTGtN~~y~e~~~~ 241 (466)
T COG5026 225 IIFGTGTNGCYCEPKGR 241 (466)
T ss_pred EEEecCccceEEeeccc
Confidence 99999999975554343
No 34
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=98.27 E-value=6.9e-07 Score=91.56 Aligned_cols=101 Identities=13% Similarity=0.147 Sum_probs=79.2
Q ss_pred EEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCC------ccccCHHHHHHHHHHHHHHHHHHcCCCccCcceE
Q 017527 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSN------HNSVGEDAARETIEKVMADALLKSGSNRSAVRAV 98 (370)
Q Consensus 25 lGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n------~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~I 98 (370)
||||+|.|++|++++|. +|+++.+.+.+.+. ....++++.++.+.+++++++++++.++.+|.+|
T Consensus 1 lgIDiGtt~ik~~l~d~---------~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~l~~~i~~~~~~~~~~~~~I~gI 71 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDE---------QGEVIASGSAPHTVISPHPGWSEQDPEDWWDATEEAIKELLEQASEMGQDIKGI 71 (481)
T ss_pred CceeecCcceEEEEECC---------CCCEEEEEeecccccCCCCCCeeeCHHHHHHHHHHHHHHHHHhcCCCcccEEEE
Confidence 68999999999999999 89999888766531 0124688999999999999999988887889999
Q ss_pred EEe--ecCCC--Chhh--------H--HHH---HHHHHhhCCCCceEEEeChHHH
Q 017527 99 CLA--VSGVN--HPTD--------Q--QRI---LNWLRDIFPGNVRLYVHNDALA 136 (370)
Q Consensus 99 gIg--vpG~~--~~~~--------~--~~l---~~~L~~~f~~~~pV~V~NDa~a 136 (370)
|++ .||++ +... + .+. .+.|++.++ .|++++|+++.
T Consensus 72 gvs~~~~g~v~~d~~g~~l~~~i~W~D~r~~~~~~~l~~~~~--~~~~~~~~g~~ 124 (481)
T TIGR01312 72 GISGQMHGLVLLDANGEVLRPAILWNDTRTAQECEELEAELG--DERVLEITGNL 124 (481)
T ss_pred EEecCCceeEEECCCcCCCccchhhhccchHHHHHHHHHhcC--HhHHHHHHCCC
Confidence 999 99986 5321 1 123 667777776 67878887764
No 35
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=98.15 E-value=0.0013 Score=61.48 Aligned_cols=129 Identities=20% Similarity=0.155 Sum_probs=82.4
Q ss_pred EEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCC---CccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEee
Q 017527 26 GLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS---NHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (370)
Q Consensus 26 GVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~---n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgv 102 (370)
|+|+|.|+++++..+. ++..++....+.. +..-.+.+.+...|..+.+.+-...+ .++..+.+++
T Consensus 1 g~dig~~~ik~v~~~~---------~~~~~~~~~~~~~~~~~g~I~d~~~~~~~l~~l~~~a~~~~g---~~~~~vvisV 68 (239)
T TIGR02529 1 GVDLGTANIVIVVLDE---------DGQPVAGVMQFADVVRDGIVVDFLGAVEIVRRLKDTLEQKLG---IELTHAATAI 68 (239)
T ss_pred CCCcccceEEEEEEec---------CCCEEEEEecccccccCCeEEEhHHHHHHHHHHHHHHHHHhC---CCcCcEEEEE
Confidence 7899999999999887 4444444433221 11112345555545454444323333 3567888999
Q ss_pred cCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhcCCCCCeEEEEEcccceeeeeccCCceEe
Q 017527 103 SGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDAR 170 (370)
Q Consensus 103 pG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~~g~~~~v~l~~GTGi~g~gii~dG~l~~ 170 (370)
|..-++..+..+.+.++.. +. .++.+.|+..|++++ ++..+.+++-+|.|.--..++.+|++..
T Consensus 69 P~~~~~~~r~a~~~a~~~a-Gl-~~~~li~ep~Aaa~~--~~~~~~~vvDiGggtt~i~i~~~G~i~~ 132 (239)
T TIGR02529 69 PPGTIEGDPKVIVNVIESA-GI-EVLHVLDEPTAAAAV--LQIKNGAVVDVGGGTTGISILKKGKVIY 132 (239)
T ss_pred CCCCCcccHHHHHHHHHHc-CC-ceEEEeehHHHHHHH--hcCCCcEEEEeCCCcEEEEEEECCeEEE
Confidence 9876555555666666655 32 488999999998774 2334568888998876666777887654
No 36
>PRK00047 glpK glycerol kinase; Provisional
Probab=98.08 E-value=1.4e-05 Score=82.53 Aligned_cols=79 Identities=22% Similarity=0.199 Sum_probs=63.0
Q ss_pred cCCCcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecC------CCccccCHHHHHHHHHHHHHHHHHHcCCC
Q 017527 18 SGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGC------SNHNSVGEDAARETIEKVMADALLKSGSN 91 (370)
Q Consensus 18 ~~~~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~------~n~~~~~~~~~~~~l~~~i~~~l~~~~~~ 91 (370)
|.|..|+||||+|+|++|++++|. +|+++...+.+. +.....+++.+.+.+.+++++++++.+.+
T Consensus 1 ~~m~~~~lgiD~GTts~Ka~l~d~---------~g~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~ 71 (498)
T PRK00047 1 MMMKKYILALDQGTTSSRAIIFDH---------DGNIVSVAQKEFTQIFPQPGWVEHDPNEIWASQLSVIAEALAKAGIS 71 (498)
T ss_pred CCccCEEEEEecCCCceEEEEECC---------CCCEEEEEeeeccccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcCCC
Confidence 345569999999999999999998 899998865332 11112478999999999999999988887
Q ss_pred ccCcceEEEeecCC
Q 017527 92 RSAVRAVCLAVSGV 105 (370)
Q Consensus 92 ~~~v~~IgIgvpG~ 105 (370)
+++|.+||++.-+.
T Consensus 72 ~~~I~~Igis~~~~ 85 (498)
T PRK00047 72 PDQIAAIGITNQRE 85 (498)
T ss_pred hhHeeEEEEecCcc
Confidence 77899888876543
No 37
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=98.06 E-value=2.3e-05 Score=73.23 Aligned_cols=74 Identities=22% Similarity=0.278 Sum_probs=60.4
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCC------ccccCHHHHHHHHHHHHHHHHHHcCCCccCcc
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSN------HNSVGEDAARETIEKVMADALLKSGSNRSAVR 96 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n------~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~ 96 (370)
|+||||+|.|++|++++|. +|+++...+.+.+. ....+++++.+.+.+++++++++.+..+.+|.
T Consensus 1 y~lgiDiGTts~K~~l~d~---------~g~iv~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~~I~ 71 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDE---------DGKIVASASRPYPYYTPEPGWAEQDPDEIWEAICEALKELLSQAGIDPEQIK 71 (245)
T ss_dssp EEEEEEECSSEEEEEEEET---------TSCEEEEEEEEETEBCSSTTEEEE-HHHHHHHHHHHHHHHHHHCTSCGGGEE
T ss_pred CEEEEEEcccceEEEEEeC---------CCCEEEEEEEeeeeccccccccccChHHHHHHHHHHHHHHHhhcCcccceeE
Confidence 7999999999999999998 89999887654321 11257999999999999999999988888999
Q ss_pred eEEEeecCC
Q 017527 97 AVCLAVSGV 105 (370)
Q Consensus 97 ~IgIgvpG~ 105 (370)
+|+++.-+.
T Consensus 72 aI~is~~~~ 80 (245)
T PF00370_consen 72 AIGISGQGH 80 (245)
T ss_dssp EEEEEE-SS
T ss_pred EEEeccccC
Confidence 988876553
No 38
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=98.04 E-value=0.0032 Score=60.46 Aligned_cols=65 Identities=14% Similarity=0.195 Sum_probs=45.5
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEee
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgv 102 (370)
+++|||+|.|.++++++|. ++++.....++... + .+...+++++++++.+....++..++.
T Consensus 33 ~~~GIDiGStt~K~Vlld~----------~~i~~~~~~~tg~~----~---~~~a~~~l~~~l~~~g~~~~~v~~~~~-- 93 (293)
T TIGR03192 33 ITCGIDVGSVSSQAVLVCD----------GELYGYNSMRTGNN----S---PDSAKNALQGIMDKIGMKLEDINYVVG-- 93 (293)
T ss_pred EEEEEEeCchhEEEEEEeC----------CEEEEEEeecCCCC----H---HHHHHHHHHHHHHHcCCcccceEEEEE--
Confidence 8999999999999999996 57776666544321 2 234556667777777776667776654
Q ss_pred cCCC
Q 017527 103 SGVN 106 (370)
Q Consensus 103 pG~~ 106 (370)
.|..
T Consensus 94 TGyG 97 (293)
T TIGR03192 94 TGYG 97 (293)
T ss_pred ECcc
Confidence 4554
No 39
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=97.88 E-value=5.7e-05 Score=77.99 Aligned_cols=75 Identities=21% Similarity=0.224 Sum_probs=61.0
Q ss_pred cEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCC------ccccCHHHHHHHHHHHHHHHHHHcCCCccCc
Q 017527 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSN------HNSVGEDAARETIEKVMADALLKSGSNRSAV 95 (370)
Q Consensus 22 ~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n------~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v 95 (370)
.|+||||+|+|++|++++|. +|+++...+.+... ....+++.+.+.+.+++++++++++.++++|
T Consensus 1 ~~~lgiDiGtt~iKa~l~d~---------~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~~~i 71 (493)
T TIGR01311 1 PYILAIDQGTTSSRAIVFDK---------DGNIVAIHQKEFTQIFPKPGWVEHDPMEIWESVLSCIAEALAKAGIKPDDI 71 (493)
T ss_pred CeEEEEecCCCceEEEEECC---------CCCEEEEEeeeccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcCCChhhe
Confidence 37999999999999999998 89999887764321 1124688999999999999999988777789
Q ss_pred ceEEEeecCC
Q 017527 96 RAVCLAVSGV 105 (370)
Q Consensus 96 ~~IgIgvpG~ 105 (370)
.+||++.-+.
T Consensus 72 ~aIgis~~~~ 81 (493)
T TIGR01311 72 AAIGITNQRE 81 (493)
T ss_pred eEEEEecCcc
Confidence 8888876543
No 40
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=97.87 E-value=0.0013 Score=62.14 Aligned_cols=255 Identities=20% Similarity=0.192 Sum_probs=144.1
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHH---HHHHHHHHHHcCCCccCcce
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETI---EKVMADALLKSGSNRSAVRA 97 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l---~~~i~~~l~~~~~~~~~v~~ 97 (370)
+.-++-|.-|.|+|++++++. +-.+ ......-+-..-...+.+.+++ .+++.+.+.+.+.+.+.+.+
T Consensus 2 ~yriltINPGststKlaVfe~---------ek~i-fe~tlrhs~eEl~~f~~i~dQ~~fR~~~i~~~i~e~g~~i~~~dA 71 (358)
T COG3426 2 MYRILTINPGSTSTKLAVFED---------EKEI-FEKTLRHSLEELEKFKRIPDQFEFRKDAILEFIDEQGYNISKFDA 71 (358)
T ss_pred ceeEEEecCCCccceEEEecC---------chHh-hHHHhhcCHHHHHHHhhhhHhHhHHHHHHHHHHHHhCCCcCCccc
Confidence 445888999999999999976 2222 2211110000000012233332 36788888888887777776
Q ss_pred EEEeecCCCCh----------hh----------------HHHHHHHHHhhCCCCceEEEeChHH------HHHHhh----
Q 017527 98 VCLAVSGVNHP----------TD----------------QQRILNWLRDIFPGNVRLYVHNDAL------AALASG---- 141 (370)
Q Consensus 98 IgIgvpG~~~~----------~~----------------~~~l~~~L~~~f~~~~pV~V~NDa~------aa~~g~---- 141 (370)
|. |=-|+..| .. .-.+...+.+.++ +|.||..-+. .|-.++
T Consensus 72 vv-gRGGLL~pi~gGTY~Vn~~M~~~lk~~~~G~haSnLGaiiA~~ia~~~g--vPayIVDPvvVDEm~~~Ar~SG~p~i 148 (358)
T COG3426 72 VV-GRGGLLRPIPGGTYVVNEKMLKDLKNGVQGEHASNLGAIIANRIAKALG--VPAYIVDPVVVDEMEDVARFSGIPEI 148 (358)
T ss_pred ee-ecCccccccCCceeEeCHHHHHHHHcCCCCcchhhhhHHHHHHHhhhcC--CCeeeeCceehhhcchhhhhcCCccc
Confidence 52 33444332 11 1245556666666 6766544321 121110
Q ss_pred --------------------cCCC----CCeEEEEEcccceeeeeccCCceEe----eCCCCCCcCCCCchHHHHHHHHH
Q 017527 142 --------------------TMGK----LHGCVLIAGTGTIAYGFTEDGRDAR----AAGAGPILGDWGSGYGIAAQALT 193 (370)
Q Consensus 142 --------------------~~g~----~~~v~l~~GTGi~g~gii~dG~l~~----aGg~G~llgd~Gs~~~iG~~~~~ 193 (370)
..|+ -++|+..+|.|+ ..+-..+|+..- .-+=|.+ +.+-
T Consensus 149 ~RkSiFHALN~KAVarr~A~e~gk~yee~n~vVaHmGggi-SV~ah~~GrvIDvnnaldgeGPf-sper----------- 215 (358)
T COG3426 149 ERKSIFHALNQKAVARRAAKEVGKRYEEMNIVVAHMGGGI-SVGAHKQGRVIDVNNALDGEGPF-SPER----------- 215 (358)
T ss_pred hhHHHHHHhhHHHHHHHHHHHhccchhhheEEEEeccCce-EEEEecCCcEEeccCCCCCCCCC-Cccc-----------
Confidence 0122 477888899997 556668898753 1111221 1111
Q ss_pred HHHHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCC-hHHH-hhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 017527 194 AVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPS-WARI-AALVPVVVSCAEAGDEVANKILQDSVEELALSVK 271 (370)
Q Consensus 194 ~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~~~-~~~~-a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~ 271 (370)
.|..|...+.+.+.. +--+.++++........ -+-. ...+.+|...+++||..|+.+++-++..+++-|.
T Consensus 216 ------sG~lP~~dlv~lcfS--gk~t~~El~k~i~g~gG~~aylGT~d~~~v~~~~~~Gd~~a~~~~~AmayQVaKeIG 287 (358)
T COG3426 216 ------SGTLPTGDLVRLCFS--GKYTEEELLKKITGKGGLVAYLGTNDAKEVERRIEQGDEKAKLAYEAMAYQVAKEIG 287 (358)
T ss_pred ------CCCCChHHHHHHHhc--CcccHHHHHHHhhcCCceEEEeccchHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH
Confidence 122222222222221 11134455544321110 0000 1235788899999999999999999999999999
Q ss_pred HHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCC
Q 017527 272 AVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYP 318 (370)
Q Consensus 272 ~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~~p 318 (370)
.....|. -.|+.|||.||++.. +.| .+.+.+.+.--.|
T Consensus 288 ~~savL~------G~vDaIvLTGGiA~~-~~f--~~~I~~~v~~iap 325 (358)
T COG3426 288 AMSAVLK------GKVDAIVLTGGIAYE-KLF--VDAIEDRVSWIAP 325 (358)
T ss_pred hhhhhcC------CCCCEEEEecchhhH-HHH--HHHHHHHHhhhcc
Confidence 9999886 248999999999864 455 7778777766333
No 41
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=97.85 E-value=0.012 Score=58.84 Aligned_cols=65 Identities=25% Similarity=0.341 Sum_probs=48.4
Q ss_pred cEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEe
Q 017527 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA 101 (370)
Q Consensus 22 ~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIg 101 (370)
++++|||+|+|.+++++++. ++++.....++.. + .+.+.+++++++++.+++..++..+++
T Consensus 144 g~~lGIDiGSTttK~Vl~dd----------~~Ii~~~~~~t~~-----~---~~~a~~~l~~~l~~~Gl~~~di~~i~~- 204 (404)
T TIGR03286 144 GLTLGIDSGSTTTKAVVMED----------NEVIGTGWVPTTK-----V---IESAEEAVERALEEAGVSLEDVEAIGT- 204 (404)
T ss_pred CEEEEEEcChhheeeEEEcC----------CeEEEEEEeeccc-----H---HHHHHHHHHHHHHHcCCCccceeEEEe-
Confidence 48999999999999999985 6888776654421 1 455777788888888887777776655
Q ss_pred ecCCC
Q 017527 102 VSGVN 106 (370)
Q Consensus 102 vpG~~ 106 (370)
.|.-
T Consensus 205 -TGyG 208 (404)
T TIGR03286 205 -TGYG 208 (404)
T ss_pred -eeec
Confidence 4554
No 42
>PRK04123 ribulokinase; Provisional
Probab=97.81 E-value=8.5e-05 Score=77.69 Aligned_cols=75 Identities=20% Similarity=0.194 Sum_probs=60.5
Q ss_pred CCcEEEEEEcCccceEEEEEe-CCCCCCCCCCCCCeEEEEEecCCCc------------cccCHHHHHHHHHHHHHHHHH
Q 017527 20 GREVILGLDGGTTSTVCICMP-VISMSDSLPDPLPVLARAAAGCSNH------------NSVGEDAARETIEKVMADALL 86 (370)
Q Consensus 20 ~~~~vlGVDiGgT~i~~~l~d-~~~~~~~~~~~g~il~~~~~~~~n~------------~~~~~~~~~~~l~~~i~~~l~ 86 (370)
|+.|+||||+|+|++|++++| . +|+++.+...+.++. ..++++++.+.+.++++++++
T Consensus 1 ~~~~~lgiD~GTts~Ka~l~d~~---------~g~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~i~~~~~ 71 (548)
T PRK04123 1 MMAYVIGLDFGTDSVRALLVDCA---------TGEELATAVVEYPHWVKGRYLDLPPNQALQHPLDYIESLEAAIPAVLK 71 (548)
T ss_pred CCcEEEEEecCCCceEEEEEECC---------CCcEeEEEEeeccccccccccCCCCCceeeCHHHHHHHHHHHHHHHHH
Confidence 456999999999999999999 6 799988875544311 124688899999999999999
Q ss_pred HcCCCccCcceEEEeec
Q 017527 87 KSGSNRSAVRAVCLAVS 103 (370)
Q Consensus 87 ~~~~~~~~v~~IgIgvp 103 (370)
+++.++.+|.+||++--
T Consensus 72 ~~~~~~~~I~aIgis~~ 88 (548)
T PRK04123 72 EAGVDPAAVVGIGVDFT 88 (548)
T ss_pred HcCCChhhEEEEEEecc
Confidence 88887778998888754
No 43
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=97.78 E-value=0.00013 Score=75.97 Aligned_cols=75 Identities=19% Similarity=0.168 Sum_probs=60.4
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCC--------CccccCHHHHHHHHHHHHHHHHHHcCCCc
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS--------NHNSVGEDAARETIEKVMADALLKSGSNR 92 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~--------n~~~~~~~~~~~~l~~~i~~~l~~~~~~~ 92 (370)
+.|+||||+|+|++|++++|. +|+++.....+.+ .....++++..+.+.+++++++++++.++
T Consensus 2 m~~~lgID~GTts~Ka~l~d~---------~G~~l~~~~~~~~~~~~~~~~g~~Eqd~~~~w~~~~~~l~~~~~~~~~~~ 72 (520)
T PRK10939 2 MSYLMALDAGTGSIRAVIFDL---------NGNQIAVGQAEWRHLAVPDVPGSMEFDLEKNWQLACQCIRQALQKAGIPA 72 (520)
T ss_pred CcEEEEEecCCCceEEEEECC---------CCCEEEEEeccccccCCCCCCCCeeECHHHHHHHHHHHHHHHHHHcCCCc
Confidence 359999999999999999999 8999987754311 11224688999999999999998888777
Q ss_pred cCcceEEEeecC
Q 017527 93 SAVRAVCLAVSG 104 (370)
Q Consensus 93 ~~v~~IgIgvpG 104 (370)
.+|.+||++..+
T Consensus 73 ~~I~aI~~s~~~ 84 (520)
T PRK10939 73 SDIAAVSATSMR 84 (520)
T ss_pred cceEEEEEECCc
Confidence 789998887553
No 44
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=97.73 E-value=0.00012 Score=76.55 Aligned_cols=72 Identities=19% Similarity=0.198 Sum_probs=58.7
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecC------CCccccCHHHHHHHHHHHHHHHHHHcCCCccCcc
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGC------SNHNSVGEDAARETIEKVMADALLKSGSNRSAVR 96 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~------~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~ 96 (370)
++||||+|+|++|++++|. +|+++.+...+. +.....+++++.+.+.+++++++++.+..+.+|.
T Consensus 1 ~~lgID~GTts~Ka~l~d~---------~G~i~~~~~~~~~~~~~~~g~~eqdp~~~~~~~~~~i~~~~~~~~~~~~~I~ 71 (541)
T TIGR01315 1 HYIGVDVGTGSARACIIDS---------TGDILALAAQNIKTWTPSSGLEGQSSVYIWQAICNCVKQVLAESKVDPNSVK 71 (541)
T ss_pred CEEEEEecCcCEEEEEEcC---------CCCEEEEEEeeeeeccCCCCcccCCHHHHHHHHHHHHHHHHHHcCCChhheE
Confidence 3799999999999999998 899998765321 1122357899999999999999998887777899
Q ss_pred eEEEeec
Q 017527 97 AVCLAVS 103 (370)
Q Consensus 97 ~IgIgvp 103 (370)
+|||+.+
T Consensus 72 ~Igis~~ 78 (541)
T TIGR01315 72 GIGFDAT 78 (541)
T ss_pred EEEeccc
Confidence 9998864
No 45
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=97.70 E-value=0.00046 Score=63.21 Aligned_cols=114 Identities=15% Similarity=0.054 Sum_probs=72.2
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCC--eE-EEEEecCC-CccccCHHHHHHHHHHHHHHHHHHcCC-CccCc
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLP--VL-ARAAAGCS-NHNSVGEDAARETIEKVMADALLKSGS-NRSAV 95 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~--il-~~~~~~~~-n~~~~~~~~~~~~l~~~i~~~l~~~~~-~~~~v 95 (370)
.+.+|++|+|||++|++++.+ .|. +. .+.....+ .......+++++-|.+.|.+++++... ...+.
T Consensus 62 ~G~~LalDlGGTnlRv~~V~L---------~g~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~f~~~~~~~~~~~~ 132 (206)
T PF00349_consen 62 KGDFLALDLGGTNLRVALVEL---------SGNGKVEIEQEKYKIPEELMNGSGEELFDFIADCIAEFLKEHNLESRDEK 132 (206)
T ss_dssp EEEEEEEEESSSSEEEEEEEE---------ESSSEEEEEEEEEE--HHHHTSBHHHHHHHHHHHHHHHHHHTTTTSTTSE
T ss_pred CceEEEEeecCcEEEEEEEEE---------cCCCCceeeeccccCChHHhcCCcccHHHHHHHHHHHHHHHhcccccccc
Confidence 468999999999999999998 333 21 22222222 211123588999999999999998765 33455
Q ss_pred ceEEEeecCCCChh---------h--------------HHHHHHHHHhhCCC-CceEEEeChHHHHHHhhcC
Q 017527 96 RAVCLAVSGVNHPT---------D--------------QQRILNWLRDIFPG-NVRLYVHNDALAALASGTM 143 (370)
Q Consensus 96 ~~IgIgvpG~~~~~---------~--------------~~~l~~~L~~~f~~-~~pV~V~NDa~aa~~g~~~ 143 (370)
..+|+..+=+.+.. | ...|.+.|+++--. ...+.|.||+.+.++++.+
T Consensus 133 l~lGfTFSFP~~q~~~~~g~li~wtKgf~~~~~~G~dv~~lL~~al~r~~~~~v~v~aivNDTVgTLla~~Y 204 (206)
T PF00349_consen 133 LPLGFTFSFPVEQTSLNSGTLIRWTKGFDISGVVGKDVVELLQDALKRRGLPNVKVVAIVNDTVGTLLAGAY 204 (206)
T ss_dssp EEEEEEEESSEEESSTTEEEE----TT---BTGTTSBHHHHHHHHHHHHTSSEEEEEEEE-HHHHHHHHHHT
T ss_pred cceEEEEEEEEEeccCCCeEEEEeeccccccCCCCCccchhHHHHHHHhcccCcceEEEEECCHHHhhhhhc
Confidence 56777777663211 1 12455666555321 1357899999999887654
No 46
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=97.64 E-value=0.00022 Score=73.88 Aligned_cols=77 Identities=22% Similarity=0.198 Sum_probs=62.3
Q ss_pred CCcEEEEEEcCccceEEEEEeCCCCCCCCCCC-CCeEEEEEecCCCc------cccCHHHHHHHHHHHHHHHHHHcCCCc
Q 017527 20 GREVILGLDGGTTSTVCICMPVISMSDSLPDP-LPVLARAAAGCSNH------NSVGEDAARETIEKVMADALLKSGSNR 92 (370)
Q Consensus 20 ~~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~-g~il~~~~~~~~n~------~~~~~~~~~~~l~~~i~~~l~~~~~~~ 92 (370)
|+.|+||||+|+|++|++++|. + ++++...+....-. ...++++..+.+.+++++++++..++.
T Consensus 2 ~~~~~lgIDiGTt~~Kavl~d~---------~~~~~~~~~~~~~~~~~~~~g~~e~d~~~~w~~~~~ai~~l~~~~~~~~ 72 (502)
T COG1070 2 MMKYVLGIDIGTTSVKAVLFDE---------DGGEVVATARFENPVSTPQPGWAEQDPDELWQAILEALRQLLEESKIDP 72 (502)
T ss_pred CccEEEEEEcCCCcEEEEEEeC---------CCCeEEEEeeccccccCCCCCCcccCHHHHHHHHHHHHHHHHHhcccCh
Confidence 3569999999999999999999 6 78887765543211 125799999999999999999988777
Q ss_pred cCcceEEEeecCC
Q 017527 93 SAVRAVCLAVSGV 105 (370)
Q Consensus 93 ~~v~~IgIgvpG~ 105 (370)
++|.+|+|+--|.
T Consensus 73 ~~I~aI~is~~~~ 85 (502)
T COG1070 73 DAIAAIGISGQGH 85 (502)
T ss_pred hhceEEEEecccc
Confidence 8899888876554
No 47
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=97.63 E-value=0.0002 Score=74.69 Aligned_cols=72 Identities=17% Similarity=0.175 Sum_probs=58.4
Q ss_pred EEEEEEcCccceEEEEEe-CCCCCCCCCCCCCeEEEEEecCC-----------------CccccCHHHHHHHHHHHHHHH
Q 017527 23 VILGLDGGTTSTVCICMP-VISMSDSLPDPLPVLARAAAGCS-----------------NHNSVGEDAARETIEKVMADA 84 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d-~~~~~~~~~~~g~il~~~~~~~~-----------------n~~~~~~~~~~~~l~~~i~~~ 84 (370)
|+||||+|+|++|++++| . +|+++.....+.+ ....+++++..+.+.++++++
T Consensus 2 ~~lgiD~GTss~Ka~l~d~~---------~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~~~~~ 72 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVDVA---------TGEEIATAVEWYRHWVKGQFLPKTGAKLPNDQALQHPADYIEVLEAAIPTV 72 (536)
T ss_pred eEEEEecCCCceEEEEEECC---------CCcEeeeeeeccccccccccCCCccccCCCCccccCHHHHHHHHHHHHHHH
Confidence 799999999999999999 7 7999977654321 112356899999999999999
Q ss_pred HHHcCCCccCcceEEEeec
Q 017527 85 LLKSGSNRSAVRAVCLAVS 103 (370)
Q Consensus 85 l~~~~~~~~~v~~IgIgvp 103 (370)
+++.+.++.+|.+||++--
T Consensus 73 ~~~~~~~~~~I~aI~~s~q 91 (536)
T TIGR01234 73 LAELGVDPADVVGIGVDFT 91 (536)
T ss_pred HHHcCCCHHHEEEEEEecC
Confidence 9998877777998887653
No 48
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=97.61 E-value=0.00026 Score=73.27 Aligned_cols=72 Identities=15% Similarity=0.200 Sum_probs=58.0
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCC------ccccCHHHHHHHHHHHHHHHHHHcCCCccCcc
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSN------HNSVGEDAARETIEKVMADALLKSGSNRSAVR 96 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n------~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~ 96 (370)
|+||||+|+|++|++++|. +|+++.+...+.+. ....+++++.+.+.+++++++++.+.. .+|.
T Consensus 1 ~~lgiDiGtt~~K~~l~d~---------~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~-~~I~ 70 (505)
T TIGR01314 1 YMIGVDIGTTSTKAVLFEE---------NGKIVAKSSIGYPLYTPASGMAEENPEEIFEAVLVTIREVSINLEDE-DEIL 70 (505)
T ss_pred CEEEEeccccceEEEEEcC---------CCCEEEEEEeecccccCCCCCeeeCHHHHHHHHHHHHHHHHHhCCCc-CceE
Confidence 5899999999999999998 89999888763321 122468899999999999999876655 6788
Q ss_pred eEEEeecC
Q 017527 97 AVCLAVSG 104 (370)
Q Consensus 97 ~IgIgvpG 104 (370)
+|||+.-+
T Consensus 71 ~Igis~~~ 78 (505)
T TIGR01314 71 FVSFSTQM 78 (505)
T ss_pred EEEEeccc
Confidence 88887654
No 49
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=97.58 E-value=0.048 Score=51.74 Aligned_cols=63 Identities=16% Similarity=0.168 Sum_probs=41.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHH
Q 017527 242 PVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCIL 314 (370)
Q Consensus 242 ~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~ 314 (370)
.+|..+..+|-+.. .|+.-..+.+++-+.++++.++. .++.|++.||++.. +.+ .+.+++.+.
T Consensus 174 Sevi~~~~~G~~~e-dI~aGl~~sia~r~~~~~~~~~~------~~~~v~~~GGva~n-~~~--~~~le~~l~ 236 (262)
T TIGR02261 174 TDVINMVSRGISAP-NILKGIHESMADRLAKLLKSLGA------LDGTVLCTGGLALD-AGL--LEALKDAIQ 236 (262)
T ss_pred hhHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHhccCC------CCCcEEEECccccc-HHH--HHHHHHHhc
Confidence 35666677776554 55666666777777777777752 13469999998764 343 666777664
No 50
>PLN02295 glycerol kinase
Probab=97.58 E-value=0.00028 Score=73.25 Aligned_cols=72 Identities=19% Similarity=0.169 Sum_probs=57.3
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCC------CccccCHHHHHHHHHHHHHHHHHHcCCCccC--
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS------NHNSVGEDAARETIEKVMADALLKSGSNRSA-- 94 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~------n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~-- 94 (370)
++||||+|+|++|++++|. +|+++.....+.+ ....++++++.+.+.+++++++++++.++.+
T Consensus 1 ~vlgID~GTts~Ka~l~d~---------~G~~~~~~~~~~~~~~~~~G~~Eqdp~~~w~~~~~~i~~~~~~~~~~~~~i~ 71 (512)
T PLN02295 1 FVGAIDQGTTSTRFIIYDR---------DARPVASHQVEFTQIYPQAGWVEHDPMEILESVLTCIAKALEKAAAKGHNVD 71 (512)
T ss_pred CEEEEecCCCceEEEEECC---------CCCEEEEEeecccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcCCCccccc
Confidence 5899999999999999998 8999977655432 1122468999999999999999988877666
Q ss_pred --cceEEEeec
Q 017527 95 --VRAVCLAVS 103 (370)
Q Consensus 95 --v~~IgIgvp 103 (370)
|.+||++--
T Consensus 72 ~~i~aIg~s~q 82 (512)
T PLN02295 72 SGLKAIGITNQ 82 (512)
T ss_pred cceEEEEEecC
Confidence 577776653
No 51
>PRK13317 pantothenate kinase; Provisional
Probab=97.57 E-value=0.013 Score=56.11 Aligned_cols=115 Identities=17% Similarity=0.184 Sum_probs=64.1
Q ss_pred cEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEe
Q 017527 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA 101 (370)
Q Consensus 22 ~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIg 101 (370)
++.+|||+|+|.+++++++. ++++..+. .. + ...+.+.+. +.+ ..++..|.+.
T Consensus 2 ~~~iGIDiGstt~K~v~~~~---------~~~~~~~~-~~-~--------~~~~~~~~~----l~~----~~~~~~i~~T 54 (277)
T PRK13317 2 EMKIGIDAGGTLTKIVYLEE---------KKQRTFKT-EY-S--------AEGKKVIDW----LIN----LQDIEKICLT 54 (277)
T ss_pred CceEEEEeCcccEEEEEEcC---------CCeEEEEe-ec-c--------HHHHHHHHH----hhc----cCCceEEEEE
Confidence 48999999999999999997 56665443 11 1 112222222 221 1345555554
Q ss_pred ecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhh--cC-----CCCCeEEEEEcccceeeeeccCCceEeeCCC
Q 017527 102 VSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASG--TM-----GKLHGCVLIAGTGTIAYGFTEDGRDARAAGA 174 (370)
Q Consensus 102 vpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~--~~-----g~~~~v~l~~GTGi~g~gii~dG~l~~aGg~ 174 (370)
=.|-. .+.+.+ .++ .|+.=.....|...|. .. +..+++++..|||+ ..-.+.+++..|.++-
T Consensus 55 G~g~~------~~~~~~--~~~--~~~~~v~E~~a~~~g~~~l~~~~~~~~~~~~i~~iG~g~-si~~~~g~~~~r~~Gt 123 (277)
T PRK13317 55 GGKAG------YLQQLL--NYG--YPIAEFVEFEATGLGVRYLLKEEGHDLNDYIFTNIGTGT-SIHYVDGNSQRRVGGT 123 (277)
T ss_pred Ccchh------hhhHHH--hcC--CCeeeeHHHHHHHHHHHHHHHhcCCCCCcEEEEEecCce-EEEEEeCCceEEEccc
Confidence 33321 222222 233 5653244444443332 12 55789999999998 5556666667776654
No 52
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=97.57 E-value=0.00038 Score=72.10 Aligned_cols=73 Identities=19% Similarity=0.161 Sum_probs=58.5
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCC------CccccCHHHHHHHHHHHHHHHHHHcCCCcc--C
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS------NHNSVGEDAARETIEKVMADALLKSGSNRS--A 94 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~------n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~--~ 94 (370)
++||||+|+|++|++++|. +|+++...+.+.+ .....++++..+.+.+++++++++.+.++. +
T Consensus 3 ~~lgiDiGTts~Ka~l~d~---------~G~~v~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~~~ 73 (504)
T PTZ00294 3 YIGSIDQGTTSTRFIIFDE---------KGNVVSSHQIPHEQITPHPGWLEHDPEEILRNVYKCMNEAIKKLREKGPSFK 73 (504)
T ss_pred EEEEEecCCCceEEEEECC---------CCCEEEEEEEeecccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcCCCCccCc
Confidence 8999999999999999998 8999887655432 112256889999999999999988876655 7
Q ss_pred cceEEEeecC
Q 017527 95 VRAVCLAVSG 104 (370)
Q Consensus 95 v~~IgIgvpG 104 (370)
|.+||++.-+
T Consensus 74 I~aIgis~q~ 83 (504)
T PTZ00294 74 IKAIGITNQR 83 (504)
T ss_pred eEEEEeecCc
Confidence 8888887654
No 53
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=97.55 E-value=0.058 Score=53.21 Aligned_cols=65 Identities=26% Similarity=0.302 Sum_probs=42.4
Q ss_pred cEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEe
Q 017527 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA 101 (370)
Q Consensus 22 ~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIg 101 (370)
.++||||.|.|.|++++++. +..|...... ++.- .+. + ++.+++++++.+....+|. +++
T Consensus 135 ~~~LGID~GSTtTK~VLm~d---------~~~I~~~~~~-~t~g---~p~-~----~~~l~~~le~l~~~~~~I~--~~~ 194 (396)
T COG1924 135 MYTLGIDSGSTTTKAVLMED---------GKEILYGFYV-STKG---RPI-A----EKALKEALEELGEKLEEIL--GLG 194 (396)
T ss_pred cEEEEEecCCcceeEEEEeC---------CCeEEEEEEE-cCCC---Chh-H----HHHHHHHHHHcccChheee--eee
Confidence 58999999999999999997 4445555443 3322 122 2 4556666776666544555 555
Q ss_pred ecCCC
Q 017527 102 VSGVN 106 (370)
Q Consensus 102 vpG~~ 106 (370)
+.|+.
T Consensus 195 ~TGYG 199 (396)
T COG1924 195 VTGYG 199 (396)
T ss_pred eeccc
Confidence 66765
No 54
>PRK10331 L-fuculokinase; Provisional
Probab=97.43 E-value=0.00068 Score=69.59 Aligned_cols=72 Identities=22% Similarity=0.249 Sum_probs=56.0
Q ss_pred cEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCC------C--ccccCHHHHHHHHHHHHHHHHHHcCCCcc
Q 017527 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS------N--HNSVGEDAARETIEKVMADALLKSGSNRS 93 (370)
Q Consensus 22 ~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~------n--~~~~~~~~~~~~l~~~i~~~l~~~~~~~~ 93 (370)
.++||||+|+|++|++++|. +|+++...+.+.+ . ....+++++.+.+.+++++++++.. ..
T Consensus 2 ~~~lgID~GTt~~Ka~l~d~---------~G~~~~~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~~~~~~~--~~ 70 (470)
T PRK10331 2 DVILVLDCGATNVRAIAVDR---------QGKIVARASTPNASDIAAENSDWHQWSLDAILQRFADCCRQINSELT--EC 70 (470)
T ss_pred ceEEEEecCCCceEEEEEcC---------CCcEEEEEecccccccCCCCCCCcccCHHHHHHHHHHHHHHHHHhCC--cc
Confidence 48999999999999999998 8999988766522 1 1224788899999999999987652 34
Q ss_pred CcceEEEeecC
Q 017527 94 AVRAVCLAVSG 104 (370)
Q Consensus 94 ~v~~IgIgvpG 104 (370)
+|.+||++.-+
T Consensus 71 ~I~~I~is~~~ 81 (470)
T PRK10331 71 HIRGITVTTFG 81 (470)
T ss_pred ceEEEEEeccc
Confidence 68888776543
No 55
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=97.39 E-value=0.00043 Score=70.67 Aligned_cols=76 Identities=21% Similarity=0.203 Sum_probs=62.9
Q ss_pred CCcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEec------CCCccccCHHHHHHHHHHHHHHHHHHcCCCcc
Q 017527 20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG------CSNHNSVGEDAARETIEKVMADALLKSGSNRS 93 (370)
Q Consensus 20 ~~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~------~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~ 93 (370)
|+.|+||||.|..+-|++++|. + +|+++++.+.+ .++.....+.+.++.++..++++++++++++.
T Consensus 1 ~~~~~iGvDvGTgSaRA~v~D~------~--~G~~la~a~~p~~~~~~~~~~~~q~s~d~~~av~~aVr~~v~~agv~~~ 72 (544)
T COG1069 1 MMAYVIGVDVGTGSARAGVFDC------Q--TGTLLARAVRPYPMWQPGSNLAEQHSRDYWEAVCAAVRDVVAKAGVDPA 72 (544)
T ss_pred CccEEEEEeecCCceeEEEEEc------C--CCcchhhcccceeccccCccccccCHHHHHHHHHHHHHHHHHHcCCChh
Confidence 4569999999999999999998 1 48888776554 23443357899999999999999999999999
Q ss_pred CcceEEEeec
Q 017527 94 AVRAVCLAVS 103 (370)
Q Consensus 94 ~v~~IgIgvp 103 (370)
+|.+||+-.-
T Consensus 73 ~V~gIGvDaT 82 (544)
T COG1069 73 DVVGIGVDAT 82 (544)
T ss_pred HeeEEEEcce
Confidence 9999988654
No 56
>PRK15027 xylulokinase; Provisional
Probab=97.37 E-value=0.0007 Score=69.77 Aligned_cols=69 Identities=16% Similarity=0.151 Sum_probs=54.4
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCC------CccccCHHHHHHHHHHHHHHHHHHcCCCccCcc
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS------NHNSVGEDAARETIEKVMADALLKSGSNRSAVR 96 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~------n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~ 96 (370)
++||||+|+|++|++++|. +|++++..+.+.+ ....+++++..+.+.+++++++++. +.++|.
T Consensus 1 ~~lgID~GTts~Ka~l~d~---------~G~vva~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~~--~~~~I~ 69 (484)
T PRK15027 1 MYIGIDLGTSGVKVILLNE---------QGEVVASQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQH--SLQDVK 69 (484)
T ss_pred CEEEEEecccceEEEEEcC---------CCCEEEEEeecccccCCCCCccccCHHHHHHHHHHHHHHHHHhC--Ccccee
Confidence 4899999999999999998 8999987644332 1222468889999999999999865 335788
Q ss_pred eEEEee
Q 017527 97 AVCLAV 102 (370)
Q Consensus 97 ~IgIgv 102 (370)
+||++.
T Consensus 70 aI~is~ 75 (484)
T PRK15027 70 ALGIAG 75 (484)
T ss_pred EEEEec
Confidence 888864
No 57
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=97.36 E-value=0.031 Score=56.12 Aligned_cols=55 Identities=25% Similarity=0.258 Sum_probs=46.8
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCc
Q 017527 240 LVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEAN 300 (370)
Q Consensus 240 ~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~ 300 (370)
..++|.+.+++||+.|..+++-++..+++.|.++...|+ | ..+.||+.||+.+..
T Consensus 280 D~r~i~~~~~~gd~~A~la~d~~~y~i~k~Ig~~~a~l~--G----~vDaivfTGGige~~ 334 (388)
T PF00871_consen 280 DMREIEARIEEGDERAKLALDAFAYQIAKYIGAYAAVLE--G----GVDAIVFTGGIGENS 334 (388)
T ss_dssp -HHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHT--S----S-SEEEEEHHHHHHT
T ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhc--c----CCCEEEEccccccch
Confidence 468899999999999999999999999999999999994 0 269999999999864
No 58
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=97.32 E-value=0.001 Score=68.23 Aligned_cols=72 Identities=19% Similarity=0.220 Sum_probs=55.8
Q ss_pred cEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCC--------CccccCHHHHHHHHHHHHHHHHHHcCCCcc
Q 017527 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS--------NHNSVGEDAARETIEKVMADALLKSGSNRS 93 (370)
Q Consensus 22 ~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~--------n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~ 93 (370)
+++||||+|+|++|++++|. +|+++...+.+.+ .....+++++.+.+.+++++++.+ .++.
T Consensus 1 ~~ilgiD~GTss~K~~l~d~---------~g~~va~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~--~~~~ 69 (465)
T TIGR02628 1 EVILVLDCGATNLRAIAINR---------QGKIVASASTPNATKQAIENNDYHIWDLEAIWQKLADCCQQINSE--LTEK 69 (465)
T ss_pred CeEEEEecCCCcEEEEEEcC---------CCCEEEEEecccccCCCCCCCCceeeCHHHHHHHHHHHHHHHHhh--cChh
Confidence 37999999999999999998 8999987765421 111247889999999999999864 3446
Q ss_pred CcceEEEeecC
Q 017527 94 AVRAVCLAVSG 104 (370)
Q Consensus 94 ~v~~IgIgvpG 104 (370)
+|.+|+++.-|
T Consensus 70 ~I~aI~~s~~~ 80 (465)
T TIGR02628 70 HIRGIAVTTFG 80 (465)
T ss_pred ceEEEEEeccc
Confidence 79988886543
No 59
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=97.15 E-value=0.083 Score=50.63 Aligned_cols=118 Identities=16% Similarity=0.157 Sum_probs=67.5
Q ss_pred EEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEeec
Q 017527 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVS 103 (370)
Q Consensus 24 vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgvp 103 (370)
.+|||+|||-+|++..+. ++++.... .++. ..+++++-+. +..... +.+..|++.
T Consensus 2 ~iGiDiGgT~~Kiv~~~~---------~~~~~f~~-~~~~-----~~~~~~~~l~----~~~~~~----~~~~~i~~T-- 56 (279)
T TIGR00555 2 RIGIDIGGTLIKVVYEEP---------KGRRKFKT-FETT-----NIDKFIEWLK----NQIHRH----SRITTLCAT-- 56 (279)
T ss_pred eEEEEeCcceEEEEEEcC---------CCcEEEEE-eecc-----cHHHHHHHHH----HHHHhh----cCceEEEEE--
Confidence 589999999999999987 67776554 3432 2344444443 333222 223444443
Q ss_pred CCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhh-c-------CCCCCeEEEEEcccceeeeeccCC-ceEeeCCC
Q 017527 104 GVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASG-T-------MGKLHGCVLIAGTGTIAYGFTEDG-RDARAAGA 174 (370)
Q Consensus 104 G~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~-~-------~g~~~~v~l~~GTGi~g~gii~dG-~l~~aGg~ 174 (370)
|- ....+.+.+...|+ +++.-.....|...|. . .+..+.+++.+|||+ ..-. .++ +..|.||-
T Consensus 57 Gg----Ga~k~~~~~~~~~~--v~~~k~dE~~a~~~g~~~ll~~~~~~~~~p~llvnIGsGv-Si~~-v~~~~~~Rv~Gt 128 (279)
T TIGR00555 57 GG----GAFKFAELIYESAG--IQLHKFDEFDALIQGLNYLLKEEPKDDIYPYLLVNIGTGT-SILY-VDGDNYERVGGT 128 (279)
T ss_pred CC----cHHHHHHHhccccC--CcccchhHHHHHHHHHHHHhhcccCCCCCceEEEEecCCe-EEEE-EcCccEEEEcCc
Confidence 22 22466777777775 5554444555544332 1 123467899999997 5433 343 55666654
No 60
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=97.10 E-value=0.0015 Score=66.00 Aligned_cols=73 Identities=22% Similarity=0.253 Sum_probs=61.7
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecC------CCccccCHHHHHHHHHHHHHHHHHHcCCCccC
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGC------SNHNSVGEDAARETIEKVMADALLKSGSNRSA 94 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~------~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~ 94 (370)
+.|++++|-|.|++|+.++|. +|+++++.+.+. +..-..+|.++.++...++.+++.++++++.+
T Consensus 4 ~~yIlAiDqGTTssRaivfd~---------~g~iva~~q~e~~Q~yP~~GWVEhDp~eIw~~~~~~l~~a~~~~~i~~~~ 74 (499)
T COG0554 4 DKYILAIDQGTTSSRAIVFDE---------DGNIVAIAQREFTQIYPQPGWVEHDPLEIWASVRSVLKEALAKAGIKPGE 74 (499)
T ss_pred ccEEEEEecCCcceeEEEECC---------CCCchhhhhhhhhhhCCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 469999999999999999999 899998765443 22223579999999999999999999999999
Q ss_pred cceEEEee
Q 017527 95 VRAVCLAV 102 (370)
Q Consensus 95 v~~IgIgv 102 (370)
|.+|||.-
T Consensus 75 iaaIGITN 82 (499)
T COG0554 75 IAAIGITN 82 (499)
T ss_pred eEEEEeec
Confidence 99999864
No 61
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=97.01 E-value=0.42 Score=49.92 Aligned_cols=103 Identities=19% Similarity=0.191 Sum_probs=70.9
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCC-ccccCHHH----HHHHHHHHHHHHHHHcCCCccCcce
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSN-HNSVGEDA----ARETIEKVMADALLKSGSNRSAVRA 97 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n-~~~~~~~~----~~~~l~~~i~~~l~~~~~~~~~v~~ 97 (370)
++||||.-...+.+++++. +|+++......... ....-|+. =.++|..+++++++++++++.+|.+
T Consensus 2 ~il~iets~~~~s~a~~~~---------~~~~~~~~~~~~~~~~gg~~p~~~~~~H~~~l~~~i~~~l~~~~~~~~~id~ 72 (535)
T PRK09605 2 IVLGIEGTAWKTSAGIVDS---------DGDVLFNESDPYKPPSGGIHPREAAEHHAEAIPKVIKEALEEAGLKPEDIDL 72 (535)
T ss_pred EEEEEEccccceEEEEEeC---------CCcEEEEEEeeccCCcCCCChHHHHHHHHHHHHHHHHHHHHHcCCCHhhCCE
Confidence 6999999999999999986 56788766532110 01112333 3566888999999999999999999
Q ss_pred EEEee-cCCCCh-hhHHHHHHHHHhhCCCCceEEEeChHHH
Q 017527 98 VCLAV-SGVNHP-TDQQRILNWLRDIFPGNVRLYVHNDALA 136 (370)
Q Consensus 98 IgIgv-pG~~~~-~~~~~l~~~L~~~f~~~~pV~V~NDa~a 136 (370)
|+++. ||.-.. .-.....+-|...++ +|+.-.|--.+
T Consensus 73 iav~~gPg~~~~l~vg~~~ak~la~~~~--~~~~~v~h~~a 111 (535)
T PRK09605 73 VAFSQGPGLGPCLRVVATAARALALSLD--VPLIGVNHCVA 111 (535)
T ss_pred EEECCCCCcHhhHHHHHHHHHHHHHHhC--CCeecccHHHH
Confidence 99875 443211 123456777888887 89876665544
No 62
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=96.98 E-value=0.002 Score=57.51 Aligned_cols=63 Identities=25% Similarity=0.267 Sum_probs=49.2
Q ss_pred EEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEee
Q 017527 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (370)
Q Consensus 25 lGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgv 102 (370)
||||+|||+|.++++|. +..++...+.++. ++....-+.+.+++++.+.+.++++|..|-+|.
T Consensus 2 igIDvGGT~TD~v~~d~---------~~~~~~~~K~~Tt------~~d~~~gi~~al~~l~~~~~~~~~~i~~v~~gT 64 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDE---------DTGVVATAKVPTT------PDDPAEGILEALDALLEESGIDPSDIDRVRHGT 64 (176)
T ss_pred eeEecCCCcEEEEEEeC---------CCCEEEEEEeCCC------CcCHHHHHHHHHHhhhcccCCChhhCcEEEecc
Confidence 89999999999999998 4478888887764 234456677777788877777677888888775
No 63
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=96.93 E-value=0.44 Score=46.25 Aligned_cols=122 Identities=16% Similarity=0.141 Sum_probs=78.9
Q ss_pred EEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCc--------cccCHHHHHHHHHHHHHHHHHHcCCCccCcc
Q 017527 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNH--------NSVGEDAARETIEKVMADALLKSGSNRSAVR 96 (370)
Q Consensus 25 lGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~--------~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~ 96 (370)
|+||--...+.+++++. +++++...+...... .......=.++|..++++++++++.+++++.
T Consensus 1 LaidTs~~~~sval~~~---------~~~il~~~~~~~~~~~~~~gGi~p~~~~~~H~~~l~~~i~~~l~~~~~~~~did 71 (305)
T TIGR00329 1 LGIETSCDDTGVAIVDE---------EGNVLANIKISQIPLHAKYGGVVPEEASRHHAENIPPLLERALIESNVDKSEID 71 (305)
T ss_pred CEEecCccceEEEEEEC---------CCcEEEEEEecccccccccCCcCcchhHHHHHHHHHHHHHHHHHHcCCCHHHCC
Confidence 57888888888999975 477887654321100 0012344567788899999999999999999
Q ss_pred eEEEee-cCCCCh-hhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhcC--C--CCCeEEEEEcccc
Q 017527 97 AVCLAV-SGVNHP-TDQQRILNWLRDIFPGNVRLYVHNDALAALASGTM--G--KLHGCVLIAGTGT 157 (370)
Q Consensus 97 ~IgIgv-pG~~~~-~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~~--g--~~~~v~l~~GTGi 157 (370)
+|+++. ||.-.. .-.....+-|...++ +|++-.|.-.+-+++..+ + ...++++++..|.
T Consensus 72 ~iav~~GPG~~tglrvg~~~Ak~la~~~~--~p~~~v~hl~~ha~~a~~~s~~~~~~~l~l~vsGG~ 136 (305)
T TIGR00329 72 LIAYTQGPGLGGSLRVGATFARSLALSLD--KPLIGVNHLLGHIYAPRLDTNILQFPFVSLLVSGGH 136 (305)
T ss_pred EEEEecCCCchhhHHHHHHHHHHHHHHhC--CCEeecccHHHHHHHhhhhcCCCCCCcEEEEEcCCc
Confidence 999987 664322 112356777777777 898877776654333322 3 3455555543365
No 64
>PRK13324 pantothenate kinase; Reviewed
Probab=96.86 E-value=0.063 Score=50.92 Aligned_cols=127 Identities=15% Similarity=0.108 Sum_probs=78.1
Q ss_pred EEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEeec
Q 017527 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVS 103 (370)
Q Consensus 24 vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgvp 103 (370)
+|.||+|-|++++++++. ++++...+.++.... ...++ +...+..++...+....++..+.+ +
T Consensus 2 iL~iDiGNT~ik~gl~~~----------~~~~~~~r~~t~~~~-~t~de----~~~~l~~~~~~~~~~~~~i~~vii--s 64 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDG----------DRIVSQIRYATSSVD-STSDQ----MGVFLRQALRENSVDLGKIDGCGI--S 64 (258)
T ss_pred EEEEEeCCCceEEEEEEC----------CEEEEEEEEecCccc-cchHH----HHHHHHHHHHhcCCCccCCCeEEE--E
Confidence 789999999999999986 456665555442221 23344 444555566655555556776555 4
Q ss_pred CCCChhhHHHHHHHHHhhCCCCceEEEeCh-----------------HHHHHHhhc--CCCCCeEEEEEcccceeeeecc
Q 017527 104 GVNHPTDQQRILNWLRDIFPGNVRLYVHND-----------------ALAALASGT--MGKLHGCVLIAGTGTIAYGFTE 164 (370)
Q Consensus 104 G~~~~~~~~~l~~~L~~~f~~~~pV~V~ND-----------------a~aa~~g~~--~g~~~~v~l~~GTGi~g~gii~ 164 (370)
.++ |+-...+.+.+.+.|+. .|++|..+ -.++++++. +...+.+++-+||=+---.+..
T Consensus 65 SVv-P~l~~~l~~~~~~~~~~-~~~~v~~~~~~l~~~y~~p~~lG~DR~~~~vaA~~~~~~~~~iViD~GTA~T~d~v~~ 142 (258)
T PRK13324 65 SVV-PHLNYSLGSAVIKYFNI-KPFFISMDTTDLDMSAVEAHQVGADRIASCISAIADHPNKDLLIIDLGTATTFDLVTK 142 (258)
T ss_pred eCc-chhHHHHHHHHHHHhCC-CeEEEecCCccceeecCChhhccHHHHHHHHHHHHhcCCCCEEEEEcCCceEEEEEcC
Confidence 666 76667787777777862 35555322 223344432 3235789999999874433445
Q ss_pred CCceE
Q 017527 165 DGRDA 169 (370)
Q Consensus 165 dG~l~ 169 (370)
+|+..
T Consensus 143 ~g~~~ 147 (258)
T PRK13324 143 DKKYL 147 (258)
T ss_pred CCeEE
Confidence 66554
No 65
>PRK14878 UGMP family protein; Provisional
Probab=96.85 E-value=0.46 Score=46.48 Aligned_cols=99 Identities=16% Similarity=0.144 Sum_probs=64.1
Q ss_pred EEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCc-cccCH----HHHHHHHHHHHHHHHHHcCCCccCcceEE
Q 017527 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNH-NSVGE----DAARETIEKVMADALLKSGSNRSAVRAVC 99 (370)
Q Consensus 25 lGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~-~~~~~----~~~~~~l~~~i~~~l~~~~~~~~~v~~Ig 99 (370)
||||--...+.+++++. ++++...+...... ....| ..-.+.|..+++++++++++++.++.+|+
T Consensus 1 l~iets~~~~s~al~~~----------~~i~~~~~~~~~~~~gg~~p~~~~~~h~~~l~~~i~~~l~~a~~~~~did~Ia 70 (323)
T PRK14878 1 LGIESTAHTLGVGIVKE----------DKVLANVRDTYVPEKGGIHPREAAQHHAEVAPELLRKALEKAGISIEDIDAVA 70 (323)
T ss_pred CEEecCCcccEEEEEEC----------CEEEEEEEEecccCcCCcCccHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEE
Confidence 57887777788888875 55776554321110 00112 23346688999999999999999999999
Q ss_pred Eee-cCCCCh-hhHHHHHHHHHhhCCCCceEEEeChHH
Q 017527 100 LAV-SGVNHP-TDQQRILNWLRDIFPGNVRLYVHNDAL 135 (370)
Q Consensus 100 Igv-pG~~~~-~~~~~l~~~L~~~f~~~~pV~V~NDa~ 135 (370)
++. ||.... .-.....+.|...++ +|+.-.|=-.
T Consensus 71 vt~gPG~~~~lrvg~~~Ak~la~~~~--~p~~~v~h~~ 106 (323)
T PRK14878 71 VSQGPGLGPALRVGATAARALALKYN--KPLVPVNHCI 106 (323)
T ss_pred EecCCCcccchHHHHHHHHHHHHHhC--CCccccchHH
Confidence 987 664321 112355777777787 7876555443
No 66
>PLN02669 xylulokinase
Probab=96.84 E-value=0.0046 Score=64.99 Aligned_cols=73 Identities=15% Similarity=0.112 Sum_probs=55.5
Q ss_pred CCCcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCC----C-c----cccCHH----------HHHHHHHH
Q 017527 19 GGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS----N-H----NSVGED----------AARETIEK 79 (370)
Q Consensus 19 ~~~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~----n-~----~~~~~~----------~~~~~l~~ 79 (370)
+...|+||||+|+|++|++++|. +|+++........ . . ...+++ ..++.+..
T Consensus 5 ~~~~~~LGiD~GT~s~Ka~l~d~---------~g~vv~~a~~~~~~~~~~~~~~~gve~dp~~~~~~~~~~~~w~~al~~ 75 (556)
T PLN02669 5 PEDSLFLGFDSSTQSLKATVLDS---------NLRIVASEIVHFDSDLPHYGTKDGVYRDPKVNGRIVSPTLMWVEALDL 75 (556)
T ss_pred CCCCeEEEEecccCCeEEEEEcC---------CCCEEEEEEecCCcccCcCCCCCceEeCCcccCccCCCHHHHHHHHHH
Confidence 34569999999999999999998 8999988766532 0 0 012333 56699999
Q ss_pred HHHHHHHHcCCCccCcceEEEe
Q 017527 80 VMADALLKSGSNRSAVRAVCLA 101 (370)
Q Consensus 80 ~i~~~l~~~~~~~~~v~~IgIg 101 (370)
+++++. +.+.+.++|.+|+++
T Consensus 76 ~l~~l~-~~~~~~~~I~aIs~s 96 (556)
T PLN02669 76 LLQKLA-KEKFPFHKVVAISGS 96 (556)
T ss_pred HHHHHH-HcCCChhhEEEEEec
Confidence 999987 566677789988887
No 67
>PRK13326 pantothenate kinase; Reviewed
Probab=96.72 E-value=0.085 Score=50.16 Aligned_cols=122 Identities=15% Similarity=0.115 Sum_probs=73.8
Q ss_pred cEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEe
Q 017527 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA 101 (370)
Q Consensus 22 ~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIg 101 (370)
.+.|.||+|-|++++++++. ++++...+.++... .+.++....+.. +.+. ++..+.++
T Consensus 6 ~~~L~IDiGNT~ik~glf~~----------~~l~~~~r~~t~~~--~t~de~~~~l~~---------~~~~-~i~~viis 63 (262)
T PRK13326 6 SSQLIIDIGNTSISFALYKD----------NKMQIFCKLKTKLD--LSFDELYSFLKE---------KFDF-KVNQVFVS 63 (262)
T ss_pred cEEEEEEeCCCeEEEEEEEC----------CEEEEEEEeccCCC--CCHHHHHHHHhc---------CCCC-CCCEEEEE
Confidence 36899999999999999997 56766555554332 355654444333 2332 46665544
Q ss_pred ecCCCChhhHHHHHHHHHhhCCCCceEEE--------------------eChHHHHHHhhc--CCCCCeEEEEEccccee
Q 017527 102 VSGVNHPTDQQRILNWLRDIFPGNVRLYV--------------------HNDALAALASGT--MGKLHGCVLIAGTGTIA 159 (370)
Q Consensus 102 vpG~~~~~~~~~l~~~L~~~f~~~~pV~V--------------------~NDa~aa~~g~~--~g~~~~v~l~~GTGi~g 159 (370)
.++ |.....+.+.+++.|+. .|+++ -.|=.+++++++ ++..+.+++-+||=+--
T Consensus 64 --SVv-p~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~y~~~~~~LGaDR~a~~vaA~~~~~~~~~iVID~GTA~T~ 139 (262)
T PRK13326 64 --SVV-PVIDKVLINVIFSLYKV-KPLFIGFDLNYDLSFNPYNSNKFLLGSDVFANLVGAIEYYNINDALVVDLGTACTI 139 (262)
T ss_pred --eCc-ccHHHHHHHHHHHHhCC-CcEEEecCCccCceeecCCCCcccccHHHHHHHHHHHHhcCCCCEEEEECCCceEE
Confidence 555 55666777777776652 23333 234344555543 44357899999998743
Q ss_pred eeeccCCceE
Q 017527 160 YGFTEDGRDA 169 (370)
Q Consensus 160 ~gii~dG~l~ 169 (370)
--+..+|+..
T Consensus 140 D~V~~~g~~l 149 (262)
T PRK13326 140 FAVSRQDGIL 149 (262)
T ss_pred EEEcCCCcEE
Confidence 3333566553
No 68
>PRK12440 acetate kinase; Reviewed
Probab=96.60 E-value=0.039 Score=55.19 Aligned_cols=138 Identities=14% Similarity=0.140 Sum_probs=89.1
Q ss_pred CeEEEEEcccceeeeeccCCceEe-eCCCCCCc----CCCCchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCCh
Q 017527 147 HGCVLIAGTGTIAYGFTEDGRDAR-AAGAGPIL----GDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSP 221 (370)
Q Consensus 147 ~~v~l~~GTGi~g~gii~dG~l~~-aGg~G~ll----gd~Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~ 221 (370)
+.|++.+|.|+--+ -+.||+..- .-|++.+- +...+. .++ .+...+.+. + -+.
T Consensus 202 ~~Iv~HLG~G~Si~-Ai~~GksvDtsmG~tPl~GL~MgtRsG~------------------idp-~vv~~l~~~-~-~s~ 259 (397)
T PRK12440 202 SFISVHLGNGASVC-AIKNGQSVDTSMGFTPLSGLMMGTRCGD------------------LDP-GIIEFLLKK-G-WSQ 259 (397)
T ss_pred CEEEEEeCCCcEee-eeeCCEEEEcCCCCCCCCCCCCCCcCCC------------------CCH-HHHHHHHHc-C-CCH
Confidence 78999999998444 558999754 33444442 211111 111 122223332 3 244
Q ss_pred hhHHHHhccCCC---hHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCccc
Q 017527 222 DELIGWTYVDPS---WARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLE 298 (370)
Q Consensus 222 ~~l~~~~~~~~~---~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~ 298 (370)
+++....+++.. ...+....++|.+.+++||+.|+-+++-++..+.+.|.++...++- .+.||+.||+.+
T Consensus 260 ~e~~~~Ln~~SGLlg~sG~s~D~R~l~~~~~~gd~~A~lA~d~f~yri~k~Ig~~~a~l~g-------vDaiVFTgGIGe 332 (397)
T PRK12440 260 EKVFNSLNKKSGFLGVSGLTSDARGILEAMEEGHEGATLAFEVFTYRVAKYIASYLAALDS-------LDGIIFTGGIGE 332 (397)
T ss_pred HHHHHHHhccccceEecCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC-------CCEEEECCcccc
Confidence 444444443220 0111224578888889999999999999999999999999999972 799999999998
Q ss_pred CcccccchHHHHHHHHh
Q 017527 299 ANRRWDIGREVVKCILR 315 (370)
Q Consensus 299 ~~~~~~l~~~v~~~l~~ 315 (370)
....+ .+.+.+.+.-
T Consensus 333 n~~~v--r~~i~~~l~~ 347 (397)
T PRK12440 333 NSLPI--RREILKNLKL 347 (397)
T ss_pred CcHHH--HHHHHhhhhh
Confidence 76544 7777777654
No 69
>PRK13320 pantothenate kinase; Reviewed
Probab=96.58 E-value=0.1 Score=49.08 Aligned_cols=118 Identities=18% Similarity=0.122 Sum_probs=66.4
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEee
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgv 102 (370)
++|.||+|.|++++++++. ++++...+.+ .++....+ .++++..+ ++..+.++.
T Consensus 3 M~L~iDiGNT~ik~~~~~~----------~~~~~~~~~~--------~~~~~~~l----~~~~~~~~----~i~~i~vsS 56 (244)
T PRK13320 3 MNLVIDIGNTTTKLAVFEG----------DELLEVFVVS--------TEGVEESL----EKLLAKYP----AIRDAIVSS 56 (244)
T ss_pred eEEEEEeCCCcEEEEEEEC----------CEEEEEEEEc--------cHHHHHHH----HHHHHHCC----CCCEEEEEe
Confidence 6999999999999999986 5666544432 12222223 33444332 466666655
Q ss_pred cCCCChhhHHHHHHHHHhhCC-------CCceEEEeC--------hHHHHHHhhc--CCCCCeEEEEEcccceeeeeccC
Q 017527 103 SGVNHPTDQQRILNWLRDIFP-------GNVRLYVHN--------DALAALASGT--MGKLHGCVLIAGTGTIAYGFTED 165 (370)
Q Consensus 103 pG~~~~~~~~~l~~~L~~~f~-------~~~pV~V~N--------Da~aa~~g~~--~g~~~~v~l~~GTGi~g~gii~d 165 (370)
-.+.. ...+.+.+++.|+ ...++.+.. |=.++++++. +...+.+++-+||-+----+..|
T Consensus 57 Vvp~~---~~~~~~~~~~~~~~~~v~~~~~~gi~~~Y~~p~~lG~DR~~~~~aa~~~~~~~~~lVID~GTA~Tid~v~~~ 133 (244)
T PRK13320 57 VVPLA---EEAFSALLKLLFAVLELDSETPLPFRNDYDTPETLGADRLALCAGARYLFPGKNVLAIDAGTAITYDVLDSE 133 (244)
T ss_pred cccch---HHHHHHHHHHhCCcEEECCCCCCCCceeccChhhcchhHHHHHHHHHHhcCCCCEEEEEcCCceEEEEEcCC
Confidence 44432 3456666666542 001222222 2224444432 33357899999999854434456
Q ss_pred CceE
Q 017527 166 GRDA 169 (370)
Q Consensus 166 G~l~ 169 (370)
|+..
T Consensus 134 g~~~ 137 (244)
T PRK13320 134 GVYL 137 (244)
T ss_pred CcEE
Confidence 6654
No 70
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=96.56 E-value=0.86 Score=44.52 Aligned_cols=101 Identities=17% Similarity=0.151 Sum_probs=64.9
Q ss_pred EEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCC-CccccCHH----HHHHHHHHHHHHHHHHcCCCccCcceEE
Q 017527 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS-NHNSVGED----AARETIEKVMADALLKSGSNRSAVRAVC 99 (370)
Q Consensus 25 lGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~-n~~~~~~~----~~~~~l~~~i~~~l~~~~~~~~~v~~Ig 99 (370)
||||--...+.+++++. +++++...+.... .....-|+ .=.++|-.+++++++++++++.++.+|+
T Consensus 1 Lgiets~~~~s~al~~~---------~~~i~~~~~~~~~~~~gg~~p~~~~~~H~~~l~~~i~~~l~~~~~~~~did~Ia 71 (322)
T TIGR03722 1 LGIEGTAHTFGVGIVDE---------DGEILANVSDTYVPEKGGIHPREAAEHHAEVAPKLIKEALEEAGVSLEDIDAVA 71 (322)
T ss_pred CEEeccccceEEEEEEC---------CCeEEEEEEeecccCcCCcChhHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEE
Confidence 57888767788888885 4677765443211 11111122 3355688889999999999999999999
Q ss_pred Eee-cCCCCh-hhHHHHHHHHHhhCCCCceEEEeChHHH
Q 017527 100 LAV-SGVNHP-TDQQRILNWLRDIFPGNVRLYVHNDALA 136 (370)
Q Consensus 100 Igv-pG~~~~-~~~~~l~~~L~~~f~~~~pV~V~NDa~a 136 (370)
++. ||.... .-...+.+.|...++ +|+.-.|=-.+
T Consensus 72 vt~gPg~~~~l~vg~~~ak~la~~~~--~p~~~v~h~~a 108 (322)
T TIGR03722 72 FSQGPGLGPCLRVGATAARALALKLN--KPLVGVNHCVA 108 (322)
T ss_pred EecCCchHHhHHHHHHHHHHHHHHhC--CCeechhhHHH
Confidence 886 554321 112355777777887 78776654433
No 71
>PRK09604 UGMP family protein; Validated
Probab=96.45 E-value=1 Score=44.23 Aligned_cols=100 Identities=17% Similarity=0.175 Sum_probs=68.8
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCcc--------ccCHHHHHHHHHHHHHHHHHHcCCCccC
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHN--------SVGEDAARETIEKVMADALLKSGSNRSA 94 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~--------~~~~~~~~~~l~~~i~~~l~~~~~~~~~ 94 (370)
.+||||--...+.+++++. +++++........... ......-.+.|..++++++++++.++.+
T Consensus 2 ~iLgIdTS~~~~sval~~~---------~~~il~~~~~~~~~~~~~~~Gi~P~~a~~~H~~~l~~~i~~~L~~~~~~~~d 72 (332)
T PRK09604 2 LILGIETSCDETSVAVVDD---------GRGLLSNVVASQIDLHARYGGVVPELASRAHVENIVPLIEEALKEAGLTLED 72 (332)
T ss_pred eEEEEEccccceEEEEEEC---------CCcEEEEEEecchhcccccCCcCcchhHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 5899999877888999986 4578765542211000 0112345778899999999999999999
Q ss_pred cceEEEee-cCCCCh-hhHHHHHHHHHhhCCCCceEEEeCh
Q 017527 95 VRAVCLAV-SGVNHP-TDQQRILNWLRDIFPGNVRLYVHND 133 (370)
Q Consensus 95 v~~IgIgv-pG~~~~-~~~~~l~~~L~~~f~~~~pV~V~ND 133 (370)
+.+|+++. ||.-.. .-.....+-|...++ +|++-.|=
T Consensus 73 id~iavt~GPG~~tglrvg~~~Ak~La~~~~--ipl~~v~h 111 (332)
T PRK09604 73 IDAIAVTAGPGLVGALLVGVSFAKALALALN--KPLIGVNH 111 (332)
T ss_pred CCEEEEecCCCcHHhHHHHHHHHHHHHHHhC--CCEEeecC
Confidence 99999987 665322 112356777777887 78765554
No 72
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=96.33 E-value=0.064 Score=53.83 Aligned_cols=67 Identities=18% Similarity=0.216 Sum_probs=55.7
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHH
Q 017527 240 LVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCIL 314 (370)
Q Consensus 240 ~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~ 314 (370)
..++|.+.+++||+.|..+++-++..+.+.|.++...++ | .-+.||+.||+.+..+.+ .+.+.+.+.
T Consensus 287 D~Rel~~~~~~gd~~A~lA~~~f~yri~k~Iga~~a~L~--G----~vDaiVFTGGIGEns~~v--r~~i~~~l~ 353 (404)
T TIGR00016 287 DLRDIEDAYAEGNEQAQLAIKMYVHRIAKYIGSYIASLE--G----NLDAIVFTGGIGENAATV--RELVLEALE 353 (404)
T ss_pred CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhC--C----CCCEEEEcCccccCCHHH--HHHHHhhhh
Confidence 458888888899999999999999999999999999997 0 148999999999766554 666666664
No 73
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=96.31 E-value=0.17 Score=47.45 Aligned_cols=118 Identities=18% Similarity=0.102 Sum_probs=70.5
Q ss_pred EEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEeecC
Q 017527 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSG 104 (370)
Q Consensus 25 lGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgvpG 104 (370)
|.||+|-|++++++++. ++++...+.++... .+.++....+...+.+ ++..+.+ +.
T Consensus 2 L~iDiGNT~i~~g~~~~----------~~~~~~~r~~t~~~--~t~de~~~~l~~~~~~----------~i~~v~v--sS 57 (243)
T TIGR00671 2 LLIDVGNTRIVFALNSG----------NKVYQFWRLATNLM--KTYDEHSEFLKELFGK----------SLNKAFI--SS 57 (243)
T ss_pred EEEEECCCcEEEEEEEC----------CEEEEEEEecCCCc--cChHHHHHHHHHHHHh----------hCCEEEE--EE
Confidence 68999999999999986 56666656555433 3556655555444433 2444433 45
Q ss_pred CCChhhHHHHHHHHHhhCCCCceEE------------------EeChHHHHHHhhc--CCCCCeEEEEEcccceeeeecc
Q 017527 105 VNHPTDQQRILNWLRDIFPGNVRLY------------------VHNDALAALASGT--MGKLHGCVLIAGTGTIAYGFTE 164 (370)
Q Consensus 105 ~~~~~~~~~l~~~L~~~f~~~~pV~------------------V~NDa~aa~~g~~--~g~~~~v~l~~GTGi~g~gii~ 164 (370)
++ |+-...+++.+++.|+. .|++ +--|-.+++++++ ++ .+.+++-+||=+----+..
T Consensus 58 Vv-p~~~~~l~~~~~~~~~~-~~~~~~~~~~~gl~~~y~~p~~LG~DR~a~~~aA~~~~~-~~~lViD~GTA~Tid~v~~ 134 (243)
T TIGR00671 58 VV-PELTEAVRNMIPKIKNI-KPEIFFPLVYDGLPNLYKSPKELGIDRVANALAAIKFYG-FNVVVVDAGTALTIDLVDQ 134 (243)
T ss_pred cc-CChHHHHHHHHHHHhCC-CcEEECCCccCCcccccCChhhccHHHHHHHHHHHHHcC-CCEEEEEcCCceEEEEEcC
Confidence 55 55556777777777652 2332 2234444555543 43 4788999999874332333
Q ss_pred CCceE
Q 017527 165 DGRDA 169 (370)
Q Consensus 165 dG~l~ 169 (370)
+|+..
T Consensus 135 ~g~~~ 139 (243)
T TIGR00671 135 EGKFL 139 (243)
T ss_pred CCeEE
Confidence 66554
No 74
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=96.03 E-value=0.1 Score=52.43 Aligned_cols=139 Identities=19% Similarity=0.201 Sum_probs=85.2
Q ss_pred CeEEEEEcccceeeeeccCCceEe-eCC----CCCCcCCCCchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCCh
Q 017527 147 HGCVLIAGTGTIAYGFTEDGRDAR-AAG----AGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSP 221 (370)
Q Consensus 147 ~~v~l~~GTGi~g~gii~dG~l~~-aGg----~G~llgd~Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~ 221 (370)
+.|+..+|.|+-- .-+.+|+..- .-+ =|.+.+... |..++..+... .+.-+ -+.
T Consensus 203 ~lIvaHLG~GaSi-~Ai~~GrsvDtsmG~tpleGl~m~tRs------------------G~ldp~~v~~l-~~~~~-~s~ 261 (402)
T PRK00180 203 NLITCHLGNGASI-AAIKNGKSVDTSMGFTPLEGLVMGTRS------------------GDIDPAIIPYL-MEKLG-MSV 261 (402)
T ss_pred CEEEEEeCCCcee-eeeeCCEEEEeCCCCCcccCCCCCCCC------------------CCCChHHHHHH-HHhcC-CCH
Confidence 7899999999844 4558999753 111 222222111 11112222111 11112 144
Q ss_pred hhHHHHhccCCCh---HHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCccc
Q 017527 222 DELIGWTYVDPSW---ARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLE 298 (370)
Q Consensus 222 ~~l~~~~~~~~~~---~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~ 298 (370)
+++....+++... ..+....++|.+.+.+||+.|..+++-++..+++.|.++...|.- .-+.||+.||+.+
T Consensus 262 ~el~~~L~~~sGLlg~sG~s~D~Rel~~~~~~gd~~A~lA~d~f~yri~k~Iga~~a~L~g------~vDaiVfTGGIgE 335 (402)
T PRK00180 262 DEIDNLLNKKSGLLGLSGVSSDMRDIEAAAEEGDERAKLALDVFVYRLAKYIGSYAAALNG------RLDAIVFTAGIGE 335 (402)
T ss_pred HHHHHHHhccccceEecCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC------CCCEEEEcCcccc
Confidence 4555544432210 111224578888888999999999999999999999999999930 2689999999997
Q ss_pred CcccccchHHHHHHHH
Q 017527 299 ANRRWDIGREVVKCIL 314 (370)
Q Consensus 299 ~~~~~~l~~~v~~~l~ 314 (370)
..+.+ .+.+.+.+.
T Consensus 336 ~s~~l--r~~I~~~l~ 349 (402)
T PRK00180 336 NSALV--REKVLEGLE 349 (402)
T ss_pred CCHHH--HHHHHhhhh
Confidence 66554 666666653
No 75
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=95.95 E-value=0.029 Score=57.75 Aligned_cols=77 Identities=21% Similarity=0.243 Sum_probs=56.8
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCC------CccccCHHHHHHHHHHHHHHHHHHcCCCccC
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS------NHNSVGEDAARETIEKVMADALLKSGSNRSA 94 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~------n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~ 94 (370)
..+++|||+|.|++|++++|.. +++++..++.+.. .....+|.++++++.++|+++.+.....+..
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~~~--------~~e~l~~~~~~i~~~~~~~~~~eq~p~eI~~~V~~ci~~~~e~l~~~~~~ 76 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFNAK--------NGELLSLAQKEITQEFPKEGWVEQDPKEIWQAVCRCIEKACEKLGVLNIK 76 (516)
T ss_pred cceEEEEEcCCCceEEEEEecC--------CCccceeeeeeeeeecCCCCeEEeCHHHHHHHHHHHHHHHHHhhcccccc
Confidence 3589999999999999999931 6777766554321 1222579999999999999999887766555
Q ss_pred cce-EEEeecCC
Q 017527 95 VRA-VCLAVSGV 105 (370)
Q Consensus 95 v~~-IgIgvpG~ 105 (370)
+.+ +|+|+.+-
T Consensus 77 ~~~~~~igv~~q 88 (516)
T KOG2517|consen 77 VVGATCIGVVNQ 88 (516)
T ss_pred ccccEEEEEEec
Confidence 544 66666653
No 76
>PRK07157 acetate kinase; Provisional
Probab=95.89 E-value=0.13 Score=51.67 Aligned_cols=66 Identities=18% Similarity=0.175 Sum_probs=54.7
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHH
Q 017527 240 LVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCI 313 (370)
Q Consensus 240 ~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l 313 (370)
..++|.+.+.+||+.|.-+++-++..+++.|.++...++ | ..+.||+.||+.+....+ .+.+.+.+
T Consensus 280 D~R~l~~~~~~gd~~A~lA~d~f~yri~k~Ig~~~a~L~--G----~vDaiVFTgGIGen~~~v--r~~i~~~l 345 (400)
T PRK07157 280 DLRDVIKAAESGNKRAKFALDLYAQKIVDYLANYINKIG--K----KIDAIVFTAGVGENSAFV--RELVINKI 345 (400)
T ss_pred cHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhC--C----CCCEEEECCccccCcHHH--HHHHHhhc
Confidence 457888888999999999999999999999999999997 0 148999999999876443 56666555
No 77
>PRK12379 propionate/acetate kinase; Provisional
Probab=95.84 E-value=0.13 Score=51.63 Aligned_cols=66 Identities=18% Similarity=0.198 Sum_probs=55.6
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHH
Q 017527 240 LVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCIL 314 (370)
Q Consensus 240 ~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~ 314 (370)
..++|.+.+++||+.|..+++-++..+.+.|.++...++ .-+.||+.||+.+..... ++.+.+.+.
T Consensus 278 D~R~v~~~~~~gd~~A~lA~d~f~yri~k~IGa~~a~L~-------~vDaIVFTGGIGen~~~v--R~~i~~~L~ 343 (396)
T PRK12379 278 DLRVLEKAWHEGHERAQLAIKTFVHRIARHIAGHAASLH-------RLDGIIFTGGIGENSSLI--RRLVMEHLA 343 (396)
T ss_pred CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCCEEEECCccccCcHHH--HHHHHhhhh
Confidence 457888888999999999999999999999999999987 279999999999876553 666666654
No 78
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=95.64 E-value=0.023 Score=56.65 Aligned_cols=73 Identities=18% Similarity=0.202 Sum_probs=48.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCc
Q 017527 242 PVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRL-SLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGA 320 (370)
Q Consensus 242 ~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l-~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~~p~~ 320 (370)
.+|..+..+|-+.. .|+.-..+.++.-+.+++..+ .+ .+.|++.||+++. +-+ ...+++.+....+..
T Consensus 344 SEVIslla~G~~re-DIaAGL~~SIA~Rv~s~l~r~~~i-------~~~VvftGGvA~N-~gv--v~aLe~~L~~~~~~~ 412 (432)
T TIGR02259 344 AELRDRLALGDKRE-DILAGLHRAIILRAISIISRSGGI-------TDQFTFTGGVAKN-EAA--VKELRKLIKENYGEV 412 (432)
T ss_pred HHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHhcccCC-------CCCEEEECCcccc-HHH--HHHHHHHHccccCCC
Confidence 35777777886544 455555566666666676666 32 3589999999864 454 788888887655555
Q ss_pred eeeCC
Q 017527 321 VPIRP 325 (370)
Q Consensus 321 ~~~~p 325 (370)
++..|
T Consensus 413 ~V~Vp 417 (432)
T TIGR02259 413 QINID 417 (432)
T ss_pred eEecC
Confidence 54444
No 79
>PRK12397 propionate kinase; Reviewed
Probab=95.54 E-value=0.18 Score=50.57 Aligned_cols=66 Identities=20% Similarity=0.193 Sum_probs=55.7
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHH
Q 017527 240 LVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCIL 314 (370)
Q Consensus 240 ~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~ 314 (370)
..++|.+.+.+||+.|+.+++-++..+.+.|.++...++ .-+.||+.||+.+..... ++.+.+.+.
T Consensus 282 D~R~l~~~~~~gd~~A~lA~d~f~yri~k~IGa~~a~lg-------gvDaiVFTGGIGEns~~v--R~~ic~~L~ 347 (404)
T PRK12397 282 DYRDVEQAANTGNRQAKLALTLFAERIRATIGSYIMQMG-------GLDALVFTGGIGENSARA--RSAVCHNLQ 347 (404)
T ss_pred CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCCEEEECCchhhCCHHH--HHHHHhhhh
Confidence 458888888999999999999999999999999998876 268999999999976553 666666664
No 80
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=95.43 E-value=1.4 Score=43.43 Aligned_cols=63 Identities=10% Similarity=0.217 Sum_probs=44.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCC
Q 017527 243 VVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYP 318 (370)
Q Consensus 243 ~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~~p 318 (370)
++.+.+.+ ++.+ .|+.+...+.+.++.+..... +|+.|+|.|.++... .| .+.+++.+.+.+|
T Consensus 227 e~~~~~~e-~~~~--a~ea~~E~i~k~V~~l~~~~~-------~~~~IilSGr~~~~~-~~--~~~l~~~l~~~~~ 289 (343)
T PF07318_consen 227 EFAKRLKE-DEKC--AWEAMIESIVKAVASLLASVP-------DPDEIILSGRFSRIP-EF--RKKLEDRLEDYFP 289 (343)
T ss_pred HHHHhhhc-chhH--HHHHHHHHHHHHHHHHhcccC-------CCCEEEEeccccccH-HH--HHHHHHHHHhhcc
Confidence 44444433 3333 677777778888777766652 378899999999654 44 8899999999888
No 81
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=95.17 E-value=3.7 Score=40.63 Aligned_cols=103 Identities=16% Similarity=0.174 Sum_probs=72.4
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCcc--c----cCHHHHHHHHHHHHHHHHHHcCCCccCcc
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHN--S----VGEDAARETIEKVMADALLKSGSNRSAVR 96 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~--~----~~~~~~~~~l~~~i~~~l~~~~~~~~~v~ 96 (370)
.+||||--...+.+++++. +++++...+..-.... . .-...=.++|..+++++++++++...+|.
T Consensus 2 ~iLgIETScd~tsvAl~~~---------~~~il~~~~~sq~~~~G~GvvP~~a~r~H~~~l~~~i~~~l~~a~~~~~did 72 (345)
T PTZ00340 2 LALGIEGSANKLGVGIVTS---------DGEILSNVRETYITPPGTGFLPRETAQHHREHILSLVKEALEEAKITPSDIS 72 (345)
T ss_pred eEEEEEccchhhEEEEEEC---------CCcEEEEEEeeccccCCCCcCchHHHHHHHHHHHHHHHHHHHHcCCCHHHCC
Confidence 5899999999999999996 5778876543111110 0 01233467788899999999999999999
Q ss_pred eEEEee-cCCCC-hhhHHHHHHHHHhhCCCCceEEEeChHHH
Q 017527 97 AVCLAV-SGVNH-PTDQQRILNWLRDIFPGNVRLYVHNDALA 136 (370)
Q Consensus 97 ~IgIgv-pG~~~-~~~~~~l~~~L~~~f~~~~pV~V~NDa~a 136 (370)
+|+++. ||... -.-.....+-|...++ +|++=.|-..+
T Consensus 73 ~Iavt~GPGl~~~LrVG~~~Ak~LA~a~~--~PligV~Hleg 112 (345)
T PTZ00340 73 LICYTKGPGMGAPLSVGAVVARTLSLLWG--KPLVGVNHCVA 112 (345)
T ss_pred EEEEecCCCcHhhHHHHHHHHHHHHHHcC--CCEeecchHHH
Confidence 999876 55321 1123466777888887 89988887665
No 82
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=94.69 E-value=3.9 Score=38.53 Aligned_cols=67 Identities=12% Similarity=0.144 Sum_probs=50.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHh
Q 017527 241 VPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILR 315 (370)
Q Consensus 241 ~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~ 315 (370)
-.++.+.+.+|.. |+-.++..+...+.-|+.+.-... .-+.|+|+|++..-..++|+.+.+.+.+.+
T Consensus 231 rEEli~~~~k~ek-arlaldtlal~vamEIagL~~~~~-------~~d~v~laGsvg~~~ep~dv~~ri~~~v~~ 297 (332)
T COG4020 231 REELIQRYGKGEK-ARLALDTLALLVAMEIAGLLMVVY-------GCDGVVLAGSVGGDREPMDVLKRIKSKVFN 297 (332)
T ss_pred HHHHHHHhcCChh-hhHHHHHHHHHHHHHHhhhhceec-------CCceEEEecccccccchhhHHHHHHHHHHH
Confidence 3677888888777 888888888888888877663332 135699999999888787777777776655
No 83
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=94.67 E-value=0.2 Score=44.89 Aligned_cols=75 Identities=23% Similarity=0.290 Sum_probs=50.7
Q ss_pred EEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCC---CccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEE
Q 017527 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS---NHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCL 100 (370)
Q Consensus 24 vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~---n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgI 100 (370)
++|+|+|.|++++++.... .++.-+++.....++. +-.-.+.+.+.+.|.++++++-+.++. ++..+.+
T Consensus 1 ~~~lDIGs~~ik~vv~~~~-----~~~~~~i~g~~~~~s~gi~~G~I~d~~~~~~~I~~ai~~ae~~~~~---~i~~V~v 72 (187)
T smart00842 1 IVGLDIGTSKIKALVAEVD-----EDGEINVIGVGEVPSRGIRKGVIVDIEAAARAIREAVEEAERMAGV---KIDSVYV 72 (187)
T ss_pred CEEEEeccceEEEEEEEEc-----CCCCEEEEEEEEecCCCccCcEEECHHHHHHHHHHHHHHHHHHhCC---cccEEEE
Confidence 4799999999999998751 0012356666555432 111135678888888888887776665 4678889
Q ss_pred eecCCC
Q 017527 101 AVSGVN 106 (370)
Q Consensus 101 gvpG~~ 106 (370)
++||..
T Consensus 73 ~i~g~~ 78 (187)
T smart00842 73 GISGRH 78 (187)
T ss_pred EEcCCc
Confidence 999974
No 84
>PRK13322 pantothenate kinase; Reviewed
Probab=94.45 E-value=1.1 Score=42.13 Aligned_cols=117 Identities=15% Similarity=0.070 Sum_probs=66.0
Q ss_pred EEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEeec
Q 017527 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVS 103 (370)
Q Consensus 24 vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgvp 103 (370)
+|.||+|-|++++++++. .++++.+.+ .. .+.++....+.. + +...+..+.++
T Consensus 2 ~L~IDiGNT~iK~~l~~~---------~~~~~~~~~---~~---~t~~~~~~~l~~----~------~~~~i~~v~vs-- 54 (246)
T PRK13322 2 ILELDCGNSRLKWRVIDN---------GGQIIEHGA---HL---DSPAELLLGLAN----L------ASLAPTRCRIV-- 54 (246)
T ss_pred EEEEEeCCCcEEEEEEcC---------CCchhhhcc---cc---CCHHHHHHHHHh----C------CccCCCEEEEE--
Confidence 789999999999999985 355443222 11 134444443321 1 22246665554
Q ss_pred CCCChhhHHHHHHHHHhhCCCCceEEEeChHH-------------------HHHHhhc--CCCCCeEEEEEcccceeeee
Q 017527 104 GVNHPTDQQRILNWLRDIFPGNVRLYVHNDAL-------------------AALASGT--MGKLHGCVLIAGTGTIAYGF 162 (370)
Q Consensus 104 G~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~-------------------aa~~g~~--~g~~~~v~l~~GTGi~g~gi 162 (370)
.++.++....+++.+++.|+. .|.++..+.. ++++++. ++ .+.+++-+||=+---.+
T Consensus 55 SV~p~~~~~~l~~~l~~~~~~-~~~~v~~~~~~~gv~~~y~~p~~LG~DR~~~~~aA~~~~~-~~~lViD~GTA~TiD~v 132 (246)
T PRK13322 55 SVLSEEETARLVAILEKRLGI-PVVFAKVAAELAGVRNGYEDPEQLGIDRWLALLGAFHLAK-NACLVIDCGTAVTIDLV 132 (246)
T ss_pred eCCCHHHHHHHHHHHHHHhCC-CeEEEecCCcCCCceecCCChhhccHHHHHHHHHHHHHcC-CCEEEEEcCCeeEEEEE
Confidence 555445566888888887762 2444544433 2333332 32 35778888888743323
Q ss_pred ccCCceE
Q 017527 163 TEDGRDA 169 (370)
Q Consensus 163 i~dG~l~ 169 (370)
..+|+..
T Consensus 133 ~~~g~~~ 139 (246)
T PRK13322 133 DADGQHL 139 (246)
T ss_pred cCCCcEe
Confidence 3466554
No 85
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=94.43 E-value=0.21 Score=48.80 Aligned_cols=125 Identities=16% Similarity=0.122 Sum_probs=76.8
Q ss_pred EEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEeecC
Q 017527 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSG 104 (370)
Q Consensus 25 lGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgvpG 104 (370)
||+||||-|+|+++++. +|.+.......++-.. +.+. |.+++.+++++.+ ....++|.+.|
T Consensus 1 ~G~DiGGA~~K~a~~~~---------~g~~~~v~~~~~plW~--~~~~----L~~~l~~~~~~~~----~~~~~avtMTg 61 (318)
T TIGR03123 1 LGIDIGGANTKAAELDE---------DGRIKEVHQLYCPLWK--GNDK----LAETLKEISQDLS----SADNVAVTMTG 61 (318)
T ss_pred CccccccceeeeEEecC---------CCceeEEEEecCcccC--CchH----HHHHHHHHHHhcC----ccceEEEEeeh
Confidence 68999999999999987 6888776666666442 5544 3444444444332 12567888888
Q ss_pred C-C----ChhhHH-HHHHHHHhhCCCCceEE-EeChHHHH------------HHhh------c--CCCCCeEEEEEcccc
Q 017527 105 V-N----HPTDQQ-RILNWLRDIFPGNVRLY-VHNDALAA------------LASG------T--MGKLHGCVLIAGTGT 157 (370)
Q Consensus 105 ~-~----~~~~~~-~l~~~L~~~f~~~~pV~-V~NDa~aa------------~~g~------~--~g~~~~v~l~~GTGi 157 (370)
= . +..+++ .+.+.+++.|+ .|++ +.+|.... +.++ + ....|.+++=+|.=+
T Consensus 62 ELaD~f~~r~~GV~~i~~~~~~~~~--~~~~i~~s~GG~~s~~~a~~~pv~~~~Sg~~a~A~~la~~~~~~I~~DmGGTT 139 (318)
T TIGR03123 62 ELADCFEDKAEGVEFILAAVESAFG--SPVSVFASDGGFVSAEEALTNPLDVAAANWLATAQLIAKRIPECLFVDMGSTT 139 (318)
T ss_pred hhhhhhcCHHHHHHHHHHHHHHhcC--CCeEEEecCCCCccHHHHHHhHHHHHHhhHHHHHHHHHhcCCCEEEEEcCccc
Confidence 4 2 233333 68899999997 4554 46665210 0111 1 124678888777333
Q ss_pred eeeeeccCCceEe
Q 017527 158 IAYGFTEDGRDAR 170 (370)
Q Consensus 158 ~g~gii~dG~l~~ 170 (370)
-=...+.||++..
T Consensus 140 tDi~~i~~G~p~~ 152 (318)
T TIGR03123 140 TDIIPIIDGEVAA 152 (318)
T ss_pred eeeEEecCCEeee
Confidence 2345677998754
No 86
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=94.28 E-value=5.7 Score=38.71 Aligned_cols=68 Identities=15% Similarity=0.194 Sum_probs=44.5
Q ss_pred eEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhcCC---CCCeEEEEEcccceeeeeccCC
Q 017527 97 AVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMG---KLHGCVLIAGTGTIAYGFTEDG 166 (370)
Q Consensus 97 ~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~~g---~~~~v~l~~GTGi~g~gii~dG 166 (370)
.+.+++|-..+......+.+.++. ++. ..+.+.|+..+|+++.... ....+++-+|.|.--..++..+
T Consensus 100 ~~vitvP~~~~~~~r~~~~~~~~~-ag~-~~~~li~ep~aaa~~~g~~~~~~~~~lVvDiG~gttdvs~v~~~ 170 (333)
T TIGR00904 100 RIVICVPSGITPVERRAVKESALS-AGA-REVYLIEEPMAAAIGAGLPVEEPTGSMVVDIGGGTTEVAVISLG 170 (333)
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHH-cCC-CeEEEecCHHHHHHhcCCcccCCceEEEEEcCCCeEEEEEEEeC
Confidence 578899987665555556565544 442 3588999999998853221 2356788899887655565333
No 87
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=94.21 E-value=0.18 Score=42.98 Aligned_cols=90 Identities=17% Similarity=0.240 Sum_probs=55.2
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEee
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgv 102 (370)
.+||+|.|..+|=+++.|. .+.+ +.......+. +....++.|.+++++ .++..|-||+
T Consensus 2 riL~lD~G~kriGiAvsd~---------~~~~-a~pl~~i~~~---~~~~~~~~l~~li~~---------~~i~~iVvGl 59 (135)
T PF03652_consen 2 RILGLDYGTKRIGIAVSDP---------LGII-ASPLETIPRR---NREKDIEELKKLIEE---------YQIDGIVVGL 59 (135)
T ss_dssp EEEEEEECSSEEEEEEEET---------TTSS-EEEEEEEEEC---CCCCCHHHHHHHHHH---------CCECEEEEEE
T ss_pred eEEEEEeCCCeEEEEEecC---------CCCe-EeeeEEEECC---CCchHHHHHHHHHHH---------hCCCEEEEeC
Confidence 5899999999999999998 4443 3221111111 112334445444443 4578888999
Q ss_pred cCCC----Chhh--HHHHHHHHHhhCCCCceEEEeChHH
Q 017527 103 SGVN----HPTD--QQRILNWLRDIFPGNVRLYVHNDAL 135 (370)
Q Consensus 103 pG~~----~~~~--~~~l~~~L~~~f~~~~pV~V~NDa~ 135 (370)
|=-. .+.. -..+.+.|++.|+. +||+..+.-.
T Consensus 60 P~~~~G~~~~~~~~v~~f~~~L~~~~~~-ipV~~~DEr~ 97 (135)
T PF03652_consen 60 PLNMDGSESEQARRVRKFAEELKKRFPG-IPVILVDERL 97 (135)
T ss_dssp EBBCTSSC-CCHHHHHHHHHHHHHHH-T-SEEEEEECSC
T ss_pred CcccCCCccHHHHHHHHHHHHHHHhcCC-CcEEEECCCh
Confidence 8432 2222 24788999999932 8998877543
No 88
>PRK07058 acetate kinase; Provisional
Probab=94.08 E-value=0.12 Score=51.66 Aligned_cols=62 Identities=13% Similarity=0.060 Sum_probs=50.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHH
Q 017527 241 VPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCIL 314 (370)
Q Consensus 241 ~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~ 314 (370)
.++|. +++|+.|+.+++-++..+.+.|.++...++- -+.||+.||+.+....+ .+.+.+.+.
T Consensus 283 ~R~l~---~~~d~~A~lA~d~f~yri~k~IGa~~a~Lg~-------vDaiVfTGGIgEns~~v--r~~i~~~l~ 344 (396)
T PRK07058 283 TRDLL---ASDAPEAREALDLFALRIAGEIARLAATLGG-------LDAVVFTAGIGEHQPAI--RAAVCERLA 344 (396)
T ss_pred HHHHh---hcCCHhHHHHHHHHHHHHHHHHHHHHHHhCC-------CCEEEECCccccCcHHH--HHHHHhhhh
Confidence 45663 3469999999999999999999999999872 78999999999766554 666666664
No 89
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=93.76 E-value=2.3 Score=40.14 Aligned_cols=122 Identities=21% Similarity=0.171 Sum_probs=72.8
Q ss_pred EEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEeec
Q 017527 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVS 103 (370)
Q Consensus 24 vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgvp 103 (370)
.|.+|+|-|++++++.+. +++....+..+... ...++ +...+..+.+.+ ...++.++.| +
T Consensus 2 ~L~iDiGNT~~~~a~~~~----------~~~~~~~r~~t~~~--~~~de----l~~~~~~l~~~~--~~~~~~~~~i--s 61 (251)
T COG1521 2 LLLIDIGNTRIVFALYEG----------GKVVQTWRLATEDL--LTEDE----LGLQLHNLFDGN--SVRDIDGIVI--S 61 (251)
T ss_pred eEEEEeCCCeEEEEEecC----------CeEEEEEeeccccc--ccHHH----HHHHHHHHhccc--ccccccccee--e
Confidence 689999999999999986 77777776655332 23444 333444444433 3345665554 5
Q ss_pred CCCChhhHHHHHHHHHhhCCCCceEEEeC-------------------hHHHHHHhhc--CCCCCeEEEEEcccceeeee
Q 017527 104 GVNHPTDQQRILNWLRDIFPGNVRLYVHN-------------------DALAALASGT--MGKLHGCVLIAGTGTIAYGF 162 (370)
Q Consensus 104 G~~~~~~~~~l~~~L~~~f~~~~pV~V~N-------------------Da~aa~~g~~--~g~~~~v~l~~GTGi~g~gi 162 (370)
.++ |.-...++..+++.|.- .|.++.+ |-.+++++.. +|. ..++|-+||-+---.+
T Consensus 62 svv-p~~~~~~~~~~~~~f~~-~~~~~~~~~~~~g~~~~~~~p~elG~DR~~n~vaA~~~~~~-~~vVVD~GTA~Tid~v 138 (251)
T COG1521 62 SVV-PPLGIFLEAVLKEYFKV-KPLVVISPKQLLGIRVLYDNPEELGADRIANAVAAYHKYGK-AVVVVDFGTATTIDLV 138 (251)
T ss_pred ccC-ccHHHHHHHHHHHHhcc-CceeeechhhccCCcccCCChhhhcHHHHHHHHHHHHHcCC-cEEEEEcCCeEEEEEE
Confidence 555 66666777777777763 3433322 3334444432 443 4788999998754444
Q ss_pred ccCCce
Q 017527 163 TEDGRD 168 (370)
Q Consensus 163 i~dG~l 168 (370)
..+|+.
T Consensus 139 ~~~~~~ 144 (251)
T COG1521 139 DEGGRY 144 (251)
T ss_pred cCCCcE
Confidence 334434
No 90
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=93.70 E-value=7.5 Score=38.04 Aligned_cols=71 Identities=13% Similarity=0.176 Sum_probs=49.1
Q ss_pred eEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhcC---CCCCeEEEEEcccceeeeeccCCceE
Q 017527 97 AVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTM---GKLHGCVLIAGTGTIAYGFTEDGRDA 169 (370)
Q Consensus 97 ~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~~---g~~~~v~l~~GTGi~g~gii~dG~l~ 169 (370)
.+-|++|...+...+..+.+.++. ++. ..+.+.|+..||+++... .....+++-+|.|+--..++..|...
T Consensus 100 ~vvitvP~~~~~~~R~~l~~a~~~-ag~-~~~~li~ep~Aaa~~~g~~~~~~~~~lvvDiG~gtt~v~vi~~~~~~ 173 (335)
T PRK13929 100 NVVVCTPSGSTAVERRAISDAVKN-CGA-KNVHLIEEPVAAAIGADLPVDEPVANVVVDIGGGTTEVAIISFGGVV 173 (335)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHH-cCC-CeeEeecCHHHHHHhcCCCcCCCceEEEEEeCCCeEEEEEEEeCCEE
Confidence 577899987776667778776654 442 358899999999886421 22456788899998666666455544
No 91
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=93.70 E-value=2.7 Score=38.19 Aligned_cols=120 Identities=21% Similarity=0.176 Sum_probs=63.7
Q ss_pred EEEEEcCccceEEEEEeCCCCCCCCCCCCCeEE-EEEe--cCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEE
Q 017527 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLA-RAAA--GCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCL 100 (370)
Q Consensus 24 vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~-~~~~--~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgI 100 (370)
+|.||+|-|++++++++. .++.. ..+. .+... ...++.... +.+.+...+ +.. +
T Consensus 1 ~L~iDiGNT~ik~~~~~~----------~~~~~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~-----~~~--v 57 (206)
T PF03309_consen 1 ILLIDIGNTRIKWALFDG----------DKLIDPSGRISHSTALD--SSSDELLEL----LESLLPQPK-----IDA--V 57 (206)
T ss_dssp EEEEEE-SSEEEEEEEET----------TEEEE-EEEE-EEECTT--SSHHHHHHH----HHHHHHCTT-----CGE--E
T ss_pred CEEEEECCCeEEEEEEEC----------CEEEeeeeEEEeccccc--ccHHHHHHH----HHHHhcccc-----CCc--E
Confidence 578999999999999987 34443 2222 22221 234454444 444444322 223 3
Q ss_pred eecCCCChhhHHHHHHHHHhhCCCCceEEEeC-------------------hHHHHHHhhc--CCCCCeEEEEEccccee
Q 017527 101 AVSGVNHPTDQQRILNWLRDIFPGNVRLYVHN-------------------DALAALASGT--MGKLHGCVLIAGTGTIA 159 (370)
Q Consensus 101 gvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~N-------------------Da~aa~~g~~--~g~~~~v~l~~GTGi~g 159 (370)
-++.++. .....+.+.+.+.++ .|.++.+ |=.++++++. + ..+.+++-+||=+--
T Consensus 58 ~isSV~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~y~~p~~LG~DR~~~~~aa~~~~-~~~~lViD~GTA~Ti 133 (206)
T PF03309_consen 58 IISSVVP-EATEQLLEALLKRFG--RPHFVKSSASKLGLKNAYDNPSQLGVDRWAAAIAARKLY-GQPCLVIDAGTATTI 133 (206)
T ss_dssp EEEESSG-HHHHHHHHHHHHHCS----EEES-TTSCCSSEESSSSGGGS-HHHHHHHHHHHHHH-TSSEEEEEESSEEEE
T ss_pred EEEEcCC-HHHHHHHHHHHHHhC--CCEEEEccccccCccccCCChhHhhHHHHHHHHHHHHhc-CCCEEEEEcCCeEEE
Confidence 3445553 344455666666554 3444331 3344555442 3 468999999999854
Q ss_pred eeeccCCceEe
Q 017527 160 YGFTEDGRDAR 170 (370)
Q Consensus 160 ~gii~dG~l~~ 170 (370)
-.+..+|+...
T Consensus 134 d~v~~~g~~~G 144 (206)
T PF03309_consen 134 DVVDADGQHLG 144 (206)
T ss_dssp EEEETTSEEEE
T ss_pred EEEcCCCeEEE
Confidence 43334666543
No 92
>COG0282 ackA Acetate kinase [Energy production and conversion]
Probab=93.64 E-value=0.31 Score=48.36 Aligned_cols=138 Identities=16% Similarity=0.143 Sum_probs=84.7
Q ss_pred CeEEEEEcccceeeeeccCCceEe-eCCCCCCcCCCCchHHHHHHHHHHHHHHHcCCCCC---chhHHHHHHHcCCCChh
Q 017527 147 HGCVLIAGTGTIAYGFTEDGRDAR-AAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPD---TMLTSNILSTLELSSPD 222 (370)
Q Consensus 147 ~~v~l~~GTGi~g~gii~dG~l~~-aGg~G~llgd~Gs~~~iG~~~~~~~~~~~dg~~~~---~~l~~~~~~~~~~~s~~ 222 (370)
+.|...+|.|..-+ -+.+|+..- .=|+-.+-| .-+ |+++. .++...+.+..+ -+.+
T Consensus 201 ~~I~~HLGNGASic-AiknGkSvDTSMGfTPLeG-----l~M-------------GTRsGdiDP~ii~~l~~~~~-~s~~ 260 (396)
T COG0282 201 NLITCHLGNGASIC-AIKNGKSVDTSMGFTPLEG-----LMM-------------GTRSGDIDPGIILYLMEQEG-MSAE 260 (396)
T ss_pred CEEEEEecCchhhh-hhhCCeeeccCCCCCcccc-----eec-------------cCCCCCCChHHHHHHHHhcC-CCHH
Confidence 67888899997444 458998743 111111100 000 11111 123334444444 2455
Q ss_pred hHHHHhccCC---ChHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccC
Q 017527 223 ELIGWTYVDP---SWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEA 299 (370)
Q Consensus 223 ~l~~~~~~~~---~~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~ 299 (370)
++....++.. .-..+....++|.+++.+|++ |+-.++-+...+++.|......++- .+.||+.||+.+.
T Consensus 261 ~i~~~LNkkSGllGlSg~ssD~R~l~~~~~~g~~-A~lA~~~f~~Ri~kyIg~y~a~L~g-------lDaiVFTaGIGEN 332 (396)
T COG0282 261 EIDTLLNKKSGLLGLSGLSSDMRDLEEAAAEGNE-AKLALDMFVYRIAKYIGSYAAALGG-------LDALVFTAGIGEN 332 (396)
T ss_pred HHHHHHhhhccccccccccchHHHHHHHhccCch-HHHHHHHHHHHHHHHHHHHHHHhCC-------CCEEEEeCccccC
Confidence 5554444221 011123346889999999977 9999999999999999999999983 7999999999997
Q ss_pred cccccchHHHHHHHH
Q 017527 300 NRRWDIGREVVKCIL 314 (370)
Q Consensus 300 ~~~~~l~~~v~~~l~ 314 (370)
.... ++.+.+.+.
T Consensus 333 s~~i--R~~v~~~L~ 345 (396)
T COG0282 333 SALV--RELVCEGLA 345 (396)
T ss_pred cHHH--HHHHHhhhh
Confidence 6554 666666663
No 93
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=93.57 E-value=0.24 Score=50.03 Aligned_cols=71 Identities=23% Similarity=0.220 Sum_probs=46.8
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCcc-------------ccC-H----HHHHHHHHHHHHHH
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHN-------------SVG-E----DAARETIEKVMADA 84 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~-------------~~~-~----~~~~~~l~~~i~~~ 84 (370)
|-++||+|+|.+.+.++|+. +|+++.......+... +.+ . ..+++.|.++++++
T Consensus 2 ~GiAvDiGTTti~~~L~dl~--------~G~~l~~~s~~NpQ~~~GaDViSRI~~a~~~~~~~~L~~~i~~~i~~li~~l 73 (412)
T PF14574_consen 2 YGIAVDIGTTTIAAYLVDLE--------TGEVLATASFLNPQRAYGADVISRISYALSPEGLEELQRLIRETINELIEEL 73 (412)
T ss_dssp EEEEEEE-SSEEEEEEEETT--------T--EEEEEEEE-GGGGT-SSHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcchhheeeEEEECC--------CCCEEEeecccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999983 6999988765322210 001 1 23567777888888
Q ss_pred HHHcCCCccCcceEEEe
Q 017527 85 LLKSGSNRSAVRAVCLA 101 (370)
Q Consensus 85 l~~~~~~~~~v~~IgIg 101 (370)
+.++++++++|..+.|.
T Consensus 74 ~~~~gi~~~~I~~i~i~ 90 (412)
T PF14574_consen 74 LEKAGISPEDIYEIVIV 90 (412)
T ss_dssp HHHHT--GGGEEEEEEE
T ss_pred HHHcCCCHHHeEEEEEE
Confidence 88889999999877664
No 94
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=93.42 E-value=8.2 Score=37.60 Aligned_cols=101 Identities=18% Similarity=0.144 Sum_probs=68.4
Q ss_pred EEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCC----cc----ccCHHHHHHHHHHHHHHHHHHcCCCccCc
Q 017527 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSN----HN----SVGEDAARETIEKVMADALLKSGSNRSAV 95 (370)
Q Consensus 24 vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n----~~----~~~~~~~~~~l~~~i~~~l~~~~~~~~~v 95 (370)
+|+||--...+.+++++. +.+++........+ .. ......-.+.|..+|++++++++...++|
T Consensus 1 iLaIdTs~~~~sval~~~---------~~~il~~~~~~~~~~~~~~gGi~p~~~~~~H~~~l~~~i~~~l~~~~~~~~~i 71 (314)
T TIGR03723 1 ILGIETSCDETAVAIVDD---------GKGLLSNIVASQIELHARYGGVVPELASRAHLEAIPPLIEEALAEAGLTLSDI 71 (314)
T ss_pred CEEEECcccceEEEEEEC---------CceEEEEEEeehhhhccCcCCcCcchhHHHHHHHHHHHHHHHHHHcCCCHHHC
Confidence 589999999999999986 33477664432100 00 01134456778899999999999999999
Q ss_pred ceEEEeecCCCChh---hHHHHHHHHHhhCCCCceEEEeChHHH
Q 017527 96 RAVCLAVSGVNHPT---DQQRILNWLRDIFPGNVRLYVHNDALA 136 (370)
Q Consensus 96 ~~IgIgvpG~~~~~---~~~~l~~~L~~~f~~~~pV~V~NDa~a 136 (370)
.+|+++. ||-... -.....+-|...++ +|++-.|--.+
T Consensus 72 d~iav~~-GPGsftglrig~~~Ak~la~~~~--~p~~~v~h~~a 112 (314)
T TIGR03723 72 DAIAVTA-GPGLIGALLVGVSFAKALALALN--KPLIGVNHLEG 112 (314)
T ss_pred CEEEEec-CCChHHhHHHHHHHHHHHHHHhC--CCEEecccHHH
Confidence 9999886 443221 13456677777776 89887766554
No 95
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=93.29 E-value=0.6 Score=47.37 Aligned_cols=76 Identities=16% Similarity=0.288 Sum_probs=51.8
Q ss_pred cEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCC---CccccCHHHHHHHHHHHHHHHHHHcCCCccCcceE
Q 017527 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS---NHNSVGEDAARETIEKVMADALLKSGSNRSAVRAV 98 (370)
Q Consensus 22 ~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~---n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~I 98 (370)
.+++|+|||.|++++++.... .++.-+++.....++. +-.-.+.+++.+.|.++++++-..++. ++..|
T Consensus 8 ~~i~~lDIGsskv~~vv~~~~-----~~~~~~i~g~~~~~s~gi~~G~I~d~~~~~~aI~~av~~ae~~~g~---~i~~v 79 (420)
T PRK09472 8 KLVVGLEIGTAKVAALVGEVL-----PDGMVNIIGVGSCPSRGMDKGGVNDLESVVKCVQRAIDQAELMADC---QISSV 79 (420)
T ss_pred CEEEEEEcccceEEEEEEEEc-----CCCCEEEEEEEEccCCCccCCEEEcHHHHHHHHHHHHHHHHHHhCC---cccEE
Confidence 489999999999999877641 0112356666665532 111235778888888888887766664 57778
Q ss_pred EEeecCC
Q 017527 99 CLAVSGV 105 (370)
Q Consensus 99 gIgvpG~ 105 (370)
.+++||.
T Consensus 80 ~v~i~g~ 86 (420)
T PRK09472 80 YLALSGK 86 (420)
T ss_pred EEEecCc
Confidence 8888887
No 96
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=93.27 E-value=1.6 Score=43.20 Aligned_cols=93 Identities=20% Similarity=0.281 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHH-cCCCccCcceEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhcCCCCCeEEEE
Q 017527 74 RETIEKVMADALLK-SGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLI 152 (370)
Q Consensus 74 ~~~l~~~i~~~l~~-~~~~~~~v~~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~~g~~~~v~l~ 152 (370)
.+.++.+++.++.+ .+..+.+ ..+-+..|-...+.....+.+.|-+.|+. ..+++.+++.+++++. |..++++|-
T Consensus 74 ~~~~e~i~~~~~~~~l~~~~~~-~~vll~~p~~~~~~~r~~~~e~lfE~~~~-~~v~~~~~~~~a~~~~--g~~~~lVVD 149 (373)
T smart00268 74 WDDMEKIWDYTFFNELRVEPEE-HPVLLTEPPMNPKSNREKILEIMFETFNF-PALYIAIQAVLSLYAS--GRTTGLVID 149 (373)
T ss_pred HHHHHHHHHHHHhhhcCCCCcc-CeeEEecCCCCCHHHHHHHHHHhhccCCC-CeEEEeccHHHHHHhC--CCCEEEEEe
Confidence 44555666666652 3443322 34667788777666777888888888872 2488999999988753 567899999
Q ss_pred EcccceeeeeccCCceEe
Q 017527 153 AGTGTIAYGFTEDGRDAR 170 (370)
Q Consensus 153 ~GTGi~g~gii~dG~l~~ 170 (370)
+|.+..-...+.||.+..
T Consensus 150 iG~~~t~v~pv~~G~~~~ 167 (373)
T smart00268 150 SGDGVTHVVPVVDGYVLP 167 (373)
T ss_pred cCCCcceEEEEECCEEch
Confidence 999976666677898753
No 97
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=93.20 E-value=9.3 Score=37.61 Aligned_cols=122 Identities=17% Similarity=0.219 Sum_probs=78.1
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEec----CCCccccCHH----HHHHHHHHHHHHHHHHcCCCccC
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG----CSNHNSVGED----AARETIEKVMADALLKSGSNRSA 94 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~----~~n~~~~~~~----~~~~~l~~~i~~~l~~~~~~~~~ 94 (370)
.+|||+.--..|-+++++. +. +++..... ......+-|+ .=.++|..+|++++++++++.++
T Consensus 2 ~iLGIEtScDeT~vaIv~~---------~~-ilan~~~sq~~~h~~~GGVvPe~Asr~H~e~i~~li~~al~eA~~~~~d 71 (342)
T COG0533 2 IILGIETSCDETGVAIVDE---------EK-ILANVVASQIELHARYGGVVPELASRHHVENIPPLIEEALAEAGVSLED 71 (342)
T ss_pred eEEEEEcccccceeEEEec---------cC-hhheehhhcccccCCCCCcCccHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 5899999999999999986 23 55433221 1111111133 33677888999999999999889
Q ss_pred cceEEEee-cCCCCh-hhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhc--CC-CCCeEEEEEccc
Q 017527 95 VRAVCLAV-SGVNHP-TDQQRILNWLRDIFPGNVRLYVHNDALAALASGT--MG-KLHGCVLIAGTG 156 (370)
Q Consensus 95 v~~IgIgv-pG~~~~-~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~--~g-~~~~v~l~~GTG 156 (370)
|.+|++.. ||..-. .-.....+.|.-.++ .|++=.|-..+=+.+.. .+ ..+.+.+.+..|
T Consensus 72 ID~IA~T~gPGL~gaL~VG~~~Ak~LA~a~~--kPli~VnH~~gHi~a~~l~~~~~~p~v~LlVSGG 136 (342)
T COG0533 72 IDAIAVTAGPGLGGALLVGATAAKALALALN--KPLIPVNHLEGHIEAARLETGLAFPPVALLVSGG 136 (342)
T ss_pred CCEEEEecCCCchhHHHHHHHHHHHHHHHhC--CCEeecchHHHHHHHHHhccCCCCCcEEEEEecC
Confidence 99999864 555421 123466777777776 89998888776443332 22 445665554434
No 98
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=93.04 E-value=3 Score=41.21 Aligned_cols=53 Identities=13% Similarity=0.082 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHh
Q 017527 253 EVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILR 315 (370)
Q Consensus 253 ~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~ 315 (370)
-.|..++.-.+.-+|+.........+. ..||++|.....++.. +..+..++.-
T Consensus 262 Dia~sll~mv~~nIg~la~l~A~~~~~--------~~I~f~G~~~~~~~~~--~~~l~~a~~~ 314 (341)
T PF03630_consen 262 DIAKSLLNMVSNNIGQLAYLHAKIHGV--------KRIVFGGSFIRNNPIT--MRTLSYAINF 314 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT----------EEEEESGGGTSSCHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC--------CEEEEEeccccCCHHH--HHHHHHHHHH
Confidence 457788888888888888888888885 8999999999877654 5666656544
No 99
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=92.96 E-value=0.56 Score=46.58 Aligned_cols=72 Identities=25% Similarity=0.358 Sum_probs=47.5
Q ss_pred EEEEEcCccceEEEEEeCCCCCCCCCCCC--CeEEEEEecCC---CccccCHHHHHHHHHHHHHHHHHHcCCCccCcceE
Q 017527 24 ILGLDGGTTSTVCICMPVISMSDSLPDPL--PVLARAAAGCS---NHNSVGEDAARETIEKVMADALLKSGSNRSAVRAV 98 (370)
Q Consensus 24 vlGVDiGgT~i~~~l~d~~~~~~~~~~~g--~il~~~~~~~~---n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~I 98 (370)
++|+|||.+++++++..... ++ +++.....++. +-.-.+.+.+.+.|.++++++-+.++. ++..+
T Consensus 2 ~~~lDIGs~~ik~vv~~~~~-------~~~~~i~~~~~~~~~gi~~G~I~d~~~~~~~i~~al~~~e~~~~~---~i~~v 71 (371)
T TIGR01174 2 IVGLDIGTSKICAIVAEVLE-------DGELNIIGVGTHPSRGIKKGVINDIEAAVGSIQRAIEAAELMAGC---EIRSV 71 (371)
T ss_pred EEEEEeccceEEEEEEEEcC-------CCCEEEEEEEEecCCCccCcEEEcHHHHHHHHHHHHHHHHHHhCC---cccEE
Confidence 68999999999999886510 23 45555554432 111234677777777777777666665 45667
Q ss_pred EEeecCC
Q 017527 99 CLAVSGV 105 (370)
Q Consensus 99 gIgvpG~ 105 (370)
.+++||.
T Consensus 72 ~~~v~g~ 78 (371)
T TIGR01174 72 IVSISGA 78 (371)
T ss_pred EEEEccc
Confidence 7888774
No 100
>PRK13331 pantothenate kinase; Reviewed
Probab=92.91 E-value=4.8 Score=38.02 Aligned_cols=115 Identities=15% Similarity=-0.029 Sum_probs=66.0
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEee
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgv 102 (370)
.+|.||+|-|++++++++. .+++...+ +... ...+ +..++...+....++..+.++
T Consensus 8 ~~L~iDiGNT~~~~g~f~~----------~~~~~~~r--t~~~--~t~d---------~~~~l~~~~~~~~~i~~~iis- 63 (251)
T PRK13331 8 EWLALMIGNSRLHWGYFSG----------ETLVKTWD--TPHL--DESI---------IQLLLPGQTLLIVAPNPLVIA- 63 (251)
T ss_pred cEEEEEeCCCcEEEEEEEC----------CEEEEEEE--cCCc--chHH---------HHHHHHHcCCCccccCEEEEE-
Confidence 6899999999999999986 45655433 2221 1222 555666666666677766544
Q ss_pred cCCCChhhHHHHHHHHHhhCCCCceE------------EEeChHHHHHHhhc--CCCCCeEEEEEcccceeeeeccCCce
Q 017527 103 SGVNHPTDQQRILNWLRDIFPGNVRL------------YVHNDALAALASGT--MGKLHGCVLIAGTGTIAYGFTEDGRD 168 (370)
Q Consensus 103 pG~~~~~~~~~l~~~L~~~f~~~~pV------------~V~NDa~aa~~g~~--~g~~~~v~l~~GTGi~g~gii~dG~l 168 (370)
.++. .-...+ ++.|+. .|+ .+--|=.++++++. ++ .+.+++-+||=+---.+..+|+.
T Consensus 64 -SVVP-~~~~~~----~~~~~~-~~~~v~~~~l~~~yp~lG~DR~~~~vaA~~~~~-~~~iVID~GTA~T~D~V~~~g~~ 135 (251)
T PRK13331 64 -SVVP-QQTELW----QTYPNV-RLITLDDIPLNNLYPTLGIDRALALWGAGQTYG-FPCLVIDAGTALTFTGVDSDRTL 135 (251)
T ss_pred -ecCc-cHHHHH----HHhcCC-ceEEecCCCCccCCCCccHHHHHHHHHHHHHhC-CCEEEEECCCceEEEEEcCCCcE
Confidence 3432 222222 333331 232 34445555555543 43 57888999998743333356665
Q ss_pred E
Q 017527 169 A 169 (370)
Q Consensus 169 ~ 169 (370)
.
T Consensus 136 ~ 136 (251)
T PRK13331 136 V 136 (251)
T ss_pred E
Confidence 4
No 101
>PLN02666 5-oxoprolinase
Probab=92.81 E-value=0.46 Score=54.46 Aligned_cols=55 Identities=18% Similarity=0.113 Sum_probs=35.3
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHH
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADAL 85 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l 85 (370)
..|.||||+|||.|.++++|. ++.-+...+.+++.+. ...+.+++-|.+++++++
T Consensus 8 ~~~rigIDvGGTFTD~v~~~~---------~~~~~~~~K~~sttp~-d~~~gv~~Gi~~~l~~~~ 62 (1275)
T PLN02666 8 RKFRFCIDRGGTFTDVYAEVP---------GGSDFRVLKLLSVDPA-NYDDAPREGIRRILEEVT 62 (1275)
T ss_pred CCEEEEEECCcCCEeEEEEec---------CCCeEEEEEeCCCCCC-ChhHHHHHHHHHHHHHHh
Confidence 469999999999999999986 4442333444542222 123456666766666553
No 102
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=92.71 E-value=11 Score=36.91 Aligned_cols=72 Identities=13% Similarity=0.146 Sum_probs=48.2
Q ss_pred eEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhcCC---CCCeEEEEEcccceeeeeccCCceEe
Q 017527 97 AVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMG---KLHGCVLIAGTGTIAYGFTEDGRDAR 170 (370)
Q Consensus 97 ~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~~g---~~~~v~l~~GTGi~g~gii~dG~l~~ 170 (370)
.+.|++|...+......+.+.++. ++. -.+.+.|+..||+++.... ....+++=+|.|+--..++..|.+..
T Consensus 97 ~~vitvP~~~~~~~r~~~~~a~~~-ag~-~~~~li~ep~Aaa~~~g~~~~~~~~~lVvDiGggttdvsvv~~g~~~~ 171 (336)
T PRK13928 97 RIMICIPTGITSVEKRAVREAAEQ-AGA-KKVYLIEEPLAAAIGAGLDISQPSGNMVVDIGGGTTDIAVLSLGGIVT 171 (336)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHH-cCC-CceEecccHHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEEeCCEEE
Confidence 577888887665555566666654 442 3578999999998864221 13456777898887777777776654
No 103
>PLN02902 pantothenate kinase
Probab=92.61 E-value=19 Score=39.69 Aligned_cols=53 Identities=8% Similarity=0.031 Sum_probs=42.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHH
Q 017527 252 DEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCIL 314 (370)
Q Consensus 252 D~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~ 314 (370)
.-.|..++.-...-+|+.........+. ..||++|.....++.- ++.+..++.
T Consensus 320 eDiarSLL~mIs~NIGqiA~L~A~~~~i--------krIvF~G~fIr~h~~t--m~~ls~Ai~ 372 (876)
T PLN02902 320 EDISLSLLRMISYNIGQISYLNALRFGL--------KRIFFGGFFIRGHAYT--MDTISFAVH 372 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC--------CEEEEecceecCCcch--HHHHHHHHH
Confidence 3567788888888888887777777775 8899999999888765 777877775
No 104
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=92.38 E-value=0.62 Score=43.94 Aligned_cols=87 Identities=17% Similarity=0.197 Sum_probs=51.2
Q ss_pred cEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEe
Q 017527 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA 101 (370)
Q Consensus 22 ~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIg 101 (370)
..++|+||||.+++++..|. +-..+.....|-. . ..+. |.+.+.++..+ .++..+|+-
T Consensus 3 ~kilGiDIGGAntk~a~~DG---------~~~~~d~~YlPMW-k---~k~r----L~~~Lkei~~k-----~~~~~vgvv 60 (330)
T COG1548 3 MKILGIDIGGANTKIASSDG---------DNYKIDHIYLPMW-K---KKDR----LEETLKEIVHK-----DNVDYVGVV 60 (330)
T ss_pred ceEEEeeccCccchhhhccC---------CeeeeeEEEeccc-c---chhH----HHHHHHHHhcc-----CCcceeEEE
Confidence 36899999999999999765 2222333443322 1 2344 44444444332 245566666
Q ss_pred ecCC-CC----hh-hHHHHHHHHHhhCCCCceEEEeC
Q 017527 102 VSGV-NH----PT-DQQRILNWLRDIFPGNVRLYVHN 132 (370)
Q Consensus 102 vpG~-~~----~~-~~~~l~~~L~~~f~~~~pV~V~N 132 (370)
+.|- .| .. .-..+.+..++.|+ +||++.|
T Consensus 61 MTaELaD~f~tk~eGVe~Ii~~v~~Af~--~pv~~v~ 95 (330)
T COG1548 61 MTAELADAFKTKAEGVEDIIDTVEKAFN--CPVYVVD 95 (330)
T ss_pred eeHHHHHHhhhHHhHHHHHHHHHHHhcC--CceEEEe
Confidence 6663 22 11 22468889999998 8977543
No 105
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=92.34 E-value=1.1 Score=38.41 Aligned_cols=90 Identities=17% Similarity=0.162 Sum_probs=56.6
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEE-EecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEe
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARA-AAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA 101 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~-~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIg 101 (370)
.+||+|.|.-++=+++.|. .+.+..-. +....+ .....+.|.+ ++++ .++..|-||
T Consensus 5 ~iLalD~G~kriGvAv~d~---------~~~~a~pl~~i~~~~-----~~~~~~~l~~----~i~~-----~~i~~iVvG 61 (138)
T PRK00109 5 RILGLDVGTKRIGVAVSDP---------LGGTAQPLETIKRNN-----GTPDWDRLEK----LIKE-----WQPDGLVVG 61 (138)
T ss_pred cEEEEEeCCCEEEEEEecC---------CCCEEcCEEEEEcCC-----CchHHHHHHH----HHHH-----hCCCEEEEe
Confidence 5999999999999999987 45443222 111111 1122444444 4443 357789999
Q ss_pred ecCCCC----hhh--HHHHHHHHHhhCCCCceEEEeChHHHH
Q 017527 102 VSGVNH----PTD--QQRILNWLRDIFPGNVRLYVHNDALAA 137 (370)
Q Consensus 102 vpG~~~----~~~--~~~l~~~L~~~f~~~~pV~V~NDa~aa 137 (370)
+|=-.+ +.. -..+.+.|++.|+ +||+..+.-...
T Consensus 62 lP~~~~G~~~~~~~~v~~f~~~L~~~~~--~~v~~~DEr~TT 101 (138)
T PRK00109 62 LPLNMDGTEGPRTERARKFANRLEGRFG--LPVVLVDERLST 101 (138)
T ss_pred ccCCCCCCcCHHHHHHHHHHHHHHHHhC--CCEEEEcCCcCH
Confidence 986432 211 1378888988887 899888776543
No 106
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=92.30 E-value=1.2 Score=38.73 Aligned_cols=99 Identities=13% Similarity=0.203 Sum_probs=48.0
Q ss_pred cEEEEEEcCcc----ceEEEEEeCCCCCCCCCCCCCeEEEEEe-cCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcc
Q 017527 22 EVILGLDGGTT----STVCICMPVISMSDSLPDPLPVLARAAA-GCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVR 96 (370)
Q Consensus 22 ~~vlGVDiGgT----~i~~~l~d~~~~~~~~~~~g~il~~~~~-~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~ 96 (370)
..|+++.-|.. .+.++++|. +|+++...+. ...... ...++..++|.+.|.+ . +..
T Consensus 5 ~rVla~~~g~g~~~~~~~~v~ld~---------~G~v~d~~~~~~~~~~~-~~~~~~~~~l~~~i~~----~-----kP~ 65 (150)
T PF14639_consen 5 PRVLALSWGSGDGDDAVFCVVLDE---------NGEVLDHLKLVYNERDR-ERKEEDMERLKKFIEK----H-----KPD 65 (150)
T ss_dssp --EEEEE-TT--TTS-EEEEEE-T---------TS-EEEEEEE-S-TT-S-S-SHHHHHHHHHHHHH----H-------S
T ss_pred CEEEEEEcCCCCCCCCEEEEEECC---------CCcEEEEEEEcCCccch-HHHHHHHHHHHHHHHH----c-----CCe
Confidence 36888888844 478999999 8999998876 222211 2234555555555543 2 345
Q ss_pred eEEEeecCCCChhhHHHHHHHHHhhC-----CCCceEEEeChHHHHHHh
Q 017527 97 AVCLAVSGVNHPTDQQRILNWLRDIF-----PGNVRLYVHNDALAALAS 140 (370)
Q Consensus 97 ~IgIgvpG~~~~~~~~~l~~~L~~~f-----~~~~pV~V~NDa~aa~~g 140 (370)
.|+||-.+.....-...+++.+++.- + .+||.+.||..+-++.
T Consensus 66 vI~v~g~~~~s~~l~~~v~~~v~~~~~~~~~~-~i~V~~v~~~~A~lY~ 113 (150)
T PF14639_consen 66 VIAVGGNSRESRKLYDDVRDIVEELDEDEQMP-PIPVVIVDDEVARLYS 113 (150)
T ss_dssp EEEE--SSTHHHHHHHHHHHHHHHTTB-TTS--B--EEE---TTHHHHH
T ss_pred EEEEcCCChhHHHHHHHHHHHHHHhhhcccCC-CceEEEECcHHHHHHh
Confidence 56664222222222346667666543 2 3789999998887663
No 107
>PLN02920 pantothenate kinase 1
Probab=92.24 E-value=14 Score=37.19 Aligned_cols=74 Identities=11% Similarity=0.007 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHh-hCCCceeeCCCCC---
Q 017527 253 EVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILR-DYPGAVPIRPKVC--- 328 (370)
Q Consensus 253 ~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~-~~p~~~~~~p~~~--- 328 (370)
-.|..++.-.+.-+|+.........+. ..||++|+.....+.. ++.+...+.- ..-..+...|..+
T Consensus 272 Dia~SLL~mVs~nIgqiA~L~A~~~~i--------k~Ivf~G~fir~~~~t--m~~ls~a~~fwS~g~~ka~FLrHeGYl 341 (398)
T PLN02920 272 DVARSLLRMISNNIGQISYLNALRFGL--------KRIFFGGFFIRGHSYT--MDTISVAVHFWSKGEAKAMFLRHEGFL 341 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC--------CEEEEEeecccCcHHH--HHHHHHHHHHhccCceeEEEecCcchh
Confidence 457778888888888777777777774 8999999977665443 5544333321 1133444445544
Q ss_pred -cccccccc
Q 017527 329 -IWPHWHSC 336 (370)
Q Consensus 329 -~~~~~~~~ 336 (370)
+++.+++.
T Consensus 342 GAlGAfl~~ 350 (398)
T PLN02920 342 GALGAFMSY 350 (398)
T ss_pred HHHHHHHhc
Confidence 44444443
No 108
>TIGR03725 bact_YeaZ universal bacterial protein YeaZ. This family describes a protein family, YeaZ, that appears to be universal in bacteria, but whose function is unknown. This family is related to the gcp (glycoprotease) protein family, also universal in bacteria and unknown in function. In Gram-positive lineages, members of these two related families often belong to the same operon, along with the ribosomal-protein-alanine acetyltransferase gene. Members of this family may occur as fusions with gcp or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI.
Probab=91.90 E-value=3.1 Score=37.73 Aligned_cols=96 Identities=18% Similarity=0.140 Sum_probs=69.0
Q ss_pred EEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEeec
Q 017527 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVS 103 (370)
Q Consensus 24 vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgvp 103 (370)
+|++|--+..+.+++.+. ++++.+..... ...--+.|..+|++++++++.+.+++..|+++.
T Consensus 1 iLaidTs~~~~sval~~~----------~~~~~~~~~~~-------~~~h~~~l~~~i~~~l~~~~~~~~~i~~iav~~- 62 (202)
T TIGR03725 1 ILAIDTSTEALSVALLDD----------GEILAERSEEA-------GRNHSEILLPMIEELLAEAGLSLQDLDAIAVGV- 62 (202)
T ss_pred CEEEECCCcceEEEEEEC----------CEEEEEEeehh-------hHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEec-
Confidence 478999999999999986 67777654322 233467788889999999999999999988875
Q ss_pred CCCChhh---HHHHHHHHHhhCCCCceEEEeChHHHHHH
Q 017527 104 GVNHPTD---QQRILNWLRDIFPGNVRLYVHNDALAALA 139 (370)
Q Consensus 104 G~~~~~~---~~~l~~~L~~~f~~~~pV~V~NDa~aa~~ 139 (370)
|+.+-.. .....+-|...++ +|++-.+--.+.+.
T Consensus 63 GPGSfTGlRig~~~akgla~~~~--~p~~~vssL~~lA~ 99 (202)
T TIGR03725 63 GPGSFTGLRIGLATAKGLALALG--IPLVGVSSLEALAA 99 (202)
T ss_pred CCChHHhHHHHHHHHHHHHHHhC--CCEEecCHHHHHHh
Confidence 6654322 2345666766676 89887776665443
No 109
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=91.61 E-value=0.16 Score=51.89 Aligned_cols=70 Identities=13% Similarity=0.054 Sum_probs=44.3
Q ss_pred EEEEcCccceEEEEEeCCCCCCCCCCCCCeE-EEEEecCC------CccccCHHHHHHHHHHHHHHHHHHcCCCccCcce
Q 017527 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVL-ARAAAGCS------NHNSVGEDAARETIEKVMADALLKSGSNRSAVRA 97 (370)
Q Consensus 25 lGVDiGgT~i~~~l~d~~~~~~~~~~~g~il-~~~~~~~~------n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~ 97 (370)
++||+|+|++|+++++. ++..++++ .....+.+ .....+++.+.+.+.++++++... ..+|.+
T Consensus 1 ~aiD~Gtt~~k~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~----~~~i~~ 70 (454)
T TIGR02627 1 VAVDLGASSGRVMLASY------ENECQKLTLEEIHRFKNGLVSQNGHECWDIDALEQEIRLGLNKVDAE----GIAPDS 70 (454)
T ss_pred CcEeccCCchheEEEEE------cCCCceEEEEEEEeCCCCCEeECCEEEEehHHHHHHHHHHHHHHhcc----CCCceE
Confidence 58999999999999998 11114665 23322211 111135677888888888887652 235777
Q ss_pred EEEeecC
Q 017527 98 VCLAVSG 104 (370)
Q Consensus 98 IgIgvpG 104 (370)
|||+.-|
T Consensus 71 Igis~q~ 77 (454)
T TIGR02627 71 IGIDTWG 77 (454)
T ss_pred EEEeccc
Confidence 7776544
No 110
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=91.47 E-value=23 Score=38.19 Aligned_cols=73 Identities=18% Similarity=0.016 Sum_probs=44.7
Q ss_pred CcceEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhcCC---CCCeEEEEEcccceeeeecc--CCce
Q 017527 94 AVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMG---KLHGCVLIAGTGTIAYGFTE--DGRD 168 (370)
Q Consensus 94 ~v~~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~~g---~~~~v~l~~GTGi~g~gii~--dG~l 168 (370)
.+..+-|+||-.-+...+..+++..+.. +. -.+.+.|+..||+++-... ....+++=+|.|.--..++. +|.+
T Consensus 159 ~v~~aVITVPayF~~~qR~at~~Aa~~A-Gl-~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~~~~g~~ 236 (657)
T PTZ00186 159 KVSNAVVTCPAYFNDAQRQATKDAGTIA-GL-NVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVF 236 (657)
T ss_pred ccceEEEEECCCCChHHHHHHHHHHHHc-CC-CeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEEEeCCEE
Confidence 5777889999875544444555544433 32 2467999999998853211 24566777888865444433 5543
No 111
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=90.95 E-value=3.7 Score=40.59 Aligned_cols=93 Identities=20% Similarity=0.263 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHc-CCCccCcceEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhcCCCCCeEEEE
Q 017527 74 RETIEKVMADALLKS-GSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLI 152 (370)
Q Consensus 74 ~~~l~~~i~~~l~~~-~~~~~~v~~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~~g~~~~v~l~ 152 (370)
.+.++.+++.++.+. ..++ .-..+.+..|....+.....+.+.|-+.|+. ..|++.++..+++++. |..++++|-
T Consensus 74 ~~~~e~~~~~~~~~~l~~~~-~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~-~~v~~~~~~~~a~~~~--g~~~~lVVD 149 (371)
T cd00012 74 WDDMEKIWDHLFFNELKVNP-EEHPVLLTEPPLNPKSNREKTTEIMFETFNV-PALYVAIQAVLSLYAS--GRTTGLVVD 149 (371)
T ss_pred HHHHHHHHHHHHHHhcCCCC-CCCceEEecCCCCCHHHHHHHHHHhhccCCC-CEEEEechHHHHHHhc--CCCeEEEEE
Confidence 344455555555432 2332 2345778888887766777888888888872 3589999999998853 557899999
Q ss_pred EcccceeeeeccCCceEe
Q 017527 153 AGTGTIAYGFTEDGRDAR 170 (370)
Q Consensus 153 ~GTGi~g~gii~dG~l~~ 170 (370)
+|.+..-...+.||.+..
T Consensus 150 iG~~~t~i~pv~~G~~~~ 167 (371)
T cd00012 150 SGDGVTHVVPVYDGYVLP 167 (371)
T ss_pred CCCCeeEEEEEECCEEch
Confidence 999975555678888753
No 112
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=90.69 E-value=1.5 Score=44.43 Aligned_cols=73 Identities=25% Similarity=0.337 Sum_probs=51.7
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCC--CeEEEEEecCC---CccccCHHHHHHHHHHHHHHHHHHcCCCccCcce
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPL--PVLARAAAGCS---NHNSVGEDAARETIEKVMADALLKSGSNRSAVRA 97 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g--~il~~~~~~~~---n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~ 97 (370)
++.|+|+|.+|+++.+.... + +| +++.....++. .-.-.+.+.+.+.|.++++++-..++. ++..
T Consensus 7 ~iv~LDIGTskV~~lVge~~------~-~g~i~iig~g~~~SrGik~G~I~di~~~~~sI~~av~~AE~mag~---~i~~ 76 (418)
T COG0849 7 LIVGLDIGTSKVKALVGELR------P-DGRLNIIGVGSHPSRGIKKGVIVDLDAAAQSIKKAVEAAERMAGC---EIKS 76 (418)
T ss_pred eEEEEEccCcEEEEEEEEEc------C-CCeEEEEeeecccCcccccceEEcHHHHHHHHHHHHHHHHHhcCC---Ccce
Confidence 89999999999999888761 1 22 33333222221 111135788999999999999888886 5778
Q ss_pred EEEeecCC
Q 017527 98 VCLAVSGV 105 (370)
Q Consensus 98 IgIgvpG~ 105 (370)
+.++++|-
T Consensus 77 v~vs~sG~ 84 (418)
T COG0849 77 VIVSLSGN 84 (418)
T ss_pred EEEEeccc
Confidence 99999994
No 113
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=90.59 E-value=6.2 Score=38.73 Aligned_cols=95 Identities=16% Similarity=0.183 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCccCcceEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhcC---CCC
Q 017527 70 EDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTM---GKL 146 (370)
Q Consensus 70 ~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~~---g~~ 146 (370)
.+.+..-|...++++.... ...-..+.+++|.-.+.-.+..+.+.+.+. +- ..|++.....+|++|... ...
T Consensus 71 ~~~~~~~l~~~l~k~~~~~---~~~~p~vvi~vP~~~T~verrA~~~a~~~a-Ga-~~V~li~ep~AaAiGaGl~i~~~~ 145 (326)
T PF06723_consen 71 YEAAEEMLRYFLKKALGRR---SFFRPRVVICVPSGITEVERRALIDAARQA-GA-RKVYLIEEPIAAAIGAGLDIFEPR 145 (326)
T ss_dssp HHHHHHHHHHHHHHHHTSS----SS--EEEEEE-SS--HHHHHHHHHHHHHT-T--SEEEEEEHHHHHHHHTT--TTSSS
T ss_pred HHHHHHHHHHHHHHhccCC---CCCCCeEEEEeCCCCCHHHHHHHHHHHHHc-CC-CEEEEecchHHHHhcCCCCCCCCC
Confidence 4444444444444444311 112335789999988877778888888764 32 689999999999997532 223
Q ss_pred CeEEEEEcccceeeeeccCCceE
Q 017527 147 HGCVLIAGTGTIAYGFTEDGRDA 169 (370)
Q Consensus 147 ~~v~l~~GTGi~g~gii~dG~l~ 169 (370)
..+++-+|.|+-=.+++..|.+.
T Consensus 146 g~miVDIG~GtTdiavislggiv 168 (326)
T PF06723_consen 146 GSMIVDIGGGTTDIAVISLGGIV 168 (326)
T ss_dssp -EEEEEE-SS-EEEEEEETTEEE
T ss_pred ceEEEEECCCeEEEEEEECCCEE
Confidence 44677788887666676666653
No 114
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=90.53 E-value=0.91 Score=48.80 Aligned_cols=50 Identities=16% Similarity=0.072 Sum_probs=35.9
Q ss_pred cEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHH
Q 017527 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMAD 83 (370)
Q Consensus 22 ~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~ 83 (370)
.+.||||+|||.|.+++++. ++.++...+..+. +. .+..+..++.+.+..
T Consensus 2 ~~~iGID~GGTfTDaV~~~~---------~~g~~~~~K~lTt-P~--~~~~~~~~~~~~~~~ 51 (674)
T COG0145 2 MLRIGIDVGGTFTDAVLLDE---------DGGVLATIKVLTT-PD--LPSGIVNAGIRLALE 51 (674)
T ss_pred ceEEEEEcCCCcEeEEEEeC---------CCCEEEEEEccCC-CC--chhhHHHHHHHHHhh
Confidence 48999999999999999998 4547777777665 43 455555555555444
No 115
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=90.37 E-value=18 Score=35.02 Aligned_cols=75 Identities=12% Similarity=0.109 Sum_probs=50.8
Q ss_pred CcceEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhcCC---CCCeEEEEEcccceeeeeccCCceEe
Q 017527 94 AVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMG---KLHGCVLIAGTGTIAYGFTEDGRDAR 170 (370)
Q Consensus 94 ~v~~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~~g---~~~~v~l~~GTGi~g~gii~dG~l~~ 170 (370)
....+-+++|...+......+.+.++ .++. -.+++.|...||+++.... ...++++-+|.|+--..++.+|.+..
T Consensus 99 ~~~~vvit~P~~~~~~~r~~~~~~~e-~~g~-~~~~lv~ep~AAa~a~g~~~~~~~~~lVvDiG~gttdvs~v~~g~~~~ 176 (335)
T PRK13930 99 RKPRIVICVPSGITEVERRAVREAAE-HAGA-REVYLIEEPMAAAIGAGLPVTEPVGNMVVDIGGGTTEVAVISLGGIVY 176 (335)
T ss_pred CCCcEEEEECCCCCHHHHHHHHHHHH-HcCC-CeEEecccHHHHHHhcCCCcCCCCceEEEEeCCCeEEEEEEEeCCEEe
Confidence 35567899998776655566666655 4552 3578999999988764221 13467888998886666667777654
No 116
>KOG2707 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=90.32 E-value=20 Score=35.47 Aligned_cols=101 Identities=18% Similarity=0.144 Sum_probs=69.8
Q ss_pred EEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEE---------ecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccC
Q 017527 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAA---------AGCSNHNSVGEDAARETIEKVMADALLKSGSNRSA 94 (370)
Q Consensus 24 vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~---------~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~ 94 (370)
+|||.-.=.-|.++++|. .+++++... .+.-.+. .-...=.++|..++++++++++..+++
T Consensus 34 VLgIETSCDDTavaVVd~---------~~~~~~~~i~~~t~~~~~yGGI~P~-~a~~~Hr~ni~~~iqral~aa~~~p~d 103 (405)
T KOG2707|consen 34 VLGIETSCDDTAVAVVDE---------FSHVLSSEIYSRTEIHRQYGGIIPT-VAQLLHRENIPRLIQRALDAAGLSPKD 103 (405)
T ss_pred eeeEecccCcceeeeecc---------cccccchhhhhhhHHHHhhCCCCCh-HHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 999999999999999988 566655421 1111221 123445678999999999999999999
Q ss_pred cceEEEee-cCCCC-hhhHHHHHHHHHhhCCCCceEEEeChHHH
Q 017527 95 VRAVCLAV-SGVNH-PTDQQRILNWLRDIFPGNVRLYVHNDALA 136 (370)
Q Consensus 95 v~~IgIgv-pG~~~-~~~~~~l~~~L~~~f~~~~pV~V~NDa~a 136 (370)
+.+|++.+ ||..- -.-+..+..-|...+. .|..=..-..+
T Consensus 104 ldaIAVT~gPGl~lsL~vGl~fA~glA~~l~--kPlipVHHMeA 145 (405)
T KOG2707|consen 104 LDAIAVTRGPGLPLSLKVGLSFAKGLAVKLQ--KPLIPVHHMEA 145 (405)
T ss_pred ceeEEEecCCCceeehhhhHHHHHHHHHhcc--CCccchhHHHH
Confidence 99999876 66532 2345666777777776 56655555554
No 117
>PF03727 Hexokinase_2: Hexokinase; InterPro: IPR022673 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF00349 from PFAM. Some members of the family have two copies of each of these domains. This entry represents the more C-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4DHY_A 3ID8_A 4DCH_A 3FGU_A 3QIC_A 3A0I_X 3VEY_A 3IDH_A 3VEV_A 3VF6_A ....
Probab=89.87 E-value=0.39 Score=45.04 Aligned_cols=86 Identities=12% Similarity=0.170 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceeeCCCCCcccc
Q 017527 253 EVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVCIWPH 332 (370)
Q Consensus 253 ~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~~p~~~~~~p~~~~~~~ 332 (370)
..|..+.+|+++..|-+++.+++.+.-.......+..|-+-|++.+.++.| .+.+++.+++..|.. -..+.+
T Consensus 152 ~I~~aV~~RAA~L~Aa~iaail~~~~~~~~~~~~~v~VavDGSv~~~~p~f--~~~l~~~l~~L~~~~------~~~v~~ 223 (243)
T PF03727_consen 152 RICEAVSTRAARLVAAAIAAILNKIRENKGRPRREVTVAVDGSVYEKYPNF--RERLQEALDELLPEE------GCKVEF 223 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTCSSEEEEEEEESHHHHHSTTH--HHHHHHHHHHHSTT-------CEEEEE
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhccccccCCceEEEEeCcceeeCHHH--HHHHHHHHHHhcccc------cceEEE
Confidence 457789999999999999999999531111122356799999999999998 999999999977663 112555
Q ss_pred ccccccccccccccee
Q 017527 333 WHSCDQASANCCGAAL 348 (370)
Q Consensus 333 ~~~~~~~~~~~~~~~~ 348 (370)
..++++. ..|||-+
T Consensus 224 ~~~~dgs--g~GAAi~ 237 (243)
T PF03727_consen 224 VLSEDGS--GVGAAIA 237 (243)
T ss_dssp EE-SSTH--HHHHHHH
T ss_pred EEecCch--HHHHHHH
Confidence 5555555 7777644
No 118
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=89.41 E-value=9.4 Score=36.79 Aligned_cols=136 Identities=14% Similarity=0.072 Sum_probs=80.6
Q ss_pred EEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecC-----CCccccCHHHHHHHHHHHHHHHHHHcC-CCccCcce
Q 017527 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGC-----SNHNSVGEDAARETIEKVMADALLKSG-SNRSAVRA 97 (370)
Q Consensus 24 vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~-----~n~~~~~~~~~~~~l~~~i~~~l~~~~-~~~~~v~~ 97 (370)
+-.||+|..++|+.+++..+ ...+++.+.+.+. ......=.++.++.+.++++++.+... ...+ .-
T Consensus 2 ~AvIDiGSNsirl~I~~~~~------~~~~~l~~~~~~vrL~~~~~~~g~i~~e~i~~~~~~l~~f~~~~~~~~v~--~i 73 (300)
T TIGR03706 2 IAAIDIGSNSVRLVIARGVE------GSLQVLFNEKEMVRLGEGLDSTGRLSEEAIERALEALKRFAELLRGFPVD--EV 73 (300)
T ss_pred eEEEEecCCeeeEEEEEecC------CcEEEhhheeeeeecCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHhCCCC--eE
Confidence 46799999999999998620 0112322222111 001100124556666777776654432 1112 23
Q ss_pred EEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHH---hhc--CCCCCeEEEEEcccceeeeeccCCceE
Q 017527 98 VCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALA---SGT--MGKLHGCVLIAGTGTIAYGFTEDGRDA 169 (370)
Q Consensus 98 IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~---g~~--~g~~~~v~l~~GTGi~g~gii~dG~l~ 169 (370)
.+++.+.+=+..+...+.+.++++++ .++.|-+...=|.+ +.. ....+.+++-+|.|+.-..+..++++.
T Consensus 74 ~~vaTsa~R~A~N~~~~~~~i~~~tg--i~i~visg~eEa~l~~~gv~~~~~~~~~~v~DiGGGSte~~~~~~~~~~ 148 (300)
T TIGR03706 74 RAVATAALRDAKNGPEFLREAEAILG--LPIEVISGEEEARLIYLGVAHTLPIADGLVVDIGGGSTELILGKDFEPG 148 (300)
T ss_pred EEEEcHHHHcCCCHHHHHHHHHHHHC--CCeEEeChHHHHHHHHHHHHhCCCCCCcEEEEecCCeEEEEEecCCCEe
Confidence 46777777555677889999999998 77877776654322 221 223456888899998776665566653
No 119
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=89.40 E-value=0.48 Score=39.33 Aligned_cols=93 Identities=15% Similarity=0.100 Sum_probs=43.7
Q ss_pred EEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccc--cCHHHHH--HHHHHHHHHHHHHcCCC-ccCcceE
Q 017527 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNS--VGEDAAR--ETIEKVMADALLKSGSN-RSAVRAV 98 (370)
Q Consensus 24 vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~--~~~~~~~--~~l~~~i~~~l~~~~~~-~~~v~~I 98 (370)
+++||+|++++++++... +........+.....+ .....+. +.+...++..++++... ..++..+
T Consensus 1 i~~iDiGs~~~~~~i~~~----------~~~~~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~a~~~AE~~~k~~i~~v 70 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAED----------GSDGYIRVLGVGEVPSKGIKGGHITDIEDISKAIKIAIEEAERLAKCEIGSV 70 (120)
T ss_dssp EEEEEE-SSSEEEEEEET----------TEEEEEEEES----------HHHHH--HHHHHHHT--HHHHHHH-HHHH--S
T ss_pred CEEEEcCCCcEEEEEEEe----------CCCCcEEEEEEecccccccCCCEEEEHHHHHHHHHHHHHHHHHHhCCeeeEE
Confidence 578999999999999987 3333333333220001 1133444 44444444444433211 1234444
Q ss_pred EEeecCCCChhhHHHHHHHHHhhCCCCceEEEeC
Q 017527 99 CLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHN 132 (370)
Q Consensus 99 gIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~N 132 (370)
-++++ .+.-..+.+.+++.++ .|+.+.+
T Consensus 71 ~v~~g----~s~l~~i~~~~~~~~~--~~v~v~~ 98 (120)
T PF14450_consen 71 YVSIG----GSKLQNIEELIEKCGG--MPVRVAG 98 (120)
T ss_dssp --TTG----GGGSTTHHHHHHHHHT--S-EEE--
T ss_pred EecCc----hhHHHhHHHHHHHhCC--CcEEEcc
Confidence 44441 1222468888888887 7888888
No 120
>PRK13328 pantothenate kinase; Reviewed
Probab=88.94 E-value=17 Score=34.37 Aligned_cols=119 Identities=24% Similarity=0.207 Sum_probs=64.8
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEee
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgv 102 (370)
++|-||+|-|.+|+++++. .++++....... . ....... .+ .+. ..+..|. +
T Consensus 2 M~LliDiGNTriKwa~~~~---------~~~~~~~~~~~~--~---~~~~~~~-------~~-~~~----~~~~~i~--v 53 (255)
T PRK13328 2 MILLIDAGNSRIKWAWADA---------GRPWVHSGAFAH--G---LDAALAP-------DW-SAL----PAPRGAW--I 53 (255)
T ss_pred cEEEEEeCccceeEEEEcC---------CCceeecchhcc--c---chHHHHH-------HH-HhC----CCCCeEE--E
Confidence 3899999999999999986 335544322111 0 0111111 11 111 1244443 4
Q ss_pred cCCCChhhHHHHHHHHHhhCCCCceEEEe-Ch------------------HHHHHHhhc--CCCCCeEEEEEcccceeee
Q 017527 103 SGVNHPTDQQRILNWLRDIFPGNVRLYVH-ND------------------ALAALASGT--MGKLHGCVLIAGTGTIAYG 161 (370)
Q Consensus 103 pG~~~~~~~~~l~~~L~~~f~~~~pV~V~-ND------------------a~aa~~g~~--~g~~~~v~l~~GTGi~g~g 161 (370)
+.++.|+....+.+++++.|+.-.|.++. .+ =.++++++. +..++.+++-+||=+----
T Consensus 54 sSV~~p~~~~~l~~~l~~~~~~~~~~~v~~~~~~~gl~~~Y~~p~~LG~DR~~a~vaA~~~~~~~~~lViD~GTA~TiD~ 133 (255)
T PRK13328 54 SNVAGPAVAARLDALLAARWPGLPVTWVRSRAAQCGVRNGYREPAQLGSDRWAGLIGARAAFPGEHLLIATFGTATTLDA 133 (255)
T ss_pred EecCChhHHHHHHHHHHHHhCCCCeEEEecCccCCCceeCCCChhhccHHHHHHHHHHHHhcCCCCEEEEEcCCceEEEE
Confidence 56666777788899999888510244443 12 122344432 3335778888888874332
Q ss_pred eccCCceE
Q 017527 162 FTEDGRDA 169 (370)
Q Consensus 162 ii~dG~l~ 169 (370)
+..+|+..
T Consensus 134 v~~~g~~l 141 (255)
T PRK13328 134 LRADGRFA 141 (255)
T ss_pred EcCCCcEe
Confidence 33456543
No 121
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=88.90 E-value=4.1 Score=35.04 Aligned_cols=90 Identities=17% Similarity=0.188 Sum_probs=56.7
Q ss_pred cEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHH-HHHHHHHHHHHHHHHHcCCCccCcceEEE
Q 017527 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGED-AARETIEKVMADALLKSGSNRSAVRAVCL 100 (370)
Q Consensus 22 ~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~-~~~~~l~~~i~~~l~~~~~~~~~v~~IgI 100 (370)
..+||+|.|.-+|=+++.|. .+ .+++.. .+....... ..+++|.+++++ .++..|-|
T Consensus 2 ~~ilalD~G~KrIGvA~sd~---------~~-~~A~pl---~~i~~~~~~~~~~~~l~~li~~---------~~~~~vVV 59 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDI---------LG-SLASPL---ETIKRKNGKPQDFNALLKLVKE---------YQVDTVVV 59 (141)
T ss_pred ceEEEEecCCceEEEEEecC---------CC-ccccch---hhheeccccHhhHHHHHHHHHH---------hCCCEEEE
Confidence 37999999999999999987 23 233221 111111111 345555555544 35778889
Q ss_pred eecCCCC----hhh--HHHHHHHHHhhCCCCceEEEeChHH
Q 017527 101 AVSGVNH----PTD--QQRILNWLRDIFPGNVRLYVHNDAL 135 (370)
Q Consensus 101 gvpG~~~----~~~--~~~l~~~L~~~f~~~~pV~V~NDa~ 135 (370)
|+|=--+ +.. -..+.+.|+++|+ +||.+...-.
T Consensus 60 GlP~~m~g~~~~~~~~~~~f~~~L~~r~~--lpv~l~DERl 98 (141)
T COG0816 60 GLPLNMDGTEGPRAELARKFAERLKKRFN--LPVVLWDERL 98 (141)
T ss_pred ecCcCCCCCcchhHHHHHHHHHHHHHhcC--CCEEEEcCcc
Confidence 9987422 211 2468899999998 8988776544
No 122
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=88.20 E-value=2.9 Score=35.37 Aligned_cols=89 Identities=20% Similarity=0.211 Sum_probs=53.7
Q ss_pred EEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEeecC
Q 017527 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSG 104 (370)
Q Consensus 25 lGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgvpG 104 (370)
||+|.|..++=+++.|. .+.+ ++....-... .....++.|.+ ++++ .++..|-||+|=
T Consensus 1 laiD~G~kriGvA~~d~---------~~~~-a~pl~~i~~~---~~~~~~~~l~~----~i~~-----~~~~~iVvGlP~ 58 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDI---------TGWT-AQGIPTIKAQ---DGEPDWSRIEE----LLKE-----WTPDKIVVGLPL 58 (130)
T ss_pred CeEccCCCeEEEEEECC---------CCCE-EeceEEEEec---CCcHHHHHHHH----HHHH-----cCCCEEEEeccC
Confidence 68999999999998887 4533 2211100000 11233344444 4444 346788899886
Q ss_pred CCC----hhhH--HHHHHHHHhhCCCCceEEEeChHHHH
Q 017527 105 VNH----PTDQ--QRILNWLRDIFPGNVRLYVHNDALAA 137 (370)
Q Consensus 105 ~~~----~~~~--~~l~~~L~~~f~~~~pV~V~NDa~aa 137 (370)
-.+ +... ..+.+.|++.|+ +||...+.-...
T Consensus 59 ~~dG~~~~~a~~v~~f~~~L~~~~~--~~v~~~DEr~TT 95 (130)
T TIGR00250 59 NMDGTEGPLTERAQKFANRLEGRFG--VPVVLWDERLST 95 (130)
T ss_pred CCCcCcCHHHHHHHHHHHHHHHHhC--CCEEEEcCCcCH
Confidence 532 2111 378888988887 899888776543
No 123
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=87.49 E-value=18 Score=35.90 Aligned_cols=92 Identities=17% Similarity=0.192 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHH-cCCCccCcceEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhcCCCCCeEEEEE
Q 017527 75 ETIEKVMADALLK-SGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIA 153 (370)
Q Consensus 75 ~~l~~~i~~~l~~-~~~~~~~v~~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~~g~~~~v~l~~ 153 (370)
+.++.+++.++.. ...++ .-..|-+..|-...+.....+.+.|=+.|+. --+++.+++.+++.+. |..++++|-+
T Consensus 74 ~~~e~i~~~~~~~~l~~~~-~~~~vll~~~~~~~~~~r~~l~e~lfE~~~~-~~v~~~~~~~~a~~~~--g~~tglVVD~ 149 (393)
T PF00022_consen 74 DALEEIWDYIFSNLLKVDP-SDHPVLLTEPPFNPRSQREKLAEILFEKFGV-PSVYFIPSPLLALYAS--GRTTGLVVDI 149 (393)
T ss_dssp HHHHHHHHHHHHTTT-SSG-GGSEEEEEESTT--HHHHHHHHHHHHHTS---SEEEEEEHHHHHHHHT--TBSSEEEEEE
T ss_pred ccccccccccccccccccc-ccceeeeeccccCCchhhhhhhhhhhccccc-ceeeeeeccccccccc--cccccccccc
Confidence 4456666666654 23333 3345777788777777778889999899983 3488999999988753 5678999999
Q ss_pred cccceeeeeccCCceEe
Q 017527 154 GTGTIAYGFTEDGRDAR 170 (370)
Q Consensus 154 GTGi~g~gii~dG~l~~ 170 (370)
|.+..-.--+.||.+..
T Consensus 150 G~~~t~v~pV~dG~~~~ 166 (393)
T PF00022_consen 150 GYSSTSVVPVVDGYVLP 166 (393)
T ss_dssp SSS-EEEEEEETTEE-G
T ss_pred ceeeeeeeeeeeccccc
Confidence 99875455668997743
No 124
>COG5146 PanK Pantothenate kinase, acetyl-CoA regulated [Coenzyme metabolism]
Probab=87.16 E-value=27 Score=32.90 Aligned_cols=131 Identities=15% Similarity=0.151 Sum_probs=65.6
Q ss_pred cEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEe
Q 017527 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA 101 (370)
Q Consensus 22 ~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIg 101 (370)
-+-++||+|||-.+++..+. .-+-+.-.+..+. ..+++++-+..++++.-+..- ..+.-|.
T Consensus 18 ~~~vaiDiGGtLaKvv~sp~---------~snrl~F~t~eT~-----kId~~ve~l~~li~~h~k~C~---~~~~lia-- 78 (342)
T COG5146 18 VMKVAIDIGGTLAKVVQSPS---------QSNRLTFKTEETK-----KIDQVVEWLNNLIQQHEKLCL---TKITLIA-- 78 (342)
T ss_pred eEEEEEecCceeeeeeeCcc---------cccceeeehHhhh-----hHHHHHHHHHHHHHHHHhhhh---heeeEEe--
Confidence 47899999999999887543 1233333333332 355666655555554433221 1222222
Q ss_pred ecCC-----CChhhHHHH-------HHHHHh-------hCCCCceEEEeChHHHHHHhh-----cCCCCCeEEEEEcccc
Q 017527 102 VSGV-----NHPTDQQRI-------LNWLRD-------IFPGNVRLYVHNDALAALASG-----TMGKLHGCVLIAGTGT 157 (370)
Q Consensus 102 vpG~-----~~~~~~~~l-------~~~L~~-------~f~~~~pV~V~NDa~aa~~g~-----~~g~~~~v~l~~GTGi 157 (370)
.-|- +.-+.+.++ -+.|.. ..| ..|+|+||+.+-.++- ...-.+-+++.+|+|+
T Consensus 79 tGGga~kfyd~m~~~~~ikv~r~~eme~li~gl~~fv~~IP--~evFv~~d~~~e~~~~~~~~~~h~lypyilvNiGsGv 156 (342)
T COG5146 79 TGGGAYKFYDRMSKQLDIKVIRENEMEILINGLNYFVINIP--AEVFVEFDAASEGLGILLKEQGHDLYPYILVNIGSGV 156 (342)
T ss_pred cCCcchhhHHHHhhhccceeeecchHHHHHhcccceeeecc--HHHeeeeccccchhhhhhhhccccccceeeEeccCCe
Confidence 2231 111111111 111211 122 4589999988754431 1222466789999997
Q ss_pred eeeeeccCCc--eEeeCCCC
Q 017527 158 IAYGFTEDGR--DARAAGAG 175 (370)
Q Consensus 158 ~g~gii~dG~--l~~aGg~G 175 (370)
.. .-.+|. ..|.||.+
T Consensus 157 -Si-lkvtgpsqf~RvGGss 174 (342)
T COG5146 157 -SI-LKVTGPSQFERVGGSS 174 (342)
T ss_pred -EE-EEecCcchhccccccc
Confidence 42 334554 34667654
No 125
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=86.85 E-value=19 Score=38.23 Aligned_cols=87 Identities=16% Similarity=0.027 Sum_probs=50.6
Q ss_pred cCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhc--CC-
Q 017527 68 VGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGT--MG- 144 (370)
Q Consensus 68 ~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~--~g- 144 (370)
..++++...+..-+.+-.+..- ...+..+.|+||..-+...+...++.-+.. +. -++.+.|+..||+++-. .+
T Consensus 95 ~~~eeisa~~L~~lk~~ae~~l--g~~v~~~VItVPayF~d~qR~at~~A~~ia-Gl-~vlrlinEPtAAAlayg~~~~~ 170 (579)
T COG0443 95 YTPEEISAMILTKLKEDAEAYL--GEKVTDAVITVPAYFNDAQRQATKDAARIA-GL-NVLRLINEPTAAALAYGLDKGK 170 (579)
T ss_pred eCHHHHHHHHHHHHHHHHHHhh--CCCcceEEEEeCCCCCHHHHHHHHHHHHHc-CC-CeEEEecchHHHHHHhHhccCC
Confidence 3456555544444333332221 256889999999986554544555544433 32 47899999999988522 22
Q ss_pred CCCeEEEEEcccce
Q 017527 145 KLHGCVLIAGTGTI 158 (370)
Q Consensus 145 ~~~~v~l~~GTGi~ 158 (370)
....+|+=+|.|.-
T Consensus 171 ~~~vlV~DlGGGTf 184 (579)
T COG0443 171 EKTVLVYDLGGGTF 184 (579)
T ss_pred CcEEEEEEcCCCCE
Confidence 13444555776653
No 126
>PRK10854 exopolyphosphatase; Provisional
Probab=86.56 E-value=18 Score=37.68 Aligned_cols=137 Identities=12% Similarity=0.109 Sum_probs=83.3
Q ss_pred cEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecC--CC-ccccC--HHHHHHHHHHHHHHHHHHcC-CCccCc
Q 017527 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGC--SN-HNSVG--EDAARETIEKVMADALLKSG-SNRSAV 95 (370)
Q Consensus 22 ~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~--~n-~~~~~--~~~~~~~l~~~i~~~l~~~~-~~~~~v 95 (370)
..+-.||+|..++++.+++..+ ..-+++.+.+... .. ....+ .++.++...++++++.+... .+.+++
T Consensus 11 ~~~A~IDIGSNSirL~I~e~~~------~~~~~i~~~k~~vrLg~g~~~~g~Ls~e~~~r~~~~L~~F~~~~~~~~v~~v 84 (513)
T PRK10854 11 QEFAAVDLGSNSFHMVIARVVD------GAMQIIGRLKQRVHLADGLDSDNMLSEEAMERGLNCLSLFAERLQGFSPANV 84 (513)
T ss_pred CEEEEEEeccchheEEEEEecC------CcEEEeeeeeEEEECCCCcCCCCCcCHHHHHHHHHHHHHHHHHHHhCCCCeE
Confidence 4789999999999999998611 0113332222111 00 00011 24556777777766654331 111233
Q ss_pred ceEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHH---hhc--C-CCCCeEEEEEcccceeeeeccCCce
Q 017527 96 RAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALA---SGT--M-GKLHGCVLIAGTGTIAYGFTEDGRD 168 (370)
Q Consensus 96 ~~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~---g~~--~-g~~~~v~l~~GTGi~g~gii~dG~l 168 (370)
.+++.+-+=+..+...+.+.+++.++ .+|.|.+...=|.+ |.. . ...+.+++=+|.|+.-.-+..+|++
T Consensus 85 --~~vATsAlReA~N~~~fl~~i~~~tG--l~i~vIsG~EEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~~~~ 159 (513)
T PRK10854 85 --CIVGTHTLRQALNATDFLKRAEKVIP--YPIEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEP 159 (513)
T ss_pred --EEEehHHHHcCcCHHHHHHHHHHHHC--CCeEEeCHHHHHHHHHhhhhcccCCCCCeEEEEeCCCeEEEEEecCCCe
Confidence 46777777666677899999999998 89998887764433 221 1 1245788889999866655556653
No 127
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=86.16 E-value=18 Score=37.51 Aligned_cols=137 Identities=12% Similarity=0.087 Sum_probs=83.1
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEec--C---CCcc-ccCHHHHHHHHHHHHHHHHHHcC-CCcc
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG--C---SNHN-SVGEDAARETIEKVMADALLKSG-SNRS 93 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~--~---~n~~-~~~~~~~~~~l~~~i~~~l~~~~-~~~~ 93 (370)
+..+-.||+|..++++.+++..+ ..-+++.+.+.. . .... .. .++.++...++++++.+... .+.+
T Consensus 5 ~~~~A~IDIGSNSirL~I~~~~~------~~~~~l~~~k~~vrLg~g~~~~g~L-s~e~i~r~~~~L~~F~~~~~~~~v~ 77 (496)
T PRK11031 5 SSLYAAIDLGSNSFHMLVVREVA------GSIQTLARIKRKVRLAAGLDSDNAL-SNEAMERGWQCLRLFAERLQDIPPS 77 (496)
T ss_pred CCEEEEEEccccceeEEEEEecC------CceEEeecceeEEEccCCcCcCCCc-CHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34788999999999999998621 011222221111 0 1111 11 24556667777666654332 1112
Q ss_pred CcceEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHH---hhc--C-CCCCeEEEEEcccceeeeeccCCc
Q 017527 94 AVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALA---SGT--M-GKLHGCVLIAGTGTIAYGFTEDGR 167 (370)
Q Consensus 94 ~v~~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~---g~~--~-g~~~~v~l~~GTGi~g~gii~dG~ 167 (370)
++ .+++.+-+=+..+...+.+.+++.++ .+|-|.+...=|-+ |.. . ..++.+++=+|.|+--.-+..+++
T Consensus 78 ~i--~~vATsAvReA~N~~~fl~~i~~~tG--l~ievIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~ 153 (496)
T PRK11031 78 QI--RVVATATLRLAVNADEFLAKAQEILG--CPVQVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGAQ 153 (496)
T ss_pred eE--EEEEeHHHHcCcCHHHHHHHHHHHHC--CCeEEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEecCCc
Confidence 33 46677777666677899999999998 89998887764432 221 1 124578888999986665555666
Q ss_pred e
Q 017527 168 D 168 (370)
Q Consensus 168 l 168 (370)
+
T Consensus 154 ~ 154 (496)
T PRK11031 154 A 154 (496)
T ss_pred e
Confidence 5
No 128
>PF00814 Peptidase_M22: Glycoprotease family; InterPro: IPR000905 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase (3.4.24.57 from EC) from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues []. Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 [, ]. Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion [, ]. Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis []. The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2A6A_A 2GEL_G 2GEM_B 1OKJ_B 3ENO_A 3EN9_B 2VWB_B 3ENH_B 2IVO_D 2IVP_A ....
Probab=86.04 E-value=32 Score=32.66 Aligned_cols=212 Identities=16% Similarity=0.140 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHHHHcCCCccCcceEEEeecCCCChhh---HHHHHHHHHhhCCCCceEEEeChHHHHHHhhcCCCC--
Q 017527 72 AARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTD---QQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKL-- 146 (370)
Q Consensus 72 ~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgvpG~~~~~~---~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~~g~~-- 146 (370)
.=.+.|..++++++++++++..++.+|+++. ||..... ...+.+-|...++ +|++=.|--.+-++.......
T Consensus 28 ~H~~~L~~~i~~~l~~~~~~~~did~iavt~-GPGsftgLrvG~~~Ak~La~~~~--~Pli~v~~l~a~a~~~~~~~~~~ 104 (268)
T PF00814_consen 28 QHSENLPPLIEELLKEAGISLSDIDAIAVTR-GPGSFTGLRVGLSFAKGLALALN--IPLIGVSHLEAHALSARLSEGLK 104 (268)
T ss_dssp HHHHHHHHHHHHHHHHHTS-GGGESEEEEEE-ESS-HHHHHHHHHHHHHHHHHTT----EEEEEHHHHHHHHHHHHHTEE
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEEec-CCCcccccHHHHHHHHHHHHHhC--CCeEeeccHHHHHHhHhhhcccc
Confidence 3467788999999999999999999999886 4433221 3466777888887 899988877664443321111
Q ss_pred --CeEEEEEcccceeeeeccCCceEeeCCCCCCcCCCCchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhH
Q 017527 147 --HGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDEL 224 (370)
Q Consensus 147 --~~v~l~~GTGi~g~gii~dG~l~~aGg~G~llgd~Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l 224 (370)
-.+.+..|++- -+ ...++.....|+ . .|.-.+-.+-+. -+..+-..+..+ ..+.+.... +.+
T Consensus 105 ~P~~~~isa~~~~-vy-~~~~~~~~~~~~---t-~d~~~ge~~dk~-----~~~l~l~~~~g~----~le~la~~~-~~~ 168 (268)
T PF00814_consen 105 FPLVLLISAGHTE-VY-LAEGGDYEILGE---T-LDDAIGEAFDKV-----ARLLGLPYPGGP----ALEKLASEG-EAF 168 (268)
T ss_dssp SEEEEEEECSTCE-EE-EEETTEEEEECC---B-SSSCHHHHHHHH-----HHHTT--SSHHH----HHHHHHCT--S--
T ss_pred CceEEEEECCCcc-EE-EEEeeEEEeecc---c-cccccHHHHhhH-----HHHhccccccCc----HHHHHHHhC-Ccc
Confidence 12334455554 22 222322222221 1 121111111111 111110011111 111111011 110
Q ss_pred H-HHhccCCChHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccc
Q 017527 225 I-GWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRW 303 (370)
Q Consensus 225 ~-~~~~~~~~~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~ 303 (370)
- .....+.+. .+..+...+....++ ...|..+-+...++|...+...++..+ +..|+++|||+.. +.+
T Consensus 169 ~~p~~~~~~~~-sFsG~~t~~~~~i~~-~~iA~s~q~~~~~~l~~~~~~a~~~~~--------~~~lv~~GGVaaN-~~l 237 (268)
T PF00814_consen 169 KFPRPLKNCDF-SFSGLKTAVYRLIEK-ADIAASFQEAIADHLAKKAPRALEKPR--------AKSLVVSGGVAAN-KYL 237 (268)
T ss_dssp ----SEETTEE-EEHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHT--------CSEEEEESGGGGH-HHH
T ss_pred eeccceeeeeE-EEEcccHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHhhc--------ccccchHHHHHHH-HHH
Confidence 0 000000000 001111122222222 556767766678899999888888877 6899999999863 343
Q ss_pred cchHHHHHHHHh
Q 017527 304 DIGREVVKCILR 315 (370)
Q Consensus 304 ~l~~~v~~~l~~ 315 (370)
.+.+++...+
T Consensus 238 --r~~l~~~~~~ 247 (268)
T PF00814_consen 238 --REGLRKLCSE 247 (268)
T ss_dssp --HHHHHHHHHH
T ss_pred --HHHHHHHHHc
Confidence 6666666555
No 129
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=85.95 E-value=36 Score=33.24 Aligned_cols=51 Identities=12% Similarity=0.128 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHH
Q 017527 255 ANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCI 313 (370)
Q Consensus 255 A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l 313 (370)
....+++..+++.+.+........ +..++.|+|.||-+.-. .+ .+.+.+.+
T Consensus 248 l~~~~~~l~~EI~rsl~~y~~~~~-----~~~i~~I~L~Ggga~l~-gL--~~~l~~~l 298 (340)
T PF11104_consen 248 LRPFLEELAREIRRSLDFYQSQSG-----GESIERIYLSGGGARLP-GL--AEYLSEEL 298 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----------SEEEEESGGGGST-TH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC-----CCCCCEEEEECCccchh-hH--HHHHHHHH
Confidence 345566666666666666555543 23578999999998642 22 44444444
No 130
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=85.63 E-value=8.8 Score=39.46 Aligned_cols=141 Identities=15% Similarity=0.203 Sum_probs=73.6
Q ss_pred EEEEEEcCccceEEEEEeCC--CCC-C-CCC----CCCCeEEEEEec-CC--CccccCHHHHHHHHHHHHHHHHHHcCCC
Q 017527 23 VILGLDGGTTSTVCICMPVI--SMS-D-SLP----DPLPVLARAAAG-CS--NHNSVGEDAARETIEKVMADALLKSGSN 91 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~--~~~-~-~~~----~~g~il~~~~~~-~~--n~~~~~~~~~~~~l~~~i~~~l~~~~~~ 91 (370)
.-+|+|||.|.|.+++..+. +.+ . +-| .+-+++.+...- ++ +....+ .+.|.+.|++-.++++++
T Consensus 7 ~SVGIDIGTsTTqlvfSrl~l~n~a~~~~vpr~~I~dkev~yrS~i~fTPl~~~~~ID----~~~i~~~V~~ey~~Agi~ 82 (475)
T PRK10719 7 LSVGIDIGTTTTQVIFSRLELENRASVFQVPRIEIIDKEIIYRSPIYFTPLLKQGEID----EAAIKELIEEEYQKAGIA 82 (475)
T ss_pred EEEEEeccCceEEEEEEEEEEecccccccCceEEEeeeEEEEecCceecCCCCCcccc----HHHHHHHHHHHHHHcCCC
Confidence 56899999999998877652 111 0 100 122344443221 21 111122 355777788888889999
Q ss_pred ccCcceEEEeecCCCChhhHHHHHHHHHhhCCCCceEEE------eCh----HHHHHHhhc-CCCC-CeEEEEEccccee
Q 017527 92 RSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYV------HND----ALAALASGT-MGKL-HGCVLIAGTGTIA 159 (370)
Q Consensus 92 ~~~v~~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V------~ND----a~aa~~g~~-~g~~-~~v~l~~GTGi~g 159 (370)
+++|..=..=+.|-.. ...++++.+++.-.. .-=+| +=+ ..++..+.. .-.+ -.+++=+|.|+--
T Consensus 83 ~~die~~ahIITg~~~--~~~Nl~~~v~~~~~~-~gdfVVA~AG~~le~iva~~ASg~avLseEke~gVa~IDIGgGTT~ 159 (475)
T PRK10719 83 PESIDSGAVIITGETA--RKENAREVVMALSGS-AGDFVVATAGPDLESIIAGKGAGAQTLSEERNTRVLNIDIGGGTAN 159 (475)
T ss_pred HHHccccEEEEEechh--HHHHHHHHHHHhccc-ccceeeeccCccHHHhhhHHHhhHHHhhhhccCceEEEEeCCCceE
Confidence 8888753333444432 234666666652110 11111 001 111111111 1112 3345668999888
Q ss_pred eeeccCCceEe
Q 017527 160 YGFTEDGRDAR 170 (370)
Q Consensus 160 ~gii~dG~l~~ 170 (370)
..+..+|++..
T Consensus 160 iaVf~~G~l~~ 170 (475)
T PRK10719 160 YALFDAGKVID 170 (475)
T ss_pred EEEEECCEEEE
Confidence 88999998854
No 131
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=85.57 E-value=6.5 Score=40.36 Aligned_cols=141 Identities=16% Similarity=0.248 Sum_probs=76.9
Q ss_pred EEEEEEcCccceEEEEEeCC---CCCCCC-C----CCCCeEEEEEec-CC--CccccCHHHHHHHHHHHHHHHHHHcCCC
Q 017527 23 VILGLDGGTTSTVCICMPVI---SMSDSL-P----DPLPVLARAAAG-CS--NHNSVGEDAARETIEKVMADALLKSGSN 91 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~---~~~~~~-~----~~g~il~~~~~~-~~--n~~~~~~~~~~~~l~~~i~~~l~~~~~~ 91 (370)
.-+|||||.|.|.+++..+. .++... | .+-+++.+...- ++ +....+ .+.|.+.|++-.+++++.
T Consensus 4 ~SVGIDIGTSTTQlvfSrl~l~n~a~~~~vPri~I~dkeViYrS~I~fTPl~~~~~ID----~~al~~iv~~eY~~Agi~ 79 (473)
T PF06277_consen 4 LSVGIDIGTSTTQLVFSRLTLENRASGFSVPRIEIVDKEVIYRSPIYFTPLLSQTEID----AEALKEIVEEEYRKAGIT 79 (473)
T ss_pred EEEEEeecCCceeEEEEEeEEEeccCCCccceEEEeccEEEecCCccccCCCCCCccC----HHHHHHHHHHHHHHcCCC
Confidence 46899999999998887641 111100 0 122344443221 11 111122 355777788888899999
Q ss_pred ccCcceEEEeecCCCC-hhhHHHHHHHHHhhCCCCceEE--EeChHHHHHHhh---c--C-CCCCeEE--EEEcccceee
Q 017527 92 RSAVRAVCLAVSGVNH-PTDQQRILNWLRDIFPGNVRLY--VHNDALAALASG---T--M-GKLHGCV--LIAGTGTIAY 160 (370)
Q Consensus 92 ~~~v~~IgIgvpG~~~-~~~~~~l~~~L~~~f~~~~pV~--V~NDa~aa~~g~---~--~-g~~~~v~--l~~GTGi~g~ 160 (370)
+++|..=+|=+-|-.- .++-..+...|.+..++ =|. -.-|-..-++|- + + ...+..+ +=+|.|.-=.
T Consensus 80 p~~I~TGAVIITGETArKeNA~~v~~~Ls~~aGD--FVVATAGPdLEsiiAgkGsGA~~~S~~~~~~V~NiDIGGGTtN~ 157 (473)
T PF06277_consen 80 PEDIDTGAVIITGETARKENAREVLHALSGFAGD--FVVATAGPDLESIIAGKGSGAAALSKEHHTVVANIDIGGGTTNI 157 (473)
T ss_pred HHHCccccEEEecchhhhhhHHHHHHHHHHhcCC--EEEEccCCCHHHHHhccCccHHHHhhhhCCeEEEEEeCCCceeE
Confidence 9999865555666533 23345778888887763 222 223434333321 1 1 1123333 4467666445
Q ss_pred eeccCCceE
Q 017527 161 GFTEDGRDA 169 (370)
Q Consensus 161 gii~dG~l~ 169 (370)
.+..+|++.
T Consensus 158 avf~~G~v~ 166 (473)
T PF06277_consen 158 AVFDNGEVI 166 (473)
T ss_pred EEEECCEEE
Confidence 666777764
No 132
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=84.76 E-value=40 Score=32.75 Aligned_cols=74 Identities=18% Similarity=0.205 Sum_probs=42.2
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCC-ccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEe
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSN-HNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA 101 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n-~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIg 101 (370)
.++|||+|.++++++.+... +..-++......+.+. ....+.-.-.+.+.+.+++++++.+. +...+.++
T Consensus 4 ~~vgiDIg~~~Ik~v~~~~~------~~~~~v~~~~~~~~p~~~i~~g~i~d~~~~~~~l~~~~~~~~~---~~k~v~~a 74 (348)
T TIGR01175 4 LLVGIDIGSTSVKVAQLKRS------GDRYKLEHYAVEPLPAGIFTEGHIVEYQAVAEALKELLSELGI---NTKKAATA 74 (348)
T ss_pred cEEEEEeccCeEEEEEEEec------CCceEEEEEEEEECCCCcccCCCccCHHHHHHHHHHHHHHcCC---CcceEEEE
Confidence 68999999999999999741 0122444444433321 10111111134456666667666654 34567788
Q ss_pred ecCC
Q 017527 102 VSGV 105 (370)
Q Consensus 102 vpG~ 105 (370)
+||.
T Consensus 75 lp~~ 78 (348)
T TIGR01175 75 VPGS 78 (348)
T ss_pred ecCC
Confidence 8884
No 133
>COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=83.33 E-value=22 Score=32.73 Aligned_cols=100 Identities=17% Similarity=0.091 Sum_probs=72.5
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEee
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgv 102 (370)
.+|++|-.+..+.+++.+.+ +++++.+........ --++|..++++++.+++....++.+|.++.
T Consensus 2 ~iLaiDTs~~~~s~ai~~~~--------~~~vl~~~~~~~~r~-------hse~l~~~i~~ll~~~~~~~~dld~iav~~ 66 (220)
T COG1214 2 KILAIDTSTSALSVALYLAD--------DGKVLAEHTEKLKRN-------HAERLMPMIDELLKEAGLSLQDLDAIAVAK 66 (220)
T ss_pred cEEEEEcChhhhhhheeecC--------CCcEEEEEEEecccc-------HHHHHHHHHHHHHHHcCCCHHHCCEEEEcc
Confidence 58999998888887777651 688988887655322 246677888889999998888999998886
Q ss_pred cCCCChh---hHHHHHHHHHhhCCCCceEEEeChHHHHHHh
Q 017527 103 SGVNHPT---DQQRILNWLRDIFPGNVRLYVHNDALAALAS 140 (370)
Q Consensus 103 pG~~~~~---~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g 140 (370)
|+.+-. -+.-+.+-|.-.++ +|++-.|--.+.+..
T Consensus 67 -GPGSFTGlRIG~~~AkgLA~~l~--iplvgvssL~~~A~~ 104 (220)
T COG1214 67 -GPGSFTGLRIGVAFAKGLALALN--IPLVGVSSLEALAQG 104 (220)
T ss_pred -CCCcccchhhHHHHHHHHHHHcC--CCEEEeCHHHHHHHh
Confidence 443322 23455666777776 899988877766554
No 134
>PTZ00452 actin; Provisional
Probab=82.69 E-value=32 Score=34.32 Aligned_cols=90 Identities=21% Similarity=0.317 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHH-HcCCCccCcceEEEeecCCCChhhHHHHHHHHHhhCCCCce-EEEeChHHHHHHhhcCCCCCeEEEE
Q 017527 75 ETIEKVMADALL-KSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVR-LYVHNDALAALASGTMGKLHGCVLI 152 (370)
Q Consensus 75 ~~l~~~i~~~l~-~~~~~~~~v~~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~p-V~V~NDa~aa~~g~~~g~~~~v~l~ 152 (370)
+.++.+++.++. +..+.+++ ..|-+.-|-...+..+..+.+.|=+.|+ +| +++.+++.+++.+ .|..++++|-
T Consensus 80 d~~e~iw~~~f~~~l~v~p~~-~pvlitE~~~~~~~~Re~l~eilFE~~~--vp~~~~~~~~~lslya--~g~~tglVVD 154 (375)
T PTZ00452 80 DDIEIIWHHAFYNELCMSPED-QPVFMTDAPMNSKFNRERMTQIMFETFN--TPCLYISNEAVLSLYT--SGKTIGLVVD 154 (375)
T ss_pred HHHHHHHHHHHHhhcCCCccc-CceeeecCCCCCHHHHHHHHHHHhhccC--CceEEEechHHHHHHH--CCCceeeeec
Confidence 344455555442 33444433 3455555555666677889999989998 66 7889999999885 3667899999
Q ss_pred EcccceeeeeccCCceE
Q 017527 153 AGTGTIAYGFTEDGRDA 169 (370)
Q Consensus 153 ~GTGi~g~gii~dG~l~ 169 (370)
+|.+..-.--+.||.+.
T Consensus 155 iG~~~t~v~PV~dG~~l 171 (375)
T PTZ00452 155 SGEGVTHCVPVFEGHQI 171 (375)
T ss_pred CCCCcceEEEEECCEEe
Confidence 99997444455788764
No 135
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=82.60 E-value=13 Score=38.64 Aligned_cols=130 Identities=17% Similarity=0.181 Sum_probs=77.3
Q ss_pred cEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEe------cCCCccccCHHHHHHHHHHHHHHHHHHcC-CCccC
Q 017527 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAA------GCSNHNSVGEDAARETIEKVMADALLKSG-SNRSA 94 (370)
Q Consensus 22 ~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~------~~~n~~~~~~~~~~~~l~~~i~~~l~~~~-~~~~~ 94 (370)
..+..||+|..++|+++++..+ +.-+++.+.+. ...+.... .++.+++..++++.+.+.+. .+..+
T Consensus 3 ~~~A~IDiGSNS~rlvV~~~~~------~~~~~l~~~k~~vrLgegl~~~g~L-~~eai~R~~~aL~~f~e~~~~~~~~~ 75 (492)
T COG0248 3 RRVAAIDLGSNSFRLVVAEITP------GSFQVLFREKRIVRLGEGLDATGNL-SEEAIERALSALKRFAELLDGFGAEE 75 (492)
T ss_pred ceEEEEEecCCeEEEEEEeccC------CccchhhhhhhheehhcCccccCCc-CHHHHHHHHHHHHHHHHHHhhCCCCE
Confidence 3688999999999999998621 01122221111 11111112 34556666666666654432 22233
Q ss_pred cceEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeC---hHHHHHHhh--cCC-CCCeEEEEEcccceeeee
Q 017527 95 VRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHN---DALAALASG--TMG-KLHGCVLIAGTGTIAYGF 162 (370)
Q Consensus 95 v~~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~N---Da~aa~~g~--~~g-~~~~v~l~~GTGi~g~gi 162 (370)
|. .++++-+=+..+...+...+++.++ .|+-|.. .|....+|. .++ ..+++++=+|.||-=..+
T Consensus 76 v~--~vATsA~R~A~N~~eFl~rv~~~~G--~~ievIsGeeEArl~~lGv~~~~~~~~~~lv~DIGGGStEl~~ 145 (492)
T COG0248 76 VR--VVATSALRDAPNGDEFLARVEKELG--LPIEVISGEEEARLIYLGVASTLPRKGDGLVIDIGGGSTELVL 145 (492)
T ss_pred EE--EehhHHHHcCCCHHHHHHHHHHHhC--CceEEeccHHHHHHHHHHHHhcCCCCCCEEEEEecCCeEEEEE
Confidence 33 5566665444566789999999998 7888743 344455553 244 678999999999854433
No 136
>PTZ00466 actin-like protein; Provisional
Probab=82.31 E-value=27 Score=34.89 Aligned_cols=91 Identities=22% Similarity=0.294 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHcCCCccCcceEEEeecCCCChhhHHHHHHHHHhhCCCCce-EEEeChHHHHHHhhcCCCCCeEEEEE
Q 017527 75 ETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVR-LYVHNDALAALASGTMGKLHGCVLIA 153 (370)
Q Consensus 75 ~~l~~~i~~~l~~~~~~~~~v~~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~p-V~V~NDa~aa~~g~~~g~~~~v~l~~ 153 (370)
+.++.+++.+.++.++++++ ..|-+.-|-...+..++.+.+.|=+.|+ +| +++.+++.+++.+. |..++++|-+
T Consensus 87 d~~e~iw~~~f~~l~v~~~~-~pvllte~~~~~~~~re~~~e~lFE~~~--~p~~~~~~~~~lsl~a~--g~~tglVVD~ 161 (380)
T PTZ00466 87 NDMENIWIHVYNSMKINSEE-HPVLLTEAPLNPQKNKEKIAEVFFETFN--VPALFISIQAILSLYSC--GKTNGTVLDC 161 (380)
T ss_pred HHHHHHHHHHHhhcccCCcc-CeEEEecCccccHHHHHHHHHHHhccCC--CCeEEEecchHHHHHhc--CCceEEEEeC
Confidence 34455555555445554433 2344555544555566788888888887 55 78899999998853 5678999999
Q ss_pred cccceeeeeccCCceEe
Q 017527 154 GTGTIAYGFTEDGRDAR 170 (370)
Q Consensus 154 GTGi~g~gii~dG~l~~ 170 (370)
|.+..-.--+.||....
T Consensus 162 G~~~t~v~PV~~G~~~~ 178 (380)
T PTZ00466 162 GDGVCHCVSIYEGYSIT 178 (380)
T ss_pred CCCceEEEEEECCEEee
Confidence 99874433467887753
No 137
>PRK13410 molecular chaperone DnaK; Provisional
Probab=81.46 E-value=46 Score=36.01 Aligned_cols=87 Identities=16% Similarity=0.053 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHHHHHHHHcCCCccCcceEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhcC---CC
Q 017527 69 GEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTM---GK 145 (370)
Q Consensus 69 ~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~~---g~ 145 (370)
+|+++...+...+.+..+..- ...+..+.|+||-.-+......+++..+.. +. ..+.+.|+..||+++-.. ..
T Consensus 111 speel~a~iL~~lk~~ae~~l--g~~v~~~VITVPa~f~~~qR~a~~~Aa~~A-Gl-~v~~li~EPtAAAlayg~~~~~~ 186 (668)
T PRK13410 111 APEELSAMILRKLADDASRYL--GEPVTGAVITVPAYFNDSQRQATRDAGRIA-GL-EVERILNEPTAAALAYGLDRSSS 186 (668)
T ss_pred cHHHHHHHHHHHHHHHHHHHh--CCCcceEEEEECCCCCHHHHHHHHHHHHHc-CC-CeEEEecchHHHHHHhccccCCC
Confidence 455555554444443333221 135778889999986554445566655443 32 246799999999885321 12
Q ss_pred CCeEEEEEccccee
Q 017527 146 LHGCVLIAGTGTIA 159 (370)
Q Consensus 146 ~~~v~l~~GTGi~g 159 (370)
...+++=+|.|.--
T Consensus 187 ~~vlV~DlGgGT~D 200 (668)
T PRK13410 187 QTVLVFDLGGGTFD 200 (668)
T ss_pred CEEEEEECCCCeEE
Confidence 45566778877643
No 138
>PF13941 MutL: MutL protein
Probab=81.40 E-value=5.8 Score=40.74 Aligned_cols=57 Identities=12% Similarity=0.130 Sum_probs=42.2
Q ss_pred EEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCC
Q 017527 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGS 90 (370)
Q Consensus 24 vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~ 90 (370)
+|.+|+|+|.|++.++|. ..++.+++.+...+++-. +..+..-+.++++++.+..+.
T Consensus 2 ~L~~DiGST~Tk~~l~d~------~~~~~~~ig~a~apTTv~----~~Dv~~G~~~A~~~l~~~~~~ 58 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDL------VDGEPRLIGQAEAPTTVE----PGDVTIGLNNALEQLEEQTPA 58 (457)
T ss_pred EEEEEeCCcceEEeEEec------cCCccEEEEEEeCCCCcC----cccHHHHHHHHHHHHHHhcCC
Confidence 688999999999999993 122688999998887531 246677777777777666553
No 139
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=81.32 E-value=8.5 Score=35.26 Aligned_cols=131 Identities=18% Similarity=0.190 Sum_probs=64.6
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccc----cCHHHHHHHHHHHHHHHHHHcCCCccCcc
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNS----VGEDAARETIEKVMADALLKSGSNRSAVR 96 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~----~~~~~~~~~l~~~i~~~l~~~~~~~~~v~ 96 (370)
++..+|||+|..++...++|. +|..++-.. .....-. .+.-++++-+..+.+.+-++.++. +.
T Consensus 28 sk~~vGVDLGT~~iV~~vlD~---------d~~Pvag~~-~~advVRDGiVvdf~eaveiVrrlkd~lEk~lGi~---~t 94 (277)
T COG4820 28 SKLWVGVDLGTCDIVSMVLDR---------DGQPVAGCL-DWADVVRDGIVVDFFEAVEIVRRLKDTLEKQLGIR---FT 94 (277)
T ss_pred CceEEEeecccceEEEEEEcC---------CCCeEEEEe-hhhhhhccceEEehhhHHHHHHHHHHHHHHhhCeE---ee
Confidence 579999999999999999998 787765321 1110000 011122222222222322233321 21
Q ss_pred eEEEee-cCCCChhhHHHHHHHHHhhCCCCceE-EEeChHHHHHHhhcCCCCCeEEEEEcccceeeeeccCCceEe
Q 017527 97 AVCLAV-SGVNHPTDQQRILNWLRDIFPGNVRL-YVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDAR 170 (370)
Q Consensus 97 ~IgIgv-pG~~~~~~~~~l~~~L~~~f~~~~pV-~V~NDa~aa~~g~~~g~~~~v~l~~GTGi~g~gii~dG~l~~ 170 (370)
...-++ ||.... +.......|+.. + ..| ++...-.+++ ...+-.|+.++-+|.|.-|-.|+.+|++..
T Consensus 95 ha~taiPPGt~~~-~~ri~iNViESA-G--levl~vlDEPTAaa--~vL~l~dg~VVDiGGGTTGIsi~kkGkViy 164 (277)
T COG4820 95 HAATAIPPGTEQG-DPRISINVIESA-G--LEVLHVLDEPTAAA--DVLQLDDGGVVDIGGGTTGISIVKKGKVIY 164 (277)
T ss_pred eccccCCCCccCC-CceEEEEeeccc-C--ceeeeecCCchhHH--HHhccCCCcEEEeCCCcceeEEEEcCcEEE
Confidence 111122 343211 101112223332 2 222 2222222221 123557899999999988888999999853
No 140
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=80.05 E-value=60 Score=31.42 Aligned_cols=65 Identities=14% Similarity=0.123 Sum_probs=41.0
Q ss_pred eEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhcCC---CCCeEEEEEcccceeeeec
Q 017527 97 AVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMG---KLHGCVLIAGTGTIAYGFT 163 (370)
Q Consensus 97 ~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~~g---~~~~v~l~~GTGi~g~gii 163 (370)
.+.+++|...+......++..++ .++. ..+.+.|+..||+++.... ....+++-+|.|+--..++
T Consensus 98 ~~vi~vP~~~~~~~r~~~~~a~~-~ag~-~~~~li~ep~aaa~~~g~~~~~~~~~lvvDiGggttdvs~v 165 (334)
T PRK13927 98 RVVICVPSGITEVERRAVRESAL-GAGA-REVYLIEEPMAAAIGAGLPVTEPTGSMVVDIGGGTTEVAVI 165 (334)
T ss_pred cEEEEeCCCCCHHHHHHHHHHHH-HcCC-CeeccCCChHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEE
Confidence 57788995444333444555554 4452 3588999999998863221 2345788899888655555
No 141
>PRK13411 molecular chaperone DnaK; Provisional
Probab=79.50 E-value=56 Score=35.18 Aligned_cols=85 Identities=15% Similarity=0.027 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHHHHHHH-cCCCccCcceEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhcC----
Q 017527 69 GEDAARETIEKVMADALLK-SGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTM---- 143 (370)
Q Consensus 69 ~~~~~~~~l~~~i~~~l~~-~~~~~~~v~~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~~---- 143 (370)
+++++...+...+.+..+. .+ ..+..+.|+||..-+...+..+++..+.. +. ..+.+.|+..||+++-..
T Consensus 109 ~peei~a~iL~~lk~~ae~~lg---~~v~~~VITVPa~f~~~qR~a~~~Aa~~A-Gl-~v~~li~EPtAAAl~y~~~~~~ 183 (653)
T PRK13411 109 TPQEISAMILQKLKQDAEAYLG---EPVTQAVITVPAYFTDAQRQATKDAGTIA-GL-EVLRIINEPTAAALAYGLDKQD 183 (653)
T ss_pred CHHHHHHHHHHHHHHHHHHHhC---CCcceEEEEECCCCCcHHHHHHHHHHHHc-CC-CeEEEecchHHHHHHhcccccC
Confidence 4556555544443333322 22 35778889999986555555666655543 32 357899999999885321
Q ss_pred CCCCeEEEEEcccce
Q 017527 144 GKLHGCVLIAGTGTI 158 (370)
Q Consensus 144 g~~~~v~l~~GTGi~ 158 (370)
.....+++=+|.|.-
T Consensus 184 ~~~~vlV~DlGgGT~ 198 (653)
T PRK13411 184 QEQLILVFDLGGGTF 198 (653)
T ss_pred CCCEEEEEEcCCCeE
Confidence 123456677887754
No 142
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=78.77 E-value=96 Score=33.07 Aligned_cols=90 Identities=11% Similarity=-0.014 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHHHHHHHHcCCCccCcceEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhcC---CC
Q 017527 69 GEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTM---GK 145 (370)
Q Consensus 69 ~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~~---g~ 145 (370)
+++++...+..-+.+..+.. . ...+..+.|+||-.-+...+..+++..+.. +. -.+.+.|+..||+++-.. ..
T Consensus 117 speei~a~iL~~lk~~ae~~-l-g~~v~~aVITVPa~f~~~qR~a~~~Aa~~A-Gl-~v~~li~EPtAAAlay~~~~~~~ 192 (595)
T PRK01433 117 RIPEIAAEIFIYLKNQAEEQ-L-KTNITKAVITVPAHFNDAARGEVMLAAKIA-GF-EVLRLIAEPTAAAYAYGLNKNQK 192 (595)
T ss_pred cHHHHHHHHHHHHHHHHHHH-h-CCCcceEEEEECCCCCHHHHHHHHHHHHHc-CC-CEEEEecCcHHHHHHHhcccCCC
Confidence 45665555444444433322 1 135778889999986555555666665544 31 356799999998875221 12
Q ss_pred CCeEEEEEcccceeeee
Q 017527 146 LHGCVLIAGTGTIAYGF 162 (370)
Q Consensus 146 ~~~v~l~~GTGi~g~gi 162 (370)
...+++=+|.|+--..+
T Consensus 193 ~~vlV~DlGGGT~DvSi 209 (595)
T PRK01433 193 GCYLVYDLGGGTFDVSI 209 (595)
T ss_pred CEEEEEECCCCcEEEEE
Confidence 34566777877644333
No 143
>CHL00094 dnaK heat shock protein 70
Probab=78.47 E-value=56 Score=34.93 Aligned_cols=68 Identities=16% Similarity=0.047 Sum_probs=42.3
Q ss_pred CcceEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhcC---CCCCeEEEEEcccceeeeec
Q 017527 94 AVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTM---GKLHGCVLIAGTGTIAYGFT 163 (370)
Q Consensus 94 ~v~~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~~---g~~~~v~l~~GTGi~g~gii 163 (370)
.+..+.|++|-.-+...+..+++..+.. +. ..+.+.|+..||+++-.. .....+++=+|.|+--..++
T Consensus 134 ~v~~~VItVPa~f~~~qR~a~~~Aa~~A-Gl-~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~ 204 (621)
T CHL00094 134 TVTQAVITVPAYFNDSQRQATKDAGKIA-GL-EVLRIINEPTAASLAYGLDKKNNETILVFDLGGGTFDVSIL 204 (621)
T ss_pred CCCeEEEEECCCCCHHHHHHHHHHHHHc-CC-ceEEEeccHHHHHHHhccccCCCCEEEEEEcCCCeEEEEEE
Confidence 4677888999875544444555555433 42 357899999999885321 12345667788776544444
No 144
>PTZ00297 pantothenate kinase; Provisional
Probab=75.94 E-value=1.8e+02 Score=34.65 Aligned_cols=52 Identities=8% Similarity=0.062 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHh
Q 017527 254 VANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILR 315 (370)
Q Consensus 254 ~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~ 315 (370)
.|..++.-...-+|+.........+. ..|+++|+....++.. ++.+..+++=
T Consensus 1367 i~~sll~~is~nIgqia~l~a~~~~~--------~~i~f~G~~i~~~~~~--~~~l~~a~~~ 1418 (1452)
T PTZ00297 1367 IVRSLLNMISSNVTQLAYLHSRVQGV--------PNIFFAGGFVRDNPII--WSHISSTMKY 1418 (1452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC--------CEEEEecchhcCCHHH--HHHHHHHHHH
Confidence 46677777777777776666777774 8999999988777654 5666555543
No 145
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=74.83 E-value=6 Score=38.74 Aligned_cols=71 Identities=20% Similarity=0.215 Sum_probs=42.2
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeE---EEEEecCC-CccccCHHHHHHHHHHHHHHHHHHcCCCccCcceE
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVL---ARAAAGCS-NHNSVGEDAARETIEKVMADALLKSGSNRSAVRAV 98 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il---~~~~~~~~-n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~I 98 (370)
..+|||||.++++++-+.. .|+-. .....+.+ |....+.-.=.+.+.+.+++++++++++ .+.+
T Consensus 11 ~~vGIdI~~~sVKvvqLs~---------~g~~~kLe~y~~~~lp~~iv~dg~ivd~~av~~~Lk~ala~~gi~---~k~a 78 (354)
T COG4972 11 AAVGIDIGSHSVKVVQLSR---------SGNRYKLEKYASEPLPENIVADGKIVDYDAVASALKRALAKLGIK---SKNA 78 (354)
T ss_pred ceeeEeeccceEEEEEEcc---------cCCceeeeeeeecccCccccccCCcccHHHHHHHHHHHHHhcCcc---hhhh
Confidence 5899999999999988875 34332 22222222 2111111112345666777788777764 4556
Q ss_pred EEeecCC
Q 017527 99 CLAVSGV 105 (370)
Q Consensus 99 gIgvpG~ 105 (370)
..+|||-
T Consensus 79 a~AVP~s 85 (354)
T COG4972 79 ATAVPGS 85 (354)
T ss_pred hhhcCcc
Confidence 6788885
No 146
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=74.51 E-value=83 Score=30.96 Aligned_cols=91 Identities=16% Similarity=0.128 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHcCCCcc--CcceEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhcC--C-CCCe
Q 017527 74 RETIEKVMADALLKSGSNRS--AVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTM--G-KLHG 148 (370)
Q Consensus 74 ~~~l~~~i~~~l~~~~~~~~--~v~~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~~--g-~~~~ 148 (370)
++..+.+++.++++...+.. .--.|.+++|.-.+.-.+..+++.+++... ..|++.....+|+.|... . ..-.
T Consensus 78 ~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea~~~aGa--~~V~lieEp~aAAIGaglpi~ep~G~ 155 (342)
T COG1077 78 FEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEAAESAGA--REVYLIEEPMAAAIGAGLPIMEPTGS 155 (342)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHHHHHhccC--ceEEEeccHHHHHhcCCCcccCCCCC
Confidence 34444455555544322211 223588999998877777888998888876 689999999999987531 1 1223
Q ss_pred EEEEEcccceeeeeccCC
Q 017527 149 CVLIAGTGTIAYGFTEDG 166 (370)
Q Consensus 149 v~l~~GTGi~g~gii~dG 166 (370)
+++-+|-|+.=.+++..|
T Consensus 156 mvvDIGgGTTevaVISlg 173 (342)
T COG1077 156 MVVDIGGGTTEVAVISLG 173 (342)
T ss_pred EEEEeCCCceeEEEEEec
Confidence 445555565444444433
No 147
>PTZ00004 actin-2; Provisional
Probab=72.72 E-value=55 Score=32.54 Aligned_cols=70 Identities=21% Similarity=0.293 Sum_probs=50.8
Q ss_pred eEEEeecCCCChhhHHHHHHHHHhhCCCCce-EEEeChHHHHHHhhcCCCCCeEEEEEcccceeeeeccCCceEe
Q 017527 97 AVCLAVSGVNHPTDQQRILNWLRDIFPGNVR-LYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDAR 170 (370)
Q Consensus 97 ~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~p-V~V~NDa~aa~~g~~~g~~~~v~l~~GTGi~g~gii~dG~l~~ 170 (370)
.|-+.-|-...+..+..+.+.|=+.|+ +| +++.+++.+++.+. |..++++|-+|.+..-.--+.||.+..
T Consensus 103 pvllte~~~~~~~~r~~~~e~lFE~~~--~~~~~~~~~~~ls~ya~--g~~tglVVDiG~~~t~v~pV~dG~~l~ 173 (378)
T PTZ00004 103 PVLLTEAPLNPKANREKMTQIMFETHN--VPAMYVAIQAVLSLYAS--GRTTGIVLDSGDGVSHTVPIYEGYSLP 173 (378)
T ss_pred cceeecCCCCcHHHHHHHHHHHHhhcC--CceEEeeccHHHHHHhc--CCceEEEEECCCCcEEEEEEECCEEee
Confidence 455555555555566788888888898 55 77999999988753 557899999999864444557887753
No 148
>PTZ00281 actin; Provisional
Probab=72.62 E-value=93 Score=30.92 Aligned_cols=91 Identities=18% Similarity=0.259 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHH-HHcCCCccCcceEEEeecCCCChhhHHHHHHHHHhhCCCCce-EEEeChHHHHHHhhcCCCCCeEEE
Q 017527 74 RETIEKVMADAL-LKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVR-LYVHNDALAALASGTMGKLHGCVL 151 (370)
Q Consensus 74 ~~~l~~~i~~~l-~~~~~~~~~v~~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~p-V~V~NDa~aa~~g~~~g~~~~v~l 151 (370)
.+.++.+++.++ +...+++.+ ..|-+.-|-...+..++.+.+.|=+.|+ +| +++.+++.+++.+ .|..++++|
T Consensus 80 wd~~e~l~~~~f~~~l~v~p~~-~pvllte~~~~~~~~re~l~e~lFE~~~--vp~~~~~~~~~ls~ya--~g~~tglVV 154 (376)
T PTZ00281 80 WDDMEKIWHHTFYNELRVAPEE-HPVLLTEAPLNPKANREKMTQIMFETFN--TPAMYVAIQAVLSLYA--SGRTTGIVM 154 (376)
T ss_pred HHHHHHHHHHHHHhhccCCCcc-CeEEEecCCCCcHHHHHHHHHHHhcccC--CceeEeeccHHHHHHh--cCCceEEEE
Confidence 344445555544 233444433 3455655655656667788888888888 55 7899999999875 356789999
Q ss_pred EEcccceeeeeccCCceE
Q 017527 152 IAGTGTIAYGFTEDGRDA 169 (370)
Q Consensus 152 ~~GTGi~g~gii~dG~l~ 169 (370)
-+|.+..-.-=+.||...
T Consensus 155 DiG~~~t~v~PV~dG~~~ 172 (376)
T PTZ00281 155 DSGDGVSHTVPIYEGYAL 172 (376)
T ss_pred ECCCceEEEEEEEecccc
Confidence 999997433335788764
No 149
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=71.77 E-value=1.5e+02 Score=31.79 Aligned_cols=64 Identities=19% Similarity=0.085 Sum_probs=41.4
Q ss_pred cCcceEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhcC--C-CCCeEEEEEcccce
Q 017527 93 SAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTM--G-KLHGCVLIAGTGTI 158 (370)
Q Consensus 93 ~~v~~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~~--g-~~~~v~l~~GTGi~ 158 (370)
..+..+.|+||-.-+...+..+++..+.. +. ..+.+.|+..||+++-.. . ....+++=+|.|+-
T Consensus 147 ~~v~~~VITVPa~f~~~qR~a~~~Aa~~A-Gl-~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~ 213 (616)
T PRK05183 147 GELDGAVITVPAYFDDAQRQATKDAARLA-GL-NVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTF 213 (616)
T ss_pred CCcceEEEEECCCCCHHHHHHHHHHHHHc-CC-CeEEEecchHHHHHHhhcccCCCCEEEEEECCCCeE
Confidence 35778899999986655555666665544 42 356899999998875221 1 23455666777754
No 150
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=69.17 E-value=15 Score=31.67 Aligned_cols=56 Identities=14% Similarity=0.135 Sum_probs=35.2
Q ss_pred EEEEEcCccceEEEEEeCCCCCCCCCCCC---CeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCC
Q 017527 24 ILGLDGGTTSTVCICMPVISMSDSLPDPL---PVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGS 90 (370)
Q Consensus 24 vlGVDiGgT~i~~~l~d~~~~~~~~~~~g---~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~ 90 (370)
+||||-|-+++-+++++. ++ +.+......++.. .+..+-+..|.+.+.+++++...
T Consensus 1 ILGIDPgl~~tG~avi~~---------~~~~~~~i~~G~I~t~~~--~~~~~Rl~~I~~~l~~li~~~~P 59 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEE---------DGGKLRLIDYGTIKTSSK--DSLPERLKEIYEELEELIEEYNP 59 (149)
T ss_dssp EEEEE--SSEEEEEEEEE---------ETTEEEEEEEEEEE---S----HHHHHHHHHHHHHHHHHHH--
T ss_pred CEEECCCCCCeeEEEEEe---------eCCEEEEEEeCeEECCCC--CCHHHHHHHHHHHHHHHHHhhCC
Confidence 699999999999999987 33 3444444444432 24566677888888888887654
No 151
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=66.41 E-value=41 Score=29.57 Aligned_cols=57 Identities=16% Similarity=0.109 Sum_probs=39.1
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCC---eEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCC
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLP---VLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGS 90 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~---il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~ 90 (370)
.+||||-|-+++=+++++. +++ ++......++.. .+...-+..|.+.+.++++++..
T Consensus 3 ~iLGIDPgl~~tG~avi~~---------~~~~~~~~~~G~i~t~~~--~~~~~Rl~~I~~~l~~~i~~~~P 62 (164)
T PRK00039 3 RILGIDPGLRRTGYGVIEV---------EGRRLSYVASGVIRTPSD--LDLPERLKQIYDGLSELIDEYQP 62 (164)
T ss_pred EEEEEccccCceeEEEEEe---------cCCeEEEEEeeEEECCCC--CCHHHHHHHHHHHHHHHHHHhCC
Confidence 6999999999999999987 454 233333333322 24455577788888888887643
No 152
>PTZ00280 Actin-related protein 3; Provisional
Probab=66.14 E-value=48 Score=33.35 Aligned_cols=72 Identities=25% Similarity=0.322 Sum_probs=53.0
Q ss_pred eEEEeecCCCChhhHHHHHHHHHhhCCCCce-EEEeChHHHHHHhhcC--------CCCCeEEEEEcccceeeeeccCCc
Q 017527 97 AVCLAVSGVNHPTDQQRILNWLRDIFPGNVR-LYVHNDALAALASGTM--------GKLHGCVLIAGTGTIAYGFTEDGR 167 (370)
Q Consensus 97 ~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~p-V~V~NDa~aa~~g~~~--------g~~~~v~l~~GTGi~g~gii~dG~ 167 (370)
.+-+..|-...+..+..+.+.|=+.|+ .| +++.+++.+++++.+. |..++++|-+|.|..-.--+.+|.
T Consensus 104 ~vllte~~~~~~~~Re~l~e~lFE~~~--~p~i~~~~~~~lslya~~~~~~~~~~~g~~tglVVDiG~~~T~i~PV~~G~ 181 (414)
T PTZ00280 104 YFILTEPPMNPPENREYTAEIMFETFN--VKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVVDGY 181 (414)
T ss_pred ceEEeeCCCCcHHHHHHHHHHHhhccC--CCeEEEecCHHHhHhhhcccccccccCCceeEEEEECCCCceEEEEEECCE
Confidence 455666766666667788888888887 55 7899999999886421 566889999999974444456887
Q ss_pred eEe
Q 017527 168 DAR 170 (370)
Q Consensus 168 l~~ 170 (370)
+..
T Consensus 182 ~l~ 184 (414)
T PTZ00280 182 VIG 184 (414)
T ss_pred Ecc
Confidence 643
No 153
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=65.45 E-value=34 Score=29.56 Aligned_cols=58 Identities=21% Similarity=0.142 Sum_probs=37.6
Q ss_pred EEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcC
Q 017527 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSG 89 (370)
Q Consensus 24 vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~ 89 (370)
+||||-|-+++=+++++.. +..-+++......++.. .+..+-+..|.+.+.+++.+..
T Consensus 2 ILGIDPGl~~~G~av~~~~------~~~~~~~~~g~i~t~~~--~~~~~rl~~I~~~l~~~i~~~~ 59 (154)
T cd00529 2 ILGIDPGSRNTGYGVIEQE------GRKLIYLASGVIRTSSD--APLPSRLKTIYDGLNEVIDQFQ 59 (154)
T ss_pred EEEEccCcCceEEEEEEee------CCeEEEEEeeEEECCCC--CCHHHHHHHHHHHHHHHHHHhC
Confidence 7999999999999999861 00122333334434322 2445557778888888887764
No 154
>PRK13327 pantothenate kinase; Reviewed
Probab=65.32 E-value=1.2e+02 Score=28.49 Aligned_cols=113 Identities=22% Similarity=0.122 Sum_probs=58.6
Q ss_pred EEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEeecC
Q 017527 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSG 104 (370)
Q Consensus 25 lGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgvpG 104 (370)
+-||+|-|.+|+++++. +++...... .. + ......+ + ..+.. .+..+.++ .
T Consensus 4 ~liD~GNSriKwa~~~~----------~~~~~~~~~---~~---~-~~~~~~~-----~-~~~~~----~~~~v~is--S 54 (242)
T PRK13327 4 WLFDLGNSRFKYAPLHG----------GRAGDVQAW---AH---G-AEAMDAA-----A-LAALP----SGRVAYVA--S 54 (242)
T ss_pred eeEEcCcchhheEEecC----------Ccccccccc---cc---c-hhhhhhh-----H-HhhCC----CCCeEEEE--e
Confidence 56899999999999985 444422111 11 1 1111111 1 22221 12333332 3
Q ss_pred CCChhhHHHHHHHHHhhCCCCceEEEe-------------------ChHHHHHHhhcCCCCCeEEEEEcccceeeeeccC
Q 017527 105 VNHPTDQQRILNWLRDIFPGNVRLYVH-------------------NDALAALASGTMGKLHGCVLIAGTGTIAYGFTED 165 (370)
Q Consensus 105 ~~~~~~~~~l~~~L~~~f~~~~pV~V~-------------------NDa~aa~~g~~~g~~~~v~l~~GTGi~g~gii~d 165 (370)
+..|+....+.+.|++.|+ .+.++. -|=.++++++.+ ..+.++|-+||=+---.+..|
T Consensus 55 Va~p~~~~~l~~~l~~~~~--~~~~~~~~~~~~gv~n~Y~~P~~LG~DR~~a~vaA~~-~~~~lVVD~GTA~TiD~v~~~ 131 (242)
T PRK13327 55 VAAPALTQRVLACLQERFE--QVRVVRTAAACAGVRIAYADPSRFGVDRFLALLGARG-DAPVLVVGVGTALTIDLLGAD 131 (242)
T ss_pred ccChhhHHHHHHHHHHHhC--CCcEEECCCccCCceecCCChhhccHHHHHHHHHhhc-CCCEEEEEcCCceEEEEECCC
Confidence 3234455667777777665 222222 233344555544 467889999998744434456
Q ss_pred CceE
Q 017527 166 GRDA 169 (370)
Q Consensus 166 G~l~ 169 (370)
|+..
T Consensus 132 g~~l 135 (242)
T PRK13327 132 GLHH 135 (242)
T ss_pred CeEE
Confidence 6554
No 155
>COG2183 Tex Transcriptional accessory protein [Transcription]
Probab=64.98 E-value=24 Score=38.39 Aligned_cols=99 Identities=16% Similarity=0.121 Sum_probs=60.0
Q ss_pred CcEEEEEEcCccc-eEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEE
Q 017527 21 REVILGLDGGTTS-TVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVC 99 (370)
Q Consensus 21 ~~~vlGVDiGgT~-i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~Ig 99 (370)
+..++|+|-|.-. ++++++|. .|+.+...+.-+..+. ...+.+.+.|..++ ..+++ ++.+||
T Consensus 329 ~~~~lglDPg~rtG~k~Avvd~---------tGk~l~~~~Iyp~~p~-~~~~~~~~~l~~l~----~~~~V---e~iaIG 391 (780)
T COG2183 329 PKATLGLDPGFRTGCKVAVVDD---------TGKLLDTATIYPHPPV-NQSDKAEATLKDLI----RKYKV---ELIAIG 391 (780)
T ss_pred CcceeecCCccccccEEEEEcC---------CCceeceeEEEcCCCc-cchHHHHHHHHHHH----HHhCc---eEEEEe
Confidence 4589999998544 78999998 8999987755443332 12455555555544 44443 456677
Q ss_pred EeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHH
Q 017527 100 LAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALA 139 (370)
Q Consensus 100 IgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~ 139 (370)
.|.+.... ..-+.+.|.+.-+..++..|.|++-|...
T Consensus 392 ngTaSret---e~fv~~vl~~~~~~~~~~viVsEagAsvY 428 (780)
T COG2183 392 NGTASRET---EKFVADVLKELPKEKVLKVIVSEAGASVY 428 (780)
T ss_pred cCCcchhH---HHHHHHHHHhccCCCCcEEEEcccccchh
Confidence 76655433 23334555443111267888999887644
No 156
>PRK13329 pantothenate kinase; Reviewed
Probab=64.02 E-value=1.3e+02 Score=28.27 Aligned_cols=18 Identities=22% Similarity=0.154 Sum_probs=16.7
Q ss_pred EEEEEEcCccceEEEEEe
Q 017527 23 VILGLDGGTTSTVCICMP 40 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d 40 (370)
++|-||+|-|.+|+++++
T Consensus 2 m~LliD~GNTriKw~~~~ 19 (249)
T PRK13329 2 TFLAIDVGNTRLKWGLYD 19 (249)
T ss_pred CEEEEEcCcchheeeEec
Confidence 378899999999999998
No 157
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=59.04 E-value=49 Score=28.31 Aligned_cols=31 Identities=29% Similarity=0.349 Sum_probs=24.8
Q ss_pred CCcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEe
Q 017527 20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAA 60 (370)
Q Consensus 20 ~~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~ 60 (370)
....++|||=|.| +-++++|+ +|+++.....
T Consensus 30 ~~~lIVGiDPG~t-tgiAildL---------~G~~l~l~S~ 60 (138)
T PF04312_consen 30 RRYLIVGIDPGTT-TGIAILDL---------DGELLDLKSS 60 (138)
T ss_pred CCCEEEEECCCce-eEEEEEec---------CCcEEEEEee
Confidence 3568999999854 67899999 8999987653
No 158
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=54.72 E-value=23 Score=32.74 Aligned_cols=53 Identities=25% Similarity=0.360 Sum_probs=40.1
Q ss_pred CHHHHHHHHHHHHHHHHHHcCCCccCcceEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHH
Q 017527 69 GEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAA 137 (370)
Q Consensus 69 ~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa 137 (370)
+++.+-..+...+++.+++ +...+|++|++|..+ |.+.|++.|+ +||. |...|
T Consensus 154 ~~~~~~~~l~~~~~~a~~e-----dgAeaIiLGCAGms~------la~~Lq~~~g--vPVI---Dgv~A 206 (230)
T COG4126 154 PPEEAEALLVIEAAEALKE-----DGAEAIILGCAGMSD------LADQLQKAFG--VPVI---DGVAA 206 (230)
T ss_pred ChHHHHHHHHHHHHHHhhh-----cCCCEEEEcCccHHH------HHHHHHHHhC--CCcc---cchHH
Confidence 4677777777788888776 456789999999863 5888999998 8985 54443
No 159
>COG3734 DgoK 2-keto-3-deoxy-galactonokinase [Carbohydrate transport and metabolism]
Probab=50.22 E-value=26 Score=33.72 Aligned_cols=31 Identities=23% Similarity=0.153 Sum_probs=27.6
Q ss_pred cEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEec
Q 017527 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG 61 (370)
Q Consensus 22 ~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~ 61 (370)
.++|.+|-|+|++|+-+++. +|+++.+.+..
T Consensus 5 ~~~i~iDWGTT~~R~wL~~~---------dg~~l~~r~~~ 35 (306)
T COG3734 5 PAYIAIDWGTTNLRAWLVRG---------DGAVLAERRSE 35 (306)
T ss_pred ceEEEEecCCccEEEEEEcC---------Ccceeeeeccc
Confidence 58999999999999999998 89999887654
No 160
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=49.95 E-value=1.7e+02 Score=28.35 Aligned_cols=28 Identities=18% Similarity=-0.012 Sum_probs=23.3
Q ss_pred EEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEec
Q 017527 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG 61 (370)
Q Consensus 24 vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~ 61 (370)
++-||+|+..+.+.++.. |.++.....+
T Consensus 190 ~~lvdiG~~~t~l~i~~~----------g~~~~~r~i~ 217 (348)
T TIGR01175 190 AALVDIGATSSTLNLLHP----------GRMLFTREVP 217 (348)
T ss_pred EEEEEECCCcEEEEEEEC----------CeEEEEEEee
Confidence 889999999999999986 7777666554
No 161
>TIGR01129 secD protein-export membrane protein SecD. SecD from Mycobacterium tuberculosis has a long Pro-rich insert.
Probab=49.32 E-value=51 Score=33.31 Aligned_cols=73 Identities=19% Similarity=0.232 Sum_probs=46.2
Q ss_pred EEEEc-CccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCc-----ceE
Q 017527 25 LGLDG-GTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAV-----RAV 98 (370)
Q Consensus 25 lGVDi-GgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v-----~~I 98 (370)
+|+|+ ||+.+.+-+-+. +|-.+.-...... .-.++.+++..+.+++=+++.|+....| ..|
T Consensus 1 lGlDl~GG~~~~~~~~~~---------~~~~~~~~~~~~~----~~~~~~~~~~~~ii~~Rv~~~Gv~e~~i~~~G~~~I 67 (397)
T TIGR01129 1 LGLDLRGGARVLLEVDMS---------TAVVLKLSEAEVN----AIRKDALEQVITILRNRVNALGVSEPVVQRQGKDRI 67 (397)
T ss_pred CcccCCCCeEEEEEEcCC---------cccccccchhccc----cccHHHHHHHHHHHHHHHhhcCCCCcEEEEeCCceE
Confidence 58899 999987665543 2211111111111 1235678888899999898888775444 357
Q ss_pred EEeecCCCChhh
Q 017527 99 CLAVSGVNHPTD 110 (370)
Q Consensus 99 gIgvpG~~~~~~ 110 (370)
-|-+||+.|++.
T Consensus 68 ~V~lPg~~d~~~ 79 (397)
T TIGR01129 68 VVELPGVTDTSR 79 (397)
T ss_pred EEECCCCCCHHH
Confidence 799999987653
No 162
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=48.49 E-value=87 Score=32.81 Aligned_cols=43 Identities=19% Similarity=0.287 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccc
Q 017527 257 KILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRW 303 (370)
Q Consensus 257 ~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~ 303 (370)
.++......++.+..+|+..+.- .+-.=+.|.+.||+ ..++.+
T Consensus 405 ~lY~a~l~a~A~GtR~Iie~~~~---~g~~Id~l~~sGG~-~KN~ll 447 (544)
T COG1069 405 LLYRALLEATAFGTRAIIETFED---QGIAIDTLFASGGI-RKNPLL 447 (544)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHH---cCCeeeEEEecCCc-ccCHHH
Confidence 67888889999999999999983 33445789999999 455554
No 163
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=48.09 E-value=40 Score=35.05 Aligned_cols=65 Identities=17% Similarity=0.128 Sum_probs=42.7
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccC---------------------HHHHHHHHHH
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVG---------------------EDAARETIEK 79 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~---------------------~~~~~~~l~~ 79 (370)
..|=+++|+|.|.+++.++|+. +|+++.... +.|++-.+ .-+++++|..
T Consensus 163 ~~YGvAvDlGTS~i~aqlVDL~--------sgevv~t~~--T~n~ql~~Ge~m~sr~~~i~~~~D~a~~l~~~vVe~i~~ 232 (614)
T COG3894 163 EAYGVAVDLGTSGIRAQLVDLK--------SGEVVATVI--TSNPQLPGGEVMDSRDFAIMMGPDGAEGLQIAVVEAINQ 232 (614)
T ss_pred eeeeeEEecccceeeeEEEecc--------CCcEEEeee--ccCCCCCCchhhHHHHHHHHhCcchhhhhHHHHHHHHHH
Confidence 3488999999999999999993 688876542 33332111 1235666777
Q ss_pred HHHHHHHHcCCCccCc
Q 017527 80 VMADALLKSGSNRSAV 95 (370)
Q Consensus 80 ~i~~~l~~~~~~~~~v 95 (370)
.+.+.+++..+.+.+|
T Consensus 233 ~id~~~~e~~V~~n~I 248 (614)
T COG3894 233 LIDKLCEEGEVCGNPI 248 (614)
T ss_pred HHhhhchhccccccch
Confidence 7777777666544443
No 164
>TIGR00228 ruvC crossover junction endodeoxyribonuclease RuvC. Endonuclease that resolves Holliday junction intermediates in genetic recombination. The active form of the protein is a dimer. Structure studies reveals that the catalytic center, comprised of four acidic residues, lies at the bottom of a cleft that fits a DNA duplex. The model hits a single Synechocystis PCC6803 protein at a score of 30, below the trusted cutoff, that appears orthologous and may act as authentic RuvC.
Probab=47.82 E-value=69 Score=28.02 Aligned_cols=55 Identities=15% Similarity=0.048 Sum_probs=37.8
Q ss_pred EEEEEcCccceEEEEEeCCCCCCCCCCCCC---eEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCC
Q 017527 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLP---VLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGS 90 (370)
Q Consensus 24 vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~---il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~ 90 (370)
+||||=|-+.+=+++++. .+. .+......++. .+..+-+..|.+.+.+++++...
T Consensus 1 ILGIDPGl~~tG~gvi~~---------~~~~~~~v~~G~I~t~~---~~~~~RL~~I~~~l~~~i~~y~P 58 (156)
T TIGR00228 1 ILGIDPGSRVTGYGVIRQ---------VGRQLSYLGSGCIRTKV---DDLPSRLKLIYAGVTEIITQFQP 58 (156)
T ss_pred CEeECcccccccEEEEEe---------cCCeEEEEEeeEEECCC---CCHHHHHHHHHHHHHHHHHHhCC
Confidence 589999999999999986 333 33333443432 24556677788888888877654
No 165
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=47.34 E-value=78 Score=32.14 Aligned_cols=102 Identities=16% Similarity=0.177 Sum_probs=56.5
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCC--CCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceE
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSD--SLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAV 98 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~--~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~I 98 (370)
..|.|-||-|.|.+|+=+...+...+ +.-...++....+-+.+... .+|++....|..+++.+.+.......+..-|
T Consensus 66 ~~Y~iiiDAGSTGsRvHvY~F~~~~~~~~p~le~E~F~~~kPGLSsfa-ddp~~aA~Sl~~LLd~A~~~vP~~~~~kTPi 144 (453)
T KOG1385|consen 66 RQYAIIIDAGSTGTRVHVYKFDQCLPGMPPELEHELFKEVKPGLSSFA-DDPEEAANSLRPLLDVAEAFVPREHWKKTPI 144 (453)
T ss_pred eEEEEEEecCCCcceEEEEEeccCCCCCCchhHHHHHhhcCCcccccC-CChHHHHHhHHHHHHHHHhhCCHhHhccCce
Confidence 45999999999999987765532111 00012333344443444443 4688888888888888776543322333334
Q ss_pred EE-eecCC-CCh-hhHHHHHHHHHhhCC
Q 017527 99 CL-AVSGV-NHP-TDQQRILNWLRDIFP 123 (370)
Q Consensus 99 gI-gvpG~-~~~-~~~~~l~~~L~~~f~ 123 (370)
.+ +.+|. .-+ +.-..+.+.+++.|.
T Consensus 145 ~lkATAGLRlL~~~ka~~IL~aVre~l~ 172 (453)
T KOG1385|consen 145 VLKATAGLRLLPGSKADNILQAVRELLK 172 (453)
T ss_pred EEEeecccccCChhHHHHHHHHHHHHHh
Confidence 44 45776 222 223445555555543
No 166
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=45.06 E-value=52 Score=27.43 Aligned_cols=30 Identities=13% Similarity=0.050 Sum_probs=24.3
Q ss_pred EEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecC
Q 017527 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGC 62 (370)
Q Consensus 24 vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~ 62 (370)
++|||++-.+..+.+++. .|++....+...
T Consensus 1 ~vGiDv~k~~~~v~v~~~---------~~~~~~~~~~~~ 30 (144)
T PF01548_consen 1 FVGIDVSKDTHDVCVIDP---------NGEKLRRFKFEN 30 (144)
T ss_pred eEEEEcccCeEEEEEEcC---------CCcEEEEEEEec
Confidence 689999999999999998 677776666543
No 167
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=41.75 E-value=1e+02 Score=31.26 Aligned_cols=35 Identities=31% Similarity=0.404 Sum_probs=30.0
Q ss_pred cEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecC-CCc
Q 017527 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGC-SNH 65 (370)
Q Consensus 22 ~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~-~n~ 65 (370)
.|++|||+|+|+++++++|. +++++.+...++ .|+
T Consensus 2 ~y~lGIDIGSTsTKaVVmd~---------~g~Il~~~i~pTG~np 37 (432)
T TIGR02259 2 ECFVGIDLGSTTTKAVLMDD---------KGEVIGRGITNSRSNY 37 (432)
T ss_pred ceEEEEEcCchhEEEEEEcC---------CCcEEEEEecCCCCCh
Confidence 48999999999999999998 678998888776 444
No 168
>PRK13325 bifunctional biotin--[acetyl-CoA-carboxylase] ligase/pantothenate kinase; Reviewed
Probab=41.59 E-value=3.3e+02 Score=29.13 Aligned_cols=21 Identities=29% Similarity=0.300 Sum_probs=19.1
Q ss_pred CcEEEEEEcCccceEEEEEeC
Q 017527 21 REVILGLDGGTTSTVCICMPV 41 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~ 41 (370)
+.++|-||+|-|.+|+++++.
T Consensus 337 ~~~~LliD~GNTriKwa~~~~ 357 (592)
T PRK13325 337 SERFLLLDGGNSRLKWAWVEN 357 (592)
T ss_pred CceEEEEEcCcCceeEEEEcC
Confidence 568999999999999999986
No 169
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=38.03 E-value=3.5e+02 Score=25.50 Aligned_cols=122 Identities=17% Similarity=0.207 Sum_probs=75.1
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEE--ecCCCccc----cCHHHHHHHHHHHHHHHHHHcCCCccCcc
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAA--AGCSNHNS----VGEDAARETIEKVMADALLKSGSNRSAVR 96 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~--~~~~n~~~----~~~~~~~~~l~~~i~~~l~~~~~~~~~v~ 96 (370)
..+|+++...|+-++++.. +++++-.+ ..++.-.. .+..--.+.+..++++.+++++++.++|.
T Consensus 3 ialG~EGSANKlGvGiv~~----------~~iLaN~R~TYitPPG~GFlP~~TA~HHr~~il~Lv~~al~ea~v~~~diD 72 (336)
T KOG2708|consen 3 IALGLEGSANKLGVGIVRD----------GKILANPRHTYITPPGEGFLPRDTARHHRAWILGLVKQALEEAGVTSDDID 72 (336)
T ss_pred eEEecccccccceeeEEec----------ceeecCccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHcCCChhhCC
Confidence 5789999999999999976 78886432 22221111 12333466788999999999999999999
Q ss_pred eEEEee-cCCCChhhHHH-HHHHHHhhCCCCceEEEeChHHHHH-Hhh-cCCCCCeEEEEEccc
Q 017527 97 AVCLAV-SGVNHPTDQQR-ILNWLRDIFPGNVRLYVHNDALAAL-ASG-TMGKLHGCVLIAGTG 156 (370)
Q Consensus 97 ~IgIgv-pG~~~~~~~~~-l~~~L~~~f~~~~pV~V~NDa~aa~-~g~-~~g~~~~v~l~~GTG 156 (370)
.||..= ||...|-.-.. ....|....+ .|+.-.|-...-. +|. .-|..|-+++-+..|
T Consensus 73 ~icyTKGPGmgaPL~~vaivaRtlsllw~--kPlv~VNHCigHIEMGR~iTgA~nPvvLYvSGG 134 (336)
T KOG2708|consen 73 CICYTKGPGMGAPLSVVAIVARTLSLLWN--KPLVGVNHCIGHIEMGREITGAQNPVVLYVSGG 134 (336)
T ss_pred EEEEcCCCCCCCchhhHHHHHHHHHHHhC--CCcccchhhhhhhhhcceeccCCCCEEEEEeCC
Confidence 988753 55555533333 3334443343 7877777665321 121 135556665555434
No 170
>PF07736 CM_1: Chorismate mutase type I; InterPro: IPR008243 Chorismate mutase (CM; 5.4.99.5 from EC) catalyses the reaction at the branch point of the biosynthetic pathway leading to the three aromatic amino acids, phenylalanine, tryptophan and tyrosine (chorismic acid is the last common intermediate, and CM leads to the L-phenylalanine/L-tyrosine branch). It is part of the shikimate pathway, which is present only in bacteria, fungi and plants. This entry represents a family of monofunctional (non-fused) chorismate mutases from Gram-positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus). They are monofunctional, homotrimeric, nonallosteric enzymes and are not regulated by the end-product aromatic amino acids. The three types of CM are AroQ class, Prokaryotic type (e.g., IPR008239 from INTERPRO amongst others); AroQ class, Eukaryotic type (IPR008238 from INTERPRO); and AroH class. They fall into two structural folds (AroQ class and AroH class) which are completely unrelated []. The two types of the AroQ structural class (the Escherichia coli CM dimer and the yeast CM monomer) can be structurally superimposed, and the topology of the four-helix bundle forming the active site is conserved []. For additional information please see [, , , , , , ].; PDB: 2CHS_K 2CHT_L 1COM_J 1FNJ_A 1FNK_A 1DBF_C 1UI9_A 1ODE_A 1UFY_A 1XHO_C ....
Probab=37.29 E-value=1.2e+02 Score=25.18 Aligned_cols=64 Identities=9% Similarity=0.068 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHHHHHHHcCCCccCcceEEEeecCCCChhhHHHHHHHHHhhCCC-CceEEEeChHH
Q 017527 69 GEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPG-NVRLYVHNDAL 135 (370)
Q Consensus 69 ~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgvpG~~~~~~~~~l~~~L~~~f~~-~~pV~V~NDa~ 135 (370)
+++++.+...+++.+++++.++.+++|.+|-+++..=.+... | ...+++.+++ ++|++-.....
T Consensus 14 ~~e~I~~at~eLl~~i~~~N~l~~~dIvSi~FT~T~DL~a~f--P-A~a~R~~~g~~~Vpl~c~~E~~ 78 (118)
T PF07736_consen 14 TPEEILEATRELLEEILERNELSPEDIVSIIFTVTPDLDAAF--P-AAAARELPGWDDVPLMCAQEMD 78 (118)
T ss_dssp SHHHHHHHHHHHHHHHHHHTT--GGGEEEEEEEE-TT--SS---T-CHHHHHTTTGTTSEEEEEE---
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEeCCCcCccC--h-HHHHHccCCCCccceeccCcCC
Confidence 689999999999999999999999999999998754322111 1 1223333332 37877655443
No 171
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=35.76 E-value=2.5e+02 Score=26.43 Aligned_cols=94 Identities=15% Similarity=0.192 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHH---HHHcCCCccCcceEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHH---hh--c
Q 017527 71 DAARETIEKVMADA---LLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALA---SG--T 142 (370)
Q Consensus 71 ~~~~~~l~~~i~~~---l~~~~~~~~~v~~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~---g~--~ 142 (370)
++.++.+.++++++ +++.++ +++ .+++.+.+=+..+...+.+.+++.++ .++.|.+...=|.+ |. .
T Consensus 34 ~e~i~r~~~~L~~f~~~~~~~~v--~~i--~~vATsA~R~A~N~~~~~~~i~~~tG--i~i~iIsgeeEa~l~~~gv~~~ 107 (285)
T PF02541_consen 34 EEAIERAIDALKRFKEILKDYGV--EKI--RAVATSALREAKNSDEFLDRIKKETG--IDIEIISGEEEARLSFLGVLSS 107 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTG--SEE--EEEEEHHHHHSTTHHHHHHHHHHHHS--S-EEEE-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCC--CEE--EEEhhHHHHhCcCHHHHHHHHHHHhC--CceEEecHHHHHHHHHHHHHhh
Confidence 44566666666664 444444 233 35667776445567789999999998 88888877653322 22 2
Q ss_pred C-CCCCeEEEEEcccceeeeeccCCceEe
Q 017527 143 M-GKLHGCVLIAGTGTIAYGFTEDGRDAR 170 (370)
Q Consensus 143 ~-g~~~~v~l~~GTGi~g~gii~dG~l~~ 170 (370)
. ...+++++=+|.|+.-..+..+|++..
T Consensus 108 l~~~~~~lviDIGGGStEl~~~~~~~~~~ 136 (285)
T PF02541_consen 108 LPPDKNGLVIDIGGGSTELILFENGKVVF 136 (285)
T ss_dssp STTTSSEEEEEEESSEEEEEEEETTEEEE
T ss_pred ccccCCEEEEEECCCceEEEEEECCeeeE
Confidence 3 567889999999997776666777643
No 172
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=33.81 E-value=37 Score=36.28 Aligned_cols=24 Identities=29% Similarity=0.270 Sum_probs=0.0
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCe
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPV 54 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~i 54 (370)
++.+||||+|.|++.+++++. |.+
T Consensus 1 m~~viGIDlGTt~s~va~~~~----------g~~ 24 (627)
T PRK00290 1 MGKIIGIDLGTTNSCVAVMEG----------GEP 24 (627)
T ss_pred CCcEEEEEeCcccEEEEEEEC----------CEE
No 173
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=33.20 E-value=1.4e+02 Score=30.92 Aligned_cols=51 Identities=20% Similarity=0.042 Sum_probs=32.5
Q ss_pred EEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHH-HHHHHHHHHHHcC
Q 017527 27 LDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARET-IEKVMADALLKSG 89 (370)
Q Consensus 27 VDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~-l~~~i~~~l~~~~ 89 (370)
+|+|.|.|++.++|.+ +++++...+..++- ..+.+..- +..+++++.++.+
T Consensus 1 ~DiGST~Tk~~a~~~~--------~~~~~~~~~~~tpT----t~~dv~~G~~~~a~~~l~~~~~ 52 (463)
T TIGR01319 1 LDFGSTWTKAAAFDIE--------GDAILATAHDITPI----ESDHLAGGFFNKANEKLNEDLA 52 (463)
T ss_pred CCccccceEEEEEecC--------CCcEEEEEeccCcc----chhhhhcchHHHHHHHHHHhcC
Confidence 5999999999999862 46677666655421 12344444 5566666665544
No 174
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=33.09 E-value=38 Score=32.49 Aligned_cols=19 Identities=21% Similarity=0.076 Sum_probs=15.4
Q ss_pred EEEEEEcCccceEEEEEeC
Q 017527 23 VILGLDGGTTSTVCICMPV 41 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~ 41 (370)
-.|.+|+|||.+.++++..
T Consensus 78 ~~i~vDmGGTTtDi~~i~~ 96 (290)
T PF01968_consen 78 NAIVVDMGGTTTDIALIKD 96 (290)
T ss_dssp SEEEEEE-SS-EEEEEEET
T ss_pred CEEEEeCCCCEEEEEEEEC
Confidence 4899999999999999975
No 175
>PF05035 DGOK: 2-keto-3-deoxy-galactonokinase; InterPro: IPR007729 2-keto-3-deoxy-galactonokinase 2.7.1.58 from EC is a bacterial transferase that catalyses the second step in D-galactonate degradation. ATP + 2-dehydro-3-deoxy-D-galactonate = ADP + 2-dehydro-3-deoxy-D-galactonate 6-phosphate D-Galactonate is catabolized in saprophytic mycobacteria to give pyruvate and glyceraldehyde-3-phosphate by a pathway that involves galactonate dehydratase, 2-keto-3-deoxy-galactonate kinase, and 6-phospho-2-keto-3-deoxy-galactonate aldolase [].; PDB: 3R1X_D 3T69_B.
Probab=31.79 E-value=29 Score=33.47 Aligned_cols=127 Identities=17% Similarity=0.189 Sum_probs=58.1
Q ss_pred EcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEeecCCCC
Q 017527 28 DGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNH 107 (370)
Q Consensus 28 DiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgvpG~~~ 107 (370)
|-|+|++|+-++|. +|+++.+.+.+.--. ....+..-+.+.+++.+.+.. ..+--|.-|..|-..
T Consensus 1 DWGTSnlR~~l~~~---------~g~vl~~~~~~~Gi~-~~~~~~f~~~l~~~~~~w~~~-----~~~pvi~~GMigS~~ 65 (287)
T PF05035_consen 1 DWGTSNLRAWLMDE---------DGQVLAERSSPVGIL-NLAPDGFEAVLRELLGDWLAA-----PPLPVIASGMIGSRQ 65 (287)
T ss_dssp EE-SS-EEEEEE-C---------TTEEEEEEEES--CC-HHCCH-HCHHHHHHCCCTT-S-----TT--EEEECGGGSTT
T ss_pred CCchhhhhhheecC---------CCcEEeeecCCcChh-hcCcccHHHHHHHHHHHHhhc-----CCCeEEEeCCccccc
Confidence 78999999999998 799999887543211 122333444455555554442 123334444444321
Q ss_pred ----------hhhHHHHHHHHHhhCCCCceEEEeC---------hH----HHHHHhhc--CCCCCeEEEEEcccceeeee
Q 017527 108 ----------PTDQQRILNWLRDIFPGNVRLYVHN---------DA----LAALASGT--MGKLHGCVLIAGTGTIAYGF 162 (370)
Q Consensus 108 ----------~~~~~~l~~~L~~~f~~~~pV~V~N---------Da----~aa~~g~~--~g~~~~v~l~~GTGi~g~gi 162 (370)
|-.-..|...+...-....||++.- |+ ..-++|-. ....+++++.-||=+ =-..
T Consensus 66 Gw~Eapy~~~Pa~l~~la~~~~~~~~~~~~v~ivPGl~~~~~~~DVMRGEEtqi~G~l~~~~~~~~~i~LPGTHs-KWv~ 144 (287)
T PF05035_consen 66 GWQEAPYLPCPAGLADLAAALVRVADPGRPVHIVPGLKQRQGSPDVMRGEETQIAGALSLNPDGDGLICLPGTHS-KWVR 144 (287)
T ss_dssp SSS---EEESSEECCHCHHC-EEECSSSTTEEE--EEEEETTCCEEESSHHHHHHHHHCCCHSSECEEEE-STTE-EEEE
T ss_pred ccccCCccCCCCChhHHHhhcEEecCCCceEEEEcCcCcCCCCccccccHHHHHHHHHhcCCCCCeEEEccCCCc-eEEE
Confidence 1111123333332211013333321 11 11222211 334688888899987 4446
Q ss_pred ccCCceEe
Q 017527 163 TEDGRDAR 170 (370)
Q Consensus 163 i~dG~l~~ 170 (370)
+.+|++.+
T Consensus 145 v~~g~I~~ 152 (287)
T PF05035_consen 145 VEDGRIVS 152 (287)
T ss_dssp EETTEEEE
T ss_pred ECCCcEEE
Confidence 67888743
No 176
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=30.57 E-value=4.6e+02 Score=26.03 Aligned_cols=98 Identities=13% Similarity=0.092 Sum_probs=56.4
Q ss_pred EEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCcc---------ccC---------------------HHHH
Q 017527 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHN---------SVG---------------------EDAA 73 (370)
Q Consensus 24 vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~---------~~~---------------------~~~~ 73 (370)
++-+|||.|++.+.++-. |+++.....+....+ +.+ ...+
T Consensus 195 vav~~Igat~s~l~vi~~----------gk~ly~r~~~~g~~Qlt~~i~r~~~L~~~~a~~~k~~~~~P~~y~~~vl~~f 264 (354)
T COG4972 195 VAVFDIGATSSELLVIQD----------GKILYTREVPVGTDQLTQEIQRAYSLTEEKAEEIKRGGTLPTDYGSEVLRPF 264 (354)
T ss_pred heeeeecccceEEEEEEC----------CeeeeEeeccCcHHHHHHHHHHHhCCChhHhHHHHhCCCCCCchhHHHHHHH
Confidence 678899999999887765 777766544321100 000 0112
Q ss_pred HHHHHHHHHHHH----HHcCCCccCcceEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHH
Q 017527 74 RETIEKVMADAL----LKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALA 139 (370)
Q Consensus 74 ~~~l~~~i~~~l----~~~~~~~~~v~~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~ 139 (370)
++.|.+-|++.+ +..+ ..+|..|-++=+|.. ...|.+.++++++ .|+.+.|-...+..
T Consensus 265 ~~~l~~ei~Rslqfy~~~s~--~~~id~i~LaGggA~----l~gL~~~i~qrl~--~~t~vanPf~~~~~ 326 (354)
T COG4972 265 LGELTQEIRRSLQFYLSQSE--MVDIDQILLAGGGAS----LEGLAAAIQQRLS--IPTEVANPFAYMAL 326 (354)
T ss_pred HHHHHHHHHHHHHHHHhccc--cceeeEEEEecCCcc----hhhHHHHHHHHhC--CCeEeeCHHHHHhh
Confidence 233333333333 3222 235666666655543 2467888999998 89999998544433
No 177
>COG0817 RuvC Holliday junction resolvasome, endonuclease subunit [DNA replication, recombination, and repair]
Probab=30.25 E-value=1.4e+02 Score=26.31 Aligned_cols=55 Identities=18% Similarity=0.115 Sum_probs=38.3
Q ss_pred EEEEcCccceEEEEEeCCCCCCCCCCCCC---eEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCC
Q 017527 25 LGLDGGTTSTVCICMPVISMSDSLPDPLP---VLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGS 90 (370)
Q Consensus 25 lGVDiGgT~i~~~l~d~~~~~~~~~~~g~---il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~ 90 (370)
||||=|-..+=+++++. .++ .+......++.. .....-+.+|.+.+.++++++..
T Consensus 1 lGIDPGl~~~G~gvI~~---------~~~~l~~v~~G~I~t~~~--~~l~~RL~~l~~~l~~vl~~~~P 58 (160)
T COG0817 1 LGIDPGLRRTGYGVIEV---------EGRQLSYLASGVIRTSSD--APLAERLKQLYDGLSEVLDEYQP 58 (160)
T ss_pred CCcCCCccccceEEEEc---------cCCeEEEEeeeEEecCCC--ccHHHHHHHHHHHHHHHHHHhCC
Confidence 68999999999999987 343 334444444422 24556678888889999987654
No 178
>TIGR01796 CM_mono_aroH monofunctional chorismate mutase, gram positive type, clade 1. This model represents a family of monofunctional (non-fused) chorismate mutases from gram positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus).
Probab=29.35 E-value=90 Score=25.95 Aligned_cols=35 Identities=9% Similarity=0.247 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHHHHHHHHHcCCCccCcceEEEeec
Q 017527 69 GEDAARETIEKVMADALLKSGSNRSAVRAVCLAVS 103 (370)
Q Consensus 69 ~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgvp 103 (370)
+.+++.+...+++.+++++.++.+++|.+|-+++.
T Consensus 14 t~e~I~~at~eLl~~ii~~N~l~~edivSv~FT~T 48 (117)
T TIGR01796 14 EAEEIGEAVAELLTELMERNELTPEDLISVIFTVT 48 (117)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEec
Confidence 68999999999999999999999999999988874
No 179
>cd02185 AroH Chorismate mutase (AroH) is one of at least five chorismate-utilizing enzymes present in microorganisms that catalyze the rearrangement of chorismate to prephenic acid, the first committed step in the biosynthesis of aromatic amino acids. In prokaryotes, chorismate mutase may be fused to prephenate dehydratase, prephenate dehydrogenase, or 3-deoxy-D-arabino-heptulosonat-7-phosphate (DAHP) as part of a bifunctional enzyme. The AroH domain forms a homotrimer with three-fold symmetry.
Probab=29.35 E-value=90 Score=25.95 Aligned_cols=35 Identities=9% Similarity=0.229 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHHHHHHHHHcCCCccCcceEEEeec
Q 017527 69 GEDAARETIEKVMADALLKSGSNRSAVRAVCLAVS 103 (370)
Q Consensus 69 ~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgvp 103 (370)
+.+++.+...+++.+++++.++.+++|.+|-+++.
T Consensus 14 t~e~I~~at~eLl~~i~~~N~l~~edivSv~FT~T 48 (117)
T cd02185 14 TAEEILEATRELLEEIIERNNIKPEDIISVIFTVT 48 (117)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEeC
Confidence 68999999999999999999999999999988874
No 180
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=28.60 E-value=1.4e+02 Score=29.16 Aligned_cols=66 Identities=9% Similarity=0.100 Sum_probs=39.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHH
Q 017527 241 VPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCIL 314 (370)
Q Consensus 241 ~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~ 314 (370)
..++.+.+.. |+.|...|+-.....+..++.+.-. +. ++..|+|.|++.....++++.+.+++.++
T Consensus 225 ~eE~~~~~~~-~e~~~lA~dal~~~vameIasLl~l-~~------~~~~IvLSGs~g~~r~~~~v~~~I~~~L~ 290 (326)
T TIGR03281 225 KEEILNNYNG-DEPGRLALDSLAMSVAMEIASLGLL-DC------KEAGVVLAGSGGTLREPINFSGKIKRVLS 290 (326)
T ss_pred HHHHHHHhcc-ChhHHHHHHHHHHHHHHHHHhheec-cC------CCCcEEEeCcchhccCchHHHHHHHHHhC
Confidence 3567777755 5557777777777777777776655 21 13489999994333222112455555554
No 181
>PF13993 YccJ: YccJ-like protein
Probab=28.42 E-value=48 Score=24.27 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=20.6
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHH
Q 017527 240 LVPVVVSCAEAGDEVANKILQDSVEE 265 (370)
Q Consensus 240 ~~~~v~~~A~~GD~~A~~il~~a~~~ 265 (370)
.+..||+.|......|++||++-...
T Consensus 18 IAeAIFElA~~dE~lAekIWeeGsDe 43 (69)
T PF13993_consen 18 IAEAIFELANNDEVLAEKIWEEGSDE 43 (69)
T ss_pred HHHHHHHHhcccHHHHHHHHHccchH
Confidence 45778999988888999999965443
No 182
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=27.86 E-value=52 Score=34.86 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=0.0
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeE
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVL 55 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il 55 (370)
.+||||+|.|++.+++++. |++.
T Consensus 1 ~viGIDlGtt~s~va~~~~----------g~~~ 23 (595)
T TIGR02350 1 KIIGIDLGTTNSCVAVMEG----------GEPV 23 (595)
T ss_pred CEEEEEeCcccEEEEEEEC----------CEEE
No 183
>COG4401 AroH Chorismate mutase [Amino acid transport and metabolism]
Probab=27.68 E-value=1.6e+02 Score=24.39 Aligned_cols=34 Identities=15% Similarity=0.216 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHHHHHHHHHcCCCccCcceEEEee
Q 017527 69 GEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (370)
Q Consensus 69 ~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgv 102 (370)
+++++++..++++++++.+...+++++..+-+++
T Consensus 16 t~eeI~~at~eLl~~i~~~N~~~pedv~sv~~sv 49 (125)
T COG4401 16 TEEEILDATKELLEEIEEENITDPEDVVSVILSV 49 (125)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCChhheeeEEEEe
Confidence 6899999999999999999988899999888876
No 184
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=27.27 E-value=1.8e+02 Score=31.73 Aligned_cols=61 Identities=16% Similarity=0.174 Sum_probs=33.7
Q ss_pred HHHHHhcCCHH---HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHh
Q 017527 244 VVSCAEAGDEV---ANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILR 315 (370)
Q Consensus 244 v~~~A~~GD~~---A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~ 315 (370)
+.+...+|.+. |..+.+-.++.|...+..+....+ ...|+++|||+.. .. |.+.+.+.+++
T Consensus 621 ii~~l~~g~~~~~IAa~fh~tla~~L~~~a~~~~~~~g--------~~~VvLSGGVfqN-~~--L~~~L~~~L~~ 684 (711)
T TIGR00143 621 FLEDLLVGEDRSKIAHIAHKFVASGLVEIATAIAVPFG--------IHKIVISGGVFYN-RL--LLERLAKYLKG 684 (711)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------CCeEEEeccHHHH-HH--HHHHHHHHHHh
Confidence 34444455422 333333333334444444433334 4689999999964 34 37788887765
No 185
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=27.09 E-value=66 Score=31.52 Aligned_cols=20 Identities=30% Similarity=0.115 Sum_probs=17.7
Q ss_pred cEEEEEEcCccceEEEEEeC
Q 017527 22 EVILGLDGGTTSTVCICMPV 41 (370)
Q Consensus 22 ~~vlGVDiGgT~i~~~l~d~ 41 (370)
+-.|.+|+|||.+.+.++..
T Consensus 128 ~~~I~~DmGGTTtDi~~i~~ 147 (318)
T TIGR03123 128 PECLFVDMGSTTTDIIPIID 147 (318)
T ss_pred CCEEEEEcCccceeeEEecC
Confidence 45899999999999999975
No 186
>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis. G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.
Probab=26.39 E-value=2e+02 Score=27.53 Aligned_cols=73 Identities=12% Similarity=0.096 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHcCCCccCcceEEEeecCCCChhhHHHHHHHHHhhCCC-CceEE----------------------EeCh
Q 017527 77 IEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPG-NVRLY----------------------VHND 133 (370)
Q Consensus 77 l~~~i~~~l~~~~~~~~~v~~IgIgvpG~~~~~~~~~l~~~L~~~f~~-~~pV~----------------------V~ND 133 (370)
|....+++.++++++..++ -+.-+-+.++.....+++.|+..+.. .+||. ++||
T Consensus 105 L~~~y~~~f~~~~~~~~q~---llt~~d~~~~~~~~~~~~~l~~lL~~g~iPVi~~nD~v~~~~~~~~~~~~~~~i~d~D 181 (284)
T cd04256 105 LMALYEAMFTQYGITVAQV---LVTKPDFYDEQTRRNLNGTLEELLRLNIIPIINTNDAVSPPPEPDEDLQGVISIKDND 181 (284)
T ss_pred HHHHHHHHHHHcCCcHHHe---eeeccccccHHHHHHHHHHHHHHHHCCCEEEEeCCCcccccccccccccccccccChH
Confidence 4455566666667665444 24444444443333333444333221 15655 4677
Q ss_pred HHHHHHhhcCCCCCeEEEE
Q 017527 134 ALAALASGTMGKLHGCVLI 152 (370)
Q Consensus 134 a~aa~~g~~~g~~~~v~l~ 152 (370)
..+++++...+.+..++++
T Consensus 182 ~lAa~lA~~l~Ad~Li~lT 200 (284)
T cd04256 182 SLAARLAVELKADLLILLS 200 (284)
T ss_pred HHHHHHHHHcCCCEEEEEe
Confidence 7777777766665444444
No 187
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=26.08 E-value=55 Score=34.36 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=0.0
Q ss_pred EEEEEcCccceEEEEEeCCCCCCCCCCCCCe
Q 017527 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPV 54 (370)
Q Consensus 24 vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~i 54 (370)
+||||+|.|++++++++. +.+
T Consensus 1 viGID~Gt~~~~va~~~~----------~~~ 21 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKN----------GKP 21 (602)
T ss_dssp EEEEEE-SSEEEEEEEET----------TEE
T ss_pred CEEEEeccCCEEEEEEEe----------ccc
No 188
>PRK11678 putative chaperone; Provisional
Probab=25.83 E-value=55 Score=33.63 Aligned_cols=67 Identities=10% Similarity=-0.018 Sum_probs=38.8
Q ss_pred CcceEEEeecCCCC----hhhHH----HHHHHHHhhCCCCceEEEeChHHHHHHhhc--C-CCCCeEEEEEcccceeeee
Q 017527 94 AVRAVCLAVSGVNH----PTDQQ----RILNWLRDIFPGNVRLYVHNDALAALASGT--M-GKLHGCVLIAGTGTIAYGF 162 (370)
Q Consensus 94 ~v~~IgIgvpG~~~----~~~~~----~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~--~-g~~~~v~l~~GTGi~g~gi 162 (370)
.+..+.|++|-.-+ +..+. .+.+..+.. +. ..+.+.|...||+++-. . ..+..+++-+|.|+-=..+
T Consensus 148 ~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~A-G~-~~v~li~EPtAAAl~y~~~~~~~~~vlV~D~GGGT~D~Sv 225 (450)
T PRK11678 148 AITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRA-GF-KDVEFQFEPVAAGLDFEATLTEEKRVLVVDIGGGTTDCSM 225 (450)
T ss_pred CCCcEEEEECCccccCCcchhHHHHHHHHHHHHHHc-CC-CEEEEEcCHHHHHHHhccccCCCCeEEEEEeCCCeEEEEE
Confidence 46778899998632 22221 234444433 32 36789999999888521 1 1245566778877643333
No 189
>PF00195 Chal_sti_synt_N: Chalcone and stilbene synthases, N-terminal domain; InterPro: IPR001099 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2.3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyse the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group [].; GO: 0016746 transferase activity, transferring acyl groups, 0009058 biosynthetic process; PDB: 3EUO_B 3EUT_C 3EUQ_D 3E1H_A 3AWK_A 3AWJ_A 2H84_A 3A5S_A 3A5Q_B 3A5R_A ....
Probab=25.72 E-value=1.8e+02 Score=26.99 Aligned_cols=48 Identities=25% Similarity=0.408 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCCccCcce-EEEeecCCCChhhHHHHHHHH
Q 017527 71 DAARETIEKVMADALLKSGSNRSAVRA-VCLAVSGVNHPTDQQRILNWL 118 (370)
Q Consensus 71 ~~~~~~l~~~i~~~l~~~~~~~~~v~~-IgIgvpG~~~~~~~~~l~~~L 118 (370)
+.+.+...++.++++++.+.++++|.. |.+++.|+..|.-...|.+.|
T Consensus 98 ~~a~~L~~~Aa~~AL~~~g~~~~dIthlv~vs~TG~~~PglD~~l~~~L 146 (226)
T PF00195_consen 98 EEAPPLAEEAARKALAEAGLDPSDITHLVTVSCTGIAAPGLDARLINRL 146 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHTS-GGGECEEEEEESSSSECS-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcccceEEEEecCCcCCCchhHHHHhcC
Confidence 566777888899999999999999987 568888988887655555544
No 190
>TIGR02148 Fibro_Slime fibro-slime domain. This model represents a conserved region of about 90 amino acids, shared in at least 4 distinct large putative proteins from the slime mold Dictyostelium discoideum and 10 proteins from the rumen bacterium Fibrobacter succinogenes, and in no other species so far. We propose here the name fibro-slime domain
Probab=24.71 E-value=45 Score=26.40 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=16.9
Q ss_pred CCcccccccccccCCCcEEEEEEcCccceE
Q 017527 6 NGEIWDFETAEESGGREVILGLDGGTTSTV 35 (370)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~vlGVDiGgT~i~ 35 (370)
..|+|+|=+ -.|.+|+||.+..
T Consensus 27 DDDvWVFIn--------~kLv~DlGG~H~~ 48 (90)
T TIGR02148 27 DDDVWVFIN--------NKLVVDIGGQHPA 48 (90)
T ss_pred CCeEEEEEC--------CEEEEEccCcCCC
Confidence 567788766 3789999999854
No 191
>PF10941 DUF2620: Protein of unknown function DUF2620; InterPro: IPR021238 This is a bacterial family of proteins with unknown function.
Probab=24.20 E-value=2.2e+02 Score=23.67 Aligned_cols=46 Identities=24% Similarity=0.336 Sum_probs=32.4
Q ss_pred HHHHHHHHHhhCCCCceEEEeChHHHHHHhhcCCCCCeEEEEEcccc
Q 017527 111 QQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGT 157 (370)
Q Consensus 111 ~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~~g~~~~v~l~~GTGi 157 (370)
.+.+.+.+++..+....|.|.||-.+|.. -..|..|..+=.+-||-
T Consensus 11 K~ei~~~i~~~~~~~~ev~i~sDmeAAm~-vK~G~aDYY~GACnTGg 56 (117)
T PF10941_consen 11 KEEIAELIEKLGPGKVEVTIKSDMEAAMA-VKSGQADYYLGACNTGG 56 (117)
T ss_pred HHHHHHHHHHHCCCcEEEEEechHHHHHH-hhcCCcCEeEeecCCCc
Confidence 35678888888776578999999998764 12354555555566774
No 192
>TIGR01865 cas_Csn1 CRISPR-associated protein, Csn1 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.
Probab=23.29 E-value=1.6e+02 Score=32.75 Aligned_cols=20 Identities=40% Similarity=0.370 Sum_probs=18.7
Q ss_pred cEEEEEEcCccceEEEEEeC
Q 017527 22 EVILGLDGGTTSTVCICMPV 41 (370)
Q Consensus 22 ~~vlGVDiGgT~i~~~l~d~ 41 (370)
.|+||+|||.+++=++++|.
T Consensus 1 ~y~LGLDiGt~SvGWAVv~~ 20 (805)
T TIGR01865 1 EYILGLDIGIASVGWAIVED 20 (805)
T ss_pred CceeEEeecccceeEEEEec
Confidence 38999999999999999997
No 193
>TIGR03285 methan_mark_14 putative methanogenesis marker protein 14. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=23.25 E-value=7.8e+02 Score=24.81 Aligned_cols=84 Identities=13% Similarity=0.059 Sum_probs=47.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceeeCCCCCc
Q 017527 250 AGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVCI 329 (370)
Q Consensus 250 ~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~~p~~~~~~p~~~~ 329 (370)
.|=+.-...+++....++.-+..+..-.++ -++-..|=+.|-..-.++. -+-+.+.+.+++.. ...+
T Consensus 330 ~~~~~l~~~lD~v~A~i~~Rli~~a~e~~l----i~~~t~iGiTGRAgITG~K---P~lIle~l~~~~~~-----d~~d- 396 (445)
T TIGR03285 330 EGIPTLFAVLDDVMALIAKRLIEQASKLGL----IQEKTTLGITGRAGITGYK---PELILEYLKNSFLW-----DKEE- 396 (445)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHcCC----CCCCCeeeeeeccccCCCC---hHHHHHHHHhcccc-----CCCC-
Confidence 455677788888888888887777766653 1113466677755544432 23456666664421 1211
Q ss_pred ccccccccccccccccceeE
Q 017527 330 WPHWHSCDQASANCCGAALC 349 (370)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~ 349 (370)
++...+++- -+|||-.+
T Consensus 397 -~vVFvdDGL--A~GAavMa 413 (445)
T TIGR03285 397 -NVVFVDDGL--ALGAAVMA 413 (445)
T ss_pred -cEEEeccch--hhhHHHHH
Confidence 233334444 47777655
No 194
>PRK11678 putative chaperone; Provisional
Probab=22.99 E-value=3.1e+02 Score=28.10 Aligned_cols=29 Identities=14% Similarity=0.242 Sum_probs=23.9
Q ss_pred CccEEEEcCcccCcccccchHHHHHHHHhhCCCcee
Q 017527 287 SFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVP 322 (370)
Q Consensus 287 P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~~p~~~~ 322 (370)
|+.|+|.||.+. ++.+++.+++.||..++
T Consensus 400 ~d~VvLvGGsSr-------iP~V~~~l~~~fg~~~v 428 (450)
T PRK11678 400 PDVIYLTGGSAR-------SPLIRAALAQQLPGIPI 428 (450)
T ss_pred CCEEEEcCcccc-------hHHHHHHHHHHCCCCcE
Confidence 689999999986 67788999998987653
No 195
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=22.87 E-value=73 Score=34.42 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=0.0
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCe
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPV 54 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~i 54 (370)
.+.+||||+|.|++.+++++. |.+
T Consensus 40 ~~~viGIDlGTt~s~va~~~~----------~~~ 63 (663)
T PTZ00400 40 TGDIVGIDLGTTNSCVAIMEG----------SQP 63 (663)
T ss_pred cCcEEEEEECcccEEEEEEeC----------Cee
No 196
>PLN03184 chloroplast Hsp70; Provisional
Probab=22.60 E-value=78 Score=34.29 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=0.0
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCe
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPV 54 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~i 54 (370)
+..++|||+|.|+..+++++. |.+
T Consensus 38 ~~~viGIDlGTt~s~va~~~~----------g~~ 61 (673)
T PLN03184 38 AEKVVGIDLGTTNSAVAAMEG----------GKP 61 (673)
T ss_pred CCCEEEEEeCcCcEEEEEEEC----------CeE
No 197
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=20.46 E-value=2.1e+02 Score=27.62 Aligned_cols=51 Identities=22% Similarity=0.259 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHcCCCccCcceEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHH
Q 017527 76 TIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDAL 135 (370)
Q Consensus 76 ~l~~~i~~~l~~~~~~~~~v~~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~ 135 (370)
.|+++|+++++++ .+|.+|-+=+ -.+...|+++++..+.-.+||||-=|-.
T Consensus 134 ~IKE~vR~~I~~A----~kVIAIVMD~-----FTD~dIf~DLleAa~kR~VpVYiLLD~~ 184 (284)
T PF07894_consen 134 HIKEVVRRMIQQA----QKVIAIVMDV-----FTDVDIFCDLLEAANKRGVPVYILLDEQ 184 (284)
T ss_pred CHHHHHHHHHHHh----cceeEEEeec-----cccHHHHHHHHHHHHhcCCcEEEEechh
Confidence 4677777777765 3576665532 2345678888887754348999765543
No 198
>KOG2201 consensus Pantothenate kinase PanK and related proteins [Coenzyme transport and metabolism]
Probab=20.30 E-value=8.6e+02 Score=24.18 Aligned_cols=53 Identities=8% Similarity=0.038 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHH
Q 017527 252 DEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCIL 314 (370)
Q Consensus 252 D~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~ 314 (370)
+-.|+.++.-.-.-+|+.........++ .+|++||-.....+.- +..+.-++.
T Consensus 278 eDia~SlL~mIsnNIGqiAyl~A~~~ni--------~rV~FgG~fiR~~~it--M~tLsyAi~ 330 (371)
T KOG2201|consen 278 EDIARSLLRMISNNIGQIAYLCALNENI--------KRVYFGGFFIRGHPIT--MKTLSYAIN 330 (371)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhCc--------cEEEEeeeEEecCcee--hHHHHHHHH
Confidence 3457777776666677666556666664 8999999999887664 666655553
Done!