Query 017532
Match_columns 370
No_of_seqs 280 out of 3317
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 09:25:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017532.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017532hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2796 Uncharacterized conser 100.0 2.6E-49 5.7E-54 332.5 30.3 340 24-370 17-366 (366)
2 KOG4626 O-linked N-acetylgluco 99.9 5.5E-22 1.2E-26 185.1 22.0 303 35-359 191-524 (966)
3 TIGR00990 3a0801s09 mitochondr 99.9 6.7E-20 1.5E-24 184.0 35.6 284 34-361 133-499 (615)
4 KOG4626 O-linked N-acetylgluco 99.9 7.4E-22 1.6E-26 184.3 19.5 262 37-318 227-521 (966)
5 PRK15174 Vi polysaccharide exp 99.9 3.3E-19 7.3E-24 179.2 30.1 296 24-362 72-385 (656)
6 TIGR00990 3a0801s09 mitochondr 99.8 4.7E-18 1E-22 170.7 32.2 310 31-362 163-541 (615)
7 PRK11788 tetratricopeptide rep 99.8 2.3E-17 4.9E-22 156.8 31.7 264 26-323 33-315 (389)
8 PRK15174 Vi polysaccharide exp 99.8 1.3E-17 2.7E-22 167.9 30.4 286 34-362 48-351 (656)
9 TIGR02917 PEP_TPR_lipo putativ 99.8 1.3E-17 2.8E-22 173.8 30.5 307 24-355 563-897 (899)
10 TIGR02917 PEP_TPR_lipo putativ 99.8 5.4E-17 1.2E-21 169.2 30.9 306 24-361 529-869 (899)
11 KOG1126 DNA-binding cell divis 99.8 4.7E-18 1E-22 160.8 18.8 256 34-338 325-602 (638)
12 PRK11447 cellulose synthase su 99.8 1.4E-16 3.1E-21 170.2 32.6 274 34-338 118-430 (1157)
13 PRK11447 cellulose synthase su 99.8 1.2E-16 2.6E-21 170.8 29.7 279 35-362 276-670 (1157)
14 PRK09782 bacteriophage N4 rece 99.8 2.2E-16 4.8E-21 163.0 26.8 142 179-338 581-722 (987)
15 PRK09782 bacteriophage N4 rece 99.8 7.9E-16 1.7E-20 159.0 29.2 238 65-365 476-713 (987)
16 PRK10049 pgaA outer membrane p 99.7 5.3E-15 1.1E-19 151.8 31.6 330 25-366 80-464 (765)
17 COG3063 PilF Tfp pilus assembl 99.7 8E-16 1.7E-20 128.7 19.1 163 175-356 36-200 (250)
18 KOG0547 Translocase of outer m 99.7 2.8E-15 6.2E-20 137.3 23.4 136 174-323 326-461 (606)
19 PRK11788 tetratricopeptide rep 99.7 4.7E-15 1E-19 140.9 26.1 251 73-362 41-315 (389)
20 TIGR02521 type_IV_pilW type IV 99.7 4E-15 8.7E-20 129.9 23.0 195 126-357 37-231 (234)
21 KOG1129 TPR repeat-containing 99.7 7.7E-17 1.7E-21 140.8 11.6 236 67-336 221-472 (478)
22 PRK12370 invasion protein regu 99.7 1.2E-14 2.5E-19 144.1 24.9 147 175-338 339-486 (553)
23 KOG1126 DNA-binding cell divis 99.7 1.8E-15 3.9E-20 143.5 18.0 237 33-323 358-624 (638)
24 PF13429 TPR_15: Tetratricopep 99.7 6.4E-16 1.4E-20 140.2 14.3 259 33-353 13-272 (280)
25 PLN03218 maturation of RBCL 1; 99.7 1.8E-13 3.8E-18 142.7 33.6 166 175-356 615-781 (1060)
26 KOG1173 Anaphase-promoting com 99.7 1E-14 2.2E-19 135.9 20.3 145 179-330 385-529 (611)
27 PRK10049 pgaA outer membrane p 99.7 1.9E-13 4E-18 140.4 31.8 293 32-364 53-428 (765)
28 KOG1155 Anaphase-promoting com 99.7 1.3E-14 2.9E-19 132.2 20.4 248 75-358 235-496 (559)
29 COG3063 PilF Tfp pilus assembl 99.7 1.2E-14 2.6E-19 121.7 18.6 206 123-365 38-243 (250)
30 KOG0624 dsRNA-activated protei 99.7 2.6E-14 5.7E-19 125.8 21.3 276 24-324 34-375 (504)
31 TIGR02521 type_IV_pilW type IV 99.7 4.3E-14 9.4E-19 123.3 23.0 169 174-361 31-201 (234)
32 PLN03218 maturation of RBCL 1; 99.7 4.7E-13 1E-17 139.5 33.6 289 30-356 439-746 (1060)
33 KOG0550 Molecular chaperone (D 99.6 5.4E-15 1.2E-19 133.0 16.2 257 34-323 55-320 (486)
34 PRK12370 invasion protein regu 99.6 7E-14 1.5E-18 138.5 25.5 169 174-361 295-473 (553)
35 KOG0547 Translocase of outer m 99.6 1.1E-13 2.3E-18 127.1 24.1 134 175-322 361-494 (606)
36 PRK15359 type III secretion sy 99.6 5.1E-15 1.1E-19 120.2 13.9 121 194-334 13-133 (144)
37 TIGR03302 OM_YfiO outer membra 99.6 5.4E-14 1.2E-18 124.2 21.6 175 174-361 33-235 (235)
38 KOG1129 TPR repeat-containing 99.6 5.9E-15 1.3E-19 129.1 14.6 228 120-366 223-466 (478)
39 KOG0548 Molecular co-chaperone 99.6 6.2E-14 1.3E-18 130.2 20.5 161 175-339 258-438 (539)
40 KOG1840 Kinesin light chain [C 99.6 2.6E-13 5.7E-18 129.6 22.6 257 70-358 202-479 (508)
41 PRK10370 formate-dependent nit 99.6 1.4E-13 3.1E-18 117.7 18.6 124 187-324 52-178 (198)
42 PRK11189 lipoprotein NlpI; Pro 99.6 3.8E-13 8.2E-18 122.8 22.0 237 42-337 40-284 (296)
43 KOG2002 TPR-containing nuclear 99.6 1.3E-13 2.8E-18 135.6 19.6 260 24-339 160-426 (1018)
44 PLN03081 pentatricopeptide (PP 99.6 2E-12 4.4E-17 132.0 28.8 289 26-358 257-557 (697)
45 PRK11189 lipoprotein NlpI; Pro 99.6 6.6E-13 1.4E-17 121.2 22.6 130 175-319 65-194 (296)
46 KOG1155 Anaphase-promoting com 99.6 1.3E-12 2.9E-17 119.3 23.8 132 174-319 364-495 (559)
47 PF13429 TPR_15: Tetratricopep 99.6 1.4E-14 3E-19 131.5 11.0 226 36-319 52-277 (280)
48 PRK15359 type III secretion sy 99.6 2.2E-13 4.8E-18 110.6 15.8 113 177-303 27-139 (144)
49 KOG1840 Kinesin light chain [C 99.5 2.5E-12 5.3E-17 123.0 23.9 256 34-319 205-479 (508)
50 COG2956 Predicted N-acetylgluc 99.5 8.4E-12 1.8E-16 109.4 24.8 273 24-359 31-313 (389)
51 TIGR02552 LcrH_SycD type III s 99.5 5.2E-13 1.1E-17 107.3 16.3 115 195-323 4-118 (135)
52 KOG1125 TPR repeat-containing 99.5 3.4E-13 7.5E-18 126.3 16.2 244 25-322 282-530 (579)
53 PRK15179 Vi polysaccharide bio 99.5 5.7E-12 1.2E-16 126.0 25.9 188 117-322 26-220 (694)
54 PLN03081 pentatricopeptide (PP 99.5 4.3E-12 9.3E-17 129.6 25.6 282 29-356 124-453 (697)
55 KOG2003 TPR repeat-containing 99.5 1.4E-11 3.1E-16 112.3 25.8 270 32-336 423-706 (840)
56 PRK10747 putative protoheme IX 99.5 1.3E-11 2.9E-16 117.4 27.0 271 37-353 93-385 (398)
57 PLN02789 farnesyltranstransfer 99.5 8.7E-12 1.9E-16 114.1 24.1 131 191-338 125-266 (320)
58 KOG2376 Signal recognition par 99.5 4.1E-12 9E-17 119.2 21.5 214 28-290 12-258 (652)
59 KOG2003 TPR repeat-containing 99.5 2.3E-12 5.1E-17 117.4 19.3 288 35-356 283-585 (840)
60 KOG1173 Anaphase-promoting com 99.5 2.8E-12 6E-17 119.9 19.3 281 26-369 242-530 (611)
61 PRK15363 pathogenicity island 99.5 2.2E-12 4.8E-17 103.4 15.2 108 199-320 25-133 (157)
62 TIGR03302 OM_YfiO outer membra 99.5 5.7E-12 1.2E-16 111.3 18.1 173 126-321 39-234 (235)
63 TIGR00540 hemY_coli hemY prote 99.4 1.3E-10 2.8E-15 111.1 28.1 280 34-353 90-394 (409)
64 PLN03077 Protein ECB2; Provisi 99.4 4.6E-11 1E-15 124.8 27.1 250 26-316 352-651 (857)
65 PLN02789 farnesyltranstransfer 99.4 1.7E-11 3.7E-16 112.1 20.6 147 176-339 73-229 (320)
66 PRK14574 hmsH outer membrane p 99.4 4.2E-10 9E-15 114.8 32.4 189 174-368 327-523 (822)
67 TIGR00540 hemY_coli hemY prote 99.4 7.7E-11 1.7E-15 112.7 25.8 252 32-319 122-399 (409)
68 KOG2002 TPR-containing nuclear 99.4 5.5E-11 1.2E-15 117.4 24.9 173 176-362 235-413 (1018)
69 KOG0553 TPR repeat-containing 99.4 4.2E-12 9.2E-17 110.7 14.9 128 175-316 82-212 (304)
70 PF04733 Coatomer_E: Coatomer 99.4 8.9E-12 1.9E-16 112.6 17.4 262 33-362 6-269 (290)
71 KOG1125 TPR repeat-containing 99.4 7.5E-12 1.6E-16 117.4 16.9 196 131-355 296-525 (579)
72 KOG2076 RNA polymerase III tra 99.4 2E-10 4.2E-15 112.9 27.1 288 28-356 139-510 (895)
73 PRK10747 putative protoheme IX 99.4 2.1E-10 4.6E-15 109.1 26.4 245 35-320 125-391 (398)
74 KOG0548 Molecular co-chaperone 99.4 4.7E-11 1E-15 111.3 20.8 55 33-93 229-283 (539)
75 PLN03077 Protein ECB2; Provisi 99.4 3.7E-10 8.1E-15 118.1 29.7 283 28-355 424-717 (857)
76 COG5010 TadD Flp pilus assembl 99.4 8.5E-11 1.8E-15 100.8 20.0 148 178-342 70-217 (257)
77 KOG0550 Molecular chaperone (D 99.4 7.1E-12 1.5E-16 113.1 13.0 253 25-322 80-353 (486)
78 PRK15179 Vi polysaccharide bio 99.4 9.5E-11 2.1E-15 117.3 22.1 151 188-357 66-216 (694)
79 COG2956 Predicted N-acetylgluc 99.4 5.1E-10 1.1E-14 98.4 22.8 232 74-353 42-273 (389)
80 KOG1130 Predicted G-alpha GTPa 99.4 2.5E-11 5.4E-16 109.6 15.0 249 34-320 23-305 (639)
81 KOG4162 Predicted calmodulin-b 99.3 2.3E-10 5E-15 110.7 20.9 268 18-323 467-787 (799)
82 PRK10370 formate-dependent nit 99.3 6E-10 1.3E-14 95.3 21.3 151 180-360 22-175 (198)
83 KOG0553 TPR repeat-containing 99.3 3.6E-11 7.9E-16 104.9 12.6 112 211-338 83-194 (304)
84 cd05804 StaR_like StaR_like; a 99.3 6.1E-10 1.3E-14 104.5 21.3 100 178-287 118-217 (355)
85 KOG0624 dsRNA-activated protei 99.3 3.1E-10 6.8E-15 100.4 17.3 176 175-362 73-256 (504)
86 KOG2076 RNA polymerase III tra 99.3 5.8E-10 1.3E-14 109.6 20.9 150 175-338 140-291 (895)
87 PF13414 TPR_11: TPR repeat; P 99.3 1.8E-11 3.9E-16 86.1 7.8 66 256-321 3-69 (69)
88 PLN03088 SGT1, suppressor of 99.3 1.6E-10 3.4E-15 108.1 16.0 111 179-303 7-117 (356)
89 COG5010 TadD Flp pilus assembl 99.3 2.8E-10 6E-15 97.6 15.9 127 176-316 102-228 (257)
90 cd05804 StaR_like StaR_like; a 99.3 6.1E-10 1.3E-14 104.5 19.5 164 179-355 48-212 (355)
91 PRK14574 hmsH outer membrane p 99.3 3.3E-09 7.2E-14 108.3 25.8 206 73-323 298-517 (822)
92 PLN03088 SGT1, suppressor of 99.3 2.1E-10 4.6E-15 107.2 16.0 110 212-337 5-114 (356)
93 KOG4234 TPR repeat-containing 99.2 2E-10 4.4E-15 94.3 13.4 136 213-359 99-234 (271)
94 KOG1128 Uncharacterized conser 99.2 9.7E-10 2.1E-14 105.9 19.3 135 174-322 485-619 (777)
95 PF13525 YfiO: Outer membrane 99.2 1.2E-09 2.6E-14 94.0 17.9 159 175-343 6-194 (203)
96 KOG1174 Anaphase-promoting com 99.2 8.2E-09 1.8E-13 93.6 23.3 255 34-323 49-401 (564)
97 PRK02603 photosystem I assembl 99.2 7.3E-10 1.6E-14 92.9 15.8 107 207-323 33-153 (172)
98 KOG1174 Anaphase-promoting com 99.2 4.5E-09 9.7E-14 95.3 21.2 242 62-338 191-482 (564)
99 PF09976 TPR_21: Tetratricopep 99.2 1.8E-09 4E-14 87.8 17.3 123 183-317 20-145 (145)
100 TIGR02795 tol_pal_ybgF tol-pal 99.2 5E-10 1.1E-14 87.4 13.3 105 209-323 2-109 (119)
101 PF12569 NARP1: NMDA receptor- 99.2 2.3E-08 4.9E-13 97.0 27.0 61 36-101 12-72 (517)
102 KOG0495 HAT repeat protein [RN 99.2 2.9E-08 6.3E-13 94.8 25.9 251 34-323 522-786 (913)
103 TIGR02552 LcrH_SycD type III s 99.2 1.1E-09 2.3E-14 87.9 14.4 117 230-364 4-120 (135)
104 TIGR02795 tol_pal_ybgF tol-pal 99.2 7.3E-10 1.6E-14 86.5 12.8 109 175-294 3-114 (119)
105 KOG0543 FKBP-type peptidyl-pro 99.2 6.3E-10 1.4E-14 101.2 13.8 84 256-342 257-340 (397)
106 PRK15363 pathogenicity island 99.2 1.3E-09 2.7E-14 87.6 14.0 98 175-286 36-133 (157)
107 COG4783 Putative Zn-dependent 99.2 4.7E-09 1E-13 97.3 19.5 136 174-323 306-441 (484)
108 CHL00033 ycf3 photosystem I as 99.2 1.6E-09 3.5E-14 90.5 15.2 126 188-323 13-153 (168)
109 PRK10866 outer membrane biogen 99.2 1.3E-08 2.9E-13 89.8 21.6 167 176-355 34-238 (243)
110 PRK14720 transcript cleavage f 99.2 1.1E-08 2.4E-13 103.7 23.6 149 175-356 117-285 (906)
111 KOG3060 Uncharacterized conser 99.2 2.2E-08 4.9E-13 85.5 21.7 135 175-323 87-224 (289)
112 cd00189 TPR Tetratricopeptide 99.1 1.1E-09 2.4E-14 80.7 11.6 99 211-322 2-100 (100)
113 PF14938 SNAP: Soluble NSF att 99.1 5.7E-09 1.2E-13 94.6 17.8 197 131-352 46-257 (282)
114 COG4235 Cytochrome c biogenesi 99.1 4.3E-09 9.4E-14 92.6 16.1 122 189-324 137-261 (287)
115 PF04733 Coatomer_E: Coatomer 99.1 3.1E-09 6.7E-14 96.2 15.7 228 31-323 38-269 (290)
116 PRK10153 DNA-binding transcrip 99.1 1.2E-08 2.5E-13 99.5 19.3 136 175-323 340-486 (517)
117 PF12569 NARP1: NMDA receptor- 99.1 3.4E-08 7.4E-13 95.8 21.8 208 126-359 10-292 (517)
118 PF13432 TPR_16: Tetratricopep 99.1 6.7E-10 1.4E-14 77.0 7.5 63 261-323 2-64 (65)
119 cd00189 TPR Tetratricopeptide 99.1 2.9E-09 6.2E-14 78.3 11.3 99 176-288 2-100 (100)
120 KOG4162 Predicted calmodulin-b 99.1 7.4E-07 1.6E-11 86.9 30.1 294 37-358 332-783 (799)
121 PF12895 Apc3: Anaphase-promot 99.0 1.5E-09 3.4E-14 79.4 8.7 84 221-316 1-84 (84)
122 KOG0495 HAT repeat protein [RN 99.0 2.6E-07 5.6E-12 88.5 25.3 262 35-362 591-884 (913)
123 PRK14720 transcript cleavage f 99.0 2E-08 4.3E-13 101.9 18.2 141 175-320 32-179 (906)
124 PRK02603 photosystem I assembl 99.0 2E-08 4.3E-13 84.2 15.6 102 174-289 35-153 (172)
125 KOG1128 Uncharacterized conser 99.0 1.2E-08 2.6E-13 98.6 14.8 206 119-342 397-602 (777)
126 PF13414 TPR_11: TPR repeat; P 99.0 1.9E-09 4.2E-14 75.6 7.1 67 208-287 2-69 (69)
127 CHL00033 ycf3 photosystem I as 99.0 2.7E-08 6E-13 83.0 14.5 110 174-290 35-154 (168)
128 KOG1156 N-terminal acetyltrans 98.9 3E-08 6.6E-13 94.6 16.0 161 178-357 11-171 (700)
129 PRK15331 chaperone protein Sic 98.9 1.3E-08 2.7E-13 82.3 11.4 108 200-322 29-136 (165)
130 PF12895 Apc3: Anaphase-promot 98.9 3.8E-09 8.2E-14 77.3 7.6 82 187-282 2-84 (84)
131 PF13432 TPR_16: Tetratricopep 98.9 5E-09 1.1E-13 72.6 7.7 65 213-290 1-65 (65)
132 KOG2376 Signal recognition par 98.9 2.7E-06 5.9E-11 80.8 28.0 185 24-238 42-253 (652)
133 KOG3060 Uncharacterized conser 98.9 9.1E-07 2E-11 75.8 22.4 141 179-336 57-197 (289)
134 COG3071 HemY Uncharacterized e 98.9 3.4E-06 7.3E-11 76.7 27.3 252 39-340 95-374 (400)
135 PRK10803 tol-pal system protei 98.9 3E-08 6.6E-13 88.2 14.2 94 186-290 155-251 (263)
136 PF12688 TPR_5: Tetratrico pep 98.9 4.2E-08 9E-13 76.3 13.1 99 210-318 2-103 (120)
137 KOG3081 Vesicle coat complex C 98.9 2.1E-06 4.5E-11 74.2 23.6 263 32-361 12-274 (299)
138 KOG0543 FKBP-type peptidyl-pro 98.9 5.3E-08 1.1E-12 88.8 14.7 133 177-322 211-358 (397)
139 PRK10803 tol-pal system protei 98.9 9.3E-08 2E-12 85.1 15.7 106 208-323 141-250 (263)
140 KOG4340 Uncharacterized conser 98.9 2.2E-07 4.8E-12 81.2 16.7 276 33-337 15-320 (459)
141 PF09976 TPR_21: Tetratricopep 98.8 2.5E-07 5.3E-12 75.2 15.8 94 175-283 49-145 (145)
142 KOG1156 N-terminal acetyltrans 98.8 9.8E-07 2.1E-11 84.6 21.6 242 32-323 11-252 (700)
143 PF14559 TPR_19: Tetratricopep 98.8 1.4E-08 3.1E-13 70.9 7.2 58 266-323 1-58 (68)
144 KOG3785 Uncharacterized conser 98.8 8.9E-07 1.9E-11 79.2 19.8 283 34-357 28-351 (557)
145 PF13371 TPR_9: Tetratricopept 98.8 2.9E-08 6.3E-13 70.4 8.6 61 263-323 2-62 (73)
146 COG4105 ComL DNA uptake lipopr 98.8 1.6E-06 3.4E-11 75.1 20.1 175 175-362 35-237 (254)
147 COG4783 Putative Zn-dependent 98.8 3.2E-07 7E-12 85.4 16.9 120 207-342 304-423 (484)
148 PRK04841 transcriptional regul 98.8 1.4E-06 3.1E-11 91.9 24.3 262 37-323 461-764 (903)
149 PLN03098 LPA1 LOW PSII ACCUMUL 98.8 3.4E-08 7.4E-13 92.0 10.3 72 248-320 68-142 (453)
150 PRK04841 transcriptional regul 98.8 7.1E-06 1.5E-10 86.7 29.3 278 34-355 347-638 (903)
151 PF09295 ChAPs: ChAPs (Chs5p-A 98.8 2.4E-07 5.2E-12 86.7 15.7 122 179-317 174-295 (395)
152 PRK11906 transcriptional regul 98.7 4.1E-07 8.9E-12 85.0 16.0 132 178-323 259-405 (458)
153 PF13424 TPR_12: Tetratricopep 98.7 3.8E-08 8.2E-13 70.8 6.8 67 252-319 2-75 (78)
154 PF12688 TPR_5: Tetratrico pep 98.7 2.7E-07 5.8E-12 71.8 11.6 99 175-284 2-103 (120)
155 PF13512 TPR_18: Tetratricopep 98.7 4.6E-07 1E-11 71.7 13.0 107 207-323 8-132 (142)
156 KOG1130 Predicted G-alpha GTPa 98.7 1.5E-07 3.2E-12 85.7 11.4 139 174-319 195-344 (639)
157 KOG1127 TPR repeat-containing 98.7 2.7E-07 5.9E-12 92.0 14.1 145 177-336 495-639 (1238)
158 PF14938 SNAP: Soluble NSF att 98.7 6.2E-07 1.3E-11 81.3 15.7 138 176-321 37-186 (282)
159 PF13512 TPR_18: Tetratricopep 98.7 4.4E-07 9.5E-12 71.8 12.6 108 175-292 11-135 (142)
160 COG3071 HemY Uncharacterized e 98.7 2E-05 4.3E-10 71.8 24.6 129 174-320 263-391 (400)
161 PF13424 TPR_12: Tetratricopep 98.7 1.4E-07 3.1E-12 67.7 9.1 71 209-285 5-75 (78)
162 PRK10866 outer membrane biogen 98.7 2E-06 4.3E-11 76.0 18.0 168 130-316 42-238 (243)
163 KOG1070 rRNA processing protei 98.7 5.7E-06 1.2E-10 85.5 22.5 229 61-340 1453-1683(1710)
164 PF13525 YfiO: Outer membrane 98.6 1.1E-06 2.4E-11 75.6 14.4 108 207-324 3-124 (203)
165 KOG3785 Uncharacterized conser 98.6 3.1E-06 6.7E-11 75.8 17.1 163 179-344 62-237 (557)
166 PRK11906 transcriptional regul 98.6 5.6E-06 1.2E-10 77.6 19.0 117 188-318 318-435 (458)
167 KOG1127 TPR repeat-containing 98.6 4.9E-06 1.1E-10 83.4 19.2 262 18-315 585-909 (1238)
168 KOG4555 TPR repeat-containing 98.6 1.6E-06 3.5E-11 66.7 12.4 94 216-322 50-147 (175)
169 COG1729 Uncharacterized protei 98.6 2.1E-06 4.5E-11 75.0 14.5 107 178-294 145-253 (262)
170 KOG3081 Vesicle coat complex C 98.6 1.5E-05 3.3E-10 69.0 19.4 232 26-323 39-275 (299)
171 PF13371 TPR_9: Tetratricopept 98.6 4.1E-07 8.8E-12 64.4 8.4 70 215-297 1-70 (73)
172 KOG4340 Uncharacterized conser 98.6 1.1E-06 2.5E-11 76.9 11.9 191 74-319 17-207 (459)
173 COG1729 Uncharacterized protei 98.5 2.8E-06 6.2E-11 74.1 14.0 102 212-323 144-248 (262)
174 PF14559 TPR_19: Tetratricopep 98.5 3.7E-07 8E-12 63.6 6.8 67 219-298 1-67 (68)
175 PRK15331 chaperone protein Sic 98.5 3.5E-06 7.6E-11 68.2 13.0 101 175-290 38-138 (165)
176 KOG4648 Uncharacterized conser 98.5 3.7E-07 8E-12 81.3 7.4 98 213-323 101-198 (536)
177 COG4700 Uncharacterized protei 98.5 1.1E-05 2.4E-10 66.1 15.1 131 176-318 91-221 (251)
178 COG4235 Cytochrome c biogenesi 98.5 4.3E-06 9.3E-11 73.9 13.3 101 176-290 158-261 (287)
179 PRK10153 DNA-binding transcrip 98.4 1.7E-05 3.7E-10 77.6 18.3 140 202-361 331-485 (517)
180 COG4785 NlpI Lipoprotein NlpI, 98.4 3.5E-06 7.6E-11 70.6 11.2 103 174-290 65-167 (297)
181 KOG4648 Uncharacterized conser 98.4 3.2E-06 6.9E-11 75.5 10.6 102 179-294 102-203 (536)
182 KOG4234 TPR repeat-containing 98.4 5E-06 1.1E-10 68.8 10.7 103 179-294 100-206 (271)
183 KOG4555 TPR repeat-containing 98.3 4E-05 8.8E-10 59.1 14.2 99 180-288 49-147 (175)
184 COG0457 NrfG FOG: TPR repeat [ 98.3 0.00017 3.6E-09 61.5 20.2 150 175-338 96-247 (291)
185 PLN03098 LPA1 LOW PSII ACCUMUL 98.3 7.1E-06 1.5E-10 76.8 11.6 63 174-237 75-140 (453)
186 KOG1941 Acetylcholine receptor 98.3 9.7E-05 2.1E-09 66.7 17.9 144 175-321 123-277 (518)
187 KOG0545 Aryl-hydrocarbon recep 98.3 3.4E-05 7.3E-10 66.0 14.1 113 210-323 179-297 (329)
188 PF13431 TPR_17: Tetratricopep 98.3 8.7E-07 1.9E-11 52.4 3.1 34 278-311 1-34 (34)
189 COG4785 NlpI Lipoprotein NlpI, 98.2 8.6E-06 1.9E-10 68.3 9.4 102 209-323 65-166 (297)
190 PF10300 DUF3808: Protein of u 98.2 0.00014 3.1E-09 70.5 18.9 125 187-321 246-378 (468)
191 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 5.1E-05 1.1E-09 71.3 15.0 111 213-342 173-283 (395)
192 COG4700 Uncharacterized protei 98.2 0.00026 5.6E-09 58.3 16.2 125 185-323 67-193 (251)
193 KOG1586 Protein required for f 98.2 0.001 2.3E-08 56.7 20.3 142 179-328 78-233 (288)
194 COG2976 Uncharacterized protei 98.1 0.00052 1.1E-08 57.0 17.8 129 192-331 70-200 (207)
195 KOG2047 mRNA splicing factor [ 98.1 0.0027 5.9E-08 61.6 24.8 182 174-355 387-576 (835)
196 KOG1941 Acetylcholine receptor 98.1 0.00044 9.5E-09 62.6 17.7 200 118-338 120-342 (518)
197 COG3118 Thioredoxin domain-con 98.1 0.00067 1.5E-08 60.0 18.4 148 180-342 140-287 (304)
198 PF13428 TPR_14: Tetratricopep 98.0 1.4E-05 3E-10 50.4 5.4 41 258-298 3-43 (44)
199 PF06552 TOM20_plant: Plant sp 98.0 4.6E-05 9.9E-10 62.5 9.2 86 225-323 7-113 (186)
200 KOG4642 Chaperone-dependent E3 98.0 1.2E-05 2.6E-10 68.4 5.8 92 215-319 16-107 (284)
201 KOG0551 Hsp90 co-chaperone CNS 98.0 0.0001 2.2E-09 65.8 11.7 102 212-322 84-185 (390)
202 KOG2047 mRNA splicing factor [ 98.0 0.001 2.2E-08 64.5 19.0 183 127-322 354-582 (835)
203 COG0457 NrfG FOG: TPR repeat [ 98.0 0.0026 5.6E-08 54.0 20.3 149 175-340 60-215 (291)
204 KOG3617 WD40 and TPR repeat-co 98.0 0.00023 4.9E-09 70.5 14.5 131 174-316 938-1106(1416)
205 PF00515 TPR_1: Tetratricopept 97.9 1.7E-05 3.6E-10 46.8 4.1 31 258-288 3-33 (34)
206 PF06552 TOM20_plant: Plant sp 97.9 6.7E-05 1.5E-09 61.5 8.9 109 190-319 7-136 (186)
207 COG3898 Uncharacterized membra 97.9 0.017 3.6E-07 53.2 27.5 254 39-353 131-387 (531)
208 COG4105 ComL DNA uptake lipopr 97.9 0.0028 6E-08 55.2 18.2 185 31-235 37-230 (254)
209 PF00515 TPR_1: Tetratricopept 97.9 3.5E-05 7.5E-10 45.4 4.7 33 290-322 1-33 (34)
210 PF07719 TPR_2: Tetratricopept 97.9 3.9E-05 8.4E-10 45.1 4.8 32 258-289 3-34 (34)
211 KOG1915 Cell cycle control pro 97.9 0.016 3.4E-07 54.7 23.8 244 24-320 318-586 (677)
212 COG2976 Uncharacterized protei 97.8 0.00027 5.9E-09 58.6 11.0 99 177-290 92-193 (207)
213 KOG1070 rRNA processing protei 97.8 0.0056 1.2E-07 64.3 22.0 224 24-303 1454-1683(1710)
214 PF03704 BTAD: Bacterial trans 97.8 0.0011 2.3E-08 53.7 14.1 64 256-319 62-125 (146)
215 PF10602 RPN7: 26S proteasome 97.8 0.002 4.4E-08 53.9 15.9 106 174-286 36-143 (177)
216 PF02259 FAT: FAT domain; Int 97.8 0.032 6.9E-07 52.0 27.1 148 175-322 147-341 (352)
217 PF13428 TPR_14: Tetratricopep 97.8 6.8E-05 1.5E-09 47.2 5.2 42 291-335 2-43 (44)
218 PF05843 Suf: Suppressor of fo 97.7 0.002 4.4E-08 58.3 15.9 134 176-323 3-140 (280)
219 KOG3617 WD40 and TPR repeat-co 97.7 0.0016 3.5E-08 64.8 15.8 119 174-318 858-995 (1416)
220 PF04184 ST7: ST7 protein; In 97.7 0.0021 4.5E-08 60.8 15.6 128 186-316 180-321 (539)
221 PF07719 TPR_2: Tetratricopept 97.7 0.00012 2.7E-09 42.9 5.0 34 290-323 1-34 (34)
222 KOG2053 Mitochondrial inherita 97.7 0.0016 3.5E-08 65.2 15.3 123 186-323 21-143 (932)
223 PF13281 DUF4071: Domain of un 97.6 0.0042 9.1E-08 57.7 16.8 135 175-323 180-338 (374)
224 KOG4642 Chaperone-dependent E3 97.6 0.00021 4.6E-09 61.0 7.4 92 180-285 16-107 (284)
225 KOG1586 Protein required for f 97.6 0.02 4.4E-07 49.1 19.0 101 216-323 80-187 (288)
226 KOG1915 Cell cycle control pro 97.6 0.012 2.6E-07 55.4 19.0 153 186-355 378-533 (677)
227 PF13431 TPR_17: Tetratricopep 97.6 6.2E-05 1.3E-09 44.4 2.9 34 196-230 1-34 (34)
228 KOG0376 Serine-threonine phosp 97.6 0.00015 3.2E-09 68.0 6.2 108 179-300 9-116 (476)
229 KOG2300 Uncharacterized conser 97.5 0.0095 2.1E-07 56.1 17.1 163 174-342 367-540 (629)
230 KOG2471 TPR repeat-containing 97.5 0.0009 2E-08 62.8 10.5 148 180-336 212-378 (696)
231 COG3898 Uncharacterized membra 97.5 0.07 1.5E-06 49.3 21.9 130 186-323 166-296 (531)
232 KOG2300 Uncharacterized conser 97.5 0.095 2.1E-06 49.7 23.0 133 175-320 324-475 (629)
233 KOG2610 Uncharacterized conser 97.5 0.0022 4.7E-08 57.7 11.9 126 181-316 110-235 (491)
234 PF03704 BTAD: Bacterial trans 97.4 0.0016 3.4E-08 52.7 10.1 109 132-241 18-128 (146)
235 KOG0376 Serine-threonine phosp 97.4 0.00025 5.5E-09 66.5 5.8 98 213-323 8-105 (476)
236 PF08631 SPO22: Meiosis protei 97.4 0.041 8.9E-07 49.8 19.9 136 186-321 5-152 (278)
237 PF13181 TPR_8: Tetratricopept 97.4 0.00032 7E-09 41.1 4.0 31 258-288 3-33 (34)
238 KOG2053 Mitochondrial inherita 97.3 0.0016 3.5E-08 65.3 10.3 102 220-338 20-121 (932)
239 KOG2471 TPR repeat-containing 97.3 0.00071 1.5E-08 63.5 6.7 127 175-302 241-381 (696)
240 KOG2610 Uncharacterized conser 97.2 0.015 3.3E-07 52.4 14.3 213 129-354 112-347 (491)
241 PF13281 DUF4071: Domain of un 97.2 0.12 2.7E-06 48.1 20.5 176 174-365 141-341 (374)
242 KOG0545 Aryl-hydrocarbon recep 97.1 0.013 2.9E-07 50.5 12.6 104 131-240 189-295 (329)
243 PF10345 Cohesin_load: Cohesin 97.1 0.37 8.1E-06 48.7 25.9 284 34-342 105-464 (608)
244 PF13176 TPR_7: Tetratricopept 97.1 0.0011 2.3E-08 39.6 4.3 31 211-241 1-31 (36)
245 PF13181 TPR_8: Tetratricopept 97.1 0.0012 2.7E-08 38.6 4.2 32 291-322 2-33 (34)
246 COG5159 RPN6 26S proteasome re 97.0 0.054 1.2E-06 47.9 15.7 222 31-285 6-235 (421)
247 KOG0551 Hsp90 co-chaperone CNS 97.0 0.004 8.6E-08 55.9 8.8 98 176-287 83-184 (390)
248 PF14561 TPR_20: Tetratricopep 97.0 0.007 1.5E-07 44.5 8.6 49 275-323 7-55 (90)
249 KOG1585 Protein required for f 97.0 0.032 7E-07 48.2 13.5 166 176-352 73-250 (308)
250 PRK10941 hypothetical protein; 97.0 0.016 3.4E-07 51.8 12.2 72 252-323 177-248 (269)
251 PF13174 TPR_6: Tetratricopept 97.0 0.0018 3.8E-08 37.5 4.2 31 292-322 2-32 (33)
252 PF13174 TPR_6: Tetratricopept 97.0 0.0016 3.4E-08 37.7 4.0 32 258-289 2-33 (33)
253 KOG0985 Vesicle coat protein c 96.9 0.47 1E-05 49.1 23.1 124 174-317 1104-1247(1666)
254 KOG1585 Protein required for f 96.9 0.23 5E-06 43.1 19.4 128 180-315 116-252 (308)
255 KOG1308 Hsp70-interacting prot 96.9 0.00044 9.6E-09 62.1 2.0 93 218-323 123-215 (377)
256 KOG2796 Uncharacterized conser 96.9 0.15 3.2E-06 44.8 16.8 135 74-241 184-318 (366)
257 PF13176 TPR_7: Tetratricopept 96.9 0.0018 4E-08 38.6 3.9 25 259-283 2-26 (36)
258 PF05843 Suf: Suppressor of fo 96.9 0.021 4.6E-07 51.7 12.5 100 211-323 3-103 (280)
259 PF04184 ST7: ST7 protein; In 96.7 0.048 1E-06 51.9 13.7 146 135-292 215-382 (539)
260 KOG4507 Uncharacterized conser 96.7 0.0051 1.1E-07 59.2 7.3 99 214-324 611-710 (886)
261 PF12968 DUF3856: Domain of Un 96.6 0.079 1.7E-06 40.5 11.6 103 216-319 16-129 (144)
262 PF09613 HrpB1_HrpK: Bacterial 96.5 0.061 1.3E-06 43.7 11.2 97 212-322 13-109 (160)
263 PF09986 DUF2225: Uncharacteri 96.5 0.081 1.8E-06 45.7 12.8 94 223-322 91-197 (214)
264 KOG1308 Hsp70-interacting prot 96.4 0.0015 3.3E-08 58.8 1.7 92 183-288 123-214 (377)
265 KOG4507 Uncharacterized conser 96.4 0.013 2.8E-07 56.5 7.9 104 185-301 618-721 (886)
266 PF12968 DUF3856: Domain of Un 96.4 0.11 2.3E-06 39.8 11.2 102 181-285 16-129 (144)
267 smart00028 TPR Tetratricopepti 96.4 0.0068 1.5E-07 34.0 4.1 30 259-288 4-33 (34)
268 PF04910 Tcf25: Transcriptiona 96.3 0.48 1E-05 44.5 17.7 126 188-318 24-167 (360)
269 smart00028 TPR Tetratricopepti 96.3 0.0075 1.6E-07 33.8 3.8 32 291-322 2-33 (34)
270 COG0790 FOG: TPR repeat, SEL1 96.3 0.49 1.1E-05 42.9 17.5 129 188-338 91-234 (292)
271 COG2909 MalT ATP-dependent tra 96.2 1.2 2.5E-05 45.7 20.7 289 33-354 365-684 (894)
272 PF04781 DUF627: Protein of un 96.2 0.049 1.1E-06 41.2 8.6 105 181-319 3-107 (111)
273 COG2909 MalT ATP-dependent tra 96.2 1.8 3.9E-05 44.4 26.0 170 179-357 463-646 (894)
274 COG4649 Uncharacterized protei 96.2 0.57 1.2E-05 38.6 16.1 126 184-319 68-196 (221)
275 PRK15180 Vi polysaccharide bio 96.2 0.027 5.9E-07 53.1 8.6 125 185-323 300-424 (831)
276 KOG1550 Extracellular protein 96.2 0.33 7.3E-06 48.4 17.0 145 174-340 244-409 (552)
277 PRK10941 hypothetical protein; 96.2 0.088 1.9E-06 47.1 11.6 68 173-241 180-247 (269)
278 PF10602 RPN7: 26S proteasome 96.2 0.19 4.1E-06 42.1 13.0 102 210-321 37-144 (177)
279 COG0790 FOG: TPR repeat, SEL1 96.1 0.93 2E-05 41.1 18.7 129 174-321 109-268 (292)
280 KOG1550 Extracellular protein 96.1 0.3 6.6E-06 48.7 16.1 152 189-358 227-393 (552)
281 PF10300 DUF3808: Protein of u 96.0 0.36 7.7E-06 47.1 15.9 181 26-241 185-379 (468)
282 KOG3824 Huntingtin interacting 96.0 0.029 6.3E-07 50.0 7.5 72 260-334 120-191 (472)
283 PF14853 Fis1_TPR_C: Fis1 C-te 96.0 0.042 9.2E-07 35.8 6.3 31 293-323 4-34 (53)
284 PF08631 SPO22: Meiosis protei 95.9 0.47 1E-05 42.9 15.2 132 219-359 3-152 (278)
285 PF14853 Fis1_TPR_C: Fis1 C-te 95.8 0.056 1.2E-06 35.2 6.5 41 258-298 3-43 (53)
286 PF13374 TPR_10: Tetratricopep 95.8 0.03 6.4E-07 34.1 4.9 32 210-241 3-34 (42)
287 PF15015 NYD-SP12_N: Spermatog 95.7 0.15 3.3E-06 47.5 11.2 101 216-316 183-288 (569)
288 KOG1463 26S proteasome regulat 95.7 1.6 3.5E-05 39.8 21.7 221 32-285 8-238 (411)
289 PF09613 HrpB1_HrpK: Bacterial 95.7 0.19 4.2E-06 40.8 10.5 118 177-311 13-130 (160)
290 PF12862 Apc5: Anaphase-promot 95.7 0.14 3E-06 37.9 9.1 75 265-339 7-90 (94)
291 PF09986 DUF2225: Uncharacteri 95.6 0.11 2.5E-06 44.8 9.7 112 186-297 89-207 (214)
292 KOG2041 WD40 repeat protein [G 95.6 0.97 2.1E-05 45.0 16.6 92 34-146 669-760 (1189)
293 COG4649 Uncharacterized protei 95.6 1.1 2.3E-05 37.1 15.8 141 131-302 69-212 (221)
294 KOG3616 Selective LIM binding 95.6 1.8 4E-05 43.5 18.4 35 256-290 995-1029(1636)
295 PF13374 TPR_10: Tetratricopep 95.5 0.034 7.4E-07 33.8 4.5 29 291-319 3-31 (42)
296 COG4976 Predicted methyltransf 95.5 0.025 5.4E-07 48.4 4.9 59 265-323 4-62 (287)
297 COG3118 Thioredoxin domain-con 95.4 0.46 9.9E-06 42.5 12.7 127 213-357 138-265 (304)
298 PF10345 Cohesin_load: Cohesin 95.4 3.5 7.6E-05 41.8 23.3 171 135-318 25-207 (608)
299 TIGR02561 HrpB1_HrpK type III 95.3 0.31 6.7E-06 39.0 10.2 45 262-306 50-94 (153)
300 KOG3616 Selective LIM binding 95.3 0.4 8.6E-06 48.0 12.8 117 178-317 769-909 (1636)
301 PF07079 DUF1347: Protein of u 95.2 2.1 4.6E-05 40.7 16.9 148 163-316 359-521 (549)
302 PF12862 Apc5: Anaphase-promot 95.2 0.16 3.4E-06 37.6 7.9 64 218-286 7-71 (94)
303 COG3629 DnrI DNA-binding trans 95.0 0.55 1.2E-05 42.1 12.2 67 172-239 151-217 (280)
304 KOG1258 mRNA processing protei 94.8 4.5 9.8E-05 39.7 18.7 150 182-344 305-457 (577)
305 KOG3824 Huntingtin interacting 94.7 0.12 2.6E-06 46.2 7.1 61 177-238 119-179 (472)
306 PF04910 Tcf25: Transcriptiona 94.7 0.93 2E-05 42.6 13.5 138 174-322 40-225 (360)
307 KOG1839 Uncharacterized protei 94.6 0.76 1.7E-05 48.9 13.5 136 180-321 938-1088(1236)
308 PF12854 PPR_1: PPR repeat 94.5 0.082 1.8E-06 30.9 3.8 30 287-316 4-33 (34)
309 TIGR02561 HrpB1_HrpK type III 94.4 0.53 1.2E-05 37.7 9.4 80 180-273 16-95 (153)
310 COG3914 Spy Predicted O-linked 94.4 2.5 5.4E-05 41.4 15.5 66 258-323 103-175 (620)
311 PF10579 Rapsyn_N: Rapsyn N-te 94.4 0.49 1.1E-05 33.4 8.1 64 256-319 6-72 (80)
312 COG4976 Predicted methyltransf 94.4 0.082 1.8E-06 45.3 5.0 61 217-290 3-63 (287)
313 PF02259 FAT: FAT domain; Int 94.3 4.4 9.5E-05 37.6 24.1 120 207-338 144-303 (352)
314 PF13041 PPR_2: PPR repeat fam 94.3 0.24 5.2E-06 31.6 6.2 45 175-219 4-48 (50)
315 KOG0985 Vesicle coat protein c 94.1 1.5 3.3E-05 45.6 14.0 74 257-335 1105-1178(1666)
316 KOG4814 Uncharacterized conser 94.0 0.75 1.6E-05 45.3 11.3 98 215-319 360-457 (872)
317 PF14561 TPR_20: Tetratricopep 93.8 0.77 1.7E-05 33.6 8.8 46 193-239 7-52 (90)
318 COG2912 Uncharacterized conser 93.8 0.71 1.5E-05 40.9 9.9 73 251-323 176-248 (269)
319 KOG3364 Membrane protein invol 93.7 0.86 1.9E-05 35.8 9.1 79 256-337 32-115 (149)
320 PF13041 PPR_2: PPR repeat fam 93.6 0.32 6.9E-06 31.0 5.8 35 289-323 2-36 (50)
321 PF04053 Coatomer_WDAD: Coatom 93.5 0.72 1.6E-05 44.5 10.4 101 184-316 328-428 (443)
322 PF07079 DUF1347: Protein of u 93.4 2.6 5.7E-05 40.1 13.4 129 176-319 8-157 (549)
323 PF11817 Foie-gras_1: Foie gra 93.4 3.4 7.5E-05 36.5 13.9 85 226-317 155-245 (247)
324 PF07721 TPR_4: Tetratricopept 93.2 0.14 3E-06 27.8 3.0 23 211-233 3-25 (26)
325 KOG1464 COP9 signalosome, subu 93.0 3.4 7.5E-05 36.6 12.7 215 79-320 39-261 (440)
326 KOG1497 COP9 signalosome, subu 92.6 4.5 9.8E-05 36.7 13.0 108 171-285 100-213 (399)
327 PF04781 DUF627: Protein of un 92.5 0.97 2.1E-05 34.3 7.6 72 262-336 2-87 (111)
328 PF10516 SHNi-TPR: SHNi-TPR; 92.4 0.26 5.6E-06 29.6 3.7 28 258-285 3-30 (38)
329 KOG2396 HAT (Half-A-TPR) repea 92.3 4.4 9.5E-05 39.1 13.3 65 259-323 108-173 (568)
330 KOG1538 Uncharacterized conser 92.3 13 0.00029 37.1 17.2 16 181-196 710-725 (1081)
331 COG3947 Response regulator con 92.3 0.85 1.8E-05 40.7 8.1 64 174-238 279-342 (361)
332 KOG3807 Predicted membrane pro 92.1 3.9 8.4E-05 37.4 12.1 124 188-314 198-335 (556)
333 PF10373 EST1_DNA_bind: Est1 D 92.1 0.56 1.2E-05 42.1 7.2 62 275-339 1-62 (278)
334 KOG0687 26S proteasome regulat 92.0 9.6 0.00021 34.8 18.1 103 174-286 104-211 (393)
335 COG5159 RPN6 26S proteasome re 91.9 4.9 0.00011 36.0 12.3 133 179-319 8-154 (421)
336 PF07721 TPR_4: Tetratricopept 91.9 0.22 4.8E-06 27.0 2.7 22 292-313 3-24 (26)
337 PF11207 DUF2989: Protein of u 91.7 3 6.4E-05 35.4 10.4 80 188-277 120-199 (203)
338 PF08424 NRDE-2: NRDE-2, neces 91.7 7 0.00015 36.1 14.1 120 190-320 47-184 (321)
339 KOG4814 Uncharacterized conser 91.6 16 0.00035 36.5 21.5 98 175-285 355-457 (872)
340 KOG3364 Membrane protein invol 91.6 3.7 8E-05 32.4 10.0 74 209-293 32-108 (149)
341 PF07720 TPR_3: Tetratricopept 91.6 0.68 1.5E-05 27.4 4.8 30 259-288 4-35 (36)
342 PF12854 PPR_1: PPR repeat 91.6 0.36 7.8E-06 28.1 3.6 30 62-93 4-33 (34)
343 KOG3783 Uncharacterized conser 91.5 15 0.00032 35.9 17.2 188 169-359 298-521 (546)
344 KOG0530 Protein farnesyltransf 91.4 8.5 0.00018 34.1 13.1 137 186-339 90-233 (318)
345 COG3629 DnrI DNA-binding trans 91.3 1.4 3E-05 39.6 8.6 64 256-319 153-216 (280)
346 PF08424 NRDE-2: NRDE-2, neces 91.1 11 0.00024 34.8 14.8 111 195-319 6-131 (321)
347 KOG1839 Uncharacterized protei 91.1 1.6 3.4E-05 46.7 9.9 140 174-318 973-1127(1236)
348 KOG2581 26S proteasome regulat 91.1 11 0.00024 35.4 14.2 106 175-289 170-280 (493)
349 PF10255 Paf67: RNA polymerase 90.7 1.3 2.7E-05 42.0 8.1 62 176-237 124-192 (404)
350 PF04053 Coatomer_WDAD: Coatom 90.5 5.1 0.00011 38.7 12.4 105 177-319 298-402 (443)
351 COG2912 Uncharacterized conser 90.5 2.7 5.8E-05 37.3 9.5 67 174-241 181-247 (269)
352 KOG2041 WD40 repeat protein [G 90.4 5.8 0.00012 39.9 12.3 65 251-315 791-877 (1189)
353 KOG4422 Uncharacterized conser 90.2 17 0.00037 34.6 22.2 73 10-87 100-172 (625)
354 KOG1538 Uncharacterized conser 90.1 5 0.00011 39.9 11.6 15 128-142 711-725 (1081)
355 PF10579 Rapsyn_N: Rapsyn N-te 90.1 3.1 6.7E-05 29.4 7.6 60 180-240 12-74 (80)
356 KOG0546 HSP90 co-chaperone CPR 89.7 0.71 1.5E-05 42.3 5.4 68 256-323 275-342 (372)
357 PRK13184 pknD serine/threonine 89.5 0.98 2.1E-05 47.5 7.0 127 180-322 481-623 (932)
358 KOG1310 WD40 repeat protein [G 89.4 1.5 3.2E-05 42.4 7.4 89 221-322 386-477 (758)
359 PF10516 SHNi-TPR: SHNi-TPR; 89.3 0.85 1.8E-05 27.4 3.8 30 211-240 3-32 (38)
360 KOG2396 HAT (Half-A-TPR) repea 88.5 3 6.6E-05 40.1 8.7 85 195-293 92-177 (568)
361 PRK11619 lytic murein transgly 88.4 32 0.00069 35.2 22.4 121 184-318 251-374 (644)
362 PF01535 PPR: PPR repeat; Int 88.2 0.89 1.9E-05 25.2 3.4 27 177-203 3-29 (31)
363 PF09670 Cas_Cas02710: CRISPR- 88.2 20 0.00042 34.0 14.2 59 179-237 136-197 (379)
364 KOG2581 26S proteasome regulat 88.0 24 0.00052 33.3 14.4 133 184-323 136-280 (493)
365 TIGR03504 FimV_Cterm FimV C-te 87.8 1.7 3.6E-05 27.1 4.5 25 294-318 3-27 (44)
366 PF10373 EST1_DNA_bind: Est1 D 87.7 2.7 5.8E-05 37.6 8.0 62 228-302 1-62 (278)
367 TIGR03504 FimV_Cterm FimV C-te 87.4 1.3 2.7E-05 27.6 3.9 26 178-203 3-28 (44)
368 PF10255 Paf67: RNA polymerase 87.2 0.98 2.1E-05 42.8 4.8 69 211-284 124-192 (404)
369 PF11207 DUF2989: Protein of u 86.6 3.5 7.6E-05 34.9 7.3 54 175-229 142-198 (203)
370 PF01535 PPR: PPR repeat; Int 86.5 1.1 2.5E-05 24.7 3.2 28 292-319 2-29 (31)
371 PF07720 TPR_3: Tetratricopept 86.3 3.1 6.7E-05 24.6 5.0 32 291-322 2-35 (36)
372 KOG0686 COP9 signalosome, subu 86.2 31 0.00066 32.7 18.2 107 171-283 147-256 (466)
373 PF15015 NYD-SP12_N: Spermatog 86.2 5.3 0.00011 37.7 8.8 104 131-237 187-290 (569)
374 KOG1310 WD40 repeat protein [G 85.9 5.2 0.00011 38.9 8.8 90 187-290 387-479 (758)
375 PRK15180 Vi polysaccharide bio 85.8 4.4 9.5E-05 38.9 8.2 99 178-290 327-425 (831)
376 TIGR00756 PPR pentatricopeptid 85.6 1.8 3.9E-05 24.4 3.9 28 177-204 3-30 (35)
377 KOG0890 Protein kinase of the 85.6 11 0.00025 43.1 12.3 144 174-321 1670-1835(2382)
378 KOG0276 Vesicle coat complex C 85.6 14 0.0003 36.7 11.5 58 259-316 669-747 (794)
379 KOG2168 Cullins [Cell cycle co 85.2 50 0.0011 34.3 15.7 20 34-53 474-493 (835)
380 COG4455 ImpE Protein of avirul 84.7 5.1 0.00011 34.5 7.3 59 266-324 11-69 (273)
381 PF06957 COPI_C: Coatomer (COP 83.9 38 0.00082 32.5 13.6 25 181-205 307-331 (422)
382 PF11817 Foie-gras_1: Foie gra 83.6 11 0.00024 33.3 9.6 67 210-283 179-245 (247)
383 KOG0890 Protein kinase of the 83.5 97 0.0021 36.2 24.2 113 207-337 1668-1799(2382)
384 TIGR00756 PPR pentatricopeptid 83.3 2.7 5.9E-05 23.6 3.9 29 292-320 2-30 (35)
385 smart00299 CLH Clathrin heavy 83.3 20 0.00044 28.2 12.8 107 182-315 15-121 (140)
386 cd02682 MIT_AAA_Arch MIT: doma 82.8 7.3 0.00016 27.4 6.3 34 259-292 9-49 (75)
387 COG1747 Uncharacterized N-term 82.5 47 0.001 32.5 13.4 140 176-323 101-292 (711)
388 KOG4151 Myosin assembly protei 82.1 4.9 0.00011 40.8 7.2 114 216-338 60-175 (748)
389 smart00386 HAT HAT (Half-A-TPR 82.0 3.8 8.3E-05 22.6 4.2 28 270-297 1-28 (33)
390 PF13812 PPR_3: Pentatricopept 81.6 3.6 7.7E-05 23.2 4.0 27 177-203 4-30 (34)
391 PF14863 Alkyl_sulf_dimr: Alky 81.0 14 0.00029 29.6 8.2 49 258-306 72-120 (141)
392 KOG0276 Vesicle coat complex C 80.2 11 0.00023 37.4 8.5 50 182-237 645-694 (794)
393 KOG0530 Protein farnesyltransf 80.0 44 0.00094 29.8 13.1 114 175-302 113-233 (318)
394 KOG1258 mRNA processing protei 79.7 68 0.0015 31.9 19.6 136 175-323 332-474 (577)
395 PF04190 DUF410: Protein of un 79.6 38 0.00082 30.2 11.6 130 175-316 11-147 (260)
396 PF13812 PPR_3: Pentatricopept 78.9 6.9 0.00015 21.9 4.6 28 292-319 3-30 (34)
397 PF06957 COPI_C: Coatomer (COP 78.8 14 0.00031 35.3 8.9 27 259-285 207-233 (422)
398 PF04097 Nic96: Nup93/Nic96; 78.8 75 0.0016 32.4 14.7 25 212-236 417-441 (613)
399 COG3914 Spy Predicted O-linked 78.6 35 0.00077 33.8 11.5 112 181-300 74-186 (620)
400 PF10475 DUF2450: Protein of u 78.5 52 0.0011 29.8 15.1 89 216-316 134-223 (291)
401 PF09797 NatB_MDM20: N-acetylt 78.4 22 0.00048 33.4 10.3 46 189-235 198-243 (365)
402 COG3947 Response regulator con 78.3 43 0.00094 30.3 11.0 56 262-317 285-340 (361)
403 COG5191 Uncharacterized conser 78.1 7.6 0.00016 35.2 6.4 67 258-324 109-176 (435)
404 PF10938 YfdX: YfdX protein; 78.0 20 0.00044 29.1 8.6 106 213-318 6-145 (155)
405 PF11846 DUF3366: Domain of un 77.9 9.8 0.00021 32.1 7.0 49 273-322 128-176 (193)
406 KOG3783 Uncharacterized conser 77.7 42 0.00092 32.9 11.7 104 182-297 239-344 (546)
407 KOG1914 mRNA cleavage and poly 76.0 85 0.0019 31.0 19.1 117 190-319 347-464 (656)
408 PF07219 HemY_N: HemY protein 75.9 15 0.00033 27.8 6.9 50 256-305 59-108 (108)
409 PF00244 14-3-3: 14-3-3 protei 75.2 57 0.0012 28.6 13.4 47 273-319 143-198 (236)
410 cd02680 MIT_calpain7_2 MIT: do 75.0 6.3 0.00014 27.7 4.1 36 190-241 3-38 (75)
411 COG4455 ImpE Protein of avirul 74.9 13 0.00028 32.1 6.7 60 181-241 8-67 (273)
412 COG5191 Uncharacterized conser 74.9 3.8 8.2E-05 37.1 3.7 85 196-294 95-180 (435)
413 COG5187 RPN7 26S proteasome re 74.6 67 0.0014 29.1 15.7 102 175-286 116-222 (412)
414 PF04348 LppC: LppC putative l 74.6 0.98 2.1E-05 44.9 0.0 167 177-358 27-195 (536)
415 PRK13184 pknD serine/threonine 74.4 40 0.00087 35.9 11.5 97 216-323 482-585 (932)
416 PF10858 DUF2659: Protein of u 74.4 47 0.001 27.3 11.2 127 133-286 70-201 (220)
417 PRK11619 lytic murein transgly 73.4 1.1E+02 0.0025 31.2 14.4 129 183-316 321-465 (644)
418 KOG1914 mRNA cleavage and poly 73.1 1E+02 0.0022 30.5 15.2 122 190-323 309-434 (656)
419 PHA02537 M terminase endonucle 72.8 52 0.0011 28.7 10.1 21 185-205 94-114 (230)
420 KOG0686 COP9 signalosome, subu 70.9 38 0.00082 32.1 9.2 99 211-319 152-258 (466)
421 PF08311 Mad3_BUB1_I: Mad3/BUB 70.8 48 0.001 25.8 9.0 85 223-317 40-126 (126)
422 KOG2908 26S proteasome regulat 70.7 90 0.0019 28.9 12.0 94 183-281 84-182 (380)
423 KOG2422 Uncharacterized conser 70.3 1.2E+02 0.0026 30.2 17.4 129 188-316 252-404 (665)
424 PHA02537 M terminase endonucle 70.2 55 0.0012 28.6 9.7 106 217-323 91-211 (230)
425 cd00280 TRFH Telomeric Repeat 69.9 57 0.0012 27.4 9.1 39 258-297 113-151 (200)
426 KOG4014 Uncharacterized conser 69.5 68 0.0015 27.0 13.1 143 176-342 36-215 (248)
427 PF14863 Alkyl_sulf_dimr: Alky 68.3 16 0.00035 29.2 5.6 48 177-225 73-120 (141)
428 cd02683 MIT_1 MIT: domain cont 68.1 39 0.00085 23.8 7.3 24 262-285 12-35 (77)
429 KOG2066 Vacuolar assembly/sort 68.1 1.5E+02 0.0034 30.6 20.0 66 24-94 347-419 (846)
430 cd02679 MIT_spastin MIT: domai 68.0 12 0.00025 26.7 4.2 38 188-241 3-40 (79)
431 KOG1464 COP9 signalosome, subu 67.7 82 0.0018 28.3 10.1 56 221-285 39-94 (440)
432 PF00244 14-3-3: 14-3-3 protei 67.6 86 0.0019 27.5 13.0 56 225-284 142-197 (236)
433 KOG2561 Adaptor protein NUB1, 66.3 46 0.001 31.8 8.8 112 174-285 163-296 (568)
434 PF09205 DUF1955: Domain of un 65.9 42 0.00092 26.6 7.2 54 183-237 95-148 (161)
435 PF04212 MIT: MIT (microtubule 65.0 17 0.00037 24.8 4.7 25 260-284 9-33 (69)
436 PF09205 DUF1955: Domain of un 63.9 61 0.0013 25.8 7.7 56 266-321 96-151 (161)
437 cd02681 MIT_calpain7_1 MIT: do 62.7 15 0.00032 25.9 3.9 18 221-238 18-35 (76)
438 KOG2114 Vacuolar assembly/sort 62.4 69 0.0015 33.3 9.8 54 182-236 342-395 (933)
439 COG3014 Uncharacterized protei 62.2 1.4E+02 0.0029 27.9 11.4 110 213-323 62-227 (449)
440 smart00668 CTLH C-terminal to 62.1 17 0.00038 23.5 4.1 24 32-55 5-28 (58)
441 KOG3807 Predicted membrane pro 61.7 1.4E+02 0.003 27.7 12.3 95 213-322 188-307 (556)
442 PF04840 Vps16_C: Vps16, C-ter 61.6 1.3E+02 0.0029 27.7 12.7 50 32-89 181-230 (319)
443 KOG2062 26S proteasome regulat 61.4 1.4E+02 0.0031 30.7 11.6 57 295-354 506-562 (929)
444 cd02682 MIT_AAA_Arch MIT: doma 61.2 16 0.00035 25.6 3.9 29 291-319 7-35 (75)
445 PF10952 DUF2753: Protein of u 61.0 48 0.001 25.8 6.6 60 259-318 4-78 (140)
446 KOG1463 26S proteasome regulat 60.8 1.4E+02 0.0031 27.7 12.5 132 180-319 10-157 (411)
447 TIGR03362 VI_chp_7 type VI sec 60.3 1.4E+02 0.003 27.3 13.5 164 32-237 103-278 (301)
448 TIGR02302 aProt_lowcomp conser 59.4 2.4E+02 0.0053 29.9 14.5 26 131-156 493-518 (851)
449 PF04190 DUF410: Protein of un 59.0 1.3E+02 0.0029 26.7 15.5 59 261-319 107-170 (260)
450 PF07219 HemY_N: HemY protein 58.8 76 0.0016 23.9 8.9 52 172-224 57-108 (108)
451 KOG2114 Vacuolar assembly/sort 58.5 79 0.0017 32.9 9.4 40 249-288 361-401 (933)
452 PRK10316 hypothetical protein; 58.4 1.2E+02 0.0026 25.9 10.5 60 258-317 129-196 (209)
453 COG4941 Predicted RNA polymera 58.3 1.6E+02 0.0034 27.4 14.2 121 189-323 271-398 (415)
454 cd02679 MIT_spastin MIT: domai 57.3 22 0.00048 25.3 4.1 27 259-285 11-37 (79)
455 KOG0529 Protein geranylgeranyl 55.8 1.9E+02 0.0041 27.6 13.3 126 188-323 89-228 (421)
456 KOG4279 Serine/threonine prote 55.0 1.5E+02 0.0033 30.7 10.6 121 187-322 256-398 (1226)
457 KOG0546 HSP90 co-chaperone CPR 54.8 29 0.00064 32.1 5.4 109 179-300 227-353 (372)
458 PF02064 MAS20: MAS20 protein 54.5 31 0.00066 26.8 4.8 30 261-290 68-97 (121)
459 COG3107 LppC Putative lipoprot 54.3 2.3E+02 0.005 28.1 11.9 57 216-283 70-126 (604)
460 KOG4563 Cell cycle-regulated h 53.6 37 0.00081 31.6 5.8 27 214-240 46-72 (400)
461 KOG2908 26S proteasome regulat 53.1 1.9E+02 0.0042 26.8 12.1 91 217-314 83-181 (380)
462 cd02681 MIT_calpain7_1 MIT: do 53.1 34 0.00074 24.1 4.5 24 262-285 12-35 (76)
463 KOG0292 Vesicle coat complex C 52.8 3.1E+02 0.0067 29.1 14.9 29 177-205 1087-1115(1202)
464 KOG2034 Vacuolar sorting prote 52.6 3.1E+02 0.0067 29.0 17.5 52 34-93 364-415 (911)
465 TIGR02710 CRISPR-associated pr 52.2 2.1E+02 0.0046 27.1 14.7 56 179-234 135-196 (380)
466 cd02684 MIT_2 MIT: domain cont 52.1 29 0.00063 24.3 4.0 17 222-238 19-35 (75)
467 PF10952 DUF2753: Protein of u 51.6 1.2E+02 0.0025 23.8 9.9 74 212-285 4-79 (140)
468 KOG0292 Vesicle coat complex C 51.2 76 0.0016 33.3 8.0 46 185-236 654-699 (1202)
469 PF04348 LppC: LppC putative l 51.0 5.1 0.00011 39.9 0.0 117 195-321 10-129 (536)
470 PF11846 DUF3366: Domain of un 50.1 67 0.0014 27.0 6.8 47 192-240 129-175 (193)
471 PF05053 Menin: Menin; InterP 49.5 81 0.0017 31.3 7.7 72 188-283 274-345 (618)
472 smart00777 Mad3_BUB1_I Mad3/BU 49.5 1.2E+02 0.0027 23.6 7.9 59 250-315 64-124 (125)
473 PF13779 DUF4175: Domain of un 49.4 3.5E+02 0.0075 28.7 15.4 19 4-22 371-391 (820)
474 KOG4014 Uncharacterized conser 49.1 1.5E+02 0.0033 25.0 8.2 63 269-338 86-155 (248)
475 PF04212 MIT: MIT (microtubule 48.5 48 0.0011 22.5 4.7 27 293-319 8-34 (69)
476 cd02680 MIT_calpain7_2 MIT: do 48.5 36 0.00078 23.9 3.9 21 265-285 15-35 (75)
477 PF12921 ATP13: Mitochondrial 48.4 1.3E+02 0.0028 23.5 11.4 86 264-350 10-111 (126)
478 cd02678 MIT_VPS4 MIT: domain c 47.9 37 0.0008 23.7 4.1 18 221-238 18-35 (75)
479 KOG0128 RNA-binding protein SA 47.1 2.9E+02 0.0063 28.9 11.3 118 191-319 96-219 (881)
480 KOG0687 26S proteasome regulat 46.8 2.4E+02 0.0052 26.1 12.0 106 209-322 104-213 (393)
481 PF13838 Clathrin_H_link: Clat 45.5 36 0.00077 23.3 3.4 32 32-64 10-41 (66)
482 PF10607 CLTH: CTLH/CRA C-term 45.3 76 0.0016 25.1 6.1 59 33-92 6-65 (145)
483 KOG4151 Myosin assembly protei 44.8 87 0.0019 32.2 7.4 99 181-292 60-163 (748)
484 KOG2422 Uncharacterized conser 44.2 3.5E+02 0.0075 27.2 11.4 137 175-322 285-451 (665)
485 PF09477 Type_III_YscG: Bacter 43.6 1.4E+02 0.0031 22.6 10.1 42 186-228 18-59 (116)
486 KOG3677 RNA polymerase I-assoc 43.4 77 0.0017 30.2 6.3 113 213-336 239-352 (525)
487 COG4259 Uncharacterized protei 43.4 1.4E+02 0.003 22.4 6.4 45 279-323 60-105 (121)
488 cd02678 MIT_VPS4 MIT: domain c 42.8 1.1E+02 0.0024 21.2 7.1 24 262-285 12-35 (75)
489 COG5187 RPN7 26S proteasome re 42.5 2.7E+02 0.0058 25.4 12.8 105 209-321 115-223 (412)
490 PF04090 RNA_pol_I_TF: RNA pol 41.9 2.2E+02 0.0048 24.3 14.5 66 174-240 41-107 (199)
491 KOG1920 IkappaB kinase complex 41.8 95 0.0021 33.7 7.3 45 10-54 656-703 (1265)
492 cd02656 MIT MIT: domain contai 41.5 65 0.0014 22.3 4.5 24 262-285 12-35 (75)
493 PF09670 Cas_Cas02710: CRISPR- 41.1 1.9E+02 0.0041 27.4 8.9 63 257-319 132-198 (379)
494 smart00671 SEL1 Sel1-like repe 40.8 63 0.0014 18.0 3.8 13 305-317 20-32 (36)
495 PRK15490 Vi polysaccharide bio 40.3 2.6E+02 0.0056 28.2 9.8 57 257-315 43-99 (578)
496 PF12931 Sec16_C: Sec23-bindin 40.0 2.8E+02 0.0061 25.0 13.2 102 208-319 115-227 (284)
497 cd02684 MIT_2 MIT: domain cont 39.8 68 0.0015 22.4 4.3 24 262-285 12-35 (75)
498 KOG1811 Predicted Zn2+-binding 39.8 1.7E+02 0.0038 29.4 8.3 92 267-363 567-658 (1141)
499 smart00745 MIT Microtubule Int 39.7 1.3E+02 0.0027 20.8 7.5 26 260-285 12-37 (77)
500 PF09797 NatB_MDM20: N-acetylt 39.5 73 0.0016 29.9 5.9 48 269-316 196-243 (365)
No 1
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.6e-49 Score=332.46 Aligned_cols=340 Identities=33% Similarity=0.506 Sum_probs=309.8
Q ss_pred CCCCcCCChHhHHHHHHcCChHHHHHHHHHh---hhcc------ccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcC
Q 017532 24 SLNDLVPDLASLQDLATRGSWRTIIDNVSRA---RSQS------LLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLE 94 (370)
Q Consensus 24 ~~~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~---~~~~------~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~ 94 (370)
+.+.+|..+.++.+|+....|..++.++.+. .+++ +...|.+.++.|+++..++.+++++++|..++..++
T Consensus 17 ~ad~~~~~f~~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~t~~~lq~wT~r~~~l~kLR~~~~a~~EL~~f~ 96 (366)
T KOG2796|consen 17 NADSVEQSFVGLKQLISCRNWRAAVDLCGRLLTAHGQGYGKSGLLTSHTTDSLQLWTVRLALLVKLRLFQNAEMELEPFG 96 (366)
T ss_pred ccCCchhhhhhHHHHHHhhhhHHHHhhhHHHHHHHhhhhhhhheeeccchhHHHHHHHHHHHHHHHhhhHHHHhhhhhhc
Confidence 5566778999999999999999999888773 2222 346788889999999999999999999999999999
Q ss_pred CCCCCCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHh-hHHhHHHHHHHH
Q 017532 95 DFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEK-LEESVKSWKKRE 173 (370)
Q Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~-~~~~~~~~~~~~ 173 (370)
++|.|++||+++|++||++.|||+||++|+++|+++.++|++++.+++++.+...+++++.....+. .+..+++|++|+
T Consensus 97 ~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl 176 (366)
T KOG2796|consen 97 NLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRL 176 (366)
T ss_pred cCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999987765543 367899999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
..+.+.++.++...|+|.-....++++++.+|..++.+...||++.++.||.+.|..+|+++.+....- .+-.
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL-------~~~q 249 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKL-------DGLQ 249 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh-------hccc
Confidence 999999999999999999999999999999965899999999999999999999999999877543321 1112
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHH
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNL 333 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl 333 (370)
+...+..+.+.++.-+++|.+|...|.+.+..||.++.+.||.|.|++++|+..+|++.++.+++..|..+.++++++||
T Consensus 250 ~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL 329 (366)
T KOG2796|consen 250 GKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNL 329 (366)
T ss_pred hhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHH
Confidence 22567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCchhhHHHHHHHHhhhCCCCCCCccccC
Q 017532 334 CSMYELAYVNHSDIKRTLSSWIGRVAPDDFDSSCTRI 370 (370)
Q Consensus 334 ~~lyel~~~~~~~~~~~ll~~~~~~~~d~~~~~~~~~ 370 (370)
+++|||+..+..+.|+.+..||+++.||+|+.+|+|+
T Consensus 330 ~tmyEL~Ys~~~~~k~~l~~~ia~~~~d~f~~~c~~~ 366 (366)
T KOG2796|consen 330 TTMYELEYSRSMQKKQALLEAVAGKEGDSFNTQCLKL 366 (366)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHhccCCCcccchhhcC
Confidence 9999999999999999999999999999999999996
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=5.5e-22 Score=185.11 Aligned_cols=303 Identities=15% Similarity=0.041 Sum_probs=208.7
Q ss_pred HHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCC--CCCcccccCCC-CC
Q 017532 35 LQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNS--SGYQYETYPHI-YP 111 (370)
Q Consensus 35 l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~--~~~~~~~~~~~-~~ 111 (370)
...+-..|+..+|...|-+++.. .|.= ...|+..+..+...|...+|+..+.+...+++ ++.|+...... ..
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~----qp~f-AiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~ 265 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIET----QPCF-AIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEA 265 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhh----CCce-eeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHH
Confidence 33444577777777777776433 3531 22234335556667777777777777776665 33333321100 00
Q ss_pred CCCCcccchhHHHH------------HHHcCcccCCccchHHHHHHHHHHHHHHHH--------HHhhHhhHHhHHHHHH
Q 017532 112 NRTGSMVPFSLRWL------------YAVLPIKLSNRQVGLDRFYELLDFVREKLA--------RKLAEKLEESVKSWKK 171 (370)
Q Consensus 112 ~~~~~~~~~~~r~l------------~a~~~~~~g~~~~al~~l~~ll~~~~~~~~--------~~~~~~~~~~~~~~~~ 171 (370)
......+.-++|.+ .+-+++..|..+.|++.+...++..+.... ....+...+++..+..
T Consensus 266 ~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnk 345 (966)
T KOG4626|consen 266 RIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNK 345 (966)
T ss_pred hcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHH
Confidence 00001111122222 123356788899999998887654322211 1123445566666666
Q ss_pred HH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCcc
Q 017532 172 RE------IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFE 245 (370)
Q Consensus 172 ~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~ 245 (370)
.+ +..+++||+++.++|.+++|..+|..+++..| ....+.++||.+|-++|++++|+.+|+.+++
T Consensus 346 aL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p-~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr-------- 416 (966)
T KOG4626|consen 346 ALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFP-EFAAAHNNLASIYKQQGNLDDAIMCYKEALR-------- 416 (966)
T ss_pred HHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhCh-hhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--------
Confidence 55 77888999999999999999999999999999 8888899999999999999999999999995
Q ss_pred CCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcch
Q 017532 246 DGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVAL 325 (370)
Q Consensus 246 ~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~ 325 (370)
+.|.+ ++++.|+|.+|-.+|+.+.|+.+|.++|..+|....+++|+|.++...|+..+||..|+.++.++|++
T Consensus 417 ----I~P~f-Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDf-- 489 (966)
T KOG4626|consen 417 ----IKPTF-ADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDF-- 489 (966)
T ss_pred ----cCchH-HHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCC--
Confidence 46677 88899999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hHHHHHHHHHHHHhccCC-ch-hhHHHHHHHHhhhC
Q 017532 326 NETLVVNLCSMYELAYVN-HS-DIKRTLSSWIGRVA 359 (370)
Q Consensus 326 ~~~~~~nl~~lyel~~~~-~~-~~~~~ll~~~~~~~ 359 (370)
.....|+.......-+. +. +.-.++.+.++++.
T Consensus 490 -pdA~cNllh~lq~vcdw~D~d~~~~kl~sivrdql 524 (966)
T KOG4626|consen 490 -PDAYCNLLHCLQIVCDWTDYDKRMKKLVSIVRDQL 524 (966)
T ss_pred -chhhhHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 77788887666543332 21 22334444455544
No 3
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=6.7e-20 Score=184.03 Aligned_cols=284 Identities=13% Similarity=0.099 Sum_probs=211.2
Q ss_pred hHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCC
Q 017532 34 SLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNR 113 (370)
Q Consensus 34 ~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~ 113 (370)
....+.+.|+|++|++.|++++.. .|. ...+..++.++.++|++++|+..++.+..+++...
T Consensus 133 ~G~~~~~~~~~~~Ai~~y~~al~~----~p~--~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~------------ 194 (615)
T TIGR00990 133 KGNKAYRNKDFNKAIKLYSKAIEC----KPD--PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYS------------ 194 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc----CCc--hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCH------------
Confidence 456788999999999999998654 465 23455568999999999999999999987764211
Q ss_pred CCcccchhHHHHHHHcCcccCCccchHHHHHHHHHH-----------------------HHHHHHH--------------
Q 017532 114 TGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDF-----------------------VREKLAR-------------- 156 (370)
Q Consensus 114 ~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~-----------------------~~~~~~~-------------- 156 (370)
....+ .+.++..+|++++|+..+..+... ....+..
T Consensus 195 -----~a~~~--~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~ 267 (615)
T TIGR00990 195 -----KALNR--RANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNY 267 (615)
T ss_pred -----HHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHH
Confidence 01111 233345566666665544222100 0000000
Q ss_pred -------------------------------------HhhHhhHHhHHHHHHH---------HHHHHHHHHHHHHhcCCH
Q 017532 157 -------------------------------------KLAEKLEESVKSWKKR---------EIFVLNCLIGYHLSSKEY 190 (370)
Q Consensus 157 -------------------------------------~~~~~~~~~~~~~~~~---------~~~~~~~la~~~~~~g~~ 190 (370)
...+...++.+.+... ...+++.+|.++..+|++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~ 347 (615)
T TIGR00990 268 LQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKH 347 (615)
T ss_pred HHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCH
Confidence 0001122333333322 245688999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcC
Q 017532 191 NVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGK 270 (370)
Q Consensus 191 ~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g 270 (370)
++|+..|++++..+| .....+..+|.++...|++++|+.+|++++++.++ . ..++.++|.+++..|
T Consensus 348 ~eA~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~------------~-~~~~~~lg~~~~~~g 413 (615)
T TIGR00990 348 LEALADLSKSIELDP-RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE------------D-PDIYYHRAQLHFIKG 413 (615)
T ss_pred HHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------------C-HHHHHHHHHHHHHcC
Confidence 999999999999999 99999999999999999999999999999975433 2 556888999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHH
Q 017532 271 DYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRT 350 (370)
Q Consensus 271 ~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ 350 (370)
++++|+..|+++++++|++..++.++|.++...|++++|+..|++++...|+. ..++.+++.+|.- .+..+...+
T Consensus 414 ~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~---~~~~~~lg~~~~~--~g~~~~A~~ 488 (615)
T TIGR00990 414 EFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEA---PDVYNYYGELLLD--QNKFDEAIE 488 (615)
T ss_pred CHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHH--ccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987 7788888888863 344566666
Q ss_pred HHHHHhhhCCC
Q 017532 351 LSSWIGRVAPD 361 (370)
Q Consensus 351 ll~~~~~~~~d 361 (370)
..+......|+
T Consensus 489 ~~~~Al~l~p~ 499 (615)
T TIGR00990 489 KFDTAIELEKE 499 (615)
T ss_pred HHHHHHhcCCc
Confidence 66655544443
No 4
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=7.4e-22 Score=184.28 Aligned_cols=262 Identities=16% Similarity=0.124 Sum_probs=188.0
Q ss_pred HHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCC-CcccccCCCCCCCCC
Q 017532 37 DLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSG-YQYETYPHIYPNRTG 115 (370)
Q Consensus 37 ~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~ 115 (370)
.+-.+|+...||..|+++. ..+|+-...+++ .+..|-.++.|+.|...+.+...+.+-. ..+.....+|-..+.
T Consensus 227 ~f~~~Gei~~aiq~y~eAv----kldP~f~dAYiN-LGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ 301 (966)
T KOG4626|consen 227 VFNAQGEIWLAIQHYEEAV----KLDPNFLDAYIN-LGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGL 301 (966)
T ss_pred HHhhcchHHHHHHHHHHhh----cCCCcchHHHhh-HHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEecccc
Confidence 4556777777777777753 345663333333 3666777777777777777666555311 011111111100000
Q ss_pred --cc-------------cchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHH--------hhHhhHHhHHHHHHH
Q 017532 116 --SM-------------VPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARK--------LAEKLEESVKSWKKR 172 (370)
Q Consensus 116 --~~-------------~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~--------~~~~~~~~~~~~~~~ 172 (370)
-. .|.....+ +-.....|+..+|++.+...+..|....... +....+++..+++..
T Consensus 302 ldlAI~~Ykral~~~P~F~~Ay~Nl-anALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~a 380 (966)
T KOG4626|consen 302 LDLAIDTYKRALELQPNFPDAYNNL-ANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKA 380 (966)
T ss_pred HHHHHHHHHHHHhcCCCchHHHhHH-HHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 00 11111112 2223567999999999999887766544321 233445667777766
Q ss_pred H------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccC
Q 017532 173 E------IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFED 246 (370)
Q Consensus 173 ~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~ 246 (370)
+ +.++++||.+|-++|++++|+..|++++++.| ...++++++|..|-.+|+.+.|+++|.+|+
T Consensus 381 l~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P-~fAda~~NmGnt~ke~g~v~~A~q~y~rAI---------- 449 (966)
T KOG4626|consen 381 LEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKP-TFADALSNMGNTYKEMGDVSAAIQCYTRAI---------- 449 (966)
T ss_pred HhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCc-hHHHHHHhcchHHHHhhhHHHHHHHHHHHH----------
Confidence 5 78899999999999999999999999999999 999999999999999999999999999999
Q ss_pred CccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC---CHHHHHHHHHHHHH
Q 017532 247 GLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLR---DLSDSIKVLENALE 318 (370)
Q Consensus 247 ~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g---~~~~A~~~l~~al~ 318 (370)
..+|.+ ++++.|+|.+|-..|...+||..|+.++.++|+.+.++.|++-|+-.-. ++++-++-+.++++
T Consensus 450 --~~nPt~-AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl~sivr 521 (966)
T KOG4626|consen 450 --QINPTF-AEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKLVSIVR 521 (966)
T ss_pred --hcCcHH-HHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 568888 9999999999999999999999999999999999999999998886654 45555554444443
No 5
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=3.3e-19 Score=179.19 Aligned_cols=296 Identities=8% Similarity=-0.049 Sum_probs=194.5
Q ss_pred CCCCcCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcc
Q 017532 24 SLNDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQY 103 (370)
Q Consensus 24 ~~~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~ 103 (370)
.|.+.......+......|++++|+..++++.. .+|.+...+ ...+.++.+.|++++|...++++..+++...
T Consensus 72 ~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~----~~P~~~~a~-~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~-- 144 (656)
T PRK15174 72 AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLA----VNVCQPEDV-LLVASVLLKSKQYATVADLAEQAWLAFSGNS-- 144 (656)
T ss_pred CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHH----hCCCChHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--
Confidence 444444444555666667777777777777643 346653333 3336667777777777777777765543110
Q ss_pred cccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHH-------HHHHhhHhhHHhHHHHHHHH---
Q 017532 104 ETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREK-------LARKLAEKLEESVKSWKKRE--- 173 (370)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~-------~~~~~~~~~~~~~~~~~~~~--- 173 (370)
......+.+....|+.++|+..+..++...+.. ......++..++....+..+
T Consensus 145 -----------------~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~ 207 (656)
T PRK15174 145 -----------------QIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFF 207 (656)
T ss_pred -----------------HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 011123334456677777777666543221100 00011122233333333211
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHHhhcCCcc
Q 017532 174 ----IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEG----AKKSFNRVEEMLNEGKFE 245 (370)
Q Consensus 174 ----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~----A~~~~~~a~~l~~~~~~~ 245 (370)
......++.++...|++++|+..++++++..| +++.+++.+|.++...|++++ |+..|++++++.|+
T Consensus 208 ~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~---- 282 (656)
T PRK15174 208 ALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD---- 282 (656)
T ss_pred CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC----
Confidence 12234456778888999999999999988888 888888888999998998885 78888888865443
Q ss_pred CCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcch
Q 017532 246 DGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVAL 325 (370)
Q Consensus 246 ~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~ 325 (370)
. ..++.++|.++...|++++|+..|+++++.+|+++.++.++|.++...|++++|+..|+++++.+|+.
T Consensus 283 --------~-~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~-- 351 (656)
T PRK15174 283 --------N-VRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT-- 351 (656)
T ss_pred --------C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc--
Confidence 2 56677888898899999999999999998889888888889999989999999999999888888875
Q ss_pred hHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCCC
Q 017532 326 NETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDD 362 (370)
Q Consensus 326 ~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d~ 362 (370)
......++.++.. .+..+.....++...+..|+.
T Consensus 352 -~~~~~~~a~al~~--~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 352 -SKWNRYAAAALLQ--AGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred -hHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhChhh
Confidence 3444445555542 344677777777666665554
No 6
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.84 E-value=4.7e-18 Score=170.72 Aligned_cols=310 Identities=13% Similarity=0.116 Sum_probs=208.2
Q ss_pred ChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCc-----ccc
Q 017532 31 DLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQ-----YET 105 (370)
Q Consensus 31 ~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~-----~~~ 105 (370)
.......+.+.|+|++|+..+.+++.. +|.+...+ ..++.++..+|++++|..++..+..++....- ++.
T Consensus 163 ~~n~a~~~~~l~~~~~Ai~~~~~al~l----~p~~~~a~-~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~ 237 (615)
T TIGR00990 163 YSNRAACHNALGDWEKVVEDTTAALEL----DPDYSKAL-NRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVER 237 (615)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHc----CCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 334555678889999999999997653 57754444 44689999999999999887665433221100 000
Q ss_pred c------------CCCCCCCCCcccchh------------------------------HHHHHHHc-CcccCCccchHHH
Q 017532 106 Y------------PHIYPNRTGSMVPFS------------------------------LRWLYAVL-PIKLSNRQVGLDR 142 (370)
Q Consensus 106 ~------------~~~~~~~~~~~~~~~------------------------------~r~l~a~~-~~~~g~~~~al~~ 142 (370)
. ....+....+ ..+. +.+..... ....+.+.+|+..
T Consensus 238 ~l~~~a~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~ 316 (615)
T TIGR00990 238 LLKKFAESKAKEILETKPENLPS-VTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARA 316 (615)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHH
Confidence 0 0000000000 0000 00000000 0112445556665
Q ss_pred HHHHHHHH---HHHH------HH--HhhHhhHHhHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 017532 143 FYELLDFV---REKL------AR--KLAEKLEESVKSWKKRE------IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGN 205 (370)
Q Consensus 143 l~~ll~~~---~~~~------~~--~~~~~~~~~~~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 205 (370)
+..++... +... .. ...++.++++..+...+ ...+..+|.++...|++++|+..|+++++.+|
T Consensus 317 ~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 396 (615)
T TIGR00990 317 FEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS 396 (615)
T ss_pred HHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 55554321 1000 00 01233445555555544 56788999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh
Q 017532 206 GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIER 285 (370)
Q Consensus 206 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~ 285 (370)
.++.+++.+|.++...|++++|+.+|++++++.+ +. ...+.++|.++..+|++++|+..|++++..
T Consensus 397 -~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P------------~~-~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 462 (615)
T TIGR00990 397 -EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP------------DF-IFSHIQLGVTQYKEGSIASSMATFRRCKKN 462 (615)
T ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc------------cC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999996543 33 567889999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcch---hHHHHHHHH-HHHHhccCCchhhHHHHHHHHhhhCCC
Q 017532 286 DYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVAL---NETLVVNLC-SMYELAYVNHSDIKRTLSSWIGRVAPD 361 (370)
Q Consensus 286 ~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~---~~~~~~nl~-~lyel~~~~~~~~~~~ll~~~~~~~~d 361 (370)
+|+++.+++++|.++...|++++|++.|+++++++|+... ....+++.+ .+|+ ..+..++...++++.....|+
T Consensus 463 ~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~--~~~~~~eA~~~~~kAl~l~p~ 540 (615)
T TIGR00990 463 FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQ--WKQDFIEAENLCEKALIIDPE 540 (615)
T ss_pred CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999987411 111222322 2333 123456666676665555555
Q ss_pred C
Q 017532 362 D 362 (370)
Q Consensus 362 ~ 362 (370)
+
T Consensus 541 ~ 541 (615)
T TIGR00990 541 C 541 (615)
T ss_pred c
Confidence 4
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.83 E-value=2.3e-17 Score=156.81 Aligned_cols=264 Identities=14% Similarity=0.038 Sum_probs=193.8
Q ss_pred CCcCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccc
Q 017532 26 NDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYET 105 (370)
Q Consensus 26 ~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~ 105 (370)
+.++............|++++|+..+.++... +|.+...+ ...+..+...|++++|...++.+......
T Consensus 33 ~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~-~~la~~~~~~g~~~~A~~~~~~~l~~~~~------ 101 (389)
T PRK11788 33 NRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKV----DPETVELH-LALGNLFRRRGEVDRAIRIHQNLLSRPDL------ 101 (389)
T ss_pred hhccHHHHHHHHHHhcCChHHHHHHHHHHHhc----CcccHHHH-HHHHHHHHHcCcHHHHHHHHHHHhcCCCC------
Confidence 44455555566778899999999999998654 57643333 33477888999999999999888543210
Q ss_pred cCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHH------H-H-HhhHhhHHhHHHHHHHH----
Q 017532 106 YPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKL------A-R-KLAEKLEESVKSWKKRE---- 173 (370)
Q Consensus 106 ~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~------~-~-~~~~~~~~~~~~~~~~~---- 173 (370)
..... .......+.++...|+.++|+..+..++...+... . . ...+..+++.+.+....
T Consensus 102 --------~~~~~-~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 172 (389)
T PRK11788 102 --------TREQR-LLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG 172 (389)
T ss_pred --------CHHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC
Confidence 00000 01122234455677888999888877764211110 0 0 01223334444444332
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccC
Q 017532 174 -------IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFED 246 (370)
Q Consensus 174 -------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~ 246 (370)
...+..+|.++...|++++|+..++++++..| .+..++..+|.++.+.|++++|++.|+++...
T Consensus 173 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------- 243 (389)
T PRK11788 173 DSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQ-------- 243 (389)
T ss_pred CcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------
Confidence 23456788899999999999999999999999 88889999999999999999999999999953
Q ss_pred CccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 247 GLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 247 ~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
+|.....++..++.++...|++++|+..++++++.+|+...+ ..++.++...|++++|++.++++++..|+.
T Consensus 244 ----~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~~~l~~~P~~ 315 (389)
T PRK11788 244 ----DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLL-LALAQLLEEQEGPEAAQALLREQLRRHPSL 315 (389)
T ss_pred ----ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCcCH
Confidence 333224556778999999999999999999999999987554 899999999999999999999999999975
No 8
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.82 E-value=1.3e-17 Score=167.86 Aligned_cols=286 Identities=10% Similarity=-0.039 Sum_probs=215.8
Q ss_pred hHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCC
Q 017532 34 SLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNR 113 (370)
Q Consensus 34 ~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~ 113 (370)
-+..+.++|++.+|..++..+... .|.+...... .+.+.+..|++++|...++++..+++...
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~----~p~~~~~l~~-l~~~~l~~g~~~~A~~~l~~~l~~~P~~~------------ 110 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLT----AKNGRDLLRR-WVISPLASSQPDAVLQVVNKLLAVNVCQP------------ 110 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHh----CCCchhHHHH-HhhhHhhcCCHHHHHHHHHHHHHhCCCCh------------
Confidence 467888999999999999886543 5764334433 46778889999999999999977664221
Q ss_pred CCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHH--------HhhHhhHHhHHHHHHHH------HHHHHH
Q 017532 114 TGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLAR--------KLAEKLEESVKSWKKRE------IFVLNC 179 (370)
Q Consensus 114 ~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~--------~~~~~~~~~~~~~~~~~------~~~~~~ 179 (370)
......+.+....|+..+|++.+..++...+..... ...+..+++........ ..++..
T Consensus 111 -------~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~ 183 (656)
T PRK15174 111 -------EDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIAT 183 (656)
T ss_pred -------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHH
Confidence 112334555577899999999998887642221110 01222334444443322 233444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHH
Q 017532 180 LIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVS 259 (370)
Q Consensus 180 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~ 259 (370)
++ .+...|++++|+..+++++...|.........++.++...|++++|+..|++++++.++ . ..++
T Consensus 184 ~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~------------~-~~~~ 249 (656)
T PRK15174 184 CL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD------------G-AALR 249 (656)
T ss_pred HH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC------------C-HHHH
Confidence 43 47889999999999999999876344445566788999999999999999999965433 2 5567
Q ss_pred HhHHHHHHHcCCHHH----HHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Q 017532 260 RNKALIYLVGKDYVS----AVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCS 335 (370)
Q Consensus 260 ~~~g~~~~~~g~~~e----A~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~ 335 (370)
.++|.++...|++++ |+..|+++++.+|+++.++.++|.++...|++++|+..++++++.+|++ ..+..+++.
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~---~~a~~~La~ 326 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDL---PYVRAMYAR 326 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Confidence 889999999999996 8999999999999999999999999999999999999999999999998 788899999
Q ss_pred HHHhccCCchhhHHHHHHHHhhhCCCC
Q 017532 336 MYELAYVNHSDIKRTLSSWIGRVAPDD 362 (370)
Q Consensus 336 lyel~~~~~~~~~~~ll~~~~~~~~d~ 362 (370)
+|.- .+..+.....++.+....|+.
T Consensus 327 ~l~~--~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 327 ALRQ--VGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred HHHH--CCCHHHHHHHHHHHHHhCccc
Confidence 9874 444677777777776666664
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.82 E-value=1.3e-17 Score=173.82 Aligned_cols=307 Identities=13% Similarity=0.073 Sum_probs=177.7
Q ss_pred CCCCcCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCC--
Q 017532 24 SLNDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGY-- 101 (370)
Q Consensus 24 ~~~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~-- 101 (370)
++.+..........+...|++++|+..++++... .|.+...+ ...+.++.+.|++++|...++.+....+...
T Consensus 563 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 637 (899)
T TIGR02917 563 NPQEIEPALALAQYYLGKGQLKKALAILNEAADA----APDSPEAW-LMLGRAQLAAGDLNKAVSSFKKLLALQPDSALA 637 (899)
T ss_pred CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc----CCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 4455555556677777888888888888776432 34433333 3336777777888888887777754432110
Q ss_pred cccccCCC-CCCCCCcc------------cchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHH--------HHhhH
Q 017532 102 QYETYPHI-YPNRTGSM------------VPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLA--------RKLAE 160 (370)
Q Consensus 102 ~~~~~~~~-~~~~~~~~------------~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~--------~~~~~ 160 (370)
++...... ..+..... .........+.+....|+.++|+..+..+....+.... ....+
T Consensus 638 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 717 (899)
T TIGR02917 638 LLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQK 717 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCC
Confidence 00000000 00000000 00000111122223334444444444333221110000 00112
Q ss_pred hhHHhHHHHHHHH-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 017532 161 KLEESVKSWKKRE-----IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRV 235 (370)
Q Consensus 161 ~~~~~~~~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 235 (370)
...++.+.+.... ..++..++.++...|++++|+..++++++..| .+..+++.+|.++...|++++|+.+|+++
T Consensus 718 ~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 796 (899)
T TIGR02917 718 DYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHP-NDAVLRTALAELYLAQKDYDKAIKHYRTV 796 (899)
T ss_pred CHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 2233333333332 23455677777777777777777777777777 77777777777787788888888888777
Q ss_pred HHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 017532 236 EEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLEN 315 (370)
Q Consensus 236 ~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~ 315 (370)
++..++ . ..++.++|.++...|+ ++|+..++++++..|+++.++.++|.++...|++++|+++|++
T Consensus 797 ~~~~p~------------~-~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 862 (899)
T TIGR02917 797 VKKAPD------------N-AVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRK 862 (899)
T ss_pred HHhCCC------------C-HHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 754322 1 4456667777777777 7788888888888888887788888888888888888888888
Q ss_pred HHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHH
Q 017532 316 ALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWI 355 (370)
Q Consensus 316 al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~ 355 (370)
+++.+|.+ ..+.++++.+|.. .+..+....+++.+
T Consensus 863 a~~~~~~~---~~~~~~l~~~~~~--~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 863 AVNIAPEA---AAIRYHLALALLA--TGRKAEARKELDKL 897 (899)
T ss_pred HHhhCCCC---hHHHHHHHHHHHH--cCCHHHHHHHHHHH
Confidence 88888765 6777777777654 33356666655543
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.80 E-value=5.4e-17 Score=169.16 Aligned_cols=306 Identities=15% Similarity=0.158 Sum_probs=155.5
Q ss_pred CCCCcCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcc
Q 017532 24 SLNDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQY 103 (370)
Q Consensus 24 ~~~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~ 103 (370)
.|.++.........+...|++++|+..+.++... +|.+...++. .+..+.+.|++++|...++.+.+..+...
T Consensus 529 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-- 601 (899)
T TIGR02917 529 DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL----NPQEIEPALA-LAQYYLGKGQLKKALAILNEAADAAPDSP-- 601 (899)
T ss_pred CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CccchhHHHH-HHHHHHHCCCHHHHHHHHHHHHHcCCCCH--
Confidence 4455555555667778899999999999997543 4654444433 47789999999999999999876543211
Q ss_pred cccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHH------H--HhhHhhHHhHHHHHHHH--
Q 017532 104 ETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLA------R--KLAEKLEESVKSWKKRE-- 173 (370)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~------~--~~~~~~~~~~~~~~~~~-- 173 (370)
......+.+....|++++|+..+..++...+.... . ...+..+++...+....
T Consensus 602 -----------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 664 (899)
T TIGR02917 602 -----------------EAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALEL 664 (899)
T ss_pred -----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 00111223334455555555555554432111000 0 01112222333332222
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCc-----
Q 017532 174 ----IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKF----- 244 (370)
Q Consensus 174 ----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~----- 244 (370)
..++..++.++...|++++|+.+++.+....| .++..+..+|.++...|++++|++.|++++...++...
T Consensus 665 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~ 743 (899)
T TIGR02917 665 KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLH 743 (899)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHH
Confidence 23334444444444444444444444444444 44444444444444444444444444444432211000
Q ss_pred ----cCCc------------cchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHH
Q 017532 245 ----EDGL------------LSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSD 308 (370)
Q Consensus 245 ----~~~~------------~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~ 308 (370)
..+. ..+|+. ..++..+|.++...|++++|+..|+++++.+|+++.+++++|.++...|+ .+
T Consensus 744 ~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~ 821 (899)
T TIGR02917 744 RALLASGNTAEAVKTLEAWLKTHPND-AVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PR 821 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HH
Confidence 0000 001111 33445556666666666666666666666666666666666666666666 55
Q ss_pred HHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCC
Q 017532 309 SIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPD 361 (370)
Q Consensus 309 A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d 361 (370)
|++.+++++...|++ ...+.+++.+|. ..+..+....+++..-...|+
T Consensus 822 A~~~~~~~~~~~~~~---~~~~~~~~~~~~--~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 822 ALEYAEKALKLAPNI---PAILDTLGWLLV--EKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHHHHHHhhCCCC---cHHHHHHHHHHH--HcCCHHHHHHHHHHHHhhCCC
Confidence 666666666666654 445555555543 223345555555544444443
No 11
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=4.7e-18 Score=160.80 Aligned_cols=256 Identities=16% Similarity=0.186 Sum_probs=127.8
Q ss_pred hHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHH-HHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCC
Q 017532 34 SLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYN-TLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPN 112 (370)
Q Consensus 34 ~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~-~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~ 112 (370)
.+..+...=+|++|++.+.+.-. ..++ .-|+... +.++..++.|++|.+.|+.+.++++..+
T Consensus 325 ~~~~~~s~y~~~~A~~~~~klp~----h~~n--t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv----------- 387 (638)
T KOG1126|consen 325 EGYRSLSQYNCREALNLFEKLPS----HHYN--TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRV----------- 387 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHH----hcCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-----------
Confidence 44556677789999999988322 2233 2344333 5689999999999999999977664222
Q ss_pred CCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHh---------------hHhhHHhHHHHHHHH----
Q 017532 113 RTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKL---------------AEKLEESVKSWKKRE---- 173 (370)
Q Consensus 113 ~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~---------------~~~~~~~~~~~~~~~---- 173 (370)
..|.-++.-+++ +.+ +-++..+ +...+..++ +.+.+.+++.+++..
T Consensus 388 --~~meiyST~LWH------Lq~-~v~Ls~L------aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp 452 (638)
T KOG1126|consen 388 --KGMEIYSTTLWH------LQD-EVALSYL------AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP 452 (638)
T ss_pred --cchhHHHHHHHH------HHh-hHHHHHH------HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC
Confidence 111111111111 000 0111111 111111100 011112233332222
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccch
Q 017532 174 --IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSE 251 (370)
Q Consensus 174 --~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~ 251 (370)
+.+|..+|.-+....+|+.|...|+.++..+| .+..+|+.+|.+|+++++++.|+-+|++|++ ++
T Consensus 453 ~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~-rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~------------IN 519 (638)
T KOG1126|consen 453 RFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP-RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE------------IN 519 (638)
T ss_pred ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc-hhhHHHHhhhhheeccchhhHHHHHHHhhhc------------CC
Confidence 34444455455555555555555555555555 5555555555555555555555555555552 23
Q ss_pred HHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHH
Q 017532 252 VEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVV 331 (370)
Q Consensus 252 p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~ 331 (370)
|.. ..+....|.++.+.|+.++|+..|++|+.++|.++...+.+|.++..++++++|...+|++.+..|+. ..+++
T Consensus 520 P~n-svi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~e---s~v~~ 595 (638)
T KOG1126|consen 520 PSN-SVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQE---SSVFA 595 (638)
T ss_pred ccc-hhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcch---HHHHH
Confidence 333 34444455555555555555555555555555555555555555555555555555555555555554 44445
Q ss_pred HHHHHHH
Q 017532 332 NLCSMYE 338 (370)
Q Consensus 332 nl~~lye 338 (370)
-++.+|-
T Consensus 596 llgki~k 602 (638)
T KOG1126|consen 596 LLGKIYK 602 (638)
T ss_pred HHHHHHH
Confidence 5555554
No 12
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.79 E-value=1.4e-16 Score=170.21 Aligned_cols=274 Identities=16% Similarity=0.121 Sum_probs=195.4
Q ss_pred hHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCC
Q 017532 34 SLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNR 113 (370)
Q Consensus 34 ~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~ 113 (370)
..+.+.+.|+|++|++.+++++.. +|.+......+........|++++|...++++...++..
T Consensus 118 ~A~ll~~~g~~~eA~~~~~~~l~~----~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~------------- 180 (1157)
T PRK11447 118 QARLLATTGRTEEALASYDKLFNG----APPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGN------------- 180 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHccC----CCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCC-------------
Confidence 345688999999999999997543 354322111111112234699999999999997654311
Q ss_pred CCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHH----------HHHH-------------H----hh-HhhHHh
Q 017532 114 TGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVRE----------KLAR-------------K----LA-EKLEES 165 (370)
Q Consensus 114 ~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~----------~~~~-------------~----~~-~~~~~~ 165 (370)
. ..+...+.+....|+.++|+..+.+++..... .+.. . .. .....+
T Consensus 181 ~------~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A 254 (1157)
T PRK11447 181 T------GLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAA 254 (1157)
T ss_pred H------HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHH
Confidence 1 23455677778889999999999887532110 0000 0 00 000011
Q ss_pred HHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 017532 166 VKSWKKRE------IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEML 239 (370)
Q Consensus 166 ~~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~ 239 (370)
...+.... ......+|..+...|++++|+..|+++++.+| .++.++..+|.++.+.|++++|+.+|++++++.
T Consensus 255 ~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~ 333 (1157)
T PRK11447 255 RSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALD 333 (1157)
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 11111100 01122458889999999999999999999999 999999999999999999999999999999876
Q ss_pred hcCCccCCccchH-----HHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 017532 240 NEGKFEDGLLSEV-----EFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLE 314 (370)
Q Consensus 240 ~~~~~~~~~~~~p-----~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~ 314 (370)
++... .... ..........|.++...|++++|+..|+++++.+|+++.++.++|.++...|++++|++.|+
T Consensus 334 p~~~~----~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~ 409 (1157)
T PRK11447 334 PHSSN----RDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQ 409 (1157)
T ss_pred CCccc----hhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 65310 0000 00122345678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCcchhHHHHHHHHHHHH
Q 017532 315 NALERVPTVALNETLVVNLCSMYE 338 (370)
Q Consensus 315 ~al~~~p~~~~~~~~~~nl~~lye 338 (370)
++++.+|++ ...+.+++.+|.
T Consensus 410 ~aL~~~p~~---~~a~~~L~~l~~ 430 (1157)
T PRK11447 410 QALRMDPGN---TNAVRGLANLYR 430 (1157)
T ss_pred HHHHhCCCC---HHHHHHHHHHHH
Confidence 999999987 666777777764
No 13
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.78 E-value=1.2e-16 Score=170.77 Aligned_cols=279 Identities=11% Similarity=0.005 Sum_probs=176.9
Q ss_pred HHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCC
Q 017532 35 LQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRT 114 (370)
Q Consensus 35 l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 114 (370)
...++..|++++|+..+++++.. +|.+...+.. .+.++.+.|++++|...++++..+++...-...+..+.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~----~P~~~~a~~~-Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll---- 346 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRA----NPKDSEALGA-LGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLL---- 346 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHH----
Confidence 45678899999999999997653 5876555444 48889999999999999999976653211000000000
Q ss_pred CcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Q 017532 115 GSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCF 194 (370)
Q Consensus 115 ~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 194 (370)
....+...+..+......|++.+|+..+.+++...+.. ..++..+|.++...|++++|+
T Consensus 347 -~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~--------------------~~a~~~Lg~~~~~~g~~~eA~ 405 (1157)
T PRK11447 347 -KVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTD--------------------SYAVLGLGDVAMARKDYAAAE 405 (1157)
T ss_pred -HhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--------------------HHHHHHHHHHHHHCCCHHHHH
Confidence 00001111122334466788888888777766432211 134567788888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHH------------------------------------------HHHHHHcCCHHHHHHHH
Q 017532 195 DLMNESIGRGNGLDPILVSKL------------------------------------------GFIQMQVGDLEGAKKSF 232 (370)
Q Consensus 195 ~~~~~~l~~~~~~~~~~~~~l------------------------------------------g~~~~~~g~~~~A~~~~ 232 (370)
..|+++++.+| .+..++..+ |.++...|++++|++.|
T Consensus 406 ~~y~~aL~~~p-~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~ 484 (1157)
T PRK11447 406 RYYQQALRMDP-GNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQ 484 (1157)
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 88888888888 665554433 44556678999999999
Q ss_pred HHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH-------------------
Q 017532 233 NRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAI------------------- 293 (370)
Q Consensus 233 ~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~------------------- 293 (370)
++++++.|++ ..++..+|.++...|++++|+..|+++++.+|+++.++
T Consensus 485 ~~Al~~~P~~-------------~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~ 551 (1157)
T PRK11447 485 RQRLALDPGS-------------VWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAH 551 (1157)
T ss_pred HHHHHhCCCC-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 9988765442 34456667777777777777777777766666554322
Q ss_pred -------------------------------------------------------HHHHHHHHHhCCHHHHHHHHHHHHH
Q 017532 294 -------------------------------------------------------NNKALCLMYLRDLSDSIKVLENALE 318 (370)
Q Consensus 294 -------------------------------------------------------~nla~~~~~~g~~~~A~~~l~~al~ 318 (370)
.++|.++...|++++|++.|+++++
T Consensus 552 l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~ 631 (1157)
T PRK11447 552 LNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT 631 (1157)
T ss_pred HHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3345555566666666666666666
Q ss_pred hCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCCC
Q 017532 319 RVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDD 362 (370)
Q Consensus 319 ~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d~ 362 (370)
.+|++ ..++++++.+|... +..+++.+.++.+....|++
T Consensus 632 ~~P~~---~~a~~~la~~~~~~--g~~~eA~~~l~~ll~~~p~~ 670 (1157)
T PRK11447 632 REPGN---ADARLGLIEVDIAQ--GDLAAARAQLAKLPATANDS 670 (1157)
T ss_pred hCCCC---HHHHHHHHHHHHHC--CCHHHHHHHHHHHhccCCCC
Confidence 66665 55666666666532 33555555555555444443
No 14
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.76 E-value=2.2e-16 Score=163.03 Aligned_cols=142 Identities=9% Similarity=-0.012 Sum_probs=119.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHH
Q 017532 179 CLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLV 258 (370)
Q Consensus 179 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~ 258 (370)
.++..+...|++++|+..|+++++.+| + +.++..+|.++.+.|++++|+..|++++++.|+ . ..+
T Consensus 581 ~La~~l~~~Gr~~eAl~~~~~AL~l~P-~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd------------~-~~a 645 (987)
T PRK09782 581 WLHAQRYIPGQPELALNDLTRSLNIAP-S-ANAYVARATIYRQRHNVPAAVSDLRAALELEPN------------N-SNY 645 (987)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCC-C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------------C-HHH
Confidence 445555566999999999999999998 6 788899999999999999999999999976444 2 567
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Q 017532 259 SRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYE 338 (370)
Q Consensus 259 ~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lye 338 (370)
+.++|.++...|++++|+..|+++++.+|+++.+++++|.++...|++++|+..|+++++.+|+. ..+.+..+.+.+
T Consensus 646 ~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~---a~i~~~~g~~~~ 722 (987)
T PRK09782 646 QAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ---ALITPLTPEQNQ 722 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---chhhhhhhHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999987 455555555544
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.76 E-value=7.9e-16 Score=159.00 Aligned_cols=238 Identities=13% Similarity=0.018 Sum_probs=168.1
Q ss_pred HHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHH
Q 017532 65 HHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFY 144 (370)
Q Consensus 65 ~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~ 144 (370)
+...++. .+.++.. +++++|...+.+.....+ + .+ .++..+......|++.+|+..+.
T Consensus 476 ~~~a~~~-LG~~l~~-~~~~eAi~a~~~Al~~~P-d------------------~~-~~L~lA~al~~~Gr~eeAi~~~r 533 (987)
T PRK09782 476 DAAAWNR-LAKCYRD-TLPGVALYAWLQAEQRQP-D------------------AW-QHRAVAYQAYQVEDYATALAAWQ 533 (987)
T ss_pred CHHHHHH-HHHHHHh-CCcHHHHHHHHHHHHhCC-c------------------hH-HHHHHHHHHHHCCCHHHHHHHHH
Confidence 3333333 3666666 788888887777654332 1 01 13333444456788888887776
Q ss_pred HHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 017532 145 ELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGD 224 (370)
Q Consensus 145 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~ 224 (370)
.+....+.. ..++.+|.++...|++++|+..|+++++.+| .+......++......|+
T Consensus 534 ka~~~~p~~---------------------~a~~~la~all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~~~Gr 591 (987)
T PRK09782 534 KISLHDMSN---------------------EDLLAAANTAQAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQRYIPGQ 591 (987)
T ss_pred HHhccCCCc---------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhCCC
Confidence 653211100 1124567778888888888888888888888 776666666666667788
Q ss_pred HHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q 017532 225 LEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLR 304 (370)
Q Consensus 225 ~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g 304 (370)
+++|+..|++++++.| + ...+.++|.++...|++++|+..|+++++.+|+++.+++++|.++...|
T Consensus 592 ~~eAl~~~~~AL~l~P------------~--~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G 657 (987)
T PRK09782 592 PELALNDLTRSLNIAP------------S--ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSG 657 (987)
T ss_pred HHHHHHHHHHHHHhCC------------C--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 8888888888885432 1 3457788888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCCCCCC
Q 017532 305 DLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDDFDS 365 (370)
Q Consensus 305 ~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d~~~~ 365 (370)
++++|++.|+++++.+|++ ..+++|++.+|... +..+.....++.+-...|+..++
T Consensus 658 ~~eeAi~~l~~AL~l~P~~---~~a~~nLA~al~~l--Gd~~eA~~~l~~Al~l~P~~a~i 713 (987)
T PRK09782 658 DIAQSREMLERAHKGLPDD---PALIRQLAYVNQRL--DDMAATQHYARLVIDDIDNQALI 713 (987)
T ss_pred CHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHC--CCHHHHHHHHHHHHhcCCCCchh
Confidence 8888888888888888887 77888888888743 34677777777777777776554
No 16
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.74 E-value=5.3e-15 Score=151.77 Aligned_cols=330 Identities=9% Similarity=-0.046 Sum_probs=206.1
Q ss_pred CCCcCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCC--Cc
Q 017532 25 LNDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSG--YQ 102 (370)
Q Consensus 25 ~~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~--~~ 102 (370)
|.+..........++..|++.+|+..+++++.. .|.+.. + ...+.++...|++++|+..++++..+++.. .+
T Consensus 80 P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~----~P~~~~-~-~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~ 153 (765)
T PRK10049 80 PQNDDYQRGLILTLADAGQYDEALVKAKQLVSG----APDKAN-L-LALAYVYKRAGRHWDELRAMTQALPRAPQTQQYP 153 (765)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHH-H-HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 344333444556677788888888877776443 466544 3 334667778888888888888887665422 11
Q ss_pred ccccCCCCC-CCCCcc---------cchh-------HHHHHHHcCc-----ccCCc---cchHHHHHHHHHHHHH-----
Q 017532 103 YETYPHIYP-NRTGSM---------VPFS-------LRWLYAVLPI-----KLSNR---QVGLDRFYELLDFVRE----- 152 (370)
Q Consensus 103 ~~~~~~~~~-~~~~~~---------~~~~-------~r~l~a~~~~-----~~g~~---~~al~~l~~ll~~~~~----- 152 (370)
+.+...+.. +..... .|-. ......++.. ..++. ++|+..+..++...+.
T Consensus 154 ~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~ 233 (765)
T PRK10049 154 TEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDAT 233 (765)
T ss_pred HHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccc
Confidence 111000000 000000 0000 0000001100 01111 3455555444422100
Q ss_pred -HH--------H-HHhhHhhHHhHHHHHHHHH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHH
Q 017532 153 -KL--------A-RKLAEKLEESVKSWKKREI-------FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLD----PIL 211 (370)
Q Consensus 153 -~~--------~-~~~~~~~~~~~~~~~~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~----~~~ 211 (370)
.. . ....+...+++..++.... .+...++.+++..|++++|+..|++++...| .+ ...
T Consensus 234 ~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p-~~~~~~~~~ 312 (765)
T PRK10049 234 ADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPE-TIADLSDEE 312 (765)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCC-CCCCCChHH
Confidence 00 0 0011223344444444331 1233468888899999999999999888777 43 345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccC-CccchHHH-HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 017532 212 VSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFED-GLLSEVEF-RNLVSRNKALIYLVGKDYVSAVREYEECIERDYND 289 (370)
Q Consensus 212 ~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~-~~~~~p~~-~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~ 289 (370)
...++.++...|++++|+..++++.+..|...... .....|+. ...+...+|.++...|++++|++.|++++...|.+
T Consensus 313 ~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n 392 (765)
T PRK10049 313 LADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGN 392 (765)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 67778888899999999999998886543210000 00111221 14566789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCCCCCCc
Q 017532 290 IVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDDFDSS 366 (370)
Q Consensus 290 ~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d~~~~~ 366 (370)
+.++.++|.++...|++++|++.++++++.+|++ ..+.+.++.++.- .+.-++...+++.+....||+..+.
T Consensus 393 ~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~---~~l~~~~a~~al~--~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 393 QGLRIDYASVLQARGWPRAAENELKKAEVLEPRN---INLEVEQAWTALD--LQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHH--hCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 9999999999999999999999999999999997 7788888887663 4457888888888888888875443
No 17
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.72 E-value=8e-16 Score=128.72 Aligned_cols=163 Identities=12% Similarity=0.078 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
.+...||..|++.|++..|...++++++.+| .+..++..++.+|...|+.+.|.+.|++|+++.+++
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~------------ 102 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNN------------ 102 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCc------------
Confidence 4455788899999999999999999999999 999999999999999999999999999999765543
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHH
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIER--DYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVN 332 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~--~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~n 332 (370)
+++++|.|.-++.+|++++|...|+++++. .|..+.++-|+|.|.++.|+++.|.++|+++++.+|++ ......
T Consensus 103 -GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~---~~~~l~ 178 (250)
T COG3063 103 -GDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF---PPALLE 178 (250)
T ss_pred -cchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC---ChHHHH
Confidence 778899999999999999999999999875 36677899999999999999999999999999999987 566666
Q ss_pred HHHHHHhccCCchhhHHHHHHHHh
Q 017532 333 LCSMYELAYVNHSDIKRTLSSWIG 356 (370)
Q Consensus 333 l~~lyel~~~~~~~~~~~ll~~~~ 356 (370)
++...-. .+....++.+++.+.
T Consensus 179 ~a~~~~~--~~~y~~Ar~~~~~~~ 200 (250)
T COG3063 179 LARLHYK--AGDYAPARLYLERYQ 200 (250)
T ss_pred HHHHHHh--cccchHHHHHHHHHH
Confidence 6655432 333455555555443
No 18
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=2.8e-15 Score=137.26 Aligned_cols=136 Identities=17% Similarity=0.147 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
++++...|..++..|++..|...++.+|+.+| .+...+..+|.+|.+..+-++-.+.|++|.++.+.
T Consensus 326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~-~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~------------ 392 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDP-AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE------------ 392 (606)
T ss_pred HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCc-ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC------------
Confidence 56777778888888888888888888888888 77777888888888888888888888888865443
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
. ..+++.+|.+++..+++++|+..|+++++++|++..++..++.++++++++++++..|+.+++..|+.
T Consensus 393 n-~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~ 461 (606)
T KOG0547|consen 393 N-PDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNC 461 (606)
T ss_pred C-CchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 2 55677788888888888888888888888888888888888888888888888888888888888764
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.72 E-value=4.7e-15 Score=140.89 Aligned_cols=251 Identities=17% Similarity=0.141 Sum_probs=167.3
Q ss_pred HHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHH-
Q 017532 73 NTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVR- 151 (370)
Q Consensus 73 ~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~- 151 (370)
++..+...|++++|...+.++...++... ......+.+....|+.++|+..+..++....
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~-------------------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 101 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVDPETV-------------------ELHLALGNLFRRRGEVDRAIRIHQNLLSRPDL 101 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcCcccH-------------------HHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCC
Confidence 46677788999999999999977653111 1122334455678999999988877654210
Q ss_pred ------H---HHHH--HhhHhhHHhHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-----
Q 017532 152 ------E---KLAR--KLAEKLEESVKSWKKRE------IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDP----- 209 (370)
Q Consensus 152 ------~---~~~~--~~~~~~~~~~~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~----- 209 (370)
. .+.. ...+..+.+...+.... ..++..++.++...|++++|+..++++++.+| .+.
T Consensus 102 ~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~ 180 (389)
T PRK11788 102 TREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG-DSLRVEIA 180 (389)
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC-CcchHHHH
Confidence 0 0000 01122333444444332 45677778888888888888888888887766 332
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 017532 210 ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYND 289 (370)
Q Consensus 210 ~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~ 289 (370)
..+..+|.++...|++++|+.+|+++++..+ +. ..++..+|.++...|++++|++.|++++..+|.+
T Consensus 181 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------------~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 181 HFYCELAQQALARGDLDAARALLKKALAADP------------QC-VRASILLGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhHCc------------CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence 2445678888888888888888888885432 22 4556778888888888888888888888877765
Q ss_pred -HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCCC
Q 017532 290 -IVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDD 362 (370)
Q Consensus 290 -~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d~ 362 (370)
..+++.++.++...|++++|+..++++++.+|+. . ....++.++.. .+..+++..+++..-+..|+.
T Consensus 248 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~---~-~~~~la~~~~~--~g~~~~A~~~l~~~l~~~P~~ 315 (389)
T PRK11788 248 LSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGA---D-LLLALAQLLEE--QEGPEAAQALLREQLRRHPSL 315 (389)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---h-HHHHHHHHHHH--hCCHHHHHHHHHHHHHhCcCH
Confidence 3567778888888888888888888888888864 3 33667776653 344566666666554445553
No 20
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.71 E-value=4e-15 Score=129.91 Aligned_cols=195 Identities=12% Similarity=0.045 Sum_probs=157.6
Q ss_pred HHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 017532 126 YAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGN 205 (370)
Q Consensus 126 ~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 205 (370)
.+......|+.++|+..+...+...+.. ..++..+|.++...|++++|+..++++++..|
T Consensus 37 la~~~~~~~~~~~A~~~~~~~l~~~p~~--------------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 96 (234)
T TIGR02521 37 LALGYLEQGDLEVAKENLDKALEHDPDD--------------------YLAYLALALYYQQLGELEKAEDSFRRALTLNP 96 (234)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCccc--------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3445567888888888887765432111 14556788999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh
Q 017532 206 GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIER 285 (370)
Q Consensus 206 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~ 285 (370)
.+...+..+|.++...|++++|++.|++++.... .+.. ...+.++|.++...|++++|...|++++..
T Consensus 97 -~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~----------~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 164 (234)
T TIGR02521 97 -NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL----------YPQP-ARSLENAGLCALKAGDFDKAEKYLTRALQI 164 (234)
T ss_pred -CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc----------cccc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8889999999999999999999999999985321 1111 445777999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhh
Q 017532 286 DYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGR 357 (370)
Q Consensus 286 ~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~ 357 (370)
+|++..++..+|.++...|++++|+..+++++...|.. ...+..++.++... +..++...+.+.+..
T Consensus 165 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 165 DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQT---AESLWLGIRIARAL--GDVAAAQRYGAQLQK 231 (234)
T ss_pred CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHH--hhHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999997765 55666777777643 335666666555544
No 21
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.71 E-value=7.7e-17 Score=140.77 Aligned_cols=236 Identities=16% Similarity=0.137 Sum_probs=186.1
Q ss_pred HHHHHHH--HHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHH
Q 017532 67 LTYLAYN--TLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFY 144 (370)
Q Consensus 67 ~~~~~~~--~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~ 144 (370)
..|||-. +-||.++|.+.+|.+.++....--+ ++ ...++.++++.....+..|+..+-
T Consensus 221 ~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~------------------~~--dTfllLskvY~ridQP~~AL~~~~ 280 (478)
T KOG1129|consen 221 LDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP------------------HP--DTFLLLSKVYQRIDQPERALLVIG 280 (478)
T ss_pred HhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC------------------ch--hHHHHHHHHHHHhccHHHHHHHHh
Confidence 4565542 4689999999999999988764321 01 112345555566677778887776
Q ss_pred HHHHHHHHHHH--------HHhhHhhHHhHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 017532 145 ELLDFVREKLA--------RKLAEKLEESVKSWKKRE------IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPI 210 (370)
Q Consensus 145 ~ll~~~~~~~~--------~~~~~~~~~~~~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 210 (370)
+-+...+..+. ....++.+++.++++..+ .++.-.++..|+-.++.+-|+.+|+++++.+- .++.
T Consensus 281 ~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~spe 359 (478)
T KOG1129|consen 281 EGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPE 359 (478)
T ss_pred hhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChH
Confidence 66544333221 112344556777777665 44555677778888999999999999999999 9999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 017532 211 LVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI 290 (370)
Q Consensus 211 ~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~ 290 (370)
++.++|.+++..+++|-++.+|++++.... .|+..+++|+|+|.+....|++.-|..+|+-++..||++.
T Consensus 360 Lf~NigLCC~yaqQ~D~~L~sf~RAlstat----------~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ 429 (478)
T KOG1129|consen 360 LFCNIGLCCLYAQQIDLVLPSFQRALSTAT----------QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHG 429 (478)
T ss_pred HHhhHHHHHHhhcchhhhHHHHHHHHhhcc----------CcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchH
Confidence 999999999999999999999999997533 3344488999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 017532 291 VAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSM 336 (370)
Q Consensus 291 ~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~l 336 (370)
.+++|+|+.-.+.|+.++|.+++..+-...|+- ....+|+..+
T Consensus 430 ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m---~E~~~Nl~~~ 472 (478)
T KOG1129|consen 430 EALNNLAVLAARSGDILGARSLLNAAKSVMPDM---AEVTTNLQFM 472 (478)
T ss_pred HHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc---cccccceeEE
Confidence 999999999999999999999999999999986 5666777654
No 22
>PRK12370 invasion protein regulator; Provisional
Probab=99.68 E-value=1.2e-14 Score=144.05 Aligned_cols=147 Identities=16% Similarity=0.047 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
.++..+|.++...|++++|+..|+++++.+| +++.+++.+|.++...|++++|+..|++++++.|..
T Consensus 339 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~------------ 405 (553)
T PRK12370 339 QALGLLGLINTIHSEYIVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR------------ 405 (553)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC------------
Confidence 3455677777778888888888888888888 888888888888888888888888888888654432
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHH
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERD-YNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNL 333 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~-p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl 333 (370)
......++.+++..|++++|+..+++++..+ |+++.++.++|.++...|++++|+..++++....|.. ......+
T Consensus 406 -~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~---~~~~~~l 481 (553)
T PRK12370 406 -AAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITG---LIAVNLL 481 (553)
T ss_pred -hhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchh---HHHHHHH
Confidence 1223335556667788888888888887764 6777778888888888888888888888877776664 5555566
Q ss_pred HHHHH
Q 017532 334 CSMYE 338 (370)
Q Consensus 334 ~~lye 338 (370)
+..|.
T Consensus 482 ~~~~~ 486 (553)
T PRK12370 482 YAEYC 486 (553)
T ss_pred HHHHh
Confidence 65554
No 23
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=1.8e-15 Score=143.48 Aligned_cols=237 Identities=14% Similarity=0.066 Sum_probs=185.7
Q ss_pred HhHHHHHHcCChHHHHHHHHHhhhccc------------------------------cCCchHHHHHHHHHHHHHhhhcC
Q 017532 33 ASLQDLATRGSWRTIIDNVSRARSQSL------------------------------LTQPHHHLTYLAYNTLALMKLRR 82 (370)
Q Consensus 33 ~~l~~l~~~g~~~~Ai~~~~~~~~~~~------------------------------~~~P~~~~~~~~~~~~al~~l~~ 82 (370)
...+..+..++|++|.+.++.+.+..- ..+|..+.+|+.+ +-|+.-.+.
T Consensus 358 q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~-GNcfSLQkd 436 (638)
T KOG1126|consen 358 QLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCAL-GNCFSLQKD 436 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHh-cchhhhhhH
Confidence 356778888999999988888644320 1345544555443 677888899
Q ss_pred HHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhh
Q 017532 83 FDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKL 162 (370)
Q Consensus 83 ~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~ 162 (370)
++.|++.|++++.+|+-..| . +.-+|...-+.+.++.....++..+.-..
T Consensus 437 h~~Aik~f~RAiQldp~faY-a-------------------------yTLlGhE~~~~ee~d~a~~~fr~Al~~~~---- 486 (638)
T KOG1126|consen 437 HDTAIKCFKRAIQLDPRFAY-A-------------------------YTLLGHESIATEEFDKAMKSFRKALGVDP---- 486 (638)
T ss_pred HHHHHHHHHHhhccCCccch-h-------------------------hhhcCChhhhhHHHHhHHHHHHhhhcCCc----
Confidence 99999999999998862222 1 01123333344444444444443332211
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcC
Q 017532 163 EESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEG 242 (370)
Q Consensus 163 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~ 242 (370)
+. -.+++.+|.+|+++++++.|...|+++++++| .+..++..+|.++.+.|+.|+|+..|++|+-+.+.+
T Consensus 487 -rh--------YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP-~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn 556 (638)
T KOG1126|consen 487 -RH--------YNAWYGLGTVYLKQEKLEFAEFHFQKAVEINP-SNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKN 556 (638)
T ss_pred -hh--------hHHHHhhhhheeccchhhHHHHHHHhhhcCCc-cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCC
Confidence 11 15668999999999999999999999999999 999999999999999999999999999999765543
Q ss_pred CccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 243 KFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 243 ~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
....+.+|.+++..+++++|+..++++-++-|++..+++.+|.+|...|+.+.|+..|.=|..++|+
T Consensus 557 -------------~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 557 -------------PLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred -------------chhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 3456779999999999999999999999999999999999999999999999999999999999998
Q ss_pred c
Q 017532 323 V 323 (370)
Q Consensus 323 ~ 323 (370)
.
T Consensus 624 g 624 (638)
T KOG1126|consen 624 G 624 (638)
T ss_pred c
Confidence 5
No 24
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.68 E-value=6.4e-16 Score=140.24 Aligned_cols=259 Identities=16% Similarity=0.131 Sum_probs=102.1
Q ss_pred HhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCC
Q 017532 33 ASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPN 112 (370)
Q Consensus 33 ~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~ 112 (370)
.-...+.+.|++++|++.+.+..... ..|.+ ..+|...+.....+++++.|...++++...++....
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~--~~~~~-~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~---------- 79 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKI--APPDD-PEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQ---------- 79 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccc--ccccc-cccccccccccccccccccccccccccccccccccc----------
Confidence 44667889999999999886642221 12443 344444455566789999999999999765431100
Q ss_pred CCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHH
Q 017532 113 RTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNV 192 (370)
Q Consensus 113 ~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 192 (370)
...++ ..+ ...+++++|++.+....+..... ..+...+.++...+++++
T Consensus 80 -------~~~~l--~~l-~~~~~~~~A~~~~~~~~~~~~~~---------------------~~l~~~l~~~~~~~~~~~ 128 (280)
T PF13429_consen 80 -------DYERL--IQL-LQDGDPEEALKLAEKAYERDGDP---------------------RYLLSALQLYYRLGDYDE 128 (280)
T ss_dssp ---------------------------------------------------------------------H-HHHTT-HHH
T ss_pred -------ccccc--ccc-ccccccccccccccccccccccc---------------------chhhHHHHHHHHHhHHHH
Confidence 01121 122 46688888887665543222110 112234455667788888
Q ss_pred HHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCC
Q 017532 193 CFDLMNESIGRGN-GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKD 271 (370)
Q Consensus 193 A~~~~~~~l~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~ 271 (370)
+...++++....+ ..++..+..+|.++.+.|+.++|+..|++++++.|++ ..+...++.+++..|+
T Consensus 129 ~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~-------------~~~~~~l~~~li~~~~ 195 (280)
T PF13429_consen 129 AEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDD-------------PDARNALAWLLIDMGD 195 (280)
T ss_dssp HHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT--------------HHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------------HHHHHHHHHHHHHCCC
Confidence 8888888765441 2667777888888888888888888888888665442 3445667777888888
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHH
Q 017532 272 YVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTL 351 (370)
Q Consensus 272 ~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~l 351 (370)
++++.+.++......|.++..+..+|.++..+|++++|+..|+++++.+|++ ..++.+++.+++.. |..+.+..+
T Consensus 196 ~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d---~~~~~~~a~~l~~~--g~~~~A~~~ 270 (280)
T PF13429_consen 196 YDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD---PLWLLAYADALEQA--GRKDEALRL 270 (280)
T ss_dssp HHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT----HHHHHHHHHHHT-------------
T ss_pred hHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc---cccccccccccccc--ccccccccc
Confidence 8888777777777777777788888888888888888888888888888876 77777888777643 334444444
Q ss_pred HH
Q 017532 352 SS 353 (370)
Q Consensus 352 l~ 353 (370)
.+
T Consensus 271 ~~ 272 (280)
T PF13429_consen 271 RR 272 (280)
T ss_dssp --
T ss_pred cc
Confidence 43
No 25
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.68 E-value=1.8e-13 Score=142.69 Aligned_cols=166 Identities=14% Similarity=0.100 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
.+++.+...|++.|++++|+.+|+++.+.+-..+..++..+...+.+.|++++|.+.|+++.+. ...|+
T Consensus 615 ~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~----------G~~pd- 683 (1060)
T PLN03218 615 EVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ----------GIKLG- 683 (1060)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----------CCCCC-
Confidence 4566666677777777777777777766554345666666677777777777777777776632 12222
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHH
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERD-YNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNL 333 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~-p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl 333 (370)
...+..+...|.+.|++++|.+.|+++.+.. ..+..+|+.+..+|++.|++++|++.|+++....-.+ +...+..+
T Consensus 684 -~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P--d~~Ty~sL 760 (1060)
T PLN03218 684 -TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP--NTITYSIL 760 (1060)
T ss_pred -HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC--CHHHHHHH
Confidence 2345556667777788888888777776542 3356677777777888888888888887776553222 02222233
Q ss_pred HHHHHhccCCchhhHHHHHHHHh
Q 017532 334 CSMYELAYVNHSDIKRTLSSWIG 356 (370)
Q Consensus 334 ~~lyel~~~~~~~~~~~ll~~~~ 356 (370)
-..| +..+..+....++....
T Consensus 761 L~a~--~k~G~le~A~~l~~~M~ 781 (1060)
T PLN03218 761 LVAS--ERKDDADVGLDLLSQAK 781 (1060)
T ss_pred HHHH--HHCCCHHHHHHHHHHHH
Confidence 3333 23344555555555443
No 26
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1e-14 Score=135.90 Aligned_cols=145 Identities=15% Similarity=0.205 Sum_probs=126.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHH
Q 017532 179 CLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLV 258 (370)
Q Consensus 179 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~ 258 (370)
-+|.-|.++++++.|...|.+++.+.| .++..+..+|.+.+..+.+.+|..+|+.++...+... ...+.+ .-.
T Consensus 385 Ylgmey~~t~n~kLAe~Ff~~A~ai~P-~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~-----~e~~~w-~p~ 457 (611)
T KOG1173|consen 385 YLGMEYMRTNNLKLAEKFFKQALAIAP-SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVL-----NEKIFW-EPT 457 (611)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCC-CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcc-----ccccch-hHH
Confidence 466778889999999999999999999 9999999999999999999999999999985443321 112223 456
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHH
Q 017532 259 SRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLV 330 (370)
Q Consensus 259 ~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~ 330 (370)
+.|+|.++.+.+++++|+..|++++.+.|.++.++..+|.++..+|+++.|++.|.+++.++|++.....++
T Consensus 458 ~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL 529 (611)
T KOG1173|consen 458 LNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELL 529 (611)
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHH
Confidence 789999999999999999999999999999999999999999999999999999999999999874433333
No 27
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.66 E-value=1.9e-13 Score=140.43 Aligned_cols=293 Identities=12% Similarity=0.055 Sum_probs=199.6
Q ss_pred hHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCC
Q 017532 32 LASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYP 111 (370)
Q Consensus 32 ~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~ 111 (370)
......+...|+|.+|+.++.+++.. +|.+...+. ..+.++...|++++|...++++...++....
T Consensus 53 ~~lA~~~~~~g~~~~A~~~~~~al~~----~P~~~~a~~-~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~--------- 118 (765)
T PRK10049 53 AAVAVAYRNLKQWQNSLTLWQKALSL----EPQNDDYQR-GLILTLADAGQYDEALVKAKQLVSGAPDKAN--------- 118 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHH-HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---------
Confidence 44566788999999999999997543 576544443 3467889999999999999999766532211
Q ss_pred CCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHH-----------------------------------
Q 017532 112 NRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLAR----------------------------------- 156 (370)
Q Consensus 112 ~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~----------------------------------- 156 (370)
....+.+....|++.+|+..+..++...+.....
T Consensus 119 -----------~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~ 187 (765)
T PRK10049 119 -----------LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLE 187 (765)
T ss_pred -----------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHH
Confidence 1122333344555555555555443321100000
Q ss_pred ----------H------hhHhh---HHhHHHHHHHH-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 017532 157 ----------K------LAEKL---EESVKSWKKRE-------------IFVLNCLIGYHLSSKEYNVCFDLMNESIGRG 204 (370)
Q Consensus 157 ----------~------~~~~~---~~~~~~~~~~~-------------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 204 (370)
. ..+.. +.+++..+... ..+.......++..|++++|+..|+++++..
T Consensus 188 ~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~ 267 (765)
T PRK10049 188 ADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEG 267 (765)
T ss_pred HHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccC
Confidence 0 00000 11122111111 1222222334567899999999999999887
Q ss_pred CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHH
Q 017532 205 NGLDP-ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECI 283 (370)
Q Consensus 205 ~~~~~-~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l 283 (370)
+ ..+ .+...+|.+++..|++++|+.+|+++++..+.. ...+ ......++.++...|++++|+..++++.
T Consensus 268 ~-~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~------~~~~---~~~~~~L~~a~~~~g~~~eA~~~l~~~~ 337 (765)
T PRK10049 268 Q-IIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETI------ADLS---DEELADLFYSLLESENYPGALTVTAHTI 337 (765)
T ss_pred C-CCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCC------CCCC---hHHHHHHHHHHHhcccHHHHHHHHHHHh
Confidence 5 322 344556999999999999999999988543221 0000 2334557778899999999999999999
Q ss_pred hhCCC-------------C--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhH
Q 017532 284 ERDYN-------------D--IVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIK 348 (370)
Q Consensus 284 ~~~p~-------------~--~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~ 348 (370)
..+|. + ..++..+|.++...|++++|++.+++++...|++ ..++++++.++.- .+..++.
T Consensus 338 ~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n---~~l~~~lA~l~~~--~g~~~~A 412 (765)
T PRK10049 338 NNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGN---QGLRIDYASVLQA--RGWPRAA 412 (765)
T ss_pred hcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHh--cCCHHHH
Confidence 98763 2 3577899999999999999999999999999998 8899999999974 3447888
Q ss_pred HHHHHHHhhhCCCCCC
Q 017532 349 RTLSSWIGRVAPDDFD 364 (370)
Q Consensus 349 ~~ll~~~~~~~~d~~~ 364 (370)
...++.+....||+.+
T Consensus 413 ~~~l~~al~l~Pd~~~ 428 (765)
T PRK10049 413 ENELKKAEVLEPRNIN 428 (765)
T ss_pred HHHHHHHHhhCCCChH
Confidence 8888888888888744
No 28
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.3e-14 Score=132.19 Aligned_cols=248 Identities=15% Similarity=0.082 Sum_probs=187.2
Q ss_pred HHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHH
Q 017532 75 LALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKL 154 (370)
Q Consensus 75 ~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~ 154 (370)
.++-.+.+.+++......+.+..- +++ + .+....|.+.+...++++|+..|+++.+..+-.+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf---------------~~~--~-~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl 296 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGF---------------PNS--M-YIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRL 296 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccC---------------Ccc--H-HHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcc
Confidence 455566677777776666533210 111 1 1233456667888999999999999876633222
Q ss_pred HH---H-----------hhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 017532 155 AR---K-----------LAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQM 220 (370)
Q Consensus 155 ~~---~-----------~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~ 220 (370)
.. . +...+...+-.-.+-..++...+|+.|.-.++.+.|+.+|+++++++| ....+|..+|.=|+
T Consensus 297 ~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyv 375 (559)
T KOG1155|consen 297 DDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYV 375 (559)
T ss_pred hhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHH
Confidence 11 0 000000000000011145667888999999999999999999999999 99999999999999
Q ss_pred HcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 017532 221 QVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCL 300 (370)
Q Consensus 221 ~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~ 300 (370)
.+.+...|++.|.+|++++|. . -.+|+.+|..|-.++.+.=|+-+|+++++..|+|+..|..+|.||
T Consensus 376 EmKNt~AAi~sYRrAvdi~p~------------D-yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY 442 (559)
T KOG1155|consen 376 EMKNTHAAIESYRRAVDINPR------------D-YRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECY 442 (559)
T ss_pred HhcccHHHHHHHHHHHhcCch------------h-HHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 999999999999999965443 3 578999999999999999999999999999999999999999999
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhh
Q 017532 301 MYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRV 358 (370)
Q Consensus 301 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~ 358 (370)
.++++.++|+++|.+++...-.. ...++.|+.+||-.++ .++++..+...|...
T Consensus 443 ~kl~~~~eAiKCykrai~~~dte---~~~l~~LakLye~l~d-~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 443 EKLNRLEEAIKCYKRAILLGDTE---GSALVRLAKLYEELKD-LNEAAQYYEKYVEVS 496 (559)
T ss_pred HHhccHHHHHHHHHHHHhccccc---hHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHH
Confidence 99999999999999999987654 7889999999997666 336666665555544
No 29
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.66 E-value=1.2e-14 Score=121.68 Aligned_cols=206 Identities=14% Similarity=0.032 Sum_probs=165.1
Q ss_pred HHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 017532 123 RWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIG 202 (370)
Q Consensus 123 r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 202 (370)
|+-.+.-+...|++..|.+.+++.++..+... .++..++.+|...|+.+.|.+.|+++++
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~--------------------~a~~~~A~~Yq~~Ge~~~A~e~YrkAls 97 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYY--------------------LAHLVRAHYYQKLGENDLADESYRKALS 97 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH--------------------HHHHHHHHHHHHcCChhhHHHHHHHHHh
Confidence 43344444677888888888888876655443 4567889999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHH
Q 017532 203 RGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEEC 282 (370)
Q Consensus 203 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~ 282 (370)
+.| .+.+++++-|.-++.+|++++|...|++|+.. +..+.. ...+-|+|.|.+++|+++.|.++|+++
T Consensus 98 l~p-~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~----------P~Y~~~-s~t~eN~G~Cal~~gq~~~A~~~l~ra 165 (250)
T COG3063 98 LAP-NNGDVLNNYGAFLCAQGRPEEAMQQFERALAD----------PAYGEP-SDTLENLGLCALKAGQFDQAEEYLKRA 165 (250)
T ss_pred cCC-CccchhhhhhHHHHhCCChHHHHHHHHHHHhC----------CCCCCc-chhhhhhHHHHhhcCCchhHHHHHHHH
Confidence 999 99999999999999999999999999999942 223333 778999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCCC
Q 017532 283 IERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDD 362 (370)
Q Consensus 283 l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d~ 362 (370)
++.+|+++.+.--++..+++.|++-.|..++++.....+-.+..-++-+.++... +.......+-..+.+.-|..
T Consensus 166 L~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~-----gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 166 LELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRL-----GDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHhCCCc
Confidence 9999999999999999999999999999999998877664322233334444443 23566666766676666655
Q ss_pred CCC
Q 017532 363 FDS 365 (370)
Q Consensus 363 ~~~ 365 (370)
.+.
T Consensus 241 ~e~ 243 (250)
T COG3063 241 EEY 243 (250)
T ss_pred HHH
Confidence 443
No 30
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.66 E-value=2.6e-14 Score=125.83 Aligned_cols=276 Identities=16% Similarity=0.161 Sum_probs=190.9
Q ss_pred CCCCcCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcc
Q 017532 24 SLNDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQY 103 (370)
Q Consensus 24 ~~~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~ 103 (370)
++.||..-......++..|++..|+..|-.+ +..+|++-++.+. |+..++.+|+...|+.++.++..+-+ +++
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaA----ve~dp~~Y~aifr-RaT~yLAmGksk~al~Dl~rVlelKp-DF~- 106 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAA----VEGDPNNYQAIFR-RATVYLAMGKSKAALQDLSRVLELKP-DFM- 106 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH----HcCCchhHHHHHH-HHHHHhhhcCCccchhhHHHHHhcCc-cHH-
Confidence 6678888888899999999999999888775 4457875343333 57778888888888888888866542 221
Q ss_pred cccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHH------H---H--------------HHHhhH
Q 017532 104 ETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVRE------K---L--------------ARKLAE 160 (370)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~------~---~--------------~~~~~~ 160 (370)
.-|+-.+.+....|..++|...|..++...+. . + .....+
T Consensus 107 -----------------~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~G 169 (504)
T KOG0624|consen 107 -----------------AARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSG 169 (504)
T ss_pred -----------------HHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCC
Confidence 12444444556677777777777665533110 0 0 000011
Q ss_pred hhHHhHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 017532 161 KLEESVKSWKKRE------IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNR 234 (370)
Q Consensus 161 ~~~~~~~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 234 (370)
....+++.....+ +..+..++.+|...|+...||..++.+-++.. ++...++.++.++...||.+.++....+
T Consensus 170 D~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRE 248 (504)
T KOG0624|consen 170 DCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRE 248 (504)
T ss_pred chhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 1111222221111 45566778888888888888888888888877 8888888888888888888888877777
Q ss_pred HHHHhhcCCc-------------------------------cCCc---cchHH---HHHHHHHhHHHHHHHcCCHHHHHH
Q 017532 235 VEEMLNEGKF-------------------------------EDGL---LSEVE---FRNLVSRNKALIYLVGKDYVSAVR 277 (370)
Q Consensus 235 a~~l~~~~~~-------------------------------~~~~---~~~p~---~~~~~~~~~g~~~~~~g~~~eA~~ 277 (370)
.+++.++... ..+. ..+|+ ++......+..|+...|++.+|+.
T Consensus 249 CLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiq 328 (504)
T KOG0624|consen 249 CLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQ 328 (504)
T ss_pred HHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHH
Confidence 6655554311 0000 11111 112223346778888999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcc
Q 017532 278 EYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVA 324 (370)
Q Consensus 278 ~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~ 324 (370)
.+.+++..+|+|..++..+|.+|+-...||+||..|++|.+.++++.
T Consensus 329 qC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 329 QCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 99999999999999999999999999999999999999999999873
No 31
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.66 E-value=4.3e-14 Score=123.33 Aligned_cols=169 Identities=20% Similarity=0.219 Sum_probs=144.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
...++.+|..+...|++++|+..++++++..| .+..++..+|.++...|++++|++.|++++++.+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----------- 98 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN----------- 98 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----------
Confidence 35667899999999999999999999999999 889999999999999999999999999999754331
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHH
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERD--YNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVV 331 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~--p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~ 331 (370)
...+.++|.+++..|++++|++.|++++... |.....+.++|.++...|++++|+..+++++..+|.. ....+
T Consensus 99 --~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~ 173 (234)
T TIGR02521 99 --GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR---PESLL 173 (234)
T ss_pred --HHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC---hHHHH
Confidence 4467889999999999999999999999853 5667889999999999999999999999999999986 66788
Q ss_pred HHHHHHHhccCCchhhHHHHHHHHhhhCCC
Q 017532 332 NLCSMYELAYVNHSDIKRTLSSWIGRVAPD 361 (370)
Q Consensus 332 nl~~lyel~~~~~~~~~~~ll~~~~~~~~d 361 (370)
.++.+|.. .+..+....+++......++
T Consensus 174 ~la~~~~~--~~~~~~A~~~~~~~~~~~~~ 201 (234)
T TIGR02521 174 ELAELYYL--RGQYKDARAYLERYQQTYNQ 201 (234)
T ss_pred HHHHHHHH--cCCHHHHHHHHHHHHHhCCC
Confidence 89988874 34467777777766555443
No 32
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.65 E-value=4.7e-13 Score=139.54 Aligned_cols=289 Identities=6% Similarity=-0.043 Sum_probs=210.5
Q ss_pred CChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCC
Q 017532 30 PDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHI 109 (370)
Q Consensus 30 ~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~ 109 (370)
.....+..+++.|+++.|..++.++...+. .|+ ...++..+.++++.|++++|...++.|.....
T Consensus 439 Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl--~pD--~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv----------- 503 (1060)
T PLN03218 439 TFNMLMSVCASSQDIDGALRVLRLVQEAGL--KAD--CKLYTTLISTCAKSGKVDAMFEVFHEMVNAGV----------- 503 (1060)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHcCC--CCC--HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCC-----------
Confidence 344577888899999999999999877663 354 33344447889999999999999999853211
Q ss_pred CCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHH--------HHHHHHHH-hhHhhHHhHHHHHHHH-------
Q 017532 110 YPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDF--------VREKLARK-LAEKLEESVKSWKKRE------- 173 (370)
Q Consensus 110 ~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~--------~~~~~~~~-~~~~~~~~~~~~~~~~------- 173 (370)
.+..+.+..+...+ ...|+.++|+..+..+... +...+... ..+..+++.+++.++.
T Consensus 504 ------~PdvvTynaLI~gy-~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~ 576 (1060)
T PLN03218 504 ------EANVHTFGALIDGC-ARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPID 576 (1060)
T ss_pred ------CCCHHHHHHHHHHH-HHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCC
Confidence 11222334443332 6789999999888777432 12222211 2234445666666553
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccch
Q 017532 174 --IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSE 251 (370)
Q Consensus 174 --~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~ 251 (370)
..++..+...|.+.|++++|..+|+++.+.+...+...|+.+...|.+.|++++|.+.|+++.+. ...
T Consensus 577 PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~----------Gv~ 646 (1060)
T PLN03218 577 PDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK----------GVK 646 (1060)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----------CCC
Confidence 35788899999999999999999999999885478889999999999999999999999999852 234
Q ss_pred HHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHH
Q 017532 252 VEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD-YNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLV 330 (370)
Q Consensus 252 p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~-p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~ 330 (370)
|+ ...+..+...+.+.|++++|.+.|+++.+.+ +.+..+|+.+..+|.+.|++++|++.|+++.+....+. ...+
T Consensus 647 PD--~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd--vvty 722 (1060)
T PLN03218 647 PD--EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT--VSTM 722 (1060)
T ss_pred CC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--HHHH
Confidence 44 2355667778889999999999999999875 56788999999999999999999999999977543331 2333
Q ss_pred HHHHHHHHhccCCchhhHHHHHHHHh
Q 017532 331 VNLCSMYELAYVNHSDIKRTLSSWIG 356 (370)
Q Consensus 331 ~nl~~lyel~~~~~~~~~~~ll~~~~ 356 (370)
..|...| +..+..+++.+++....
T Consensus 723 N~LI~gy--~k~G~~eeAlelf~eM~ 746 (1060)
T PLN03218 723 NALITAL--CEGNQLPKALEVLSEMK 746 (1060)
T ss_pred HHHHHHH--HHCCCHHHHHHHHHHHH
Confidence 3344444 45666788888877654
No 33
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=5.4e-15 Score=132.97 Aligned_cols=257 Identities=14% Similarity=0.104 Sum_probs=184.5
Q ss_pred hHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCC
Q 017532 34 SLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNR 113 (370)
Q Consensus 34 ~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~ 113 (370)
.....+++.+|..|++.|..++... |.+ ..+|..|+..++.+++|++|.-+.+....+++...- .
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~----pd~-a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k--~-------- 119 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMC----PDN-ASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSK--G-------- 119 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhC----ccc-hhhhchhHHHHHHHHhHhhcccchhhheecCCCccc--c--------
Confidence 4556789999999999999987764 775 667778899999999999999998888776642211 0
Q ss_pred CCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHH---HHHhhHhhHHhHHHH--HHHHHHHHHHHHHHHHhcC
Q 017532 114 TGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKL---ARKLAEKLEESVKSW--KKREIFVLNCLIGYHLSSK 188 (370)
Q Consensus 114 ~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~~la~~~~~~g 188 (370)
. ...++...++..+.+........- ........+..+..- ......+...-+.++.-.|
T Consensus 120 ~----------------~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~ 183 (486)
T KOG0550|consen 120 Q----------------LREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLG 183 (486)
T ss_pred c----------------cchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcc
Confidence 0 111222222222211111111000 000000000000000 0011233446677888899
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHH
Q 017532 189 EYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLV 268 (370)
Q Consensus 189 ~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~ 268 (370)
++++|+..-..++++++ .+..+++..|.++...++.++|+.+|++++++.|+..........|.. ...+...|+-.++
T Consensus 184 ~~~~a~~ea~~ilkld~-~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~-le~~k~~gN~~fk 261 (486)
T KOG0550|consen 184 DYDEAQSEAIDILKLDA-TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKK-LEVKKERGNDAFK 261 (486)
T ss_pred cchhHHHHHHHHHhccc-chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHH-HHHHHhhhhhHhh
Confidence 99999999999999999 999999999999999999999999999999887764321112334444 7788899999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 269 GKDYVSAVREYEECIERDYNDI----VAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 269 ~g~~~eA~~~~~~~l~~~p~~~----~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
.|+|.+|.++|..+|.++|++. ..|.|+|.+..++|+..+|+..++.++.++|..
T Consensus 262 ~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy 320 (486)
T KOG0550|consen 262 NGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY 320 (486)
T ss_pred ccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH
Confidence 9999999999999999999754 679999999999999999999999999999986
No 34
>PRK12370 invasion protein regulator; Provisional
Probab=99.65 E-value=7e-14 Score=138.52 Aligned_cols=169 Identities=14% Similarity=0.099 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCc
Q 017532 174 IFVLNCLIGYHLS---------SKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKF 244 (370)
Q Consensus 174 ~~~~~~la~~~~~---------~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~ 244 (370)
..++..+|.++.. .+++++|+..++++++.+| +++.++..+|.++...|++++|+..|++++++.|+
T Consensus 295 a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~--- 370 (553)
T PRK12370 295 IAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH-NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI--- 370 (553)
T ss_pred HHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---
Confidence 4556666665542 3458999999999999999 99999999999999999999999999999976544
Q ss_pred cCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCc
Q 017532 245 EDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERV-PTV 323 (370)
Q Consensus 245 ~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~-p~~ 323 (370)
. ..++..+|.++...|++++|+..|+++++++|.++.+++.++.+++..|++++|+..+++++... |+.
T Consensus 371 ---------~-~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~ 440 (553)
T PRK12370 371 ---------S-ADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDN 440 (553)
T ss_pred ---------C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccC
Confidence 2 56788899999999999999999999999999999887778878888999999999999999886 555
Q ss_pred chhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCC
Q 017532 324 ALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPD 361 (370)
Q Consensus 324 ~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d 361 (370)
...+.+++.+|.. .+..+++...+..+....|+
T Consensus 441 ---~~~~~~la~~l~~--~G~~~eA~~~~~~~~~~~~~ 473 (553)
T PRK12370 441 ---PILLSMQVMFLSL--KGKHELARKLTKEISTQEIT 473 (553)
T ss_pred ---HHHHHHHHHHHHh--CCCHHHHHHHHHHhhhccch
Confidence 5677888988864 34466777776666555554
No 35
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=1.1e-13 Score=127.11 Aligned_cols=134 Identities=13% Similarity=0.083 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
..|.-++..|....+.++-...|+++..++| .++.+++..|.+++-++++++|+.-|++++++ +|+.
T Consensus 361 ~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L------------~pe~ 427 (606)
T KOG0547|consen 361 SLYIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEAIADFQKAISL------------DPEN 427 (606)
T ss_pred hHHHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc------------Chhh
Confidence 4477889999999999999999999999999 99999999999999999999999999999954 6666
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
...++.+|...+++++++++...|+.++...|+.+.+++..|.++...++|++|++.|++++++.|.
T Consensus 428 -~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 428 -AYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 8889999999999999999999999999999999999999999999999999999999999999998
No 36
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.64 E-value=5.1e-15 Score=120.21 Aligned_cols=121 Identities=14% Similarity=0.125 Sum_probs=104.6
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHH
Q 017532 194 FDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYV 273 (370)
Q Consensus 194 ~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~ 273 (370)
...++++++.+| ++ +..+|.++.+.|++++|+.+|++++.+ +|.. ..++.++|.++...|+++
T Consensus 13 ~~~~~~al~~~p-~~---~~~~g~~~~~~g~~~~A~~~~~~al~~------------~P~~-~~a~~~lg~~~~~~g~~~ 75 (144)
T PRK15359 13 EDILKQLLSVDP-ET---VYASGYASWQEGDYSRAVIDFSWLVMA------------QPWS-WRAHIALAGTWMMLKEYT 75 (144)
T ss_pred HHHHHHHHHcCH-HH---HHHHHHHHHHcCCHHHHHHHHHHHHHc------------CCCc-HHHHHHHHHHHHHHhhHH
Confidence 467888888888 43 567899999999999999999999954 3333 677899999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHH
Q 017532 274 SAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLC 334 (370)
Q Consensus 274 eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~ 334 (370)
+|+..|+++++.+|+++.+++++|.++...|++++|++.|+++++..|++ ...+.+.+
T Consensus 76 ~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~---~~~~~~~~ 133 (144)
T PRK15359 76 TAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYAD---ASWSEIRQ 133 (144)
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987 44444443
No 37
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.64 E-value=5.4e-14 Score=124.21 Aligned_cols=175 Identities=17% Similarity=0.140 Sum_probs=146.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccc
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDP---ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLS 250 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~---~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~ 250 (370)
...++.+|..++..|++++|+..+++++...| .++ .+++.+|.++...|++++|+..|+++++..+++
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~-------- 103 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYP-FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNH-------- 103 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC--------
Confidence 35678899999999999999999999999999 665 577999999999999999999999999876653
Q ss_pred hHHHHHHHHHhHHHHHHHc--------CCHHHHHHHHHHHHhhCCCCHHHH-----------------HHHHHHHHHhCC
Q 017532 251 EVEFRNLVSRNKALIYLVG--------KDYVSAVREYEECIERDYNDIVAI-----------------NNKALCLMYLRD 305 (370)
Q Consensus 251 ~p~~~~~~~~~~g~~~~~~--------g~~~eA~~~~~~~l~~~p~~~~~~-----------------~nla~~~~~~g~ 305 (370)
+.. ..+++.+|.+++.. |++++|++.|++++..+|++..+. .++|..+...|+
T Consensus 104 -~~~-~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~ 181 (235)
T TIGR03302 104 -PDA-DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGA 181 (235)
T ss_pred -Cch-HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 222 34678899999876 899999999999999999986432 367888999999
Q ss_pred HHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCC
Q 017532 306 LSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPD 361 (370)
Q Consensus 306 ~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d 361 (370)
+++|+..+++++...|+......++++++.+|....+ .++...+++.+....||
T Consensus 182 ~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~--~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 182 YVAAINRFETVVENYPDTPATEEALARLVEAYLKLGL--KDLAQDAAAVLGANYPD 235 (235)
T ss_pred hHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCC
Confidence 9999999999999988754447889999999986444 67777788877766654
No 38
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.64 E-value=5.9e-15 Score=129.09 Aligned_cols=228 Identities=11% Similarity=0.034 Sum_probs=184.0
Q ss_pred hhHHHHHHHcCcccCCccchHHHHHHHHHHHHHH-----HH-HH-hhHhhHHhHHHHHHHH------HHHHHHHHHHHHh
Q 017532 120 FSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREK-----LA-RK-LAEKLEESVKSWKKRE------IFVLNCLIGYHLS 186 (370)
Q Consensus 120 ~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~-----~~-~~-~~~~~~~~~~~~~~~~------~~~~~~la~~~~~ 186 (370)
|.+..-.++++..+|-+.+|...+...+...+-. +. .+ ..+++..+...+.+.+ ...+...+.++..
T Consensus 223 wwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 223 WWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHH
Confidence 3455566778888999999999887766442211 00 00 1233445556665555 4456678889999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHH
Q 017532 187 SKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIY 266 (370)
Q Consensus 187 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~ 266 (370)
++++++|.++|+.+++.+| .+.+++..+|..|+..|+++-|+.+|.+.+++.-. .| +.+.|+|.|+
T Consensus 303 m~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~---------sp----eLf~NigLCC 368 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ---------SP----ELFCNIGLCC 368 (478)
T ss_pred HHhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC---------Ch----HHHhhHHHHH
Confidence 9999999999999999999 99999999999999999999999999999987433 33 4588999999
Q ss_pred HHcCCHHHHHHHHHHHHhhC--CC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCC
Q 017532 267 LVGKDYVSAVREYEECIERD--YN-DIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVN 343 (370)
Q Consensus 267 ~~~g~~~eA~~~~~~~l~~~--p~-~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~ 343 (370)
+..++++-++..|++++..- |. -..+|+|+|-+....|++.-|...|+-++..+|++ ...+.||+.+-. .++
T Consensus 369 ~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h---~ealnNLavL~~--r~G 443 (478)
T KOG1129|consen 369 LYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH---GEALNNLAVLAA--RSG 443 (478)
T ss_pred HhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcch---HHHHHhHHHHHh--hcC
Confidence 99999999999999999764 33 34799999999999999999999999999999988 889999998854 456
Q ss_pred chhhHHHHHHHHhhhCCCCCCCc
Q 017532 344 HSDIKRTLSSWIGRVAPDDFDSS 366 (370)
Q Consensus 344 ~~~~~~~ll~~~~~~~~d~~~~~ 366 (370)
+-+.++.++..-..+.|+.+++.
T Consensus 444 ~i~~Arsll~~A~s~~P~m~E~~ 466 (478)
T KOG1129|consen 444 DILGARSLLNAAKSVMPDMAEVT 466 (478)
T ss_pred chHHHHHHHHHhhhhCccccccc
Confidence 67888889888888999988774
No 39
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=6.2e-14 Score=130.17 Aligned_cols=161 Identities=22% Similarity=0.297 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCc----
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGN--GLD----PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKF---- 244 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~--~~~----~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~---- 244 (370)
.-+++.+.+|+.+|.+.+.+..+.++++.+. +.+ ...+..+|..+..+|+++.|+.+|++++.-.+....
T Consensus 258 t~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~l 337 (539)
T KOG0548|consen 258 TYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKL 337 (539)
T ss_pred HHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHH
Confidence 3455667777777777777777777776654 111 123345677888899999999999997754332100
Q ss_pred ----------cCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 017532 245 ----------EDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLE 314 (370)
Q Consensus 245 ----------~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~ 314 (370)
.+..+.+|+. +.-....|..+|..|+|.+|+.+|.++|..+|+|+.+|.|+|.||.++|.+..|++.++
T Consensus 338 k~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~ 416 (539)
T KOG0548|consen 338 KEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAK 416 (539)
T ss_pred HHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 1122556766 66677789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCcchhHHHHHHHHHHHHh
Q 017532 315 NALERVPTVALNETLVVNLCSMYEL 339 (370)
Q Consensus 315 ~al~~~p~~~~~~~~~~nl~~lyel 339 (370)
.+++++|++ ....+--+.++..
T Consensus 417 ~~ieL~p~~---~kgy~RKg~al~~ 438 (539)
T KOG0548|consen 417 KCIELDPNF---IKAYLRKGAALRA 438 (539)
T ss_pred HHHhcCchH---HHHHHHHHHHHHH
Confidence 999999987 4444444444443
No 40
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.59 E-value=2.6e-13 Score=129.63 Aligned_cols=257 Identities=16% Similarity=0.132 Sum_probs=194.0
Q ss_pred HHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCc--ccchhHHHHHHHcCcccCCccchHHHHHHHH
Q 017532 70 LAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGS--MVPFSLRWLYAVLPIKLSNRQVGLDRFYELL 147 (370)
Q Consensus 70 ~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll 147 (370)
.++.+..+...|+|+.|...++...+.-. ...|. .+--.+....+.++..++++.+|+..|.+++
T Consensus 202 ~~~La~~y~~~g~~e~A~~l~k~Al~~l~-------------k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL 268 (508)
T KOG1840|consen 202 LRNLAEMYAVQGRLEKAEPLCKQALRILE-------------KTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEAL 268 (508)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHH-------------HccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 44445678999999999999988854310 00010 1111111124566688899999999999988
Q ss_pred HHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CC---HHHHHHHHHHHH
Q 017532 148 DFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNG----LD---PILVSKLGFIQM 220 (370)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~----~~---~~~~~~lg~~~~ 220 (370)
........... .+.+.++.+|+..|++.|+|++|..++++++++... .+ ...+..++.++.
T Consensus 269 ~i~e~~~G~~h------------~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~ 336 (508)
T KOG1840|consen 269 TIREEVFGEDH------------PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQ 336 (508)
T ss_pred HHHHHhcCCCC------------HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHH
Confidence 66555443221 123578889999999999999999999999876541 22 245688899999
Q ss_pred HcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHH
Q 017532 221 QVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD--------YNDIVA 292 (370)
Q Consensus 221 ~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~--------p~~~~~ 292 (370)
.++++++|..++++++++..+... ..++.. ...+.++|.+|+.+|+|.||.+.|++++.+. +.....
T Consensus 337 ~~~~~Eea~~l~q~al~i~~~~~g----~~~~~~-a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~ 411 (508)
T KOG1840|consen 337 SMNEYEEAKKLLQKALKIYLDAPG----EDNVNL-AKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKP 411 (508)
T ss_pred HhcchhHHHHHHHHHHHHHHhhcc----ccchHH-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHH
Confidence 999999999999999988764322 445566 7889999999999999999999999999873 344578
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHh----CCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhh
Q 017532 293 INNKALCLMYLRDLSDSIKVLENALER----VPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRV 358 (370)
Q Consensus 293 ~~nla~~~~~~g~~~~A~~~l~~al~~----~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~ 358 (370)
++++|..+...+++.+|...|++++.+ .|+.........||+.+|.- .+..+++.++.+.+.++
T Consensus 412 l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~--~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 412 LNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRA--QGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH--cccHHHHHHHHHHHHHH
Confidence 999999999999999999999998765 34443346778899999984 55589999999888654
No 41
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.59 E-value=1.4e-13 Score=117.67 Aligned_cols=124 Identities=11% Similarity=0.105 Sum_probs=113.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHH
Q 017532 187 SKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIY 266 (370)
Q Consensus 187 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~ 266 (370)
.++.++++..++++++.+| ++...|..+|.++...|++++|+..|++++++.+++ ..++.++|.++
T Consensus 52 ~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~-------------~~~~~~lA~aL 117 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGEN-------------AELYAALATVL 117 (198)
T ss_pred chhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------------HHHHHHHHHHH
Confidence 5778999999999999999 999999999999999999999999999999775542 56678899875
Q ss_pred -HHcCC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcc
Q 017532 267 -LVGKD--YVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVA 324 (370)
Q Consensus 267 -~~~g~--~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~ 324 (370)
...|+ +++|...++++++.+|+++.+++++|.++...|++++|+..|+++++..|...
T Consensus 118 ~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 118 YYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 67788 59999999999999999999999999999999999999999999999998753
No 42
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.59 E-value=3.8e-13 Score=122.79 Aligned_cols=237 Identities=11% Similarity=-0.022 Sum_probs=161.7
Q ss_pred CChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCcccchh
Q 017532 42 GSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFS 121 (370)
Q Consensus 42 g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (370)
+..+.++..+.+++... ..+|.+...++..++..+..+|++++|...++++..+++... ..
T Consensus 40 ~~~e~~i~~~~~~l~~~-~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~------------------~a 100 (296)
T PRK11189 40 LQQEVILARLNQILASR-DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMA------------------DA 100 (296)
T ss_pred hHHHHHHHHHHHHHccc-cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH------------------HH
Confidence 45566776666665432 234544344555678899999999999999999977664111 11
Q ss_pred HHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 017532 122 LRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESI 201 (370)
Q Consensus 122 ~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 201 (370)
....+.+....|++++|+..+...++..+.. ..++.++|.++...|++++|+..+++++
T Consensus 101 -~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~--------------------~~a~~~lg~~l~~~g~~~eA~~~~~~al 159 (296)
T PRK11189 101 -YNYLGIYLTQAGNFDAAYEAFDSVLELDPTY--------------------NYAYLNRGIALYYGGRYELAQDDLLAFY 159 (296)
T ss_pred -HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1223444577899999998887776433221 1456789999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHH
Q 017532 202 GRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEE 281 (370)
Q Consensus 202 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~ 281 (370)
+.+| +++..... ..+....+++++|+..|+++.... +++. | ..+.+.+..|++.++ +.++.
T Consensus 160 ~~~P-~~~~~~~~-~~l~~~~~~~~~A~~~l~~~~~~~-----------~~~~----~-~~~~~~~~lg~~~~~-~~~~~ 220 (296)
T PRK11189 160 QDDP-NDPYRALW-LYLAESKLDPKQAKENLKQRYEKL-----------DKEQ----W-GWNIVEFYLGKISEE-TLMER 220 (296)
T ss_pred HhCC-CCHHHHHH-HHHHHccCCHHHHHHHHHHHHhhC-----------Cccc----c-HHHHHHHHccCCCHH-HHHHH
Confidence 9999 77632222 234456789999999998876321 1111 1 135666667776544 23333
Q ss_pred H-------HhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHH
Q 017532 282 C-------IERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPT-VALNETLVVNLCSMY 337 (370)
Q Consensus 282 ~-------l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~-~~~~~~~~~nl~~ly 337 (370)
+ ++++|....+|+++|.++...|++++|+.+|+++++.+|. +......++.+..+.
T Consensus 221 ~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~ 284 (296)
T PRK11189 221 LKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALLG 284 (296)
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence 3 3556777889999999999999999999999999999974 322233344444443
No 43
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.58 E-value=1.3e-13 Score=135.63 Aligned_cols=260 Identities=14% Similarity=0.149 Sum_probs=154.6
Q ss_pred CCCCcCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcc
Q 017532 24 SLNDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQY 103 (370)
Q Consensus 24 ~~~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~ 103 (370)
+|++++.......-++..|+|..|+.+|.+++.+ +|.-......-.+.|+.++|+.+.|...|.++..|++..+
T Consensus 160 sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~i----np~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v-- 233 (1018)
T KOG2002|consen 160 SPDNILALLGKARIAYNKKDYRGALKYYKKALRI----NPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCV-- 233 (1018)
T ss_pred CCcchHHHHHHHHHHhccccHHHHHHHHHHHHhc----CcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhH--
Confidence 7788888888888888999999999999887544 3431111111125678899999999999988877774111
Q ss_pred cccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHH
Q 017532 104 ETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGY 183 (370)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 183 (370)
+.+ +.++.+-....+. +.+...+....+....... -+.++..|++.
T Consensus 234 -----------~al------v~L~~~~l~~~d~----~s~~~~~~ll~~ay~~n~~-------------nP~~l~~LAn~ 279 (1018)
T KOG2002|consen 234 -----------SAL------VALGEVDLNFNDS----DSYKKGVQLLQRAYKENNE-------------NPVALNHLANH 279 (1018)
T ss_pred -----------HHH------HHHHHHHHHccch----HHHHHHHHHHHHHHhhcCC-------------CcHHHHHHHHH
Confidence 000 0111110111111 1111111111111111000 02455666677
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHH
Q 017532 184 HLSSKEYNVCFDLMNESIGRGNGLDP---ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSR 260 (370)
Q Consensus 184 ~~~~g~~~~A~~~~~~~l~~~~~~~~---~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~ 260 (370)
++-.|+|..+..+...++.... ..+ ..++.+|+.|..+|++++|..+|.++....+++ + ...+.
T Consensus 280 fyfK~dy~~v~~la~~ai~~t~-~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~-----------~-~l~~~ 346 (1018)
T KOG2002|consen 280 FYFKKDYERVWHLAEHAIKNTE-NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN-----------F-VLPLV 346 (1018)
T ss_pred HhhcccHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC-----------c-ccccc
Confidence 7777777777777777666543 222 346677777777777777777777776432221 1 34455
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 017532 261 NKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLR----DLSDSIKVLENALERVPTVALNETLVVNLCSM 336 (370)
Q Consensus 261 ~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g----~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~l 336 (370)
.+|..++..|++++|+.+|++++...|++..+...+|..|...+ ..+.|..++.++++..|.+ ...+.+++.+
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d---~~a~l~laql 423 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVD---SEAWLELAQL 423 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhccccc---HHHHHHHHHH
Confidence 66777777777777777777777777777777777776666654 5667777777777776665 6666777777
Q ss_pred HHh
Q 017532 337 YEL 339 (370)
Q Consensus 337 yel 339 (370)
||.
T Consensus 424 ~e~ 426 (1018)
T KOG2002|consen 424 LEQ 426 (1018)
T ss_pred HHh
Confidence 763
No 44
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.58 E-value=2e-12 Score=131.97 Aligned_cols=289 Identities=10% Similarity=-0.025 Sum_probs=207.2
Q ss_pred CCcCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccc
Q 017532 26 NDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYET 105 (370)
Q Consensus 26 ~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~ 105 (370)
.|+......+..+++.|++++|.++++++. .| +..+ |+..+.++++.|++++|...|+.|....-
T Consensus 257 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~------~~-~~vt-~n~li~~y~~~g~~~eA~~lf~~M~~~g~------- 321 (697)
T PLN03081 257 GDTFVSCALIDMYSKCGDIEDARCVFDGMP------EK-TTVA-WNSMLAGYALHGYSEEALCLYYEMRDSGV------- 321 (697)
T ss_pred ccceeHHHHHHHHHHCCCHHHHHHHHHhCC------CC-ChhH-HHHHHHHHHhCCCHHHHHHHHHHHHHcCC-------
Confidence 345555667889999999999999998863 12 2334 44458889999999999999999843210
Q ss_pred cCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHH--------HHHHHHH-hhHhhHHhHHHHHHHH---
Q 017532 106 YPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFV--------REKLARK-LAEKLEESVKSWKKRE--- 173 (370)
Q Consensus 106 ~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~--------~~~~~~~-~~~~~~~~~~~~~~~~--- 173 (370)
.+..+.+..+...+ ...|..++|...+..+.+.. ...+... +.+..+++.+++.+..
T Consensus 322 ----------~pd~~t~~~ll~a~-~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d 390 (697)
T PLN03081 322 ----------SIDQFTFSIMIRIF-SRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKN 390 (697)
T ss_pred ----------CCCHHHHHHHHHHH-HhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCC
Confidence 11222333333222 66788888887776665431 1111111 2234455666665543
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
..+++.++..|.+.|+.++|+.+|+++.+.+...+..++..+...+.+.|++++|.++|+.+.+.. ...|+
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~---------g~~p~ 461 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENH---------RIKPR 461 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc---------CCCCC
Confidence 567889999999999999999999999987766788889999999999999999999999997421 22343
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHH
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNL 333 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl 333 (370)
...+..+...+.+.|++++|.+.++++- . ..+..+|+.+..++...|+++.|...++++++..|+. ......|
T Consensus 462 --~~~y~~li~~l~r~G~~~eA~~~~~~~~-~-~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~---~~~y~~L 534 (697)
T PLN03081 462 --AMHYACMIELLGREGLLDEAYAMIRRAP-F-KPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEK---LNNYVVL 534 (697)
T ss_pred --ccchHhHHHHHHhcCCHHHHHHHHHHCC-C-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCC---CcchHHH
Confidence 2345667888889999999999988752 2 3456789999999999999999999999999999976 3445556
Q ss_pred HHHHHhccCCchhhHHHHHHHHhhh
Q 017532 334 CSMYELAYVNHSDIKRTLSSWIGRV 358 (370)
Q Consensus 334 ~~lyel~~~~~~~~~~~ll~~~~~~ 358 (370)
..+|. ..+.-+...++.+...+.
T Consensus 535 ~~~y~--~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 535 LNLYN--SSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHH--hCCCHHHHHHHHHHHHHc
Confidence 66665 345567777777766543
No 45
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.57 E-value=6.6e-13 Score=121.22 Aligned_cols=130 Identities=15% Similarity=0.049 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
..++.+|.++...|++++|+..|+++++.+| +++.+++.+|.++...|++++|+..|++++++.|+ .
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~------------~ 131 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT------------Y 131 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------------C
Confidence 5678899999999999999999999999999 99999999999999999999999999999976444 3
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
..++.++|.++...|++++|++.|+++++.+|+++.....+ ......+++++|+..+++++..
T Consensus 132 -~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~-~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 132 -NYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWL-YLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHccCCHHHHHHHHHHHHhh
Confidence 66789999999999999999999999999999998422222 2234567889999999776654
No 46
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.3e-12 Score=119.27 Aligned_cols=132 Identities=14% Similarity=-0.001 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
..++..+|.-|+++++-..|+..|+++++++| .|..+|+.||+.|.-++.+.=|.-+|++|..+.|.
T Consensus 364 ~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p-~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn------------ 430 (559)
T KOG1155|consen 364 LSAWTLMGHEYVEMKNTHAAIESYRRAVDINP-RDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN------------ 430 (559)
T ss_pred hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCc-hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC------------
Confidence 56778999999999999999999999999999 99999999999999999999999999999965444
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
. ...|..+|.||.+.++.++|+++|.+++..+..+..++..+|.++.+.++.++|..+|++-++.
T Consensus 431 D-sRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 431 D-SRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred c-hHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 2 6678899999999999999999999999998888999999999999999999999999999883
No 47
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.57 E-value=1.4e-14 Score=131.47 Aligned_cols=226 Identities=14% Similarity=0.110 Sum_probs=107.4
Q ss_pred HHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCC
Q 017532 36 QDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTG 115 (370)
Q Consensus 36 ~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 115 (370)
......|+++.|+..|++++..+ |.+.... .+...+...+++++|...+...-... +
T Consensus 52 ~La~~~~~~~~A~~ay~~l~~~~----~~~~~~~--~~l~~l~~~~~~~~A~~~~~~~~~~~-----------------~ 108 (280)
T PF13429_consen 52 DLAWSLGDYDEAIEAYEKLLASD----KANPQDY--ERLIQLLQDGDPEEALKLAEKAYERD-----------------G 108 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccc----ccccccc--cccccccccccccccccccccccccc-----------------c
Confidence 34456899999999999976543 3321222 22344468899999998775542111 0
Q ss_pred cccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 017532 116 SMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFD 195 (370)
Q Consensus 116 ~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 195 (370)
... .+.. ...+....|+..++.+.+..+..... .... ..++..+|.++.+.|++++|+.
T Consensus 109 ~~~--~l~~-~l~~~~~~~~~~~~~~~l~~~~~~~~----------~~~~--------~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 109 DPR--YLLS-ALQLYYRLGDYDEAEELLEKLEELPA----------APDS--------ARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------H-HHHTT-HHHHHHHHHHHHH-T-------------T---------HHHHHHHHHHHHHCCHHHHHHH
T ss_pred ccc--hhhH-HHHHHHHHhHHHHHHHHHHHHHhccC----------CCCC--------HHHHHHHHHHHHHcCCHHHHHH
Confidence 100 1111 11222445666666655555431100 0011 2456688999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHH
Q 017532 196 LMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSA 275 (370)
Q Consensus 196 ~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA 275 (370)
.|+++++.+| +++.+...++.++...|+.+++.+.++......+.+ ...+..+|.+++..|++++|
T Consensus 168 ~~~~al~~~P-~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~-------------~~~~~~la~~~~~lg~~~~A 233 (280)
T PF13429_consen 168 DYRKALELDP-DDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDD-------------PDLWDALAAAYLQLGRYEEA 233 (280)
T ss_dssp HHHHHHHH-T-T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTS-------------CCHCHHHHHHHHHHT-HHHH
T ss_pred HHHHHHHcCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCH-------------HHHHHHHHHHhccccccccc
Confidence 9999999999 999999999999999999999888888887654332 23456689999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 276 VREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 276 ~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
+.+|++++..+|+|+..+.++|.++...|+.++|..+..++++.
T Consensus 234 l~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 234 LEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999988753
No 48
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.56 E-value=2.2e-13 Score=110.58 Aligned_cols=113 Identities=7% Similarity=-0.088 Sum_probs=103.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHH
Q 017532 177 LNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRN 256 (370)
Q Consensus 177 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~ 256 (370)
++.+|.++...|++++|+..|++++..+| .+..++..+|.++...|++++|+..|++++++.++ . .
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~------------~-~ 92 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS------------H-P 92 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC------------C-c
Confidence 45678899999999999999999999999 99999999999999999999999999999975443 2 6
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 017532 257 LVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYL 303 (370)
Q Consensus 257 ~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~ 303 (370)
.++.++|.++...|++++|+..|++++..+|+++..+.+++.+....
T Consensus 93 ~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 93 EPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999877654
No 49
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.54 E-value=2.5e-12 Score=123.00 Aligned_cols=256 Identities=15% Similarity=0.084 Sum_probs=188.1
Q ss_pred hHHHHHHcCChHHHHHHHHHhhhccc----cCCchHHHHHH-HHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCC
Q 017532 34 SLQDLATRGSWRTIIDNVSRARSQSL----LTQPHHHLTYL-AYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPH 108 (370)
Q Consensus 34 ~l~~l~~~g~~~~Ai~~~~~~~~~~~----~~~P~~~~~~~-~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~ 108 (370)
.......+|+|+.|+.+++.+++.-- ...|. +... ..-+..|..+++|++|...++++..+....
T Consensus 205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~--va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~-------- 274 (508)
T KOG1840|consen 205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLV--VASMLNILALVYRSLGKYDEAVNLYEEALTIREEV-------- 274 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHH--HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh--------
Confidence 66778899999999999999876511 12332 2222 223567999999999999999986543211
Q ss_pred CCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 017532 109 IYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSK 188 (370)
Q Consensus 109 ~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 188 (370)
++... ..+...+.- .+.+++..|++.+|...+..++.......... ..+....+.+++.++..++
T Consensus 275 -~G~~h-~~va~~l~n-La~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~------------~~~v~~~l~~~~~~~~~~~ 339 (508)
T KOG1840|consen 275 -FGEDH-PAVAATLNN-LAVLYYKQGKFAEAEEYCERALEIYEKLLGAS------------HPEVAAQLSELAAILQSMN 339 (508)
T ss_pred -cCCCC-HHHHHHHHH-HHHHHhccCChHHHHHHHHHHHHHHHHhhccC------------hHHHHHHHHHHHHHHHHhc
Confidence 11111 112222221 24556889999999999888877666532111 1123456778999999999
Q ss_pred CHHHHHHHHHHHHhCCC----CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHh
Q 017532 189 EYNVCFDLMNESIGRGN----GLD---PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRN 261 (370)
Q Consensus 189 ~~~~A~~~~~~~l~~~~----~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~ 261 (370)
++++|+.++++++++.. .++ +.+..++|.+|..+|++++|.++|++++.+.+.... ..++.. ...+.+
T Consensus 340 ~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~----~~~~~~-~~~l~~ 414 (508)
T KOG1840|consen 340 EYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLG----KKDYGV-GKPLNQ 414 (508)
T ss_pred chhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccc----CcChhh-hHHHHH
Confidence 99999999999976542 133 356789999999999999999999999998766422 335554 667788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhh-------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 262 KALIYLVGKDYVSAVREYEECIER-------DYNDIVAINNKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 262 ~g~~~~~~g~~~eA~~~~~~~l~~-------~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
+|..+...+++.+|...|.+++.+ +|+...++.|||.+|..+|++++|+++.++++..
T Consensus 415 la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 415 LAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 999999999999999999998776 3455678999999999999999999999999843
No 50
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.54 E-value=8.4e-12 Score=109.43 Aligned_cols=273 Identities=16% Similarity=0.138 Sum_probs=191.9
Q ss_pred CCCCcCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcc
Q 017532 24 SLNDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQY 103 (370)
Q Consensus 24 ~~~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~ 103 (370)
+.+.+|.++-....+.-+.+-++||+++-.+.+ .+|....+.+++ +..+-+-|..+.|+..-+.+.+ +|++
T Consensus 31 qa~~lsr~Yv~GlNfLLs~Q~dKAvdlF~e~l~----~d~~t~e~~ltL-GnLfRsRGEvDRAIRiHQ~L~~--spdl-- 101 (389)
T COG2956 31 QANRLSRDYVKGLNFLLSNQPDKAVDLFLEMLQ----EDPETFEAHLTL-GNLFRSRGEVDRAIRIHQTLLE--SPDL-- 101 (389)
T ss_pred HHhhccHHHHhHHHHHhhcCcchHHHHHHHHHh----cCchhhHHHHHH-HHHHHhcchHHHHHHHHHHHhc--CCCC--
Confidence 446677766667777778899999999988755 356644444554 6778888999999998877742 2332
Q ss_pred cccCCCCCCCCCcccchhHHHHH----HHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHH
Q 017532 104 ETYPHIYPNRTGSMVPFSLRWLY----AVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNC 179 (370)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~r~l~----a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (370)
+|.-|++. ++=+...|-.+.|.+.|..+....... ..++-.
T Consensus 102 ---------------T~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa--------------------~~Alqq 146 (389)
T COG2956 102 ---------------TFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFA--------------------EGALQQ 146 (389)
T ss_pred ---------------chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhh--------------------HHHHHH
Confidence 22333321 111244566666666555543211110 123346
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 180 LIGYHLSSKEYNVCFDLMNESIGRGNGLD-----PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 180 la~~~~~~g~~~~A~~~~~~~l~~~~~~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
|..+|...++|++|+..-+++.+.++ .. +..+..++..+....+++.|...+.+|++. +|..
T Consensus 147 Ll~IYQ~treW~KAId~A~~L~k~~~-q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa------------~~~c 213 (389)
T COG2956 147 LLNIYQATREWEKAIDVAERLVKLGG-QTYRVEIAQFYCELAQQALASSDVDRARELLKKALQA------------DKKC 213 (389)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHcCC-ccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh------------Cccc
Confidence 77888899999999999999988887 32 234567888888899999999999999953 4444
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHH
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI-VAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNL 333 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~-~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl 333 (370)
+.+.+.+|.+.+..|+|+.|++.++.+++.||... .+...+..||...|+.++.+..+.++++..+.. .+..-+
T Consensus 214 -vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~----~~~l~l 288 (389)
T COG2956 214 -VRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA----DAELML 288 (389)
T ss_pred -eehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc----cHHHHH
Confidence 66777899999999999999999999999998865 678888899999999999999999999988874 344444
Q ss_pred HHHHHhccCCchhhHHHHHHHHhhhC
Q 017532 334 CSMYELAYVNHSDIKRTLSSWIGRVA 359 (370)
Q Consensus 334 ~~lyel~~~~~~~~~~~ll~~~~~~~ 359 (370)
+.+.+. .++..++...+-+++.+.|
T Consensus 289 ~~lie~-~~G~~~Aq~~l~~Ql~r~P 313 (389)
T COG2956 289 ADLIEL-QEGIDAAQAYLTRQLRRKP 313 (389)
T ss_pred HHHHHH-hhChHHHHHHHHHHHhhCC
Confidence 454443 3455555566666666554
No 51
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.54 E-value=5.2e-13 Score=107.27 Aligned_cols=115 Identities=19% Similarity=0.161 Sum_probs=106.0
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHH
Q 017532 195 DLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVS 274 (370)
Q Consensus 195 ~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~e 274 (370)
..+++++..+| .+......+|..+...|++++|+..|++++.+.+. . ..++.++|.+++..|++++
T Consensus 4 ~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~------------~-~~~~~~la~~~~~~~~~~~ 69 (135)
T TIGR02552 4 ATLKDLLGLDS-EQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY------------N-SRYWLGLAACCQMLKEYEE 69 (135)
T ss_pred hhHHHHHcCCh-hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC------------c-HHHHHHHHHHHHHHHHHHH
Confidence 46788999999 88899999999999999999999999999865333 2 5678889999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 275 AVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 275 A~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
|+..|++++..+|.++..++++|.++...|++++|+..++++++.+|+.
T Consensus 70 A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 70 AIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGEN 118 (135)
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999999999999986
No 52
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.53 E-value=3.4e-13 Score=126.27 Aligned_cols=244 Identities=15% Similarity=0.107 Sum_probs=177.0
Q ss_pred CCCcCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCccc
Q 017532 25 LNDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYE 104 (370)
Q Consensus 25 ~~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~ 104 (370)
-.|.|.-+.+...+++.|+..+|+=.++.++. .+|.+...|.+ .+......++=..|+..+++..++++...
T Consensus 282 ~~~~pdPf~eG~~lm~nG~L~~A~LafEAAVk----qdP~haeAW~~-LG~~qaENE~E~~ai~AL~rcl~LdP~Nl--- 353 (579)
T KOG1125|consen 282 YIDHPDPFKEGCNLMKNGDLSEAALAFEAAVK----QDPQHAEAWQK-LGITQAENENEQNAISALRRCLELDPTNL--- 353 (579)
T ss_pred ccCCCChHHHHHHHHhcCCchHHHHHHHHHHh----hChHHHHHHHH-hhhHhhhccchHHHHHHHHHHHhcCCccH---
Confidence 47888899999999999999999988888654 47986555544 47788888888889999999988875221
Q ss_pred ccCCCCCCCCCcccchhHHHH--HHHcCcccCCccchHHHHHHHHHHHHHHHHHH--hhHhhHHhHHHHHHHHHHHHHHH
Q 017532 105 TYPHIYPNRTGSMVPFSLRWL--YAVLPIKLSNRQVGLDRFYELLDFVREKLARK--LAEKLEESVKSWKKREIFVLNCL 180 (370)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~r~l--~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l 180 (370)
.++ +|..+...|.-.+|+..|+.=+..-....... ......... +
T Consensus 354 ------------------eaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~---~---------- 402 (579)
T KOG1125|consen 354 ------------------EALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT---K---------- 402 (579)
T ss_pred ------------------HHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCC---c----------
Confidence 222 22234556666777777766543322211100 000000000 0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHH
Q 017532 181 IGYHLSSKEYNVCFDLMNESIGRGN-GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVS 259 (370)
Q Consensus 181 a~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~ 259 (370)
.+.....+..-..+|-.+....| ..++++...||-+|.-.|+|++|+.+|+.|+.. +|+. ...|
T Consensus 403 --s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v------------~Pnd-~~lW 467 (579)
T KOG1125|consen 403 --SFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV------------KPND-YLLW 467 (579)
T ss_pred --CCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhc------------CCch-HHHH
Confidence 00000111222344444544445 368899999999999999999999999999954 4555 7789
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 260 RNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 260 ~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
.-+|-++....+.+|||..|++++++.|....+++|+|++++.+|-|++|+++|-.|+.+.++
T Consensus 468 NRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 468 NRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred HHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999999999999999999999999999999776
No 53
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.52 E-value=5.7e-12 Score=126.00 Aligned_cols=188 Identities=12% Similarity=-0.063 Sum_probs=149.4
Q ss_pred ccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHH-----hhHhhHHhHHHHHH--HHHHHHHHHHHHHHhcCC
Q 017532 117 MVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARK-----LAEKLEESVKSWKK--REIFVLNCLIGYHLSSKE 189 (370)
Q Consensus 117 ~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~-----~~~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~ 189 (370)
+-|..+-.+.+.+ ...|..+++-.++.. ..++.+... ......+....-+. ....++.+||.+..+.|.
T Consensus 26 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~ 101 (694)
T PRK15179 26 SGPTILDLLEAAL-AEPGESEEAGRELLQ---QARQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHR 101 (694)
T ss_pred CCcHHHhHHHHHh-cCcccchhHHHHHHH---HHHHHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCC
Confidence 4566666655544 666777776655433 333333221 11112222211111 116889999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHc
Q 017532 190 YNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVG 269 (370)
Q Consensus 190 ~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~ 269 (370)
+++|...++.+++..| ++..++..++.++.+.+++++|...++++++..++ . ...++.+|.++...
T Consensus 102 ~~ea~~~l~~~~~~~P-d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~------------~-~~~~~~~a~~l~~~ 167 (694)
T PRK15179 102 SDEGLAVWRGIHQRFP-DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS------------S-AREILLEAKSWDEI 167 (694)
T ss_pred cHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC------------C-HHHHHHHHHHHHHh
Confidence 9999999999999999 99999999999999999999999999999965443 3 66788999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 270 KDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 270 g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
|++++|+..|+++++.+|+++.++.++|.++...|+.++|...|++++....+
T Consensus 168 g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 168 GQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred cchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 99999999999999999999999999999999999999999999999998654
No 54
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.52 E-value=4.3e-12 Score=129.57 Aligned_cols=282 Identities=12% Similarity=0.049 Sum_probs=183.1
Q ss_pred CCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCC
Q 017532 29 VPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPH 108 (370)
Q Consensus 29 ~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~ 108 (370)
......+..+.+.|+++.|..+...+...|. .|+ ...++..+.++++.|+++.|...|+.+...+.
T Consensus 124 ~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~--~~~--~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~---------- 189 (697)
T PLN03081 124 STYDALVEACIALKSIRCVKAVYWHVESSGF--EPD--QYMMNRVLLMHVKCGMLIDARRLFDEMPERNL---------- 189 (697)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC--Ccc--hHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCe----------
Confidence 3455578888889999999999998887774 354 23334447789999999999999998853211
Q ss_pred CCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHH--------HHHHH-------------------------
Q 017532 109 IYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFV--------REKLA------------------------- 155 (370)
Q Consensus 109 ~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~--------~~~~~------------------------- 155 (370)
+ .+..+...+ ...|++++|++.|.++.... ...+.
T Consensus 190 ---------~--t~n~li~~~-~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~ 257 (697)
T PLN03081 190 ---------A--SWGTIIGGL-VDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVG 257 (697)
T ss_pred ---------e--eHHHHHHHH-HHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCc
Confidence 1 223333222 55688888888887764320 00000
Q ss_pred ----------HH-hhHhhHHhHHHHHHHH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 017532 156 ----------RK-LAEKLEESVKSWKKRE---IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQ 221 (370)
Q Consensus 156 ----------~~-~~~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~ 221 (370)
.. +.+..+++.+++.... ..+++.++..|.+.|++++|+.+|+++.+.+...+..++..+...+.+
T Consensus 258 d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~ 337 (697)
T PLN03081 258 DTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSR 337 (697)
T ss_pred cceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 00 1122334444444322 456777778888888888888888888766544566777777778888
Q ss_pred cCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 017532 222 VGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLM 301 (370)
Q Consensus 222 ~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~ 301 (370)
.|++++|.+.++.+.+.. ..|+ ..++..+...|.+.|++++|.+.|+++.+ .|..+|+.+..+|.
T Consensus 338 ~g~~~~a~~i~~~m~~~g----------~~~d--~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~ 402 (697)
T PLN03081 338 LALLEHAKQAHAGLIRTG----------FPLD--IVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYG 402 (697)
T ss_pred ccchHHHHHHHHHHHHhC----------CCCC--eeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHH
Confidence 888888888887777531 1121 23345567777788888888888887753 35678888888888
Q ss_pred HhCCHHHHHHHHHHHHHhCCCcchhHHHHHH-HHHHHHhccCCchhhHHHHHHHHh
Q 017532 302 YLRDLSDSIKVLENALERVPTVALNETLVVN-LCSMYELAYVNHSDIKRTLSSWIG 356 (370)
Q Consensus 302 ~~g~~~~A~~~l~~al~~~p~~~~~~~~~~n-l~~lyel~~~~~~~~~~~ll~~~~ 356 (370)
+.|+.++|++.|+++.+....+ +...|+ +...+ .+.+..++...++....
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~P---d~~T~~~ll~a~--~~~g~~~~a~~~f~~m~ 453 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAP---NHVTFLAVLSAC--RYSGLSEQGWEIFQSMS 453 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHH--hcCCcHHHHHHHHHHHH
Confidence 8899999999998888765443 222222 22222 34455666666666554
No 55
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.52 E-value=1.4e-11 Score=112.30 Aligned_cols=270 Identities=14% Similarity=0.075 Sum_probs=194.3
Q ss_pred hHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCC
Q 017532 32 LASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYP 111 (370)
Q Consensus 32 ~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~ 111 (370)
....-.+.++|+++.||+.++-.-.+. ....+......+.+.-+.+-+++.+|....+...+.+.... +-..
T Consensus 423 i~ka~~~lk~~d~~~aieilkv~~~kd--nk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~------~a~~ 494 (840)
T KOG2003|consen 423 INKAGELLKNGDIEGAIEILKVFEKKD--NKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNA------AALT 494 (840)
T ss_pred hhHHHHHHhccCHHHHHHHHHHHHhcc--chhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCH------HHhh
Confidence 345668999999999998876643222 00111111111212334445788888888888877664221 1111
Q ss_pred CCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHH---HHHHHHH-----HhhHhhHHhHHHHHHHH------HHHH
Q 017532 112 NRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDF---VREKLAR-----KLAEKLEESVKSWKKRE------IFVL 177 (370)
Q Consensus 112 ~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~---~~~~~~~-----~~~~~~~~~~~~~~~~~------~~~~ 177 (370)
+++ .+.+..|+.+.|.+.+.+.+.. |.+.+.. ...+.++++...+.+.. ++++
T Consensus 495 nkg-------------n~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl 561 (840)
T KOG2003|consen 495 NKG-------------NIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVL 561 (840)
T ss_pred cCC-------------ceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHH
Confidence 111 1225678999999998888743 5544421 12334455555554432 7889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHH
Q 017532 178 NCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNL 257 (370)
Q Consensus 178 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~ 257 (370)
..++++|-.+.+..+|++++.++...-| .++.+++.||.+|-+.||-..|.+++-..-+..|-+ .+
T Consensus 562 ~qianiye~led~aqaie~~~q~~slip-~dp~ilskl~dlydqegdksqafq~~ydsyryfp~n-------------ie 627 (840)
T KOG2003|consen 562 VQIANIYELLEDPAQAIELLMQANSLIP-NDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCN-------------IE 627 (840)
T ss_pred HHHHHHHHHhhCHHHHHHHHHHhcccCC-CCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcc-------------hH
Confidence 9999999999999999999999999999 999999999999999999999999887776544332 22
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 017532 258 VSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSM 336 (370)
Q Consensus 258 ~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~l 336 (370)
..-.+|-.|+...-+++|+.+|+++.-+.|+...-....|.|+.++|+|++|...|...-+..|.+...-.++..++.=
T Consensus 628 ~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~d 706 (840)
T KOG2003|consen 628 TIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGD 706 (840)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcc
Confidence 3334888899999999999999999999999988888999999999999999999999999999874444455555543
No 56
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.52 E-value=1.3e-11 Score=117.39 Aligned_cols=271 Identities=8% Similarity=0.018 Sum_probs=171.8
Q ss_pred HHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCc
Q 017532 37 DLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGS 116 (370)
Q Consensus 37 ~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 116 (370)
..+..|+|..|.+...+..... .+| ..++...+.+-.+.|+++.|...+.++...++..
T Consensus 93 ~a~~eGd~~~A~k~l~~~~~~~--~~p---~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~---------------- 151 (398)
T PRK10747 93 LKLAEGDYQQVEKLMTRNADHA--EQP---VVNYLLAAEAAQQRGDEARANQHLERAAELADND---------------- 151 (398)
T ss_pred HHHhCCCHHHHHHHHHHHHhcc--cch---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcc----------------
Confidence 3445799999998877743221 122 2333333444578899999999998886543211
Q ss_pred ccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHH--------hhHhhHHhHHHHHHHH--------------H
Q 017532 117 MVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARK--------LAEKLEESVKSWKKRE--------------I 174 (370)
Q Consensus 117 ~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~--------~~~~~~~~~~~~~~~~--------------~ 174 (370)
.+..+++.+++....|++++|+..+..+.+..+...... ..++.+++.+...... .
T Consensus 152 --~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~ 229 (398)
T PRK10747 152 --QLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQ 229 (398)
T ss_pred --hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 012233446677788999999988877764433221000 0111111111111100 0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
.++..+........+-+......+..-+..+ +++.+...++..+...|+.++|.+.++++++. .-++..
T Consensus 230 ~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~-~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~----------~~~~~l 298 (398)
T PRK10747 230 QAWIGLMDQAMADQGSEGLKRWWKNQSRKTR-HQVALQVAMAEHLIECDDHDTAQQIILDGLKR----------QYDERL 298 (398)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHh-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----------CCCHHH
Confidence 1111111122222333333444444434445 67888889999999999999999999999852 223332
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHH
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLC 334 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~ 334 (370)
....+.+ ..++.+++++..++.++.+|+++..+..+|.++...|++++|.++|+++++..|++ .....++
T Consensus 299 ----~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~----~~~~~La 368 (398)
T PRK10747 299 ----VLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA----YDYAWLA 368 (398)
T ss_pred ----HHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH----HHHHHHH
Confidence 2223433 56999999999999999999999999999999999999999999999999999984 4556899
Q ss_pred HHHHhccCCchhhHHHHHH
Q 017532 335 SMYELAYVNHSDIKRTLSS 353 (370)
Q Consensus 335 ~lyel~~~~~~~~~~~ll~ 353 (370)
.+++-..+ .++...+-+
T Consensus 369 ~~~~~~g~--~~~A~~~~~ 385 (398)
T PRK10747 369 DALDRLHK--PEEAAAMRR 385 (398)
T ss_pred HHHHHcCC--HHHHHHHHH
Confidence 99985433 455544443
No 57
>PLN02789 farnesyltranstransferase
Probab=99.51 E-value=8.7e-12 Score=114.10 Aligned_cols=131 Identities=9% Similarity=-0.015 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHc-
Q 017532 191 NVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVG- 269 (370)
Q Consensus 191 ~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~- 269 (370)
++++.+++++++.+| .+..+|+..|.++...|++++|+++++++++..+.+ ..+|..+|.+....
T Consensus 125 ~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N-------------~sAW~~R~~vl~~~~ 190 (320)
T PLN02789 125 NKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN-------------NSAWNQRYFVITRSP 190 (320)
T ss_pred HHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc-------------hhHHHHHHHHHHhcc
Confidence 678889999999999 999999999999999999999999999999754432 56788899988776
Q ss_pred --CCH----HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Q 017532 270 --KDY----VSAVREYEECIERDYNDIVAINNKALCLMY----LRDLSDSIKVLENALERVPTVALNETLVVNLCSMYE 338 (370)
Q Consensus 270 --g~~----~eA~~~~~~~l~~~p~~~~~~~nla~~~~~----~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lye 338 (370)
|.+ ++++++..++|..+|+|..+|+.++.++.. +++..+|++.+.+++..+|.. ..++--|+.+|.
T Consensus 191 ~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s---~~al~~l~d~~~ 266 (320)
T PLN02789 191 LLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNH---VFALSDLLDLLC 266 (320)
T ss_pred ccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCc---HHHHHHHHHHHH
Confidence 333 478888899999999999999999999988 456788999999999988876 666777777776
No 58
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=4.1e-12 Score=119.23 Aligned_cols=214 Identities=15% Similarity=0.155 Sum_probs=156.1
Q ss_pred cCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccC
Q 017532 28 LVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYP 107 (370)
Q Consensus 28 ~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~ 107 (370)
++..+..+....+.|+|++|+..+.++++.+ |.+ .+.+.++++|++++++|++|+...+.-+.+.....|
T Consensus 12 ~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~----pdd-~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~----- 81 (652)
T KOG2376|consen 12 LEALLTDLNRHGKNGEYEEAVKTANKILSIV----PDD-EDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSF----- 81 (652)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHhcC----CCc-HhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchh-----
Confidence 3566788999999999999999999976543 664 566777899999999999999766655433221111
Q ss_pred CCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhc
Q 017532 108 HIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSS 187 (370)
Q Consensus 108 ~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 187 (370)
| .=.|++.++++..++|+..+..+-...+ .++...|.++++.
T Consensus 82 ------------~---fEKAYc~Yrlnk~Dealk~~~~~~~~~~-----------------------~ll~L~AQvlYrl 123 (652)
T KOG2376|consen 82 ------------F---FEKAYCEYRLNKLDEALKTLKGLDRLDD-----------------------KLLELRAQVLYRL 123 (652)
T ss_pred ------------h---HHHHHHHHHcccHHHHHHHHhcccccch-----------------------HHHHHHHHHHHHH
Confidence 0 1257788899999999887763211110 1233566677888
Q ss_pred CCHHHHHHHHHHHHhCCC------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017532 188 KEYNVCFDLMNESIGRGN------------------------------GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEE 237 (370)
Q Consensus 188 g~~~~A~~~~~~~l~~~~------------------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~ 237 (370)
|+|++|+.+|+.+++.+. .++...+++.+.++...|+|.+|++.++++++
T Consensus 124 ~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~ 203 (652)
T KOG2376|consen 124 ERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALR 203 (652)
T ss_pred hhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 888888888888855443 12346678999999999999999999999988
Q ss_pred HhhcCCc--cCC-ccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 017532 238 MLNEGKF--EDG-LLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI 290 (370)
Q Consensus 238 l~~~~~~--~~~-~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~ 290 (370)
++...-. +.. +....++ ..+...++.++..+|+.+||.+.|...+..+|.|.
T Consensus 204 ~~~e~l~~~d~~eEeie~el-~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~ 258 (652)
T KOG2376|consen 204 ICREKLEDEDTNEEEIEEEL-NPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADE 258 (652)
T ss_pred HHHHhhcccccchhhHHHHH-HHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCc
Confidence 8765422 111 1222333 56778899999999999999999999999987554
No 59
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.50 E-value=2.3e-12 Score=117.36 Aligned_cols=288 Identities=14% Similarity=0.133 Sum_probs=143.2
Q ss_pred HHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCC-CCCcccccCCCCCCC
Q 017532 35 LQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNS-SGYQYETYPHIYPNR 113 (370)
Q Consensus 35 l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~-~~~~~~~~~~~~~~~ 113 (370)
...+++.|.|+.||+.++.. +.-+|+ ..+.+++ +.|....|.-+.-.+.|.++.++.. ++. +.| ...
T Consensus 283 gvtfiq~gqy~dainsfdh~----m~~~pn-~~a~~nl-~i~~f~i~d~ekmkeaf~kli~ip~~~dd--dky----i~~ 350 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHC----MEEAPN-FIAALNL-IICAFAIGDAEKMKEAFQKLIDIPGEIDD--DKY----IKE 350 (840)
T ss_pred CeeEEecccchhhHhhHHHH----HHhCcc-HHhhhhh-hhhheecCcHHHHHHHHHHHhcCCCCCCc--ccc----cCC
Confidence 34578899999999988885 334576 3445554 6777778888888888999887653 111 000 000
Q ss_pred CCcccchhHHHHHHHc----Ccc--cCCccchHHHHHHHHHHHHHHHHHH-hhHhhHHhHHHHHHH-----HHHHHHHHH
Q 017532 114 TGSMVPFSLRWLYAVL----PIK--LSNRQVGLDRFYELLDFVREKLARK-LAEKLEESVKSWKKR-----EIFVLNCLI 181 (370)
Q Consensus 114 ~~~~~~~~~r~l~a~~----~~~--~g~~~~al~~l~~ll~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~la 181 (370)
.. .|.. .++...+ ... ..+-..|.+.+-...+...+.+... ..+ .+=.++..+.. ....-.+.+
T Consensus 351 ~d--dp~~-~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g-~dwcle~lk~s~~~~la~dlei~ka 426 (840)
T KOG2003|consen 351 KD--DPDD-NLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAG-CDWCLESLKASQHAELAIDLEINKA 426 (840)
T ss_pred cC--Ccch-HHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcc-cHHHHHHHHHhhhhhhhhhhhhhHH
Confidence 00 1111 1111111 000 0011111111111111111110000 000 00000000000 012223455
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHH
Q 017532 182 GYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQV--GDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVS 259 (370)
Q Consensus 182 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~--g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~ 259 (370)
..+++.|+++.|++++.-.-+.+......+-.+|..+++.+ .++..|.++-+.++.+.+-+ ..+.
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn-------------~~a~ 493 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYN-------------AAAL 493 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccC-------------HHHh
Confidence 56666777777777666554444422333344444444442 24566666666666432221 3445
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHh
Q 017532 260 RNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYEL 339 (370)
Q Consensus 260 ~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel 339 (370)
.+.|.+.+..|++++|.+.|++++..+.....+++|.|..+..+|++++|+.+|-+.-.+--++ ..+++.++.+||+
T Consensus 494 ~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn---~evl~qianiye~ 570 (840)
T KOG2003|consen 494 TNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNN---AEVLVQIANIYEL 570 (840)
T ss_pred hcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHH
Confidence 5666666666666666666666666666666666666666666666666666666654443333 5666666666666
Q ss_pred ccCCchhhHHHHHHHHh
Q 017532 340 AYVNHSDIKRTLSSWIG 356 (370)
Q Consensus 340 ~~~~~~~~~~~ll~~~~ 356 (370)
..+ ..++.+++-++.
T Consensus 571 led--~aqaie~~~q~~ 585 (840)
T KOG2003|consen 571 LED--PAQAIELLMQAN 585 (840)
T ss_pred hhC--HHHHHHHHHHhc
Confidence 544 344455544443
No 60
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=2.8e-12 Score=119.88 Aligned_cols=281 Identities=14% Similarity=0.079 Sum_probs=207.4
Q ss_pred CCcCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccc
Q 017532 26 NDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYET 105 (370)
Q Consensus 26 ~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~ 105 (370)
.+++.-......+...++|++-.++++.... .+|- +..++..++.+|..+|+...-.-.-.++.++.
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle----~dpf-h~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-------- 308 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLE----KDPF-HLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-------- 308 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHh----hCCC-CcchHHHHHHHHHHhcccchHHHHHHHHHHhC--------
Confidence 3444455577888999999999999988644 3454 36677778899999999888877777775543
Q ss_pred cCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHH
Q 017532 106 YPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHL 185 (370)
Q Consensus 106 ~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 185 (370)
|. +.++|. .+..+ +...|+..+|-..+.......+ ....++...|..+.
T Consensus 309 -----P~---~a~sW~--aVg~Y-Yl~i~k~seARry~SKat~lD~--------------------~fgpaWl~fghsfa 357 (611)
T KOG1173|consen 309 -----PS---KALSWF--AVGCY-YLMIGKYSEARRYFSKATTLDP--------------------TFGPAWLAFGHSFA 357 (611)
T ss_pred -----CC---CCcchh--hHHHH-HHHhcCcHHHHHHHHHHhhcCc--------------------cccHHHHHHhHHhh
Confidence 22 234442 11111 1344777777665554321111 01244567888999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHH
Q 017532 186 SSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALI 265 (370)
Q Consensus 186 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~ 265 (370)
..|+.++|+..|..+-+.-+ ....-...+|.-|.+.+.+.-|.++|.+|..++|. +| .+...+|.+
T Consensus 358 ~e~EhdQAmaaY~tAarl~~-G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~---------Dp----lv~~Elgvv 423 (611)
T KOG1173|consen 358 GEGEHDQAMAAYFTAARLMP-GCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPS---------DP----LVLHELGVV 423 (611)
T ss_pred hcchHHHHHHHHHHHHHhcc-CCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCC---------cc----hhhhhhhhe
Confidence 99999999999999999988 54445556699999999999999999999987765 33 456789999
Q ss_pred HHHcCCHHHHHHHHHHHHhh----CCC---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Q 017532 266 YLVGKDYVSAVREYEECIER----DYN---DIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYE 338 (370)
Q Consensus 266 ~~~~g~~~eA~~~~~~~l~~----~p~---~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lye 338 (370)
.+..+.|.+|..+|+.++.. .+. -...++|+|-++.+.+++++|+..+++++.+.|.+ ....-.++.+|.
T Consensus 424 ay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~---~~~~asig~iy~ 500 (611)
T KOG1173|consen 424 AYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD---ASTHASIGYIYH 500 (611)
T ss_pred eehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc---hhHHHHHHHHHH
Confidence 99999999999999999843 222 23568999999999999999999999999999998 778888899998
Q ss_pred hccCCchhhHHHHHHHHhhhCCCC-CCCcccc
Q 017532 339 LAYVNHSDIKRTLSSWIGRVAPDD-FDSSCTR 369 (370)
Q Consensus 339 l~~~~~~~~~~~ll~~~~~~~~d~-~~~~~~~ 369 (370)
+..+ -+.+.+.+.+---..|++ +-.+|||
T Consensus 501 llgn--ld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 501 LLGN--LDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred HhcC--hHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 7655 555666555554455555 6666665
No 61
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.48 E-value=2.2e-12 Score=103.41 Aligned_cols=108 Identities=13% Similarity=0.074 Sum_probs=97.7
Q ss_pred HHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHH
Q 017532 199 ESIGRG-NGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVR 277 (370)
Q Consensus 199 ~~l~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~ 277 (370)
.+.... + +.-+.++.+|..+.+.|++++|++.|+....+ +|.+ ..-|+++|.|+..+|+|++|+.
T Consensus 25 ~l~~~~~~-~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~------------Dp~~-~~y~~gLG~~~Q~~g~~~~AI~ 90 (157)
T PRK15363 25 MLLDDDVT-QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY------------DAWS-FDYWFRLGECCQAQKHWGEAIY 90 (157)
T ss_pred HHHCCChH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------------Cccc-HHHHHHHHHHHHHHhhHHHHHH
Confidence 344455 5 66778899999999999999999999999854 5555 7789999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 017532 278 EYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERV 320 (370)
Q Consensus 278 ~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~ 320 (370)
.|.+++.++|+++.++.|.|+|++..|+.+.|++.|+.++...
T Consensus 91 aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 91 AYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999886
No 62
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.46 E-value=5.7e-12 Score=111.27 Aligned_cols=173 Identities=13% Similarity=0.028 Sum_probs=134.6
Q ss_pred HHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 017532 126 YAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGN 205 (370)
Q Consensus 126 ~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 205 (370)
.+......|++.+|+..+.+++...+... | ...+++.+|.++...|++++|+..|+++++..|
T Consensus 39 ~g~~~~~~~~~~~A~~~~~~~~~~~p~~~--------------~---~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p 101 (235)
T TIGR03302 39 EAKEALDSGDYTEAIKYFEALESRYPFSP--------------Y---AEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP 101 (235)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCch--------------h---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc
Confidence 34444677899999888877654332110 0 124567899999999999999999999999999
Q ss_pred CCCHH---HHHHHHHHHHHc--------CCHHHHHHHHHHHHHHhhcCCccCCccch---------HHHHHHHHHhHHHH
Q 017532 206 GLDPI---LVSKLGFIQMQV--------GDLEGAKKSFNRVEEMLNEGKFEDGLLSE---------VEFRNLVSRNKALI 265 (370)
Q Consensus 206 ~~~~~---~~~~lg~~~~~~--------g~~~~A~~~~~~a~~l~~~~~~~~~~~~~---------p~~~~~~~~~~g~~ 265 (370)
+++. +++.+|.++.+. |++++|++.|+++++..+++.. ... ... ......+|.+
T Consensus 102 -~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~----~~~a~~~~~~~~~~~-~~~~~~~a~~ 175 (235)
T TIGR03302 102 -NHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEY----APDAKKRMDYLRNRL-AGKELYVARF 175 (235)
T ss_pred -CCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChh----HHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 6654 688999999886 8999999999999987665311 000 000 1123468999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 017532 266 YLVGKDYVSAVREYEECIERDYND---IVAINNKALCLMYLRDLSDSIKVLENALERVP 321 (370)
Q Consensus 266 ~~~~g~~~eA~~~~~~~l~~~p~~---~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p 321 (370)
++..|++.+|+..|++++...|++ +.+++++|.++..+|++++|+++++.+....|
T Consensus 176 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 176 YLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 999999999999999999997654 58999999999999999999999988877666
No 63
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.45 E-value=1.3e-10 Score=111.12 Aligned_cols=280 Identities=8% Similarity=-0.028 Sum_probs=175.0
Q ss_pred hHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCC
Q 017532 34 SLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNR 113 (370)
Q Consensus 34 ~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~ 113 (370)
........|+|..|.+.+.++... .|.. ...+...+.+..+.|+++.|...+..+....+ +.
T Consensus 90 ~glla~~~g~~~~A~~~l~~~~~~----~~~~-~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p-------------~~ 151 (409)
T TIGR00540 90 EALLKLAEGDYAKAEKLIAKNADH----AAEP-VLNLIKAAEAAQQRGDEARANQHLEEAAELAG-------------ND 151 (409)
T ss_pred HHHHHHhCCCHHHHHHHHHHHhhc----CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-------------cC
Confidence 344566788999998888776433 2432 33444456677788999999988888743221 10
Q ss_pred CCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHH--------hhHhhHHhHHHHHHHH----------HH
Q 017532 114 TGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARK--------LAEKLEESVKSWKKRE----------IF 175 (370)
Q Consensus 114 ~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~--------~~~~~~~~~~~~~~~~----------~~ 175 (370)
....++..+++....|+.++|+..+..+.+..+...... ..++.+++.+...... ..
T Consensus 152 -----~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~ 226 (409)
T TIGR00540 152 -----NILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFAD 226 (409)
T ss_pred -----chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 012344456666778888888888877765533221100 1111111111111111 00
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchH
Q 017532 176 VLNCLIGYHLSSKEYNVCFDLMNESIGRGNG---LDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEV 252 (370)
Q Consensus 176 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~---~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p 252 (370)
........++..+..+++...+.++....|. +++.++..+|..+...|++++|.+.++++++..+++ +
T Consensus 227 l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~---------~ 297 (409)
T TIGR00540 227 LEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDD---------R 297 (409)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc---------c
Confidence 1111111223334445555677777666662 477888889999999999999999999999755442 1
Q ss_pred HHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHhCCHHHHHHHHH--HHHHhCCCcchhHH
Q 017532 253 EFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI--VAINNKALCLMYLRDLSDSIKVLE--NALERVPTVALNET 328 (370)
Q Consensus 253 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~--~~~~nla~~~~~~g~~~~A~~~l~--~al~~~p~~~~~~~ 328 (370)
.. . .........+..++.+++++.+++.++.+|+++ ..+..+|.++.+.|++++|.++|+ .+++..|++ +.
T Consensus 298 ~~-~-~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~---~~ 372 (409)
T TIGR00540 298 AI-S-LPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA---ND 372 (409)
T ss_pred cc-h-hHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH---HH
Confidence 00 0 012244444566888899999999999999999 888899999999999999999999 577788875 33
Q ss_pred HHHHHHHHHHhccCCchhhHHHHHH
Q 017532 329 LVVNLCSMYELAYVNHSDIKRTLSS 353 (370)
Q Consensus 329 ~~~nl~~lyel~~~~~~~~~~~ll~ 353 (370)
...++.+++...+ .+++..+-+
T Consensus 373 -~~~La~ll~~~g~--~~~A~~~~~ 394 (409)
T TIGR00540 373 -LAMAADAFDQAGD--KAEAAAMRQ 394 (409)
T ss_pred -HHHHHHHHHHcCC--HHHHHHHHH
Confidence 5588888875433 444444433
No 64
>PLN03077 Protein ECB2; Provisional
Probab=99.45 E-value=4.6e-11 Score=124.84 Aligned_cols=250 Identities=12% Similarity=0.040 Sum_probs=126.0
Q ss_pred CCcCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHH---------------------------------HHHHHH
Q 017532 26 NDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHH---------------------------------LTYLAY 72 (370)
Q Consensus 26 ~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~---------------------------------~~~~~~ 72 (370)
.|+......+..+++.|++++|+++++++...+. .|+.. ...++.
T Consensus 352 ~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~--~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~ 429 (857)
T PLN03077 352 KDAVSWTAMISGYEKNGLPDKALETYALMEQDNV--SPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANA 429 (857)
T ss_pred CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCC--CCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4566666778888888888888888888766553 23310 111222
Q ss_pred HHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHH
Q 017532 73 NTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVRE 152 (370)
Q Consensus 73 ~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~ 152 (370)
.+..|++.|++++|.+.|+.+.+.+ .+.| ..+...+ ...|+..+|+..+.++......
T Consensus 430 Li~~y~k~g~~~~A~~vf~~m~~~d-------------------~vs~--~~mi~~~-~~~g~~~eA~~lf~~m~~~~~p 487 (857)
T PLN03077 430 LIEMYSKCKCIDKALEVFHNIPEKD-------------------VISW--TSIIAGL-RLNNRCFEALIFFRQMLLTLKP 487 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhCCCCC-------------------eeeH--HHHHHHH-HHCCCHHHHHHHHHHHHhCCCC
Confidence 2455677777777777777764321 1222 2222222 5678888888888777532111
Q ss_pred H-------HHHH-hhHhhHHhHHHHHHHH-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 017532 153 K-------LARK-LAEKLEESVKSWKKRE-------IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGF 217 (370)
Q Consensus 153 ~-------~~~~-~~~~~~~~~~~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~ 217 (370)
. +... ..+..+...++..... ..+.+.+...|.+.|+.++|...|+.+ + .+..+|+.+..
T Consensus 488 d~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~-~d~~s~n~lI~ 562 (857)
T PLN03077 488 NSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----E-KDVVSWNILLT 562 (857)
T ss_pred CHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----C-CChhhHHHHHH
Confidence 1 0000 0011111111111111 223344555555566666666555554 2 44555555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHH
Q 017532 218 IQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD--YNDIVAINN 295 (370)
Q Consensus 218 ~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~--p~~~~~~~n 295 (370)
.|.+.|+.++|++.|+++.+. ...|+..+ +..+-..+...|+.++|.++|+.+.+.. ..+...|+.
T Consensus 563 ~~~~~G~~~~A~~lf~~M~~~----------g~~Pd~~T--~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~ 630 (857)
T PLN03077 563 GYVAHGKGSMAVELFNRMVES----------GVNPDEVT--FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYAC 630 (857)
T ss_pred HHHHcCCHHHHHHHHHHHHHc----------CCCCCccc--HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHH
Confidence 666666666666666655531 11222111 1112223445555556655555555322 223445555
Q ss_pred HHHHHHHhCCHHHHHHHHHHH
Q 017532 296 KALCLMYLRDLSDSIKVLENA 316 (370)
Q Consensus 296 la~~~~~~g~~~~A~~~l~~a 316 (370)
+..++.+.|++++|.+.++++
T Consensus 631 lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 631 VVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHC
Confidence 555555555555555555543
No 65
>PLN02789 farnesyltranstransferase
Probab=99.44 E-value=1.7e-11 Score=112.14 Aligned_cols=147 Identities=9% Similarity=0.040 Sum_probs=127.2
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHhhcCCccCCccchH
Q 017532 176 VLNCLIGYHLSSK-EYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDL--EGAKKSFNRVEEMLNEGKFEDGLLSEV 252 (370)
Q Consensus 176 ~~~~la~~~~~~g-~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~--~~A~~~~~~a~~l~~~~~~~~~~~~~p 252 (370)
+++.++.++...| ++++++..+++++..+| .+..+|+..+.+..+.|+. ++++.++++++++.+
T Consensus 73 aW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dp------------ 139 (320)
T PLN02789 73 VWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDA------------ 139 (320)
T ss_pred HHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCc------------
Confidence 4455666777777 68999999999999999 9999999999999999874 788999999996544
Q ss_pred HHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh---CCH----HHHHHHHHHHHHhCCCcch
Q 017532 253 EFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYL---RDL----SDSIKVLENALERVPTVAL 325 (370)
Q Consensus 253 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~---g~~----~~A~~~l~~al~~~p~~~~ 325 (370)
.. ..+|.++|.++...|++++|++.+.++|+.+|.|..+|++++.++... |++ ++++++..++|..+|++
T Consensus 140 kN-y~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N-- 216 (320)
T PLN02789 140 KN-YHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRN-- 216 (320)
T ss_pred cc-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCC--
Confidence 33 778999999999999999999999999999999999999999988776 333 57899999999999998
Q ss_pred hHHHHHHHHHHHHh
Q 017532 326 NETLVVNLCSMYEL 339 (370)
Q Consensus 326 ~~~~~~nl~~lyel 339 (370)
.+++.++.-++..
T Consensus 217 -~SaW~Yl~~ll~~ 229 (320)
T PLN02789 217 -ESPWRYLRGLFKD 229 (320)
T ss_pred -cCHHHHHHHHHhc
Confidence 8888888888764
No 66
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.44 E-value=4.2e-10 Score=114.78 Aligned_cols=189 Identities=9% Similarity=-0.082 Sum_probs=149.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCcc---
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNG-----LDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFE--- 245 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~--- 245 (370)
..+....|..|+..++.++|+.+|++++...+. .+......|...++..|++++|..++++..+..|-.-.+
T Consensus 327 ~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~ 406 (822)
T PRK14574 327 DYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGL 406 (822)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCC
Confidence 346667888899999999999999999876530 223334677888999999999999999998643310000
Q ss_pred CCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcch
Q 017532 246 DGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVAL 325 (370)
Q Consensus 246 ~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~ 325 (370)
.....+|+. ......++.++...|++.+|.+.+++.+...|.|..+...+|.++...|.+.+|.+.++.+..++|++
T Consensus 407 ~~~~pn~d~-~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~-- 483 (822)
T PRK14574 407 PGKEPNDDW-IEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRS-- 483 (822)
T ss_pred CCCCCCccH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCcc--
Confidence 011346667 67788899999999999999999999999999999999999999999999999999999999999987
Q ss_pred hHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCCCCCCccc
Q 017532 326 NETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDDFDSSCT 368 (370)
Q Consensus 326 ~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d~~~~~~~ 368 (370)
..+.+.++..+.- -+.-.+...++..+....||+..++-|
T Consensus 484 -~~~~~~~~~~al~--l~e~~~A~~~~~~l~~~~Pe~~~~~~l 523 (822)
T PRK14574 484 -LILERAQAETAMA--LQEWHQMELLTDDVISRSPEDIPSQEL 523 (822)
T ss_pred -HHHHHHHHHHHHh--hhhHHHHHHHHHHHHhhCCCchhHHHH
Confidence 6777777766653 344677778888888888887766543
No 67
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.44 E-value=7.7e-11 Score=112.66 Aligned_cols=252 Identities=12% Similarity=0.141 Sum_probs=178.2
Q ss_pred hHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCC
Q 017532 32 LASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYP 111 (370)
Q Consensus 32 ~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~ 111 (370)
.-..+...+.|+++.|...+.++... .|.+.+......+..++..|+++.|...++.+....+
T Consensus 122 llaA~aa~~~g~~~~A~~~l~~a~~~----~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P------------- 184 (409)
T TIGR00540 122 IKAAEAAQQRGDEARANQHLEEAAEL----AGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAP------------- 184 (409)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh----CCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-------------
Confidence 34566677889999999999997543 3554333323346678889999999999999865432
Q ss_pred CCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHH---HHHHH------------HHHh-hHhhHHhHHHHHHH---
Q 017532 112 NRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDF---VREKL------------ARKL-AEKLEESVKSWKKR--- 172 (370)
Q Consensus 112 ~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~---~~~~~------------~~~~-~~~~~~~~~~~~~~--- 172 (370)
+ .+..++ +.+.+....|+++++.+.+..+.+. ..... .... ........+.|...
T Consensus 185 ~-----~~~~l~-ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~ 258 (409)
T TIGR00540 185 R-----HKEVLK-LAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRH 258 (409)
T ss_pred C-----CHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHH
Confidence 1 122223 3445557889999888888776633 01100 0000 00112333445432
Q ss_pred ---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCC
Q 017532 173 ---EIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILV--SKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDG 247 (370)
Q Consensus 173 ---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~--~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~ 247 (370)
...++..++..+...|++++|+..++++++..| ++.... .......+..++.+.+++.++++++..|+
T Consensus 259 ~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~p-d~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~------ 331 (409)
T TIGR00540 259 RRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLG-DDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD------ 331 (409)
T ss_pred HhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC-CcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC------
Confidence 257888999999999999999999999999999 666421 33344455678899999999999965443
Q ss_pred ccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHH--HHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 248 LLSEVEFRNLVSRNKALIYLVGKDYVSAVREYE--ECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 248 ~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~--~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
+|+ ......+|.+++..|++++|.++|+ ++++.+|++.. +..+|.++...|+.++|.+++++++..
T Consensus 332 ---~~~--~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 332 ---KPK--CCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred ---Chh--HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 441 1456679999999999999999999 57778887666 559999999999999999999998764
No 68
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.44 E-value=5.5e-11 Score=117.45 Aligned_cols=173 Identities=16% Similarity=0.151 Sum_probs=142.5
Q ss_pred HHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchH
Q 017532 176 VLNCLIGYHLS---SKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEV 252 (370)
Q Consensus 176 ~~~~la~~~~~---~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p 252 (370)
++..||.+-+. ...+..+...+.++...++ .+|.+++.|+.-++..|+++.+.+....++... ...+
T Consensus 235 alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~-~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t---------~~~~ 304 (1018)
T KOG2002|consen 235 ALVALGEVDLNFNDSDSYKKGVQLLQRAYKENN-ENPVALNHLANHFYFKKDYERVWHLAEHAIKNT---------ENKS 304 (1018)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHHHhhcC-CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh---------hhhH
Confidence 33444444333 3567889999999999999 999999999999999999999999999998532 1233
Q ss_pred HHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHH
Q 017532 253 EFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYND-IVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVV 331 (370)
Q Consensus 253 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~-~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~ 331 (370)
.. +...+.+|.++..+|+|++|..+|.+++..+|++ ...++-+|..+.+.|++..|+.+|+++++..|+. .....
T Consensus 305 ~~-aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~---~etm~ 380 (1018)
T KOG2002|consen 305 IK-AESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNN---YETMK 380 (1018)
T ss_pred HH-HHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcch---HHHHH
Confidence 33 7889999999999999999999999999999998 6788899999999999999999999999999998 78889
Q ss_pred HHHHHHHhccC--CchhhHHHHHHHHhhhCCCC
Q 017532 332 NLCSMYELAYV--NHSDIKRTLSSWIGRVAPDD 362 (370)
Q Consensus 332 nl~~lyel~~~--~~~~~~~~ll~~~~~~~~d~ 362 (370)
-|+.+|..... ...++...+++++-+..|++
T Consensus 381 iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d 413 (1018)
T KOG2002|consen 381 ILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVD 413 (1018)
T ss_pred HHHhHHHhhhhhhHHHHHHHHHHHHHHhccccc
Confidence 99999985521 12356666777666665554
No 69
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.43 E-value=4.2e-12 Score=110.69 Aligned_cols=128 Identities=16% Similarity=0.179 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
+-+-.-|+-+++.++|++|+..|.++|+++| .++..+.+.+.+|.++|.++.|++-++.+++ .||..
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~------------iDp~y 148 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALS------------IDPHY 148 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHh------------cChHH
Confidence 3344667788889999999999999999999 9999999999999999999999999999994 57777
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHH---HHHHHHHHH
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLS---DSIKVLENA 316 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~---~A~~~l~~a 316 (370)
..+|.-+|.+|..+|++++|++.|+++|+++|++.....||..+-.+.+... .++..++-+
T Consensus 149 -skay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~ 212 (304)
T KOG0553|consen 149 -SKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMA 212 (304)
T ss_pred -HHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhh
Confidence 8899999999999999999999999999999999999999999888888777 444444443
No 70
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.43 E-value=8.9e-12 Score=112.63 Aligned_cols=262 Identities=19% Similarity=0.222 Sum_probs=166.7
Q ss_pred HhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCC
Q 017532 33 ASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPN 112 (370)
Q Consensus 33 ~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~ 112 (370)
=.++..+=.|+|..+++-++ ... .+|........+...+++.+|+++..+.++..-. +|.
T Consensus 6 f~vrn~fy~G~Y~~~i~e~~-~~~----~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~---~~~------------ 65 (290)
T PF04733_consen 6 FTVRNQFYLGNYQQCINEAS-LKS----FSPENKLERDFYQYRSYIALGQYDSVLSEIKKSS---SPE------------ 65 (290)
T ss_dssp HHHHHHHCTT-HHHHCHHHH-CHT----STCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTS---SCC------------
T ss_pred HHHHHHHHhhhHHHHHHHhh-ccC----CCchhHHHHHHHHHHHHHHcCChhHHHHHhccCC---Chh------------
Confidence 35778888999999997665 211 2344334455566789999999998887774432 111
Q ss_pred CCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHH
Q 017532 113 RTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNV 192 (370)
Q Consensus 113 ~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 192 (370)
.. ..+++...+ ...++.+..+..+.+.+.... . ..- ..+....|.++...|++++
T Consensus 66 ----l~--av~~la~y~-~~~~~~e~~l~~l~~~~~~~~--------~---~~~-------~~~~~~~A~i~~~~~~~~~ 120 (290)
T PF04733_consen 66 ----LQ--AVRLLAEYL-SSPSDKESALEELKELLADQA--------G---ESN-------EIVQLLAATILFHEGDYEE 120 (290)
T ss_dssp ----CH--HHHHHHHHH-CTSTTHHCHHHHHHHCCCTS--------------CH-------HHHHHHHHHHHCCCCHHHH
T ss_pred ----HH--HHHHHHHHH-hCccchHHHHHHHHHHHHhcc--------c---ccc-------HHHHHHHHHHHHHcCCHHH
Confidence 11 224333322 222222333333322210000 0 000 0122345567778899999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcC--
Q 017532 193 CFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGK-- 270 (370)
Q Consensus 193 A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g-- 270 (370)
|+..+++. .+.........+++.+|+++.|.+.++.+.+... |. .......+.+.+..|
T Consensus 121 AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~e----------D~---~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 121 ALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDE----------DS---ILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSC----------CH---HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----------cH---HHHHHHHHHHHHHhCch
Confidence 99888753 5567778888999999999999999988874321 21 222233444555555
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHH
Q 017532 271 DYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRT 350 (370)
Q Consensus 271 ~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ 350 (370)
++.+|.-.|+++.+..+.++..++.+|+|++.+|++++|.+.+++++..+|++ ..++.|+.++..+... ..+...+
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~---~d~LaNliv~~~~~gk-~~~~~~~ 257 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPND---PDTLANLIVCSLHLGK-PTEAAER 257 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH---HHHHHHHHHHHHHTT--TCHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC---HHHHHHHHHHHHHhCC-ChhHHHH
Confidence 68999999999888878889999999999999999999999999999999987 7889999888775433 3366677
Q ss_pred HHHHHhhhCCCC
Q 017532 351 LSSWIGRVAPDD 362 (370)
Q Consensus 351 ll~~~~~~~~d~ 362 (370)
++.++....|++
T Consensus 258 ~l~qL~~~~p~h 269 (290)
T PF04733_consen 258 YLSQLKQSNPNH 269 (290)
T ss_dssp HHHHCHHHTTTS
T ss_pred HHHHHHHhCCCC
Confidence 777888777765
No 71
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.42 E-value=7.5e-12 Score=117.43 Aligned_cols=196 Identities=12% Similarity=0.058 Sum_probs=151.6
Q ss_pred cccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 017532 131 IKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPI 210 (370)
Q Consensus 131 ~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 210 (370)
+..|+..+|.-.|+..+...++ .++.| ..||.+....++-..||..++++++++| ++-.
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~------------haeAW--------~~LG~~qaENE~E~~ai~AL~rcl~LdP-~Nle 354 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQ------------HAEAW--------QKLGITQAENENEQNAISALRRCLELDP-TNLE 354 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChH------------HHHHH--------HHhhhHhhhccchHHHHHHHHHHHhcCC-ccHH
Confidence 5556666666666555433332 34455 4689999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCc--------c--------------------------CCccchHHHHH
Q 017532 211 LVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKF--------E--------------------------DGLLSEVEFRN 256 (370)
Q Consensus 211 ~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~--------~--------------------------~~~~~~p~~~~ 256 (370)
++..||-.|...|.-.+|.+++.+=++..+.-.. . .+...+|+
T Consensus 355 aLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~Dpd--- 431 (579)
T KOG1125|consen 355 ALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPD--- 431 (579)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChh---
Confidence 9999999999999999999999885433211000 0 01124444
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 017532 257 LVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSM 336 (370)
Q Consensus 257 ~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~l 336 (370)
+...+|.+|...|+|+.|+.+|+.+|..+|+|...||.||.++....+..+||+.|.+|+++.|.+ ..+.|||+.-
T Consensus 432 -vQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y---VR~RyNlgIS 507 (579)
T KOG1125|consen 432 -VQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY---VRVRYNLGIS 507 (579)
T ss_pred -HHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe---eeeehhhhhh
Confidence 467799999999999999999999999999999999999999999999999999999999999998 7788888876
Q ss_pred HHhccCCchhhHHHHHHHH
Q 017532 337 YELAYVNHSDIKRTLSSWI 355 (370)
Q Consensus 337 yel~~~~~~~~~~~ll~~~ 355 (370)
|--.+. -+++...++..+
T Consensus 508 ~mNlG~-ykEA~~hlL~AL 525 (579)
T KOG1125|consen 508 CMNLGA-YKEAVKHLLEAL 525 (579)
T ss_pred hhhhhh-HHHHHHHHHHHH
Confidence 642222 124445555544
No 72
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.42 E-value=2e-10 Score=112.87 Aligned_cols=288 Identities=17% Similarity=0.151 Sum_probs=188.4
Q ss_pred cCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHh-----------------------------
Q 017532 28 LVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALM----------------------------- 78 (370)
Q Consensus 28 ~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~----------------------------- 78 (370)
|.+.......++..|++++|..++..++.+. |....+|.++ +..+-
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd----p~~~~ay~tL-~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~l 213 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQD----PRNPIAYYTL-GEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRL 213 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC----ccchhhHHHH-HHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 3344556667788899999999999987664 4333333332 33444
Q ss_pred -----hhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHH
Q 017532 79 -----KLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREK 153 (370)
Q Consensus 79 -----~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~ 153 (370)
++|++++|.-.+.++...+++++ .+..=.+.+....|+...|++.+..++..+++.
T Consensus 214 adls~~~~~i~qA~~cy~rAI~~~p~n~-------------------~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~ 274 (895)
T KOG2076|consen 214 ADLSEQLGNINQARYCYSRAIQANPSNW-------------------ELIYERSSLYQKTGDLKRAMETFLQLLQLDPPV 274 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCcch-------------------HHHHHHHHHHHHhChHHHHHHHHHHHHhhCCch
Confidence 44555555555555544433221 111112334456688888888888887665511
Q ss_pred ----H----HH---H--hhHhhHHhHHHHHHHH--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---------
Q 017532 154 ----L----AR---K--LAEKLEESVKSWKKRE--------IFVLNCLIGYHLSSKEYNVCFDLMNESIGR--------- 203 (370)
Q Consensus 154 ----~----~~---~--~~~~~~~~~~~~~~~~--------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------- 203 (370)
+ .. . .......+++...... -..++.++.+++....++.|+.........
T Consensus 275 d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~ 354 (895)
T KOG2076|consen 275 DIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEW 354 (895)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhh
Confidence 1 00 0 0111122222222222 245678888999999999999887777651
Q ss_pred -------------CC-----CCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHH
Q 017532 204 -------------GN-----GLDPIL-VSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKAL 264 (370)
Q Consensus 204 -------------~~-----~~~~~~-~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~ 264 (370)
.+ ..+..+ ...++.+.++.++..+++.+|..--. ..+......++.++.
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n------------~~~~d~~dL~~d~a~ 422 (895)
T KOG2076|consen 355 DTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDN------------VWVSDDVDLYLDLAD 422 (895)
T ss_pred hhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhc------------CChhhhHHHHHHHHH
Confidence 00 001122 55667777777777777777754431 123333677889999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCC
Q 017532 265 IYLVGKDYVSAVREYEECIERDYN-DIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVN 343 (370)
Q Consensus 265 ~~~~~g~~~eA~~~~~~~l~~~p~-~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~ 343 (370)
.+...|++.+|+.+|..++...+. +..+|.++|.||..+|.+++|++.|++++...|++ ..+.+.|+++|... +
T Consensus 423 al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~---~D~Ri~Lasl~~~~--g 497 (895)
T KOG2076|consen 423 ALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDN---LDARITLASLYQQL--G 497 (895)
T ss_pred HHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCc---hhhhhhHHHHHHhc--C
Confidence 999999999999999999877653 56799999999999999999999999999999998 88999999999853 4
Q ss_pred chhhHHHHHHHHh
Q 017532 344 HSDIKRTLSSWIG 356 (370)
Q Consensus 344 ~~~~~~~ll~~~~ 356 (370)
..+++.+.++.+-
T Consensus 498 ~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 498 NHEKALETLEQII 510 (895)
T ss_pred CHHHHHHHHhccc
Confidence 4677777665543
No 73
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.41 E-value=2.1e-10 Score=109.14 Aligned_cols=245 Identities=12% Similarity=0.112 Sum_probs=175.3
Q ss_pred HHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCC
Q 017532 35 LQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRT 114 (370)
Q Consensus 35 l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 114 (370)
.....+.|+++.|...+.++... +|..........+..+...|+++.|...++.+.+.++-
T Consensus 125 A~aA~~~g~~~~A~~~l~~A~~~----~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~--------------- 185 (398)
T PRK10747 125 AEAAQQRGDEARANQHLERAAEL----ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPR--------------- 185 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc----CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---------------
Confidence 34448999999999999997543 46543333333356688899999999999999665531
Q ss_pred CcccchhHHHHHHHcCcccCCccchHHHHHHHHHHH-------H----HH----HHHH-hhHhhHHhHHHHHHH------
Q 017532 115 GSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFV-------R----EK----LARK-LAEKLEESVKSWKKR------ 172 (370)
Q Consensus 115 ~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~-------~----~~----~~~~-~~~~~~~~~~~~~~~------ 172 (370)
.+..+++ .+.++...|++++++..+..+.+.. . .. +... .....+...+.|+..
T Consensus 186 ---~~~al~l-l~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~ 261 (398)
T PRK10747 186 ---HPEVLRL-AEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRH 261 (398)
T ss_pred ---CHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhC
Confidence 1222332 3445577799999997776664220 0 00 0000 111122344555542
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchH
Q 017532 173 EIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEV 252 (370)
Q Consensus 173 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p 252 (370)
...+...++..+...|+.++|...++++++. + .++.+....+.+ ..|+.+++++..++.++..|+ +
T Consensus 262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~-~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~---------~- 327 (398)
T PRK10747 262 QVALQVAMAEHLIECDDHDTAQQIILDGLKR-Q-YDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGD---------T- 327 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-C-CCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCC---------C-
Confidence 2567888999999999999999999999994 4 455444444443 459999999999999864333 3
Q ss_pred HHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 017532 253 EFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERV 320 (370)
Q Consensus 253 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~ 320 (370)
...+..+|.+++..|++++|.++|+++++.+|++.. +..++.++...|+.++|..+|++++.+.
T Consensus 328 ---~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 328 ---PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred ---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 445777999999999999999999999999998654 5579999999999999999999998764
No 74
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=4.7e-11 Score=111.28 Aligned_cols=55 Identities=13% Similarity=0.169 Sum_probs=44.5
Q ss_pred HhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhc
Q 017532 33 ASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSL 93 (370)
Q Consensus 33 ~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~ 93 (370)
..+....+..+|..|++.|..++.. + . .++++++...+++..|.+.++...+...
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el----~-~-~it~~~n~aA~~~e~~~~~~c~~~c~~a 283 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALEL----A-T-DITYLNNIAAVYLERGKYAECIELCEKA 283 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhH----h-h-hhHHHHHHHHHHHhccHHHHhhcchHHH
Confidence 3677788899999999999987543 3 2 4778888888999999999999888774
No 75
>PLN03077 Protein ECB2; Provisional
Probab=99.40 E-value=3.7e-10 Score=118.06 Aligned_cols=283 Identities=11% Similarity=0.018 Sum_probs=192.5
Q ss_pred cCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccC
Q 017532 28 LVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYP 107 (370)
Q Consensus 28 ~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~ 107 (370)
+......+..+++.|++++|.++++++.. |+ ..+ |+..+.++++.|++++|...|+++..--.|+
T Consensus 424 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~------~d-~vs-~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd------- 488 (857)
T PLN03077 424 VVVANALIEMYSKCKCIDKALEVFHNIPE------KD-VIS-WTSIIAGLRLNNRCFEALIFFRQMLLTLKPN------- 488 (857)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhCCC------CC-eee-HHHHHHHHHHCCCHHHHHHHHHHHHhCCCCC-------
Confidence 33344567788899999999999888632 32 233 4444888999999999999999995321111
Q ss_pred CCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHH--------HHHHHHH-hhHhhHHhHHHHHHH--HHHH
Q 017532 108 HIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFV--------REKLARK-LAEKLEESVKSWKKR--EIFV 176 (370)
Q Consensus 108 ~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~--------~~~~~~~-~~~~~~~~~~~~~~~--~~~~ 176 (370)
.+.+..+...+ ...|..+.+......+++.. ...+... +.+..+++.+.+... -..+
T Consensus 489 -----------~~t~~~lL~a~-~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s 556 (857)
T PLN03077 489 -----------SVTLIAALSAC-ARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVS 556 (857)
T ss_pred -----------HhHHHHHHHHH-hhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhh
Confidence 11223232222 45566666555544433220 0011100 111222222222221 2456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHH
Q 017532 177 LNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRN 256 (370)
Q Consensus 177 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~ 256 (370)
++.+...|...|+.++|+.+|+++.+.+...+..++..+-..+.+.|++++|.++|+++.+.. ...|+ .
T Consensus 557 ~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~---------gi~P~--~ 625 (857)
T PLN03077 557 WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKY---------SITPN--L 625 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHh---------CCCCc--h
Confidence 788999999999999999999999987655677788888888999999999999999998422 23444 3
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 017532 257 LVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSM 336 (370)
Q Consensus 257 ~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~l 336 (370)
..+..+...+.+.|++++|.+.++++ ...| +..+|..+-.++...|+.+.+....++++++.|++ ......|+.+
T Consensus 626 ~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-d~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~---~~~y~ll~n~ 700 (857)
T PLN03077 626 KHYACVVDLLGRAGKLTEAYNFINKM-PITP-DPAVWGALLNACRIHRHVELGELAAQHIFELDPNS---VGYYILLCNL 700 (857)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---cchHHHHHHH
Confidence 45667888999999999999999986 3444 47778888778888999999999999999999987 6677777888
Q ss_pred HHhccCCchhhHHHHHHHH
Q 017532 337 YELAYVNHSDIKRTLSSWI 355 (370)
Q Consensus 337 yel~~~~~~~~~~~ll~~~ 355 (370)
|... +.-+...++.+..
T Consensus 701 ya~~--g~~~~a~~vr~~M 717 (857)
T PLN03077 701 YADA--GKWDEVARVRKTM 717 (857)
T ss_pred HHHC--CChHHHHHHHHHH
Confidence 8643 3344444444443
No 76
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.39 E-value=8.5e-11 Score=100.77 Aligned_cols=148 Identities=16% Similarity=0.077 Sum_probs=126.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHH
Q 017532 178 NCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNL 257 (370)
Q Consensus 178 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~ 257 (370)
..++..+...|+-+.+..+..++...+| .+..++..+|...++.|++..|+..+.++.++.+++ ..
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~-~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d-------------~~ 135 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYP-KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTD-------------WE 135 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCc-ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCC-------------hh
Confidence 5677788888999999999999888888 888888778999999999999999999998654432 56
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Q 017532 258 VSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMY 337 (370)
Q Consensus 258 ~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~ly 337 (370)
.|+.+|.+|...|++++|...|.+++++.|+++.+.+|+|..+.-.|+++.|..++.++...-+.+ ..+.-||+.+.
T Consensus 136 ~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad---~~v~~NLAl~~ 212 (257)
T COG5010 136 AWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAAD---SRVRQNLALVV 212 (257)
T ss_pred hhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCc---hHHHHHHHHHH
Confidence 788899999999999999999999999999999999999999999999999999999998877766 77888888887
Q ss_pred HhccC
Q 017532 338 ELAYV 342 (370)
Q Consensus 338 el~~~ 342 (370)
.+..+
T Consensus 213 ~~~g~ 217 (257)
T COG5010 213 GLQGD 217 (257)
T ss_pred hhcCC
Confidence 76544
No 77
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=7.1e-12 Score=113.14 Aligned_cols=253 Identities=12% Similarity=0.115 Sum_probs=181.3
Q ss_pred CCCcCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhh---------hcCC
Q 017532 25 LNDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELD---------SLED 95 (370)
Q Consensus 25 ~~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~---------~~~~ 95 (370)
|++++-....+..+..-|+|+.|...+.... ...|...-.+... ..|...++...+|...++ ++..
T Consensus 80 pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~----r~kd~~~k~~~r~-~~c~~a~~~~i~A~~~~~~~~~~~~anal~~ 154 (486)
T KOG0550|consen 80 PDNASYYSNRAATLMMLGRFEEALGDARQSV----RLKDGFSKGQLRE-GQCHLALSDLIEAEEKLKSKQAYKAANALPT 154 (486)
T ss_pred ccchhhhchhHHHHHHHHhHhhcccchhhhe----ecCCCccccccch-hhhhhhhHHHHHHHHHhhhhhhhHHhhhhhh
Confidence 4555656668888889999999987665532 2334321111111 234444444444443333 1111
Q ss_pred CCCCCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHH
Q 017532 96 FNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIF 175 (370)
Q Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (370)
+++ +.+.....+..+..+++.+.+...+|+..+|...--.+++..... ..
T Consensus 155 ~~~----------~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n--------------------~~ 204 (486)
T KOG0550|consen 155 LEK----------LAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATN--------------------AE 204 (486)
T ss_pred hhc----------ccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccch--------------------hH
Confidence 111 011111123446778889999999999998876443333211111 24
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCC
Q 017532 176 VLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDP------------ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGK 243 (370)
Q Consensus 176 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~------------~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~ 243 (370)
.++..+.+++..++.+.|+..+++++..+| ++. ..+-.-|.-.++.|.+.+|.+.|..++.+.|++
T Consensus 205 al~vrg~~~yy~~~~~ka~~hf~qal~ldp-dh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n- 282 (486)
T KOG0550|consen 205 ALYVRGLCLYYNDNADKAINHFQQALRLDP-DHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN- 282 (486)
T ss_pred HHHhcccccccccchHHHHHHHhhhhccCh-hhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc-
Confidence 556788899999999999999999999999 553 234566888899999999999999999877663
Q ss_pred ccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 244 FEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 244 ~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
..++ +..+.++|.+....|+..+|+..++.++.+||....++..+|.|++.++++++|+++|+++++..-+
T Consensus 283 ------~~~n--aklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 283 ------KKTN--AKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred ------cchh--HHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 2332 6789999999999999999999999999999999999999999999999999999999999998765
No 78
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.37 E-value=9.5e-11 Score=117.32 Aligned_cols=151 Identities=7% Similarity=-0.106 Sum_probs=129.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHH
Q 017532 188 KEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYL 267 (370)
Q Consensus 188 g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~ 267 (370)
....+++.-+....+.++ .++.++.+||.+..+.|.+++|...+++++++.|++ ..+..+++.++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~-~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~-------------~~a~~~~a~~L~ 131 (694)
T PRK15179 66 HKPAAALPELLDYVRRYP-HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS-------------SEAFILMLRGVK 131 (694)
T ss_pred cchHhhHHHHHHHHHhcc-ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc-------------HHHHHHHHHHHH
Confidence 345556666666677788 889999999999999999999999999999765553 778899999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhh
Q 017532 268 VGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDI 347 (370)
Q Consensus 268 ~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~ 347 (370)
+.+++++|+..+++++..+|+++.+++++|.++...|++++|+..|++++..+|++ ..++.+++.++.- .+..+.
T Consensus 132 ~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~---~~~~~~~a~~l~~--~G~~~~ 206 (694)
T PRK15179 132 RQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEF---ENGYVGWAQSLTR--RGALWR 206 (694)
T ss_pred HhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHH--cCCHHH
Confidence 99999999999999999999999999999999999999999999999999999987 8899999988763 344555
Q ss_pred HHHHHHHHhh
Q 017532 348 KRTLSSWIGR 357 (370)
Q Consensus 348 ~~~ll~~~~~ 357 (370)
+....+....
T Consensus 207 A~~~~~~a~~ 216 (694)
T PRK15179 207 ARDVLQAGLD 216 (694)
T ss_pred HHHHHHHHHH
Confidence 5555554433
No 79
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.35 E-value=5.1e-10 Score=98.41 Aligned_cols=232 Identities=14% Similarity=0.078 Sum_probs=173.6
Q ss_pred HHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHH
Q 017532 74 TLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREK 153 (370)
Q Consensus 74 ~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~ 153 (370)
+.-++-.++.+.|...|-.+.+.++ -.|...+....++...|..+.|+..-..++..-. .
T Consensus 42 GlNfLLs~Q~dKAvdlF~e~l~~d~-------------------~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spd-l 101 (389)
T COG2956 42 GLNFLLSNQPDKAVDLFLEMLQEDP-------------------ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPD-L 101 (389)
T ss_pred HHHHHhhcCcchHHHHHHHHHhcCc-------------------hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC-C
Confidence 4444445677888887777755442 2233444445555666776666643333321100 0
Q ss_pred HHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 017532 154 LARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFN 233 (370)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 233 (370)
+ -.....+++.||.-|+..|=++.|..+|..++.... ....++..|-.+|-...++++|++.-+
T Consensus 102 -----T----------~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~ 165 (389)
T COG2956 102 -----T----------FEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAE 165 (389)
T ss_pred -----c----------hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 0 001135677899999999999999999999998777 777889999999999999999999999
Q ss_pred HHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 017532 234 RVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVL 313 (370)
Q Consensus 234 ~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l 313 (370)
+...+.+. ...-++ +..+..++..+....+++.|+..+.+++..+|....+-..+|.+....|++..|++.+
T Consensus 166 ~L~k~~~q-------~~~~eI-AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~ 237 (389)
T COG2956 166 RLVKLGGQ-------TYRVEI-AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEAL 237 (389)
T ss_pred HHHHcCCc-------cchhHH-HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHH
Confidence 98877655 344555 8889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHH
Q 017532 314 ENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSS 353 (370)
Q Consensus 314 ~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~ 353 (370)
+.+++.+|++ -..++--|...|.-. +..+....+|.
T Consensus 238 e~v~eQn~~y--l~evl~~L~~~Y~~l--g~~~~~~~fL~ 273 (389)
T COG2956 238 ERVLEQNPEY--LSEVLEMLYECYAQL--GKPAEGLNFLR 273 (389)
T ss_pred HHHHHhChHH--HHHHHHHHHHHHHHh--CCHHHHHHHHH
Confidence 9999999986 245556666777632 33455555554
No 80
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.35 E-value=2.5e-11 Score=109.63 Aligned_cols=249 Identities=14% Similarity=0.080 Sum_probs=155.9
Q ss_pred hHHHHHHcCChHHHHHHHHHhhhccccCCchHH--HHH-HHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCC
Q 017532 34 SLQDLATRGSWRTIIDNVSRARSQSLLTQPHHH--LTY-LAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIY 110 (370)
Q Consensus 34 ~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~--~~~-~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~ 110 (370)
..+.||+.|++++.|.+++.+++.|- .|. +.. +.-.+.++.-++.|+.|++.-.--..+. .+.
T Consensus 23 EGERLck~gdcraGv~ff~aA~qvGT----eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltla----------r~l 88 (639)
T KOG1130|consen 23 EGERLCKMGDCRAGVDFFKAALQVGT----EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLA----------RLL 88 (639)
T ss_pred HHHHHHhccchhhhHHHHHHHHHhcc----hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHH----------HHh
Confidence 67899999999999999999988761 111 111 1112345666677777765321100000 000
Q ss_pred CCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCC-
Q 017532 111 PNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKE- 189 (370)
Q Consensus 111 ~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~- 189 (370)
+++-| .|.....+|+.......|.+++..|.+.+.-... +.+ +-...++++++|++|..+|+
T Consensus 89 gdklG----------EAKssgNLGNtlKv~G~fdeA~~cc~rhLd~are--LgD-----rv~e~RAlYNlgnvYhakGk~ 151 (639)
T KOG1130|consen 89 GDKLG----------EAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARE--LGD-----RVLESRALYNLGNVYHAKGKC 151 (639)
T ss_pred cchhc----------cccccccccchhhhhcccchHHHHHHHHhHHHHH--HhH-----HHhhhHHHhhhhhhhhhcccc
Confidence 11111 1222355677777777777777677666532210 000 00115788899999888763
Q ss_pred -------------------HHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCcc
Q 017532 190 -------------------YNVCFDLMNESIGRGN-----GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFE 245 (370)
Q Consensus 190 -------------------~~~A~~~~~~~l~~~~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~ 245 (370)
++.|..+|..=++... ...-.++-+||..|.-+|+|+.|+.+-+.-+++.+.
T Consensus 152 ~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~e---- 227 (639)
T KOG1130|consen 152 TGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQE---- 227 (639)
T ss_pred cCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHH----
Confidence 3344455544443322 011234567888888899999999988888877665
Q ss_pred CCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh----CCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 246 DGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIER----DYN--DIVAINNKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 246 ~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~----~p~--~~~~~~nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
..+......++.|+|++++..|+|+.|+++|++.+.+ ... .+...+.+|.+|.-...+++||.+..+-+.+
T Consensus 228 ---fGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaI 304 (639)
T KOG1130|consen 228 ---FGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAI 304 (639)
T ss_pred ---hhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 2233333667888999999999999999999887654 222 3456678889999899999999999887665
Q ss_pred C
Q 017532 320 V 320 (370)
Q Consensus 320 ~ 320 (370)
.
T Consensus 305 A 305 (639)
T KOG1130|consen 305 A 305 (639)
T ss_pred H
Confidence 3
No 81
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.33 E-value=2.3e-10 Score=110.68 Aligned_cols=268 Identities=15% Similarity=0.054 Sum_probs=178.5
Q ss_pred cccccC-CCCCcCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCC
Q 017532 18 LTNAFG-SLNDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDF 96 (370)
Q Consensus 18 ~~~~~~-~~~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l 96 (370)
++.|+. .+.|..--+..-..+..+++..+|.+.+.++... +|.+....|...+.++-..+++.+|+...+...+-
T Consensus 467 le~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l----~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E 542 (799)
T KOG4162|consen 467 LEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALAL----NRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE 542 (799)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHh----cCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 344443 4566655566667788889999999998887544 45555666666677888899999999987766321
Q ss_pred CCCCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHH------HHHHHH-----------hh
Q 017532 97 NSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVR------EKLARK-----------LA 159 (370)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~------~~~~~~-----------~~ 159 (370)
-+-++ .+-.....+....++..++++.....+.... +...+. ..
T Consensus 543 ~~~N~-------------------~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~ 603 (799)
T KOG4162|consen 543 FGDNH-------------------VLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLAL 603 (799)
T ss_pred hhhhh-------------------hhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCc
Confidence 11000 0001122223445666777766655543332 000000 00
Q ss_pred HhhHHhH---------------------------------HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 017532 160 EKLEESV---------------------------------KSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNG 206 (370)
Q Consensus 160 ~~~~~~~---------------------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 206 (370)
+...+++ ..|... ...+...+..+...+.-++|..++.++-.+.|
T Consensus 604 ~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~-~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~- 681 (799)
T KOG4162|consen 604 SQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLL-QKLWLLAADLFLLSGNDDEARSCLLEASKIDP- 681 (799)
T ss_pred ccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHH-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcch-
Confidence 0000000 011110 23444667777788888888888888888888
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHH--HHHHHHh
Q 017532 207 LDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVR--EYEECIE 284 (370)
Q Consensus 207 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~--~~~~~l~ 284 (370)
..+..++..|.++...|.+++|.+.|..++.+.|+ . ..+...+|.++...|+..-|.. .+..+++
T Consensus 682 l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~------------h-v~s~~Ala~~lle~G~~~la~~~~~L~dalr 748 (799)
T KOG4162|consen 682 LSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD------------H-VPSMTALAELLLELGSPRLAEKRSLLSDALR 748 (799)
T ss_pred hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC------------C-cHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Confidence 88888888888888889999999888888855443 3 4556668888888887777777 8888888
Q ss_pred hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 285 RDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 285 ~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
+||.++.+|+.+|.++...|+.++|.++|..++++.++.
T Consensus 749 ~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 749 LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence 899999999999999999999999999998888887764
No 82
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.32 E-value=6e-10 Score=95.33 Aligned_cols=151 Identities=13% Similarity=0.016 Sum_probs=119.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHH
Q 017532 180 LIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVS 259 (370)
Q Consensus 180 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~ 259 (370)
-+..|+..|+++......++... + .. -+...++.++++..++++++..++ . ...|
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~--~-~~---------~~~~~~~~~~~i~~l~~~L~~~P~------------~-~~~w 76 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLAD--P-LH---------QFASQQTPEAQLQALQDKIRANPQ------------N-SEQW 76 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhC--c-cc---------cccCchhHHHHHHHHHHHHHHCCC------------C-HHHH
Confidence 34567888999887666544322 2 10 111267889999999999965443 3 6789
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHhCC--HHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 017532 260 RNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCL-MYLRD--LSDSIKVLENALERVPTVALNETLVVNLCSM 336 (370)
Q Consensus 260 ~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~-~~~g~--~~~A~~~l~~al~~~p~~~~~~~~~~nl~~l 336 (370)
..+|.++...|++++|+..|++++.++|+++.++.++|.++ ...|+ +++|++.++++++.+|++ ..++++++..
T Consensus 77 ~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~---~~al~~LA~~ 153 (198)
T PRK10370 77 ALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANE---VTALMLLASD 153 (198)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCC---hhHHHHHHHH
Confidence 99999999999999999999999999999999999999986 67787 599999999999999998 8899999999
Q ss_pred HHhccCCchhhHHHHHHHHhhhCC
Q 017532 337 YELAYVNHSDIKRTLSSWIGRVAP 360 (370)
Q Consensus 337 yel~~~~~~~~~~~ll~~~~~~~~ 360 (370)
+.. .+..+++....+.+....|
T Consensus 154 ~~~--~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 154 AFM--QADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHH--cCCHHHHHHHHHHHHhhCC
Confidence 874 4446777777776654433
No 83
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.30 E-value=3.6e-11 Score=104.92 Aligned_cols=112 Identities=21% Similarity=0.200 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 017532 211 LVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI 290 (370)
Q Consensus 211 ~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~ 290 (370)
-+-.-|.-.++.++|.+|+..|.+|+.+.|. . ...+.+++-+|.+.|.|+.|++.++.+|.+||..+
T Consensus 83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~------------n-AVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~ys 149 (304)
T KOG0553|consen 83 SLKNEGNKLMKNKDYQEAVDKYTEAIELDPT------------N-AVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYS 149 (304)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC------------c-chHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHH
Confidence 3455688999999999999999999976544 3 56689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Q 017532 291 VAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYE 338 (370)
Q Consensus 291 ~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lye 338 (370)
.+|..+|.+|+.+|++.+|++.|.++++++|++ +...-||...-.
T Consensus 150 kay~RLG~A~~~~gk~~~A~~aykKaLeldP~N---e~~K~nL~~Ae~ 194 (304)
T KOG0553|consen 150 KAYGRLGLAYLALGKYEEAIEAYKKALELDPDN---ESYKSNLKIAEQ 194 (304)
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHhhhccCCCc---HHHHHHHHHHHH
Confidence 999999999999999999999999999999998 666666655433
No 84
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.29 E-value=6.1e-10 Score=104.50 Aligned_cols=100 Identities=15% Similarity=0.117 Sum_probs=48.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHH
Q 017532 178 NCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNL 257 (370)
Q Consensus 178 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~ 257 (370)
..++.++...|++++|+..++++++..| .++..+..+|.++...|++++|+.++++++...+. ++.....
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~~p-~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~---------~~~~~~~ 187 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALELNP-DDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC---------SSMLRGH 187 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC---------CcchhHH
Confidence 3444455555555555555555555555 44445555555555555555555555555532211 1111122
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 017532 258 VSRNKALIYLVGKDYVSAVREYEECIERDY 287 (370)
Q Consensus 258 ~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p 287 (370)
.+..+|.++...|++++|+..|++++...|
T Consensus 188 ~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 188 NWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 334455555555555555555555544333
No 85
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.28 E-value=3.1e-10 Score=100.44 Aligned_cols=176 Identities=13% Similarity=0.034 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
.+++.+|.+|+.+|+-..|+..+.++++..| +...+....|.+++++|+++.|+.-|++++.-.+++ ....+.
T Consensus 73 ~aifrRaT~yLAmGksk~al~Dl~rVlelKp-DF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~------~~~~ea 145 (504)
T KOG0624|consen 73 QAIFRRATVYLAMGKSKAALQDLSRVLELKP-DFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSN------GLVLEA 145 (504)
T ss_pred HHHHHHHHHHhhhcCCccchhhHHHHHhcCc-cHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCc------chhHHH
Confidence 5678889999999999999999999999999 888888899999999999999999999998532221 111111
Q ss_pred --------HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchh
Q 017532 255 --------RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALN 326 (370)
Q Consensus 255 --------~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~ 326 (370)
..+........++..|++..|++...+.+++.|.+...+..++.||...|++..||..+..+-++..++
T Consensus 146 qskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~Dn--- 222 (504)
T KOG0624|consen 146 QSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDN--- 222 (504)
T ss_pred HHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccc---
Confidence 122334455667788999999999999999999999999999999999999999999999999887776
Q ss_pred HHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCCC
Q 017532 327 ETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDD 362 (370)
Q Consensus 327 ~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d~ 362 (370)
....|.+++++-- -++.+....-.+.+-...||+
T Consensus 223 Te~~ykis~L~Y~--vgd~~~sL~~iRECLKldpdH 256 (504)
T KOG0624|consen 223 TEGHYKISQLLYT--VGDAENSLKEIRECLKLDPDH 256 (504)
T ss_pred hHHHHHHHHHHHh--hhhHHHHHHHHHHHHccCcch
Confidence 7788999988653 344566666666666777774
No 86
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.28 E-value=5.8e-10 Score=109.60 Aligned_cols=150 Identities=17% Similarity=0.120 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
+-+...|+.++..|++++|..++.++|+.+| .++.+|+.||.+|.++||.++|....-.|.-+.++ +
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~---------d--- 206 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK---------D--- 206 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC---------C---
Confidence 3445667778888999999999999999999 99999999999999999999999999888865444 2
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcc--hhHHHHHH
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVA--LNETLVVN 332 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~--~~~~~~~n 332 (370)
...|...+.....+|.+.+|+-+|.++|..+|.+...+.+++..+.++|+...|+..+.+++...|... .....++.
T Consensus 207 -~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~ 285 (895)
T KOG2076|consen 207 -YELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRR 285 (895)
T ss_pred -hHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHH
Confidence 345888999999999999999999999999999999999999999999999999999999999999321 23445555
Q ss_pred HHHHHH
Q 017532 333 LCSMYE 338 (370)
Q Consensus 333 l~~lye 338 (370)
.+..|-
T Consensus 286 ~~~~~~ 291 (895)
T KOG2076|consen 286 VAHYFI 291 (895)
T ss_pred HHHHHH
Confidence 555543
No 87
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.27 E-value=1.8e-11 Score=86.08 Aligned_cols=66 Identities=33% Similarity=0.391 Sum_probs=63.8
Q ss_pred HHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCC
Q 017532 256 NLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLR-DLSDSIKVLENALERVP 321 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g-~~~~A~~~l~~al~~~p 321 (370)
+.+|..+|.+++..|++++|+..|+++++.+|+++.+++++|.++..+| ++++|++.++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 5678899999999999999999999999999999999999999999999 79999999999999998
No 88
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.27 E-value=1.6e-10 Score=108.10 Aligned_cols=111 Identities=13% Similarity=0.092 Sum_probs=95.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHH
Q 017532 179 CLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLV 258 (370)
Q Consensus 179 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~ 258 (370)
..|..++..|+|++|+..|+++++.+| .++.++..+|.++..+|++++|+..+++++++.+. . ..+
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~------------~-~~a 72 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELDPS------------L-AKA 72 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC------------C-HHH
Confidence 456777788999999999999999999 88999999999999999999999999999976443 2 567
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 017532 259 SRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYL 303 (370)
Q Consensus 259 ~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~ 303 (370)
++.+|.+++..|+|++|+..|++++.++|+++.+...++.|..+.
T Consensus 73 ~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 73 YLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999888888776555
No 89
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.27 E-value=2.8e-10 Score=97.63 Aligned_cols=127 Identities=13% Similarity=0.124 Sum_probs=115.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHH
Q 017532 176 VLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFR 255 (370)
Q Consensus 176 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~ 255 (370)
++..+|......|+|..|+..++++....| ++..+++.+|-+|.+.|+++.|..-|.+++++.+..
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~------------- 167 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAARLAP-TDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNE------------- 167 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhccCC-CChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCC-------------
Confidence 344577888899999999999999999999 999999999999999999999999999999887663
Q ss_pred HHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 017532 256 NLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENA 316 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~a 316 (370)
..+..|+|..++-.|+++.|..++..+....+.+..+..|++.+.-..|++++|..+-.+-
T Consensus 168 p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 168 PSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 3457889999999999999999999999998999999999999999999999998877653
No 90
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.26 E-value=6.1e-10 Score=104.47 Aligned_cols=164 Identities=12% Similarity=0.067 Sum_probs=102.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHH
Q 017532 179 CLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLV 258 (370)
Q Consensus 179 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~ 258 (370)
..+.++...|++++|...++++++..| .+..++.. +..+...|++..+.....+++.... ..+|.. ...
T Consensus 48 ~~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~~~~-~~~ 116 (355)
T cd05804 48 VEALSAWIAGDLPKALALLEQLLDDYP-RDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWA--------PENPDY-WYL 116 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHH-hHHHHHhcccccCchhHHHHHhccC--------cCCCCc-HHH
Confidence 455566677888888888888887777 66655554 5555555555444444444443211 223333 445
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHH
Q 017532 259 SRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV-ALNETLVVNLCSMY 337 (370)
Q Consensus 259 ~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~-~~~~~~~~nl~~ly 337 (370)
...+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..+++++...|.. .......++++.+|
T Consensus 117 ~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~ 196 (355)
T cd05804 117 LGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY 196 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence 55677777777777777777777777777777777777777777777777777777777776642 11122344566665
Q ss_pred HhccCCchhhHHHHHHHH
Q 017532 338 ELAYVNHSDIKRTLSSWI 355 (370)
Q Consensus 338 el~~~~~~~~~~~ll~~~ 355 (370)
.. .+..+....+++..
T Consensus 197 ~~--~G~~~~A~~~~~~~ 212 (355)
T cd05804 197 LE--RGDYEAALAIYDTH 212 (355)
T ss_pred HH--CCCHHHHHHHHHHH
Confidence 53 33456666665554
No 91
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.25 E-value=3.3e-09 Score=108.27 Aligned_cols=206 Identities=15% Similarity=0.042 Sum_probs=161.5
Q ss_pred HHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHH
Q 017532 73 NTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVRE 152 (370)
Q Consensus 73 ~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~ 152 (370)
++.+|...+++.+++.+++.+... +..+|-..+...+-.+...+.|.+|+..+..++.....
T Consensus 298 rl~aL~~r~r~~~vi~~y~~l~~~------------------~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~ 359 (822)
T PRK14574 298 RLGALLVRHQTADLIKEYEAMEAE------------------GYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGK 359 (822)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhc------------------CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccc
Confidence 467899999999999999999422 22244444444555557889999999999887643321
Q ss_pred HHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--------------CCHHHHHHHHHH
Q 017532 153 KLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNG--------------LDPILVSKLGFI 218 (370)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~--------------~~~~~~~~lg~~ 218 (370)
.. . ..... .....|.-.++..++|++|..+++++.+..|. +-......++.+
T Consensus 360 ~~-~-~~~~~------------~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~ 425 (822)
T PRK14574 360 TF-R-NSDDL------------LDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQS 425 (822)
T ss_pred cc-C-CCcch------------HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHH
Confidence 10 0 00000 11124556788899999999999999885440 123566788999
Q ss_pred HHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 017532 219 QMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKAL 298 (370)
Q Consensus 219 ~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~ 298 (370)
+...|++.+|++.+++.+...|.+ ..+.+.+|.++...|.+.+|...++.+..++|++..+...+|.
T Consensus 426 ~~~~gdl~~Ae~~le~l~~~aP~n-------------~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~ 492 (822)
T PRK14574 426 LVALNDLPTAQKKLEDLSSTAPAN-------------QNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAE 492 (822)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHH
Confidence 999999999999999999765543 5567889999999999999999999999999999999999999
Q ss_pred HHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 299 CLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 299 ~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
+++.+|++++|....+++++..|++
T Consensus 493 ~al~l~e~~~A~~~~~~l~~~~Pe~ 517 (822)
T PRK14574 493 TAMALQEWHQMELLTDDVISRSPED 517 (822)
T ss_pred HHHhhhhHHHHHHHHHHHHhhCCCc
Confidence 9999999999999999999999986
No 92
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.25 E-value=2.1e-10 Score=107.17 Aligned_cols=110 Identities=14% Similarity=0.075 Sum_probs=97.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 017532 212 VSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIV 291 (370)
Q Consensus 212 ~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~ 291 (370)
+...|..++..|++++|+.+|++++++.+.. ..++.++|.+++..|++++|+..+++++.++|+++.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~-------------~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~ 71 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNN-------------AELYADRAQANIKLGNFTEAVADANKAIELDPSLAK 71 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHH
Confidence 4556889999999999999999999765442 567889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Q 017532 292 AINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMY 337 (370)
Q Consensus 292 ~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~ly 337 (370)
+++++|.++..+|++++|+..|+++++++|++ ..+...+..+.
T Consensus 72 a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~---~~~~~~l~~~~ 114 (356)
T PLN03088 72 AYLRKGTACMKLEEYQTAKAALEKGASLAPGD---SRFTKLIKECD 114 (356)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHH
Confidence 99999999999999999999999999999987 55555555443
No 93
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.25 E-value=2e-10 Score=94.29 Aligned_cols=136 Identities=15% Similarity=0.186 Sum_probs=117.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 017532 213 SKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVA 292 (370)
Q Consensus 213 ~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~ 292 (370)
-.-|.-++..|+|++|.+.|..|+.+++.. ....++..+.|+|.+++++++++.|++.+.++|+++|.+..+
T Consensus 99 K~EGN~~F~ngdyeeA~skY~~Ale~cp~~--------~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kA 170 (271)
T KOG4234|consen 99 KKEGNELFKNGDYEEANSKYQEALESCPST--------STEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKA 170 (271)
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHhCccc--------cHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHH
Confidence 334778889999999999999999999873 224457889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhC
Q 017532 293 INNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVA 359 (370)
Q Consensus 293 ~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~ 359 (370)
+-.+|.+|.++.++++|++.|.++++.+|+. ..+.--+..|-.+..+.....|.+++.++...+
T Consensus 171 l~RRAeayek~ek~eealeDyKki~E~dPs~---~ear~~i~rl~~~i~ernEkmKee~m~kLKdlG 234 (271)
T KOG4234|consen 171 LERRAEAYEKMEKYEEALEDYKKILESDPSR---REAREAIARLPPKINERNEKMKEEMMEKLKDLG 234 (271)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhCcch---HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999997 666666666666666666688888888876543
No 94
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.23 E-value=9.7e-10 Score=105.92 Aligned_cols=135 Identities=19% Similarity=0.175 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
+++...+|...+..++|+++...++..++++| -....|+.+|.+.++.++++.|.+.|.+.+.+. |+
T Consensus 485 arA~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~------------Pd 551 (777)
T KOG1128|consen 485 ARAQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE------------PD 551 (777)
T ss_pred HHHHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC------------CC
Confidence 45556777778888999999999999999999 999999999999999999999999999999654 44
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
. ..+|.|++..|++.|+-.+|...+.++++.+-.++..|-|.-.+..+.|.+++|++.+.+.+.+.-.
T Consensus 552 ~-~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 552 N-AEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred c-hhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence 4 8899999999999999999999999999999999999999999999999999999999999877543
No 95
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.22 E-value=1.2e-09 Score=94.03 Aligned_cols=159 Identities=19% Similarity=0.155 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNG--LDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEV 252 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~--~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p 252 (370)
..++..|..++..|+|.+|+..|++++...|. .-+.+...+|.++...|++++|+..|++.++..|++ |
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~---------~ 76 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNS---------P 76 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT----------T
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---------c
Confidence 45678889999999999999999999999882 234778999999999999999999999999877663 2
Q ss_pred HHHHHHHHhHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCCHHH-----------------HHHHHHHHHHhC
Q 017532 253 EFRNLVSRNKALIYLVGKD-----------YVSAVREYEECIERDYNDIVA-----------------INNKALCLMYLR 304 (370)
Q Consensus 253 ~~~~~~~~~~g~~~~~~g~-----------~~eA~~~~~~~l~~~p~~~~~-----------------~~nla~~~~~~g 304 (370)
.. ..+++.+|.+++.+.+ ..+|+..|+..+...|+...+ -...|..|.+.|
T Consensus 77 ~~-~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~ 155 (203)
T PF13525_consen 77 KA-DYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRG 155 (203)
T ss_dssp TH-HHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred ch-hhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 23 5677888988877643 348999999999999986532 135688899999
Q ss_pred CHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCC
Q 017532 305 DLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVN 343 (370)
Q Consensus 305 ~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~ 343 (370)
.+..|+..++.+++..|+....+..++-+...|.....+
T Consensus 156 ~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~ 194 (203)
T PF13525_consen 156 KYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLK 194 (203)
T ss_dssp -HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-H
T ss_pred cHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCCh
Confidence 999999999999999999877778888888888765553
No 96
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=8.2e-09 Score=93.64 Aligned_cols=255 Identities=9% Similarity=-0.002 Sum_probs=170.3
Q ss_pred hHHHHHHcCChHHHHHHHHHhhhcccc----------------CCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCC
Q 017532 34 SLQDLATRGSWRTIIDNVSRARSQSLL----------------TQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFN 97 (370)
Q Consensus 34 ~l~~l~~~g~~~~Ai~~~~~~~~~~~~----------------~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~ 97 (370)
.+..+.....|+.|+..+..++++... ..|.+ .......+.|+-.+++-+.|...+.+...
T Consensus 49 l~~~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~-~e~~r~~aecy~~~~n~~~Ai~~l~~~p~-- 125 (564)
T KOG1174|consen 49 LLNANYKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGD-AEQRRRAAECYRQIGNTDMAIETLLQVPP-- 125 (564)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCccc-HHHHHHHHHHHHHHccchHHHHHHhcCCc--
Confidence 556677788889998888876554421 12222 22333457889999999999987766621
Q ss_pred CCCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHh-------------------
Q 017532 98 SSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKL------------------- 158 (370)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~------------------- 158 (370)
+... | -..++.+.+...-++..++.-++.+.+..|+-.+..-.
T Consensus 126 ---------------t~r~--p-~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e~~S~~m~~ 187 (564)
T KOG1174|consen 126 ---------------TLRS--P-RINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNEINSLVMHA 187 (564)
T ss_pred ---------------cccc--h-hHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchhhhhhhhhh
Confidence 1111 1 12455666666667777888888887777765543210
Q ss_pred --hHhhHHhHHHHHHHH---------------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 017532 159 --AEKLEESVKSWKKRE---------------------------IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDP 209 (370)
Q Consensus 159 --~~~~~~~~~~~~~~~---------------------------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 209 (370)
.....+-...|.... ...+..+|.+++..|++.+|+-.|+++...+| ...
T Consensus 188 ~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dp-y~i 266 (564)
T KOG1174|consen 188 ATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANP-DNV 266 (564)
T ss_pred eecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCCh-hhh
Confidence 001112233343332 34556788899999999999999999988888 332
Q ss_pred HH----------------------------------HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHH
Q 017532 210 IL----------------------------------VSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFR 255 (370)
Q Consensus 210 ~~----------------------------------~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~ 255 (370)
.. |..-|.+.+...+++.|..+-++++++. |..
T Consensus 267 ~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~------------~r~- 333 (564)
T KOG1174|consen 267 EAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE------------PRN- 333 (564)
T ss_pred hhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC------------ccc-
Confidence 22 2233344455667777777777777532 333
Q ss_pred HHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 256 NLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
..+++.+|..+...|+.++|+-.|+.+..+-|.+...|--+--+|+..|++.||...-+.++...|.+
T Consensus 334 ~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~s 401 (564)
T KOG1174|consen 334 HEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNS 401 (564)
T ss_pred chHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcc
Confidence 56677889999999999999999999998888888888888888888888877777777777766655
No 97
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.21 E-value=7.3e-10 Score=92.92 Aligned_cols=107 Identities=14% Similarity=0.209 Sum_probs=88.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017532 207 LDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD 286 (370)
Q Consensus 207 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~ 286 (370)
.....++.+|..+...|++++|+.+|++++.+.++. ++. ..++.++|.++...|++++|+..|++++..+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---------~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 102 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP---------NDR-SYILYNMGIIYASNGEHDKALEYYHQALELN 102 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc---------chH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 345677889999999999999999999998764431 112 4678889999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhCC--------------HHHHHHHHHHHHHhCCCc
Q 017532 287 YNDIVAINNKALCLMYLRD--------------LSDSIKVLENALERVPTV 323 (370)
Q Consensus 287 p~~~~~~~nla~~~~~~g~--------------~~~A~~~l~~al~~~p~~ 323 (370)
|.+..++.++|.++...|+ +++|++++++++..+|++
T Consensus 103 p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 103 PKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred cccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 9999999999999998887 577788888888878764
No 98
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=4.5e-09 Score=95.30 Aligned_cols=242 Identities=15% Similarity=0.026 Sum_probs=143.0
Q ss_pred CchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHH
Q 017532 62 QPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLD 141 (370)
Q Consensus 62 ~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~ 141 (370)
.|++...|.|.++.+.+..+....|...+--+.+... .++. +. +-.-.+.+.+..|+.++|+.
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~-----------lr~N----vh--Ll~~lak~~~~~Gdn~~a~~ 253 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTT-----------LRCN----EH--LMMALGKCLYYNGDYFQAED 253 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhcc-----------CCcc----HH--HHHHHhhhhhhhcCchHHHH
Confidence 3443334455566778877777777665544422211 0100 11 11123566688899999999
Q ss_pred HHHHHHHHHHHHHHH---Hh-----hHhhHHhHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 017532 142 RFYELLDFVREKLAR---KL-----AEKLEESVKSWKKRE------IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGL 207 (370)
Q Consensus 142 ~l~~ll~~~~~~~~~---~~-----~~~~~~~~~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 207 (370)
.|+......+-.+.. +. .+...+..++-.... +.-++.-+.+++..++|..|+.+.++.|+.++ .
T Consensus 254 ~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r 332 (564)
T KOG1174|consen 254 IFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-R 332 (564)
T ss_pred HHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-c
Confidence 998865333222211 10 000111111111101 22344556677788999999999999999999 8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHH-----------
Q 017532 208 DPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAV----------- 276 (370)
Q Consensus 208 ~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~----------- 276 (370)
+..++...|+++.++|+.++|+-.|..|..+.|.. -+.+-.+-.+|...|++.||.
T Consensus 333 ~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r-------------L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~ 399 (564)
T KOG1174|consen 333 NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYR-------------LEIYRGLFHSYLAQKRFKEANALANWTIRLFQ 399 (564)
T ss_pred cchHHHhccHHHHhccchHHHHHHHHHHHhcchhh-------------HHHHHHHHHHHHhhchHHHHHHHHHHHHHHhh
Confidence 89999999999999999999999999999765431 333444445555555555554
Q ss_pred -------------------------HHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHH
Q 017532 277 -------------------------REYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVV 331 (370)
Q Consensus 277 -------------------------~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~ 331 (370)
+.+++++.++|....+.+.+|..+...|++.++++.+++.+...|+ ..+..
T Consensus 400 ~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D----~~LH~ 475 (564)
T KOG1174|consen 400 NSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD----VNLHN 475 (564)
T ss_pred cchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc----cHHHH
Confidence 4444555555555555555555555566666666666666655554 34445
Q ss_pred HHHHHHH
Q 017532 332 NLCSMYE 338 (370)
Q Consensus 332 nl~~lye 338 (370)
.|+.+..
T Consensus 476 ~Lgd~~~ 482 (564)
T KOG1174|consen 476 HLGDIMR 482 (564)
T ss_pred HHHHHHH
Confidence 5555544
No 99
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.20 E-value=1.8e-09 Score=87.79 Aligned_cols=123 Identities=15% Similarity=0.111 Sum_probs=104.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHH
Q 017532 183 YHLSSKEYNVCFDLMNESIGRGNGLD---PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVS 259 (370)
Q Consensus 183 ~~~~~g~~~~A~~~~~~~l~~~~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~ 259 (370)
.....++...+...++.++..+| .. ..+...+|.+++..|++++|...|++++.. ..++.....+.
T Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~~-~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~----------~~d~~l~~~a~ 88 (145)
T PF09976_consen 20 QALQAGDPAKAEAAAEQLAKDYP-SSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN----------APDPELKPLAR 88 (145)
T ss_pred HHHHCCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh----------CCCHHHHHHHH
Confidence 33468999999999999999999 66 355678999999999999999999999953 23455556778
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 017532 260 RNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENAL 317 (370)
Q Consensus 260 ~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al 317 (370)
+.+|.+++..|++++|+..++. +...+..+.++..+|.++...|++++|+..|++++
T Consensus 89 l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 89 LRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 8899999999999999999976 34445567788899999999999999999999874
No 100
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.20 E-value=5e-10 Score=87.40 Aligned_cols=105 Identities=13% Similarity=0.154 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017532 209 PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYN 288 (370)
Q Consensus 209 ~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~ 288 (370)
+..++.+|..+...|++++|++.|+++++..+++ +.. ..+++.+|.+++..|++++|+..|++++..+|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 71 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKS---------TYA-PNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK 71 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc---------ccc-HHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC
Confidence 3567788888888999999999998888654431 111 345677889999999999999999999888777
Q ss_pred C---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 289 D---IVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 289 ~---~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
+ +.++.++|.++...|++++|+..+++++...|+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 72 SPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred CCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence 5 5678888999999999999999999999888875
No 101
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.19 E-value=2.3e-08 Score=97.00 Aligned_cols=61 Identities=25% Similarity=0.346 Sum_probs=49.1
Q ss_pred HHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCC
Q 017532 36 QDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGY 101 (370)
Q Consensus 36 ~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~ 101 (370)
.-+..+|++++|++.+....... + |...+.-.++..|+++|++++|...+..+.+.++.+.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I----~-Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~ 72 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQI----L-DKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNY 72 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhC----C-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Confidence 45688999999999988854433 2 3466777789999999999999999999988876444
No 102
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.17 E-value=2.9e-08 Score=94.82 Aligned_cols=251 Identities=12% Similarity=-0.002 Sum_probs=168.0
Q ss_pred hHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhh-hcCHHHHHHHhhhcCCCCCCCCcccccCCCCCC
Q 017532 34 SLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMK-LRRFDEAQQELDSLEDFNSSGYQYETYPHIYPN 112 (370)
Q Consensus 34 ~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~-l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~ 112 (370)
..+.+.+.+.++-|...|..+++. .|.+ ..+|.++.-+-+ -|..+.-.+.++++..--
T Consensus 522 da~~~~k~~~~~carAVya~alqv----fp~k--~slWlra~~~ek~hgt~Esl~Allqkav~~~--------------- 580 (913)
T KOG0495|consen 522 DAQSCEKRPAIECARAVYAHALQV----FPCK--KSLWLRAAMFEKSHGTRESLEALLQKAVEQC--------------- 580 (913)
T ss_pred hHHHHHhcchHHHHHHHHHHHHhh----ccch--hHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC---------------
Confidence 345667777888888888776554 4664 333444433332 355666666666553211
Q ss_pred CCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHH---HHH-----HHhhHhhHHhHHHHHHHH-----HHHHHH
Q 017532 113 RTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVRE---KLA-----RKLAEKLEESVKSWKKRE-----IFVLNC 179 (370)
Q Consensus 113 ~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~---~~~-----~~~~~~~~~~~~~~~~~~-----~~~~~~ 179 (370)
+.+- .+.++.+......|+...|...+..+....+. +.- .....+.+++-.+..+.. .+++.-
T Consensus 581 -pkae---~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mK 656 (913)
T KOG0495|consen 581 -PKAE---ILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMK 656 (913)
T ss_pred -Ccch---hHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHH
Confidence 1111 22334444444557877777776665433211 110 001122223333332222 567777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHH
Q 017532 180 LIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVS 259 (370)
Q Consensus 180 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~ 259 (370)
-+.+....++.++|+.+++++++..| +...+|..+|+++.++++++.|...|.+..+.+|.. .-.|
T Consensus 657 s~~~er~ld~~eeA~rllEe~lk~fp-~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~-------------ipLW 722 (913)
T KOG0495|consen 657 SANLERYLDNVEEALRLLEEALKSFP-DFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS-------------IPLW 722 (913)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHHhCC-chHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC-------------chHH
Confidence 77777788999999999999999999 999999999999999999999999999999877753 3356
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 260 RNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 260 ~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
+.++.+--+.|+.-.|...++++.-.+|.+...|.-....-.+.|..++|...+.+|++..|+.
T Consensus 723 llLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~s 786 (913)
T KOG0495|consen 723 LLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSS 786 (913)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc
Confidence 6677777778888888888888888888888887777777777888888888888888777764
No 103
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.17 E-value=1.1e-09 Score=87.89 Aligned_cols=117 Identities=9% Similarity=-0.005 Sum_probs=100.2
Q ss_pred HHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHH
Q 017532 230 KSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDS 309 (370)
Q Consensus 230 ~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A 309 (370)
++|+++++ .+|+. ......+|.+++..|++++|+..|++++..+|.++.++.++|.++...|++++|
T Consensus 4 ~~~~~~l~------------~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A 70 (135)
T TIGR02552 4 ATLKDLLG------------LDSEQ-LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEA 70 (135)
T ss_pred hhHHHHHc------------CChhh-HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 35777774 34444 566788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCCCCC
Q 017532 310 IKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDDFD 364 (370)
Q Consensus 310 ~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d~~~ 364 (370)
+..+++++..+|++ ....++++.+|... +..+....+++..-+..|++..
T Consensus 71 ~~~~~~~~~~~p~~---~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 71 IDAYALAAALDPDD---PRPYFHAAECLLAL--GEPESALKALDLAIEICGENPE 120 (135)
T ss_pred HHHHHHHHhcCCCC---hHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhccccch
Confidence 99999999999987 88889999999854 4477777788877777777643
No 104
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.17 E-value=7.3e-10 Score=86.45 Aligned_cols=109 Identities=14% Similarity=-0.014 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccch
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLD---PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSE 251 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~ 251 (370)
.+++.+|..+...|++++|+..|.+++..+| ++ ..+++.+|.++...|++++|+.+|++++...+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--------- 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYP-KSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS--------- 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC---------
Confidence 4678899999999999999999999999888 54 5688999999999999999999999999765542
Q ss_pred HHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 017532 252 VEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAIN 294 (370)
Q Consensus 252 p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~ 294 (370)
+.. ..++..+|.++...|++++|+..|+++++..|++..+..
T Consensus 73 ~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 73 PKA-PDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred Ccc-cHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 111 456788999999999999999999999999999876543
No 105
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=6.3e-10 Score=101.17 Aligned_cols=84 Identities=20% Similarity=0.226 Sum_probs=74.7
Q ss_pred HHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Q 017532 256 NLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCS 335 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~ 335 (370)
...+.|++.|+.++++|.+|+..+.++|+.+|+|..+++..|.+++..|+++.|+..|++++++.|++ ..+...|..
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N---ka~~~el~~ 333 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSN---KAARAELIK 333 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc---HHHHHHHHH
Confidence 55678999999999999999999999999999999999999999999999999999999999999998 666666666
Q ss_pred HHHhccC
Q 017532 336 MYELAYV 342 (370)
Q Consensus 336 lyel~~~ 342 (370)
+-+..+.
T Consensus 334 l~~k~~~ 340 (397)
T KOG0543|consen 334 LKQKIRE 340 (397)
T ss_pred HHHHHHH
Confidence 6554333
No 106
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.16 E-value=1.3e-09 Score=87.65 Aligned_cols=98 Identities=12% Similarity=0.010 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
...+.+|..++..|++++|...|+-+...+| .+...|+.||.++-.+|++++|+..|.++..+.++.
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd------------ 102 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA------------ 102 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC------------
Confidence 4557888999999999999999999999999 999999999999999999999999999999775542
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERD 286 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~ 286 (370)
...+.+.|.|++..|+.+.|.+.|+.++...
T Consensus 103 -p~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 103 -PQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred -chHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 3457889999999999999999999999876
No 107
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.16 E-value=4.7e-09 Score=97.32 Aligned_cols=136 Identities=13% Similarity=0.088 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
....+-.+..++..|++++|...++.+++..| +++..+...+.+++..|+.++|.+.+++++.+.|.
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~------------ 372 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALALDPN------------ 372 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------------
Confidence 56777888899999999999999999999999 99999999999999999999999999999976444
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
. ...++++|..+++.|++.+|+..++..+..+|+++..|..+|.+|..+|+..+|.....+........
T Consensus 373 ~-~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~ 441 (484)
T COG4783 373 S-PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRL 441 (484)
T ss_pred c-cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCH
Confidence 2 55688999999999999999999999999999999999999988888888888888777777766654
No 108
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.16 E-value=1.6e-09 Score=90.45 Aligned_cols=126 Identities=15% Similarity=0.157 Sum_probs=100.2
Q ss_pred CCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHH
Q 017532 188 KEYNVCFDLMNESIGRGN-GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIY 266 (370)
Q Consensus 188 g~~~~A~~~~~~~l~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~ 266 (370)
+.|..+...+..+++..+ ......++.+|.++...|++++|+..|++++.+.++ .+.. ..++.++|.++
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~---------~~~~-~~~~~~lg~~~ 82 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID---------PYDR-SYILYNIGLIH 82 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc---------chhh-HHHHHHHHHHH
Confidence 557777777777765555 123567799999999999999999999999976432 1122 56789999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-------HhCCHH-------HHHHHHHHHHHhCCCc
Q 017532 267 LVGKDYVSAVREYEECIERDYNDIVAINNKALCLM-------YLRDLS-------DSIKVLENALERVPTV 323 (370)
Q Consensus 267 ~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~-------~~g~~~-------~A~~~l~~al~~~p~~ 323 (370)
...|++++|+..|++++.++|.....++++|.++. ..|+++ +|+..+++++..+|..
T Consensus 83 ~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 83 TSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 99999999999999999999999999999999998 777766 5566666677777754
No 109
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.15 E-value=1.3e-08 Score=89.83 Aligned_cols=167 Identities=12% Similarity=0.089 Sum_probs=132.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchH
Q 017532 176 VLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPIL---VSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEV 252 (370)
Q Consensus 176 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~---~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p 252 (370)
.++..|..++..|+|++|+..|++++...| ..+.+ .+.+|.++.+.|++++|+..|++.++..|++ |
T Consensus 34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP-~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~---------~ 103 (243)
T PRK10866 34 EIYATAQQKLQDGNWKQAITQLEALDNRYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH---------P 103 (243)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCC---------C
Confidence 345677788889999999999999999999 66544 4889999999999999999999999877663 3
Q ss_pred HHHHHHHHhHHHHHHHcCC------------------HHHHHHHHHHHHhhCCCCHHH-----------------HHHHH
Q 017532 253 EFRNLVSRNKALIYLVGKD------------------YVSAVREYEECIERDYNDIVA-----------------INNKA 297 (370)
Q Consensus 253 ~~~~~~~~~~g~~~~~~g~------------------~~eA~~~~~~~l~~~p~~~~~-----------------~~nla 297 (370)
+. ..+++.+|.+++..++ ..+|+..|++.+...|+...+ -...|
T Consensus 104 ~~-~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia 182 (243)
T PRK10866 104 NI-DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVA 182 (243)
T ss_pred ch-HHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 6778889988755541 357889999999999986522 12467
Q ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHH
Q 017532 298 LCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWI 355 (370)
Q Consensus 298 ~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~ 355 (370)
.-|.+.|++..|+.-++.+++..|+....+.+++-+...|..... .+.....+..+
T Consensus 183 ~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~--~~~a~~~~~~l 238 (243)
T PRK10866 183 EYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQL--NAQADKVAKII 238 (243)
T ss_pred HHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCC--hHHHHHHHHHH
Confidence 789999999999999999999999987778999999988864333 44454444433
No 110
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.15 E-value=1.1e-08 Score=103.74 Aligned_cols=149 Identities=15% Similarity=0.137 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
.+++.+|.+|-++|++++|...|+++++.+| .++.+++++|..|... ++++|++++.+|+.
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~----------------- 177 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKADR-DNPEIVKKLATSYEEE-DKEKAITYLKKAIY----------------- 177 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH-----------------
Confidence 4778999999999999999999999999999 9999999999999999 99999999999984
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH--------------------HHHHHHHHHhCCHHHHHHHHH
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAI--------------------NNKALCLMYLRDLSDSIKVLE 314 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~--------------------~nla~~~~~~g~~~~A~~~l~ 314 (370)
.++..++|.++.+++.+.++.+|++...+ .-+-.+|...+++++++.++.
T Consensus 178 ----------~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK 247 (906)
T PRK14720 178 ----------RFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILK 247 (906)
T ss_pred ----------HHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 14556688888888888888888765432 223377888999999999999
Q ss_pred HHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHh
Q 017532 315 NALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIG 356 (370)
Q Consensus 315 ~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~ 356 (370)
.+++.+|++ ..+.+.++..|--.+.+ .....+.++..+
T Consensus 248 ~iL~~~~~n---~~a~~~l~~~y~~kY~~-~~~~ee~l~~s~ 285 (906)
T PRK14720 248 KILEHDNKN---NKAREELIRFYKEKYKD-HSLLEDYLKMSD 285 (906)
T ss_pred HHHhcCCcc---hhhHHHHHHHHHHHccC-cchHHHHHHHhc
Confidence 999999998 88899999888743333 355555554443
No 111
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.15 E-value=2.2e-08 Score=85.45 Aligned_cols=135 Identities=18% Similarity=0.075 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
++...-|..+-..|+|++|+++|+.+++.+| .+..++-..--+...+|+--+|++.+..-++.+.. |
T Consensus 87 RV~~lkam~lEa~~~~~~A~e~y~~lL~ddp-t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~---------D--- 153 (289)
T KOG3060|consen 87 RVGKLKAMLLEATGNYKEAIEYYESLLEDDP-TDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMN---------D--- 153 (289)
T ss_pred hHHHHHHHHHHHhhchhhHHHHHHHHhccCc-chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcC---------c---
Confidence 3444556677788999999999999999999 88777766666777789988999999999876544 2
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHhCCCc
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRD---LSDSIKVLENALERVPTV 323 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~---~~~A~~~l~~al~~~p~~ 323 (370)
.++|..++.+|+..|+|++|.-+|++++-+.|.++..+-.+|.+++..|. +.-|.++|+++++++|.+
T Consensus 154 -~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~ 224 (289)
T KOG3060|consen 154 -QEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKN 224 (289)
T ss_pred -HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh
Confidence 67799999999999999999999999999999999999999999988764 678999999999999965
No 112
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.13 E-value=1.1e-09 Score=80.65 Aligned_cols=99 Identities=24% Similarity=0.318 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 017532 211 LVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI 290 (370)
Q Consensus 211 ~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~ 290 (370)
+++.+|.++...|++++|+..|+++++..+. . ..++..+|.++...|++++|++.|++++...|.+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------------~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 68 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPD------------N-ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA 68 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCc------------c-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence 4678899999999999999999999864332 1 35677899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 291 VAINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 291 ~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
.++..+|.++...|++++|...++++++.+|+
T Consensus 69 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 69 KAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999988773
No 113
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.11 E-value=5.7e-09 Score=94.65 Aligned_cols=197 Identities=15% Similarity=0.129 Sum_probs=132.2
Q ss_pred cccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC-
Q 017532 131 IKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGN-GLD- 208 (370)
Q Consensus 131 ~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-~~~- 208 (370)
...|++.+|.+.+......... ... ...+ +..+...+.++. ..++++|+..|++++.... .++
T Consensus 46 k~~~~~~~A~~ay~kAa~~~~~-~~~-----~~~A--------a~~~~~Aa~~~k-~~~~~~Ai~~~~~A~~~y~~~G~~ 110 (282)
T PF14938_consen 46 KLAKDWEKAAEAYEKAADCYEK-LGD-----KFEA--------AKAYEEAANCYK-KGDPDEAIECYEKAIEIYREAGRF 110 (282)
T ss_dssp HHTT-CHHHHHHHHHHHHHHHH-TT------HHHH--------HHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHCT-H
T ss_pred HHHhccchhHHHHHHHHHHHHH-cCC-----HHHH--------HHHHHHHHHHHH-hhCHHHHHHHHHHHHHHHHhcCcH
Confidence 4457778888877776433322 111 0011 233445555554 4599999999999987643 122
Q ss_pred ---HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHh
Q 017532 209 ---PILVSKLGFIQMQV-GDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIE 284 (370)
Q Consensus 209 ---~~~~~~lg~~~~~~-g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~ 284 (370)
...+..+|.+|... |++++|+++|++|..+.... ..+..........|.++...|+|++|++.|+++..
T Consensus 111 ~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e-------~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 111 SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE-------GSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT-------T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC-------CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35678899999999 99999999999999987763 23333477788899999999999999999999987
Q ss_pred hCCC----C--H-HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhH--HHHHHHHHHHHhccCCchhhHHHHH
Q 017532 285 RDYN----D--I-VAINNKALCLMYLRDLSDSIKVLENALERVPTVALNE--TLVVNLCSMYELAYVNHSDIKRTLS 352 (370)
Q Consensus 285 ~~p~----~--~-~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~--~~~~nl~~lyel~~~~~~~~~~~ll 352 (370)
..-+ . . ..+.+.++|++..|++..|...+++....+|.+.... .++.+|...|+ +++.+.....+
T Consensus 184 ~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~---~~D~e~f~~av 257 (282)
T PF14938_consen 184 KCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE---EGDVEAFTEAV 257 (282)
T ss_dssp TCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH---TT-CCCHHHHC
T ss_pred HhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH---hCCHHHHHHHH
Confidence 5321 1 1 3556788999999999999999999999999875433 34445555554 44444444433
No 114
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=4.3e-09 Score=92.59 Aligned_cols=122 Identities=13% Similarity=0.084 Sum_probs=106.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHH
Q 017532 189 EYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLV 268 (370)
Q Consensus 189 ~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~ 268 (370)
+.+.-+.-++.-+..+| +|..-|..||.+|+.+|+++.|...|.++.++.+++ .+++..+|.+++.
T Consensus 137 ~~~~l~a~Le~~L~~nP-~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n-------------~~~~~g~aeaL~~ 202 (287)
T COG4235 137 EMEALIARLETHLQQNP-GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDN-------------PEILLGLAEALYY 202 (287)
T ss_pred cHHHHHHHHHHHHHhCC-CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC-------------HHHHHHHHHHHHH
Confidence 46667778888999999 999999999999999999999999999999987663 3445666766655
Q ss_pred cC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcc
Q 017532 269 GK---DYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVA 324 (370)
Q Consensus 269 ~g---~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~ 324 (370)
+. ...+|...|++++..||.|..+.+.+|..++..|++.+|+..++.++...|...
T Consensus 203 ~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 203 QAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred hcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 43 457889999999999999999999999999999999999999999999998753
No 115
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.11 E-value=3.1e-09 Score=96.17 Aligned_cols=228 Identities=14% Similarity=0.153 Sum_probs=155.1
Q ss_pred ChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhh-cCHHHHHHHhhhcCCCCCCCCcccccCCC
Q 017532 31 DLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKL-RRFDEAQQELDSLEDFNSSGYQYETYPHI 109 (370)
Q Consensus 31 ~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l-~~~~~A~~~~~~~~~l~~~~~~~~~~~~~ 109 (370)
+.=..+..|..|++..++.-... + .+|. ...+.. ...++.. +.-+.+...++....-.
T Consensus 38 ~~~~~Rs~iAlg~~~~vl~ei~~----~--~~~~--l~av~~-la~y~~~~~~~e~~l~~l~~~~~~~------------ 96 (290)
T PF04733_consen 38 DFYQYRSYIALGQYDSVLSEIKK----S--SSPE--LQAVRL-LAEYLSSPSDKESALEELKELLADQ------------ 96 (290)
T ss_dssp HHHHHHHHHHTT-HHHHHHHS-T----T--SSCC--CHHHHH-HHHHHCTSTTHHCHHHHHHHCCCTS------------
T ss_pred HHHHHHHHHHcCChhHHHHHhcc----C--CChh--HHHHHH-HHHHHhCccchHHHHHHHHHHHHhc------------
Confidence 44477889999999988854322 1 2343 222221 2234443 45566666665542111
Q ss_pred CCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 017532 110 YPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKE 189 (370)
Q Consensus 110 ~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 189 (370)
.+...+ ..+++.+.+....|++++|+..+... .. . +.....+.+++.+++
T Consensus 97 ----~~~~~~-~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~------------l--------E~~al~Vqi~L~~~R 146 (290)
T PF04733_consen 97 ----AGESNE-IVQLLAATILFHEGDYEEALKLLHKG-----GS------------L--------ELLALAVQILLKMNR 146 (290)
T ss_dssp -------CHH-HHHHHHHHHHCCCCHHHHHHCCCTTT-----TC------------H--------HHHHHHHHHHHHTT-
T ss_pred ----cccccH-HHHHHHHHHHHHcCCHHHHHHHHHcc-----Cc------------c--------cHHHHHHHHHHHcCC
Confidence 110111 34677777778889999888776542 00 0 222356678999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHH
Q 017532 190 YNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVG--DLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYL 267 (370)
Q Consensus 190 ~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~ 267 (370)
++.|...++.+.+.+. +...+....+++.+..| .+.+|...|++.... .+.. ...+..++.+++
T Consensus 147 ~dlA~k~l~~~~~~~e-D~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~------------~~~t-~~~lng~A~~~l 212 (290)
T PF04733_consen 147 PDLAEKELKNMQQIDE-DSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK------------FGST-PKLLNGLAVCHL 212 (290)
T ss_dssp HHHHHHHHHHHHCCSC-CHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC------------S--S-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc------------cCCC-HHHHHHHHHHHH
Confidence 9999999999988877 66655666677777766 589999999997631 1111 445778999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHhCCCc
Q 017532 268 VGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDL-SDSIKVLENALERVPTV 323 (370)
Q Consensus 268 ~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~-~~A~~~l~~al~~~p~~ 323 (370)
.+|+|++|.+.+++++..+|+++.++.|++++...+|+. +.+.+++.++...+|+.
T Consensus 213 ~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 213 QLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred HhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999999999 66777888888889975
No 116
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.08 E-value=1.2e-08 Score=99.52 Aligned_cols=136 Identities=12% Similarity=0.011 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHhhcCC
Q 017532 175 FVLNCLIGYHLSSKE---YNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVG--------DLEGAKKSFNRVEEMLNEGK 243 (370)
Q Consensus 175 ~~~~~la~~~~~~g~---~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g--------~~~~A~~~~~~a~~l~~~~~ 243 (370)
.-++..|..++..++ ...|+.+|+++++.+| ++..++..++.++.... ++..+.+..+++..+..+
T Consensus 340 y~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP-~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~-- 416 (517)
T PRK10153 340 LTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEP-DFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPEL-- 416 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccC--
Confidence 344566666665544 8899999999999999 99988888888775542 234555555555433111
Q ss_pred ccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 244 FEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 244 ~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
..+| .++..+|..+...|++++|...|+++++++| +..+|..+|.++...|++++|++.|++|+.++|.+
T Consensus 417 -----~~~~----~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 417 -----NVLP----RIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE 486 (517)
T ss_pred -----cCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 2233 4466678888899999999999999999999 58899999999999999999999999999999985
No 117
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.06 E-value=3.4e-08 Score=95.77 Aligned_cols=208 Identities=16% Similarity=0.076 Sum_probs=152.3
Q ss_pred HHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 017532 126 YAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGN 205 (370)
Q Consensus 126 ~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 205 (370)
.+.+....|++++|++.+.+........ ..++..+|.++++.|++++|...|..++..+|
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~I~Dk--------------------~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP 69 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQILDK--------------------LAVLEKRAELLLKLGRKEEAEKIYRELIDRNP 69 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhhCCCH--------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 4444566799999998875532221111 13344778899999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHhhcC--------------------------------------
Q 017532 206 GLDPILVSKLGFIQMQV-----GDLEGAKKSFNRVEEMLNEG-------------------------------------- 242 (370)
Q Consensus 206 ~~~~~~~~~lg~~~~~~-----g~~~~A~~~~~~a~~l~~~~-------------------------------------- 242 (370)
++...+..+..+.... ++.+.-.+.|++.....|..
T Consensus 70 -dn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~ 148 (517)
T PF12569_consen 70 -DNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSN 148 (517)
T ss_pred -CcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 8887777766665222 24555566666611111100
Q ss_pred -----------------------------Cc---cCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 017532 243 -----------------------------KF---EDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI 290 (370)
Q Consensus 243 -----------------------------~~---~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~ 290 (370)
.. ++.....|....++++.++..|-..|++++|+++.+++|+..|..+
T Consensus 149 lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ 228 (517)
T PF12569_consen 149 LKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLV 228 (517)
T ss_pred HHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcH
Confidence 00 0001223444457778899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhC
Q 017532 291 VAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVA 359 (370)
Q Consensus 291 ~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~ 359 (370)
..|...|.++...|++.+|.+.++.+-.+|+. +..+.+-+.=|.|.. +..+.+.+++..+-+.+
T Consensus 229 ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~----DRyiNsK~aKy~LRa-~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 229 ELYMTKARILKHAGDLKEAAEAMDEARELDLA----DRYINSKCAKYLLRA-GRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh----hHHHHHHHHHHHHHC-CCHHHHHHHHHhhcCCC
Confidence 99999999999999999999999999999987 677888888888754 45688888887775544
No 118
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.06 E-value=6.7e-10 Score=77.02 Aligned_cols=63 Identities=21% Similarity=0.194 Sum_probs=59.4
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 261 NKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 261 ~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
.+|..++..|++++|++.|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 479999999999999999999999999999999999999999999999999999999999974
No 119
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.06 E-value=2.9e-09 Score=78.35 Aligned_cols=99 Identities=18% Similarity=0.212 Sum_probs=87.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHH
Q 017532 176 VLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFR 255 (370)
Q Consensus 176 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~ 255 (370)
+++.+|..+...|++++|+..++++++..| .+..++..+|.++...|++++|+++|++++.+.+..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~------------- 67 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN------------- 67 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc-------------
Confidence 456888999999999999999999999999 888899999999999999999999999999654331
Q ss_pred HHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017532 256 NLVSRNKALIYLVGKDYVSAVREYEECIERDYN 288 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~ 288 (370)
...+..+|.++...|++++|...+++++..+|.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 68 AKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 346778999999999999999999999988773
No 120
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.05 E-value=7.4e-07 Score=86.92 Aligned_cols=294 Identities=13% Similarity=0.061 Sum_probs=186.0
Q ss_pred HHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCc
Q 017532 37 DLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGS 116 (370)
Q Consensus 37 ~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 116 (370)
.+...|+|..+.+.++++.--. -.....|.. ...++...|.--.|...++....+.+ ..+
T Consensus 332 al~~~g~f~~lae~fE~~~~~~----~~~~e~w~~-~als~saag~~s~Av~ll~~~~~~~~---------------~ps 391 (799)
T KOG4162|consen 332 ALSRCGQFEVLAEQFEQALPFS----FGEHERWYQ-LALSYSAAGSDSKAVNLLRESLKKSE---------------QPS 391 (799)
T ss_pred HHHHHHHHHHHHHHHHHHhHhh----hhhHHHHHH-HHHHHHHhccchHHHHHHHhhccccc---------------CCC
Confidence 4556666666666666642111 011122222 24556666666666666655543321 000
Q ss_pred ccchhHHHHHHH-cCcccCCccchHHHHHHHHHHHHHHHHH------------H------------hhHhhHHhHHHHHH
Q 017532 117 MVPFSLRWLYAV-LPIKLSNRQVGLDRFYELLDFVREKLAR------------K------------LAEKLEESVKSWKK 171 (370)
Q Consensus 117 ~~~~~~r~l~a~-~~~~~g~~~~al~~l~~ll~~~~~~~~~------------~------------~~~~~~~~~~~~~~ 171 (370)
++.. -++.+. +.-..+...++++....++..+...... + .......++....+
T Consensus 392 -~~s~-~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~ 469 (799)
T KOG4162|consen 392 -DISV-LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEE 469 (799)
T ss_pred -cchH-HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHH
Confidence 1111 122222 2356688888888887777644222100 0 00011122222222
Q ss_pred HH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcC---
Q 017532 172 RE------IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEG--- 242 (370)
Q Consensus 172 ~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~--- 242 (370)
.. ..+.+.++..|...++.+.|....+++++.++.++...|..++.++.-.+++.+|+...+.++.-.+++
T Consensus 470 av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l 549 (799)
T KOG4162|consen 470 AVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVL 549 (799)
T ss_pred HHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhh
Confidence 21 467788888888889999999999999999766888888888888888888888877766533222220
Q ss_pred ----------------------------C----------------------------c------------------cCC-
Q 017532 243 ----------------------------K----------------------------F------------------EDG- 247 (370)
Q Consensus 243 ----------------------------~----------------------------~------------------~~~- 247 (370)
+ . ..+
T Consensus 550 ~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~s 629 (799)
T KOG4162|consen 550 MDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGS 629 (799)
T ss_pred chhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccc
Confidence 0 0 000
Q ss_pred -----------------------------------------------ccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHH
Q 017532 248 -----------------------------------------------LLSEVEFRNLVSRNKALIYLVGKDYVSAVREYE 280 (370)
Q Consensus 248 -----------------------------------------------~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~ 280 (370)
...+|.. ..++...|.++...|++.||.+.|.
T Consensus 630 e~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~-~~~~~~~G~~~~~~~~~~EA~~af~ 708 (799)
T KOG4162|consen 630 ELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLS-ASVYYLRGLLLEVKGQLEEAKEAFL 708 (799)
T ss_pred ccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhh-HHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 0112222 4556778899999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhCCHHHHHH--HHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhh
Q 017532 281 ECIERDYNDIVAINNKALCLMYLRDLSDSIK--VLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRV 358 (370)
Q Consensus 281 ~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~--~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~ 358 (370)
.++.++|+++.....+|.++...|+..-|.. .+..+++.+|.+ ..++++|+.++.. .|+.+++.++.....+.
T Consensus 709 ~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n---~eaW~~LG~v~k~--~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 709 VALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLN---HEAWYYLGEVFKK--LGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHH--ccchHHHHHHHHHHHhh
Confidence 9999999999999999999999998777777 999999999988 8999999999874 45567777776654443
No 121
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.03 E-value=1.5e-09 Score=79.39 Aligned_cols=84 Identities=24% Similarity=0.269 Sum_probs=71.3
Q ss_pred HcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 017532 221 QVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCL 300 (370)
Q Consensus 221 ~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~ 300 (370)
..|+++.|+.+|+++++..+. ++ . ...+..+|.|++..|+|++|+..+++ ...+|.+....+.+|.|+
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~---------~~-~-~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~ 68 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPT---------NP-N-SAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCL 68 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCG---------TH-H-HHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCC---------Ch-h-HHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHH
Confidence 368999999999999976543 22 1 45677799999999999999999999 888888888888999999
Q ss_pred HHhCCHHHHHHHHHHH
Q 017532 301 MYLRDLSDSIKVLENA 316 (370)
Q Consensus 301 ~~~g~~~~A~~~l~~a 316 (370)
..+|++++|++.|+++
T Consensus 69 ~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 69 LKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHTT-HHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHhcC
Confidence 9999999999999875
No 122
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.03 E-value=2.6e-07 Score=88.49 Aligned_cols=262 Identities=14% Similarity=0.075 Sum_probs=151.6
Q ss_pred HHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCC
Q 017532 35 LQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRT 114 (370)
Q Consensus 35 l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 114 (370)
.+..-..|+..+|......+++ .+|++...|+. .+-.......++.|...+.+.....+..
T Consensus 591 ake~w~agdv~~ar~il~~af~----~~pnseeiwla-avKle~en~e~eraR~llakar~~sgTe-------------- 651 (913)
T KOG0495|consen 591 AKEKWKAGDVPAARVILDQAFE----ANPNSEEIWLA-AVKLEFENDELERARDLLAKARSISGTE-------------- 651 (913)
T ss_pred HHHHHhcCCcHHHHHHHHHHHH----hCCCcHHHHHH-HHHHhhccccHHHHHHHHHHHhccCCcc--------------
Confidence 3444556888888877777644 35775444433 3556777788888888887774322111
Q ss_pred CcccchhHHHHH--HHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHH
Q 017532 115 GSMVPFSLRWLY--AVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNV 192 (370)
Q Consensus 115 ~~~~~~~~r~l~--a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 192 (370)
|+.. +.+...+|+.++|+..+++.++.++.. .++| ..+|.++-++++.+.
T Consensus 652 --------Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f------------~Kl~--------lmlGQi~e~~~~ie~ 703 (913)
T KOG0495|consen 652 --------RVWMKSANLERYLDNVEEALRLLEEALKSFPDF------------HKLW--------LMLGQIEEQMENIEM 703 (913)
T ss_pred --------hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCch------------HHHH--------HHHhHHHHHHHHHHH
Confidence 1111 111244566666666665554443322 2222 345556666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCH
Q 017532 193 CFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDY 272 (370)
Q Consensus 193 A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~ 272 (370)
|...|..-++.-| ....+|..|+.+-...|.+-+|...++++. ..+|.. ...|+..-..-++.|..
T Consensus 704 aR~aY~~G~k~cP-~~ipLWllLakleEk~~~~~rAR~ildrar------------lkNPk~-~~lwle~Ir~ElR~gn~ 769 (913)
T KOG0495|consen 704 AREAYLQGTKKCP-NSIPLWLLLAKLEEKDGQLVRARSILDRAR------------LKNPKN-ALLWLESIRMELRAGNK 769 (913)
T ss_pred HHHHHHhccccCC-CCchHHHHHHHHHHHhcchhhHHHHHHHHH------------hcCCCc-chhHHHHHHHHHHcCCH
Confidence 6666666666655 555566666666666666666666666655 222322 33444444444455555
Q ss_pred HHHHHHHHHHHhhCC------------------------------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 273 VSAVREYEECIERDY------------------------------NDIVAINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 273 ~eA~~~~~~~l~~~p------------------------------~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
+.|.....+++...| .|+.++...|..+....++++|.+-|++++..+|+
T Consensus 770 ~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d 849 (913)
T KOG0495|consen 770 EQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD 849 (913)
T ss_pred HHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 555555555555544 35666677888888899999999999999999998
Q ss_pred cchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCCC
Q 017532 323 VALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDD 362 (370)
Q Consensus 323 ~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d~ 362 (370)
+ ..++.++-.. ++... ..+...+++..+..-.|..
T Consensus 850 ~---GD~wa~fykf-el~hG-~eed~kev~~~c~~~EP~h 884 (913)
T KOG0495|consen 850 N---GDAWAWFYKF-ELRHG-TEEDQKEVLKKCETAEPTH 884 (913)
T ss_pred c---chHHHHHHHH-HHHhC-CHHHHHHHHHHHhccCCCC
Confidence 7 4344333333 33333 3455666666665544443
No 123
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.01 E-value=2e-08 Score=101.92 Aligned_cols=141 Identities=16% Similarity=0.090 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCcc-------CC
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFE-------DG 247 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~-------~~ 247 (370)
.++..|+..+...+++++|+.+++..++..| .....++.+|.++.+.+++.+|.-. .++.+.+....- ..
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~P-~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~ 108 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKEHK-KSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDK 108 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-cceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHH
Confidence 4455788888899999999999999999999 9999999999999999999888777 666554442100 00
Q ss_pred ccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 017532 248 LLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERV 320 (370)
Q Consensus 248 ~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~ 320 (370)
-...++. ..+++.+|.||-++|++++|...|+++++.+|+|+.+++|+|..|... ++++|++++.+|+...
T Consensus 109 i~~~~~~-k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~ 179 (906)
T PRK14720 109 ILLYGEN-KLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF 179 (906)
T ss_pred HHhhhhh-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 0011222 367889999999999999999999999999999999999999999999 9999999999998863
No 124
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.01 E-value=2e-08 Score=84.16 Aligned_cols=102 Identities=17% Similarity=0.182 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccc
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGL---DPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLS 250 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~ 250 (370)
+..++.+|..+...|++++|+.+|++++...+ + ....+..+|.++...|++++|+.+|++++++.+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--------- 104 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEE-DPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK--------- 104 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---------
Confidence 46778999999999999999999999998776 3 2468899999999999999999999999975433
Q ss_pred hHHHHHHHHHhHHHHHHHcCC--------------HHHHHHHHHHHHhhCCCC
Q 017532 251 EVEFRNLVSRNKALIYLVGKD--------------YVSAVREYEECIERDYND 289 (370)
Q Consensus 251 ~p~~~~~~~~~~g~~~~~~g~--------------~~eA~~~~~~~l~~~p~~ 289 (370)
. ...+..+|.++...|+ +.+|++++++++..+|++
T Consensus 105 ---~-~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 105 ---Q-PSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred ---c-HHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 2 4556778999988887 677888888888888876
No 125
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.98 E-value=1.2e-08 Score=98.58 Aligned_cols=206 Identities=15% Similarity=0.020 Sum_probs=132.4
Q ss_pred chhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 017532 119 PFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMN 198 (370)
Q Consensus 119 ~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 198 (370)
-|..+.+.+++....|-...|+..++.+-..++-++--...+....+.++-.+.+ . .-.....|+..||+..=-.+|+
T Consensus 397 ~Wq~q~~laell~slGitksAl~I~Erlemw~~vi~CY~~lg~~~kaeei~~q~l-e-k~~d~~lyc~LGDv~~d~s~yE 474 (777)
T KOG1128|consen 397 IWQLQRLLAELLLSLGITKSALVIFERLEMWDPVILCYLLLGQHGKAEEINRQEL-E-KDPDPRLYCLLGDVLHDPSLYE 474 (777)
T ss_pred cchHHHHHHHHHHHcchHHHHHHHHHhHHHHHHHHHHHHHhcccchHHHHHHHHh-c-CCCcchhHHHhhhhccChHHHH
Confidence 3456667777778888888888877776544443321111110001111111111 0 0011112333344333344444
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHH
Q 017532 199 ESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVRE 278 (370)
Q Consensus 199 ~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~ 278 (370)
++.+.....+..+...+|......++++++.++++..+++ +|-. ...|+..|.+..+.++++.|.++
T Consensus 475 kawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~------------nplq-~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 475 KAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEI------------NPLQ-LGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred HHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhc------------Cccc-hhHHHhccHHHHHHhhhHHHHHH
Confidence 4444333233345555666666678999999999998854 3333 66789999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccC
Q 017532 279 YEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYV 342 (370)
Q Consensus 279 ~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~ 342 (370)
|...+.++|++..+|+|++.+|.+.|+-.+|...+.+|++.+-++ ..++-|..++-+-.++
T Consensus 542 F~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~---w~iWENymlvsvdvge 602 (777)
T KOG1128|consen 542 FHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH---WQIWENYMLVSVDVGE 602 (777)
T ss_pred HHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC---Ceeeechhhhhhhccc
Confidence 999999999999999999999999999999999999999988554 5666677776654443
No 126
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.98 E-value=1.9e-09 Score=75.63 Aligned_cols=67 Identities=27% Similarity=0.321 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcC-CHHHHHHHHHHHHhhC
Q 017532 208 DPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGK-DYVSAVREYEECIERD 286 (370)
Q Consensus 208 ~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g-~~~eA~~~~~~~l~~~ 286 (370)
++..+..+|.++++.|++++|+.+|++++++.+ +. ..++.++|.++..+| ++++|++.|+++++++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p------------~~-~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDP------------NN-AEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHST------------TH-HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------------CC-HHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 567899999999999999999999999997643 33 678999999999999 7999999999999999
Q ss_pred C
Q 017532 287 Y 287 (370)
Q Consensus 287 p 287 (370)
|
T Consensus 69 P 69 (69)
T PF13414_consen 69 P 69 (69)
T ss_dssp T
T ss_pred c
Confidence 8
No 127
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.96 E-value=2.7e-08 Score=82.98 Aligned_cols=110 Identities=12% Similarity=0.030 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccc
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGL---DPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLS 250 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~ 250 (370)
+..++.+|.++..+|++++|+..|++++...+ + .+.++.++|.++...|++++|+..|++++++.+.. ..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~-~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~------~~ 107 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI-DPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFL------PQ 107 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc-cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc------HH
Confidence 35667889999999999999999999998876 4 34588999999999999999999999999764432 00
Q ss_pred hHHHHHHHHHhHHHHHHHcCCHH-------HHHHHHHHHHhhCCCCH
Q 017532 251 EVEFRNLVSRNKALIYLVGKDYV-------SAVREYEECIERDYNDI 290 (370)
Q Consensus 251 ~p~~~~~~~~~~g~~~~~~g~~~-------eA~~~~~~~l~~~p~~~ 290 (370)
.....+.++.++|..+...|+++ +|+.+|++++..+|.+.
T Consensus 108 ~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 108 ALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 11111334444444444888877 55566666777777644
No 128
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.95 E-value=3e-08 Score=94.63 Aligned_cols=161 Identities=11% Similarity=0.087 Sum_probs=129.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHH
Q 017532 178 NCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNL 257 (370)
Q Consensus 178 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~ 257 (370)
+..+.-.++.++|...+...+.+++..| .+.+++...|..+..+|+-++|..+...+++.+..+ ..
T Consensus 11 F~~~lk~yE~kQYkkgLK~~~~iL~k~~-eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S-------------~v 76 (700)
T KOG1156|consen 11 FRRALKCYETKQYKKGLKLIKQILKKFP-EHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKS-------------HV 76 (700)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhCC-ccchhHHhccchhhcccchHHHHHHHHHHhccCccc-------------ch
Confidence 3444455667899999999999999888 899999999999999999999999998888643322 34
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Q 017532 258 VSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMY 337 (370)
Q Consensus 258 ~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~ly 337 (370)
.|..+|.++....+|++|+++|+.++..+|+|...+.-++.....+++++.....-.+.++..|+. ...++-++..+
T Consensus 77 CwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~---ra~w~~~Avs~ 153 (700)
T KOG1156|consen 77 CWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQ---RASWIGFAVAQ 153 (700)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh---HHHHHHHHHHH
Confidence 577789999999999999999999999999999999999999999999999999999999999886 66666666666
Q ss_pred HhccCCchhhHHHHHHHHhh
Q 017532 338 ELAYVNHSDIKRTLSSWIGR 357 (370)
Q Consensus 338 el~~~~~~~~~~~ll~~~~~ 357 (370)
-+..+ .......++.+..
T Consensus 154 ~L~g~--y~~A~~il~ef~~ 171 (700)
T KOG1156|consen 154 HLLGE--YKMALEILEEFEK 171 (700)
T ss_pred HHHHH--HHHHHHHHHHHHH
Confidence 66544 5566666665544
No 129
>PRK15331 chaperone protein SicA; Provisional
Probab=98.94 E-value=1.3e-08 Score=82.27 Aligned_cols=108 Identities=14% Similarity=0.031 Sum_probs=91.4
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHH
Q 017532 200 SIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREY 279 (370)
Q Consensus 200 ~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~ 279 (370)
+..+.+ +.-...+..|.-+.+.|++++|...|.-.....+ .++ .-++.+|.|+..+|+|++|+..|
T Consensus 29 l~gis~-~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~---------~n~----~Y~~GLaa~~Q~~k~y~~Ai~~Y 94 (165)
T PRK15331 29 VHGIPQ-DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDF---------YNP----DYTMGLAAVCQLKKQFQKACDLY 94 (165)
T ss_pred HhCCCH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc---------CcH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444 4556678889999999999999999988774322 233 44789999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 280 EECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 280 ~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
..+..++++|+...+..|.|++.+|+.++|+..|+.++. .|.
T Consensus 95 ~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~ 136 (165)
T PRK15331 95 AVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTE 136 (165)
T ss_pred HHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-Ccc
Confidence 999999999999999999999999999999999999998 454
No 130
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.94 E-value=3.8e-09 Score=77.32 Aligned_cols=82 Identities=13% Similarity=0.118 Sum_probs=66.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHH
Q 017532 187 SKEYNVCFDLMNESIGRGNGL-DPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALI 265 (370)
Q Consensus 187 ~g~~~~A~~~~~~~l~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~ 265 (370)
.|+|+.|+.+++++++..|.+ +...++.+|.++++.|++++|+..+++ ... ++.. ......+|.|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~------------~~~~-~~~~~l~a~~ 67 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL------------DPSN-PDIHYLLARC 67 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH------------HHCH-HHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC------------CCCC-HHHHHHHHHH
Confidence 589999999999999999922 456677899999999999999999999 422 2322 3455667999
Q ss_pred HHHcCCHHHHHHHHHHH
Q 017532 266 YLVGKDYVSAVREYEEC 282 (370)
Q Consensus 266 ~~~~g~~~eA~~~~~~~ 282 (370)
++.+|++++|++.|+++
T Consensus 68 ~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 68 LLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHTT-HHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHhcC
Confidence 99999999999999875
No 131
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.93 E-value=5e-09 Score=72.56 Aligned_cols=65 Identities=20% Similarity=0.160 Sum_probs=57.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 017532 213 SKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI 290 (370)
Q Consensus 213 ~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~ 290 (370)
+.+|..+++.|++++|+..|+++++ .+|+. ..++..+|.++..+|++++|+..|+++++.+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~------------~~P~~-~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALK------------QDPDN-PEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHC------------CSTTH-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHH------------HCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 3579999999999999999999993 44555 78899999999999999999999999999999875
No 132
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=2.7e-06 Score=80.78 Aligned_cols=185 Identities=12% Similarity=0.128 Sum_probs=123.0
Q ss_pred CCCCcCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchH-H-HHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCC
Q 017532 24 SLNDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHH-H-LTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGY 101 (370)
Q Consensus 24 ~~~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~-~-~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~ 101 (370)
.|+|.+-....+..+|+.++|+.|+++.+.- +.. . ..+..=++.|+.++++.++|+..++.+..++
T Consensus 42 ~pdd~~a~~cKvValIq~~ky~~ALk~ikk~--------~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~~~~---- 109 (652)
T KOG2376|consen 42 VPDDEDAIRCKVVALIQLDKYEDALKLIKKN--------GALLVINSFFFEKAYCEYRLNKLDEALKTLKGLDRLD---- 109 (652)
T ss_pred CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhc--------chhhhcchhhHHHHHHHHHcccHHHHHHHHhcccccc----
Confidence 3566666666889999999999999766552 221 0 1111337899999999999999998553322
Q ss_pred cccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHH----hhHhhHHhHHHHHHHH----
Q 017532 102 QYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARK----LAEKLEESVKSWKKRE---- 173 (370)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~----~~~~~~~~~~~~~~~~---- 173 (370)
+ .+..+.+.+.+++|+++++++.|..+.+......... -..........|.++.
T Consensus 110 -----------------~-~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~ 171 (652)
T KOG2376|consen 110 -----------------D-KLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVP 171 (652)
T ss_pred -----------------h-HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCC
Confidence 1 1233567777999999999999998865432222111 0000000011133333
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-------CCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017532 174 ---IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGN-------GLD-------PILVSKLGFIQMQVGDLEGAKKSFNRVE 236 (370)
Q Consensus 174 ---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-------~~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~a~ 236 (370)
-..+|+.+-++...|+|.+|++.+++++++.. ..+ ..+...++.++..+|+.++|.+.|...+
T Consensus 172 e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 172 EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 35678999999999999999999999943321 011 1344678999999999999999998855
Q ss_pred HH
Q 017532 237 EM 238 (370)
Q Consensus 237 ~l 238 (370)
+.
T Consensus 252 ~~ 253 (652)
T KOG2376|consen 252 KR 253 (652)
T ss_pred Hh
Confidence 43
No 133
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.93 E-value=9.1e-07 Score=75.79 Aligned_cols=141 Identities=15% Similarity=0.113 Sum_probs=118.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHH
Q 017532 179 CLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLV 258 (370)
Q Consensus 179 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~ 258 (370)
.+.-..+..|+.+.|..+++++....| .+......-|..+...|.+++|+++|+..++ .+|.. ..+
T Consensus 57 qV~IAAld~~~~~lAq~C~~~L~~~fp-~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~------------ddpt~-~v~ 122 (289)
T KOG3060|consen 57 QVFIAALDTGRDDLAQKCINQLRDRFP-GSKRVGKLKAMLLEATGNYKEAIEYYESLLE------------DDPTD-TVI 122 (289)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHhhchhhHHHHHHHHhc------------cCcch-hHH
Confidence 344455567999999999999988889 8888888889999999999999999999993 34554 444
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 017532 259 SRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSM 336 (370)
Q Consensus 259 ~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~l 336 (370)
+.-.--+.-.+|+.-+|++.+...++..++|..+|.-++..|...|+|.+|.=++++++-..|.+ +-..-.++.+
T Consensus 123 ~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n---~l~f~rlae~ 197 (289)
T KOG3060|consen 123 RKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFN---PLYFQRLAEV 197 (289)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCc---HHHHHHHHHH
Confidence 54555666789999999999999999999999999999999999999999999999999999976 4444444433
No 134
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.92 E-value=3.4e-06 Score=76.71 Aligned_cols=252 Identities=12% Similarity=0.087 Sum_probs=157.4
Q ss_pred HHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCccc
Q 017532 39 ATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMV 118 (370)
Q Consensus 39 ~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 118 (370)
.-.|+|..|-++..+....+ +. +...+...+-+=-+.|+++.|-..+.++.++.. +.. .
T Consensus 95 l~eG~~~qAEkl~~rnae~~----e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~-------------~~~---l 153 (400)
T COG3071 95 LFEGDFQQAEKLLRRNAEHG----EQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAG-------------DDT---L 153 (400)
T ss_pred HhcCcHHHHHHHHHHhhhcC----cc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCC-------------Cch---H
Confidence 45799999999999865544 22 244555556667788999999999988876632 111 1
Q ss_pred chhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHH-------HH-hhHhh-----------------HHhHHHHHHHH
Q 017532 119 PFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLA-------RK-LAEKL-----------------EESVKSWKKRE 173 (370)
Q Consensus 119 ~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~-------~~-~~~~~-----------------~~~~~~~~~~~ 173 (370)
.-.+..+++....|+.+.|...+.+++...+.... .+ ..+.. ++.....+
T Consensus 154 --~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le--- 228 (400)
T COG3071 154 --AVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLE--- 228 (400)
T ss_pred --HHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHH---
Confidence 11344567778889999999888887654322210 00 00000 00000000
Q ss_pred HHHHHHHHHHHHhcCCHHHHHH---HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccc
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFD---LMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLS 250 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~---~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~ 250 (370)
..++.. ++.+.++-..+.. ..+..-..- ..++.+....+.-+.+.|+.++|.+..+++++- .-
T Consensus 229 ~~a~~g---lL~q~~~~~~~~gL~~~W~~~pr~l-r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~----------~~ 294 (400)
T COG3071 229 QQAWEG---LLQQARDDNGSEGLKTWWKNQPRKL-RNDPELVVAYAERLIRLGDHDEAQEIIEDALKR----------QW 294 (400)
T ss_pred HHHHHH---HHHHHhccccchHHHHHHHhccHHh-hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh----------cc
Confidence 111111 1122222222222 222221111 255667777788888899999999999999852 22
Q ss_pred hHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHH
Q 017532 251 EVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLV 330 (370)
Q Consensus 251 ~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~ 330 (370)
+|.. ....+.+ .-+++..=++..++.+..+|+++..+..+|..+++.+.+.+|.++|+.+++..|+. .-.
T Consensus 295 D~~L----~~~~~~l--~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~----~~~ 364 (400)
T COG3071 295 DPRL----CRLIPRL--RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSA----SDY 364 (400)
T ss_pred ChhH----HHHHhhc--CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh----hhH
Confidence 4432 2223444 67888888888899999999999999999999999999999999999999999874 445
Q ss_pred HHHHHHHHhc
Q 017532 331 VNLCSMYELA 340 (370)
Q Consensus 331 ~nl~~lyel~ 340 (370)
.-++.+++-.
T Consensus 365 ~~la~~~~~~ 374 (400)
T COG3071 365 AELADALDQL 374 (400)
T ss_pred HHHHHHHHHc
Confidence 5666666643
No 135
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.92 E-value=3e-08 Score=88.23 Aligned_cols=94 Identities=13% Similarity=0.039 Sum_probs=49.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhH
Q 017532 186 SSKEYNVCFDLMNESIGRGNGLD---PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNK 262 (370)
Q Consensus 186 ~~g~~~~A~~~~~~~l~~~~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~ 262 (370)
..|+|++|+..|+..++.+| ++ +.+++.+|.+|+..|++++|+..|++++...+++ |.. .+++..+
T Consensus 155 ~~~~y~~Ai~af~~fl~~yP-~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s---------~~~-~dAl~kl 223 (263)
T PRK10803 155 DKSRQDDAIVAFQNFVKKYP-DSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKS---------PKA-ADAMFKV 223 (263)
T ss_pred hcCCHHHHHHHHHHHHHHCc-CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---------cch-hHHHHHH
Confidence 34555555555555555555 33 3455555555555555555555555555443332 111 3344455
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 017532 263 ALIYLVGKDYVSAVREYEECIERDYNDI 290 (370)
Q Consensus 263 g~~~~~~g~~~eA~~~~~~~l~~~p~~~ 290 (370)
|.++...|++++|+..|+++++..|+..
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 5555555555555555555555555544
No 136
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.92 E-value=4.2e-08 Score=76.25 Aligned_cols=99 Identities=21% Similarity=0.095 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC-
Q 017532 210 ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYN- 288 (370)
Q Consensus 210 ~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~- 288 (370)
.+++.+|.++-..|+.++|+.+|++++... ...+ ....+++.+|.++...|++++|+..+++.+...|+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~g---------L~~~-~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~ 71 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAG---------LSGA-DRRRALIQLASTLRNLGRYDEALALLEEALEEFPDD 71 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------CCch-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc
Confidence 467889999999999999999999999631 1223 33678899999999999999999999999999888
Q ss_pred --CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 017532 289 --DIVAINNKALCLMYLRDLSDSIKVLENALE 318 (370)
Q Consensus 289 --~~~~~~nla~~~~~~g~~~~A~~~l~~al~ 318 (370)
+..+...++.++...|+.++|++.+-.++.
T Consensus 72 ~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 72 ELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 778888899999999999999999988775
No 137
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=2.1e-06 Score=74.15 Aligned_cols=263 Identities=15% Similarity=0.151 Sum_probs=132.9
Q ss_pred hHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCC
Q 017532 32 LASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYP 111 (370)
Q Consensus 32 ~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~ 111 (370)
.=-++..+=.|+|...|+-..+... .+.+ .....+...+++.+|.+..-..+.+.-. ..
T Consensus 12 LF~iRn~fY~Gnyq~~ine~~~~~~-----~~~~-~e~d~y~~raylAlg~~~~~~~eI~~~~-~~-------------- 70 (299)
T KOG3081|consen 12 LFNIRNYFYLGNYQQCINEAEKFSS-----SKTD-VELDVYMYRAYLALGQYQIVISEIKEGK-AT-------------- 70 (299)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhhcc-----ccch-hHHHHHHHHHHHHccccccccccccccc-CC--------------
Confidence 3367888889999999987666421 1221 3333445678888888887776654442 00
Q ss_pred CCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHH
Q 017532 112 NRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYN 191 (370)
Q Consensus 112 ~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 191 (370)
.--..|.+. ......++.+.-+..+.+.+..... .... .++..-+.+++..|+++
T Consensus 71 ------~lqAvr~~a-~~~~~e~~~~~~~~~l~E~~a~~~~-----------~sn~-------i~~l~aa~i~~~~~~~d 125 (299)
T KOG3081|consen 71 ------PLQAVRLLA-EYLELESNKKSILASLYELVADSTD-----------GSNL-------IDLLLAAIIYMHDGDFD 125 (299)
T ss_pred ------hHHHHHHHH-HHhhCcchhHHHHHHHHHHHHhhcc-----------chhH-------HHHHHhhHHhhcCCChH
Confidence 000123222 2112223333333333332211000 0000 11123344566666777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCC
Q 017532 192 VCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKD 271 (370)
Q Consensus 192 ~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~ 271 (370)
+|+...+.. ..-.+...--.++.++.+++-|++.++++.++..+. .-... +.+|+.++. ..++
T Consensus 126 eAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~-------tLtQL-A~awv~la~---ggek 188 (299)
T KOG3081|consen 126 EALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDA-------TLTQL-AQAWVKLAT---GGEK 188 (299)
T ss_pred HHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH-------HHHHH-HHHHHHHhc---cchh
Confidence 776666552 223333333456666666666666666666432210 00001 223322221 2345
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHH
Q 017532 272 YVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTL 351 (370)
Q Consensus 272 ~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~l 351 (370)
+.+|.-+|+..-+..|.++...+-+|+|.+.+|++++|...++.++..++++ ...+.|+-++-.+. +++.+.-...
T Consensus 189 ~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d---petL~Nliv~a~~~-Gkd~~~~~r~ 264 (299)
T KOG3081|consen 189 IQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD---PETLANLIVLALHL-GKDAEVTERN 264 (299)
T ss_pred hhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC---HHHHHHHHHHHHHh-CCChHHHHHH
Confidence 6666666666666666666666666666666677777777776666666666 66666665554432 2232333344
Q ss_pred HHHHhhhCCC
Q 017532 352 SSWIGRVAPD 361 (370)
Q Consensus 352 l~~~~~~~~d 361 (370)
+.++....|+
T Consensus 265 l~QLk~~~p~ 274 (299)
T KOG3081|consen 265 LSQLKLSHPE 274 (299)
T ss_pred HHHHHhcCCc
Confidence 4444444333
No 138
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=5.3e-08 Score=88.81 Aligned_cols=133 Identities=10% Similarity=0.073 Sum_probs=110.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcC
Q 017532 177 LNCLIGYHLSSKEYNVCFDLMNESIGRGN---GL-----------DPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEG 242 (370)
Q Consensus 177 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~---~~-----------~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~ 242 (370)
....|+.|++.|+|..|...|++++..-. .. -...+.+++.++++++++.+|+.+.++++.+.++
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~- 289 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN- 289 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-
Confidence 34678899999999999999999876433 01 1245689999999999999999999999975444
Q ss_pred CccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHhCC
Q 017532 243 KFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDS-IKVLENALERVP 321 (370)
Q Consensus 243 ~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A-~~~l~~al~~~p 321 (370)
+ ..+++-+|.++...|+|+.|+..|+++++++|+|-.+..-+..|..+..++.+. .+.|.+++..-+
T Consensus 290 -----------N-~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 290 -----------N-VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred -----------c-hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3 677888999999999999999999999999999999999999888876665554 888888887755
Q ss_pred C
Q 017532 322 T 322 (370)
Q Consensus 322 ~ 322 (370)
.
T Consensus 358 ~ 358 (397)
T KOG0543|consen 358 E 358 (397)
T ss_pred c
Confidence 3
No 139
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.88 E-value=9.3e-08 Score=85.12 Aligned_cols=106 Identities=8% Similarity=0.004 Sum_probs=90.3
Q ss_pred CHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017532 208 DPILVSKLGFIQ-MQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD 286 (370)
Q Consensus 208 ~~~~~~~lg~~~-~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~ 286 (370)
+....+..|..+ +..|++++|+..|++.++..|++ ... ..+++.+|.+|+..|++++|+..|++++...
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s------~~a----~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y 210 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDS------TYQ----PNANYWLGQLNYNKGKKDDAAYYFASVVKNY 210 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC------cch----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 346667777765 66799999999999999876653 112 3456789999999999999999999999888
Q ss_pred CC---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 287 YN---DIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 287 p~---~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
|+ .+.+++.+|.++...|++++|++.|+++++..|+.
T Consensus 211 P~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 211 PKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred CCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 77 46889999999999999999999999999999986
No 140
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.86 E-value=2.2e-07 Score=81.23 Aligned_cols=276 Identities=17% Similarity=0.117 Sum_probs=181.2
Q ss_pred HhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCC
Q 017532 33 ASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPN 112 (370)
Q Consensus 33 ~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~ 112 (370)
..+..||+-.+|..||+..... ...+|.+ ...+...+.|+..+..|.+|...+.+++.+.+-
T Consensus 15 aviy~lI~d~ry~DaI~~l~s~----~Er~p~~-rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~------------- 76 (459)
T KOG4340|consen 15 AVVYRLIRDARYADAIQLLGSE----LERSPRS-RAGLSLLGYCYYRLQEFALAAECYEQLGQLHPE------------- 76 (459)
T ss_pred HHHHHHHHHhhHHHHHHHHHHH----HhcCccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChH-------------
Confidence 3578899999999999877663 3345743 555666789999999999999999999755431
Q ss_pred CCCcccchhHHHHHHHcCcccCCccchHHHHHHHHH------HHHHHHH--HHhhHhhHHhHHHHHH----HHHHHHHHH
Q 017532 113 RTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLD------FVREKLA--RKLAEKLEESVKSWKK----REIFVLNCL 180 (370)
Q Consensus 113 ~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~------~~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~l 180 (370)
--..|+..+...+..+.+..|+..+..+.. .|-+... .+..+....+..+..+ ..+.+..+.
T Consensus 77 ------~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~ 150 (459)
T KOG4340|consen 77 ------LEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINL 150 (459)
T ss_pred ------HHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccc
Confidence 113455666665667777777766655432 2221111 0111111111111111 125677888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-hcCCc----------cCCcc
Q 017532 181 IGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEML-NEGKF----------EDGLL 249 (370)
Q Consensus 181 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~-~~~~~----------~~~~~ 249 (370)
|-++++.|+|+.|..-|+.+++.+. ..+-+-++++.++++.|+++.|.++..+.++-. ++.+. |..+-
T Consensus 151 gCllykegqyEaAvqkFqaAlqvsG-yqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsv 229 (459)
T KOG4340|consen 151 GCLLYKEGQYEAAVQKFQAALQVSG-YQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSV 229 (459)
T ss_pred hheeeccccHHHHHHHHHHHHhhcC-CCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcc
Confidence 8899999999999999999999988 788888999999999999999999998876532 11111 11111
Q ss_pred chHH-----HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 250 SEVE-----FRNLVSRNKALIYLVGKDYVSAVREYEECIER--DYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 250 ~~p~-----~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~--~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
.+|. -..++...++-+++..|+++.|.+.+..+--. ..-||.++.|+|..-. .+++.+..+-+.=.+.++|-
T Consensus 230 gNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPf 308 (459)
T KOG4340|consen 230 GNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPF 308 (459)
T ss_pred cchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCC
Confidence 1111 12566777889999999999998776544211 1136677788776443 45666667777777777775
Q ss_pred cchhHHHHHHHHHHH
Q 017532 323 VALNETLVVNLCSMY 337 (370)
Q Consensus 323 ~~~~~~~~~nl~~ly 337 (370)
+ .....|+-.+|
T Consensus 309 P---~ETFANlLlly 320 (459)
T KOG4340|consen 309 P---PETFANLLLLY 320 (459)
T ss_pred C---hHHHHHHHHHH
Confidence 5 55555655555
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.84 E-value=2.5e-07 Score=75.21 Aligned_cols=94 Identities=18% Similarity=0.294 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccch
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLD---PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSE 251 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~ 251 (370)
.+.+.+|.+++..|++++|+..|+.++...+ +. ..+...+|.+++..|++++|+..++... +
T Consensus 49 ~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~-d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~--------------~ 113 (145)
T PF09976_consen 49 LAALQLAKAAYEQGDYDEAKAALEKALANAP-DPELKPLARLRLARILLQQGQYDEALATLQQIP--------------D 113 (145)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc--------------C
Confidence 5567899999999999999999999999876 43 3567889999999999999999997643 1
Q ss_pred HHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHH
Q 017532 252 VEFRNLVSRNKALIYLVGKDYVSAVREYEECI 283 (370)
Q Consensus 252 p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l 283 (370)
+.+...++..+|.++...|++++|+..|++++
T Consensus 114 ~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 114 EAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred cchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 11224567779999999999999999999874
No 142
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.83 E-value=9.8e-07 Score=84.57 Aligned_cols=242 Identities=16% Similarity=0.134 Sum_probs=164.7
Q ss_pred hHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCC
Q 017532 32 LASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYP 111 (370)
Q Consensus 32 ~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~ 111 (370)
++.+......++|.+.+++++.+.. ..|. +...+.+++..|+.+|+-++|....+.....|
T Consensus 11 F~~~lk~yE~kQYkkgLK~~~~iL~----k~~e-HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-------------- 71 (700)
T KOG1156|consen 11 FRRALKCYETKQYKKGLKLIKQILK----KFPE-HGESLAMKGLTLNCLGKKEEAYELVRLGLRND-------------- 71 (700)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH----hCCc-cchhHHhccchhhcccchHHHHHHHHHHhccC--------------
Confidence 4456677888999999988877543 4565 34556678899999999999998776654322
Q ss_pred CCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHH
Q 017532 112 NRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYN 191 (370)
Q Consensus 112 ~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 191 (370)
.+|.|.| .++ +-++....+.++|+.-+..++..-+.. . .++..++..-.++|+|+
T Consensus 72 --~~S~vCw--Hv~-gl~~R~dK~Y~eaiKcy~nAl~~~~dN------------~--------qilrDlslLQ~QmRd~~ 126 (700)
T KOG1156|consen 72 --LKSHVCW--HVL-GLLQRSDKKYDEAIKCYRNALKIEKDN------------L--------QILRDLSLLQIQMRDYE 126 (700)
T ss_pred --cccchhH--HHH-HHHHhhhhhHHHHHHHHHHHHhcCCCc------------H--------HHHHHHHHHHHHHHhhh
Confidence 2344444 222 222244455556665555544322211 1 23345666677789999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCC
Q 017532 192 VCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKD 271 (370)
Q Consensus 192 ~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~ 271 (370)
.....=.+.++..| ..-..|...+..+...|++..|....+...+....+ .+..+-.. .........++.+.|.
T Consensus 127 ~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~----~s~~~~e~-se~~Ly~n~i~~E~g~ 200 (700)
T KOG1156|consen 127 GYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS----PSKEDYEH-SELLLYQNQILIEAGS 200 (700)
T ss_pred hHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC----CCHHHHHH-HHHHHHHHHHHHHccc
Confidence 98888888888888 777888888889999999999988888877654321 11222233 5556667778888888
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 272 YVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 272 ~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
+++|++.+..--..--+.....-..|..++++|++++|+..+...+..+|++
T Consensus 201 ~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn 252 (700)
T KOG1156|consen 201 LQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDN 252 (700)
T ss_pred HHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchh
Confidence 8888877765432222334455567888899999999999999999999975
No 143
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.83 E-value=1.4e-08 Score=70.90 Aligned_cols=58 Identities=22% Similarity=0.291 Sum_probs=54.7
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 266 YLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 266 ~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
++..|++++|++.|++++..+|++..++..+|.++...|++++|.+.+++++..+|++
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 4678999999999999999999999999999999999999999999999999999985
No 144
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.83 E-value=8.9e-07 Score=79.24 Aligned_cols=283 Identities=11% Similarity=0.030 Sum_probs=163.3
Q ss_pred hHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCC
Q 017532 34 SLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNR 113 (370)
Q Consensus 34 ~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~ 113 (370)
.+..++...+|..|+.+++-....+ .... ..+..|+ +.|+.++|.|++|+.++..+..-+.++
T Consensus 28 ~Ledfls~rDytGAislLefk~~~~--~EEE-~~~~lWi-a~C~fhLgdY~~Al~~Y~~~~~~~~~~------------- 90 (557)
T KOG3785|consen 28 ELEDFLSNRDYTGAISLLEFKLNLD--REEE-DSLQLWI-AHCYFHLGDYEEALNVYTFLMNKDDAP------------- 90 (557)
T ss_pred hHHHHHhcccchhHHHHHHHhhccc--hhhh-HHHHHHH-HHHHHhhccHHHHHHHHHHHhccCCCC-------------
Confidence 5899999999999999988765333 1112 1344554 889999999999999998885433211
Q ss_pred CCcccchhHHHHHHHcCcccCCccchHHHHHHHH--HHHHHHHHHH--hhHhhHHhHHHHHHHH---HHHHHHHHHHHHh
Q 017532 114 TGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELL--DFVREKLARK--LAEKLEESVKSWKKRE---IFVLNCLIGYHLS 186 (370)
Q Consensus 114 ~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll--~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~la~~~~~ 186 (370)
-.+.+-.|-+..++|...+|.......- ..|.+.+..- +.... ..+-.+.+.+ .+-...++.+++.
T Consensus 91 ------~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndE-k~~~~fh~~LqD~~EdqLSLAsvhYm 163 (557)
T KOG3785|consen 91 ------AELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDE-KRILTFHSSLQDTLEDQLSLASVHYM 163 (557)
T ss_pred ------cccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcH-HHHHHHHHHHhhhHHHHHhHHHHHHH
Confidence 1112223333355566666554433321 1122221100 00000 0000001111 1233478888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHH
Q 017532 187 SKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIY 266 (370)
Q Consensus 187 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~ 266 (370)
.-.|++||.+|.+++..+| ....+-..++.+|.++.-++-+.+.+.--++..+++ +.+...++...
T Consensus 164 R~HYQeAIdvYkrvL~dn~-ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdS-------------tiA~NLkacn~ 229 (557)
T KOG3785|consen 164 RMHYQEAIDVYKRVLQDNP-EYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDS-------------TIAKNLKACNL 229 (557)
T ss_pred HHHHHHHHHHHHHHHhcCh-hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCc-------------HHHHHHHHHHH
Confidence 8899999999999999888 666666788999999999999999888888665553 22222233333
Q ss_pred HH--cCCHHH----------------HHHHHHH----------HHhhCC----CCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 017532 267 LV--GKDYVS----------------AVREYEE----------CIERDY----NDIVAINNKALCLMYLRDLSDSIKVLE 314 (370)
Q Consensus 267 ~~--~g~~~e----------------A~~~~~~----------~l~~~p----~~~~~~~nla~~~~~~g~~~~A~~~l~ 314 (370)
++ .|+..+ +...++. ++..-| .-|.+..|+++-|++.++.++|+..+.
T Consensus 230 fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K 309 (557)
T KOG3785|consen 230 FRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK 309 (557)
T ss_pred hhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh
Confidence 32 232222 2222221 111112 235778899999999999999999887
Q ss_pred HHHHhCCCcc--hhHHHHHHHHHHHHhccCCchhhHHHHHHHHhh
Q 017532 315 NALERVPTVA--LNETLVVNLCSMYELAYVNHSDIKRTLSSWIGR 357 (370)
Q Consensus 315 ~al~~~p~~~--~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~ 357 (370)
.. +|... ..-..+.+++.--|..+...-+.+...++.|+.
T Consensus 310 dl---~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~ 351 (557)
T KOG3785|consen 310 DL---DPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGE 351 (557)
T ss_pred hc---CCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcc
Confidence 64 55421 112233444444454444344455555555543
No 145
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.82 E-value=2.9e-08 Score=70.39 Aligned_cols=61 Identities=33% Similarity=0.432 Sum_probs=58.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 263 ALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 263 g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
..+++..+++++|++++++++..+|+++..+..+|.++..+|++++|++.|+++++..|+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 4678999999999999999999999999999999999999999999999999999999986
No 146
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.80 E-value=1.6e-06 Score=75.07 Aligned_cols=175 Identities=16% Similarity=0.123 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccch
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLD---PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSE 251 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~ 251 (370)
..+++-|...++.|+|++|+..|+.+...+| .. ..+...++..+.+.|+++.|+.+.++-+++.|. +
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p-~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~---------~ 104 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSRHP-FSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPT---------H 104 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC---------C
Confidence 4456777788899999999999999999988 43 578899999999999999999999999988766 3
Q ss_pred HHHHHHHHHhHHHHHHHc--------CCHHHHHHHHHHHHhhCCCCHH---------------HH--HHHHHHHHHhCCH
Q 017532 252 VEFRNLVSRNKALIYLVG--------KDYVSAVREYEECIERDYNDIV---------------AI--NNKALCLMYLRDL 306 (370)
Q Consensus 252 p~~~~~~~~~~g~~~~~~--------g~~~eA~~~~~~~l~~~p~~~~---------------~~--~nla~~~~~~g~~ 306 (370)
|+. ..+...+|.+++.. .-..+|+..|+..+...|+..- +. ...|.-|.+.|.+
T Consensus 105 ~n~-dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~ 183 (254)
T COG4105 105 PNA-DYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAY 183 (254)
T ss_pred CCh-hHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 444 77888899998763 3345788889999999998541 11 2456778889999
Q ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCCC
Q 017532 307 SDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDD 362 (370)
Q Consensus 307 ~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d~ 362 (370)
-.|+..++.+++..|+.......+.-+...|+-..- +..+.+....++...|++
T Consensus 184 ~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl--~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 184 VAAINRFEEVLENYPDTSAVREALARLEEAYYALGL--TDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCC--hHHHHHHHHHHHhcCCCC
Confidence 999999999999998876667888888888885444 566666666777777776
No 147
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.80 E-value=3.2e-07 Score=85.35 Aligned_cols=120 Identities=14% Similarity=0.020 Sum_probs=107.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017532 207 LDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD 286 (370)
Q Consensus 207 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~ 286 (370)
....+++..+..++..|++++|.+.++..+...|+ + .+.+...|.++++.|+.++|.+.+++++..+
T Consensus 304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~---------N----~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~ 370 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPD---------N----PYYLELAGDILLEANKAKEAIERLKKALALD 370 (484)
T ss_pred cchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCC---------C----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence 66788999999999999999999999998854433 2 4556678999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccC
Q 017532 287 YNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYV 342 (370)
Q Consensus 287 p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~ 342 (370)
|+.+....|+|.++++.|++++|+..+...+..+|++ ...+..|+..|+...+
T Consensus 371 P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d---p~~w~~LAqay~~~g~ 423 (484)
T COG4783 371 PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED---PNGWDLLAQAYAELGN 423 (484)
T ss_pred CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC---chHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999999998 7788888888886544
No 148
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.80 E-value=1.4e-06 Score=91.91 Aligned_cols=262 Identities=13% Similarity=0.029 Sum_probs=169.5
Q ss_pred HHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCc
Q 017532 37 DLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGS 116 (370)
Q Consensus 37 ~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 116 (370)
.....|++.+|...++++.......++..........+.++...|++++|...+.+........ . ...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~----------g--~~~ 528 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQH----------D--VYH 528 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh----------c--chH
Confidence 3457999999999998876431111111111223334566788999999999988875331100 0 000
Q ss_pred ccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 017532 117 MVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDL 196 (370)
Q Consensus 117 ~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 196 (370)
...+. ....+.+....|+..+|...+.+.+..+...-.. . . +. ...++..++.++...|++++|...
T Consensus 529 ~~~~~-~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~---~---~----~~--~~~~~~~la~~~~~~G~~~~A~~~ 595 (903)
T PRK04841 529 YALWS-LLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLE---Q---L----PM--HEFLLRIRAQLLWEWARLDEAEQC 595 (903)
T ss_pred HHHHH-HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc---c---c----cH--HHHHHHHHHHHHHHhcCHHHHHHH
Confidence 11111 1223455577899999999888877654432100 0 0 00 012344678888889999999999
Q ss_pred HHHHHhCCC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCcc---------------------------
Q 017532 197 MNESIGRGN----GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFE--------------------------- 245 (370)
Q Consensus 197 ~~~~l~~~~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~--------------------------- 245 (370)
+++++.... ......+..+|.++...|++++|...++++..+.......
T Consensus 596 ~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 675 (903)
T PRK04841 596 ARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANW 675 (903)
T ss_pred HHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHH
Confidence 999877533 1123455678999999999999999999987764332100
Q ss_pred -----CCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 017532 246 -----DGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD------YNDIVAINNKALCLMYLRDLSDSIKVLE 314 (370)
Q Consensus 246 -----~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~------p~~~~~~~nla~~~~~~g~~~~A~~~l~ 314 (370)
......+......+...|.++...|++++|+..|++++... .....++..+|.++...|+.++|...+.
T Consensus 676 l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~ 755 (903)
T PRK04841 676 LRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLL 755 (903)
T ss_pred HHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 00000000001124568889999999999999999998763 1234578889999999999999999999
Q ss_pred HHHHhCCCc
Q 017532 315 NALERVPTV 323 (370)
Q Consensus 315 ~al~~~p~~ 323 (370)
++++.....
T Consensus 756 ~Al~la~~~ 764 (903)
T PRK04841 756 EALKLANRT 764 (903)
T ss_pred HHHHHhCcc
Confidence 999987553
No 149
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.79 E-value=3.4e-08 Score=92.02 Aligned_cols=72 Identities=22% Similarity=0.202 Sum_probs=66.7
Q ss_pred ccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 017532 248 LLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIV---AINNKALCLMYLRDLSDSIKVLENALERV 320 (370)
Q Consensus 248 ~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~---~~~nla~~~~~~g~~~~A~~~l~~al~~~ 320 (370)
+..+|+. ...++++|.+|+..|+|++|+..|+++++++|++.. +|+|+|.+|..+|++++|++.++++++..
T Consensus 68 ~~~dP~~-a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 68 SEADVKT-AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred ccCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3566777 889999999999999999999999999999999985 49999999999999999999999999983
No 150
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.79 E-value=7.1e-06 Score=86.71 Aligned_cols=278 Identities=12% Similarity=-0.004 Sum_probs=171.3
Q ss_pred hHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCC
Q 017532 34 SLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNR 113 (370)
Q Consensus 34 ~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~ 113 (370)
....+...|++.+|+..+..+ + ++..........++.+...|+++.+...+..+..-. .
T Consensus 347 aa~~~~~~g~~~~Al~~a~~a---~---d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~---------------~ 405 (903)
T PRK04841 347 AAEAWLAQGFPSEAIHHALAA---G---DAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEV---------------L 405 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHC---C---CHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHH---------------H
Confidence 445677788888888765553 1 121111112223566777888888777665551000 0
Q ss_pred CCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Q 017532 114 TGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVC 193 (370)
Q Consensus 114 ~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 193 (370)
.+ .|. +....+.+....|++.++...+..+....... ..... . .. ...+...++.++...|++++|
T Consensus 406 ~~--~~~-l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~----~~~~~---~-~~---~~~~~~~~a~~~~~~g~~~~A 471 (903)
T PRK04841 406 LE--NPR-LVLLQAWLAQSQHRYSEVNTLLARAEQELKDR----NIELD---G-TL---QAEFNALRAQVAINDGDPEEA 471 (903)
T ss_pred hc--Ccc-hHHHHHHHHHHCCCHHHHHHHHHHHHHhcccc----Ccccc---h-hH---HHHHHHHHHHHHHhCCCHHHH
Confidence 00 000 11222333356678777777665543322110 00000 0 00 012333567788889999999
Q ss_pred HHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHc
Q 017532 194 FDLMNESIGRGNGLDP----ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVG 269 (370)
Q Consensus 194 ~~~~~~~l~~~~~~~~----~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~ 269 (370)
...+++++...+..+. .+...+|.++...|++++|...+++++...... ..+........++|.++...
T Consensus 472 ~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~-------g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 472 ERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQH-------DVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh-------cchHHHHHHHHHHHHHHHHC
Confidence 9999999885552332 345778999999999999999999999876542 12222245677889999999
Q ss_pred CCHHHHHHHHHHHHhhC-----C---CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc--chhHHHHHHHHHHHHh
Q 017532 270 KDYVSAVREYEECIERD-----Y---NDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV--ALNETLVVNLCSMYEL 339 (370)
Q Consensus 270 g~~~eA~~~~~~~l~~~-----p---~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~--~~~~~~~~nl~~lyel 339 (370)
|++++|...+++++... + .....+..+|.++...|++++|...+++++...... ......+.+++.++..
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 99999999999998762 1 123456688999999999999999999998764321 1123344567777654
Q ss_pred ccCCchhhHHHHHHHH
Q 017532 340 AYVNHSDIKRTLSSWI 355 (370)
Q Consensus 340 ~~~~~~~~~~~ll~~~ 355 (370)
. +..+.....+...
T Consensus 625 ~--G~~~~A~~~l~~a 638 (903)
T PRK04841 625 R--GDLDNARRYLNRL 638 (903)
T ss_pred c--CCHHHHHHHHHHH
Confidence 3 3345555555444
No 151
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.78 E-value=2.4e-07 Score=86.73 Aligned_cols=122 Identities=16% Similarity=0.202 Sum_probs=105.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHH
Q 017532 179 CLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLV 258 (370)
Q Consensus 179 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~ 258 (370)
.+..++...++++.|+.+++++.+.+| .....+++++...++-.+|+..+++++...+. + ...
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~p----ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~---------d----~~L 236 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDP----EVAVLLARVYLLMNEEVEAIRLLNEALKENPQ---------D----SEL 236 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCC----cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC---------C----HHH
Confidence 344555667899999999999998777 35667899999999999999999999953332 2 566
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 017532 259 SRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENAL 317 (370)
Q Consensus 259 ~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al 317 (370)
+...+..++..++++.|++..++++...|++...|+.||.+|...|++++|+-.++.+-
T Consensus 237 L~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 237 LNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77889999999999999999999999999999999999999999999999999887553
No 152
>PRK11906 transcriptional regulator; Provisional
Probab=98.75 E-value=4.1e-07 Score=85.02 Aligned_cols=132 Identities=10% Similarity=-0.013 Sum_probs=110.9
Q ss_pred HHHHHHHHhcC---CHHHHHHHHHHHH---hCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHhhcC
Q 017532 178 NCLIGYHLSSK---EYNVCFDLMNESI---GRGNGLDPILVSKLGFIQMQV---------GDLEGAKKSFNRVEEMLNEG 242 (370)
Q Consensus 178 ~~la~~~~~~g---~~~~A~~~~~~~l---~~~~~~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~a~~l~~~~ 242 (370)
+.+|..++..+ ..+.|+.+|.+++ ..+| ....++..++.+++.. .+..+|...-++|+++.+.
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp-~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~- 336 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQT-LKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV- 336 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCc-ccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-
Confidence 45555554443 4567999999999 8888 8899999999888764 2456778888888865443
Q ss_pred CccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 243 KFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 243 ~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
. ..++..+|.++...|+++.|+..|++++.++|+.+.+++..|......|+.++|++.++++++++|.
T Consensus 337 -----------D-a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~ 404 (458)
T PRK11906 337 -----------D-GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPR 404 (458)
T ss_pred -----------C-HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence 2 6677889999999999999999999999999999999999999999999999999999999999996
Q ss_pred c
Q 017532 323 V 323 (370)
Q Consensus 323 ~ 323 (370)
-
T Consensus 405 ~ 405 (458)
T PRK11906 405 R 405 (458)
T ss_pred h
Confidence 4
No 153
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.73 E-value=3.8e-08 Score=70.80 Aligned_cols=67 Identities=21% Similarity=0.290 Sum_probs=57.9
Q ss_pred HHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 252 VEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD-------YNDIVAINNKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 252 p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~-------p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
|+. ..++.++|.++...|++++|+.+|++++++. |....+++++|.++...|++++|++++++++++
T Consensus 2 ~~~-a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDT-ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHH-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 445 7788999999999999999999999999761 223578999999999999999999999999875
No 154
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.72 E-value=2.7e-07 Score=71.76 Aligned_cols=99 Identities=14% Similarity=-0.005 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccch
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLD---PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSE 251 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~ 251 (370)
++++.++..+-..|+.++|+.+|++++..+. .. ..++..+|..+...|++++|+..+++++.-.++. ..+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL-~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~------~~~ 74 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGL-SGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDD------ELN 74 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc------ccc
Confidence 4678899999999999999999999999876 33 4677899999999999999999999998644432 112
Q ss_pred HHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHh
Q 017532 252 VEFRNLVSRNKALIYLVGKDYVSAVREYEECIE 284 (370)
Q Consensus 252 p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~ 284 (370)
..+....+.++...|+++||+..+-.++.
T Consensus 75 ----~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 75 ----AALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ----HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34455688999999999999999988775
No 155
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.71 E-value=4.6e-07 Score=71.70 Aligned_cols=107 Identities=18% Similarity=0.235 Sum_probs=89.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017532 207 LDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD 286 (370)
Q Consensus 207 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~ 286 (370)
..+..++.-|.-.++.|++++|++.|+.+..-.|.++ ....+.+.+|.+++..|++++|+..+++-++++
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~----------ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGE----------YAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCc----------ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 4567788889999999999999999999886544431 114556779999999999999999999999999
Q ss_pred CCCH---HHHHHHHHHHHHhCC---------------HHHHHHHHHHHHHhCCCc
Q 017532 287 YNDI---VAINNKALCLMYLRD---------------LSDSIKVLENALERVPTV 323 (370)
Q Consensus 287 p~~~---~~~~nla~~~~~~g~---------------~~~A~~~l~~al~~~p~~ 323 (370)
|.++ -+++..|.+++.... ..+|...|++.++..|+.
T Consensus 78 P~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 78 PTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence 8776 588899999998877 889999999999999975
No 156
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.71 E-value=1.5e-07 Score=85.66 Aligned_cols=139 Identities=12% Similarity=0.043 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCc
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGN--GL---DPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGL 248 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~--~~---~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~ 248 (370)
.+++-+||+.|+-.|+|+.|+...+.-+.+.. .+ .-.++.++|.++...|+++.|+++|++.+.+....
T Consensus 195 GRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAiel------ 268 (639)
T KOG1130|consen 195 GRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIEL------ 268 (639)
T ss_pred cchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHh------
Confidence 46788999999999999999998877665543 11 12567899999999999999999999988775542
Q ss_pred cchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 249 LSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD------YNDIVAINNKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 249 ~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~------p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
.+....++.-+.+|+.|....++++||.++.+-+++- -....++..+|.++-..|..++|+.+.+..++.
T Consensus 269 -g~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 269 -GNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred -cchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 2333346777889999999999999999999977663 234578899999999999999999999988776
No 157
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.71 E-value=2.7e-07 Score=92.03 Aligned_cols=145 Identities=13% Similarity=-0.001 Sum_probs=97.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHH
Q 017532 177 LNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRN 256 (370)
Q Consensus 177 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~ 256 (370)
+..+|.+|+..-|...|...|+++.++++ .+..+...++..|....+++.|....-++-+.. ......
T Consensus 495 f~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l~~~qka-----------~a~~~k 562 (1238)
T KOG1127|consen 495 FAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICLRAAQKA-----------PAFACK 562 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc-----------hHHHHH
Confidence 33444444444444444444444444444 444444444444444444444444422222111 111124
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 017532 257 LVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSM 336 (370)
Q Consensus 257 ~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~l 336 (370)
..|..+|..|.+.+++..|+..|+.++..+|.|...|..+|.+|...|++.-|++.|.++..++|.. --..|-.+.+
T Consensus 563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s---~y~~fk~A~~ 639 (1238)
T KOG1127|consen 563 ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS---KYGRFKEAVM 639 (1238)
T ss_pred hhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh---HHHHHHHHHH
Confidence 5667799999999999999999999999999999999999999999999999999999999999986 4455555554
No 158
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.71 E-value=6.2e-07 Score=81.35 Aligned_cols=138 Identities=12% Similarity=0.085 Sum_probs=100.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccc
Q 017532 176 VLNCLIGYHLSSKEYNVCFDLMNESIGRGN-GL----DPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLS 250 (370)
Q Consensus 176 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-~~----~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~ 250 (370)
.+...|..|-..|+|++|...|.++..... .. ....+...+.++.+. ++++|+.+|+++..+.... .
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~-------G 108 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREA-------G 108 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHC-------T
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhc-------C
Confidence 344556667777888888888888754332 01 123455566666555 9999999999999987653 3
Q ss_pred hHHHHHHHHHhHHHHHHHc-CCHHHHHHHHHHHHhhC--CCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 017532 251 EVEFRNLVSRNKALIYLVG-KDYVSAVREYEECIERD--YND----IVAINNKALCLMYLRDLSDSIKVLENALERVP 321 (370)
Q Consensus 251 ~p~~~~~~~~~~g~~~~~~-g~~~eA~~~~~~~l~~~--p~~----~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p 321 (370)
++...+..+..+|.+|... |++++|+++|+++++.. .+. ...+.++|.++...|+|++|++.|+++....-
T Consensus 109 ~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l 186 (282)
T PF14938_consen 109 RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCL 186 (282)
T ss_dssp -HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCC
T ss_pred cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhh
Confidence 4555578889999999999 99999999999999873 112 25677899999999999999999999988643
No 159
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.71 E-value=4.4e-07 Score=71.82 Aligned_cols=108 Identities=17% Similarity=0.147 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGN--GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEV 252 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p 252 (370)
..++.-|...++.|+|++|+..++.+....| .-...+...||.+|+..|++++|+..+++-+++.|.+ |
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~h---------p 81 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTH---------P 81 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------C
Confidence 4456778888899999999999999999988 2345778999999999999999999999999987763 4
Q ss_pred HHHHHHHHhHHHHHHHcCC---------------HHHHHHHHHHHHhhCCCCHHH
Q 017532 253 EFRNLVSRNKALIYLVGKD---------------YVSAVREYEECIERDYNDIVA 292 (370)
Q Consensus 253 ~~~~~~~~~~g~~~~~~g~---------------~~eA~~~~~~~l~~~p~~~~~ 292 (370)
+. ..++..+|++++.+.. ..+|...|++++...|++..+
T Consensus 82 ~v-dYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 82 NV-DYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred Cc-cHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 44 6788999999999988 899999999999999987644
No 160
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.70 E-value=2e-05 Score=71.85 Aligned_cols=129 Identities=13% Similarity=0.058 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
..+...++.-+...|++++|..+..++++..- +. .+...++ ..+-|+.+.=++..++.+...+ .+|
T Consensus 263 p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~-D~-~L~~~~~--~l~~~d~~~l~k~~e~~l~~h~---------~~p- 328 (400)
T COG3071 263 PELVVAYAERLIRLGDHDEAQEIIEDALKRQW-DP-RLCRLIP--RLRPGDPEPLIKAAEKWLKQHP---------EDP- 328 (400)
T ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc-Ch-hHHHHHh--hcCCCCchHHHHHHHHHHHhCC---------CCh-
Confidence 45566778888999999999999999998765 33 3333333 3456888888888888885433 344
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERV 320 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~ 320 (370)
..+..+|..+++.+.|.+|.++|+.++...|+ ...++-+|.++...|+..+|.+..++++...
T Consensus 329 ---~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 329 ---LLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred ---hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 45778999999999999999999999998775 6778889999999999999999999998653
No 161
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.70 E-value=1.4e-07 Score=67.73 Aligned_cols=71 Identities=13% Similarity=0.143 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh
Q 017532 209 PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIER 285 (370)
Q Consensus 209 ~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~ 285 (370)
..++..+|.+|..+|++++|+++|++++++..... ...|.. +.++.++|.++...|++++|+++|++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~~~-a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLG-----DDHPDT-ANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-----THHHHH-HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHC-----CCCHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46789999999999999999999999999854421 234555 889999999999999999999999999875
No 162
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.69 E-value=2e-06 Score=76.02 Aligned_cols=168 Identities=13% Similarity=0.046 Sum_probs=125.0
Q ss_pred CcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-
Q 017532 130 PIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLD- 208 (370)
Q Consensus 130 ~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~- 208 (370)
....|+.++|+..|..++...+... ....+.+.+|.++++.++|++|+..+++.++.+| ++
T Consensus 42 ~~~~g~y~~Ai~~f~~l~~~yP~s~-----------------~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P-~~~ 103 (243)
T PRK10866 42 KLQDGNWKQAITQLEALDNRYPFGP-----------------YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP-THP 103 (243)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCh-----------------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc-CCC
Confidence 3667999999999888765443211 0013456899999999999999999999999999 54
Q ss_pred --HHHHHHHHHHHHHcC---------------C---HHHHHHHHHHHHHHhhcCCccCC-----ccchHHHHHHHHHhHH
Q 017532 209 --PILVSKLGFIQMQVG---------------D---LEGAKKSFNRVEEMLNEGKFEDG-----LLSEVEFRNLVSRNKA 263 (370)
Q Consensus 209 --~~~~~~lg~~~~~~g---------------~---~~~A~~~~~~a~~l~~~~~~~~~-----~~~~p~~~~~~~~~~g 263 (370)
+.+++.+|.++...+ | ..+|+..|++.++..|++..... ..+... .+.-.+..|
T Consensus 104 ~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~-la~~e~~ia 182 (243)
T PRK10866 104 NIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDR-LAKYELSVA 182 (243)
T ss_pred chHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 367788898865554 2 24678899999888777521000 000111 133445679
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHH
Q 017532 264 LIYLVGKDYVSAVREYEECIERDYNDI---VAINNKALCLMYLRDLSDSIKVLENA 316 (370)
Q Consensus 264 ~~~~~~g~~~eA~~~~~~~l~~~p~~~---~~~~nla~~~~~~g~~~~A~~~l~~a 316 (370)
..|++.|+|.-|+.-|+.+++..|+.+ .++..++.++..+|..++|.......
T Consensus 183 ~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 183 EYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 999999999999999999999988754 78899999999999999999887544
No 163
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.67 E-value=5.7e-06 Score=85.47 Aligned_cols=229 Identities=11% Similarity=0.039 Sum_probs=167.1
Q ss_pred CCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCcccchhHHHHHHHcC--cccCCccc
Q 017532 61 TQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLP--IKLSNRQV 138 (370)
Q Consensus 61 ~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~--~~~g~~~~ 138 (370)
.+|++.+.|..| ..-.+.++..+.|.+...++..... .....+ -++++.|.+- ..-|..+.
T Consensus 1453 ssPNSSi~WI~Y-Maf~LelsEiekAR~iaerAL~tIN------------~REeeE----KLNiWiA~lNlEn~yG~ees 1515 (1710)
T KOG1070|consen 1453 SSPNSSILWIRY-MAFHLELSEIEKARKIAERALKTIN------------FREEEE----KLNIWIAYLNLENAYGTEES 1515 (1710)
T ss_pred cCCCcchHHHHH-HHHHhhhhhhHHHHHHHHHHhhhCC------------cchhHH----HHHHHHHHHhHHHhhCcHHH
Confidence 578877877776 5558889999999998888743211 000101 1233444331 22232222
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 017532 139 GLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFI 218 (370)
Q Consensus 139 al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~ 218 (370)
-.+.|+.+...|... .+|..|..+|...+.+++|.++|+.+++... +....|...|..
T Consensus 1516 l~kVFeRAcqycd~~---------------------~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~f 1573 (1710)
T KOG1070|consen 1516 LKKVFERACQYCDAY---------------------TVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADF 1573 (1710)
T ss_pred HHHHHHHHHHhcchH---------------------HHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHH
Confidence 222233333323222 4667888999999999999999999999988 889999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 017532 219 QMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKAL 298 (370)
Q Consensus 219 ~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~ 298 (370)
+++..+-+.|...+++|+...|..+ + .....-.+.+-|+.|+.+.+...|+-.+..+|.-..+|+-+..
T Consensus 1574 Ll~~ne~~aa~~lL~rAL~~lPk~e-------H----v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid 1642 (1710)
T KOG1070|consen 1574 LLRQNEAEAARELLKRALKSLPKQE-------H----VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYID 1642 (1710)
T ss_pred HhcccHHHHHHHHHHHHHhhcchhh-------h----HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHH
Confidence 9999999999999999997666531 2 4445567899999999999999999999999999999999999
Q ss_pred HHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhc
Q 017532 299 CLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELA 340 (370)
Q Consensus 299 ~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~ 340 (370)
.-.+.|+.+.+...|++++.+.=.. -.-..+|+.=.=||..
T Consensus 1643 ~eik~~~~~~vR~lfeRvi~l~l~~-kkmKfffKkwLeyEk~ 1683 (1710)
T KOG1070|consen 1643 MEIKHGDIKYVRDLFERVIELKLSI-KKMKFFFKKWLEYEKS 1683 (1710)
T ss_pred HHHccCCHHHHHHHHHHHHhcCCCh-hHhHHHHHHHHHHHHh
Confidence 9999999999999999999986443 1134445555556643
No 164
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.64 E-value=1.1e-06 Score=75.58 Aligned_cols=108 Identities=20% Similarity=0.189 Sum_probs=85.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017532 207 LDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD 286 (370)
Q Consensus 207 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~ 286 (370)
.++..++..|...++.|++++|+..|+++....|.+ ..- ..+.+.+|.+++..|++++|+..|++.+...
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s------~~a----~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNS------PYA----PQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTS------TTH----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC------hHH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 456788999999999999999999999999876654 222 4567889999999999999999999999999
Q ss_pred CCCH---HHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHhCCCcc
Q 017532 287 YNDI---VAINNKALCLMYLR-----------DLSDSIKVLENALERVPTVA 324 (370)
Q Consensus 287 p~~~---~~~~nla~~~~~~g-----------~~~~A~~~l~~al~~~p~~~ 324 (370)
|+++ .+++.+|.+++... ...+|+..|+..+...|+..
T Consensus 73 P~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~ 124 (203)
T PF13525_consen 73 PNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSE 124 (203)
T ss_dssp TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTST
T ss_pred CCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCch
Confidence 8866 58889999876653 34689999999999999864
No 165
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.63 E-value=3.1e-06 Score=75.85 Aligned_cols=163 Identities=14% Similarity=0.159 Sum_probs=119.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------HhhcC-CccCC
Q 017532 179 CLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEE----------MLNEG-KFEDG 247 (370)
Q Consensus 179 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~----------l~~~~-~~~~~ 247 (370)
.+|.+++..|+|++|+..|.-+...+. .+..++.+|+.+++.+|.+.+|.+.-.++-+ +..+. ....-
T Consensus 62 Wia~C~fhLgdY~~Al~~Y~~~~~~~~-~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~ 140 (557)
T KOG3785|consen 62 WIAHCYFHLGDYEEALNVYTFLMNKDD-APAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRI 140 (557)
T ss_pred HHHHHHHhhccHHHHHHHHHHHhccCC-CCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHH
Confidence 467899999999999999999998777 7888999999999999999999988776320 00000 00000
Q ss_pred ccchHHH--HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcch
Q 017532 248 LLSEVEF--RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVAL 325 (370)
Q Consensus 248 ~~~~p~~--~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~ 325 (370)
.....+. ..+-...++-+.+..--|.+|++.|.+++..+|+....-.++|.||.++.-++-+.+.+.--++..|+..+
T Consensus 141 ~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdSti 220 (557)
T KOG3785|consen 141 LTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTI 220 (557)
T ss_pred HHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHH
Confidence 0000000 01223446777777788999999999999999998888889999999999999999999999999998522
Q ss_pred hHHHHHHHHHHHHhccCCc
Q 017532 326 NETLVVNLCSMYELAYVNH 344 (370)
Q Consensus 326 ~~~~~~nl~~lyel~~~~~ 344 (370)
..-..+|.+|.+.....
T Consensus 221 --A~NLkacn~fRl~ngr~ 237 (557)
T KOG3785|consen 221 --AKNLKACNLFRLINGRT 237 (557)
T ss_pred --HHHHHHHHHhhhhccch
Confidence 22234556677665533
No 166
>PRK11906 transcriptional regulator; Provisional
Probab=98.61 E-value=5.6e-06 Score=77.60 Aligned_cols=117 Identities=12% Similarity=0.130 Sum_probs=100.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHH
Q 017532 188 KEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYL 267 (370)
Q Consensus 188 g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~ 267 (370)
.+..+|.+..+++++.++ .|+.++..+|.+....|+++.|...|++|..+ +|+. +.++...|.+.+
T Consensus 318 ~~~~~a~~~A~rAveld~-~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L------------~Pn~-A~~~~~~~~~~~ 383 (458)
T PRK11906 318 LAAQKALELLDYVSDITT-VDGKILAIMGLITGLSGQAKVSHILFEQAKIH------------STDI-ASLYYYRALVHF 383 (458)
T ss_pred HHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc------------CCcc-HHHHHHHHHHHH
Confidence 456689999999999999 99999999999999999999999999999955 5555 888999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHHhCCHHHHHHHHHHHHH
Q 017532 268 VGKDYVSAVREYEECIERDYNDIVAINN-KALCLMYLRDLSDSIKVLENALE 318 (370)
Q Consensus 268 ~~g~~~eA~~~~~~~l~~~p~~~~~~~n-la~~~~~~g~~~~A~~~l~~al~ 318 (370)
..|+.++|++.++++++++|.-..+-.. +.+-.+....+++|++.|-+-.+
T Consensus 384 ~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (458)
T PRK11906 384 HNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKETE 435 (458)
T ss_pred HcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhccc
Confidence 9999999999999999999987655443 33425667789999999877544
No 167
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.60 E-value=4.9e-06 Score=83.38 Aligned_cols=262 Identities=13% Similarity=0.103 Sum_probs=136.3
Q ss_pred ccccc-CCCCCcCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCC
Q 017532 18 LTNAF-GSLNDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDF 96 (370)
Q Consensus 18 ~~~~~-~~~~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l 96 (370)
+++|+ ..|+|+..-...++..-.+|+|..|++.+.++.. .+|.+....+. .+...+-+|.|.+|...+..+..-
T Consensus 585 fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~----LrP~s~y~~fk-~A~~ecd~GkYkeald~l~~ii~~ 659 (1238)
T KOG1127|consen 585 FQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL----LRPLSKYGRFK-EAVMECDNGKYKEALDALGLIIYA 659 (1238)
T ss_pred HHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh----cCcHhHHHHHH-HHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34455 3778888888899999999999999999988643 46874332222 356688899999999887766322
Q ss_pred CCCCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHH---
Q 017532 97 NSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKRE--- 173 (370)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~--- 173 (370)
.+...- . ........+|..... .-.|-...+.+.++..+..+.-.+..... +..-.|.-..
T Consensus 660 ~s~e~~---------~-q~gLaE~~ir~akd~--~~~gf~~kavd~~eksie~f~~~l~h~~~----~~~~~Wi~asdac 723 (1238)
T KOG1127|consen 660 FSLERT---------G-QNGLAESVIRDAKDS--AITGFQKKAVDFFEKSIESFIVSLIHSLQ----SDRLQWIVASDAC 723 (1238)
T ss_pred HHHHHH---------h-hhhHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHHHhhh----hhHHHHHHHhHHH
Confidence 110100 0 011122233432221 23344445555555544443333221100 0000110000
Q ss_pred ---------------------------------------------------HHHHHHHHHHHHh--------cCCHHHHH
Q 017532 174 ---------------------------------------------------IFVLNCLIGYHLS--------SKEYNVCF 194 (370)
Q Consensus 174 ---------------------------------------------------~~~~~~la~~~~~--------~g~~~~A~ 194 (370)
+..++++|..|++ +.+-..|+
T Consensus 724 ~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai 803 (1238)
T KOG1127|consen 724 YIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAI 803 (1238)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHH
Confidence 2233444443333 12223455
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHH
Q 017532 195 DLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVS 274 (370)
Q Consensus 195 ~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~e 274 (370)
..+.++++... ++...|+.||-+ ...|.+.-|..+|-+...+ +|.. ...|.|+|.++....+++.
T Consensus 804 ~c~KkaV~L~a-nn~~~WnaLGVl-sg~gnva~aQHCfIks~~s------------ep~~-~~~W~NlgvL~l~n~d~E~ 868 (1238)
T KOG1127|consen 804 RCCKKAVSLCA-NNEGLWNALGVL-SGIGNVACAQHCFIKSRFS------------EPTC-HCQWLNLGVLVLENQDFEH 868 (1238)
T ss_pred HHHHHHHHHhh-ccHHHHHHHHHh-hccchhhhhhhhhhhhhhc------------cccc-hhheeccceeEEecccHHH
Confidence 55555555555 555555555544 3335555555555555422 2222 4455566666666666666
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 017532 275 AVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLEN 315 (370)
Q Consensus 275 A~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~ 315 (370)
|...|.++..++|.|...|...+.+....|+.-+++..+..
T Consensus 869 A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 869 AEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred hhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 66666666666666666666556555566655555555555
No 168
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.59 E-value=1.6e-06 Score=66.67 Aligned_cols=94 Identities=18% Similarity=0.169 Sum_probs=45.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----H
Q 017532 216 GFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI----V 291 (370)
Q Consensus 216 g~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~----~ 291 (370)
|......|+++.|++.|.+++.++|.. ..+++|++..+.-+|+.++|+..+++++++..+.. .
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~r-------------aSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacq 116 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPER-------------ASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQ 116 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccc-------------hHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHH
Confidence 344444555555555555555444332 33444555555555555555555555555432211 2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 292 AINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 292 ~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
++..+|..|...|+.+.|...|+.+-++..+
T Consensus 117 a~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 117 AFVQRGLLYRLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHHHHHHHHHHhCchHHHHHhHHHHHHhCCH
Confidence 3445555555555555555555555555443
No 169
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.58 E-value=2.1e-06 Score=74.97 Aligned_cols=107 Identities=16% Similarity=-0.022 Sum_probs=75.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHH
Q 017532 178 NCLIGYHLSSKEYNVCFDLMNESIGRGNG--LDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFR 255 (370)
Q Consensus 178 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~--~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~ 255 (370)
|..+.-++..|+|..|...|..-++.+|. ..+.+++.||.+++.+|++++|...|..+.+-.+++ ..-
T Consensus 145 Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s------~KA---- 214 (262)
T COG1729 145 YNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKS------PKA---- 214 (262)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCC------CCC----
Confidence 45556667778888888888888887771 234677788888888888888888887777654443 222
Q ss_pred HHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 017532 256 NLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAIN 294 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~ 294 (370)
.+.++-+|.+...+|+.++|...|+++++..|....+..
T Consensus 215 pdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 215 PDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 344666777777788888888888887777777665543
No 170
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=1.5e-05 Score=68.96 Aligned_cols=232 Identities=13% Similarity=0.077 Sum_probs=154.2
Q ss_pred CCcCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccc
Q 017532 26 NDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYET 105 (370)
Q Consensus 26 ~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~ 105 (370)
.|+..+.=--+.++..|.|...+.-... +- ..| ......-...+-.-++-+.-...+.......
T Consensus 39 ~~~e~d~y~~raylAlg~~~~~~~eI~~----~~-~~~---lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~-------- 102 (299)
T KOG3081|consen 39 TDVELDVYMYRAYLALGQYQIVISEIKE----GK-ATP---LQAVRLLAEYLELESNKKSILASLYELVADS-------- 102 (299)
T ss_pred chhHHHHHHHHHHHHccccccccccccc----cc-CCh---HHHHHHHHHHhhCcchhHHHHHHHHHHHHhh--------
Confidence 4555566677888899999888743222 10 112 3333322333444455555555444442110
Q ss_pred cCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHH
Q 017532 106 YPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHL 185 (370)
Q Consensus 106 ~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 185 (370)
..++. ...+++.+.+++..|++++|++.+.... ... +.-.-..++.
T Consensus 103 -------~~~sn--~i~~l~aa~i~~~~~~~deAl~~~~~~~-~lE------------------------~~Al~VqI~l 148 (299)
T KOG3081|consen 103 -------TDGSN--LIDLLLAAIIYMHDGDFDEALKALHLGE-NLE------------------------AAALNVQILL 148 (299)
T ss_pred -------ccchh--HHHHHHhhHHhhcCCChHHHHHHHhccc-hHH------------------------HHHHHHHHHH
Confidence 11111 1245666777889999999988765521 111 1112335788
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHh
Q 017532 186 SSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQ----VGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRN 261 (370)
Q Consensus 186 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~ 261 (370)
++.+++-|...++++...+. ..++..||..|.. .+++.+|.-+|+..-. ...|. ....+.
T Consensus 149 k~~r~d~A~~~lk~mq~ide---d~tLtQLA~awv~la~ggek~qdAfyifeE~s~-----------k~~~T--~~llnG 212 (299)
T KOG3081|consen 149 KMHRFDLAEKELKKMQQIDE---DATLTQLAQAWVKLATGGEKIQDAFYIFEELSE-----------KTPPT--PLLLNG 212 (299)
T ss_pred HHHHHHHHHHHHHHHHccch---HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc-----------ccCCC--hHHHcc
Confidence 88999999999999988755 4566666666654 3467888888988863 12332 345678
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHhCCCc
Q 017532 262 KALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLE-NALERVPTV 323 (370)
Q Consensus 262 ~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~-~al~~~p~~ 323 (370)
.+.|.+.+|+|++|...++.++..+++++.++.|+.++....|+..++.+-+- +....+|+.
T Consensus 213 ~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 213 QAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999999999999999988876554 455556764
No 171
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.58 E-value=4.1e-07 Score=64.40 Aligned_cols=70 Identities=23% Similarity=0.149 Sum_probs=60.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 017532 215 LGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAIN 294 (370)
Q Consensus 215 lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~ 294 (370)
|..+|++.+++++|++++++++.+.|+ . ...+..+|.+++..|++++|+..|+++++.+|+++.+..
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~------------~-~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPD------------D-PELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcc------------c-chhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 357899999999999999999976443 3 667888999999999999999999999999999988766
Q ss_pred HHH
Q 017532 295 NKA 297 (370)
Q Consensus 295 nla 297 (370)
.++
T Consensus 68 ~~a 70 (73)
T PF13371_consen 68 LRA 70 (73)
T ss_pred HHH
Confidence 554
No 172
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=1.1e-06 Score=76.88 Aligned_cols=191 Identities=16% Similarity=0.126 Sum_probs=136.8
Q ss_pred HHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHH
Q 017532 74 TLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREK 153 (370)
Q Consensus 74 ~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~ 153 (370)
+.-|++-.+|++|+..+...++..+ +. . .--.+.+.++++..++..|-+-++.+-...++.
T Consensus 17 iy~lI~d~ry~DaI~~l~s~~Er~p--------------~~--r---AgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~ 77 (459)
T KOG4340|consen 17 VYRLIRDARYADAIQLLGSELERSP--------------RS--R---AGLSLLGYCYYRLQEFALAAECYEQLGQLHPEL 77 (459)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCc--------------cc--h---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHH
Confidence 4567889999999998876644321 00 0 112345677777777777777666654433332
Q ss_pred HHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 017532 154 LARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFN 233 (370)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 233 (370)
. ...+--+..+++.+.+..|+.....+..... -....+..-+-+..+.||+..+....+
T Consensus 78 ~--------------------qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~-L~~~~lqLqaAIkYse~Dl~g~rsLve 136 (459)
T KOG4340|consen 78 E--------------------QYRLYQAQSLYKACIYADALRVAFLLLDNPA-LHSRVLQLQAAIKYSEGDLPGSRSLVE 136 (459)
T ss_pred H--------------------HHHHHHHHHHHHhcccHHHHHHHHHhcCCHH-HHHHHHHHHHHHhcccccCcchHHHHH
Confidence 1 1112334577888999999999888754322 223344455677788899998888877
Q ss_pred HHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 017532 234 RVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVL 313 (370)
Q Consensus 234 ~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l 313 (370)
+.- . ..+ +...++.|.+.++.|+|++|+.-|+.+++...-++.+-+|+|.|++..|+++.|+++.
T Consensus 137 Qlp----~-------en~----Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~i 201 (459)
T KOG4340|consen 137 QLP----S-------ENE----ADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHI 201 (459)
T ss_pred hcc----C-------CCc----cchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHH
Confidence 653 1 111 5567889999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHh
Q 017532 314 ENALER 319 (370)
Q Consensus 314 ~~al~~ 319 (370)
.++++.
T Consensus 202 SEIieR 207 (459)
T KOG4340|consen 202 SEIIER 207 (459)
T ss_pred HHHHHh
Confidence 777654
No 173
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.53 E-value=2.8e-06 Score=74.14 Aligned_cols=102 Identities=13% Similarity=0.112 Sum_probs=90.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCC--
Q 017532 212 VSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYND-- 289 (370)
Q Consensus 212 ~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~-- 289 (370)
.|..|.-+++.|||.+|+..|..-++..|++ ... ..+++.+|.+++.+|+|++|...|..++...|..
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s------~~~----~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~K 213 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNS------TYT----PNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPK 213 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------ccc----chhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCC
Confidence 6888999999999999999999999876664 222 3456779999999999999999999999987665
Q ss_pred -HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 290 -IVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 290 -~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
+.+++-+|.+...+|+.++|...|+++++..|+.
T Consensus 214 ApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 214 APDALLKLGVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 5789999999999999999999999999999986
No 174
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.52 E-value=3.7e-07 Score=63.63 Aligned_cols=67 Identities=16% Similarity=0.094 Sum_probs=56.6
Q ss_pred HHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 017532 219 QMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKAL 298 (370)
Q Consensus 219 ~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~ 298 (370)
++..|++++|++.|++++...|++ ..+++.+|.+++..|++++|...+++++..+|+++.++.-++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~-------------~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDN-------------PEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTS-------------HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCC-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 357899999999999999765442 6678889999999999999999999999999998877766653
No 175
>PRK15331 chaperone protein SicA; Provisional
Probab=98.51 E-value=3.5e-06 Score=68.23 Aligned_cols=101 Identities=10% Similarity=-0.077 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
...+..|--++..|++++|..+|+-+...++ .++..+..||.++...|++++|+..|..+..+..+++ .|
T Consensus 38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp-------~p-- 107 (165)
T PRK15331 38 DGLYAHAYEFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDY-------RP-- 107 (165)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC-------Cc--
Confidence 4456777888999999999999999999999 8899999999999999999999999999987755431 22
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI 290 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~ 290 (370)
.+..|.|++..|+.++|..+|+.+++ .|.+.
T Consensus 108 ----~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 108 ----VFFTGQCQLLMRKAAKARQCFELVNE-RTEDE 138 (165)
T ss_pred ----cchHHHHHHHhCCHHHHHHHHHHHHh-CcchH
Confidence 45689999999999999999999998 45543
No 176
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.49 E-value=3.7e-07 Score=81.29 Aligned_cols=98 Identities=20% Similarity=0.208 Sum_probs=88.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 017532 213 SKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVA 292 (370)
Q Consensus 213 ~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~ 292 (370)
-..|+-|+++|+|++|+.+|.+++.+.+.+ ...+.|++..|++..+|..|...++.++.++-....+
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~N-------------pV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KA 167 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHN-------------PVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKA 167 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCC-------------ccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHH
Confidence 345899999999999999999999654432 3446789999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 293 INNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 293 ~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
|..++.+-..+|...+|.+.++.++++.|+.
T Consensus 168 YSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 168 YSRRMQARESLGNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHHHHHHHhhHHHHHHhHHHHHhhCccc
Confidence 9999999999999999999999999999986
No 177
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.48 E-value=1.1e-05 Score=66.08 Aligned_cols=131 Identities=12% Similarity=0.007 Sum_probs=107.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHH
Q 017532 176 VLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFR 255 (370)
Q Consensus 176 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~ 255 (370)
-.+.|++.+.+.|++.+|...|++++.---.+++..+..+++..+..+++..|...+++..+..+.. ..|+
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~-------r~pd-- 161 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF-------RSPD-- 161 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc-------CCCC--
Confidence 3457888999999999999999999864333788889999999999999999999999998754432 1222
Q ss_pred HHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 017532 256 NLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALE 318 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~ 318 (370)
.....|.++...|++.+|...|+.++...|. +.+....+..+.++|+.++|...+..+..
T Consensus 162 --~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 162 --GHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred --chHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 2345789999999999999999999998875 66777789999999999999887766543
No 178
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=4.3e-06 Score=73.92 Aligned_cols=101 Identities=9% Similarity=-0.051 Sum_probs=86.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHhhcCCccCCccchH
Q 017532 176 VLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGD---LEGAKKSFNRVEEMLNEGKFEDGLLSEV 252 (370)
Q Consensus 176 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~a~~l~~~~~~~~~~~~~p 252 (370)
-+..||.+|+..|+++.|...|.+++++.| ++++.+..+|.++..+.+ ..++...|++++.+. |
T Consensus 158 gW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D------------~ 224 (287)
T COG4235 158 GWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARALLRQALALD------------P 224 (287)
T ss_pred hHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC------------C
Confidence 345899999999999999999999999999 999999999988776543 468999999999643 3
Q ss_pred HHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 017532 253 EFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI 290 (370)
Q Consensus 253 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~ 290 (370)
+. ..+.+.+|..++.+|+|.+|+..++.++...|.+.
T Consensus 225 ~~-iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 225 AN-IRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred cc-HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 33 56677899999999999999999999999986543
No 179
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.43 E-value=1.7e-05 Score=77.59 Aligned_cols=140 Identities=15% Similarity=0.070 Sum_probs=102.7
Q ss_pred hCCCCCCHHHH--HHHHHHHHHcCC---HHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHc-------
Q 017532 202 GRGNGLDPILV--SKLGFIQMQVGD---LEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVG------- 269 (370)
Q Consensus 202 ~~~~~~~~~~~--~~lg~~~~~~g~---~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~------- 269 (370)
...| .+..+| +..|.-++..++ ++.|+.+|++++++ +|++ +.++-.++.++...
T Consensus 331 ~~~~-~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l------------dP~~-a~a~A~la~~~~~~~~~~~~~ 396 (517)
T PRK10153 331 QGLP-HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS------------EPDF-TYAQAEKALADIVRHSQQPLD 396 (517)
T ss_pred ccCC-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh------------CCCc-HHHHHHHHHHHHHHHhcCCcc
Confidence 4445 666555 667888877665 78999999999965 4444 55666666666443
Q ss_pred -CCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchh
Q 017532 270 -KDYVSAVREYEECIER--DYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSD 346 (370)
Q Consensus 270 -g~~~eA~~~~~~~l~~--~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~ 346 (370)
++...+....++++.. +|.++.++.-+|..+...|++++|+..+++|+.++|+ ...++.++.+|++..+ .+
T Consensus 397 ~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps----~~a~~~lG~~~~~~G~--~~ 470 (517)
T PRK10153 397 EKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS----WLNYVLLGKVYELKGD--NR 470 (517)
T ss_pred HHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHcCC--HH
Confidence 2345667777776664 7888899999999999999999999999999999995 4578889999986544 56
Q ss_pred hHHHHHHHHhhhCCC
Q 017532 347 IKRTLSSWIGRVAPD 361 (370)
Q Consensus 347 ~~~~ll~~~~~~~~d 361 (370)
++.+..+.--+..|.
T Consensus 471 eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 471 LAADAYSTAFNLRPG 485 (517)
T ss_pred HHHHHHHHHHhcCCC
Confidence 666665544444443
No 180
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.42 E-value=3.5e-06 Score=70.65 Aligned_cols=103 Identities=18% Similarity=0.167 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
+..++.+|..|-..|-+.-|.-.+.+++.+.| .-+.+++.+|.-+...|+++.|.+.|+..+++ +|.
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P-~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL------------Dp~ 131 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL------------DPT 131 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCC-CcHHHHHHHHHHHHhcccchHHHHHhhhHhcc------------CCc
Confidence 35677788888888888888888999999999 88888999998888899999999999988854 444
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI 290 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~ 290 (370)
. ..+..|+|..++--|++.-|...+.+--..||+||
T Consensus 132 y-~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 132 Y-NYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDP 167 (297)
T ss_pred c-hHHHhccceeeeecCchHhhHHHHHHHHhcCCCCh
Confidence 4 66778888888888888888888888777777765
No 181
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.38 E-value=3.2e-06 Score=75.46 Aligned_cols=102 Identities=8% Similarity=0.027 Sum_probs=91.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHH
Q 017532 179 CLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLV 258 (370)
Q Consensus 179 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~ 258 (370)
..|+-|+++|.|++||.+|.+.+..+| .++..+.+.+..|++...|..|+..++.|+.+. ... ..+
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P-~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd------------~~Y-~KA 167 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYP-HNPVYHINRALAYLKQKSFAQAEEDCEAAIALD------------KLY-VKA 167 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCC-CCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh------------HHH-HHH
Confidence 578899999999999999999999999 999999999999999999999999999999653 333 667
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 017532 259 SRNKALIYLVGKDYVSAVREYEECIERDYNDIVAIN 294 (370)
Q Consensus 259 ~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~ 294 (370)
|..+|..-+..|...||.+.++.++++.|++....-
T Consensus 168 YSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK 203 (536)
T KOG4648|consen 168 YSRRMQARESLGNNMEAKKDCETVLALEPKNIELKK 203 (536)
T ss_pred HHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHH
Confidence 777999999999999999999999999999765443
No 182
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.37 E-value=5e-06 Score=68.84 Aligned_cols=103 Identities=16% Similarity=0.148 Sum_probs=86.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 179 CLIGYHLSSKEYNVCFDLMNESIGRGNGL----DPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 179 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~----~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
.-|+-++..|+|++|..-|..++..-|.. ...++.+.|-+.++++.++.|+..+.+++++. |..
T Consensus 100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~------------pty 167 (271)
T KOG4234|consen 100 KEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN------------PTY 167 (271)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC------------chh
Confidence 45678889999999999999999998822 23567888999999999999999999999654 433
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAIN 294 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~ 294 (370)
..++.-++.+|-++.+|++|++.|.++++.+|....+.-
T Consensus 168 -~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~ 206 (271)
T KOG4234|consen 168 -EKALERRAEAYEKMEKYEEALEDYKKILESDPSRREARE 206 (271)
T ss_pred -HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHH
Confidence 445556899999999999999999999999998765543
No 183
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.33 E-value=4e-05 Score=59.13 Aligned_cols=99 Identities=11% Similarity=0.057 Sum_probs=86.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHH
Q 017532 180 LIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVS 259 (370)
Q Consensus 180 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~ 259 (370)
-|..+...|+.+.|++.|.+++..-| ..+.++++.+..+.-+|+.++|..-+++++++..+. .... ..++
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P-~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~--------trta-cqa~ 118 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAP-ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ--------TRTA-CQAF 118 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhcc-cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc--------chHH-HHHH
Confidence 34456677999999999999999999 999999999999999999999999999999986542 2222 6788
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017532 260 RNKALIYLVGKDYVSAVREYEECIERDYN 288 (370)
Q Consensus 260 ~~~g~~~~~~g~~~eA~~~~~~~l~~~p~ 288 (370)
..+|.+|...|+-+.|...|+.+.++...
T Consensus 119 vQRg~lyRl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 119 VQRGLLYRLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHHHHHHHHhCchHHHHHhHHHHHHhCCH
Confidence 99999999999999999999999887654
No 184
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.32 E-value=0.00017 Score=61.52 Aligned_cols=150 Identities=18% Similarity=0.166 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGF-IQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~-~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
..+...+..+...+++..++..+..++...+ .........+. ++...|+++.|...|++++...+. ...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---------~~~ 165 (291)
T COG0457 96 EALLNLGLLLEALGKYEEALELLEKALALDP-DPDLAEALLALGALYELGDYEEALELYEKALELDPE---------LNE 165 (291)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHcCCC-CcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---------ccc
Confidence 4555677788888999999999999999887 55444555555 899999999999999999752210 001
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHH
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERDYN-DIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVN 332 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~-~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~n 332 (370)
. .......+..+...+++++|+..+.+++...+. ....+.+++.++...+++++|+..+..++...|.. ......
T Consensus 166 ~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~ 241 (291)
T COG0457 166 L-AEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDN---AEALYN 241 (291)
T ss_pred h-HHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCccc---HHHHhh
Confidence 1 444555666688899999999999999999999 68999999999999999999999999999999873 455666
Q ss_pred HHHHHH
Q 017532 333 LCSMYE 338 (370)
Q Consensus 333 l~~lye 338 (370)
++..+.
T Consensus 242 ~~~~~~ 247 (291)
T COG0457 242 LALLLL 247 (291)
T ss_pred HHHHHH
Confidence 666665
No 185
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.30 E-value=7.1e-06 Score=76.78 Aligned_cols=63 Identities=5% Similarity=-0.182 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPI---LVSKLGFIQMQVGDLEGAKKSFNRVEE 237 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~---~~~~lg~~~~~~g~~~~A~~~~~~a~~ 237 (370)
...++++|..|...|+|++|+..|+++++++| ++.. +++++|.+|..+|++++|+.+|+++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~P-d~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNP-NPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55666666666666777777777777666666 5553 366666666666776667666666664
No 186
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.29 E-value=9.7e-05 Score=66.69 Aligned_cols=144 Identities=15% Similarity=0.088 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCcc
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGN-GLDP----ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLL 249 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-~~~~----~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~ 249 (370)
.++..++..+..++.++++++.|+.+++... .+|+ .+...||..+-+..|+++|.-+.-+|.++...-.- ..
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l---~d 199 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGL---KD 199 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCc---Cc
Confidence 5666789999999999999999999988754 1232 45678999999999999999999999988654210 12
Q ss_pred chHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 017532 250 SEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD------YNDIVAINNKALCLMYLRDLSDSIKVLENALERVP 321 (370)
Q Consensus 250 ~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~------p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p 321 (370)
.+...+..+.+.++..+..+|+..+|.++.+++.++. +-......-+|.+|...|+.+.|..-|+.|+....
T Consensus 200 ~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~ 277 (518)
T KOG1941|consen 200 WSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMA 277 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHh
Confidence 2333457778889999999999999999999997762 33445667789999999999999999999987643
No 187
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=3.4e-05 Score=65.97 Aligned_cols=113 Identities=14% Similarity=0.160 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH------HHHHHHhHHHHHHHcCCHHHHHHHHHHHH
Q 017532 210 ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF------RNLVSRNKALIYLVGKDYVSAVREYEECI 283 (370)
Q Consensus 210 ~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~------~~~~~~~~g~~~~~~g~~~eA~~~~~~~l 283 (370)
.++..-|+-++..|++.+|...|..|+-...+-.. ...+.+|++ ..-.+.|.+.|+...|+|-++++....++
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~l-kEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQL-KEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHh-ccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 34455566677777777777777776543322100 001334433 24567889999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 284 ERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 284 ~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
..+|.|..+|+.+|.+....-+.++|...|.++++++|..
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 9999999999999999999999999999999999999975
No 188
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.27 E-value=8.7e-07 Score=52.38 Aligned_cols=34 Identities=29% Similarity=0.312 Sum_probs=31.9
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 017532 278 EYEECIERDYNDIVAINNKALCLMYLRDLSDSIK 311 (370)
Q Consensus 278 ~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~ 311 (370)
+|+++|+++|+++.+|+|+|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4889999999999999999999999999999974
No 189
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.23 E-value=8.6e-06 Score=68.35 Aligned_cols=102 Identities=15% Similarity=0.121 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017532 209 PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYN 288 (370)
Q Consensus 209 ~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~ 288 (370)
+..++..|..|-..|=..-|.-.|.+++.+.| .. ..+.+.+|..+...|+|+.|.+.|..++++||.
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P------------~m-~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~ 131 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRP------------DM-PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 131 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCC------------Cc-HHHHHHHHHHHHhcccchHHHHHhhhHhccCCc
Confidence 45566678888888888899999999996544 33 566788999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 289 DIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 289 ~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
+--+..|+|+.+++-|++.-|.+.+.+-.+.+|++
T Consensus 132 y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~D 166 (297)
T COG4785 132 YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPND 166 (297)
T ss_pred chHHHhccceeeeecCchHhhHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999985
No 190
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.21 E-value=0.00014 Score=70.53 Aligned_cols=125 Identities=16% Similarity=0.142 Sum_probs=104.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHH
Q 017532 187 SKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIY 266 (370)
Q Consensus 187 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~ 266 (370)
..+.+.|..+++...+..| +..-.+...|+++...|++++|++.|++++... ..-+.+....+..+|.++
T Consensus 246 ~~~~~~a~~lL~~~~~~yP-~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q---------~~~~Ql~~l~~~El~w~~ 315 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYP-NSALFLFFEGRLERLKGNLEEAIESFERAIESQ---------SEWKQLHHLCYFELAWCH 315 (468)
T ss_pred CCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCHHHHHHHHHHhccch---------hhHHhHHHHHHHHHHHHH
Confidence 4677889999999999999 888888888999999999999999999988421 223445567788999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHhCCH-------HHHHHHHHHHHHhCC
Q 017532 267 LVGKDYVSAVREYEECIERDYNDI-VAINNKALCLMYLRDL-------SDSIKVLENALERVP 321 (370)
Q Consensus 267 ~~~g~~~eA~~~~~~~l~~~p~~~-~~~~nla~~~~~~g~~-------~~A~~~l~~al~~~p 321 (370)
+.+.+|++|.++|.+.++.+.... ...+..|.|+...|+. ++|.+.+.++-....
T Consensus 316 ~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 316 MFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 999999999999999999876543 4556778999999999 999999988876544
No 191
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.20 E-value=5.1e-05 Score=71.31 Aligned_cols=111 Identities=18% Similarity=0.162 Sum_probs=96.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 017532 213 SKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVA 292 (370)
Q Consensus 213 ~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~ 292 (370)
-.|-......++++.|+..|++..+ .+|+. ...++.+++..++..+|+..+.+++..+|.+...
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~------------~~pev----~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~L 236 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRE------------RDPEV----AVLLARVYLLMNEEVEAIRLLNEALKENPQDSEL 236 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHh------------cCCcH----HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHH
Confidence 3445566667899999999999883 34543 3448899999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccC
Q 017532 293 INNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYV 342 (370)
Q Consensus 293 ~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~ 342 (370)
+...|..++..++++.|++..++++...|+. -..++.|+.+|....+
T Consensus 237 L~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~---f~~W~~La~~Yi~~~d 283 (395)
T PF09295_consen 237 LNLQAEFLLSKKKYELALEIAKKAVELSPSE---FETWYQLAECYIQLGD 283 (395)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCchh---HHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999997 7899999999985444
No 192
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.16 E-value=0.00026 Score=58.28 Aligned_cols=125 Identities=11% Similarity=0.003 Sum_probs=97.3
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHH
Q 017532 185 LSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKAL 264 (370)
Q Consensus 185 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~ 264 (370)
.++=|.+.+..-..+.+...| ...-.+.||......|++.+|..+|++++.- .. ..++ .....++.
T Consensus 67 ~q~ldP~R~~Rea~~~~~~Ap--Tvqnr~rLa~al~elGr~~EA~~hy~qalsG---~f-----A~d~----a~lLglA~ 132 (251)
T COG4700 67 QQKLDPERHLREATEELAIAP--TVQNRYRLANALAELGRYHEAVPHYQQALSG---IF-----AHDA----AMLLGLAQ 132 (251)
T ss_pred HHhcChhHHHHHHHHHHhhch--hHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc---cc-----CCCH----HHHHHHHH
Confidence 334455555555555555555 2445688899999999999999999999841 10 2333 44677899
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 265 IYLVGKDYVSAVREYEECIERDYN--DIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 265 ~~~~~g~~~eA~~~~~~~l~~~p~--~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
..+..+++.+|...+++..+.+|. .+.....+|.++...|++.+|...|+.++...|++
T Consensus 133 Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~ 193 (251)
T COG4700 133 AQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP 193 (251)
T ss_pred HHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH
Confidence 999999999999999999999875 34556667889999999999999999999999986
No 193
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=0.001 Score=56.71 Aligned_cols=142 Identities=14% Similarity=0.096 Sum_probs=103.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhhcCCccCCccch
Q 017532 179 CLIGYHLSSKEYNVCFDLMNESIGRGNGLD------PILVSKLGFIQMQV-GDLEGAKKSFNRVEEMLNEGKFEDGLLSE 251 (370)
Q Consensus 179 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~------~~~~~~lg~~~~~~-g~~~~A~~~~~~a~~l~~~~~~~~~~~~~ 251 (370)
.-+.-.++.++.++|+..+++++++.. +- ......+|.+|..- .++++|+.+|+++-+-....+. ...
T Consensus 78 veA~~cykk~~~~eAv~cL~~aieIyt-~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees----~ss 152 (288)
T KOG1586|consen 78 VEAANCYKKVDPEEAVNCLEKAIEIYT-DMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEES----VSS 152 (288)
T ss_pred HHHHHHhhccChHHHHHHHHHHHHHHH-hhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhh----hhh
Confidence 333444566799999999999998876 22 23345788888765 8999999999999876554311 111
Q ss_pred HHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-------HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcc
Q 017532 252 VEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIV-------AINNKALCLMYLRDLSDSIKVLENALERVPTVA 324 (370)
Q Consensus 252 p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~-------~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~ 324 (370)
. .....-.+...-..|+|.+|+..|+++....-++.. .+..-|.|++-..+.--+...+++-.+++|.++
T Consensus 153 A---NKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 153 A---NKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFT 229 (288)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccc
Confidence 1 222333566667789999999999999877655543 345668888888999999999999999999986
Q ss_pred hhHH
Q 017532 325 LNET 328 (370)
Q Consensus 325 ~~~~ 328 (370)
....
T Consensus 230 dsRE 233 (288)
T KOG1586|consen 230 DSRE 233 (288)
T ss_pred ccHH
Confidence 4443
No 194
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.14 E-value=0.00052 Score=57.00 Aligned_cols=129 Identities=14% Similarity=0.107 Sum_probs=95.1
Q ss_pred HHHHHHHHHHhCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHc
Q 017532 192 VCFDLMNESIGRGNGLDPI--LVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVG 269 (370)
Q Consensus 192 ~A~~~~~~~l~~~~~~~~~--~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~ 269 (370)
+.+...++.+..++..... +...++..+...|++++|+..++.++.. ..|.++...+...+|.+.+.+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----------t~De~lk~l~~lRLArvq~q~ 139 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----------TKDENLKALAALRLARVQLQQ 139 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----------chhHHHHHHHHHHHHHHHHHh
Confidence 5666666666666523332 2356788899999999999999999832 456666677788899999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHH
Q 017532 270 KDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVV 331 (370)
Q Consensus 270 g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~ 331 (370)
|++++|+..+....+. .-.+.....+|.++...|+-++|++.|++++..++++...+.+-+
T Consensus 140 ~k~D~AL~~L~t~~~~-~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~~~~~lqm 200 (207)
T COG2976 140 KKADAALKTLDTIKEE-SWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPAAREILQM 200 (207)
T ss_pred hhHHHHHHHHhccccc-cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChHHHHHHHh
Confidence 9999999888765321 112345667899999999999999999999999876543333333
No 195
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.13 E-value=0.0027 Score=61.61 Aligned_cols=182 Identities=12% Similarity=-0.034 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccc
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGL---DPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLS 250 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~ 250 (370)
...+..+|..|-..|+.+.|..+++++.+..-.. -...|..-|..-++..+++.|.+..++|..+........-...
T Consensus 387 ~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~ 466 (835)
T KOG2047|consen 387 GTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNS 466 (835)
T ss_pred hhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCC
Confidence 3556678888888888888888888887754411 1355666677777778888888888887654222110000001
Q ss_pred hHHH-----HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcch
Q 017532 251 EVEF-----RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVAL 325 (370)
Q Consensus 251 ~p~~-----~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~ 325 (370)
.|.. -..+|...+..--..|=++.-...|++++++.--.|....|.|..+....-++++.+.|++.|.+.+-+..
T Consensus 467 ~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v 546 (835)
T KOG2047|consen 467 EPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNV 546 (835)
T ss_pred CcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccH
Confidence 1111 13455556666667777777788888888887777888888888888888888888888888888765433
Q ss_pred hHHHHHHHHHHHHhccCCchhhHHHHHHHH
Q 017532 326 NETLVVNLCSMYELAYVNHSDIKRTLSSWI 355 (370)
Q Consensus 326 ~~~~~~nl~~lyel~~~~~~~~~~~ll~~~ 355 (370)
.+-..-.|.....=.+..+.+..+.|.++.
T Consensus 547 ~diW~tYLtkfi~rygg~klEraRdLFEqa 576 (835)
T KOG2047|consen 547 YDIWNTYLTKFIKRYGGTKLERARDLFEQA 576 (835)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 222222222222222334446677776654
No 196
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.09 E-value=0.00044 Score=62.57 Aligned_cols=200 Identities=17% Similarity=0.146 Sum_probs=133.6
Q ss_pred cchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 017532 118 VPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLM 197 (370)
Q Consensus 118 ~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 197 (370)
.++...+..+..+..++.++++++.|+.+++..... .+ ...+ -+++-.++..+-+.+|+++|..+.
T Consensus 120 ~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~-----~D---~~LE------lqvcv~Lgslf~~l~D~~Kal~f~ 185 (518)
T KOG1941|consen 120 LGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNN-----DD---AMLE------LQVCVSLGSLFAQLKDYEKALFFP 185 (518)
T ss_pred ccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhcc-----CC---ceee------eehhhhHHHHHHHHHhhhHHhhhh
Confidence 344444444444556666677777666655433221 00 0011 257778999999999999999999
Q ss_pred HHHHhCCC---CC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHH
Q 017532 198 NESIGRGN---GL------DPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLV 268 (370)
Q Consensus 198 ~~~l~~~~---~~------~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~ 268 (370)
.++.++-. -. ...+++.++-.+...|.+-+|.++.+++.++.-.. ...+.. +.....+|.+|..
T Consensus 186 ~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~------Gdra~~-arc~~~~aDIyR~ 258 (518)
T KOG1941|consen 186 CKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQH------GDRALQ-ARCLLCFADIYRS 258 (518)
T ss_pred HhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh------CChHHH-HHHHHHHHHHHHh
Confidence 88876543 01 22456788888899999999999999998875432 223333 6777789999999
Q ss_pred cCCHHHHHHHHHHHHhhC--CC----CHHHHHHHHHHHHHhCCHHH-----HHHHHHHHHHhCCCcc---hhHHHHHHHH
Q 017532 269 GKDYVSAVREYEECIERD--YN----DIVAINNKALCLMYLRDLSD-----SIKVLENALERVPTVA---LNETLVVNLC 334 (370)
Q Consensus 269 ~g~~~eA~~~~~~~l~~~--p~----~~~~~~nla~~~~~~g~~~~-----A~~~l~~al~~~p~~~---~~~~~~~nl~ 334 (370)
.|+.+.|..-|+++.... -. ...++...|.|+....-..+ |++.-+++++.....- .--.....++
T Consensus 259 ~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla 338 (518)
T KOG1941|consen 259 RGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLA 338 (518)
T ss_pred cccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 999999999999997653 12 23456666777766655555 8888888877643321 1234456777
Q ss_pred HHHH
Q 017532 335 SMYE 338 (370)
Q Consensus 335 ~lye 338 (370)
.+|.
T Consensus 339 ~iYr 342 (518)
T KOG1941|consen 339 SIYR 342 (518)
T ss_pred HHHH
Confidence 8884
No 197
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=0.00067 Score=60.00 Aligned_cols=148 Identities=11% Similarity=0.049 Sum_probs=106.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHH
Q 017532 180 LIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVS 259 (370)
Q Consensus 180 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~ 259 (370)
-+.-....|++.+|...+..++...| .+..+...++.++...|+.+.|...+...-.- ..+... ...
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~----------~~~~~~--~~l 206 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALPLQ----------AQDKAA--HGL 206 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCccc----------chhhHH--HHH
Confidence 34456678999999999999999999 88889999999999999999999998775311 111111 111
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHh
Q 017532 260 RNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYEL 339 (370)
Q Consensus 260 ~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel 339 (370)
...-..+.......+ +..+++.+..+|+|..+.+.+|..+...|+.++|.+.+-..++.+-.. ....+.-.|-.++++
T Consensus 207 ~a~i~ll~qaa~~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~-~d~~~Rk~lle~f~~ 284 (304)
T COG3118 207 QAQIELLEQAAATPE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF-EDGEARKTLLELFEA 284 (304)
T ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-cCcHHHHHHHHHHHh
Confidence 011122223333333 244677788899999999999999999999999999999999987654 224455555555555
Q ss_pred ccC
Q 017532 340 AYV 342 (370)
Q Consensus 340 ~~~ 342 (370)
...
T Consensus 285 ~g~ 287 (304)
T COG3118 285 FGP 287 (304)
T ss_pred cCC
Confidence 544
No 198
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.04 E-value=1.4e-05 Score=50.37 Aligned_cols=41 Identities=20% Similarity=-0.059 Sum_probs=33.6
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 017532 258 VSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKAL 298 (370)
Q Consensus 258 ~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~ 298 (370)
++..+|..+...|++++|+..|+++++.+|+++.++..+|.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 45668888888888888888888888888888888887764
No 199
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.01 E-value=4.6e-05 Score=62.48 Aligned_cols=86 Identities=16% Similarity=0.028 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHc----------CCHHHHHHHHHHHHhhCCCCHHHHH
Q 017532 225 LEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVG----------KDYVSAVREYEECIERDYNDIVAIN 294 (370)
Q Consensus 225 ~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~----------g~~~eA~~~~~~~l~~~p~~~~~~~ 294 (370)
++.|.+.++...... |.. .+.+++-|..+..+ .-+++|+.-|++++.++|+...+++
T Consensus 7 FE~ark~aea~y~~n------------P~D-adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw 73 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN------------PLD-ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALW 73 (186)
T ss_dssp HHHHHHHHHHHHHH-------------TT--HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHH
T ss_pred HHHHHHHHHHHHHhC------------cHh-HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 466777777666432 222 44455556665554 3467889999999999999999999
Q ss_pred HHHHHHHHhCC-----------HHHHHHHHHHHHHhCCCc
Q 017532 295 NKALCLMYLRD-----------LSDSIKVLENALERVPTV 323 (370)
Q Consensus 295 nla~~~~~~g~-----------~~~A~~~l~~al~~~p~~ 323 (370)
++|.++...+. |++|..+|++|+..+|++
T Consensus 74 ~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 74 CLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 99999977665 889999999999999986
No 200
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=1.2e-05 Score=68.45 Aligned_cols=92 Identities=18% Similarity=0.140 Sum_probs=81.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 017532 215 LGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAIN 294 (370)
Q Consensus 215 lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~ 294 (370)
-|..++.-.+|+.|+.+|.+++.+ +|.. ..-+.+.+.|+++.++++.+....+++++++|+.....+
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~------------nP~~-~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~ 82 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICI------------NPTV-ASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHY 82 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhc------------CCCc-chhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHH
Confidence 366677778899999999999954 4444 556788999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 295 NKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 295 nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
.+|.+++.+..+++||..+.++..+
T Consensus 83 flg~~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 83 FLGQWLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHH
Confidence 9999999999999999999999655
No 201
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=0.0001 Score=65.84 Aligned_cols=102 Identities=16% Similarity=0.188 Sum_probs=91.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 017532 212 VSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIV 291 (370)
Q Consensus 212 ~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~ 291 (370)
+-.-|+-|+...+|..|+.+|.+.+... ..+|++.+..|.|++-+.+..|+|-.|++.+.+++.++|.+..
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~k---------c~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~K 154 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKK---------CADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLK 154 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhc---------CCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Confidence 3445899999999999999999999631 3467766888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 292 AINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 292 ~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
+++.-|.|++.+.++++|+..++..+..+-+
T Consensus 155 a~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 155 AYIRGAKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 9999999999999999999999998877654
No 202
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.99 E-value=0.001 Score=64.47 Aligned_cols=183 Identities=16% Similarity=0.153 Sum_probs=129.3
Q ss_pred HHcCcccCCccchHHHHHHHHHHHHHHHHHH--------------hhHhhHHhHHHHHHHH----------HHHHHHHHH
Q 017532 127 AVLPIKLSNRQVGLDRFYELLDFVREKLARK--------------LAEKLEESVKSWKKRE----------IFVLNCLIG 182 (370)
Q Consensus 127 a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~--------------~~~~~~~~~~~~~~~~----------~~~~~~la~ 182 (370)
.++....|++.+-+..+.+++....+..... ..+..+.+-.+|.+.. +.++..-|+
T Consensus 354 kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~wae 433 (835)
T KOG2047|consen 354 KRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAE 433 (835)
T ss_pred hhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHH
Confidence 3445666777777777777665443322110 1233445555665543 567778888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCC-----------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCcc
Q 017532 183 YHLSSKEYNVCFDLMNESIGRGNG-----------------LDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFE 245 (370)
Q Consensus 183 ~~~~~g~~~~A~~~~~~~l~~~~~-----------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~ 245 (370)
.-++..+++.|+.+++++...... .+..+|+..+......|-++.....|++++.+.-
T Consensus 434 mElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri----- 508 (835)
T KOG2047|consen 434 MELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI----- 508 (835)
T ss_pred HHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc-----
Confidence 888899999999999999754321 1235667777777888999999999999997632
Q ss_pred CCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHH---HHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 017532 246 DGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDY--NDIVA---INNKALCLMYLRDLSDSIKVLENALERV 320 (370)
Q Consensus 246 ~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p--~~~~~---~~nla~~~~~~g~~~~A~~~l~~al~~~ 320 (370)
..|. +.+|.|+.+-....+++|.+.|++.+.+.+ +.... |....+.-+..-+++.|...|+++++..
T Consensus 509 ----aTPq----ii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~C 580 (835)
T KOG2047|consen 509 ----ATPQ----IIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGC 580 (835)
T ss_pred ----CCHH----HHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence 3453 467889999999999999999999999863 33334 4444555556678999999999999988
Q ss_pred CC
Q 017532 321 PT 322 (370)
Q Consensus 321 p~ 322 (370)
|.
T Consensus 581 pp 582 (835)
T KOG2047|consen 581 PP 582 (835)
T ss_pred CH
Confidence 83
No 203
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.96 E-value=0.0026 Score=53.97 Aligned_cols=149 Identities=20% Similarity=0.174 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIG--RGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEV 252 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p 252 (370)
......+..+...+++..+...+..... ..+ .....+...|..+...+++..++..+.++....+..
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 128 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLP-NLAEALLNLGLLLEALGKYEEALELLEKALALDPDP---------- 128 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc----------
Confidence 3445666778888999999999999987 566 777888999999999999999999999998543321
Q ss_pred HHHHHHHHhHHH-HHHHcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-cchhH
Q 017532 253 EFRNLVSRNKAL-IYLVGKDYVSAVREYEECIERDY---NDIVAINNKALCLMYLRDLSDSIKVLENALERVPT-VALNE 327 (370)
Q Consensus 253 ~~~~~~~~~~g~-~~~~~g~~~eA~~~~~~~l~~~p---~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~-~~~~~ 327 (370)
.......+. ++...|++++|...|++++..+| .....+...+..+...+++++|+..+.+++...+. . .
T Consensus 129 ---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~ 202 (291)
T COG0457 129 ---DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDD---A 202 (291)
T ss_pred ---chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccc---h
Confidence 111222444 89999999999999999988777 45567777777788999999999999999999987 4 5
Q ss_pred HHHHHHHHHHHhc
Q 017532 328 TLVVNLCSMYELA 340 (370)
Q Consensus 328 ~~~~nl~~lyel~ 340 (370)
....+++..|...
T Consensus 203 ~~~~~~~~~~~~~ 215 (291)
T COG0457 203 EALLNLGLLYLKL 215 (291)
T ss_pred HHHHHhhHHHHHc
Confidence 6677777777643
No 204
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.96 E-value=0.00023 Score=70.51 Aligned_cols=131 Identities=18% Similarity=0.098 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH------HHHHhhcCCccCC
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNR------VEEMLNEGKFEDG 247 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~------a~~l~~~~~~~~~ 247 (370)
++-++.+..+++-+|+.++|-.+-++. .+-.+-|.||+.|...|++.+|+.+|.+ |+++++.+..
T Consensus 938 A~D~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~--- 1008 (1416)
T KOG3617|consen 938 AKDYFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDM--- 1008 (1416)
T ss_pred hhhhhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCH---
Confidence 345677778888889999998887764 7778889999999999999999999887 4666666532
Q ss_pred ccchHHHHHHH-------HHhHHHHHHHcC-CHHHHHHHHHHH------Hh-----------------hCC-CCHHHHHH
Q 017532 248 LLSEVEFRNLV-------SRNKALIYLVGK-DYVSAVREYEEC------IE-----------------RDY-NDIVAINN 295 (370)
Q Consensus 248 ~~~~p~~~~~~-------~~~~g~~~~~~g-~~~eA~~~~~~~------l~-----------------~~p-~~~~~~~n 295 (370)
+..+...+ ...-+..|-..| +++.|+..|.++ ++ ++| .|+..++.
T Consensus 1009 ---~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~R 1085 (1416)
T KOG3617|consen 1009 ---KDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRR 1085 (1416)
T ss_pred ---HHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHH
Confidence 00000000 011122233333 445555544443 11 133 47788888
Q ss_pred HHHHHHHhCCHHHHHHHHHHH
Q 017532 296 KALCLMYLRDLSDSIKVLENA 316 (370)
Q Consensus 296 la~~~~~~g~~~~A~~~l~~a 316 (370)
.+.-+....+|++|+..+-.+
T Consensus 1086 cadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1086 CADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred HHHHHHhHHHHHHHHHHHHHH
Confidence 888888889999998876544
No 205
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.94 E-value=1.7e-05 Score=46.84 Aligned_cols=31 Identities=26% Similarity=0.310 Sum_probs=16.8
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017532 258 VSRNKALIYLVGKDYVSAVREYEECIERDYN 288 (370)
Q Consensus 258 ~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~ 288 (370)
+|.++|.+++.+|++++|+..|+++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 3455555555555555555555555555554
No 206
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.94 E-value=6.7e-05 Score=61.51 Aligned_cols=109 Identities=9% Similarity=0.107 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHH
Q 017532 190 YNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGD----------LEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVS 259 (370)
Q Consensus 190 ~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~ 259 (370)
|+.|.+.++.....+| .+++.+++-|.+++.+.+ +++|++-|++|+.+ +|+. ..++
T Consensus 7 FE~ark~aea~y~~nP-~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I------------~P~~-hdAl 72 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNP-LDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI------------NPNK-HDAL 72 (186)
T ss_dssp HHHHHHHHHHHHHH-T-T-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-------------TT--HHHH
T ss_pred HHHHHHHHHHHHHhCc-HhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc------------CCch-HHHH
Confidence 6788899999999999 999999888888876543 34566666667755 4444 6777
Q ss_pred HhHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 260 RNKALIYLVGKD-----------YVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 260 ~~~g~~~~~~g~-----------~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
.++|.++...+. |++|.++|+++...+|++......|-.+ .+|-+...++.+.
T Consensus 73 w~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~-------~kap~lh~e~~~~ 136 (186)
T PF06552_consen 73 WCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA-------AKAPELHMEIHKQ 136 (186)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH-------HTHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH-------HhhHHHHHHHHHH
Confidence 788888877654 8889999999999999988766655544 2455555554443
No 207
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.93 E-value=0.017 Score=53.18 Aligned_cols=254 Identities=12% Similarity=0.030 Sum_probs=162.6
Q ss_pred HHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCccc
Q 017532 39 ATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMV 118 (370)
Q Consensus 39 ~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 118 (370)
.-.|+|+.|-+.|+.|++ +|.-.+.-+...-..--++|..+-|...-...-... ...
T Consensus 131 l~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A------------------p~l 187 (531)
T COG3898 131 LLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA------------------PQL 187 (531)
T ss_pred HhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc------------------cCC
Confidence 345788888877777653 454323222221122335666666666555542111 125
Q ss_pred chhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 017532 119 PFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMN 198 (370)
Q Consensus 119 ~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 198 (370)
+|..+.+.... +..|+++.|+..+..... ...+.....+ ...+..+...+..++ .-+...|...-.
T Consensus 188 ~WA~~AtLe~r-~~~gdWd~AlkLvd~~~~--~~vie~~~ae----------R~rAvLLtAkA~s~l-dadp~~Ar~~A~ 253 (531)
T COG3898 188 PWAARATLEAR-CAAGDWDGALKLVDAQRA--AKVIEKDVAE----------RSRAVLLTAKAMSLL-DADPASARDDAL 253 (531)
T ss_pred chHHHHHHHHH-HhcCChHHHHHHHHHHHH--HHhhchhhHH----------HHHHHHHHHHHHHHh-cCChHHHHHHHH
Confidence 66666554433 677888888877765321 1111111000 011122222333333 356889999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHH
Q 017532 199 ESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVRE 278 (370)
Q Consensus 199 ~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~ 278 (370)
+++++.| +....-..-++.++..|++.++-+.++.+.+. .-+|++ . ...++.+.|+. ++.-
T Consensus 254 ~a~KL~p-dlvPaav~AAralf~d~~~rKg~~ilE~aWK~----------ePHP~i-a-----~lY~~ar~gdt--a~dR 314 (531)
T COG3898 254 EANKLAP-DLVPAAVVAARALFRDGNLRKGSKILETAWKA----------EPHPDI-A-----LLYVRARSGDT--ALDR 314 (531)
T ss_pred HHhhcCC-ccchHHHHHHHHHHhccchhhhhhHHHHHHhc----------CCChHH-H-----HHHHHhcCCCc--HHHH
Confidence 9999999 87777777799999999999999999999964 234544 2 23344555554 4444
Q ss_pred HHH---HHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHH
Q 017532 279 YEE---CIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSS 353 (370)
Q Consensus 279 ~~~---~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~ 353 (370)
+++ ...+.|++.......+.+.+..|++..|..--+.+....|. +++..-|+.+-|-.+. +..+-+.++.
T Consensus 315 lkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr----es~~lLlAdIeeAetG-Dqg~vR~wlA 387 (531)
T COG3898 315 LKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR----ESAYLLLADIEEAETG-DQGKVRQWLA 387 (531)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch----hhHHHHHHHHHhhccC-chHHHHHHHH
Confidence 444 44567999999999999999999999999999999999997 7888889999885433 3344444443
No 208
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.87 E-value=0.0028 Score=55.21 Aligned_cols=185 Identities=15% Similarity=0.110 Sum_probs=115.6
Q ss_pred ChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHH--HHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCC
Q 017532 31 DLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHH--LTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPH 108 (370)
Q Consensus 31 ~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~--~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~ 108 (370)
-...+...++.|+|.+|++.++.+..+ .|.++ .......+.++.+.+.+++|...+++...+.
T Consensus 37 LY~~g~~~L~~gn~~~A~~~fe~l~~~----~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly----------- 101 (254)
T COG4105 37 LYNEGLTELQKGNYEEAIKYFEALDSR----HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY----------- 101 (254)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-----------
Confidence 456888999999999999999997543 45432 2233445889999999999999998886543
Q ss_pred CCCCCCCcccchhHHHHHHHcCcc--c---CCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHH
Q 017532 109 IYPNRTGSMVPFSLRWLYAVLPIK--L---SNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGY 183 (370)
Q Consensus 109 ~~~~~~~~~~~~~~r~l~a~~~~~--~---g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 183 (370)
|..+...=.+.++.+.-..... . ....+|+..+.+++...+.- .... ....-+.....+++.--..+|..
T Consensus 102 --P~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS--~Ya~-dA~~~i~~~~d~LA~~Em~Iary 176 (254)
T COG4105 102 --PTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNS--RYAP-DAKARIVKLNDALAGHEMAIARY 176 (254)
T ss_pred --CCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCC--cchh-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222223444433211111 1 11233444444444332210 0000 01112233334444445578899
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 017532 184 HLSSKEYNVCFDLMNESIGRGNG--LDPILVSKLGFIQMQVGDLEGAKKSFNRV 235 (370)
Q Consensus 184 ~~~~g~~~~A~~~~~~~l~~~~~--~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 235 (370)
|.+.|.|..|+.-++.+++..|. .-..++..+..+|..+|-.++|.+.-.-.
T Consensus 177 Y~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 177 YLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 99999999999999999999872 23467888899999999999887765433
No 209
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.86 E-value=3.5e-05 Score=45.44 Aligned_cols=33 Identities=24% Similarity=0.267 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 290 IVAINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 290 ~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
+.+|+++|.++..+|++++|+..|+++++++|+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 368999999999999999999999999999996
No 210
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.86 E-value=3.9e-05 Score=45.13 Aligned_cols=32 Identities=22% Similarity=0.253 Sum_probs=20.1
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 017532 258 VSRNKALIYLVGKDYVSAVREYEECIERDYND 289 (370)
Q Consensus 258 ~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~ 289 (370)
++..+|.+++..|++++|+++|+++++++|+|
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45556666666666666666666666666654
No 211
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.86 E-value=0.016 Score=54.66 Aligned_cols=244 Identities=16% Similarity=0.151 Sum_probs=156.0
Q ss_pred CCCCcCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHH------HHHHHH--HHHhhhcCHHHHHHHhhhcCC
Q 017532 24 SLNDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLT------YLAYNT--LALMKLRRFDEAQQELDSLED 95 (370)
Q Consensus 24 ~~~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~------~~~~~~--~al~~l~~~~~A~~~~~~~~~ 95 (370)
||.|-+.=..-++..-..|+-+..-+.|++++.. ..|.+.-. ++|++- ..=+-....+.+..+++...+
T Consensus 318 np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan---vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~ 394 (677)
T KOG1915|consen 318 NPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN---VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD 394 (677)
T ss_pred CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc---CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 5556555555566666779999999999998643 24543222 222221 223456788888888888877
Q ss_pred CCCCCCcccccCCCCCCCCCcccchh-HHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHH
Q 017532 96 FNSSGYQYETYPHIYPNRTGSMVPFS-LRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREI 174 (370)
Q Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~~~-~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (370)
+.+ .+. ..|+ +.++.|....+.-+...|-..+=.++..|+.. ++++
T Consensus 395 lIP-------------Hkk---FtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-------------KlFk---- 441 (677)
T KOG1915|consen 395 LIP-------------HKK---FTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-------------KLFK---- 441 (677)
T ss_pred hcC-------------ccc---chHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-------------hHHH----
Confidence 653 111 1121 12333433333344444433333333333321 1111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
....+-++.++++....+|++-+.-+| .+..+|..-|.+-..+||.|.|...|+-|++. .....|.+
T Consensus 442 ----~YIelElqL~efDRcRkLYEkfle~~P-e~c~~W~kyaElE~~LgdtdRaRaifelAi~q--------p~ldmpel 508 (677)
T KOG1915|consen 442 ----GYIELELQLREFDRCRKLYEKFLEFSP-ENCYAWSKYAELETSLGDTDRARAIFELAISQ--------PALDMPEL 508 (677)
T ss_pred ----HHHHHHHHHhhHHHHHHHHHHHHhcCh-HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcC--------cccccHHH
Confidence 223455567999999999999999999 99999999999999999999999999999842 11345654
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-----HhC-----------CHHHHHHHHHHHHH
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLM-----YLR-----------DLSDSIKVLENALE 318 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~-----~~g-----------~~~~A~~~l~~al~ 318 (370)
.|...-.--+..|.++.|...|++.++..+... +|...|.--. ..| ....|..+|++|..
T Consensus 509 ---lwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 509 ---LWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred ---HHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 233333344578999999999999999987655 6655554332 344 56788888988876
Q ss_pred hC
Q 017532 319 RV 320 (370)
Q Consensus 319 ~~ 320 (370)
..
T Consensus 585 ~~ 586 (677)
T KOG1915|consen 585 YL 586 (677)
T ss_pred HH
Confidence 53
No 212
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.84 E-value=0.00027 Score=58.62 Aligned_cols=99 Identities=16% Similarity=0.230 Sum_probs=79.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 177 LNCLIGYHLSSKEYNVCFDLMNESIGRGNGLD---PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 177 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
...++..+...+++++|+..++.++.... +. ..+-.+|+++..+.|.+|+|.+.++... ++.
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~-De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~--------------~~~ 156 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTK-DENLKALAALRLARVQLQQKKADAALKTLDTIK--------------EES 156 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccch-hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc--------------ccc
Confidence 34677888999999999999999987554 22 2344789999999999999999998775 233
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI 290 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~ 290 (370)
+.......+|.++...|+-++|+..|+++++.+++.+
T Consensus 157 w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 157 WAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 3244455689999999999999999999999975543
No 213
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.81 E-value=0.0056 Score=64.32 Aligned_cols=224 Identities=10% Similarity=0.007 Sum_probs=156.9
Q ss_pred CCCCcCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchH--HHHHHHHH-HHHHhhhcCHHHHHHHhhhcCCCCCCC
Q 017532 24 SLNDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHH--HLTYLAYN-TLALMKLRRFDEAQQELDSLEDFNSSG 100 (370)
Q Consensus 24 ~~~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~--~~~~~~~~-~~al~~l~~~~~A~~~~~~~~~l~~~~ 100 (370)
+|+.--.-.+=+.-.++.+..++|-+.++++...+ |+.. .....|+. +.....-|--+...+.|.++-.-
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tI---N~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---- 1526 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTI---NFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---- 1526 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhC---CcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh----
Confidence 66666666677888999999999999999987653 4432 22222221 11112223333444445544211
Q ss_pred CcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHH
Q 017532 101 YQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCL 180 (370)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 180 (370)
+.|.....-+..++...+..++|.+.+..+++.+++. .+.| ...
T Consensus 1527 ----------------cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~------------~~vW--------~~y 1570 (1710)
T KOG1070|consen 1527 ----------------CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQT------------RKVW--------IMY 1570 (1710)
T ss_pred ----------------cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcch------------hhHH--------HHH
Confidence 0111112222344455677788888887777666532 2344 467
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHH
Q 017532 181 IGYHLSSKEYNVCFDLMNESIGRGN-GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVS 259 (370)
Q Consensus 181 a~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~ 259 (370)
+..+++..+-+.|..++.++++--| ..+.......+.+-++.||.+.+...|+-.+.- +|.. .+.|
T Consensus 1571 ~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a------------yPKR-tDlW 1637 (1710)
T KOG1070|consen 1571 ADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA------------YPKR-TDLW 1637 (1710)
T ss_pred HHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh------------Cccc-hhHH
Confidence 7888999999999999999999888 247888999999999999999999999999953 3333 7778
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHh
Q 017532 260 RNKALIYLVGKDYVSAVREYEECIERD--YNDIVAINNKALCLMYL 303 (370)
Q Consensus 260 ~~~g~~~~~~g~~~eA~~~~~~~l~~~--p~~~~~~~nla~~~~~~ 303 (370)
+.....=++.|+.+.+...|++++.+. |.....++..-.-|.+.
T Consensus 1638 ~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~ 1683 (1710)
T KOG1070|consen 1638 SVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKS 1683 (1710)
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHh
Confidence 888888889999999999999999875 77777888887777765
No 214
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.80 E-value=0.0011 Score=53.69 Aligned_cols=64 Identities=20% Similarity=0.102 Sum_probs=54.6
Q ss_pred HHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 256 NLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
..+...++..+...|++++|+..+++++..+|.+..++..+..++...|+..+|++.|++....
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 3445557888899999999999999999999999999999999999999999999999987543
No 215
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.80 E-value=0.002 Score=53.94 Aligned_cols=106 Identities=13% Similarity=0.139 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccch
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGN--GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSE 251 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~ 251 (370)
...+..+|..|++.|+.+.|+..|.++..... ......+..+.++.+..|++.....+..++..+... ..+
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~-------~~d 108 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK-------GGD 108 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-------cch
Confidence 46778999999999999999999999877543 122356688889999999999999999999987665 234
Q ss_pred HHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017532 252 VEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD 286 (370)
Q Consensus 252 p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~ 286 (370)
++.+.......|..++..++|.+|.+.|-.++...
T Consensus 109 ~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 109 WERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 55445566668889999999999999988776443
No 216
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.79 E-value=0.032 Score=52.03 Aligned_cols=148 Identities=13% Similarity=-0.008 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HhhcCCc------
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNG---LDPILVSKLGFIQMQVGDLEGAKKSFNRVEE-MLNEGKF------ 244 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~---~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~-l~~~~~~------ 244 (370)
..+...+.+..+.|.++.|...+.++....+. ..+.....-+.+.+..|+..+|+..++..+. .......
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~ 226 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAE 226 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHH
Confidence 45667888899999999999999999886631 2466777889999999999999999988886 2221100
Q ss_pred -------------c-CCccchHHHHHHHHHhHHHHHHHc------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q 017532 245 -------------E-DGLLSEVEFRNLVSRNKALIYLVG------KDYVSAVREYEECIERDYNDIVAINNKALCLMYLR 304 (370)
Q Consensus 245 -------------~-~~~~~~p~~~~~~~~~~g~~~~~~------g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g 304 (370)
. ..........+.++..+|...... +..++++..|++++..+|....+++..|..+.+.=
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~ 306 (352)
T PF02259_consen 227 LKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLL 306 (352)
T ss_pred HhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHH
Confidence 0 001122233467777788877777 99999999999999999999999998887665432
Q ss_pred CH-----------------HHHHHHHHHHHHhCCC
Q 017532 305 DL-----------------SDSIKVLENALERVPT 322 (370)
Q Consensus 305 ~~-----------------~~A~~~l~~al~~~p~ 322 (370)
.. ..|+..|-+++...++
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 307 ESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 22 2366666666666665
No 217
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.78 E-value=6.8e-05 Score=47.16 Aligned_cols=42 Identities=19% Similarity=0.073 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Q 017532 291 VAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCS 335 (370)
Q Consensus 291 ~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~ 335 (370)
.++..+|.++..+|++++|++.|+++++.+|++ ..++..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~---~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDD---PEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC---HHHHHHhhh
Confidence 578899999999999999999999999999998 777777764
No 218
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.72 E-value=0.002 Score=58.29 Aligned_cols=134 Identities=13% Similarity=0.005 Sum_probs=104.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 176 VLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQ-VGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 176 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
++..+.....+.+..+.|..+|.++.+... ....+|...|.+-.+ .++.+.|.+.|+.+++..+.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~------------ 69 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD------------ 69 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-------------
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC------------
Confidence 445556667777789999999999986655 667888888999777 677777999999999766552
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI---VAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~---~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
...|......+...|+.+.|...|++++..-|... .+|.....--..-|+++...++.+++.+..|+.
T Consensus 70 -~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 70 -PDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred -HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 44566667788899999999999999998866555 577777777778899999999999999998874
No 219
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.71 E-value=0.0016 Score=64.77 Aligned_cols=119 Identities=16% Similarity=0.106 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH----------HhCCC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNES----------IGRGN---------GLDPILVSKLGFIQMQVGDLEGAKKSFNR 234 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~----------l~~~~---------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 234 (370)
..+|++.+..+...+|.+.|+++|+++ +..+| ..++.+|..-|.-....|+.|.|+.+|..
T Consensus 858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 567888888888999999999998875 33444 23556777778888888999999999988
Q ss_pred HHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 017532 235 VEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLE 314 (370)
Q Consensus 235 a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~ 314 (370)
|.. |+.+-.+.+.+|+.++|-.+-++ ..|..+-+.+|..|...|++.+|+..|.
T Consensus 938 A~D---------------------~fs~VrI~C~qGk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~FfT 991 (1416)
T KOG3617|consen 938 AKD---------------------YFSMVRIKCIQGKTDKAARIAEE-----SGDKAACYHLARMYENDGDVVKAVKFFT 991 (1416)
T ss_pred hhh---------------------hhhheeeEeeccCchHHHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 862 23344456677888888665544 4677788889999999999999998887
Q ss_pred HHHH
Q 017532 315 NALE 318 (370)
Q Consensus 315 ~al~ 318 (370)
+|-.
T Consensus 992 rAqa 995 (1416)
T KOG3617|consen 992 RAQA 995 (1416)
T ss_pred HHHH
Confidence 7643
No 220
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.69 E-value=0.0021 Score=60.85 Aligned_cols=128 Identities=10% Similarity=0.022 Sum_probs=97.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCcc------CCc------cchHH
Q 017532 186 SSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFE------DGL------LSEVE 253 (370)
Q Consensus 186 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~------~~~------~~~p~ 253 (370)
+..+.+.-++.-+++++++| +.+.++..|+. ....-..+|+.+|+++++..+..... .+. ..+.+
T Consensus 180 RERnp~aRIkaA~eALei~p-dCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~ 256 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEINP-DCADAYILLAE--EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTN 256 (539)
T ss_pred hcCCHHHHHHHHHHHHHhhh-hhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccc
Confidence 34788888999999999999 88888877664 12344788999999988765543210 000 00111
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERDYN--DIVAINNKALCLMYLRDLSDSIKVLENA 316 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~--~~~~~~nla~~~~~~g~~~~A~~~l~~a 316 (370)
....+...+|+|..+.|+.+||++.|+.+++..|. +..++.|+..+++..+++.++...+.+-
T Consensus 257 ~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 257 VLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred hhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 11445566899999999999999999999988775 4579999999999999999999999885
No 221
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.68 E-value=0.00012 Score=42.90 Aligned_cols=34 Identities=24% Similarity=0.208 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 290 IVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 290 ~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
+.+++.+|.++...|++++|++.|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4678999999999999999999999999999973
No 222
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.67 E-value=0.0016 Score=65.23 Aligned_cols=123 Identities=10% Similarity=0.046 Sum_probs=100.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHH
Q 017532 186 SSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALI 265 (370)
Q Consensus 186 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~ 265 (370)
..+++..|+..+.++++..| +...+....|.++.++|+.++|..+++..... +.+. ...+-.+-.|
T Consensus 21 d~~qfkkal~~~~kllkk~P-n~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~----------~~~D---~~tLq~l~~~ 86 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHP-NALYAKVLKALSLFRLGKGDEALKLLEALYGL----------KGTD---DLTLQFLQNV 86 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHhcCchhHHHHHhhhccC----------CCCc---hHHHHHHHHH
Confidence 45899999999999999999 88888888999999999999999777665422 1121 2334447889
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 266 YLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 266 ~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
|..+|++++|...|++++..+|. ....+.+=.+|.+-+.|.+-.+.--+..+..|+.
T Consensus 87 y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~ 143 (932)
T KOG2053|consen 87 YRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKR 143 (932)
T ss_pred HHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 99999999999999999999999 7777777788888888887777766777777775
No 223
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.64 E-value=0.0042 Score=57.72 Aligned_cols=135 Identities=13% Similarity=0.094 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHHhhcC
Q 017532 175 FVLNCLIGYHLS---SKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQ---------VGDLEGAKKSFNRVEEMLNEG 242 (370)
Q Consensus 175 ~~~~~la~~~~~---~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~---------~g~~~~A~~~~~~a~~l~~~~ 242 (370)
.+.+..|..+.+ .|+.++|+.++..++......+++++..+|++|-. ...+++|+..|.++.++.++
T Consensus 180 ~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~- 258 (374)
T PF13281_consen 180 NIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD- 258 (374)
T ss_pred HHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-
Confidence 345566777777 89999999999996555444899999999999943 23478999999999965432
Q ss_pred CccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHH--------hh----CCCCHHHHHHHHHHHHHhCCHHHHH
Q 017532 243 KFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECI--------ER----DYNDIVAINNKALCLMYLRDLSDSI 310 (370)
Q Consensus 243 ~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l--------~~----~p~~~~~~~nla~~~~~~g~~~~A~ 310 (370)
...-+|.+.++...|.-.+.....++.. +. .-.+...+-.++.+..-.|++++|+
T Consensus 259 -------------~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~ 325 (374)
T PF13281_consen 259 -------------YYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAI 325 (374)
T ss_pred -------------ccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHH
Confidence 3344667778888886555544444433 11 1234455567788888899999999
Q ss_pred HHHHHHHHhCCCc
Q 017532 311 KVLENALERVPTV 323 (370)
Q Consensus 311 ~~l~~al~~~p~~ 323 (370)
+.+++++...|..
T Consensus 326 ~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 326 QAAEKAFKLKPPA 338 (374)
T ss_pred HHHHHHhhcCCcc
Confidence 9999999998764
No 224
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.00021 Score=60.98 Aligned_cols=92 Identities=11% Similarity=0.099 Sum_probs=80.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHH
Q 017532 180 LIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVS 259 (370)
Q Consensus 180 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~ 259 (370)
-|+.++..++|..|+..|.++|.++| ..+..+.+.+.+++++.+++.+.....+++++ +|+. ...+
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~nP-~~~~Y~tnralchlk~~~~~~v~~dcrralql------------~~N~-vk~h 81 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICINP-TVASYYTNRALCHLKLKHWEPVEEDCRRALQL------------DPNL-VKAH 81 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcCC-CcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc------------ChHH-HHHH
Confidence 34566667899999999999999999 88888899999999999999999999999954 5665 7788
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHhh
Q 017532 260 RNKALIYLVGKDYVSAVREYEECIER 285 (370)
Q Consensus 260 ~~~g~~~~~~g~~~eA~~~~~~~l~~ 285 (370)
+.+|.+.+....|++||..+.++..+
T Consensus 82 ~flg~~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 82 YFLGQWLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHH
Confidence 88999999999999999999999655
No 225
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.62 E-value=0.02 Score=49.08 Aligned_cols=101 Identities=18% Similarity=0.154 Sum_probs=69.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHc-CCHHHHHHHHHHHHhhCCCC-HH--
Q 017532 216 GFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVG-KDYVSAVREYEECIERDYND-IV-- 291 (370)
Q Consensus 216 g~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~-g~~~eA~~~~~~~l~~~p~~-~~-- 291 (370)
+.-.++.+++++|+.++++++++..+. ..-...+.-++.+|.+|-.. .++++|+.+|+++-+....+ ..
T Consensus 80 A~~cykk~~~~eAv~cL~~aieIyt~~-------Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ss 152 (288)
T KOG1586|consen 80 AANCYKKVDPEEAVNCLEKAIEIYTDM-------GRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSS 152 (288)
T ss_pred HHHHhhccChHHHHHHHHHHHHHHHhh-------hHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhh
Confidence 333445679999999999999885542 11111144456788888766 89999999999998775332 22
Q ss_pred ---HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 292 ---AINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 292 ---~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
.+...|......++|.+|+..|+++....-++
T Consensus 153 ANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 153 ANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 23334555567899999999999988765443
No 226
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.61 E-value=0.012 Score=55.43 Aligned_cols=153 Identities=12% Similarity=0.072 Sum_probs=109.6
Q ss_pred hcCCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhH
Q 017532 186 SSKEYNVCFDLMNESIGRGN---GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNK 262 (370)
Q Consensus 186 ~~g~~~~A~~~~~~~l~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~ 262 (370)
..+|.+.+..+|+..+++-| ...+.+|..-|.-..++-++..|.+.+..|+-.||.. --+ ...
T Consensus 378 e~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~---------KlF-----k~Y 443 (677)
T KOG1915|consen 378 EAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD---------KLF-----KGY 443 (677)
T ss_pred HhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch---------hHH-----HHH
Confidence 56899999999999999888 1234667777888888999999999999999665542 111 112
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccC
Q 017532 263 ALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYV 342 (370)
Q Consensus 263 g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~ 342 (370)
-.+-...++++...+.|++-++.+|.+-.+|...|..-..+|+.+.|..+|+-|+....-. . ..++...-.=+|. .+
T Consensus 444 IelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ld-m-pellwkaYIdFEi-~~ 520 (677)
T KOG1915|consen 444 IELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALD-M-PELLWKAYIDFEI-EE 520 (677)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccc-c-HHHHHHHhhhhhh-hc
Confidence 2334567899999999999999999999999999999999999999999999998764221 1 2233222222332 23
Q ss_pred CchhhHHHHHHHH
Q 017532 343 NHSDIKRTLSSWI 355 (370)
Q Consensus 343 ~~~~~~~~ll~~~ 355 (370)
+..++.+.+-+.+
T Consensus 521 ~E~ekaR~LYerl 533 (677)
T KOG1915|consen 521 GEFEKARALYERL 533 (677)
T ss_pred chHHHHHHHHHHH
Confidence 3445666555544
No 227
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.61 E-value=6.2e-05 Score=44.37 Aligned_cols=34 Identities=18% Similarity=0.165 Sum_probs=31.4
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 017532 196 LMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKK 230 (370)
Q Consensus 196 ~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 230 (370)
+|+++|+.+| +++.+++++|.++...|++++|++
T Consensus 1 ~y~kAie~~P-~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNP-NNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCC-CCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999 999999999999999999999863
No 228
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.56 E-value=0.00015 Score=67.99 Aligned_cols=108 Identities=16% Similarity=0.149 Sum_probs=94.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHH
Q 017532 179 CLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLV 258 (370)
Q Consensus 179 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~ 258 (370)
+-+...+..++|+.|+..|.++|+++| +.+..+.+.+..+++.+++..|+.-+.++++ .+|.. ...
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldp-nca~~~anRa~a~lK~e~~~~Al~Da~kaie------------~dP~~-~K~ 74 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDP-NCAIYFANRALAHLKVESFGGALHDALKAIE------------LDPTY-IKA 74 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCC-cceeeechhhhhheeechhhhHHHHHHhhhh------------cCchh-hhe
Confidence 344566777999999999999999999 8888888889999999999999999999995 35665 777
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 017532 259 SRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCL 300 (370)
Q Consensus 259 ~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~ 300 (370)
+.-+|...+..+++.+|...|++.....|+++.+...+..|-
T Consensus 75 Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 75 YVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECN 116 (476)
T ss_pred eeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence 888999999999999999999999999999998877666554
No 229
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.51 E-value=0.0095 Score=56.14 Aligned_cols=163 Identities=15% Similarity=0.105 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccch
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILV--SKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSE 251 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~--~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~ 251 (370)
+.++..+|...+.-+.|+.|...|..+.+.....+..+. .++|.+|++.|+-+. +|+-...+.+.+. .+...
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed---~y~~ld~i~p~nt---~s~ss 440 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAED---LYKALDLIGPLNT---NSLSS 440 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHH---HHHHHHhcCCCCC---CcchH
Confidence 567778888888899999999999999987663444443 678999999888554 4444333333321 11222
Q ss_pred HHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCC-CC-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---CC
Q 017532 252 VEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDY-ND-----IVAINNKALCLMYLRDLSDSIKVLENALERV---PT 322 (370)
Q Consensus 252 p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p-~~-----~~~~~nla~~~~~~g~~~~A~~~l~~al~~~---p~ 322 (370)
--.++.+++..|...+.++++.||...+++.++... .+ .-.+..++.+..-.|+..++.+....++... |+
T Consensus 441 q~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~D 520 (629)
T KOG2300|consen 441 QRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPD 520 (629)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCC
Confidence 223466788899999999999999999999998751 11 1234456777888999999999999888764 44
Q ss_pred cchhHHHHHHHHHHHHhccC
Q 017532 323 VALNETLVVNLCSMYELAYV 342 (370)
Q Consensus 323 ~~~~~~~~~nl~~lyel~~~ 342 (370)
....-+...-+..+|.-+++
T Consensus 521 i~vqLws~si~~~L~~a~g~ 540 (629)
T KOG2300|consen 521 IPVQLWSSSILTDLYQALGE 540 (629)
T ss_pred chHHHHHHHHHHHHHHHhCc
Confidence 42333333444556665555
No 230
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.51 E-value=0.0009 Score=62.80 Aligned_cols=148 Identities=9% Similarity=0.041 Sum_probs=112.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH-HHHH
Q 017532 180 LIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF-RNLV 258 (370)
Q Consensus 180 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~-~~~~ 258 (370)
.+..|+.+.+...+..-.+.++.... +.+..+...+..++-.|++.+|.+.+...---... +-...|.. ....
T Consensus 212 kVr~llq~~~Lk~~krevK~vmn~a~-~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~-----g~~~T~q~~~cif 285 (696)
T KOG2471|consen 212 KVRFLLQTRNLKLAKREVKHVMNIAQ-DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEA-----GGTITPQLSSCIF 285 (696)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhhhcC-CCcHHHHHHHHHHHHhcchHHHHHHHHhccccccc-----Cccccchhhhhee
Confidence 34456777888888888888887777 88888888899999999999999988664311111 11234443 2456
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHh-h--------CC---------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 017532 259 SRNKALIYLVGKDYVSAVREYEECIE-R--------DY---------NDIVAINNKALCLMYLRDLSDSIKVLENALERV 320 (370)
Q Consensus 259 ~~~~g~~~~~~g~~~eA~~~~~~~l~-~--------~p---------~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~ 320 (370)
|.|+|.+++..|.|.-+..+|.+++. . .| ..-..++|.|+.++..|+.-.|.++|.+++...
T Consensus 286 ~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vf 365 (696)
T KOG2471|consen 286 NNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVF 365 (696)
T ss_pred ecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHH
Confidence 78999999999999999999999996 2 12 233688999999999999999999999999886
Q ss_pred CCcchhHHHHHHHHHH
Q 017532 321 PTVALNETLVVNLCSM 336 (370)
Q Consensus 321 p~~~~~~~~~~nl~~l 336 (370)
..+ ..+|..|+..
T Consensus 366 h~n---PrlWLRlAEc 378 (696)
T KOG2471|consen 366 HRN---PRLWLRLAEC 378 (696)
T ss_pred hcC---cHHHHHHHHH
Confidence 655 5556655543
No 231
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.49 E-value=0.07 Score=49.27 Aligned_cols=130 Identities=18% Similarity=0.080 Sum_probs=99.8
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH-HHHHHHhHHH
Q 017532 186 SSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF-RNLVSRNKAL 264 (370)
Q Consensus 186 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~-~~~~~~~~g~ 264 (370)
+.|+.+.|+++-+++-..-| .-+.++...-...+..||++.|++..+...+..--. ....+. +...+...+.
T Consensus 166 r~GareaAr~yAe~Aa~~Ap-~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie------~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 166 RLGAREAARHYAERAAEKAP-QLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIE------KDVAERSRAVLLTAKAM 238 (531)
T ss_pred hcccHHHHHHHHHHHHhhcc-CCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhc------hhhHHHHHHHHHHHHHH
Confidence 56999999999999999999 777777666667788999999999998865432110 111111 1222333344
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 265 IYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 265 ~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
... .-+...|...-.+++++.|+-..+-..-+.++++.|+..++-.+++.+.+..|.+
T Consensus 239 s~l-dadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP 296 (531)
T COG3898 239 SLL-DADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP 296 (531)
T ss_pred HHh-cCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh
Confidence 333 3457889999999999999998888888999999999999999999999999976
No 232
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=0.095 Score=49.67 Aligned_cols=133 Identities=14% Similarity=0.167 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCcc
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGR---GN------GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFE 245 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~~------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~ 245 (370)
..+.+++-+-+-.|++.+|++....+..- .| ...+.+.+.+|.-...-|.++.|+.+|..+.++..
T Consensus 324 ~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~----- 398 (629)
T KOG2300|consen 324 ILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTE----- 398 (629)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhh-----
Confidence 45556777777889999999988888653 33 12345668889888889999999999999997533
Q ss_pred CCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCC----------HHHHHHHHHHHHHhCCHHHHHHHHHH
Q 017532 246 DGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYND----------IVAINNKALCLMYLRDLSDSIKVLEN 315 (370)
Q Consensus 246 ~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~----------~~~~~nla~~~~~~g~~~~A~~~l~~ 315 (370)
..+..+..-.++|.+|...|+-+.-.+.++. +.|.| ..+++-.|.-.+..+++.||...+.+
T Consensus 399 -----~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e 470 (629)
T KOG2300|consen 399 -----SIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRE 470 (629)
T ss_pred -----HHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 3334466778899999998886654444433 34542 24677788889999999999999999
Q ss_pred HHHhC
Q 017532 316 ALERV 320 (370)
Q Consensus 316 al~~~ 320 (370)
.++..
T Consensus 471 ~Lkma 475 (629)
T KOG2300|consen 471 TLKMA 475 (629)
T ss_pred HHhhc
Confidence 99875
No 233
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=0.0022 Score=57.66 Aligned_cols=126 Identities=12% Similarity=0.000 Sum_probs=86.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHH
Q 017532 181 IGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSR 260 (370)
Q Consensus 181 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~ 260 (370)
+.++...|++.+|-...++++...| .+-.++...-.+++.+|+.+.-...+++++.... ..-|-. +.+.-
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~P-tDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn--------~dlp~~-sYv~G 179 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYP-TDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWN--------ADLPCY-SYVHG 179 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCc-hhhhhhhhhhhHHHhccchhhhhhHHHHhccccC--------CCCcHH-HHHHH
Confidence 3455566788887777888888888 7666666666777778887777777777763211 123333 45555
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 017532 261 NKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENA 316 (370)
Q Consensus 261 ~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~a 316 (370)
..++++...|-|++|.+.-++++++||.|.-+....+-++...|++.++.+.+.+-
T Consensus 180 myaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 180 MYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 67777778888888888888888888877766666666666666666666666553
No 234
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.43 E-value=0.0016 Score=52.73 Aligned_cols=109 Identities=16% Similarity=0.161 Sum_probs=73.2
Q ss_pred ccCCccchHHHHHHHHHHHHHHHHHH-hh-HhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 017532 132 KLSNRQVGLDRFYELLDFVREKLARK-LA-EKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDP 209 (370)
Q Consensus 132 ~~g~~~~al~~l~~ll~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 209 (370)
..|++..++..+..++..++...-.. .. .-.......+......+...++..+...|++++|+..+++++..+| .+.
T Consensus 18 ~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP-~~E 96 (146)
T PF03704_consen 18 RAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDP-YDE 96 (146)
T ss_dssp HTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST-T-H
T ss_pred HCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC-CCH
Confidence 34566666666666554433222111 00 0011122233334456777888899999999999999999999999 999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 017532 210 ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNE 241 (370)
Q Consensus 210 ~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~ 241 (370)
.++..+..++...|+..+|+..|++..+...+
T Consensus 97 ~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~ 128 (146)
T PF03704_consen 97 EAYRLLMRALAAQGRRAEALRVYERYRRRLRE 128 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998776543
No 235
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.42 E-value=0.00025 Score=66.47 Aligned_cols=98 Identities=17% Similarity=0.149 Sum_probs=87.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 017532 213 SKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVA 292 (370)
Q Consensus 213 ~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~ 292 (370)
-..+.-.+..++++.|+..|.+|+++. |+. +..+-+++..+++.++|..|+..+.++++.+|....+
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~ld------------pnc-a~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~ 74 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIELD------------PNC-AIYFANRALAHLKVESFGGALHDALKAIELDPTYIKA 74 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhcC------------Ccc-eeeechhhhhheeechhhhHHHHHHhhhhcCchhhhe
Confidence 345677788899999999999999654 433 5667778899999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 293 INNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 293 ~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
|+..|.+...++++.+|...|++.....|+.
T Consensus 75 Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd 105 (476)
T KOG0376|consen 75 YVRRGTAVMALGEFKKALLDLEKVKKLAPND 105 (476)
T ss_pred eeeccHHHHhHHHHHHHHHHHHHhhhcCcCc
Confidence 9999999999999999999999999999986
No 236
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.40 E-value=0.041 Score=49.76 Aligned_cols=136 Identities=20% Similarity=0.152 Sum_probs=96.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHHcC-CHHHHHHHHHHHHHHhhc-CCccCCccchHHHHH
Q 017532 186 SSKEYNVCFDLMNESIGRGNGLDP-------ILVSKLGFIQMQVG-DLEGAKKSFNRVEEMLNE-GKFEDGLLSEVEFRN 256 (370)
Q Consensus 186 ~~g~~~~A~~~~~~~l~~~~~~~~-------~~~~~lg~~~~~~g-~~~~A~~~~~~a~~l~~~-~~~~~~~~~~p~~~~ 256 (370)
+.|+++.|..++.++-...+..++ ..+++.|.-....+ +++.|..+++++.++++. ...+.......+.+.
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 469999999999999665411222 45588888888899 999999999999999644 211111122234557
Q ss_pred HHHHhHHHHHHHcCCHHH---HHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 017532 257 LVSRNKALIYLVGKDYVS---AVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVP 321 (370)
Q Consensus 257 ~~~~~~g~~~~~~g~~~e---A~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p 321 (370)
.+...++.++...+.++. |....+.+-...|+.+..+...-.++.+.++.+++.+.+.+++...+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 777888999988877654 44444455455688777775544555568999999999999998754
No 237
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.38 E-value=0.00032 Score=41.14 Aligned_cols=31 Identities=26% Similarity=0.293 Sum_probs=20.1
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017532 258 VSRNKALIYLVGKDYVSAVREYEECIERDYN 288 (370)
Q Consensus 258 ~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~ 288 (370)
+++.+|.++...|++++|++.|+++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4555666666666666666666666666663
No 238
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.32 E-value=0.0016 Score=65.31 Aligned_cols=102 Identities=16% Similarity=0.123 Sum_probs=83.9
Q ss_pred HHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 017532 220 MQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALC 299 (370)
Q Consensus 220 ~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~ 299 (370)
...+++.+|.+...+.++-.| +. ..+....|.+++++|+.++|..+++..-...++|-.++-.+-.|
T Consensus 20 ld~~qfkkal~~~~kllkk~P------------n~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~ 86 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHP------------NA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNV 86 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCC------------Cc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHH
Confidence 456888999999999985433 33 45566699999999999999998888877888899999999999
Q ss_pred HHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Q 017532 300 LMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYE 338 (370)
Q Consensus 300 ~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lye 338 (370)
|..+|++++|...|++++..+|+ +..++.+-..|.
T Consensus 87 y~d~~~~d~~~~~Ye~~~~~~P~----eell~~lFmayv 121 (932)
T KOG2053|consen 87 YRDLGKLDEAVHLYERANQKYPS----EELLYHLFMAYV 121 (932)
T ss_pred HHHHhhhhHHHHHHHHHHhhCCc----HHHHHHHHHHHH
Confidence 99999999999999999999998 455555544443
No 239
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.26 E-value=0.00071 Score=63.50 Aligned_cols=127 Identities=14% Similarity=0.074 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH-HhCCCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HhhcCCc
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNES-IGRGNGL--------DPILVSKLGFIQMQVGDLEGAKKSFNRVEE-MLNEGKF 244 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~-l~~~~~~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~-l~~~~~~ 244 (370)
..++..+..++.+|+|..|...+... +...+ . ....++++|.+++++|.+.-+..+|.+|++ .+..-..
T Consensus 241 ~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~-g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~ 319 (696)
T KOG2471|consen 241 MALLLKSQLEYAHGNHPKAMKLLLVSNIHKEA-GGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRN 319 (696)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHhccccccc-CccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhc
Confidence 45556677888999999999988765 33333 2 234568999999999999999999999996 2321100
Q ss_pred c-CCc---cchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 017532 245 E-DGL---LSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMY 302 (370)
Q Consensus 245 ~-~~~---~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~ 302 (370)
. .+. ....+...++.+|.|..|...|+.-.|.++|.+++.....+|..|..+|.|...
T Consensus 320 g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 320 GLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred cCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 0 000 111122367889999999999999999999999999999999999999987754
No 240
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=0.015 Score=52.43 Aligned_cols=213 Identities=13% Similarity=0.117 Sum_probs=134.7
Q ss_pred cCcccCCccchHHHHHHHHHHHHHHHHHHh---------------hHhhHHhHHHHHHHH---HHHHHHHHHHHHhcCCH
Q 017532 129 LPIKLSNRQVGLDRFYELLDFVREKLARKL---------------AEKLEESVKSWKKRE---IFVLNCLIGYHLSSKEY 190 (370)
Q Consensus 129 ~~~~~g~~~~al~~l~~ll~~~~~~~~~~~---------------~~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~ 190 (370)
+....|++.+|-...+.++...+..+-.-+ .......+..|..-+ ..+.-..+-.+.+.|-|
T Consensus 112 i~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred HhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 346678888888888888877665542210 011122233333333 45666777888899999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcC
Q 017532 191 NVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGK 270 (370)
Q Consensus 191 ~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g 270 (370)
++|...-++++++++ .+..+...++.++.-.|++.++.++.++-....+.+ .-- .+..|-.-+.+++..+
T Consensus 192 ~dAEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s--------~ml-asHNyWH~Al~~iE~a 261 (491)
T KOG2610|consen 192 DDAEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS--------WML-ASHNYWHTALFHIEGA 261 (491)
T ss_pred hhHHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhh--------hHH-HhhhhHHHHHhhhccc
Confidence 999999999999999 999999999999999999999999988866433221 000 1344566799999999
Q ss_pred CHHHHHHHHHHHHh--hCCCCHHHHH---HHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCch
Q 017532 271 DYVSAVREYEECIE--RDYNDIVAIN---NKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHS 345 (370)
Q Consensus 271 ~~~eA~~~~~~~l~--~~p~~~~~~~---nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~ 345 (370)
.|+.|++.|.+-+- +..+|..+.. -+-.+...+..+.+ ++-+..-+. .........+|.++++..+.....+
T Consensus 262 eye~aleIyD~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~k-ld~la~~l~--d~a~~~~d~~~~itt~~~~~~~~~~ 338 (491)
T KOG2610|consen 262 EYEKALEIYDREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRK-LDKLADSLT--DKAMWYQDWLFDITTIWALSKVEKT 338 (491)
T ss_pred chhHHHHHHHHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHH-HHhhhhhhc--chhhhhhhhhhhhhHHhhhhhhhhh
Confidence 99999999988653 3455553322 11111111111111 111111111 1112335678899999988777666
Q ss_pred hhHHHHHHH
Q 017532 346 DIKRTLSSW 354 (370)
Q Consensus 346 ~~~~~ll~~ 354 (370)
.-+-++++.
T Consensus 339 ~l~~~ll~~ 347 (491)
T KOG2610|consen 339 SLAHELLEL 347 (491)
T ss_pred hhHHHHHHH
Confidence 666666653
No 241
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.18 E-value=0.12 Score=48.15 Aligned_cols=176 Identities=14% Similarity=0.002 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHhhcCCccC
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGR----GNGLDPILVSKLGFIQMQ---VGDLEGAKKSFNRVEEMLNEGKFED 246 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~~~~~~~~~~~lg~~~~~---~g~~~~A~~~~~~a~~l~~~~~~~~ 246 (370)
..+..++-..|....+|+.=+.+++.+-.. .+ ..+......|.++-+ .|+.++|+..+..++.-..
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~-~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~------ 213 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVA-NQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDE------ 213 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchh-cchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccC------
Confidence 345556667788899999999999988766 23 455666777888888 9999999999999764322
Q ss_pred CccchHHHHHHHHHhHHHHHH----H-----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 017532 247 GLLSEVEFRNLVSRNKALIYL----V-----GKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENAL 317 (370)
Q Consensus 247 ~~~~~p~~~~~~~~~~g~~~~----~-----~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al 317 (370)
..+|+ .+...|.+|- . ....++|+.+|+++.+.+|+ ...=.|++.++.-.|...+...-+++..
T Consensus 214 --~~~~d----~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~g~~~~~~~el~~i~ 286 (374)
T PF13281_consen 214 --NPDPD----TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLAGHDFETSEELRKIG 286 (374)
T ss_pred --CCChH----HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHcCCcccchHHHHHHH
Confidence 23444 2333444432 1 33578999999999999965 4444567777777776555544443333
Q ss_pred --------HhC-CCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCCCCCC
Q 017532 318 --------ERV-PTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDDFDS 365 (370)
Q Consensus 318 --------~~~-p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d~~~~ 365 (370)
+.. -+.....|.+-.+..+.-|..+ .++.....+..-+..|..+.+
T Consensus 287 ~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d--~~ka~~a~e~~~~l~~~~W~l 341 (374)
T PF13281_consen 287 VKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGD--YEKAIQAAEKAFKLKPPAWEL 341 (374)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHHHcCC--HHHHHHHHHHHhhcCCcchhH
Confidence 111 1111223444445555544443 566666666654545555443
No 242
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.013 Score=50.52 Aligned_cols=104 Identities=14% Similarity=0.109 Sum_probs=84.0
Q ss_pred cccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHH---HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 017532 131 IKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKK---REIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGL 207 (370)
Q Consensus 131 ~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 207 (370)
+..|++.+|...|++++...+...-..++.. ..|.+ ...-.+.+.+.|++..|+|-++++.+..++..+| .
T Consensus 189 fk~~~ykEA~~~YreAi~~l~~L~lkEkP~e-----~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~-~ 262 (329)
T KOG0545|consen 189 FKLGRYKEASSKYREAIICLRNLQLKEKPGE-----PEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHP-G 262 (329)
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHhccCCCC-----hHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCC-c
Confidence 6779999999999998866655543322221 12333 2355677999999999999999999999999999 9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 017532 208 DPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLN 240 (370)
Q Consensus 208 ~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~ 240 (370)
+..+++..|......-+.++|..-|.+++++.+
T Consensus 263 nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 263 NVKAYFRRAKAHAAVWNEAEAKADLQKVLELDP 295 (329)
T ss_pred hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCh
Confidence 999999999999999999999999999996533
No 243
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.13 E-value=0.37 Score=48.74 Aligned_cols=284 Identities=12% Similarity=0.066 Sum_probs=164.5
Q ss_pred hHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHH-HHHH---HHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCC
Q 017532 34 SLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTY-LAYN---TLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHI 109 (370)
Q Consensus 34 ~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~-~~~~---~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~ 109 (370)
.+.....+.+...|.+.+++.+... ...+. ..| +.++ +...+..+.+..|...++.+.....
T Consensus 105 ll~~i~~~~~~~~a~~~l~~~I~~~-~~~~~--~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~----------- 170 (608)
T PF10345_consen 105 LLARIYFKTNPKAALKNLDKAIEDS-ETYGH--SAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLAN----------- 170 (608)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHH-hccCc--hhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhh-----------
Confidence 3344555555566888887765542 11222 222 2222 2233333789999998888854431
Q ss_pred CCCCCCcc-cchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 017532 110 YPNRTGSM-VPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSK 188 (370)
Q Consensus 110 ~~~~~~~~-~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 188 (370)
..+.. +-....++.+-+....+.+..+++.+.......... ...... .......|...+ -.-+++..|
T Consensus 171 ---~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~-q~~~~~-~~~qL~~~~lll------~l~~~l~~~ 239 (608)
T PF10345_consen 171 ---QRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSL-QLDPSV-HIPQLKALFLLL------DLCCSLQQG 239 (608)
T ss_pred ---hcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhc-ccCCCC-CcHHHHHHHHHH------HHHHHHHcC
Confidence 11111 212233444555567788888888777765444433 111111 112334443221 112455667
Q ss_pred CHHHHHHHHHHH---HhCCCCC------------------------C-H-------------HHHHHHHHHHHHcCCHHH
Q 017532 189 EYNVCFDLMNES---IGRGNGL------------------------D-P-------------ILVSKLGFIQMQVGDLEG 227 (370)
Q Consensus 189 ~~~~A~~~~~~~---l~~~~~~------------------------~-~-------------~~~~~lg~~~~~~g~~~~ 227 (370)
+++.+...++++ +...... . + -.+..-|...+..|..++
T Consensus 240 ~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~k 319 (608)
T PF10345_consen 240 DVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDK 319 (608)
T ss_pred CHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchH
Confidence 766666554444 2211100 0 0 122344667788888889
Q ss_pred HHHHHHHHHHHhhcCC-c-c-CCcc----------chHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC---CC---
Q 017532 228 AKKSFNRVEEMLNEGK-F-E-DGLL----------SEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD---YN--- 288 (370)
Q Consensus 228 A~~~~~~a~~l~~~~~-~-~-~~~~----------~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~---p~--- 288 (370)
|.++++++++...+.. . . .... -...++.......+.+.+..|++.+|....+.+.... |.
T Consensus 320 s~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~ 399 (608)
T PF10345_consen 320 SEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLY 399 (608)
T ss_pred HHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchh
Confidence 9999999988765532 0 0 0000 0011234556678999999999999999999887653 22
Q ss_pred ---CHHHHHHHHHHHHHhCCHHHHHHHHH--------HHHHhCCCcchhHHHHHHHHHHHHhccC
Q 017532 289 ---DIVAINNKALCLMYLRDLSDSIKVLE--------NALERVPTVALNETLVVNLCSMYELAYV 342 (370)
Q Consensus 289 ---~~~~~~nla~~~~~~g~~~~A~~~l~--------~al~~~p~~~~~~~~~~nl~~lyel~~~ 342 (370)
.+..++-.|+.+...|+++.|...|. .+....+...+.--+..|+..++.-...
T Consensus 400 ~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~ 464 (608)
T PF10345_consen 400 ESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESS 464 (608)
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcc
Confidence 46788899999999999999999997 5556666654555666788888875444
No 244
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.12 E-value=0.0011 Score=39.60 Aligned_cols=31 Identities=26% Similarity=0.370 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 017532 211 LVSKLGFIQMQVGDLEGAKKSFNRVEEMLNE 241 (370)
Q Consensus 211 ~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~ 241 (370)
++..||.+|.++|++++|+++|++++.+..+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4678999999999999999999998866543
No 245
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.06 E-value=0.0012 Score=38.57 Aligned_cols=32 Identities=28% Similarity=0.292 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 291 VAINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 291 ~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
.+++.+|.++...|++++|++.|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 57899999999999999999999999999984
No 246
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.054 Score=47.91 Aligned_cols=222 Identities=11% Similarity=0.105 Sum_probs=135.4
Q ss_pred ChHhHHHHHHcCChHHHHHHHHHhhhccccCCch---HHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccC
Q 017532 31 DLASLQDLATRGSWRTIIDNVSRARSQSLLTQPH---HHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYP 107 (370)
Q Consensus 31 ~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~---~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~ 107 (370)
-......+++.+++++|+..|.++.+.|...+.. ...+......-.++..|++..-......... +++
T Consensus 6 sle~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre------~m~--- 76 (421)
T COG5159 6 SLELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSRE------AME--- 76 (421)
T ss_pred hHHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHH------HHH---
Confidence 3567788999999999999999998776432221 1112222224557777777655443332210 001
Q ss_pred CCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhc
Q 017532 108 HIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSS 187 (370)
Q Consensus 108 ~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 187 (370)
+.+.+-..-..|.+...++......+.-+......++...+.-. ...+ ...-.-++..+++.
T Consensus 77 ----~ftk~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr-----------~fLr---~~Le~Kli~l~y~~ 138 (421)
T COG5159 77 ----DFTKPKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKR-----------KFLR---LELECKLIYLLYKT 138 (421)
T ss_pred ----HhcchhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHH-----------HHHH---HHHHHHHHHHHHhc
Confidence 11111122234555555555445544444444444433322110 1111 12223566789999
Q ss_pred CCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhH
Q 017532 188 KEYNVCFDLMNESIGR----GNG-LDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNK 262 (370)
Q Consensus 188 g~~~~A~~~~~~~l~~----~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~ 262 (370)
|.|.+|+.....++.. +.. .-...+..-..+|.......++...+..|--+...- ++.|..++..-..-
T Consensus 139 ~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~------YCPpqlqa~lDL~s 212 (421)
T COG5159 139 GKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSA------YCPPQLQAQLDLLS 212 (421)
T ss_pred ccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhcc------CCCHHHHHHHHHhc
Confidence 9999999987777542 211 122344555788989999999999988776554443 78888878888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhh
Q 017532 263 ALIYLVGKDYVSAVREYEECIER 285 (370)
Q Consensus 263 g~~~~~~g~~~eA~~~~~~~l~~ 285 (370)
|...+...+|..|..+|-++++-
T Consensus 213 GIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 213 GILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred cceeeccccchhHHHHHHHHHhc
Confidence 88889999999999999888775
No 247
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.004 Score=55.91 Aligned_cols=98 Identities=15% Similarity=0.105 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccch
Q 017532 176 VLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLD----PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSE 251 (370)
Q Consensus 176 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~----~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~ 251 (370)
.+-.-|+-|++.++|..|+..|.+.++..+ .+ ..+|.+.+-+.+..|+|-.|+.-..+++.+ +
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc-~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~------------~ 149 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKC-ADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL------------K 149 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcC-CCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc------------C
Confidence 334567888999999999999999999877 54 356788899999999999999999999953 4
Q ss_pred HHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 017532 252 VEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDY 287 (370)
Q Consensus 252 p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p 287 (370)
|.. ..+++--+.|++...++.+|+.+++..+.++-
T Consensus 150 P~h-~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 150 PTH-LKAYIRGAKCLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred cch-hhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 544 66677788999999999999999998877653
No 248
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.00 E-value=0.007 Score=44.48 Aligned_cols=49 Identities=16% Similarity=0.174 Sum_probs=42.9
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 275 AVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 275 A~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
.+..+++.++.+|+|..+.+.+|..+...|++++|++.+-.+++.++++
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 4677899999999999999999999999999999999999999999875
No 249
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.98 E-value=0.032 Score=48.21 Aligned_cols=166 Identities=10% Similarity=0.042 Sum_probs=90.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHH-HH--HHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccch
Q 017532 176 VLNCLIGYHLSSKEYNVCFDLMNESIGRGN-GLDPI-LV--SKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSE 251 (370)
Q Consensus 176 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~-~~--~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~ 251 (370)
.+-..+...-.+..+.++..+++++...+. ...++ +- ...+--.+..-++++|+..|++++.+.... ..
T Consensus 73 ayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~-------dr 145 (308)
T KOG1585|consen 73 AYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED-------DR 145 (308)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc-------ch
Confidence 344444455556667777777777766554 01111 11 222223344566777777777777665542 11
Q ss_pred HHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcch
Q 017532 252 VEFRNLVSRNKALIYLVGKDYVSAVREYEECIER------DYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVAL 325 (370)
Q Consensus 252 p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~------~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~ 325 (370)
.......+...+.++.+..+|.||-..+.+-... .|..-..+....++++...+|..|..+++..-+. |.+..
T Consensus 146 ~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi-p~f~~ 224 (308)
T KOG1585|consen 146 DQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI-PAFLK 224 (308)
T ss_pred HHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC-ccccC
Confidence 1112344444566777777777777666654322 1333345556666677777888888777766554 33422
Q ss_pred --hHHHHHHHHHHHHhccCCchhhHHHHH
Q 017532 326 --NETLVVNLCSMYELAYVNHSDIKRTLS 352 (370)
Q Consensus 326 --~~~~~~nl~~lyel~~~~~~~~~~~ll 352 (370)
....+-||-+.|+ +++-+...+++
T Consensus 225 sed~r~lenLL~ayd---~gD~E~~~kvl 250 (308)
T KOG1585|consen 225 SEDSRSLENLLTAYD---EGDIEEIKKVL 250 (308)
T ss_pred hHHHHHHHHHHHHhc---cCCHHHHHHHH
Confidence 2244456666665 44445444444
No 250
>PRK10941 hypothetical protein; Provisional
Probab=96.97 E-value=0.016 Score=51.82 Aligned_cols=72 Identities=18% Similarity=0.140 Sum_probs=66.3
Q ss_pred HHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 252 VEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 252 p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
..+......++-.++...++++.|+.+.+.++.++|+++.-+.-+|.+|.++|.+..|...++.-++..|+.
T Consensus 177 ~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~d 248 (269)
T PRK10941 177 IEVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPED 248 (269)
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCc
Confidence 334456677788999999999999999999999999999999999999999999999999999999999987
No 251
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.96 E-value=0.0018 Score=37.47 Aligned_cols=31 Identities=26% Similarity=0.490 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 292 AINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 292 ~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
+++++|.++...|++++|++.|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3455555555555555555555555555553
No 252
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.96 E-value=0.0016 Score=37.68 Aligned_cols=32 Identities=22% Similarity=0.205 Sum_probs=29.4
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 017532 258 VSRNKALIYLVGKDYVSAVREYEECIERDYND 289 (370)
Q Consensus 258 ~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~ 289 (370)
+++.+|.++...|++++|++.|+++++..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 56789999999999999999999999999974
No 253
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.94 E-value=0.47 Score=49.15 Aligned_cols=124 Identities=15% Similarity=0.083 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
..++..+|..-++.|...+|++.|-++ +|+..+.....+..+.|.|++-+.++.-+-+-.+.+ +.+.+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~------~id~e 1171 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREP------YIDSE 1171 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc------cchHH
Confidence 456678899999999999999999887 788889888999999999999999988776544433 22222
Q ss_pred HH--------------------HHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 017532 254 FR--------------------NLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVL 313 (370)
Q Consensus 254 ~~--------------------~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l 313 (370)
.. ..-.-..|.-++..|.|+.|.-.|.. ..-|..+|..+.++|+|+.|+..-
T Consensus 1172 Li~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~a 1243 (1666)
T KOG0985|consen 1172 LIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAA 1243 (1666)
T ss_pred HHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHh
Confidence 10 00012256777777788777766643 445677999999999999999988
Q ss_pred HHHH
Q 017532 314 ENAL 317 (370)
Q Consensus 314 ~~al 317 (370)
++|-
T Consensus 1244 RKAn 1247 (1666)
T KOG0985|consen 1244 RKAN 1247 (1666)
T ss_pred hhcc
Confidence 8874
No 254
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.93 E-value=0.23 Score=43.09 Aligned_cols=128 Identities=17% Similarity=0.190 Sum_probs=82.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 180 LIGYHLSSKEYNVCFDLMNESIGRGNGLD-----PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 180 la~~~~~~g~~~~A~~~~~~~l~~~~~~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
.+.-.++..+.++|+.+|++++..-..++ ...+...++++.+...+++|-..+.+-..+... ...-+.
T Consensus 116 KAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~-------~~~y~~ 188 (308)
T KOG1585|consen 116 KAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADK-------CDAYNS 188 (308)
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHH-------Hhhccc
Confidence 33445556677888888888877655222 245567778888888888888888777643221 000000
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIER----DYNDIVAINNKALCLMYLRDLSDSIKVLEN 315 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~----~p~~~~~~~nla~~~~~~g~~~~A~~~l~~ 315 (370)
....++..-.++....+|..|..+|+..-.+ .|++..+.-||- ..+..|+.++....+..
T Consensus 189 ~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL-~ayd~gD~E~~~kvl~s 252 (308)
T KOG1585|consen 189 QCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLL-TAYDEGDIEEIKKVLSS 252 (308)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHH-HHhccCCHHHHHHHHcC
Confidence 1233444456667778999999999987665 366777777774 45577888887777644
No 255
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.92 E-value=0.00044 Score=62.13 Aligned_cols=93 Identities=15% Similarity=0.160 Sum_probs=82.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 017532 218 IQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKA 297 (370)
Q Consensus 218 ~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla 297 (370)
-.+..|++++|+++|..++.+ +|.. +..+..++.+++++++...|+..|..+++++|+...-|-.++
T Consensus 123 eAln~G~~~~ai~~~t~ai~l------------np~~-a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg 189 (377)
T KOG1308|consen 123 EALNDGEFDTAIELFTSAIEL------------NPPL-AILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRG 189 (377)
T ss_pred HHhcCcchhhhhccccccccc------------CCch-hhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhh
Confidence 334578899999999999953 4444 778888999999999999999999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 298 LCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 298 ~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
.+..-+|++.+|..++..+.+++-+.
T Consensus 190 ~A~rllg~~e~aa~dl~~a~kld~dE 215 (377)
T KOG1308|consen 190 YAERLLGNWEEAAHDLALACKLDYDE 215 (377)
T ss_pred HHHHHhhchHHHHHHHHHHHhccccH
Confidence 99999999999999999999997663
No 256
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.89 E-value=0.15 Score=44.79 Aligned_cols=135 Identities=13% Similarity=0.187 Sum_probs=97.3
Q ss_pred HHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHH
Q 017532 74 TLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREK 153 (370)
Q Consensus 74 ~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~ 153 (370)
+-++.++|.|......++++.+-++ ...|...+. ..++.+..|+.+.+-..++..- .....
T Consensus 184 ~~~llG~kEy~iS~d~~~~vi~~~~-----------------e~~p~L~s~-Lgr~~MQ~GD~k~a~~yf~~ve-k~~~k 244 (366)
T KOG2796|consen 184 ANCLLGMKEYVLSVDAYHSVIKYYP-----------------EQEPQLLSG-LGRISMQIGDIKTAEKYFQDVE-KVTQK 244 (366)
T ss_pred HHHHhcchhhhhhHHHHHHHHHhCC-----------------cccHHHHHH-HHHHHHhcccHHHHHHHHHHHH-HHHhh
Confidence 4468889999999998988864321 112223232 2344577788777766665543 22222
Q ss_pred HHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 017532 154 LARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFN 233 (370)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 233 (370)
+... . ....++-+.+.+++..++|.+|...+.+++..++ .++.+.++.+.+.+..|+..+|++..+
T Consensus 245 L~~~-----q--------~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e 310 (366)
T KOG2796|consen 245 LDGL-----Q--------GKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLE 310 (366)
T ss_pred hhcc-----c--------hhHHHHhhhhhheecccchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHH
Confidence 2110 0 0124566788899999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHhhc
Q 017532 234 RVEEMLNE 241 (370)
Q Consensus 234 ~a~~l~~~ 241 (370)
.+....|.
T Consensus 311 ~~~~~~P~ 318 (366)
T KOG2796|consen 311 AMVQQDPR 318 (366)
T ss_pred HHhccCCc
Confidence 99976655
No 257
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.88 E-value=0.0018 Score=38.55 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=13.7
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHH
Q 017532 259 SRNKALIYLVGKDYVSAVREYEECI 283 (370)
Q Consensus 259 ~~~~g~~~~~~g~~~eA~~~~~~~l 283 (370)
+.++|.++...|+|++|+++|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445666666666666666666643
No 258
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.87 E-value=0.021 Score=51.67 Aligned_cols=100 Identities=19% Similarity=0.175 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHH-cCCHHHHHHHHHHHHhhCCCC
Q 017532 211 LVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLV-GKDYVSAVREYEECIERDYND 289 (370)
Q Consensus 211 ~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~-~g~~~eA~~~~~~~l~~~p~~ 289 (370)
+|..+.+...+.+..+.|...|.+|.+ .. ... ..+|...|.+-+. .++.+.|.+.|+.+++..|.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~---~~------~~~----~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~ 69 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARK---DK------RCT----YHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD 69 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC---CC------CS-----THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHc---CC------CCC----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC
Confidence 455666777777889999999999972 11 122 4557777888555 667666999999999999999
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 290 IVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 290 ~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
...+.....-+...|+.+.|..+|++++..-|..
T Consensus 70 ~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~ 103 (280)
T PF05843_consen 70 PDFWLEYLDFLIKLNDINNARALFERAISSLPKE 103 (280)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCch
Confidence 9999999999999999999999999999987754
No 259
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.72 E-value=0.048 Score=51.95 Aligned_cols=146 Identities=8% Similarity=0.046 Sum_probs=93.9
Q ss_pred CccchHHHHHHHHHHHHHHHHHHh-hHhhHHhHHHHHHHH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC
Q 017532 135 NRQVGLDRFYELLDFVREKLARKL-AEKLEESVKSWKKRE----IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNG-LD 208 (370)
Q Consensus 135 ~~~~al~~l~~ll~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-~~ 208 (370)
...++.+.+.+.++..+..+.... .+......+.|..|. ..+...+|.+..+.|+.++|+..++++++..|. +.
T Consensus 215 Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~ 294 (539)
T PF04184_consen 215 TIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDN 294 (539)
T ss_pred CHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccch
Confidence 345666666666555554443321 111122233444442 556678999999999999999999999998873 34
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHH-------------cC---CH
Q 017532 209 PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLV-------------GK---DY 272 (370)
Q Consensus 209 ~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~-------------~g---~~ 272 (370)
..+..+|..+++..+.+.++...+.+-..+ .-|.. +.+.+..+.+..+ .| --
T Consensus 295 l~IrenLie~LLelq~Yad~q~lL~kYdDi-----------~lpkS-Ati~YTaALLkaRav~d~fs~e~a~rRGls~ae 362 (539)
T PF04184_consen 295 LNIRENLIEALLELQAYADVQALLAKYDDI-----------SLPKS-ATICYTAALLKARAVGDKFSPEAASRRGLSPAE 362 (539)
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHhccc-----------cCCch-HHHHHHHHHHHHHhhccccCchhhhhcCCChhH
Confidence 568899999999999999999998886532 01111 2223333443322 11 12
Q ss_pred HHHHHHHHHHHhhCCCCHHH
Q 017532 273 VSAVREYEECIERDYNDIVA 292 (370)
Q Consensus 273 ~eA~~~~~~~l~~~p~~~~~ 292 (370)
..|++.++++++.||..+..
T Consensus 363 ~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 363 MNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred HHHHHHHHHHHHhCCCCchh
Confidence 34788999999999986644
No 260
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.71 E-value=0.0051 Score=59.16 Aligned_cols=99 Identities=11% Similarity=0.080 Sum_probs=79.3
Q ss_pred HHHHHH-HHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 017532 214 KLGFIQ-MQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVA 292 (370)
Q Consensus 214 ~lg~~~-~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~ 292 (370)
+++-+| .-.|+...|++++..|+.. .|.-......+++.+++..|-.-+|-..+.+++.++...+..
T Consensus 611 n~aglywr~~gn~~~a~~cl~~a~~~------------~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~ 678 (886)
T KOG4507|consen 611 NEAGLYWRAVGNSTFAIACLQRALNL------------APLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLT 678 (886)
T ss_pred ecccceeeecCCcHHHHHHHHHHhcc------------ChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchH
Confidence 334444 4478999999999999843 333223445678999999999999999999999998888888
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcc
Q 017532 293 INNKALCLMYLRDLSDSIKVLENALERVPTVA 324 (370)
Q Consensus 293 ~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~ 324 (370)
++.+|.+++-+.+.+.|++.|..|+.++|+..
T Consensus 679 ~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~ 710 (886)
T KOG4507|consen 679 FLSLGNAYLALKNISGALEAFRQALKLTTKCP 710 (886)
T ss_pred HHhcchhHHHHhhhHHHHHHHHHHHhcCCCCh
Confidence 89999999999999999999999999998864
No 261
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.62 E-value=0.079 Score=40.51 Aligned_cols=103 Identities=16% Similarity=0.095 Sum_probs=71.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh-------CCC
Q 017532 216 GFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIER-------DYN 288 (370)
Q Consensus 216 g~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~-------~p~ 288 (370)
|.-.++-|-+++|...+.++..+.+..+. ........+.+..+-.++-.+...|+|++++..-.+++.. +.+
T Consensus 16 ae~ql~~g~~~eAa~s~r~AM~~srtiP~-eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qd 94 (144)
T PF12968_consen 16 AERQLQDGAYEEAAASCRKAMEVSRTIPA-EEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQD 94 (144)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHHTTS-T-TS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTST
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccCCh-HhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccc
Confidence 44556778999999999999987655321 0112233333555666788888999999988777777654 344
Q ss_pred CH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 289 DI----VAINNKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 289 ~~----~~~~nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
.- .+.+++|+++..+|+.++|+..|+.+-++
T Consensus 95 eGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 95 EGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 33 46679999999999999999999988654
No 262
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.49 E-value=0.061 Score=43.68 Aligned_cols=97 Identities=23% Similarity=0.217 Sum_probs=54.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 017532 212 VSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIV 291 (370)
Q Consensus 212 ~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~ 291 (370)
+..+..+-++.++.+++...++-+--+.|. . ....+..|.+++..|+|.+|+..|+.+.+..|..+.
T Consensus 13 Lie~~~~al~~~~~~D~e~lL~ALrvLRP~------------~-~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~ 79 (160)
T PF09613_consen 13 LIEVLSVALRLGDPDDAEALLDALRVLRPE------------F-PELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPY 79 (160)
T ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCC------------c-hHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChH
Confidence 344455555666666666666554433222 1 333444566666666666666666666666666666
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 292 AINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 292 ~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
+--.++.|+..+|+.+= ..+-+++++..++
T Consensus 80 ~kALlA~CL~~~~D~~W-r~~A~evle~~~d 109 (160)
T PF09613_consen 80 AKALLALCLYALGDPSW-RRYADEVLESGAD 109 (160)
T ss_pred HHHHHHHHHHHcCChHH-HHHHHHHHhcCCC
Confidence 66666666666665432 2333344444443
No 263
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.49 E-value=0.081 Score=45.72 Aligned_cols=94 Identities=14% Similarity=0.030 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCH-------HHHHHHHHHHHhhC--CC----C
Q 017532 223 GDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDY-------VSAVREYEECIERD--YN----D 289 (370)
Q Consensus 223 g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~-------~eA~~~~~~~l~~~--p~----~ 289 (370)
-.+++|++.|.-|+-...-. ..++..++..+..+|.+|..+|+. ..|.+.|+++++.. |. .
T Consensus 91 Rt~~~ai~~YkLAll~~~~~------~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~ 164 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIK------KEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDE 164 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHh------CCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchH
Confidence 34555555555554332211 123333366666777777777774 44666666666553 22 3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 290 IVAINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 290 ~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
..+.+.+|.+..+.|++++|+..|.+++...-.
T Consensus 165 ~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 165 ATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 478889999999999999999999999986443
No 264
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.41 E-value=0.0015 Score=58.78 Aligned_cols=92 Identities=13% Similarity=0.149 Sum_probs=79.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhH
Q 017532 183 YHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNK 262 (370)
Q Consensus 183 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~ 262 (370)
-.+..|.++.|+..|-.++.++| ....++...+.+++.+++...|+.-+..++.+.++. +.-+..+
T Consensus 123 eAln~G~~~~ai~~~t~ai~lnp-~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds-------------a~~ykfr 188 (377)
T KOG1308|consen 123 EALNDGEFDTAIELFTSAIELNP-PLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDS-------------AKGYKFR 188 (377)
T ss_pred HHhcCcchhhhhcccccccccCC-chhhhcccccceeeeccCCchhhhhhhhhhccCccc-------------ccccchh
Confidence 44567999999999999999999 999999999999999999999999999999664442 4445557
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017532 263 ALIYLVGKDYVSAVREYEECIERDYN 288 (370)
Q Consensus 263 g~~~~~~g~~~eA~~~~~~~l~~~p~ 288 (370)
|.....+|+|++|...|+.+.+++-+
T Consensus 189 g~A~rllg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 189 GYAERLLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred hHHHHHhhchHHHHHHHHHHHhcccc
Confidence 88888999999999999999988643
No 265
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.41 E-value=0.013 Score=56.48 Aligned_cols=104 Identities=12% Similarity=0.055 Sum_probs=88.2
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHH
Q 017532 185 LSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKAL 264 (370)
Q Consensus 185 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~ 264 (370)
...|+...|+.++..++...|......+.+|+.+.++.|-.-+|-..+.+++.+... .| ...+.+|.
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~s---------ep----l~~~~~g~ 684 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSS---------EP----LTFLSLGN 684 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhccc---------Cc----hHHHhcch
Confidence 356999999999999999988555567788999999999999999999999977532 33 23566899
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 017532 265 IYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLM 301 (370)
Q Consensus 265 ~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~ 301 (370)
.+....+.+.|++.|++++.++|+++..-+.+-.+.+
T Consensus 685 ~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 685 AYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred hHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999999999999999999999999988887766555
No 266
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.41 E-value=0.11 Score=39.77 Aligned_cols=102 Identities=13% Similarity=0.023 Sum_probs=70.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC---CC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCcc
Q 017532 181 IGYHLSSKEYNVCFDLMNESIGRGN---GL--------DPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLL 249 (370)
Q Consensus 181 a~~~~~~g~~~~A~~~~~~~l~~~~---~~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~ 249 (370)
+.-.+..|-|++|...+++++.... .. +...+..|+..+..+|+|++++..-++++........ ...
T Consensus 16 ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGE--L~q 93 (144)
T PF12968_consen 16 AERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGE--LHQ 93 (144)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH----TTS
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccc--ccc
Confidence 3445566999999999999976543 01 2345577888999999999999999999877543210 001
Q ss_pred ch-HHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh
Q 017532 250 SE-VEFRNLVSRNKALIYLVGKDYVSAVREYEECIER 285 (370)
Q Consensus 250 ~~-p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~ 285 (370)
.. .-+ ..+.+++|..+-..|+.++|+..|+.+-+.
T Consensus 94 deGklW-IaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 94 DEGKLW-IAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp THHHHH-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ccchhH-HHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 11 123 455678999999999999999999988653
No 267
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.40 E-value=0.0068 Score=33.95 Aligned_cols=30 Identities=37% Similarity=0.373 Sum_probs=19.0
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017532 259 SRNKALIYLVGKDYVSAVREYEECIERDYN 288 (370)
Q Consensus 259 ~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~ 288 (370)
+..+|.+++..|++++|+.+|+++++.+|.
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 445666666666666666666666666554
No 268
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.28 E-value=0.48 Score=44.49 Aligned_cols=126 Identities=13% Similarity=-0.018 Sum_probs=88.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcC----C-------c---cCCccchHH
Q 017532 188 KEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEG----K-------F---EDGLLSEVE 253 (370)
Q Consensus 188 g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~----~-------~---~~~~~~~p~ 253 (370)
.|.+.=+. .++.+| .+..++..++.++.++||.+.|.+..++|+-..... . . ..-....++
T Consensus 24 ~Dp~~l~~----ll~~~P-yHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~e 98 (360)
T PF04910_consen 24 HDPNALIN----LLQKNP-YHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPE 98 (360)
T ss_pred cCHHHHHH----HHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCcccc
Confidence 45544443 346689 999999999999999999999999999987443310 0 0 001112222
Q ss_pred HH--HHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHH-HHHHHHHHHHhCCHHHHHHHHHHHHH
Q 017532 254 FR--NLVSRNKALIYLVGKDYVSAVREYEECIERDYN-DIVA-INNKALCLMYLRDLSDSIKVLENALE 318 (370)
Q Consensus 254 ~~--~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~-~~~~-~~nla~~~~~~g~~~~A~~~l~~al~ 318 (370)
++ -.+.......+...|-+..|.++.+-.+.+||. |+.. ...+=....+.++++--+..++....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 21 334445667778899999999999999999998 8854 44444555678999888888887654
No 269
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.28 E-value=0.0075 Score=33.76 Aligned_cols=32 Identities=28% Similarity=0.362 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 291 VAINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 291 ~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
.+++++|.++...|++++|+..++++++.+|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 46889999999999999999999999998885
No 270
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.26 E-value=0.49 Score=42.91 Aligned_cols=129 Identities=21% Similarity=0.136 Sum_probs=92.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHH
Q 017532 188 KEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQ----VGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKA 263 (370)
Q Consensus 188 g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g 263 (370)
++..+|..+|+.+... .++...+.+|.+|.. ..|+.+|..+|.++.+... .+. ......+|
T Consensus 91 ~~~~~A~~~~~~~a~~---g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~----------~~a--~~~~~~l~ 155 (292)
T COG0790 91 RDKTKAADWYRCAAAD---GLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGN----------VEA--ALAMYRLG 155 (292)
T ss_pred ccHHHHHHHHHHHhhc---ccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCC----------hhH--HHHHHHHH
Confidence 5688899999965443 557788889999987 4489999999999986311 110 12244566
Q ss_pred HHHHHcC-------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCcchhHHHHHH
Q 017532 264 LIYLVGK-------DYVSAVREYEECIERDYNDIVAINNKALCLMY----LRDLSDSIKVLENALERVPTVALNETLVVN 332 (370)
Q Consensus 264 ~~~~~~g-------~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~----~g~~~~A~~~l~~al~~~p~~~~~~~~~~n 332 (370)
..+..-+ +...|...|.++-... ++.+.+++|.+|.. ..++.+|+..|.++.+... ....++
T Consensus 156 ~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~-----~~a~~~ 228 (292)
T COG0790 156 LAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD-----GAACYN 228 (292)
T ss_pred HHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC-----HHHHHH
Confidence 6655531 3347899999988775 78888899988865 3478999999999988865 456777
Q ss_pred HHHHHH
Q 017532 333 LCSMYE 338 (370)
Q Consensus 333 l~~lye 338 (370)
++.+|.
T Consensus 229 ~~~~~~ 234 (292)
T COG0790 229 LGLMYL 234 (292)
T ss_pred HHHHHh
Confidence 775553
No 271
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.23 E-value=1.2 Score=45.72 Aligned_cols=289 Identities=16% Similarity=0.077 Sum_probs=151.1
Q ss_pred HhHHHHHHcCChHHHHHHHHHh----hhcc--------ccCCchHHHH----HHHHHHHHHhhhcCHHHHHHHhhhcCCC
Q 017532 33 ASLQDLATRGSWRTIIDNVSRA----RSQS--------LLTQPHHHLT----YLAYNTLALMKLRRFDEAQQELDSLEDF 96 (370)
Q Consensus 33 ~~l~~l~~~g~~~~Ai~~~~~~----~~~~--------~~~~P~~~~~----~~~~~~~al~~l~~~~~A~~~~~~~~~l 96 (370)
..+...+..|++.-|..+.++. +..+ ...-|.+.+. .....+|.+....++.+|...+.++...
T Consensus 365 eAI~hAlaA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~ 444 (894)
T COG2909 365 EAIDHALAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHF 444 (894)
T ss_pred HHHHHHHhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 4677778888888888777663 1100 0122332111 1233588989999999999988887432
Q ss_pred C-CCCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHH
Q 017532 97 N-SSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIF 175 (370)
Q Consensus 97 ~-~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (370)
- .+... ..+. .--.+..+.+.+....|+++.+++.....+....... |..+ ..
T Consensus 445 l~~~~~~----------~~~~-l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~--------------~~~r-~~ 498 (894)
T COG2909 445 LKAPMHS----------RQGD-LLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA--------------YRSR-IV 498 (894)
T ss_pred hCcCccc----------chhh-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc--------------chhh-hh
Confidence 1 11110 0001 1113345566666788888888877766654433221 1111 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CCH--HHHHHHHHHHHHcCC--HHHHHHHHHHHHHHhhcCCccCCc
Q 017532 176 VLNCLIGYHLSSKEYNVCFDLMNESIGRGNG---LDP--ILVSKLGFIQMQVGD--LEGAKKSFNRVEEMLNEGKFEDGL 248 (370)
Q Consensus 176 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~---~~~--~~~~~lg~~~~~~g~--~~~A~~~~~~a~~l~~~~~~~~~~ 248 (370)
++..++.+..-.|++++|..+.+++.+.... ... .+....+.++..+|+ +.+....|.......-... .
T Consensus 499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~----~ 574 (894)
T COG2909 499 ALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQK----P 574 (894)
T ss_pred hhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc----c
Confidence 4456777777789999988888888665321 122 233555777888883 3333444444322110000 0
Q ss_pred cchHHHHHHHHHhHHHHH-HHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CC
Q 017532 249 LSEVEFRNLVSRNKALIY-LVGKDYVSAVREYEECIERDYNDI---VAINNKALCLMYLRDLSDSIKVLENALERV--PT 322 (370)
Q Consensus 249 ~~~p~~~~~~~~~~g~~~-~~~g~~~eA~~~~~~~l~~~p~~~---~~~~nla~~~~~~g~~~~A~~~l~~al~~~--p~ 322 (370)
-..+-. .+......++ ...+...+|...++-.....|... .+++++|.+....|++++|...+....... +.
T Consensus 575 ~~~f~~--~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~ 652 (894)
T COG2909 575 RHEFLV--RIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ 652 (894)
T ss_pred cchhHH--HHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC
Confidence 001111 1111111111 244555666666666655544432 223467777777788888777777765542 21
Q ss_pred c-chhHHHHHHHHHHHHhccCCchhhHHHHHHH
Q 017532 323 V-ALNETLVVNLCSMYELAYVNHSDIKRTLSSW 354 (370)
Q Consensus 323 ~-~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~ 354 (370)
+ ............+|.+...+. +....++..
T Consensus 653 ~~~~~~a~~~~v~~~lwl~qg~~-~~a~~~l~~ 684 (894)
T COG2909 653 YHVDYLAAAYKVKLILWLAQGDK-ELAAEWLLK 684 (894)
T ss_pred CCchHHHHHHHhhHHHhcccCCH-HHHHHHHHh
Confidence 1 122444555555666554443 444444443
No 272
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.22 E-value=0.049 Score=41.18 Aligned_cols=105 Identities=11% Similarity=0.162 Sum_probs=68.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHH
Q 017532 181 IGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSR 260 (370)
Q Consensus 181 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~ 260 (370)
+..++..|++-+|+++.++++.... .+...+ .++..+|++ +++.+.. ..+|+.+ .
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~-~~~~~~----~lh~~QG~i-----f~~lA~~-----------ten~d~k--~-- 57 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHG-EDESSW----LLHRLQGTI-----FYKLAKK-----------TENPDVK--F-- 57 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHcc-CCCchH----HHHHHHhHH-----HHHHHHh-----------ccCchHH--H--
Confidence 4567788999999999999998887 544332 223334442 2333332 2345441 1
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 261 NKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 261 ~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
.|+ -.|+++|.++..+.|..+..++.+|.-+--..-|++++.-.++++..
T Consensus 58 ----~yL-----l~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 58 ----RYL-----LGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred ----HHH-----HHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 111 24678899999999998888888877665556677777777776654
No 273
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.20 E-value=1.8 Score=44.41 Aligned_cols=170 Identities=14% Similarity=0.012 Sum_probs=111.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 179 CLIGYHLSSKEYNVCFDLMNESIGRGN----GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 179 ~la~~~~~~g~~~~A~~~~~~~l~~~~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
..+.+....|+.+.|+.+.+.++..-| ......+..+|.+..-.|++++|..+..++.++...- ..+-+
T Consensus 463 L~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~-------~~~~l 535 (894)
T COG2909 463 LRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQH-------DVYHL 535 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc-------ccHHH
Confidence 455677778999999999999998777 2234667889999999999999999999999887662 33333
Q ss_pred HHHHHHhHHHHHHHcC--CHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----CCCcc
Q 017532 255 RNLVSRNKALIYLVGK--DYVSAVREYEECIER----DYNDIVAINNKALCLMYLRDLSDSIKVLENALER----VPTVA 324 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g--~~~eA~~~~~~~l~~----~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~----~p~~~ 324 (370)
...+....+.++..+| .+.+....|...-+. .|-..-....++.++...-+++.+..-..+.++. .|.+.
T Consensus 536 ~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~ 615 (894)
T COG2909 536 ALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPL 615 (894)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchh
Confidence 4667777899999999 444555555544332 2333323333333332222366666666665554 34443
Q ss_pred hhHHHHHHHHHHHHhccCCchhhHHHHHHHHhh
Q 017532 325 LNETLVVNLCSMYELAYVNHSDIKRTLSSWIGR 357 (370)
Q Consensus 325 ~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~ 357 (370)
....+.+.|+.++-+.. +-++....+..+..
T Consensus 616 ~~~~~~~~LA~l~~~~G--dl~~A~~~l~~~~~ 646 (894)
T COG2909 616 LSRLALSMLAELEFLRG--DLDKALAQLDELER 646 (894)
T ss_pred HHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHH
Confidence 43444468888887544 46666666666643
No 274
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.19 E-value=0.57 Score=38.57 Aligned_cols=126 Identities=13% Similarity=0.121 Sum_probs=91.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH-HHHHHHh
Q 017532 184 HLSSKEYNVCFDLMNESIGRGNGLDP-ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF-RNLVSRN 261 (370)
Q Consensus 184 ~~~~g~~~~A~~~~~~~l~~~~~~~~-~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~-~~~~~~~ 261 (370)
+.+.+..++|+.-|..+-+.+-...+ -+....|.+..+.|+...|+..|..+-.-. .-|.. +..+..-
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt----------~~P~~~rd~ARlr 137 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT----------SIPQIGRDLARLR 137 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC----------CCcchhhHHHHHH
Confidence 44558888999998888776652333 345677889999999999999999986321 12222 2344455
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 262 KALIYLVGKDYVSAVREYEECI-ERDYNDIVAINNKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 262 ~g~~~~~~g~~~eA~~~~~~~l-~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
-+.+++..|-|++-....+..- +.+|--..+.--||.+..+.|++.+|.+.|..+..-
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 6788899999998766665543 234555567778899999999999999999988763
No 275
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=96.18 E-value=0.027 Score=53.14 Aligned_cols=125 Identities=15% Similarity=0.137 Sum_probs=101.0
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHH
Q 017532 185 LSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKAL 264 (370)
Q Consensus 185 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~ 264 (370)
...||.-.|-+-+..+++..| .++......+.+...+|+|+.|...+.-+..+.... +. ..-.+-.
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~-~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~--------~~-----~~~~~~r 365 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQ-QDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTT--------DS-----TLRCRLR 365 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCC-CCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCC--------ch-----HHHHHHH
Confidence 345999999999999999999 999999999999999999999988877666543331 11 1112344
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 265 IYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 265 ~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
..+..|++++|...-+-++...-.++.+...-|.....+|-+|++.-++.+.+.++|..
T Consensus 366 ~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 366 SLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred hhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 56789999999999888887777788887777888888999999999999999998853
No 276
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.17 E-value=0.33 Score=48.41 Aligned_cols=145 Identities=21% Similarity=0.210 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHh
Q 017532 174 IFVLNCLIGYHLS-----SKEYNVCFDLMNESIGR----GNGLDPILVSKLGFIQMQVG-----DLEGAKKSFNRVEEML 239 (370)
Q Consensus 174 ~~~~~~la~~~~~-----~g~~~~A~~~~~~~l~~----~~~~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~a~~l~ 239 (370)
......+|.++.. .+|.+.|+.+++.+.+. .....+.+.+.+|.+|.+.. +.+.|..+|.++.++
T Consensus 244 ~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~- 322 (552)
T KOG1550|consen 244 SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL- 322 (552)
T ss_pred hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc-
Confidence 3444555555553 36899999999999771 11134567888999999854 678899999999853
Q ss_pred hcCCccCCccchHHHHHHHHHhHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hCCHHHHHHH
Q 017532 240 NEGKFEDGLLSEVEFRNLVSRNKALIYLVGK---DYVSAVREYEECIERDYNDIVAINNKALCLMY----LRDLSDSIKV 312 (370)
Q Consensus 240 ~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g---~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~----~g~~~~A~~~ 312 (370)
.. ..+.+.+|.++..-. ++..|.++|..+... .+..+.+++|+|+.. ..+...|..+
T Consensus 323 ----------g~----~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~ 386 (552)
T KOG1550|consen 323 ----------GN----PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAY 386 (552)
T ss_pred ----------CC----chHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHH
Confidence 22 234566888887765 578999999998765 467888899988864 3579999999
Q ss_pred HHHHHHhCCCcchhHHHHHHHHHHHHhc
Q 017532 313 LENALERVPTVALNETLVVNLCSMYELA 340 (370)
Q Consensus 313 l~~al~~~p~~~~~~~~~~nl~~lyel~ 340 (370)
+.++.+.++ ....+.+..+|+..
T Consensus 387 ~k~aA~~g~-----~~A~~~~~~~~~~g 409 (552)
T KOG1550|consen 387 YKKAAEKGN-----PSAAYLLGAFYEYG 409 (552)
T ss_pred HHHHHHccC-----hhhHHHHHHHHHHc
Confidence 999999884 34455666666644
No 277
>PRK10941 hypothetical protein; Provisional
Probab=96.17 E-value=0.088 Score=47.11 Aligned_cols=68 Identities=16% Similarity=0.107 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 017532 173 EIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNE 241 (370)
Q Consensus 173 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~ 241 (370)
+.+.+.++-.+|.+.++++.|+.+.+.++...| +++.-+.-.|.+|.++|.+..|..-++..++.+|+
T Consensus 180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P-~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~ 247 (269)
T PRK10941 180 IRKLLDTLKAALMEEKQMELALRASEALLQFDP-EDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE 247 (269)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Confidence 357778888999999999999999999999999 99999999999999999999999999999988776
No 278
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.17 E-value=0.19 Score=42.09 Aligned_cols=102 Identities=17% Similarity=0.194 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh--CC
Q 017532 210 ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIER--DY 287 (370)
Q Consensus 210 ~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~--~p 287 (370)
.++..+|.-|.+.||+++|.+.|.++..- ...+..+.+.+++.-.+.+..|++.....+..++-.. .+
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~----------~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~ 106 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDY----------CTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKG 106 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhh----------cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc
Confidence 56788999999999999999999998753 2344445777888889999999999999999998655 24
Q ss_pred CCHHHHH----HHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 017532 288 NDIVAIN----NKALCLMYLRDLSDSIKVLENALERVP 321 (370)
Q Consensus 288 ~~~~~~~----nla~~~~~~g~~~~A~~~l~~al~~~p 321 (370)
.++...+ -.|..++..++|.+|-+.|-.+..-..
T Consensus 107 ~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 107 GDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred chHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence 4454333 357788889999999999988765543
No 279
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.14 E-value=0.93 Score=41.07 Aligned_cols=129 Identities=16% Similarity=0.099 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHhhc
Q 017532 174 IFVLNCLIGYHLS----SKEYNVCFDLMNESIGRGNGLD-PILVSKLGFIQMQVG-------DLEGAKKSFNRVEEMLNE 241 (370)
Q Consensus 174 ~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~-~~~~~~lg~~~~~~g-------~~~~A~~~~~~a~~l~~~ 241 (370)
....+.+|..+.. ..|+.+|..+|+++...+. .. ..+.+.+|..|..-+ +...|...|.++...
T Consensus 109 ~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~-~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~--- 184 (292)
T COG0790 109 AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGN-VEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL--- 184 (292)
T ss_pred HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh---
Confidence 3466778888776 4599999999999998866 33 344788888887642 333788888888753
Q ss_pred CCccCCccchHHHHHHHHHhHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC-------------
Q 017532 242 GKFEDGLLSEVEFRNLVSRNKALIYLV----GKDYVSAVREYEECIERDYNDIVAINNKALCLMYLR------------- 304 (370)
Q Consensus 242 ~~~~~~~~~~p~~~~~~~~~~g~~~~~----~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g------------- 304 (370)
.+ ..+...+|.+|.. ..++.+|+.+|.++.+... ....++++ ++...|
T Consensus 185 --------~~----~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~ 249 (292)
T COG0790 185 --------GN----PDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAK 249 (292)
T ss_pred --------cC----HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhccccc
Confidence 12 3345667877755 4489999999999999876 88888898 777666
Q ss_pred --CHHHHHHHHHHHHHhCC
Q 017532 305 --DLSDSIKVLENALERVP 321 (370)
Q Consensus 305 --~~~~A~~~l~~al~~~p 321 (370)
+...|...+..+....+
T Consensus 250 ~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 250 EEDKKQALEWLQKACELGF 268 (292)
T ss_pred CCCHHHHHHHHHHHHHcCC
Confidence 55555555555555444
No 280
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.06 E-value=0.3 Score=48.69 Aligned_cols=152 Identities=16% Similarity=0.102 Sum_probs=107.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHH
Q 017532 189 EYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQV-----GDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKA 263 (370)
Q Consensus 189 ~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~-----g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g 263 (370)
+-..|..+++.+... .+..+...+|.++..- .|++.|+.+|+.+.+-..... .... ..+...+|
T Consensus 227 ~~~~a~~~~~~~a~~---g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a----~~~~----~~a~~~lg 295 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL---GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAA----TKGL----PPAQYGLG 295 (552)
T ss_pred hhhHHHHHHHHHHhh---cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH----hhcC----CccccHHH
Confidence 356788888888765 4577788888888764 689999999999975100000 0001 22345578
Q ss_pred HHHHHcC-----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Q 017532 264 LIYLVGK-----DYVSAVREYEECIERDYNDIVAINNKALCLMYLR---DLSDSIKVLENALERVPTVALNETLVVNLCS 335 (370)
Q Consensus 264 ~~~~~~g-----~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g---~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~ 335 (370)
.+|.... ++..|+.+|.++.+.+ ++.+.+++|.++..-. ++..|.++|..|....- ....++++.
T Consensus 296 ~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-----~~A~~~la~ 368 (552)
T KOG1550|consen 296 RLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-----ILAIYRLAL 368 (552)
T ss_pred HHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-----hHHHHHHHH
Confidence 8888743 7888999999998874 4567788999998765 57899999999987654 578899999
Q ss_pred HHHhc--cCCchhhHHHHHHHHhhh
Q 017532 336 MYELA--YVNHSDIKRTLSSWIGRV 358 (370)
Q Consensus 336 lyel~--~~~~~~~~~~ll~~~~~~ 358 (370)
+|+.. ...+.+....+..+++..
T Consensus 369 ~y~~G~gv~r~~~~A~~~~k~aA~~ 393 (552)
T KOG1550|consen 369 CYELGLGVERNLELAFAYYKKAAEK 393 (552)
T ss_pred HHHhCCCcCCCHHHHHHHHHHHHHc
Confidence 99976 223345566665555443
No 281
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.01 E-value=0.36 Score=47.12 Aligned_cols=181 Identities=15% Similarity=0.206 Sum_probs=114.1
Q ss_pred CCcCCChHhHHHHH-HcCChHHHHHHHHHhhhccccCCchHHHHHHHHH--HHHHhhh----cCHHHHHHHhhhcCCCCC
Q 017532 26 NDLVPDLASLQDLA-TRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYN--TLALMKL----RRFDEAQQELDSLEDFNS 98 (370)
Q Consensus 26 ~~~~~~~~~l~~l~-~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~--~~al~~l----~~~~~A~~~~~~~~~l~~ 98 (370)
.-||+....+-..+ =.|+=+.+++++.++....-...|--.+.-+++- +..++.. ...+.|...+..+...
T Consensus 185 SlLPp~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~-- 262 (468)
T PF10300_consen 185 SLLPPKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR-- 262 (468)
T ss_pred HhCCHHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--
Confidence 55565554444443 3577777777777764433222232112212211 2223332 3455566666555221
Q ss_pred CCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHH
Q 017532 99 SGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLN 178 (370)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (370)
||+ + ..+....+++....|+.++|++.+...+... ..|++-..-.++
T Consensus 263 -----------yP~---s---~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q----------------~~~~Ql~~l~~~ 309 (468)
T PF10300_consen 263 -----------YPN---S---ALFLFFEGRLERLKGNLEEAIESFERAIESQ----------------SEWKQLHHLCYF 309 (468)
T ss_pred -----------CCC---c---HHHHHHHHHHHHHhcCHHHHHHHHHHhccch----------------hhHHhHHHHHHH
Confidence 221 1 1334556777778899999999888755211 123333345667
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHhhc
Q 017532 179 CLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDL-------EGAKKSFNRVEEMLNE 241 (370)
Q Consensus 179 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~-------~~A~~~~~~a~~l~~~ 241 (370)
.++-++.-+.+|++|...+.++.+.+.+......+..|.++...|+. ++|.+.|.++-.+...
T Consensus 310 El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k 379 (468)
T PF10300_consen 310 ELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQK 379 (468)
T ss_pred HHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhh
Confidence 88899999999999999999999988765666668889999999999 8888888888766553
No 282
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.01 E-value=0.029 Score=50.03 Aligned_cols=72 Identities=11% Similarity=0.008 Sum_probs=63.7
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHH
Q 017532 260 RNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLC 334 (370)
Q Consensus 260 ~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~ 334 (370)
.+.+.-..+.|+.++|...|+.++++.|.++.++..+|......++.-+|-.+|-+|+..+|.+ +.++.|-+
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~n---seALvnR~ 191 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGN---SEALVNRA 191 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCc---hHHHhhhh
Confidence 3455566789999999999999999999999999999999999999999999999999999987 66666544
No 283
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.96 E-value=0.042 Score=35.80 Aligned_cols=31 Identities=16% Similarity=0.131 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 293 INNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 293 ~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
++.+|+++.++|++++|..+++.+++..|++
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N 34 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDN 34 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc
Confidence 4455666666666666666666666666654
No 284
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.88 E-value=0.47 Score=42.88 Aligned_cols=132 Identities=16% Similarity=0.159 Sum_probs=86.0
Q ss_pred HHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcC-CHHHHHHHHHHHHhh----CC------
Q 017532 219 QMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGK-DYVSAVREYEECIER----DY------ 287 (370)
Q Consensus 219 ~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g-~~~eA~~~~~~~l~~----~p------ 287 (370)
.+..||++.|..+|.++..+.... ++......+...++.|......+ ++++|+.+++++.++ .+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~-----~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~ 77 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSL-----DPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSP 77 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcC-----CcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCC
Confidence 467899999999999998765321 12222334788899999999999 999999999999887 21
Q ss_pred C----CHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhC
Q 017532 288 N----DIVAINNKALCLMYLRDLS---DSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVA 359 (370)
Q Consensus 288 ~----~~~~~~nla~~~~~~g~~~---~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~ 359 (370)
+ ...++..++.++...+..+ +|..+++.+....|+.. ...+..+.-+-- ..+..+....+.+.|...+
T Consensus 78 ~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~--~~~~L~l~il~~--~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 78 DGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKP--EVFLLKLEILLK--SFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred cHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCc--HHHHHHHHHHhc--cCChhHHHHHHHHHHHhcc
Confidence 1 1246678889998877754 45556656656667631 222233333322 2333455555555555544
No 285
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.82 E-value=0.056 Score=35.22 Aligned_cols=41 Identities=20% Similarity=0.046 Sum_probs=33.4
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 017532 258 VSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKAL 298 (370)
Q Consensus 258 ~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~ 298 (370)
.++.+|..+++.|+|++|..+.+.+++.+|+|..+..-...
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 35678999999999999999999999999999987665443
No 286
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.76 E-value=0.03 Score=34.08 Aligned_cols=32 Identities=16% Similarity=0.110 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 017532 210 ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNE 241 (370)
Q Consensus 210 ~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~ 241 (370)
.++.++|.+|..+|++++|+.++++++.+...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 34 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRER 34 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence 46788899999999999999999998876554
No 287
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=95.74 E-value=0.15 Score=47.50 Aligned_cols=101 Identities=12% Similarity=0.045 Sum_probs=73.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhcCCccCC-ccchH----HHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 017532 216 GFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDG-LLSEV----EFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI 290 (370)
Q Consensus 216 g~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~-~~~~p----~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~ 290 (370)
|..++++|+|..|.--|..+++++.+...... .+..+ ...+.+-..+..||..+++.+-|+.+-.+.|-++|.+.
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 44556677777777777777777765432000 01111 11234445588999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH
Q 017532 291 VAINNKALCLMYLRDLSDSIKVLENA 316 (370)
Q Consensus 291 ~~~~nla~~~~~~g~~~~A~~~l~~a 316 (370)
.-+...|.|...+.+|.+|-..+--+
T Consensus 263 rnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 263 RNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998766554
No 288
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=1.6 Score=39.82 Aligned_cols=221 Identities=14% Similarity=0.073 Sum_probs=126.9
Q ss_pred hHhHHHHHHcCChHHHHHHHHHhhhc--cccCCchHH---HHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCccccc
Q 017532 32 LASLQDLATRGSWRTIIDNVSRARSQ--SLLTQPHHH---LTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETY 106 (370)
Q Consensus 32 ~~~l~~l~~~g~~~~Ai~~~~~~~~~--~~~~~P~~~---~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~ 106 (370)
....+.+....+++++++.+.++... +....+... .....-..-.|.+.|++++-...+.... .|+...
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~R------pf~~~v 81 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLR------PFLSSV 81 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH------HHHHHh
Confidence 45667778888889999998887542 211222110 1112222456788888888776665541 011100
Q ss_pred CCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHh
Q 017532 107 PHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLS 186 (370)
Q Consensus 107 ~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 186 (370)
+..-..-..|.+.-.++.-.+....-++...+.+++..+.- -+..+. ..-..++..|+.
T Consensus 82 -------~KakaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ek-----------RtFLRq---~Learli~Ly~d 140 (411)
T KOG1463|consen 82 -------SKAKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREK-----------RTFLRQ---SLEARLIRLYND 140 (411)
T ss_pred -------hhHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHh-----------HHHHHH---HHHHHHHHHHHh
Confidence 00001111232222222222223333333333222222110 111111 222356778889
Q ss_pred cCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHh
Q 017532 187 SKEYNVCFDLMNESIGRGN-GLD----PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRN 261 (370)
Q Consensus 187 ~g~~~~A~~~~~~~l~~~~-~~~----~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~ 261 (370)
.++|.+|+.....+++.-. -+| ......-..+|....++.+|...+..|--..... ++.|..++..-+.
T Consensus 141 ~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~Anai------YcpPqlQa~lDLq 214 (411)
T KOG1463|consen 141 TKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAI------YCPPQLQATLDLQ 214 (411)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhccc------ccCHHHHHHHHHh
Confidence 9999999998877764322 011 2334455778888999999999998876544332 7888888888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Q 017532 262 KALIYLVGKDYVSAVREYEECIER 285 (370)
Q Consensus 262 ~g~~~~~~g~~~eA~~~~~~~l~~ 285 (370)
-|.++....+|..|..+|=++.+-
T Consensus 215 SGIlha~ekDykTafSYFyEAfEg 238 (411)
T KOG1463|consen 215 SGILHAAEKDYKTAFSYFYEAFEG 238 (411)
T ss_pred ccceeecccccchHHHHHHHHHcc
Confidence 899999999999999999888765
No 289
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.69 E-value=0.19 Score=40.82 Aligned_cols=118 Identities=19% Similarity=0.052 Sum_probs=79.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHH
Q 017532 177 LNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRN 256 (370)
Q Consensus 177 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~ 256 (370)
+..+..+-+..++.+++..++..+--..| ..+..-..-|.+++..|++++|+..|+.+..-. ...|
T Consensus 13 Lie~~~~al~~~~~~D~e~lL~ALrvLRP-~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~---------~~~p---- 78 (160)
T PF09613_consen 13 LIEVLSVALRLGDPDDAEALLDALRVLRP-EFPELDLFDGWLHIVRGDWDDALRLLRELEERA---------PGFP---- 78 (160)
T ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC---------CCCh----
Confidence 34455566677899999999999999999 889888889999999999999999999987321 2233
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 017532 257 LVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIK 311 (370)
Q Consensus 257 ~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~ 311 (370)
...-.++.|++.+|+.+= ..+-.++++.++ ++.+.. +...+........|..
T Consensus 79 ~~kALlA~CL~~~~D~~W-r~~A~evle~~~-d~~a~~-Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 79 YAKALLALCLYALGDPSW-RRYADEVLESGA-DPDARA-LVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHHHHHHHcCChHH-HHHHHHHHhcCC-ChHHHH-HHHHHHHhccccchhh
Confidence 233448889988888542 222233444443 444433 3334444444444444
No 290
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.67 E-value=0.14 Score=37.89 Aligned_cols=75 Identities=17% Similarity=0.125 Sum_probs=54.4
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCC----C-----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Q 017532 265 IYLVGKDYVSAVREYEECIERDY----N-----DIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCS 335 (370)
Q Consensus 265 ~~~~~g~~~eA~~~~~~~l~~~p----~-----~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~ 335 (370)
.....|+|.+|++.+.+..+... . ...+..++|.+....|++++|+..+++++++-........+.+-+..
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~ 86 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSW 86 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 34688999999999988876631 1 13577889999999999999999999999885543222444444444
Q ss_pred HHHh
Q 017532 336 MYEL 339 (370)
Q Consensus 336 lyel 339 (370)
++.+
T Consensus 87 ~~~l 90 (94)
T PF12862_consen 87 LANL 90 (94)
T ss_pred HHHH
Confidence 4443
No 291
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.65 E-value=0.11 Score=44.81 Aligned_cols=112 Identities=13% Similarity=0.080 Sum_probs=67.2
Q ss_pred hcCCHHHHHHHHHHHHhCC-----C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHH
Q 017532 186 SSKEYNVCFDLMNESIGRG-----N-GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVS 259 (370)
Q Consensus 186 ~~g~~~~A~~~~~~~l~~~-----~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~ 259 (370)
....+++|+..|.-++-.. + ..-+.++..+|++|...|+.+....++++|+............+..+-....+.
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 3456667776666554321 1 112345678899999999976666666666554332111000011111114566
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHH
Q 017532 260 RNKALIYLVGKDYVSAVREYEECIERDYND-IVAINNKA 297 (370)
Q Consensus 260 ~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~-~~~~~nla 297 (370)
+.+|.+..+.|++++|+.+|.+++...-.. ...+.++|
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~A 207 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMA 207 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHH
Confidence 789999999999999999999999764222 23444444
No 292
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.62 E-value=0.97 Score=45.05 Aligned_cols=92 Identities=15% Similarity=0.155 Sum_probs=43.5
Q ss_pred hHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCC
Q 017532 34 SLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNR 113 (370)
Q Consensus 34 ~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~ 113 (370)
....|+..=-.+.|++.. +.+|+. -.|-.+.-.++.++ .++-|+..|-+.++-....+.- +
T Consensus 669 D~~~Lve~vgledA~qfi--------EdnPHp-rLWrllAe~Al~Kl-~l~tAE~AFVrc~dY~Gik~vk---------r 729 (1189)
T KOG2041|consen 669 DVMNLVEAVGLEDAIQFI--------EDNPHP-RLWRLLAEYALFKL-ALDTAEHAFVRCGDYAGIKLVK---------R 729 (1189)
T ss_pred hHHHHHHHhchHHHHHHH--------hcCCch-HHHHHHHHHHHHHH-hhhhHhhhhhhhccccchhHHH---------H
Confidence 444555555556666543 347872 22322222456665 5566666666664332111110 0
Q ss_pred CCcccchhHHHHHHHcCcccCCccchHHHHHHH
Q 017532 114 TGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYEL 146 (370)
Q Consensus 114 ~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~l 146 (370)
-+.+ .+-..-.|++..+.|++++|...+-++
T Consensus 730 l~~i--~s~~~q~aei~~~~g~feeaek~yld~ 760 (1189)
T KOG2041|consen 730 LRTI--HSKEQQRAEISAFYGEFEEAEKLYLDA 760 (1189)
T ss_pred hhhh--hhHHHHhHhHhhhhcchhHhhhhhhcc
Confidence 0000 011112355556678888887766543
No 293
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.62 E-value=1.1 Score=37.07 Aligned_cols=141 Identities=9% Similarity=0.055 Sum_probs=91.3
Q ss_pred cccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--
Q 017532 131 IKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLD-- 208 (370)
Q Consensus 131 ~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~-- 208 (370)
...|.+++|+..|..+.... -+..+ .-+....+.+..++|+-..|+..|.++-.-.+...
T Consensus 69 A~~~k~d~Alaaf~~lektg--------~g~Yp----------vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~ 130 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTG--------YGSYP----------VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIG 130 (221)
T ss_pred HHcCCchHHHHHHHHHHhcC--------CCcch----------HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchh
Confidence 45677888877776653210 00000 12233566778889999999999999876555211
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 017532 209 -PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDY 287 (370)
Q Consensus 209 -~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p 287 (370)
..+...-+.++...|-|++-..-.+..- . ..+|- +..+.-.+|+..++.|++.+|.++|.++.. |.
T Consensus 131 rd~ARlraa~lLvD~gsy~dV~srvepLa---~--------d~n~m-R~sArEALglAa~kagd~a~A~~~F~qia~-Da 197 (221)
T COG4649 131 RDLARLRAAYLLVDNGSYDDVSSRVEPLA---G--------DGNPM-RHSAREALGLAAYKAGDFAKAKSWFVQIAN-DA 197 (221)
T ss_pred hHHHHHHHHHHHhccccHHHHHHHhhhcc---C--------CCChh-HHHHHHHHhHHHHhccchHHHHHHHHHHHc-cc
Confidence 2334555777888999887555444332 1 12232 255666789999999999999999999877 55
Q ss_pred CCHHHHHHHHHHHHH
Q 017532 288 NDIVAINNKALCLMY 302 (370)
Q Consensus 288 ~~~~~~~nla~~~~~ 302 (370)
..+....+++.+.+.
T Consensus 198 ~aprnirqRAq~mld 212 (221)
T COG4649 198 QAPRNIRQRAQIMLD 212 (221)
T ss_pred cCcHHHHHHHHHHHH
Confidence 556666666665543
No 294
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=95.58 E-value=1.8 Score=43.48 Aligned_cols=35 Identities=20% Similarity=0.218 Sum_probs=28.6
Q ss_pred HHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 017532 256 NLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI 290 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~ 290 (370)
..++..++.-+-..|++++|-++|-+++.++.-+.
T Consensus 995 ~~vhlk~a~~ledegk~edaskhyveaiklntyni 1029 (1636)
T KOG3616|consen 995 GEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNI 1029 (1636)
T ss_pred ccchhHHhhhhhhccchhhhhHhhHHHhhcccccc
Confidence 34566688888899999999999999999975443
No 295
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.49 E-value=0.034 Score=33.79 Aligned_cols=29 Identities=31% Similarity=0.331 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 291 VAINNKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 291 ~~~~nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
.+++|+|.++...|++++|+.++++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46777888888888888888888877765
No 296
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.48 E-value=0.025 Score=48.38 Aligned_cols=59 Identities=14% Similarity=0.043 Sum_probs=55.5
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 265 IYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 265 ~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
.....++.+.|.+.|.+++++-|.....|+.+|....+.|+++.|.+.|++.++++|..
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 45678999999999999999999999999999999999999999999999999999975
No 297
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.42 E-value=0.46 Score=42.50 Aligned_cols=127 Identities=13% Similarity=0.020 Sum_probs=82.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-H
Q 017532 213 SKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI-V 291 (370)
Q Consensus 213 ~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~-~ 291 (370)
..-+.-....|++.+|...|..++...++ . ..+...++.|+...|+.++|...+...-.....+. .
T Consensus 138 ~~~~~~~~~~e~~~~a~~~~~~al~~~~~------------~-~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~ 204 (304)
T COG3118 138 LAEAKELIEAEDFGEAAPLLKQALQAAPE------------N-SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAH 204 (304)
T ss_pred HHHhhhhhhccchhhHHHHHHHHHHhCcc------------c-chHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHH
Confidence 33466677899999999999999975444 2 56677899999999999999888776422222111 1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhh
Q 017532 292 AINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGR 357 (370)
Q Consensus 292 ~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~ 357 (370)
........+.......+ +..+++.+..+|++ ....+.|+..|-+..+.. ++...|+..+.+
T Consensus 205 ~l~a~i~ll~qaa~~~~-~~~l~~~~aadPdd---~~aa~~lA~~~~~~g~~e-~Ale~Ll~~l~~ 265 (304)
T COG3118 205 GLQAQIELLEQAAATPE-IQDLQRRLAADPDD---VEAALALADQLHLVGRNE-AALEHLLALLRR 265 (304)
T ss_pred HHHHHHHHHHHHhcCCC-HHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHH-HHHHHHHHHHHh
Confidence 21112233444444444 34566777889987 788888888887655522 333444444443
No 298
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=95.41 E-value=3.5 Score=41.78 Aligned_cols=171 Identities=16% Similarity=0.123 Sum_probs=110.7
Q ss_pred CccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCC-CCH---
Q 017532 135 NRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHL-SSKEYNVCFDLMNESIGRGNG-LDP--- 209 (370)
Q Consensus 135 ~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~~~-~~~--- 209 (370)
..++.+..|+.++...-..+..-.. ..++.....+.+++.+|.+++ ...+++.|..++++++..... .-.
T Consensus 25 ~~~~~l~~Y~kLI~~ai~CL~~~~~-----~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k 99 (608)
T PF10345_consen 25 KSEEQLKQYYKLIATAIKCLEAVLK-----QFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK 99 (608)
T ss_pred CChhhHHHHHHHHHHHHHHHHHHhc-----cCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 4456666777776553333321110 111222233578889999988 889999999999999877642 111
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC--
Q 017532 210 -ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD-- 286 (370)
Q Consensus 210 -~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~-- 286 (370)
...+.+++++.+.+... |...+++.++..... ....+.-...+.....++..+++..|++.++......
T Consensus 100 ~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~-------~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~ 171 (608)
T PF10345_consen 100 FRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETY-------GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQ 171 (608)
T ss_pred HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhcc-------CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhh
Confidence 23467899999998877 999999999766552 1222211112222334434489999999999998764
Q ss_pred CCCHHHH----HHHHHHHHHhCCHHHHHHHHHHHHH
Q 017532 287 YNDIVAI----NNKALCLMYLRDLSDSIKVLENALE 318 (370)
Q Consensus 287 p~~~~~~----~nla~~~~~~g~~~~A~~~l~~al~ 318 (370)
+.++.+. ...+.+..+.+..+++++.+++++.
T Consensus 172 ~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~ 207 (608)
T PF10345_consen 172 RGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIA 207 (608)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Confidence 4555432 3346677788888999999988844
No 299
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.31 E-value=0.31 Score=39.03 Aligned_cols=45 Identities=20% Similarity=0.172 Sum_probs=22.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCH
Q 017532 262 KALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDL 306 (370)
Q Consensus 262 ~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~ 306 (370)
-|.+++..|+|++|+..|+.+.+..+..+..--.++.|+.-+|+.
T Consensus 50 dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 50 DGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred HHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 455555555555555555555444444444444445555554443
No 300
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=95.25 E-value=0.4 Score=47.96 Aligned_cols=117 Identities=15% Similarity=0.000 Sum_probs=67.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHH
Q 017532 178 NCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNL 257 (370)
Q Consensus 178 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~ 257 (370)
-.++..|...|+|+.|.++|-++-. ...-..+|-+.|+++.|.+.-++.. .|+....
T Consensus 769 ~~iadhyan~~dfe~ae~lf~e~~~---------~~dai~my~k~~kw~da~kla~e~~--------------~~e~t~~ 825 (1636)
T KOG3616|consen 769 GEIADHYANKGDFEIAEELFTEADL---------FKDAIDMYGKAGKWEDAFKLAEECH--------------GPEATIS 825 (1636)
T ss_pred hHHHHHhccchhHHHHHHHHHhcch---------hHHHHHHHhccccHHHHHHHHHHhc--------------CchhHHH
Confidence 3556667777888888777765511 1112345666777777766555443 2222234
Q ss_pred HHHhHHHHHHHcCCHHHHHHH-------------HHHH------Hhh----CCCCH-HHHHHHHHHHHHhCCHHHHHHHH
Q 017532 258 VSRNKALIYLVGKDYVSAVRE-------------YEEC------IER----DYNDI-VAINNKALCLMYLRDLSDSIKVL 313 (370)
Q Consensus 258 ~~~~~g~~~~~~g~~~eA~~~-------------~~~~------l~~----~p~~~-~~~~nla~~~~~~g~~~~A~~~l 313 (370)
.++..+.-+-+.|+|.||... |.+. +.+ +|+.. .+.-.+|.-+...|++.+|...|
T Consensus 826 ~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~f 905 (1636)
T KOG3616|consen 826 LYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHF 905 (1636)
T ss_pred HHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHH
Confidence 455556556666666655444 4331 111 22222 45567788888889999888877
Q ss_pred HHHH
Q 017532 314 ENAL 317 (370)
Q Consensus 314 ~~al 317 (370)
-++-
T Consensus 906 lea~ 909 (1636)
T KOG3616|consen 906 LEAG 909 (1636)
T ss_pred Hhhh
Confidence 6653
No 301
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.24 E-value=2.1 Score=40.67 Aligned_cols=148 Identities=13% Similarity=0.039 Sum_probs=90.7
Q ss_pred HHhHHHHHHHH---------HHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH--HH
Q 017532 163 EESVKSWKKRE---------IFVLNCLIGYHLSSKE-YNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGA--KK 230 (370)
Q Consensus 163 ~~~~~~~~~~~---------~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A--~~ 230 (370)
..-..+|.... +.-+..-|.-+.+.|. -++|+++++.+++-.+ .|....+..-..-- ..|..| ..
T Consensus 359 r~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~-yD~ec~n~v~~fvK--q~Y~qaLs~~ 435 (549)
T PF07079_consen 359 RDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTN-YDIECENIVFLFVK--QAYKQALSMH 435 (549)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH--HHHHHHHhhh
Confidence 44566776543 2233344566667777 7889999999999888 66544332111110 011111 11
Q ss_pred HHHHHHHHhh---cCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHH
Q 017532 231 SFNRVEEMLN---EGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLS 307 (370)
Q Consensus 231 ~~~~a~~l~~---~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~ 307 (370)
.+-+.+.+.. +..-....-.+.+ ......-|.-++.+|+|.++..+-.-..++.| .+.++..+|.|++...+|+
T Consensus 436 ~~~rLlkLe~fi~e~gl~~i~i~e~e--ian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~ 512 (549)
T PF07079_consen 436 AIPRLLKLEDFITEVGLTPITISEEE--IANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQ 512 (549)
T ss_pred hHHHHHHHHHHHHhcCCCcccccHHH--HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHH
Confidence 2222222211 1000000011111 11223457788999999999999999999999 8999999999999999999
Q ss_pred HHHHHHHHH
Q 017532 308 DSIKVLENA 316 (370)
Q Consensus 308 ~A~~~l~~a 316 (370)
+|-.++...
T Consensus 513 eA~~~l~~L 521 (549)
T PF07079_consen 513 EAWEYLQKL 521 (549)
T ss_pred HHHHHHHhC
Confidence 999999764
No 302
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.17 E-value=0.16 Score=37.64 Aligned_cols=64 Identities=19% Similarity=0.146 Sum_probs=48.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHHhhcCCccCCccc-hHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017532 218 IQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLS-EVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD 286 (370)
Q Consensus 218 ~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~-~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~ 286 (370)
..++.||+.+|++.+.+.......... .. .... ..+..++|.++...|++++|+..+++++.+-
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~----~~~~~~~-~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNN----SSSNSGL-AYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhccc----chhhHHH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 346789999999998888876554311 11 1123 5678889999999999999999999999773
No 303
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.02 E-value=0.55 Score=42.06 Aligned_cols=67 Identities=13% Similarity=0.098 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 017532 172 REIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEML 239 (370)
Q Consensus 172 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~ 239 (370)
....++..+++.+...|+++.++..+++.+..+| .+...+..+-..|.+.|+...|+..|+++.++.
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~ 217 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTL 217 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Confidence 3467888999999999999999999999999999 999999999999999999999999999998753
No 304
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.79 E-value=4.5 Score=39.74 Aligned_cols=150 Identities=11% Similarity=0.030 Sum_probs=91.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHh
Q 017532 182 GYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRN 261 (370)
Q Consensus 182 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~ 261 (370)
..-...|+++...-.|++.+-.-. .....|..-++.....|+.+-|...+.++.++... ..|. ++..
T Consensus 305 df~i~~g~~~~~~~l~ercli~cA-~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k--------~~~~----i~L~ 371 (577)
T KOG1258|consen 305 DFEITLGDFSRVFILFERCLIPCA-LYDEFWIKYARWMESSGDVSLANNVLARACKIHVK--------KTPI----IHLL 371 (577)
T ss_pred hhhhhcccHHHHHHHHHHHHhHHh-hhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCC--------CCcH----HHHH
Confidence 344456777777777777755433 44566666666666667777777777776655332 1232 2333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHH---HHHHHHHHhCCCcchhHHHHHHHHHHHH
Q 017532 262 KALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSI---KVLENALERVPTVALNETLVVNLCSMYE 338 (370)
Q Consensus 262 ~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~---~~l~~al~~~p~~~~~~~~~~nl~~lye 338 (370)
-+..--..|+++.|..+|++..+.-|....+-...+....+.|..+.+. +.+.....-.-++.+.+...++.+.+.-
T Consensus 372 ~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 372 EARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY 451 (577)
T ss_pred HHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence 4555556677777777777777666777766666666777777777777 3333333332333445666666666666
Q ss_pred hccCCc
Q 017532 339 LAYVNH 344 (370)
Q Consensus 339 l~~~~~ 344 (370)
++.+..
T Consensus 452 ~i~~d~ 457 (577)
T KOG1258|consen 452 KIREDA 457 (577)
T ss_pred HHhcCH
Confidence 555544
No 305
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=94.74 E-value=0.12 Score=46.21 Aligned_cols=61 Identities=8% Similarity=0.177 Sum_probs=48.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017532 177 LNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEM 238 (370)
Q Consensus 177 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l 238 (370)
-...+.-..+.|+-++|..+|+.++...| .++.++...|......+++-+|-.+|-+|+.+
T Consensus 119 Al~~A~~~~~~Gk~ekA~~lfeHAlalaP-~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 119 ALKAAGRSRKDGKLEKAMTLFEHALALAP-TNPQILIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcCC-CCHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence 34555566677888888888888888888 88888888888888778888888888888844
No 306
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.71 E-value=0.93 Score=42.56 Aligned_cols=138 Identities=14% Similarity=-0.021 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--------------CC-----------CCCH---HHHHHHHHHHHHcCCH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGR--------------GN-----------GLDP---ILVSKLGFIQMQVGDL 225 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------------~~-----------~~~~---~~~~~lg~~~~~~g~~ 225 (370)
..++..++.++..+|+++.|..++++++-. +. ..+- .++........+.|-+
T Consensus 40 idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~ 119 (360)
T PF04910_consen 40 IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCW 119 (360)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcH
Confidence 467778899999999999999988888521 11 0111 3345556777889999
Q ss_pred HHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHH
Q 017532 226 EGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYN-----DIVAINNKALCL 300 (370)
Q Consensus 226 ~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~-----~~~~~~nla~~~ 300 (370)
..|.++.+-.+.+.+.. || ..+...+-....+.++|+-=+..++........ -|..-+..|.++
T Consensus 120 rTAlE~~KlLlsLdp~~--------DP---~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~ 188 (360)
T PF04910_consen 120 RTALEWCKLLLSLDPDE--------DP---LGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAY 188 (360)
T ss_pred HHHHHHHHHHHhcCCCC--------Cc---chhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHH
Confidence 99999999999887652 55 334555667777889998888877776553221 235667889999
Q ss_pred HHhCCH---------------HHHHHHHHHHHHhCCC
Q 017532 301 MYLRDL---------------SDSIKVLENALERVPT 322 (370)
Q Consensus 301 ~~~g~~---------------~~A~~~l~~al~~~p~ 322 (370)
...++- ++|.+.+.+|+...|.
T Consensus 189 ~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 189 FRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 999998 8999999999998875
No 307
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=94.57 E-value=0.76 Score=48.89 Aligned_cols=136 Identities=15% Similarity=0.109 Sum_probs=103.7
Q ss_pred HHHHHHhcCCHHHHHH------HHHHHH-hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchH
Q 017532 180 LIGYHLSSKEYNVCFD------LMNESI-GRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEV 252 (370)
Q Consensus 180 la~~~~~~g~~~~A~~------~~~~~l-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p 252 (370)
.+..-...|.+.+|.+ ++.... ...| .....+..+++++.+.|+.++|+..-.++.-+...... ...|
T Consensus 938 ~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~-~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g----~ds~ 1012 (1236)
T KOG1839|consen 938 QGQEALLEDGFSEAYELPESLNLLNNVMGVLHP-EVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLG----KDSP 1012 (1236)
T ss_pred hhhhhhcccchhhhhhhhhhhhHHHHhhhhcch-hHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhcc----CCCH
Confidence 3344445566776666 555333 3344 56677889999999999999999998887654433211 3455
Q ss_pred HHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 017532 253 EFRNLVSRNKALIYLVGKDYVSAVREYEECIER--------DYNDIVAINNKALCLMYLRDLSDSIKVLENALERVP 321 (370)
Q Consensus 253 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~--------~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p 321 (370)
+. ...+.+++...+..++...|...+.++..+ .|......+|++.++...++++.|+++++.|....-
T Consensus 1013 ~t-~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~ 1088 (1236)
T KOG1839|consen 1013 NT-KLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNK 1088 (1236)
T ss_pred HH-HHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 55 788899999999999999999999998876 366667788999999999999999999999998643
No 308
>PF12854 PPR_1: PPR repeat
Probab=94.47 E-value=0.082 Score=30.89 Aligned_cols=30 Identities=10% Similarity=0.140 Sum_probs=25.0
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 017532 287 YNDIVAINNKALCLMYLRDLSDSIKVLENA 316 (370)
Q Consensus 287 p~~~~~~~nla~~~~~~g~~~~A~~~l~~a 316 (370)
+.|..+|+.+..++++.|++++|++.|+++
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 356788888999999999999999988764
No 309
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.43 E-value=0.53 Score=37.70 Aligned_cols=80 Identities=13% Similarity=-0.016 Sum_probs=61.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHH
Q 017532 180 LIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVS 259 (370)
Q Consensus 180 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~ 259 (370)
+...-+..++.+++..++..+--..| ..+..-..-|.+++..|++++|+..|.+..+-. ...| ...
T Consensus 16 ~~~~aL~~~d~~D~e~lLdALrvLrP-~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~---------~~~p----~~k 81 (153)
T TIGR02561 16 VLMYALRSADPYDAQAMLDALRVLRP-NLKELDMFDGWLLIARGNYDEAARILRELLSSA---------GAPP----YGK 81 (153)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCC-CccccchhHHHHHHHcCCHHHHHHHHHhhhccC---------CCch----HHH
Confidence 33444457999999999999999999 888888888999999999999999999987311 1223 223
Q ss_pred HhHHHHHHHcCCHH
Q 017532 260 RNKALIYLVGKDYV 273 (370)
Q Consensus 260 ~~~g~~~~~~g~~~ 273 (370)
-.++.|++.+|+.+
T Consensus 82 AL~A~CL~al~Dp~ 95 (153)
T TIGR02561 82 ALLALCLNAKGDAE 95 (153)
T ss_pred HHHHHHHHhcCChH
Confidence 34788888888743
No 310
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=94.40 E-value=2.5 Score=41.44 Aligned_cols=66 Identities=15% Similarity=0.082 Sum_probs=28.3
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHH-HHhhCCCCHHHHHHH------HHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 258 VSRNKALIYLVGKDYVSAVREYEE-CIERDYNDIVAINNK------ALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 258 ~~~~~g~~~~~~g~~~eA~~~~~~-~l~~~p~~~~~~~nl------a~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
...++|..+...|....+...+.+ +....|++......+ +..+..+|+..++...++++....|++
T Consensus 103 ~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~ 175 (620)
T COG3914 103 AVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKY 175 (620)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhh
Confidence 334444444444444443333333 334444444333333 444444444444444444444444443
No 311
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=94.39 E-value=0.49 Score=33.41 Aligned_cols=64 Identities=11% Similarity=0.066 Sum_probs=51.4
Q ss_pred HHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 256 NLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIV---AINNKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~---~~~nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
+.-.+..|.-++.+.+.++|+..++++++..++.+. ++-.+..+++..|++.+++++--+-+.+
T Consensus 6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567888899999999999999999998776654 5556667899999999999887665544
No 312
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.36 E-value=0.082 Score=45.34 Aligned_cols=61 Identities=23% Similarity=0.274 Sum_probs=53.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 017532 217 FIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI 290 (370)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~ 290 (370)
....+.||.+.|.+.|.+++.+ -|++ ..-|+-+|....+.|+++.|...|++.++++|.+.
T Consensus 3 ~~~~~~~D~~aaaely~qal~l------------ap~w-~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALEL------------APEW-AAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred chhcccCChHHHHHHHHHHhhc------------Cchh-hhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 3456789999999999999954 5566 77889999999999999999999999999999875
No 313
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.33 E-value=4.4 Score=37.55 Aligned_cols=120 Identities=15% Similarity=0.045 Sum_probs=88.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017532 207 LDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD 286 (370)
Q Consensus 207 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~ 286 (370)
.....+...+.+..+.|.++-|...+.++........ ...| .+.+..+.++...|+..+|+..++..+...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~-----~~~~----~v~~e~akllw~~g~~~~Ai~~L~~~~~~~ 214 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSE-----SLLP----RVFLEYAKLLWAQGEQEEAIQKLRELLKCR 214 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCccc-----CCCc----chHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 5567788999999999999999999999886432210 1133 345678999999999999999999988821
Q ss_pred -C-C--------------------------------CHHHHHHHHHHHHHh------CCHHHHHHHHHHHHHhCCCcchh
Q 017532 287 -Y-N--------------------------------DIVAINNKALCLMYL------RDLSDSIKVLENALERVPTVALN 326 (370)
Q Consensus 287 -p-~--------------------------------~~~~~~nla~~~~~~------g~~~~A~~~l~~al~~~p~~~~~ 326 (370)
. . ...++..+|...... +..+++++.|.++++.+|+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--- 291 (352)
T PF02259_consen 215 LSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSW--- 291 (352)
T ss_pred hhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhH---
Confidence 1 0 013445556555556 88999999999999999986
Q ss_pred HHHHHHHHHHHH
Q 017532 327 ETLVVNLCSMYE 338 (370)
Q Consensus 327 ~~~~~nl~~lye 338 (370)
...++.++..+.
T Consensus 292 ~k~~~~~a~~~~ 303 (352)
T PF02259_consen 292 EKAWHSWALFND 303 (352)
T ss_pred HHHHHHHHHHHH
Confidence 566666665554
No 314
>PF13041 PPR_2: PPR repeat family
Probab=94.30 E-value=0.24 Score=31.63 Aligned_cols=45 Identities=20% Similarity=0.107 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQ 219 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~ 219 (370)
.+++.+...+++.|++++|.++|+++.+.+-..+..++..+-..+
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 356788889999999999999999999887667777777665544
No 315
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.08 E-value=1.5 Score=45.60 Aligned_cols=74 Identities=18% Similarity=0.089 Sum_probs=54.1
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Q 017532 257 LVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCS 335 (370)
Q Consensus 257 ~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~ 335 (370)
.+|..+|......|...+|++.|-++ +|+..|.....+..+.|++++-+.++.-+-+....+.+...++|-++.
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAk 1178 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAK 1178 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHH
Confidence 45777788888888888888888775 777778888888888888888888887776665555454555555443
No 316
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.02 E-value=0.75 Score=45.32 Aligned_cols=98 Identities=11% Similarity=0.053 Sum_probs=70.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 017532 215 LGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAIN 294 (370)
Q Consensus 215 lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~ 294 (370)
-|.-.++..+|..++++|...++--+.+ ..+..+ +....+++.||....+.+.|.+.++++-+.+|.++-.-.
T Consensus 360 ~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D------~~~~~F-aK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~ 432 (872)
T KOG4814|consen 360 TAKKLFKMEKYVVSIRFYKLSLKDIISD------NYSDRF-AKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQL 432 (872)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccch------hhhhHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHH
Confidence 3666677888888888888887654432 234445 666677888888888888888888888888888876665
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 295 NKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 295 nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
-.-.+....|.-.+|+....+....
T Consensus 433 ~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 433 LMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhh
Confidence 5556666677777777777665543
No 317
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=93.83 E-value=0.77 Score=33.64 Aligned_cols=46 Identities=13% Similarity=0.016 Sum_probs=37.4
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 017532 193 CFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEML 239 (370)
Q Consensus 193 A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~ 239 (370)
.+..+++.++.+| ++..+.+.+|..+...|++++|++.+-.+++..
T Consensus 7 ~~~al~~~~a~~P-~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 7 DIAALEAALAANP-DDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred cHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3566788888999 999999999999999999999999999888543
No 318
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=93.75 E-value=0.71 Score=40.89 Aligned_cols=73 Identities=19% Similarity=0.165 Sum_probs=65.0
Q ss_pred hHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 251 EVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 251 ~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
+.+.......++=..+...++++.|...-++.+.++|.++.-+.-.|.+|.+.|-+.-|++.++..++..|+.
T Consensus 176 ~~~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~ 248 (269)
T COG2912 176 NREILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDD 248 (269)
T ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCc
Confidence 3333355566677788899999999999999999999999999999999999999999999999999999987
No 319
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.74 E-value=0.86 Score=35.85 Aligned_cols=79 Identities=14% Similarity=0.111 Sum_probs=59.2
Q ss_pred HHHHHhHHHHHHHcCC---HHHHHHHHHHHHh-hCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHH
Q 017532 256 NLVSRNKALIYLVGKD---YVSAVREYEECIE-RDYND-IVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLV 330 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~---~~eA~~~~~~~l~-~~p~~-~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~ 330 (370)
....++++.++....+ ..+.+.+++..++ -+|.. ....+.+|+.+++.|+|++++.+++..++..|++ .++.
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n---~Qa~ 108 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN---RQAL 108 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc---HHHH
Confidence 3455667777776554 5568999999997 44543 3677889999999999999999999999999987 5444
Q ss_pred HHHHHHH
Q 017532 331 VNLCSMY 337 (370)
Q Consensus 331 ~nl~~ly 337 (370)
---.+++
T Consensus 109 ~Lk~~ie 115 (149)
T KOG3364|consen 109 ELKETIE 115 (149)
T ss_pred HHHHHHH
Confidence 4333443
No 320
>PF13041 PPR_2: PPR repeat family
Probab=93.60 E-value=0.32 Score=31.02 Aligned_cols=35 Identities=14% Similarity=0.165 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 289 DIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 289 ~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
|..+|+.+-..+.+.|++++|.+.|+++.+..-.+
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P 36 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKP 36 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC
Confidence 34566666666667777777777777666654433
No 321
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.48 E-value=0.72 Score=44.51 Aligned_cols=101 Identities=19% Similarity=0.269 Sum_probs=57.7
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHH
Q 017532 184 HLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKA 263 (370)
Q Consensus 184 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g 263 (370)
.++.|+.+.|.++.++. +++..|..||...+..|+++-|+++|+++-. . -.+.
T Consensus 328 Al~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------------~-------~~L~ 380 (443)
T PF04053_consen 328 ALQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD--------------F-------SGLL 380 (443)
T ss_dssp HHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------------H-------HHHH
T ss_pred HHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------------c-------cccH
Confidence 34457777776654432 5677788888888888888888888877742 1 1256
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 017532 264 LIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENA 316 (370)
Q Consensus 264 ~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~a 316 (370)
++|...|+-+.=.+.-+.+....- ++-.-.+++.+|+.++.++.+.+.
T Consensus 381 lLy~~~g~~~~L~kl~~~a~~~~~-----~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 381 LLYSSTGDREKLSKLAKIAEERGD-----INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHTT------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhCCHHHHHHHHHHHHHccC-----HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 667777775443333333222211 122235666777887777777653
No 322
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.44 E-value=2.6 Score=40.05 Aligned_cols=129 Identities=16% Similarity=0.176 Sum_probs=87.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH------HHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCcc
Q 017532 176 VLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILV------SKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLL 249 (370)
Q Consensus 176 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~------~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~ 249 (370)
++..-|-++.+.+++++|..+|.++..... +.+..+ ..+-+.| -+++++.-........+..+..
T Consensus 8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~-~~~f~lkeEvl~grilnAf-fl~nld~Me~~l~~l~~~~~~s------- 78 (549)
T PF07079_consen 8 LLCFQGFILQKQKKFQESEKIFSKIYDEKE-SSPFLLKEEVLGGRILNAF-FLNNLDLMEKQLMELRQQFGKS------- 78 (549)
T ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHhh-cchHHHHHHHHhhHHHHHH-HHhhHHHHHHHHHHHHHhcCCc-------
Confidence 445567788899999999999999987665 443332 2222333 3566666655555555433321
Q ss_pred chHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh----CCC-----------CHHHHHHHHHHHHHhCCHHHHHHHHH
Q 017532 250 SEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIER----DYN-----------DIVAINNKALCLMYLRDLSDSIKVLE 314 (370)
Q Consensus 250 ~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~----~p~-----------~~~~~~nla~~~~~~g~~~~A~~~l~ 314 (370)
.....-.|...+++|+|.+|+..+..--+. .|. +...-+..|.|+..+|++.+++..++
T Consensus 79 ------~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn 152 (549)
T PF07079_consen 79 ------AYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILN 152 (549)
T ss_pred ------hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 334455899999999999999887665443 111 11223457889999999999999999
Q ss_pred HHHHh
Q 017532 315 NALER 319 (370)
Q Consensus 315 ~al~~ 319 (370)
+.+..
T Consensus 153 ~i~~~ 157 (549)
T PF07079_consen 153 RIIER 157 (549)
T ss_pred HHHHH
Confidence 98865
No 323
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=93.36 E-value=3.4 Score=36.54 Aligned_cols=85 Identities=15% Similarity=0.075 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCC------CCHHHHHHHHHH
Q 017532 226 EGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDY------NDIVAINNKALC 299 (370)
Q Consensus 226 ~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p------~~~~~~~nla~~ 299 (370)
...++.+++|....... ...-....+...+|..|+..|++++|++.|+.+....- -...+...+..|
T Consensus 155 ~~iI~lL~~A~~~f~~~-------~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~C 227 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKY-------GQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLEC 227 (247)
T ss_pred HHHHHHHHHHHHHHHHh-------ccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 35566777776655442 11222356667899999999999999999999965522 122456678889
Q ss_pred HHHhCCHHHHHHHHHHHH
Q 017532 300 LMYLRDLSDSIKVLENAL 317 (370)
Q Consensus 300 ~~~~g~~~~A~~~l~~al 317 (370)
+...|+.++.+.+.-+++
T Consensus 228 a~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 228 AKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHhCCHHHHHHHHHHHh
Confidence 999999998888776554
No 324
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.16 E-value=0.14 Score=27.81 Aligned_cols=23 Identities=17% Similarity=0.172 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 017532 211 LVSKLGFIQMQVGDLEGAKKSFN 233 (370)
Q Consensus 211 ~~~~lg~~~~~~g~~~~A~~~~~ 233 (370)
+.+.+|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45566777777777777766654
No 325
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.00 E-value=3.4 Score=36.63 Aligned_cols=215 Identities=13% Similarity=0.156 Sum_probs=123.0
Q ss_pred hhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCcccchhHHHHHHH--cCcccCCccchHHHHHHHHHHHHHHHHH
Q 017532 79 KLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAV--LPIKLSNRQVGLDRFYELLDFVREKLAR 156 (370)
Q Consensus 79 ~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~--~~~~~g~~~~al~~l~~ll~~~~~~~~~ 156 (370)
+....++|+.-|.++.++.. +-..|.+..+..- +.+++|+..+-++++.+++...+..+..
T Consensus 39 ~e~~p~~Al~sF~kVlelEg-----------------EKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTr 101 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEG-----------------EKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTR 101 (440)
T ss_pred cccCHHHHHHHHHHHHhccc-----------------ccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc
Confidence 34589999999999977752 2244666666543 3478899999999999988776666532
Q ss_pred HhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017532 157 KLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVE 236 (370)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~ 236 (370)
.-.+ ..++....-. .+-.+++ +.+.=|+..+..++.+.... --..+-..||.+|+..|++.+-.+.+.+.-
T Consensus 102 NySE---KsIN~IlDyi-StS~~m~---LLQ~FYeTTL~ALkdAKNeR--LWFKTNtKLgkl~fd~~e~~kl~KIlkqLh 172 (440)
T KOG1464|consen 102 NYSE---KSINSILDYI-STSKNMD---LLQEFYETTLDALKDAKNER--LWFKTNTKLGKLYFDRGEYTKLQKILKQLH 172 (440)
T ss_pred cccH---HHHHHHHHHH-hhhhhhH---HHHHHHHHHHHHHHhhhcce--eeeeccchHhhhheeHHHHHHHHHHHHHHH
Confidence 2111 1111110000 0000000 00122333444444432111 111233678999999999999888888887
Q ss_pred HHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHH----HHHHHHHHHHhCCHHHHH
Q 017532 237 EMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYN--DIVA----INNKALCLMYLRDLSDSI 310 (370)
Q Consensus 237 ~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~--~~~~----~~nla~~~~~~g~~~~A~ 310 (370)
..|....+.+........ -+++...-..|-.+.+..+-...|++++.+... +|.. .-.=|..+++.|++++|-
T Consensus 173 ~SCq~edGedD~kKGtQL-LEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~Ah 251 (440)
T KOG1464|consen 173 QSCQTEDGEDDQKKGTQL-LEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAH 251 (440)
T ss_pred HHhccccCchhhhccchh-hhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHH
Confidence 776654321111111112 344444556666777777777789999887532 2221 112245678889999998
Q ss_pred HHHHHHHHhC
Q 017532 311 KVLENALERV 320 (370)
Q Consensus 311 ~~l~~al~~~ 320 (370)
..|=+|.+..
T Consensus 252 TDFFEAFKNY 261 (440)
T KOG1464|consen 252 TDFFEAFKNY 261 (440)
T ss_pred hHHHHHHhcc
Confidence 8887877653
No 326
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.58 E-value=4.5 Score=36.69 Aligned_cols=108 Identities=12% Similarity=0.073 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CC-C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCc
Q 017532 171 KREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRG-NG-L----DPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKF 244 (370)
Q Consensus 171 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~-~----~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~ 244 (370)
+....+...||.+|-+.++|..|-..+.-+-... +. . .......+|++|+..||..+|..+..++--+...
T Consensus 100 Eqv~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~--- 176 (399)
T KOG1497|consen 100 EQVASIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAE--- 176 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhc---
Confidence 3345667789999999999999998877552222 20 1 1244578999999999999999999997644333
Q ss_pred cCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh
Q 017532 245 EDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIER 285 (370)
Q Consensus 245 ~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~ 285 (370)
..++........-.+.++-..++|-||...|-+....
T Consensus 177 ----~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~~ 213 (399)
T KOG1497|consen 177 ----SSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQR 213 (399)
T ss_pred ----ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2355554444555677778889999998888776543
No 327
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=92.47 E-value=0.97 Score=34.29 Aligned_cols=72 Identities=22% Similarity=0.243 Sum_probs=55.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhCC-----------HHHHHHHHHHHHHhCCCcchhH
Q 017532 262 KALIYLVGKDYVSAVREYEECIERDYNDI---VAINNKALCLMYLRD-----------LSDSIKVLENALERVPTVALNE 327 (370)
Q Consensus 262 ~g~~~~~~g~~~eA~~~~~~~l~~~p~~~---~~~~nla~~~~~~g~-----------~~~A~~~l~~al~~~p~~~~~~ 327 (370)
++.-++..|++-+|++..+.++..++++. ..+.--|.++.++.. +-.+++.+.+++.+.|.. .
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~---A 78 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDS---A 78 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhH---H
Confidence 46778899999999999999999987765 455556666654433 557889999999999876 6
Q ss_pred HHHHHHHHH
Q 017532 328 TLVVNLCSM 336 (370)
Q Consensus 328 ~~~~nl~~l 336 (370)
..+|+|+.-
T Consensus 79 ~~L~~la~~ 87 (111)
T PF04781_consen 79 HSLFELASQ 87 (111)
T ss_pred HHHHHHHHH
Confidence 666777654
No 328
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=92.42 E-value=0.26 Score=29.60 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=19.0
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHhh
Q 017532 258 VSRNKALIYLVGKDYVSAVREYEECIER 285 (370)
Q Consensus 258 ~~~~~g~~~~~~g~~~eA~~~~~~~l~~ 285 (370)
++..+|.+.+..++|++|+..|++++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3455677777777777777777777654
No 329
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=92.29 E-value=4.4 Score=39.07 Aligned_cols=65 Identities=9% Similarity=-0.014 Sum_probs=54.2
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCCCc
Q 017532 259 SRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRD-LSDSIKVLENALERVPTV 323 (370)
Q Consensus 259 ~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~-~~~A~~~l~~al~~~p~~ 323 (370)
|.+...-..+.+.+.+--+.|.+++..+|+++..|...|.-.+.-+. .+.|...|.++++.+|+.
T Consensus 108 W~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npds 173 (568)
T KOG2396|consen 108 WLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDS 173 (568)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCC
Confidence 44444444445558999999999999999999999999988887666 999999999999999986
No 330
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=92.28 E-value=13 Score=37.10 Aligned_cols=16 Identities=13% Similarity=0.123 Sum_probs=10.1
Q ss_pred HHHHHhcCCHHHHHHH
Q 017532 181 IGYHLSSKEYNVCFDL 196 (370)
Q Consensus 181 a~~~~~~g~~~~A~~~ 196 (370)
++.+...|+.++|+.+
T Consensus 710 AEmLiSaGe~~KAi~i 725 (1081)
T KOG1538|consen 710 AEMLISAGEHVKAIEI 725 (1081)
T ss_pred HHHhhcccchhhhhhh
Confidence 4455666777777664
No 331
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=92.27 E-value=0.85 Score=40.73 Aligned_cols=64 Identities=19% Similarity=0.124 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEM 238 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l 238 (370)
...+...+..|...|.+.+|+++.++++..+| -+...+..+-+++..+||--+|+++|++..+.
T Consensus 279 ~kllgkva~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyerya~v 342 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERYAEV 342 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHHHHH
Confidence 34455666788899999999999999999999 88888999999999999999999999997654
No 332
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=92.09 E-value=3.9 Score=37.36 Aligned_cols=124 Identities=13% Similarity=-0.004 Sum_probs=75.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCc------------cCCccchHHHH
Q 017532 188 KEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKF------------EDGLLSEVEFR 255 (370)
Q Consensus 188 g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~------------~~~~~~~p~~~ 255 (370)
.+..+-+..-..+++++| .-..++..|+. ...--+.+|++.|+++++....... +.....|.+..
T Consensus 198 Rnp~~RI~~A~~ALeIN~-eCA~AyvLLAE--EEa~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl 274 (556)
T KOG3807|consen 198 RNPPARIKAAYQALEINN-ECATAYVLLAE--EEATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVL 274 (556)
T ss_pred cCcHHHHHHHHHHHhcCc-hhhhHHHhhhh--hhhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchh
Confidence 555666667777888887 66666655543 2233456777777777654322100 00011223333
Q ss_pred HHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHhCCHHHHHHHHH
Q 017532 256 NLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI--VAINNKALCLMYLRDLSDSIKVLE 314 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~--~~~~nla~~~~~~g~~~~A~~~l~ 314 (370)
..+...+++|..++|+..||++.|+...+..|--. .+.-|+-.+++...-|.+....+-
T Consensus 275 ~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLa 335 (556)
T KOG3807|consen 275 VYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLA 335 (556)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666789999999999999999999887777322 345567777766655544444443
No 333
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=92.06 E-value=0.56 Score=42.09 Aligned_cols=62 Identities=21% Similarity=0.124 Sum_probs=51.7
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHh
Q 017532 275 AVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYEL 339 (370)
Q Consensus 275 A~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel 339 (370)
|..+|.+|+.+.|.+...|+.+|++....|+.-+|+-+|-+++-..--+ ..+.-||..+++.
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf---~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPF---PSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB-----HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHH
Confidence 6889999999999999999999999999999999999999998654323 7788899988885
No 334
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=91.98 E-value=9.6 Score=34.79 Aligned_cols=103 Identities=13% Similarity=0.150 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCc
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGN--GLDPILV---SKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGL 248 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~--~~~~~~~---~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~ 248 (370)
.+++...++.|++.||-+.|.+.+.+..+..- +...+.. ..+|..| +|.+--.+..++|-.+...
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy---~D~~lV~~~iekak~liE~------- 173 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFY---LDHDLVTESIEKAKSLIEE------- 173 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHh-------
Confidence 46677899999999999999999888765443 1122233 4445544 4444444455555554444
Q ss_pred cchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017532 249 LSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD 286 (370)
Q Consensus 249 ~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~ 286 (370)
..|.+-+.......|.-.+.-.+|.+|-..|-.++..-
T Consensus 174 GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 174 GGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred CCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccc
Confidence 22333333344558999999999999999999887664
No 335
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=91.93 E-value=4.9 Score=36.00 Aligned_cols=133 Identities=11% Similarity=0.102 Sum_probs=81.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccch
Q 017532 179 CLIGYHLSSKEYNVCFDLMNESIGRGNG-------LDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSE 251 (370)
Q Consensus 179 ~la~~~~~~g~~~~A~~~~~~~l~~~~~-------~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~ 251 (370)
.+++-..+.+++++|+..|.+++..+-. ....+...++.+|...|++..--+.....-+...+ ...
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~-------ftk 80 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMED-------FTK 80 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHH-------hcc
Confidence 4555667779999999999999987541 23356788999999999987655554444333222 112
Q ss_pred HHHHHHHH-HhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 252 VEFRNLVS-RNKALIYLVGKDYVSAVREYEECIERDYNDI------VAINNKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 252 p~~~~~~~-~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~------~~~~nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
|.. +.+. ...-..-.....++.-++.++..++---..- ..-..++.++++.|+|.+|+......+..
T Consensus 81 ~k~-~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~E 154 (421)
T COG5159 81 PKI-TKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHE 154 (421)
T ss_pred hhH-HHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 222 1111 1111222234556666666666655421111 22345778899999999999998877654
No 336
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.85 E-value=0.22 Score=26.97 Aligned_cols=22 Identities=23% Similarity=0.151 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHH
Q 017532 292 AINNKALCLMYLRDLSDSIKVL 313 (370)
Q Consensus 292 ~~~nla~~~~~~g~~~~A~~~l 313 (370)
+..++|.++...|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 3444555555555555555444
No 337
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.67 E-value=3 Score=35.39 Aligned_cols=80 Identities=19% Similarity=0.011 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHH
Q 017532 188 KEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYL 267 (370)
Q Consensus 188 g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~ 267 (370)
-.-++|...|-++-....-+++.+.+.||..|. .-|.++|+..+.+++++.+.. ...+|+ +...++.+++
T Consensus 120 ~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~-----~~~n~e----il~sLas~~~ 189 (203)
T PF11207_consen 120 FGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPD-----DNFNPE----ILKSLASIYQ 189 (203)
T ss_pred cCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCC-----CCCCHH----HHHHHHHHHH
Confidence 355678887777765555578899999998777 578899999999999886552 145554 4677899999
Q ss_pred HcCCHHHHHH
Q 017532 268 VGKDYVSAVR 277 (370)
Q Consensus 268 ~~g~~~eA~~ 277 (370)
.+|++++|.-
T Consensus 190 ~~~~~e~AYi 199 (203)
T PF11207_consen 190 KLKNYEQAYI 199 (203)
T ss_pred Hhcchhhhhh
Confidence 9999999853
No 338
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=91.67 E-value=7 Score=36.10 Aligned_cols=120 Identities=10% Similarity=-0.035 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHc
Q 017532 190 YNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVG 269 (370)
Q Consensus 190 ~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~ 269 (370)
.+.-+.+|++|++.+| ++..++...-....+..+.++..+-+++++...+. .+.+ -..++..-...+..
T Consensus 47 ~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~---------~~~L-W~~yL~~~q~~~~~ 115 (321)
T PF08424_consen 47 AERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG---------SPEL-WREYLDFRQSNFAS 115 (321)
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC---------ChHH-HHHHHHHHHHHhcc
Confidence 4566889999999999 99988888888888888989989999999864322 2222 11222222222233
Q ss_pred CCHHHHHHHHHHHHhhC------C-----C-------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 017532 270 KDYVSAVREYEECIERD------Y-----N-------DIVAINNKALCLMYLRDLSDSIKVLENALERV 320 (370)
Q Consensus 270 g~~~eA~~~~~~~l~~~------p-----~-------~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~ 320 (370)
-.+++....|.+++..- . . -..++.+++.-+...|..+.|+..++..++.+
T Consensus 116 f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 116 FTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred CcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 35777777887777551 0 0 11355677778889999999999999999985
No 339
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.58 E-value=16 Score=36.51 Aligned_cols=98 Identities=11% Similarity=0.056 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCcc
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGL-----DPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLL 249 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~ 249 (370)
.++.+-|.-+++.++|..+++.|...+...+.+ .......++.+|+.+.++|.|.+++++|.+..+.+
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~------- 427 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQS------- 427 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccc-------
Confidence 445567788999999999999999999887722 23556788999999999999999999999754432
Q ss_pred chHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh
Q 017532 250 SEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIER 285 (370)
Q Consensus 250 ~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~ 285 (370)
| + ...+ .-.+....|.-++|+.........
T Consensus 428 --~-l-~q~~--~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 428 --P-L-CQLL--MLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred --H-H-HHHH--HHHHHHHhcchHHHHHHHHHHHhh
Confidence 1 1 2223 444555788889998888777654
No 340
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=91.57 E-value=3.7 Score=32.41 Aligned_cols=74 Identities=15% Similarity=0.100 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh
Q 017532 209 PILVSKLGFIQMQVGD---LEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIER 285 (370)
Q Consensus 209 ~~~~~~lg~~~~~~g~---~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~ 285 (370)
....+++++++....+ ..+.+..++...+ . .+|+-+.+-.+.++..+++.|+|+.|+.+.+..++.
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~--~---------~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLK--S---------AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhh--h---------cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 4455666777766544 4456666666663 1 122222344556788888888888888888888888
Q ss_pred CCCCHHHH
Q 017532 286 DYNDIVAI 293 (370)
Q Consensus 286 ~p~~~~~~ 293 (370)
+|+|..+.
T Consensus 101 e~~n~Qa~ 108 (149)
T KOG3364|consen 101 EPNNRQAL 108 (149)
T ss_pred CCCcHHHH
Confidence 88877654
No 341
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=91.56 E-value=0.68 Score=27.41 Aligned_cols=30 Identities=17% Similarity=0.041 Sum_probs=19.8
Q ss_pred HHhHHHHHHHcCCHHHHHHH--HHHHHhhCCC
Q 017532 259 SRNKALIYLVGKDYVSAVRE--YEECIERDYN 288 (370)
Q Consensus 259 ~~~~g~~~~~~g~~~eA~~~--~~~~l~~~p~ 288 (370)
+..+|..+..+|++++|+.. |+-+..++|.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 45567777778888888877 4466666654
No 342
>PF12854 PPR_1: PPR repeat
Probab=91.56 E-value=0.36 Score=28.10 Aligned_cols=30 Identities=23% Similarity=0.245 Sum_probs=23.0
Q ss_pred CchHHHHHHHHHHHHHhhhcCHHHHHHHhhhc
Q 017532 62 QPHHHLTYLAYNTLALMKLRRFDEAQQELDSL 93 (370)
Q Consensus 62 ~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~ 93 (370)
.|+ ...|+..+.++|+.|+.++|.+.+++|
T Consensus 4 ~Pd--~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 4 EPD--VVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCc--HhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 355 344455588999999999999998876
No 343
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.51 E-value=15 Score=35.94 Aligned_cols=188 Identities=16% Similarity=0.051 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHhh
Q 017532 169 WKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQ--------VGDLEGAKKSFNRVEEMLN 240 (370)
Q Consensus 169 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~--------~g~~~~A~~~~~~a~~l~~ 240 (370)
|++-..-.++.++-++....+|..|...+..+.....+.+....+..|.++++ .|+-++|..+++....+..
T Consensus 298 ~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~ 377 (546)
T KOG3783|consen 298 MKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLA 377 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 44444455667777777788888888888888877765555444555666644 3466667666666544432
Q ss_pred c---CCc-------------cCC-----ccch-HHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHH-HHHHH
Q 017532 241 E---GKF-------------EDG-----LLSE-VEFRNLVSRNKALIYLVGKDYVSAVREYEECIER-DYNDIV-AINNK 296 (370)
Q Consensus 241 ~---~~~-------------~~~-----~~~~-p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~-~p~~~~-~~~nl 296 (370)
. +.. ... .... |-. ..+++..|.--+...+..++...++ .-+. ++++.- -+..+
T Consensus 378 ~a~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~-El~Y~Wngf~~~s~~~l~k~~~~~~-~~~~~d~Dd~~lk~lL~ 455 (546)
T KOG3783|consen 378 NAGKNLPLEKFIVRKVERFVKRGPLNASILLASPYY-ELAYFWNGFSRMSKNELEKMRAELE-NPKIDDSDDEGLKYLLK 455 (546)
T ss_pred hccccCchhHHHHHHHHHHhccccccccccccchHH-HHHHHHhhcccCChhhHHHHHHHHh-ccCCCCchHHHHHHHHH
Confidence 2 100 000 0000 222 2333333433333333332222222 2222 444443 34456
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHh----CCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhC
Q 017532 297 ALCLMYLRDLSDSIKVLENALER----VPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVA 359 (370)
Q Consensus 297 a~~~~~~g~~~~A~~~l~~al~~----~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~ 359 (370)
|.++..+|+...|..++...++. .-+......++|.++.+|.-..+ .....+++|.+-+.+.
T Consensus 456 g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g-~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 456 GVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGG-GLKEARALLLKAREYA 521 (546)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhccc-ChHHHHHHHHHHHhhc
Confidence 77777788777777777776632 11222345677777777763333 4566666666654444
No 344
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.39 E-value=8.5 Score=34.09 Aligned_cols=137 Identities=15% Similarity=0.136 Sum_probs=98.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHH
Q 017532 186 SSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLE-GAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKAL 264 (370)
Q Consensus 186 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~-~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~ 264 (370)
-+.+..+-+.++.+++..+| .+...|...-.+....|++. .-.+....++.. +... -.+|..+--
T Consensus 90 l~~dL~~El~~l~eI~e~np-KNYQvWHHRr~ive~l~d~s~rELef~~~~l~~------------DaKN-YHaWshRqW 155 (318)
T KOG0530|consen 90 LMSDLNKELEYLDEIIEDNP-KNYQVWHHRRVIVELLGDPSFRELEFTKLMLDD------------DAKN-YHAWSHRQW 155 (318)
T ss_pred hHHHHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHhcCcccchHHHHHHHHhc------------cccc-hhhhHHHHH
Confidence 34567777888888888888 88888877777777788877 666777777741 2222 345556677
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-hC-----CHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Q 017532 265 IYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMY-LR-----DLSDSIKVLENALERVPTVALNETLVVNLCSMYE 338 (370)
Q Consensus 265 ~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~-~g-----~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lye 338 (370)
+...-+.|+.-+.+..++++.|--|-.+|+.+=-+... .| ..+.=+.+..+.|...|.+ ++.+-.|+-+++
T Consensus 156 ~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~N---eSaWnYL~G~l~ 232 (318)
T KOG0530|consen 156 VLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNN---ESAWNYLKGLLE 232 (318)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCC---ccHHHHHHHHHH
Confidence 77777789999999999998887777777765433322 22 2445567778888899988 888888888887
Q ss_pred h
Q 017532 339 L 339 (370)
Q Consensus 339 l 339 (370)
+
T Consensus 233 ~ 233 (318)
T KOG0530|consen 233 L 233 (318)
T ss_pred h
Confidence 6
No 345
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.31 E-value=1.4 Score=39.58 Aligned_cols=64 Identities=14% Similarity=-0.016 Sum_probs=58.5
Q ss_pred HHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 256 NLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
..++..++..+...|+++.+++.+++.+..+|-+...|..+-.+|+..|+...|+..|+++-+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 4556668888899999999999999999999999999999999999999999999999988763
No 346
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=91.14 E-value=11 Score=34.81 Aligned_cols=111 Identities=13% Similarity=-0.082 Sum_probs=75.5
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhH
Q 017532 195 DLMNESIGRGNGLDPILVSKLGFIQMQVGD------------LEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNK 262 (370)
Q Consensus 195 ~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~------------~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~ 262 (370)
.-+++.++.+| .+..+|..+....-..-. .+.-+..|++|++..++ +. ..+..+
T Consensus 6 ~el~~~v~~~P-~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~---------~~----~L~l~~ 71 (321)
T PF08424_consen 6 AELNRRVRENP-HDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPD---------SE----RLLLGY 71 (321)
T ss_pred HHHHHHHHhCc-ccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCC---------CH----HHHHHH
Confidence 45778888999 999998777765544322 46778889999965322 22 223333
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHh
Q 017532 263 ALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMY---LRDLSDSIKVLENALER 319 (370)
Q Consensus 263 g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~---~g~~~~A~~~l~~al~~ 319 (370)
=.+..+..+.++..+.+++++..+|++...|..+-..... .-.+++....|.+++..
T Consensus 72 l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~ 131 (321)
T PF08424_consen 72 LEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRA 131 (321)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence 3344566788888999999999999999887655433322 34577778888777765
No 347
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=91.10 E-value=1.6 Score=46.69 Aligned_cols=140 Identities=14% Similarity=0.084 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccC
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGN-------GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFED 246 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~ 246 (370)
...+..++.++.+.|++++|+..-+++.-+.. ......+.+++...+..+....|...+.++..+..-...
T Consensus 973 ~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~g-- 1050 (1236)
T KOG1839|consen 973 ASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSG-- 1050 (1236)
T ss_pred HHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccC--
Confidence 45667888999999999999998777743332 133345677787888888999999999999887654322
Q ss_pred CccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC-----CC---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 017532 247 GLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD-----YN---DIVAINNKALCLMYLRDLSDSIKVLENALE 318 (370)
Q Consensus 247 ~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~-----p~---~~~~~~nla~~~~~~g~~~~A~~~l~~al~ 318 (370)
...|.. +.+..+++.++...++++.|+.+.+.+++.+ |. +...+..++....-.+++..|.........
T Consensus 1051 --e~hP~~-a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1051 --EDHPPT-ALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred --CCCCch-hhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 356666 7777889999999999999999999999864 22 223445555555556666665555544443
No 348
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=91.08 E-value=11 Score=35.42 Aligned_cols=106 Identities=12% Similarity=0.012 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCcc
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGN-----GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLL 249 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~ 249 (370)
..++-+..++-..|+...-...+...+.... .....+.+.|-+.|+..+.++.|.+...+..- |.. .
T Consensus 170 k~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~--pe~------~ 241 (493)
T KOG2581|consen 170 KLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVY--PEA------A 241 (493)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccC--ccc------c
Confidence 4445555566666776555555555543322 23345567777888888888888877776651 221 2
Q ss_pred chHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 017532 250 SEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYND 289 (370)
Q Consensus 250 ~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~ 289 (370)
.+.++ +.-.+.+|.+...+++|..|.++|-+++...|++
T Consensus 242 snne~-ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 242 SNNEW-ARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred ccHHH-HHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 23344 5666678888888888888888888888888864
No 349
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=90.69 E-value=1.3 Score=42.01 Aligned_cols=62 Identities=13% Similarity=0.125 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017532 176 VLNCLIGYHLSSKEYNVCFDLMNESIG-------RGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEE 237 (370)
Q Consensus 176 ~~~~la~~~~~~g~~~~A~~~~~~~l~-------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~ 237 (370)
.+..|..+++..|||..|+..++.+-- .-|..+..+++.+|.+|+-+++|.+|+..|...+-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444667788899999999999887621 11224567789999999999999999999999874
No 350
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=90.55 E-value=5.1 Score=38.75 Aligned_cols=105 Identities=15% Similarity=0.090 Sum_probs=71.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHH
Q 017532 177 LNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRN 256 (370)
Q Consensus 177 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~ 256 (370)
...++..+.++|-++.|+.+. .|+...+. +.++.|+++.|.+..++.. + .
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~---------~D~~~rFe---LAl~lg~L~~A~~~a~~~~--------------~----~ 347 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFV---------TDPDHRFE---LALQLGNLDIALEIAKELD--------------D----P 347 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHS---------S-HHHHHH---HHHHCT-HHHHHHHCCCCS--------------T----H
T ss_pred HHHHHHHHHHCCCHHHHHhhc---------CChHHHhH---HHHhcCCHHHHHHHHHhcC--------------c----H
Confidence 346677788889999998873 55555555 4568999988776554332 3 3
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 257 LVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 257 ~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
..|..+|...+.+|+++-|.++|+++- + +..+...|.-.|+-+.-.+..+.+...
T Consensus 348 ~~W~~Lg~~AL~~g~~~lAe~c~~k~~-----d---~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 348 EKWKQLGDEALRQGNIELAEECYQKAK-----D---FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhc-----C---ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 358889999999999999999999862 2 234666777788876655555555443
No 351
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=90.48 E-value=2.7 Score=37.34 Aligned_cols=67 Identities=16% Similarity=0.186 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNE 241 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~ 241 (370)
.+...++=..+.+.++++.|....++.+..+| .++.-+.-.|.+|.++|.+.-|++.++..++.+++
T Consensus 181 ~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P-~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~ 247 (269)
T COG2912 181 SRLLRNLKAALLRELQWELALRVAERLLDLNP-EDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPD 247 (269)
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHhhCC-CChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCC
Confidence 45556666788889999999999999999999 88888888999999999999999999998887776
No 352
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=90.37 E-value=5.8 Score=39.89 Aligned_cols=65 Identities=12% Similarity=0.042 Sum_probs=47.7
Q ss_pred hHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh----------------------CCCCHHHHHHHHHHHHHhCCHHH
Q 017532 251 EVEFRNLVSRNKALIYLVGKDYVSAVREYEECIER----------------------DYNDIVAINNKALCLMYLRDLSD 308 (370)
Q Consensus 251 ~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~----------------------~p~~~~~~~nla~~~~~~g~~~~ 308 (370)
+......++.++|..+..+-.|++|.++|.+.-.. -|++...+--+|.++..-|--++
T Consensus 791 dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~q 870 (1189)
T KOG2041|consen 791 DDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQ 870 (1189)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHH
Confidence 33334889999999999999999999999875221 25666666667777777777777
Q ss_pred HHHHHHH
Q 017532 309 SIKVLEN 315 (370)
Q Consensus 309 A~~~l~~ 315 (370)
|++.+-+
T Consensus 871 AV~a~Lr 877 (1189)
T KOG2041|consen 871 AVEAYLR 877 (1189)
T ss_pred HHHHHHh
Confidence 7776654
No 353
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.25 E-value=17 Score=34.58 Aligned_cols=73 Identities=10% Similarity=-0.017 Sum_probs=48.6
Q ss_pred CCCCCCCccccccCCCCCcCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHH
Q 017532 10 NPSRFTDPLTNAFGSLNDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQ 87 (370)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~ 87 (370)
|--+.-.|-|-+. +..|. ++..|..+|++|..+.+.-+|+++.+.+....|. +..-.+++.++....+.--|.
T Consensus 100 P~l~~F~P~~l~~--~~~V~-~E~nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~k--vq~~L~~LV~~~Ns~~~~~~E 172 (625)
T KOG4422|consen 100 PQLPVFRPRHLAD--PLQVE-TENNLLKMISSREVKDSCILYERMRSENVDVSEK--VQLELFRLVTYYNSSNVPFAE 172 (625)
T ss_pred ccccccCchhcCC--chhhc-chhHHHHHHhhcccchhHHHHHHHHhcCCCCCHH--HHHHHHHHHHhhcCCCCcchh
Confidence 3333445544443 56666 8899999999999999999999998766333332 333345677777666665443
No 354
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=90.12 E-value=5 Score=39.95 Aligned_cols=15 Identities=7% Similarity=0.087 Sum_probs=7.3
Q ss_pred HcCcccCCccchHHH
Q 017532 128 VLPIKLSNRQVGLDR 142 (370)
Q Consensus 128 ~~~~~~g~~~~al~~ 142 (370)
++....|+.+.|++.
T Consensus 711 EmLiSaGe~~KAi~i 725 (1081)
T KOG1538|consen 711 EMLISAGEHVKAIEI 725 (1081)
T ss_pred HHhhcccchhhhhhh
Confidence 333445555555543
No 355
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=90.10 E-value=3.1 Score=29.43 Aligned_cols=60 Identities=8% Similarity=-0.093 Sum_probs=45.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 017532 180 LIGYHLSSKEYNVCFDLMNESIGRGNGLDPI---LVSKLGFIQMQVGDLEGAKKSFNRVEEMLN 240 (370)
Q Consensus 180 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~---~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~ 240 (370)
.|.-++...+.++|+....++++..+ +.+. ++..+..+|...|++.+++++-.+=+.+..
T Consensus 12 ~GlkLY~~~~~~~Al~~W~~aL~k~~-~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~ 74 (80)
T PF10579_consen 12 KGLKLYHQNETQQALQKWRKALEKIT-DREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAE 74 (80)
T ss_pred HHHHHhccchHHHHHHHHHHHHhhcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34446688999999999999999887 5554 445566788999999999888776665543
No 356
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=89.73 E-value=0.71 Score=42.26 Aligned_cols=68 Identities=18% Similarity=0.177 Sum_probs=62.6
Q ss_pred HHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 256 NLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
.....+.+.+-++.+.+..|+..-..+++.++....+++.++..+....++++|++.++.+....|++
T Consensus 275 ~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d 342 (372)
T KOG0546|consen 275 FSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPND 342 (372)
T ss_pred cccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcch
Confidence 45566788999999999999999888999899999999999999999999999999999999999986
No 357
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=89.53 E-value=0.98 Score=47.53 Aligned_cols=127 Identities=17% Similarity=0.125 Sum_probs=84.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHH----cC---CHHHHHHHHHHHHHHhhcCCccCCccc
Q 017532 180 LIGYHLSSKEYNVCFDLMNESIGRGN--GLDPILVSKLGFIQMQ----VG---DLEGAKKSFNRVEEMLNEGKFEDGLLS 250 (370)
Q Consensus 180 la~~~~~~g~~~~A~~~~~~~l~~~~--~~~~~~~~~lg~~~~~----~g---~~~~A~~~~~~a~~l~~~~~~~~~~~~ 250 (370)
.-..++..+.|+.|+..|+++....| .....+...+|...+. .| ++++|+..|++.- +...
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~ 550 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH----------GGVG 550 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc----------CCCC
Confidence 33567778999999999999999888 1234667777776654 23 4666777776654 1122
Q ss_pred hHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH-------HHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 251 EVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVA-------INNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 251 ~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~-------~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
-| .-+..+|.+|...|+|+|-+++|.-++...|++|.. .+.+=.++.+. -..|...+--++..-|.
T Consensus 551 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 623 (932)
T PRK13184 551 AP----LEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKH--RREALVFMLLALWIAPE 623 (932)
T ss_pred Cc----hHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhCcc
Confidence 23 236778999999999999999999999998887642 22232332222 23444555555555554
No 358
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=89.36 E-value=1.5 Score=42.43 Aligned_cols=89 Identities=16% Similarity=0.081 Sum_probs=69.4
Q ss_pred HcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHc---CCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 017532 221 QVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVG---KDYVSAVREYEECIERDYNDIVAINNKA 297 (370)
Q Consensus 221 ~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~---g~~~eA~~~~~~~l~~~p~~~~~~~nla 297 (370)
..+....|+..|.+++.-.+. . ...+.+++.++++. |+.-.|+.....+++++|....+++.++
T Consensus 386 y~~~~~~~i~~~s~a~q~~~~------------~-~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la 452 (758)
T KOG1310|consen 386 YESIVSGAISHYSRAIQYVPD------------A-IYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLA 452 (758)
T ss_pred hhHHHHHHHHHHHHHhhhccc------------h-hHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHH
Confidence 345566778888887753222 2 55666777777764 4555677778888999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 298 LCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 298 ~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
.++..++++.+|+++...+....|+
T Consensus 453 ~aL~el~r~~eal~~~~alq~~~Pt 477 (758)
T KOG1310|consen 453 RALNELTRYLEALSCHWALQMSFPT 477 (758)
T ss_pred HHHHHHhhHHHhhhhHHHHhhcCch
Confidence 9999999999999999888888885
No 359
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=89.27 E-value=0.85 Score=27.36 Aligned_cols=30 Identities=20% Similarity=0.354 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 017532 211 LVSKLGFIQMQVGDLEGAKKSFNRVEEMLN 240 (370)
Q Consensus 211 ~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~ 240 (370)
.+..||.+.+..++|++|+.-|++++.+..
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~~ 32 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEIQE 32 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 566778888888888888888888886644
No 360
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=88.45 E-value=3 Score=40.09 Aligned_cols=85 Identities=13% Similarity=-0.153 Sum_probs=42.8
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCC-HH
Q 017532 195 DLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKD-YV 273 (370)
Q Consensus 195 ~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~-~~ 273 (370)
.+|+.+....+ .|+.+|..-..-..+.+.+-+-...|.+++...|+ . ...|+.-|.-.+.-+. .+
T Consensus 92 ~lyr~at~rf~-~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~------------~-~dLWI~aA~wefe~n~ni~ 157 (568)
T KOG2396|consen 92 FLYRRATNRFN-GDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPN------------N-PDLWIYAAKWEFEINLNIE 157 (568)
T ss_pred HHHHHHHHhcC-CCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCC------------C-chhHHhhhhhHHhhccchH
Confidence 44555555555 55555544433333344455555556555543222 2 3345545554444444 55
Q ss_pred HHHHHHHHHHhhCCCCHHHH
Q 017532 274 SAVREYEECIERDYNDIVAI 293 (370)
Q Consensus 274 eA~~~~~~~l~~~p~~~~~~ 293 (370)
.|...|.+++..+|+.+..|
T Consensus 158 saRalflrgLR~npdsp~Lw 177 (568)
T KOG2396|consen 158 SARALFLRGLRFNPDSPKLW 177 (568)
T ss_pred HHHHHHHHHhhcCCCChHHH
Confidence 55555666666666655443
No 361
>PRK11619 lytic murein transglycosylase; Provisional
Probab=88.40 E-value=32 Score=35.17 Aligned_cols=121 Identities=7% Similarity=-0.105 Sum_probs=75.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHH
Q 017532 184 HLSSKEYNVCFDLMNESIGRGNGL---DPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSR 260 (370)
Q Consensus 184 ~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~ 260 (370)
-+...+.+.|...+.+........ ...+...+|.-....+..++|..+++.+... ..+.+. .+.
T Consensus 251 Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~----------~~~~~~-~e~-- 317 (644)
T PRK11619 251 SVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR----------SQSTSL-LER-- 317 (644)
T ss_pred HHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc----------cCCcHH-HHH--
Confidence 335577788888888765544311 1233445554444443246777777765421 112222 222
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 017532 261 NKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALE 318 (370)
Q Consensus 261 ~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~ 318 (370)
.-......++++.+..++..+-..........+-+|.++...|+.++|...|+++..
T Consensus 318 -r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 318 -RVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred -HHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 222444788888888888776444445677888899998889999999999988754
No 362
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=88.19 E-value=0.89 Score=25.15 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=19.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 017532 177 LNCLIGYHLSSKEYNVCFDLMNESIGR 203 (370)
Q Consensus 177 ~~~la~~~~~~g~~~~A~~~~~~~l~~ 203 (370)
+..+...|.+.|++++|..+++++.+.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 456667777778888888887777654
No 363
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=88.16 E-value=20 Score=34.04 Aligned_cols=59 Identities=10% Similarity=0.036 Sum_probs=43.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHH
Q 017532 179 CLIGYHLSSKEYNVCFDLMNESIGR-GNGLDPILVS--KLGFIQMQVGDLEGAKKSFNRVEE 237 (370)
Q Consensus 179 ~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~--~lg~~~~~~g~~~~A~~~~~~a~~ 237 (370)
..+.-+++.++|..|..+++.+... .+......+. ..|.-++...++.+|.+.++....
T Consensus 136 ~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 136 RRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4445667889999999999999985 3311223343 346667889999999999998874
No 364
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=88.02 E-value=24 Score=33.32 Aligned_cols=133 Identities=14% Similarity=0.030 Sum_probs=87.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHH
Q 017532 184 HLSSKEYNVCFDLMNESIGRGNGL--------DPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFR 255 (370)
Q Consensus 184 ~~~~g~~~~A~~~~~~~l~~~~~~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~ 255 (370)
+...+++.+|..+-+..+..-... ....|+.+..+|...|+...=...+...++...- ..+.+-+
T Consensus 136 l~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtL-------rhd~e~q 208 (493)
T KOG2581|consen 136 LIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATL-------RHDEEGQ 208 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhh-------cCcchhH
Confidence 335577777777766665432211 2355677788888899977777776666544321 1122222
Q ss_pred HHHHHhHHHHHHHcCCHHHHHHHHHHHHhh--CCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 256 NLVSRNKALIYLVGKDYVSAVREYEECIER--DYN--DIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~--~p~--~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
+...+.+=..|...+.|+.|-+...++.-- ..+ .....+.+|.+..-.++|..|.+++-+|+.+.|..
T Consensus 209 avLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 209 AVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 444445666778889999998877766411 122 23456678888899999999999999999999953
No 365
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=87.76 E-value=1.7 Score=27.08 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=17.7
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Q 017532 294 NNKALCLMYLRDLSDSIKVLENALE 318 (370)
Q Consensus 294 ~nla~~~~~~g~~~~A~~~l~~al~ 318 (370)
.++|.+|...|+.+.|.+.+++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4567777777777777777777774
No 366
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=87.68 E-value=2.7 Score=37.62 Aligned_cols=62 Identities=15% Similarity=0.043 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 017532 228 AKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMY 302 (370)
Q Consensus 228 A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~ 302 (370)
|+.+|.+|..+.|.. +..++.+|.++...|+.-+|+-+|-+++......+.+..|+...+.+
T Consensus 1 A~~~Y~~A~~l~P~~-------------G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSN-------------GNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTB-------------SHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCC-------------CCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 788999999887764 55678899999999999999999999998776678999999988887
No 367
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=87.42 E-value=1.3 Score=27.61 Aligned_cols=26 Identities=15% Similarity=0.083 Sum_probs=20.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 017532 178 NCLIGYHLSSKEYNVCFDLMNESIGR 203 (370)
Q Consensus 178 ~~la~~~~~~g~~~~A~~~~~~~l~~ 203 (370)
+.+|..|..+|+++.|..++++++..
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 46777888888888888888888753
No 368
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=87.25 E-value=0.98 Score=42.76 Aligned_cols=69 Identities=16% Similarity=0.149 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHh
Q 017532 211 LVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIE 284 (370)
Q Consensus 211 ~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~ 284 (370)
.+..|.+++..+|||..|++.++...- .+... -....+.. ...++..|.+|+.+++|.+|+..|..++-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl-~~~~l---~~~V~~~~-is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDL-NKKGL---YTKVPACH-ISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCc-ccchh---hccCcchh-eehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677899999999999999877531 11100 00112222 55677899999999999999999998864
No 369
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.63 E-value=3.5 Score=34.95 Aligned_cols=54 Identities=17% Similarity=0.228 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHHcCCHHHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNG---LDPILVSKLGFIQMQVGDLEGAK 229 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~---~~~~~~~~lg~~~~~~g~~~~A~ 229 (370)
+..+.+|..|. ..|.++|+.++.++++.... -++..+..|+.++.+.|+++.|-
T Consensus 142 elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 142 ELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 55567777666 68999999999999998762 36789999999999999999873
No 370
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=86.54 E-value=1.1 Score=24.67 Aligned_cols=28 Identities=14% Similarity=0.260 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 292 AINNKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 292 ~~~nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
+|+.+-.++.+.|++++|.+.+++..+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 4566677777777777777777776543
No 371
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=86.29 E-value=3.1 Score=24.58 Aligned_cols=32 Identities=6% Similarity=-0.109 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHH--HHHHHHhCCC
Q 017532 291 VAINNKALCLMYLRDLSDSIKV--LENALERVPT 322 (370)
Q Consensus 291 ~~~~nla~~~~~~g~~~~A~~~--l~~al~~~p~ 322 (370)
..++.+|..+...|++++|+.. |.-+..++|.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 4567789999999999999999 4477777664
No 372
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.22 E-value=31 Score=32.65 Aligned_cols=107 Identities=12% Similarity=0.014 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCC
Q 017532 171 KREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGL---DPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDG 247 (370)
Q Consensus 171 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~ 247 (370)
+...+++..++..|..-|+.+.|+..|.++ +-++.. -...+.++-.+...+|+|..-..+..+|.+-...+
T Consensus 147 EsiRra~~Dl~dhy~~cG~l~~Alr~YsR~-RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~----- 220 (466)
T KOG0686|consen 147 ESIRRALEDLGDHYLDCGQLDNALRCYSRA-RDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDAN----- 220 (466)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHhhhhhh-hhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhh-----
Confidence 333577889999999999999999999995 444411 23566778888999999998888888887531000
Q ss_pred ccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHH
Q 017532 248 LLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECI 283 (370)
Q Consensus 248 ~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l 283 (370)
....+.....+...-|.+.+..++|..|..+|-.+.
T Consensus 221 ~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 221 ENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred hhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 011122223345557888889999999999987664
No 373
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=86.21 E-value=5.3 Score=37.72 Aligned_cols=104 Identities=13% Similarity=0.062 Sum_probs=75.0
Q ss_pred cccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 017532 131 IKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPI 210 (370)
Q Consensus 131 ~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 210 (370)
++.+++-.|..+|..+++.|.......+... ............+...++.||+++++.+.|+..-++.|..+| ....
T Consensus 187 yrqk~ya~Aa~rF~taLelcskg~a~~k~~~--~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP-~~fr 263 (569)
T PF15015_consen 187 YRQKKYAVAAGRFRTALELCSKGAALSKPFK--ASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNP-SYFR 263 (569)
T ss_pred HhhHHHHHHHHHHHHHHHHHhhhhhccCCCC--CChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCc-chhh
Confidence 6778888999999999988887654332100 001111111234556788999999999999999999999999 7766
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017532 211 LVSKLGFIQMQVGDLEGAKKSFNRVEE 237 (370)
Q Consensus 211 ~~~~lg~~~~~~g~~~~A~~~~~~a~~ 237 (370)
-+...+.++..+.+|.+|-..+--+.-
T Consensus 264 nHLrqAavfR~LeRy~eAarSamia~y 290 (569)
T PF15015_consen 264 NHLRQAAVFRRLERYSEAARSAMIADY 290 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667778888888888888877766543
No 374
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=85.93 E-value=5.2 Score=38.85 Aligned_cols=90 Identities=11% Similarity=-0.098 Sum_probs=70.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHH
Q 017532 187 SKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQV---GDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKA 263 (370)
Q Consensus 187 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~---g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g 263 (370)
.+.+..|+..|.+++...| .....+.+.+.++++. |+.-.|+.-...+++ .+|.. ..+++.++
T Consensus 387 ~~~~~~~i~~~s~a~q~~~-~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alr------------ln~s~-~kah~~la 452 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYVP-DAIYLLENRAAALMKRKWRGDSYLALRDCHVALR------------LNPSI-QKAHFRLA 452 (758)
T ss_pred hHHHHHHHHHHHHHhhhcc-chhHHHHhHHHHHHhhhccccHHHHHHhHHhhcc------------CChHH-HHHHHHHH
Confidence 3667888999999999988 7777887778888764 566667777777773 45655 67788899
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 017532 264 LIYLVGKDYVSAVREYEECIERDYNDI 290 (370)
Q Consensus 264 ~~~~~~g~~~eA~~~~~~~l~~~p~~~ 290 (370)
.++...+++.+|+.+...+....|.+.
T Consensus 453 ~aL~el~r~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 453 RALNELTRYLEALSCHWALQMSFPTDV 479 (758)
T ss_pred HHHHHHhhHHHhhhhHHHHhhcCchhh
Confidence 999999999999998887777777543
No 375
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=85.82 E-value=4.4 Score=38.89 Aligned_cols=99 Identities=4% Similarity=-0.159 Sum_probs=70.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHH
Q 017532 178 NCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNL 257 (370)
Q Consensus 178 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~ 257 (370)
...+.+....|+|+.|...+..+-..-. ....+...+-+....+|+++.|...-+-++. +. -.+|+.
T Consensus 327 ~l~~~i~~~lg~ye~~~~~~s~~~~~~~-s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~---~e------ie~~ei--- 393 (831)
T PRK15180 327 QLRSVIFSHLGYYEQAYQDISDVEKIIG-TTDSTLRCRLRSLHGLARWREALSTAEMMLS---NE------IEDEEV--- 393 (831)
T ss_pred HHHHHHHHHhhhHHHHHHHhhchhhhhc-CCchHHHHHHHhhhchhhHHHHHHHHHHHhc---cc------cCChhh---
Confidence 3556677788999999998877755444 3345666667788889999999887776662 21 234544
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 017532 258 VSRNKALIYLVGKDYVSAVREYEECIERDYNDI 290 (370)
Q Consensus 258 ~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~ 290 (370)
...-+...-..|-+++|.-.+++++.++|..-
T Consensus 394 -~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 394 -LTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred -eeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 22345556677889999999999999987643
No 376
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=85.63 E-value=1.8 Score=24.43 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=19.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 017532 177 LNCLIGYHLSSKEYNVCFDLMNESIGRG 204 (370)
Q Consensus 177 ~~~la~~~~~~g~~~~A~~~~~~~l~~~ 204 (370)
++.+...|.+.|++++|..+|+++.+.+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g 30 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERG 30 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 4556667777788888888877776544
No 377
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=85.61 E-value=11 Score=43.06 Aligned_cols=144 Identities=8% Similarity=-0.106 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
.+++...|.+-...|.++.|...+-.+.+... +.+....|..+++.||-..|+..+++.++++..+-. +.-...|.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~---~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~-~~~~~~p~ 1745 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRL---PEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLH-TPYTDTPQ 1745 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhccc---chHHHHHHHHHHhhccHHHHHHHHHHHHHhhccccc-CCccccch
Confidence 67888899999999999999998888876654 678889999999999999999999999976543210 00011122
Q ss_pred HHHH-----HHHhHHHHHHHcCCH--HHHHHHHHHHHhhCCCCHHHHHHHHHH------------HHHhCCHHH---HHH
Q 017532 254 FRNL-----VSRNKALIYLVGKDY--VSAVREYEECIERDYNDIVAINNKALC------------LMYLRDLSD---SIK 311 (370)
Q Consensus 254 ~~~~-----~~~~~g~~~~~~g~~--~eA~~~~~~~l~~~p~~~~~~~nla~~------------~~~~g~~~~---A~~ 311 (370)
.+.. +....+.-.-..|++ .+-+++|+.+.+..|.....++.+|.- ..++|++.. ++-
T Consensus 1746 ~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~ 1825 (2382)
T KOG0890|consen 1746 SVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIY 1825 (2382)
T ss_pred hhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHHH
Confidence 2111 111222222233432 234678999999999766555555521 233445555 555
Q ss_pred HHHHHHHhCC
Q 017532 312 VLENALERVP 321 (370)
Q Consensus 312 ~l~~al~~~p 321 (370)
.|.+++..+.
T Consensus 1826 ~~~~sl~yg~ 1835 (2382)
T KOG0890|consen 1826 FFGRALYYGN 1835 (2382)
T ss_pred HHHHHHHhcc
Confidence 5566665543
No 378
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.58 E-value=14 Score=36.71 Aligned_cols=58 Identities=16% Similarity=0.108 Sum_probs=34.7
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHH------------HHHHHH-HHHHHhCCHHHHHHHHHHH
Q 017532 259 SRNKALIYLVGKDYVSAVREYEECIERD--------YNDIV------------AINNKA-LCLMYLRDLSDSIKVLENA 316 (370)
Q Consensus 259 ~~~~g~~~~~~g~~~eA~~~~~~~l~~~--------p~~~~------------~~~nla-~~~~~~g~~~~A~~~l~~a 316 (370)
|..+|...+..|++..|.++|.++-... ..+.. -.+|.| .++..+|+++++.+.+.+-
T Consensus 669 w~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 669 WRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHHHhc
Confidence 4455666666666666666666653331 11111 123555 5788899999998888664
No 379
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=85.16 E-value=50 Score=34.27 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=13.4
Q ss_pred hHHHHHHcCChHHHHHHHHH
Q 017532 34 SLQDLATRGSWRTIIDNVSR 53 (370)
Q Consensus 34 ~l~~l~~~g~~~~Ai~~~~~ 53 (370)
=+..|.-+|.|+.||..+.+
T Consensus 474 Yf~~LlLsgqfe~AI~fL~~ 493 (835)
T KOG2168|consen 474 YFQVLLLSGQFERAIEFLHR 493 (835)
T ss_pred HHHHHHHHHhHHHHHHHHHh
Confidence 35566677777777766655
No 380
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.71 E-value=5.1 Score=34.47 Aligned_cols=59 Identities=14% Similarity=0.026 Sum_probs=42.2
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcc
Q 017532 266 YLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVA 324 (370)
Q Consensus 266 ~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~ 324 (370)
++..+...+|+...+.-++-+|.+......+-..++-.|++++|...++-+-++.|++.
T Consensus 11 LL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 11 LLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 44667777777777777777777777666666777777777777777777777776653
No 381
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=83.88 E-value=38 Score=32.48 Aligned_cols=25 Identities=4% Similarity=0.065 Sum_probs=19.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC
Q 017532 181 IGYHLSSKEYNVCFDLMNESIGRGN 205 (370)
Q Consensus 181 a~~~~~~g~~~~A~~~~~~~l~~~~ 205 (370)
....++.++|..|....++++++.|
T Consensus 307 M~~~~K~KNf~tAa~FArRLLel~p 331 (422)
T PF06957_consen 307 MSQAFKLKNFITAASFARRLLELNP 331 (422)
T ss_dssp HHHCCCTTBHHHHHHHHHHHHCT--
T ss_pred HHHHHHhccHHHHHHHHHHHHHcCC
Confidence 3556678999999999999998887
No 382
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=83.61 E-value=11 Score=33.28 Aligned_cols=67 Identities=12% Similarity=-0.053 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHH
Q 017532 210 ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECI 283 (370)
Q Consensus 210 ~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l 283 (370)
.+...+|.-|+..|++++|.++|+.+....+... =......+...+-.|+...|+.++.+...-+++
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~eg-------W~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREG-------WWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC-------cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3446789999999999999999999976554421 122236667778899999999998877655543
No 383
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=83.50 E-value=97 Score=36.17 Aligned_cols=113 Identities=16% Similarity=0.109 Sum_probs=80.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017532 207 LDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD 286 (370)
Q Consensus 207 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~ 286 (370)
.-...|...|++....|.++.|..+.-+|.+. .+ ..+.+.+|..+..+|+...|+..+++.++.+
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~------------r~---~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKES------------RL---PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc------------cc---chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 34578899999999999999999999888742 11 4567889999999999999999999999775
Q ss_pred -CC----------CH------HHHHHHHHHHHHhCC--HHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Q 017532 287 -YN----------DI------VAINNKALCLMYLRD--LSDSIKVLENALERVPTVALNETLVVNLCSMY 337 (370)
Q Consensus 287 -p~----------~~------~~~~nla~~~~~~g~--~~~A~~~l~~al~~~p~~~~~~~~~~nl~~ly 337 (370)
|+ .. .+....+.-...+|+ .++-+++|..+.+..|.- +.-+|.++.-|
T Consensus 1733 ~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ew---e~~hy~l~~yy 1799 (2382)
T KOG0890|consen 1733 FPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEW---EDKHYHLGKYY 1799 (2382)
T ss_pred cccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccc---cCceeeHHHHH
Confidence 22 11 122223333334454 345678888999999864 55566666433
No 384
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=83.28 E-value=2.7 Score=23.63 Aligned_cols=29 Identities=17% Similarity=0.206 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 017532 292 AINNKALCLMYLRDLSDSIKVLENALERV 320 (370)
Q Consensus 292 ~~~nla~~~~~~g~~~~A~~~l~~al~~~ 320 (370)
+|+.+-.++.+.|++++|.+.|.++.+..
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g 30 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERG 30 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 46677778888888888888888877653
No 385
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=83.26 E-value=20 Score=28.17 Aligned_cols=107 Identities=14% Similarity=0.079 Sum_probs=67.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHh
Q 017532 182 GYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRN 261 (370)
Q Consensus 182 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~ 261 (370)
..+...+.....+.+++.++..++ .++.....+..+|.+.+ ..+.+.+++.- .. ..+++.
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~~----~~-------~yd~~~------- 74 (140)
T smart00299 15 ELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDNK----SN-------HYDIEK------- 74 (140)
T ss_pred HHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHhc----cc-------cCCHHH-------
Confidence 345556889999999999999987 88888899999998764 45666666631 01 233333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 017532 262 KALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLEN 315 (370)
Q Consensus 262 ~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~ 315 (370)
.+.++...+-+++++-.|.+. ..+..+.. .+....++++.|++++.+
T Consensus 75 ~~~~c~~~~l~~~~~~l~~k~----~~~~~Al~---~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 75 VGKLCEKAKLYEEAVELYKKD----GNFKDAIV---TLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred HHHHHHHcCcHHHHHHHHHhh----cCHHHHHH---HHHHcccCHHHHHHHHHh
Confidence 344555666777777666654 11111111 112233788888888876
No 386
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=82.77 E-value=7.3 Score=27.37 Aligned_cols=34 Identities=15% Similarity=0.039 Sum_probs=20.1
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHhh-------CCCCHHH
Q 017532 259 SRNKALIYLVGKDYVSAVREYEECIER-------DYNDIVA 292 (370)
Q Consensus 259 ~~~~g~~~~~~g~~~eA~~~~~~~l~~-------~p~~~~~ 292 (370)
+...|.-+-..|++.+|+.+|+++++. .|+++.-
T Consensus 9 ~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k 49 (75)
T cd02682 9 YAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTR 49 (75)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHH
Confidence 334555555667777666666665543 5776653
No 387
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=82.51 E-value=47 Score=32.53 Aligned_cols=140 Identities=14% Similarity=0.057 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH---------------------
Q 017532 176 VLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNR--------------------- 234 (370)
Q Consensus 176 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~--------------------- 234 (370)
.++.++.+|... ..++=..+-+++++.+- ++...-..|+..|.+ ++.+++..+|.+
T Consensus 101 al~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL 177 (711)
T COG1747 101 ALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKL 177 (711)
T ss_pred HHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHH
Q ss_pred ----------HHHHhhcCCccCCccchHHHHHHHHHhHH-HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-
Q 017532 235 ----------VEEMLNEGKFEDGLLSEVEFRNLVSRNKA-LIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMY- 302 (370)
Q Consensus 235 ----------a~~l~~~~~~~~~~~~~p~~~~~~~~~~g-~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~- 302 (370)
.+++..+ -+......+..+.+.-- .-|-...++.||++.+...++.+..|..+.-++..-+..
T Consensus 178 ~~~i~dD~D~fl~l~~k-----iqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~ 252 (711)
T COG1747 178 PELIGDDKDFFLRLQKK-----IQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDK 252 (711)
T ss_pred HHhccccHHHHHHHHHH-----HHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHH
Q ss_pred -------------------hCCHHHHHHHHHHHHHhCCCc
Q 017532 303 -------------------LRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 303 -------------------~g~~~~A~~~l~~al~~~p~~ 323 (370)
-.++.+++..|++.+..+..+
T Consensus 253 y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGn 292 (711)
T COG1747 253 YRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGN 292 (711)
T ss_pred hccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCc
No 388
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=82.11 E-value=4.9 Score=40.79 Aligned_cols=114 Identities=21% Similarity=0.182 Sum_probs=81.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHH--HHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 017532 216 GFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIY--LVGKDYVSAVREYEECIERDYNDIVAI 293 (370)
Q Consensus 216 g~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~--~~~g~~~eA~~~~~~~l~~~p~~~~~~ 293 (370)
|+..++.+++++|.--|..++.+.|.. +++. +....+.+-++ ...|+|.+++...+-++...|....++
T Consensus 60 ~n~~~~K~d~~~~~~~~~~~~~llp~~--------~~~~-a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~L 130 (748)
T KOG4151|consen 60 GNKLFQKRDYEGAMFRYDCAIKLLPKD--------HHVV-ATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKAL 130 (748)
T ss_pred hhHHhhhhhhhccchhhhhhheecccc--------chhh-hhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHH
Confidence 677788888888877787877665542 3333 44444455444 456789999998999999999988999
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Q 017532 294 NNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYE 338 (370)
Q Consensus 294 ~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lye 338 (370)
+.++.+|.-.++++-|++.+.-.....|+.-...+....+-.+++
T Consensus 131 l~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll~ 175 (748)
T KOG4151|consen 131 LKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLLE 175 (748)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHh
Confidence 999999999999999999876667777875333343344444444
No 389
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=82.05 E-value=3.8 Score=22.61 Aligned_cols=28 Identities=21% Similarity=0.152 Sum_probs=17.0
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 017532 270 KDYVSAVREYEECIERDYNDIVAINNKA 297 (370)
Q Consensus 270 g~~~eA~~~~~~~l~~~p~~~~~~~nla 297 (370)
|+++.|...|++++...|.++..|...+
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 3456666666666666666666655544
No 390
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=81.58 E-value=3.6 Score=23.18 Aligned_cols=27 Identities=15% Similarity=0.241 Sum_probs=17.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 017532 177 LNCLIGYHLSSKEYNVCFDLMNESIGR 203 (370)
Q Consensus 177 ~~~la~~~~~~g~~~~A~~~~~~~l~~ 203 (370)
+..+...+.+.|+++.|..+++.+.+.
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~~ 30 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKEQ 30 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 445556666667777777777666543
No 391
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=81.05 E-value=14 Score=29.64 Aligned_cols=49 Identities=22% Similarity=0.057 Sum_probs=38.6
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCH
Q 017532 258 VSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDL 306 (370)
Q Consensus 258 ~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~ 306 (370)
..+..+.-.+..|++.-|.+....++..+|+|..+...++.++..+|.-
T Consensus 72 ~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 72 KVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 3455777888999999999999999999999999999998888766543
No 392
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.17 E-value=11 Score=37.39 Aligned_cols=50 Identities=24% Similarity=0.348 Sum_probs=40.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017532 182 GYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEE 237 (370)
Q Consensus 182 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~ 237 (370)
++.++.|+++.|..+..++ ++..-|..||...+..|++..|.++|.++..
T Consensus 645 elal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred hhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 3455668888887776665 6677789999999999999999999999864
No 393
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=80.03 E-value=44 Score=29.82 Aligned_cols=114 Identities=10% Similarity=-0.111 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHhcCCHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 175 FVLNCLIGYHLSSKEYN-VCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~-~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
.+++.+-.+.-..|++. .-+++.+.++..+. .+.-+|...-.+....++++.-.++..+.++..-.+
T Consensus 113 QvWHHRr~ive~l~d~s~rELef~~~~l~~Da-KNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~N----------- 180 (318)
T KOG0530|consen 113 QVWHHRRVIVELLGDPSFRELEFTKLMLDDDA-KNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRN----------- 180 (318)
T ss_pred hHHHHHHHHHHHhcCcccchHHHHHHHHhccc-cchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhc-----------
Confidence 45555555666678888 78899999999888 788888888888888999999999999988632221
Q ss_pred HHHHHHHhHHHHHHH-cC-----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 017532 254 FRNLVSRNKALIYLV-GK-----DYVSAVREYEECIERDYNDIVAINNKALCLMY 302 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~-~g-----~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~ 302 (370)
..+|..+=.+... .| ..+.-+.+..+.|...|+|..+|+-+.-.+..
T Consensus 181 --NSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 181 --NSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred --cchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 2233333333322 22 23344566777888899999999988766654
No 394
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=79.68 E-value=68 Score=31.87 Aligned_cols=136 Identities=15% Similarity=-0.002 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
..+...+.-....|+.+-|-..+.++.+......+.+...-+..-...|+++.|...+++..+- . |.+
T Consensus 332 efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e-----------~-pg~ 399 (577)
T KOG1258|consen 332 EFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESE-----------Y-PGL 399 (577)
T ss_pred HHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh-----------C-Cch
Confidence 3344444555556999999998888888776466666666678888899999999999999842 2 544
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHH---HHHHHHhhCCC---CHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVR---EYEECIERDYN---DIVAINNKALC-LMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~---~~~~~l~~~p~---~~~~~~nla~~-~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
..+-.-.......+|..+.+.. .+.....-.-+ ....+.+.+.. +.-.++.+.|...+.++++..|..
T Consensus 400 -v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~ 474 (577)
T KOG1258|consen 400 -VEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDC 474 (577)
T ss_pred -hhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCcc
Confidence 4444456666777888888873 33333222111 12344455543 334788999999999999999876
No 395
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=79.58 E-value=38 Score=30.23 Aligned_cols=130 Identities=15% Similarity=-0.084 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHhhcCCccCCcc
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRG----NGLDPILVSKLGFIQMQVGDLE-GAKKSFNRVEEMLNEGKFEDGLL 249 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----~~~~~~~~~~lg~~~~~~g~~~-~A~~~~~~a~~l~~~~~~~~~~~ 249 (370)
.+++.=+..+++.|++..|..+..-+++.. ...+......++.+....+.-+ +-.+..+++++-. .... ...
T Consensus 11 dLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~~~~--~~~ 87 (260)
T PF04190_consen 11 DLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWS-KFGS--YKF 87 (260)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-HTSS---TT
T ss_pred HHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-ccCC--CCC
Confidence 455667778888888888877665554431 1144555577777777776554 4455555566543 3211 122
Q ss_pred chHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH--HHHHHHHHHhCCHHHHHHHHHHH
Q 017532 250 SEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAI--NNKALCLMYLRDLSDSIKVLENA 316 (370)
Q Consensus 250 ~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~--~nla~~~~~~g~~~~A~~~l~~a 316 (370)
.+| ..+..+|..+.+.|++.+|..+|-.. +++... ..+-..+...|...+.--++.++
T Consensus 88 Gdp----~LH~~~a~~~~~e~~~~~A~~Hfl~~-----~~~~~~~~~~ll~~~~~~~~~~e~dlfi~Ra 147 (260)
T PF04190_consen 88 GDP----ELHHLLAEKLWKEGNYYEAERHFLLG-----TDPSAFAYVMLLEEWSTKGYPSEADLFIARA 147 (260)
T ss_dssp --H----HHHHHHHHHHHHTT-HHHHHHHHHTS------HHHHHHHHHHHHHHHHHTSS--HHHHHHHH
T ss_pred CCH----HHHHHHHHHHHhhccHHHHHHHHHhc-----CChhHHHHHHHHHHHHHhcCCcchhHHHHHH
Confidence 334 44677899999999999988887543 333222 22333444455555554444444
No 396
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=78.91 E-value=6.9 Score=21.92 Aligned_cols=28 Identities=11% Similarity=0.116 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 292 AINNKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 292 ~~~nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
+|+.+..++.+.|+++.|...++.+.+.
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~ 30 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQ 30 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4566667777777777777777776553
No 397
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=78.84 E-value=14 Score=35.26 Aligned_cols=27 Identities=4% Similarity=0.176 Sum_probs=22.7
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHhh
Q 017532 259 SRNKALIYLVGKDYVSAVREYEECIER 285 (370)
Q Consensus 259 ~~~~g~~~~~~g~~~eA~~~~~~~l~~ 285 (370)
.+..|.-++..|+|.+|+..|+.+|..
T Consensus 207 ~Lk~gyk~~t~gKF~eA~~~Fr~iL~~ 233 (422)
T PF06957_consen 207 RLKEGYKLFTAGKFEEAIEIFRSILHS 233 (422)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 455799999999999999999998866
No 398
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=78.81 E-value=75 Score=32.35 Aligned_cols=25 Identities=16% Similarity=0.157 Sum_probs=16.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 017532 212 VSKLGFIQMQVGDLEGAKKSFNRVE 236 (370)
Q Consensus 212 ~~~lg~~~~~~g~~~~A~~~~~~a~ 236 (370)
....|.-....|++++|+..|+-+.
T Consensus 417 ~~~~A~~~e~~g~~~dAi~Ly~La~ 441 (613)
T PF04097_consen 417 IEQAAREAEERGRFEDAILLYHLAE 441 (613)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 3555666777888888888877664
No 399
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=78.64 E-value=35 Score=33.79 Aligned_cols=112 Identities=7% Similarity=-0.165 Sum_probs=79.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHhhcCCccCCccchHHHHHHHH
Q 017532 181 IGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNR-VEEMLNEGKFEDGLLSEVEFRNLVS 259 (370)
Q Consensus 181 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~-a~~l~~~~~~~~~~~~~p~~~~~~~ 259 (370)
...+...++...+.-.....+..+| .......+||......|....+...+.. +....+++.. ...+ ....
T Consensus 74 si~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~---~~~~ 145 (620)
T COG3914 74 SILLAPLADSTLAFLAKRIPLSVNP-ENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAE----FLGH---LIRF 145 (620)
T ss_pred HhhccccccchhHHHHHhhhHhcCc-ccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHH----HHhh---HHHH
Confidence 3344566888888888999999999 9999999999988888887777666655 5543333200 1111 1112
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 017532 260 RNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCL 300 (370)
Q Consensus 260 ~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~ 300 (370)
..+|......|+..++....+++.+..|.++.+.-.+.-..
T Consensus 146 ~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r 186 (620)
T COG3914 146 YQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTAR 186 (620)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHH
Confidence 23588888999999999999999999999876655444443
No 400
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=78.48 E-value=52 Score=29.85 Aligned_cols=89 Identities=15% Similarity=0.068 Sum_probs=45.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHH-HHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 017532 216 GFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIY-LVGKDYVSAVREYEECIERDYNDIVAIN 294 (370)
Q Consensus 216 g~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~-~~~g~~~eA~~~~~~~l~~~p~~~~~~~ 294 (370)
....+..|||.+|+..+.+..++...-.+ -.+-.+. ...+...+ ....+.+.+ |.++.. -=++..|.
T Consensus 134 l~~ll~~~dy~~Al~li~~~~~~l~~l~~---~~c~~~L----~~~L~e~~~~i~~~ld~~---l~~~~~--~Fd~~~Y~ 201 (291)
T PF10475_consen 134 LQELLEEGDYPGALDLIEECQQLLEELKG---YSCVRHL----SSQLQETLELIEEQLDSD---LSKVCQ--DFDPDKYS 201 (291)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHhccc---chHHHHH----hHHHHHHHHHHHHHHHHH---HHHHHH--hCCHHHHH
Confidence 44556789999999999888766533100 0000111 00011110 011111111 112111 24567888
Q ss_pred HHHHHHHHhCCHHHHHHHHHHH
Q 017532 295 NKALCLMYLRDLSDSIKVLENA 316 (370)
Q Consensus 295 nla~~~~~~g~~~~A~~~l~~a 316 (370)
.+-.+|..+|+.+.+.+-+...
T Consensus 202 ~v~~AY~lLgk~~~~~dkl~~~ 223 (291)
T PF10475_consen 202 KVQEAYQLLGKTQSAMDKLQMH 223 (291)
T ss_pred HHHHHHHHHhhhHHHHHHHHHH
Confidence 8888899999888877554443
No 401
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=78.39 E-value=22 Score=33.41 Aligned_cols=46 Identities=11% Similarity=0.035 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 017532 189 EYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRV 235 (370)
Q Consensus 189 ~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 235 (370)
..-+|+.+++.++...| .+......+.++|...|-.+.|...|...
T Consensus 198 ~l~~Ai~lLE~~l~~s~-~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 198 YLLQAIALLEHALKKSP-HNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 35579999999999999 99999999999999999999999999774
No 402
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=78.27 E-value=43 Score=30.30 Aligned_cols=56 Identities=20% Similarity=0.052 Sum_probs=43.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 017532 262 KALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENAL 317 (370)
Q Consensus 262 ~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al 317 (370)
.+..|...|.+.+|+...++++.++|-+...+.-+-..+...|+--.|++.|++.-
T Consensus 285 va~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 45666778888888888888888888888887777778888888777777777653
No 403
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=78.15 E-value=7.6 Score=35.25 Aligned_cols=67 Identities=13% Similarity=0.120 Sum_probs=56.3
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHHhCCHHHHHHHHHHHHHhCCCcc
Q 017532 258 VSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINN-KALCLMYLRDLSDSIKVLENALERVPTVA 324 (370)
Q Consensus 258 ~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~n-la~~~~~~g~~~~A~~~l~~al~~~p~~~ 324 (370)
.|...+....+.|-|.+--..|.+++..+|.|...|.. .+--+...++++.+...|.++++.+|+..
T Consensus 109 ~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p 176 (435)
T COG5191 109 IWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSP 176 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCc
Confidence 35556666677888999999999999999999998876 44556778999999999999999999873
No 404
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=78.00 E-value=20 Score=29.14 Aligned_cols=106 Identities=16% Similarity=0.018 Sum_probs=67.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCc----------------------c----CCccchHHHHHHHHHhHHHHH
Q 017532 213 SKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKF----------------------E----DGLLSEVEFRNLVSRNKALIY 266 (370)
Q Consensus 213 ~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~----------------------~----~~~~~~p~~~~~~~~~~g~~~ 266 (370)
...++..+..|+.++|.+.++++......... + -.+...+..........+.-.
T Consensus 6 i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a~~~ 85 (155)
T PF10938_consen 6 IQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTANEL 85 (155)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHHHHH
Confidence 34577788889999999998887655432100 0 000001111245667789999
Q ss_pred HHcCCHHHHHHHHHHHHh-hC------CC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 017532 267 LVGKDYVSAVREYEECIE-RD------YN-DIVAINNKALCLMYLRDLSDSIKVLENALE 318 (370)
Q Consensus 267 ~~~g~~~eA~~~~~~~l~-~~------p~-~~~~~~nla~~~~~~g~~~~A~~~l~~al~ 318 (370)
+..|+...|.+.++-+-. ++ |- ......+.|..+...|++.+|...+..++.
T Consensus 86 l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 86 LKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 999999999998877621 11 21 123455789999999999999999998874
No 405
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=77.87 E-value=9.8 Score=32.11 Aligned_cols=49 Identities=22% Similarity=0.173 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 273 VSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 273 ~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
+..++..++.+...| ++.++.+++.++...|+.++|...++++....|.
T Consensus 128 ~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 128 EAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 344566677777777 6889999999999999999999999999999994
No 406
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.72 E-value=42 Score=32.89 Aligned_cols=104 Identities=12% Similarity=0.053 Sum_probs=70.6
Q ss_pred HHHHhcCCHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHH
Q 017532 182 GYHLSSKEYN--VCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVS 259 (370)
Q Consensus 182 ~~~~~~g~~~--~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~ 259 (370)
..+...+.++ ...+.+.......| ..+.....-++++.-.|+.+.|+.+++..+.. .-..+....+
T Consensus 239 ~~~~~~p~~d~~~~~~~Ll~~~~~~p-~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~-----------~~kQ~~~l~~ 306 (546)
T KOG3783|consen 239 SFVLGTPNPDGEECEKALKKYRKRYP-KGALWLLMEARILSIKGNSEAAIDMESLSIPI-----------RMKQVKSLMV 306 (546)
T ss_pred HHHcCCCCccHHHHHHHhHHHHHhCC-CCccHHHHHHHHHHHcccHHHHHHHHHhcccH-----------HHHHHHHHHH
Confidence 3344444333 34445555556677 66666666688888888889999999888741 1223346667
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 017532 260 RNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKA 297 (370)
Q Consensus 260 ~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla 297 (370)
+.+|.++..+-+|..|...+......+-...-.|.-++
T Consensus 307 fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~Y~Yfa 344 (546)
T KOG3783|consen 307 FERAWLSVGQHQYSRAADSFDLLRDESDWSHAFYTYFA 344 (546)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHHHHHHH
Confidence 78999999999999999999998877655444444443
No 407
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=76.01 E-value=85 Score=31.02 Aligned_cols=117 Identities=16% Similarity=0.106 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHH-HHHHH
Q 017532 190 YNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKA-LIYLV 268 (370)
Q Consensus 190 ~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g-~~~~~ 268 (370)
++.-..++++++.....+-.-++...-+.-.+..-+..|...|.++-+.... + -.+++.-| +-|..
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~----------~---hhVfVa~A~mEy~c 413 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRT----------R---HHVFVAAALMEYYC 413 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCC----------c---chhhHHHHHHHHHh
Confidence 5566677888877665222234444455555566678889999988742211 1 12222222 34667
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 269 GKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 269 ~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
.++..-|...|+-.+...++.+..-+-...-+...|+-..|...|++++..
T Consensus 414 skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 414 SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 899999999999999999999998888889999999999999999999987
No 408
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=75.89 E-value=15 Score=27.77 Aligned_cols=50 Identities=16% Similarity=0.075 Sum_probs=36.7
Q ss_pred HHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q 017532 256 NLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRD 305 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~ 305 (370)
.......|.+.+..|++..|.+...++-+..+.....+..-|.+....||
T Consensus 59 a~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 59 AQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 44556689999999999999999999977755555555555566555554
No 409
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=75.15 E-value=57 Score=28.60 Aligned_cols=47 Identities=21% Similarity=0.246 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhh-----CCCCH---HHHHHHHHHHHH-hCCHHHHHHHHHHHHHh
Q 017532 273 VSAVREYEECIER-----DYNDI---VAINNKALCLMY-LRDLSDSIKVLENALER 319 (370)
Q Consensus 273 ~eA~~~~~~~l~~-----~p~~~---~~~~nla~~~~~-~g~~~~A~~~l~~al~~ 319 (370)
++|...|++++++ .|.+| ....|.++-++. .|+.++|++...+++..
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 6788888888765 56776 355677766654 89999999998888653
No 410
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=74.98 E-value=6.3 Score=27.68 Aligned_cols=36 Identities=14% Similarity=0.201 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 017532 190 YNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNE 241 (370)
Q Consensus 190 ~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~ 241 (370)
.++|+.++.+++..+. .|++++|+..|.++++.+-.
T Consensus 3 l~kai~Lv~~A~~eD~----------------~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 3 LERAHFLVTQAFDEDE----------------KGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHHHHHhhH----------------hhhHHHHHHHHHHHHHHHHH
Confidence 4556666666655444 68888888888888876543
No 411
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=74.89 E-value=13 Score=32.07 Aligned_cols=60 Identities=17% Similarity=0.079 Sum_probs=51.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 017532 181 IGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNE 241 (370)
Q Consensus 181 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~ 241 (370)
+.-+++.+..++|+...++-++..| .+......+-.+++-.|++++|...++-+-++.++
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakP-tda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~ 67 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKP-TDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQ 67 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCC-ccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcc
Confidence 3456777999999999999999999 88888888888999999999999999988865443
No 412
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=74.88 E-value=3.8 Score=37.12 Aligned_cols=85 Identities=9% Similarity=-0.110 Sum_probs=55.0
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHh-HHHHHHHcCCHHH
Q 017532 196 LMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRN-KALIYLVGKDYVS 274 (370)
Q Consensus 196 ~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~-~g~~~~~~g~~~e 274 (370)
.|.++....+ +|+..|..-+.--...|-+.+--..|.+++.. +|.. ++.|+. -+.-++..++++.
T Consensus 95 ~~~R~tnkff-~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~k------------hP~n-vdlWI~~c~~e~~~~ani~s 160 (435)
T COG5191 95 ELYRSTNKFF-NDPKIWSQYAAYVIKKKMYGEMKNIFAECLTK------------HPLN-VDLWIYCCAFELFEIANIES 160 (435)
T ss_pred eeehhhhcCC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------------CCCC-ceeeeeeccchhhhhccHHH
Confidence 3444455556 77777766555555566666666677777742 3333 555554 4456677788888
Q ss_pred HHHHHHHHHhhCCCCHHHHH
Q 017532 275 AVREYEECIERDYNDIVAIN 294 (370)
Q Consensus 275 A~~~~~~~l~~~p~~~~~~~ 294 (370)
+...|.+++..+|.++..|.
T Consensus 161 ~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 161 SRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred HHHHHHhhhccCCCCchHHH
Confidence 88888888888887776554
No 413
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=74.62 E-value=67 Score=29.12 Aligned_cols=102 Identities=14% Similarity=0.117 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCcc
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGN--GLDPILV---SKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLL 249 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~--~~~~~~~---~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~ 249 (370)
++..++|+.|++.+|.+.+.+.+.+.++..- .-..+.+ ..+|.+|-.+.=.++-++..+-++ .. .
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~i---Ek-------G 185 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDII---EK-------G 185 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHH---Hh-------C
Confidence 4556899999999999999999888876443 1223333 344555544333344333333333 23 2
Q ss_pred chHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017532 250 SEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD 286 (370)
Q Consensus 250 ~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~ 286 (370)
.+.+-+.......|.-.+...+|.+|-..+-..+...
T Consensus 186 gDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF 222 (412)
T COG5187 186 GDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTF 222 (412)
T ss_pred CCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 2333223333447888889999999999998887654
No 414
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=74.61 E-value=0.98 Score=44.86 Aligned_cols=167 Identities=16% Similarity=0.069 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH--hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 177 LNCLIGYHLSSKEYNVCFDLMNESI--GRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 177 ~~~la~~~~~~g~~~~A~~~~~~~l--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
+..-+..++..|++..|..++.++- .+.+..........+.+.+..|+++.|++.+.... . . ...+..
T Consensus 27 ~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~-~--~-------~l~~~~ 96 (536)
T PF04348_consen 27 LLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQD-L--W-------QLPPEQ 96 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCC-c--c-------cCCHHH
Confidence 3455677888899999999999886 23342344555677899999999999999997522 1 1 122333
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHH
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLC 334 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~ 334 (370)
....+..++.++...|++-+|...+-.+-..-++....-.|.-.++..+..+... .+..... .+++ .-.-++.|+
T Consensus 97 ~~~~~~l~A~a~~~~~~~l~Aa~~~i~l~~lL~d~~~~~~N~~~iW~~L~~l~~~--~L~~~~~-~~~~--~l~GWl~La 171 (536)
T PF04348_consen 97 QARYHQLRAQAYEQQGDPLAAARERIALDPLLPDPQERQENQDQIWQALSQLPPE--QLQQLRR-ASEP--DLQGWLELA 171 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHcCCHH--HHHhhhc-CCCH--HHHHHHHHH
Confidence 3455666888999999999988876655443332111112222223233232221 1222111 1111 135677888
Q ss_pred HHHHhccCCchhhHHHHHHHHhhh
Q 017532 335 SMYELAYVNHSDIKRTLSSWIGRV 358 (370)
Q Consensus 335 ~lyel~~~~~~~~~~~ll~~~~~~ 358 (370)
.++.-........+..+-.|-.++
T Consensus 172 ~i~~~~~~~p~~l~~al~~Wq~~y 195 (536)
T PF04348_consen 172 LIYRQYQQDPAQLKQALNQWQQRY 195 (536)
T ss_dssp ------------------------
T ss_pred HHHHhccCCHHHHHHHHHHHHHhC
Confidence 887644444445555555554443
No 415
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=74.43 E-value=40 Score=35.93 Aligned_cols=97 Identities=19% Similarity=0.111 Sum_probs=69.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHc-------CCHHHHHHHHHHHHhhCCC
Q 017532 216 GFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVG-------KDYVSAVREYEECIERDYN 288 (370)
Q Consensus 216 g~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~-------g~~~eA~~~~~~~l~~~p~ 288 (370)
...++.-..|+.|+..|.+...-.|.... . -++.+..|.....+ ..+++|+..|++.-. .|.
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 550 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKE----G------YEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVG 550 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCccc----c------hHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCC
Confidence 45667778899999999998866554311 1 23334455555442 257788888877532 355
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 289 DIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 289 ~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
-|.=|.-.|.+|..+|+++|=++.|.-|++..|..
T Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (932)
T PRK13184 551 APLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQH 585 (932)
T ss_pred CchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCC
Confidence 56677788899999999999999999999998875
No 416
>PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function.
Probab=74.43 E-value=47 Score=27.30 Aligned_cols=127 Identities=12% Similarity=0.137 Sum_probs=75.9
Q ss_pred cCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHH
Q 017532 133 LSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGN-GLDPIL 211 (370)
Q Consensus 133 ~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~ 211 (370)
.++.+.++..++.++......+.+- ++..+..+-...|.|.+|..++.+.++... .+-..+
T Consensus 70 ~~N~eLa~~tLEnLvt~snTKikEi------------------A~leqva~kis~~~~~eaK~LlnkIi~nk~YSeists 131 (220)
T PF10858_consen 70 KNNSELAFNTLENLVTNSNTKIKEI------------------AALEQVAIKISEKKYSEAKQLLNKIIENKEYSEISTS 131 (220)
T ss_pred cCcHHHHHHHHHHHHHccchHHHHH------------------HHHHHHHHHHhhcchhHHHHHHHHHHhhhhHHHHHHH
Confidence 3666777788877765554443221 112233344566999999999999998765 133455
Q ss_pred HHHHHHHHHHcCC----HHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017532 212 VSKLGFIQMQVGD----LEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD 286 (370)
Q Consensus 212 ~~~lg~~~~~~g~----~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~ 286 (370)
+..++.+.+-..| ++.-.+..+.... . .++..|-+ +.+.+..+..-.+.|.-.+|++.++.++..+
T Consensus 132 YaRi~wc~~vidD~nl~i~dk~kL~kyL~y-f-------dd~~kPFW-atAtI~kaiwdik~nm~~~aeknL~~l~~Sn 201 (220)
T PF10858_consen 132 YARINWCCMVIDDQNLNIQDKEKLIKYLNY-F-------DDEKKPFW-ATATIIKAIWDIKNNMKNQAEKNLKNLLASN 201 (220)
T ss_pred HHHHHHHHheecccccChhhHHHHHHHHhh-c-------cCCCCchH-HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Confidence 6667776665443 3322222222221 1 11345555 5666667777778888888888888777654
No 417
>PRK11619 lytic murein transglycosylase; Provisional
Probab=73.40 E-value=1.1e+02 Score=31.25 Aligned_cols=129 Identities=6% Similarity=-0.069 Sum_probs=86.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCc------------cCCccc
Q 017532 183 YHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKF------------EDGLLS 250 (370)
Q Consensus 183 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~------------~~~~~~ 250 (370)
.-+..++++.+...+..+-.... ......|.+|+.+...|+.++|..+|+++.. +.+.- ......
T Consensus 321 ~Al~~~dw~~~~~~i~~L~~~~~-~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~~~fYG~LAa~~Lg~~~~~~~~~ 397 (644)
T PRK11619 321 MALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--QRGFYPMVAAQRLGEEYPLKIDK 397 (644)
T ss_pred HHHHccCHHHHHHHHHhcCHhhc-cCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--CCCcHHHHHHHHcCCCCCCCCCC
Confidence 34467888887777777643333 5667789999999999999999999999642 11100 000000
Q ss_pred h--H--HHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 017532 251 E--V--EFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENA 316 (370)
Q Consensus 251 ~--p--~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~a 316 (370)
. + .+...-.+..+..++..|+..+|...+..++.. .+..-...++......|.++.++....++
T Consensus 398 ~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~--~~~~~~~~la~~A~~~g~~~~ai~~~~~~ 465 (644)
T PRK11619 398 APKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVAS--RSKTEQAQLARYAFNQQWWDLSVQATIAG 465 (644)
T ss_pred CCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCHHHHHHHHhhc
Confidence 0 1 011112344678888999999999999888875 34555667777788899999988877654
No 418
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=73.08 E-value=1e+02 Score=30.53 Aligned_cols=122 Identities=10% Similarity=0.068 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHH
Q 017532 190 YNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVG---DLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIY 266 (370)
Q Consensus 190 ~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~ 266 (370)
-+++..+|++++......+..+++.++.--...- ..+.-..++++++.+.. .+| +.++++.-...
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~---------~~~---tLv~~~~mn~i 376 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIED---------IDL---TLVYCQYMNFI 376 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhc---------cCC---ceehhHHHHHH
Confidence 5567777777766544233333444443222222 35666777888775432 244 33444444444
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH-HHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 267 LVGKDYVSAVREYEECIERDYNDIVAINNKA-LCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 267 ~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla-~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
.+..=...|...|.++-+..-.-..++..-| .=|..+++..-|..+|+-.+...++.
T Consensus 377 rR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~ 434 (656)
T KOG1914|consen 377 RRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDS 434 (656)
T ss_pred HHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCC
Confidence 4555567778888887654322223333333 33556899999999999999998874
No 419
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=72.83 E-value=52 Score=28.71 Aligned_cols=21 Identities=5% Similarity=0.305 Sum_probs=18.3
Q ss_pred HhcCCHHHHHHHHHHHHhCCC
Q 017532 185 LSSKEYNVCFDLMNESIGRGN 205 (370)
Q Consensus 185 ~~~g~~~~A~~~~~~~l~~~~ 205 (370)
+..|+|+.|+.+..-+|+.+-
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l 114 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGL 114 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCC
Confidence 356999999999999998875
No 420
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.87 E-value=38 Score=32.07 Aligned_cols=99 Identities=12% Similarity=0.090 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC----
Q 017532 211 LVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD---- 286 (370)
Q Consensus 211 ~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~---- 286 (370)
++..+|.=|...|+++.|++.|-++-..|... .+ ....+++.-.+.+..|+|.+-..+-.++...-
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~-------kh---vInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~ 221 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSA-------KH---VINMCLNLILVSIYMGNWGHVLSYISKAESTPDANE 221 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcch-------HH---HHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhh
Confidence 45677888999999999999999987654331 11 25567778888889999998877777776541
Q ss_pred ----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 287 ----YNDIVAINNKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 287 ----p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
.-.+.+..--|.+.+.++++..|.+++-.+..-
T Consensus 222 ~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~~~ 258 (466)
T KOG0686|consen 222 NLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAEFD 258 (466)
T ss_pred hHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 012234555677888888999999998776543
No 421
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=70.75 E-value=48 Score=25.83 Aligned_cols=85 Identities=7% Similarity=-0.005 Sum_probs=56.3
Q ss_pred CCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHH
Q 017532 223 GDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIER--DYNDIVAINNKALCL 300 (370)
Q Consensus 223 g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~--~p~~~~~~~nla~~~ 300 (370)
|.-..-...++++++...+.+. =..|+-. ..+|+..+. ...++.+.|..+... .-..+..|...|..+
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~---Y~nD~Ry-lkiWi~ya~------~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~l 109 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDER---YKNDERY-LKIWIKYAD------LSSDPREIFKFLYSKGIGTKLALFYEEWAEFL 109 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGG---GTT-HHH-HHHHHHHHT------TBSHHHHHHHHHHHHTTSTTBHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHh---hcCCHHH-HHHHHHHHH------HccCHHHHHHHHHHcCccHHHHHHHHHHHHHH
Confidence 4445556677777776655321 0224433 344433333 223888999988765 467788899999999
Q ss_pred HHhCCHHHHHHHHHHHH
Q 017532 301 MYLRDLSDSIKVLENAL 317 (370)
Q Consensus 301 ~~~g~~~~A~~~l~~al 317 (370)
...|++++|.++|+.+|
T Consensus 110 e~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 110 EKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHTT-HHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHhhC
Confidence 99999999999998875
No 422
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=70.66 E-value=90 Score=28.91 Aligned_cols=94 Identities=13% Similarity=0.168 Sum_probs=62.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCC---CCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHH
Q 017532 183 YHLSSKEYNVCFDLMNESIGRGN---GLDPIL--VSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNL 257 (370)
Q Consensus 183 ~~~~~g~~~~A~~~~~~~l~~~~---~~~~~~--~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~ 257 (370)
+.-+.+|.++|+++++++++.-. ..++.. ...+|++++..||+.++.+.++...+....- ....+...+.
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~-----~~v~~~Vh~~ 158 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSL-----DGVTSNVHSS 158 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcc-----cCCChhhhhh
Confidence 34455799999999999975432 123333 3678999999999999999999887654332 1455655344
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHH
Q 017532 258 VSRNKALIYLVGKDYVSAVREYEE 281 (370)
Q Consensus 258 ~~~~~g~~~~~~g~~~eA~~~~~~ 281 (370)
.+..-...|-..|++.....+.-+
T Consensus 159 fY~lssqYyk~~~d~a~yYr~~L~ 182 (380)
T KOG2908|consen 159 FYSLSSQYYKKIGDFASYYRHALL 182 (380)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 444455666677887766444333
No 423
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.30 E-value=1.2e+02 Score=30.23 Aligned_cols=129 Identities=12% Similarity=-0.068 Sum_probs=81.7
Q ss_pred CCHHHHHHHHHHHHhCCC-----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcC----Cc-c----CC
Q 017532 188 KEYNVCFDLMNESIGRGN-----------GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEG----KF-E----DG 247 (370)
Q Consensus 188 g~~~~A~~~~~~~l~~~~-----------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~----~~-~----~~ 247 (370)
..|++|...|.-++...+ ..+...+..++.+...+||.+.|....++++=....- .. . .-
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL 331 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL 331 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence 456666666665554332 1567888999999999999999999888876332210 00 0 11
Q ss_pred ccchHHHHHHH--HHhHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHH-HHhCCHHHHHHHHHHH
Q 017532 248 LLSEVEFRNLV--SRNKALIYLVGKDYVSAVREYEECIERDYN-DIVAINNKALCL-MYLRDLSDSIKVLENA 316 (370)
Q Consensus 248 ~~~~p~~~~~~--~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~-~~~~~~nla~~~-~~~g~~~~A~~~l~~a 316 (370)
.+..|.++... .+-.-..+...|=+..|.++++-.+.++|. ||.+...+...| ++..+|+=-|+.++..
T Consensus 332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 24455542111 111223345689999999999999999998 886655444433 4566677666666655
No 424
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=70.19 E-value=55 Score=28.58 Aligned_cols=106 Identities=15% Similarity=0.111 Sum_probs=64.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHH--HHHHHHHHhh-C-CCCHH-
Q 017532 217 FIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSA--VREYEECIER-D-YNDIV- 291 (370)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA--~~~~~~~l~~-~-p~~~~- 291 (370)
.-.+..|+++.|+...+.|++..-..+... ...-|.+.++-...-+...+..|+--+. ...+..+... + |+...
T Consensus 91 vW~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f-~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrA 169 (230)
T PHA02537 91 VWRFDIGDFDGALEIAEYALEHGLTMPDQF-RRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRA 169 (230)
T ss_pred eeeeeccCHHHHHHHHHHHHHcCCCCCccc-cCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHH
Confidence 345678999999999999997532211000 0234555455556667777777774322 1222222221 1 44444
Q ss_pred -HHHHHHHHHH---------HhCCHHHHHHHHHHHHHhCCCc
Q 017532 292 -AINNKALCLM---------YLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 292 -~~~nla~~~~---------~~g~~~~A~~~l~~al~~~p~~ 323 (370)
.+-..|..++ ..+++..|...|++|++++|+.
T Consensus 170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 4445565553 3467889999999999999974
No 425
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=69.93 E-value=57 Score=27.39 Aligned_cols=39 Identities=5% Similarity=0.030 Sum_probs=28.6
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 017532 258 VSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKA 297 (370)
Q Consensus 258 ~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla 297 (370)
+....-.++++.|+|++|.+.+++... +|++.....-|.
T Consensus 113 ik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~ 151 (200)
T cd00280 113 IKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLL 151 (200)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHH
Confidence 334455788999999999999999888 777665544443
No 426
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=69.53 E-value=68 Score=27.03 Aligned_cols=143 Identities=15% Similarity=0.098 Sum_probs=80.6
Q ss_pred HHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHhhcCCccCCcc
Q 017532 176 VLNCLIGYHL-SSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQM-----QVGDLEGAKKSFNRVEEMLNEGKFEDGLL 249 (370)
Q Consensus 176 ~~~~la~~~~-~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~-----~~g~~~~A~~~~~~a~~l~~~~~~~~~~~ 249 (370)
..+.|+..+- -+++|++|..+|..--..+ ..+..-+..|.-++ ..+++..|+..|..+-..
T Consensus 36 ~C~lLgdYlEgi~knF~~A~kv~K~nCden--~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~----------- 102 (248)
T KOG4014|consen 36 SCQLLGDYLEGIQKNFQAAVKVFKKNCDEN--SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA----------- 102 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccc--CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc-----------
Confidence 3344444333 2356777777666543332 23344444454332 245677788888777631
Q ss_pred chHHHHHHHHHhHHHHHHH-----cCC--HHHHHHHHHHHHhhCCCCHHHHHHHHHH-----------------------
Q 017532 250 SEVEFRNLVSRNKALIYLV-----GKD--YVSAVREYEECIERDYNDIVAINNKALC----------------------- 299 (370)
Q Consensus 250 ~~p~~~~~~~~~~g~~~~~-----~g~--~~eA~~~~~~~l~~~p~~~~~~~nla~~----------------------- 299 (370)
.. ..+-.++|+++.. .++ .++|..+++++.+++ +..+-++|...
T Consensus 103 n~----~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~ 176 (248)
T KOG4014|consen 103 NI----PQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAE 176 (248)
T ss_pred CC----HHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccchhhcccCCCCCCCcchhh
Confidence 12 2233445555543 222 567777777776553 33333333333
Q ss_pred -HHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccC
Q 017532 300 -LMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYV 342 (370)
Q Consensus 300 -~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~ 342 (370)
+.-+.+.+.|.++--+|-+++- .+.-.|++.+|-+...
T Consensus 177 ~~~~~kDMdka~qfa~kACel~~-----~~aCAN~SrMyklGDG 215 (248)
T KOG4014|consen 177 LGSLSKDMDKALQFAIKACELDI-----PQACANVSRMYKLGDG 215 (248)
T ss_pred hhhhhHhHHHHHHHHHHHHhcCC-----hHHHhhHHHHHHccCC
Confidence 3334677888888888877753 5777899999987544
No 427
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=68.35 E-value=16 Score=29.21 Aligned_cols=48 Identities=10% Similarity=-0.044 Sum_probs=37.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 017532 177 LNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDL 225 (370)
Q Consensus 177 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~ 225 (370)
....+.-.+..|+|.-|.++.+.++..+| ++..+...++.++.++|.-
T Consensus 73 vl~~A~~~~~~gd~~wA~~L~d~l~~adp-~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 73 VLERAQAALAAGDYQWAAELLDHLVFADP-DNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-T-T-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHHh
Confidence 34556677888999999999999999999 9999998888888777653
No 428
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=68.14 E-value=39 Score=23.79 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=13.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Q 017532 262 KALIYLVGKDYVSAVREYEECIER 285 (370)
Q Consensus 262 ~g~~~~~~g~~~eA~~~~~~~l~~ 285 (370)
.|.-.-..|+|++|+.+|.++|+.
T Consensus 12 ~Ave~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 12 RAVELDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHH
Confidence 444445566666666666665543
No 429
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.06 E-value=1.5e+02 Score=30.60 Aligned_cols=66 Identities=15% Similarity=0.144 Sum_probs=44.8
Q ss_pred CCCCcCC-----ChHhHHHHHHcCChHHHHHHHHHhhhccccCCchH-H-HHHHHHHHHHHhhhcCHHHHHHHhhhcC
Q 017532 24 SLNDLVP-----DLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHH-H-LTYLAYNTLALMKLRRFDEAQQELDSLE 94 (370)
Q Consensus 24 ~~~~~~~-----~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~-~-~~~~~~~~~al~~l~~~~~A~~~~~~~~ 94 (370)
+|+|+.- ....+.++++.+.|.+|++..+...+. .|.- . -.+..+ +--|+..|+|++|...+-.+.
T Consensus 347 spkDiV~a~~~~~~Dhi~Wll~~k~yeeAl~~~k~~~~~----~~~~~i~kv~~~y-I~HLl~~~~y~~Aas~~p~m~ 419 (846)
T KOG2066|consen 347 SPKDIVVAKERDQEDHIDWLLEKKKYEEALDAAKASIGN----EERFVIKKVGKTY-IDHLLFEGKYDEAASLCPKML 419 (846)
T ss_pred cCCceEEEeecCcchhHHHHHHhhHHHHHHHHHHhccCC----ccccchHHHHHHH-HHHHHhcchHHHHHhhhHHHh
Confidence 5577653 455999999999999999887774322 2210 0 122222 556788899999998877763
No 430
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=68.03 E-value=12 Score=26.66 Aligned_cols=38 Identities=21% Similarity=0.321 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 017532 188 KEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNE 241 (370)
Q Consensus 188 g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~ 241 (370)
+-|+.|....++++..+. .|+.++|+.+|+++++....
T Consensus 3 ~~~~~A~~~I~kaL~~dE----------------~g~~e~Al~~Y~~gi~~l~e 40 (79)
T cd02679 3 GYYKQAFEEISKALRADE----------------WGDKEQALAHYRKGLRELEE 40 (79)
T ss_pred hHHHHHHHHHHHHhhhhh----------------cCCHHHHHHHHHHHHHHHHH
Confidence 456777777777776665 48888899999888876443
No 431
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.66 E-value=82 Score=28.29 Aligned_cols=56 Identities=18% Similarity=0.178 Sum_probs=42.8
Q ss_pred HcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh
Q 017532 221 QVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIER 285 (370)
Q Consensus 221 ~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~ 285 (370)
...++++|++.|++++++.+. ..+.. -.++...-.+.+.+|+|++-.+.|++++..
T Consensus 39 ~e~~p~~Al~sF~kVlelEgE-------KgeWG--FKALKQmiKI~f~l~~~~eMm~~Y~qlLTY 94 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGE-------KGEWG--FKALKQMIKINFRLGNYKEMMERYKQLLTY 94 (440)
T ss_pred cccCHHHHHHHHHHHHhcccc-------cchhH--HHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 345899999999999987543 22333 345566778899999999999999998754
No 432
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=67.63 E-value=86 Score=27.50 Aligned_cols=56 Identities=13% Similarity=0.086 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHh
Q 017532 225 LEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIE 284 (370)
Q Consensus 225 ~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~ 284 (370)
.++|.+.|++|..+....- .+.+|-..+.++..--+.|-..|+.++|++.-++++.
T Consensus 142 ~~~a~~aY~~A~~~a~~~L----~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKEL----PPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHS----CTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhccc----CCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4789999999998877631 2667766344333333445669999999998887753
No 433
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.30 E-value=46 Score=31.82 Aligned_cols=112 Identities=9% Similarity=-0.051 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---------CC-HHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHhh
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNG---------LD-PILVSKLGFIQMQVGDL---EGAKKSFNRVEEMLN 240 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~---------~~-~~~~~~lg~~~~~~g~~---~~A~~~~~~a~~l~~ 240 (370)
..-++..|...+..+.|++|+.++-.+-+.... ++ +.+-..+.++|+.+.++ ++|..-+.++.+-+.
T Consensus 163 glg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~ 242 (568)
T KOG2561|consen 163 GLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFE 242 (568)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhh
Confidence 445667788888899999999888777544331 11 22224466777776543 455555555443322
Q ss_pred cCCcc-------CCccchHHH--HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh
Q 017532 241 EGKFE-------DGLLSEVEF--RNLVSRNKALIYLVGKDYVSAVREYEECIER 285 (370)
Q Consensus 241 ~~~~~-------~~~~~~p~~--~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~ 285 (370)
....+ -.....|+. .-..+...|.+.+.+|+-++|.++|+.+...
T Consensus 243 ~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~ 296 (568)
T KOG2561|consen 243 RSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAK 296 (568)
T ss_pred hhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 21110 001233432 1344566899999999999999999998654
No 434
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=65.89 E-value=42 Score=26.62 Aligned_cols=54 Identities=13% Similarity=0.166 Sum_probs=39.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017532 183 YHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEE 237 (370)
Q Consensus 183 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~ 237 (370)
++..+|+-++-..+++.+.+.+. .++..+..+|..|-+.|+..+|.+.+.+|-+
T Consensus 95 ~lv~~~kkDqLdki~~~l~kn~~-~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 95 ILVKQGKKDQLDKIYNELKKNEE-INPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHhhccC-CCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 44566777777788888877555 7889999999999999999999999999874
No 435
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=64.97 E-value=17 Score=24.77 Aligned_cols=25 Identities=32% Similarity=0.337 Sum_probs=15.8
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHh
Q 017532 260 RNKALIYLVGKDYVSAVREYEECIE 284 (370)
Q Consensus 260 ~~~g~~~~~~g~~~eA~~~~~~~l~ 284 (370)
...|.-.-..|++++|+.+|.++++
T Consensus 9 ~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 9 IKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3345555567777777777776654
No 436
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=63.89 E-value=61 Score=25.76 Aligned_cols=56 Identities=13% Similarity=0.023 Sum_probs=38.4
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 017532 266 YLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVP 321 (370)
Q Consensus 266 ~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p 321 (370)
+..+|+-++=-+.++.....+..++..+.-+|.+|.+.|+..+|-+.+.+|-+..-
T Consensus 96 lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 96 LVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34667766666666666665667889999999999999999999999999987643
No 437
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=62.71 E-value=15 Score=25.95 Aligned_cols=18 Identities=17% Similarity=0.241 Sum_probs=11.1
Q ss_pred HcCCHHHHHHHHHHHHHH
Q 017532 221 QVGDLEGAKKSFNRVEEM 238 (370)
Q Consensus 221 ~~g~~~~A~~~~~~a~~l 238 (370)
+.|++++|+.+|..+++.
T Consensus 18 ~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 18 QEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HccCHHHHHHHHHHHHHH
Confidence 356666666666666643
No 438
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.43 E-value=69 Score=33.30 Aligned_cols=54 Identities=15% Similarity=0.167 Sum_probs=34.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017532 182 GYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVE 236 (370)
Q Consensus 182 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~ 236 (370)
..++++.-|+-|+.+.+.- ..++..-......-|.-++..|++++|...|-+.+
T Consensus 342 ~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI 395 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETI 395 (933)
T ss_pred HHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHc
Confidence 4667777888888776543 11110112333455666677888888888888877
No 439
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.20 E-value=1.4e+02 Score=27.87 Aligned_cols=110 Identities=17% Similarity=0.073 Sum_probs=63.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhcC---Cc----cC---C-----------ccchHHHHHHHHHhHHHHHHHcCC
Q 017532 213 SKLGFIQMQVGDLEGAKKSFNRVEEMLNEG---KF----ED---G-----------LLSEVEFRNLVSRNKALIYLVGKD 271 (370)
Q Consensus 213 ~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~---~~----~~---~-----------~~~~p~~~~~~~~~~g~~~~~~g~ 271 (370)
..-|++++..||+.+....|..+....+.. .. .+ | ....-+. ..+.+.+|+-|+..++
T Consensus 62 L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g~~YE~-~~~n~YkaLNYm~~nD 140 (449)
T COG3014 62 LQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGGNIYEG-VLINYYKALNYMLLND 140 (449)
T ss_pred hhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCchhHHH-HHHHHHHHhhHHHhcc
Confidence 345888888888887777776654332211 00 00 0 0111122 4556678999999999
Q ss_pred HHHHHHHHHHHHhh------------------------CCCCH-----------HHHHHHHHHHHHhCCHHHHHHHHHHH
Q 017532 272 YVSAVREYEECIER------------------------DYNDI-----------VAINNKALCLMYLRDLSDSIKVLENA 316 (370)
Q Consensus 272 ~~eA~~~~~~~l~~------------------------~p~~~-----------~~~~nla~~~~~~g~~~~A~~~l~~a 316 (370)
++.|.-.|+++.+. +|+-. ..|.|+...|...+++--+-..|.++
T Consensus 141 ~~~ArVEfnRan~rQ~~AKe~~~~ei~ka~~e~ds~k~~~N~~~~~ae~s~~i~n~Y~ny~~~yea~~~l~npYv~Yl~~ 220 (449)
T COG3014 141 SAKARVEFNRANERQRRAKEFYYEEVQKAIKEIDSSKHNINMERSRAEVSEILNNTYSNYLDKYEAYQGLLNPYVSYLSG 220 (449)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHH
Confidence 99888888777554 22211 12445555555556666666666666
Q ss_pred HHhCCCc
Q 017532 317 LERVPTV 323 (370)
Q Consensus 317 l~~~p~~ 323 (370)
+-..|+.
T Consensus 221 lf~a~n~ 227 (449)
T COG3014 221 LFYALNG 227 (449)
T ss_pred HhcccCc
Confidence 6665554
No 440
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=62.15 E-value=17 Score=23.48 Aligned_cols=24 Identities=17% Similarity=0.502 Sum_probs=20.5
Q ss_pred hHhHHHHHHcCChHHHHHHHHHhh
Q 017532 32 LASLQDLATRGSWRTIIDNVSRAR 55 (370)
Q Consensus 32 ~~~l~~l~~~g~~~~Ai~~~~~~~ 55 (370)
...+...+..|+|++|++.+....
T Consensus 5 ~~~i~~~i~~g~~~~a~~~~~~~~ 28 (58)
T smart00668 5 RKRIRELILKGDWDEALEWLSSLK 28 (58)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcC
Confidence 457899999999999999888753
No 441
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=61.67 E-value=1.4e+02 Score=27.74 Aligned_cols=95 Identities=14% Similarity=0.175 Sum_probs=57.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC------
Q 017532 213 SKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD------ 286 (370)
Q Consensus 213 ~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~------ 286 (370)
+.+....++..+..+-++.-..++++ +|+. +.+++.++.- ...-..+|.+.|+++++..
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeI------------N~eC-A~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~ 252 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEI------------NNEC-ATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQ 252 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhc------------Cchh-hhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555555556666666667643 3433 3344434332 3333456666666665431
Q ss_pred --------C---------CCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 287 --------Y---------NDIVAI--NNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 287 --------p---------~~~~~~--~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
+ .+..+| ..+|.|..++|+..+|++.++...+..|-
T Consensus 253 sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl 307 (556)
T KOG3807|consen 253 SQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPL 307 (556)
T ss_pred HHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccH
Confidence 1 122222 46899999999999999999999888773
No 442
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=61.64 E-value=1.3e+02 Score=27.67 Aligned_cols=50 Identities=14% Similarity=0.133 Sum_probs=37.8
Q ss_pred hHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHH
Q 017532 32 LASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQE 89 (370)
Q Consensus 32 ~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~ 89 (370)
...+..++..|+.+.|-++.+.. . -|. --+||+++.+|+..+++++-..-
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~F-k-----v~d--krfw~lki~aLa~~~~w~eL~~f 230 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEF-K-----VPD--KRFWWLKIKALAENKDWDELEKF 230 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHc-C-----CcH--HHHHHHHHHHHHhcCCHHHHHHH
Confidence 34689999999999988776553 1 243 45667789999999999887653
No 443
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=61.36 E-value=1.4e+02 Score=30.71 Aligned_cols=57 Identities=14% Similarity=0.088 Sum_probs=38.4
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHH
Q 017532 295 NKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSW 354 (370)
Q Consensus 295 nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~ 354 (370)
..|.++..-|+-++|-.+.++++.-. ++.+...-.|.++..|- ..+....-+.+|..
T Consensus 506 ~vGiaL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~--GTgnnkair~lLh~ 562 (929)
T KOG2062|consen 506 AVGIALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYV--GTGNNKAIRRLLHV 562 (929)
T ss_pred HHhHHHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHh--ccCchhhHHHhhcc
Confidence 34567777888889988888887654 44556677777777774 44445565666553
No 444
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=61.19 E-value=16 Score=25.63 Aligned_cols=29 Identities=17% Similarity=0.055 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 291 VAINNKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 291 ~~~~nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
..+...|+-+-..|++.+|+.+|+++++.
T Consensus 7 ~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 7 RKYAINAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 34455667777777877777777766553
No 445
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=60.98 E-value=48 Score=25.83 Aligned_cols=60 Identities=17% Similarity=0.097 Sum_probs=47.8
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHhhCCC---------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 017532 259 SRNKALIYLVGKDYVSAVREYEECIERDYN---------------DIVAINNKALCLMYLRDLSDSIKVLENALE 318 (370)
Q Consensus 259 ~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~---------------~~~~~~nla~~~~~~g~~~~A~~~l~~al~ 318 (370)
+..+|...++.+++-.++-+|++++.+..+ ....-.|+|.-+...|+.+-.+++++-|-+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE 78 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASE 78 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHH
Confidence 566889999999999999999999876321 123456999999999999999999975543
No 446
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=60.81 E-value=1.4e+02 Score=27.71 Aligned_cols=132 Identities=11% Similarity=0.162 Sum_probs=76.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC--CCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccc
Q 017532 180 LIGYHLSSKEYNVCFDLMNESIGR--GNGLD-------PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLS 250 (370)
Q Consensus 180 la~~~~~~g~~~~A~~~~~~~l~~--~~~~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~ 250 (370)
.+......+++++++.++.+++.. ++..+ ......+|.++.+.|+.++=....+..-.....- .
T Consensus 10 ~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v-------~ 82 (411)
T KOG1463|consen 10 RAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSV-------S 82 (411)
T ss_pred HHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHh-------h
Confidence 344555667889999999999874 22122 2556889999999999887665555543222110 0
Q ss_pred hHHHHHHHH-HhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 251 EVEFRNLVS-RNKALIYLVGKDYVSAVREYEECIERDYNDI------VAINNKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 251 ~p~~~~~~~-~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~------~~~~nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
.+.. +.+. ...-.+....+..+.-+..+..+++---..- ..-..++..|...++|.+|+......++.
T Consensus 83 Kaka-aKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rE 157 (411)
T KOG1463|consen 83 KAKA-AKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRE 157 (411)
T ss_pred hHHH-HHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 1110 1110 1111222233444555555555554321111 22346788999999999999988877654
No 447
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=60.28 E-value=1.4e+02 Score=27.35 Aligned_cols=164 Identities=20% Similarity=0.185 Sum_probs=0.0
Q ss_pred hHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCC
Q 017532 32 LASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYP 111 (370)
Q Consensus 32 ~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~ 111 (370)
...++.++.+|+|.+.++.+++ .+..+|- .+.-.++-..++.++|.-+-|......+ ..|.+..|.+..
T Consensus 103 ~~~~~~~~~~~~~~~Ll~~~E~----sl~~~pf-WLDgq~~~~qal~~lG~~~~a~aI~~el------~~fL~RlP~L~~ 171 (301)
T TIGR03362 103 VADYQELLAQADWAALLQRVEQ----SLSLAPF-WLDGQRLSAQALERLGYAAVAQAIRDEL------AAFLERLPGLLE 171 (301)
T ss_pred HHHHHHHHhCCCHHHHHHHHHH----HHHhCch-hhHHHHHHHHHHHHCCCHHHHHHHHHHH------HHHHHhCcChhh
Q ss_pred CCCCcccchhHHHHHHHcCcccCC----------ccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHH
Q 017532 112 NRTGSMVPFSLRWLYAVLPIKLSN----------RQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLI 181 (370)
Q Consensus 112 ~~~~~~~~~~~r~l~a~~~~~~g~----------~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 181 (370)
-+.....||.--...+=+.-..+. ....-..+.++..........
T Consensus 172 L~F~DGtPFad~~T~~WL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~------------------------- 226 (301)
T TIGR03362 172 LKFSDGTPFADDETRAWLAQHATRSNAASVAPVAEVGEESDWEELREEARALAAE------------------------- 226 (301)
T ss_pred cccCCCCCCCCHHHHHHHHhcccccccccccccccCcccccHHHHHHHHHHHHHc-------------------------
Q ss_pred HHHHhcCCHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017532 182 GYHLSSKEYNVCFDLMNESIG--RGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEE 237 (370)
Q Consensus 182 ~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~ 237 (370)
+..+.|+..++..+. ..+++.......+++++.+.|..+-|...|++..+
T Consensus 227 ------~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~ 278 (301)
T TIGR03362 227 ------GGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAELAQQLYAALDQ 278 (301)
T ss_pred ------CCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 448
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=59.40 E-value=2.4e+02 Score=29.90 Aligned_cols=26 Identities=19% Similarity=0.211 Sum_probs=15.9
Q ss_pred cccCCccchHHHHHHHHHHHHHHHHH
Q 017532 131 IKLSNRQVGLDRFYELLDFVREKLAR 156 (370)
Q Consensus 131 ~~~g~~~~al~~l~~ll~~~~~~~~~ 156 (370)
+..|+...|.+++..+-+...+.+..
T Consensus 493 iEdG~ls~A~~~Lr~AQ~aL~eAL~~ 518 (851)
T TIGR02302 493 IEDGDLSDAERRLRAAQDALKDALER 518 (851)
T ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHc
Confidence 45577777777776665555555543
No 449
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=58.96 E-value=1.3e+02 Score=26.74 Aligned_cols=59 Identities=14% Similarity=0.021 Sum_probs=39.7
Q ss_pred hHHHHHHHcCCHHHHHHH----HHHHHhhCCCCHHHHHHHHH-HHHHhCCHHHHHHHHHHHHHh
Q 017532 261 NKALIYLVGKDYVSAVRE----YEECIERDYNDIVAINNKAL-CLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 261 ~~g~~~~~~g~~~eA~~~----~~~~l~~~p~~~~~~~nla~-~~~~~g~~~~A~~~l~~al~~ 319 (370)
..|.-++..|.-+++... +.....-.|.....+..+|+ .|+..|+...|...++.-++.
T Consensus 107 ~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 107 YEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 357777888887777655 22233446777877777775 566789999999988777766
No 450
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=58.83 E-value=76 Score=23.89 Aligned_cols=52 Identities=10% Similarity=-0.061 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 017532 172 REIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGD 224 (370)
Q Consensus 172 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~ 224 (370)
+........|..-+..||+..|...+.++-+..+ ...-.+..-++....+||
T Consensus 57 ~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~-~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 57 RKAQRALSRGLIALAEGDWQRAEKLLAKAAKLSD-NPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCC
Confidence 3345556677778888999999999999976654 444444444677777765
No 451
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.54 E-value=79 Score=32.90 Aligned_cols=40 Identities=15% Similarity=0.071 Sum_probs=32.9
Q ss_pred cchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh-CCC
Q 017532 249 LSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIER-DYN 288 (370)
Q Consensus 249 ~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~-~p~ 288 (370)
..+++....++...|.-++.+|++++|..+|-+.+.. +|.
T Consensus 361 ~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s 401 (933)
T KOG2114|consen 361 HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPS 401 (933)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChH
Confidence 3466666788888999999999999999999999864 453
No 452
>PRK10316 hypothetical protein; Provisional
Probab=58.36 E-value=1.2e+02 Score=25.95 Aligned_cols=60 Identities=13% Similarity=-0.111 Sum_probs=45.4
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHH-------HhhCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 017532 258 VSRNKALIYLVGKDYVSAVREYEEC-------IERDYNDI-VAINNKALCLMYLRDLSDSIKVLENAL 317 (370)
Q Consensus 258 ~~~~~g~~~~~~g~~~eA~~~~~~~-------l~~~p~~~-~~~~nla~~~~~~g~~~~A~~~l~~al 317 (370)
..+..++-.++.|+..+|++.++-+ +.+-|-.. ..-.+.+..++..|+|.+|-..+.++.
T Consensus 129 ~Ava~AN~~Lk~Gd~~~A~e~LklAgvdv~~~~al~PL~qT~~~V~~A~~ll~~gkyyeA~~aLk~a~ 196 (209)
T PRK10316 129 AAIKIANEKMAKGDKKGAMEELRLAGVGVMENQYLMPLKQTRNAVADAQKLLDKGKYYEANLALKGAE 196 (209)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHcCcchhhHhHhcCchhhHHHHHHHHHHHhCCChhHHHHHHHhhc
Confidence 4456899999999999999988764 22224332 334567889999999999999998874
No 453
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=58.35 E-value=1.6e+02 Score=27.41 Aligned_cols=121 Identities=11% Similarity=0.102 Sum_probs=76.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHH
Q 017532 189 EYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQ-----VGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKA 263 (370)
Q Consensus 189 ~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~-----~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g 263 (370)
-.+++...+.+++......-..+...++-++.. .-|+..=...|+-...+.++. .+..|.+
T Consensus 271 lI~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSP--------------vV~LNRA 336 (415)
T COG4941 271 LIDEGLALLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSP--------------VVTLNRA 336 (415)
T ss_pred HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCC--------------eEeehHH
Confidence 356777788888765541333444444444433 235555566666666554442 1234556
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 264 LIYLVGKDYVSAVREYEECIERD--YNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 264 ~~~~~~g~~~eA~~~~~~~l~~~--p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
...-+..=.+.++...+...+.. ......+.-.|..+.++|+.++|.+.|++++.+.++.
T Consensus 337 VAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ 398 (415)
T COG4941 337 VALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNA 398 (415)
T ss_pred HHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCCh
Confidence 55555555566666666655441 2334566678999999999999999999999998876
No 454
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=57.28 E-value=22 Score=25.25 Aligned_cols=27 Identities=22% Similarity=0.108 Sum_probs=17.4
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHhh
Q 017532 259 SRNKALIYLVGKDYVSAVREYEECIER 285 (370)
Q Consensus 259 ~~~~g~~~~~~g~~~eA~~~~~~~l~~ 285 (370)
.++.|..+-..|+.++|+.+|++++..
T Consensus 11 ~I~kaL~~dE~g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 11 EISKALRADEWGDKEQALAHYRKGLRE 37 (79)
T ss_pred HHHHHhhhhhcCCHHHHHHHHHHHHHH
Confidence 344555555667777777777777654
No 455
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=55.77 E-value=1.9e+02 Score=27.56 Aligned_cols=126 Identities=6% Similarity=-0.074 Sum_probs=90.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHH
Q 017532 188 KEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGD--LEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALI 265 (370)
Q Consensus 188 g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~ 265 (370)
.-.++-+.+...+++.+| ....+|+....++.+.+. +..=+...++++++.+.+. ..-+ ...+..+..
T Consensus 89 ~~ld~eL~~~~~~L~~np-ksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNf------h~W~---YRRfV~~~~ 158 (421)
T KOG0529|consen 89 ALLDEELKYVESALKVNP-KSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNF------HAWH---YRRFVVEQA 158 (421)
T ss_pred HhhHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccc------cchH---HHHHHHHHH
Confidence 456777888999999999 999999999999987764 5677888899997665542 1221 222333444
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH------hC------CHHHHHHHHHHHHHhCCCc
Q 017532 266 YLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMY------LR------DLSDSIKVLENALERVPTV 323 (370)
Q Consensus 266 ~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~------~g------~~~~A~~~l~~al~~~p~~ 323 (370)
........+=+++..++|..++.|-.+|+++...+.. .| .+..-++.-..|+-.+|++
T Consensus 159 ~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~D 228 (421)
T KOG0529|consen 159 ERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPED 228 (421)
T ss_pred hcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccc
Confidence 3344456777899999999999999999999876651 33 2344456666777788876
No 456
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=55.04 E-value=1.5e+02 Score=30.65 Aligned_cols=121 Identities=11% Similarity=0.073 Sum_probs=76.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHH
Q 017532 187 SKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQ---------VGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNL 257 (370)
Q Consensus 187 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~---------~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~ 257 (370)
-||-++|+...-.+++....-.++.+..-|++|-. .+..+.|+++|.++.+..|. ..
T Consensus 256 ~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~--------------~~ 321 (1226)
T KOG4279|consen 256 PGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPL--------------EY 321 (1226)
T ss_pred CccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCch--------------hh
Confidence 48899999998888877653666777777888843 56778999999999954332 23
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHH-HhhCC------------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 258 VSRNKALIYLVGKDYVSAVREYEEC-IERDY------------NDIVAINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 258 ~~~~~g~~~~~~g~~~eA~~~~~~~-l~~~p------------~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
+-+|++.++...|+.=+--..++++ +.++. ..+.+-..++ +-.-.+++.+|+..-+.+.++.|-
T Consensus 322 sGIN~atLL~aaG~~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~-asVLAnd~~kaiqAae~mfKLk~P 398 (1226)
T KOG4279|consen 322 SGINLATLLRAAGEHFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFE-ASVLANDYQKAIQAAEMMFKLKPP 398 (1226)
T ss_pred ccccHHHHHHHhhhhccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhh-hhhhccCHHHHHHHHHHHhccCCc
Confidence 3455666666666533322222222 22210 1111111122 223367899999999999999885
No 457
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=54.83 E-value=29 Score=32.11 Aligned_cols=109 Identities=12% Similarity=0.098 Sum_probs=75.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC---------CCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 017532 179 CLIGYHLSSKEYNVCFDLMNESIGRGN---------GLD---------PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLN 240 (370)
Q Consensus 179 ~la~~~~~~g~~~~A~~~~~~~l~~~~---------~~~---------~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~ 240 (370)
..+.-..+.++|..|..-|.+.++... ..+ .....+++.+-+..+.+..|+..-..+++
T Consensus 227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~--- 303 (372)
T KOG0546|consen 227 NIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALR--- 303 (372)
T ss_pred ccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccc---
Confidence 455667888899988888887765322 001 12234566677777777777766666653
Q ss_pred cCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 017532 241 EGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCL 300 (370)
Q Consensus 241 ~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~ 300 (370)
.++.. +.++.-+|..+....++++|++.++.+....|++......+..+-
T Consensus 304 ---------~~~s~-tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~ 353 (372)
T KOG0546|consen 304 ---------DERSK-TKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVR 353 (372)
T ss_pred ---------cChhh-CcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhh
Confidence 22333 556677999999999999999999999999999887655444433
No 458
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=54.54 E-value=31 Score=26.80 Aligned_cols=30 Identities=13% Similarity=0.104 Sum_probs=21.9
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 017532 261 NKALIYLVGKDYVSAVREYEECIERDYNDI 290 (370)
Q Consensus 261 ~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~ 290 (370)
.+|..++..|++++|..+|-+++...|+..
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~ 97 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQPA 97 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSSHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCHH
Confidence 367777788888888888888888776543
No 459
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=54.33 E-value=2.3e+02 Score=28.09 Aligned_cols=57 Identities=16% Similarity=0.085 Sum_probs=29.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHH
Q 017532 216 GFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECI 283 (370)
Q Consensus 216 g~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l 283 (370)
++++.+.|+.+.|...+.+.-. ...+.-+.+.....+.+.....++..|...+.+..
T Consensus 70 a~al~~e~k~~qA~~Ll~ql~~-----------~Ltd~Q~~~~~LL~ael~la~~q~~~Al~~L~~~~ 126 (604)
T COG3107 70 ARALVEEGKTAQAQALLNQLPQ-----------ELTDAQRAEKSLLAAELALAQKQPAAALQQLAKLL 126 (604)
T ss_pred HHHHHHcCChHHHHHHHHhccc-----------cCCHHHHHHHHHHHHHHHHhccChHHHHHHHhhcc
Confidence 4555566666666655555431 12233234444445556666666666666555543
No 460
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=53.57 E-value=37 Score=31.58 Aligned_cols=27 Identities=15% Similarity=0.260 Sum_probs=14.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 017532 214 KLGFIQMQVGDLEGAKKSFNRVEEMLN 240 (370)
Q Consensus 214 ~lg~~~~~~g~~~~A~~~~~~a~~l~~ 240 (370)
..|+-.+.++++++|...|..|..++.
T Consensus 46 ~~G~~~~~~~d~~~Avda~s~A~~l~~ 72 (400)
T KOG4563|consen 46 QAGRRALCNNDIDKAVDALSEATELSD 72 (400)
T ss_pred HhhhHHHhcccHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555543
No 461
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=53.10 E-value=1.9e+02 Score=26.84 Aligned_cols=91 Identities=13% Similarity=0.070 Sum_probs=60.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh-------CCCC
Q 017532 217 FIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIER-------DYND 289 (370)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~-------~p~~ 289 (370)
.+..+.+|.++|++++++..+.... ...|+-........|.++...|+..++.+.+...-.. .|+-
T Consensus 83 ~~~~~~~D~~~al~~Le~i~~~~~~-------~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~V 155 (380)
T KOG2908|consen 83 VVSEQISDKDEALEFLEKIIEKLKE-------YKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNV 155 (380)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHh-------hccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhh
Confidence 4556778999999999999876544 3344433667778899999999999998887776541 1223
Q ss_pred HHHHHHHHHHHHH-hCCHHHHHHHHH
Q 017532 290 IVAINNKALCLMY-LRDLSDSIKVLE 314 (370)
Q Consensus 290 ~~~~~nla~~~~~-~g~~~~A~~~l~ 314 (370)
..-+|.++.-|++ .|++...-...-
T Consensus 156 h~~fY~lssqYyk~~~d~a~yYr~~L 181 (380)
T KOG2908|consen 156 HSSFYSLSSQYYKKIGDFASYYRHAL 181 (380)
T ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3455556655543 566655444333
No 462
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=53.06 E-value=34 Score=24.07 Aligned_cols=24 Identities=25% Similarity=0.133 Sum_probs=16.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Q 017532 262 KALIYLVGKDYVSAVREYEECIER 285 (370)
Q Consensus 262 ~g~~~~~~g~~~eA~~~~~~~l~~ 285 (370)
.|.-.-..|+|++|+.+|..+++.
T Consensus 12 ~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 12 LAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 444555677777777777776653
No 463
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.81 E-value=3.1e+02 Score=29.11 Aligned_cols=29 Identities=7% Similarity=0.110 Sum_probs=21.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 017532 177 LNCLIGYHLSSKEYNVCFDLMNESIGRGN 205 (370)
Q Consensus 177 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 205 (370)
+..-.+.+++.+++..|..+..++++..|
T Consensus 1087 lrtA~n~ffK~kN~ktAs~fa~rLlel~~ 1115 (1202)
T KOG0292|consen 1087 LRTAMNVFFKLKNLKTAAEFARRLLELAP 1115 (1202)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCC
Confidence 33444677788888888888888888877
No 464
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.56 E-value=3.1e+02 Score=28.99 Aligned_cols=52 Identities=12% Similarity=0.141 Sum_probs=37.8
Q ss_pred hHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhc
Q 017532 34 SLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSL 93 (370)
Q Consensus 34 ~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~ 93 (370)
.=+.+...|+|++|++.+.. .|....+.+.-++..+++.+.|..|...+.+.
T Consensus 364 vWk~yLd~g~y~kAL~~ar~--------~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t 415 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIART--------RPDALETVLLKQADFLFQDKEYLRAAEIYAET 415 (911)
T ss_pred HHHHHHhcchHHHHHHhccC--------CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 44668899999999976533 25544445555677889999999998877665
No 465
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=52.17 E-value=2.1e+02 Score=27.08 Aligned_cols=56 Identities=9% Similarity=-0.016 Sum_probs=40.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCC----CCHHHHH--HHHHHHHHcCCHHHHHHHHHH
Q 017532 179 CLIGYHLSSKEYNVCFDLMNESIGRGNG----LDPILVS--KLGFIQMQVGDLEGAKKSFNR 234 (370)
Q Consensus 179 ~la~~~~~~g~~~~A~~~~~~~l~~~~~----~~~~~~~--~lg~~~~~~g~~~~A~~~~~~ 234 (370)
..+..+++.++|..|..+|+++...... .....+. ..|..++..-++++|.+++++
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 3445667789999999999999987541 1123333 345666889999999999985
No 466
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=52.05 E-value=29 Score=24.32 Aligned_cols=17 Identities=18% Similarity=0.175 Sum_probs=11.0
Q ss_pred cCCHHHHHHHHHHHHHH
Q 017532 222 VGDLEGAKKSFNRVEEM 238 (370)
Q Consensus 222 ~g~~~~A~~~~~~a~~l 238 (370)
.|++++|..+|.++++.
T Consensus 19 ~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 19 RGDAAAALSLYCSALQY 35 (75)
T ss_pred hccHHHHHHHHHHHHHH
Confidence 56666666666666644
No 467
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=51.56 E-value=1.2e+02 Score=23.79 Aligned_cols=74 Identities=11% Similarity=0.021 Sum_probs=50.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCc-cCCccchH-HHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh
Q 017532 212 VSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKF-EDGLLSEV-EFRNLVSRNKALIYLVGKDYVSAVREYEECIER 285 (370)
Q Consensus 212 ~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~-~~~~~~~p-~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~ 285 (370)
+..+|...++.+++-.++-+|++|+.+..+-.. ...+..+- ......-.|+|..+..+|+.+=.+++++-+-+.
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~ 79 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEK 79 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHH
Confidence 456788899999999999999999877544210 00000010 112344567999999999999999998766443
No 468
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.15 E-value=76 Score=33.28 Aligned_cols=46 Identities=17% Similarity=0.253 Sum_probs=38.8
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017532 185 LSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVE 236 (370)
Q Consensus 185 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~ 236 (370)
++-|+.+.|++...++ +++..|..||...+.+|+.+-|+.+|++.-
T Consensus 654 Le~gnle~ale~akkl------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~k 699 (1202)
T KOG0292|consen 654 LECGNLEVALEAAKKL------DDKDVWERLGEEALRQGNHQIAEMCYQRTK 699 (1202)
T ss_pred hhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 3458888888877766 788999999999999999999999998854
No 469
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=50.98 E-value=5.1 Score=39.88 Aligned_cols=117 Identities=11% Similarity=-0.026 Sum_probs=0.0
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHH
Q 017532 195 DLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVS 274 (370)
Q Consensus 195 ~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~e 274 (370)
.++.++-...+......+..-+..+++.|+++.|...+.+...- ...+..+.......+.+....|++++
T Consensus 10 ~yL~~A~~a~~~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~----------~L~~~q~~~~~Ll~A~lal~~~~~~~ 79 (536)
T PF04348_consen 10 QYLQQAQQASGEQRAQLLLLAARALLQEGDWAQAQALLNQLDPQ----------QLSPSQQARYQLLRARLALAQGDPEQ 79 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhcCcHhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccc----------cCChHHHHHHHHHHHHHHHhcCCHHH
Confidence 34444433333133344566688999999999999999887621 22333335666778999999999999
Q ss_pred HHHHHHHHH--hhCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 017532 275 AVREYEECI--ERDYN-DIVAINNKALCLMYLRDLSDSIKVLENALERVP 321 (370)
Q Consensus 275 A~~~~~~~l--~~~p~-~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p 321 (370)
|+..+...- .+.+. -...+-.+|.++...|+.-+|...+-.+-..-+
T Consensus 80 Al~~L~~~~~~~l~~~~~~~~~~l~A~a~~~~~~~l~Aa~~~i~l~~lL~ 129 (536)
T PF04348_consen 80 ALSLLNAQDLWQLPPEQQARYHQLRAQAYEQQGDPLAAARERIALDPLLP 129 (536)
T ss_dssp --------------------------------------------------
T ss_pred HHHHhccCCcccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcC
Confidence 999997521 11121 224555678889999998888887655544433
No 470
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=50.09 E-value=67 Score=26.96 Aligned_cols=47 Identities=17% Similarity=0.304 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 017532 192 VCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLN 240 (370)
Q Consensus 192 ~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~ 240 (370)
..++..++.++..| ++..+..++.++...|+.++|....+++..+.+
T Consensus 129 ~~~~~a~~~l~~~P--~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 129 AYIEWAERLLRRRP--DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 44455566666555 677888889999999999999999999987654
No 471
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=49.54 E-value=81 Score=31.30 Aligned_cols=72 Identities=14% Similarity=0.112 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHH
Q 017532 188 KEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYL 267 (370)
Q Consensus 188 g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~ 267 (370)
.+|--|+..+-++-+..| . -|+ ..++..|.+++...+.- +.+ ....-+..+|..++
T Consensus 274 ~~YPmALg~LadLeEi~p-t--------------~~r-~~~~~l~~~AI~sa~~~------Y~n--~HvYPYty~gg~~y 329 (618)
T PF05053_consen 274 ARYPMALGNLADLEEIDP-T--------------PGR-PTPLELFNEAISSARTY------YNN--HHVYPYTYLGGYYY 329 (618)
T ss_dssp TT-HHHHHHHHHHHHHS-----------------TTS---HHHHHHHHHHHHHHH------CTT----SHHHHHHHHHHH
T ss_pred hhCchhhhhhHhHHhhcc-C--------------CCC-CCHHHHHHHHHHHHHHH------hcC--CccccceehhhHHH
Confidence 456666666666665555 1 122 45677777777655442 111 11445666788888
Q ss_pred HcCCHHHHHHHHHHHH
Q 017532 268 VGKDYVSAVREYEECI 283 (370)
Q Consensus 268 ~~g~~~eA~~~~~~~l 283 (370)
+.++|.+|+..+-.+-
T Consensus 330 R~~~~~eA~~~Wa~aa 345 (618)
T PF05053_consen 330 RHKRYREALRSWAEAA 345 (618)
T ss_dssp HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888777663
No 472
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=49.50 E-value=1.2e+02 Score=23.59 Aligned_cols=59 Identities=7% Similarity=-0.113 Sum_probs=41.3
Q ss_pred chHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 017532 250 SEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD--YNDIVAINNKALCLMYLRDLSDSIKVLEN 315 (370)
Q Consensus 250 ~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~--p~~~~~~~nla~~~~~~g~~~~A~~~l~~ 315 (370)
.||-. ..+|+..+.. .+++.+.|..+.... -..+..|...|..+...|++.+|.++|+.
T Consensus 64 nD~Ry-LkiWi~ya~~------~~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 64 NDPRY-LKIWLKYADN------CDEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred CCHHH-HHHHHHHHHh------cCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 45554 4455444443 245677788777654 55667777889999999999999999864
No 473
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=49.44 E-value=3.5e+02 Score=28.71 Aligned_cols=19 Identities=47% Similarity=0.759 Sum_probs=13.4
Q ss_pred CCCc-ccCCC-CCCCcccccc
Q 017532 4 SPPV-CQNPS-RFTDPLTNAF 22 (370)
Q Consensus 4 ~~~~-~~~~~-~~~~~~~~~~ 22 (370)
|+|| +.-|. .|++|+..||
T Consensus 371 S~~~~~~LP~R~F~~PlArAv 391 (820)
T PF13779_consen 371 SEPVEMTLPERRFFNPLARAV 391 (820)
T ss_pred CCCeeeeCCCccCCCHHHHHH
Confidence 5555 33444 8999999998
No 474
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=49.10 E-value=1.5e+02 Score=25.03 Aligned_cols=63 Identities=16% Similarity=0.059 Sum_probs=48.6
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh-----CC--HHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Q 017532 269 GKDYVSAVREYEECIERDYNDIVAINNKALCLMYL-----RD--LSDSIKVLENALERVPTVALNETLVVNLCSMYE 338 (370)
Q Consensus 269 ~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~-----g~--~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lye 338 (370)
.++...|+..|..+.. -+++.+-.++|.++..- ++ ..+|..++.++-.+.- ...-|+|+++|-
T Consensus 86 ~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~~-----~~aCf~LS~m~~ 155 (248)
T KOG4014|consen 86 DASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLED-----GEACFLLSTMYM 155 (248)
T ss_pred ccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCCC-----chHHHHHHHHHh
Confidence 5678899999988876 56778888888776532 23 7789999999977754 567899999986
No 475
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=48.54 E-value=48 Score=22.49 Aligned_cols=27 Identities=15% Similarity=0.214 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 293 INNKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 293 ~~nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
+.+.|+-.-..|++++|+..|.++++.
T Consensus 8 ~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 8 LIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 345566777788999999988888654
No 476
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=48.48 E-value=36 Score=23.92 Aligned_cols=21 Identities=19% Similarity=0.052 Sum_probs=15.3
Q ss_pred HHHHcCCHHHHHHHHHHHHhh
Q 017532 265 IYLVGKDYVSAVREYEECIER 285 (370)
Q Consensus 265 ~~~~~g~~~eA~~~~~~~l~~ 285 (370)
---..|+|++|+.+|..+++.
T Consensus 15 ~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 15 DEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HhhHhhhHHHHHHHHHHHHHH
Confidence 333568888888888888765
No 477
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=48.42 E-value=1.3e+02 Score=23.46 Aligned_cols=86 Identities=9% Similarity=0.004 Sum_probs=60.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCC----------------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhH
Q 017532 264 LIYLVGKDYVSAVREYEECIERDY----------------NDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNE 327 (370)
Q Consensus 264 ~~~~~~g~~~eA~~~~~~~l~~~p----------------~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~ 327 (370)
.++...|+.+.-..+.++.-.++. .+..++...+.++...|++..|+++++...+..| -.+..
T Consensus 10 ~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~-I~i~~ 88 (126)
T PF12921_consen 10 YALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYP-IPIPK 88 (126)
T ss_pred HHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcC-CCCCH
Confidence 344467888877777766644431 2357888899999999999999999999999988 55557
Q ss_pred HHHHHHHHHHHhccCCchhhHHH
Q 017532 328 TLVVNLCSMYELAYVNHSDIKRT 350 (370)
Q Consensus 328 ~~~~nl~~lyel~~~~~~~~~~~ 350 (370)
.++.+|-..-...+......+..
T Consensus 89 ~~W~~Ll~W~~v~s~~~~~~~~~ 111 (126)
T PF12921_consen 89 EFWRRLLEWAYVLSSKREDRAAR 111 (126)
T ss_pred HHHHHHHHHHHHhcCCcccccHH
Confidence 77766665555555544333333
No 478
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=47.94 E-value=37 Score=23.66 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=10.8
Q ss_pred HcCCHHHHHHHHHHHHHH
Q 017532 221 QVGDLEGAKKSFNRVEEM 238 (370)
Q Consensus 221 ~~g~~~~A~~~~~~a~~l 238 (370)
..|++++|+.+|.++++.
T Consensus 18 ~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 18 NAGNYEEALRLYQHALEY 35 (75)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 356666666666666543
No 479
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=47.10 E-value=2.9e+02 Score=28.93 Aligned_cols=118 Identities=14% Similarity=0.072 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcC
Q 017532 191 NVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGK 270 (370)
Q Consensus 191 ~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g 270 (370)
++=+..++.-+.+++ .+......|-.++...|++++-...-.++.++.+- .|.+ ...|...=...-..+
T Consensus 96 ~~ei~t~~ee~ai~~-y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl---------~~~l-Wl~Wl~d~~~mt~s~ 164 (881)
T KOG0128|consen 96 NQEIRTLEEELAINS-YKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPL---------PPHL-WLEWLKDELSMTQSE 164 (881)
T ss_pred hhHHHHHHHHhcccc-cchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC---------ChHH-HHHHHHHHHhhccCc
Confidence 333444555555555 55555555666666667666555555555544332 2222 222222111222235
Q ss_pred CHHHHHHHHHHHHhhC--CCCHHHHHHH----HHHHHHhCCHHHHHHHHHHHHHh
Q 017532 271 DYVSAVREYEECIERD--YNDIVAINNK----ALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 271 ~~~eA~~~~~~~l~~~--p~~~~~~~nl----a~~~~~~g~~~~A~~~l~~al~~ 319 (370)
.-.++...|++++... +..+.-+.+. +.++..++.++.....|+++++.
T Consensus 165 ~~~~v~~~~ekal~dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s 219 (881)
T KOG0128|consen 165 ERKEVEELFEKALGDYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRS 219 (881)
T ss_pred chhHHHHHHHHHhcccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhh
Confidence 5566666666666432 2222111111 12234456666667777776654
No 480
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=46.78 E-value=2.4e+02 Score=26.13 Aligned_cols=106 Identities=16% Similarity=0.163 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017532 209 PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYN 288 (370)
Q Consensus 209 ~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~ 288 (370)
..++.++|.-|++.||-+.|.+.+.+..+-.-.. |...|- ....+-+|..|....-..+-++....+++...+
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~----g~kiDV---vf~~iRlglfy~D~~lV~~~iekak~liE~GgD 176 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSL----GHKIDV---VFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGD 176 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc----ccchhh---HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCC
Confidence 4677888999999999999999998866422111 112332 344556788877776666666666666666533
Q ss_pred CHHHHH----HHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 289 DIVAIN----NKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 289 ~~~~~~----nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
+.=.| -.|.-.+...++.+|-..|-..+.-..+
T Consensus 177 -WeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 177 -WERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred -hhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccc
Confidence 32222 2355566678899999888887765544
No 481
>PF13838 Clathrin_H_link: Clathrin-H-link; PDB: 2XZG_A 3GD1_I 1BPO_C 1C9I_B 1C9L_A.
Probab=45.49 E-value=36 Score=23.26 Aligned_cols=32 Identities=13% Similarity=0.397 Sum_probs=21.8
Q ss_pred hHhHHHHHHcCChHHHHHHHHHhhhccccCCch
Q 017532 32 LASLQDLATRGSWRTIIDNVSRARSQSLLTQPH 64 (370)
Q Consensus 32 ~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~ 64 (370)
...+..++..|+|.+|++.+...- .|+..+|.
T Consensus 10 ~~~F~~l~~~g~y~eAA~~AA~sP-~giLRt~~ 41 (66)
T PF13838_consen 10 VQQFNELFSQGQYEEAAKVAANSP-RGILRTPE 41 (66)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHSG-GGTT-SHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHhCc-cchhcCHH
Confidence 457889999999999999887742 23444443
No 482
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=45.30 E-value=76 Score=25.07 Aligned_cols=59 Identities=12% Similarity=0.059 Sum_probs=39.8
Q ss_pred HhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHH-HHHHHHhhhcCHHHHHHHhhh
Q 017532 33 ASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLA-YNTLALMKLRRFDEAQQELDS 92 (370)
Q Consensus 33 ~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~-~~~~al~~l~~~~~A~~~~~~ 92 (370)
..+...+..|+++.|++.+......-...++. ..+.+. .+..-+++.|...+|....+.
T Consensus 6 ~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~~-L~f~L~~q~fiell~~~~~~~Ai~y~r~ 65 (145)
T PF10607_consen 6 KKIRQAILNGDIDPAIEWLNENFPELLKRNSS-LEFELRCQQFIELLREGDIMEAIEYARK 65 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHHcCHHHHhcCCc-hhHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 47888999999999999888753222222333 222222 234568888999999988776
No 483
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=44.79 E-value=87 Score=32.23 Aligned_cols=99 Identities=17% Similarity=0.058 Sum_probs=71.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHH--cCCHHHHHHHHHHHHHHhhcCCccCCccchHHHH
Q 017532 181 IGYHLSSKEYNVCFDLMNESIGRGNGLDP---ILVSKLGFIQMQ--VGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFR 255 (370)
Q Consensus 181 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~---~~~~~lg~~~~~--~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~ 255 (370)
++.++..++|..|.--|...+..-|.++. ....+.+.++++ .|++.+++...+-+.. ..|.+
T Consensus 60 ~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~------------~~p~i- 126 (748)
T KOG4151|consen 60 GNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALE------------SQPRI- 126 (748)
T ss_pred hhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhh------------ccchH-
Confidence 35677788888887777777776663333 333555666655 5678888888777773 45555
Q ss_pred HHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 017532 256 NLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVA 292 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~ 292 (370)
..++.-++.+|...++++-|++.+.-+...+|.+..+
T Consensus 127 ~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~ 163 (748)
T KOG4151|consen 127 SKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSA 163 (748)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchH
Confidence 6666778899999999999999987777888988543
No 484
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.16 E-value=3.5e+02 Score=27.20 Aligned_cols=137 Identities=13% Similarity=0.015 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC------C---------CCH---HHHHHHHHHHHHcCCHHHHHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIG-----RGN------G---------LDP---ILVSKLGFIQMQVGDLEGAKKS 231 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~-----~~~------~---------~~~---~~~~~lg~~~~~~g~~~~A~~~ 231 (370)
..+..++.+....|+.+-|-.+.++++= ..| + .+- -+++.--.-..+.|-+..|.++
T Consensus 285 dsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~ 364 (665)
T KOG2422|consen 285 DSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEW 364 (665)
T ss_pred hHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 4455777778888888877777666642 111 0 001 1223333445568999999999
Q ss_pred HHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhCC----
Q 017532 232 FNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD--YNDIVAINNKALCLMYLRD---- 305 (370)
Q Consensus 232 ~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~--p~~~~~~~nla~~~~~~g~---- 305 (370)
++-.+++.+.. +|- .+...+-....+..+|+==|+.++..-..+ ..-+..-+.+|+++..+.+
T Consensus 365 cKlllsLdp~e--------DPl---~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~ 433 (665)
T KOG2422|consen 365 CKLLLSLDPSE--------DPL---GILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEED 433 (665)
T ss_pred HHHHhhcCCcC--------Cch---hHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChh
Confidence 99888775541 442 122222333344555555555554442221 1112233445555555433
Q ss_pred -HHHHHHHHHHHHHhCCC
Q 017532 306 -LSDSIKVLENALERVPT 322 (370)
Q Consensus 306 -~~~A~~~l~~al~~~p~ 322 (370)
-+.|...+.+|+...|.
T Consensus 434 ~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 434 DRQSALNALLQALKHHPL 451 (665)
T ss_pred hHHHHHHHHHHHHHhCcH
Confidence 34688888999998883
No 485
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=43.55 E-value=1.4e+02 Score=22.64 Aligned_cols=42 Identities=12% Similarity=0.038 Sum_probs=21.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 017532 186 SSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGA 228 (370)
Q Consensus 186 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A 228 (370)
.....++|..+.+-+-..+. ....+.......++++|+|++|
T Consensus 18 G~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A 59 (116)
T PF09477_consen 18 GHHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA 59 (116)
T ss_dssp TTT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH
T ss_pred hhHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH
Confidence 34455566666555554444 3333334445556666666665
No 486
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=43.40 E-value=77 Score=30.18 Aligned_cols=113 Identities=13% Similarity=0.173 Sum_probs=62.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 017532 213 SKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVA 292 (370)
Q Consensus 213 ~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~ 292 (370)
..|-+++.-+||+.. --+.+++.+.... ...|. ..+.+..|..|+.+++|.+|+..|-.++-.-...-..
T Consensus 239 ~GLlR~H~lLgDhQa----t~q~idi~pk~iy----~t~p~--c~VTY~VGFayLmmrryadai~~F~niLlyIqrtks~ 308 (525)
T KOG3677|consen 239 LGLLRMHILLGDHQA----TSQILDIMPKEIY----GTEPM--CRVTYQVGFAYLMMRRYADAIRVFLNILLYIQRTKSM 308 (525)
T ss_pred HHHHHHHHHhhhhHh----hhhhhhcCchhhc----Ccccc--eeEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344466677899544 2233444343221 22333 2334678999999999999999998887542111122
Q ss_pred HHHHHHHHHH-hCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 017532 293 INNKALCLMY-LRDLSDSIKVLENALERVPTVALNETLVVNLCSM 336 (370)
Q Consensus 293 ~~nla~~~~~-~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~l 336 (370)
+...+.++-. .++.+.--..+.-++...|. -+.+++...++.-
T Consensus 309 ~~~~~y~~d~inKq~eqm~~llai~l~~yPq-~iDESi~s~l~Ek 352 (525)
T KOG3677|consen 309 FSRTTYQYDMINKQNEQMHHLLAICLSMYPQ-MIDESIHSQLAEK 352 (525)
T ss_pred hcchhhhHhhhhhhHHHHHHHHHHHHHhCch-hhhHHHHHHHHHH
Confidence 2233333333 23455555555666777773 2445655555544
No 487
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.37 E-value=1.4e+02 Score=22.37 Aligned_cols=45 Identities=9% Similarity=-0.030 Sum_probs=35.2
Q ss_pred HHHHHhhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 279 YEECIERD-YNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 279 ~~~~l~~~-p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
++++-..+ +-.+-.+..+|..|...|+-+.|+.-|+.--.+.|..
T Consensus 60 ~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES 105 (121)
T COG4259 60 LEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPES 105 (121)
T ss_pred HHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccc
Confidence 44443333 4455678889999999999999999999988888875
No 488
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=42.79 E-value=1.1e+02 Score=21.17 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=15.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Q 017532 262 KALIYLVGKDYVSAVREYEECIER 285 (370)
Q Consensus 262 ~g~~~~~~g~~~eA~~~~~~~l~~ 285 (370)
.|.-.-..|++++|+.+|.++++.
T Consensus 12 ~Av~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 12 KAIEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444455667777777777776654
No 489
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=42.48 E-value=2.7e+02 Score=25.42 Aligned_cols=105 Identities=17% Similarity=0.128 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017532 209 PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYN 288 (370)
Q Consensus 209 ~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~ 288 (370)
..++.++|.-|.+.+|.+.+.+...+..+-.-.. +...+- -...+-+|.+|-.+.-.++-++....+++...+
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~st----g~KiDv---~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgD 187 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMST----GLKIDV---FLCKIRLGLIYGDRKVVEESLEVADDIIEKGGD 187 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhc----ccchhh---HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCC
Confidence 5788999999999999999999998877532221 223332 333455788887777778888888888887643
Q ss_pred CHHH----HHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 017532 289 DIVA----INNKALCLMYLRDLSDSIKVLENALERVP 321 (370)
Q Consensus 289 ~~~~----~~nla~~~~~~g~~~~A~~~l~~al~~~p 321 (370)
+.- -...|+-.+...++.+|-..+...+.-..
T Consensus 188 -WeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 188 -WERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred -HHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 322 22346666677889999888877765443
No 490
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=41.89 E-value=2.2e+02 Score=24.27 Aligned_cols=66 Identities=15% Similarity=0.166 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHhh
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLG-FIQMQVGDLEGAKKSFNRVEEMLN 240 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg-~~~~~~g~~~~A~~~~~~a~~l~~ 240 (370)
..++..+-...+..||++.|-..+--+++..+ -|....-.+| .++.+.+.-....++++......+
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~-VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~ 107 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCPE-VDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYP 107 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCCC-CChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHH
Confidence 34555666677788999999999999999877 5555444444 677777776666688877765543
No 491
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=41.83 E-value=95 Score=33.65 Aligned_cols=45 Identities=18% Similarity=0.247 Sum_probs=28.5
Q ss_pred CCCCCCCccccccCCCCCcC---CChHhHHHHHHcCChHHHHHHHHHh
Q 017532 10 NPSRFTDPLTNAFGSLNDLV---PDLASLQDLATRGSWRTIIDNVSRA 54 (370)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~---~~~~~l~~l~~~g~~~~Ai~~~~~~ 54 (370)
.|..+...+|..-||+-=+- .-...++.++..++|.+|++.+.+.
T Consensus 656 ~~~ka~VvLQ~~RGNLEtI~pR~lVLa~vr~~l~~~~y~~AF~~~Rkh 703 (1265)
T KOG1920|consen 656 VPQKAAVVLQMPRGNLETIYPRILVLAKVRTLLDRLRYKEAFEVMRKH 703 (1265)
T ss_pred ccchhhHhHhhcCCCceeechhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444332222 2456889999999999999888774
No 492
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=41.52 E-value=65 Score=22.29 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=15.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Q 017532 262 KALIYLVGKDYVSAVREYEECIER 285 (370)
Q Consensus 262 ~g~~~~~~g~~~eA~~~~~~~l~~ 285 (370)
.|.-.-..|++++|+.+|..+++.
T Consensus 12 ~Av~~D~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 12 QAVKEDEDGNYEEALELYKEALDY 35 (75)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444455557777777777766543
No 493
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=41.14 E-value=1.9e+02 Score=27.41 Aligned_cols=63 Identities=21% Similarity=0.135 Sum_probs=48.0
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHHHHHhh-CCCC-HHHHHHHHHHHH--HhCCHHHHHHHHHHHHHh
Q 017532 257 LVSRNKALIYLVGKDYVSAVREYEECIER-DYND-IVAINNKALCLM--YLRDLSDSIKVLENALER 319 (370)
Q Consensus 257 ~~~~~~g~~~~~~g~~~eA~~~~~~~l~~-~p~~-~~~~~nla~~~~--~~g~~~~A~~~l~~al~~ 319 (370)
......+.-++..++|..|...|+.+... .+.. ...+..++.+|. ..-++.+|.+.+++.+..
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 44566788889999999999999999985 3333 245666666665 467799999999988765
No 494
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=40.84 E-value=63 Score=18.02 Aligned_cols=13 Identities=23% Similarity=0.427 Sum_probs=5.8
Q ss_pred CHHHHHHHHHHHH
Q 017532 305 DLSDSIKVLENAL 317 (370)
Q Consensus 305 ~~~~A~~~l~~al 317 (370)
+..+|+..++++.
T Consensus 20 d~~~A~~~~~~Aa 32 (36)
T smart00671 20 DLEKALEYYKKAA 32 (36)
T ss_pred CHHHHHHHHHHHH
Confidence 4444444444443
No 495
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=40.28 E-value=2.6e+02 Score=28.17 Aligned_cols=57 Identities=21% Similarity=0.073 Sum_probs=47.5
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 017532 257 LVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLEN 315 (370)
Q Consensus 257 ~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~ 315 (370)
......+..+-.-|+.+.|-.+|++.+..+|+ ..++-.|.-+.+.|-..+|...+.+
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (578)
T PRK15490 43 LAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILKK 99 (578)
T ss_pred HHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHHH
Confidence 34455677777889999999999999999998 6677778889999999999988873
No 496
>PF12931 Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_C.
Probab=40.02 E-value=2.8e+02 Score=24.99 Aligned_cols=102 Identities=17% Similarity=0.028 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHH---HHHHHHHHh
Q 017532 208 DPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSA---VREYEECIE 284 (370)
Q Consensus 208 ~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA---~~~~~~~l~ 284 (370)
+...+..+|..+.+.|+...|.-+|--+-........ ..++.. . ...+|. ....-.++ -+.|+-+..
T Consensus 115 ~~~~l~~LGd~L~~~g~~~aA~iCYllag~~~~~~~~----~~~~~~-~--~~llg~---~~~~~~~~~~~tEiyEya~~ 184 (284)
T PF12931_consen 115 DSQALCALGDRLWQRGRVEAAHICYLLAGNPLSPIPW----LDDSNS-R--FSLLGA---SSFASPEAIILTEIYEYALS 184 (284)
T ss_dssp SS-TT--HHHHHHHTT-HHHHHHHHHHTT---SSSBS----STTS---B----SSS------TTSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCcchhHHHHhHcCCccCCccc----ccccch-h--hhhccC---CccccHHHHHHHHHHHHHHH
Confidence 3345566999999999999998888755111111000 011110 0 000111 00000011 145666655
Q ss_pred h---CC-----CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 285 R---DY-----NDIVAINNKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 285 ~---~p-----~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
. +| .-.......|.++...|..++|.++++.+...
T Consensus 185 l~~~~~~~~~~~l~~~Kl~yA~~Lae~G~~~~A~kY~d~i~~~ 227 (284)
T PF12931_consen 185 LSSNNPQFGLPHLQPYKLQYASLLAEQGLLSEALKYCDAIASS 227 (284)
T ss_dssp T---STT---CCCHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hhccCCCcCcHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 5 33 33345567899999999999999999976543
No 497
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=39.84 E-value=68 Score=22.42 Aligned_cols=24 Identities=17% Similarity=0.099 Sum_probs=13.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Q 017532 262 KALIYLVGKDYVSAVREYEECIER 285 (370)
Q Consensus 262 ~g~~~~~~g~~~eA~~~~~~~l~~ 285 (370)
.|.-.-..|++++|+.+|..+++.
T Consensus 12 ~Av~~D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 12 QAVKKDQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHH
Confidence 334444556677776666666543
No 498
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=39.77 E-value=1.7e+02 Score=29.37 Aligned_cols=92 Identities=13% Similarity=0.172 Sum_probs=56.2
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchh
Q 017532 267 LVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSD 346 (370)
Q Consensus 267 ~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~ 346 (370)
+...+|.-|++...+. .-+...+|..-|.+.++.+++..|.+-|.++++....+ ...+++.+-.+.+=......+
T Consensus 567 ie~ErYqlaV~mckKc---~iD~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkged--ipdvi~diin~ieGgpp~dVq 641 (1141)
T KOG1811|consen 567 IEAERYQLAVEMCKKC---GIDTFGAWHAWGLACLKAENLAAAREKFKQAFKLKGED--IPDVIFDIINLIEGGPPRDVQ 641 (1141)
T ss_pred HHHHHHHHHHHHHhhc---CCCcccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCc--cchHHHHHHHhhcCCCcchHH
Confidence 3444444454444432 23445677778888888888888888888888775433 256677776666522223345
Q ss_pred hHHHHHHHHhhhCCCCC
Q 017532 347 IKRTLSSWIGRVAPDDF 363 (370)
Q Consensus 347 ~~~~ll~~~~~~~~d~~ 363 (370)
.-+.+++-+.+-.|.-+
T Consensus 642 ~Vrem~dhlak~aptil 658 (1141)
T KOG1811|consen 642 DVREMLDHLAKPAPTIL 658 (1141)
T ss_pred HHHHHHHHhccCCcccc
Confidence 66666666666555443
No 499
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=39.71 E-value=1.3e+02 Score=20.84 Aligned_cols=26 Identities=35% Similarity=0.340 Sum_probs=16.9
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHhh
Q 017532 260 RNKALIYLVGKDYVSAVREYEECIER 285 (370)
Q Consensus 260 ~~~g~~~~~~g~~~eA~~~~~~~l~~ 285 (370)
+..|...-..|++++|+.+|.++++.
T Consensus 12 i~~Av~~d~~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 12 ISKALKADEAGDYEEALELYKKAIEY 37 (77)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33455555677777777777777654
No 500
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=39.46 E-value=73 Score=29.91 Aligned_cols=48 Identities=10% Similarity=-0.003 Sum_probs=41.8
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 017532 269 GKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENA 316 (370)
Q Consensus 269 ~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~a 316 (370)
.+..-+|+..++.++..+|.|......+..+|...|-.+.|...|...
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 445567888999999999999999999999999999999999988754
Done!