Query 017530
Match_columns 370
No_of_seqs 167 out of 248
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 15:55:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017530.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017530hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w7p_D VPS36P, YLR417W; ESCRT- 100.0 3E-77 1E-81 617.7 10.7 340 4-365 1-503 (566)
2 3cuq_B Vacuolar protein-sortin 100.0 3.3E-47 1.1E-51 354.1 12.3 161 197-365 1-163 (218)
3 2hth_B Vacuolar protein sortin 100.0 1E-34 3.6E-39 252.8 15.5 126 16-153 9-134 (140)
4 2cay_A VPS36 PH domain, vacuol 100.0 4.3E-33 1.5E-37 243.7 11.8 129 4-153 9-138 (145)
5 3cuq_A Vacuolar-sorting protei 100.0 1.1E-30 3.7E-35 244.1 13.8 146 205-365 8-163 (234)
6 1u5t_A Appears to BE functiona 100.0 4E-30 1.4E-34 240.3 10.0 168 180-366 2-177 (233)
7 1u5t_B Defective in vacuolar p 100.0 9.9E-29 3.4E-33 221.3 11.5 98 265-365 1-108 (169)
8 1lw3_A Myotubularin-related pr 97.2 0.0015 5.1E-08 69.0 11.0 68 13-86 74-142 (657)
9 1zsq_A Myotubularin-related pr 97.2 0.0017 5.9E-08 67.1 11.1 67 14-86 3-70 (528)
10 3hsa_A Pleckstrin homology dom 96.5 0.0073 2.5E-07 51.1 7.7 101 12-147 20-124 (126)
11 1pfj_A TFIIH basal transcripti 96.3 0.036 1.2E-06 45.6 10.2 52 49-106 20-71 (108)
12 1zyi_A Methylosome subunit pic 96.1 0.0052 1.8E-07 54.6 4.7 79 17-105 14-94 (171)
13 1y5o_A TFB1, RNA polymerase II 93.5 0.41 1.4E-05 39.6 8.9 93 48-148 11-109 (115)
14 3b77_A Uncharacterized protein 91.4 0.59 2E-05 42.0 7.8 69 17-103 19-95 (193)
15 2yf0_A Myotubularin-related pr 90.7 0.49 1.7E-05 48.6 7.6 55 27-86 6-60 (512)
16 2xvc_A ESCRT-III, SSO0910; cel 58.1 13 0.00044 27.0 4.1 36 290-332 19-54 (59)
17 3a4c_A DNA replication factor 55.5 81 0.0028 25.5 10.7 83 281-365 17-101 (106)
18 2k9l_A RNA polymerase sigma fa 43.3 31 0.0011 25.8 4.5 44 280-330 31-75 (76)
19 2k02_A Ferrous iron transport 38.1 48 0.0017 25.6 5.0 42 294-342 14-55 (87)
20 3htu_A Vacuolar protein-sortin 37.5 55 0.0019 25.0 5.1 62 275-339 7-70 (79)
21 3cvf_A Homer-3, homer protein 36.9 69 0.0024 24.5 5.6 54 195-264 18-79 (79)
22 2dg5_A Gamma-glutamyltranspept 32.2 20 0.00068 35.0 2.3 54 273-331 217-287 (366)
23 2acm_A Mucin-1; auto-catalytic 31.9 32 0.0011 25.1 2.7 26 271-297 31-56 (66)
24 2k9m_A RNA polymerase sigma fa 30.7 56 0.0019 27.0 4.5 46 280-332 22-68 (130)
25 4e40_A Putative uncharacterize 29.7 28 0.00096 31.6 2.6 48 278-328 111-163 (252)
26 3cve_A Homer protein homolog 1 28.8 1.6E+02 0.0054 22.1 6.3 52 195-262 12-71 (72)
27 2qby_A CDC6 homolog 1, cell di 27.5 2.3E+02 0.0077 25.8 8.7 74 295-369 304-386 (386)
28 3cuq_C Vacuolar protein-sortin 25.6 91 0.0031 27.3 5.2 79 251-331 76-160 (176)
29 3mfb_A Uncharacterized protein 25.3 59 0.002 28.1 3.8 36 314-349 2-40 (157)
30 1xb4_A VPS25, hypothetical 23. 24.6 1.2E+02 0.0041 27.1 5.9 68 275-345 128-199 (202)
31 3tqn_A Transcriptional regulat 24.3 2.5E+02 0.0086 21.8 7.7 66 273-347 9-75 (113)
32 1urq_A M-tomosyn isoform; tran 23.2 2.1E+02 0.0072 20.6 6.0 39 183-228 15-53 (63)
33 1vd2_A Protein kinase C, IOTA 23.2 2.2E+02 0.0075 22.0 6.4 55 272-341 25-89 (89)
34 3mwm_A ZUR, putative metal upt 23.1 3E+02 0.01 22.3 7.8 53 292-347 25-77 (139)
35 4hhu_A OR280; engineered prote 22.8 97 0.0033 25.7 4.4 29 120-149 79-107 (170)
36 4hhu_A OR280; engineered prote 22.5 1.3E+02 0.0045 24.9 5.2 84 125-227 3-112 (170)
37 2pjp_A Selenocysteine-specific 22.1 2.6E+02 0.009 22.0 7.1 71 252-334 40-111 (121)
38 3icj_A Uncharacterized metal-d 21.9 95 0.0033 31.4 5.2 58 310-369 321-393 (534)
39 3by6_A Predicted transcription 20.0 3.3E+02 0.011 21.6 7.8 65 274-347 12-77 (126)
No 1
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=100.00 E-value=3e-77 Score=617.67 Aligned_cols=340 Identities=19% Similarity=0.310 Sum_probs=91.1
Q ss_pred CCCCCcccccCCCCceeeCCceEEEEecceEEeeCCCCCCCCCCCCceEEEEeeceeEEeeCCCC-CceEEeeccceeee
Q 017530 4 NNFFLPASVTSSGRPVLVPNEVECNLLSNVDIEHDQDDAVSFPPLKSGHFILTTHRLLFLSSSCS-STAVAIPLSAITHI 82 (370)
Q Consensus 4 ~~~~~~~~lT~sgrpvL~~~E~~l~~~~~V~Ly~g~~~~~~~~~~~~G~l~LTTHRIiw~d~~~~-~~slslpL~~V~~~ 82 (370)
|+||+++++|+|+||+|.+||++|+++|+|+||+|++| +++||+|++|||||||||+|..++ +.+++|||+.|.++
T Consensus 1 m~~~~~~~~t~s~rp~L~~~E~~l~vqd~VgLY~Gk~K---i~~~q~G~~yLTShRiiyvD~~~p~~~s~~l~L~~I~~~ 77 (566)
T 1w7p_D 1 MEYWHYVETTSSGQPLLREGEKDIFIDQSVGLYHGKSK---ILQRQRGRIFLTSQRIIYIDDAKPTQNSLGLELDDLAYV 77 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCccccccccccCCcccCCCceEEEeecccccccCCcC---CccccCceEEEEeeeEEEecCCCCcceEEEEEhHHccee
Confidence 68999999999999999999999999999999999985 899999999999999999999874 48999999999999
Q ss_pred cccCCCcccccCCCceeeeeccCCCCC----------------C--------------CC--------------------
Q 017530 83 FSSKRSLKSVFHSPRFRFQVSATPDNR----------------I--------------FD-------------------- 112 (370)
Q Consensus 83 ~~~~~~~~~~f~s~kI~~~l~~~P~~~----------------~--------------~~-------------------- 112 (370)
+...+++ .+||||++++.+++.++ | ++
T Consensus 78 e~~agfl---ksSpKI~L~l~~~~~~~~~~~~~~~~~~~~~~tWvC~ICsfsN~~~~~f~~~~~~~p~C~~CGi~p~~~~ 154 (566)
T 1w7p_D 78 NYSSGFL---TRSPRLILFFKDPSSKDELGKSAETASADVVSTWVCPICMVSNETQGEFTKDTLPTPICINCGVPADYEL 154 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeeeccc---cCCCceEEeecCcccccccCCCCCCcccccccceeccccccCCCCCCCCCcccCCCCcccccCCCCchhh
Confidence 9998874 47999998776433111 0 00
Q ss_pred -----------------------------------------------------C--------------------------
Q 017530 113 -----------------------------------------------------S-------------------------- 113 (370)
Q Consensus 113 -----------------------------------------------------~-------------------------- 113 (370)
.
T Consensus 155 ~k~~i~~~~~~~~~~~~~~~~~~~~~~~CP~CTF~NHPsl~~CEiCg~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (566)
T 1w7p_D 155 TKSSINCSNAIDPNANPQNQFGVNSENICPACTFANHPQIGNCEICGHRLPNASKVRSKLNRLNFHDSRVHIELEKNSLA 234 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhhhccccCCCcccCccccccccCCCCCcccccCChhhhcccccCCcCCCcccccccccccccccccccccccccccc
Confidence 0
Q ss_pred ---CCCCc------cCCcccEEEEEEecCCChhhHHHHHHHHHhhcccccccCCCCCCCCCcc------ccc--------
Q 017530 114 ---DPGRV------TGLRSVVITVVVRGKGDWELFLSKMWECWRGRAWAWETTPSETGPASAS------ASA-------- 170 (370)
Q Consensus 114 ---~pg~~------~~s~~~~ikLSFr~~G~~~~F~~~L~~aL~~k~W~~~~~~~~~~~~~~~------~~~-------- 170 (370)
.|+|. ..+...+|||||| +||.+.||++|+++|.+|+|+ ..++..+.++.. ...
T Consensus 235 ~~~sp~p~~~s~~~~~~~~~~iKLSFR-~gg~~~F~~~L~~aL~~~~W~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 311 (566)
T 1w7p_D 235 RNKSSHSALSSSSSTGSSTEFVQLSFR-KSDGVLFSQATERALENILTE--KNKHIFNQNVVSVNGVDMRKGASSHEYNN 311 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCCCcccccccCCCccCceEEEEEc-CCCchHHHHHHHHHHHHHHhh--hCCCccCCCcccccccccccccccccccc
Confidence 01111 0113469999999 555699999999999999998 555432211100 000
Q ss_pred cccCCCCcccccchhhhhccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccccccHH
Q 017530 171 SLYASDGSVRMVGVGGLLRKEQEMWESTDRSLQEAFQDLNALMNKAKEMVMLAEKMRQKLLAGSSSQSNSANDEELGSKE 250 (370)
Q Consensus 171 ~~~~~~~~~~~~GI~gi~r~~~~~~~~~~~~l~~af~DL~~LM~~Akemv~la~~~~~ki~~~~~~~~~~~~de~~~~~~ 250 (370)
..+......+++||+||+|+.++++++++..|++||+||++||++|||||+||+++++++++++.. ++++++.....
T Consensus 312 ~~~~~~~~~~~~GI~gler~~e~~~~~~~~~i~~Af~DL~~LM~~AkemV~La~~~~~~~~~~~~~---~s~~~~~~e~~ 388 (566)
T 1w7p_D 312 EVPFIETKLSRIGISSLEKSRENQLLNNDILFNNALTDLNKLMSLATSIERLYKNSNITMKTKTLN---LQDESTVNEPK 388 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccCcccCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcccC---CCCCccchhhH
Confidence 000022234679999999999999999999999999999999999999999999999999876432 22222211123
Q ss_pred HHHHHHHhcCCcCccccCcc--hhhhHHHHHHHHHHHhhchh----cc-cCceeehHHHHHHHHHh-h-cCCCCCHHHHH
Q 017530 251 EMQDWLLSVGIVSPVTKESA--GALYHQQLSRQLADFVKIPL----ER-AGGMINLIDVYCLFNRA-R-GTALISPDDLS 321 (370)
Q Consensus 251 ~~~s~l~slGi~~pvt~~~~--~~~y~~eLarqlae~l~~~l----~k-~gGmitL~dl~~~~NRa-R-G~eLvSP~Dl~ 321 (370)
+++++| |||++++ +++||+||||||+|||.... ++ +||||+|+||||+|||| | |++||||+||+
T Consensus 389 ~~~s~L-------~Vtrd~~~s~~~f~~ELA~qI~E~c~~~~~~~l~~~nGGmItL~DL~~~~NRa~R~g~elISp~Dll 461 (566)
T 1w7p_D 389 TRRPLL-------ILDREKFLNKELFLDEIAREIYEFTLSEFKDLNSDTNYMIITLVDLYAMYNKSMRIGTGLISPMEMR 461 (566)
T ss_dssp --------------CCSSCCCCHHHHHHHHHHHHHHHHHHTTCCSSCSCCCCEEEHHHHHHHHHHHTTTTTCCCCHHHHH
T ss_pred hhHhhc-------ccchhhcCChhHHHHHHHHHHHHHHHhhhcccchhcCcCeEEHHHHHHHHHHhccCCCCccCHHHHH
Confidence 566666 9999954 69999999999999998776 77 99999999999999999 9 89999999999
Q ss_pred HHHHhhhhcCCCeE-EEEeCCceEEEEcCCCChhHHHHHHHhhhh
Q 017530 322 QACSLWEKFDVPVM-LRKFDSGVMAIQSKSHSDEESMMERIRFLG 365 (370)
Q Consensus 322 ~Ac~~~~~l~lp~~-lr~f~SG~~Vvq~~~~sde~~~~~r~~~l~ 365 (370)
+||++|+.|++|++ |++|+||++|+ +.+++ +.+ ..+|.+++
T Consensus 462 ~A~~~le~Lg~~~~~L~~~~sgvlVv-s~~~~-~~~-~~~il~l~ 503 (566)
T 1w7p_D 462 EACERFEHLGLNELKLVKVNKRILCV-TSEKF-DVV-KEKLVDLI 503 (566)
T ss_dssp HHHTTGGGGTCTTCEEEECSSSCEEE-ESSCH-HHH-HHHHHHHH
T ss_pred HHHHHHHHcCCCeEEEEEECCEEEEE-cCCCc-hHH-HHHHHHHH
Confidence 99999999999999 99999999998 88887 777 88888765
No 2
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=100.00 E-value=3.3e-47 Score=354.05 Aligned_cols=161 Identities=45% Similarity=0.777 Sum_probs=140.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccccccHHHHHHHHHhcCCcCccccCc--chhhh
Q 017530 197 STDRSLQEAFQDLNALMNKAKEMVMLAEKMRQKLLAGSSSQSNSANDEELGSKEEMQDWLLSVGIVSPVTKES--AGALY 274 (370)
Q Consensus 197 ~~~~~l~~af~DL~~LM~~Akemv~la~~~~~ki~~~~~~~~~~~~de~~~~~~~~~s~l~slGi~~pvt~~~--~~~~y 274 (370)
+|+..|++||+||++||.+|||||+||+++++|+++.+ ++++++|. .+|++||+++||++|||+++ ++++|
T Consensus 1 ~~~~~~~~af~DL~~LM~~Ak~mv~la~~~~~~~~~~~---~~~~~~e~----~~f~~m~~slGvd~Pl~~~~~~s~~~f 73 (218)
T 3cuq_B 1 ETDKNISEAFEDLSKLMIKAKEMVELSKSIANKIKDKQ---GDITEDET----IRFKSYLLSMGIANPVTRETYGSGTQY 73 (218)
T ss_dssp ---CCSHHHHHHHHHHHHHHHHHHHHHHGGGCC-------------CCS----HHHHHHHHHHTCCCHHHHTTSSCSCHH
T ss_pred CcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccC---CCCCchHH----HHHHHHHHHcCCCCcchhhccCcccHH
Confidence 46788999999999999999999999999999998763 33445553 48999999999999999985 36999
Q ss_pred HHHHHHHHHHHhhchhcccCceeehHHHHHHHHHhhcCCCCCHHHHHHHHHhhhhcCCCeEEEEeCCceEEEEcCCCChh
Q 017530 275 HQQLSRQLADFVKIPLERAGGMINLIDVYCLFNRARGTALISPDDLSQACSLWEKFDVPVMLRKFDSGVMAIQSKSHSDE 354 (370)
Q Consensus 275 ~~eLarqlae~l~~~l~k~gGmitL~dl~~~~NRaRG~eLvSP~Dl~~Ac~~~~~l~lp~~lr~f~SG~~Vvq~~~~sde 354 (370)
|+||||||+|||...++++||||+|+||||+||||||++||||+||++||++|++|++||+|++|+||++|||+++++++
T Consensus 74 ~~ELa~qi~e~c~~~~~~~GG~I~L~dl~~~~nraRG~~lVSp~Dl~~A~~~l~~Lg~~~~l~~~~sg~~vvqs~~~~~~ 153 (218)
T 3cuq_B 74 HMQLAKQLAGILQVPLEERGGIMSLTEVYCLVNRARGMELLSPEDLVNACKMLEALKLPLRLRVFDSGVMVIELQSHKEE 153 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSEEEHHHHHHHHHHTCSSSCCCHHHHHHHHHTTTTTTCSEEEEECTTSBEEEEETTCCGG
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEEEECCCcEEEEcCCCchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhh
Q 017530 355 ESMMERIRFLG 365 (370)
Q Consensus 355 ~~~~~r~~~l~ 365 (370)
.+ .++|.+++
T Consensus 154 ~~-~~~il~~~ 163 (218)
T 3cuq_B 154 EM-VASALETV 163 (218)
T ss_dssp GG-HHHHHHHH
T ss_pred HH-HHHHHHHH
Confidence 99 99987765
No 3
>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A
Probab=100.00 E-value=1e-34 Score=252.78 Aligned_cols=126 Identities=21% Similarity=0.314 Sum_probs=116.6
Q ss_pred CCceeeCCceEEEEecceEEeeCCCCCCCCCCCCceEEEEeeceeEEeeCCCCCceEEeeccceeeecccCCCcccccCC
Q 017530 16 GRPVLVPNEVECNLLSNVDIEHDQDDAVSFPPLKSGHFILTTHRLLFLSSSCSSTAVAIPLSAITHIFSSKRSLKSVFHS 95 (370)
Q Consensus 16 grpvL~~~E~~l~~~~~V~Ly~g~~~~~~~~~~~~G~l~LTTHRIiw~d~~~~~~slslpL~~V~~~~~~~~~~~~~f~s 95 (370)
|||+|.+||++|+++++|+||+|++| ++|++|+||||||||||+|+++...|++|||+.|.+++.++++ +++|
T Consensus 9 ~~p~L~~~E~il~~~~~V~Ly~g~~k----~~~k~G~l~LTshRli~~d~~~~~~s~~lpl~~v~~~e~~~~~---f~~s 81 (140)
T 2hth_B 9 TSGLLEINETLVIQQRGVRIYDGEEK----IKFDAGTLLLSTHRLIWRDQKNHECCMAILLSQIVFIEEQAAG---IGKS 81 (140)
T ss_dssp CCSCCCTTCCEEEEEEEEEEEETTCS----SCCCCEEEEEESSEEEEEETTCCSCCEEEEGGGEEEEEEECCT---TSSC
T ss_pred CCCccCCCceEEEEcCCEEEecCCCC----CCCcCCEEEEecCEEEEecCCCCceEEEEEhHHeeeeeeeccc---cccC
Confidence 99999999999999999999999986 8999999999999999999988888999999999999999987 5689
Q ss_pred CceeeeeccCCCCCCCCCCCCCccCCcccEEEEEEecCCChhhHHHHHHHHHhhcccc
Q 017530 96 PRFRFQVSATPDNRIFDSDPGRVTGLRSVVITVVVRGKGDWELFLSKMWECWRGRAWA 153 (370)
Q Consensus 96 ~kI~~~l~~~P~~~~~~~~pg~~~~s~~~~ikLSFr~~G~~~~F~~~L~~aL~~k~W~ 153 (370)
+||++++.++|.+ +.|||.+.+++.+|||||| +||.++|+++|.++|.+|+|+
T Consensus 82 ~Ki~l~l~~~~~~----~~~gp~~~s~~~~~kLsFr-~Gg~~eF~~~L~~al~~k~W~ 134 (140)
T 2hth_B 82 AKIVVHLHPAPPN----KEPGPFQSSKNSYIKLSFK-EHGQIEFYRRLSEEMTQRRWE 134 (140)
T ss_dssp CEEEEEECCCCCC----SSSCCCSTTSCCEEEEEET-TSCHHHHHHHHHHHHHHCCC-
T ss_pred ceEEEEecCCCcc----CCCCCcccccCcEEEEEEc-CCCChHHHHHHHHHHHHhhhc
Confidence 9999999987754 5799998999999999999 566799999999999999999
No 4
>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12
Probab=100.00 E-value=4.3e-33 Score=243.75 Aligned_cols=129 Identities=17% Similarity=0.257 Sum_probs=116.1
Q ss_pred CCCCCcccccCCCCceeeCCceEEEEecceEEeeCCCCCCCCCCCCceEEEEeeceeEEeeCCCCC-ceEEeeccceeee
Q 017530 4 NNFFLPASVTSSGRPVLVPNEVECNLLSNVDIEHDQDDAVSFPPLKSGHFILTTHRLLFLSSSCSS-TAVAIPLSAITHI 82 (370)
Q Consensus 4 ~~~~~~~~lT~sgrpvL~~~E~~l~~~~~V~Ly~g~~~~~~~~~~~~G~l~LTTHRIiw~d~~~~~-~slslpL~~V~~~ 82 (370)
++.|+++++|+||||+|.|||++|+.+++|+||+|++| ++++++|+||||||||||+|.+++. .|+++||..|.++
T Consensus 9 ~~~~~~~~~t~s~rp~L~~~E~il~~~d~V~Ly~g~~k---~~~~k~G~lyLTshRIIyv~~~~~~~~SfslPL~~v~~~ 85 (145)
T 2cay_A 9 MEYWHYVETTSSGQPLLREGEKDIFIDQSVGLYHGKSK---ILQRQRGRIFLTSQRIIYIDDAKPTQNSLGLELDDLAYV 85 (145)
T ss_dssp GGTCEECCBCTTSCBCCCTTCCEEEEEEEEEEEETTEE---CTTCSSEEEEEESSEEEEEESSCHHHHCEEEEGGGEEEE
T ss_pred hhhcchhhhccCCCcccCCCCEEEEEcCCcceecCCCC---CcCCCccEEEEEcCeEEEecCCCCcceEEEeEhHheeee
Confidence 57899999999999999999999999999999999985 6899999999999999999987754 7999999999999
Q ss_pred cccCCCcccccCCCceeeeeccCCCCCCCCCCCCCccCCcccEEEEEEecCCChhhHHHHHHHHHhhcccc
Q 017530 83 FSSKRSLKSVFHSPRFRFQVSATPDNRIFDSDPGRVTGLRSVVITVVVRGKGDWELFLSKMWECWRGRAWA 153 (370)
Q Consensus 83 ~~~~~~~~~~f~s~kI~~~l~~~P~~~~~~~~pg~~~~s~~~~ikLSFr~~G~~~~F~~~L~~aL~~k~W~ 153 (370)
+.++++ +.+++||++++.+. | +++.+||||||+ ||+++|+++|.+++.++.||
T Consensus 86 e~~~~~---fg~s~Ki~l~~~p~----~----------~~~~~~KLsFk~-GGa~eF~~~l~~al~~~~~~ 138 (145)
T 2cay_A 86 NYSSGF---LTRSPRLILFFKDP----S----------SSTEFVQLSFRK-SDGVLFSQATERALENILTE 138 (145)
T ss_dssp EEECSS---SSSSCEEEEEESSC----S----------STTCCEEEEESS-SCCHHHHHHHHHHHHHHHHC
T ss_pred eEEcCc---cccCceEEEEecCC----C----------CCceEEEEEEcC-CCchHHHHHHHHHHHHHHHh
Confidence 999997 45789998877643 2 446899999995 55699999999999999999
No 5
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=99.97 E-value=1.1e-30 Score=244.05 Aligned_cols=146 Identities=19% Similarity=0.249 Sum_probs=132.6
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCCCCCCCcccccccHHHHHHHHHhcCCcCccccCc------ch-hhhHH
Q 017530 205 AFQDLNALMNKAKE-MVMLAEKMRQKLLAGSSSQSNSANDEELGSKEEMQDWLLSVGIVSPVTKES------AG-ALYHQ 276 (370)
Q Consensus 205 af~DL~~LM~~Ake-mv~la~~~~~ki~~~~~~~~~~~~de~~~~~~~~~s~l~slGi~~pvt~~~------~~-~~y~~ 276 (370)
.++.|..+|+.+++ |+.||.+|+..|++++ .++.+|++||+++||+ |+++++ .| ++||+
T Consensus 8 ~~~~~~~Ql~~F~~~L~~FA~kH~~eI~~dp------------~fR~~F~~mc~siGVD-Plas~kg~ws~~lG~gdfy~ 74 (234)
T 3cuq_A 8 QLAQMSKQLDMFKTNLEEFASKHKQEIRKNP------------EFRVQFQDMCATIGVD-PLASGKGFWSEMLGVGDFYY 74 (234)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHCH------------HHHHHHHHHHHHHTCC-TTSCTTSHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccccccCH------------HHHHHHHHHHHHcCCC-cccCCcchhhhhcCcchHHH
Confidence 67789999999999 9999999999999863 2788999999999999 999874 13 89999
Q ss_pred HHHHHHHHHhhchhcccCceeehHHHHHHHHHhhcC--CCCCHHHHHHHHHhhhhcCCCeEEEEeCCceEEEEcCCCChh
Q 017530 277 QLSRQLADFVKIPLERAGGMINLIDVYCLFNRARGT--ALISPDDLSQACSLWEKFDVPVMLRKFDSGVMAIQSKSHSDE 354 (370)
Q Consensus 277 eLarqlae~l~~~l~k~gGmitL~dl~~~~NRaRG~--eLvSP~Dl~~Ac~~~~~l~lp~~lr~f~SG~~Vvq~~~~sde 354 (370)
|||+||+|+|..+.+++||||+|.||||++||+||. ++|||+|+++||++|+.||.++++++|+ |+++||+.++..+
T Consensus 75 eLavqIvEvC~~tr~~nGGli~L~el~~~~~r~Rg~~~~~IS~dDi~rAik~L~~LG~g~~v~~~~-g~~~VqSvp~el~ 153 (234)
T 3cuq_A 75 ELGVQIIEVCLALKHRNGGLITLEELHQQVLKGRGKFAQDVSQDDLIRAIKKLKALGTGFGIIPVG-GTYLIQSVPAELN 153 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHTTTTCCSSCCHHHHHHHHHHHGGGBTTCEEEEET-TEEEEECSCCCCC
T ss_pred HHHHHHHHHHHHHHHhcCCeeEHHHHHHHHHHhcCCccCccCHHHHHHHHHHHHhcCCCeEEEEEC-CEEEEEeCCCccc
Confidence 999999999999999999999999999999999999 9999999999999999999899999999 9999999998877
Q ss_pred HHHHHHHhhhh
Q 017530 355 ESMMERIRFLG 365 (370)
Q Consensus 355 ~~~~~r~~~l~ 365 (370)
.. ..++.+++
T Consensus 154 ~D-~~~vLela 163 (234)
T 3cuq_A 154 MD-HTVVLQLA 163 (234)
T ss_dssp HH-HHHHHHHH
T ss_pred hH-HHHHHHHH
Confidence 77 77777665
No 6
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=99.96 E-value=4e-30 Score=240.26 Aligned_cols=168 Identities=14% Similarity=0.209 Sum_probs=136.2
Q ss_pred cccchhhhhccHHHHHHhhhHHHHH-HHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCCCCCCCcccccccHHHHHHHHH
Q 017530 180 RMVGVGGLLRKEQEMWESTDRSLQE-AFQDLNALMNKAKE-MVMLAEKMRQKLLAGSSSQSNSANDEELGSKEEMQDWLL 257 (370)
Q Consensus 180 ~~~GI~gi~r~~~~~~~~~~~~l~~-af~DL~~LM~~Ake-mv~la~~~~~ki~~~~~~~~~~~~de~~~~~~~~~s~l~ 257 (370)
|++||+||.+..+++-++.+..+++ .++.|+.+|+.+++ |+.||.+|+..|++++ .++.+|++||+
T Consensus 2 r~~G~~a~~~~~~~~~~~~g~~l~~~~~~~l~~Ql~~F~~~L~~FA~kHk~eI~~dp------------~fR~~F~~mc~ 69 (233)
T 1u5t_A 2 KQFGLAAFDELKDGKYNDVNKTILEKQSVELRDQLMVFQERLVEFAKKHNSELQASP------------EFRSKFMHMCS 69 (233)
T ss_dssp ------------------CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCH------------HHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccCH------------HHHHHHHHHHH
Confidence 5689999994444555578888887 99999999999999 9999999988887653 27889999999
Q ss_pred hcCCcCccc-cCc----ch-hhhHHHHHHHHHHHhhchhcccCceeehHHHHHHHHHhhcCCCCCHHHHHHHHHhhhhcC
Q 017530 258 SVGIVSPVT-KES----AG-ALYHQQLSRQLADFVKIPLERAGGMINLIDVYCLFNRARGTALISPDDLSQACSLWEKFD 331 (370)
Q Consensus 258 slGi~~pvt-~~~----~~-~~y~~eLarqlae~l~~~l~k~gGmitL~dl~~~~NRaRG~eLvSP~Dl~~Ac~~~~~l~ 331 (370)
++||+ ||+ +++ .| ++||+|||+||+|+|..+.+++||||+|.||||++||+ ++|||+|+++||++|+.|
T Consensus 70 siGVD-PLa~s~kg~~~lg~gdfy~eLavqIvEvC~~tr~~nGGli~l~el~~~~~r~---~~IS~dDi~rAik~L~~L- 144 (233)
T 1u5t_A 70 SIGID-PLSLFDRDKHLFTVNDFYYEVCLKVIEICRQTKDMNGGVISFQELEKVHFRK---LNVGLDDLEKSIDMLKSL- 144 (233)
T ss_dssp HHTCC-HHHHTTSSGGGTTHHHHHHHHHHHHHHHHHHHTTTSSSCEEHHHHHHTTTTT---TTCCHHHHHHHHHHHTTT-
T ss_pred HcCCC-CCccCCccccccCcchHHHHHHHHHHHHHHHHHHhcCCeeEHHHHHHHHHhh---cCCCHHHHHHHHHHhhhc-
Confidence 99999 999 542 23 89999999999999999999999999999999999999 999999999999999999
Q ss_pred CCeEEEEeCCceEEEEcCCCChhHHHHHHHhhhhc
Q 017530 332 VPVMLRKFDSGVMAIQSKSHSDEESMMERIRFLGV 366 (370)
Q Consensus 332 lp~~lr~f~SG~~Vvq~~~~sde~~~~~r~~~l~~ 366 (370)
.++++..++ |+++||+.++..+.. ..++.+++.
T Consensus 145 ~gf~v~~v~-g~~~vqsvp~el~~D-~~~vLe~a~ 177 (233)
T 1u5t_A 145 ECFEIFQIR-GKKFLRSVPNELTSD-QTKILEICS 177 (233)
T ss_dssp CCCCEEEET-TEEEECCSSSCCCTT-HHHHHHTTT
T ss_pred cCeEEEEEC-CEEEEEeCCCccchH-HHHHHHHHH
Confidence 899998887 999999999998888 888877653
No 7
>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=99.95 E-value=9.9e-29 Score=221.33 Aligned_cols=98 Identities=24% Similarity=0.492 Sum_probs=90.0
Q ss_pred cccCcc--hhhhHHHHHHHHHHHhh---c-hhcccCc-eeehHHHHHHHHHh-h-cCCCCCHHHHHHHHHhhhhcCCC-e
Q 017530 265 VTKESA--GALYHQQLSRQLADFVK---I-PLERAGG-MINLIDVYCLFNRA-R-GTALISPDDLSQACSLWEKFDVP-V 334 (370)
Q Consensus 265 vt~~~~--~~~y~~eLarqlae~l~---~-~l~k~gG-mitL~dl~~~~NRa-R-G~eLvSP~Dl~~Ac~~~~~l~lp-~ 334 (370)
||++++ +++||+||||||+|||. . .++++|| ||+|+||||+|||| | |++||||+||++||++|++|++| +
T Consensus 1 vt~~~~~~~~~f~~ELa~qi~e~c~~~~~~~~~~~GG~~I~L~dl~~~~nra~R~g~~lISp~Dl~~A~~~l~~Lg~~~~ 80 (169)
T 1u5t_B 1 LDREKFLNKELFLDEIAREIYEFTLSEFKDLNSDTNYMIITLVDLYAMYNKSMRIGTGLISPMEMREACERFEHLGLNEL 80 (169)
T ss_dssp CCCSCCSSSTTHHHHHHHHHHHHHHTTTTTSSSCCCCCCEETTHHHHHHHHTTTSSSCCCCHHHHHHHHTTTGGGTCCSC
T ss_pred CchhhhcChhHHHHHHHHHHHHHHhhcchhhHHhcCceeEEHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHhcCCCeE
Confidence 688874 69999999999999999 5 8889999 99999999999999 9 89999999999999999999999 9
Q ss_pred EEEEeCCceEEEEcCCCChhHHHHHHHhhhh
Q 017530 335 MLRKFDSGVMAIQSKSHSDEESMMERIRFLG 365 (370)
Q Consensus 335 ~lr~f~SG~~Vvq~~~~sde~~~~~r~~~l~ 365 (370)
+|++|+||++|+ ...++|+ + .++|.+++
T Consensus 81 ~l~~~~sg~~V~-~~~~~d~-~-~~~il~~~ 108 (169)
T 1u5t_B 81 KLVKVNKRILCV-TSEKFDV-V-KEKLVDLI 108 (169)
T ss_dssp EEEEETTTEEEE-ESSCSHH-H-HHHHHHHH
T ss_pred EEEEECCeeEEE-eCCChhH-H-HHHHHHHH
Confidence 999999999999 7778876 6 77776654
No 8
>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A
Probab=97.20 E-value=0.0015 Score=68.97 Aligned_cols=68 Identities=19% Similarity=0.197 Sum_probs=51.7
Q ss_pred cCCCCceeeCCceEEEEecceEEeeCCCCCCCCCCCCceEEEEeeceeEEeeCCC-CCceEEeeccceeeecccC
Q 017530 13 TSSGRPVLVPNEVECNLLSNVDIEHDQDDAVSFPPLKSGHFILTTHRLLFLSSSC-SSTAVAIPLSAITHIFSSK 86 (370)
Q Consensus 13 T~sgrpvL~~~E~~l~~~~~V~Ly~g~~~~~~~~~~~~G~l~LTTHRIiw~d~~~-~~~slslpL~~V~~~~~~~ 86 (370)
+....+.|.|||.++...++|.+.... .+...|.|+||+|||||..... ...-+.+||.+|..++...
T Consensus 74 ~~~~~~~LLPGE~v~~~~~~V~~~~p~------~~~~~GtL~lTnyrLiF~~~~~~~~~~~~IPL~~I~~Iekv~ 142 (657)
T 1lw3_A 74 AEMEEPPLLPGENIKDMAKDVTYICPF------TGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVEKIG 142 (657)
T ss_dssp ---CCCCCCTTCCEEEEEEEEEEEETT------TEEEEEEEEEESSEEEEEESSSSSCEEEEEEGGGEEEEEEEC
T ss_pred ccCCCCccCCCeeEEEEeCCEEEecCC------CCceeEEEEEECCEEEEEecCCCcceEEEecccceEEEEecC
Confidence 344678899999999999999864322 2346899999999999997643 3445799999999998643
No 9
>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*
Probab=97.18 E-value=0.0017 Score=67.05 Aligned_cols=67 Identities=21% Similarity=0.207 Sum_probs=52.4
Q ss_pred CCCCceeeCCceEEEEecceEEeeCCCCCCCCCCCCceEEEEeeceeEEeeCCC-CCceEEeeccceeeecccC
Q 017530 14 SSGRPVLVPNEVECNLLSNVDIEHDQDDAVSFPPLKSGHFILTTHRLLFLSSSC-SSTAVAIPLSAITHIFSSK 86 (370)
Q Consensus 14 ~sgrpvL~~~E~~l~~~~~V~Ly~g~~~~~~~~~~~~G~l~LTTHRIiw~d~~~-~~~slslpL~~V~~~~~~~ 86 (370)
++..|.|.|||.++...++|.+.... .+...|+|+||+|||||...+. ...-+.+||.+|..++...
T Consensus 3 ~~~~~~lLpGE~i~~~~~~V~~~~~~------~~~~~GtL~lTn~rLiF~~~~~~~~~~~~iPL~~I~~vek~~ 70 (528)
T 1zsq_A 3 SMEEPPLLPGENIKDMAKDVTYICPF------TGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVEKIG 70 (528)
T ss_dssp -CCCCCCCTTCCEEEEEEEEEEEETT------TEEEEEEEEEESSEEEEEESSSSSCEEEEEEGGGEEEEEEEC
T ss_pred CCCCCccCCCCeEEEecCCEEEeCCC------CCceeEEEEEECCEEEEEccCCCccEEEEeeccceEEEEEcC
Confidence 34567899999999999999975322 2356999999999999997644 3445899999999998644
No 10
>3hsa_A Pleckstrin homology domain; YP_926556.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE MLY; 1.99A {Shewanella amazonensis SB2B} SCOP: b.55.1.13 PDB: 3dcx_A*
Probab=96.51 E-value=0.0073 Score=51.06 Aligned_cols=101 Identities=16% Similarity=0.133 Sum_probs=69.6
Q ss_pred ccCCCCceeeCCceEEEEecceEEeeCCCCCCCCCCCCceEEEEeeceeEEeeCCC--CCc--eEEeeccceeeecccCC
Q 017530 12 VTSSGRPVLVPNEVECNLLSNVDIEHDQDDAVSFPPLKSGHFILTTHRLLFLSSSC--SST--AVAIPLSAITHIFSSKR 87 (370)
Q Consensus 12 lT~sgrpvL~~~E~~l~~~~~V~Ly~g~~~~~~~~~~~~G~l~LTTHRIiw~d~~~--~~~--slslpL~~V~~~~~~~~ 87 (370)
+...-.+.|.+||.+...-.-+ .+.+.+|++|||.+|... ++. -.++|.+.|.++..+..
T Consensus 20 ~~~~~~~~L~~gE~I~~ayk~i----------------RD~~iFTnkRLI~vD~QG~TGkK~~~~siPY~sI~~~siETA 83 (126)
T 3hsa_A 20 LAAELSPILGDNEELQLAYXMV----------------RDLFVFTSXRLILIDXQGVTGXXVSYHSIPYXAIVHFQVETA 83 (126)
T ss_dssp HHHHHGGGSCTTCCEEEEEECS----------------SEEEEEESSEEEEEEEESTTSCEEEEEEEEGGGEEEEEEEEE
T ss_pred HHHHHHHhcCCCCEEEEEehhc----------------CceEEEccchheEEecCcCcccceEEEEeccceeeEEEEecc
Confidence 3444467888999887754332 467899999999999865 222 25999999999987655
Q ss_pred CcccccCCCceeeeeccCCCCCCCCCCCCCccCCcccEEEEEEecCCChhhHHHHHHHHH
Q 017530 88 SLKSVFHSPRFRFQVSATPDNRIFDSDPGRVTGLRSVVITVVVRGKGDWELFLSKMWECW 147 (370)
Q Consensus 88 ~~~~~f~s~kI~~~l~~~P~~~~~~~~pg~~~~s~~~~ikLSFr~~G~~~~F~~~L~~aL 147 (370)
.. +-....|.+.++..+ ..+++-|+.+-+..++++.|...+
T Consensus 84 G~--fDlDaElki~isg~~-----------------~pi~~~f~k~~di~~i~k~La~~v 124 (126)
T 3hsa_A 84 GT--FDMDAELXLWISGQH-----------------EPLVXELXRGTDVVGIQXTIARYA 124 (126)
T ss_dssp ST--TSCEEEEEEEETTCS-----------------SCEEEEECTTSCHHHHHHHHHHHH
T ss_pred cc--ccCCceEEEEEcCCc-----------------eEEEEeccCcccHHHHHHHHHHHh
Confidence 42 223455777765322 228999996666677777776654
No 11
>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B
Probab=96.26 E-value=0.036 Score=45.60 Aligned_cols=52 Identities=12% Similarity=0.167 Sum_probs=40.8
Q ss_pred CceEEEEeeceeEEeeCCCCCceEEeeccceeeecccCCCcccccCCCceeeeeccCC
Q 017530 49 KSGHFILTTHRLLFLSSSCSSTAVAIPLSAITHIFSSKRSLKSVFHSPRFRFQVSATP 106 (370)
Q Consensus 49 ~~G~l~LTTHRIiw~d~~~~~~slslpL~~V~~~~~~~~~~~~~f~s~kI~~~l~~~P 106 (370)
++|+|||++-||.|.+.......++++++.|.+....-+ +++||.+++-..+
T Consensus 20 ~dGtL~l~~d~i~W~p~~~~~~~vs~~~~~I~~qq~SP~------~k~KVqLqi~l~~ 71 (108)
T 1pfj_A 20 QDGALYLMAERIAWAPEGKDRFTISHMYADIKCQKISPE------GKAKIQLQLVLHA 71 (108)
T ss_dssp CBCEEEEETTEEEEECSSSSSCSEEEETTTCCCEEECCS------SSSSCEEEEECSS
T ss_pred CCceEEEEcceEEEccCCCCCceEEEehhhhhcceeCCC------CCccEEEEEEEeC
Confidence 469999999999999977766778999999987644323 5788888877654
No 12
>1zyi_A Methylosome subunit picln; PH domain, cell volume regulation, RNA splicing, translation; NMR {Canis lupus familiaris}
Probab=96.08 E-value=0.0052 Score=54.61 Aligned_cols=79 Identities=15% Similarity=0.209 Sum_probs=47.9
Q ss_pred CceeeCC--ceEEEEecceEEeeCCCCCCCCCCCCceEEEEeeceeEEeeCCCCCceEEeeccceeeecccCCCcccccC
Q 017530 17 RPVLVPN--EVECNLLSNVDIEHDQDDAVSFPPLKSGHFILTTHRLLFLSSSCSSTAVAIPLSAITHIFSSKRSLKSVFH 94 (370)
Q Consensus 17 rpvL~~~--E~~l~~~~~V~Ly~g~~~~~~~~~~~~G~l~LTTHRIiw~d~~~~~~slslpL~~V~~~~~~~~~~~~~f~ 94 (370)
.++.-|. |-+++.+.+|.++-++.. ...|.||+|+-||+|.+. ....++||..+|.-=-...-+ ..|.
T Consensus 14 ~~~~~p~~~E~v~~~~~~v~~vl~~~~------~g~GtLyVt~~~l~W~~~--~~~G~sI~YpsIsLHAIsrd~--~~~p 83 (171)
T 1zyi_A 14 KSFPPPGSAEGLRQQQPETEAVLNGKG------LGTGTLYIAESRLSWLDG--SGLGFSLEYPTISLHAVSRDL--NAYP 83 (171)
T ss_dssp -------------CBCSSEEEEBTTBC------CCEEEEEEETTEEEEEET--TTEEEEESSCCCSEEECCSSC--SSCC
T ss_pred ccCCCCCCccceEEEcCCEEEEECCCc------cCceEEEEEcCEEEEEcC--CCcEEEeecCeEEEEEEecCC--CCCC
Confidence 3555688 999999999999998742 368999999999999987 445688888887632211111 1345
Q ss_pred CCceeeeeccC
Q 017530 95 SPRFRFQVSAT 105 (370)
Q Consensus 95 s~kI~~~l~~~ 105 (370)
.+-|=+++...
T Consensus 84 ~~clY~Qld~~ 94 (171)
T 1zyi_A 84 REHLYVMVNAK 94 (171)
T ss_dssp SCCEEEEEECC
T ss_pred CceEEEEEecc
Confidence 56666676643
No 13
>1y5o_A TFB1, RNA polymerase II transcription factor B 73 kDa subunit; TFIIH, PH domain, phosphoinositides, VP16; NMR {Saccharomyces cerevisiae} SCOP: b.55.1.9 PDB: 2gs0_A 2k2u_A 2l2i_A 2lox_A*
Probab=93.48 E-value=0.41 Score=39.60 Aligned_cols=93 Identities=12% Similarity=0.122 Sum_probs=58.7
Q ss_pred CCceEEEEeec----eeEEeeCCCCCceEEeeccceeeecccCCCcccccCCCceeeeeccCCCC-CCCCCC-CCCccCC
Q 017530 48 LKSGHFILTTH----RLLFLSSSCSSTAVAIPLSAITHIFSSKRSLKSVFHSPRFRFQVSATPDN-RIFDSD-PGRVTGL 121 (370)
Q Consensus 48 ~~~G~l~LTTH----RIiw~d~~~~~~slslpL~~V~~~~~~~~~~~~~f~s~kI~~~l~~~P~~-~~~~~~-pg~~~~s 121 (370)
-++|.|+++.- -|.|..-.+ ...++|||..|.+..-... .++|+.+++-..+.. +- ... .|+....
T Consensus 11 Kk~G~lti~eD~~p~~l~W~p~~g-~~~isI~l~~It~LQqTp~------ts~KvmLKI~~k~~~~~~-~~~~~~~~~~~ 82 (115)
T 1y5o_A 11 KVSGIIAINEDVSPAELTWRSTDG-DKVHTVVLSTIDKLQATPA------SSEKMMLRLIGKVDESKK-RKDNEGNEVVP 82 (115)
T ss_dssp SCEEEEEEECSSSSCEEEEEESSS-SCEEEEESTTCSEEEECCT------TCSSEEEEEEECSCCSSS-CCCCSSCCSSC
T ss_pred ecccEEEEccCCCcceEEEEECCC-CccEEEEhhhhhhhhcCCC------CCCceEEEEEEecccccc-ccCCCcCCCCC
Confidence 46999999999 899998544 6679999999998755333 589988877655410 00 000 1112223
Q ss_pred cccEEEEEEecCCChhhHHHHHHHHHh
Q 017530 122 RSVVITVVVRGKGDWELFLSKMWECWR 148 (370)
Q Consensus 122 ~~~~ikLSFr~~G~~~~F~~~L~~aL~ 148 (370)
......|+|......+.+-..|...|.
T Consensus 83 ~p~~~~F~FtnR~~~d~IKd~Lq~iIa 109 (115)
T 1y5o_A 83 KPQRHMFSFNNRTVMDNIKMTLQQIIS 109 (115)
T ss_dssp CCEEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred CcceEEEEeCCHHHHHHHHHHHHHHHH
Confidence 346788999865544444444444443
No 14
>3b77_A Uncharacterized protein; pleckstrin-homology domain, structural genomics, joint cente structural genomics, JCSG; 2.42A {Exiguobacterium sibiricum} SCOP: b.55.1.13
Probab=91.37 E-value=0.59 Score=42.01 Aligned_cols=69 Identities=16% Similarity=0.252 Sum_probs=46.5
Q ss_pred CceeeC--CceEEEEecceEEeeCCCCCCCCCCCCceEEEEeeceeEEeeCCC---CCc-eEEeecc--ceeeecccCCC
Q 017530 17 RPVLVP--NEVECNLLSNVDIEHDQDDAVSFPPLKSGHFILTTHRLLFLSSSC---SST-AVAIPLS--AITHIFSSKRS 88 (370)
Q Consensus 17 rpvL~~--~E~~l~~~~~V~Ly~g~~~~~~~~~~~~G~l~LTTHRIiw~d~~~---~~~-slslpL~--~V~~~~~~~~~ 88 (370)
.+.|.| ||.+.+.-.-+ ...+.+|++|||.+|... .+. -.++|.+ .|.++..+..+
T Consensus 19 ~~~Ll~EdgE~I~~ayk~i----------------rD~~iFTNkRLI~vD~Qg~TGKK~~~~siPY~~~~I~~~siETAG 82 (193)
T 3b77_A 19 DDYVLHEDGEKIYFLIKSK----------------TDEYCFTNLALVHLDGESAVSSKRVLYRYPYAHYPIRHVMFETAG 82 (193)
T ss_dssp GGGSCGGGTCCEEEEEECS----------------SEEEEEESSEEEEEECCCC--CCCEEEEEETTTSCEEEEEEECCC
T ss_pred hhhccCCCCCEEeeeeeec----------------ceEEEEecchhheeccccccceeEEEEEeccCCCceeEEEEEecc
Confidence 455566 88877654322 337899999999999755 222 3599999 99999766554
Q ss_pred cccccCCCceeeeec
Q 017530 89 LKSVFHSPRFRFQVS 103 (370)
Q Consensus 89 ~~~~f~s~kI~~~l~ 103 (370)
. +.....|.+.+.
T Consensus 83 t--fDlDaElki~i~ 95 (193)
T 3b77_A 83 T--VDLDVEIKFEIG 95 (193)
T ss_dssp S--SCCEEEEEEEET
T ss_pred e--eccCccEEEEEc
Confidence 2 334555666654
No 15
>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}
Probab=90.69 E-value=0.49 Score=48.63 Aligned_cols=55 Identities=18% Similarity=0.153 Sum_probs=36.7
Q ss_pred EEEecceEEeeCCCCCCCCCCCCceEEEEeeceeEEeeCCCCCceEEeeccceeeecccC
Q 017530 27 CNLLSNVDIEHDQDDAVSFPPLKSGHFILTTHRLLFLSSSCSSTAVAIPLSAITHIFSSK 86 (370)
Q Consensus 27 l~~~~~V~Ly~g~~~~~~~~~~~~G~l~LTTHRIiw~d~~~~~~slslpL~~V~~~~~~~ 86 (370)
.-..+||.|++.-.+ ..+-..|+|+||+|||||.+... .-+-+|+..|..++...
T Consensus 6 ~~~v~~V~l~~~~~~---~~~~~~GtL~lTn~~LiF~~~~~--~e~wi~~~~I~~VeK~~ 60 (512)
T 2yf0_A 6 TTKVEQVKLLDRFST---SNKSLTGTLYLTATHLLFIDSHQ--KETWILHHHIASVEKLA 60 (512)
T ss_dssp EEEEEECCCC-----------CCEEEEEECSSEEEEEESSS--CEEEEEGGGEEEEEECC
T ss_pred cCccccEEEEeccCC---CCCceeEEEEEECCEEEEeCCCC--CceEecccceeEEEEec
Confidence 345688888764221 13466999999999999998432 34689999999997643
No 16
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=58.12 E-value=13 Score=26.99 Aligned_cols=36 Identities=6% Similarity=0.267 Sum_probs=29.2
Q ss_pred hcccCceeehHHHHHHHHHhhcCCCCCHHHHHHHHHhhhhcCC
Q 017530 290 LERAGGMINLIDVYCLFNRARGTALISPDDLSQACSLWEKFDV 332 (370)
Q Consensus 290 l~k~gGmitL~dl~~~~NRaRG~eLvSP~Dl~~Ac~~~~~l~l 332 (370)
+..+||++-+.+.=..|. |+++|++.+.+.|+.-|+
T Consensus 19 Ir~sGGildI~~~a~kyg-------V~kdeV~~~LrrLe~KGL 54 (59)
T 2xvc_A 19 IVNNGGFLDIEHFSKVYG-------VEKQEVVKLLEALKNKGL 54 (59)
T ss_dssp HHHTTSEEEHHHHHHHHC-------CCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCEEeHHHHHHHhC-------CCHHHHHHHHHHHHHCCC
Confidence 445889998888776663 799999999999998654
No 17
>3a4c_A DNA replication factor CDT1; alpha-beta structure, cell cycle, DNA- binding, nucleus, phosphoprotein, proto-oncogene, UBL conjugation; HET: DNA; 1.89A {Mus musculus} PDB: 2rqq_A*
Probab=55.46 E-value=81 Score=25.48 Aligned_cols=83 Identities=12% Similarity=0.109 Sum_probs=63.8
Q ss_pred HHHHHhhchh-cccCceeehHHHHHHHHHhhcCCCCCHHHHHHHHHhhhhcCCC-eEEEEeCCceEEEEcCCCChhHHHH
Q 017530 281 QLADFVKIPL-ERAGGMINLIDVYCLFNRARGTALISPDDLSQACSLWEKFDVP-VMLRKFDSGVMAIQSKSHSDEESMM 358 (370)
Q Consensus 281 qlae~l~~~l-~k~gGmitL~dl~~~~NRaRG~eLvSP~Dl~~Ac~~~~~l~lp-~~lr~f~SG~~Vvq~~~~sde~~~~ 358 (370)
+||.++...+ ...-+.+|+.++-++.-..--. .+||.|+.+=++++.++-.. +.+.....|.++==.++.+-.++ .
T Consensus 17 elArilR~vFvaEkK~vl~~e~~~~ki~~Syr~-~ls~~EmE~hl~lL~ellPdWls~~~vR~~~ylKl~k~~dl~~i-~ 94 (106)
T 3a4c_A 17 ELARVLRNVFVSERKPALTMEVVCARMVDSCQT-ALSPGEMEKHLVLLAELLPDWLSLHRIRTDTYVKLDKAVDLAGL-T 94 (106)
T ss_dssp HHHHHHHHHHHTCSSSEEEHHHHHHHHHHTSCC-SCCHHHHHHHHHHHHHHCTTTEEEEEETTEEEEEECTTSCHHHH-H
T ss_pred HHHHHHHHHHHhcccCCccHHHHHHHHHhhhhc-cCCHHHHHHHHHHHHHhCcchheeeeeeccceeeeehhhhHHHH-H
Confidence 4455554433 3446899999999887766443 68999999999999988644 78888888888887788788888 8
Q ss_pred HHHhhhh
Q 017530 359 ERIRFLG 365 (370)
Q Consensus 359 ~r~~~l~ 365 (370)
+|+..+|
T Consensus 95 ~rLe~~a 101 (106)
T 3a4c_A 95 ARLAHHV 101 (106)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888765
No 18
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=43.25 E-value=31 Score=25.75 Aligned_cols=44 Identities=14% Similarity=0.101 Sum_probs=34.1
Q ss_pred HHHHHHhhchhcccCce-eehHHHHHHHHHhhcCCCCCHHHHHHHHHhhhhc
Q 017530 280 RQLADFVKIPLERAGGM-INLIDVYCLFNRARGTALISPDDLSQACSLWEKF 330 (370)
Q Consensus 280 rqlae~l~~~l~k~gGm-itL~dl~~~~NRaRG~eLvSP~Dl~~Ac~~~~~l 330 (370)
|.||+++...+...|=+ .++.|+-..++ ++++++.++.+++..+
T Consensus 31 ~~Ia~~iI~~LD~~GYL~~~l~eia~~l~-------~~~~eve~vL~~lQ~~ 75 (76)
T 2k9l_A 31 QELALELLNYLNEKGFLSKSVEEISDVLR-------CSVEELEKVRQKVLRL 75 (76)
T ss_dssp HHHHHHHHHHCTTSSTTCCCHHHHHHHHT-------SCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCCCCCCCHHHHHHHcC-------CCHHHHHHHHHHHhcC
Confidence 46777777777766543 78888887764 8999999999988765
No 19
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=38.09 E-value=48 Score=25.65 Aligned_cols=42 Identities=10% Similarity=0.086 Sum_probs=31.9
Q ss_pred CceeehHHHHHHHHHhhcCCCCCHHHHHHHHHhhhhcCCCeEEEEeCCc
Q 017530 294 GGMINLIDVYCLFNRARGTALISPDDLSQACSLWEKFDVPVMLRKFDSG 342 (370)
Q Consensus 294 gGmitL~dl~~~~NRaRG~eLvSP~Dl~~Ac~~~~~l~lp~~lr~f~SG 342 (370)
.|.+++.||=..|| |||..+.+-+..|++.|+=.|.+...+|
T Consensus 14 ~g~vsv~eLA~~l~-------VS~~TIRrDL~~Le~~G~l~R~~~~~~~ 55 (87)
T 2k02_A 14 QGRMEAKQLSARLQ-------TPQPLIDAMLERMEAMGKVVRISETSEG 55 (87)
T ss_dssp SCSEEHHHHHHHTT-------CCHHHHHHHHHHHHTTCCSEEEEEECCS
T ss_pred cCCCcHHHHHHHHC-------cCHHHHHHHHHHHHHCCCEEEEecCCCC
Confidence 35666666655553 8999999999999999988888755443
No 20
>3htu_A Vacuolar protein-sorting-associated protein 25; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, cytoplasm, nucleus, polymorphism, protein transport; 2.00A {Homo sapiens}
Probab=37.52 E-value=55 Score=25.04 Aligned_cols=62 Identities=6% Similarity=0.085 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhhchhcccCceeehHHHHHHHHHhhcCCC--CCHHHHHHHHHhhhhcCCCeEEEEe
Q 017530 275 HQQLSRQLADFVKIPLERAGGMINLIDVYCLFNRARGTAL--ISPDDLSQACSLWEKFDVPVMLRKF 339 (370)
Q Consensus 275 ~~eLarqlae~l~~~l~k~gGmitL~dl~~~~NRaRG~eL--vSP~Dl~~Ac~~~~~l~lp~~lr~f 339 (370)
.+|.|..|++|.... -..|.++||-||-+-= ..+|.++ +.++=|++|++.|++-+ ...+...
T Consensus 7 peeWa~~Iy~Wv~~~-G~~~sV~TlyEL~~Gd-~t~~~ef~gmd~~~L~kaL~~L~k~g-kA~i~~~ 70 (79)
T 3htu_A 7 PEEWGKLIYQWVSRS-GQNNSVFTLYELTNGE-DTEDEEFHGLDEATLLRALQALQQEH-KAEIITV 70 (79)
T ss_dssp HHHHHHHHHHHHHTT-CCSCSEECHHHHHHSS-TTTTSTTTTCCHHHHHHHHHHHHHTT-SEEEECC
T ss_pred HHHHHHHHHHHHHHc-CCCCceEEEeeeccCC-CCCCCcccCCCHHHHHHHHHHHHHcC-CEEEEec
Confidence 367888888888641 2345689998887631 2456655 79999999999999876 4454444
No 21
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=36.87 E-value=69 Score=24.52 Aligned_cols=54 Identities=17% Similarity=0.295 Sum_probs=39.8
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhcCCCCCCCCCcccccccHHHHHHHHHhcCCcCc
Q 017530 195 WESTDRSLQEAFQDLNALMNKAK--------EMVMLAEKMRQKLLAGSSSQSNSANDEELGSKEEMQDWLLSVGIVSP 264 (370)
Q Consensus 195 ~~~~~~~l~~af~DL~~LM~~Ak--------emv~la~~~~~ki~~~~~~~~~~~~de~~~~~~~~~s~l~slGi~~p 264 (370)
.......|.+.+++|+.-|+.++ ++-.+.+.+-.||..- .+|+.-|++||.++|
T Consensus 18 ~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL----------------~elRqgLakL~~~~~ 79 (79)
T 3cvf_A 18 LETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFEL----------------SELREGLARLAEAAP 79 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHCCC
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH----------------HHHHHHHHHhcccCC
Confidence 33445668888888888888776 4677777777777542 368888999888876
No 22
>2dg5_A Gamma-glutamyltranspeptidase; gamma-glutamyltransferase, GGT, gamma-GT, glutathione; HET: GLU; 1.60A {Escherichia coli K12} SCOP: d.153.1.6 PDB: 2dbu_A 2dbw_A* 2dbx_A* 2e0x_A 2e0y_A 2z8i_A* 2z8j_A* 2z8k_A*
Probab=32.18 E-value=20 Score=35.04 Aligned_cols=54 Identities=24% Similarity=0.499 Sum_probs=36.8
Q ss_pred hhHH-HHHHHHHHHhhchhcccCceeehHHHHHHHH---------HhhcCCCC---CHH----HHHHHHHhhhhcC
Q 017530 273 LYHQ-QLSRQLADFVKIPLERAGGMINLIDVYCLFN---------RARGTALI---SPD----DLSQACSLWEKFD 331 (370)
Q Consensus 273 ~y~~-eLarqlae~l~~~l~k~gGmitL~dl~~~~N---------RaRG~eLv---SP~----Dl~~Ac~~~~~l~ 331 (370)
.||+ +||++|++.+. +.||+||+.||-. |- ..||.++. .|. -++.++.+|+.++
T Consensus 217 ~FY~G~iA~~iv~~~~----~~GG~lt~~DLa~-y~~~~~~Pl~~~yrg~~v~~~pPpssgG~~~l~~L~iLe~~~ 287 (366)
T 2dg5_A 217 EFYKGTIAEQIAQEMQ----KNGGLITKEDLAA-YKAVERTPISGDYRGYQVYSMPPPSSGGIHIVQILNILENFD 287 (366)
T ss_dssp HHHTSHHHHHHHHHHH----HTTCCCCHHHHHH-CCCEEECCEEEEETTEEEEECCTTBSHHHHHHHHHHHHTTSC
T ss_pred hccCCHHHHHHHHHHH----HcCCCCCHHHHhh-CCCceeCCeEEEeCCeEEEECCCCchHHHHHHHHHHhccccC
Confidence 3554 89999999886 5899999999854 31 11565443 232 4777888888664
No 23
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=31.93 E-value=32 Score=25.12 Aligned_cols=26 Identities=23% Similarity=0.477 Sum_probs=18.9
Q ss_pred hhhhHHHHHHHHHHHhhchhcccCcee
Q 017530 271 GALYHQQLSRQLADFVKIPLERAGGMI 297 (370)
Q Consensus 271 ~~~y~~eLarqlae~l~~~l~k~gGmi 297 (370)
...||+||-|.|++......+ .+|.+
T Consensus 31 st~YYqeLqr~is~L~lqIyk-q~~FL 56 (66)
T 2acm_A 31 STDYYQELQRDISEMFLQIYK-QGGFL 56 (66)
T ss_dssp TSHHHHHHHHHHHHHHHHHCT-TTTEE
T ss_pred chHHHHHHHHHHHHHHHHHHc-cCCee
Confidence 478999999999998865433 33444
No 24
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=30.72 E-value=56 Score=27.04 Aligned_cols=46 Identities=13% Similarity=0.103 Sum_probs=36.8
Q ss_pred HHHHHHhhchhcccCce-eehHHHHHHHHHhhcCCCCCHHHHHHHHHhhhhcCC
Q 017530 280 RQLADFVKIPLERAGGM-INLIDVYCLFNRARGTALISPDDLSQACSLWEKFDV 332 (370)
Q Consensus 280 rqlae~l~~~l~k~gGm-itL~dl~~~~NRaRG~eLvSP~Dl~~Ac~~~~~l~l 332 (370)
+.||+++...+...|=+ .++.|+-..++ |+++++.++.+.+..+..
T Consensus 22 ~~ia~~iI~~LD~~GYL~~~l~eia~~l~-------~~~~eve~vL~~iQ~~dP 68 (130)
T 2k9m_A 22 QELALELLNYLNEKGFLSKSVEEISDVLR-------CSVEELEKVRQKVLRLEP 68 (130)
T ss_dssp HHHHHHHTTSBCTTSSBSSCHHHHHHHTT-------CCHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHhcCCCCCCCCCHHHHHHHcC-------CCHHHHHHHHHHHhcCCC
Confidence 67888888777777644 77888887663 899999999999998863
No 25
>4e40_A Putative uncharacterized protein; haptoglobin-hemoglobin receptor, helical bundle, receptor, C surface, transport protein; 1.60A {Trypanosoma congolense}
Probab=29.73 E-value=28 Score=31.56 Aligned_cols=48 Identities=17% Similarity=0.218 Sum_probs=34.0
Q ss_pred HHHHHHHHhhchhc-----ccCceeehHHHHHHHHHhhcCCCCCHHHHHHHHHhhh
Q 017530 278 LSRQLADFVKIPLE-----RAGGMINLIDVYCLFNRARGTALISPDDLSQACSLWE 328 (370)
Q Consensus 278 Larqlae~l~~~l~-----k~gGmitL~dl~~~~NRaRG~eLvSP~Dl~~Ac~~~~ 328 (370)
++++|++.--+.+. |..|=-++.+||.+.||+||.+ ..++..|.+.-+
T Consensus 111 ~~~ei~~h~A~Al~ha~~AK~~GDAaa~~v~~lLkrar~~n---~~evKeAae~Cs 163 (252)
T 4e40_A 111 KVNEIIELTAGATEHAKGAKANGDASAVKVSNLLARAKESE---NQYVKEAAEECS 163 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS---SHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhhhhhhhhccchHHHHHHHHHHHhhhcc---hHHHHHHHHHhh
Confidence 45566555543332 5667788999999999999997 667777765543
No 26
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=28.81 E-value=1.6e+02 Score=22.08 Aligned_cols=52 Identities=17% Similarity=0.272 Sum_probs=36.4
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhcCCCCCCCCCcccccccHHHHHHHHHhcCCc
Q 017530 195 WESTDRSLQEAFQDLNALMNKAK--------EMVMLAEKMRQKLLAGSSSQSNSANDEELGSKEEMQDWLLSVGIV 262 (370)
Q Consensus 195 ~~~~~~~l~~af~DL~~LM~~Ak--------emv~la~~~~~ki~~~~~~~~~~~~de~~~~~~~~~s~l~slGi~ 262 (370)
.......|.+.+++|+.-|+.++ ++-.+.+.+-.||..- .+|+.-|++|+..
T Consensus 12 ~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL----------------~elrq~LakL~~~ 71 (72)
T 3cve_A 12 VEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFEL----------------TELRDNLAKLLEC 71 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHTC-
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH----------------HHHHHHHHHhccC
Confidence 33445668888999998888877 4666777777777542 3678888887754
No 27
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=27.52 E-value=2.3e+02 Score=25.79 Aligned_cols=74 Identities=8% Similarity=-0.007 Sum_probs=45.9
Q ss_pred ceeehHHHHHHHHHhh---cCCCCCHHHHHHHHHhhhhcCCCeEEEEe--CCceEEEEcCCCChhHHHHHHHhh----hh
Q 017530 295 GMINLIDVYCLFNRAR---GTALISPDDLSQACSLWEKFDVPVMLRKF--DSGVMAIQSKSHSDEESMMERIRF----LG 365 (370)
Q Consensus 295 GmitL~dl~~~~NRaR---G~eLvSP~Dl~~Ac~~~~~l~lp~~lr~f--~SG~~Vvq~~~~sde~~~~~r~~~----l~ 365 (370)
.-++..|+|..|+... |..-++...+..+++.|+.+++.-.-..- ..|.+-...-..+.+.+ ..-+.. +.
T Consensus 304 ~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~y~~~~l~~~~~~v-~~~l~~~~~~~~ 382 (386)
T 2qby_A 304 VVSTTGAVYETYLNICKKLGVEAVTQRRVSDIINELDMVGILTAKVVNRGRYGKTKEIGLAVDKNII-VRSLIESDSRFA 382 (386)
T ss_dssp -CEEHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHTSEEEEECCCTTSCCCEEEEESSCSHHH-HHHHHHHC----
T ss_pred CceeHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCEEEEeecCCCCCCeEEEEeCCCHHHH-HHHHhcCChhhh
Confidence 3478899999888763 66667779999999999998877543221 24655444445667776 555544 56
Q ss_pred cccc
Q 017530 366 VIFS 369 (370)
Q Consensus 366 ~~~~ 369 (370)
.+||
T Consensus 383 ~~~~ 386 (386)
T 2qby_A 383 DLWS 386 (386)
T ss_dssp ----
T ss_pred hhcC
Confidence 6654
No 28
>3cuq_C Vacuolar protein-sorting-associated protein 25; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_C
Probab=25.64 E-value=91 Score=27.30 Aligned_cols=79 Identities=9% Similarity=0.091 Sum_probs=52.7
Q ss_pred HHHHHHHhcCCcCccccCcch-hhh---HHHHHHHHHHHhhchhcccCceeehHHHHHHHHHhhcCCC--CCHHHHHHHH
Q 017530 251 EMQDWLLSVGIVSPVTKESAG-ALY---HQQLSRQLADFVKIPLERAGGMINLIDVYCLFNRARGTAL--ISPDDLSQAC 324 (370)
Q Consensus 251 ~~~s~l~slGi~~pvt~~~~~-~~y---~~eLarqlae~l~~~l~k~gGmitL~dl~~~~NRaRG~eL--vSP~Dl~~Ac 324 (370)
.+-+.|..-|-...+.++... ..| -+|-|..|++|+...= ..|.++|+.|+.+-=. .+|.++ +.++=|++|+
T Consensus 76 ~il~~L~~~g~aew~d~~~~~~~I~Wrt~~eWa~~iy~wv~~~G-~~~sV~TlyEL~~Gd~-t~~~ef~gld~~vL~kaL 153 (176)
T 3cuq_C 76 IVLEELRKKGNLEWLDKSKSSFLIMWRRPEEWGKLIYQWVSRSG-QNNSVFTLYELTNGED-TEDEEFHGLDEATLLRAL 153 (176)
T ss_dssp HHHHHHHHHTSEEECSSSSSEEEECSSCHHHHHHHHHHHHHTTT-CCSCEEEHHHHHHCTT-TTTSTTTTCCHHHHHHHH
T ss_pred HHHHHHHhcCCceeecCCCCEEEEEeCCHHHHHHHHHHHHHhcC-CcCcEEEEeeeccCCC-CCCCcccCCCHHHHHHHH
Confidence 344455555766555544321 122 4799999999997532 2367999999875432 355555 7888899999
Q ss_pred HhhhhcC
Q 017530 325 SLWEKFD 331 (370)
Q Consensus 325 ~~~~~l~ 331 (370)
+.|++-|
T Consensus 154 ~~L~~~g 160 (176)
T 3cuq_C 154 QALQQEH 160 (176)
T ss_dssp HHHHHHT
T ss_pred HHHHHcC
Confidence 9999876
No 29
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=25.27 E-value=59 Score=28.06 Aligned_cols=36 Identities=17% Similarity=0.252 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHHhhhhcCCCeEEEEe---CCceEEEEcC
Q 017530 314 LISPDDLSQACSLWEKFDVPVMLRKF---DSGVMAIQSK 349 (370)
Q Consensus 314 LvSP~Dl~~Ac~~~~~l~lp~~lr~f---~SG~~Vvq~~ 349 (370)
|+||++|.++++.--....|||++-- ++|.+.++..
T Consensus 2 ~~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv 40 (157)
T 3mfb_A 2 LLTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGY 40 (157)
T ss_dssp CCCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEE
T ss_pred ccCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEE
Confidence 89999999999999999999999877 2888877754
No 30
>1xb4_A VPS25, hypothetical 23.6 kDa protein in YUH1-URA8 intergenic region; winged helix, unknown function; 3.10A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_B 1u5t_C
Probab=24.61 E-value=1.2e+02 Score=27.10 Aligned_cols=68 Identities=6% Similarity=-0.058 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhhchhcccCceeehHHHHHHHHHhhcCCC--CCHHHHHHHHHhhhhcCCCeEEEEeC--CceEE
Q 017530 275 HQQLSRQLADFVKIPLERAGGMINLIDVYCLFNRARGTAL--ISPDDLSQACSLWEKFDVPVMLRKFD--SGVMA 345 (370)
Q Consensus 275 ~~eLarqlae~l~~~l~k~gGmitL~dl~~~~NRaRG~eL--vSP~Dl~~Ac~~~~~l~lp~~lr~f~--SG~~V 345 (370)
.+|.|..|++|+...= ..|.+|||.||.+-=. .+|.++ +.++=|.+|++.|++-| -..+...+ -||+.
T Consensus 128 p~EWa~~I~~Wv~~tG-~~~sV~TlyEL~~Gd~-t~~~ef~gmd~~vL~kaL~~L~k~G-Kaqi~~~~~~~GVKF 199 (202)
T 1xb4_A 128 LDSWASLILQWFEDSG-KLNQVITLYELSEGDE-TVNWEFHRMPESLLYYCLKPLCDRN-RATMLKDENDKVIAI 199 (202)
T ss_dssp HHHHHHHHHHHHHTTS-CTTSCEEHHHHC--CC-SCCSTTTTCCHHHHHHHHHHHHGGG-CCEEEECTTSCEEEE
T ss_pred HHHHHHHHHHHHHhcC-CcCcEEEeehcccCCC-CCCccccCCCHHHHHHHHHHHHHcC-CEEEeecCCCCeEEE
Confidence 5899999999996422 2367999999875321 144454 78889999999999876 34444443 45543
No 31
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=24.31 E-value=2.5e+02 Score=21.77 Aligned_cols=66 Identities=18% Similarity=0.199 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHHHhhchhcccCcee-ehHHHHHHHHHhhcCCCCCHHHHHHHHHhhhhcCCCeEEEEeCCceEEEE
Q 017530 273 LYHQQLSRQLADFVKIPLERAGGMI-NLIDVYCLFNRARGTALISPDDLSQACSLWEKFDVPVMLRKFDSGVMAIQ 347 (370)
Q Consensus 273 ~y~~eLarqlae~l~~~l~k~gGmi-tL~dl~~~~NRaRG~eLvSP~Dl~~Ac~~~~~l~lp~~lr~f~SG~~Vvq 347 (370)
..|++++.+|.+.+...--+.|.-+ +..+|=..|| ||+..+.+|+..|+..|+ +. +.=++|..|..
T Consensus 9 ~~~~~i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~-------vSr~tvr~al~~L~~~Gl-i~-~~~~~G~~V~~ 75 (113)
T 3tqn_A 9 PIYQQLRDKIVEAIIDGSYVEGEMIPSIRKISTEYQ-------INPLTVSKAYQSLLDDNV-IE-KRRGLGMLVKA 75 (113)
T ss_dssp CHHHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHT-------CCHHHHHHHHHHHHHTTS-EE-EETTTEEEECT
T ss_pred CHHHHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHC-------cCHHHHHHHHHHHHHCCC-EE-EecCCeEEEeC
Confidence 3466777777777764444456666 6666666663 699999999999999887 32 23357876653
No 32
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=23.17 E-value=2.1e+02 Score=20.61 Aligned_cols=39 Identities=21% Similarity=0.340 Sum_probs=20.5
Q ss_pred chhhhhccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017530 183 GVGGLLRKEQEMWESTDRSLQEAFQDLNALMNKAKEMVMLAEKMRQ 228 (370)
Q Consensus 183 GI~gi~r~~~~~~~~~~~~l~~af~DL~~LM~~Akemv~la~~~~~ 228 (370)
++.+|++.--++.-+.+. -|+.|-.++.+|..=|+.|+.
T Consensus 15 ev~~iM~~ni~kvlERGe-------kL~~L~dkT~~L~~~A~~F~~ 53 (63)
T 1urq_A 15 GVVGELARARLALDERGQ-------KLSDLEERTAAMMSSADSFSK 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 444555444444433333 355566666666666666643
No 33
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=23.17 E-value=2.2e+02 Score=22.00 Aligned_cols=55 Identities=18% Similarity=0.335 Sum_probs=41.9
Q ss_pred hhhHHHHHHHHHHHhhc----h-----hcccCceeehHHHHHHHHHhhcCCCCCHHHHHHHHHhhhhc-CCCeEEEEeCC
Q 017530 272 ALYHQQLSRQLADFVKI----P-----LERAGGMINLIDVYCLFNRARGTALISPDDLSQACSLWEKF-DVPVMLRKFDS 341 (370)
Q Consensus 272 ~~y~~eLarqlae~l~~----~-----l~k~gGmitL~dl~~~~NRaRG~eLvSP~Dl~~Ac~~~~~l-~lp~~lr~f~S 341 (370)
..=+++|-.+|.+.|.- + ....|..+| +-|-+||-.|.++++.- +..+.+..|++
T Consensus 25 ~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~it---------------isSd~EL~eAl~l~~~n~~~~l~ihvf~~ 89 (89)
T 1vd2_A 25 SISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCT---------------VSSQLELEEAFRLYELNKDSELLIHVFPC 89 (89)
T ss_dssp TCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCCEE---------------CCSHHHHHHHHHHHHHTSCCCEEEEEEEC
T ss_pred CCCHHHHHHHHHHHhCCCCCCeEEEEEECCCCCccc---------------ccCHHHHHHHHHHHHccCCCCEEEEEccC
Confidence 34578999999999962 1 224577776 56999999999999965 56688888874
No 34
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=23.10 E-value=3e+02 Score=22.26 Aligned_cols=53 Identities=4% Similarity=0.029 Sum_probs=38.4
Q ss_pred ccCceeehHHHHHHHHHhhcCCCCCHHHHHHHHHhhhhcCCCeEEEEeCCceEEEE
Q 017530 292 RAGGMINLIDVYCLFNRARGTALISPDDLSQACSLWEKFDVPVMLRKFDSGVMAIQ 347 (370)
Q Consensus 292 k~gGmitL~dl~~~~NRaRG~eLvSP~Dl~~Ac~~~~~l~lp~~lr~f~SG~~Vvq 347 (370)
...+=+|..|+|....+ ++- =||+..+.+.++.|...|+= +-..++.|...-.
T Consensus 25 ~~~~h~sa~eI~~~l~~-~~~-~is~aTVYR~L~~L~e~Glv-~~~~~~~g~~~Y~ 77 (139)
T 3mwm_A 25 EVEEFRSAQELHDMLKH-KGD-AVGLTTVYRTLQSLADAGEV-DVLRTAEGESVYR 77 (139)
T ss_dssp TCSSCEEHHHHHHHHHH-TTC-CCCHHHHHHHHHHHHHTTSS-EEEECTTSCEEEE
T ss_pred hCCCCCCHHHHHHHHHH-hCC-CCCHHHHHHHHHHHHHCCCE-EEEEcCCCceEEE
Confidence 34568999999988854 333 48999999999999999974 3344555554443
No 35
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=22.81 E-value=97 Score=25.70 Aligned_cols=29 Identities=28% Similarity=0.272 Sum_probs=24.3
Q ss_pred CCcccEEEEEEecCCChhhHHHHHHHHHhh
Q 017530 120 GLRSVVITVVVRGKGDWELFLSKMWECWRG 149 (370)
Q Consensus 120 ~s~~~~ikLSFr~~G~~~~F~~~L~~aL~~ 149 (370)
+|++...-+.|+ +.+-+.|-.+|++.+.+
T Consensus 79 gsgsgvm~i~f~-gddlea~ekalkemirq 107 (170)
T 4hhu_A 79 GSGSGVMVIVFE-GDDLEALEKALKEMIRQ 107 (170)
T ss_dssp CTTCCEEEEEEE-CSCHHHHHHHHHHHHHH
T ss_pred eCCceEEEEEEe-cCcHHHHHHHHHHHHHH
Confidence 567889999999 67778899999998764
No 36
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=22.55 E-value=1.3e+02 Score=24.92 Aligned_cols=84 Identities=31% Similarity=0.382 Sum_probs=50.4
Q ss_pred EEEEEEecCCChhhHHHHHHHHHhhc-ccccccCCCCCCCCCccccccccCCCC---cccccchhhhhccHHHHHHhhhH
Q 017530 125 VITVVVRGKGDWELFLSKMWECWRGR-AWAWETTPSETGPASASASASLYASDG---SVRMVGVGGLLRKEQEMWESTDR 200 (370)
Q Consensus 125 ~ikLSFr~~G~~~~F~~~L~~aL~~k-~W~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~GI~gi~r~~~~~~~~~~~ 200 (370)
..-+.|+ +.+-+.|-.+|++.+.+- ++. +.. .+..++ ..+-.|+---.|++..+.. .
T Consensus 3 vm~i~f~-gddlea~ekalkemirqarkfa------gtv---------tytl~gn~l~i~itgvpeqvrkelakea---e 63 (170)
T 4hhu_A 3 VMVIVFE-GDDLEALEKALKEMIRQARKFA------GTV---------TYTLSGNRLVIVITGVPEQVRKELAKEA---E 63 (170)
T ss_dssp EEEEEEE-CSCHHHHHHHHHHHHHHHHHTT------CEE---------EEEEETTEEEEEEESCCHHHHHHHHHHH---H
T ss_pred eEEEEEe-cCcHHHHHHHHHHHHHHHHhhc------ceE---------EEEEeCCEEEEEEeCCcHHHHHHHHHHH---H
Confidence 5678899 677788999999987643 332 100 011111 1233455544455544332 2
Q ss_pred HHHHHH----------------------HHHHHHHHHHHHHHHHHHHHH
Q 017530 201 SLQEAF----------------------QDLNALMNKAKEMVMLAEKMR 227 (370)
Q Consensus 201 ~l~~af----------------------~DL~~LM~~Akemv~la~~~~ 227 (370)
-|...| .||+++-.--|+|+.-|++|+
T Consensus 64 rl~~efni~v~y~imgsgsgvm~i~f~gddlea~ekalkemirqarkfa 112 (170)
T 4hhu_A 64 RLKAEFNINVQYQIMGSGSGVMVIVFEGDDLEALEKALKEMIRQARKFA 112 (170)
T ss_dssp HHHHHHTCEEEEEEECTTCCEEEEEEECSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcceEEEEEEEeCCceEEEEEEecCcHHHHHHHHHHHHHHHHhhc
Confidence 233344 599999888899999998884
No 37
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=22.14 E-value=2.6e+02 Score=21.97 Aligned_cols=71 Identities=10% Similarity=0.073 Sum_probs=49.3
Q ss_pred HHHHHHhcCCcCccccCcc-hhhhHHHHHHHHHHHhhchhcccCceeehHHHHHHHHHhhcCCCCCHHHHHHHHHhhhhc
Q 017530 252 MQDWLLSVGIVSPVTKESA-GALYHQQLSRQLADFVKIPLERAGGMINLIDVYCLFNRARGTALISPDDLSQACSLWEKF 330 (370)
Q Consensus 252 ~~s~l~slGi~~pvt~~~~-~~~y~~eLarqlae~l~~~l~k~gGmitL~dl~~~~NRaRG~eLvSP~Dl~~Ac~~~~~l 330 (370)
+-..+...|...|+..+.+ ....+++++..|.+++.. .|-||+.|+-.+++ +|-.=...-++.|++.
T Consensus 40 ~l~~l~~~G~l~~i~~~~~~~~~~~~~~~~~l~~~~~~-----~~~it~ae~Rd~lg-------~sRK~ai~lLE~~Dr~ 107 (121)
T 2pjp_A 40 TLRQAAQQGIITAIVKDRYYRNDRIVEFANMIRDLDQE-----CGSTCAADFRDRLG-------VGRKLAIQILEYFDRI 107 (121)
T ss_dssp HHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHH-----HSSEEHHHHHHHHT-------SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCEEEecCCceECHHHHHHHHHHHHHHHHH-----CCCccHHHHHHHHC-------CcHHHHHHHHHHHhhc
Confidence 4456677887778877643 566777777777777653 37899999999984 5666566666677766
Q ss_pred CCCe
Q 017530 331 DVPV 334 (370)
Q Consensus 331 ~lp~ 334 (370)
++..
T Consensus 108 g~Tr 111 (121)
T 2pjp_A 108 GFTR 111 (121)
T ss_dssp TSEE
T ss_pred CCeE
Confidence 5543
No 38
>3icj_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structur initiative; HET: KCX; 1.95A {Pyrococcus furiosus} PDB: 3etk_A* 3igh_X*
Probab=21.86 E-value=95 Score=31.37 Aligned_cols=58 Identities=16% Similarity=0.233 Sum_probs=44.4
Q ss_pred hcCCCCCHHHHHHHHHhhhhcCCCeEEEEeCCc---------------eEEEEcCCCChhHHHHHHHhhhhcccc
Q 017530 310 RGTALISPDDLSQACSLWEKFDVPVMLRKFDSG---------------VMAIQSKSHSDEESMMERIRFLGVIFS 369 (370)
Q Consensus 310 RG~eLvSP~Dl~~Ac~~~~~l~lp~~lr~f~SG---------------~~Vvq~~~~sde~~~~~r~~~l~~~~~ 369 (370)
+|...+||++|..+++...+.|+++.+...... ..+.|.. +-+++. .+|+++++++.+
T Consensus 321 ~g~~~~~~e~l~~~v~~A~~~G~~v~~Ha~gd~ai~~~l~a~~~~~~r~~ieH~~-~~~~e~-i~~la~~gv~~~ 393 (534)
T 3icj_A 321 SGELVMNKDEIVEVIERAKPLGLDVAVHAIGDKAVDVALDAFEEAEFSGRIEHAS-LVRDDQ-LERIKELKVRIS 393 (534)
T ss_dssp CCCCSSCHHHHHHHHHHHTTTTCEEEEEECSHHHHHHHHHHHHHHTCCCEEEECC-BCCHHH-HHHHHHHTCEEE
T ss_pred CCcccCCHHHHHHHHHHHHHCCCEEEEEEcChHHHHHHHHHHHhccCCCEEEECC-CCCHHH-HHHHHHcCCeEE
Confidence 677788999999999999999999888775322 4556554 455556 699999998765
No 39
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=20.04 E-value=3.3e+02 Score=21.60 Aligned_cols=65 Identities=15% Similarity=0.129 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHHhhchhcccCcee-ehHHHHHHHHHhhcCCCCCHHHHHHHHHhhhhcCCCeEEEEeCCceEEEE
Q 017530 274 YHQQLSRQLADFVKIPLERAGGMI-NLIDVYCLFNRARGTALISPDDLSQACSLWEKFDVPVMLRKFDSGVMAIQ 347 (370)
Q Consensus 274 y~~eLarqlae~l~~~l~k~gGmi-tL~dl~~~~NRaRG~eLvSP~Dl~~Ac~~~~~l~lp~~lr~f~SG~~Vvq 347 (370)
-|++++.+|.+.+....-+.|.-+ +..+|=..|+ ||+..+.+|+..|+..|+ .-+.=++|..|..
T Consensus 12 ~~~~i~~~l~~~I~~g~~~~G~~lPse~~La~~~~-------vSr~tvr~Al~~L~~~Gl--i~~~~g~G~~V~~ 77 (126)
T 3by6_A 12 VYLQLVDRIKNEVATDVLSANDQLPSVRETALQEK-------INPNTVAKAYKELEAQKV--IRTIPGKGTFITG 77 (126)
T ss_dssp HHHHHHHHHHHHHHTTSSCTTCEECCHHHHHHHHT-------CCHHHHHHHHHHHHHTTS--EEEETTTEEEECS
T ss_pred HHHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHC-------cCHHHHHHHHHHHHHCCC--EEEecCCeEEEcc
Confidence 456677777776654434566777 7888877764 699999999999999886 2233367887754
Done!