Query 017528
Match_columns 370
No_of_seqs 198 out of 1997
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 15:53:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017528.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017528hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 99.1 6.7E-11 2.3E-15 93.9 5.4 70 261-330 35-105 (137)
2 3b5d_A Multidrug transporter E 98.7 2.1E-07 7.3E-12 71.1 11.6 69 80-154 34-103 (110)
3 3b5d_A Multidrug transporter E 98.7 2.2E-07 7.6E-12 70.9 11.0 69 261-329 35-104 (110)
4 2i68_A Protein EMRE; transmemb 98.7 5.6E-08 1.9E-12 77.0 7.4 70 80-155 34-104 (137)
5 1pw4_A Glycerol-3-phosphate tr 55.2 1.2E+02 0.0041 27.3 23.8 20 308-327 412-431 (451)
6 4djk_A Probable glutamate/gamm 42.1 2.2E+02 0.0074 26.5 11.7 12 73-84 232-243 (511)
7 2jo1_A Phospholemman; FXYD1, N 40.2 17 0.00057 24.2 2.1 18 313-330 22-39 (72)
8 2jp3_A FXYD domain-containing 23.8 78 0.0027 20.8 3.2 21 312-332 22-42 (67)
9 3rko_J NADH-quinone oxidoreduc 22.0 3.1E+02 0.011 22.0 13.1 31 297-327 127-159 (184)
10 2zxe_G FXYD10, phospholemman-l 21.5 63 0.0022 21.7 2.4 19 313-331 25-43 (74)
11 3l1l_A Arginine/agmatine antip 21.4 4.5E+02 0.015 23.6 17.1 42 291-332 389-430 (445)
12 4aps_A DI-OR tripeptide H+ sym 20.7 4.7E+02 0.016 23.6 14.0 160 180-349 46-216 (491)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=99.10 E-value=6.7e-11 Score=93.86 Aligned_cols=70 Identities=14% Similarity=0.185 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHhccCceeEEec-cchHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHhcCc
Q 017528 261 CGIIVTALTYYLQAWVIEKKGPVFLAMS-TPLALIFTTIASVFLLCEIITLGRILGGLLLIGGLYAVLWGK 330 (370)
Q Consensus 261 ~g~~~~~~~~~~~~~a~~~~~~~~~s~~-~~~~pi~~~~~~~~~~~e~~~~~~~iG~~li~~g~~l~~~~~ 330 (370)
.++++++++++++.+++++.+++++..+ ..+.|+++.+++++++||++++.+++|+++|++|+++....+
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4667889999999999999999999998 899999999999999999999999999999999999987543
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.69 E-value=2.1e-07 Score=71.06 Aligned_cols=69 Identities=17% Similarity=0.200 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcChhhHhhh-ccchhHHHHHHHHHHhhccccccccCccchhhhHHHHHhhhhhhhh
Q 017528 80 FLSLIGITFSLDLYGIALIYTSATLAAAT-TNCLPAITFFLAVLLRMEVLKLKTVPGVAKLVGILICIGGAATLAF 154 (370)
Q Consensus 80 ~~g~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~pi~~~ll~~l~~~e~~~~~~~~~~~~~~~i~l~~~Gv~li~~ 154 (370)
+.+++...+++.++.+++++.|.+.+..+ ..+.|+++.+++++++||+++.. +++|+.+++.|++++..
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~------~~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence 45666668899999999999999999999 69999999999999999999999 99999999999999875
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.67 E-value=2.2e-07 Score=70.94 Aligned_cols=69 Identities=14% Similarity=0.187 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHhccCceeEEec-cchHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHhcC
Q 017528 261 CGIIVTALTYYLQAWVIEKKGPVFLAMS-TPLALIFTTIASVFLLCEIITLGRILGGLLLIGGLYAVLWG 329 (370)
Q Consensus 261 ~g~~~~~~~~~~~~~a~~~~~~~~~s~~-~~~~pi~~~~~~~~~~~e~~~~~~~iG~~li~~g~~l~~~~ 329 (370)
.++++.+.++.++.+++|+.+.+.+..+ ..+.|+++.+++++++||++++.+++|.++++.|+++....
T Consensus 35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4566788999999999999999999888 89999999999999999999999999999999999988643
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.65 E-value=5.6e-08 Score=77.00 Aligned_cols=70 Identities=17% Similarity=0.198 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcChhhHhhh-ccchhHHHHHHHHHHhhccccccccCccchhhhHHHHHhhhhhhhhc
Q 017528 80 FLSLIGITFSLDLYGIALIYTSATLAAAT-TNCLPAITFFLAVLLRMEVLKLKTVPGVAKLVGILICIGGAATLAFY 155 (370)
Q Consensus 80 ~~g~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~pi~~~ll~~l~~~e~~~~~~~~~~~~~~~i~l~~~Gv~li~~~ 155 (370)
+.+++.+++++.++++++++.+++.+..+ .++.|+++.++++++++|+++.. +++|+++++.|++++...
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINLL 104 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhcC
Confidence 46666678999999999999999999999 79999999999999999999999 999999999999998763
No 5
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=55.21 E-value=1.2e+02 Score=27.32 Aligned_cols=20 Identities=10% Similarity=-0.210 Sum_probs=9.6
Q ss_pred chhhhHHHHHHHHHHHHHHh
Q 017528 308 ITLGRILGGLLLIGGLYAVL 327 (370)
Q Consensus 308 ~~~~~~iG~~li~~g~~l~~ 327 (370)
.....++..++.+++.++..
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~ 431 (451)
T 1pw4_A 412 WDGGFMVMIGGSILAVILLI 431 (451)
T ss_dssp SHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 44444454555555554443
No 6
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=42.12 E-value=2.2e+02 Score=26.52 Aligned_cols=12 Identities=8% Similarity=0.232 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q 017528 73 LTFCKIFFLSLI 84 (370)
Q Consensus 73 ~~~~~~~~~g~~ 84 (370)
|..++....++.
T Consensus 232 k~ip~ai~~~~~ 243 (511)
T 4djk_A 232 RDYPLAMLLLMV 243 (511)
T ss_dssp TTHHHHHHHHHH
T ss_pred cchhHHHHHHHH
Confidence 444554444433
No 7
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=40.16 E-value=17 Score=24.22 Aligned_cols=18 Identities=33% Similarity=0.663 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHhcCc
Q 017528 313 ILGGLLLIGGLYAVLWGK 330 (370)
Q Consensus 313 ~iG~~li~~g~~l~~~~~ 330 (370)
++++++.++|+++...++
T Consensus 22 ifA~vLfi~GI~iilS~K 39 (72)
T 2jo1_A 22 VIAGILFILGILIVLSRR 39 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCc
Confidence 456677777877776544
No 8
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=23.79 E-value=78 Score=20.83 Aligned_cols=21 Identities=52% Similarity=0.760 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHHhcCcch
Q 017528 312 RILGGLLLIGGLYAVLWGKSK 332 (370)
Q Consensus 312 ~~iG~~li~~g~~l~~~~~~~ 332 (370)
.++++++.++|+++...+|-|
T Consensus 22 LifA~vLfi~GI~iilS~kcr 42 (67)
T 2jp3_A 22 LIFGGLLCIAGIALALSGKCK 42 (67)
T ss_dssp HHHHHHHHHHHHHHHHTTHHH
T ss_pred hhhHHHHHHHHHHHHHcCccc
Confidence 345677778888887765433
No 9
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=21.98 E-value=3.1e+02 Score=22.02 Aligned_cols=31 Identities=16% Similarity=0.071 Sum_probs=23.1
Q ss_pred HHHHHHHhcccchhhhHHHHHHHH--HHHHHHh
Q 017528 297 TIASVFLLCEIITLGRILGGLLLI--GGLYAVL 327 (370)
Q Consensus 297 ~~~~~~~~~e~~~~~~~iG~~li~--~g~~l~~ 327 (370)
-.+|..++++-.-+.+.++..|.+ +|.+...
T Consensus 127 ~~iG~~Lft~Y~lpFElaSvlLLvAmIGAIvLa 159 (184)
T 3rko_J 127 KAVGITLFGPYVLAVELASMLLLAGLVVAFHVG 159 (184)
T ss_dssp HHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888899999999999988875 3444443
No 10
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=21.48 E-value=63 Score=21.68 Aligned_cols=19 Identities=32% Similarity=0.522 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHhcCcc
Q 017528 313 ILGGLLLIGGLYAVLWGKS 331 (370)
Q Consensus 313 ~iG~~li~~g~~l~~~~~~ 331 (370)
++++++.++|+++...+|=
T Consensus 25 ifA~vLfi~GI~iilS~kc 43 (74)
T 2zxe_G 25 IVAAVLCVIGIIILLAGKC 43 (74)
T ss_dssp HHHHHHHHHHHHHHTTTC-
T ss_pred hhHHHHHHHHHHHHHcCcc
Confidence 4567777888888766543
No 11
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=21.44 E-value=4.5e+02 Score=23.65 Aligned_cols=42 Identities=2% Similarity=-0.125 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHhcCcch
Q 017528 291 LALIFTTIASVFLLCEIITLGRILGGLLLIGGLYAVLWGKSK 332 (370)
Q Consensus 291 ~~pi~~~~~~~~~~~e~~~~~~~iG~~li~~g~~l~~~~~~~ 332 (370)
.-++++.++..+..-..-......|.++++.|+.++.+.+++
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~ 430 (445)
T 3l1l_A 389 AVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNR 430 (445)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444444444433322222234556888888898888654433
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=20.70 E-value=4.7e+02 Score=23.62 Aligned_cols=160 Identities=12% Similarity=-0.038 Sum_probs=0.0
Q ss_pred ccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCchhHHHHHHHHHHHHHHHHHHHhcCCCcccccccchhhHHH
Q 017528 180 HVSSGKTWIKGCFIMLSSNTSFGLWLVLQGFVMKS-YPSKLLFTTLQCFLSSIQSFAIAIALERDPHEWVLGWNVRLLAV 258 (370)
Q Consensus 180 ~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l 258 (370)
+++.+.+...--.+.....++..+......++.++ .+. ............+...... ............
T Consensus 46 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~-r~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~ 115 (491)
T 4aps_A 46 TGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGA-RPAVFWGGVLIMLGHIVLA---------LPFGASALFGSI 115 (491)
T ss_dssp HTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCH-HHHHHHHHHHHHHHHHHHH---------SCCSTTHHHHHH
T ss_pred hhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-hHHHHHHHHHHHHHHHHHH---------HhhhHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCcee---------EEeccchHHHHHHHHHHHHhc-ccchhhhHHHHHHHHHHHHHHhc
Q 017528 259 AYCGIIVTALTYYLQAWVIEKKGPVF---------LAMSTPLALIFTTIASVFLLC-EIITLGRILGGLLLIGGLYAVLW 328 (370)
Q Consensus 259 ~~~g~~~~~~~~~~~~~a~~~~~~~~---------~s~~~~~~pi~~~~~~~~~~~-e~~~~~~~iG~~li~~g~~l~~~ 328 (370)
+..|+......-.......+..++.. ......+...++..++-.+.+ .......++..++.+++.++...
T Consensus 116 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 195 (491)
T 4aps_A 116 ILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYF 195 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred CcchhhhhccccCCCcccccc
Q 017528 329 GKSKEQKMVDKSCLPTQVDQK 349 (370)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~ 349 (370)
.+++..++++++.++...+++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~ 216 (491)
T 4aps_A 196 GGKKTLDPHYLRPTDPLAPEE 216 (491)
T ss_dssp HHHTTCCSCCSCCSCCCSHHH
T ss_pred hCcccccccccCCCCccccch
Done!