Query 017531
Match_columns 370
No_of_seqs 192 out of 379
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 15:56:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017531.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017531hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jlp_A PSI-conotoxin PIIIF; mu 32.3 13 0.00045 23.1 0.7 9 313-321 14-22 (26)
2 4hwm_A Uncharacterized protein 22.3 37 0.0013 28.9 1.8 22 123-144 34-56 (130)
3 2l76_A Nfatc2-interacting prot 20.4 24 0.00084 28.7 0.3 15 132-146 79-93 (95)
4 1as5_A Conotoxin Y-PIIIE; neur 8.3 1.1E+02 0.0037 19.1 0.6 8 313-320 14-21 (26)
5 2o62_A Hypothetical protein; s 7.0 2.9E+02 0.0098 25.9 3.2 26 279-308 231-256 (270)
6 3esm_A Uncharacterized protein 6.7 2.7E+02 0.0092 24.2 2.7 26 129-154 103-131 (152)
7 2fyq_A Chymotrypsin-like cyste 6.6 1.6E+02 0.0054 26.3 1.1 16 189-204 88-106 (194)
8 2dnf_A Doublecortin domain-con 6.5 3.4E+02 0.012 21.8 3.1 17 128-144 59-75 (108)
9 1oz9_A Hypothetical protein AQ 6.3 3.1E+02 0.011 23.4 2.9 37 114-150 53-98 (150)
10 4ash_A NS6 protease; hydrolase 6.3 1.7E+02 0.0057 26.1 1.1 16 189-204 77-95 (185)
No 1
>1jlp_A PSI-conotoxin PIIIF; multiple disulfide bonds, amidated C-terminus; HET: HYP; NMR {Synthetic} SCOP: j.30.1.4
Probab=32.29 E-value=13 Score=23.10 Aligned_cols=9 Identities=67% Similarity=1.634 Sum_probs=7.5
Q ss_pred cccccCCCC
Q 017531 313 TGCYNLLCS 321 (370)
Q Consensus 313 TGCYNl~Cp 321 (370)
.||||.+|=
T Consensus 14 pgcynalcc 22 (26)
T 1jlp_A 14 PGCYNALCC 22 (26)
T ss_dssp TTTTTSSTT
T ss_pred Cchhhhhhe
Confidence 499999983
No 2
>4hwm_A Uncharacterized protein YEDD; YEDD-like protein, PF13987 family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 1.38A {Klebsiella pneumoniae subsp}
Probab=22.26 E-value=37 Score=28.86 Aligned_cols=22 Identities=27% Similarity=0.622 Sum_probs=17.2
Q ss_pred hhcCCcceE-EeCCCCCeEEeee
Q 017531 123 KINKPAVKT-IQSPDGDIIDCVE 144 (370)
Q Consensus 123 ~iNKp~vKt-Iqs~dGdiiDCVd 144 (370)
.+...|+.| |.|.+||.+||--
T Consensus 34 lvSpeAiASLivt~eGdTLDCRQ 56 (130)
T 4hwm_A 34 MMSPDAIASLIVTKEGDTFDCRQ 56 (130)
T ss_dssp SSSTTCEEEEEECTTSEEEEEEE
T ss_pred ccChhheeeEEEcCCCCccchhh
Confidence 356667766 7899999999964
No 3
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=20.37 E-value=24 Score=28.69 Aligned_cols=15 Identities=40% Similarity=0.600 Sum_probs=12.2
Q ss_pred EeCCCCCeEEeeecC
Q 017531 132 IQSPDGDIIDCVETH 146 (370)
Q Consensus 132 Iqs~dGdiiDCVdI~ 146 (370)
+..+|||+|||+-+.
T Consensus 79 L~meD~DiID~~~~~ 93 (95)
T 2l76_A 79 LKLGVADIIDCVVLT 93 (95)
T ss_dssp HTCCSSCEEEEEECC
T ss_pred cCCCCCCEEEEEEec
Confidence 458999999998753
No 4
>1as5_A Conotoxin Y-PIIIE; neurotoxin, acetylcholine; HET: HYP; NMR {Conus purpurascens} SCOP: j.30.1.4 PDB: 1jlo_A*
Probab=8.34 E-value=1.1e+02 Score=19.14 Aligned_cols=8 Identities=38% Similarity=1.057 Sum_probs=6.9
Q ss_pred cccccCCC
Q 017531 313 TGCYNLLC 320 (370)
Q Consensus 313 TGCYNl~C 320 (370)
-||||..|
T Consensus 14 pgc~~a~c 21 (26)
T 1as5_A 14 PGCSSASC 21 (26)
T ss_dssp TTCTTCCC
T ss_pred CCcchhhh
Confidence 49999988
No 5
>2o62_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.75A {Nostoc punctiforme} SCOP: b.60.1.9 b.60.1.9
Probab=6.98 E-value=2.9e+02 Score=25.94 Aligned_cols=26 Identities=23% Similarity=0.515 Sum_probs=17.8
Q ss_pred CCcEEEEeeEECccccCCCccEEEEEEecC
Q 017531 279 DLNTIEAGWQVSPELYGDNYPRFFTYWTTD 308 (370)
Q Consensus 279 ~~nsIeaGW~V~P~lYGD~~~RlFtyWT~D 308 (370)
+--.|||||.+.|.. +-|+-....++
T Consensus 231 ~~F~lev~Wl~~~~~----~qrlir~Y~~~ 256 (270)
T 2o62_A 231 QPLFLEAGWLIQSDL----RQRMIRSYNDK 256 (270)
T ss_dssp SCEEEEEEEEEETTE----EEEEEEEECTT
T ss_pred CcEEEEEEEEeCCCe----eEEEEEEeCCC
Confidence 345799999999975 34555555444
No 6
>3esm_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; 1.65A {Nocardia farcinica}
Probab=6.70 E-value=2.7e+02 Score=24.22 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=16.9
Q ss_pred ceEEeC-CCCCeEEeeecCC--CCCCCCC
Q 017531 129 VKTIQS-PDGDIIDCVETHL--QPAFDHP 154 (370)
Q Consensus 129 vKtIqs-~dGdiiDCVdI~k--QPAfdHP 154 (370)
.+.+|+ +||.+.+++++-. |...+||
T Consensus 103 fpa~Qty~dG~vv~W~e~p~~g~~~~e~P 131 (152)
T 3esm_A 103 FPAEQTYSDGRVVAWNQPPAAXXSEPEHP 131 (152)
T ss_dssp CCEEEEETTSCEEEECBCCCC--CCCSSB
T ss_pred EEeEEEecCCeEeEcccCCccccCCCCCC
Confidence 345555 7999999999853 5444443
No 7
>2fyq_A Chymotrypsin-like cysteine proteinase; protease, norovirus, calicivirus, viral protein; 1.50A {Norwalk virus} PDB: 2fyr_A 2iph_A* 1wqs_A*
Probab=6.57 E-value=1.6e+02 Score=26.35 Aligned_cols=16 Identities=50% Similarity=1.032 Sum_probs=11.2
Q ss_pred CCCCCCcee---eeecCch
Q 017531 189 ESCPEGTIP---IRRTTEQ 204 (370)
Q Consensus 189 ~~CP~GTVP---IrRtt~e 204 (370)
++||||||- |.|.+-|
T Consensus 88 eg~peGtV~silikR~sge 106 (194)
T 2fyq_A 88 EGCPEGTVCSVLIKRDSGE 106 (194)
T ss_dssp SSCCTTCEEEEEEECTTSC
T ss_pred cCCCCCcEEEEEEecCCCC
Confidence 479999874 5666544
No 8
>2dnf_A Doublecortin domain-containing protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Probab=6.48 E-value=3.4e+02 Score=21.84 Aligned_cols=17 Identities=18% Similarity=0.427 Sum_probs=14.5
Q ss_pred cceEEeCCCCCeEEeee
Q 017531 128 AVKTIQSPDGDIIDCVE 144 (370)
Q Consensus 128 ~vKtIqs~dGdiiDCVd 144 (370)
+|+.|-|.||..|+|++
T Consensus 59 aVr~Lyt~~G~~V~~l~ 75 (108)
T 2dnf_A 59 AVHRLYTLEGKLVESGA 75 (108)
T ss_dssp SCCEEEETTCCEESSTT
T ss_pred CEEEEEcCCCCEeCCHH
Confidence 69999999998887764
No 9
>1oz9_A Hypothetical protein AQ_1354; matrix metalloproteinase type fold, structural genomics, BSG structure funded by NIH; 1.89A {Aquifex aeolicus} SCOP: d.92.1.15
Probab=6.33 E-value=3.1e+02 Score=23.39 Aligned_cols=37 Identities=22% Similarity=0.361 Sum_probs=28.7
Q ss_pred HHHHHHHHHhhcCCc-ceEEeCCC--------CCeEEeeecCCCCC
Q 017531 114 LKFIRAHLNKINKPA-VKTIQSPD--------GDIIDCVETHLQPA 150 (370)
Q Consensus 114 ~~~i~~~Lk~iNKp~-vKtIqs~d--------GdiiDCVdI~kQPA 150 (370)
.+++.++-+..++|. |-|+-..+ |||+=|++.-..-|
T Consensus 53 i~~LN~~yR~~d~pTDVLSFp~~e~~~~~~~LGDIvIs~~~v~~qA 98 (150)
T 1oz9_A 53 IRELNKTYRKKDKPTDVLSFPMGEEFGGYKILGDVVISQDTAERQA 98 (150)
T ss_dssp HHHHHHHHHSCCSCCSEEEEECCCEETTEEEEEEEEEEHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcEEeecCCCCCCCCcCceeEEEcHHHHHHHH
Confidence 446777999999998 89998765 89999988655444
No 10
>4ash_A NS6 protease; hydrolase, trypsin-like, calicivirus; 1.58A {Murine norovirus 1}
Probab=6.31 E-value=1.7e+02 Score=26.09 Aligned_cols=16 Identities=25% Similarity=0.827 Sum_probs=11.5
Q ss_pred CCCCCCcee---eeecCch
Q 017531 189 ESCPEGTIP---IRRTTEQ 204 (370)
Q Consensus 189 ~~CP~GTVP---IrRtt~e 204 (370)
++||||||- |.|.+-|
T Consensus 77 eg~peGtV~svlikR~sge 95 (185)
T 4ash_A 77 NGCQEGVVASVLVKRASGE 95 (185)
T ss_dssp SSCCTTCEEEEEEECTTCC
T ss_pred cCCCCCcEEEEEEecCCCC
Confidence 479999974 6666644
Done!