Query 017531
Match_columns 370
No_of_seqs 192 out of 379
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 15:56:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017531.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017531hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2bi6h1 g.3.12.1 (H:8-31) Brom 9.9 38 0.0028 19.6 0.5 10 319-328 6-15 (26)
2 d2o5aa1 d.218.1.12 (A:2-114) U 9.4 1.8E+02 0.013 21.8 4.7 30 116-145 53-84 (113)
3 d2q07a1 b.122.1.1 (A:460-527) 8.9 52 0.0038 23.0 1.0 27 308-336 6-32 (68)
4 d1o8ba2 d.58.40.1 (A:127-198) 8.0 88 0.0064 21.9 2.1 29 115-143 15-46 (72)
5 d2o62a1 b.60.1.9 (A:133-269) U 7.7 1.1E+02 0.0078 23.9 2.7 24 282-309 101-124 (137)
6 d1nbca_ b.2.2.2 (A:) Cellusoma 7.7 2.6E+02 0.019 22.0 5.3 46 314-360 70-120 (155)
7 d1qnta2 c.55.7.1 (A:6-91) O6-a 7.6 27 0.002 26.1 -1.1 9 149-157 77-85 (86)
8 d1muja1 b.1.1.2 (A:84-183) Cla 7.5 74 0.0054 23.2 1.5 25 131-157 69-93 (100)
9 d1i8ya_ g.3.16.1 (A:) N-termin 7.4 58 0.0042 19.2 0.6 7 190-196 7-13 (28)
10 d1vg0a2 d.16.1.6 (A:445-557) R 7.1 93 0.0068 23.5 1.9 20 182-202 44-63 (113)
No 1
>d2bi6h1 g.3.12.1 (H:8-31) Bromelain inhibitor VI (cysteine protease inhibitor) {Pineapple (Ananas comosus) [TaxId: 4615]}
Probab=9.90 E-value=38 Score=19.56 Aligned_cols=10 Identities=40% Similarity=0.816 Sum_probs=7.7
Q ss_pred CCCccEEecC
Q 017531 319 LCSGFVQTNN 328 (370)
Q Consensus 319 ~CpGFVQvs~ 328 (370)
+||||-.+-+
T Consensus 6 dcpgfcktck 15 (26)
T d2bi6h1 6 DCPGFCKTCK 15 (26)
T ss_dssp SCCTTCSSBC
T ss_pred cCchHHHHHH
Confidence 6999987743
No 2
>d2o5aa1 d.218.1.12 (A:2-114) Uncharacterized protein BH1328 {Bacillus halodurans [TaxId: 86665]}
Probab=9.37 E-value=1.8e+02 Score=21.76 Aligned_cols=30 Identities=7% Similarity=-0.007 Sum_probs=22.1
Q ss_pred HHHHHHHhhcCCcceEEeCCCCC--eEEeeec
Q 017531 116 FIRAHLNKINKPAVKTIQSPDGD--IIDCVET 145 (370)
Q Consensus 116 ~i~~~Lk~iNKp~vKtIqs~dGd--iiDCVdI 145 (370)
.|++.||..+.++.+.-..++++ ++||.|+
T Consensus 53 ~v~~~~k~~~~~~~~~eG~~~~~WvliD~gdv 84 (113)
T d2o5aa1 53 ELKKVAQEQGIEIKRLEGYEQARWVLIDLGDV 84 (113)
T ss_dssp HHHHHHHHTTCCCCEEESTTTTSEEEEECSSE
T ss_pred HHHHHHHHhccccccccCCCCCCEEEeeCCCE
Confidence 47888988887777665566666 4888776
No 3
>d2q07a1 b.122.1.1 (A:460-527) Uncharacterized protein AF0587 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=8.85 E-value=52 Score=23.02 Aligned_cols=27 Identities=11% Similarity=0.496 Sum_probs=22.1
Q ss_pred CCccccccccCCCCccEEecCccccCccc
Q 017531 308 DAYQATGCYNLLCSGFVQTNNRIAIGAAI 336 (370)
Q Consensus 308 D~y~~TGCYNl~CpGFVQvs~~i~lG~~i 336 (370)
|.+...| |+.+||.+..+.+|.+|..+
T Consensus 6 ddfv~~G--~v~apgI~~~d~~I~~GD~V 32 (68)
T d2q07a1 6 GDFEVKG--TIFAGGVLRADEKIRPNDVV 32 (68)
T ss_dssp CSSCCCS--EEEGGGEEEECTTCCTTCEE
T ss_pred CCcccCC--cccccchhhhCCCCCCCCEE
Confidence 3465678 99999999999999998754
No 4
>d1o8ba2 d.58.40.1 (A:127-198) D-ribose-5-phosphate isomerase (RpiA), lid domain {Escherichia coli [TaxId: 562]}
Probab=8.04 E-value=88 Score=21.95 Aligned_cols=29 Identities=21% Similarity=0.505 Sum_probs=18.2
Q ss_pred HHHHHHHHhhc-CCcceE-EeCCCCC-eEEee
Q 017531 115 KFIRAHLNKIN-KPAVKT-IQSPDGD-IIDCV 143 (370)
Q Consensus 115 ~~i~~~Lk~iN-Kp~vKt-Iqs~dGd-iiDCV 143 (370)
+.++++|+++. ++.+.. +.|.+|. |+||-
T Consensus 15 ~~v~~~l~~~g~~~~~R~~~iTDnGN~IlD~~ 46 (72)
T d1o8ba2 15 SAVARQLVKLGGRPEYRQGVVTDNGNVILDVH 46 (72)
T ss_dssp HHHHHHHHHTTCEEEECTTCCCTTSCEEEEEE
T ss_pred HHHHHHHHHcCCCcccCcceEecCCCEEEECC
Confidence 44677777775 333333 5677776 78885
No 5
>d2o62a1 b.60.1.9 (A:133-269) Uncharacterized protein All1756 ortholog {Nostoc punctiforme [TaxId: 272131]}
Probab=7.71 E-value=1.1e+02 Score=23.92 Aligned_cols=24 Identities=25% Similarity=0.556 Sum_probs=18.4
Q ss_pred EEEEeeEECccccCCCccEEEEEEecCC
Q 017531 282 TIEAGWQVSPELYGDNYPRFFTYWTTDA 309 (370)
Q Consensus 282 sIeaGW~V~P~lYGD~~~RlFtyWT~D~ 309 (370)
.+|+||-|.| |.+-||--.|...|
T Consensus 101 ~~E~gwL~~~----~rR~RLVr~yd~~G 124 (137)
T d2o62a1 101 FLEAGWLIQS----DLRQRMIRSYNDKG 124 (137)
T ss_dssp EEEEEEEEET----TEEEEEEEEECTTS
T ss_pred eEEEEeeeCc----chhhhhhheeCCCC
Confidence 6999999976 56778888775543
No 6
>d1nbca_ b.2.2.2 (A:) Cellusomal scaffolding protein A, scaffoldin {Clostridium thermocellum [TaxId: 1515]}
Probab=7.71 E-value=2.6e+02 Score=21.97 Aligned_cols=46 Identities=13% Similarity=-0.023 Sum_probs=28.1
Q ss_pred ccccCCCCccEEecC-----ccccCcccccccccCCceEEEEEEEEeeccCC
Q 017531 314 GCYNLLCSGFVQTNN-----RIAIGAAISPTSSYNGGQFDISLLIWKVIDLK 360 (370)
Q Consensus 314 GCYNl~CpGFVQvs~-----~i~lG~~i~PvStygG~Qy~i~i~I~KDp~t~ 360 (370)
+|-|+.+ -||..+. +.++-..+.-.+.+.|.+.+|.+.|.|...++
T Consensus 70 ~~~~v~~-~~v~~~~~~~~adyYvEI~ft~g~l~pg~~~eiQ~ri~~~~~s~ 120 (155)
T d1nbca_ 70 ITSNVKG-TFVKMSSSTNNADTYLEISFTGGTLEPGAHVQIQGRFAKNDWSN 120 (155)
T ss_dssp CGGGEEE-EEEEEEEEETTEEEEEEEEESSCEECTTCEEEEEEEEEETTCCC
T ss_pred cccceee-eeeecCCCCCCCCEEEEEEecCceEcCCCcEEEEEEEeCCCCCc
Confidence 6666666 3554432 23333333444556678889999999976654
No 7
>d1qnta2 c.55.7.1 (A:6-91) O6-alkylguanine-DNA alkyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.56 E-value=27 Score=26.11 Aligned_cols=9 Identities=44% Similarity=1.028 Sum_probs=7.4
Q ss_pred CCCCCCCCC
Q 017531 149 PAFDHPKLK 157 (370)
Q Consensus 149 PAfdHPLLK 157 (370)
|||+||+|.
T Consensus 77 PalHhp~~q 85 (86)
T d1qnta2 77 PALHHPVFQ 85 (86)
T ss_dssp CCBCCHHHH
T ss_pred Ccccchhhc
Confidence 899999763
No 8
>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}
Probab=7.52 E-value=74 Score=23.15 Aligned_cols=25 Identities=40% Similarity=0.632 Sum_probs=18.2
Q ss_pred EEeCCCCCeEEeeecCCCCCCCCCCCC
Q 017531 131 TIQSPDGDIIDCVETHLQPAFDHPKLK 157 (370)
Q Consensus 131 tIqs~dGdiiDCVdI~kQPAfdHPLLK 157 (370)
++...+|++|.|+=-| +++..|+.+
T Consensus 69 ~v~~~~~~~ytC~V~H--~sl~~pi~~ 93 (100)
T d1muja1 69 TFIPSDDDIYDCKVEH--WGLEEPVLK 93 (100)
T ss_dssp EECCCTTCCEEEEEEC--TTSSSCEEE
T ss_pred EEcCCCCCEEEEEEEE--CCCCCceee
Confidence 4556789999999765 566666544
No 9
>d1i8ya_ g.3.16.1 (A:) N-terminal domain of granulin-1 {Carp (Cyprinus carpio) [TaxId: 7962]}
Probab=7.45 E-value=58 Score=19.17 Aligned_cols=7 Identities=57% Similarity=1.355 Sum_probs=5.5
Q ss_pred CCCCCce
Q 017531 190 SCPEGTI 196 (370)
Q Consensus 190 ~CP~GTV 196 (370)
-||+||-
T Consensus 7 icpdgtt 13 (28)
T d1i8ya_ 7 ICPDGTT 13 (28)
T ss_dssp CCCTTCE
T ss_pred EcCCCCe
Confidence 4999984
No 10
>d1vg0a2 d.16.1.6 (A:445-557) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=7.07 E-value=93 Score=23.51 Aligned_cols=20 Identities=30% Similarity=0.393 Sum_probs=12.6
Q ss_pred eeeccCCCCCCCCceeeeecC
Q 017531 182 QLWSFSGESCPEGTIPIRRTT 202 (370)
Q Consensus 182 q~w~~~g~~CP~GTVPIrRtt 202 (370)
++-...| .||+|.==+-=+|
T Consensus 44 ~~ss~~~-vCP~G~yv~~~St 63 (113)
T d1vg0a2 44 ELCSSTM-TCMKGTYLVHLTC 63 (113)
T ss_dssp EECGGGT-SSCTTCEEEEEEE
T ss_pred EecCCcc-cCCCCCEEEEEEE
Confidence 4434445 4999987665555
Done!