BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017530
(370 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FF81|VPS36_ARATH Vacuolar protein sorting-associated protein 36 OS=Arabidopsis
thaliana GN=VPS36 PE=1 SV=1
Length = 440
Score = 468 bits (1205), Expect = e-131, Method: Compositional matrix adjust.
Identities = 240/367 (65%), Positives = 287/367 (78%), Gaps = 22/367 (5%)
Query: 1 MASNNFFLPASVTSSGRPVLVPNEVECNLLSNVDIEHDQDDAVSFPPLKSGHFILTTHRL 60
+A F A VT+SGRPVL NEVEC LLS++DI+ +DD F L+SG+ ILTTHRL
Sbjct: 8 IAIGGLFENAEVTTSGRPVLRRNEVECFLLSSIDID-SEDDPPRFTALRSGNLILTTHRL 66
Query: 61 LFL-SSSCSSTAVAIPLSAITHIFSSKRSLKSVFHSPRFRFQVSATPDNRIFDSDPGRVT 119
+++ S S S +IPLSA+THI+S K+S+KS+FHSPR RFQ +DPG
Sbjct: 67 IWIPSQSNESVPSSIPLSAVTHIYSHKKSIKSMFHSPRIRFQ-----------ADPG--- 112
Query: 120 GLRSVVITVVVRGKGDWELFLSKMWECWRGRAWAWETTPSETGPASASASAS--LYASDG 177
S+V+T+V RGKGD++ FLSK+WECWRGRAW E S S + + LY +DG
Sbjct: 113 ---SIVVTIVFRGKGDFDGFLSKLWECWRGRAWEEEEKSESETSKSGSGTVAQGLYGNDG 169
Query: 178 SVRMVGVGGLLRKEQEMWESTDRSLQEAFQDLNALMNKAKEMVMLAEKMRQKLLAGSSSQ 237
+VRMVG+ G+LRKEQE WESTD+SLQ+AFQDLNALM+KAKEMV LAEKMRQKLL+ SSQ
Sbjct: 170 TVRMVGLAGILRKEQEQWESTDKSLQDAFQDLNALMSKAKEMVSLAEKMRQKLLSAPSSQ 229
Query: 238 SNSANDEELGSKEEMQDWLLSVGIVSPVTKESAGALYHQQLSRQLADFVKIPLERAGGMI 297
+ S +DEE+GSKEEMQ W+LSVGI+SPVTKESAGALYHQ+LSRQLADFV+IPLE+AGGMI
Sbjct: 230 NGSTDDEEMGSKEEMQQWMLSVGIISPVTKESAGALYHQELSRQLADFVRIPLEKAGGMI 289
Query: 298 NLIDVYCLFNRARGTALISPDDLSQACSLWEKFDVPVMLRKFDSGVMAIQSKSHSDEESM 357
+L D+Y FNRARGT LISPDDL QAC+LWEKFDVPVMLRKFDSGVM IQ+KSHSDEE +
Sbjct: 290 SLTDMYYHFNRARGTELISPDDLWQACTLWEKFDVPVMLRKFDSGVMVIQNKSHSDEE-V 348
Query: 358 MERIRFL 364
M RIR L
Sbjct: 349 MSRIRML 355
>sp|Q91XD6|VPS36_MOUSE Vacuolar protein-sorting-associated protein 36 OS=Mus musculus
GN=Vps36 PE=1 SV=1
Length = 386
Score = 192 bits (488), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 114/321 (35%), Positives = 177/321 (55%), Gaps = 27/321 (8%)
Query: 37 HDQDDAVSFPPLKSGHFILTTHRLLFLSSSCSSTAVAIPLSAITHIFSSKRSLKSVFHSP 96
+D ++ + F +G +L+THRL++ + +AIPLS I I + + S
Sbjct: 27 YDGEEKIKF---DAGTLLLSTHRLIWRDQKNNECCMAIPLSQIVFI---EEQAAGIGKSA 80
Query: 97 RFRFQVSATPDNRIFDSDPGRVTGLRSVVITVVVRGKGDWELFLSKMWECWRGRAWAWET 156
+ + P N+ +PG ++ I + + G E F ++ E R W
Sbjct: 81 KIVVHLHPAPSNK----EPGPFQSSKNSYIRLSFKEHGQIE-FYRRLSEEMTQRRW---- 131
Query: 157 TPSETGPASASASASLYASDGSVRMVGVGGLLRKEQEMWESTDRSLQEAFQDLNALMNKA 216
ET P S S + G VR VG+ G+ RK +E + TD+++ EAF+DL+ LM KA
Sbjct: 132 ---ETVPVSQSLQTNKGPQPGRVRAVGIVGIERKLEEKRKETDKNISEAFEDLSKLMIKA 188
Query: 217 KEMVMLAEKMRQKLLAGSSSQSNSANDEELGSKEEMQDWLLSVGIVSPVTKES--AGALY 274
KEMV L++ + K+ Q + DE + + +LLS+GI +PVT+E+ +G Y
Sbjct: 189 KEMVELSKSIANKI---KEKQGDVTEDETI----RFKSYLLSMGIANPVTRETYGSGTQY 241
Query: 275 HQQLSRQLADFVKIPLERAGGMINLIDVYCLFNRARGTALISPDDLSQACSLWEKFDVPV 334
H QL++QLA ++ PLE GG+++L +VYCL NRARG L+SP+DL AC + E +P+
Sbjct: 242 HMQLAKQLAGILQAPLEERGGIMSLTEVYCLVNRARGMELLSPEDLVNACKMLEALKLPI 301
Query: 335 MLRKFDSGVMAIQSKSHSDEE 355
LR FDSGVM I+ ++H +EE
Sbjct: 302 RLRVFDSGVMVIELQTHKEEE 322
>sp|Q7ZVK4|VPS36_DANRE Vacuolar protein-sorting-associated protein 36 OS=Danio rerio
GN=vps36 PE=2 SV=1
Length = 382
Score = 191 bits (486), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 115/311 (36%), Positives = 171/311 (54%), Gaps = 26/311 (8%)
Query: 48 LKSGHFILTTHRLLFLSSSCSSTAVAIPLSAITHIFSSKRSLKSVFHSPRFRFQVSATPD 107
L G +L+THRLL+ + IPLS + IF +++ + S + + P+
Sbjct: 35 LDVGGVVLSTHRLLWRDQKNHECCICIPLSQV--IFFEEQA-AGIGKSAKIVIHLHPAPE 91
Query: 108 NRIFDSDPGRVTGLRSVVITVVVRGKGDWELFLSKMWECWRGRAWAWETTP-SETGPASA 166
N+ +PG + I + + G E + E + R WE TP S+ P
Sbjct: 92 NK----EPGPYQHSKYSYIKLSFKEHGQIEFYRRLTEEMTQKR---WENTPVSQPIPTGT 144
Query: 167 SASASLYASDGSVRMVGVGGLLRKEQEMWESTDRSLQEAFQDLNALMNKAKEMVMLAEKM 226
A G R VG+ G+ RK +E + TD+++ EAF+DL+ LM KAKEMV L+ +
Sbjct: 145 GPKA------GRTRAVGIVGIERKLEEKRKETDKNISEAFEDLSKLMEKAKEMVELSRSI 198
Query: 227 RQKLLAGSSSQSNSANDEELGSKEEMQDWLLSVGIVSPVTKES--AGALYHQQLSRQLAD 284
K+ Q + DE + + +LLS+GI +PVT+E+ +G YH QL++QL D
Sbjct: 199 ANKI---KDKQGDITEDETI----RFKSYLLSMGIANPVTRETHGSGTQYHIQLAKQLGD 251
Query: 285 FVKIPLERAGGMINLIDVYCLFNRARGTALISPDDLSQACSLWEKFDVPVMLRKFDSGVM 344
++ PLE GGM+ L +VYCL NRARG L+SP+DL AC ++E +P+ LR FDSGVM
Sbjct: 252 MLQAPLEERGGMMALTEVYCLVNRARGMELLSPEDLVNACKIFESLKLPLRLRVFDSGVM 311
Query: 345 AIQSKSHSDEE 355
+Q +SHS+EE
Sbjct: 312 VVQLQSHSEEE 322
>sp|P0C0A2|VPS36_RAT Vacuolar protein-sorting-associated protein 36 OS=Rattus norvegicus
GN=Vps36 PE=1 SV=1
Length = 386
Score = 190 bits (483), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 113/321 (35%), Positives = 176/321 (54%), Gaps = 27/321 (8%)
Query: 37 HDQDDAVSFPPLKSGHFILTTHRLLFLSSSCSSTAVAIPLSAITHIFSSKRSLKSVFHSP 96
+D ++ + F +G +L+THRL++ + +AIPLS I I + + S
Sbjct: 27 YDGEEKIKF---DAGTLLLSTHRLIWRDQKNNECCMAIPLSQIVFI---EEQAAGIGKSA 80
Query: 97 RFRFQVSATPDNRIFDSDPGRVTGLRSVVITVVVRGKGDWELFLSKMWECWRGRAWAWET 156
+ + P N+ +PG ++ I + + G E F ++ E R W
Sbjct: 81 KIVVHLHPAPPNK----EPGPFQSSKNSYIKLSFKEHGQIE-FYRRLSEEMTQRRW---- 131
Query: 157 TPSETGPASASASASLYASDGSVRMVGVGGLLRKEQEMWESTDRSLQEAFQDLNALMNKA 216
ET P S S G +R VG+ G+ RK +E + TD+++ EAF+DL+ LM +A
Sbjct: 132 ---ETVPVSQSLQTKKGPQPGRIRAVGIVGIERKLEEKRKETDKNISEAFEDLSKLMIQA 188
Query: 217 KEMVMLAEKMRQKLLAGSSSQSNSANDEELGSKEEMQDWLLSVGIVSPVTKES--AGALY 274
KEMV L++ + K+ Q + DE + + +LLS+GI +PVT+E+ +G Y
Sbjct: 189 KEMVELSKSIANKI---KEKQGDVTEDETI----RFKSYLLSMGIANPVTRETYGSGTQY 241
Query: 275 HQQLSRQLADFVKIPLERAGGMINLIDVYCLFNRARGTALISPDDLSQACSLWEKFDVPV 334
H QL++QLA ++ PLE GG+++L +VYCL NRARG L+SP+DL AC + E +PV
Sbjct: 242 HMQLAKQLAGILQAPLEERGGIMSLTEVYCLVNRARGMELLSPEDLVNACKMLEGLKLPV 301
Query: 335 MLRKFDSGVMAIQSKSHSDEE 355
LR FDSGVM I+ ++H +EE
Sbjct: 302 RLRVFDSGVMVIELQTHKEEE 322
>sp|A5PK00|VPS36_BOVIN Vacuolar protein-sorting-associated protein 36 OS=Bos taurus
GN=VPS36 PE=2 SV=1
Length = 386
Score = 186 bits (473), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 112/321 (34%), Positives = 173/321 (53%), Gaps = 27/321 (8%)
Query: 37 HDQDDAVSFPPLKSGHFILTTHRLLFLSSSCSSTAVAIPLSAITHIFSSKRSLKSVFHSP 96
+D ++ + F P G +L+THRL++ +AIPLS I I + + S
Sbjct: 27 YDGEEKIKFDP---GTLLLSTHRLIWRDQKNHECCMAIPLSQIVFI---EEQAAGIGKSA 80
Query: 97 RFRFQVSATPDNRIFDSDPGRVTGLRSVVITVVVRGKGDWELFLSKMWECWRGRAWAWET 156
+ + N+ +PG ++ I + + G E F ++ E R W
Sbjct: 81 KIVVHLHPAASNK----EPGPFQSSKNSYIKLSFKEHGQIE-FYRRLSEEMTQRRW---- 131
Query: 157 TPSETGPASASASASLYASDGSVRMVGVGGLLRKEQEMWESTDRSLQEAFQDLNALMNKA 216
E P S + G +R VG+ G+ RK +E + TD+++ EAF+DL+ LM KA
Sbjct: 132 ---ENMPVPQSLQTNRGPQPGRIRAVGIVGIERKLEEKRKETDKNISEAFEDLSKLMVKA 188
Query: 217 KEMVMLAEKMRQKLLAGSSSQSNSANDEELGSKEEMQDWLLSVGIVSPVTKES--AGALY 274
KEMV L++ + K+ Q + DE + + +LLS+GI +PVT+E+ +G Y
Sbjct: 189 KEMVELSKSIANKI---KDKQGDITEDETI----RFKSYLLSMGIANPVTRETYGSGTQY 241
Query: 275 HQQLSRQLADFVKIPLERAGGMINLIDVYCLFNRARGTALISPDDLSQACSLWEKFDVPV 334
H QL++QLA ++ PLE GG+++L +VYCL NRARG L+SP+DL AC + E +P+
Sbjct: 242 HMQLAKQLAGILQAPLEERGGIMSLTEVYCLVNRARGMELLSPEDLVNACKMLEALKLPL 301
Query: 335 MLRKFDSGVMAIQSKSHSDEE 355
LR FDSGVM I+ +SH +EE
Sbjct: 302 RLRVFDSGVMVIELQSHKEEE 322
>sp|Q86VN1|VPS36_HUMAN Vacuolar protein-sorting-associated protein 36 OS=Homo sapiens
GN=VPS36 PE=1 SV=1
Length = 386
Score = 186 bits (473), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 112/321 (34%), Positives = 175/321 (54%), Gaps = 27/321 (8%)
Query: 37 HDQDDAVSFPPLKSGHFILTTHRLLFLSSSCSSTAVAIPLSAITHIFSSKRSLKSVFHSP 96
+D ++ + F +G +L+THRL++ +AI LS I I + + S
Sbjct: 27 YDGEEKIKF---DAGTLLLSTHRLIWRDQKNHECCMAILLSQIVFI---EEQAAGIGKSA 80
Query: 97 RFRFQVSATPDNRIFDSDPGRVTGLRSVVITVVVRGKGDWELFLSKMWECWRGRAWAWET 156
+ + P N+ +PG ++ I + + G E F ++ E R W
Sbjct: 81 KIVVHLHPAPPNK----EPGPFQSSKNSYIKLSFKEHGQIE-FYRRLSEEMTQRRW---- 131
Query: 157 TPSETGPASASASASLYASDGSVRMVGVGGLLRKEQEMWESTDRSLQEAFQDLNALMNKA 216
E P S S + G +R VG+ G+ RK +E + TD+++ EAF+DL+ LM KA
Sbjct: 132 ---ENMPVSQSLQTNRGPQPGRIRAVGIVGIERKLEEKRKETDKNISEAFEDLSKLMIKA 188
Query: 217 KEMVMLAEKMRQKLLAGSSSQSNSANDEELGSKEEMQDWLLSVGIVSPVTKES--AGALY 274
KEMV L++ + K+ Q + DE + + +LLS+GI +PVT+E+ +G Y
Sbjct: 189 KEMVELSKSIANKI---KDKQGDITEDETI----RFKSYLLSMGIANPVTRETYGSGTQY 241
Query: 275 HQQLSRQLADFVKIPLERAGGMINLIDVYCLFNRARGTALISPDDLSQACSLWEKFDVPV 334
H QL++QLA +++PLE GG+++L +VYCL NRARG L+SP+DL AC + E +P+
Sbjct: 242 HMQLAKQLAGILQVPLEERGGIMSLTEVYCLVNRARGMELLSPEDLVNACKMLEALKLPL 301
Query: 335 MLRKFDSGVMAIQSKSHSDEE 355
LR FDSGVM I+ +SH +EE
Sbjct: 302 RLRVFDSGVMVIELQSHKEEE 322
>sp|Q6DDF4|VPS36_XENLA Vacuolar protein-sorting-associated protein 36 OS=Xenopus laevis
GN=vps36 PE=2 SV=1
Length = 388
Score = 185 bits (470), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 119/319 (37%), Positives = 177/319 (55%), Gaps = 44/319 (13%)
Query: 50 SGHFILTTHRLLFLSSSCSSTAVAIPLSAITHIFSSK------RSLKSVFH-SPRFRFQV 102
SG +LTTHRL++ +A PLS I +F+ + +S K V H P
Sbjct: 37 SGTLLLTTHRLIWRDQKNHDFCIAFPLSQI--VFTEEQAGGIGKSAKIVVHLHP------ 88
Query: 103 SATPDNRIFDSDPGRVTGLRSVVITVVVRGKGDWELFLSKMWECWRGRAWAWETTPSETG 162
ATP+ +PG R + + R G E F ++ E R W
Sbjct: 89 -ATPNK-----EPGPYQTSRYSYVKLSFREHGQIE-FQRRLAEELTQRRWER-------- 133
Query: 163 PASASASASLYASDG----SVRMVGVGGLLRKEQEMWESTDRSLQEAFQDLNALMNKAKE 218
SASAS S+ + G ++ VG+ G+ RK +E + TD+++ EAF+DL+ LM KAKE
Sbjct: 134 -LSASASPSMQMNKGPQTGRIKAVGIVGIERKLEEKRKETDKNISEAFEDLSKLMEKAKE 192
Query: 219 MVMLAEKMRQKLLAGSSSQSNSANDEELGSKEEMQDWLLSVGIVSPVTKES--AGALYHQ 276
MV L++ + K+ Q + + DE + + +LLS+GI +PVT+E+ +G YH
Sbjct: 193 MVELSKSIATKI---KDKQGDISEDETI----RFKSYLLSMGIANPVTRETHGSGTHYHM 245
Query: 277 QLSRQLADFVKIPLERAGGMINLIDVYCLFNRARGTALISPDDLSQACSLWEKFDVPVML 336
QL++QLA ++ PLE GG+++L +VYCL NRARG L+SP+DL AC + E +P+ L
Sbjct: 246 QLAKQLATMLQAPLEERGGIMSLTEVYCLVNRARGMELLSPEDLVNACKMLESLKLPIRL 305
Query: 337 RKFDSGVMAIQSKSHSDEE 355
R FDSGVM I+ +SH++EE
Sbjct: 306 RVFDSGVMVIEHQSHNEEE 324
>sp|Q54T18|VPS36_DICDI Vacuolar protein-sorting-associated protein 36 OS=Dictyostelium
discoideum GN=vps36 PE=3 SV=1
Length = 611
Score = 152 bits (384), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 119/186 (63%), Gaps = 13/186 (6%)
Query: 177 GSVRMVGVGGLLRKEQEMWESTDRSLQEAFQDLNALMNKAKEMVMLAEKMRQKLLAGSSS 236
G G+GG++ + + D+ L E+F DLN LM KAK+MV L+EK++ L
Sbjct: 366 GFTSNAGIGGIINQMNKKTLENDKLLSESFSDLNILMEKAKDMVTLSEKLKVTL------ 419
Query: 237 QSNSANDEELGSKEEMQDWLLSVGIVSPVTKESAGALYHQQLSRQLADFV--KIPLERAG 294
+ + +EE + +LL +GI SPVTK++A + YH QLS+QL+D++ K L++
Sbjct: 420 EKKTGTSTSTEEEEEFRSFLLEMGIESPVTKKTAKSKYHDQLSKQLSDWIITKNILKQHK 479
Query: 295 G-----MINLIDVYCLFNRARGTALISPDDLSQACSLWEKFDVPVMLRKFDSGVMAIQSK 349
G MI L D+YC+FNRARG LISPDDL +AC L+E D+P+ LRKFDSGV+ +QSK
Sbjct: 480 GSGNNEMITLSDLYCIFNRARGIELISPDDLYRACLLFESLDLPLRLRKFDSGVIVVQSK 539
Query: 350 SHSDEE 355
+DE+
Sbjct: 540 DENDEQ 545
>sp|Q9VU87|VPS36_DROME Vacuolar protein-sorting-associated protein 36 OS=Drosophila
melanogaster GN=Vps36 PE=2 SV=2
Length = 399
Score = 135 bits (341), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 107/343 (31%), Positives = 170/343 (49%), Gaps = 29/343 (8%)
Query: 20 LVPNEVECNLLSNVDIEHDQDDAVSFPPLKSGHFILTTHRLLFLSS---SCSSTAVAIPL 76
L PNE + + V I +D D F + G +LTTHRL + + ++ + +PL
Sbjct: 11 LSPNESFVSRDNRVKI-YDGDQKTDF---EDGEVVLTTHRLFWGRPGEIARAAVTLCLPL 66
Query: 77 SAITHIFSSKRSLKSVFHSPRFRFQVSATPDNRIFDSDPGRVTGLRSVVITVVVRGKGDW 136
S + + S+ + S F + R + P D PG + R+ I + GK
Sbjct: 67 SYVISV--SEETTASNFFGRKTRIIMHLHPPTS--DKGPGPLDTSRATHIKL--SGKNGL 120
Query: 137 EL-FLSKMWECWRGRAWAWETTPSETGPASASASASLYASDGSVRM---VGVGGLLRKEQ 192
+ F S + E R W T AS+ A+D R+ G+GG+ R +
Sbjct: 121 SVEFHSALRETLNARVWEILLTSEIIINGVASSPTLEPANDRLARIQKRTGIGGIERHLE 180
Query: 193 EMWESTDRSLQEAFQDLNALMNKAKEMVMLAEKMRQKLLAGSSSQSNSANDEELGSKEEM 252
++TD ++ AFQDL+ LM AK+MV +++ + K+ Q +D+E
Sbjct: 181 AKAKATDENIALAFQDLSVLMAMAKDMVGVSKTISSKI----RKQKGEISDDE---TVRF 233
Query: 253 QDWLLSVGIVSPVTKE--SAGALYHQQLSRQLADFVKIPLERAGGMINLIDVYCLFNRAR 310
+ +L+S+GI PVT++ ++ + Y L+RQ+ + + P+E GGM++L DVYC NRAR
Sbjct: 234 KSYLMSLGIDDPVTRDNFTSNSAYFSSLARQICEMLLDPIEEQGGMMSLADVYCRVNRAR 293
Query: 311 GTALISPDDLSQACSLWEKFDVPVMLRKFDSGVMAIQSKSHSD 353
G L+SP+DL AC E+ P+ LR F SG +Q +SH D
Sbjct: 294 GLELLSPEDLLHAC---EQLSGPIRLRSFPSGARVLQLESHDD 333
>sp|O43038|VPS36_SCHPO Vacuolar protein-sorting-associated protein 36
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vps36 PE=3 SV=1
Length = 467
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 101/221 (45%), Gaps = 10/221 (4%)
Query: 149 GRAWAWETTPSETGPASASASASLYAS--------DGSVRMVGVGGLLRKEQEMWESTDR 200
G + +E SET ++ Y + + S+RM G+ L + + R
Sbjct: 179 GSSKFYEAIKSETDEIEKQRYSNKYDTKVLRKAILEKSLRMGGIHDLEQSHEMQLAKNGR 238
Query: 201 SLQEAFQDLNALMNKAKEMVMLAEKMRQKLLAGSSSQSNSANDEELGSKEEMQDWLLSVG 260
+L AFQDL+A + AK+ + LA++ +K+ + +Q + + L ++ +L
Sbjct: 239 TLVHAFQDLDAFFSLAKDTMSLADQFAEKMDGLTGTQQSDKVQQLLNKSNQL--GVLRGN 296
Query: 261 IVSPVTKESAGALYHQQLSRQLADFVKIPLERAGGMINLIDVYCLFNRARGTALISPDDL 320
+ V + LY +L + +++ ++ L+ + + + ++NR+R LI P
Sbjct: 297 HLDNVPVSANSRLYDIELCKSISEVLRTRLKADTDTVTMTQAWAIYNRSRKANLIPPTRF 356
Query: 321 SQACSLWEKFDVPVMLRKFDSGVMAIQSKSHSDEESMMERI 361
+AC L + +V + K +SG++ Q K+ + ++ I
Sbjct: 357 VKACELIDSMEVGITTSKMNSGLILFQLKTSNHSGKLLSAI 397
>sp|Q06696|VPS36_YEAST Vacuolar protein-sorting-associated protein 36 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS36 PE=1
SV=1
Length = 566
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 85/176 (48%), Gaps = 16/176 (9%)
Query: 182 VGVGGLLRKEQEMWESTDRSLQEAFQDLNALMNKAKEMVMLAEKMRQKLLAGSSSQSNSA 241
+G+ L + + + D A DLN LM+ A + E++ + +++ +
Sbjct: 323 IGISSLEKSRENQLLNNDILFNNALTDLNKLMSLATSI----ERLYKNSNITMKTKTLNL 378
Query: 242 NDEELGSKEEMQDWLLSVGIVSPVTKESAGALYHQQLSRQ-----LADFVKIPLERAGGM 296
DE ++ + + LL + + KE L+ +++R+ L++F + + +
Sbjct: 379 QDESTVNEPKTRRPLLILDREKFLNKE----LFLDEIAREIYEFTLSEFKDLNSDTNYMI 434
Query: 297 INLIDVYCLFNRAR--GTALISPDDLSQACSLWEKFDV-PVMLRKFDSGVMAIQSK 349
I L+D+Y ++N++ GT LISP ++ +AC +E + + L K + ++ + S+
Sbjct: 435 ITLVDLYAMYNKSMRIGTGLISPMEMREACERFEHLGLNELKLVKVNKRILCVTSE 490
>sp|A8ETK6|RPOA_ARCB4 DNA-directed RNA polymerase subunit alpha OS=Arcobacter butzleri
(strain RM4018) GN=rpoA PE=3 SV=1
Length = 332
Score = 33.5 bits (75), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Query: 20 LVPNEVECNLLSNVDIEHDQDDAVSFPPLKSGHFILTTH--RLLFLSSSCSSTAVAIPLS 77
+P EVE +S D + +S P + G I H R L LSSS +A+ +
Sbjct: 9 FLPTEVEIEAIS------DNEAKISAYPFEDGFAITLAHPLRRLLLSSSVGCAPIAVKIE 62
Query: 78 AITHIFSSKRSL 89
+H F S R +
Sbjct: 63 GASHEFDSLRGM 74
>sp|Q06850|CDPK1_ARATH Calcium-dependent protein kinase 1 OS=Arabidopsis thaliana GN=CPK1
PE=1 SV=1
Length = 610
Score = 32.7 bits (73), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 67/144 (46%), Gaps = 22/144 (15%)
Query: 213 MNKAKEMVM--LAEKMRQKLLAGSSSQSNSANDEELG--SKEEMQDWLLSVG-------- 260
MNK K+M + +AE + ++ +AG N + ++ G + EE++ L VG
Sbjct: 433 MNKFKKMALRVIAESLSEEEIAGLKEMFNMIDADKSGQITFEELKAGLKRVGANLKESEI 492
Query: 261 --IVSPVTKESAGALYHQQLSRQLADFVKIPLERAGGMINLIDVYCLFNRARGTALISPD 318
++ +++G + +++ KI E +L + F++ G+ I+PD
Sbjct: 493 LDLMQAADVDNSGTIDYKEFIAATLHLNKIERED-----HLFAAFTYFDKD-GSGYITPD 546
Query: 319 DLSQACSLWEKFDVPV--MLRKFD 340
+L QAC + DV + ++R D
Sbjct: 547 ELQQACEEFGVEDVRIEELMRDVD 570
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.130 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 130,275,806
Number of Sequences: 539616
Number of extensions: 5052518
Number of successful extensions: 15763
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 15721
Number of HSP's gapped (non-prelim): 16
length of query: 370
length of database: 191,569,459
effective HSP length: 119
effective length of query: 251
effective length of database: 127,355,155
effective search space: 31966143905
effective search space used: 31966143905
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)