Query 017528
Match_columns 370
No_of_seqs 198 out of 1997
Neff 9.4
Searched_HMMs 13730
Date Mon Mar 25 15:53:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017528.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017528hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 66.7 34 0.0025 28.6 23.5 16 269-284 361-376 (447)
2 d1iwga8 f.35.1.1 (A:513-566,A: 31.7 1E+02 0.0074 23.5 9.7 30 295-324 96-125 (222)
3 d1u7ga_ f.44.1.1 (A:) Ammonium 26.3 1.7E+02 0.013 24.4 20.5 50 189-240 281-331 (383)
4 d2e74g1 f.23.26.1 (G:9-35) Pet 21.4 45 0.0032 15.9 2.8 18 189-206 3-20 (27)
5 d1pw4a_ f.38.1.1 (A:) Glycerol 14.6 2.8E+02 0.021 22.2 17.4 6 126-131 84-89 (447)
6 d1iwga7 f.35.1.1 (A:7-37,A:331 10.6 90 0.0066 23.3 3.3 25 301-325 84-108 (199)
7 d1q90r_ f.23.12.1 (R:) ISP sub 7.0 2E+02 0.014 15.3 4.1 34 67-100 4-37 (39)
8 d2axtl1 f.23.31.1 (L:1-37) Pho 6.6 1.9E+02 0.014 14.8 3.8 20 186-205 16-35 (37)
9 d2axtt1 f.23.34.1 (T:1-30) Pho 6.0 1.8E+02 0.013 13.9 2.1 8 302-309 21-28 (30)
10 d2r6gf1 e.70.1.1 (F:13-260) Ma 5.5 5.9E+02 0.043 19.3 6.7 18 114-131 36-53 (248)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=66.65 E-value=34 Score=28.60 Aligned_cols=16 Identities=6% Similarity=-0.051 Sum_probs=7.6
Q ss_pred HHHHHHHHHhccCcee
Q 017528 269 TYYLQAWVIEKKGPVF 284 (370)
Q Consensus 269 ~~~~~~~a~~~~~~~~ 284 (370)
....+....+..+...
T Consensus 361 ~~~~~~~~~~~~p~~~ 376 (447)
T d1pw4a_ 361 VMLIGLHALELAPKKA 376 (447)
T ss_dssp HHHHHHHHHHTSCTTH
T ss_pred HHHHHHHHHHHcCHHH
Confidence 3334445555555443
No 2
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=31.70 E-value=1e+02 Score=23.48 Aligned_cols=30 Identities=13% Similarity=-0.078 Sum_probs=21.0
Q ss_pred HHHHHHHHHhcccchhhhHHHHHHHHHHHH
Q 017528 295 FTTIASVFLLCEIITLGRILGGLLLIGGLY 324 (370)
Q Consensus 295 ~~~~~~~~~~~e~~~~~~~iG~~li~~g~~ 324 (370)
.+.+.+..+.+.+++....+|.++.++-.+
T Consensus 96 ~~~~~~l~~~g~~~~~~~~~g~i~l~Gi~v 125 (222)
T d1iwga8 96 IGALLAATFRGLTNDVYFQVGLLTTIGLSA 125 (222)
T ss_dssp HHHHHHHHHTTCCBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchhhhhcccccchhhhhh
Confidence 344556667899999988888877654433
No 3
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=26.30 E-value=1.7e+02 Score=24.39 Aligned_cols=50 Identities=6% Similarity=-0.047 Sum_probs=28.3
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHh
Q 017528 189 KGCFIMLSSN-TSFGLWLVLQGFVMKSYPSKLLFTTLQCFLSSIQSFAIAIAL 240 (370)
Q Consensus 189 ~G~~~~l~a~-~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 240 (370)
...++.++++ +++-.+..+.+|. +.+||..........+..-.+...++.
T Consensus 281 ~A~~iG~i~g~i~~~~~~~l~~~~--~iDD~~~~~~vHg~~Gi~G~l~~glfa 331 (383)
T d1u7ga_ 281 GALIIGVVAGLAGLWGVTMLKRLL--RVDDPCDVFGVHGVCGIVGCIMTGIFA 331 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--CSCCGGGHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHhhccHHHHHHHHHHHhhc--ccccccceEeehhhhHHHHHHHHHHhc
Confidence 3445554444 3343444443343 456778888877777776666655553
No 4
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=21.44 E-value=45 Score=15.85 Aligned_cols=18 Identities=6% Similarity=0.041 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 017528 189 KGCFIMLSSNTSFGLWLV 206 (370)
Q Consensus 189 ~G~~~~l~a~~~~a~~~v 206 (370)
+|.+.+-+++++||.|.-
T Consensus 3 lgli~~tl~glf~aayqq 20 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHHH
Confidence 678888888999888753
No 5
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=14.59 E-value=2.8e+02 Score=22.17 Aligned_cols=6 Identities=0% Similarity=-0.008 Sum_probs=3.0
Q ss_pred cccccc
Q 017528 126 EVLKLK 131 (370)
Q Consensus 126 e~~~~~ 131 (370)
||+.+|
T Consensus 84 Dr~g~r 89 (447)
T d1pw4a_ 84 DRSNPR 89 (447)
T ss_dssp HHSCHH
T ss_pred HHcCch
Confidence 555544
No 6
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=10.61 E-value=90 Score=23.34 Aligned_cols=25 Identities=24% Similarity=0.165 Sum_probs=16.8
Q ss_pred HHHhcccchhhhHHHHHHHHHHHHH
Q 017528 301 VFLLCEIITLGRILGGLLLIGGLYA 325 (370)
Q Consensus 301 ~~~~~e~~~~~~~iG~~li~~g~~l 325 (370)
..++|.+++.....+..+.++..+-
T Consensus 84 m~~~g~~l~~~s~~~~~i~igi~vd 108 (199)
T d1iwga7 84 LAAFGFSINTLTMFGMVLAIGLLVD 108 (199)
T ss_dssp HHTTTCCSCHHHHHHHHHHHHHHHH
T ss_pred hhcCCCchHHHHHHHHHHHHHHhcc
Confidence 4567888887777777766655443
No 7
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=7.04 E-value=2e+02 Score=15.31 Aligned_cols=34 Identities=9% Similarity=0.229 Sum_probs=20.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 017528 67 APPLSFLTFCKIFFLSLIGITFSLDLYGIALIYT 100 (370)
Q Consensus 67 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~ 100 (370)
.+...+|....++..|.+.......++=++.-+.
T Consensus 4 VpDMgrR~~MNLll~G~~~~~~~g~l~py~~fFv 37 (39)
T d1q90r_ 4 VPDMNKRNIMNLILAGGAGLPITTLALGYGAFFV 37 (39)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccchhHHHHHHHHHHhccchhhhhhccceeEEec
Confidence 3455677777778777766555554544444333
No 8
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.59 E-value=1.9e+02 Score=14.81 Aligned_cols=20 Identities=15% Similarity=0.318 Sum_probs=13.8
Q ss_pred chHHHHHHHHHHHHHHHHHH
Q 017528 186 TWIKGCFIMLSSNTSFGLWL 205 (370)
Q Consensus 186 ~~~~G~~~~l~a~~~~a~~~ 205 (370)
+.-+|.++.+.-++.++-|.
T Consensus 16 sLy~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 16 SLYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 34568887777777777664
No 9
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.97 E-value=1.8e+02 Score=13.87 Aligned_cols=8 Identities=13% Similarity=0.044 Sum_probs=4.3
Q ss_pred HHhcccch
Q 017528 302 FLLCEIIT 309 (370)
Q Consensus 302 ~~~~e~~~ 309 (370)
++|+|+|.
T Consensus 21 iffreppr 28 (30)
T d2axtt1 21 IFFREPPR 28 (30)
T ss_dssp HHTSCCCC
T ss_pred HHhcCCCC
Confidence 45666653
No 10
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=5.51 E-value=5.9e+02 Score=19.34 Aligned_cols=18 Identities=0% Similarity=-0.285 Sum_probs=8.7
Q ss_pred HHHHHHHHHHhhcccccc
Q 017528 114 AITFFLAVLLRMEVLKLK 131 (370)
Q Consensus 114 i~~~ll~~l~~~e~~~~~ 131 (370)
+.+.++.++++.+|.-..
T Consensus 36 ~~~~~~~~vy~s~r~~p~ 53 (248)
T d2r6gf1 36 ILSSAGLYIFANRKAYAW 53 (248)
T ss_dssp HHHHHHHHHHSSSCCTTH
T ss_pred HHHHheEEEEEccCccce
Confidence 445555556654443333
Done!