AT5G04920 protein (Arabidopsis thaliana)

STRING 9.05

AT5G04920 protein (Arabidopsis thaliana) - STRING network view

This is the evidence view. Different line colors represent the types of evidence for the association.




confidence	evidence	actions	interactive	advanced	more	less	save

Your Input:
	AT5G04920	vacuolar protein sorting 36 family protein / VPS36 family protein; vacuolar protein sorting 36 family protein / VPS36 family protein; FUNCTIONS IN- transporter activity; INVOLVED IN- vesicle-mediated transport; LOCATED IN- ESCRT II complex; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- EAP30 (InterPro-IPR007286); Has 235 Blast hits to 233 proteins in 112 species- Archae - 0; Bacteria - 0; Metazoa - 113; Fungi - 67; Plants - 24; Viruses - 0; Other Eukaryotes - 31 (source- NCBI BLink). ; Component of the ESCRT-II complex (endosomal sor [...] (440 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	VPS20.2	VPS20.2 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 20.2); VACUOLAR PROTEIN SORTING-ASSOCIATED [...] (216 aa)		•	•	•	0.999
	VPS25	VPS25; VPS25; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- vesicle-mediated transport [...] (179 aa)		•	•	•	0.998
	VPS20.1	VPS20.1; VPS20.1; INVOLVED IN- vesicle-mediated transport, N-terminal protein myristoylation; L [...] (219 aa)		•	•	•	0.998
	VPS22	VPS22; VPS22; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- vesicle-mediated transport [...] (250 aa)		•	•	•	0.997
	VPS24.1	VPS24.1; VPS24.1; INVOLVED IN- vesicle-mediated transport; LOCATED IN- ESCRT III complex; EXPRE [...] (229 aa)			•	•	0.991
	VPS2.1	VPS2.1; VPS2.1; INVOLVED IN- vesicle-mediated transport; LOCATED IN- ESCRT III complex; EXPRESS [...] (225 aa)		•	•	•	0.991
	VPS24.2	VPS24.2; VPS24.2; INVOLVED IN- vesicle-mediated transport; LOCATED IN- ESCRT III complex; CONTA [...] (200 aa)			•	•	0.987
	ELC	ELC; ubiquitin binding; Mutants of this gene were initially identified because of the trichome [...] (398 aa)	•	•		•	0.983
	SNF7.1	SNF7.1; SNF7.1; INVOLVED IN- vesicle-mediated transport; LOCATED IN- ESCRT III complex; EXPRESS [...] (219 aa)			•	•	0.976
	ELC-Like	ELC-Like (ELCH-like); small conjugating protein ligase; ELCH-like (ELC-Like); FUNCTIONS IN- sma [...] (368 aa)		•		•	0.970

Views:

Info & Parameters ...

Network Display - Nodes are either colored (if they are directly linked to the input - as in the table) or white (nodes of a higher iteration/depth). Edges, i.e. predicted functional links, consist of up to eight lines: one color for each type of evidence. Hover or click to reveal more information about the node/edge.

Active Prediction Methods:

Neighborhood Gene Fusion Co-occurrence
Co-expression Experiments Databases Textmining

required confidence (score):

interactors shown:

or custom value:

or custom limit:

additional (white) nodes

Server load: very high (>100%)

Permalink