BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017532
(370 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8K2L8|TPC12_MOUSE Trafficking protein particle complex subunit 12 OS=Mus musculus
GN=Trappc12 PE=1 SV=2
Length = 797
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 113/358 (31%), Positives = 177/358 (49%), Gaps = 29/358 (8%)
Query: 35 LQDLATRGSWRTIIDNVSR---ARSQSLLTQ--PHHHLT---YLAYNTLALM-KLRRFDE 85
L+ L + +WR +D R A Q P H T L + LAL+ KL F
Sbjct: 446 LKQLISCRNWRAAVDLCGRLLTAHGQGYGKNGLPTSHTTDSLQLWFVRLALLVKLGLFQN 505
Query: 86 AQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYE 145
A+ E + + + YE YPH+YP R GSMVPFS+R L+A L L N Q LDR +
Sbjct: 506 AEMEFEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHR 565
Query: 146 LLDFVREKLA---RKLAE----------KLEESVKSWKKREIFVLNCLIGYHLSSKEYNV 192
+ + LA + LAE + SV+ W+ R VL + L K+Y +
Sbjct: 566 VKTVCSKILANLEQGLAEDGGLSSVTQESRQASVQLWRSRLGRVLYSMANCLLLMKDYVL 625
Query: 193 CFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEV 252
D I +P L+S +G I +Q+GD++ A+K F VE++ + DGL ++
Sbjct: 626 AVDAYLTVIKYYPEQEPQLLSGIGRILLQIGDIKTAEKYFQDVEKVTQK---LDGLQGKI 682
Query: 253 EFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKV 312
+V N+A +YL ++ A + + E + D + VA NN A+CL+YL L DS++
Sbjct: 683 ----MVLMNRAFLYLGQNNFAEAHKFFTEILRMDPTNAVANNNAAVCLLYLGKLKDSLRQ 738
Query: 313 LENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDDFDSSCTRI 370
LE +++ P L+E+++ NL +MYEL K++L + D F++ C ++
Sbjct: 739 LEAMVQQDPRHYLHESVLFNLTTMYELESSRSMQKKQSLLEAVASKEGDSFNTQCLKL 796
>sp|Q8WVT3|TPC12_HUMAN Trafficking protein particle complex subunit 12 OS=Homo sapiens
GN=TRAPPC12 PE=1 SV=3
Length = 735
Score = 132 bits (333), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 110/359 (30%), Positives = 177/359 (49%), Gaps = 29/359 (8%)
Query: 34 SLQDLATRGSWRTIIDNVSR---ARSQS-----LLTQPHHHLTYLAYNTLALM-KLRRFD 84
L+ L + +WR +D R A Q LLT L + LAL+ KL F
Sbjct: 383 GLKQLISCRNWRAAVDLCGRLLTAHGQGYGKSGLLTSHTTDSLQLWFVRLALLVKLGLFQ 442
Query: 85 EAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFY 144
A+ E + + + YE YPH+YP R GSMVPFS+R L+A L L N Q LDR +
Sbjct: 443 NAEMEFEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLH 502
Query: 145 ELLDFVREKLA---RKLAE----------KLEESVKSWKKREIFVLNCLIGYHLSSKEYN 191
++ + LA + LAE + S++ W+ R V+ + L K+Y
Sbjct: 503 KVKTVCSKILANLEQGLAEDGGMSSVTQEGRQASIRLWRSRLGRVMYSMANCLLLMKDYV 562
Query: 192 VCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSE 251
+ + + I +P L+S +G I +Q+GD++ A+K F VE++ + DGL +
Sbjct: 563 LAVEAYHSVIKYYPEQEPQLLSGIGRISLQIGDIKTAEKYFQDVEKVTQK---LDGLQGK 619
Query: 252 VEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIK 311
+ +V N A ++L ++ A R + E + D + VA NN A+CL+YL L DS++
Sbjct: 620 I----MVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNAAVCLLYLGKLKDSLR 675
Query: 312 VLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDDFDSSCTRI 370
LE +++ P L+E+++ NL +MYEL K+ L + D F++ C ++
Sbjct: 676 QLEAMVQQDPRHYLHESVLFNLTTMYELESSRSMQKKQALLEAVAGKEGDSFNTQCLKL 734
>sp|P15705|STI1_YEAST Heat shock protein STI1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=STI1 PE=1 SV=1
Length = 589
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 81/190 (42%), Gaps = 26/190 (13%)
Query: 155 ARKLAEKLEESVKSWK-KREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGL--DPIL 211
AR+ E +E K+W+ ++I LN EY +N+++ +G + D +
Sbjct: 275 ARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKV 334
Query: 212 VSK----LGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGL---------LSEVEFRNLV 258
+SK +G ++GDL KK+ ++ L E + D L L + E V
Sbjct: 335 ISKSFARIGNAYHKLGDL---KKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYV 391
Query: 259 SRNKA-------LIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIK 311
+ KA Y D+ +AV+ Y E I+R D +N+A L L ++I
Sbjct: 392 NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIA 451
Query: 312 VLENALERVP 321
A+E+ P
Sbjct: 452 DCNKAIEKDP 461
>sp|Q54DA8|STIP1_DICDI Protein STIP1 homolog OS=Dictyostelium discoideum GN=sti1 PE=3 SV=1
Length = 564
Score = 40.8 bits (94), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 35/54 (64%)
Query: 270 KDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323
K++ A+ Y++ +E D +DI+A+NNKA L+ + L ++I+ + ALE+ +
Sbjct: 258 KEFEQAIVHYDKAVELDSSDILAMNNKAAVLIEQQKLDEAIETCKKALEKAQEI 311
>sp|A4K2V0|TOM34_PONAB Mitochondrial import receptor subunit TOM34 OS=Pongo abelii
GN=TOMM34 PE=2 SV=1
Length = 309
Score = 37.7 bits (86), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
Query: 222 VGDLEGAKKSFNRVEEMLNEG-------KFEDGLLSEVEFRNLVSRNKALIYLVGKDYVS 274
GD+E AK E++ +G K+ + LL + N+AL YLV K Y
Sbjct: 187 AGDVEKAKVLKEEGNELVKKGNHKKAIEKYSESLLCS-NLESATYSNRALCYLVLKQYTE 245
Query: 275 AVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVP 321
AV++ E ++ D ++ A +A L+D S + N L+ P
Sbjct: 246 AVKDCTEALKLDGKNVKAFYRRAQAHKALKDYKSSFADISNLLQIEP 292
>sp|Q28G25|BBS4_XENTR Bardet-Biedl syndrome 4 protein homolog OS=Xenopus tropicalis
GN=bbs4 PE=2 SV=1
Length = 516
Score = 37.0 bits (84), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 67/142 (47%), Gaps = 15/142 (10%)
Query: 178 NCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEE 237
N LI H K+Y C ++ E + G+ V ++Q + LEG +++E
Sbjct: 33 NWLIHLHYVRKDYESCKAVIKEQLQATQGVCEYAV----YVQALILRLEG------KIQE 82
Query: 238 MLNEGKFED-GLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNK 296
L F+ +L+ NL ++L +L+GK + +AV Y E + D +N
Sbjct: 83 SLE--LFQTCAVLNPTSSDNLKQVARSL-FLLGK-HKAAVEVYNEAARLNQKDWEICHNL 138
Query: 297 ALCLMYLRDLSDSIKVLENALE 318
+C ++L+DLS S + L AL+
Sbjct: 139 GVCYLFLKDLSKSKEQLTLALQ 160
>sp|Q15785|TOM34_HUMAN Mitochondrial import receptor subunit TOM34 OS=Homo sapiens
GN=TOMM34 PE=1 SV=2
Length = 309
Score = 36.6 bits (83), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
Query: 222 VGDLEGAKKSFNRVEEMLNEG-------KFEDGLLSEVEFRNLVSRNKALIYLVGKDYVS 274
GD+E A+ E++ +G K+ + LL + N+AL YLV K Y
Sbjct: 187 AGDVEKARVLKEEGNELVKKGNHKKAIEKYSESLLCS-NLESATYSNRALCYLVLKQYTE 245
Query: 275 AVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVP 321
AV++ E ++ D ++ A +A L+D S + N L+ P
Sbjct: 246 AVKDCTEALKLDGKNVKAFYRRAQAHKALKDYKSSFADISNLLQIEP 292
>sp|Q43468|STIP_SOYBN Heat shock protein STI OS=Glycine max GN=STI PE=2 SV=1
Length = 569
Score = 36.6 bits (83), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%)
Query: 259 SRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALE 318
+R K + Y A + Y E I+R+ D A +N+A C L + + +K E +E
Sbjct: 384 AREKGNELFKQQKYPEATKHYTEAIKRNPKDAKAYSNRAACYTKLGAMPEGLKDAEKCIE 443
Query: 319 RVPT 322
PT
Sbjct: 444 LDPT 447
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 270 KDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALER 319
KD+ +A+ Y + +E D DI + N+A + + D IK E A+ER
Sbjct: 256 KDFETAIGHYSKALELDDEDISYLTNRAAVYLEMGKFEDCIKDCEKAVER 305
>sp|Q96RK4|BBS4_HUMAN Bardet-Biedl syndrome 4 protein OS=Homo sapiens GN=BBS4 PE=1 SV=2
Length = 519
Score = 36.2 bits (82), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 15/141 (10%)
Query: 178 NCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEE 237
N LI H K+Y C ++ E + GL + ++Q + LEG ++E
Sbjct: 36 NWLIHLHYIRKDYEACKAVIKEQLQETQGLCEYAI----YVQALIFRLEG------NIQE 85
Query: 238 MLNEGKFED-GLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNK 296
L F+ +LS NL ++L +L+GK + +A+ Y E + + D +N
Sbjct: 86 SLE--LFQTCAVLSPQSADNLKQVARSL-FLLGK-HKAAIEVYNEAAKLNQKDWEISHNL 141
Query: 297 ALCLMYLRDLSDSIKVLENAL 317
+C +YL+ + + L NAL
Sbjct: 142 GVCYIYLKQFNKAQDQLHNAL 162
>sp|Q8ILC1|STI1L_PLAF7 STI1-like protein OS=Plasmodium falciparum (isolate 3D7)
GN=PF14_0324 PE=4 SV=1
Length = 564
Score = 35.8 bits (81), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 260 RNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALER 319
+NK Y D+ +A +EY+E I R+ ND +N+A L L + +++ + A+E
Sbjct: 382 KNKGNEYFKNNDFPNAKKEYDEAIRRNPNDAKLYSNRAAALTKLIEYPSALEDVMKAIEL 441
Query: 320 VPT 322
PT
Sbjct: 442 DPT 444
>sp|Q1JQ97|BBS4_BOVIN Bardet-Biedl syndrome 4 protein homolog OS=Bos taurus GN=BBS4 PE=2
SV=1
Length = 519
Score = 35.0 bits (79), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 13/140 (9%)
Query: 178 NCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEE 237
N LI + K+Y C ++ E + +GL + ++Q + LEG + R+ +
Sbjct: 36 NWLIHLYYIQKDYEACKAVIKEQLQETHGLCEYAI----YVQALIFRLEGNIQESLRLFQ 91
Query: 238 MLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKA 297
M LS NL ++L +L+GK + +A+ Y E + + D +N
Sbjct: 92 MC-------AFLSPQCADNLKQVARSL-FLLGK-HKAAIEVYNEAAKLNQKDWEICHNLG 142
Query: 298 LCLMYLRDLSDSIKVLENAL 317
+C +YL+ + L NAL
Sbjct: 143 VCYIYLKQFDKAQDQLHNAL 162
>sp|Q645M6|FADD_BOVIN Protein FADD OS=Bos taurus GN=FADD PE=2 SV=1
Length = 209
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 147 LDFVREKLARKLAEKLEESVKSWKK--REIFVLNCLIGYHLSSKEYNVCFDLMNE 199
++ + EK R LAE++ E ++ WK RE ++CL+G L + NV DL+ E
Sbjct: 126 IEAIEEKYPRNLAEQVRELLRVWKNSTRENAAVSCLVGA-LRGCQLNVVADLIEE 179
>sp|Q60864|STIP1_MOUSE Stress-induced-phosphoprotein 1 OS=Mus musculus GN=Stip1 PE=1 SV=1
Length = 543
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 19/158 (12%)
Query: 184 HLSSKEYNVCFDLMNESI--GRGNGLDPILVSK----LGFIQMQVGDLEGAKKSFN---- 233
H +YN C +L ++I GR N D ++K +G + + A +N
Sbjct: 269 HFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLA 328
Query: 234 --RVEEMLNEGKFEDGLLSEVE---FRN----LVSRNKALIYLVGKDYVSAVREYEECIE 284
R ++L + + + +L E E + N L +NK DY A++ Y E I+
Sbjct: 329 EHRTPDVLKKCQQAEKILKEQERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIK 388
Query: 285 RDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPT 322
R+ D +N+A C L + ++K E ++ PT
Sbjct: 389 RNPRDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT 426
>sp|Q5PPS5|TTC34_XENLA Tetratricopeptide repeat protein 34 OS=Xenopus laevis GN=ttc34 PE=2
SV=2
Length = 562
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 78/160 (48%), Gaps = 17/160 (10%)
Query: 185 LSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKF 244
++ ++Y+ F+ + +S GN +D + ++ G + ++ +L A + + GK
Sbjct: 315 IAKEKYDEAFNYLRKSFN-GNAIDETVRARYGVLHVKYRNLLVAAQELCTLA-----GKQ 368
Query: 245 EDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINN--------- 295
+ + V+F + R ++L G++ S ++E + DY + I++
Sbjct: 369 PEEVEILVKFMDKRER-QSLFQAAGQEGNSLIQENQHEKALDYYSLAVISSNNNPKYLRQ 427
Query: 296 KALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCS 335
+A+CL +LRD S +IK ++ A+ R + L +T + CS
Sbjct: 428 RAMCLTHLRDYSSAIKDIDKAILRHSSHDL-KTQAEDYCS 466
>sp|O54981|STIP1_CRIGR Stress-induced-phosphoprotein 1 OS=Cricetulus griseus GN=STIP1 PE=2
SV=1
Length = 543
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 19/158 (12%)
Query: 184 HLSSKEYNVCFDLMNESI--GRGNGLDPILVSK----LGFIQMQVGDLEGAKKSFN---- 233
H +YN C +L ++I GR N D ++K +G + + A +N
Sbjct: 269 HFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEERYKDAIHFYNKSLA 328
Query: 234 --RVEEMLNEGKFEDGLLSEVE---FRN----LVSRNKALIYLVGKDYVSAVREYEECIE 284
R ++L + + + +L E E + N L +NK DY A++ Y E I+
Sbjct: 329 EHRTPDVLKKCQQAEKILKEQERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIK 388
Query: 285 RDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPT 322
R+ D +N+A C L + ++K E ++ PT
Sbjct: 389 RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT 426
>sp|O35814|STIP1_RAT Stress-induced-phosphoprotein 1 OS=Rattus norvegicus GN=Stip1 PE=1
SV=1
Length = 543
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 19/158 (12%)
Query: 184 HLSSKEYNVCFDLMNESI--GRGNGLDPILVSK----LGFIQMQVGDLEGAKKSFN---- 233
H +YN C +L ++I GR N D ++K +G + + A +N
Sbjct: 269 HFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEERYKDAIHFYNKSLA 328
Query: 234 --RVEEMLNEGKFEDGLLSEVE---FRN----LVSRNKALIYLVGKDYVSAVREYEECIE 284
R ++L + + + +L E E + N L +NK DY A++ Y E I+
Sbjct: 329 EHRTPDVLKKCQQAEKILKEQERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIK 388
Query: 285 RDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPT 322
R+ D +N+A C L + ++K E ++ PT
Sbjct: 389 RNPRDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT 426
>sp|A1R6V4|LEU1_ARTAT 2-isopropylmalate synthase OS=Arthrobacter aurescens (strain TC1)
GN=leuA PE=3 SV=1
Length = 579
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/164 (20%), Positives = 70/164 (42%), Gaps = 34/164 (20%)
Query: 211 LVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGL-----------LSEVEFRNLVS 259
L+ K+G+ +++VG ++ F+ V +++ G D + L E + +LV
Sbjct: 69 LLVKMGYKEIEVGFPSASQTDFDFVRQLIEGGHIPDDVSIQVLTQAREHLIERTYESLVG 128
Query: 260 RNKALIYLVGKDYVSAVREYEECIERDYNDI--VAINNKALCLMYLRDLSDSIKVLE--- 314
+A+++L ++V + +D + I +A+ LC Y L+D+ E
Sbjct: 129 AKQAIVHLYNS---TSVLQRRVVFNQDEDGILDIALQGARLCKKYEETLTDTHITYEYSP 185
Query: 315 ---------------NALERVPTVALNETLVVNLCSMYELAYVN 343
NA+ V + ++ +++NL + E+A N
Sbjct: 186 ESFTGTELEYAARVCNAIADVFEASADKQVIINLPATVEMATPN 229
>sp|Q9USI5|STI1_SCHPO Heat shock protein sti1 homolog OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sti1 PE=3 SV=1
Length = 591
Score = 32.7 bits (73), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 77/186 (41%), Gaps = 26/186 (13%)
Query: 162 LEESVKSWKK-REIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGL--DPILVSK---- 214
+E+ K+W ++I LN L + + + + C ++I +G L D L++K
Sbjct: 285 IEQYKKAWDTYKDITYLNNLAAAYFEADQLDDCIKTCEDAIEQGRELRADFKLIAKALGR 344
Query: 215 LGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGL--LSEVEFRNLVSRNKALI------- 265
LG + GDL K+ + + L E + D L L + E + +A I
Sbjct: 345 LGTTYQKRGDL---VKAIDYYQRSLTEHRTPDILSRLKDAEKSKELQDREAYIDPDKAEE 401
Query: 266 -------YLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALE 318
D+ +A++EY E +R +D N+A + + ++ I+ A+E
Sbjct: 402 SRVKGNELFKSGDFANAIKEYTEMTKRAPSDPRGFGNRAAAYLKVMAPAECIRDCNKAIE 461
Query: 319 RVPTVA 324
P A
Sbjct: 462 LDPNFA 467
>sp|A2XY73|COPE2_ORYSI Coatomer subunit epsilon-2 OS=Oryza sativa subsp. indica
GN=H0413E07.10 PE=3 SV=2
Length = 297
Score = 32.7 bits (73), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 21/91 (23%)
Query: 293 INNKALCLMYLRDLSDSIKVLENALERVPTVALNETLV-VNLCSM------------YEL 339
+N KALCLM++ + D+ +L +L + A ETL + +CS+ +L
Sbjct: 214 LNGKALCLMHMGNFEDAEGLLLESLNKDAKDA--ETLANLVVCSLNLGKSASRYLNQLKL 271
Query: 340 AYVNHSDIKRTLSSWIGRVAPDDFDSSCTRI 370
A+ +H +KR S A D FD +C I
Sbjct: 272 AHPDHMLVKRMSS------AEDSFDRACQAI 296
>sp|Q6MSP5|KAD_MYCMS Adenylate kinase OS=Mycoplasma mycoides subsp. mycoides SC (strain
PG1) GN=adk PE=3 SV=1
Length = 213
Score = 32.7 bits (73), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 7/71 (9%)
Query: 202 GRGNGLDPILVSKLGFIQMQVGDLEGAKKSFN-----RVEEMLNEGKF-EDGLLSEVEFR 255
G+G + LV+KL FIQ+ GDL + S N + +E +N GK+ D +++++ +
Sbjct: 12 GKGTQAEQ-LVNKLNFIQVSTGDLMRKEISLNTRLGLKCQEYMNAGKYVPDQIVNQIVSQ 70
Query: 256 NLVSRNKALIY 266
L + N LI+
Sbjct: 71 FLKNTNDKLIF 81
>sp|P0C541|COPE2_ORYSJ Coatomer subunit epsilon-2 OS=Oryza sativa subsp. japonica
GN=Os04g0644700 PE=3 SV=1
Length = 297
Score = 32.7 bits (73), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 21/91 (23%)
Query: 293 INNKALCLMYLRDLSDSIKVLENALERVPTVALNETLV-VNLCSM------------YEL 339
+N KALCLM++ + D+ +L +L + A ETL + +CS+ +L
Sbjct: 214 LNGKALCLMHMGNFEDAEGLLLESLNKDAKDA--ETLANLVVCSLNLGKSASRYLNQLKL 271
Query: 340 AYVNHSDIKRTLSSWIGRVAPDDFDSSCTRI 370
A+ +H +KR S A D FD +C I
Sbjct: 272 AHPDHMLVKRMSS------AEDSFDRACQAI 296
>sp|P31948|STIP1_HUMAN Stress-induced-phosphoprotein 1 OS=Homo sapiens GN=STIP1 PE=1 SV=1
Length = 543
Score = 32.3 bits (72), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%)
Query: 257 LVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENA 316
L +NK DY A++ Y E I+R+ D +N+A C L + ++K E
Sbjct: 361 LEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEEC 420
Query: 317 LERVPT 322
++ PT
Sbjct: 421 IQLEPT 426
>sp|Q3ZBZ8|STIP1_BOVIN Stress-induced-phosphoprotein 1 OS=Bos taurus GN=STIP1 PE=2 SV=1
Length = 543
Score = 32.3 bits (72), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%)
Query: 257 LVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENA 316
L +NK DY A++ Y E I+R+ D +N+A C L + ++K E
Sbjct: 361 LEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEEC 420
Query: 317 LERVPT 322
++ PT
Sbjct: 421 IQLEPT 426
>sp|Q4R8N7|STIP1_MACFA Stress-induced-phosphoprotein 1 OS=Macaca fascicularis GN=STIP1
PE=2 SV=1
Length = 543
Score = 32.3 bits (72), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%)
Query: 257 LVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENA 316
L +NK DY A++ Y E I+R+ D +N+A C L + ++K E
Sbjct: 361 LEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEEC 420
Query: 317 LERVPT 322
++ PT
Sbjct: 421 IQLEPT 426
>sp|A2C808|SYC_PROM3 Cysteine--tRNA ligase OS=Prochlorococcus marinus (strain MIT 9303)
GN=cysS PE=3 SV=2
Length = 499
Score = 32.0 bits (71), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 280 EECIERDYNDIVAIN---NKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSM 336
E+C E + I A++ N + + L DL+ ++ L N LER T A+ ET +NL
Sbjct: 360 EQCSEIRQHFIDALDDDLNSSGAIAVLFDLARPLRALANRLERGDTKAIQETAQLNLLPR 419
Query: 337 YEL 339
++L
Sbjct: 420 WQL 422
>sp|Q8C1Z7|BBS4_MOUSE Bardet-Biedl syndrome 4 protein homolog OS=Mus musculus GN=Bbs4
PE=2 SV=1
Length = 520
Score = 32.0 bits (71), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 15/142 (10%)
Query: 178 NCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEE 237
N LI H K+Y C ++ E + GL + ++Q + LEG ++E
Sbjct: 36 NWLIHLHYIRKDYEACKAVIKEQLQETQGLCEYAI----YVQALIFRLEG------NIQE 85
Query: 238 MLNEGKFED-GLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNK 296
L F+ +LS NL ++L +L+GK + +A Y E + + D +N
Sbjct: 86 SLE--LFQTCAVLSPQCADNLKQVARSL-FLLGK-HKAATEVYNEAAKLNQKDWEICHNL 141
Query: 297 ALCLMYLRDLSDSIKVLENALE 318
+C YL+ + + L +AL+
Sbjct: 142 GVCYTYLKQFNKAQDQLHSALQ 163
>sp|Q5RAP0|UN45A_PONAB Protein unc-45 homolog A OS=Pongo abelii GN=UNC45A PE=2 SV=1
Length = 929
Score = 31.6 bits (70), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 51/104 (49%), Gaps = 2/104 (1%)
Query: 247 GLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDL 306
GL + + + ++ RN+A YL +DY A E + IE+D D+ A+ ++ L L L
Sbjct: 34 GLDATPQDQAVLHRNRAACYLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRL 93
Query: 307 SDSIKVLENALERVPTVALNETLVVNLCSMYE--LAYVNHSDIK 348
++ L+ + P + + + N+ + + Y++ +D K
Sbjct: 94 DQAVLDLQRCVSLEPKNKVFQEALRNIGGQIQEKVRYMSSTDAK 137
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 134,059,348
Number of Sequences: 539616
Number of extensions: 5346885
Number of successful extensions: 16236
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 16166
Number of HSP's gapped (non-prelim): 90
length of query: 370
length of database: 191,569,459
effective HSP length: 119
effective length of query: 251
effective length of database: 127,355,155
effective search space: 31966143905
effective search space used: 31966143905
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)