BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017532
(370 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 81/190 (42%), Gaps = 26/190 (13%)
Query: 155 ARKLAEKLEESVKSWK-KREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGL--DPIL 211
AR+ E +E K+W+ ++I LN EY +N+++ +G + D +
Sbjct: 18 ARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKV 77
Query: 212 VSK----LGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGL---------LSEVEFRNLV 258
+SK +G ++GDL KK+ ++ L E + D L L + E V
Sbjct: 78 ISKSFARIGNAYHKLGDL---KKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYV 134
Query: 259 SRNKA-------LIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIK 311
+ KA Y D+ +AV+ Y E I+R D +N+A L L ++I
Sbjct: 135 NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIA 194
Query: 312 VLENALERVP 321
A+E+ P
Sbjct: 195 DCNKAIEKDP 204
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 34.7 bits (78), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 260 RNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSI 310
+NK Y DY +A+R Y E ++RD + + +N+A CL L + ++
Sbjct: 17 KNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRAL 67
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%)
Query: 257 LVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENA 316
L+ +NK DY A++ Y E I+R+ D +N+A C L + ++K E
Sbjct: 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEEC 76
Query: 317 LERVPT 322
++ PT
Sbjct: 77 IQLEPT 82
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 261 NKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALE 318
N+A Y ++ A+++ EECI+ + I KA L ++D + ++ V + AL+
Sbjct: 55 NRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALD 112
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%)
Query: 266 YLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVP 321
Y D+ +AV+ Y E I+R D +N+A L L ++I A+E+ P
Sbjct: 14 YFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 69
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 34/64 (53%)
Query: 247 GLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDL 306
GL + + + ++ RN+A +L +DY A E + IE+D D+ A+ ++ L L L
Sbjct: 56 GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRL 115
Query: 307 SDSI 310
++
Sbjct: 116 DQAV 119
>pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
pdb|4GCN|B Chain B, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 127
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Query: 270 KDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETL 329
KD+ A Y++ IE D ++I NNKA + ++ ++ E A+E + L
Sbjct: 22 KDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKL 81
Query: 330 VVNLCSMYELAYVNHSDIKRTLSSWIGR 357
+ S A+ +D+ + W R
Sbjct: 82 IAKAMSRAGNAFQKQNDLSLAV-QWFHR 108
>pdb|1X7N|A Chain A, The Crystal Structure Of Pyrococcus Furiosus
Phosphoglucose Isomerase With Bound
5-Phospho-D-Arabinonate And Manganese
pdb|1X8E|A Chain A, Crystal Structure Of Pyrococcus Furiosus Phosphoglucose
Isomerase Free Enzyme
pdb|1X8E|B Chain B, Crystal Structure Of Pyrococcus Furiosus Phosphoglucose
Isomerase Free Enzyme
Length = 190
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 218 IQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLV 268
+ + G +EGAKKS R+ +M EG F D E ++ LV + ++Y V
Sbjct: 11 VDFETGIIEGAKKSVRRLSDM--EGYFVD----ERAWKELVEKEDPVVYEV 55
>pdb|2GC0|A Chain A, The Crystal Structure Of Phosphoglucose Isomerase From
Pyrococcus Furiosus In Complex With 5-Phospho-D-
Arabinonohydroxamate And Zinc
pdb|2GC0|B Chain B, The Crystal Structure Of Phosphoglucose Isomerase From
Pyrococcus Furiosus In Complex With 5-Phospho-D-
Arabinonohydroxamate And Zinc
pdb|2GC1|A Chain A, The Crystal Structure Of Phosphoglucose Isomerase From
Pyrococcus Furiosus In Complex With Sorbitol 6-Phosphate
And Zinc
pdb|2GC1|B Chain B, The Crystal Structure Of Phosphoglucose Isomerase From
Pyrococcus Furiosus In Complex With Sorbitol 6-Phosphate
And Zinc
pdb|2GC2|A Chain A, The Crystal Structure Of Phosphoglucose Isomerase From
Pyrococcus Furiosus In Complex With Fructose 6-Phosphate
And Zinc
pdb|2GC2|B Chain B, The Crystal Structure Of Phosphoglucose Isomerase From
Pyrococcus Furiosus In Complex With Fructose 6-Phosphate
And Zinc
pdb|2GC3|A Chain A, The Crystal Structure Of Phosphoglucose Isomerase From
Pyrococcus Furiosus In Complex With Mannose 6-Phosphate
And Zinc
pdb|2GC3|B Chain B, The Crystal Structure Of Phosphoglucose Isomerase From
Pyrococcus Furiosus In Complex With Mannose 6-Phosphate
And Zinc
Length = 188
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 218 IQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLV 268
+ + G +EGAKKS R+ +M EG F D E ++ LV + ++Y V
Sbjct: 11 VDFETGIIEGAKKSVRRLSDM--EGYFVD----ERAWKELVEKEDPVVYEV 55
>pdb|1QXJ|A Chain A, Crystal Structure Of Native Phosphoglucose Isomerase From
Pyrococcus Furiosus
pdb|1QXJ|B Chain B, Crystal Structure Of Native Phosphoglucose Isomerase From
Pyrococcus Furiosus
pdb|1QXR|A Chain A, Crystal Structure Of Phosphoglucose Isomerase From
Pyrococcus Furiosus In Complex With 5-Phosphoarabinonate
pdb|1QXR|B Chain B, Crystal Structure Of Phosphoglucose Isomerase From
Pyrococcus Furiosus In Complex With 5-Phosphoarabinonate
pdb|1QY4|A Chain A, Crystal Structure Of Phosphoglucose Isomerase From
Pyrococcus Furiosus In Complex With Gluconate
6-Phosphate
pdb|1QY4|B Chain B, Crystal Structure Of Phosphoglucose Isomerase From
Pyrococcus Furiosus In Complex With Gluconate
6-Phosphate
Length = 189
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 218 IQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLV 268
+ + G +EGAKKS R+ +M EG F D E ++ LV + ++Y V
Sbjct: 10 VDFETGIIEGAKKSVRRLSDM--EGYFVD----ERAWKELVEKEDPVVYEV 54
>pdb|3SXW|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or69
Length = 201
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 218 IQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLV 268
+ + G +EGAKKS R+ +M EG F D E ++ LV + ++Y V
Sbjct: 12 VDFETGIIEGAKKSVRRLSDM--EGYFVD----ERAWKELVEKEDPVVYEV 56
>pdb|3K8P|D Chain D, Structural Basis For Vesicle Tethering By The Dsl1 Complex
Length = 709
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 127 AVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLI 181
+++P+ S+ +R++EL +F+ +KL K E EE W + I + N I
Sbjct: 85 SLIPLIESDTTTRSNRYHELQEFISKKLNNKTLENFEE----WLRERILICNEXI 135
>pdb|1HZ4|A Chain A, Crystal Structure Of Transcription Factor Malt Domain Iii
Length = 373
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 223 GDLEGAKKSFNRVEEMLNEGKFEDGLLS 250
GDL+ A+ NR+E +L GK+ +S
Sbjct: 188 GDLDNARSQLNRLENLLGNGKYHSDWIS 215
>pdb|4EI7|A Chain A, Crystal Structure Of Bacillus Cereus Tubz, Gdp-Form
pdb|4EI7|B Chain B, Crystal Structure Of Bacillus Cereus Tubz, Gdp-Form
pdb|4EI9|A Chain A, Crystal Structure Of Bacillus Cereus Tubz, Gtp-Form
pdb|4EI9|B Chain B, Crystal Structure Of Bacillus Cereus Tubz, Gtp-Form
Length = 389
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 295 NKALCLMYLRDLSDSIKVLENALERVPTVALNE 327
N L L RD ++++KVLENA R+ ++A+N+
Sbjct: 143 NFGLLLTLPRD-AEALKVLENATSRIRSIAMNQ 174
>pdb|2XTB|A Chain A, Crystal Structure Of Trypanosoma Brucei Rhodesiense
Adenosine Kinase Complexed With Activator
pdb|3OTX|A Chain A, Crystal Structure Of Trypanosoma Brucei Rhodesiense
Adenosine Kinase Complexed With Inhibitor Ap5a
pdb|3OTX|B Chain B, Crystal Structure Of Trypanosoma Brucei Rhodesiense
Adenosine Kinase Complexed With Inhibitor Ap5a
Length = 347
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/54 (20%), Positives = 28/54 (51%)
Query: 280 EECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNL 333
EE R +++ K +++ RD+ ++ ++ +E VP L++ V+++
Sbjct: 243 EEIARRAVSEVPYTGTKGRVVVFTRDIESTVLATKDGVETVPVPQLDQDKVIDM 296
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,883,203
Number of Sequences: 62578
Number of extensions: 423762
Number of successful extensions: 1247
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1234
Number of HSP's gapped (non-prelim): 22
length of query: 370
length of database: 14,973,337
effective HSP length: 100
effective length of query: 270
effective length of database: 8,715,537
effective search space: 2353194990
effective search space used: 2353194990
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)