Query 017532
Match_columns 370
No_of_seqs 280 out of 3317
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 15:57:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017532.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017532hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 99.9 1.2E-23 4.2E-28 197.5 27.8 217 127-362 142-372 (388)
2 1w3b_A UDP-N-acetylglucosamine 99.9 6.2E-23 2.1E-27 192.7 29.2 288 32-362 37-338 (388)
3 2y4t_A DNAJ homolog subfamily 99.9 1.9E-22 6.6E-27 192.6 29.5 320 1-362 1-362 (450)
4 3ieg_A DNAJ homolog subfamily 99.9 4.7E-21 1.6E-25 176.4 32.5 293 32-363 7-340 (359)
5 4eqf_A PEX5-related protein; a 99.9 2.6E-22 8.9E-27 186.7 24.1 267 26-342 63-342 (365)
6 3mkr_A Coatomer subunit epsilo 99.9 1.7E-21 5.7E-26 176.6 28.4 261 34-363 5-269 (291)
7 3hym_B Cell division cycle pro 99.9 3.2E-22 1.1E-26 182.5 22.5 284 24-340 18-317 (330)
8 3hym_B Cell division cycle pro 99.9 1.5E-21 5E-26 178.0 26.6 253 24-307 52-322 (330)
9 2xpi_A Anaphase-promoting comp 99.9 6.6E-22 2.3E-26 195.8 23.3 277 28-338 305-595 (597)
10 2y4t_A DNAJ homolog subfamily 99.9 1.2E-20 4E-25 180.2 29.9 282 24-336 56-372 (450)
11 3ieg_A DNAJ homolog subfamily 99.9 1.8E-20 6.3E-25 172.4 29.6 291 24-339 33-352 (359)
12 2xpi_A Anaphase-promoting comp 99.9 1.4E-20 4.9E-25 186.2 27.4 282 37-362 281-583 (597)
13 3cv0_A Peroxisome targeting si 99.9 1.9E-21 6.4E-26 177.1 19.2 277 26-354 19-311 (327)
14 3fp2_A TPR repeat-containing p 99.9 4.7E-20 1.6E-24 179.9 27.9 285 32-361 29-410 (537)
15 1fch_A Peroxisomal targeting s 99.9 1.1E-20 3.6E-25 175.5 22.2 279 28-351 64-352 (368)
16 3vtx_A MAMA; tetratricopeptide 99.9 5.1E-20 1.7E-24 154.4 22.3 169 174-361 5-173 (184)
17 2pl2_A Hypothetical conserved 99.9 1.2E-20 4.2E-25 163.3 18.4 187 127-353 12-209 (217)
18 2pl2_A Hypothetical conserved 99.9 1E-19 3.5E-24 157.5 23.5 169 175-363 6-185 (217)
19 4gyw_A UDP-N-acetylglucosamine 99.9 3.1E-20 1.1E-24 187.4 22.1 162 174-354 9-170 (723)
20 2gw1_A Mitochondrial precursor 99.9 1.3E-19 4.6E-24 175.3 25.5 169 174-362 237-405 (514)
21 1fch_A Peroxisomal targeting s 99.9 2.9E-20 1E-24 172.5 19.6 266 38-361 35-317 (368)
22 2h6f_A Protein farnesyltransfe 99.8 4.5E-20 1.5E-24 173.3 19.3 246 31-338 100-364 (382)
23 4eqf_A PEX5-related protein; a 99.8 2.6E-20 8.9E-25 173.2 16.8 236 70-361 68-313 (365)
24 3uq3_A Heat shock protein STI1 99.8 1.1E-19 3.7E-24 159.6 19.7 228 33-320 10-237 (258)
25 2h6f_A Protein farnesyltransfe 99.8 3.4E-20 1.2E-24 174.1 17.1 243 60-360 91-350 (382)
26 3fp2_A TPR repeat-containing p 99.8 1E-18 3.4E-23 170.4 27.2 319 24-362 55-461 (537)
27 2gw1_A Mitochondrial precursor 99.8 8.4E-19 2.9E-23 169.7 25.9 314 30-362 41-448 (514)
28 3u4t_A TPR repeat-containing p 99.8 2.3E-19 7.8E-24 159.4 20.1 248 31-336 6-264 (272)
29 3vtx_A MAMA; tetratricopeptide 99.8 1.3E-19 4.4E-24 151.9 16.6 163 127-323 12-174 (184)
30 4ga2_A E3 SUMO-protein ligase 99.8 3.8E-20 1.3E-24 150.7 11.9 143 179-338 2-145 (150)
31 3uq3_A Heat shock protein STI1 99.8 5E-18 1.7E-22 148.9 25.4 231 69-359 7-237 (258)
32 4i17_A Hypothetical protein; T 99.8 1.4E-18 4.8E-23 150.8 20.7 149 175-339 8-165 (228)
33 2q7f_A YRRB protein; TPR, prot 99.8 4.4E-19 1.5E-23 154.6 17.5 146 175-337 92-237 (243)
34 3cv0_A Peroxisome targeting si 99.8 2.4E-19 8.1E-24 163.1 16.3 252 25-322 52-318 (327)
35 3mkr_A Coatomer subunit epsilo 99.8 4.2E-18 1.4E-22 154.2 23.0 227 33-323 39-268 (291)
36 2q7f_A YRRB protein; TPR, prot 99.8 4.7E-18 1.6E-22 148.0 21.6 198 126-362 29-226 (243)
37 2ho1_A Type 4 fimbrial biogene 99.8 1.1E-17 3.8E-22 146.9 24.0 201 126-363 43-243 (252)
38 3qky_A Outer membrane assembly 99.8 3.3E-18 1.1E-22 151.8 20.7 178 174-362 15-228 (261)
39 3sf4_A G-protein-signaling mod 99.8 6.7E-18 2.3E-22 158.2 23.7 269 33-339 14-319 (406)
40 4a1s_A PINS, partner of inscut 99.8 2.4E-18 8.3E-23 162.2 20.1 283 33-355 53-369 (411)
41 2vq2_A PILW, putative fimbrial 99.8 1.3E-17 4.4E-22 143.2 22.9 201 126-363 14-216 (225)
42 2ho1_A Type 4 fimbrial biogene 99.8 1E-17 3.5E-22 147.1 22.4 209 62-323 32-242 (252)
43 4i17_A Hypothetical protein; T 99.8 2.7E-18 9.1E-23 149.1 18.3 182 126-337 13-224 (228)
44 3ro2_A PINS homolog, G-protein 99.8 3.5E-18 1.2E-22 155.2 19.5 285 33-357 10-331 (338)
45 4g1t_A Interferon-induced prot 99.8 2.4E-17 8.2E-22 158.3 26.0 301 34-360 57-403 (472)
46 3u4t_A TPR repeat-containing p 99.8 2.6E-18 8.9E-23 152.6 16.9 239 72-362 8-254 (272)
47 4gco_A Protein STI-1; structur 99.8 6.3E-18 2.1E-22 133.3 15.5 120 200-336 5-124 (126)
48 4abn_A Tetratricopeptide repea 99.8 1.1E-17 3.7E-22 161.9 20.5 177 125-339 107-304 (474)
49 4gyw_A UDP-N-acetylglucosamine 99.8 1.9E-18 6.6E-23 174.4 15.7 162 127-322 16-177 (723)
50 3as5_A MAMA; tetratricopeptide 99.8 5E-17 1.7E-21 134.9 21.6 170 174-362 8-177 (186)
51 3gyz_A Chaperone protein IPGC; 99.8 1.3E-18 4.3E-23 141.7 11.0 118 192-323 20-137 (151)
52 2yhc_A BAMD, UPF0169 lipoprote 99.8 3.8E-17 1.3E-21 141.9 21.1 178 175-365 5-220 (225)
53 2vq2_A PILW, putative fimbrial 99.8 9.3E-17 3.2E-21 137.8 23.4 208 62-323 4-215 (225)
54 3urz_A Uncharacterized protein 99.8 3.1E-17 1.1E-21 140.8 18.3 129 175-317 5-151 (208)
55 1qqe_A Vesicular transport pro 99.8 4E-17 1.4E-21 147.6 19.8 187 131-338 48-249 (292)
56 4abn_A Tetratricopeptide repea 99.8 3.3E-17 1.1E-21 158.4 20.2 169 174-362 102-291 (474)
57 3sf4_A G-protein-signaling mod 99.8 1.6E-17 5.4E-22 155.7 17.1 282 33-342 52-362 (406)
58 4gco_A Protein STI-1; structur 99.7 4.2E-17 1.4E-21 128.5 15.9 113 174-300 13-125 (126)
59 3ulq_A Response regulator aspa 99.7 1.5E-16 5E-21 149.2 21.6 259 28-321 12-295 (383)
60 2pzi_A Probable serine/threoni 99.7 1.2E-17 4.2E-22 168.5 14.9 146 175-338 434-579 (681)
61 1ouv_A Conserved hypothetical 99.7 2E-16 7E-21 141.0 20.0 232 32-338 10-265 (273)
62 3as5_A MAMA; tetratricopeptide 99.7 8.8E-16 3E-20 127.3 22.6 132 178-323 46-177 (186)
63 1xnf_A Lipoprotein NLPI; TPR, 99.7 8E-17 2.7E-21 142.9 17.1 228 40-323 17-248 (275)
64 3nf1_A KLC 1, kinesin light ch 99.7 1.5E-16 5.1E-21 143.5 18.4 231 62-322 23-310 (311)
65 3ulq_A Response regulator aspa 99.7 2.6E-16 8.8E-21 147.5 20.3 253 34-322 109-371 (383)
66 3ro2_A PINS homolog, G-protein 99.7 1E-16 3.5E-21 145.4 16.6 263 33-322 48-335 (338)
67 3qky_A Outer membrane assembly 99.7 1.5E-16 5.1E-21 141.1 16.4 188 126-337 21-242 (261)
68 3edt_B KLC 2, kinesin light ch 99.7 4.9E-16 1.7E-20 137.8 19.7 171 131-319 12-198 (283)
69 2fo7_A Synthetic consensus TPR 99.7 9.1E-16 3.1E-20 120.1 18.8 134 175-322 2-135 (136)
70 4a1s_A PINS, partner of inscut 99.7 1.4E-16 4.9E-21 150.0 16.7 262 33-323 91-376 (411)
71 4ga2_A E3 SUMO-protein ligase 99.7 1E-16 3.5E-21 130.2 13.0 133 214-363 2-134 (150)
72 1xnf_A Lipoprotein NLPI; TPR, 99.7 2E-15 6.7E-20 133.8 22.5 171 175-362 44-248 (275)
73 2vgx_A Chaperone SYCD; alterna 99.7 1.2E-16 4E-21 129.6 13.3 116 194-323 7-122 (148)
74 3q15_A PSP28, response regulat 99.7 7.6E-16 2.6E-20 144.2 19.6 193 125-338 106-311 (378)
75 4g1t_A Interferon-induced prot 99.7 3.2E-16 1.1E-20 150.5 17.3 259 41-355 151-456 (472)
76 1ouv_A Conserved hypothetical 99.7 4.1E-15 1.4E-19 132.5 23.2 230 63-361 3-254 (273)
77 3nf1_A KLC 1, kinesin light ch 99.7 2.4E-15 8.1E-20 135.5 20.9 215 126-360 33-309 (311)
78 2ifu_A Gamma-SNAP; membrane fu 99.7 8.8E-16 3E-20 139.8 18.1 185 131-338 47-244 (307)
79 3qou_A Protein YBBN; thioredox 99.7 1.3E-15 4.4E-20 137.4 18.8 153 175-342 118-270 (287)
80 2r5s_A Uncharacterized protein 99.7 5.8E-16 2E-20 129.0 14.1 163 176-355 8-171 (176)
81 2vsy_A XCC0866; transferase, g 99.7 2.4E-15 8.3E-20 148.5 20.9 135 175-323 24-161 (568)
82 1hh8_A P67PHOX, NCF-2, neutrop 99.7 2.5E-15 8.7E-20 128.4 17.8 132 175-323 7-154 (213)
83 2ond_A Cleavage stimulation fa 99.7 2.8E-14 9.5E-19 129.8 25.5 222 45-323 33-274 (308)
84 1qqe_A Vesicular transport pro 99.7 3.9E-15 1.3E-19 134.5 19.2 174 179-361 42-231 (292)
85 3q15_A PSP28, response regulat 99.7 3.3E-15 1.1E-19 139.8 18.7 250 35-320 108-366 (378)
86 2pzi_A Probable serine/threoni 99.7 1.7E-15 5.8E-20 152.8 17.8 157 185-361 402-566 (681)
87 2vsy_A XCC0866; transferase, g 99.7 2.6E-15 8.9E-20 148.3 18.7 161 187-364 2-163 (568)
88 2e2e_A Formate-dependent nitri 99.7 2.3E-15 8E-20 125.1 15.1 126 184-323 20-148 (177)
89 2xcb_A PCRH, regulatory protei 99.7 1.4E-15 4.9E-20 122.0 13.0 115 195-323 5-119 (142)
90 1a17_A Serine/threonine protei 99.6 1.1E-14 3.8E-19 118.8 18.1 133 174-320 13-147 (166)
91 1hz4_A MALT regulatory protein 99.6 1E-13 3.5E-18 129.0 26.6 287 35-354 21-318 (373)
92 3edt_B KLC 2, kinesin light ch 99.6 1E-14 3.5E-19 129.2 18.4 176 126-319 49-281 (283)
93 2yhc_A BAMD, UPF0169 lipoprote 99.6 3.7E-15 1.3E-19 129.3 14.7 173 127-323 11-217 (225)
94 4gcn_A Protein STI-1; structur 99.6 1.6E-14 5.3E-19 113.8 17.0 112 174-293 8-119 (127)
95 3upv_A Heat shock protein STI1 99.6 8.2E-15 2.8E-19 114.7 15.2 114 208-337 3-122 (126)
96 1p5q_A FKBP52, FK506-binding p 99.6 4.7E-16 1.6E-20 143.6 9.2 151 187-342 126-279 (336)
97 2hr2_A Hypothetical protein; a 99.6 4.3E-15 1.5E-19 120.2 13.7 113 210-323 12-135 (159)
98 1p5q_A FKBP52, FK506-binding p 99.6 1.7E-14 6E-19 133.0 18.1 131 175-319 148-294 (336)
99 3urz_A Uncharacterized protein 99.6 1.4E-14 4.7E-19 124.2 15.6 116 208-339 3-134 (208)
100 3gyz_A Chaperone protein IPGC; 99.6 1.9E-14 6.5E-19 116.9 15.5 102 175-290 37-138 (151)
101 4gcn_A Protein STI-1; structur 99.6 2.5E-14 8.6E-19 112.6 15.0 102 209-323 8-116 (127)
102 3upv_A Heat shock protein STI1 99.6 3.3E-14 1.1E-18 111.2 15.5 115 174-302 4-124 (126)
103 3rkv_A Putative peptidylprolyl 99.6 1.1E-14 3.7E-19 119.4 13.2 126 209-339 11-144 (162)
104 3sz7_A HSC70 cochaperone (SGT) 99.6 2.8E-14 9.7E-19 117.1 14.7 104 207-323 9-112 (164)
105 3sz7_A HSC70 cochaperone (SGT) 99.6 2.9E-14 9.9E-19 117.1 14.7 115 174-302 11-125 (164)
106 2vyi_A SGTA protein; chaperone 99.6 8.4E-14 2.9E-18 108.3 16.5 118 175-306 13-130 (131)
107 3rjv_A Putative SEL1 repeat pr 99.6 1.1E-13 3.6E-18 119.0 18.6 162 174-358 18-197 (212)
108 2lni_A Stress-induced-phosphop 99.6 6.2E-14 2.1E-18 109.8 15.1 116 207-338 14-129 (133)
109 2fbn_A 70 kDa peptidylprolyl i 99.6 4.1E-15 1.4E-19 126.2 8.6 157 181-341 11-170 (198)
110 2ond_A Cleavage stimulation fa 99.6 4.1E-13 1.4E-17 122.0 21.8 184 163-364 81-276 (308)
111 2xm6_A Protein corresponding t 99.6 3.4E-12 1.2E-16 123.5 29.4 202 133-359 200-433 (490)
112 1hxi_A PEX5, peroxisome target 99.6 4.4E-14 1.5E-18 110.2 12.6 100 211-323 19-118 (121)
113 2xcb_A PCRH, regulatory protei 99.6 6E-14 2E-18 112.4 13.7 113 175-301 19-131 (142)
114 2lni_A Stress-induced-phosphop 99.6 6.9E-14 2.4E-18 109.5 13.4 117 174-305 16-133 (133)
115 2r5s_A Uncharacterized protein 99.6 3.4E-14 1.1E-18 118.2 12.2 158 126-318 12-172 (176)
116 2vgx_A Chaperone SYCD; alterna 99.6 6.3E-14 2.1E-18 113.4 13.5 105 175-293 22-126 (148)
117 2fbn_A 70 kDa peptidylprolyl i 99.6 1.4E-13 4.9E-18 116.5 16.3 128 175-316 39-183 (198)
118 2ifu_A Gamma-SNAP; membrane fu 99.5 1.4E-13 4.8E-18 125.1 17.3 170 181-361 43-226 (307)
119 2ooe_A Cleavage stimulation fa 99.5 9.8E-12 3.3E-16 121.5 31.6 167 174-358 272-454 (530)
120 2qfc_A PLCR protein; TPR, HTH, 99.5 1.4E-13 4.6E-18 124.3 16.9 139 175-320 116-267 (293)
121 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 4E-15 1.4E-19 143.1 7.2 152 186-342 246-400 (457)
122 2xm6_A Protein corresponding t 99.5 1.7E-12 5.9E-17 125.6 25.4 186 133-338 236-451 (490)
123 3q49_B STIP1 homology and U bo 99.5 2E-13 6.8E-18 107.9 15.5 119 204-336 5-125 (137)
124 1elw_A TPR1-domain of HOP; HOP 99.5 4.1E-13 1.4E-17 102.4 16.6 113 209-337 4-116 (118)
125 3ro3_A PINS homolog, G-protein 99.5 1.8E-13 6.3E-18 110.4 14.9 142 174-322 9-161 (164)
126 1na0_A Designed protein CTPR3; 99.5 6.4E-13 2.2E-17 102.4 17.2 113 209-337 9-121 (125)
127 1a17_A Serine/threonine protei 99.5 6E-13 2.1E-17 108.4 17.8 131 209-355 13-143 (166)
128 2vyi_A SGTA protein; chaperone 99.5 2.9E-13 1E-17 105.2 15.2 117 207-339 10-126 (131)
129 4f3v_A ESX-1 secretion system 99.5 2.9E-13 1E-17 120.2 16.9 213 40-322 18-240 (282)
130 3qou_A Protein YBBN; thioredox 99.5 6.1E-14 2.1E-18 126.4 12.7 131 174-318 151-283 (287)
131 3dra_A Protein farnesyltransfe 99.5 7.6E-13 2.6E-17 119.8 19.9 238 31-323 35-292 (306)
132 1na0_A Designed protein CTPR3; 99.5 9.2E-13 3.1E-17 101.5 17.5 117 174-304 9-125 (125)
133 2fo7_A Synthetic consensus TPR 99.5 1.8E-12 6.1E-17 101.0 19.1 134 210-361 2-135 (136)
134 2qfc_A PLCR protein; TPR, HTH, 99.5 2.6E-12 9E-17 115.7 22.6 157 178-342 79-251 (293)
135 3rkv_A Putative peptidylprolyl 99.5 1.2E-13 4.1E-18 113.1 12.5 119 174-306 11-148 (162)
136 3u3w_A Transcriptional activat 99.5 4.2E-13 1.4E-17 121.0 17.0 170 131-320 86-267 (293)
137 1elw_A TPR1-domain of HOP; HOP 99.5 7.6E-13 2.6E-17 100.9 16.1 112 175-300 5-116 (118)
138 2dba_A Smooth muscle cell asso 99.5 7.1E-13 2.4E-17 105.8 16.5 119 207-338 26-144 (148)
139 2hr2_A Hypothetical protein; a 99.5 7.4E-14 2.5E-18 112.9 10.5 116 174-296 11-142 (159)
140 2c2l_A CHIP, carboxy terminus 99.5 3.1E-14 1.1E-18 127.9 8.6 145 175-338 5-180 (281)
141 1hxi_A PEX5, peroxisome target 99.5 2.2E-13 7.4E-18 106.2 12.1 101 177-291 20-120 (121)
142 3e4b_A ALGK; tetratricopeptide 99.5 1.4E-12 4.8E-17 125.1 20.1 138 175-338 177-329 (452)
143 2kck_A TPR repeat; tetratricop 99.5 2.1E-13 7.3E-18 103.1 11.3 106 204-323 2-110 (112)
144 1wao_1 Serine/threonine protei 99.5 9.8E-15 3.4E-19 141.1 4.5 135 175-323 7-154 (477)
145 2xev_A YBGF; tetratricopeptide 99.5 1.3E-12 4.6E-17 102.0 16.1 103 211-323 4-109 (129)
146 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 4E-13 1.4E-17 129.1 15.5 129 175-317 269-413 (457)
147 3q49_B STIP1 homology and U bo 99.5 6.9E-13 2.3E-17 104.8 14.0 116 174-303 9-129 (137)
148 3dss_A Geranylgeranyl transfer 99.5 1.6E-11 5.5E-16 111.8 24.8 167 177-360 111-306 (331)
149 3gw4_A Uncharacterized protein 99.5 7.7E-13 2.6E-17 111.6 15.0 142 174-322 26-179 (203)
150 3gw4_A Uncharacterized protein 99.5 5.9E-12 2E-16 106.1 20.3 161 185-355 3-173 (203)
151 3u3w_A Transcriptional activat 99.5 2.1E-12 7E-17 116.4 18.2 155 179-341 80-250 (293)
152 1elr_A TPR2A-domain of HOP; HO 99.5 2E-12 6.9E-17 100.5 15.8 122 175-304 5-126 (131)
153 1hh8_A P67PHOX, NCF-2, neutrop 99.5 2.9E-12 1E-16 109.2 17.1 134 210-361 7-153 (213)
154 1ihg_A Cyclophilin 40; ppiase 99.4 1.7E-12 5.9E-17 121.2 16.5 127 210-340 224-354 (370)
155 2if4_A ATFKBP42; FKBP-like, al 99.4 1.1E-13 3.7E-18 127.8 8.0 134 175-342 180-313 (338)
156 3k9i_A BH0479 protein; putativ 99.4 7.7E-13 2.6E-17 102.2 11.6 93 221-323 2-94 (117)
157 2dba_A Smooth muscle cell asso 99.4 3.3E-12 1.1E-16 101.8 15.8 113 175-301 29-144 (148)
158 3mv2_B Coatomer subunit epsilo 99.4 3.4E-12 1.2E-16 114.7 17.4 258 29-362 14-286 (310)
159 2xev_A YBGF; tetratricopeptide 99.4 3.4E-12 1.2E-16 99.6 15.2 118 176-304 4-124 (129)
160 1hz4_A MALT regulatory protein 99.4 2.6E-11 8.8E-16 112.7 23.8 175 174-357 14-202 (373)
161 1elr_A TPR2A-domain of HOP; HO 99.4 2.9E-12 1E-16 99.6 14.7 115 208-339 3-124 (131)
162 3dra_A Protein farnesyltransfe 99.4 3.1E-11 1.1E-15 109.2 23.0 151 175-342 68-235 (306)
163 1ihg_A Cyclophilin 40; ppiase 99.4 1.4E-12 4.6E-17 121.9 12.8 125 174-312 223-363 (370)
164 1dce_A Protein (RAB geranylger 99.4 1.8E-11 6.1E-16 120.5 20.9 149 174-339 63-238 (567)
165 1xi4_A Clathrin heavy chain; a 99.4 3.3E-11 1.1E-15 125.6 23.5 250 34-342 1055-1329(1630)
166 3k9i_A BH0479 protein; putativ 99.4 5.1E-13 1.8E-17 103.2 7.9 107 187-307 3-112 (117)
167 1zu2_A Mitochondrial import re 99.4 1.4E-12 4.7E-17 105.3 9.9 91 220-323 13-124 (158)
168 2if4_A ATFKBP42; FKBP-like, al 99.4 8E-13 2.7E-17 121.9 9.3 122 209-365 179-300 (338)
169 3q7a_A Farnesyltransferase alp 99.4 1.1E-11 3.6E-16 113.6 16.2 151 175-342 89-257 (349)
170 2ooe_A Cleavage stimulation fa 99.4 4.7E-11 1.6E-15 116.6 21.1 220 45-321 255-494 (530)
171 3rjv_A Putative SEL1 repeat pr 99.4 7E-11 2.4E-15 101.3 19.7 141 175-336 51-209 (212)
172 2c2l_A CHIP, carboxy terminus 99.4 5.8E-12 2E-16 113.0 13.0 104 207-323 2-105 (281)
173 3dss_A Geranylgeranyl transfer 99.4 3.3E-10 1.1E-14 103.2 24.5 147 175-338 65-238 (331)
174 1xi4_A Clathrin heavy chain; a 99.4 3.3E-10 1.1E-14 118.2 27.2 243 32-318 989-1249(1630)
175 2e2e_A Formate-dependent nitri 99.3 1.4E-11 4.7E-16 102.1 13.1 127 219-363 20-149 (177)
176 3e4b_A ALGK; tetratricopeptide 99.3 1.3E-10 4.4E-15 111.4 21.7 165 162-354 195-383 (452)
177 1zu2_A Mitochondrial import re 99.3 4.2E-12 1.4E-16 102.4 9.2 93 186-292 14-127 (158)
178 2kck_A TPR repeat; tetratricop 99.3 1.1E-11 3.7E-16 93.6 10.8 103 176-290 8-111 (112)
179 1wao_1 Serine/threonine protei 99.3 1.9E-12 6.3E-17 125.1 6.8 126 211-352 8-133 (477)
180 3ro3_A PINS homolog, G-protein 99.3 1.8E-10 6.1E-15 92.5 17.2 139 209-356 9-156 (164)
181 3n71_A Histone lysine methyltr 99.3 1E-10 3.5E-15 112.7 16.9 138 177-319 312-464 (490)
182 1b89_A Protein (clathrin heavy 99.2 4.1E-12 1.4E-16 119.2 5.7 234 40-341 15-255 (449)
183 4f3v_A ESX-1 secretion system 99.2 7.8E-12 2.7E-16 111.0 6.9 162 181-361 54-240 (282)
184 1dce_A Protein (RAB geranylger 99.2 5.4E-10 1.8E-14 109.9 20.2 136 187-339 41-190 (567)
185 2l6j_A TPR repeat-containing p 99.2 7.3E-12 2.5E-16 94.9 5.1 93 209-314 4-102 (111)
186 3q7a_A Farnesyltransferase alp 99.2 1.6E-09 5.5E-14 99.1 20.3 140 184-340 64-214 (349)
187 4b4t_Q 26S proteasome regulato 99.2 6.3E-10 2.1E-14 105.2 17.7 222 31-285 7-245 (434)
188 1na3_A Designed protein CTPR2; 99.2 3.2E-10 1.1E-14 82.3 12.0 80 256-338 9-88 (91)
189 1na3_A Designed protein CTPR2; 99.2 3.1E-10 1.1E-14 82.4 11.5 85 207-304 7-91 (91)
190 2kat_A Uncharacterized protein 99.2 5E-10 1.7E-14 85.6 12.6 64 258-321 21-84 (115)
191 1b89_A Protein (clathrin heavy 99.1 1.7E-10 5.8E-15 108.2 9.6 164 175-369 149-319 (449)
192 2l6j_A TPR repeat-containing p 99.1 9.4E-10 3.2E-14 83.0 11.7 84 256-339 4-90 (111)
193 1klx_A Cysteine rich protein B 99.1 2.1E-09 7.1E-14 85.5 13.5 112 188-321 9-128 (138)
194 2kat_A Uncharacterized protein 99.1 5.9E-10 2E-14 85.3 9.8 81 273-358 2-82 (115)
195 3ma5_A Tetratricopeptide repea 99.1 3.5E-10 1.2E-14 84.6 8.1 67 256-322 7-73 (100)
196 4b4t_Q 26S proteasome regulato 99.1 7.8E-09 2.7E-13 97.6 18.5 168 179-356 9-202 (434)
197 2kc7_A BFR218_protein; tetratr 99.0 3.4E-10 1.2E-14 84.0 7.0 63 261-323 5-68 (99)
198 3mv2_B Coatomer subunit epsilo 99.0 1.3E-09 4.4E-14 98.0 11.8 165 124-323 104-286 (310)
199 3n71_A Histone lysine methyltr 99.0 8.8E-09 3E-13 99.2 16.8 118 216-338 316-446 (490)
200 2kc7_A BFR218_protein; tetratr 99.0 5.2E-09 1.8E-13 77.4 11.5 78 232-323 16-94 (99)
201 3ma5_A Tetratricopeptide repea 98.9 7.9E-09 2.7E-13 77.0 10.7 70 204-287 3-72 (100)
202 3qww_A SET and MYND domain-con 98.9 1.1E-08 3.8E-13 96.9 13.6 95 220-319 309-411 (433)
203 3qwp_A SET and MYND domain-con 98.9 2.1E-08 7.1E-13 95.1 14.9 120 179-303 292-426 (429)
204 3ly7_A Transcriptional activat 98.8 1.1E-07 3.8E-12 87.0 17.0 138 177-323 199-343 (372)
205 3qww_A SET and MYND domain-con 98.8 2.2E-08 7.4E-13 94.9 12.6 102 185-292 309-423 (433)
206 3qwp_A SET and MYND domain-con 98.8 6.6E-08 2.2E-12 91.7 14.9 114 218-336 296-422 (429)
207 4g26_A Pentatricopeptide repea 98.7 1E-06 3.5E-11 85.2 20.4 162 131-323 37-208 (501)
208 4g26_A Pentatricopeptide repea 98.7 9.9E-07 3.4E-11 85.3 20.0 165 177-357 29-203 (501)
209 2v5f_A Prolyl 4-hydroxylase su 98.7 1.9E-07 6.6E-12 70.0 11.5 84 208-297 4-87 (104)
210 2v5f_A Prolyl 4-hydroxylase su 98.7 2.6E-07 8.8E-12 69.4 11.3 73 259-334 8-87 (104)
211 3bee_A Putative YFRE protein; 98.7 1.3E-07 4.6E-12 69.4 9.4 68 256-323 6-76 (93)
212 3u64_A Protein TP_0956; tetrat 98.6 3.3E-06 1.1E-10 74.3 17.9 109 202-322 146-272 (301)
213 4e6h_A MRNA 3'-END-processing 98.6 9.5E-06 3.3E-10 81.1 23.3 240 46-323 327-574 (679)
214 1pc2_A Mitochondria fission pr 98.6 5.4E-07 1.9E-11 71.7 11.4 87 224-323 13-104 (152)
215 1pc2_A Mitochondria fission pr 98.6 1.3E-06 4.4E-11 69.6 13.4 97 189-297 13-112 (152)
216 1klx_A Cysteine rich protein B 98.5 2.9E-06 1E-10 67.0 14.5 98 180-297 31-136 (138)
217 4e6h_A MRNA 3'-END-processing 98.5 7.4E-06 2.5E-10 81.9 20.2 173 175-362 379-574 (679)
218 3bee_A Putative YFRE protein; 98.4 1.4E-06 4.8E-11 63.8 9.6 72 204-289 2-76 (93)
219 3ffl_A Anaphase-promoting comp 98.2 2.3E-05 7.7E-10 62.8 12.1 121 209-337 20-165 (167)
220 3ly7_A Transcriptional activat 98.1 4.7E-05 1.6E-09 69.7 14.0 141 200-360 186-341 (372)
221 1nzn_A CGI-135 protein, fissio 98.0 0.0002 6.8E-09 54.8 13.3 94 191-296 18-114 (126)
222 3spa_A Mtrpol, DNA-directed RN 97.9 0.00041 1.4E-08 71.0 16.6 134 208-361 126-261 (1134)
223 1nzn_A CGI-135 protein, fissio 97.9 0.0002 6.7E-09 54.9 11.0 89 222-323 14-107 (126)
224 3u64_A Protein TP_0956; tetrat 97.8 6.5E-05 2.2E-09 66.1 9.2 87 189-288 178-272 (301)
225 4h7y_A Dual specificity protei 97.8 0.00082 2.8E-08 52.7 13.2 114 203-323 8-127 (161)
226 3ffl_A Anaphase-promoting comp 97.5 0.00093 3.2E-08 53.5 10.2 119 179-299 25-164 (167)
227 2uy1_A Cleavage stimulation fa 97.5 0.012 4E-07 56.6 19.8 130 190-323 195-353 (493)
228 2uy1_A Cleavage stimulation fa 97.3 0.019 6.4E-07 55.2 18.8 127 174-316 213-380 (493)
229 3txn_A 26S proteasome regulato 97.2 0.067 2.3E-06 49.5 21.2 125 178-308 103-238 (394)
230 3o48_A Mitochondria fission 1 97.2 0.005 1.7E-07 47.3 10.7 68 256-323 40-111 (134)
231 1y8m_A FIS1; mitochondria, unk 97.1 0.006 2.1E-07 47.4 10.9 68 256-323 39-110 (144)
232 3kae_A CDC27, possible protein 97.1 0.03 1E-06 44.7 14.7 106 179-290 38-148 (242)
233 3spa_A Mtrpol, DNA-directed RN 97.1 0.0046 1.6E-07 63.4 12.6 101 174-286 127-231 (1134)
234 3mkq_B Coatomer subunit alpha; 96.9 0.034 1.1E-06 45.1 14.2 102 183-316 14-115 (177)
235 3o48_A Mitochondria fission 1 96.8 0.019 6.4E-07 44.1 10.7 80 207-298 38-120 (134)
236 4b4t_R RPN7, 26S proteasome re 96.6 0.012 4.3E-07 55.3 10.9 104 176-286 133-238 (429)
237 4b4t_P 26S proteasome regulato 96.5 0.047 1.6E-06 51.6 14.3 106 174-285 137-247 (445)
238 1y8m_A FIS1; mitochondria, unk 96.4 0.13 4.4E-06 39.9 13.4 79 207-297 37-118 (144)
239 4h7y_A Dual specificity protei 96.3 0.046 1.6E-06 42.9 10.6 111 179-305 18-142 (161)
240 4gns_B Protein CSD3, chitin bi 96.1 0.079 2.7E-06 53.1 13.8 128 186-316 260-397 (754)
241 2ff4_A Probable regulatory pro 96.1 0.15 5E-06 47.3 14.7 106 186-318 127-233 (388)
242 4gns_B Protein CSD3, chitin bi 95.9 0.11 3.8E-06 52.1 14.0 61 174-235 337-397 (754)
243 1ya0_A SMG-7 transcript varian 95.9 0.041 1.4E-06 52.6 10.5 81 257-340 153-233 (497)
244 3mkq_A Coatomer beta'-subunit; 95.8 0.075 2.6E-06 53.7 12.5 48 183-236 661-708 (814)
245 1qsa_A Protein (soluble lytic 95.7 1.3 4.5E-05 43.4 20.5 124 181-318 221-347 (618)
246 1zbp_A Hypothetical protein VP 95.6 0.29 1E-05 42.3 13.5 119 183-323 6-133 (273)
247 3txn_A 26S proteasome regulato 95.6 0.35 1.2E-05 44.7 14.8 102 213-321 103-212 (394)
248 3mkq_A Coatomer beta'-subunit; 95.2 0.52 1.8E-05 47.5 16.2 103 32-200 603-707 (814)
249 3kae_A CDC27, possible protein 95.2 0.75 2.6E-05 36.8 13.3 116 186-323 14-147 (242)
250 1ya0_A SMG-7 transcript varian 94.8 0.2 7E-06 47.8 11.1 79 211-302 154-232 (497)
251 2ff4_A Probable regulatory pro 94.7 0.22 7.6E-06 46.0 11.0 68 171-239 168-235 (388)
252 1zbp_A Hypothetical protein VP 94.6 0.14 4.8E-06 44.3 8.6 59 265-323 6-64 (273)
253 4b4t_P 26S proteasome regulato 93.9 1.6 5.5E-05 41.0 15.2 103 210-319 138-247 (445)
254 4b4t_R RPN7, 26S proteasome re 93.6 0.51 1.7E-05 44.2 11.0 104 209-322 131-240 (429)
255 4b4t_S RPN3, 26S proteasome re 93.1 1.1 3.9E-05 42.5 12.5 137 174-323 231-377 (523)
256 4fhn_B Nucleoporin NUP120; pro 92.4 3.2 0.00011 44.0 16.2 130 180-316 818-964 (1139)
257 4fhn_B Nucleoporin NUP120; pro 90.2 7.7 0.00026 41.1 16.4 124 174-306 842-987 (1139)
258 4b4t_S RPN3, 26S proteasome re 89.9 1.2 4E-05 42.5 8.8 133 182-323 144-303 (523)
259 3mkq_B Coatomer subunit alpha; 89.4 3.9 0.00013 32.9 10.4 55 207-282 6-60 (177)
260 4ady_A RPN2, 26S proteasome re 88.6 21 0.0007 36.8 17.3 158 182-358 532-696 (963)
261 4b4t_O 26S proteasome regulato 85.1 9.9 0.00034 34.9 12.0 98 182-284 84-197 (393)
262 1qsa_A Protein (soluble lytic 84.0 33 0.0011 33.5 15.8 133 180-315 291-438 (618)
263 4ady_A RPN2, 26S proteasome re 83.9 21 0.00071 36.7 14.4 162 176-354 415-585 (963)
264 4gq2_M Nucleoporin NUP120; bet 79.5 36 0.0012 35.2 14.9 52 180-236 816-867 (950)
265 3t5v_B Nuclear mRNA export pro 77.7 40 0.0014 31.5 13.2 137 175-321 177-329 (455)
266 3ax2_A Mitochondrial import re 75.8 7.9 0.00027 26.1 5.7 32 261-292 22-53 (73)
267 2wpv_A GET4, UPF0363 protein Y 75.2 43 0.0015 29.5 13.0 55 259-316 137-194 (312)
268 3esl_A Checkpoint serine/threo 74.3 26 0.0009 28.7 9.7 89 230-323 58-148 (202)
269 1wy6_A Hypothetical protein ST 72.6 20 0.0007 27.6 7.9 57 265-321 100-156 (172)
270 1wy6_A Hypothetical protein ST 71.4 21 0.00071 27.5 7.7 54 183-237 100-153 (172)
271 3t5x_A PCI domain-containing p 69.2 19 0.00064 29.6 7.9 83 210-308 15-97 (203)
272 3lpz_A GET4 (YOR164C homolog); 67.6 68 0.0023 28.6 14.6 21 259-279 139-159 (336)
273 2crb_A Nuclear receptor bindin 67.1 10 0.00034 26.7 4.7 27 256-282 15-41 (97)
274 2crb_A Nuclear receptor bindin 66.3 14 0.00048 26.0 5.3 29 290-318 15-43 (97)
275 3mkr_B Coatomer subunit alpha; 66.1 70 0.0024 28.2 16.5 22 34-55 22-43 (320)
276 2ijq_A Hypothetical protein; s 63.5 42 0.0014 26.4 8.4 60 260-319 36-104 (161)
277 3t5v_B Nuclear mRNA export pro 63.3 28 0.00096 32.5 8.7 98 189-289 141-254 (455)
278 3mv2_A Coatomer subunit alpha; 62.9 81 0.0028 27.8 13.1 58 287-363 203-261 (325)
279 2wvi_A Mitotic checkpoint seri 59.2 28 0.00096 27.5 6.7 85 229-323 43-129 (164)
280 3ax2_A Mitochondrial import re 58.1 22 0.00075 23.9 5.1 29 295-323 22-50 (73)
281 1om2_A Protein (mitochondrial 56.5 14 0.00048 26.2 4.1 29 260-288 24-52 (95)
282 2ijq_A Hypothetical protein; s 54.2 77 0.0026 24.8 8.5 61 181-241 39-107 (161)
283 1om2_A Protein (mitochondrial 53.0 17 0.00058 25.8 4.0 29 213-241 24-52 (95)
284 3bu8_A Telomeric repeat-bindin 51.9 70 0.0024 26.4 8.0 76 225-305 88-163 (235)
285 2cwy_A Hypothetical protein TT 49.5 65 0.0022 22.6 7.0 61 215-284 7-67 (94)
286 4a5x_A MITD1, MIT domain-conta 49.4 62 0.0021 22.3 7.4 29 257-285 17-45 (86)
287 3t5x_A PCI domain-containing p 49.3 47 0.0016 27.1 6.9 52 256-307 14-70 (203)
288 3mv2_A Coatomer subunit alpha; 49.3 1.4E+02 0.0048 26.4 18.5 29 177-205 210-238 (325)
289 2w2u_A Hypothetical P60 katani 46.2 68 0.0023 21.9 7.5 26 260-285 23-48 (83)
290 2cfu_A SDSA1; SDS-hydrolase, l 43.1 81 0.0028 31.0 8.7 50 257-306 450-499 (658)
291 1wfd_A Hypothetical protein 15 42.7 84 0.0029 21.9 7.4 26 260-285 19-44 (93)
292 4gq2_M Nucleoporin NUP120; bet 41.4 1.3E+02 0.0044 31.1 10.2 66 174-239 840-927 (950)
293 3mkr_B Coatomer subunit alpha; 41.3 1.9E+02 0.0063 25.5 13.4 58 286-362 193-251 (320)
294 1g92_A Poneratoxin, PAC-TX; ne 40.3 8.9 0.00031 19.0 0.6 6 4-9 13-18 (26)
295 3bu8_A Telomeric repeat-bindin 38.8 1.1E+02 0.0036 25.4 7.1 45 179-224 119-163 (235)
296 2v6y_A AAA family ATPase, P60 37.9 94 0.0032 21.1 7.4 24 262-285 17-40 (83)
297 2cpt_A SKD1 protein, vacuolar 37.5 47 0.0016 24.5 4.6 25 261-285 23-47 (117)
298 2w2u_A Hypothetical P60 katani 37.0 59 0.002 22.3 4.7 25 295-319 24-48 (83)
299 2uwj_G Type III export protein 35.2 1.2E+02 0.0042 21.7 8.7 52 179-236 44-95 (115)
300 3dza_A Uncharacterized putativ 34.6 1.8E+02 0.0062 23.4 10.3 62 257-318 109-178 (191)
301 2p58_C Putative type III secre 33.3 1.3E+02 0.0046 21.6 9.2 52 179-236 45-96 (116)
302 3re2_A Predicted protein; meni 32.6 76 0.0026 28.6 5.7 49 228-284 276-324 (472)
303 2rpa_A Katanin P60 ATPase-cont 32.5 43 0.0015 22.7 3.3 25 295-319 17-41 (78)
304 2v6x_A Vacuolar protein sortin 32.4 1.2E+02 0.004 20.6 7.4 26 260-285 17-42 (85)
305 2v6y_A AAA family ATPase, P60 32.2 77 0.0026 21.6 4.7 23 296-318 17-39 (83)
306 2rpa_A Katanin P60 ATPase-cont 32.1 39 0.0013 23.0 3.0 26 213-238 16-41 (78)
307 2dl1_A Spartin; SPG20, MIT, st 31.9 70 0.0024 23.5 4.6 24 260-283 26-49 (116)
308 2npu_A FKBP12-rapamycin comple 31.1 1.6E+02 0.0054 22.0 6.6 53 181-237 47-102 (126)
309 3esl_A Checkpoint serine/threo 30.6 2.2E+02 0.0075 23.2 9.3 51 187-237 92-143 (202)
310 2aff_B MKI67 FHA domain intera 30.6 12 0.00041 22.0 0.2 7 3-9 7-13 (44)
311 2vkj_A TM1634; membrane protei 30.4 1.4E+02 0.0047 20.8 5.6 38 167-204 46-83 (106)
312 4a5x_A MITD1, MIT domain-conta 30.0 88 0.003 21.5 4.7 27 293-319 19-45 (86)
313 3myv_A SUSD superfamily protei 29.7 91 0.0031 28.9 6.3 49 190-238 164-219 (454)
314 2p58_C Putative type III secre 28.8 1E+02 0.0036 22.1 4.8 54 259-317 43-96 (116)
315 2cfu_A SDSA1; SDS-hydrolase, l 28.4 84 0.0029 30.8 6.1 50 175-225 450-499 (658)
316 3myv_A SUSD superfamily protei 28.1 96 0.0033 28.7 6.2 29 256-284 190-218 (454)
317 3mcx_A SUSD superfamily protei 27.9 1.1E+02 0.0038 28.4 6.7 49 190-238 176-231 (477)
318 2d9e_A Peregrin; four-helix bu 27.4 1.5E+02 0.0052 21.7 6.0 49 3-54 24-72 (121)
319 3iqu_A 14-3-3 protein sigma; s 27.0 1.7E+02 0.0059 24.4 6.8 55 226-284 150-204 (236)
320 3kez_A Putative sugar binding 26.6 1E+02 0.0035 28.6 6.1 29 256-284 196-224 (461)
321 2v6x_A Vacuolar protein sortin 26.6 1.1E+02 0.0037 20.8 4.7 25 295-319 18-42 (85)
322 1wfd_A Hypothetical protein 15 26.5 1.1E+02 0.0036 21.4 4.7 23 296-318 21-43 (93)
323 2br9_A 14-3-3E, 14-3-3 protein 25.7 2.9E+02 0.0099 23.0 16.0 54 226-283 147-200 (234)
324 2o8p_A 14-3-3 domain containin 25.4 2.9E+02 0.0099 22.9 8.2 80 223-306 139-224 (227)
325 3kez_A Putative sugar binding 25.2 1.1E+02 0.0037 28.4 6.0 48 191-238 171-225 (461)
326 3lew_A SUSD-like carbohydrate 25.0 1.2E+02 0.0041 28.4 6.3 30 209-238 203-232 (495)
327 3lpz_A GET4 (YOR164C homolog); 24.8 3.6E+02 0.012 23.8 24.8 122 206-338 133-293 (336)
328 3eab_A Spastin; spastin, MIT, 24.5 58 0.002 22.7 2.9 24 260-283 20-46 (89)
329 3bqo_A Telomeric repeat-bindin 24.4 79 0.0027 25.7 4.0 43 179-222 122-164 (211)
330 2cpt_A SKD1 protein, vacuolar 23.9 1.2E+02 0.004 22.3 4.7 23 297-319 25-47 (117)
331 3lew_A SUSD-like carbohydrate 23.3 2.1E+02 0.0073 26.7 7.7 33 288-320 201-233 (495)
332 2wvi_A Mitotic checkpoint seri 23.3 2.7E+02 0.0092 21.7 7.1 47 192-238 78-125 (164)
333 3u84_A Menin; MLL, JUND, ledgf 23.3 1.3E+02 0.0045 27.6 5.6 49 228-284 298-346 (550)
334 4gq4_A Menin; tumor suppressor 23.2 1.4E+02 0.0046 27.5 5.7 73 188-284 259-331 (489)
335 3re2_A Predicted protein; meni 23.2 1.5E+02 0.0052 26.7 5.9 79 213-319 239-325 (472)
336 3ubw_A 14-3-3E, 14-3-3 protein 23.0 3.5E+02 0.012 23.0 15.5 54 225-283 172-226 (261)
337 3k2j_A Protein polybromo-1; PB 22.2 54 0.0019 24.6 2.7 48 4-54 41-88 (130)
338 2br9_A 14-3-3E, 14-3-3 protein 22.1 3.4E+02 0.012 22.6 15.7 46 273-318 147-201 (234)
339 3ph0_C ASCG; type III secretio 22.1 1.6E+02 0.0053 18.6 6.5 43 186-229 18-60 (61)
340 3bqo_A Telomeric repeat-bindin 21.5 1.2E+02 0.004 24.8 4.5 36 259-294 120-155 (211)
341 2uwj_G Type III export protein 21.2 1E+02 0.0034 22.2 3.6 55 259-318 42-96 (115)
342 3mcx_A SUSD superfamily protei 20.8 1.2E+02 0.004 28.3 5.2 30 256-285 202-231 (477)
343 3uzd_A 14-3-3 protein gamma; s 20.5 3.8E+02 0.013 22.5 13.8 55 225-283 147-201 (248)
344 2wpv_A GET4, UPF0363 protein Y 20.1 4.3E+02 0.015 23.0 22.6 27 28-54 13-39 (312)
345 3u84_A Menin; MLL, JUND, ledgf 20.0 1.9E+02 0.0064 26.7 5.9 79 213-319 261-347 (550)
346 2cwy_A Hypothetical protein TT 20.0 2.3E+02 0.0078 19.7 6.2 56 262-319 7-68 (94)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.93 E-value=1.2e-23 Score=197.49 Aligned_cols=217 Identities=12% Similarity=0.052 Sum_probs=152.7
Q ss_pred HHcCcccCCccchHHHHHHHHHHHHHHHHH--------HhhHhhHHhHHHHHHHH------HHHHHHHHHHHHhcCCHHH
Q 017532 127 AVLPIKLSNRQVGLDRFYELLDFVREKLAR--------KLAEKLEESVKSWKKRE------IFVLNCLIGYHLSSKEYNV 192 (370)
Q Consensus 127 a~~~~~~g~~~~al~~l~~ll~~~~~~~~~--------~~~~~~~~~~~~~~~~~------~~~~~~la~~~~~~g~~~~ 192 (370)
+.+....|++++|+..+..++...+..... ...+...++...+.+.+ ..++..+|.++...|++++
T Consensus 142 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~ 221 (388)
T 1w3b_A 142 GNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDR 221 (388)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Confidence 344455677777777776665432211100 01223344455554443 4567778888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCH
Q 017532 193 CFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDY 272 (370)
Q Consensus 193 A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~ 272 (370)
|+..+++++..+| .++.++..+|.++...|++++|+..|++++++.++ + ..++.++|.++...|++
T Consensus 222 A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---------~----~~~~~~l~~~~~~~g~~ 287 (388)
T 1w3b_A 222 AVAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH---------F----PDAYCNLANALKEKGSV 287 (388)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS---------C----HHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHhhCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---------C----HHHHHHHHHHHHHcCCH
Confidence 8888888888888 77788888888888888888888888888764332 1 34577788888888888
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHH
Q 017532 273 VSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLS 352 (370)
Q Consensus 273 ~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll 352 (370)
++|+..|+++++.+|+++.+++++|.++...|++++|++.++++++.+|+. ....++++.+|.. .+..+.....+
T Consensus 288 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~--~g~~~~A~~~~ 362 (388)
T 1w3b_A 288 AEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF---AAAHSNLASVLQQ--QGKLQEALMHY 362 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTC---HHHHHHHHHHHHT--TTCCHHHHHHH
T ss_pred HHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHH--cCCHHHHHHHH
Confidence 888888888888888888888888888888888888888888888888876 6777888888763 34456666666
Q ss_pred HHHhhhCCCC
Q 017532 353 SWIGRVAPDD 362 (370)
Q Consensus 353 ~~~~~~~~d~ 362 (370)
+...+..|+.
T Consensus 363 ~~a~~~~p~~ 372 (388)
T 1w3b_A 363 KEAIRISPTF 372 (388)
T ss_dssp HHHHTTCTTC
T ss_pred HHHHhhCCCC
Confidence 6666655554
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.92 E-value=6.2e-23 Score=192.72 Aligned_cols=288 Identities=14% Similarity=0.036 Sum_probs=216.5
Q ss_pred hHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCC
Q 017532 32 LASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYP 111 (370)
Q Consensus 32 ~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~ 111 (370)
......+.+.|++++|+..+++++.. +|.+...+ ...+.++.+.|++++|...++++..+++..
T Consensus 37 ~~l~~~~~~~~~~~~a~~~~~~a~~~----~p~~~~~~-~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----------- 100 (388)
T 1w3b_A 37 LLLSSIHFQCRRLDRSAHFSTLAIKQ----NPLLAEAY-SNLGNVYKERGQLQEAIEHYRHALRLKPDF----------- 100 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHH-HHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-----------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc----CCCchHHH-HHHHHHHHHCCCHHHHHHHHHHHHHcCcch-----------
Confidence 33445566777777777777776443 46543333 334777888888888888888875543211
Q ss_pred CCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHH------HH--HhhHhhHHhHHHHHHHH------HHHH
Q 017532 112 NRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKL------AR--KLAEKLEESVKSWKKRE------IFVL 177 (370)
Q Consensus 112 ~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~------~~--~~~~~~~~~~~~~~~~~------~~~~ 177 (370)
. ......+.+....|+.++|+..+..++...+... .. ...+..+++.+.+.+.. ..++
T Consensus 101 ------~--~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 172 (388)
T 1w3b_A 101 ------I--DGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAW 172 (388)
T ss_dssp ------H--HHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred ------H--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Confidence 0 0112234444677889999888888765432211 10 11234455666666554 5678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHH
Q 017532 178 NCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNL 257 (370)
Q Consensus 178 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~ 257 (370)
+.+|.++...|++++|+..|+++++.+| .+..++..+|.++...|++++|+..|++++.+.++. ..
T Consensus 173 ~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-------------~~ 238 (388)
T 1w3b_A 173 SNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH-------------AV 238 (388)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC-------------HH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCC-------------HH
Confidence 8899999999999999999999999999 889999999999999999999999999998764432 56
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Q 017532 258 VSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMY 337 (370)
Q Consensus 258 ~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~ly 337 (370)
++.++|.++...|++++|+..|+++++.+|+++.+++++|.++...|++++|++.|+++++.+|++ ...+.+++.+|
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~ 315 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH---ADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc---HHHHHHHHHHH
Confidence 678899999999999999999999999999999999999999999999999999999999999987 77889999998
Q ss_pred HhccCCchhhHHHHHHHHhhhCCCC
Q 017532 338 ELAYVNHSDIKRTLSSWIGRVAPDD 362 (370)
Q Consensus 338 el~~~~~~~~~~~ll~~~~~~~~d~ 362 (370)
.. .+..+....+++......|+.
T Consensus 316 ~~--~g~~~~A~~~~~~al~~~p~~ 338 (388)
T 1w3b_A 316 RE--QGNIEEAVRLYRKALEVFPEF 338 (388)
T ss_dssp HT--TTCHHHHHHHHHHHTTSCTTC
T ss_pred HH--cCCHHHHHHHHHHHHhcCCCc
Confidence 73 445677777777666555553
No 3
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=1.9e-22 Score=192.56 Aligned_cols=320 Identities=12% Similarity=0.066 Sum_probs=232.6
Q ss_pred CCCCCCcccCCCCCCCccccccC-CCCCcCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhh
Q 017532 1 MTESPPVCQNPSRFTDPLTNAFG-SLNDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMK 79 (370)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~ 79 (370)
|++||+.... .+..+..++. +|.++.........+++.|+|++|+..+++++.. +|.+.. .+...+.++..
T Consensus 1 ~~~~~~~~~~---~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----~p~~~~-~~~~l~~~~~~ 72 (450)
T 2y4t_A 1 MHHHHHHSSG---VDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDG----DPDNYI-AYYRRATVFLA 72 (450)
T ss_dssp -------------------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHH-HHHHHHHHHHH
T ss_pred CCcccccccc---ccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCccHH-HHHHHHHHHHH
Confidence 4555543332 2334444442 5566666677888999999999999999998654 476534 44445889999
Q ss_pred hcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHH------H
Q 017532 80 LRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVRE------K 153 (370)
Q Consensus 80 l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~------~ 153 (370)
+|++++|...++++..+++.. + ......+.+....|++++|+..+..++...+. .
T Consensus 73 ~g~~~~A~~~~~~al~~~p~~------------------~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 133 (450)
T 2y4t_A 73 MGKSKAALPDLTKVIQLKMDF------------------T-AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEA 133 (450)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC------------------H-HHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCc------------------H-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHH
Confidence 999999999999986554211 1 11223455557789999999998887642111 0
Q ss_pred ---HH--------------HHhhHhhHHhHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 017532 154 ---LA--------------RKLAEKLEESVKSWKKRE------IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPI 210 (370)
Q Consensus 154 ---~~--------------~~~~~~~~~~~~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 210 (370)
+. ....+...+++..+.... ..+++.+|.++...|++++|+..|+++++.+| .++.
T Consensus 134 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~ 212 (450)
T 2y4t_A 134 QSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTE 212 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHH
Confidence 00 011233445556655544 57888999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH--------HHHHHHhHHHHHHHcCCHHHHHHHHHHH
Q 017532 211 LVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF--------RNLVSRNKALIYLVGKDYVSAVREYEEC 282 (370)
Q Consensus 211 ~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~--------~~~~~~~~g~~~~~~g~~~eA~~~~~~~ 282 (370)
++..+|.++...|++++|+..|++++.+.++. +.. .......+|.+++..|++++|+..|+++
T Consensus 213 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 283 (450)
T 2y4t_A 213 AFYKISTLYYQLGDHELSLSEVRECLKLDQDH---------KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESV 283 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCh---------HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999999999775542 111 0112244599999999999999999999
Q ss_pred HhhCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhh
Q 017532 283 IERDYNDI----VAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRV 358 (370)
Q Consensus 283 l~~~p~~~----~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~ 358 (370)
++.+|+++ .++.++|.++...|++++|+..++++++.+|+. ..++++++.+|... +..+.+...++.....
T Consensus 284 l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~--~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 284 MKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDN---VNALKDRAEAYLIE--EMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHT--TCHHHHHHHHHHHHTT
T ss_pred HhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHh--cCHHHHHHHHHHHHHh
Confidence 99999985 478999999999999999999999999999987 78899999998743 4477778887777777
Q ss_pred CCCC
Q 017532 359 APDD 362 (370)
Q Consensus 359 ~~d~ 362 (370)
.|++
T Consensus 359 ~p~~ 362 (450)
T 2y4t_A 359 NEND 362 (450)
T ss_dssp SSSC
T ss_pred Ccch
Confidence 6665
No 4
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.90 E-value=4.7e-21 Score=176.42 Aligned_cols=293 Identities=12% Similarity=0.064 Sum_probs=227.3
Q ss_pred hHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCC
Q 017532 32 LASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYP 111 (370)
Q Consensus 32 ~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~ 111 (370)
......++..|+|++|+..+++++.. +|.+... +...+.++..+|++++|...++++..+++..
T Consensus 7 ~~~~~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~-~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----------- 70 (359)
T 3ieg_A 7 LELGKKLLAAGQLADALSQFHAAVDG----DPDNYIA-YYRRATVFLAMGKSKAALPDLTKVIALKMDF----------- 70 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHH-HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-----------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh----CcccHHH-HHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-----------
Confidence 34567889999999999999998654 4765444 3445889999999999999999986543211
Q ss_pred CCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHH---HHHHH--------------------HhhHhhHHhHHH
Q 017532 112 NRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVR---EKLAR--------------------KLAEKLEESVKS 168 (370)
Q Consensus 112 ~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~---~~~~~--------------------~~~~~~~~~~~~ 168 (370)
. ......+.+....|+.++|+..+..++...+ ..... ...+...++++.
T Consensus 71 --~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 142 (359)
T 3ieg_A 71 --T------AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITF 142 (359)
T ss_dssp --H------HHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --c------hHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 0 1123345555778999999998887764322 11100 012234455555
Q ss_pred HHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcC
Q 017532 169 WKKRE------IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEG 242 (370)
Q Consensus 169 ~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~ 242 (370)
+.... ..++..+|.++...|++++|+..++++++..| .++.++..+|.++...|++++|+..|++++++.++.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 221 (359)
T 3ieg_A 143 LDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH 221 (359)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc
Confidence 55544 57888999999999999999999999999999 999999999999999999999999999999876552
Q ss_pred CccCCccchHHH--------HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHhCCHHHHH
Q 017532 243 KFEDGLLSEVEF--------RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIV----AINNKALCLMYLRDLSDSI 310 (370)
Q Consensus 243 ~~~~~~~~~p~~--------~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~----~~~nla~~~~~~g~~~~A~ 310 (370)
+.. .......+|.+++..|++++|+..|+++++.+|+++. ++.++|.++...|++++|+
T Consensus 222 ---------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 222 ---------KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ---------hHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 111 0112345699999999999999999999999999884 4678999999999999999
Q ss_pred HHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCCCC
Q 017532 311 KVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDDF 363 (370)
Q Consensus 311 ~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d~~ 363 (370)
..++++++.+|+. ..++++++.+|.. .+..+.+...++...+..|++.
T Consensus 293 ~~~~~~~~~~~~~---~~~~~~~~~~~~~--~g~~~~A~~~~~~a~~~~p~~~ 340 (359)
T 3ieg_A 293 RICSEVLQMEPDN---VNALKDRAEAYLI--EEMYDEAIQDYEAAQEHNENDQ 340 (359)
T ss_dssp HHHHHHHHHCTTC---HHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHHhCccc---HHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCCh
Confidence 9999999999987 7899999999975 4447888888888777777753
No 5
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.90 E-value=2.6e-22 Score=186.74 Aligned_cols=267 Identities=14% Similarity=0.055 Sum_probs=204.6
Q ss_pred CCcCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccc
Q 017532 26 NDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYET 105 (370)
Q Consensus 26 ~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~ 105 (370)
.+..........+.+.|+|++|+..+++++.. +|.+...+ ...+.++.+.|++++|...++++..+++..
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~-~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----- 132 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQ----DPGDAEAW-QFLGITQAENENEQAAIVALQRCLELQPNN----- 132 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CcCCHHHH-HHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-----
Confidence 34445677889999999999999999998654 47654444 445889999999999999999996554211
Q ss_pred cCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHH--HHHHHHHHHHHH
Q 017532 106 YPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKK--REIFVLNCLIGY 183 (370)
Q Consensus 106 ~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~la~~ 183 (370)
+ ......+.+....|++++|+..+..++...+... ..|.. ....++..++.+
T Consensus 133 -------------~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~------------~~~~~~~~~~~~~~~l~~~ 186 (365)
T 4eqf_A 133 -------------L-KALMALAVSYTNTSHQQDACEALKNWIKQNPKYK------------YLVKNKKGSPGLTRRMSKS 186 (365)
T ss_dssp -------------H-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHH------------CC-----------------
T ss_pred -------------H-HHHHHHHHHHHccccHHHHHHHHHHHHHhCccch------------HHHhhhccchHHHHHHHHH
Confidence 1 1122345555788999999999888876444321 11111 123455678999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHh
Q 017532 184 HLSSKEYNVCFDLMNESIGRGNGL--DPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRN 261 (370)
Q Consensus 184 ~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~ 261 (370)
+...|++++|+..|+++++..| . ++.++..+|.++...|++++|+.+|++++++.++. ..++.+
T Consensus 187 ~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-------------~~~~~~ 252 (365)
T 4eqf_A 187 PVDSSVLEGVKELYLEAAHQNG-DMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED-------------YSLWNR 252 (365)
T ss_dssp --CCHHHHHHHHHHHHHHHHSC-SSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-------------HHHHHH
T ss_pred HhhhhhHHHHHHHHHHHHHhCc-CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------------HHHHHH
Confidence 9999999999999999999999 7 89999999999999999999999999999765442 567889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcch---------hHHHHHH
Q 017532 262 KALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVAL---------NETLVVN 332 (370)
Q Consensus 262 ~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~---------~~~~~~n 332 (370)
+|.++...|++++|+..|+++++.+|+++.+++++|.++...|++++|+..|+++++++|+... ...++.+
T Consensus 253 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 332 (365)
T 4eqf_A 253 LGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAA 332 (365)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999987321 3567888
Q ss_pred HHHHHHhccC
Q 017532 333 LCSMYELAYV 342 (370)
Q Consensus 333 l~~lyel~~~ 342 (370)
++.++.....
T Consensus 333 l~~~~~~~g~ 342 (365)
T 4eqf_A 333 LRIALSLMDQ 342 (365)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHcCc
Confidence 9988875443
No 6
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.90 E-value=1.7e-21 Score=176.59 Aligned_cols=261 Identities=13% Similarity=0.154 Sum_probs=196.8
Q ss_pred hHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCC
Q 017532 34 SLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNR 113 (370)
Q Consensus 34 ~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~ 113 (370)
.++.++-.|+|..|++.+++.. ..+|.+......+.+.+++.+|++++|+.+++.. +++
T Consensus 5 ~~~~~~~~g~y~~ai~~~~~~~----~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~~-------------- 63 (291)
T 3mkr_A 5 DVKNAFYIGSYQQCINEAQRVK----PSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAP-------------- 63 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSC----CCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SCH--------------
T ss_pred HHHHHHHHHHHHHHHHHHHhcc----cCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CCh--------------
Confidence 5788999999999999887743 3457654433334477999999999999988652 110
Q ss_pred CCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHH--HHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHH
Q 017532 114 TGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFV--REKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYN 191 (370)
Q Consensus 114 ~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 191 (370)
....++ ..+......|+.++|++.+.+++..- +.. ..+++.+|.++...|+++
T Consensus 64 ----~~~a~~-~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~--------------------~~~~~~la~~~~~~g~~~ 118 (291)
T 3mkr_A 64 ----ELQAVR-MFAEYLASHSRRDAIVAELDREMSRSVDVTN--------------------TTFLLMAASIYFYDQNPD 118 (291)
T ss_dssp ----HHHHHH-HHHHHHHCSTTHHHHHHHHHHHHHSCCCCSC--------------------HHHHHHHHHHHHHTTCHH
T ss_pred ----hHHHHH-HHHHHHcCCCcHHHHHHHHHHHHhcccCCCC--------------------HHHHHHHHHHHHHCCCHH
Confidence 111222 23444467788888888877765321 100 145678899999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHH--HHHHHc
Q 017532 192 VCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKA--LIYLVG 269 (370)
Q Consensus 192 ~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g--~~~~~~ 269 (370)
+|+..+++ | .+..++..+|.++.++|++++|++.|++++++.++. .......| .++...
T Consensus 119 ~Al~~l~~-----~-~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~-------------~~~~l~~a~~~l~~~~ 179 (291)
T 3mkr_A 119 AALRTLHQ-----G-DSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDA-------------TLTQLATAWVSLAAGG 179 (291)
T ss_dssp HHHHHHTT-----C-CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------HHHHHHHHHHHHHHCT
T ss_pred HHHHHHhC-----C-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCc-------------HHHHHHHHHHHHHhCc
Confidence 99999988 6 888999999999999999999999999999764431 11111122 333456
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHH
Q 017532 270 KDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKR 349 (370)
Q Consensus 270 g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~ 349 (370)
|++++|+..|+++++.+|+++.+++++|.++...|++++|++.|+++++.+|++ ..+++|++.++..... ..+...
T Consensus 180 ~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~---~~~l~~l~~~~~~~g~-~~eaa~ 255 (291)
T 3mkr_A 180 EKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH---PETLINLVVLSQHLGK-PPEVTN 255 (291)
T ss_dssp THHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTC-CHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCC-CHHHHH
Confidence 899999999999999999999999999999999999999999999999999998 8889999988875433 334556
Q ss_pred HHHHHHhhhCCCCC
Q 017532 350 TLSSWIGRVAPDDF 363 (370)
Q Consensus 350 ~ll~~~~~~~~d~~ 363 (370)
.+++++....|++.
T Consensus 256 ~~~~~~~~~~P~~~ 269 (291)
T 3mkr_A 256 RYLSQLKDAHRSHP 269 (291)
T ss_dssp HHHHHHHHHCTTCH
T ss_pred HHHHHHHHhCCCCh
Confidence 77777777777763
No 7
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.90 E-value=3.2e-22 Score=182.46 Aligned_cols=284 Identities=11% Similarity=0.082 Sum_probs=216.9
Q ss_pred CCCCcCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcc
Q 017532 24 SLNDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQY 103 (370)
Q Consensus 24 ~~~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~ 103 (370)
.+.+++........++..|+|++|++.+++++.. +|.+.. .+...+.++..+|++++|...+.++...++..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~----~p~~~~-~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--- 89 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEK----DPFHAS-CLPVHIGTLVELNKANELFYLSHKLVDLYPSN--- 89 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCTT-THHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS---
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCChh-hHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC---
Confidence 3466666777888999999999999999997654 465433 33334778899999999999999986543211
Q ss_pred cccCCCCCCCCCcccchhHHHHHHHcCcccC-CccchHHHHHHHHHHHHHH------HH--HHhhHhhHHhHHHHHHHH-
Q 017532 104 ETYPHIYPNRTGSMVPFSLRWLYAVLPIKLS-NRQVGLDRFYELLDFVREK------LA--RKLAEKLEESVKSWKKRE- 173 (370)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g-~~~~al~~l~~ll~~~~~~------~~--~~~~~~~~~~~~~~~~~~- 173 (370)
+ ......+.+....| ++++|+..+..++...+.. +. ....+...++...+....
T Consensus 90 ---------------~-~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 153 (330)
T 3hym_B 90 ---------------P-VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQ 153 (330)
T ss_dssp ---------------T-HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ---------------H-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 0 11222344456778 8888998888776432211 00 012233445555555544
Q ss_pred -----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCc
Q 017532 174 -----IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGL 248 (370)
Q Consensus 174 -----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~ 248 (370)
..++..+|.++...|++++|+..++++++..| .++.++..+|.++...|++++|+.+|++++++.+.. +.
T Consensus 154 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~ 228 (330)
T 3hym_B 154 LMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAI----GN 228 (330)
T ss_dssp HTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTT----SC
T ss_pred hccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhc----cc
Confidence 35677899999999999999999999999999 899999999999999999999999999999876552 21
Q ss_pred cch-HHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhH
Q 017532 249 LSE-VEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNE 327 (370)
Q Consensus 249 ~~~-p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~ 327 (370)
... |.. ..++.++|.++...|++++|+..|+++++.+|+++.++.++|.++...|++++|++.|+++++.+|++ .
T Consensus 229 ~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~ 304 (330)
T 3hym_B 229 EVTVDKW-EPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDD---T 304 (330)
T ss_dssp SCTTTTC-CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCC---H
T ss_pred cccccHH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCc---h
Confidence 111 333 56788999999999999999999999999999999999999999999999999999999999999987 7
Q ss_pred HHHHHHHHHHHhc
Q 017532 328 TLVVNLCSMYELA 340 (370)
Q Consensus 328 ~~~~nl~~lyel~ 340 (370)
.....++.+++..
T Consensus 305 ~~~~~l~~~~~~~ 317 (330)
T 3hym_B 305 FSVTMLGHCIEMY 317 (330)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH
Confidence 8888999888643
No 8
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.90 E-value=1.5e-21 Score=178.03 Aligned_cols=253 Identities=9% Similarity=0.082 Sum_probs=180.9
Q ss_pred CCCCcCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhc-CHHHHHHHhhhcCCCCCCCCc
Q 017532 24 SLNDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLR-RFDEAQQELDSLEDFNSSGYQ 102 (370)
Q Consensus 24 ~~~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~-~~~~A~~~~~~~~~l~~~~~~ 102 (370)
.|.+.......+..+...|++++|+..+.+++.. +|.+...++. .+.++...| ++++|...++++..+++...
T Consensus 52 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~-l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~- 125 (330)
T 3hym_B 52 DPFHASCLPVHIGTLVELNKANELFYLSHKLVDL----YPSNPVSWFA-VGCYYLMVGHKNEHARRYLSKATTLEKTYG- 125 (330)
T ss_dssp CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTSTHHHHH-HHHHHHHSCSCHHHHHHHHHHHHTTCTTCT-
T ss_pred CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh----CcCCHHHHHH-HHHHHHHhhhhHHHHHHHHHHHHHhCCccH-
Confidence 4455555556778889999999999999998654 4665444444 478899999 99999999999976653111
Q ss_pred ccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHH------HH--HHhhHhhHHhHHHHHHHH-
Q 017532 103 YETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREK------LA--RKLAEKLEESVKSWKKRE- 173 (370)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~------~~--~~~~~~~~~~~~~~~~~~- 173 (370)
......+.+....|++++|+..+..++...+.. +. ....+...++.+.+....
T Consensus 126 ------------------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 187 (330)
T 3hym_B 126 ------------------PAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALS 187 (330)
T ss_dssp ------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ------------------HHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 112234555577899999999998877553321 00 012334455666666655
Q ss_pred -----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccC
Q 017532 174 -----IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDP--ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFED 246 (370)
Q Consensus 174 -----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~ 246 (370)
..+++.+|.++...|++++|+..+++++...+ ... ........++...|..-.....+++|+.......
T Consensus 188 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~--- 263 (330)
T 3hym_B 188 IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIK-AIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQAL--- 263 (330)
T ss_dssp TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT-TTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHH---
T ss_pred hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhh-hccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---
Confidence 67889999999999999999999999998764 111 0001124567777777777777788876654311
Q ss_pred CccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHhCCHH
Q 017532 247 GLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCL-MYLRDLS 307 (370)
Q Consensus 247 ~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~-~~~g~~~ 307 (370)
..+|+. ..++..+|.++...|++++|+++|+++++++|+++.++..++.++ ...|+.+
T Consensus 264 --~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 264 --VLIPQN-ASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp --HHSTTC-SHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred --hhCccc-hHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 123333 567889999999999999999999999999999999999999998 4666654
No 9
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.89 E-value=6.6e-22 Score=195.79 Aligned_cols=277 Identities=13% Similarity=0.078 Sum_probs=213.3
Q ss_pred cCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccC
Q 017532 28 LVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYP 107 (370)
Q Consensus 28 ~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~ 107 (370)
+......+..+++.|++++|+..++++... +|.+...+ ...+.++.+.|++++|...++.+....+.+
T Consensus 305 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------- 372 (597)
T 2xpi_A 305 SDLLLCKADTLFVRSRFIDVLAITTKILEI----DPYNLDVY-PLHLASLHESGEKNKLYLISNDLVDRHPEK------- 372 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCCTTH-HHHHHHHHHHTCHHHHHHHHHHHHHHCTTS-------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHc----CcccHHHH-HHHHHHHHHhCCHHHHHHHHHHHHhhCccc-------
Confidence 333444667778888888888888887643 25432333 334677788888888888887774322110
Q ss_pred CCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHH--------HHhhHhhHHhHHHHHHHH------
Q 017532 108 HIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLA--------RKLAEKLEESVKSWKKRE------ 173 (370)
Q Consensus 108 ~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~--------~~~~~~~~~~~~~~~~~~------ 173 (370)
+.. ....+.++...|+.++|+..+..++...+.... ....+..+++.+.+.+..
T Consensus 373 -----------~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 440 (597)
T 2xpi_A 373 -----------AVT-WLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT 440 (597)
T ss_dssp -----------HHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTC
T ss_pred -----------HHH-HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 111 122344457789999999999887653221110 012344556666766654
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
..+++.++.++...|++++|+..|+++++..| .++.++..+|.++.+.|++++|++.|++++++.++. ..+|+
T Consensus 441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~p~ 513 (597)
T 2xpi_A 441 HLPYLFLGMQHMQLGNILLANEYLQSSYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT------QSNEK 513 (597)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS------CCCSG
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc------ccchh
Confidence 46788999999999999999999999999999 899999999999999999999999999999876542 12333
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHH
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNL 333 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl 333 (370)
....++..+|.++...|++++|++.|+++++.+|+++.++.++|.++...|++++|++.|+++++.+|++ .....++
T Consensus 514 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l 590 (597)
T 2xpi_A 514 PWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNE---IMASDLL 590 (597)
T ss_dssp GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC---hHHHHHH
Confidence 1146788899999999999999999999999999999999999999999999999999999999999998 8888999
Q ss_pred HHHHH
Q 017532 334 CSMYE 338 (370)
Q Consensus 334 ~~lye 338 (370)
+.+|+
T Consensus 591 ~~~~~ 595 (597)
T 2xpi_A 591 KRALE 595 (597)
T ss_dssp HHTTC
T ss_pred HHHHh
Confidence 98875
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=1.2e-20 Score=180.15 Aligned_cols=282 Identities=10% Similarity=0.081 Sum_probs=217.3
Q ss_pred CCCCcCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcc
Q 017532 24 SLNDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQY 103 (370)
Q Consensus 24 ~~~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~ 103 (370)
.|.+..........+...|++++|+..+.+++.. +|.+... +...+.++.++|++++|...++++..+++....
T Consensus 56 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~- 129 (450)
T 2y4t_A 56 DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL----KMDFTAA-RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENE- 129 (450)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHH-
T ss_pred CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCCcHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh-
Confidence 3444444555677889999999999999998654 4765333 444588999999999999999999766532110
Q ss_pred cccCCCCCCCCCcccch-hH--------HHHHHHcCcccCCccchHHHHHHHHHHHHHHHH------H--HhhHhhHHhH
Q 017532 104 ETYPHIYPNRTGSMVPF-SL--------RWLYAVLPIKLSNRQVGLDRFYELLDFVREKLA------R--KLAEKLEESV 166 (370)
Q Consensus 104 ~~~~~~~~~~~~~~~~~-~~--------r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~------~--~~~~~~~~~~ 166 (370)
....+ .+ ....+.+....|++++|+..+..++...+.... . ...+...++.
T Consensus 130 ------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 197 (450)
T 2y4t_A 130 ------------EKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAI 197 (450)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGH
T ss_pred ------------hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHH
Confidence 00000 00 111234456789999999999887654322111 0 1223445566
Q ss_pred HHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH------------HHHHHHcCCHHHH
Q 017532 167 KSWKKRE------IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKL------------GFIQMQVGDLEGA 228 (370)
Q Consensus 167 ~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~l------------g~~~~~~g~~~~A 228 (370)
..+.... ..+++.+|.++...|++++|+..+++++...| .+...+..+ |.++...|++++|
T Consensus 198 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 276 (450)
T 2y4t_A 198 SDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDA 276 (450)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 6665544 57889999999999999999999999999999 888777665 9999999999999
Q ss_pred HHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHH
Q 017532 229 KKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSD 308 (370)
Q Consensus 229 ~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~ 308 (370)
+.+|++++++.+. ++......+..+|.++...|++++|+..|+++++.+|+++.++.++|.++...|++++
T Consensus 277 ~~~~~~~l~~~p~---------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 347 (450)
T 2y4t_A 277 TSKYESVMKTEPS---------IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDE 347 (450)
T ss_dssp HHHHHHHHHHCCS---------SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhcCCc---------chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHH
Confidence 9999999986543 4444356788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 017532 309 SIKVLENALERVPTVALNETLVVNLCSM 336 (370)
Q Consensus 309 A~~~l~~al~~~p~~~~~~~~~~nl~~l 336 (370)
|+..|+++++.+|++ ..+...++.+
T Consensus 348 A~~~~~~al~~~p~~---~~~~~~l~~~ 372 (450)
T 2y4t_A 348 AIQDYETAQEHNEND---QQIREGLEKA 372 (450)
T ss_dssp HHHHHHHHHTTSSSC---HHHHHHHHHH
T ss_pred HHHHHHHHHHhCcch---HHHHHHHHHH
Confidence 999999999999997 6777777743
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=1.8e-20 Score=172.44 Aligned_cols=291 Identities=10% Similarity=0.066 Sum_probs=219.9
Q ss_pred CCCCcCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCC---CC
Q 017532 24 SLNDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNS---SG 100 (370)
Q Consensus 24 ~~~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~---~~ 100 (370)
.|.+..........+...|+|++|+..+++++.. +|.+... +...+.++...|++++|...++++..+++ ..
T Consensus 33 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 107 (359)
T 3ieg_A 33 DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL----KMDFTAA-RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEE 107 (359)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHH-HHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHH
T ss_pred CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCcchH-HHHHHHHHHHcCChHHHHHHHHHHHhcCCcccCh
Confidence 3444445556778889999999999999998654 4765433 44458899999999999999999976543 11
Q ss_pred CcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHH--------HhhHhhHHhHHHHHHH
Q 017532 101 YQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLAR--------KLAEKLEESVKSWKKR 172 (370)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~--------~~~~~~~~~~~~~~~~ 172 (370)
...... -+...........+.+....|+.++|+..+..++...+..... ...+...++...+...
T Consensus 108 ~~~~~~-------l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 180 (359)
T 3ieg_A 108 KEAESQ-------LVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAA 180 (359)
T ss_dssp HHHHHH-------HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHH-------HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 000000 0000000001112455678899999999998877543221110 1233445566666665
Q ss_pred H------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHH
Q 017532 173 E------IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVS------------KLGFIQMQVGDLEGAKKSFNR 234 (370)
Q Consensus 173 ~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~------------~lg~~~~~~g~~~~A~~~~~~ 234 (370)
. ..+++.+|.++...|++++|+..++++++..| .+...+. .+|.++...|++++|+..|++
T Consensus 181 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 259 (359)
T 3ieg_A 181 SKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYES 259 (359)
T ss_dssp HTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4 67889999999999999999999999999999 8776553 448889999999999999999
Q ss_pred HHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 017532 235 VEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLE 314 (370)
Q Consensus 235 a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~ 314 (370)
+++..++ ++......+..+|.++...|++++|+..|+++++.+|+++.++.++|.++...|++++|++.|+
T Consensus 260 ~~~~~~~---------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 330 (359)
T 3ieg_A 260 VMKTEPS---------VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYE 330 (359)
T ss_dssp HHHHCCS---------SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhcCCC---------chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9986544 3433356678899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCcchhHHHHHHHHHHHHh
Q 017532 315 NALERVPTVALNETLVVNLCSMYEL 339 (370)
Q Consensus 315 ~al~~~p~~~~~~~~~~nl~~lyel 339 (370)
++++.+|++ ..+...+..++..
T Consensus 331 ~a~~~~p~~---~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 331 AAQEHNEND---QQIREGLEKAQRL 352 (359)
T ss_dssp HHHTTCTTC---HHHHHHHHHHHHH
T ss_pred HHHhcCCCC---hHHHHHHHHHHHH
Confidence 999999998 7777788777654
No 12
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.88 E-value=1.4e-20 Score=186.16 Aligned_cols=282 Identities=12% Similarity=0.048 Sum_probs=222.8
Q ss_pred HHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCc
Q 017532 37 DLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGS 116 (370)
Q Consensus 37 ~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 116 (370)
.+.+.|++++|++.++++... |.+... +...+.++.+.|++++|...++++...++.+.
T Consensus 281 ~~~~~g~~~~A~~~~~~~~~~-----~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------- 339 (597)
T 2xpi_A 281 KTSHEDELRRAEDYLSSINGL-----EKSSDL-LLCKADTLFVRSRFIDVLAITTKILEIDPYNL--------------- 339 (597)
T ss_dssp TTTTHHHHHHHHHHHHTSTTG-----GGCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCC---------------
T ss_pred HHcCcchHHHHHHHHHHhhcC-----CchHHH-HHHHHHHHHHhcCHHHHHHHHHHHHHcCcccH---------------
Confidence 345789999999999987543 443333 44458899999999999999999864432110
Q ss_pred ccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHH--------HHhhHhhHHhHHHHHHHH------HHHHHHHHH
Q 017532 117 MVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLA--------RKLAEKLEESVKSWKKRE------IFVLNCLIG 182 (370)
Q Consensus 117 ~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~--------~~~~~~~~~~~~~~~~~~------~~~~~~la~ 182 (370)
.. + ...+.+....|+.++|+..+..++...+.... ....+..+++.+.+.+.. ..+++.++.
T Consensus 340 -~~--~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 415 (597)
T 2xpi_A 340 -DV--Y-PLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAH 415 (597)
T ss_dssp -TT--H-HHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred -HH--H-HHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 11 1 12233346789999999999887644221110 012334556666666654 568889999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhH
Q 017532 183 YHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNK 262 (370)
Q Consensus 183 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~ 262 (370)
++...|++++|+..|+++++..| .+..++..+|.++.+.|++++|+++|++++++.+. + ..++..+
T Consensus 416 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---------~----~~~~~~l 481 (597)
T 2xpi_A 416 SFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY---------D----PLLLNEL 481 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC---------C----HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------C----hHHHHHH
Confidence 99999999999999999999999 89999999999999999999999999999976443 2 4568889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhh------CCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Q 017532 263 ALIYLVGKDYVSAVREYEECIER------DYND-IVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCS 335 (370)
Q Consensus 263 g~~~~~~g~~~eA~~~~~~~l~~------~p~~-~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~ 335 (370)
|.++...|++++|++.|+++++. +|++ ..+++++|.++...|++++|++.++++++.+|++ ..++++++.
T Consensus 482 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~ 558 (597)
T 2xpi_A 482 GVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTND---ANVHTAIAL 558 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCC---HHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---hHHHHHHHH
Confidence 99999999999999999999998 6665 7899999999999999999999999999999987 788999999
Q ss_pred HHHhccCCchhhHHHHHHHHhhhCCCC
Q 017532 336 MYELAYVNHSDIKRTLSSWIGRVAPDD 362 (370)
Q Consensus 336 lyel~~~~~~~~~~~ll~~~~~~~~d~ 362 (370)
+|.. .+..+....+++++....|++
T Consensus 559 ~~~~--~g~~~~A~~~~~~~l~~~p~~ 583 (597)
T 2xpi_A 559 VYLH--KKIPGLAITHLHESLAISPNE 583 (597)
T ss_dssp HHHH--TTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHH--hCCHHHHHHHHHHHHhcCCCC
Confidence 9975 445788888888887777775
No 13
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.88 E-value=1.9e-21 Score=177.14 Aligned_cols=277 Identities=12% Similarity=0.057 Sum_probs=209.7
Q ss_pred CCcCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccc
Q 017532 26 NDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYET 105 (370)
Q Consensus 26 ~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~ 105 (370)
.+..........+...|+|++|+..+++++.. +|.+...+ ...+.++...|++++|...++++..+++..
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----- 88 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQA----APEREEAW-RSLGLTQAENEKDGLAIIALNHARMLDPKD----- 88 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHh----CCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCcCC-----
Confidence 34455677888999999999999999998654 47654444 345888999999999999999986553211
Q ss_pred cCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHH-----HHHHHHHH
Q 017532 106 YPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKR-----EIFVLNCL 180 (370)
Q Consensus 106 ~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l 180 (370)
+ ......+.+....|++++|+..+..++...+... ..|... .......+
T Consensus 89 -------------~-~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~ 142 (327)
T 3cv0_A 89 -------------I-AVHAALAVSHTNEHNANAALASLRAWLLSQPQYE------------QLGSVNLQADVDIDDLNVQ 142 (327)
T ss_dssp -------------H-HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTT------------TC-----------------
T ss_pred -------------H-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccH------------HHHHHHhHHHHHHHHHHHH
Confidence 0 1122345555778999999988887764322111 000000 00111133
Q ss_pred -HH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHH
Q 017532 181 -IG-YHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLV 258 (370)
Q Consensus 181 -a~-~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~ 258 (370)
+. ++...|++++|+..++++++..| .+..++..+|.++...|++++|+.+|++++++.+.. ..+
T Consensus 143 ~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-------------~~~ 208 (327)
T 3cv0_A 143 SEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD-------------AQL 208 (327)
T ss_dssp ---CCTTSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------HHH
T ss_pred HHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc-------------HHH
Confidence 33 47788999999999999999999 899999999999999999999999999999764432 456
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc---------chhHHH
Q 017532 259 SRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV---------ALNETL 329 (370)
Q Consensus 259 ~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~---------~~~~~~ 329 (370)
+..+|.++...|++++|+..|+++++.+|+++.++.++|.++...|++++|++.++++++..|+. .....+
T Consensus 209 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 288 (327)
T 3cv0_A 209 WNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSM 288 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999982 113778
Q ss_pred HHHHHHHHHhccCCchhhHHHHHHH
Q 017532 330 VVNLCSMYELAYVNHSDIKRTLSSW 354 (370)
Q Consensus 330 ~~nl~~lyel~~~~~~~~~~~ll~~ 354 (370)
+.+++.+|....+ .+....+.+.
T Consensus 289 ~~~l~~~~~~~g~--~~~A~~~~~~ 311 (327)
T 3cv0_A 289 WDFFRMLLNVMNR--PDLVELTYAQ 311 (327)
T ss_dssp HHHHHHHHHHTTC--HHHHHHHTTC
T ss_pred HHHHHHHHHhcCC--HHHHHHHHHH
Confidence 8999999875433 5555555543
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=4.7e-20 Score=179.85 Aligned_cols=285 Identities=12% Similarity=0.072 Sum_probs=209.9
Q ss_pred hHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCC
Q 017532 32 LASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYP 111 (370)
Q Consensus 32 ~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~ 111 (370)
......+++.|+|++|+..+++++.. +|.+... +...+.++.++|++++|...++++..+++...
T Consensus 29 ~~~g~~~~~~g~~~~A~~~~~~al~~----~p~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---------- 93 (537)
T 3fp2_A 29 KNRGNHFFTAKNFNEAIKYYQYAIEL----DPNEPVF-YSNISACYISTGDLEKVIEFTTKALEIKPDHS---------- 93 (537)
T ss_dssp HHHHHHHHHTTCCC-CHHHHHHHHHH----CTTCHHH-HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----------
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhh----CCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchH----------
Confidence 33566788888888888888887554 4665433 34457888888888888888888865542110
Q ss_pred CCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHH------------------------HH--------------
Q 017532 112 NRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVR------------------------EK-------------- 153 (370)
Q Consensus 112 ~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~------------------------~~-------------- 153 (370)
......+.+....|+.++|+..+..+ ...+ ..
T Consensus 94 ---------~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~ 163 (537)
T 3fp2_A 94 ---------KALLRRASANESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPS 163 (537)
T ss_dssp ---------HHHHHHHHHHHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCC
T ss_pred ---------HHHHHHHHHHHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccch
Confidence 11222344446667777777666321 0000 00
Q ss_pred ------------------------------------HHH----------HhhHhhHHhHHHHHHHH-------------H
Q 017532 154 ------------------------------------LAR----------KLAEKLEESVKSWKKRE-------------I 174 (370)
Q Consensus 154 ------------------------------------~~~----------~~~~~~~~~~~~~~~~~-------------~ 174 (370)
+.. ...+...+++..+...+ +
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~ 243 (537)
T 3fp2_A 164 NTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAA 243 (537)
T ss_dssp HHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHH
T ss_pred HhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHH
Confidence 000 00012223333333322 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
.++..+|.++...|++++|+..+++++...| . ..++..+|.++...|++++|+.+|++++++.+..
T Consensus 244 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~-~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------------ 309 (537)
T 3fp2_A 244 LALCYTGIFHFLKNNLLDAQVLLQESINLHP-T-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEY------------ 309 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-C-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTC------------
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCC-C-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCC------------
Confidence 5688999999999999999999999999999 7 8899999999999999999999999999764442
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHH
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLC 334 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~ 334 (370)
..++..+|.++...|++++|+..|++++..+|+++.++.++|.++...|++++|++.++++++.+|+. ..++++++
T Consensus 310 -~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~ 385 (537)
T 3fp2_A 310 -PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL---PEVPTFFA 385 (537)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---THHHHHHH
T ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hHHHHHHH
Confidence 55688899999999999999999999999999999999999999999999999999999999999987 77889999
Q ss_pred HHHHhccCCchhhHHHHHHHHhhhCCC
Q 017532 335 SMYELAYVNHSDIKRTLSSWIGRVAPD 361 (370)
Q Consensus 335 ~lyel~~~~~~~~~~~ll~~~~~~~~d 361 (370)
.+|... +..+.....++......|+
T Consensus 386 ~~~~~~--g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 386 EILTDR--GDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHT--TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHh--CCHHHHHHHHHHHHHcCCc
Confidence 998743 4467777777665544443
No 15
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.87 E-value=1.1e-20 Score=175.47 Aligned_cols=279 Identities=14% Similarity=0.061 Sum_probs=208.4
Q ss_pred cCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccC
Q 017532 28 LVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYP 107 (370)
Q Consensus 28 ~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~ 107 (370)
..........++..|+|++|+..+.+++.. +|.+...+ ...+.++...|++++|...++++..+++..
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~-~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------- 131 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ----DPKHMEAW-QYLGTTQAENEQELLAISALRRCLELKPDN------- 131 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHS----CTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHH-HHHHHHHHHCcCHHHHHHHHHHHHhcCCCC-------
Confidence 344567888999999999999999998654 47654444 445889999999999999999986554211
Q ss_pred CCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhc
Q 017532 108 HIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSS 187 (370)
Q Consensus 108 ~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 187 (370)
+ ......+.+....|++++|+..+..++...+........ .... .. ..........++.++ ..
T Consensus 132 -----------~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~~~~-~~-~~~~~~~~~~~~~~~-~~ 194 (368)
T 1fch_A 132 -----------Q-TALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTP--AEEG-AG-GAGLGPSKRILGSLL-SD 194 (368)
T ss_dssp -----------H-HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-------------------CTTHHHH-HH
T ss_pred -----------H-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH--HHHH-hh-hhcccHHHHHHHHHh-hc
Confidence 1 112234555577899999999888876543221100000 0000 00 000011222455555 88
Q ss_pred CCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHH
Q 017532 188 KEYNVCFDLMNESIGRGNGL--DPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALI 265 (370)
Q Consensus 188 g~~~~A~~~~~~~l~~~~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~ 265 (370)
|++++|+..++++++..| . ++.++..+|.++...|++++|+.+|++++++.++. ..++.++|.+
T Consensus 195 ~~~~~A~~~~~~a~~~~p-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------------~~~~~~l~~~ 260 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDP-TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND-------------YLLWNKLGAT 260 (368)
T ss_dssp HHHHHHHHHHHHHHHHST-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------HHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCc-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-------------HHHHHHHHHH
Confidence 999999999999999999 7 78999999999999999999999999999764432 5578889999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcc--------hhHHHHHHHHHHH
Q 017532 266 YLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVA--------LNETLVVNLCSMY 337 (370)
Q Consensus 266 ~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~--------~~~~~~~nl~~ly 337 (370)
+...|++++|+..|+++++.+|+++.+++++|.++...|++++|+..|+++++..|+.. ....++.+++.+|
T Consensus 261 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 340 (368)
T 1fch_A 261 LANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLAL 340 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988651 1257888999999
Q ss_pred HhccCCchhhHHHH
Q 017532 338 ELAYVNHSDIKRTL 351 (370)
Q Consensus 338 el~~~~~~~~~~~l 351 (370)
....+ .+....+
T Consensus 341 ~~~g~--~~~A~~~ 352 (368)
T 1fch_A 341 SMLGQ--SDAYGAA 352 (368)
T ss_dssp HHHTC--GGGHHHH
T ss_pred HHhCC--hHhHHHh
Confidence 86554 3444433
No 16
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.86 E-value=5.1e-20 Score=154.41 Aligned_cols=169 Identities=10% Similarity=0.008 Sum_probs=151.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
+.+++++|.++..+|+|++|+..|+++++.+| .++.++..+|.++...|++++|+..++++....+..
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~----------- 72 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS----------- 72 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC-----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh-----------
Confidence 36788999999999999999999999999999 999999999999999999999999999999764442
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHH
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNL 333 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl 333 (370)
..++...|.++...+++++|+..+++++..+|.+..++..+|.++...|++++|++.|+++++.+|++ ..+++++
T Consensus 73 --~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l 147 (184)
T 3vtx_A 73 --AEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF---IRAYQSI 147 (184)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHH
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchh---hhHHHHH
Confidence 55678899999999999999999999999999999999999999999999999999999999999998 8899999
Q ss_pred HHHHHhccCCchhhHHHHHHHHhhhCCC
Q 017532 334 CSMYELAYVNHSDIKRTLSSWIGRVAPD 361 (370)
Q Consensus 334 ~~lyel~~~~~~~~~~~ll~~~~~~~~d 361 (370)
+.+|... +..+++....++.-+..|+
T Consensus 148 g~~~~~~--g~~~~A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 148 GLAYEGK--GLRDEAVKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHC--CCHHHHHHHHHHHHhCCcc
Confidence 9999854 4467777777766555554
No 17
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.86 E-value=1.2e-20 Score=163.26 Aligned_cols=187 Identities=16% Similarity=0.077 Sum_probs=154.8
Q ss_pred HHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 017532 127 AVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNG 206 (370)
Q Consensus 127 a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 206 (370)
+.+....|++++|+..+..++...+.. ..+++.+|.++...|++++|+..|+++++.+|
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~p~~--------------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P- 70 (217)
T 2pl2_A 12 GVQLYALGRYDAALTLFERALKENPQD--------------------PEALYWLARTQLKLGLVNPALENGKTLVARTP- 70 (217)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTSSSC--------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC--------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-
Confidence 444467788888888777765332211 25667899999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHH
Q 017532 207 LDPILVSKLGFIQMQV-----------GDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSA 275 (370)
Q Consensus 207 ~~~~~~~~lg~~~~~~-----------g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA 275 (370)
+++.++..+|.++... |++++|+..|++++++.|+. ..++.++|.++...|++++|
T Consensus 71 ~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~-------------~~~~~~lg~~~~~~g~~~~A 137 (217)
T 2pl2_A 71 RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY-------------APLHLQRGLVYALLGERDKA 137 (217)
T ss_dssp TCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC-------------HHHHHHHHHHHHHTTCHHHH
T ss_pred CcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc-------------HHHHHHHHHHHHHcCChHHH
Confidence 9999999999999999 99999999999999765542 56788999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHH
Q 017532 276 VREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSS 353 (370)
Q Consensus 276 ~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~ 353 (370)
+..|+++++++ +++.+++++|.++...|++++|+..|+++++.+|++ ..+.++++.++... +..++....++
T Consensus 138 ~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~~~~~--g~~~~A~~~~~ 209 (217)
T 2pl2_A 138 EASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKD---LDLRVRYASALLLK--GKAEEAARAAA 209 (217)
T ss_dssp HHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHc--cCHHHHHHHHH
Confidence 99999999999 999999999999999999999999999999999998 88899999998643 33444444443
No 18
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.86 E-value=1e-19 Score=157.49 Aligned_cols=169 Identities=13% Similarity=0.013 Sum_probs=152.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
.+++.+|.++...|++++|+..|+++++.+| .++.++..+|.++.+.|++++|+..|++++++.|+.
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~------------ 72 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVARTPRY------------ 72 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------------
Confidence 4567899999999999999999999999999 999999999999999999999999999999765542
Q ss_pred HHHHHHhHHHHHHHc-----------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 255 RNLVSRNKALIYLVG-----------KDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~-----------g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
..++.++|.++... |++++|+..|+++++++|+++.+++++|.++...|++++|++.|+++++++ ++
T Consensus 73 -~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~ 150 (217)
T 2pl2_A 73 -LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DT 150 (217)
T ss_dssp -HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CC
T ss_pred -HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cc
Confidence 66788999999999 999999999999999999999999999999999999999999999999999 66
Q ss_pred chhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCCCC
Q 017532 324 ALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDDF 363 (370)
Q Consensus 324 ~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d~~ 363 (370)
..++++++.+|... +..+.....++......|++.
T Consensus 151 ---~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~P~~~ 185 (217)
T 2pl2_A 151 ---PEIRSALAELYLSM--GRLDEALAQYAKALEQAPKDL 185 (217)
T ss_dssp ---HHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHSTTCH
T ss_pred ---hHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCh
Confidence 78899999999754 446777777777777777653
No 19
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.85 E-value=3.1e-20 Score=187.40 Aligned_cols=162 Identities=15% Similarity=0.038 Sum_probs=147.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
+.+++++|.++..+|++++|+..|+++++.+| ++..+++++|.++.++|++++|+.+|++++++.++
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~------------ 75 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT------------ 75 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------
Confidence 46788999999999999999999999999999 99999999999999999999999999999976554
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHH
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNL 333 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl 333 (370)
. ..++.++|.++..+|++++|++.|+++++++|+++.+++|+|.++...|++++|++.|+++++++|++ ..+++||
T Consensus 76 ~-~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~---~~a~~~L 151 (723)
T 4gyw_A 76 F-ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF---PDAYCNL 151 (723)
T ss_dssp C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC---HHHHHHH
T ss_pred C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hHHHhhh
Confidence 2 67899999999999999999999999999999999999999999999999999999999999999998 8899999
Q ss_pred HHHHHhccCCchhhHHHHHHH
Q 017532 334 CSMYELAYVNHSDIKRTLSSW 354 (370)
Q Consensus 334 ~~lyel~~~~~~~~~~~ll~~ 354 (370)
+.+|....+ .+...+..++
T Consensus 152 ~~~l~~~g~--~~~A~~~~~k 170 (723)
T 4gyw_A 152 AHCLQIVCD--WTDYDERMKK 170 (723)
T ss_dssp HHHHHHTTC--CTTHHHHHHH
T ss_pred hhHHHhccc--HHHHHHHHHH
Confidence 999986544 3334433333
No 20
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.3e-19 Score=175.33 Aligned_cols=169 Identities=10% Similarity=0.039 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
..+++.+|.++...|++++|+..++++++..| . ..++..+|.++...|++++|+..|++++.+.+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~-~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------------ 302 (514)
T 2gw1_A 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELFP-R-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN------------ 302 (514)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCC-C-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT------------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc-c-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC------------
Confidence 46778899999999999999999999999999 6 889999999999999999999999999854333
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHH
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNL 333 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl 333 (370)
. ..++..+|.++...|++++|+..|+++++.+|.+..++.++|.++...|++++|+..++++++.+|+. ...++++
T Consensus 303 ~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l 378 (514)
T 2gw1_A 303 N-SSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEA---PEVPNFF 378 (514)
T ss_dssp C-THHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTC---SHHHHHH
T ss_pred C-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccC---HHHHHHH
Confidence 2 55678899999999999999999999999999999999999999999999999999999999999987 6788899
Q ss_pred HHHHHhccCCchhhHHHHHHHHhhhCCCC
Q 017532 334 CSMYELAYVNHSDIKRTLSSWIGRVAPDD 362 (370)
Q Consensus 334 ~~lyel~~~~~~~~~~~ll~~~~~~~~d~ 362 (370)
+.+|... +..+....+++......|++
T Consensus 379 a~~~~~~--~~~~~A~~~~~~a~~~~~~~ 405 (514)
T 2gw1_A 379 AEILTDK--NDFDKALKQYDLAIELENKL 405 (514)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHC--CCHHHHHHHHHHHHHhhhcc
Confidence 9888743 34667777766665544443
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.85 E-value=2.9e-20 Score=172.47 Aligned_cols=266 Identities=10% Similarity=0.003 Sum_probs=196.6
Q ss_pred HHHcCChHHHHH-HHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCc
Q 017532 38 LATRGSWRTIID-NVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGS 116 (370)
Q Consensus 38 l~~~g~~~~Ai~-~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 116 (370)
..-.|+|++|+. .+.+++... ..+|......+...+.++.+.|++++|...++++...++..
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---------------- 97 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFE-EENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH---------------- 97 (368)
T ss_dssp -----------CHHHHCCCCCC-SSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC----------------
T ss_pred hHHHHHHHHHHhhhhhHHHhcC-CCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----------------
Confidence 345689999998 888765432 12232112223445888999999999999999997654311
Q ss_pred ccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 017532 117 MVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDL 196 (370)
Q Consensus 117 ~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 196 (370)
+ ......+.+....|++++|+..+..++...+.. ..++..+|.++...|++++|+..
T Consensus 98 --~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------------------~~~~~~l~~~~~~~g~~~~A~~~ 154 (368)
T 1fch_A 98 --M-EAWQYLGTTQAENEQELLAISALRRCLELKPDN--------------------QTALMALAVSFTNESLQRQACEI 154 (368)
T ss_dssp --H-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------------------HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --H-HHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCC--------------------HHHHHHHHHHHHHcCCHHHHHHH
Confidence 0 112234555677899999998888776432211 24567899999999999999999
Q ss_pred HHHHHhCCCCCCHHHHH----------------HHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHH
Q 017532 197 MNESIGRGNGLDPILVS----------------KLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSR 260 (370)
Q Consensus 197 ~~~~l~~~~~~~~~~~~----------------~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~ 260 (370)
+++++...| .+...+. .+|.++ ..|++++|+.+|++++++.+.. .+ ..++.
T Consensus 155 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~-------~~----~~~~~ 221 (368)
T 1fch_A 155 LRDWLRYTP-AYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTS-------ID----PDVQC 221 (368)
T ss_dssp HHHHHHTST-TTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTS-------CC----HHHHH
T ss_pred HHHHHHhCc-CcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCc-------cc----HHHHH
Confidence 999999999 6655543 467766 8999999999999999875541 11 56688
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhc
Q 017532 261 NKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELA 340 (370)
Q Consensus 261 ~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~ 340 (370)
++|.++...|++++|+..|++++..+|+++.+++++|.++...|++++|+..|+++++.+|+. ..++++++.+|...
T Consensus 222 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~l~~~~~~~ 298 (368)
T 1fch_A 222 GLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY---IRSRYNLGISCINL 298 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHC
Confidence 899999999999999999999999999999999999999999999999999999999999987 78899999999754
Q ss_pred cCCchhhHHHHHHHHhhhCCC
Q 017532 341 YVNHSDIKRTLSSWIGRVAPD 361 (370)
Q Consensus 341 ~~~~~~~~~~ll~~~~~~~~d 361 (370)
. ..+.....++......|+
T Consensus 299 g--~~~~A~~~~~~al~~~~~ 317 (368)
T 1fch_A 299 G--AHREAVEHFLEALNMQRK 317 (368)
T ss_dssp T--CHHHHHHHHHHHHHHHHT
T ss_pred C--CHHHHHHHHHHHHHhCCC
Confidence 3 366777777666554444
No 22
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.85 E-value=4.5e-20 Score=173.27 Aligned_cols=246 Identities=9% Similarity=-0.008 Sum_probs=197.5
Q ss_pred ChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcC-HHHHHHHhhhcCCCCCCCCcccccCCC
Q 017532 31 DLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRR-FDEAQQELDSLEDFNSSGYQYETYPHI 109 (370)
Q Consensus 31 ~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~-~~~A~~~~~~~~~l~~~~~~~~~~~~~ 109 (370)
.......+.+.|++++|+..+++++.. +|.+ ...|..++.++..+|+ +++|+..++++..+++-..
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l----~P~~-~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~-------- 166 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIEL----NAAN-YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY-------- 166 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHH----CTTC-HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH--------
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHh----CccC-HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCH--------
Confidence 344566778899999999999998654 6875 4455567999999997 9999999999977664221
Q ss_pred CCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 017532 110 YPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKE 189 (370)
Q Consensus 110 ~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 189 (370)
..|. ..+.+....|++.+|+..+..++...+.. ..+++.+|.++...|+
T Consensus 167 --------~a~~---~~g~~~~~~g~~~eAl~~~~kal~ldP~~--------------------~~a~~~lg~~~~~~g~ 215 (382)
T 2h6f_A 167 --------QVWH---HRRVLVEWLRDPSQELEFIADILNQDAKN--------------------YHAWQHRQWVIQEFKL 215 (382)
T ss_dssp --------HHHH---HHHHHHHHHTCCTTHHHHHHHHHHHCTTC--------------------HHHHHHHHHHHHHHTC
T ss_pred --------HHHH---HHHHHHHHccCHHHHHHHHHHHHHhCccC--------------------HHHHHHHHHHHHHcCC
Confidence 1111 12333466799999998888776433321 2456789999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHH
Q 017532 190 YNVCFDLMNESIGRGNGLDPILVSKLGFIQMQ-VGDLEGA-----KKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKA 263 (370)
Q Consensus 190 ~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~-~g~~~~A-----~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g 263 (370)
+++|+..|+++++.+| .+..+|+.+|.++.. .|.+++| +.+|++++++.+++ ..+|.++|
T Consensus 216 ~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~-------------~~a~~~l~ 281 (382)
T 2h6f_A 216 WDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHN-------------ESAWNYLK 281 (382)
T ss_dssp CTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTC-------------HHHHHHHH
T ss_pred hHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCC-------------HHHHHHHH
Confidence 9999999999999999 999999999999999 5665788 59999999765543 66889999
Q ss_pred HHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC---------CHHHHHHHHHHH-HHhCCCcchhHHHHH
Q 017532 264 LIYLVGK--DYVSAVREYEECIERDYNDIVAINNKALCLMYLR---------DLSDSIKVLENA-LERVPTVALNETLVV 331 (370)
Q Consensus 264 ~~~~~~g--~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g---------~~~~A~~~l~~a-l~~~p~~~~~~~~~~ 331 (370)
.++...| ++++|++.++++ +.+|+++.++..+|.++...| .+++|+++|+++ ++.+|.. ...+.
T Consensus 282 ~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r---~~~w~ 357 (382)
T 2h6f_A 282 GILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIR---KEYWR 357 (382)
T ss_dssp HHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGG---HHHHH
T ss_pred HHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchh---HHHHH
Confidence 9999988 799999999998 999999999999999999985 369999999999 9999986 56666
Q ss_pred HHHHHHH
Q 017532 332 NLCSMYE 338 (370)
Q Consensus 332 nl~~lye 338 (370)
+++..+.
T Consensus 358 ~~~~~l~ 364 (382)
T 2h6f_A 358 YIGRSLQ 364 (382)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665554
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.84 E-value=2.6e-20 Score=173.18 Aligned_cols=236 Identities=10% Similarity=0.026 Sum_probs=183.0
Q ss_pred HHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHH
Q 017532 70 LAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDF 149 (370)
Q Consensus 70 ~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~ 149 (370)
+...+..+.+.|++++|...++++...++.. + ......+.+....|++++|+..+..++..
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~------------------~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 128 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGD------------------A-EAWQFLGITQAENENEQAAIVALQRCLEL 128 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------------------H-HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCC------------------H-HHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3445889999999999999999996554211 1 11223455557789999999888877643
Q ss_pred HHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH----------HHHHHHH
Q 017532 150 VREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILV----------SKLGFIQ 219 (370)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~----------~~lg~~~ 219 (370)
.+.. ..+++.+|.++...|++++|+..|+++++..| .+...+ ..+|.++
T Consensus 129 ~p~~--------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~l~~~~ 187 (365)
T 4eqf_A 129 QPNN--------------------LKALMALAVSYTNTSHQQDACEALKNWIKQNP-KYKYLVKNKKGSPGLTRRMSKSP 187 (365)
T ss_dssp CTTC--------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCH-HHHCC------------------
T ss_pred CCCC--------------------HHHHHHHHHHHHccccHHHHHHHHHHHHHhCc-cchHHHhhhccchHHHHHHHHHH
Confidence 2211 24567899999999999999999999999988 544333 4459999
Q ss_pred HHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 017532 220 MQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALC 299 (370)
Q Consensus 220 ~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~ 299 (370)
...|++++|+.+|++++++.+.. .+ ..++.++|.++...|++++|+..|+++++.+|+++.+++++|.+
T Consensus 188 ~~~g~~~~A~~~~~~al~~~p~~-------~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 256 (365)
T 4eqf_A 188 VDSSVLEGVKELYLEAAHQNGDM-------ID----PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGAT 256 (365)
T ss_dssp -CCHHHHHHHHHHHHHHHHSCSS-------CC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHhCcCc-------cC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999999875541 12 45678899999999999999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCC
Q 017532 300 LMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPD 361 (370)
Q Consensus 300 ~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d 361 (370)
+...|++++|++.|+++++.+|+. ..++++++.+|....+ .+.....++......|+
T Consensus 257 ~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~~~ 313 (365)
T 4eqf_A 257 LANGDRSEEAVEAYTRALEIQPGF---IRSRYNLGISCINLGA--YREAVSNFLTALSLQRK 313 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTC--CHHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCc---hHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCcc
Confidence 999999999999999999999998 8899999999975433 56666666666554444
No 24
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.84 E-value=1.1e-19 Score=159.65 Aligned_cols=228 Identities=14% Similarity=0.066 Sum_probs=180.8
Q ss_pred HhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCC
Q 017532 33 ASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPN 112 (370)
Q Consensus 33 ~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~ 112 (370)
.....++..|+|++|+..+.+++... .++ ..+...+.++..+|++++|...+.++..+.+... ++
T Consensus 10 ~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~----~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------~~ 74 (258)
T 3uq3_A 10 AEGNKFYKARQFDEAIEHYNKAWELH--KDI----TYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR---------AD 74 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS--CCT----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---------CC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhh--ccH----HHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc---------cc
Confidence 35667889999999999999987654 222 2344458899999999999999999865432100 00
Q ss_pred CCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHH
Q 017532 113 RTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNV 192 (370)
Q Consensus 113 ~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 192 (370)
...-.......+.+....|++++|+..+...+...+. +.++...|++++
T Consensus 75 ---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----------------------------~~~~~~~~~~~~ 123 (258)
T 3uq3_A 75 ---YKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT----------------------------ADILTKLRNAEK 123 (258)
T ss_dssp ---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC----------------------------HHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch----------------------------hHHHHHHhHHHH
Confidence 0000112223455557788888888887776542211 234556688999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCH
Q 017532 193 CFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDY 272 (370)
Q Consensus 193 A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~ 272 (370)
|+..+++++..+| .+..++..+|.++...|++++|+.+|++++.+.+.. ..++..+|.++...|++
T Consensus 124 a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-------------~~~~~~l~~~~~~~~~~ 189 (258)
T 3uq3_A 124 ELKKAEAEAYVNP-EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED-------------ARGYSNRAAALAKLMSF 189 (258)
T ss_dssp HHHHHHHHHHCCH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHcCc-chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc-------------HHHHHHHHHHHHHhCCH
Confidence 9999999999999 889999999999999999999999999999764442 45688899999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 017532 273 VSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERV 320 (370)
Q Consensus 273 ~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~ 320 (370)
++|+..|+++++.+|+++.++.++|.++...|++++|+..++++++.+
T Consensus 190 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 190 PEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999998
No 25
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.84 E-value=3.4e-20 Score=174.05 Aligned_cols=243 Identities=11% Similarity=0.026 Sum_probs=191.1
Q ss_pred cCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCC-ccc
Q 017532 60 LTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSN-RQV 138 (370)
Q Consensus 60 ~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~-~~~ 138 (370)
..+|.+. ..+.+++.++.+.|++++|+..++++..+++... ..| ...+.+....|+ .++
T Consensus 91 ~~~p~~~-~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~----------------~a~---~~~g~~l~~~g~d~~e 150 (382)
T 2h6f_A 91 IYSDKFR-DVYDYFRAVLQRDERSERAFKLTRDAIELNAANY----------------TVW---HFRRVLLKSLQKDLHE 150 (382)
T ss_dssp CCCHHHH-HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCH----------------HHH---HHHHHHHHHTTCCHHH
T ss_pred hCChhhH-HHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCH----------------HHH---HHHHHHHHHcccCHHH
Confidence 4567653 3445567889999999999999999977664221 111 122334456786 888
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 017532 139 GLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFI 218 (370)
Q Consensus 139 al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~ 218 (370)
|+..+..++...+.. ..+++++|.++...|++++|+..|+++++.+| .+..+|+.+|.+
T Consensus 151 Al~~~~~al~l~P~~--------------------~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~ 209 (382)
T 2h6f_A 151 EMNYITAIIEEQPKN--------------------YQVWHHRRVLVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWV 209 (382)
T ss_dssp HHHHHHHHHHHCTTC--------------------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCC--------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHH
Confidence 888777766433321 24667899999999999999999999999999 999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHH-cCCHHHH-----HHHHHHHHhhCCCCHHH
Q 017532 219 QMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLV-GKDYVSA-----VREYEECIERDYNDIVA 292 (370)
Q Consensus 219 ~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~-~g~~~eA-----~~~~~~~l~~~p~~~~~ 292 (370)
+..+|++++|+.+|++++++.+++ ..+|.++|.++.. .|.+++| +.+|+++++++|++..+
T Consensus 210 ~~~~g~~~eAl~~~~~al~l~P~~-------------~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a 276 (382)
T 2h6f_A 210 IQEFKLWDNELQYVDQLLKEDVRN-------------NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESA 276 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTC-------------HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHcCChHHHHHHHHHHHHhCCCC-------------HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHH
Confidence 999999999999999999765543 6789999999999 6665888 59999999999999999
Q ss_pred HHHHHHHHHHhC--CHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCC-------chhhHHHHHHHH-hhhCC
Q 017532 293 INNKALCLMYLR--DLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVN-------HSDIKRTLSSWI-GRVAP 360 (370)
Q Consensus 293 ~~nla~~~~~~g--~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~-------~~~~~~~ll~~~-~~~~~ 360 (370)
|+++|.++...| ++++|++.++++ +.+|+. ..++..++.+|....+. ..++...+++.+ .+..|
T Consensus 277 ~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~---~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP 350 (382)
T 2h6f_A 277 WNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSS---PYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDT 350 (382)
T ss_dssp HHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCC---HHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHccCccchHHHHHHHHHh-ccCCCC---HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCc
Confidence 999999999988 699999999998 888887 78889999988754211 125566666665 34444
No 26
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.84 E-value=1e-18 Score=170.39 Aligned_cols=319 Identities=13% Similarity=0.045 Sum_probs=215.2
Q ss_pred CCCCcCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCC--CC
Q 017532 24 SLNDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSS--GY 101 (370)
Q Consensus 24 ~~~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~--~~ 101 (370)
.|.+..........+.+.|+|++|+..+.+++.. +|.+...+ ...+.++..+|++++|...++.+ .+++. ..
T Consensus 55 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~-~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~ 128 (537)
T 3fp2_A 55 DPNEPVFYSNISACYISTGDLEKVIEFTTKALEI----KPDHSKAL-LRRASANESLGNFTDAMFDLSVL-SLNGDFDGA 128 (537)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHH-HHHHHHHHHHTCHHHHHHHHHHH-C--------
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCchHHHH-HHHHHHHHHcCCHHHHHHHHHHH-hcCCCCChH
Confidence 4556555666778889999999999999998654 57754444 44588999999999999999744 22221 10
Q ss_pred cccc----------------cCCCCCCCCC-----------------------------cccch---hHHHHHHHcCccc
Q 017532 102 QYET----------------YPHIYPNRTG-----------------------------SMVPF---SLRWLYAVLPIKL 133 (370)
Q Consensus 102 ~~~~----------------~~~~~~~~~~-----------------------------~~~~~---~~r~l~a~~~~~~ 133 (370)
.... .....++... ...+. ..+.+........
T Consensus 129 ~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 208 (537)
T 3fp2_A 129 SIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATD 208 (537)
T ss_dssp ---CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhh
Confidence 0000 0000000000 00000 1111111101111
Q ss_pred C-------CccchHHHHHHHHHHHHHH----------H---HH--HhhHhhHHhHHHHHHHH-----HHHHHHHHHHHHh
Q 017532 134 S-------NRQVGLDRFYELLDFVREK----------L---AR--KLAEKLEESVKSWKKRE-----IFVLNCLIGYHLS 186 (370)
Q Consensus 134 g-------~~~~al~~l~~ll~~~~~~----------~---~~--~~~~~~~~~~~~~~~~~-----~~~~~~la~~~~~ 186 (370)
+ ++.+|+..+..++...+.. . .. ...+...++...+.... ..+++.+|.++..
T Consensus 209 ~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 288 (537)
T 3fp2_A 209 EGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLAD 288 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 2 3344444444333221110 0 00 01122344555555443 4678899999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHH
Q 017532 187 SKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIY 266 (370)
Q Consensus 187 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~ 266 (370)
.|++++|+..+++++...| .++.++..+|.++...|++++|+..|++++++.+.. ..++..+|.++
T Consensus 289 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------------~~~~~~la~~~ 354 (537)
T 3fp2_A 289 KENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN-------------VYPYIQLACLL 354 (537)
T ss_dssp SSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------SHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-------------HHHHHHHHHHH
Confidence 9999999999999999999 999999999999999999999999999999765442 45678899999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcc---hhHHHHHHHHHHHHhccC-
Q 017532 267 LVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVA---LNETLVVNLCSMYELAYV- 342 (370)
Q Consensus 267 ~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~---~~~~~~~nl~~lyel~~~- 342 (370)
...|++++|+..|+++++.+|+++.+++++|.++...|++++|++.|+++++.+|+.. .....+++++.+|.....
T Consensus 355 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 434 (537)
T 3fp2_A 355 YKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQ 434 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999987642 223445677777764311
Q ss_pred -------CchhhHHHHHHHHhhhCCCC
Q 017532 343 -------NHSDIKRTLSSWIGRVAPDD 362 (370)
Q Consensus 343 -------~~~~~~~~ll~~~~~~~~d~ 362 (370)
+..+.....++......|++
T Consensus 435 ~~~~~~~~~~~~A~~~~~~a~~~~p~~ 461 (537)
T 3fp2_A 435 DPTQLDEEKFNAAIKLLTKACELDPRS 461 (537)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHCTTC
T ss_pred cchhhhHhHHHHHHHHHHHHHHhCCCC
Confidence 34567777777766666654
No 27
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.83 E-value=8.4e-19 Score=169.70 Aligned_cols=314 Identities=11% Similarity=0.039 Sum_probs=219.8
Q ss_pred CChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCccc-----
Q 017532 30 PDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYE----- 104 (370)
Q Consensus 30 ~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~----- 104 (370)
........+++.|+|++|+..+.+++.. +|.+... +...+.++.++|++++|...++++..+++......
T Consensus 41 ~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 115 (514)
T 2gw1_A 41 FYSNLSACYVSVGDLKKVVEMSTKALEL----KPDYSKV-LLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLE 115 (514)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH----CSCCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHH
T ss_pred HHHhHHHHHHHHhhHHHHHHHHHHHhcc----ChHHHHH-HHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHH
Confidence 3445667888899999999999887654 4765433 34458889999999999999988866554221000
Q ss_pred --------------------------------------ccCCC------------CCCCCC-----cccchhHHHHHHHc
Q 017532 105 --------------------------------------TYPHI------------YPNRTG-----SMVPFSLRWLYAVL 129 (370)
Q Consensus 105 --------------------------------------~~~~~------------~~~~~~-----~~~~~~~r~l~a~~ 129 (370)
..+.. +..... ...........+..
T Consensus 116 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (514)
T 2gw1_A 116 RNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLS 195 (514)
T ss_dssp HHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHH
Confidence 00000 000000 00000111112221
Q ss_pred C---cccCCccchHHHHHHHHHHH--------------HHHHHH--------HhhHhhHHhHHHHHHHH-----HHHHHH
Q 017532 130 P---IKLSNRQVGLDRFYELLDFV--------------REKLAR--------KLAEKLEESVKSWKKRE-----IFVLNC 179 (370)
Q Consensus 130 ~---~~~g~~~~al~~l~~ll~~~--------------~~~~~~--------~~~~~~~~~~~~~~~~~-----~~~~~~ 179 (370)
. ...|++++|+..+..++... +..... ...+...++...+.... ..++..
T Consensus 196 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 275 (514)
T 2gw1_A 196 NLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIY 275 (514)
T ss_dssp HHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHH
Confidence 1 24799999999998887632 111100 01223344555554433 567889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHH
Q 017532 180 LIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVS 259 (370)
Q Consensus 180 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~ 259 (370)
+|.++...|++++|+..+++++...| .+..++..+|.++...|++++|+..|++++++.+.. ..++
T Consensus 276 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------------~~~~ 341 (514)
T 2gw1_A 276 MALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPEN-------------IFPY 341 (514)
T ss_dssp HHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSC-------------SHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhh-------------HHHH
Confidence 99999999999999999999999999 888999999999999999999999999999754432 4567
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcch---hHHHHHHHHHH
Q 017532 260 RNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVAL---NETLVVNLCSM 336 (370)
Q Consensus 260 ~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~---~~~~~~nl~~l 336 (370)
..+|.++...|++++|+..|+++++.+|+++.+++++|.++...|++++|+..++++++..|+... ....+++++.+
T Consensus 342 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 421 (514)
T 2gw1_A 342 IQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATL 421 (514)
T ss_dssp HHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999999999999999999998887511 01278888888
Q ss_pred HHhcc-CCchhhHHHHHHHHhhhCCCC
Q 017532 337 YELAY-VNHSDIKRTLSSWIGRVAPDD 362 (370)
Q Consensus 337 yel~~-~~~~~~~~~ll~~~~~~~~d~ 362 (370)
|.... .+..+.....++......|++
T Consensus 422 ~~~~~~~~~~~~A~~~~~~a~~~~~~~ 448 (514)
T 2gw1_A 422 LTRNPTVENFIEATNLLEKASKLDPRS 448 (514)
T ss_dssp HHTSCCTTHHHHHHHHHHHHHHHCTTC
T ss_pred HhhhhhcCCHHHHHHHHHHHHHhCccc
Confidence 86300 344667777777666665554
No 28
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.83 E-value=2.3e-19 Score=159.43 Aligned_cols=248 Identities=15% Similarity=0.122 Sum_probs=190.7
Q ss_pred ChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCC
Q 017532 31 DLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIY 110 (370)
Q Consensus 31 ~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~ 110 (370)
.......++..|+|++|+..+.+++.. +|.+...+. ..+.++...|++++|...++++.... .+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~-~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~--------- 70 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAK----KYNSPYIYN-RRAVCYYELAKYDLAQKDIETYFSKV-NAT--------- 70 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHT----TCCCSTTHH-HHHHHHHHTTCHHHHHHHHHHHHTTS-CTT---------
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh----CCCcHHHHH-HHHHHHHHHhhHHHHHHHHHHHHhcc-Cch---------
Confidence 345677889999999999999998654 466433343 34789999999999999999996621 110
Q ss_pred CCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCH
Q 017532 111 PNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEY 190 (370)
Q Consensus 111 ~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 190 (370)
...+ ......+.+....|++++|+..+..++...+.. ..++..+|.++...|++
T Consensus 71 -----~~~~-~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~--------------------~~~~~~l~~~~~~~~~~ 124 (272)
T 3u4t_A 71 -----KAKS-ADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTR--------------------LDMYGQIGSYFYNKGNF 124 (272)
T ss_dssp -----TCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--------------------THHHHHHHHHHHHTTCH
T ss_pred -----hHHH-HHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc--------------------HHHHHHHHHHHHHccCH
Confidence 0011 112234555577899999998888776532211 14567899999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcC
Q 017532 191 NVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGK 270 (370)
Q Consensus 191 ~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g 270 (370)
++|+..++++++..| .++.++..+|......+++++|+.+|++++++.++. ...+..+|.++...|
T Consensus 125 ~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-------------~~~~~~~~~~~~~~~ 190 (272)
T 3u4t_A 125 PLAIQYMEKQIRPTT-TDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI-------------YIGYLWRARANAAQD 190 (272)
T ss_dssp HHHHHHHGGGCCSSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------------HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhcCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc-------------hHHHHHHHHHHHHcC
Confidence 999999999999999 999999999955555679999999999999765442 456778999999999
Q ss_pred C---HHHHHHHHHHHHhhC---CC-----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 017532 271 D---YVSAVREYEECIERD---YN-----DIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSM 336 (370)
Q Consensus 271 ~---~~eA~~~~~~~l~~~---p~-----~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~l 336 (370)
+ +++|+..|+++++.. |+ ...++.++|.++...|++++|+++|+++++++|++ ..+.-.+..+
T Consensus 191 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---~~a~~~l~~~ 264 (272)
T 3u4t_A 191 PDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTN---KKAIDGLKMK 264 (272)
T ss_dssp TTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHC--
T ss_pred cchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccH---HHHHHHhhhh
Confidence 9 999999999999885 54 23688999999999999999999999999999987 5555554444
No 29
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.83 E-value=1.3e-19 Score=151.95 Aligned_cols=163 Identities=13% Similarity=0.031 Sum_probs=144.3
Q ss_pred HHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 017532 127 AVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNG 206 (370)
Q Consensus 127 a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 206 (370)
+.+....|++++|+..+...++..+.. ..+++.+|.++...|++++|+..+++++...|
T Consensus 12 G~~~~~~g~~~~A~~~~~~al~~~p~~--------------------~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~- 70 (184)
T 3vtx_A 12 GDKKRTKGDFDGAIRAYKKVLKADPNN--------------------VETLLKLGKTYMDIGLPNDAIESLKKFVVLDT- 70 (184)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTC--------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC--------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-
Confidence 444467799999988888876443221 24567899999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017532 207 LDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD 286 (370)
Q Consensus 207 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~ 286 (370)
.+..++..+|.++...++++.|...++++..+.+.. ..++..+|.++...|++++|++.|+++++.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~-------------~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~ 137 (184)
T 3vtx_A 71 TSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVY-------------ADAYYKLGLVYDSMGEHDKAIEAYEKTISIK 137 (184)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-------------hHHHHHHHHHHHHhCCchhHHHHHHHHHHhc
Confidence 999999999999999999999999999999765442 5567889999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 287 YNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 287 p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
|.++.+++++|.++..+|++++|++.|+++++++|++
T Consensus 138 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 138 PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence 9999999999999999999999999999999999863
No 30
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.83 E-value=3.8e-20 Score=150.68 Aligned_cols=143 Identities=14% Similarity=0.035 Sum_probs=125.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHH
Q 017532 179 CLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLV 258 (370)
Q Consensus 179 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~ 258 (370)
.||.++..+|++++|+..+++++...| .++..++.+|.+|.+.|++++|+++|++++++.|++ ..+
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~-------------~~a 67 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPR-QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD-------------PKA 67 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHH-HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------HHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------------HHH
Confidence 467788889999999999999999998 888889999999999999999999999999765542 677
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHhCCCcchhHHHHHHHHHHH
Q 017532 259 SRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKV-LENALERVPTVALNETLVVNLCSMY 337 (370)
Q Consensus 259 ~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~-l~~al~~~p~~~~~~~~~~nl~~ly 337 (370)
+.++|.++...|++++|+..|+++++++|+++.+++++|.++...|++++|.+. ++++++++|++ ..+....+.++
T Consensus 68 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~---~~~~~l~~~ll 144 (150)
T 4ga2_A 68 HRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGS---PAVYKLKEQLL 144 (150)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTC---HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCC---HHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999987776 59999999997 66666666776
Q ss_pred H
Q 017532 338 E 338 (370)
Q Consensus 338 e 338 (370)
+
T Consensus 145 ~ 145 (150)
T 4ga2_A 145 D 145 (150)
T ss_dssp H
T ss_pred H
Confidence 5
No 31
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.82 E-value=5e-18 Score=148.93 Aligned_cols=231 Identities=15% Similarity=0.098 Sum_probs=186.0
Q ss_pred HHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHH
Q 017532 69 YLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLD 148 (370)
Q Consensus 69 ~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~ 148 (370)
.+...+.++...|++++|...++++..++ .. + ......+.+....|+.++|+..+..++.
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~------------------~-~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 66 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH-KD------------------I-TYLNNRAAAEYEKGEYETAISTLNDAVE 66 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CC------------------T-HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh-cc------------------H-HHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 34445888999999999999999986543 11 0 1122345556788999999999888775
Q ss_pred HHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 017532 149 FVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGA 228 (370)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A 228 (370)
..+... .. + .....+++.+|.++...|++++|+..+++++...| . +.++...|++++|
T Consensus 67 ~~~~~~----~~--------~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~--------~~~~~~~~~~~~a 124 (258)
T 3uq3_A 67 QGREMR----AD--------Y-KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHR-T--------ADILTKLRNAEKE 124 (258)
T ss_dssp HHHHTT----CC--------H-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-C--------HHHHHHHHHHHHH
T ss_pred hCcccc----cc--------h-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCc-h--------hHHHHHHhHHHHH
Confidence 544321 00 0 01236778999999999999999999999999988 4 5678888999999
Q ss_pred HHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHH
Q 017532 229 KKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSD 308 (370)
Q Consensus 229 ~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~ 308 (370)
+..+++++. .+|.. ..++..+|.+++..|++++|+..|+++++.+|.++.+++++|.++...|++++
T Consensus 125 ~~~~~~~~~------------~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 191 (258)
T 3uq3_A 125 LKKAEAEAY------------VNPEK-AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPE 191 (258)
T ss_dssp HHHHHHHHH------------CCHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHH------------cCcch-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHH
Confidence 999999994 45655 77889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhC
Q 017532 309 SIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVA 359 (370)
Q Consensus 309 A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~ 359 (370)
|+..++++++.+|+. ...+++++.+|... +..+.....++...+..
T Consensus 192 A~~~~~~al~~~~~~---~~~~~~l~~~~~~~--g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 192 AIADCNKAIEKDPNF---VRAYIRKATAQIAV--KEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHHHCTTC---HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHH---HHHHHHHHHHHHHH--hhHHHHHHHHHHHHHhC
Confidence 999999999999997 78899999999754 44666666666655444
No 32
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.82 E-value=1.4e-18 Score=150.82 Aligned_cols=149 Identities=13% Similarity=0.090 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
..++.+|.++...|+|++|+..|+++++..|..+..+++.+|.++...|++++|+.+|++++++ +|+.
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------------~p~~ 75 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK------------NYNL 75 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT------------TCSH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh------------Ccch
Confidence 4677899999999999999999999999987456778888999999999999999999999964 3333
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC--cch
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI-------VAINNKALCLMYLRDLSDSIKVLENALERVPT--VAL 325 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~-------~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~--~~~ 325 (370)
..++..+|.++...|++++|+..|+++++.+|+++ .+++++|.++...|++++|++.|+++++.+|+ +
T Consensus 76 -~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-- 152 (228)
T 4i17_A 76 -ANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWK-- 152 (228)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHH--
T ss_pred -HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCccc--
Confidence 67789999999999999999999999999999999 67999999999999999999999999999998 6
Q ss_pred hHHHHHHHHHHHHh
Q 017532 326 NETLVVNLCSMYEL 339 (370)
Q Consensus 326 ~~~~~~nl~~lyel 339 (370)
...+++++.+|..
T Consensus 153 -~~~~~~l~~~~~~ 165 (228)
T 4i17_A 153 -TDALYSLGVLFYN 165 (228)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHH
Confidence 7888999988864
No 33
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.82 E-value=4.4e-19 Score=154.62 Aligned_cols=146 Identities=12% Similarity=0.097 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
.++..+|.++...|++++|+..++++++..| .+..++..+|.++...|++++|+.+|++++++.+..
T Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------------ 158 (243)
T 2q7f_A 92 TAYYGAGNVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND------------ 158 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc------------
Confidence 4456788899999999999999999999999 899999999999999999999999999999764432
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHH
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLC 334 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~ 334 (370)
..++..+|.++...|++++|+..|++++..+|+++.++.++|.++...|++++|+..++++++.+|++ ......++
T Consensus 159 -~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~~ 234 (243)
T 2q7f_A 159 -TEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDH---MLALHAKK 234 (243)
T ss_dssp -HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTC---HHHHHHHT
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcch---HHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999987 66777766
Q ss_pred HHH
Q 017532 335 SMY 337 (370)
Q Consensus 335 ~ly 337 (370)
.+.
T Consensus 235 ~l~ 237 (243)
T 2q7f_A 235 LLG 237 (243)
T ss_dssp C--
T ss_pred HHH
Confidence 654
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.82 E-value=2.4e-19 Score=163.12 Aligned_cols=252 Identities=12% Similarity=-0.050 Sum_probs=187.5
Q ss_pred CCCcCCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCccc
Q 017532 25 LNDLVPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYE 104 (370)
Q Consensus 25 ~~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~ 104 (370)
|.+..........+...|+|++|+..+.+++.. +|.+...+ ...+.++...|++++|...++++...++......
T Consensus 52 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~-~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 126 (327)
T 3cv0_A 52 PEREEAWRSLGLTQAENEKDGLAIIALNHARML----DPKDIAVH-AALAVSHTNEHNANAALASLRAWLLSQPQYEQLG 126 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC-
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CcCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHH
Confidence 333333444567788999999999999998654 46653443 3458889999999999999999876553221100
Q ss_pred ccCCCCCCCCCcccc--hhHHHHHHH-cCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHH
Q 017532 105 TYPHIYPNRTGSMVP--FSLRWLYAV-LPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLI 181 (370)
Q Consensus 105 ~~~~~~~~~~~~~~~--~~~r~l~a~-~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 181 (370)
. ... ...+ .....+.+. +....|++++|+..+..++...+. ...++..+|
T Consensus 127 ~------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--------------------~~~~~~~la 179 (327)
T 3cv0_A 127 S------VNL-QADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN--------------------DAQLHASLG 179 (327)
T ss_dssp --------------------------CCTTSHHHHHHHHHHHHHHHHHSTT--------------------CHHHHHHHH
T ss_pred H------HHh-HHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC--------------------CHHHHHHHH
Confidence 0 000 0000 000011022 235556666666666555432211 124567899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHh
Q 017532 182 GYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRN 261 (370)
Q Consensus 182 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~ 261 (370)
.++...|++++|+..++++++..| .++.++..+|.++...|++++|+.+|++++++.+.. ..++..
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------------~~~~~~ 245 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDINPGY-------------VRVMYN 245 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------HHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------------HHHHHH
Confidence 999999999999999999999999 999999999999999999999999999999764432 456788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 262 KALIYLVGKDYVSAVREYEECIERDYN------------DIVAINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 262 ~g~~~~~~g~~~eA~~~~~~~l~~~p~------------~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
+|.++...|++++|+..|++++..+|. +..++.++|.++...|++++|...++++++..|+
T Consensus 246 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 246 MAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAK 318 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcch
Confidence 999999999999999999999999999 7899999999999999999999999988877654
No 35
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.81 E-value=4.2e-18 Score=154.15 Aligned_cols=227 Identities=11% Similarity=0.068 Sum_probs=175.2
Q ss_pred HhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCC
Q 017532 33 ASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPN 112 (370)
Q Consensus 33 ~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~ 112 (370)
-..+.++..|+++.|+..++. .+|.+ ...+...+..+.+.+++++|.+.++.+..... .|+
T Consensus 39 ~l~r~yi~~g~~~~al~~~~~-------~~~~~-~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~-----------~P~ 99 (291)
T 3mkr_A 39 FLYRAYLAQRKYGVVLDEIKP-------SSAPE-LQAVRMFAEYLASHSRRDAIVAELDREMSRSV-----------DVT 99 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHSCT-------TSCHH-HHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCC-----------CCS
T ss_pred HHHHHHHHCCCHHHHHHHhcc-------cCChh-HHHHHHHHHHHcCCCcHHHHHHHHHHHHhccc-----------CCC
Confidence 357889999999999975543 13433 33333335678889999999999998742210 011
Q ss_pred CCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHH
Q 017532 113 RTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNV 192 (370)
Q Consensus 113 ~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 192 (370)
. .......+.+....|++++|+..+.. + .. ..++..+|.++..+|++++
T Consensus 100 ~------~~~~~~la~~~~~~g~~~~Al~~l~~-----~------------~~--------~~~~~~l~~~~~~~g~~~~ 148 (291)
T 3mkr_A 100 N------TTFLLMAASIYFYDQNPDAALRTLHQ-----G------------DS--------LECMAMTVQILLKLDRLDL 148 (291)
T ss_dssp C------HHHHHHHHHHHHHTTCHHHHHHHHTT-----C------------CS--------HHHHHHHHHHHHHTTCHHH
T ss_pred C------HHHHHHHHHHHHHCCCHHHHHHHHhC-----C------------CC--------HHHHHHHHHHHHHCCCHHH
Confidence 0 12244556666788999999987765 0 00 1455688999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcC
Q 017532 193 CFDLMNESIGRGNGLDPILVSKLG--FIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGK 270 (370)
Q Consensus 193 A~~~~~~~l~~~~~~~~~~~~~lg--~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g 270 (370)
|+..++++++.+| ++.......+ .++...|++++|+..|+++++..+++ ..++.++|.++...|
T Consensus 149 A~~~l~~~~~~~p-~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~-------------~~~~~~la~~~~~~g 214 (291)
T 3mkr_A 149 ARKELKKMQDQDE-DATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPT-------------LLLLNGQAACHMAQG 214 (291)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCC-------------HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhCc-CcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCc-------------HHHHHHHHHHHHHcC
Confidence 9999999999999 7754443333 34445699999999999999764432 567889999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHH-HHHHHHHHHHhCCCc
Q 017532 271 DYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSD-SIKVLENALERVPTV 323 (370)
Q Consensus 271 ~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~-A~~~l~~al~~~p~~ 323 (370)
++++|+..|+++++.+|+++.+++|+|.++...|+.++ +.++++++++.+|++
T Consensus 215 ~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~ 268 (291)
T 3mkr_A 215 RWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSH 268 (291)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999987 568999999999986
No 36
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.81 E-value=4.7e-18 Score=148.02 Aligned_cols=198 Identities=12% Similarity=0.069 Sum_probs=160.8
Q ss_pred HHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 017532 126 YAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGN 205 (370)
Q Consensus 126 ~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 205 (370)
.+......|++++|+..+..++...+.. ..++..+|.++...|++++|+..++++++..|
T Consensus 29 ~a~~~~~~~~~~~A~~~~~~~l~~~~~~--------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 88 (243)
T 2q7f_A 29 QMGRGSEFGDYEKAAEAFTKAIEENKED--------------------AIPYINFANLLSSVNELERALAFYDKALELDS 88 (243)
T ss_dssp -------------CCTTHHHHHTTCTTC--------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHhCccc--------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 3445577899999998888776422111 24567889999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh
Q 017532 206 GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIER 285 (370)
Q Consensus 206 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~ 285 (370)
.+..++..+|.++...|++++|+.+|++++++.+.. ..++..+|.++...|++++|+..|+++++.
T Consensus 89 -~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 154 (243)
T 2q7f_A 89 -SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN-------------GDLFYMLGTVLVKLEQPKLALPYLQRAVEL 154 (243)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS-------------HHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred -cchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999765442 456788999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCCC
Q 017532 286 DYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDD 362 (370)
Q Consensus 286 ~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d~ 362 (370)
+|.++.++.++|.++...|++++|+..++++++.+|+. ..++++++.+|... +..+.....++......|++
T Consensus 155 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~--~~~~~A~~~~~~~~~~~p~~ 226 (243)
T 2q7f_A 155 NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGH---ADAFYNAGVTYAYK--ENREKALEMLDKAIDIQPDH 226 (243)
T ss_dssp CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHT--TCTTHHHHHHHHHHHHCTTC
T ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHc--cCHHHHHHHHHHHHccCcch
Confidence 99999999999999999999999999999999999987 77899999999754 34677777777777777765
No 37
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.80 E-value=1.1e-17 Score=146.85 Aligned_cols=201 Identities=11% Similarity=0.028 Sum_probs=170.6
Q ss_pred HHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 017532 126 YAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGN 205 (370)
Q Consensus 126 ~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 205 (370)
.+.+....|++++|+..+..++...+.. ..+++.+|.++...|++++|+..++++++..|
T Consensus 43 ~a~~~~~~~~~~~A~~~~~~al~~~~~~--------------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 102 (252)
T 2ho1_A 43 LGLGYLQRGNTEQAKVPLRKALEIDPSS--------------------ADAHAALAVVFQTEMEPKLADEEYRKALASDS 102 (252)
T ss_dssp HHHHHHHTTCTGGGHHHHHHHHHHCTTC--------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCh--------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 4455567899999998888776432111 24567899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh
Q 017532 206 GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIER 285 (370)
Q Consensus 206 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~ 285 (370)
.+..++..+|.++...|++++|+.+|++++. . ...|.. ..++..+|.+++..|++++|+..|+++++.
T Consensus 103 -~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~-------~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 170 (252)
T 2ho1_A 103 -RNARVLNNYGGFLYEQKRYEEAYQRLLEASQ---D-------TLYPER-SRVFENLGLVSLQMKKPAQAKEYFEKSLRL 170 (252)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---C-------TTCTTH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh---C-------ccCccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 8999999999999999999999999999984 0 123433 667888999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCCCC
Q 017532 286 DYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDDF 363 (370)
Q Consensus 286 ~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d~~ 363 (370)
+|.+..++.++|.++...|++++|+..++++++..|.. ...+..++.+|... +..+....+++.+....|++.
T Consensus 171 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--g~~~~A~~~~~~~~~~~p~~~ 243 (252)
T 2ho1_A 171 NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN---ARSLLLGIRLAKVF--EDRDTAASYGLQLKRLYPGSL 243 (252)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCC---HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTSH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---HHHHHHHHHHHHHc--cCHHHHHHHHHHHHHHCCCCH
Confidence 99999999999999999999999999999999999987 77788888888743 447788888888877777753
No 38
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.80 E-value=3.3e-18 Score=151.84 Aligned_cols=178 Identities=12% Similarity=0.046 Sum_probs=152.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccc
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLD---PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLS 250 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~ 250 (370)
...++.+|..++..|+|++|+..|+++++..| .+ +.+++.+|.++...|++++|+..|++++++.|++
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~-------- 85 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQID-------- 85 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC--------
Confidence 35678899999999999999999999999999 77 8899999999999999999999999999876653
Q ss_pred hHHHHHHHHHhHHHHHHH--------cCCHHHHHHHHHHHHhhCCCCHHHH-----------------HHHHHHHHHhCC
Q 017532 251 EVEFRNLVSRNKALIYLV--------GKDYVSAVREYEECIERDYNDIVAI-----------------NNKALCLMYLRD 305 (370)
Q Consensus 251 ~p~~~~~~~~~~g~~~~~--------~g~~~eA~~~~~~~l~~~p~~~~~~-----------------~nla~~~~~~g~ 305 (370)
|.. ..+++.+|.+++. .|++++|+..|+++++.+|++..+. +++|.++...|+
T Consensus 86 -~~~-~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~ 163 (261)
T 3qky_A 86 -PRV-PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERREL 163 (261)
T ss_dssp -TTH-HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred -chh-HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 222 5678899999999 9999999999999999999987655 889999999999
Q ss_pred HHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccC--------CchhhHHHHHHHHhhhCCCC
Q 017532 306 LSDSIKVLENALERVPTVALNETLVVNLCSMYELAYV--------NHSDIKRTLSSWIGRVAPDD 362 (370)
Q Consensus 306 ~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~--------~~~~~~~~ll~~~~~~~~d~ 362 (370)
+++|+..|+++++.+|+.......+++++.+|..... +..+++....+.+....|++
T Consensus 164 ~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 164 YEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 9999999999999999876567899999999874411 33466677777776666665
No 39
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.80 E-value=6.7e-18 Score=158.19 Aligned_cols=269 Identities=12% Similarity=0.020 Sum_probs=158.2
Q ss_pred HhHHHHHHcCChHHHHHHHHHhhhccccCCchHH---HHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCC
Q 017532 33 ASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHH---LTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHI 109 (370)
Q Consensus 33 ~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~---~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~ 109 (370)
.....+...|+|++|+..+++++... |.+. ...+...+.++...|++++|...++++..+....
T Consensus 14 ~~g~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------- 80 (406)
T 3sf4_A 14 LEGERLCKSGDCRAGVSFFEAAVQVG----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--------- 80 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---------
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcC----cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc---------
Confidence 46778899999999999999987653 4332 2234445788999999999999998874331100
Q ss_pred CCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 017532 110 YPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKE 189 (370)
Q Consensus 110 ~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 189 (370)
.+ ...........+.+....|++++|+..+...+...+..-.. .....++..+|.++...|+
T Consensus 81 -~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------------~~~~~~~~~l~~~~~~~g~ 142 (406)
T 3sf4_A 81 -GD---QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK--------------VGEARALYNLGNVYHAKGK 142 (406)
T ss_dssp -TC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH--------------HHHHHHHHHHHHHHHHHHH
T ss_pred -cc---cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc--------------cchHHHHHHHHHHHHHcCC
Confidence 00 00001112234555678899999999998887665543100 0112445566666666666
Q ss_pred --------------------HHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCc
Q 017532 190 --------------------YNVCFDLMNESIGRGN-----GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKF 244 (370)
Q Consensus 190 --------------------~~~A~~~~~~~l~~~~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~ 244 (370)
+++|+..+++++.... .....++..+|.++...|++++|+.+|++++++.+..
T Consensus 143 ~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-- 220 (406)
T 3sf4_A 143 SFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF-- 220 (406)
T ss_dssp TCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT--
T ss_pred cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc--
Confidence 6666666666654421 0122345566666666666666666666666655442
Q ss_pred cCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 017532 245 EDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYND------IVAINNKALCLMYLRDLSDSIKVLENALE 318 (370)
Q Consensus 245 ~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~------~~~~~nla~~~~~~g~~~~A~~~l~~al~ 318 (370)
...+.. ..++.++|.++...|++++|+.+|++++...|.. ..++.++|.++...|++++|+..++++++
T Consensus 221 ----~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 221 ----GDKAAE-RRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp ----TCHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----CCcHHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 112222 4556666666666666666666666666554433 45566666666666666666666666665
Q ss_pred hCCCc---chhHHHHHHHHHHHHh
Q 017532 319 RVPTV---ALNETLVVNLCSMYEL 339 (370)
Q Consensus 319 ~~p~~---~~~~~~~~nl~~lyel 339 (370)
..+.. .....++.+++.+|..
T Consensus 296 ~~~~~~~~~~~~~~~~~la~~~~~ 319 (406)
T 3sf4_A 296 IAQELNDRIGEGRACWSLGNAYTA 319 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHH
Confidence 53321 1113345556665553
No 40
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.80 E-value=2.4e-18 Score=162.18 Aligned_cols=283 Identities=11% Similarity=-0.006 Sum_probs=203.9
Q ss_pred HhHHHHHHcCChHHHHHHHHHhhhccccCCchHHH---HHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCC
Q 017532 33 ASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHL---TYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHI 109 (370)
Q Consensus 33 ~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~---~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~ 109 (370)
.....+...|+|++|+..+++++... |.+.. ..+...+.++...|++++|...++++..+....
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--------- 119 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAG----TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM--------- 119 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC----CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT---------
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhc----ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc---------
Confidence 35566789999999999999987653 44322 234445788999999999999998885331000
Q ss_pred CCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 017532 110 YPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKE 189 (370)
Q Consensus 110 ~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 189 (370)
.+.. ... ......+.+....|++++|+..+...+......-. ......++..+|.++...|+
T Consensus 120 -~~~~--~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--------------~~~~~~~~~~l~~~~~~~g~ 181 (411)
T 4a1s_A 120 -NDRL--GEA-KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGD--------------RLSEGRALYNLGNVYHAKGK 181 (411)
T ss_dssp -TCHH--HHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHHHHHHH
T ss_pred -cCch--HHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc--------------hHHHHHHHHHHHHHHHHcCc
Confidence 0000 011 11223455567889999999999888765543210 01123567789999999999
Q ss_pred -----------------HHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCC
Q 017532 190 -----------------YNVCFDLMNESIGRGN-----GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDG 247 (370)
Q Consensus 190 -----------------~~~A~~~~~~~l~~~~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~ 247 (370)
+++|+..+++++...+ .....++..+|.++...|++++|+.+|++++++.+..
T Consensus 182 ~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----- 256 (411)
T 4a1s_A 182 HLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF----- 256 (411)
T ss_dssp HHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-----
T ss_pred ccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc-----
Confidence 9999999999877542 1234577889999999999999999999999887652
Q ss_pred ccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 017532 248 LLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYND------IVAINNKALCLMYLRDLSDSIKVLENALERVP 321 (370)
Q Consensus 248 ~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~------~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p 321 (370)
.++.....++.++|.++...|++++|+.+|++++...|.. ..++.++|.++...|++++|+.++++++...+
T Consensus 257 --~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 334 (411)
T 4a1s_A 257 --GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ 334 (411)
T ss_dssp --TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred --CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 2233336688899999999999999999999999887643 67889999999999999999999999998865
Q ss_pred Cc---chhHHHHHHHHHHHHhccCCchhhHHHHHHHH
Q 017532 322 TV---ALNETLVVNLCSMYELAYVNHSDIKRTLSSWI 355 (370)
Q Consensus 322 ~~---~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~ 355 (370)
.. .....++++++.+|... +..++...+++..
T Consensus 335 ~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~a 369 (411)
T 4a1s_A 335 ELGDRIGEARACWSLGNAHSAI--GGHERALKYAEQH 369 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred HCCChHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHH
Confidence 42 12245778888888754 3456666665544
No 41
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.80 E-value=1.3e-17 Score=143.21 Aligned_cols=201 Identities=8% Similarity=-0.040 Sum_probs=167.2
Q ss_pred HHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 017532 126 YAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGN 205 (370)
Q Consensus 126 ~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 205 (370)
.+.+....|++++|+..+..++...+.. ..++..+|.++...|++++|+..+++++...|
T Consensus 14 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~--------------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 73 (225)
T 2vq2_A 14 LAMEYMRGQDYRQATASIEDALKSDPKN--------------------ELAWLVRAEIYQYLKVNDKAQESFRQALSIKP 73 (225)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC--------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCccc--------------------hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 3445577899999988887765432211 24567889999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHh
Q 017532 206 GLDPILVSKLGFIQMQV-GDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIE 284 (370)
Q Consensus 206 ~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~ 284 (370)
.+..++..+|.++... |++++|+.+|+++++ .+ ..|.. ..++..+|.++...|++++|+..|+++++
T Consensus 74 -~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~---------~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 141 (225)
T 2vq2_A 74 -DSAEINNNYGWFLCGRLNRPAESMAYFDKALA-DP---------TYPTP-YIANLNKGICSAKQGQFGLAEAYLKRSLA 141 (225)
T ss_dssp -TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-ST---------TCSCH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -CChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-Cc---------CCcch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8999999999999999 999999999999995 11 23333 56788899999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCCCC
Q 017532 285 RDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVP-TVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDDF 363 (370)
Q Consensus 285 ~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p-~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d~~ 363 (370)
.+|.++.++.++|.++...|++++|+..++++++..| .. ...+..+..++.. .+..++...+.+.+....|++.
T Consensus 142 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~p~~~ 216 (225)
T 2vq2_A 142 AQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQ---ADDLLLGWKIAKA--LGNAQAAYEYEAQLQANFPYSE 216 (225)
T ss_dssp HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCC---HHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCH
T ss_pred hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHh--cCcHHHHHHHHHHHHHhCCCCH
Confidence 9999999999999999999999999999999999999 76 5566677777664 3446778888888777777653
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.80 E-value=1e-17 Score=147.13 Aligned_cols=209 Identities=13% Similarity=0.092 Sum_probs=164.1
Q ss_pred CchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHH
Q 017532 62 QPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLD 141 (370)
Q Consensus 62 ~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~ 141 (370)
+|.+....+...+.++...|++++|...++++...++.. + ......+.+....|++++|+.
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~------------------~-~~~~~la~~~~~~~~~~~A~~ 92 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSS------------------A-DAHAALAVVFQTEMEPKLADE 92 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTC------------------H-HHHHHHHHHHHHTTCHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCh------------------H-HHHHHHHHHHHHcCCHHHHHH
Confidence 454433344445677777888888888877775432110 0 112223444466777777777
Q ss_pred HHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHH
Q 017532 142 RFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIG--RGNGLDPILVSKLGFIQ 219 (370)
Q Consensus 142 ~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~~lg~~~ 219 (370)
.+..++...+.. ..+++.+|.++...|++++|+.++++++. ..| .+..++..+|.++
T Consensus 93 ~~~~a~~~~~~~--------------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~la~~~ 151 (252)
T 2ho1_A 93 EYRKALASDSRN--------------------ARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYP-ERSRVFENLGLVS 151 (252)
T ss_dssp HHHHHHHHCTTC--------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCT-THHHHHHHHHHHH
T ss_pred HHHHHHHHCcCc--------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCc-ccHHHHHHHHHHH
Confidence 776665332110 14556888999999999999999999999 777 7888999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 017532 220 MQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALC 299 (370)
Q Consensus 220 ~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~ 299 (370)
...|++++|+.+|+++++..+.. ..++..+|.++...|++++|+..|+++++.+|.+..++..++.+
T Consensus 152 ~~~g~~~~A~~~~~~~~~~~~~~-------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 218 (252)
T 2ho1_A 152 LQMKKPAQAKEYFEKSLRLNRNQ-------------PSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRL 218 (252)
T ss_dssp HHTTCHHHHHHHHHHHHHHCSCC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCccc-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 99999999999999999764432 45678899999999999999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 300 LMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 300 ~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
+...|++++|++.++++++.+|+.
T Consensus 219 ~~~~g~~~~A~~~~~~~~~~~p~~ 242 (252)
T 2ho1_A 219 AKVFEDRDTAASYGLQLKRLYPGS 242 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHccCHHHHHHHHHHHHHHCCCC
Confidence 999999999999999999999986
No 43
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.80 E-value=2.7e-18 Score=149.05 Aligned_cols=182 Identities=8% Similarity=0.010 Sum_probs=153.9
Q ss_pred HHHcCcccCCccchHHHHHHHHHHHH-HHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 017532 126 YAVLPIKLSNRQVGLDRFYELLDFVR-EKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRG 204 (370)
Q Consensus 126 ~a~~~~~~g~~~~al~~l~~ll~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 204 (370)
.+.+....|++.+|+..+..++...+ .. ..+++.+|.++...|++++|+..++++++.+
T Consensus 13 ~g~~~~~~~~~~~A~~~~~~al~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 72 (228)
T 4i17_A 13 EGNDALNAKNYAVAFEKYSEYLKLTNNQD--------------------SVTAYNCGVCADNIKKYKEAADYFDIAIKKN 72 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTTTCC--------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHhccCCCC--------------------cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC
Confidence 34455778999999998888765432 10 1345679999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHh
Q 017532 205 NGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIE 284 (370)
Q Consensus 205 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~ 284 (370)
| .+..++..+|.++..+|++++|+..|++++++.+++. ...... ..++.++|.++...|++++|++.|+++++
T Consensus 73 p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~~-~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 145 (228)
T 4i17_A 73 Y-NLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNA-----TIEKLY-AIYYLKEGQKFQQAGNIEKAEENYKHATD 145 (228)
T ss_dssp C-SHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH-----HHHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred c-chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH-----HHHHHH-HHHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence 9 9999999999999999999999999999998766531 111222 57789999999999999999999999999
Q ss_pred hCCC--CHHHHHHHHHHHHHhCCH---------------------------HHHHHHHHHHHHhCCCcchhHHHHHHHHH
Q 017532 285 RDYN--DIVAINNKALCLMYLRDL---------------------------SDSIKVLENALERVPTVALNETLVVNLCS 335 (370)
Q Consensus 285 ~~p~--~~~~~~nla~~~~~~g~~---------------------------~~A~~~l~~al~~~p~~~~~~~~~~nl~~ 335 (370)
.+|+ ++.+++++|.++...|+. ++|+.+|+++++++|++ ..+...++.
T Consensus 146 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~---~~~~~~l~~ 222 (228)
T 4i17_A 146 VTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNR---TEIKQMQDQ 222 (228)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTC---HHHHHHHHH
T ss_pred cCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC---HHHHHHHHH
Confidence 9999 999999999999999998 99999999999999987 666666666
Q ss_pred HH
Q 017532 336 MY 337 (370)
Q Consensus 336 ly 337 (370)
+.
T Consensus 223 i~ 224 (228)
T 4i17_A 223 VK 224 (228)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 44
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.79 E-value=3.5e-18 Score=155.24 Aligned_cols=285 Identities=13% Similarity=0.021 Sum_probs=209.0
Q ss_pred HhHHHHHHcCChHHHHHHHHHhhhccccCCchHH---HHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCC
Q 017532 33 ASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHH---LTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHI 109 (370)
Q Consensus 33 ~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~---~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~ 109 (370)
.....+...|+|++|+..+++++... |.+. ...+...+.++...|++++|...++++..+.. ..
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~------~~--- 76 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVG----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLAR------TI--- 76 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------HH---
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhC----cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh------cc---
Confidence 35677899999999999999987653 4332 23344457889999999999999888743311 00
Q ss_pred CCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 017532 110 YPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKE 189 (370)
Q Consensus 110 ~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 189 (370)
++.. ... ......+.+....|++++|+..+...+...+..-. ......++..+|.++...|+
T Consensus 77 -~~~~--~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--------------~~~~~~~~~~l~~~~~~~~~ 138 (338)
T 3ro2_A 77 -GDQL--GEA-KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND--------------KVGEARALYNLGNVYHAKGK 138 (338)
T ss_dssp -TCHH--HHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHHHH
T ss_pred -cccH--HHH-HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC--------------chHHHHHHHHHHHHHHHcCc
Confidence 0000 011 11223455567889999999988887765543210 01124577789999999999
Q ss_pred --------------------HHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCc
Q 017532 190 --------------------YNVCFDLMNESIGRGN-----GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKF 244 (370)
Q Consensus 190 --------------------~~~A~~~~~~~l~~~~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~ 244 (370)
+++|+..+++++...+ .....++..+|.++...|++++|+.+|++++++.+..
T Consensus 139 ~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-- 216 (338)
T 3ro2_A 139 SFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF-- 216 (338)
T ss_dssp TSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH--
T ss_pred ccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--
Confidence 9999999999876532 0234578899999999999999999999999887652
Q ss_pred cCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 017532 245 EDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYND------IVAINNKALCLMYLRDLSDSIKVLENALE 318 (370)
Q Consensus 245 ~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~------~~~~~nla~~~~~~g~~~~A~~~l~~al~ 318 (370)
.++.....++.++|.++...|++++|+..|++++...+.. ..++.++|.++...|++++|+..++++++
T Consensus 217 -----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 291 (338)
T 3ro2_A 217 -----GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 291 (338)
T ss_dssp -----TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 2233337789999999999999999999999999886654 67899999999999999999999999998
Q ss_pred hCCCc---chhHHHHHHHHHHHHhccCCchhhHHHHHHHHhh
Q 017532 319 RVPTV---ALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGR 357 (370)
Q Consensus 319 ~~p~~---~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~ 357 (370)
..+.. .....++.+++.+|.... ..++...+++....
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 292 IAQELKDRIGEGRACWSLGNAYTALG--NHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHH
Confidence 86542 122447788999988543 36666666665543
No 45
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.79 E-value=2.4e-17 Score=158.35 Aligned_cols=301 Identities=8% Similarity=-0.035 Sum_probs=200.9
Q ss_pred hHHHHHHcCChHHHHHHHHHhhhcc-----ccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCC
Q 017532 34 SLQDLATRGSWRTIIDNVSRARSQS-----LLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPH 108 (370)
Q Consensus 34 ~l~~l~~~g~~~~Ai~~~~~~~~~~-----~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~ 108 (370)
........|++++|++.+.+++... ...+|.. ...+...++++..+|++++|...++++..+....
T Consensus 57 Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~-~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~-------- 127 (472)
T 4g1t_A 57 LAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRS-LVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF-------- 127 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTT-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc--------
Confidence 3455678899999999999975431 1224543 3334445899999999999999998875442100
Q ss_pred CCCCCCCcccchhH-HHHHHHcCcccCCccchHHHHHHHHHHHHHHHHH-----------HhhHhhHHhHHHHHHHH---
Q 017532 109 IYPNRTGSMVPFSL-RWLYAVLPIKLSNRQVGLDRFYELLDFVREKLAR-----------KLAEKLEESVKSWKKRE--- 173 (370)
Q Consensus 109 ~~~~~~~~~~~~~~-r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~-----------~~~~~~~~~~~~~~~~~--- 173 (370)
.+......+... ....+.+....++.++|++.|..++...+..... ...+...++++.+++.+
T Consensus 128 --~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 128 --SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp --CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred --ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 000000111111 1112233344567889999998877543221110 01111223444444433
Q ss_pred ---HHHHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccC
Q 017532 174 ---IFVLNCLIGYHL----SSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFED 246 (370)
Q Consensus 174 ---~~~~~~la~~~~----~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~ 246 (370)
..++..++..+. ..|++++|+..+++++..+| .+..++..+|.++...|++++|+..|++++++.|+.
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---- 280 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNN---- 280 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCh----
Confidence 445556665444 45788999999999999999 999999999999999999999999999999765542
Q ss_pred CccchHHHHHHHHHhHHHHHHHc-------------------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHH
Q 017532 247 GLLSEVEFRNLVSRNKALIYLVG-------------------KDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLS 307 (370)
Q Consensus 247 ~~~~~p~~~~~~~~~~g~~~~~~-------------------g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~ 307 (370)
..++.++|.+|..+ +.+++|+..|+++++.+|.+..+++++|.++...|+++
T Consensus 281 ---------~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~ 351 (472)
T 4g1t_A 281 ---------AYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYE 351 (472)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHH
T ss_pred ---------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHH
Confidence 55677788877543 45788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCC
Q 017532 308 DSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAP 360 (370)
Q Consensus 308 ~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~ 360 (370)
+|++.|+++++.+|++.....+.++++.+.... .+..+++.....+.-...|
T Consensus 352 ~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Ai~~y~kal~i~~ 403 (472)
T 4g1t_A 352 EAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQ-MKCEDKAIHHFIEGVKINQ 403 (472)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCc
Confidence 999999999999987644445667777665432 3334444444444333333
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.79 E-value=2.6e-18 Score=152.57 Aligned_cols=239 Identities=12% Similarity=0.019 Sum_probs=189.3
Q ss_pred HHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHH
Q 017532 72 YNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVR 151 (370)
Q Consensus 72 ~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~ 151 (370)
..+.++...|++++|...++++...++... . . ....+.+....|++++|+..+..++. ..
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~----------------~--~-~~~l~~~~~~~~~~~~A~~~~~~a~~-~~ 67 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKKYNSP----------------Y--I-YNRRAVCYYELAKYDLAQKDIETYFS-KV 67 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTCCCS----------------T--T-HHHHHHHHHHTTCHHHHHHHHHHHHT-TS
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCcH----------------H--H-HHHHHHHHHHHhhHHHHHHHHHHHHh-cc
Confidence 357889999999999999999976553111 0 1 12234455778999999988877654 11
Q ss_pred HHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 017532 152 EKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKS 231 (370)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 231 (370)
. ... ....++..+|.++...|++++|+..|+++++.+| .++.++..+|.++...|++++|+.+
T Consensus 68 ~------~~~----------~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~ 130 (272)
T 3u4t_A 68 N------ATK----------AKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQY 130 (272)
T ss_dssp C------TTT----------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred C------chh----------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHH
Confidence 0 000 0124567899999999999999999999999999 8999999999999999999999999
Q ss_pred HHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC---HHH
Q 017532 232 FNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRD---LSD 308 (370)
Q Consensus 232 ~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~---~~~ 308 (370)
|++++++.+ .. ..++.++|...+..+++++|++.|+++++.+|++..++.++|.++...|+ +++
T Consensus 131 ~~~al~~~~------------~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 197 (272)
T 3u4t_A 131 MEKQIRPTT------------TD-PKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGL 197 (272)
T ss_dssp HGGGCCSSC------------CC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCT
T ss_pred HHHHhhcCC------------Cc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHH
Confidence 999995422 22 56788899555566799999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHhC---CCcc--hhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCCC
Q 017532 309 SIKVLENALERV---PTVA--LNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDD 362 (370)
Q Consensus 309 A~~~l~~al~~~---p~~~--~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d~ 362 (370)
|+..++++++.. |+.. ....+.++++.+|... +..+++...+++.-...|++
T Consensus 198 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~al~~~p~~ 254 (272)
T 3u4t_A 198 AKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN--RDKVKADAAWKNILALDPTN 254 (272)
T ss_dssp THHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCccH
Confidence 999999999986 4421 1136788899999754 44788888888887777775
No 47
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.78 E-value=6.3e-18 Score=133.30 Aligned_cols=120 Identities=20% Similarity=0.198 Sum_probs=100.5
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHH
Q 017532 200 SIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREY 279 (370)
Q Consensus 200 ~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~ 279 (370)
+..++| .....+..+|..+++.|++++|+++|++++++.|.. ..++.++|.++..+|++++|+..|
T Consensus 5 ~a~inP-~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~-------------~~~~~~~~~~~~~~~~~~~A~~~~ 70 (126)
T 4gco_A 5 LAYINP-ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN-------------AILYSNRAACLTKLMEFQRALDDC 70 (126)
T ss_dssp --CCCH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHCH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------------HHHHHHHhhHHHhhccHHHHHHHH
Confidence 445677 777888889999999999999999999998764442 567888999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 017532 280 EECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSM 336 (370)
Q Consensus 280 ~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~l 336 (370)
+++++++|+++.+++++|.++..+|++++|++.|+++++++|++ ..+..+|+.+
T Consensus 71 ~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~---~~a~~~l~~~ 124 (126)
T 4gco_A 71 DTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSN---EEAREGVRNC 124 (126)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHH
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCC---HHHHHHHHHh
Confidence 99999999999999999999999999999999999999999987 6666666654
No 48
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.78 E-value=1.1e-17 Score=161.87 Aligned_cols=177 Identities=11% Similarity=-0.008 Sum_probs=155.1
Q ss_pred HHHHcCcccCCc-cchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 017532 125 LYAVLPIKLSNR-QVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGR 203 (370)
Q Consensus 125 l~a~~~~~~g~~-~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 203 (370)
..+.+....|++ ++|+..+..++...+.. ..+++.+|.++...|++++|+..|+++++.
T Consensus 107 ~lg~~~~~~g~~~~~A~~~~~~al~~~p~~--------------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 166 (474)
T 4abn_A 107 LKGKALNVTPDYSPEAEVLLSKAVKLEPEL--------------------VEAWNQLGEVYWKKGDVTSAHTCFSGALTH 166 (474)
T ss_dssp HHHHHHTSSSSCCHHHHHHHHHHHHHCTTC--------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccccHHHHHHHHHHHHhhCCCC--------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 445666788999 99998888876433211 245678999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHc-----
Q 017532 204 GNGLDPILVSKLGFIQMQV---------GDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVG----- 269 (370)
Q Consensus 204 ~~~~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~----- 269 (370)
+| + ..++..+|.++... |++++|+.+|++++++.++. ..++.++|.++...
T Consensus 167 ~p-~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-------------~~~~~~lg~~~~~~~~~~~ 231 (474)
T 4abn_A 167 CK-N-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD-------------GRSWYILGNAYLSLYFNTG 231 (474)
T ss_dssp CC-C-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC-------------HHHHHHHHHHHHHHHHHTT
T ss_pred CC-C-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC-------------HHHHHHHHHHHHHHHHhhc
Confidence 99 6 78999999999999 99999999999999775542 56789999999999
Q ss_pred ---CCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHh
Q 017532 270 ---KDYVSAVREYEECIERDY---NDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYEL 339 (370)
Q Consensus 270 ---g~~~eA~~~~~~~l~~~p---~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel 339 (370)
|++++|+..|+++++++| +++.+++++|.++...|++++|++.|+++++++|++ ...+.+++.++..
T Consensus 232 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~a~~~l~~~~~~ 304 (474)
T 4abn_A 232 QNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAW---PEPQQREQQLLEF 304 (474)
T ss_dssp CCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHH
Confidence 999999999999999999 999999999999999999999999999999999998 6777777777654
No 49
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.78 E-value=1.9e-18 Score=174.38 Aligned_cols=162 Identities=16% Similarity=0.098 Sum_probs=145.0
Q ss_pred HHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 017532 127 AVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNG 206 (370)
Q Consensus 127 a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 206 (370)
+.++...|+.++|+..+.++++..+.. ..+++++|.+|..+|++++|+..|+++++.+|
T Consensus 16 G~~~~~~G~~~eAi~~~~kAl~l~P~~--------------------~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P- 74 (723)
T 4gyw_A 16 ANIKREQGNIEEAVRLYRKALEVFPEF--------------------AAAHSNLASVLQQQGKLQEALMHYKEAIRISP- 74 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSCC--------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC--------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-
Confidence 445577899999988888776433211 25678999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017532 207 LDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD 286 (370)
Q Consensus 207 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~ 286 (370)
+++.+++++|.++..+|++++|+++|++++++.++. ..++.++|.++..+|++++|++.|+++++++
T Consensus 75 ~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~-------------~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~ 141 (723)
T 4gyw_A 75 TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF-------------ADAHSNLASIHKDSGNIPEAIASYRTALKLK 141 (723)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999775542 6789999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 287 YNDIVAINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 287 p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
|+++.+++++|.++...|++++|++.+++++++.|+
T Consensus 142 P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 142 PDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp SCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred CCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence 999999999999999999999999999999998664
No 50
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.78 E-value=5e-17 Score=134.88 Aligned_cols=170 Identities=14% Similarity=0.089 Sum_probs=149.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
..+++.+|.++...|++++|+..++++++..| .+..++..+|.++...|++++|+.+|+++++..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----------- 75 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDN----------- 75 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----------
Confidence 35677899999999999999999999999999 899999999999999999999999999999764432
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHH
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNL 333 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl 333 (370)
..++..+|.++...|++++|+..|++++..+|.++.++.++|.++...|++++|++.++++++..|+. ..+.+++
T Consensus 76 --~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l 150 (186)
T 3as5_A 76 --VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE---GKVHRAI 150 (186)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHH
T ss_pred --HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc---hHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999987 7888999
Q ss_pred HHHHHhccCCchhhHHHHHHHHhhhCCCC
Q 017532 334 CSMYELAYVNHSDIKRTLSSWIGRVAPDD 362 (370)
Q Consensus 334 ~~lyel~~~~~~~~~~~ll~~~~~~~~d~ 362 (370)
+.+|... +..+.....++......|++
T Consensus 151 a~~~~~~--~~~~~A~~~~~~~~~~~~~~ 177 (186)
T 3as5_A 151 AFSYEQM--GRHEEALPHFKKANELDEGA 177 (186)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHc--CCHHHHHHHHHHHHHcCCCc
Confidence 9998753 44677777776665544443
No 51
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.77 E-value=1.3e-18 Score=141.72 Aligned_cols=118 Identities=12% Similarity=0.032 Sum_probs=109.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCC
Q 017532 192 VCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKD 271 (370)
Q Consensus 192 ~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~ 271 (370)
.+-..+++++..+| .+..+++.+|.++.+.|++++|+..|++++.+.|.+ ..+|.++|.++...|+
T Consensus 20 ~~~~~l~~al~l~p-~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~-------------~~~~~~lg~~~~~~g~ 85 (151)
T 3gyz_A 20 NSGATLKDINAIPD-DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN-------------VDYIMGLAAIYQIKEQ 85 (151)
T ss_dssp HTSCCTGGGCCSCH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------HHHHHHHHHHHHHTTC
T ss_pred HCCCCHHHHhCCCH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------------HHHHHHHHHHHHHHcc
Confidence 34466788889999 999999999999999999999999999999765542 6679999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 272 YVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 272 ~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
+++|+..|+++++++|+++.+++++|.++..+|++++|+..|++++++.|+.
T Consensus 86 ~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 86 FQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 9999999999999999999999999999999999999999999999999975
No 52
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.77 E-value=3.8e-17 Score=141.94 Aligned_cols=178 Identities=10% Similarity=0.076 Sum_probs=151.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccch
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLD---PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSE 251 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~ 251 (370)
..++.+|..++..|+|++|+..|+++++..| .+ ..+++.+|.++...|++++|+..|+++++..|++
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~--------- 74 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH--------- 74 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC---------
Confidence 4677899999999999999999999999988 54 4789999999999999999999999999876653
Q ss_pred HHHHHHHHHhHHHHHHH------------------cCCHHHHHHHHHHHHhhCCCCHHHH-----------------HHH
Q 017532 252 VEFRNLVSRNKALIYLV------------------GKDYVSAVREYEECIERDYNDIVAI-----------------NNK 296 (370)
Q Consensus 252 p~~~~~~~~~~g~~~~~------------------~g~~~eA~~~~~~~l~~~p~~~~~~-----------------~nl 296 (370)
+.. ..+++.+|.+++. .|++++|+..|+++++.+|+++.+. ..+
T Consensus 75 ~~~-~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~ 153 (225)
T 2yhc_A 75 PNI-DYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSV 153 (225)
T ss_dssp TTH-HHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcH-HHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 3567788888876 6799999999999999999987554 578
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCCCCCC
Q 017532 297 ALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDDFDS 365 (370)
Q Consensus 297 a~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d~~~~ 365 (370)
|.++...|++++|+..|+++++..|+......++++++.+|... +..+.....++.+...+|++.+.
T Consensus 154 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~--g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 154 AEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQM--QMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCCSCCCCC
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHc--CCcHHHHHHHHHHHhhCCCchhh
Confidence 99999999999999999999999998755567899999999854 44788888888888888887654
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.77 E-value=9.3e-17 Score=137.77 Aligned_cols=208 Identities=8% Similarity=-0.027 Sum_probs=164.4
Q ss_pred CchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHH
Q 017532 62 QPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLD 141 (370)
Q Consensus 62 ~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~ 141 (370)
+|.+... +...+.++...|++++|...++++...++.. + ......+.+....|+.++|+.
T Consensus 4 ~~~~~~~-~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------------------~-~~~~~l~~~~~~~~~~~~A~~ 63 (225)
T 2vq2_A 4 ANQVSNI-KTQLAMEYMRGQDYRQATASIEDALKSDPKN------------------E-LAWLVRAEIYQYLKVNDKAQE 63 (225)
T ss_dssp CCHHHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------------H-HHHHHHHHHHHHTTCHHHHHH
T ss_pred CcccHHH-HHHHHHHHHHHhhHHHHHHHHHHHHHhCccc------------------h-HHHHHHHHHHHHcCChHHHHH
Confidence 4554333 3344778888899999998888875443211 0 112223444567788888887
Q ss_pred HHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHh--CCCCCCHHHHHHHHHH
Q 017532 142 RFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSS-KEYNVCFDLMNESIG--RGNGLDPILVSKLGFI 218 (370)
Q Consensus 142 ~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~--~~~~~~~~~~~~lg~~ 218 (370)
.+..++...+.. ..++..+|.++... |++++|+..++++++ ..| .+..++..+|.+
T Consensus 64 ~~~~a~~~~~~~--------------------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~ 122 (225)
T 2vq2_A 64 SFRQALSIKPDS--------------------AEINNNYGWFLCGRLNRPAESMAYFDKALADPTYP-TPYIANLNKGIC 122 (225)
T ss_dssp HHHHHHHHCTTC--------------------HHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCS-CHHHHHHHHHHH
T ss_pred HHHHHHHhCCCC--------------------hHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCc-chHHHHHHHHHH
Confidence 777665432110 13556889999999 999999999999999 555 667899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHH
Q 017532 219 QMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDY-NDIVAINNKA 297 (370)
Q Consensus 219 ~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p-~~~~~~~nla 297 (370)
+...|++++|+.+|+++++..+.. ..++..+|.++...|++++|+..|++++..+| .+..++..++
T Consensus 123 ~~~~~~~~~A~~~~~~~~~~~~~~-------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 189 (225)
T 2vq2_A 123 SAKQGQFGLAEAYLKRSLAAQPQF-------------PPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGW 189 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTC-------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCC-------------chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 999999999999999999764432 45678899999999999999999999999999 9999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 298 LCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 298 ~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
.++...|+.++|..+++.+.+.+|++
T Consensus 190 ~~~~~~~~~~~a~~~~~~~~~~~p~~ 215 (225)
T 2vq2_A 190 KIAKALGNAQAAYEYEAQLQANFPYS 215 (225)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHhcCcHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999986
No 54
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.76 E-value=3.1e-17 Score=140.82 Aligned_cols=129 Identities=7% Similarity=-0.035 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSK----------------LGFIQMQVGDLEGAKKSFNRVEEM 238 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~----------------lg~~~~~~g~~~~A~~~~~~a~~l 238 (370)
..++..|..++..|++++|+..|+++++.+| +++.+++. +|.++...|++++|+..|++++++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNI-DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCH-HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3456788899999999999999999999999 88999998 999999999999999999999976
Q ss_pred hhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC--HHHHHHHHHHH
Q 017532 239 LNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRD--LSDSIKVLENA 316 (370)
Q Consensus 239 ~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~--~~~A~~~l~~a 316 (370)
.|+. ..++.++|.+++..|++++|+..|+++++++|+++.+++++|.++...|+ ...+...+.++
T Consensus 84 ~p~~-------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~ 150 (208)
T 3urz_A 84 APNN-------------VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKL 150 (208)
T ss_dssp CTTC-------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCCC-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 5542 66789999999999999999999999999999999999999988865543 33444455444
Q ss_pred H
Q 017532 317 L 317 (370)
Q Consensus 317 l 317 (370)
+
T Consensus 151 ~ 151 (208)
T 3urz_A 151 S 151 (208)
T ss_dssp -
T ss_pred h
Confidence 3
No 55
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.76 E-value=4e-17 Score=147.65 Aligned_cols=187 Identities=14% Similarity=0.109 Sum_probs=143.6
Q ss_pred cccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC-
Q 017532 131 IKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNG-LD- 208 (370)
Q Consensus 131 ~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-~~- 208 (370)
...|++++|++.+...+...+.. +.. ...+.++.++|.+|...|++++|+..|++++.+.+. .+
T Consensus 48 ~~~g~~~~A~~~~~~al~~~~~~------~~~--------~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~ 113 (292)
T 1qqe_A 48 RLRKELNLAGDSFLKAADYQKKA------GNE--------DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF 113 (292)
T ss_dssp HHTTCTHHHHHHHHHHHHHHHHT------TCH--------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHh------CCH--------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 45699999999988877554321 000 012357789999999999999999999999988761 12
Q ss_pred ---HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHh
Q 017532 209 ---PILVSKLGFIQMQV-GDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIE 284 (370)
Q Consensus 209 ---~~~~~~lg~~~~~~-g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~ 284 (370)
..++..+|.+|... |++++|+.+|++++++.+.. .++.....++.++|.++..+|++++|+.+|+++++
T Consensus 114 ~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~-------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 186 (292)
T 1qqe_A 114 RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD-------QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC-------CChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45788999999996 99999999999999987753 12222256788999999999999999999999999
Q ss_pred hCCCCHH-------HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhH--HHHHHHHHHHH
Q 017532 285 RDYNDIV-------AINNKALCLMYLRDLSDSIKVLENALERVPTVALNE--TLVVNLCSMYE 338 (370)
Q Consensus 285 ~~p~~~~-------~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~--~~~~nl~~lye 338 (370)
..|++.. +++++|.++..+|++++|+..|+++++++|++.... ..+.++...|+
T Consensus 187 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~ 249 (292)
T 1qqe_A 187 SSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVN 249 (292)
T ss_dssp TTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHH
T ss_pred HHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 9987653 689999999999999999999999999999863211 23455666665
No 56
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.76 E-value=3.3e-17 Score=158.45 Aligned_cols=169 Identities=12% Similarity=0.016 Sum_probs=153.3
Q ss_pred HHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchH
Q 017532 174 IFVLNCLIGYHLSSKEY-NVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEV 252 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~-~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p 252 (370)
..+++.+|.++...|+| ++|+..|+++++.+| .+..+++.+|.++...|++++|+.+|++++++ +|
T Consensus 102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~------------~p 168 (474)
T 4abn_A 102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH------------CK 168 (474)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT------------CC
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------------CC
Confidence 46788999999999999 999999999999999 99999999999999999999999999999954 23
Q ss_pred HHHHHHHHhHHHHHHHc---------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh--------CCHHHHHHHHHH
Q 017532 253 EFRNLVSRNKALIYLVG---------KDYVSAVREYEECIERDYNDIVAINNKALCLMYL--------RDLSDSIKVLEN 315 (370)
Q Consensus 253 ~~~~~~~~~~g~~~~~~---------g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~--------g~~~~A~~~l~~ 315 (370)
+ ..++.++|.++... |++++|+..|+++++++|+++.+++++|.++... |++++|++.|++
T Consensus 169 ~--~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~ 246 (474)
T 4abn_A 169 N--KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQ 246 (474)
T ss_dssp C--HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred C--HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHH
Confidence 3 35788899999999 9999999999999999999999999999999999 999999999999
Q ss_pred HHHhCC---CcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCCC
Q 017532 316 ALERVP---TVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDD 362 (370)
Q Consensus 316 al~~~p---~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d~ 362 (370)
+++++| +. ..++++++.+|... +..+++...++...+..|++
T Consensus 247 al~~~p~~~~~---~~~~~~lg~~~~~~--g~~~~A~~~~~~al~l~p~~ 291 (474)
T 4abn_A 247 AEKVDRKASSN---PDLHLNRATLHKYE--ESYGEALEGFSQAAALDPAW 291 (474)
T ss_dssp HHHHCGGGGGC---HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTC
T ss_pred HHHhCCCcccC---HHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCC
Confidence 999999 66 88999999999854 44778888887777777765
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.76 E-value=1.6e-17 Score=155.66 Aligned_cols=282 Identities=12% Similarity=-0.009 Sum_probs=194.8
Q ss_pred HhHHHHHHcCChHHHHHHHHHhhhcccc-CCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCC
Q 017532 33 ASLQDLATRGSWRTIIDNVSRARSQSLL-TQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYP 111 (370)
Q Consensus 33 ~~l~~l~~~g~~~~Ai~~~~~~~~~~~~-~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~ 111 (370)
.....+...|+|++|+..+.+++..... .++......+...+.++..+|++++|...++++..+.+.. +
T Consensus 52 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----------~ 121 (406)
T 3sf4_A 52 QLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL----------N 121 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----------T
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc----------c
Confidence 3556788999999999999987543211 1122223334445788999999999999998885432100 0
Q ss_pred CCCCcccchhHHHHHHHcCcccCC-------------ccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHH
Q 017532 112 NRTGSMVPFSLRWLYAVLPIKLSN-------------RQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLN 178 (370)
Q Consensus 112 ~~~~~~~~~~~r~l~a~~~~~~g~-------------~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (370)
+. .... ......+.+....|+ +.++...+.+.+..+...+....... .......++.
T Consensus 122 ~~--~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~-------~~~~~~~~~~ 191 (406)
T 3sf4_A 122 DK--VGEA-RALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALG-------DRAAQGRAFG 191 (406)
T ss_dssp CH--HHHH-HHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTT-------CHHHHHHHHH
T ss_pred cc--cchH-HHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhcc-------CcHHHHHHHH
Confidence 00 0011 111123344455566 33444444444433333322111000 0111246778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchH
Q 017532 179 CLIGYHLSSKEYNVCFDLMNESIGRGNGLD------PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEV 252 (370)
Q Consensus 179 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~------~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p 252 (370)
.+|.++...|++++|+..++++++..+ .. ..++..+|.++...|++++|+.+|++++++.+.. . ++
T Consensus 192 ~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~-~~ 263 (406)
T 3sf4_A 192 NLGNTHYLLGNFRDAVIAHEQRLLIAK-EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL------K-DR 263 (406)
T ss_dssp HHHHHHHHHTBHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------T-CH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC------c-Cc
Confidence 999999999999999999999998765 22 2378999999999999999999999999887763 2 23
Q ss_pred HHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc---
Q 017532 253 EFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYND------IVAINNKALCLMYLRDLSDSIKVLENALERVPTV--- 323 (370)
Q Consensus 253 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~------~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~--- 323 (370)
.....++.++|.++...|++++|+.+|+++++..+.. ..++.++|.++...|++++|+..++++++..+..
T Consensus 264 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 343 (406)
T 3sf4_A 264 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDK 343 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3337788999999999999999999999999885433 6789999999999999999999999999885432
Q ss_pred chhHHHHHHHHHHHHhccC
Q 017532 324 ALNETLVVNLCSMYELAYV 342 (370)
Q Consensus 324 ~~~~~~~~nl~~lyel~~~ 342 (370)
.....+..+++.+|.....
T Consensus 344 ~~~~~~~~~l~~~~~~~g~ 362 (406)
T 3sf4_A 344 SGELTARLNLSDLQMVLGL 362 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred cchhHHHHHHHHHHHHhhH
Confidence 2235677888888875544
No 58
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.75 E-value=4.2e-17 Score=128.53 Aligned_cols=113 Identities=16% Similarity=0.121 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
+..+.++|..+++.|+|++|+..|+++++.+| .++.++..+|.++..+|++++|+..|++++++.++.
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----------- 80 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF----------- 80 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh-----------
Confidence 45677899999999999999999999999999 999999999999999999999999999999765442
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCL 300 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~ 300 (370)
..++.++|.++..+|++++|++.|+++++++|++..++.+++.|+
T Consensus 81 --~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 81 --IKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred --hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 677899999999999999999999999999999999999998874
No 59
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.74 E-value=1.5e-16 Score=149.20 Aligned_cols=259 Identities=8% Similarity=-0.030 Sum_probs=177.1
Q ss_pred cCCChHhHHHHHHcCChHHHHHHHHHhhhccccC-CchHHHHHHHH-HHHHHhhhcCHHHHH-----------HHhhhcC
Q 017532 28 LVPDLASLQDLATRGSWRTIIDNVSRARSQSLLT-QPHHHLTYLAY-NTLALMKLRRFDEAQ-----------QELDSLE 94 (370)
Q Consensus 28 ~~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~-~P~~~~~~~~~-~~~al~~l~~~~~A~-----------~~~~~~~ 94 (370)
|......-...++++++++|..+.+.+....... ...+...++.+ .....+-++.++.+. ..++.+.
T Consensus 12 v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~ 91 (383)
T 3ulq_A 12 IGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEID 91 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHH
Confidence 3344456678899999999999998875432111 12222333222 111222223333333 3333321
Q ss_pred CCCCCCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHH
Q 017532 95 DFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREI 174 (370)
Q Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (370)
.. +........+....+.+......|++++|+..+...+......- + ....+
T Consensus 92 ~~--------------~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-----~---------~~~~a 143 (383)
T 3ulq_A 92 KK--------------QARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVK-----D---------RIEKA 143 (383)
T ss_dssp HH--------------THHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCC-----C---------HHHHH
T ss_pred hc--------------CCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCC-----C---------HHHHH
Confidence 10 00000111112223345555778999999988887764322110 0 00124
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCc
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNG------LDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGL 248 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~------~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~ 248 (370)
.+++.+|.++...|++++|+..++++++..+. ....++..+|.++...|++++|+.+|++++++.+..
T Consensus 144 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------ 217 (383)
T 3ulq_A 144 EFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE------ 217 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc------
Confidence 67789999999999999999999999987541 123577899999999999999999999999987763
Q ss_pred cchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHh-----hC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 017532 249 LSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIE-----RD-YNDIVAINNKALCLMYLRDLSDSIKVLENALERVP 321 (370)
Q Consensus 249 ~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~-----~~-p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p 321 (370)
...+.. ..++.++|.++...|++++|+.+|+++++ .+ |..+.+++++|.++...|++++|+..++++++..+
T Consensus 218 ~~~~~~-~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 295 (383)
T 3ulq_A 218 KQPQLM-GRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ 295 (383)
T ss_dssp TCHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CChHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 223333 78899999999999999999999999999 46 77889999999999999999999999999998743
No 60
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.74 E-value=1.2e-17 Score=168.49 Aligned_cols=146 Identities=12% Similarity=-0.006 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
.+++.+|.++...|++++|+..|+++++.+| ++..+++.+|.++...|++++|+..|++++++.++.
T Consensus 434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~------------ 500 (681)
T 2pzi_A 434 ELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGE------------ 500 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC------------
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------
Confidence 5677899999999999999999999999999 999999999999999999999999999999875553
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHH
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLC 334 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~ 334 (370)
..++.++|.++...|++++ +..|+++++++|++..+++++|.++...|++++|++.|+++++++|++ ..++++++
T Consensus 501 -~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~---~~a~~~~~ 575 (681)
T 2pzi_A 501 -LAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHF---TTARLTSA 575 (681)
T ss_dssp -SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTH---HHHHHHHH
T ss_pred -hHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCccc---HHHHHHHH
Confidence 5678899999999999999 999999999999999999999999999999999999999999999987 78889999
Q ss_pred HHHH
Q 017532 335 SMYE 338 (370)
Q Consensus 335 ~lye 338 (370)
.+|.
T Consensus 576 ~~~~ 579 (681)
T 2pzi_A 576 VTLL 579 (681)
T ss_dssp HHTC
T ss_pred HHHH
Confidence 9874
No 61
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.73 E-value=2e-16 Score=140.96 Aligned_cols=232 Identities=13% Similarity=0.077 Sum_probs=178.8
Q ss_pred hHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhh----hcCHHHHHHHhhhcCCCCCCCCcccccC
Q 017532 32 LASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMK----LRRFDEAQQELDSLEDFNSSGYQYETYP 107 (370)
Q Consensus 32 ~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~----l~~~~~A~~~~~~~~~l~~~~~~~~~~~ 107 (370)
......+...|++++|+..+.++.. |.+...++. .+..+.. .+++++|...+++...++.+.
T Consensus 10 ~~lg~~~~~~~~~~~A~~~~~~a~~------~~~~~a~~~-lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~------- 75 (273)
T 1ouv_A 10 VGLGAKSYKEKDFTQAKKYFEKACD------LKENSGCFN-LGVLYYQGQGVEKNLKKAASFYAKACDLNYSN------- 75 (273)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH------TTCHHHHHH-HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH-------
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHH------CCCHHHHHH-HHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHH-------
Confidence 4456677889999999999999865 222233333 4777888 999999999999885543111
Q ss_pred CCCCCCCCcccchhHHHHHHHcCcc----cCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHH
Q 017532 108 HIYPNRTGSMVPFSLRWLYAVLPIK----LSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGY 183 (370)
Q Consensus 108 ~~~~~~~~~~~~~~~r~l~a~~~~~----~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 183 (370)
.+ ...+.+... .++.++|+..+...+.. . ...+++.+|.+
T Consensus 76 -------------a~-~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-------~---------------~~~a~~~lg~~ 119 (273)
T 1ouv_A 76 -------------GC-HLLGNLYYSGQGVSQNTNKALQYYSKACDL-------K---------------YAEGCASLGGI 119 (273)
T ss_dssp -------------HH-HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T---------------CHHHHHHHHHH
T ss_pred -------------HH-HHHHHHHhCCCCcccCHHHHHHHHHHHHHc-------C---------------CccHHHHHHHH
Confidence 11 112333344 78888888777665431 0 12456789999
Q ss_pred HHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhcCCccCCccchHHHH
Q 017532 184 HLS----SKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQ----VGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFR 255 (370)
Q Consensus 184 ~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~ 255 (370)
+.. .+++++|+.+|+++++.+ ++.+++.+|.++.. .+++++|+.+|+++++. .+
T Consensus 120 ~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-----------~~---- 181 (273)
T 1ouv_A 120 YHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-----------KD---- 181 (273)
T ss_dssp HHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----------TC----
T ss_pred HHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-----------CC----
Confidence 999 999999999999999865 47888999999999 99999999999999853 12
Q ss_pred HHHHHhHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCcchhH
Q 017532 256 NLVSRNKALIYLV----GKDYVSAVREYEECIERDYNDIVAINNKALCLMY----LRDLSDSIKVLENALERVPTVALNE 327 (370)
Q Consensus 256 ~~~~~~~g~~~~~----~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~----~g~~~~A~~~l~~al~~~p~~~~~~ 327 (370)
..++.++|.++.. .+++++|+.+|+++++.+| +.+++++|.++.. .+++++|++.|+++++.+|+
T Consensus 182 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~----- 254 (273)
T 1ouv_A 182 SPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK----- 254 (273)
T ss_dssp HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH-----
T ss_pred HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCH-----
Confidence 4567789999999 9999999999999999866 8899999999999 99999999999999999884
Q ss_pred HHHHHHHHHHH
Q 017532 328 TLVVNLCSMYE 338 (370)
Q Consensus 328 ~~~~nl~~lye 338 (370)
....++..+..
T Consensus 255 ~a~~~l~~~~~ 265 (273)
T 1ouv_A 255 GACDILKQLKI 265 (273)
T ss_dssp HHHHHHHTCCC
T ss_pred HHHHHHHHHHH
Confidence 45555555543
No 62
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.73 E-value=8.8e-16 Score=127.26 Aligned_cols=132 Identities=12% Similarity=0.007 Sum_probs=122.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHH
Q 017532 178 NCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNL 257 (370)
Q Consensus 178 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~ 257 (370)
+.+|.++...|++++|+..++++++..| .+..++..+|.++...|++++|+.+|+++++..+.. ..
T Consensus 46 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-------------~~ 111 (186)
T 3as5_A 46 LHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN-------------FN 111 (186)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-------------HH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh-------------HH
Confidence 4667788889999999999999999999 999999999999999999999999999999764432 45
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 258 VSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 258 ~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
++..+|.++...|++++|+..|++++..+|.++.++.++|.++...|++++|+..++++++.+|++
T Consensus 112 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 177 (186)
T 3as5_A 112 VRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA 177 (186)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 678899999999999999999999999999999999999999999999999999999999998876
No 63
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.73 E-value=8e-17 Score=142.88 Aligned_cols=228 Identities=11% Similarity=-0.004 Sum_probs=175.9
Q ss_pred HcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCcccc
Q 017532 40 TRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVP 119 (370)
Q Consensus 40 ~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 119 (370)
..|+|++|+..+++++......+|.+ ...+...+.++...|++++|...++++..+++.. +
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------------------~ 77 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDER-AQLLYERGVLYDSLGLRALARNDFSQALAIRPDM------------------P 77 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC------------------H
T ss_pred ccchHHHHHHHHHHHHhcccccCchh-HHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCc------------------H
Confidence 35899999999999876532223443 3344455889999999999999999986554211 1
Q ss_pred hhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 017532 120 FSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNE 199 (370)
Q Consensus 120 ~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 199 (370)
......+.+....|++++|+..+..++...+.. ..+++.+|.++...|++++|+..+++
T Consensus 78 -~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--------------------~~~~~~la~~~~~~g~~~~A~~~~~~ 136 (275)
T 1xnf_A 78 -EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY--------------------NYAHLNRGIALYYGGRDKLAQDDLLA 136 (275)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------------------THHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHccCHHHHHHHHHHHHhcCccc--------------------cHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 112234555677899999998888776432211 24667899999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHH
Q 017532 200 SIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREY 279 (370)
Q Consensus 200 ~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~ 279 (370)
+++..| .+......++ +....|++++|+..|++++...+.. .. ....+.++...++.++|+..+
T Consensus 137 a~~~~~-~~~~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~~~~-------------~~-~~~~~~~~~~~~~~~~a~~~~ 200 (275)
T 1xnf_A 137 FYQDDP-NDPFRSLWLY-LAEQKLDEKQAKEVLKQHFEKSDKE-------------QW-GWNIVEFYLGNISEQTLMERL 200 (275)
T ss_dssp HHHHCT-TCHHHHHHHH-HHHHHHCHHHHHHHHHHHHHHSCCC-------------ST-HHHHHHHHTTSSCHHHHHHHH
T ss_pred HHHhCC-CChHHHHHHH-HHHHhcCHHHHHHHHHHHHhcCCcc-------------hH-HHHHHHHHHHhcCHHHHHHHH
Confidence 999999 8876666555 4466799999999999999765442 11 133677888999999999999
Q ss_pred HHHHhhCCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 280 EECIERDYN----DIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 280 ~~~l~~~p~----~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
++++..+|. ++.++.++|.++...|++++|+..|+++++.+|++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 248 (275)
T 1xnf_A 201 KADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 248 (275)
T ss_dssp HHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred HHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh
Confidence 999988764 37899999999999999999999999999999975
No 64
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=1.5e-16 Score=143.46 Aligned_cols=231 Identities=13% Similarity=0.082 Sum_probs=166.8
Q ss_pred CchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHH
Q 017532 62 QPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLD 141 (370)
Q Consensus 62 ~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~ 141 (370)
+|.. ...+...+.++...|++++|...++++..+... . .+......+ ......+.+....|++++|+.
T Consensus 23 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~-----~-----~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~ 90 (311)
T 3nf1_A 23 IPAR-LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEK-----T-----SGHDHPDVA-TMLNILALVYRDQNKYKDAAN 90 (311)
T ss_dssp SCHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----H-----HCSSSHHHH-HHHHHHHHHHHHTTCHHHHHH
T ss_pred chHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-----H-----cCCCCHHHH-HHHHHHHHHHHHCCCHHHHHH
Confidence 4543 333344577888889999999888887542100 0 000000011 112234555577899999999
Q ss_pred HHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CCCCHHHHH
Q 017532 142 RFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRG--------NGLDPILVS 213 (370)
Q Consensus 142 ~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--------~~~~~~~~~ 213 (370)
.+...+........... .....++..+|.++...|++++|+..++++++.. + ....++.
T Consensus 91 ~~~~al~~~~~~~~~~~------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~~ 157 (311)
T 3nf1_A 91 LLNDALAIREKTLGKDH------------PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHP-DVAKQLN 157 (311)
T ss_dssp HHHHHHHHHHHHHCTTC------------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH-HHHHHHH
T ss_pred HHHHHHHHHHHHhCCCC------------hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCCh-HHHHHHH
Confidence 98888766544321110 0123567899999999999999999999999874 3 4456789
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh--------
Q 017532 214 KLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIER-------- 285 (370)
Q Consensus 214 ~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~-------- 285 (370)
.+|.++...|++++|+.+|++++++...... ...|.. ..++..+|.++...|++++|+..|+++++.
T Consensus 158 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 232 (311)
T 3nf1_A 158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLG----PDDPNV-AKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGS 232 (311)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC----TTCHHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC----CCCHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999987554211 225555 778899999999999999999999999974
Q ss_pred -----------------------------------------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 286 -----------------------------------------DYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 286 -----------------------------------------~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
+|....++.++|.++...|++++|+++|++++++.|+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 233 VDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -----CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred CCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 3556678888999999999999999999998888764
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.73 E-value=2.6e-16 Score=147.49 Aligned_cols=253 Identities=9% Similarity=-0.015 Sum_probs=188.0
Q ss_pred hHHHHHHcCChHHHHHHHHHhhhcccc-CCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCC
Q 017532 34 SLQDLATRGSWRTIIDNVSRARSQSLL-TQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPN 112 (370)
Q Consensus 34 ~l~~l~~~g~~~~Ai~~~~~~~~~~~~-~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~ 112 (370)
....+...|+|++|+..+.++...... .++......+...+.++..+|++++|...+.+...+.... ++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~----------~~ 178 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH----------EA 178 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC----------ST
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC----------cc
Confidence 455678899999999999998654221 1222223334445888999999999999999885432100 00
Q ss_pred CCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHH
Q 017532 113 RTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNV 192 (370)
Q Consensus 113 ~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 192 (370)
.. ...... ....+.+....|++++|+..+...+...+..-. ......+++++|.++...|++++
T Consensus 179 ~~-~~~~~~-~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--------------~~~~~~~~~~lg~~y~~~g~~~~ 242 (383)
T 3ulq_A 179 YN-IRLLQC-HSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ--------------PQLMGRTLYNIGLCKNSQSQYED 242 (383)
T ss_dssp TH-HHHHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ch-HHHHHH-HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC--------------hHHHHHHHHHHHHHHHHCCCHHH
Confidence 00 001111 222455567889999999999888766553310 01124678899999999999999
Q ss_pred HHHHHHHHHh-----CC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHH
Q 017532 193 CFDLMNESIG-----RG-NGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIY 266 (370)
Q Consensus 193 A~~~~~~~l~-----~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~ 266 (370)
|+..++++++ .+ | ....++..+|.++...|++++|+.+|++++++.+. ..++.. ...+..+|.++
T Consensus 243 A~~~~~~al~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-------~~~~~~-~~~~~~l~~~~ 313 (383)
T 3ulq_A 243 AIPYFKRAIAVFEESNILP-SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQK-------AGDVIY-LSEFEFLKSLY 313 (383)
T ss_dssp HHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-------HTCHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccch-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-------cCCHHH-HHHHHHHHHHH
Confidence 9999999998 45 5 66788999999999999999999999999988765 234544 23366799999
Q ss_pred HHcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 267 LVGKD---YVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 267 ~~~g~---~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
...|+ +.+|+..+++. ...|....++.++|.++...|++++|+.+++++++...+
T Consensus 314 ~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 314 LSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp TSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred hCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 99999 88888888887 334555678999999999999999999999999987654
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.72 E-value=1e-16 Score=145.44 Aligned_cols=263 Identities=11% Similarity=-0.010 Sum_probs=179.2
Q ss_pred HhHHHHHHcCChHHHHHHHHHhhhcccc-CCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCC
Q 017532 33 ASLQDLATRGSWRTIIDNVSRARSQSLL-TQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYP 111 (370)
Q Consensus 33 ~~l~~l~~~g~~~~Ai~~~~~~~~~~~~-~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~ 111 (370)
.....+...|+|++|+..+.++...... .++......+...+.++...|++++|...+.+...+.+.. +
T Consensus 48 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----------~ 117 (338)
T 3ro2_A 48 QLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL----------N 117 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----------T
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh----------c
Confidence 4566778899999999999987543211 1122223334445778999999999999998875432100 0
Q ss_pred CCCCcccchhHHHHHHHcCcccCC-------------ccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHH
Q 017532 112 NRTGSMVPFSLRWLYAVLPIKLSN-------------RQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLN 178 (370)
Q Consensus 112 ~~~~~~~~~~~r~l~a~~~~~~g~-------------~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (370)
+. ...... ....+.+....|+ +.++...+.+.+..+...+....... . ......++.
T Consensus 118 ~~--~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~--~-----~~~~~~~~~ 187 (338)
T 3ro2_A 118 DK--VGEARA-LYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALG--D-----RAAQGRAFG 187 (338)
T ss_dssp CH--HHHHHH-HHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHT--C-----HHHHHHHHH
T ss_pred Cc--hHHHHH-HHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcC--C-----HHHHHHHHH
Confidence 00 001111 1123334455566 33444444444433333322111000 0 111246778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCC-C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 179 CLIGYHLSSKEYNVCFDLMNESIGRGNG-L----DPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 179 ~la~~~~~~g~~~~A~~~~~~~l~~~~~-~----~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
.+|.++...|++++|+..++++++..+. . ...++..+|.++...|++++|+.+|++++.+.+.. .++.
T Consensus 188 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~ 260 (338)
T 3ro2_A 188 NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL-------KDRA 260 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-------TCHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-------cchh
Confidence 9999999999999999999999877551 1 12478999999999999999999999999887763 2333
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERDYND------IVAINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~------~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
....++..+|.++...|++++|+..|++++...+.. ..++.++|.++...|++++|+.++++++++.++
T Consensus 261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 261 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 337788999999999999999999999999875432 468899999999999999999999999998775
No 67
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.72 E-value=1.5e-16 Score=141.08 Aligned_cols=188 Identities=13% Similarity=0.053 Sum_probs=148.1
Q ss_pred HHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 017532 126 YAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGN 205 (370)
Q Consensus 126 ~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 205 (370)
.+......|++++|+..+..++...+... ....+++.+|.++...|+|++|+..|+++++..|
T Consensus 21 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----------------~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p 83 (261)
T 3qky_A 21 RAMEFYNQGKYDRAIEYFKAVFTYGRTHE-----------------WAADAQFYLARAYYQNKEYLLAASEYERFIQIYQ 83 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHGGGCSCST-----------------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCCCc-----------------chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCC
Confidence 34445778999999988887764322110 0125678999999999999999999999999988
Q ss_pred CCC---HHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHhhcCCccCCccchHHH----------HHHHHHhHHH
Q 017532 206 GLD---PILVSKLGFIQMQ--------VGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF----------RNLVSRNKAL 264 (370)
Q Consensus 206 ~~~---~~~~~~lg~~~~~--------~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~----------~~~~~~~~g~ 264 (370)
.+ +.+++.+|.++.. .|++++|+..|+++++..|++. ..... ....++.+|.
T Consensus 84 -~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~------~~~~a~~~~~~~~~~~~~~~~~la~ 156 (261)
T 3qky_A 84 -IDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE------LVDDATQKIRELRAKLARKQYEAAR 156 (261)
T ss_dssp -TCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT------THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 5688999999999 9999999999999998876641 11100 0222378999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHh----------CCHHHHHHHHHHHHHhCCCcchhHHHHH
Q 017532 265 IYLVGKDYVSAVREYEECIERDYN---DIVAINNKALCLMYL----------RDLSDSIKVLENALERVPTVALNETLVV 331 (370)
Q Consensus 265 ~~~~~g~~~eA~~~~~~~l~~~p~---~~~~~~nla~~~~~~----------g~~~~A~~~l~~al~~~p~~~~~~~~~~ 331 (370)
+++..|++++|+..|+++++.+|+ .+.+++++|.++..+ |++++|+..|+++++.+|++........
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~ 236 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEE 236 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 999999999999999999999998 567999999999977 9999999999999999998744344444
Q ss_pred HHHHHH
Q 017532 332 NLCSMY 337 (370)
Q Consensus 332 nl~~ly 337 (370)
.+..++
T Consensus 237 ~l~~~~ 242 (261)
T 3qky_A 237 LYTRAR 242 (261)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 68
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.72 E-value=4.9e-16 Score=137.78 Aligned_cols=171 Identities=16% Similarity=0.108 Sum_probs=142.8
Q ss_pred cccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------
Q 017532 131 IKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRG------ 204 (370)
Q Consensus 131 ~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~------ 204 (370)
...|++++|+..+.+.+..+......... ....+++.+|.++...|++++|+..+++++...
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 79 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHP------------DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGK 79 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSH------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCH------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCC
Confidence 56799999999999988777655421110 123677899999999999999999999999763
Q ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHH
Q 017532 205 --NGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEEC 282 (370)
Q Consensus 205 --~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~ 282 (370)
+ ....++..+|.++...|++++|+.+|++++++..... ...+|.. ..++.++|.++...|++++|+.+|+++
T Consensus 80 ~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a 153 (283)
T 3edt_B 80 DHP-AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL----GKFHPDV-AKQLNNLALLCQNQGKAEEVEYYYRRA 153 (283)
T ss_dssp TCH-HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH----CTTCHHH-HHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred cch-HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHc----CCCChHH-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3 4557889999999999999999999999998754321 0224666 788999999999999999999999999
Q ss_pred Hhh--------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 283 IER--------DYNDIVAINNKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 283 l~~--------~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
++. +|....++.++|.++...|++++|+..++++++.
T Consensus 154 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 154 LEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 998 6777889999999999999999999999999987
No 69
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.71 E-value=9.1e-16 Score=120.09 Aligned_cols=134 Identities=18% Similarity=0.163 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
.+++.+|.++...|++++|+..++++++..| .+...+..+|.++...|++++|+.+|++++...+..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------------ 68 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS------------ 68 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------------
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc------------
Confidence 3567889999999999999999999999999 889999999999999999999999999999764331
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
...+..+|.++...|++++|+..|++++..+|.+..++.++|.++...|++++|+..+++++..+|+
T Consensus 69 -~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 69 -AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp -HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred -hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 4567789999999999999999999999999999999999999999999999999999999999885
No 70
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.71 E-value=1.4e-16 Score=150.03 Aligned_cols=262 Identities=11% Similarity=0.024 Sum_probs=184.1
Q ss_pred HhHHHHHHcCChHHHHHHHHHhhhcccc--CCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCC
Q 017532 33 ASLQDLATRGSWRTIIDNVSRARSQSLL--TQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIY 110 (370)
Q Consensus 33 ~~l~~l~~~g~~~~Ai~~~~~~~~~~~~--~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~ 110 (370)
.....+...|+|++|+..+.+++..... ..|. ....+...+.++...|++++|...+.++..+.. ..
T Consensus 91 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~------~~---- 159 (411)
T 4a1s_A 91 QLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG-EAKSSGNLGNTLKVMGRFDEAAICCERHLTLAR------QL---- 159 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------HH----
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH------Hh----
Confidence 3456677899999999999997654211 1233 233344457889999999999999988743311 00
Q ss_pred CCCCCcccchhHHHHHHHcCcccCC----------ccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHH
Q 017532 111 PNRTGSMVPFSLRWLYAVLPIKLSN----------RQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCL 180 (370)
Q Consensus 111 ~~~~~~~~~~~~r~l~a~~~~~~g~----------~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 180 (370)
.+.. ... ......+.+....|+ ..++...+.+.+..+.+.+....... . ......++..+
T Consensus 160 ~~~~--~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~--~-----~~~~~~~~~~l 229 (411)
T 4a1s_A 160 GDRL--SEG-RALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLG--D-----RGAQGRACGNL 229 (411)
T ss_dssp TCHH--HHH-HHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT--C-----HHHHHHHHHHH
T ss_pred hchH--HHH-HHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcC--C-----HHHHHHHHHHH
Confidence 0000 000 111123444455666 44444445554444443332211000 0 01124677899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 181 IGYHLSSKEYNVCFDLMNESIGRGNGLD------PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 181 a~~~~~~g~~~~A~~~~~~~l~~~~~~~------~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
|.++...|++++|+.+++++++..+ .. ..++..+|.++...|++++|+.+|++++++.+.. .++..
T Consensus 230 a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~ 301 (411)
T 4a1s_A 230 GNTYYLLGDFQAAIEHHQERLRIAR-EFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL-------GEREV 301 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT-------TCHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc-------CCHHH
Confidence 9999999999999999999998766 22 2378899999999999999999999999887763 22223
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYN------DIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~------~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
...++..+|.++...|++++|+.+|+++++..+. ...++.++|.++...|++++|+.++++++++.+..
T Consensus 302 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 302 EAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXX 376 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc
Confidence 3778899999999999999999999999988533 34689999999999999999999999999998764
No 71
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.71 E-value=1e-16 Score=130.24 Aligned_cols=133 Identities=17% Similarity=0.123 Sum_probs=112.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 017532 214 KLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAI 293 (370)
Q Consensus 214 ~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~ 293 (370)
.||.++...|++++|++.|++++ ..+|+. ...++.+|.+|+..|++++|+++|+++++++|+++.++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~------------~~~p~~-~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~ 68 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGST------------PSPRQK-SIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAH 68 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHS------------CSHHHH-HTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhc------------ccCccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 47889999999999999999998 556766 77788999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCCCC
Q 017532 294 NNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDDF 363 (370)
Q Consensus 294 ~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d~~ 363 (370)
+++|.++...|++++|+..|+++++++|++ ..++++++.+|...... .++...++++..+..|++.
T Consensus 69 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~-~~aa~~~~~~al~l~P~~~ 134 (150)
T 4ga2_A 69 RFLGLLYELEENTDKAVECYRRSVELNPTQ---KDLVLKIAELLCKNDVT-DGRAKYWVERAAKLFPGSP 134 (150)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHCSS-SSHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHhCcCCH
Confidence 999999999999999999999999999998 88999999998754432 2455556666667777653
No 72
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.71 E-value=2e-15 Score=133.83 Aligned_cols=171 Identities=16% Similarity=0.038 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
.+++.+|.++...|++++|+..|+++++.+| .++.++..+|.++...|++++|+.+|++++++.+..
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------------ 110 (275)
T 1xnf_A 44 QLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY------------ 110 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccc------------
Confidence 5667899999999999999999999999999 899999999999999999999999999999765442
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcch---------
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVAL--------- 325 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~--------- 325 (370)
..++..+|.+++..|++++|+..|+++++.+|++.......+.+ ...|++++|+..+++++...|....
T Consensus 111 -~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (275)
T 1xnf_A 111 -NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYL 188 (275)
T ss_dssp -THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHT
T ss_pred -cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 56678899999999999999999999999999998776666654 6668999999999888887775411
Q ss_pred -------------------------hHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCCC
Q 017532 326 -------------------------NETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDD 362 (370)
Q Consensus 326 -------------------------~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d~ 362 (370)
...++++++.+|... +..+.....++......|++
T Consensus 189 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~ 248 (275)
T 1xnf_A 189 GNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSL--GDLDSATALFKLAVANNVHN 248 (275)
T ss_dssp TSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTCCTT
T ss_pred HhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHc--CCHHHHHHHHHHHHhCCchh
Confidence 035667777777643 44667777777666666654
No 73
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.71 E-value=1.2e-16 Score=129.61 Aligned_cols=116 Identities=16% Similarity=0.039 Sum_probs=107.4
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHH
Q 017532 194 FDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYV 273 (370)
Q Consensus 194 ~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~ 273 (370)
-..|++++..+| .+...++.+|.++...|++++|+..|++++.+.+.+ ..++.++|.++...|+++
T Consensus 7 ~~~~~~al~~~p-~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-------------~~~~~~lg~~~~~~g~~~ 72 (148)
T 2vgx_A 7 GGTIAMLNEISS-DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD-------------SRFFLGLGACRQAMGQYD 72 (148)
T ss_dssp CCSHHHHTTCCH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------HHHHHHHHHHHHHTTCHH
T ss_pred hhhHHHHHcCCH-hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc-------------HHHHHHHHHHHHHHhhHH
Confidence 456888999999 899999999999999999999999999999765442 567889999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 274 SAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 274 eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
+|+..|++++.++|+++.+++++|.++...|++++|++.|+++++.+|+.
T Consensus 73 ~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 122 (148)
T 2vgx_A 73 LAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANX 122 (148)
T ss_dssp HHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 99999999999999999999999999999999999999999999999875
No 74
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.70 E-value=7.6e-16 Score=144.17 Aligned_cols=193 Identities=10% Similarity=0.006 Sum_probs=150.6
Q ss_pred HHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 017532 125 LYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRG 204 (370)
Q Consensus 125 l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 204 (370)
..+......|+.++|+..+...+......- + ....+.+++.+|.++...|+++.|+..+++++...
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-----~---------~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~ 171 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVS-----D---------DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIY 171 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCC-----C---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCC-----C---------hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 344445678999999888877654332110 0 01124678899999999999999999999999865
Q ss_pred CC--C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHH
Q 017532 205 NG--L----DPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVRE 278 (370)
Q Consensus 205 ~~--~----~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~ 278 (370)
+. . ...++..+|.++...|++++|+.+|++++++.+.. .++.....++.++|.++...|++++|+.+
T Consensus 172 ~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~-------~~~~~~~~~~~~lg~~y~~~~~~~~A~~~ 244 (378)
T 3q15_A 172 QNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI-------QNDRFIAISLLNIANSYDRSGDDQMAVEH 244 (378)
T ss_dssp HTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 41 1 23567899999999999999999999999987653 23333378899999999999999999999
Q ss_pred HHHHHh-----hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc--chhHHHHHHHHHHHH
Q 017532 279 YEECIE-----RDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV--ALNETLVVNLCSMYE 338 (370)
Q Consensus 279 ~~~~l~-----~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~--~~~~~~~~nl~~lye 338 (370)
|+++++ .+|....+++++|.++...|++++|+.+++++++..+.. ......+..+..+|.
T Consensus 245 ~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~ 311 (378)
T 3q15_A 245 FQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYK 311 (378)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999 788889999999999999999999999999999986542 111334455666664
No 75
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.70 E-value=3.2e-16 Score=150.50 Aligned_cols=259 Identities=11% Similarity=0.017 Sum_probs=167.3
Q ss_pred cCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHH---HhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCcc
Q 017532 41 RGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLA---LMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSM 117 (370)
Q Consensus 41 ~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~a---l~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 117 (370)
.++|++|+..+++++.. +|.+...+..+ +.+ +...+++++|+..++++..+++....
T Consensus 151 ~~~y~~A~~~~~kal~~----~p~~~~~~~~~-~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~--------------- 210 (472)
T 4g1t_A 151 GNQNERAKVCFEKALEK----KPKNPEFTSGL-AIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY--------------- 210 (472)
T ss_dssp TTHHHHHHHHHHHHHHH----STTCHHHHHHH-HHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH---------------
T ss_pred cccHHHHHHHHHHHHHh----CCCCHHHHHHH-HHHHHHhcCchHHHHHHHHHHHHhhcCCcchH---------------
Confidence 45688888888886543 46544333332 222 44556677777777776554421110
Q ss_pred cchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 017532 118 VPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLM 197 (370)
Q Consensus 118 ~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 197 (370)
+-..+......+....|+..+|+..+...+...+. ...++..+|.++...|++++|+..+
T Consensus 211 ~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~--------------------~~~~~~~lg~~~~~~~~~~~A~~~~ 270 (472)
T 4g1t_A 211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG--------------------VTDVLRSAAKFYRRKDEPDKAIELL 270 (472)
T ss_dssp HHHHHHHHHHHCC------CHHHHHHHHHHHHCSS--------------------CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc--------------------HHHHHHHHHHHHHHcCchHHHHHHH
Confidence 00111112233334456666666655544321111 0245678999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHc-------------------CCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHH
Q 017532 198 NESIGRGNGLDPILVSKLGFIQMQV-------------------GDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLV 258 (370)
Q Consensus 198 ~~~l~~~~~~~~~~~~~lg~~~~~~-------------------g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~ 258 (370)
+++++..| .+..++..+|.+|... +.+++|+.+|+++.++.+.. ..+
T Consensus 271 ~~al~~~p-~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-------------~~~ 336 (472)
T 4g1t_A 271 KKALEYIP-NNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNL-------------FRV 336 (472)
T ss_dssp HHHHHHST-TCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTT-------------CCC
T ss_pred HHHHHhCC-ChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCch-------------hhh
Confidence 99999999 9999999999988653 34678888888888764442 445
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HHHHHHHH-HHHhCCHHHHHHHHHHHHHhCCCcch---------
Q 017532 259 SRNKALIYLVGKDYVSAVREYEECIERDYNDIV---AINNKALC-LMYLRDLSDSIKVLENALERVPTVAL--------- 325 (370)
Q Consensus 259 ~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~---~~~nla~~-~~~~g~~~~A~~~l~~al~~~p~~~~--------- 325 (370)
+..+|.++...|++++|+++|+++++.+|++.. +++++|.. +...|++++|+..|+++++++|+...
T Consensus 337 ~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~ 416 (472)
T 4g1t_A 337 CSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQ 416 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred hhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 677999999999999999999999999887653 46677754 45789999999999999988776421
Q ss_pred ------------hHHHHHHHHHHHHhccCCchhhHHHHHHHH
Q 017532 326 ------------NETLVVNLCSMYELAYVNHSDIKRTLSSWI 355 (370)
Q Consensus 326 ------------~~~~~~nl~~lyel~~~~~~~~~~~ll~~~ 355 (370)
...++.+|+.+|....+ .+++.+..++.
T Consensus 417 ~~~~~~l~~~p~~~~~~~~LG~~~~~~g~--~~~A~~~y~kA 456 (472)
T 4g1t_A 417 KIAKMRLSKNGADSEALHVLAFLQELNEK--MQQADEDSERG 456 (472)
T ss_dssp HHHHHHHHHCC-CTTHHHHHHHHHHHHHH--CC---------
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHH
Confidence 13567788888875433 44444444433
No 76
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.70 E-value=4.1e-15 Score=132.46 Aligned_cols=230 Identities=13% Similarity=0.046 Sum_probs=177.0
Q ss_pred chHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCcccchhHHHHHHHcCcc----cCCccc
Q 017532 63 PHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIK----LSNRQV 138 (370)
Q Consensus 63 P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~----~g~~~~ 138 (370)
|.+...++. .+..+...|++++|...+++......+ .. ....+.+... .|+.++
T Consensus 3 ~~~~~a~~~-lg~~~~~~~~~~~A~~~~~~a~~~~~~--------------------~a-~~~lg~~~~~g~~~~~~~~~ 60 (273)
T 1ouv_A 3 EQDPKELVG-LGAKSYKEKDFTQAKKYFEKACDLKEN--------------------SG-CFNLGVLYYQGQGVEKNLKK 60 (273)
T ss_dssp --CHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHTTCH--------------------HH-HHHHHHHHHHTSSSCCCHHH
T ss_pred CCChHHHHH-HHHHHHhCCCHHHHHHHHHHHHHCCCH--------------------HH-HHHHHHHHHcCCCcCCCHHH
Confidence 443334433 478889999999999999988542211 11 1122333344 788888
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 017532 139 GLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLS----SKEYNVCFDLMNESIGRGNGLDPILVSK 214 (370)
Q Consensus 139 al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~~ 214 (370)
|+..+...+... ...+++.+|.++.. .+++++|+..|+++++. .++.+++.
T Consensus 61 A~~~~~~a~~~~----------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~---~~~~a~~~ 115 (273)
T 1ouv_A 61 AASFYAKACDLN----------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL---KYAEGCAS 115 (273)
T ss_dssp HHHHHHHHHHTT----------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---TCHHHHHH
T ss_pred HHHHHHHHHHCC----------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc---CCccHHHH
Confidence 888777654321 12466789999999 99999999999999986 46889999
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHH----cCCHHHHHHHHHHHHhhC
Q 017532 215 LGFIQMQ----VGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLV----GKDYVSAVREYEECIERD 286 (370)
Q Consensus 215 lg~~~~~----~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~----~g~~~eA~~~~~~~l~~~ 286 (370)
+|.++.. .|++++|+.+|+++++.. + ..++.++|.++.. .+++++|+.+|+++++.
T Consensus 116 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-----------~----~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~- 179 (273)
T 1ouv_A 116 LGGIYHDGKVVTRDFKKAVEYFTKACDLN-----------D----GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL- 179 (273)
T ss_dssp HHHHHHHCSSSCCCHHHHHHHHHHHHHTT-----------C----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-
T ss_pred HHHHHHcCCCcccCHHHHHHHHHHHHhcC-----------c----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-
Confidence 9999999 999999999999999631 1 4567889999999 99999999999999987
Q ss_pred CCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhcc--CCchhhHHHHHHHHhhhCC
Q 017532 287 YNDIVAINNKALCLMY----LRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAY--VNHSDIKRTLSSWIGRVAP 360 (370)
Q Consensus 287 p~~~~~~~nla~~~~~----~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~--~~~~~~~~~ll~~~~~~~~ 360 (370)
.++.+++++|.++.. .+++++|++.|+++++.+| ....++++.+|.... .+..++...++++.....|
T Consensus 180 -~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-----~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 180 -KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-----GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp -TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred -CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC-----HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 468999999999999 9999999999999999876 568899999998411 3345667777766655554
Q ss_pred C
Q 017532 361 D 361 (370)
Q Consensus 361 d 361 (370)
+
T Consensus 254 ~ 254 (273)
T 1ouv_A 254 K 254 (273)
T ss_dssp H
T ss_pred H
Confidence 4
No 77
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.69 E-value=2.4e-15 Score=135.49 Aligned_cols=215 Identities=16% Similarity=0.122 Sum_probs=165.9
Q ss_pred HHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-
Q 017532 126 YAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRG- 204 (370)
Q Consensus 126 ~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~- 204 (370)
.+.+....|++++|+..+..++..+........ .....++..+|.++...|++++|+..+++++...
T Consensus 33 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 33 LVIQYASQGRYEVAVPLCKQALEDLEKTSGHDH------------PDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 100 (311)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSS------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCC------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 345557889999999999888765544320000 0113567789999999999999999999999863
Q ss_pred -------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHH
Q 017532 205 -------NGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVR 277 (370)
Q Consensus 205 -------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~ 277 (370)
+ ....++..+|.++...|++++|+.+|++++++...... ...|.. ..++.++|.++...|++++|+.
T Consensus 101 ~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~la~~~~~~~~~~~A~~ 174 (311)
T 3nf1_A 101 KTLGKDHP-AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG----KDHPDV-AKQLNNLALLCQNQGKYEEVEY 174 (311)
T ss_dssp HHHCTTCH-HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC----TTCHHH-HHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHhCCCCh-HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcC----CCChHH-HHHHHHHHHHHHHcCCHHHHHH
Confidence 3 44577899999999999999999999999987533100 123555 7888999999999999999999
Q ss_pred HHHHHHhh--------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC---------------------------
Q 017532 278 EYEECIER--------DYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPT--------------------------- 322 (370)
Q Consensus 278 ~~~~~l~~--------~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~--------------------------- 322 (370)
+|++++.. +|....+++++|.++...|++++|++.++++++..|.
T Consensus 175 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (311)
T 3nf1_A 175 YYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQ 254 (311)
T ss_dssp HHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCch
Confidence 99999998 6777789999999999999999999999999985322
Q ss_pred -------------------cchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCC
Q 017532 323 -------------------VALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAP 360 (370)
Q Consensus 323 -------------------~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~ 360 (370)
......++++++.+|... +..+++..+++..-+..+
T Consensus 255 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 255 KDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQ--GKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp ---CCSCCCC---------CHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHhh
Confidence 112256778899998754 346777777766554433
No 78
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.69 E-value=8.8e-16 Score=139.80 Aligned_cols=185 Identities=7% Similarity=0.021 Sum_probs=143.2
Q ss_pred cccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC-
Q 017532 131 IKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNG-LD- 208 (370)
Q Consensus 131 ~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-~~- 208 (370)
...|++++|++.+...+...... +.. ...+.++..+|.+|...|++++|+..|++++...+. .+
T Consensus 47 ~~~g~~~~A~~~~~~al~~~~~~------~~~--------~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~ 112 (307)
T 2ifu_A 47 KNAKQLEQAKDAYLQEAEAHANN------RSL--------FHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTP 112 (307)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHT------TCH--------HHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHc------CCH--------HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 45688888888888776544321 000 012356778999999999999999999999887541 22
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh
Q 017532 209 ---PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIER 285 (370)
Q Consensus 209 ---~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~ 285 (370)
..++..+|.+|.. |++++|+.+|++++.+.+.. .++.....++.++|.++..+|++++|+.+|++++.+
T Consensus 113 ~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~-------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 184 (307)
T 2ifu_A 113 DTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE-------ERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSM 184 (307)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC-------CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3577899999999 99999999999999987763 223333678899999999999999999999999998
Q ss_pred CCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchh--HHHHHHHHHHHH
Q 017532 286 DYND------IVAINNKALCLMYLRDLSDSIKVLENALERVPTVALN--ETLVVNLCSMYE 338 (370)
Q Consensus 286 ~p~~------~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~--~~~~~nl~~lye 338 (370)
.|.+ ..++.++|.++...|++++|+..|++++ .+|++... ...+.++...|+
T Consensus 185 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~~ 244 (307)
T 2ifu_A 185 YKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAYD 244 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHHH
T ss_pred HHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHHH
Confidence 6543 3478899999999999999999999999 99976322 234555665554
No 79
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.69 E-value=1.3e-15 Score=137.45 Aligned_cols=153 Identities=9% Similarity=0.030 Sum_probs=136.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
..++.+|..+...|++++|+..|+++++.+| +++.+++.+|.++.+.|++++|+..|++++... |+.
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~------------p~~ 184 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD------------QDT 184 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG------------CSH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh------------cch
Confidence 4556889999999999999999999999999 999999999999999999999999999998543 222
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHH
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLC 334 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~ 334 (370)
.......+..+...++.++|+..|+++++.+|+++.+++++|.++...|++++|+..|+++++.+|++ ....+..+++
T Consensus 185 -~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~-~~~~a~~~l~ 262 (287)
T 3qou_A 185 -RYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA-ADGQTRXTFQ 262 (287)
T ss_dssp -HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG-GGGHHHHHHH
T ss_pred -HHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc-ccchHHHHHH
Confidence 44566678888899999999999999999999999999999999999999999999999999999975 2256889999
Q ss_pred HHHHhccC
Q 017532 335 SMYELAYV 342 (370)
Q Consensus 335 ~lyel~~~ 342 (370)
.+|.....
T Consensus 263 ~~~~~~g~ 270 (287)
T 3qou_A 263 EILAALGT 270 (287)
T ss_dssp HHHHHHCT
T ss_pred HHHHHcCC
Confidence 99986554
No 80
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.68 E-value=5.8e-16 Score=129.01 Aligned_cols=163 Identities=7% Similarity=-0.022 Sum_probs=130.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHH
Q 017532 176 VLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFR 255 (370)
Q Consensus 176 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~ 255 (370)
.++.+|..+...|++++|+..|+++++.+| +++.++..+|.++...|++++|+..|+++++..+ +|.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p----------~~~-- 74 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLEYQ----------DNS-- 74 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC----------CHH--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC----------ChH--
Confidence 345788899999999999999999999999 9999999999999999999999999999985422 232
Q ss_pred HHHHHhHHHHH-HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHH
Q 017532 256 NLVSRNKALIY-LVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLC 334 (370)
Q Consensus 256 ~~~~~~~g~~~-~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~ 334 (370)
.+...+.+. ...++..+|+..|+++++.+|+++.+++++|.++...|++++|+..|+++++.+|++. ...+.++++
T Consensus 75 --~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~a~~~l~ 151 (176)
T 2r5s_A 75 --YKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQ-DGEVKKTFM 151 (176)
T ss_dssp --HHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTT-TTHHHHHHH
T ss_pred --HHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccC-hHHHHHHHH
Confidence 223334332 2334555789999999999999999999999999999999999999999999999751 145888999
Q ss_pred HHHHhccCCchhhHHHHHHHH
Q 017532 335 SMYELAYVNHSDIKRTLSSWI 355 (370)
Q Consensus 335 ~lyel~~~~~~~~~~~ll~~~ 355 (370)
.+|....+.. +....+.+.+
T Consensus 152 ~~~~~~g~~~-~A~~~y~~al 171 (176)
T 2r5s_A 152 DILSALGQGN-AIASKYRRQL 171 (176)
T ss_dssp HHHHHHCSSC-HHHHHHHHHH
T ss_pred HHHHHhCCCC-cHHHHHHHHH
Confidence 9988655533 3444444333
No 81
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.68 E-value=2.4e-15 Score=148.50 Aligned_cols=135 Identities=10% Similarity=-0.041 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
.+++.+|.++...|++++|+..|+++++.+| .+..++..+|.++...|++++|+++|++++++.++.
T Consensus 24 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------------ 90 (568)
T 2vsy_A 24 VAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH------------ 90 (568)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC------------
Confidence 4667899999999999999999999999999 999999999999999999999999999999765442
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHhCCCc
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYL---RDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~---g~~~~A~~~l~~al~~~p~~ 323 (370)
..++.++|.++...|++++|++.|+++++.+|++..++.++|.++... |++++|++.++++++.+|+.
T Consensus 91 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 91 -PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 567889999999999999999999999999999999999999999999 99999999999999999986
No 82
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.67 E-value=2.5e-15 Score=128.41 Aligned_cols=132 Identities=12% Similarity=0.118 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
..++.+|..+...|++++|+..|++++ + .++.+++.+|.++...|++++|+.+|++++++.+..
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~---~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------------ 70 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ---D-PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL------------ 70 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS---S-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc---C-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------------
Confidence 345788999999999999999999996 3 467899999999999999999999999999764432
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI----------------VAINNKALCLMYLRDLSDSIKVLENALE 318 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~----------------~~~~nla~~~~~~g~~~~A~~~l~~al~ 318 (370)
..++.++|.+++..|++++|+..|+++++..|.+. .+++++|.++...|++++|++.|+++++
T Consensus 71 -~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 71 -AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred -hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 56788999999999999999999999999888766 9999999999999999999999999999
Q ss_pred hCCCc
Q 017532 319 RVPTV 323 (370)
Q Consensus 319 ~~p~~ 323 (370)
.+|+.
T Consensus 150 ~~p~~ 154 (213)
T 1hh8_A 150 MKSEP 154 (213)
T ss_dssp TCCSG
T ss_pred cCccc
Confidence 99975
No 83
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.67 E-value=2.8e-14 Score=129.79 Aligned_cols=222 Identities=9% Similarity=-0.031 Sum_probs=140.6
Q ss_pred HHHHHHHHHhhhccccCCchHHHHHHHHHHHHHh-------hhcCH-------HHHHHHhhhcCC-CCCCCCcccccCCC
Q 017532 45 RTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALM-------KLRRF-------DEAQQELDSLED-FNSSGYQYETYPHI 109 (370)
Q Consensus 45 ~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~-------~l~~~-------~~A~~~~~~~~~-l~~~~~~~~~~~~~ 109 (370)
++|+..|++++.. +|.+...|+.+ +..+. +.|++ ++|...+++... +++ +.
T Consensus 33 ~~a~~~~~~al~~----~p~~~~~w~~~-~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-~~-------- 98 (308)
T 2ond_A 33 KRVMFAYEQCLLV----LGHHPDIWYEA-AQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KN-------- 98 (308)
T ss_dssp HHHHHHHHHHHHH----HTTCHHHHHHH-HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-TC--------
T ss_pred HHHHHHHHHHHHH----cCCCHHHHHHH-HHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc-cc--------
Confidence 6788888887543 57765666554 44433 34665 788888887765 332 10
Q ss_pred CCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 017532 110 YPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKE 189 (370)
Q Consensus 110 ~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 189 (370)
. ......+.+....|+.++|...+..++...+. ... .++..++.++.+.|+
T Consensus 99 --------~--~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------------~~~-------~~~~~~~~~~~~~~~ 149 (308)
T 2ond_A 99 --------M--LLYFAYADYEESRMKYEKVHSIYNRLLAIEDI------------DPT-------LVYIQYMKFARRAEG 149 (308)
T ss_dssp --------H--HHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS------------CTH-------HHHHHHHHHHHHHHC
T ss_pred --------H--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc------------Ccc-------HHHHHHHHHHHHhcC
Confidence 0 11122233334556666666666555431110 000 144567777777777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHH
Q 017532 190 YNVCFDLMNESIGRGNGLDPILVSKLGFIQMQ-VGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLV 268 (370)
Q Consensus 190 ~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~ 268 (370)
+++|+..|+++++..| .+..++...+.+... .|++++|.+.|++++++.++. ..+|..+|..+..
T Consensus 150 ~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~-------------~~~~~~~~~~~~~ 215 (308)
T 2ond_A 150 IKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI-------------PEYVLAYIDYLSH 215 (308)
T ss_dssp HHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------------HHHHHHHHHHHHH
Confidence 8888888887777777 666666555554332 577777888887777654432 4556777777777
Q ss_pred cCCHHHHHHHHHHHHhh---CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 269 GKDYVSAVREYEECIER---DYN-DIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 269 ~g~~~eA~~~~~~~l~~---~p~-~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
.|++++|+..|++++.. +|+ ...++.+++......|++++|...++++++..|+.
T Consensus 216 ~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 216 LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp TCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred CCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccc
Confidence 77888888888877774 443 56677777777777777778877777777777764
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.67 E-value=3.9e-15 Score=134.48 Aligned_cols=174 Identities=11% Similarity=-0.060 Sum_probs=137.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC-C----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 179 CLIGYHLSSKEYNVCFDLMNESIGRGN-G----LDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 179 ~la~~~~~~g~~~~A~~~~~~~l~~~~-~----~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
..+.++...|+|++|+..|++++...+ . ....++..+|.+|..+|++++|+.+|++++++.+.. .++.
T Consensus 42 ~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~-------g~~~ 114 (292)
T 1qqe_A 42 QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR-------GQFR 114 (292)
T ss_dssp HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-------TCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-------CCHH
Confidence 345677888999999999999988753 0 124678999999999999999999999999987763 2333
Q ss_pred HHHHHHHhHHHHHHHc-CCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchh
Q 017532 254 FRNLVSRNKALIYLVG-KDYVSAVREYEECIERDYND------IVAINNKALCLMYLRDLSDSIKVLENALERVPTVALN 326 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~-g~~~eA~~~~~~~l~~~p~~------~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~ 326 (370)
....++.++|.++... |++++|+.+|++++++.|.+ ..+++++|.++..+|++++|+.+|+++++..|+....
T Consensus 115 ~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 194 (292)
T 1qqe_A 115 RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS 194 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcc
Confidence 3367889999999996 99999999999999998754 4679999999999999999999999999999876321
Q ss_pred ----HHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCC
Q 017532 327 ----ETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPD 361 (370)
Q Consensus 327 ----~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d 361 (370)
...+++++.+|... +..+.+...++......|+
T Consensus 195 ~~~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~l~p~ 231 (292)
T 1qqe_A 195 QWSLKDYFLKKGLCQLAA--TDAVAAARTLQEGQSEDPN 231 (292)
T ss_dssp GGGHHHHHHHHHHHHHHT--TCHHHHHHHHHGGGCC---
T ss_pred cHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCC
Confidence 12678888888643 3456666666655554444
No 85
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.66 E-value=3.3e-15 Score=139.77 Aligned_cols=250 Identities=9% Similarity=-0.004 Sum_probs=182.1
Q ss_pred HHHHHHcCChHHHHHHHHHhhhcccc-CCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCC
Q 017532 35 LQDLATRGSWRTIIDNVSRARSQSLL-TQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNR 113 (370)
Q Consensus 35 l~~l~~~g~~~~Ai~~~~~~~~~~~~-~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~ 113 (370)
.......|+|++|+..+.++...... .++......+...+.++..+|+++.|...+.+..++.... ++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~----------~~~ 177 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH----------PLY 177 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS----------TTC
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC----------CCc
Confidence 34457899999999999998654321 1122122233444788999999999999998885432100 000
Q ss_pred CCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Q 017532 114 TGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVC 193 (370)
Q Consensus 114 ~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 193 (370)
. ...... ....+.+....|++++|++.+...+..++..- . ......+++++|.++...|++++|
T Consensus 178 ~-~~~~~~-~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~----~----------~~~~~~~~~~lg~~y~~~~~~~~A 241 (378)
T 3q15_A 178 S-IRTIQS-LFVIAGNYDDFKHYDKALPHLEAALELAMDIQ----N----------DRFIAISLLNIANSYDRSGDDQMA 241 (378)
T ss_dssp H-HHHHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT----C----------HHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred h-hhHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC----C----------HHHHHHHHHHHHHHHHHCCCHHHH
Confidence 0 001111 12345556788999999999988876554321 0 002246788999999999999999
Q ss_pred HHHHHHHHh-----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHH
Q 017532 194 FDLMNESIG-----RGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLV 268 (370)
Q Consensus 194 ~~~~~~~l~-----~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~ 268 (370)
+..+++++. .+| ....++..+|.++...|++++|+.+|++++++.+.. .++.. ......++.++..
T Consensus 242 ~~~~~~al~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~-~~~~~~l~~ly~~ 312 (378)
T 3q15_A 242 VEHFQKAAKVSREKVPD-LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR-------SHKFY-KELFLFLQAVYKE 312 (378)
T ss_dssp HHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT-------CCSCH-HHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhhCCh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-------CCHHH-HHHHHHHHHHHhC
Confidence 999999999 777 668899999999999999999999999999986653 22323 2345678888888
Q ss_pred cCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 017532 269 GKD---YVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERV 320 (370)
Q Consensus 269 ~g~---~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~ 320 (370)
.|+ +.+|+..+++. ...|....++..+|.++...|++++|+.+|+++++..
T Consensus 313 ~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 313 TVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp SCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 998 88999888873 2234555788899999999999999999999998764
No 86
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.66 E-value=1.7e-15 Score=152.81 Aligned_cols=157 Identities=11% Similarity=0.008 Sum_probs=140.7
Q ss_pred HhcCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHH
Q 017532 185 LSSKEYNVCFDLMNESI--------GRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRN 256 (370)
Q Consensus 185 ~~~g~~~~A~~~~~~~l--------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~ 256 (370)
...|++++|+..+++++ +.+| .+..++..+|.++.+.|++++|+..|++++++.+++ .
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-------------~ 467 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS-ESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWR-------------W 467 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC-------------H
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc-cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch-------------H
Confidence 67899999999999999 8889 999999999999999999999999999999876553 6
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 017532 257 LVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSM 336 (370)
Q Consensus 257 ~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~l 336 (370)
.++.++|.++...|++++|++.|+++++++|+++.+++++|.++...|++++ ++.|+++++.+|++ ..+++|++.+
T Consensus 468 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~---~~a~~~lg~~ 543 (681)
T 2pzi_A 468 RLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGV---ISAAFGLARA 543 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTC---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCch---HHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999999999999 99999999999998 7899999999
Q ss_pred HHhccCCchhhHHHHHHHHhhhCCC
Q 017532 337 YELAYVNHSDIKRTLSSWIGRVAPD 361 (370)
Q Consensus 337 yel~~~~~~~~~~~ll~~~~~~~~d 361 (370)
|... +..+++...++......|+
T Consensus 544 ~~~~--g~~~~A~~~~~~al~l~P~ 566 (681)
T 2pzi_A 544 RSAE--GDRVGAVRTLDEVPPTSRH 566 (681)
T ss_dssp HHHT--TCHHHHHHHHHTSCTTSTT
T ss_pred HHHc--CCHHHHHHHHHhhcccCcc
Confidence 8753 4467777776665555554
No 87
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.66 E-value=2.6e-15 Score=148.27 Aligned_cols=161 Identities=7% Similarity=-0.060 Sum_probs=124.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHH
Q 017532 187 SKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIY 266 (370)
Q Consensus 187 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~ 266 (370)
.|++++|+..|+++++.+| .+..+++.+|.++...|++++|+++|++++++.++ . ..++.++|.++
T Consensus 2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------------~-~~~~~~lg~~~ 67 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG------------H-PEAVARLGRVR 67 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT------------C-HHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------C-HHHHHHHHHHH
Confidence 4899999999999999999 99999999999999999999999999999964333 3 66789999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccC-Cch
Q 017532 267 LVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYV-NHS 345 (370)
Q Consensus 267 ~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~-~~~ 345 (370)
..+|++++|++.|+++++.+|+++.+++++|.++...|++++|++.|+++++.+|++ ...+++++.+|....+ +..
T Consensus 68 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~g~~ 144 (568)
T 2vsy_A 68 WTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE---PYITAQLLNWRRRLCDWRAL 144 (568)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCCTTH
T ss_pred HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhccccH
Confidence 999999999999999999999999999999999999999999999999999999987 7889999999885411 446
Q ss_pred hhHHHHHHHHhhhCCCCCC
Q 017532 346 DIKRTLSSWIGRVAPDDFD 364 (370)
Q Consensus 346 ~~~~~ll~~~~~~~~d~~~ 364 (370)
++....++...+..|+..+
T Consensus 145 ~~A~~~~~~al~~~p~~~~ 163 (568)
T 2vsy_A 145 DVLSAQVRAAVAQGVGAVE 163 (568)
T ss_dssp HHHHHHHHHHHHHTCCCSC
T ss_pred HHHHHHHHHHHhcCCcccC
Confidence 7777777776666666543
No 88
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.65 E-value=2.3e-15 Score=125.09 Aligned_cols=126 Identities=11% Similarity=0.118 Sum_probs=113.4
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHH
Q 017532 184 HLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKA 263 (370)
Q Consensus 184 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g 263 (370)
+...|++++|+..+++++..+| .++.++..+|.++...|++++|+.+|++++++.+.+ ..++..+|
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-------------~~~~~~la 85 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN-------------AELYAALA 85 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC-------------HHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------------HHHHHHHH
Confidence 3456999999999999999999 999999999999999999999999999999876553 45678899
Q ss_pred HH-HHHcCCH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 264 LI-YLVGKDY--VSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 264 ~~-~~~~g~~--~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
.+ ++..|++ ++|+..|+++++.+|+++.+++++|.++...|++++|+..|+++++.+|++
T Consensus 86 ~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 86 TVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 99 8899999 999999999999999999999999999999999999999999999999986
No 89
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.65 E-value=1.4e-15 Score=122.00 Aligned_cols=115 Identities=18% Similarity=0.070 Sum_probs=103.4
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHH
Q 017532 195 DLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVS 274 (370)
Q Consensus 195 ~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~e 274 (370)
..|++++..+| .+...++.+|.++...|++++|+..|++++.+.+.+ ..++.++|.++...|++++
T Consensus 5 ~~l~~al~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-------------~~~~~~lg~~~~~~g~~~~ 70 (142)
T 2xcb_A 5 GTLAMLRGLSE-DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD-------------ARYFLGLGACRQSLGLYEQ 70 (142)
T ss_dssp ----CCTTCCH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------HHHHHHHHHHHHHTTCHHH
T ss_pred hhHHHHHcCCH-HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc-------------HHHHHHHHHHHHHHhhHHH
Confidence 46778888888 888999999999999999999999999999764442 5678899999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 275 AVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 275 A~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
|+..|++++.++|+++.+++++|.++...|++++|++.|+++++.+|++
T Consensus 71 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 119 (142)
T 2xcb_A 71 ALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ 119 (142)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999999999875
No 90
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.65 E-value=1.1e-14 Score=118.82 Aligned_cols=133 Identities=14% Similarity=0.099 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
+..++.+|.++...|++++|+..|+++++..| .+..++..+|.++...|++++|+.+|++++++.+..
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~----------- 80 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY----------- 80 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-----------
Confidence 46677899999999999999999999999999 999999999999999999999999999999764432
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHHhCCHHHHHHHHHHHHHhC
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALC--LMYLRDLSDSIKVLENALERV 320 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~--~~~~g~~~~A~~~l~~al~~~ 320 (370)
..++.++|.++...|++++|+.+|+++++.+|.+..++.+++.+ +...|++++|++.++++....
T Consensus 81 --~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 81 --IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 56688999999999999999999999999999999988666555 888899999999999887654
No 91
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.64 E-value=1e-13 Score=129.01 Aligned_cols=287 Identities=11% Similarity=0.019 Sum_probs=194.0
Q ss_pred HHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCC
Q 017532 35 LQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRT 114 (370)
Q Consensus 35 l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 114 (370)
...++..|++++|+..+.++....-..+|......+...+.++...|++++|...+.+...+.+. ..
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-------------~~ 87 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ-------------HD 87 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-------------TT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHh-------------cC
Confidence 34566899999999999997654311111111122344467788999999999999887543210 00
Q ss_pred CcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Q 017532 115 GSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCF 194 (370)
Q Consensus 115 ~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 194 (370)
............+.+....|++.+|+..+...+...+..-... . .....++.++|.++...|++++|.
T Consensus 88 ~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~---~---------~~~~~~~~~la~~~~~~g~~~~A~ 155 (373)
T 1hz4_A 88 VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQ---L---------PMHEFLVRIRAQLLWAWARLDEAE 155 (373)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTT---S---------THHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc---C---------cHHHHHHHHHHHHHHHhcCHHHHH
Confidence 0000011122344555778999999999888776554321000 0 001245678999999999999999
Q ss_pred HHHHHHHhCCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcC
Q 017532 195 DLMNESIGRGNGL----DPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGK 270 (370)
Q Consensus 195 ~~~~~~l~~~~~~----~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g 270 (370)
..+++++...+.. ...++..+|.++...|++++|..++++++.+.+.. ...+..........+.++...|
T Consensus 156 ~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~------~~~~~~~~~~~~~~~~~~~~~g 229 (373)
T 1hz4_A 156 ASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG------KYHSDWISNANKVRVIYWQMTG 229 (373)
T ss_dssp HHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS------CCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc------CcchhHHHHHHHHHHHHHHHCC
Confidence 9999999877621 23567889999999999999999999999876542 1112221222234566688999
Q ss_pred CHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcc---hhHHHHHHHHHHHHhccCC
Q 017532 271 DYVSAVREYEECIERDYND----IVAINNKALCLMYLRDLSDSIKVLENALERVPTVA---LNETLVVNLCSMYELAYVN 343 (370)
Q Consensus 271 ~~~eA~~~~~~~l~~~p~~----~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~---~~~~~~~nl~~lyel~~~~ 343 (370)
++++|...+++++...|.+ ...+.++|.++...|++++|+..+++++...+... ....+...++.+|....
T Consensus 230 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g-- 307 (373)
T 1hz4_A 230 DKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAG-- 307 (373)
T ss_dssp CHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--
T ss_pred CHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhC--
Confidence 9999999999999877643 34678899999999999999999999988754321 11246778888876443
Q ss_pred chhhHHHHHHH
Q 017532 344 HSDIKRTLSSW 354 (370)
Q Consensus 344 ~~~~~~~ll~~ 354 (370)
..++....++.
T Consensus 308 ~~~~A~~~l~~ 318 (373)
T 1hz4_A 308 RKSDAQRVLLD 318 (373)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 35555555543
No 92
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.64 E-value=1e-14 Score=129.20 Aligned_cols=176 Identities=14% Similarity=0.073 Sum_probs=137.8
Q ss_pred HHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--
Q 017532 126 YAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGR-- 203 (370)
Q Consensus 126 ~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-- 203 (370)
.+.+....|++++|+..+...+........... .....++..+|.++...|++++|+..+++++..
T Consensus 49 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 116 (283)
T 3edt_B 49 LALVYRDQNKYKEAAHLLNDALAIREKTLGKDH------------PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE 116 (283)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTC------------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcc------------hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 445557789999999999888766543311100 012356789999999999999999999999987
Q ss_pred ------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHH
Q 017532 204 ------GNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVR 277 (370)
Q Consensus 204 ------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~ 277 (370)
+| ....++..+|.++...|++++|+.+|++++++...... ...|.. ..++.++|.++...|++++|+.
T Consensus 117 ~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~-~~~~~~la~~~~~~g~~~~A~~ 190 (283)
T 3edt_B 117 KVLGKFHP-DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLG----PDDPNV-AKTKNNLASCYLKQGKYQDAET 190 (283)
T ss_dssp HHHCTTCH-HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSC----TTCHHH-HHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHcCCCCh-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC----CCCHHH-HHHHHHHHHHHHHcCCHHHHHH
Confidence 34 55678899999999999999999999999987433210 235555 7889999999999999999999
Q ss_pred HHHHHHhh-------------------------------------------------CCCCHHHHHHHHHHHHHhCCHHH
Q 017532 278 EYEECIER-------------------------------------------------DYNDIVAINNKALCLMYLRDLSD 308 (370)
Q Consensus 278 ~~~~~l~~-------------------------------------------------~p~~~~~~~nla~~~~~~g~~~~ 308 (370)
.|+++++. .|....++.++|.++...|++++
T Consensus 191 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 270 (283)
T 3edt_B 191 LYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEA 270 (283)
T ss_dssp HHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999986 24445677888888888888888
Q ss_pred HHHHHHHHHHh
Q 017532 309 SIKVLENALER 319 (370)
Q Consensus 309 A~~~l~~al~~ 319 (370)
|+..++++++.
T Consensus 271 A~~~~~~al~~ 281 (283)
T 3edt_B 271 AHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 88888888764
No 93
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.63 E-value=3.7e-15 Score=129.31 Aligned_cols=173 Identities=12% Similarity=0.026 Sum_probs=138.6
Q ss_pred HHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 017532 127 AVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNG 206 (370)
Q Consensus 127 a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 206 (370)
+......|+.++|+..+..++...+... ....+++.+|.++...|+|++|+..|+++++.+|
T Consensus 11 a~~~~~~g~~~~A~~~~~~~~~~~p~~~-----------------~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P- 72 (225)
T 2yhc_A 11 AQQKLQDGNWRQAITQLEALDNRYPFGP-----------------YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP- 72 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTST-----------------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCh-----------------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-
Confidence 3334667999999988888765332110 0124667899999999999999999999999999
Q ss_pred CCH---HHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHHhhcCCccCCccchHHH----------H
Q 017532 207 LDP---ILVSKLGFIQMQ------------------VGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF----------R 255 (370)
Q Consensus 207 ~~~---~~~~~lg~~~~~------------------~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~----------~ 255 (370)
.++ .+++.+|.++.. .|++++|+..|+++++..|++.. -+.. .
T Consensus 73 ~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~------a~~a~~~l~~~~~~~ 146 (225)
T 2yhc_A 73 THPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQY------TTDATKRLVFLKDRL 146 (225)
T ss_dssp TCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTT------HHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChh------HHHHHHHHHHHHHHH
Confidence 655 378889998876 67999999999999987666421 1110 0
Q ss_pred HHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 256 NLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI---VAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~---~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
......+|.+++..|++++|+..|+++++..|+++ .++.++|.++.++|++++|++.++++....|+.
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 22336789999999999999999999999999987 679999999999999999999999999988875
No 94
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.63 E-value=1.6e-14 Score=113.79 Aligned_cols=112 Identities=7% Similarity=0.006 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
+.++.++|..+++.|+|++|+..|+++++.+| .++.+++++|.++..+|++++|+..|++++++.++.. ...+.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~~ 81 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDP-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR-----ADYKL 81 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----CCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc-----hhhHH
Confidence 34567899999999999999999999999999 9999999999999999999999999999999877642 22333
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAI 293 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~ 293 (370)
. +.++.++|.++..+|++++|++.|++++..+|+ +...
T Consensus 82 ~-a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~ 119 (127)
T 4gcn_A 82 I-AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELV 119 (127)
T ss_dssp H-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHH
T ss_pred H-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHH
Confidence 3 778889999999999999999999999988775 4433
No 95
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.63 E-value=8.2e-15 Score=114.68 Aligned_cols=114 Identities=15% Similarity=0.114 Sum_probs=91.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 017532 208 DPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDY 287 (370)
Q Consensus 208 ~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p 287 (370)
.+..+..+|..++..|++++|+..|++++++.+.. ..++.++|.+++..|++++|+..|+++++++|
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 69 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED-------------ARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 69 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 35667888888888888888888888888764432 56678888888899999999999999998899
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC------CCcchhHHHHHHHHHHH
Q 017532 288 NDIVAINNKALCLMYLRDLSDSIKVLENALERV------PTVALNETLVVNLCSMY 337 (370)
Q Consensus 288 ~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~------p~~~~~~~~~~nl~~ly 337 (370)
+++.+++++|.++...|++++|+..|+++++.+ |++ ..+...+..+.
T Consensus 70 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~---~~~~~~l~~~~ 122 (126)
T 3upv_A 70 NFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSA---REIDQLYYKAS 122 (126)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTH---HHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhH---HHHHHHHHHHH
Confidence 888889999999999999999999999998888 654 55555555543
No 96
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.63 E-value=4.7e-16 Score=143.60 Aligned_cols=151 Identities=11% Similarity=0.090 Sum_probs=124.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccC---CccchHHHHHHHHHhHH
Q 017532 187 SKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFED---GLLSEVEFRNLVSRNKA 263 (370)
Q Consensus 187 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~---~~~~~p~~~~~~~~~~g 263 (370)
.+++++|+..+++++...| .....+..+|.+++..|++++|+..|++++++.+...... .....+.. ..++.++|
T Consensus 126 L~~~~~A~~~~~~a~~~~p-~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~-~~~~~nla 203 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKL-EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALR-LASHLNLA 203 (336)
T ss_dssp EEEEECCCCGGGCCHHHHH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHH-HHHHHHHH
T ss_pred EeecccccchhcCCHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHH-HHHHHHHH
Confidence 4666677777777777677 7778888888888888888888888888888766531000 00112323 67899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccC
Q 017532 264 LIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYV 342 (370)
Q Consensus 264 ~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~ 342 (370)
.+++..|++++|+..|+++++++|+++.+++++|.++..+|++++|+..|+++++++|++ ..+..+++.+|....+
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~---~~a~~~l~~~~~~~~~ 279 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN---KAAKTQLAVCQQRIRR 279 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998 7889999999886554
No 97
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.63 E-value=4.3e-15 Score=120.16 Aligned_cols=113 Identities=12% Similarity=0.062 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh----
Q 017532 210 ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIER---- 285 (370)
Q Consensus 210 ~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~---- 285 (370)
..+..+|..++..|++++|+..|++++++.++..........|.. ..+|.++|.++..+|+|++|+..|+++|++
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~-a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFD-AFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 445667777777777777877787777776652110000223433 679999999999999999999999999999
Q ss_pred ---CCCCHHHH----HHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 286 ---DYNDIVAI----NNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 286 ---~p~~~~~~----~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
+|++..+| +|+|.++..+|++++|++.|+++++++|++
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 99999999 999999999999999999999999999986
No 98
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.62 E-value=1.7e-14 Score=133.02 Aligned_cols=131 Identities=14% Similarity=0.136 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLD---------------PILVSKLGFIQMQVGDLEGAKKSFNRVEEML 239 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~ 239 (370)
.+++.+|.+++..|+|++|+..|++++...| .+ ..+++++|.++..+|++++|+.+|++++++.
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p-~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLE-YESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh-ccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 5567899999999999999999999999999 66 6899999999999999999999999999775
Q ss_pred hcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHH-HHHHHHHHH
Q 017532 240 NEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDS-IKVLENALE 318 (370)
Q Consensus 240 ~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A-~~~l~~al~ 318 (370)
+++ ..+++++|.+++..|++++|+..|+++++++|++..++.+++.++...|++++| ...|.+++.
T Consensus 227 p~~-------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 227 SNN-------------EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp TTC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCc-------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 442 667899999999999999999999999999999999999999999999999999 567777765
Q ss_pred h
Q 017532 319 R 319 (370)
Q Consensus 319 ~ 319 (370)
.
T Consensus 294 ~ 294 (336)
T 1p5q_A 294 R 294 (336)
T ss_dssp H
T ss_pred H
Confidence 4
No 99
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.61 E-value=1.4e-14 Score=124.19 Aligned_cols=116 Identities=16% Similarity=0.131 Sum_probs=105.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHh----------------HHHHHHHcCC
Q 017532 208 DPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRN----------------KALIYLVGKD 271 (370)
Q Consensus 208 ~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~----------------~g~~~~~~g~ 271 (370)
++..+...|..++..|++++|+..|++++++ +|+. ..++.. +|.++...|+
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~------------~p~~-~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 69 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIAL------------NIDR-TEMYYWTNVDKNSEISSKLATELALAYKKNRN 69 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------CHHH-HHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------------CCCC-hHHHHHhhhcchhhhhHHHHHHHHHHHHHCCC
Confidence 4567788899999999999999999999964 4544 566777 9999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHh
Q 017532 272 YVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYEL 339 (370)
Q Consensus 272 ~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel 339 (370)
+++|+..|+++++++|+++.+++++|.++...|++++|+..|+++++++|++ ..++++++.+|-.
T Consensus 70 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~lg~~~~~ 134 (208)
T 3urz_A 70 YDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN---LAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998 7888999988753
No 100
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.61 E-value=1.9e-14 Score=116.88 Aligned_cols=102 Identities=8% Similarity=-0.109 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
.+++.+|.++...|+|++|+..|++++..+| .++.+|..+|.++...|++++|+.+|++++++.|++
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~------------ 103 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND------------ 103 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC------------
Confidence 5678999999999999999999999999999 999999999999999999999999999999876653
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI 290 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~ 290 (370)
..+++++|.++...|++++|+..|++++++.|+.+
T Consensus 104 -~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 104 -YTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp -CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred -cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 56789999999999999999999999999999865
No 101
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.60 E-value=2.5e-14 Score=112.58 Aligned_cols=102 Identities=20% Similarity=0.237 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017532 209 PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYN 288 (370)
Q Consensus 209 ~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~ 288 (370)
..++..+|.++++.|++++|+.+|++++++.|+. ..++.++|.+++.+|++++|++.|+++++++|+
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~-------------~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~ 74 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN-------------ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRE 74 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------------HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcc
Confidence 4567889999999999999999999999875542 667899999999999999999999999999876
Q ss_pred CH-------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 289 DI-------VAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 289 ~~-------~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
+. .++.++|.++...|++++|++.|+++++..|++
T Consensus 75 ~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 75 TRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred cchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence 53 589999999999999999999999999999874
No 102
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.60 E-value=3.3e-14 Score=111.18 Aligned_cols=115 Identities=13% Similarity=-0.053 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
+..++.+|..++..|+|++|+..|+++++.+| .++.++..+|.++...|++++|+..|++++++.++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----------- 71 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF----------- 71 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-----------
Confidence 35677899999999999999999999999999 999999999999999999999999999999765442
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHH
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERD------YNDIVAINNKALCLMY 302 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~------p~~~~~~~nla~~~~~ 302 (370)
..++.++|.++...|++++|+..|+++++++ |.+..++..++.+...
T Consensus 72 --~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 72 --VRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 5678899999999999999999999999999 9999888888877654
No 103
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.60 E-value=1.1e-14 Score=119.38 Aligned_cols=126 Identities=14% Similarity=0.068 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccc-------hHHHHHHHHHhHHHHHHHcCCHHHHHHHHHH
Q 017532 209 PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLS-------EVEFRNLVSRNKALIYLVGKDYVSAVREYEE 281 (370)
Q Consensus 209 ~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~-------~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~ 281 (370)
...+..+|..++..|++++|+..|++++++.+..... ..+. +|.. ..++.++|.+++..|++++|+..|++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILR-EKPGEPEWVELDRKN-IPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT-SCTTSHHHHHHHHTH-HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccc-CCCCHHHHHHHHHHH-HHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 4567889999999999999999999999874321000 0011 4444 67899999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhH-HHHHHHHHHHHh
Q 017532 282 CIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNE-TLVVNLCSMYEL 339 (370)
Q Consensus 282 ~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~-~~~~nl~~lyel 339 (370)
+++++|+++.+++++|.++..+|++++|+..|+++++++|++ . .+...+..+...
T Consensus 89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~~l~~~~~~ 144 (162)
T 3rkv_A 89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAA---ASVVAREMKIVTER 144 (162)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG---HHHHHHHHHHHHHH
T ss_pred HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999986 4 455566665543
No 104
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.59 E-value=2.8e-14 Score=117.14 Aligned_cols=104 Identities=13% Similarity=0.067 Sum_probs=86.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017532 207 LDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD 286 (370)
Q Consensus 207 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~ 286 (370)
.++..+..+|.+++..|++++|+.+|++++++.+.. ..++.++|.+++..|++++|+..|+++++++
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 75 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN-------------PIYLSNRAAAYSASGQHEKAAEDAELATVVD 75 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC-------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 445677888888888888888888888888664432 5667888888888888888888888888888
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 287 YNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 287 p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
|+++.+++++|.++...|++++|+..|+++++++|++
T Consensus 76 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 112 (164)
T 3sz7_A 76 PKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNG 112 (164)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSS
T ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Confidence 8888888888888888888888888888888888876
No 105
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.59 E-value=2.9e-14 Score=117.08 Aligned_cols=115 Identities=19% Similarity=0.124 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
+..++.+|.+++..|+|++|+..|+++++.+| .++.+++.+|.++...|++++|+.+|++++++.+..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----------- 78 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY----------- 78 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----------
Confidence 35677899999999999999999999999999 999999999999999999999999999999765442
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMY 302 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~ 302 (370)
..++.++|.+++..|++++|+.+|+++++++|++..++.+++.+..+
T Consensus 79 --~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 125 (164)
T 3sz7_A 79 --SKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTK 125 (164)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 66789999999999999999999999999999999988888876554
No 106
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.58 E-value=8.4e-14 Score=108.33 Aligned_cols=118 Identities=14% Similarity=0.120 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
.+++.+|..+...|++++|+..+++++...| .+..++..+|.++...|++++|+.+|++++++.+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------------ 79 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY------------ 79 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC------------
Confidence 4556777777778888888888888887777 777777778888888888888888888877653331
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCH
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDL 306 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~ 306 (370)
..++..+|.++...|++++|+..|+++++.+|++..++.++|.++...|++
T Consensus 80 -~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 80 -SKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred -HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 445677788888888888888888888888887777888888777777764
No 107
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.58 E-value=1.1e-13 Score=119.02 Aligned_cols=162 Identities=10% Similarity=-0.028 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHhhcCCccCCcc
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVG----DLEGAKKSFNRVEEMLNEGKFEDGLL 249 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g----~~~~A~~~~~~a~~l~~~~~~~~~~~ 249 (370)
..+++.+|.++...+++++|+.+|+++.+. .++.+++.+|.+|.. | ++++|+.+|+++.+.
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----------- 82 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQ---GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----------- 82 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT---TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT-----------
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC-----------
Confidence 467889999999999999999999999875 568999999999998 7 999999999999741
Q ss_pred chHHHHHHHHHhHHHHHHH----cCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHh
Q 017532 250 SEVEFRNLVSRNKALIYLV----GKDYVSAVREYEECIERDY--NDIVAINNKALCLMY----LRDLSDSIKVLENALER 319 (370)
Q Consensus 250 ~~p~~~~~~~~~~g~~~~~----~g~~~eA~~~~~~~l~~~p--~~~~~~~nla~~~~~----~g~~~~A~~~l~~al~~ 319 (370)
.+ ..+..++|.+|.. .+++++|+.+|+++++.+| .++.+++++|.+|.. .+++++|+..|+++++.
T Consensus 83 g~----~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 83 GS----KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp TC----HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred CC----HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 12 4567889999988 8999999999999999988 458999999999999 88999999999999998
Q ss_pred CCCcchhHHHHHHHHHHHHhcc----CCchhhHHHHHHHHhhh
Q 017532 320 VPTVALNETLVVNLCSMYELAY----VNHSDIKRTLSSWIGRV 358 (370)
Q Consensus 320 ~p~~~~~~~~~~nl~~lyel~~----~~~~~~~~~ll~~~~~~ 358 (370)
|.+ ....++|+.+|.... ....++...+++.-...
T Consensus 159 -~~~---~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 159 -SRT---GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp -SCT---THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred -CCC---HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 433 567899999998542 22456667776655443
No 108
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.58 E-value=6.2e-14 Score=109.78 Aligned_cols=116 Identities=20% Similarity=0.207 Sum_probs=69.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017532 207 LDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD 286 (370)
Q Consensus 207 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~ 286 (370)
.+...+..+|.++...|++++|+..|+++++..+. . ..++..+|.++...|++++|+..|+++++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~------------~-~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 80 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK------------D-AKLYSNRAACYTKLLEFQLALKDCEECIQLE 80 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT------------C-HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------------c-HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 34455566666666666666666666666632221 1 3445556666666666666666666666666
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Q 017532 287 YNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYE 338 (370)
Q Consensus 287 p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lye 338 (370)
|.++.+++++|.++...|++++|++.|+++++.+|.. ..+.++++.+|.
T Consensus 81 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~ 129 (133)
T 2lni_A 81 PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSC---KEAADGYQRCMM 129 (133)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG---THHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHH
Confidence 6666666666666666666666666666666666654 455555555554
No 109
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.57 E-value=4.1e-15 Score=126.16 Aligned_cols=157 Identities=13% Similarity=0.041 Sum_probs=113.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCC---ccchHHHHHH
Q 017532 181 IGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDG---LLSEVEFRNL 257 (370)
Q Consensus 181 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~---~~~~p~~~~~ 257 (370)
+......|+++.|...+.......+ .....+..+|..++..|++++|+..|++++++.+....... ..........
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKV-QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp -----------CCCSGGGCCHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 3344445666666666655444434 45566777888888888888888888888876554310000 0000111246
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Q 017532 258 VSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMY 337 (370)
Q Consensus 258 ~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~ly 337 (370)
++.++|.+++..|++++|+.+|++++..+|+++.+++++|.++...|++++|+..|+++++.+|++ ..+..+++.++
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~ 166 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN---LDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc---HHHHHHHHHHH
Confidence 788999999999999999999999999999999999999999999999999999999999999988 78888888888
Q ss_pred Hhcc
Q 017532 338 ELAY 341 (370)
Q Consensus 338 el~~ 341 (370)
....
T Consensus 167 ~~~~ 170 (198)
T 2fbn_A 167 NKLK 170 (198)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 110
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.56 E-value=4.1e-13 Score=122.01 Aligned_cols=184 Identities=11% Similarity=0.128 Sum_probs=146.3
Q ss_pred HHhHHHHHHHH-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHH
Q 017532 163 EESVKSWKKRE-------IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPI-LVSKLGFIQMQVGDLEGAKKSFNR 234 (370)
Q Consensus 163 ~~~~~~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~-~~~~lg~~~~~~g~~~~A~~~~~~ 234 (370)
+++...+.+.+ ..++..+|.++...|++++|..+|+++++..| .++. ++..+|.++.+.|++++|...|++
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 159 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIED-IDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSS-SCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccc-cCccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 45555555544 45788999999999999999999999999999 7775 899999999999999999999999
Q ss_pred HHHHhhcCCccCCccchHHHHHHHHHhHHHHHH-HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 017532 235 VEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYL-VGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVL 313 (370)
Q Consensus 235 a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~-~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l 313 (370)
+++..+.. ..++...+.+.. ..|++++|+..|+++++.+|+++.++.++|..+...|++++|+..|
T Consensus 160 a~~~~p~~-------------~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~ 226 (308)
T 2ond_A 160 AREDARTR-------------HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLF 226 (308)
T ss_dssp HHTSTTCC-------------THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHhcCCCC-------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99643321 344544555433 2799999999999999999999999999999999999999999999
Q ss_pred HHHHHh---CCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCCCCC
Q 017532 314 ENALER---VPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDDFD 364 (370)
Q Consensus 314 ~~al~~---~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d~~~ 364 (370)
++++.. .|+. ...++.++..++... +..+....+.....+..|++.+
T Consensus 227 ~~al~~~~l~p~~--~~~l~~~~~~~~~~~--g~~~~a~~~~~~a~~~~p~~~~ 276 (308)
T 2ond_A 227 ERVLTSGSLPPEK--SGEIWARFLAFESNI--GDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp HHHHHSSSSCGGG--CHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHTTTTTS
T ss_pred HHHHhccCCCHHH--HHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHcccccc
Confidence 999996 4431 266777777776543 4467777777777777777654
No 111
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.56 E-value=3.4e-12 Score=123.54 Aligned_cols=202 Identities=13% Similarity=0.022 Sum_probs=148.3
Q ss_pred cCCccchHHHHHHHHHHHHHH----HHH-Hh-----hHhhHHhHHHHHHHH----HHHHHHHHHHHHh----cCCHHHHH
Q 017532 133 LSNRQVGLDRFYELLDFVREK----LAR-KL-----AEKLEESVKSWKKRE----IFVLNCLIGYHLS----SKEYNVCF 194 (370)
Q Consensus 133 ~g~~~~al~~l~~ll~~~~~~----~~~-~~-----~~~~~~~~~~~~~~~----~~~~~~la~~~~~----~g~~~~A~ 194 (370)
.++..+|+..+.......... +.. .. ......+...++... ..+++.+|.++.. .+++++|+
T Consensus 200 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~ 279 (490)
T 2xm6_A 200 ERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKAL 279 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHH
Confidence 577777777776654321110 000 00 122334444444433 5678888888888 89999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHc
Q 017532 195 DLMNESIGRGNGLDPILVSKLGFIQMQV-----GDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVG 269 (370)
Q Consensus 195 ~~~~~~l~~~~~~~~~~~~~lg~~~~~~-----g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~ 269 (370)
.+|+++.+. .++.+++.+|.++... +++++|+.+|+++.+. .+ ..++.++|.++...
T Consensus 280 ~~~~~a~~~---~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-----------~~----~~a~~~lg~~y~~~ 341 (490)
T 2xm6_A 280 EWYRKSAEQ---GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-----------GD----ATAQANLGAIYFRL 341 (490)
T ss_dssp HHHHHHHTT---TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-----------TC----HHHHHHHHHHHHHS
T ss_pred HHHHHHHHc---CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-----------CC----HHHHHHHHHHHHhC
Confidence 999999865 4577889999999988 8999999999999852 12 34678899999886
Q ss_pred C---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhcc-
Q 017532 270 K---DYVSAVREYEECIERDYNDIVAINNKALCLMY----LRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAY- 341 (370)
Q Consensus 270 g---~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~----~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~- 341 (370)
| ++++|+.+|+++++. .++.+++++|.++.. .+++++|+..|+++++..+ ....++|+.+|....
T Consensus 342 g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~-----~~a~~~Lg~~y~~g~g 414 (490)
T 2xm6_A 342 GSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGL-----SAAQVQLGEIYYYGLG 414 (490)
T ss_dssp CCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHTSS
T ss_pred CCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCC-----HHHHHHHHHHHHcCCC
Confidence 6 899999999999987 678999999999999 8999999999999998753 678899999998521
Q ss_pred -CCchhhHHHHHHHHhhhC
Q 017532 342 -VNHSDIKRTLSSWIGRVA 359 (370)
Q Consensus 342 -~~~~~~~~~ll~~~~~~~ 359 (370)
.++.+++..+.+......
T Consensus 415 ~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 415 VERDYVQAWAWFDTASTND 433 (490)
T ss_dssp SCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCC
Confidence 344566666666555444
No 112
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.56 E-value=4.4e-14 Score=110.20 Aligned_cols=100 Identities=16% Similarity=0.078 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 017532 211 LVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI 290 (370)
Q Consensus 211 ~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~ 290 (370)
.++.+|.++.+.|++++|+..|++++++.|++ ..++..+|.++...|++++|+..|+++++++|+++
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~-------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~ 85 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPER-------------EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI 85 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 46788999999999999999999999765442 67789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 291 VAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 291 ~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
.+++++|.++...|++++|+..|+++++.+|++
T Consensus 86 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 86 AVHAALAVSHTNEHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 999999999999999999999999999999975
No 113
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.56 E-value=6e-14 Score=112.45 Aligned_cols=113 Identities=13% Similarity=-0.059 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
..++.+|..++..|++++|+..|++++..+| .++.++..+|.++...|++++|+.+|++++++.+++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------------ 85 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE------------ 85 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC------------
Confidence 4567889999999999999999999999999 999999999999999999999999999999875543
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLM 301 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~ 301 (370)
..+++++|.++...|++++|+..|+++++++|+++........+..
T Consensus 86 -~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 131 (142)
T 2xcb_A 86 -PRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGA 131 (142)
T ss_dssp -THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHH
Confidence 4567889999999999999999999999999988766555444443
No 114
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.55 E-value=6.9e-14 Score=109.51 Aligned_cols=117 Identities=16% Similarity=0.112 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGN-GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEV 252 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p 252 (370)
...++.+|.++...|++++|+..|++++ .- ..+..++..+|.++...|++++|+.+|++++++.+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al--~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---------- 83 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAI--KRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF---------- 83 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHH--TTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH--HcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc----------
Confidence 5678899999999999999999999985 42 2467889999999999999999999999999764331
Q ss_pred HHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q 017532 253 EFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRD 305 (370)
Q Consensus 253 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~ 305 (370)
..++.++|.++...|++++|+..|++++..+|.+..++.+++.++...|+
T Consensus 84 ---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 84 ---IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred ---hHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 56788999999999999999999999999999999999999999988774
No 115
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.55 E-value=3.4e-14 Score=118.24 Aligned_cols=158 Identities=11% Similarity=-0.031 Sum_probs=126.8
Q ss_pred HHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 017532 126 YAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGN 205 (370)
Q Consensus 126 ~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 205 (370)
.+......|++++|+..+..++...+.. ..+++.+|.++...|++++|+..+++++...|
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~P~~--------------------~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p 71 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDELQSR--------------------GDVKLAKADCLLETKQFELAQELLATIPLEYQ 71 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHHHTS--------------------HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCc--------------------HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC
Confidence 3444467788888888777765433322 25667899999999999999999999999888
Q ss_pred CCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHh
Q 017532 206 GLDPILVSKLGFIQM-QVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIE 284 (370)
Q Consensus 206 ~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~ 284 (370)
++.....++.+.. ..++..+|+..|++++++.|++ ..+++++|.++...|++++|+..|+++++
T Consensus 72 --~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~-------------~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 136 (176)
T 2r5s_A 72 --DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDN-------------FELACELAVQYNQVGRDEEALELLWNILK 136 (176)
T ss_dssp --CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred --ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCC-------------HHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 4555555565533 3334456899999999765442 56788999999999999999999999999
Q ss_pred hCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 017532 285 RDYND--IVAINNKALCLMYLRDLSDSIKVLENALE 318 (370)
Q Consensus 285 ~~p~~--~~~~~nla~~~~~~g~~~~A~~~l~~al~ 318 (370)
.+|+. ..++.++|.++...|+.++|+..|++++.
T Consensus 137 ~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 137 VNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp TCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred hCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 99875 67999999999999999999999999875
No 116
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.55 E-value=6.3e-14 Score=113.41 Aligned_cols=105 Identities=15% Similarity=-0.009 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
.+++.+|..+...|+|++|+..|++++..+| .++.+++.+|.++...|++++|+..|++++++.+++
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------------ 88 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE------------ 88 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------------
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC------------
Confidence 4567899999999999999999999999999 999999999999999999999999999999875543
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAI 293 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~ 293 (370)
..+++++|.++...|++++|+..|+++++++|+++...
T Consensus 89 -~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 89 -PRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp -THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred -chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 55688899999999999999999999999999877543
No 117
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.55 E-value=1.4e-13 Score=116.53 Aligned_cols=128 Identities=11% Similarity=-0.026 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDP----------------ILVSKLGFIQMQVGDLEGAKKSFNRVEEM 238 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~----------------~~~~~lg~~~~~~g~~~~A~~~~~~a~~l 238 (370)
..+..+|..++..|+|++|+..|++++...| .++ .++..+|.++...|++++|+.+|++++++
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFI-HTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT-TCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh-cccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 4556889999999999999999999999988 665 88999999999999999999999999976
Q ss_pred hhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHH-HHHHHH
Q 017532 239 LNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSI-KVLENA 316 (370)
Q Consensus 239 ~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~-~~l~~a 316 (370)
.+.. ..+++.+|.+++..|++++|+..|+++++++|++..++.+++.++...++..++. ..+.++
T Consensus 118 ~p~~-------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 118 DKNN-------------VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp STTC-------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred Cccc-------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4432 5678899999999999999999999999999999999999999999998888776 444443
No 118
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.55 E-value=1.4e-13 Score=125.12 Aligned_cols=170 Identities=9% Similarity=0.000 Sum_probs=133.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHH
Q 017532 181 IGYHLSSKEYNVCFDLMNESIGRGNG-LD----PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFR 255 (370)
Q Consensus 181 a~~~~~~g~~~~A~~~~~~~l~~~~~-~~----~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~ 255 (370)
+.++...|++++|+..|.+++...+. .+ ..++..+|.+|..+|++++|+.+|++++++.+.. .++...
T Consensus 43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~-------g~~~~~ 115 (307)
T 2ifu_A 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN-------GTPDTA 115 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTT-------TCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc-------CCHHHH
Confidence 45677789999999999999887651 11 4577899999999999999999999999987653 234333
Q ss_pred HHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcch---h
Q 017532 256 NLVSRNKALIYLVGKDYVSAVREYEECIERDYND------IVAINNKALCLMYLRDLSDSIKVLENALERVPTVAL---N 326 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~------~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~---~ 326 (370)
..++.++|.++.. |++++|+.+|++++++.|.. ..+++++|.++..+|++++|+.+|++++++.|+... .
T Consensus 116 a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 194 (307)
T 2ifu_A 116 AMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTC 194 (307)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHH
Confidence 7788999999999 99999999999999987643 578999999999999999999999999998765321 1
Q ss_pred HHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCC
Q 017532 327 ETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPD 361 (370)
Q Consensus 327 ~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d 361 (370)
...+++++.+|.. .+..+.....++... ..|+
T Consensus 195 ~~~~~~~g~~~~~--~g~~~~A~~~~~~al-~~p~ 226 (307)
T 2ifu_A 195 YKKCIAQVLVQLH--RADYVAAQKCVRESY-SIPG 226 (307)
T ss_dssp HHHHHHHHHHHHH--TTCHHHHHHHHHHHT-TSTT
T ss_pred HHHHHHHHHHHHH--cCCHHHHHHHHHHHh-CCCC
Confidence 2356677777653 234566666666555 4443
No 119
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.55 E-value=9.8e-12 Score=121.52 Aligned_cols=167 Identities=13% Similarity=0.061 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017532 174 IFVLNCLIGYHLS-------SKEYN-------VCFDLMNESIG-RGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEM 238 (370)
Q Consensus 174 ~~~~~~la~~~~~-------~g~~~-------~A~~~~~~~l~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l 238 (370)
..+++.+|..+.. .|+++ +|+.+|+++++ ..| .+..++..+|.++...|++++|...|++++++
T Consensus 272 ~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p-~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~ 350 (530)
T 2ooe_A 272 PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 350 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc
Confidence 4567777777775 68877 89999999997 788 88999999999999999999999999999975
Q ss_pred hhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHhCCHHHHHHHHHHHH
Q 017532 239 LNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALC-LMYLRDLSDSIKVLENAL 317 (370)
Q Consensus 239 ~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~-~~~~g~~~~A~~~l~~al 317 (370)
.+. ++ ..+|.+.|.++...|++++|++.|+++++..|.+...+...+.+ +...|++++|+..|++++
T Consensus 351 ~p~---------~~---~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al 418 (530)
T 2ooe_A 351 EDI---------DP---TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGL 418 (530)
T ss_dssp SSS---------CH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred ccc---------Cc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 332 22 34677778777778888888888888887777766666555543 335788888888888888
Q ss_pred HhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhh
Q 017532 318 ERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRV 358 (370)
Q Consensus 318 ~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~ 358 (370)
+.+|++ ..++.+++.++. ..+..+..+.+++.....
T Consensus 419 ~~~p~~---~~~~~~~~~~~~--~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 419 KKYGDI---PEYVLAYIDYLS--HLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHTTC---HHHHHHHHHHHT--TTTCHHHHHHHHHHHHHS
T ss_pred HHCCCC---HHHHHHHHHHHH--hCCCHhhHHHHHHHHHhc
Confidence 888776 566677776654 334456666666655444
No 120
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.55 E-value=1.4e-13 Score=124.26 Aligned_cols=139 Identities=15% Similarity=0.128 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCc
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLD------PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGL 248 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~------~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~ 248 (370)
..++.+|.++...|++++|+..+++++...+ .. ..+++.+|.+|...|++++|+.+|++++.+....
T Consensus 116 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~------ 188 (293)
T 2qfc_A 116 QWQYYVAAYVLKKVDYEYCILELKKLLNQQL-TGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL------ 188 (293)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHTTCC-CSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS------
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc------
Confidence 3456788899999999999999999997654 22 4578999999999999999999999999775543
Q ss_pred cchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHhC
Q 017532 249 LSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYN------DIVAINNKALCLMYLRDLSDS-IKVLENALERV 320 (370)
Q Consensus 249 ~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~------~~~~~~nla~~~~~~g~~~~A-~~~l~~al~~~ 320 (370)
..++.....++.++|.++..+|++++|+.+|++++++.+. ...+++++|.++...|++++| ..++++++...
T Consensus 189 ~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 189 HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 2234332478999999999999999999999999987532 268999999999999999999 78899998753
No 121
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.55 E-value=4e-15 Score=143.10 Aligned_cols=152 Identities=14% Similarity=0.125 Sum_probs=121.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCcc---CCccchHHHHHHHHHhH
Q 017532 186 SSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFE---DGLLSEVEFRNLVSRNK 262 (370)
Q Consensus 186 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~---~~~~~~p~~~~~~~~~~ 262 (370)
..+++++|+..++.++...| .....+..+|.++++.|++++|+..|++++++.+..... ......+.. ..++.++
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~-~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~-~~~~~nl 323 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKL-EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFL-LAAFLNL 323 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHH-HHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHH-HHHHHHH
Confidence 34566777777777777777 777888899999999999999999999999887663100 000012222 6789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccC
Q 017532 263 ALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYV 342 (370)
Q Consensus 263 g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~ 342 (370)
|.+++.+|+|++|+..|+++++++|+++.+++++|.++..+|++++|+..|+++++++|++ ..+..+++.++....+
T Consensus 324 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~---~~a~~~l~~~~~~~~~ 400 (457)
T 1kt0_A 324 AMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN---KAARLQISMCQKKAKE 400 (457)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988 7788899988875544
No 122
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.54 E-value=1.7e-12 Score=125.63 Aligned_cols=186 Identities=15% Similarity=0.056 Sum_probs=144.6
Q ss_pred cCCccchHHHHHHHHHHHHHH----HHH-H-h----hHhhHHhHHHHHHHH----HHHHHHHHHHHHhc-----CCHHHH
Q 017532 133 LSNRQVGLDRFYELLDFVREK----LAR-K-L----AEKLEESVKSWKKRE----IFVLNCLIGYHLSS-----KEYNVC 193 (370)
Q Consensus 133 ~g~~~~al~~l~~ll~~~~~~----~~~-~-~----~~~~~~~~~~~~~~~----~~~~~~la~~~~~~-----g~~~~A 193 (370)
.++..+|+..+...+...... +.. . . ......++..++... ..+++.+|.++... +++++|
T Consensus 236 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A 315 (490)
T 2xm6_A 236 TQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQA 315 (490)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHH
Confidence 577788888777654321100 100 0 0 122344555554443 67888999999987 999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHH--
Q 017532 194 FDLMNESIGRGNGLDPILVSKLGFIQMQVG---DLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLV-- 268 (370)
Q Consensus 194 ~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~-- 268 (370)
+.+|+++++.+ ++.+++.+|.++...| ++++|+.+|+++.+. .+ ..+++++|.++..
T Consensus 316 ~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~-----------~~----~~a~~~Lg~~y~~g~ 377 (490)
T 2xm6_A 316 ISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK-----------GE----KAAQFNLGNALLQGK 377 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-----------TC----HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-----------CC----HHHHHHHHHHHHcCC
Confidence 99999999864 4788999999999977 899999999999963 12 4568889999999
Q ss_pred --cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Q 017532 269 --GKDYVSAVREYEECIERDYNDIVAINNKALCLMY----LRDLSDSIKVLENALERVPTVALNETLVVNLCSMYE 338 (370)
Q Consensus 269 --~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~----~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lye 338 (370)
.+++++|+.+|+++++.+ ++.+++++|.++.. .+++++|+..|+++++.+|+........++++.++.
T Consensus 378 g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~ 451 (490)
T 2xm6_A 378 GVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTA 451 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCH
T ss_pred CCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCH
Confidence 999999999999999864 68999999999999 899999999999999999652222777888888876
No 123
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.54 E-value=2e-13 Score=107.92 Aligned_cols=119 Identities=14% Similarity=0.097 Sum_probs=101.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHH
Q 017532 204 GNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECI 283 (370)
Q Consensus 204 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l 283 (370)
.+ .++..+..+|.++...|++++|+.+|++++++.+.. ..++.++|.+++..|++++|+..|++++
T Consensus 5 ~~-~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~-------------~~~~~~l~~~~~~~~~~~~A~~~~~~al 70 (137)
T 3q49_B 5 KS-PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV-------------AVYYTNRALCYLKMQQPEQALADCRRAL 70 (137)
T ss_dssp -C-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cc-ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc-------------HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 45 678899999999999999999999999999765442 5678899999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcc--hhHHHHHHHHHH
Q 017532 284 ERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVA--LNETLVVNLCSM 336 (370)
Q Consensus 284 ~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~--~~~~~~~nl~~l 336 (370)
..+|+++.+++++|.++...|++++|+..|+++++.+|+.. ....+...+..+
T Consensus 71 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~ 125 (137)
T 3q49_B 71 ELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 125 (137)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHH
T ss_pred HhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988721 124444444444
No 124
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.54 E-value=4.1e-13 Score=102.45 Aligned_cols=113 Identities=16% Similarity=0.205 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017532 209 PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYN 288 (370)
Q Consensus 209 ~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~ 288 (370)
+..+..+|.++...|++++|+..|++++...+.. ..++..+|.++...|++++|+..|+++++.+|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 70 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN-------------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 70 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc-------------HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc
Confidence 4567777888888888888888888887654331 445677888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Q 017532 289 DIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMY 337 (370)
Q Consensus 289 ~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~ly 337 (370)
++.+++++|.++...|++++|++.++++++.+|++ ..+..+++.+.
T Consensus 71 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~ 116 (118)
T 1elw_A 71 WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN---PQLKEGLQNME 116 (118)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC---HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC---HHHHHHHHHhh
Confidence 88888888888888888888888888888888876 56666666553
No 125
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.53 E-value=1.8e-13 Score=110.36 Aligned_cols=142 Identities=13% Similarity=0.059 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCc
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNG-LD----PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGL 248 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-~~----~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~ 248 (370)
+.++..+|.++...|++++|+..+++++...+. .+ ..++..+|.++...|++++|+.+|++++++.+..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~------ 82 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL------ 82 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh------
Confidence 467789999999999999999999999987551 11 2477899999999999999999999999987663
Q ss_pred cchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 249 LSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDY------NDIVAINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 249 ~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p------~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
.++.....++.++|.++...|++++|+..|+++++..+ ....++.++|.++...|++++|++.++++++...+
T Consensus 83 -~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 83 -KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred -CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 23333377889999999999999999999999997732 22468899999999999999999999999987543
No 126
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.53 E-value=6.4e-13 Score=102.36 Aligned_cols=113 Identities=22% Similarity=0.197 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017532 209 PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYN 288 (370)
Q Consensus 209 ~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~ 288 (370)
...++.+|.++...|++++|++.|+++++..+.. ..++..+|.++...|++++|+..|++++..+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 75 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc-------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc
Confidence 4455555666666666666666666665432221 234455566666666666666666666666666
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Q 017532 289 DIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMY 337 (370)
Q Consensus 289 ~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~ly 337 (370)
++.+++++|.++...|++++|+..++++++.+|+. ..+..+++.++
T Consensus 76 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~ 121 (125)
T 1na0_A 76 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---AEAKQNLGNAK 121 (125)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHH
Confidence 66666666666666666666666666666666654 45555555554
No 127
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.53 E-value=6e-13 Score=108.40 Aligned_cols=131 Identities=15% Similarity=0.109 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017532 209 PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYN 288 (370)
Q Consensus 209 ~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~ 288 (370)
+..+..+|.++...|++++|+..|++++++.+.. ..++.++|.++...|++++|+..|++++..+|.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~-------------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 79 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSN-------------AIYYGNRSLAYLRTECYGYALGDATRAIELDKK 79 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 4677899999999999999999999999764432 567888999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHH
Q 017532 289 DIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWI 355 (370)
Q Consensus 289 ~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~ 355 (370)
++.+++++|.++...|++++|++.|+++++.+|+. .....++.....+...+..++...+....
T Consensus 80 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 80 YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD---KDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 99999999999999999999999999999999987 55554444443322333445555555544
No 128
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.53 E-value=2.9e-13 Score=105.20 Aligned_cols=117 Identities=24% Similarity=0.192 Sum_probs=105.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017532 207 LDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD 286 (370)
Q Consensus 207 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~ 286 (370)
.+...+..+|.++...|++++|+..|++++...+.. ..++..+|.++...|++++|+..|++++..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 76 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN-------------AVYFCNRAAAYSKLGNYAGAVQDCERAICID 76 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC-------------HHHHHHHHHHHHHhhchHHHHHHHHHHHhcC
Confidence 456788999999999999999999999999764432 5568889999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHh
Q 017532 287 YNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYEL 339 (370)
Q Consensus 287 p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel 339 (370)
|+++.+++++|.++...|++++|+..++++++.+|+. ....++++.++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~ 126 (131)
T 2vyi_A 77 PAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDN---ETYKSNLKIAELK 126 (131)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccc---hHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987 7788888888764
No 129
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.53 E-value=2.9e-13 Score=120.15 Aligned_cols=213 Identities=8% Similarity=-0.019 Sum_probs=160.3
Q ss_pred HcCChHHHHHHHHHhhhccccCCchHHHHHHHHH------HHHHhhhcCHHHHHHHhhhcCCCCCCCCccccc-CCCCCC
Q 017532 40 TRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYN------TLALMKLRRFDEAQQELDSLEDFNSSGYQYETY-PHIYPN 112 (370)
Q Consensus 40 ~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~------~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~-~~~~~~ 112 (370)
..+++..|...+.++... +|.....|...- ...|.+++++.+++..+.....+.+..+-.... ..+|
T Consensus 18 ~~~d~~~A~~~F~~a~~~----dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y-- 91 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNY----DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLY-- 91 (282)
T ss_dssp TTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTT--
T ss_pred cCCCHHHHHHHHHHHHHh----ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcc--
Confidence 589999999999998654 587544444321 467888999999998888887776422211111 0000
Q ss_pred CCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHH
Q 017532 113 RTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNV 192 (370)
Q Consensus 113 ~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 192 (370)
|+..-.+..-. .+...++..+...|+|++
T Consensus 92 ---------------------~~~~~~v~~r~------------------------------dl~LayA~~L~~~g~y~e 120 (282)
T 4f3v_A 92 ---------------------GDITYPVTSPL------------------------------AITMGFAACEAAQGNYAD 120 (282)
T ss_dssp ---------------------CCCEEECSSHH------------------------------HHHHHHHHHHHHHTCHHH
T ss_pred ---------------------cccccccCCHh------------------------------HHHHHHHHHHHHCCCHHH
Confidence 11111110000 122345667888899999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCH
Q 017532 193 CFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDY 272 (370)
Q Consensus 193 A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~ 272 (370)
|...|+.++..+| .+. ..+.+|.++++.|++++|+.+|+++.. ..+|.....+++++|.++...|++
T Consensus 121 A~~~l~~~~~~~p-~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~-----------~~d~~~~~~a~~~LG~al~~LG~~ 187 (282)
T 4f3v_A 121 AMEALEAAPVAGS-EHL-VAWMKAVVYGAAERWTDVIDQVKSAGK-----------WPDKFLAGAAGVAHGVAAANLALF 187 (282)
T ss_dssp HHHHHTSSCCTTC-HHH-HHHHHHHHHHHTTCHHHHHHHHTTGGG-----------CSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhcCC-chH-HHHHHHHHHHHcCCHHHHHHHHHHhhc-----------cCCcccHHHHHHHHHHHHHHCCCH
Confidence 9999999999888 777 889999999999999999999987753 224443356889999999999999
Q ss_pred HHHHHHHHHHHhhC--CC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 273 VSAVREYEECIERD--YN-DIVAINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 273 ~eA~~~~~~~l~~~--p~-~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
++|+.+|++++... |. .+.+++++|.++..+|+.++|+..|++++..+|+
T Consensus 188 ~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 188 TEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 99999999998654 55 5679999999999999999999999999999997
No 130
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.53 E-value=6.1e-14 Score=126.37 Aligned_cols=131 Identities=7% Similarity=-0.169 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
..+++.+|.++...|++++|+..+++++..+| +........+..+...|+.++|+..|++++++.|++
T Consensus 151 ~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p-~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~----------- 218 (287)
T 3qou_A 151 GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ-DTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPED----------- 218 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC-SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTC-----------
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc-chHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCcc-----------
Confidence 46788999999999999999999999999999 777777777888889999999999999999765542
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERDYND--IVAINNKALCLMYLRDLSDSIKVLENALE 318 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~--~~~~~nla~~~~~~g~~~~A~~~l~~al~ 318 (370)
..+++++|.++...|++++|+..|++++..+|++ ..++.+++.++...|+.++|+..|++++.
T Consensus 219 --~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 219 --AALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 6678999999999999999999999999999998 89999999999999999999999999875
No 131
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.53 E-value=7.6e-13 Score=119.77 Aligned_cols=238 Identities=10% Similarity=-0.020 Sum_probs=176.2
Q ss_pred ChHhHHHHHHcCCh-HHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhc--CHHHHHHHhhhcCCCCCCCCcccccC
Q 017532 31 DLASLQDLATRGSW-RTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLR--RFDEAQQELDSLEDFNSSGYQYETYP 107 (370)
Q Consensus 31 ~~~~l~~l~~~g~~-~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~--~~~~A~~~~~~~~~l~~~~~~~~~~~ 107 (370)
....+..+.++|.+ ++|++++++++.. +|.. .+.|.+|..++..++ ++++++..++.+...++-.+
T Consensus 35 ~~~~~~a~~~~~e~s~~aL~~t~~~L~~----nP~~-~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y------ 103 (306)
T 3dra_A 35 IMGLLLALMKAEEYSERALHITELGINE----LASH-YTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNY------ 103 (306)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHH----CTTC-HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCC------
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH----CcHH-HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccH------
Confidence 34567777888888 5899999997654 6874 667778899999999 99999999999975553221
Q ss_pred CCCCCCCCcccchhHHHH-HHHcCccc---CCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHH
Q 017532 108 HIYPNRTGSMVPFSLRWL-YAVLPIKL---SNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGY 183 (370)
Q Consensus 108 ~~~~~~~~~~~~~~~r~l-~a~~~~~~---g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 183 (370)
..|..|-. ...+.... ++..++++.+..++...+ .... +++.++.+
T Consensus 104 ----------~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~p------------kny~--------aW~~R~~v 153 (306)
T 3dra_A 104 ----------QIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDP------------KNHH--------VWSYRKWL 153 (306)
T ss_dssp ----------HHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCT------------TCHH--------HHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCC------------CCHH--------HHHHHHHH
Confidence 23333322 21111122 455555554444442221 1223 33456667
Q ss_pred HHhcCCHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHHhhcCCccCCccchHHHH
Q 017532 184 HLSSKEYN--VCFDLMNESIGRGNGLDPILVSKLGFIQMQVGD------LEGAKKSFNRVEEMLNEGKFEDGLLSEVEFR 255 (370)
Q Consensus 184 ~~~~g~~~--~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~------~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~ 255 (370)
+...|+++ +++..+.++++.+| .+..+|+..+.+....|+ ++++++++++++.+.+.+
T Consensus 154 l~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n------------- 219 (306)
T 3dra_A 154 VDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQN------------- 219 (306)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSC-------------
T ss_pred HHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCC-------------
Confidence 77778888 99999999999999 999999999999999887 899999999999765543
Q ss_pred HHHHHhHHHHHHHcCCHHHH-HHHHHHHHhhC---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-hCCCc
Q 017532 256 NLVSRNKALIYLVGKDYVSA-VREYEECIERD---YNDIVAINNKALCLMYLRDLSDSIKVLENALE-RVPTV 323 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~~~eA-~~~~~~~l~~~---p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~-~~p~~ 323 (370)
..+|..++.++...|+..++ .+.+++++.++ |.++.++..+|.++...|+.++|+++|+.+.+ .+|-.
T Consensus 220 ~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir 292 (306)
T 3dra_A 220 PSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIR 292 (306)
T ss_dssp HHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGG
T ss_pred ccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHH
Confidence 56788899999999986664 45677777766 88999999999999999999999999999987 68864
No 132
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.52 E-value=9.2e-13 Score=101.45 Aligned_cols=117 Identities=16% Similarity=0.121 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
..+++.+|.++...|++++|+..+++++...| .+..++..+|.++...|++++|+..|++++++.+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----------- 76 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----------- 76 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc-----------
Confidence 56788999999999999999999999999999 899999999999999999999999999999764432
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLR 304 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g 304 (370)
...+..+|.++...|++++|+..|++++..+|+++.++.+++.++...|
T Consensus 77 --~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 77 --AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 4567889999999999999999999999999999999999999987765
No 133
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.52 E-value=1.8e-12 Score=100.98 Aligned_cols=134 Identities=20% Similarity=0.153 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 017532 210 ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYND 289 (370)
Q Consensus 210 ~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~ 289 (370)
.+++.+|.++...|++++|+..|+++++..+.. ...+..+|.++...|++++|+..|++++..+|.+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 68 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS-------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 68 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcc-------------hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc
Confidence 467889999999999999999999999753331 4567789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCC
Q 017532 290 IVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPD 361 (370)
Q Consensus 290 ~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d 361 (370)
+.+++++|.++...|++++|++.+++++...|.. ...+++++.+|.. .+..+....++.......|+
T Consensus 69 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~--~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 69 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---AEAWYNLGNAYYK--QGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHT--TTCHHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHH--HccHHHHHHHHHHHHccCCC
Confidence 9999999999999999999999999999999987 7788899998874 44467777777766665554
No 134
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.52 E-value=2.6e-12 Score=115.73 Aligned_cols=157 Identities=13% Similarity=0.065 Sum_probs=127.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccch
Q 017532 178 NCLIGYHLSSKEYNVCFDLMNESIGRGNGLDP------ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSE 251 (370)
Q Consensus 178 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~------~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~ 251 (370)
...+..+...|+|++|+..++++++..+ ... ..++.+|.++...|++++|+.+|++++.+.... .+
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-------~~ 150 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEE-YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG-------ID 150 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS-------SC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhcccc-CChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC-------Cc
Confidence 4566788899999999999999999877 443 335678999999999999999999999765442 12
Q ss_pred HHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHH---hhCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC--
Q 017532 252 VEFRNLVSRNKALIYLVGKDYVSAVREYEECI---ERDYNDI----VAINNKALCLMYLRDLSDSIKVLENALERVPT-- 322 (370)
Q Consensus 252 p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l---~~~p~~~----~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~-- 322 (370)
+.....++.++|.+|...|++++|+.+|++++ +..|++. .+++|+|.++...|++++|+.+++++++..++
T Consensus 151 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~ 230 (293)
T 2qfc_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN 230 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcC
Confidence 22226688999999999999999999999999 4456643 68999999999999999999999999987543
Q ss_pred -cchhHHHHHHHHHHHHhccC
Q 017532 323 -VALNETLVVNLCSMYELAYV 342 (370)
Q Consensus 323 -~~~~~~~~~nl~~lyel~~~ 342 (370)
......+.++++.+|....+
T Consensus 231 ~~~~~~~~~~~lg~~y~~~g~ 251 (293)
T 2qfc_A 231 SMALIGQLYYQRGECLRKLEY 251 (293)
T ss_dssp BCSSHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHHcCC
Confidence 12235778999999986544
No 135
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.52 E-value=1.2e-13 Score=113.12 Aligned_cols=119 Identities=12% Similarity=0.091 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGR------------------GNGLDPILVSKLGFIQMQVGDLEGAKKSFNRV 235 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 235 (370)
+..+..+|..++..|+|++|+..|++++.. +| ....+++++|.++..+|++++|+.+|+++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDR-KNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHH-THHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHH-HHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 456678999999999999999999999998 55 56688999999999999999999999999
Q ss_pred HHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHhCCH
Q 017532 236 EEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI-VAINNKALCLMYLRDL 306 (370)
Q Consensus 236 ~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~-~~~~nla~~~~~~g~~ 306 (370)
+++.+.. ..+++.+|.+++..|++++|+..|+++++++|++. .+...++.+....++.
T Consensus 90 l~~~p~~-------------~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~ 148 (162)
T 3rkv_A 90 LKREETN-------------EKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEK 148 (162)
T ss_dssp HHHSTTC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCcc-------------hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 9765442 67789999999999999999999999999999998 6677777766555443
No 136
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.51 E-value=4.2e-13 Score=121.01 Aligned_cols=170 Identities=14% Similarity=0.098 Sum_probs=130.5
Q ss_pred cccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC-
Q 017532 131 IKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNG-LD- 208 (370)
Q Consensus 131 ~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-~~- 208 (370)
...|+.++|+..+...+...... . . . ......+..+|.++...|++++|+..+++++...+. .+
T Consensus 86 ~~~~~y~~a~~~~~~~l~~~~~~------~---~-~----~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~ 151 (293)
T 3u3w_A 86 CKQKRYKEIYNKVWNELKKEEYH------P---E-F----QQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCCC------H---H-H----HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCT
T ss_pred HHHhhHHHHHHHHHHHhccccCC------h---H-H----HHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccH
Confidence 55677777777666654311100 0 0 0 011244556888999999999999999999986541 22
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh
Q 017532 209 ---PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIER 285 (370)
Q Consensus 209 ---~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~ 285 (370)
..++..+|.+|...|++++|+.+|+++++...... ...+.. ..++.++|.+++.+|++++|+++|++++++
T Consensus 152 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~-----~~~~~~-~~~~~nlg~~y~~~~~y~~A~~~~~~al~~ 225 (293)
T 3u3w_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH-----DNEEFD-VKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSS-----CCHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc-----cchhHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34689999999999999999999999998766531 223444 788999999999999999999999999988
Q ss_pred CCCC------HHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhC
Q 017532 286 DYND------IVAINNKALCLMYLRD-LSDSIKVLENALERV 320 (370)
Q Consensus 286 ~p~~------~~~~~nla~~~~~~g~-~~~A~~~l~~al~~~ 320 (370)
.+.. ..+++++|.++..+|+ +++|+++|++++.+.
T Consensus 226 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 226 SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 6433 7899999999999995 699999999998763
No 137
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.51 E-value=7.6e-13 Score=100.95 Aligned_cols=112 Identities=16% Similarity=0.050 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
..++.+|..+...|++++|+..+++++...| .++.++..+|.++...|++++|+..|++++++.+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------------ 71 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW------------ 71 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------------
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc------------
Confidence 5667899999999999999999999999999 999999999999999999999999999999764432
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCL 300 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~ 300 (370)
..++.++|.++...|++++|+..|+++++.+|+++.++.+++.+.
T Consensus 72 -~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 72 -GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 556888999999999999999999999999999999999888764
No 138
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=7.1e-13 Score=105.79 Aligned_cols=119 Identities=21% Similarity=0.234 Sum_probs=104.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017532 207 LDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD 286 (370)
Q Consensus 207 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~ 286 (370)
.+...+..+|..+...|++++|+.+|++++++.++ ++.. ..++.++|.++...|++++|+..|++++..+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~---------~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 95 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDAT---------PQDQ-AVLHRNRAACHLKLEDYDKAETEASKAIEKD 95 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC---------HHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc---------chHH-HHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence 67788999999999999999999999999964322 3223 6778899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Q 017532 287 YNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYE 338 (370)
Q Consensus 287 p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lye 338 (370)
|+++.+++++|.++...|++++|+..|+++++.+|++ ..+...+..+.+
T Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~ 144 (148)
T 2dba_A 96 GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKN---KVFQEALRNISG 144 (148)
T ss_dssp SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSC---HHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHh
Confidence 9999999999999999999999999999999999987 667777776654
No 139
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.51 E-value=7.4e-14 Score=112.89 Aligned_cols=116 Identities=12% Similarity=0.007 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGL-------DPI-----LVSKLGFIQMQVGDLEGAKKSFNRVEEMLNE 241 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~-------~~~-----~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~ 241 (370)
+..+.++|..+...|+|++|+..|+++++..| . +.. +|+++|.++..+|++++|+.+|++++++...
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p-~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISH-TMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT-TSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC-CCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 45667899999999999999999999999999 6 443 8999999999999999999999999987221
Q ss_pred CCccCCccchHHHHHHHH----HhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 017532 242 GKFEDGLLSEVEFRNLVS----RNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNK 296 (370)
Q Consensus 242 ~~~~~~~~~~p~~~~~~~----~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nl 296 (370)
. ...+|+. ..+| +++|.++..+|++++|+..|+++++++|++.....-+
T Consensus 90 ~-----~e~~pd~-~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 90 R-----GELNQDE-GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp H-----CCTTSTH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred c-----ccCCCch-HHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 0 0235555 7778 9999999999999999999999999999876544333
No 140
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.50 E-value=3.1e-14 Score=127.93 Aligned_cols=145 Identities=9% Similarity=-0.016 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
..++.+|..+...|+|++|+..|++++..+| .++.+++.+|.++..+|++++|+..|++++++. |+.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------------p~~ 71 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD------------GQS 71 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC------------TTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------------CCC
Confidence 4567899999999999999999999999999 999999999999999999999999999999543 333
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----HH--------------------------HHHHHHHHHHh
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI-----VA--------------------------INNKALCLMYL 303 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~-----~~--------------------------~~nla~~~~~~ 303 (370)
..++.++|.++...|++++|+..|+++++++|++. .+ ...++. +..
T Consensus 72 -~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~--l~~ 148 (281)
T 2c2l_A 72 -VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTR--LIA 148 (281)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHH--HHH
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH--HHH
Confidence 66788999999999999999999999999988652 11 111222 247
Q ss_pred CCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Q 017532 304 RDLSDSIKVLENALERVPTVALNETLVVNLCSMYE 338 (370)
Q Consensus 304 g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lye 338 (370)
|++++|++.++++++.+|+. ..+...+..++.
T Consensus 149 ~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~ 180 (281)
T 2c2l_A 149 AERERELEECQRNHEGHEDD---GHIRAQQACIEA 180 (281)
T ss_dssp HHHHHHHTTTSGGGTTTSCH---HHHTHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccccch---hhhhhHHHHHHH
Confidence 89999999999999999986 555566666554
No 141
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.50 E-value=2.2e-13 Score=106.24 Aligned_cols=101 Identities=9% Similarity=-0.147 Sum_probs=87.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHH
Q 017532 177 LNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRN 256 (370)
Q Consensus 177 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~ 256 (370)
++.+|..+...|++++|+..|+++++.+| .++.+++.+|.++...|++++|+..|++++++.|+. .
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-------------~ 85 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD-------------I 85 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------H
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------------H
Confidence 35678889999999999999999999999 999999999999999999999999999999775542 5
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 017532 257 LVSRNKALIYLVGKDYVSAVREYEECIERDYNDIV 291 (370)
Q Consensus 257 ~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~ 291 (370)
.++.++|.++...|++++|+..|+++++.+|++..
T Consensus 86 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 86 AVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence 67889999999999999999999999999998653
No 142
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.49 E-value=1.4e-12 Score=125.13 Aligned_cols=138 Identities=12% Similarity=0.016 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHhhcCCccCC
Q 017532 175 FVLNCLIGYHLSSK---EYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQV----GDLEGAKKSFNRVEEMLNEGKFEDG 247 (370)
Q Consensus 175 ~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~----g~~~~A~~~~~~a~~l~~~~~~~~~ 247 (370)
.+++.+|.+|...| ++++|+..|+++.+.++ .....++.+|.+|... +++++|+.+|+++. +..
T Consensus 177 ~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~----- 247 (452)
T 3e4b_A 177 ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGY----- 247 (452)
T ss_dssp THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGS-----
T ss_pred HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCC-----
Confidence 45666666666666 66777777777776666 6666666666666544 56666666666665 221
Q ss_pred ccchHHHHHHHHHhHHHH-H--HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHh
Q 017532 248 LLSEVEFRNLVSRNKALI-Y--LVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLR-----DLSDSIKVLENALER 319 (370)
Q Consensus 248 ~~~~p~~~~~~~~~~g~~-~--~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g-----~~~~A~~~l~~al~~ 319 (370)
..+++++|.+ + ...+++++|+.+|+++++. .++.+++++|.+|. .| ++++|+..|+++.
T Consensus 248 --------~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-- 314 (452)
T 3e4b_A 248 --------PASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-- 314 (452)
T ss_dssp --------THHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT--
T ss_pred --------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh--
Confidence 3345556655 3 3456666666666666543 35666666666655 44 6666666666665
Q ss_pred CCCcchhHHHHHHHHHHHH
Q 017532 320 VPTVALNETLVVNLCSMYE 338 (370)
Q Consensus 320 ~p~~~~~~~~~~nl~~lye 338 (370)
|.+ ....++|+.+|.
T Consensus 315 -~g~---~~A~~~Lg~~y~ 329 (452)
T 3e4b_A 315 -GRE---VAADYYLGQIYR 329 (452)
T ss_dssp -TTC---HHHHHHHHHHHH
T ss_pred -CCC---HHHHHHHHHHHH
Confidence 444 455666666665
No 143
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.49 E-value=2.1e-13 Score=103.14 Aligned_cols=106 Identities=16% Similarity=0.051 Sum_probs=95.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHH
Q 017532 204 GNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECI 283 (370)
Q Consensus 204 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l 283 (370)
+| .+...+..+|.++...|++++|+.+|++++++.+.. ..++.++|.+++..|++++|+..|++++
T Consensus 2 ~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-------------~~~~~~~a~~~~~~~~~~~A~~~~~~a~ 67 (112)
T 2kck_A 2 VD-QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEE-------------SKYWLMKGKALYNLERYEEAVDCYNYVI 67 (112)
T ss_dssp CC-SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CC-CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC-------------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 45 677788899999999999999999999999765432 4567889999999999999999999999
Q ss_pred hhCCC--CHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhCCCc
Q 017532 284 ERDYN--DIVAINNKALCLMYL-RDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 284 ~~~p~--~~~~~~nla~~~~~~-g~~~~A~~~l~~al~~~p~~ 323 (370)
+.+|. +..+++++|.++... |++++|++++++++...|..
T Consensus 68 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 68 NVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 99999 999999999999999 99999999999999999874
No 144
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.49 E-value=9.8e-15 Score=141.09 Aligned_cols=135 Identities=13% Similarity=0.118 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
..++.+|..+...|+|++|+..|+++++.+| .+..+++.+|.++.++|++++|+++|++++++.++ .
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~------------~ 73 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK------------Y 73 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT------------C
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------------C
Confidence 3455677888999999999999999999999 99999999999999999999999999999975433 2
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHHhCCHHHHHHHHH-----------HHHHhCC
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALC--LMYLRDLSDSIKVLE-----------NALERVP 321 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~--~~~~g~~~~A~~~l~-----------~al~~~p 321 (370)
..++.++|.++..+|++++|++.|+++++++|++..++.+++.+ +...|++++|++.++ +++..+|
T Consensus 74 -~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~ 152 (477)
T 1wao_1 74 -IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIED 152 (477)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCT
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccc
Confidence 56788999999999999999999999999999999999999998 888999999999999 8888887
Q ss_pred Cc
Q 017532 322 TV 323 (370)
Q Consensus 322 ~~ 323 (370)
+.
T Consensus 153 ~~ 154 (477)
T 1wao_1 153 EY 154 (477)
T ss_dssp TC
T ss_pred cc
Confidence 64
No 145
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.49 E-value=1.3e-12 Score=101.95 Aligned_cols=103 Identities=13% Similarity=0.131 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCC-
Q 017532 211 LVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYND- 289 (370)
Q Consensus 211 ~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~- 289 (370)
.++.+|.++...|++++|+..|+++++..+++ +.. ..+++.+|.+++..|++++|+..|++++..+|++
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---------~~~-~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~ 73 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNG---------VYT-PNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHD 73 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSS---------TTH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC---------ccc-HHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCc
Confidence 46788999999999999999999999765542 111 3578889999999999999999999999999999
Q ss_pred --HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 290 --IVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 290 --~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
+.+++++|.++...|++++|+..|+++++..|+.
T Consensus 74 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 109 (129)
T 2xev_A 74 KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGS 109 (129)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTS
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 8999999999999999999999999999999987
No 146
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.49 E-value=4e-13 Score=129.09 Aligned_cols=129 Identities=9% Similarity=0.088 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLD---------------PILVSKLGFIQMQVGDLEGAKKSFNRVEEML 239 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~ 239 (370)
..++.+|..++..|+|++|+..|+++++..| .+ ..+++++|.++.++|++++|+.+|++++++.
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p-~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLE-MEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT-TCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc-ccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 5667899999999999999999999999999 66 6899999999999999999999999999765
Q ss_pred hcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHH-HHHHH
Q 017532 240 NEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKV-LENAL 317 (370)
Q Consensus 240 ~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~-l~~al 317 (370)
+++ ..+++++|.+++.+|++++|+..|+++++++|++..++.+++.++...|++++|... +.+++
T Consensus 348 p~~-------------~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 348 SAN-------------EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp TTC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred Ccc-------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 542 677899999999999999999999999999999999999999999999999988754 44443
No 147
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.48 E-value=6.9e-13 Score=104.79 Aligned_cols=116 Identities=10% Similarity=-0.012 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
+..++.+|.++...|+|++|+..|++++..+| .++.++..+|.++...|++++|+..|++++++.++.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~----------- 76 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS----------- 76 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh-----------
Confidence 35677899999999999999999999999999 999999999999999999999999999999765442
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHh
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERDYN-----DIVAINNKALCLMYL 303 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~-----~~~~~~nla~~~~~~ 303 (370)
..++.++|.++...|++++|+..|+++++.+|+ +..+...+..+....
T Consensus 77 --~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~ 129 (137)
T 3q49_B 77 --VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR 129 (137)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999999987 666666666655443
No 148
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.48 E-value=1.6e-11 Score=111.83 Aligned_cols=167 Identities=8% Similarity=-0.082 Sum_probs=130.5
Q ss_pred HHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 177 LNCLIGYHLSSK--EYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGD-LEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 177 ~~~la~~~~~~g--~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
++.++.++...+ ++++++.++.++++.+| .+..+|+..+.+....|. +++++++++++++..+.+
T Consensus 111 W~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N----------- 178 (331)
T 3dss_A 111 WHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN----------- 178 (331)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCC-----------
T ss_pred HHHHHHHHhccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCC-----------
Confidence 345556666667 59999999999999999 999999999999999999 699999999999765543
Q ss_pred HHHHHHHhHHHHHHHc--------------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh-----------CCHHH
Q 017532 254 FRNLVSRNKALIYLVG--------------KDYVSAVREYEECIERDYNDIVAINNKALCLMYL-----------RDLSD 308 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~--------------g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~-----------g~~~~ 308 (370)
..+|.+++.++... +.++++++++.+++..+|+|..+|+.+.-++... +.+++
T Consensus 179 --~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~ 256 (331)
T 3dss_A 179 --YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQS 256 (331)
T ss_dssp --HHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHH
Confidence 56788899998877 6799999999999999999999997544444433 46899
Q ss_pred HHHHHHHHHHhCCCcchhHHHHHHHHHHHHh-ccCCchhhHHHHHHHHhhhCC
Q 017532 309 SIKVLENALERVPTVALNETLVVNLCSMYEL-AYVNHSDIKRTLSSWIGRVAP 360 (370)
Q Consensus 309 A~~~l~~al~~~p~~~~~~~~~~nl~~lyel-~~~~~~~~~~~ll~~~~~~~~ 360 (370)
+++.++++++..|++ .+.+..++.+... ...+..+.-..++.++....|
T Consensus 257 el~~~~elle~~pd~---~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 257 ELESCKELQELEPEN---KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp HHHHHHHHHHHCTTC---HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHhhCccc---chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence 999999999999987 5555555543322 223334555666666666655
No 149
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.48 E-value=7.7e-13 Score=111.63 Aligned_cols=142 Identities=13% Similarity=0.051 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCC
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGR------GNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDG 247 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~ 247 (370)
..++..+|.++...|++++|+..+++++.. .+ ....++..+|.++...|++++|+.+|++++++.+..
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----- 99 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHT-AEHRALHQVGMVERMAGNWDAARRCFLEERELLASL----- 99 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-----
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-----
Confidence 356778999999999999999999999883 23 345678999999999999999999999999987653
Q ss_pred ccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC--CCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 017532 248 LLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD--YNDI----VAINNKALCLMYLRDLSDSIKVLENALERVP 321 (370)
Q Consensus 248 ~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~--p~~~----~~~~nla~~~~~~g~~~~A~~~l~~al~~~p 321 (370)
..++.....++.++|.++...|++++|+.+|++++... ..+. .++.++|.++...|++++|+..+++++++..
T Consensus 100 -~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 100 -PEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -CccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 22342337889999999999999999999999999763 2222 4578999999999999999999999998744
Q ss_pred C
Q 017532 322 T 322 (370)
Q Consensus 322 ~ 322 (370)
.
T Consensus 179 ~ 179 (203)
T 3gw4_A 179 E 179 (203)
T ss_dssp H
T ss_pred H
Confidence 3
No 150
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.48 E-value=5.9e-12 Score=106.10 Aligned_cols=161 Identities=11% Similarity=0.045 Sum_probs=123.9
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHH
Q 017532 185 LSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKAL 264 (370)
Q Consensus 185 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~ 264 (370)
+..|++++|...++.+.. +|.....++..+|.++...|++++|+.+|++++.+.... ...+.. ..++.++|.
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~-~~~~~~l~~ 74 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS------GDHTAE-HRALHQVGM 74 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT------CCHHHH-HHHHHHHHH
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc------CCcHHH-HHHHHHHHH
Confidence 457999999996666554 342667889999999999999999999999999987764 234444 888999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhh---CCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC---cchhHHHHHHHH
Q 017532 265 IYLVGKDYVSAVREYEECIER---DYND----IVAINNKALCLMYLRDLSDSIKVLENALERVPT---VALNETLVVNLC 334 (370)
Q Consensus 265 ~~~~~g~~~eA~~~~~~~l~~---~p~~----~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~---~~~~~~~~~nl~ 334 (370)
++...|++++|+..|+++++. .+++ ..+++++|.++...|++++|+..+++++...+. .......+.+++
T Consensus 75 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 154 (203)
T 3gw4_A 75 VERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLG 154 (203)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 999999999999999999988 4433 467899999999999999999999999976432 212234567899
Q ss_pred HHHHhccCCchhhHHHHHHHH
Q 017532 335 SMYELAYVNHSDIKRTLSSWI 355 (370)
Q Consensus 335 ~lyel~~~~~~~~~~~ll~~~ 355 (370)
.+|.... ..++....++..
T Consensus 155 ~~~~~~g--~~~~A~~~~~~a 173 (203)
T 3gw4_A 155 DLAQQEK--NLLEAQQHWLRA 173 (203)
T ss_dssp HHHHHTT--CHHHHHHHHHHH
T ss_pred HHHHHCc--CHHHHHHHHHHH
Confidence 8887543 355555555433
No 151
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.47 E-value=2.1e-12 Score=116.44 Aligned_cols=155 Identities=14% Similarity=0.087 Sum_probs=124.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchH
Q 017532 179 CLIGYHLSSKEYNVCFDLMNESIGRGNGLDPI------LVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEV 252 (370)
Q Consensus 179 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~------~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p 252 (370)
..+..++..|+|++|+..+++++...+ ..+. .+..+|.++...|++++|+.+|++++.+.... .+.
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~-------~~~ 151 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEE-YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG-------IDV 151 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCC-------SCT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhcccc-CChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccc-------ccH
Confidence 446678889999999999999999777 5543 23458999999999999999999999864442 111
Q ss_pred HHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh-------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc--
Q 017532 253 EFRNLVSRNKALIYLVGKDYVSAVREYEECIER-------DYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV-- 323 (370)
Q Consensus 253 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~-------~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~-- 323 (370)
.....++.++|.+|...|++++|+.+|+++++. .+....+++|+|.++...|++++|+++++++++..+..
T Consensus 152 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~ 231 (293)
T 3u3w_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS 231 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCc
Confidence 122567899999999999999999999999953 12334689999999999999999999999999886442
Q ss_pred -chhHHHHHHHHHHHHhcc
Q 017532 324 -ALNETLVVNLCSMYELAY 341 (370)
Q Consensus 324 -~~~~~~~~nl~~lyel~~ 341 (370)
.....++++++.+|....
T Consensus 232 ~~~~~~~~~~lg~~~~~~g 250 (293)
T 3u3w_A 232 MALIGQLYYQRGECLRKLE 250 (293)
T ss_dssp CTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 233678899999998644
No 152
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.47 E-value=2e-12 Score=100.50 Aligned_cols=122 Identities=9% Similarity=0.111 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
..++.+|.++...|++++|+..+++++...| .++.++..+|.++...|++++|+.+|++++.+.+... ...+..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~ 78 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR-----EDYRQI 78 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST-----TCHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccc-----hhHHHH
Confidence 5677899999999999999999999999999 8999999999999999999999999999998876531 122222
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLR 304 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g 304 (370)
..++.++|.++...|++++|+..|+++++.+| ++.....++.+....+
T Consensus 79 -~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 79 -AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 56788899999999999999999999999988 6888888877765544
No 153
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.46 E-value=2.9e-12 Score=109.16 Aligned_cols=134 Identities=18% Similarity=0.210 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 017532 210 ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYND 289 (370)
Q Consensus 210 ~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~ 289 (370)
..++.+|.++...|++++|+..|++++ ..+ ..++.++|.++...|++++|+..|++++..+|++
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~------------~~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 70 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ------------DPH----SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL 70 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS------------SCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc------------CCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 456788999999999999999999986 112 4578899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcc-------------hhHHHHHHHHHHHHhccCCchhhHHHHHHHHh
Q 017532 290 IVAINNKALCLMYLRDLSDSIKVLENALERVPTVA-------------LNETLVVNLCSMYELAYVNHSDIKRTLSSWIG 356 (370)
Q Consensus 290 ~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~-------------~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~ 356 (370)
+.+++++|.++...|++++|++.|+++++..|++. ....++++++.+|... +..+.....++...
T Consensus 71 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al 148 (213)
T 1hh8_A 71 AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKK--EEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHc--cCHHHHHHHHHHHH
Confidence 99999999999999999999999999999988752 1237889999998754 44677777777666
Q ss_pred hhCCC
Q 017532 357 RVAPD 361 (370)
Q Consensus 357 ~~~~d 361 (370)
...|+
T Consensus 149 ~~~p~ 153 (213)
T 1hh8_A 149 SMKSE 153 (213)
T ss_dssp TTCCS
T ss_pred HcCcc
Confidence 65554
No 154
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.45 E-value=1.7e-12 Score=121.19 Aligned_cols=127 Identities=18% Similarity=0.151 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCc----cCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh
Q 017532 210 ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKF----EDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIER 285 (370)
Q Consensus 210 ~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~----~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~ 285 (370)
..+..+|..++..|++++|+..|++++++.+.... ......+|.. ..++.++|.+++.+|++++|+.+|++++++
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~-~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVA-LSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHH-HHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 44667788888888888888888888765432100 0000145665 788999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhc
Q 017532 286 DYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELA 340 (370)
Q Consensus 286 ~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~ 340 (370)
+|+++.+++++|.++..+|++++|++.|+++++++|++ ..+..+++.++...
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~---~~~~~~l~~~~~~~ 354 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED---KAIQAELLKVKQKI 354 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987 77888888887643
No 155
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.45 E-value=1.1e-13 Score=127.82 Aligned_cols=134 Identities=11% Similarity=0.028 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
..++.+|..++..|+|++|+..|++++...| .+. .+...|+++++...+.
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p-~~~--------~~~~~~~~~~~~~~l~--------------------- 229 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMG-DDF--------MFQLYGKYQDMALAVK--------------------- 229 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSC-HHH--------HHTCCHHHHHHHHHHH---------------------
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc-cch--------hhhhcccHHHHHHHHH---------------------
Confidence 4566889999999999999999999999988 443 1223344443332210
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHH
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLC 334 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~ 334 (370)
..++.++|.+++..|+|++|+.+|+++++++|++..+++++|.++..+|++++|+..|+++++++|++ ..+..+|.
T Consensus 230 -~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~---~~a~~~L~ 305 (338)
T 2if4_A 230 -NPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD---KAIRRELR 305 (338)
T ss_dssp -THHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---HHHHHHHH
Confidence 23456677777777777777777777777777777777777777777777777777777777777765 56666666
Q ss_pred HHHHhccC
Q 017532 335 SMYELAYV 342 (370)
Q Consensus 335 ~lyel~~~ 342 (370)
.+......
T Consensus 306 ~l~~~~~~ 313 (338)
T 2if4_A 306 ALAEQEKA 313 (338)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 66554333
No 156
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.45 E-value=7.7e-13 Score=102.15 Aligned_cols=93 Identities=11% Similarity=0.021 Sum_probs=81.2
Q ss_pred HcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 017532 221 QVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCL 300 (370)
Q Consensus 221 ~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~ 300 (370)
.+|++++|+.+|++++++. ..+|+. ..++.++|.+++..|++++|+..|+++++.+|+++.+++++|.++
T Consensus 2 ~~g~~~~A~~~~~~al~~~---------~~~p~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 71 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASG---------LQGKDL-AECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVL 71 (117)
T ss_dssp -----CCCHHHHHHHHSSC---------CCHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcC---------CCCccH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4689999999999999421 115766 788999999999999999999999999999999999999999999
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCc
Q 017532 301 MYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 301 ~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
...|++++|+..|+++++..|++
T Consensus 72 ~~~g~~~~A~~~~~~al~~~p~~ 94 (117)
T 3k9i_A 72 YNLGRYEQGVELLLKIIAETSDD 94 (117)
T ss_dssp HHHTCHHHHHHHHHHHHHHHCCC
T ss_pred HHcCCHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999986
No 157
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=3.3e-12 Score=101.83 Aligned_cols=113 Identities=10% Similarity=0.020 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccch
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLD---PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSE 251 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~ 251 (370)
..++.+|..+...|++++|+..|+++++..| .+ ..++..+|.++...|++++|+.+|++++++.+..
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--------- 98 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLDA-TPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD--------- 98 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC---------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc-cchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC---------
Confidence 3456788899999999999999999999999 76 7889999999999999999999999999764432
Q ss_pred HHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 017532 252 VEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLM 301 (370)
Q Consensus 252 p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~ 301 (370)
..++..+|.++...|++++|+.+|+++++.+|++..++..++.+..
T Consensus 99 ----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 99 ----VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 5668889999999999999999999999999999999888877653
No 158
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.45 E-value=3.4e-12 Score=114.73 Aligned_cols=258 Identities=12% Similarity=0.110 Sum_probs=173.5
Q ss_pred CCChHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCC
Q 017532 29 VPDLASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPH 108 (370)
Q Consensus 29 ~~~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~ 108 (370)
|...=.++..+=.|+|..+|+-..+. .|.+......+...+++.+|+++.. +.+
T Consensus 14 ~~~lf~ikn~fy~G~yq~~i~e~~~~-------~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~---------- 67 (310)
T 3mv2_B 14 PMDYFNIKQNYYTGNFVQCLQEIEKF-------SKVTDNTLLFYKAKTLLALGQYQSQ---------DPT---------- 67 (310)
T ss_dssp -CCTHHHHHHHTTTCHHHHTHHHHTS-------SCCCCHHHHHHHHHHHHHTTCCCCC---------CSS----------
T ss_pred cHHHHHHHHHHHhhHHHHHHHHHHhc-------CccchHHHHHHHHHHHHHcCCCccC---------CCC----------
Confidence 44555889999999999999844432 1222234444556788888888741 100
Q ss_pred CCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 017532 109 IYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSK 188 (370)
Q Consensus 109 ~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 188 (370)
. ..--.++++...+ .+. ++..+.+++... ... ..++..+|.++...|
T Consensus 68 -----~--~~~~a~~~la~~~---~~~---a~~~l~~l~~~~-------~~~-------------~~~~~~la~i~~~~g 114 (310)
T 3mv2_B 68 -----S--KLGKVLDLYVQFL---DTK---NIEELENLLKDK-------QNS-------------PYELYLLATAQAILG 114 (310)
T ss_dssp -----S--TTHHHHHHHHHHH---TTT---CCHHHHHTTTTS-------CCC-------------HHHHHHHHHHHHHHT
T ss_pred -----C--HHHHHHHHHHHHh---ccc---HHHHHHHHHhcC-------CCC-------------cHHHHHHHHHHHHcC
Confidence 0 0111234333332 122 555554443210 000 123357888999999
Q ss_pred CHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHH
Q 017532 189 EYNVCFDLMNESIGRGN-GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYL 267 (370)
Q Consensus 189 ~~~~A~~~~~~~l~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~ 267 (370)
++++|+.++++.+..+| ..+..++..++.+++++|+++.|.+.++++.+..++. .-.+.........|.+.+
T Consensus 115 ~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~-------~~~~d~~l~~Laea~v~l 187 (310)
T 3mv2_B 115 DLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDT-------VSGDNEMILNLAESYIKF 187 (310)
T ss_dssp CHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHH-------HHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc-------cccchHHHHHHHHHHHHH
Confidence 99999999999998875 3677888999999999999999999999998643210 000111333344465577
Q ss_pred HcC--CHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC----------CCcchhHHHHHHH
Q 017532 268 VGK--DYVSAVREYEECIERDYN--DIVAINNKALCLMYLRDLSDSIKVLENALERV----------PTVALNETLVVNL 333 (370)
Q Consensus 268 ~~g--~~~eA~~~~~~~l~~~p~--~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~----------p~~~~~~~~~~nl 333 (370)
..| ++.+|...|+++....|+ .+..+.| ++..+|++++|.+.++.+++.. |++ ..++.|+
T Consensus 188 ~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~---~~~LaN~ 261 (310)
T 3mv2_B 188 ATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYK---PTFLANQ 261 (310)
T ss_dssp HHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSH---HHHHHHH
T ss_pred HhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCC---HHHHHHH
Confidence 667 999999999999888886 3445555 8999999999999999888874 555 7888899
Q ss_pred HHHHHhccCCchhhHHHHHHHHhhhCCCC
Q 017532 334 CSMYELAYVNHSDIKRTLSSWIGRVAPDD 362 (370)
Q Consensus 334 ~~lyel~~~~~~~~~~~ll~~~~~~~~d~ 362 (370)
.+++..... ...+++.++....|++
T Consensus 262 i~l~~~lgk----~a~~l~~qL~~~~P~h 286 (310)
T 3mv2_B 262 ITLALMQGL----DTEDLTNQLVKLDHEH 286 (310)
T ss_dssp HHHHHHTTC----TTHHHHHHHHHTTCCC
T ss_pred HHHHHHhCh----HHHHHHHHHHHhCCCC
Confidence 888775432 4467788888888876
No 159
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.44 E-value=3.4e-12 Score=99.62 Aligned_cols=118 Identities=8% Similarity=-0.129 Sum_probs=100.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchH
Q 017532 176 VLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDP---ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEV 252 (370)
Q Consensus 176 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~---~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p 252 (370)
.++.+|..++..|+|++|+..|+++++..| .++ .+++.+|.++...|++++|+.+|+++++..++. +
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~---------~ 73 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH---------D 73 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS---------T
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC---------c
Confidence 456889999999999999999999999999 777 789999999999999999999999999875552 1
Q ss_pred HHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q 017532 253 EFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLR 304 (370)
Q Consensus 253 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g 304 (370)
.. ..++..+|.++...|++++|+..|++++..+|+++.+...+..+..-.+
T Consensus 74 ~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~ 124 (129)
T 2xev_A 74 KA-AGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRL 124 (129)
T ss_dssp TH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred cc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence 11 4567889999999999999999999999999999877665555443333
No 160
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.44 E-value=2.6e-11 Score=112.67 Aligned_cols=175 Identities=10% Similarity=-0.026 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCcc
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDP----ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLL 249 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~----~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~ 249 (370)
..++..++.++...|++++|+..+++++...|..+. .++..+|.++...|++++|+..+++++++.+..
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------- 86 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH------- 86 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc-------
Confidence 356677888899999999999999999998873333 256888999999999999999999999887763
Q ss_pred chHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 017532 250 SEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD--------YNDIVAINNKALCLMYLRDLSDSIKVLENALERVP 321 (370)
Q Consensus 250 ~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~--------p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p 321 (370)
.++.....++.++|.++...|++++|+..|+++++.. |....++.++|.++...|++++|+..+++++...|
T Consensus 87 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 166 (373)
T 1hz4_A 87 DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS 166 (373)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence 2333336677889999999999999999999999874 33456788999999999999999999999999887
Q ss_pred Ccc--hhHHHHHHHHHHHHhccCCchhhHHHHHHHHhh
Q 017532 322 TVA--LNETLVVNLCSMYELAYVNHSDIKRTLSSWIGR 357 (370)
Q Consensus 322 ~~~--~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~ 357 (370)
... .....+.+++.++... +..++...+++....
T Consensus 167 ~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~l~~a~~ 202 (373)
T 1hz4_A 167 SYQPQQQLQCLAMLIQCSLAR--GDLDNARSQLNRLEN 202 (373)
T ss_dssp TSCGGGGHHHHHHHHHHHHHH--TCHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH
Confidence 632 1235677888888754 346677777665543
No 161
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.44 E-value=2.9e-12 Score=99.56 Aligned_cols=115 Identities=17% Similarity=0.187 Sum_probs=101.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 017532 208 DPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDY 287 (370)
Q Consensus 208 ~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p 287 (370)
.+..+..+|.++...|++++|+.+|++++...+.. ..++.++|.++...|++++|+.+|++++..+|
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 69 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN-------------MTYITNQAAVYFEKGDYNKCRELCEKAIEVGR 69 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc-------------HHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc
Confidence 35678899999999999999999999999764432 55678899999999999999999999999988
Q ss_pred CC-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHh
Q 017532 288 ND-------IVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYEL 339 (370)
Q Consensus 288 ~~-------~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel 339 (370)
.+ ..+++++|.++...|++++|++.|+++++..|+ ......+..++..
T Consensus 70 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~l~~~~~~ 124 (131)
T 1elr_A 70 ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT----PDVLKKCQQAEKI 124 (131)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHH
Confidence 77 899999999999999999999999999999985 5667777776653
No 162
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.43 E-value=3.1e-11 Score=109.17 Aligned_cols=151 Identities=8% Similarity=-0.045 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHHhhcCCcc
Q 017532 175 FVLNCLIGYHLSSK--EYNVCFDLMNESIGRGNGLDPILVSKLGFIQ----MQV---GDLEGAKKSFNRVEEMLNEGKFE 245 (370)
Q Consensus 175 ~~~~~la~~~~~~g--~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~----~~~---g~~~~A~~~~~~a~~l~~~~~~~ 245 (370)
.+++.++.++...| ++++++..++.++..+| .+..+|+..+.+. ... +++++++.+++++++..+++
T Consensus 68 taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkn--- 143 (306)
T 3dra_A 68 TIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKN--- 143 (306)
T ss_dssp HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTC---
T ss_pred HHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCC---
Confidence 45567778888888 99999999999999999 9999999999999 777 89999999999999765553
Q ss_pred CCccchHHHHHHHHHhHHHHHHHcCCHH--HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC------HHHHHHHHHHHH
Q 017532 246 DGLLSEVEFRNLVSRNKALIYLVGKDYV--SAVREYEECIERDYNDIVAINNKALCLMYLRD------LSDSIKVLENAL 317 (370)
Q Consensus 246 ~~~~~~p~~~~~~~~~~g~~~~~~g~~~--eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~------~~~A~~~l~~al 317 (370)
-.+|..++.+....|+++ ++++.++++++.+|.|..+|++++.++...|+ ++++++++++++
T Consensus 144 ----------y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI 213 (306)
T 3dra_A 144 ----------HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKI 213 (306)
T ss_dssp ----------HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHH
Confidence 678999999999999999 99999999999999999999999999999988 999999999999
Q ss_pred HhCCCcchhHHHHHHHHHHHHhccC
Q 017532 318 ERVPTVALNETLVVNLCSMYELAYV 342 (370)
Q Consensus 318 ~~~p~~~~~~~~~~nl~~lyel~~~ 342 (370)
..+|++ .++++++..++.....
T Consensus 214 ~~~p~n---~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 214 VKCPQN---PSTWNYLLGIHERFDR 235 (306)
T ss_dssp HHCSSC---HHHHHHHHHHHHHTTC
T ss_pred HhCCCC---ccHHHHHHHHHHhcCC
Confidence 999998 8888888888765443
No 163
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.41 E-value=1.4e-12 Score=121.88 Aligned_cols=125 Identities=14% Similarity=0.072 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----------------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIG----------------RGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEE 237 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~----------------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~ 237 (370)
+..+..+|..++..|+|++|+..|+++++ ..| .+..+++++|.++.++|++++|+.+|+++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~-~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQP-VALSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHH-HHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 46678999999999999999999999998 666 7778999999999999999999999999996
Q ss_pred HhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 017532 238 MLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKV 312 (370)
Q Consensus 238 l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~ 312 (370)
+. |+. ..+++.+|.++...|++++|+..|+++++++|++..++.+++.++...++.+++.+.
T Consensus 302 ~~------------p~~-~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 302 ID------------PSN-TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp TC------------TTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hC------------chh-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 333 677899999999999999999999999999999999999999999999998887654
No 164
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.40 E-value=1.8e-11 Score=120.51 Aligned_cols=149 Identities=8% Similarity=0.018 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHhhc
Q 017532 174 IFVLNCLIGYHLSSKE----------YNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVG--DLEGAKKSFNRVEEMLNE 241 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~----------~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~a~~l~~~ 241 (370)
..+++.++.++...|+ +++++..++++++.+| .+..+|+..+.+..+.| ++++|++.+++++++.+.
T Consensus 63 ~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~ 141 (567)
T 1dce_A 63 ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER 141 (567)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc
Confidence 3566677777777777 9999999999999999 99999999999999999 779999999999976554
Q ss_pred CCccCCccchHHHHHHHHHhHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh--------------CCH
Q 017532 242 GKFEDGLLSEVEFRNLVSRNKALIYLVGK-DYVSAVREYEECIERDYNDIVAINNKALCLMYL--------------RDL 306 (370)
Q Consensus 242 ~~~~~~~~~~p~~~~~~~~~~g~~~~~~g-~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~--------------g~~ 306 (370)
+ ..+|..+|.+....| .++++++++.++++.+|.+..+|++++.++... +++
T Consensus 142 N-------------~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~ 208 (567)
T 1dce_A 142 N-------------FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVL 208 (567)
T ss_dssp C-------------HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHH
T ss_pred c-------------ccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHH
Confidence 3 678899999999999 999999999999999999999999999999885 678
Q ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHh
Q 017532 307 SDSIKVLENALERVPTVALNETLVVNLCSMYEL 339 (370)
Q Consensus 307 ~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel 339 (370)
+++++++.+++..+|++ ..+++++.-++..
T Consensus 209 ~eel~~~~~ai~~~P~~---~saW~y~~~ll~~ 238 (567)
T 1dce_A 209 LKELELVQNAFFTDPND---QSAWFYHRWLLGR 238 (567)
T ss_dssp HHHHHHHHHHHHHCSSC---SHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhhCCCC---ccHHHHHHHHHhc
Confidence 99999999999999998 8899998888753
No 165
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.40 E-value=3.3e-11 Score=125.59 Aligned_cols=250 Identities=11% Similarity=0.013 Sum_probs=165.9
Q ss_pred hHHHHHHcCChHHHHHHHHHhhhccc------------------cCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCC
Q 017532 34 SLQDLATRGSWRTIIDNVSRARSQSL------------------LTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLED 95 (370)
Q Consensus 34 ~l~~l~~~g~~~~Ai~~~~~~~~~~~------------------~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~ 95 (370)
....++..|.|++|+.+|+++..... ....++..+|..+ +.++...|++++|...+.+..+
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqL-AKAql~~G~~kEAIdsYiKAdD 1133 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQL-AKAQLQKGMVKEAIDSYIKADD 1133 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHH-HHHHHhCCCHHHHHHHHHhcCC
Confidence 45556677777777777666311000 0011222344443 7788899999999998877633
Q ss_pred CCCCCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHH-----H-HHH-hhHhhHHhHHH
Q 017532 96 FNSSGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREK-----L-ARK-LAEKLEESVKS 168 (370)
Q Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~-----~-~~~-~~~~~~~~~~~ 168 (370)
.+ . ..++ +......|+.++++..|.......+.. + ... +.+...+....
T Consensus 1134 ~s---a-------------------y~eV--a~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~f 1189 (1630)
T 1xi4_A 1134 PS---S-------------------YMEV--VQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEF 1189 (1630)
T ss_pred hH---H-------------------HHHH--HHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHH
Confidence 21 1 1222 333467799999998887654332111 0 000 11122221112
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCc
Q 017532 169 WKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGL 248 (370)
Q Consensus 169 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~ 248 (370)
........+..+|..+...|+|++|+.+|..+ ..|..+|.++.++|++++|++.+.++..
T Consensus 1190 I~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~n----------- 1249 (1630)
T 1xi4_A 1190 INGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKANS----------- 1249 (1630)
T ss_pred HhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhCC-----------
Confidence 22222345668999999999999999999986 3688899999999999999999999952
Q ss_pred cchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHH
Q 017532 249 LSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNET 328 (370)
Q Consensus 249 ~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~ 328 (370)
..+|.+.+.+++..|+|..|..+... +.. ++.-+..++..|...|.+++|+..|++++.++|.. -.
T Consensus 1250 -------~~aWkev~~acve~~Ef~LA~~cgl~-Iiv---~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH---~g 1315 (1630)
T 1xi4_A 1250 -------TRTWKEVCFACVDGKEFRLAQMCGLH-IVV---HADELEELINYYQDRGYFEELITMLEAALGLERAH---MG 1315 (1630)
T ss_pred -------HHHHHHHHHHHhhhhHHHHHHHHHHh-hhc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhH---hH
Confidence 45678888888899999999887764 433 34455578888889999999999999999988765 55
Q ss_pred HHHHHHHHHHhccC
Q 017532 329 LVVNLCSMYELAYV 342 (370)
Q Consensus 329 ~~~nl~~lyel~~~ 342 (370)
+.-.|+.+|...+.
T Consensus 1316 mftELaiLyaKy~p 1329 (1630)
T 1xi4_A 1316 MFTELAILYSKFKP 1329 (1630)
T ss_pred HHHHHHHHHHhCCH
Confidence 55677777765433
No 166
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.40 E-value=5.1e-13 Score=103.15 Aligned_cols=107 Identities=14% Similarity=0.068 Sum_probs=88.6
Q ss_pred cCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHH
Q 017532 187 SKEYNVCFDLMNESIGR---GNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKA 263 (370)
Q Consensus 187 ~g~~~~A~~~~~~~l~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g 263 (370)
.|++++|+..|+++++. +| .++.++..+|.++...|++++|+.+|++++++.|+. ..++.++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-------------~~~~~~l~ 68 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGK-DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH-------------QALRVFYA 68 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------HHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCc-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------------hHHHHHHH
Confidence 58999999999999999 47 778899999999999999999999999999765542 56788899
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHH
Q 017532 264 LIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLS 307 (370)
Q Consensus 264 ~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~ 307 (370)
.++...|++++|+..|+++++.+|+++.+......+....+.++
T Consensus 69 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~~~~~l~ 112 (117)
T 3k9i_A 69 MVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILFYADKLD 112 (117)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHHHHHTTCTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999987665555555544443
No 167
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.39 E-value=1.4e-12 Score=105.25 Aligned_cols=91 Identities=10% Similarity=0.032 Sum_probs=82.2
Q ss_pred HHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCH----------HHHHHHHHHHHhhCCCC
Q 017532 220 MQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDY----------VSAVREYEECIERDYND 289 (370)
Q Consensus 220 ~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~----------~eA~~~~~~~l~~~p~~ 289 (370)
.+.+.+++|++.|++++++.|+. ..+++++|.++...+++ ++|+..|+++++++|++
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~-------------aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~ 79 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLD-------------ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK 79 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTC-------------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHhHHHHHHHHHHHHHHHCCCC-------------HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc
Confidence 35678999999999999765543 67899999999999876 59999999999999999
Q ss_pred HHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHhCCCc
Q 017532 290 IVAINNKALCLMYLR-----------DLSDSIKVLENALERVPTV 323 (370)
Q Consensus 290 ~~~~~nla~~~~~~g-----------~~~~A~~~l~~al~~~p~~ 323 (370)
..+++++|.+|...| ++++|+++|++|++++|++
T Consensus 80 ~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 80 DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 999999999999885 8999999999999999987
No 168
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.38 E-value=8e-13 Score=121.92 Aligned_cols=122 Identities=15% Similarity=0.064 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017532 209 PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYN 288 (370)
Q Consensus 209 ~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~ 288 (370)
...+..+|..++..|++++|+.+|++++.+.+. . . .+...|++.++...+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~------------~-~--------~~~~~~~~~~~~~~l~-------- 229 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGD------------D-F--------MFQLYGKYQDMALAVK-------- 229 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCH------------H-H--------HHTCCHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc------------c-h--------hhhhcccHHHHHHHHH--------
Confidence 456788899999999999999999999965332 1 1 1234556666655442
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCCCCCC
Q 017532 289 DIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDDFDS 365 (370)
Q Consensus 289 ~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d~~~~ 365 (370)
..+++|+|.++..+|++++|+..|+++++.+|++ ..++++++.+|... +..+.+...++...+..|++.+.
T Consensus 230 -~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~lg~a~~~~--g~~~~A~~~l~~al~l~p~~~~a 300 (338)
T 2if4_A 230 -NPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKN---PKALFRRGKAKAEL--GQMDSARDDFRKAQKYAPDDKAI 300 (338)
T ss_dssp -THHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHTT--TCHHHHHHHHHHTTC--------
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHCCCCHHH
Confidence 2488999999999999999999999999999988 88999999999754 44778888888777776666443
No 169
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.38 E-value=1.1e-11 Score=113.59 Aligned_cols=151 Identities=11% Similarity=-0.058 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHHhhcCCccCCccch
Q 017532 175 FVLNCLIGYHLSSK-EYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQV-G-DLEGAKKSFNRVEEMLNEGKFEDGLLSE 251 (370)
Q Consensus 175 ~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~-g-~~~~A~~~~~~a~~l~~~~~~~~~~~~~ 251 (370)
.+++.++.++...| ++++++..++.++..+| .+..+|+..+.+.... + ++++++++++++++. +
T Consensus 89 taWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~------------d 155 (349)
T 3q7a_A 89 TVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP------------D 155 (349)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS------------C
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh------------C
Confidence 34456667777778 59999999999999999 9999999999999998 8 999999999999954 3
Q ss_pred HHHHHHHHHhHHHHHHHcCCHH--------HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC-------HHHHHHHHHHH
Q 017532 252 VEFRNLVSRNKALIYLVGKDYV--------SAVREYEECIERDYNDIVAINNKALCLMYLRD-------LSDSIKVLENA 316 (370)
Q Consensus 252 p~~~~~~~~~~g~~~~~~g~~~--------eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~-------~~~A~~~l~~a 316 (370)
|.. -.+|..++.+....|+++ ++++.++++++.+|.|..+|++++.++...++ ++++++++.++
T Consensus 156 pkN-y~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~a 234 (349)
T 3q7a_A 156 PKN-YHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKS 234 (349)
T ss_dssp TTC-HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHH
T ss_pred CCC-HHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHH
Confidence 333 678889999999999888 99999999999999999999999999999987 79999999999
Q ss_pred HHhCCCcchhHHHHHHHHHHHHhccC
Q 017532 317 LERVPTVALNETLVVNLCSMYELAYV 342 (370)
Q Consensus 317 l~~~p~~~~~~~~~~nl~~lyel~~~ 342 (370)
+..+|++ .++++++..++.-...
T Consensus 235 I~~~P~n---~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 235 IHLIPHN---VSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHCTTC---HHHHHHHHHHHHHTTC
T ss_pred HHhCCCC---HHHHHHHHHHHHhcCC
Confidence 9999998 8999998888875443
No 170
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.37 E-value=4.7e-11 Score=116.62 Aligned_cols=220 Identities=9% Similarity=-0.031 Sum_probs=107.5
Q ss_pred HHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhh-------hcCHH-------HHHHHhhhcCC-CCCCCCcccccCCC
Q 017532 45 RTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMK-------LRRFD-------EAQQELDSLED-FNSSGYQYETYPHI 109 (370)
Q Consensus 45 ~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~-------l~~~~-------~A~~~~~~~~~-l~~~~~~~~~~~~~ 109 (370)
+.|+..|++++.. +|.+...|+.+ +..+.+ .|+++ +|...+++... +.+ +
T Consensus 255 ~~a~~~y~~al~~----~p~~~~~w~~~-~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p-~--------- 319 (530)
T 2ooe_A 255 KRVMFAYEQCLLV----LGHHPDIWYEA-AQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-K--------- 319 (530)
T ss_dssp HHHHHHHHHHHHH----HTTCHHHHHHH-HHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCS-S---------
T ss_pred HHHHHHHHHHHHh----CCCCHHHHHHH-HHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCc-c---------
Confidence 4677888887543 57765555554 444443 68876 77887777753 221 0
Q ss_pred CCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 017532 110 YPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKE 189 (370)
Q Consensus 110 ~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 189 (370)
+ ..+....+.+....|+.++|...+..++...+. .. ..++...+.++.+.|+
T Consensus 320 ------~---~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-----------~~--------~~~~~~~~~~~~~~~~ 371 (530)
T 2ooe_A 320 ------N---MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-----------DP--------TLVYIQYMKFARRAEG 371 (530)
T ss_dssp ------C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-----------CH--------HHHHHHHHHHHHHHHH
T ss_pred ------c---HHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-----------Cc--------hHHHHHHHHHHHHhcC
Confidence 0 011111222223345555554444443321000 00 0123344444445555
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHH
Q 017532 190 YNVCFDLMNESIGRGNGLDPILVSKLGFI-QMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLV 268 (370)
Q Consensus 190 ~~~A~~~~~~~l~~~~~~~~~~~~~lg~~-~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~ 268 (370)
+++|..+|+++++..| .....+...+.+ +...|++++|...|+++++..|++ ..+|...|..+..
T Consensus 372 ~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~-------------~~~~~~~~~~~~~ 437 (530)
T 2ooe_A 372 IKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI-------------PEYVLAYIDYLSH 437 (530)
T ss_dssp HHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCC-------------HHHHHHHHHHHHh
Confidence 5555555555555554 443333333333 223555555555555555443321 3344555555555
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 017532 269 GKDYVSAVREYEECIERDYNDIV----AINNKALCLMYLRDLSDSIKVLENALERVP 321 (370)
Q Consensus 269 ~g~~~eA~~~~~~~l~~~p~~~~----~~~nla~~~~~~g~~~~A~~~l~~al~~~p 321 (370)
.|++++|...|++++...|.++. +|...+......|+.+.+..++.++++..|
T Consensus 438 ~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 438 LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp TTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred CCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 55555555555555555443322 444444444455555555555555555555
No 171
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.36 E-value=7e-11 Score=101.25 Aligned_cols=141 Identities=11% Similarity=-0.010 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhcCCccC
Q 017532 175 FVLNCLIGYHLSSK----EYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQ----VGDLEGAKKSFNRVEEMLNEGKFED 246 (370)
Q Consensus 175 ~~~~~la~~~~~~g----~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~a~~l~~~~~~~~ 246 (370)
.+++.+|.+|.. + ++++|+.+|+++.+ + .++.+++.+|.+|.. .+++++|+.+|+++.+..+
T Consensus 51 ~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~-g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~------ 120 (212)
T 3rjv_A 51 DALALLAQLKIR-NPQQADYPQARQLAEKAVE--A-GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSE------ 120 (212)
T ss_dssp HHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--T-TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTT------
T ss_pred HHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--C-CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCC------
Confidence 567789999888 7 99999999999976 4 678999999999998 8999999999999984211
Q ss_pred CccchHHHHHHHHHhHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh-C-----CHHHHHHHHHHH
Q 017532 247 GLLSEVEFRNLVSRNKALIYLV----GKDYVSAVREYEECIERDYNDIVAINNKALCLMYL-R-----DLSDSIKVLENA 316 (370)
Q Consensus 247 ~~~~~p~~~~~~~~~~g~~~~~----~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~-g-----~~~~A~~~l~~a 316 (370)
.... ..++.++|.+|.. .+++++|+.+|+++++. |.++.+++++|.+|... | ++++|+..|+++
T Consensus 121 ----~~~~-~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A 194 (212)
T 3rjv_A 121 ----SDAA-VDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVS 194 (212)
T ss_dssp ----SHHH-HHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHH
T ss_pred ----Ccch-HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence 1022 5678899999999 89999999999999998 77788999999999874 3 899999999999
Q ss_pred HHhCCCcchhHHHHHHHHHH
Q 017532 317 LERVPTVALNETLVVNLCSM 336 (370)
Q Consensus 317 l~~~p~~~~~~~~~~nl~~l 336 (370)
++... .....++..+
T Consensus 195 ~~~g~-----~~A~~~l~~l 209 (212)
T 3rjv_A 195 CLEGF-----DTGCEEFDRI 209 (212)
T ss_dssp HHHTC-----HHHHHHHHHH
T ss_pred HHcCC-----HHHHHHHHHh
Confidence 99865 3444454443
No 172
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.36 E-value=5.8e-12 Score=113.00 Aligned_cols=104 Identities=15% Similarity=0.101 Sum_probs=96.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017532 207 LDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD 286 (370)
Q Consensus 207 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~ 286 (370)
.+...+..+|..+...|++++|+..|++++++.+.. ..++.++|.++...|++++|+..|+++++++
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 68 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV-------------AVYYTNRALCYLKMQQPEQALADCRRALELD 68 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc-------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 567889999999999999999999999999765442 5678899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 287 YNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 287 p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
|+++.+++++|.++...|++++|+..|+++++.+|+.
T Consensus 69 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 69 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 9999999999999999999999999999999998864
No 173
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.35 E-value=3.3e-10 Score=103.21 Aligned_cols=147 Identities=8% Similarity=0.020 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHhhcC
Q 017532 175 FVLNCLIGYHLSSKE----------YNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGD--LEGAKKSFNRVEEMLNEG 242 (370)
Q Consensus 175 ~~~~~la~~~~~~g~----------~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~~a~~l~~~~ 242 (370)
.+++.++.++...++ +++++.+++.++..+| .+..+|+..+.+....|+ +++++.+++++++..+.+
T Consensus 65 taWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprN 143 (331)
T 3dss_A 65 TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN 143 (331)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCC
Confidence 344445555544443 7899999999999999 999999999999999994 899999999999765543
Q ss_pred CccCCccchHHHHHHHHHhHHHHHHHcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh--------------CCHH
Q 017532 243 KFEDGLLSEVEFRNLVSRNKALIYLVGKD-YVSAVREYEECIERDYNDIVAINNKALCLMYL--------------RDLS 307 (370)
Q Consensus 243 ~~~~~~~~~p~~~~~~~~~~g~~~~~~g~-~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~--------------g~~~ 307 (370)
-.+|..++.+....|. ++++++++.++++.+|.|..+|++++.++... +.++
T Consensus 144 -------------y~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~ 210 (331)
T 3dss_A 144 -------------FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLL 210 (331)
T ss_dssp -------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHH
T ss_pred -------------HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHH
Confidence 6778899999999999 69999999999999999999999999999887 5699
Q ss_pred HHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Q 017532 308 DSIKVLENALERVPTVALNETLVVNLCSMYE 338 (370)
Q Consensus 308 ~A~~~l~~al~~~p~~~~~~~~~~nl~~lye 338 (370)
++++++.+++..+|++ .++++.+.-++.
T Consensus 211 eEle~~~~ai~~~P~d---~SaW~Y~r~ll~ 238 (331)
T 3dss_A 211 KELELVQNAFFTDPND---QSAWFYHRWLLG 238 (331)
T ss_dssp HHHHHHHHHHHHSTTC---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCC---HHHHHHHHHHHH
Confidence 9999999999999998 777776665554
No 174
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.35 E-value=3.3e-10 Score=118.18 Aligned_cols=243 Identities=15% Similarity=0.048 Sum_probs=155.2
Q ss_pred hHhHHHHHHcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCC
Q 017532 32 LASLQDLATRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYP 111 (370)
Q Consensus 32 ~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~ 111 (370)
-...+.++..|.+.+|+.+++++.-.+-...-+..+-....+.......++..+....++.. +
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~---d-------------- 1051 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNY---D-------------- 1051 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhc---c--------------
Confidence 44778888999999999999997532110000111222222223333445555555444322 0
Q ss_pred CCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHH--hhHhhHHhHHHHHHH-HHHHHHHHHHHHHhcC
Q 017532 112 NRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARK--LAEKLEESVKSWKKR-EIFVLNCLIGYHLSSK 188 (370)
Q Consensus 112 ~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g 188 (370)
.+ . .|.+....|.+++|+..|........ .+... ..+..+++.+...+- ...+++.+|..+...|
T Consensus 1052 ------~~---e--IA~Iai~lglyEEAf~IYkKa~~~~~-A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1052 ------AP---D--IANIAISNELFEEAFAIFRKFDVNTS-AVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred ------HH---H--HHHHHHhCCCHHHHHHHHHHcCCHHH-HHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Confidence 00 0 23344667777888777766431111 11000 111222222222211 1678889999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCcc---------------CCccchHH
Q 017532 189 EYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFE---------------DGLLSEVE 253 (370)
Q Consensus 189 ~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~---------------~~~~~~p~ 253 (370)
++++|+..|.++ +++..+..+|.++.+.|++++|+++|+.+.+..++...+ -.......
T Consensus 1120 ~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~ 1193 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGP 1193 (1630)
T ss_pred CHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCC
Confidence 999999999886 778889999999999999999999999887654332000 00000000
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALE 318 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~ 318 (370)
. ...+...|..++..|+|++|+.+|.++ ..|..+|.++.++|++++|++.++++..
T Consensus 1194 n-~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n 1249 (1630)
T 1xi4_A 1194 N-NAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANS 1249 (1630)
T ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCC
Confidence 0 124567999999999999999999986 4788999999999999999999999933
No 175
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.34 E-value=1.4e-11 Score=102.06 Aligned_cols=127 Identities=10% Similarity=0.010 Sum_probs=105.9
Q ss_pred HHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 017532 219 QMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKAL 298 (370)
Q Consensus 219 ~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~ 298 (370)
+...|++++|+..|+++++..+.. ..++..+|.+++..|++++|+..|++++..+|+++.++.++|.
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~-------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 86 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQN-------------SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALAT 86 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCc-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 346799999999999999764432 5678889999999999999999999999999999999999999
Q ss_pred H-HHHhCCH--HHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCCCC
Q 017532 299 C-LMYLRDL--SDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDDF 363 (370)
Q Consensus 299 ~-~~~~g~~--~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d~~ 363 (370)
+ +...|++ ++|+..++++++.+|+. ..++++++.+|... +..+.....++.+....|++.
T Consensus 87 ~l~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 87 VLYYQASQHMTAQTRAMIDKALALDSNE---ITALMLLASDAFMQ--ANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp HHHHHTTTCCCHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCCTTS
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHc--ccHHHHHHHHHHHHhhCCCCc
Confidence 9 7899999 99999999999999987 78899999998754 447777777777777666653
No 176
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.34 E-value=1.3e-10 Score=111.43 Aligned_cols=165 Identities=10% Similarity=0.024 Sum_probs=128.8
Q ss_pred hHHhHHHHHHHH------HHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H--HHcCCHHHH
Q 017532 162 LEESVKSWKKRE------IFVLNCLIGYHLSS----KEYNVCFDLMNESIGRGNGLDPILVSKLGFI-Q--MQVGDLEGA 228 (370)
Q Consensus 162 ~~~~~~~~~~~~------~~~~~~la~~~~~~----g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~-~--~~~g~~~~A 228 (370)
..++++.++... +..++.+|.+|... +++++|+.+|+++. + .++.+++.+|.+ + ...|++++|
T Consensus 195 ~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~-g~~~a~~~Lg~~~~~~~~~~d~~~A 270 (452)
T 3e4b_A 195 QAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---P-GYPASWVSLAQLLYDFPELGDVEQM 270 (452)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---G-GSTHHHHHHHHHHHHSGGGCCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---C-CCHHHHHHHHHHHHhCCCCCCHHHH
Confidence 344555554443 44558899988765 79999999999998 7 889999999998 4 568999999
Q ss_pred HHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcC-----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-
Q 017532 229 KKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGK-----DYVSAVREYEECIERDYNDIVAINNKALCLMY- 302 (370)
Q Consensus 229 ~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g-----~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~- 302 (370)
+.+|+++.+. .+ ..+..++|.+|. .| ++++|+.+|+++. |.++.+.+++|.+|..
T Consensus 271 ~~~~~~Aa~~-----------g~----~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G 331 (452)
T 3e4b_A 271 MKYLDNGRAA-----------DQ----PRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRG 331 (452)
T ss_dssp HHHHHHHHHT-----------TC----HHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHC-----------CC----HHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCC
Confidence 9999999852 12 456788999998 66 9999999999998 8999999999998887
Q ss_pred ---hCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhcc--CCchhhHHHHHHH
Q 017532 303 ---LRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAY--VNHSDIKRTLSSW 354 (370)
Q Consensus 303 ---~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~--~~~~~~~~~ll~~ 354 (370)
..++++|+..|+++.+... ....++|+.+|+... ..+..+...+...
T Consensus 332 ~g~~~d~~~A~~~~~~Aa~~g~-----~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 383 (452)
T 3e4b_A 332 YLGKVYPQKALDHLLTAARNGQ-----NSADFAIAQLFSQGKGTKPDPLNAYVFSQL 383 (452)
T ss_dssp TTSSCCHHHHHHHHHHHHTTTC-----TTHHHHHHHHHHSCTTBCCCHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHhhCh-----HHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 4499999999999988643 567889999998432 1233444444443
No 177
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.33 E-value=4.2e-12 Score=102.42 Aligned_cols=93 Identities=8% Similarity=0.054 Sum_probs=82.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHhhcCCccCCccchHHHH
Q 017532 186 SSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDL----------EGAKKSFNRVEEMLNEGKFEDGLLSEVEFR 255 (370)
Q Consensus 186 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~ 255 (370)
+.+.|++|+..++++++.+| .++.++.++|.++...|++ ++|+..|++++++.|+ .
T Consensus 14 r~~~feeA~~~~~~Ai~l~P-~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~------------~- 79 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNP-LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK------------K- 79 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT------------C-
T ss_pred HHhHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC------------c-
Confidence 34789999999999999999 9999999999999999875 5999999999977554 3
Q ss_pred HHHHHhHHHHHHHcC-----------CHHHHHHHHHHHHhhCCCCHHH
Q 017532 256 NLVSRNKALIYLVGK-----------DYVSAVREYEECIERDYNDIVA 292 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g-----------~~~eA~~~~~~~l~~~p~~~~~ 292 (370)
..+++++|.+|..+| ++++|+++|+++++++|++...
T Consensus 80 ~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 80 DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence 778999999999885 8999999999999999998643
No 178
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.32 E-value=1.1e-11 Score=93.57 Aligned_cols=103 Identities=14% Similarity=-0.004 Sum_probs=91.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHH
Q 017532 176 VLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFR 255 (370)
Q Consensus 176 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~ 255 (370)
+++.+|.++...|++++|+..++++++..| .+..++..+|.++...|++++|+.+|++++++.+.. .+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~---- 75 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDE-------YN---- 75 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCT-------TC----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccc-------ch----
Confidence 456788999999999999999999999999 999999999999999999999999999999754330 01
Q ss_pred HHHHHhHHHHHHHc-CCHHHHHHHHHHHHhhCCCCH
Q 017532 256 NLVSRNKALIYLVG-KDYVSAVREYEECIERDYNDI 290 (370)
Q Consensus 256 ~~~~~~~g~~~~~~-g~~~eA~~~~~~~l~~~p~~~ 290 (370)
..++.++|.++... |++++|+++|++++..+|.++
T Consensus 76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 76 KDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 56788999999999 999999999999999998753
No 179
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.30 E-value=1.9e-12 Score=125.11 Aligned_cols=126 Identities=16% Similarity=0.126 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 017532 211 LVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI 290 (370)
Q Consensus 211 ~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~ 290 (370)
.+..+|.++.+.|++++|+++|++++++.++. ..++.++|.++..+|++++|++.|+++++++|+++
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~-------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 74 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELNPSN-------------AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI 74 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc-------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH
Confidence 45567888999999999999999999765442 67789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHH
Q 017532 291 VAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLS 352 (370)
Q Consensus 291 ~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll 352 (370)
.+++++|.++..+|++++|++.|+++++.+|+. .....+++.+..+...+..+++..+.
T Consensus 75 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~g~~~~A~~~~ 133 (477)
T 1wao_1 75 KGYYRRAASNMALGKFRAALRDYETVVKVKPHD---KDAKMKYQECNKIVKQKAFERAIAGD 133 (477)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC---TTHHHHHHHHHHHHHHHHHCCC----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999987 66777777774333333334444443
No 180
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.29 E-value=1.8e-10 Score=92.48 Aligned_cols=139 Identities=12% Similarity=0.030 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017532 209 PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYN 288 (370)
Q Consensus 209 ~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~ 288 (370)
..++..+|.++...|++++|+.+|++++++.+.. .++.....++.++|.++...|++++|+..|+++++..+.
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 81 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF-------GDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 81 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh-------CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999999887652 233333678899999999999999999999999987543
Q ss_pred C------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC---cchhHHHHHHHHHHHHhccCCchhhHHHHHHHHh
Q 017532 289 D------IVAINNKALCLMYLRDLSDSIKVLENALERVPT---VALNETLVVNLCSMYELAYVNHSDIKRTLSSWIG 356 (370)
Q Consensus 289 ~------~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~---~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~ 356 (370)
. ..++.++|.++...|++++|+..++++++..+. .........+++.+|....+ .+.....++...
T Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~a~ 156 (164)
T 3ro3_A 82 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN--HDQAMHFAEKHL 156 (164)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHH
T ss_pred hCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccC--HHHHHHHHHHHH
Confidence 2 568899999999999999999999999987432 22335677889998875433 566666665443
No 181
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.27 E-value=1e-10 Score=112.70 Aligned_cols=138 Identities=11% Similarity=-0.036 Sum_probs=116.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC----CCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCcc
Q 017532 177 LNCLIGYHLSSKEYNVCFDLMNESIGRGN----GLDP---ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLL 249 (370)
Q Consensus 177 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~----~~~~---~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~ 249 (370)
....+..+..+|+|++|+.++++++++.. .+++ .++++||.+|..+|++++|+.++++++.+...... .
T Consensus 312 ~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG----~ 387 (490)
T 3n71_A 312 TLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYH----H 387 (490)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC----T
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcC----C
Confidence 34555667889999999999999987532 1555 45689999999999999999999999988765432 5
Q ss_pred chHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 250 SEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIER-----DYNDI---VAINNKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 250 ~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~-----~p~~~---~~~~nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
.+|+. +..+.++|.+|..+|++++|+..|++++++ .|+++ .+..+++.++..++++++|...|.++.+.
T Consensus 388 ~Hp~~-a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 388 NNAQL-GMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp TCHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68888 899999999999999999999999999987 45555 56789999999999999999999998654
No 182
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.25 E-value=4.1e-12 Score=119.18 Aligned_cols=234 Identities=13% Similarity=0.052 Sum_probs=101.2
Q ss_pred HcCChHHHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCCCCCCCCcccc
Q 017532 40 TRGSWRTIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHIYPNRTGSMVP 119 (370)
Q Consensus 40 ~~g~~~~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 119 (370)
+.|++++|.+.+++. .+| . .|...+.++.+.|++++|+..+.+..+.. .|+
T Consensus 15 ~~~~ld~A~~fae~~------~~~---~-vWs~La~A~l~~g~~~eAIdsfika~D~~---~y~---------------- 65 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEP---A-VWSQLAKAQLQKGMVKEAIDSYIKADDPS---SYM---------------- 65 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CCh---H-HHHHHHHHHHHcCCHHHHHHHHHcCCCHH---HHH----------------
Confidence 567799999888774 122 2 33445888999999999999887653221 111
Q ss_pred hhHHHHHHHcCcccCCccchHHHHHHHHHHHHHH-HH-----HH-hhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHH
Q 017532 120 FSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREK-LA-----RK-LAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNV 192 (370)
Q Consensus 120 ~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~-~~-----~~-~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 192 (370)
.+ .......|+.++|+..+...++..+.. +. .. +.+...+.....+.-...++..+|..+...|+|++
T Consensus 66 ---~V--~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yee 140 (449)
T 1b89_A 66 ---EV--VQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDA 140 (449)
T ss_dssp ------------------------------------------------CHHHHTTTTTCC----------------CTTT
T ss_pred ---HH--HHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHH
Confidence 00 111244688888888665554432111 00 00 11111121111111113477899999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCH
Q 017532 193 CFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDY 272 (370)
Q Consensus 193 A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~ 272 (370)
|..+|.++ ..+..+|.++.++|++++|++.|.++. + ...|...+.++...|+|
T Consensus 141 A~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA~--------------~----~~~Wk~v~~aCv~~~ef 193 (449)
T 1b89_A 141 AKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN--------------S----TRTWKEVCFACVDGKEF 193 (449)
T ss_dssp HHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHHT--------------C----HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHcC--------------C----chhHHHHHHHHHHcCcH
Confidence 99999976 248889999999999999999999994 1 45677788899999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhcc
Q 017532 273 VSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAY 341 (370)
Q Consensus 273 ~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~ 341 (370)
+.|..+... +..+|++ ...++.+|.+.|++++|++.+++++.+++.. ..+...|+.+|...+
T Consensus 194 ~lA~~~~l~-L~~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le~ah---~~~ftel~il~~ky~ 255 (449)
T 1b89_A 194 RLAQMCGLH-IVVHADE---LEELINYYQDRGYFEELITMLEAALGLERAH---MGMFTELAILYSKFK 255 (449)
T ss_dssp HHHHHTTTT-TTTCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCC---HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHH-HHhCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHH---HHHHHHHHHHHHhcC
Confidence 999887775 3355554 3357788999999999999999999999877 788888999987543
No 183
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.24 E-value=7.8e-12 Score=110.98 Aligned_cols=162 Identities=10% Similarity=0.079 Sum_probs=128.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC---------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 017532 181 IGYHLSSKEYNVCFDLMNESIGRGNGLD---------------------PILVSKLGFIQMQVGDLEGAKKSFNRVEEML 239 (370)
Q Consensus 181 a~~~~~~g~~~~A~~~~~~~l~~~~~~~---------------------~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~ 239 (370)
+.++...+++.+++..+++.+.+.| .. ..+....+.++...|++++|.+.|+.+.
T Consensus 54 ~~~L~~~~r~~~a~~~~~~~l~l~p-~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~--- 129 (282)
T 4f3v_A 54 RVTLFRAWYSRRNFGQLSGSVQISM-STLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAP--- 129 (282)
T ss_dssp HHHHHHHHHTGGGTTHHHHTTTCCG-GGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSC---
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCh-hhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHH---
Confidence 5667777888899999999999777 22 2445667899999999999999999887
Q ss_pred hcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC-C-HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 017532 240 NEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYN-D-IVAINNKALCLMYLRDLSDSIKVLENAL 317 (370)
Q Consensus 240 ~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~-~-~~~~~nla~~~~~~g~~~~A~~~l~~al 317 (370)
...|.. . ..+.+|.+++..|+|++|+..|++++...++ . ..+++++|.++..+|++++|+..|++++
T Consensus 130 ---------~~~p~~-~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~ 198 (282)
T 4f3v_A 130 ---------VAGSEH-L-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEAN 198 (282)
T ss_dssp ---------CTTCHH-H-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---------hcCCch-H-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 334554 4 7788999999999999999999988765322 1 3589999999999999999999999998
Q ss_pred HhC--CCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCC
Q 017532 318 ERV--PTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPD 361 (370)
Q Consensus 318 ~~~--p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d 361 (370)
... |. ......++++.++.- .+..+++..+++++....|+
T Consensus 199 ~g~~~P~--~~~da~~~~glaL~~--lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 199 DSPAGEA--CARAIAWYLAMARRS--QGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp TSTTTTT--THHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHSCC
T ss_pred cCCCCcc--ccHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCc
Confidence 544 33 135678888887763 45578889988888777665
No 184
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.23 E-value=5.4e-10 Score=109.94 Aligned_cols=136 Identities=5% Similarity=-0.004 Sum_probs=123.8
Q ss_pred cCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHhhcCCccCCccchHHHH
Q 017532 187 SKE-YNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGD----------LEGAKKSFNRVEEMLNEGKFEDGLLSEVEFR 255 (370)
Q Consensus 187 ~g~-~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~ 255 (370)
.|+ .++|+..+.+++..+| .+..+|+..+.++...|+ ++++++.++++++..+++
T Consensus 41 ~~~~~eeal~~~~~~l~~nP-~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~------------- 106 (567)
T 1dce_A 41 AGELDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS------------- 106 (567)
T ss_dssp TTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC-------------
T ss_pred cCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC-------------
Confidence 344 4578999999999999 999999999999999998 999999999999765543
Q ss_pred HHHHHhHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCCCcchhHHHHHH
Q 017532 256 NLVSRNKALIYLVGK--DYVSAVREYEECIERDYNDIVAINNKALCLMYLR-DLSDSIKVLENALERVPTVALNETLVVN 332 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g--~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g-~~~~A~~~l~~al~~~p~~~~~~~~~~n 332 (370)
..+|.++|.++...| ++++|++.+.++++.+|.+..+|++++.++...| .+++++++++++++.+|++ ..++.+
T Consensus 107 y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n---~saW~~ 183 (567)
T 1dce_A 107 YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN---YSSWHY 183 (567)
T ss_dssp HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC---HHHHHH
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCC---ccHHHH
Confidence 678999999999999 7799999999999999999999999999999999 9999999999999999998 788888
Q ss_pred HHHHHHh
Q 017532 333 LCSMYEL 339 (370)
Q Consensus 333 l~~lyel 339 (370)
.+.++..
T Consensus 184 r~~ll~~ 190 (567)
T 1dce_A 184 RSCLLPQ 190 (567)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8877654
No 185
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.23 E-value=7.3e-12 Score=94.85 Aligned_cols=93 Identities=10% Similarity=0.044 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017532 209 PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYN 288 (370)
Q Consensus 209 ~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~ 288 (370)
...+..+|.++...|++++|+..|++++++.+.. ..++.++|.+++..|++++|+..|+++++++|+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 70 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN-------------PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST 70 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 3445556666666666666666666666543321 334555666666666666666666666666666
Q ss_pred C------HHHHHHHHHHHHHhCCHHHHHHHHH
Q 017532 289 D------IVAINNKALCLMYLRDLSDSIKVLE 314 (370)
Q Consensus 289 ~------~~~~~nla~~~~~~g~~~~A~~~l~ 314 (370)
+ ..+++++|.++...|++++|+..++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 71 AEHVAIRSKLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence 5 5566666666666666555555443
No 186
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.20 E-value=1.6e-09 Score=99.14 Aligned_cols=140 Identities=9% Similarity=-0.065 Sum_probs=125.2
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhH
Q 017532 184 HLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVG-DLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNK 262 (370)
Q Consensus 184 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~ 262 (370)
....+..++|+..+.+++..+| .+..+|+..+.+....| ++++++..+++++...+++ -.+|..+
T Consensus 64 ~~~~e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKn-------------y~aW~hR 129 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKS-------------YQVWHHR 129 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCC-------------HHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCc-------------HHHHHHH
Confidence 3344666789999999999999 99999999999999999 5999999999999655443 6789999
Q ss_pred HHHHHHc-C-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHH--------HHHHHHHHHHHhCCCcchhHHHHHH
Q 017532 263 ALIYLVG-K-DYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLS--------DSIKVLENALERVPTVALNETLVVN 332 (370)
Q Consensus 263 g~~~~~~-g-~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~--------~A~~~l~~al~~~p~~~~~~~~~~n 332 (370)
+.++... + +++++++.+.++++.+|.|..+|+.++-++...|+++ +++++++++++.+|++ ..++.+
T Consensus 130 ~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N---~SAW~~ 206 (349)
T 3q7a_A 130 LLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRN---NSAWGW 206 (349)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTC---HHHHHH
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCC---HHHHHH
Confidence 9999988 8 9999999999999999999999999999999999988 9999999999999998 888888
Q ss_pred HHHHHHhc
Q 017532 333 LCSMYELA 340 (370)
Q Consensus 333 l~~lyel~ 340 (370)
...+....
T Consensus 207 R~~lL~~l 214 (349)
T 3q7a_A 207 RWYLRVSR 214 (349)
T ss_dssp HHHHHTTS
T ss_pred HHHHHHhc
Confidence 88776543
No 187
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.19 E-value=6.3e-10 Score=105.19 Aligned_cols=222 Identities=11% Similarity=0.032 Sum_probs=154.8
Q ss_pred ChHhHHHHHHcCChHHHHHHHHHhhhccccCCc------------hHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCC
Q 017532 31 DLASLQDLATRGSWRTIIDNVSRARSQSLLTQP------------HHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNS 98 (370)
Q Consensus 31 ~~~~l~~l~~~g~~~~Ai~~~~~~~~~~~~~~P------------~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~ 98 (370)
.....+.+++.|+|++|++.+.+++........ ......+...+..+...|++++|...+..+....+
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 345778899999999999999997654311100 00011233346778999999999999888743211
Q ss_pred CCCcccccCCCCCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHH
Q 017532 99 SGYQYETYPHIYPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLN 178 (370)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (370)
........-..+.....+....|..+.++..+...+......- .. . . ..+++.
T Consensus 87 -------------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~-~-----~----~~~~~~ 139 (434)
T 4b4t_Q 87 -------------QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREK----RV-F-----L----KHSLSI 139 (434)
T ss_dssp -------------TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSS----CC-S-----S----HHHHHH
T ss_pred -------------HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhC----cc-H-----H----HHHHHH
Confidence 0010111112233345555667888888877766554433210 00 0 0 136778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 179 CLIGYHLSSKEYNVCFDLMNESIGRGN-----GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 179 ~la~~~~~~g~~~~A~~~~~~~l~~~~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
.+|.++...|+|++|+.++++++.... .....++..+|++|...|++++|...|++++.+.+.. ...+.
T Consensus 140 ~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~ 213 (434)
T 4b4t_Q 140 KLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSI------YCPTQ 213 (434)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS------CCCHH
T ss_pred HHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcC------CCchH
Confidence 999999999999999999999976432 1234678999999999999999999999999887654 34455
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIER 285 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~ 285 (370)
.....+...|.++...|+|++|..+|.++++.
T Consensus 214 ~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 214 TVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 55788889999999999999999999999875
No 188
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.18 E-value=3.2e-10 Score=82.33 Aligned_cols=80 Identities=24% Similarity=0.206 Sum_probs=75.9
Q ss_pred HHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Q 017532 256 NLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCS 335 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~ 335 (370)
...+..+|.+++..|++++|+.+|+++++.+|+++.+++++|.++...|++++|+..++++++.+|++ .....+++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~l~~ 85 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---AEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---HHHHHHHHH
Confidence 66788999999999999999999999999999999999999999999999999999999999999987 788899988
Q ss_pred HHH
Q 017532 336 MYE 338 (370)
Q Consensus 336 lye 338 (370)
++.
T Consensus 86 ~~~ 88 (91)
T 1na3_A 86 AKQ 88 (91)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 189
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.17 E-value=3.1e-10 Score=82.43 Aligned_cols=85 Identities=20% Similarity=0.147 Sum_probs=74.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017532 207 LDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD 286 (370)
Q Consensus 207 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~ 286 (370)
.+...++.+|.++...|++++|+.+|++++++.+.. ..++.++|.++...|++++|+..|+++++.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 356788999999999999999999999999764432 4567889999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhC
Q 017532 287 YNDIVAINNKALCLMYLR 304 (370)
Q Consensus 287 p~~~~~~~nla~~~~~~g 304 (370)
|+++.++.++|.++...|
T Consensus 74 p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 74 PNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp TTCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhcC
Confidence 999999999999988765
No 190
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.16 E-value=5e-10 Score=85.64 Aligned_cols=64 Identities=14% Similarity=0.068 Sum_probs=32.5
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 017532 258 VSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVP 321 (370)
Q Consensus 258 ~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p 321 (370)
++.++|.+++..|++++|+..|++++..+|++..+++++|.++...|++++|+..|+++++..|
T Consensus 21 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 84 (115)
T 2kat_A 21 LRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQ 84 (115)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 3444455555555555555555555555555555555555555555555555555555555444
No 191
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.11 E-value=1.7e-10 Score=108.25 Aligned_cols=164 Identities=9% Similarity=0.023 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF 254 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~ 254 (370)
..+..+|.++.+.|+|++|+..++++ .++.+|..++.++...|+++.|..+.... ..+|+.
T Consensus 149 ~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-------------~~~ad~ 209 (449)
T 1b89_A 149 SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-------------VVHADE 209 (449)
T ss_dssp TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-------------TTCHHH
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-------------HhCHhh
Confidence 34568999999999999999999999 56889999999999999999997777653 235544
Q ss_pred HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHhCC-----CcchhH
Q 017532 255 RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMY--LRDLSDSIKVLENALERVP-----TVALNE 327 (370)
Q Consensus 255 ~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~--~g~~~~A~~~l~~al~~~p-----~~~~~~ 327 (370)
...+..+|.+.|++++|+..|++++.+++.+...+.-+|+++.+ .+++.+.++.|.+.+.+.| .. .
T Consensus 210 ----l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~---~ 282 (449)
T 1b89_A 210 ----LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQ---A 282 (449)
T ss_dssp ----HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHT---T
T ss_pred ----HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHH---H
Confidence 22477889999999999999999999999999999999998875 6788888888887766655 33 4
Q ss_pred HHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCCCCCCcccc
Q 017532 328 TLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDDFDSSCTR 369 (370)
Q Consensus 328 ~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d~~~~~~~~ 369 (370)
.++..+..+|--..+ -+.+.. -+-..+++.|+...||
T Consensus 283 ~~w~e~~~ly~~~~e--~d~A~~---tm~~h~~~a~~~~~f~ 319 (449)
T 1b89_A 283 HLWAELVFLYDKYEE--YDNAII---TMMNHPTDAWKEGQFK 319 (449)
T ss_dssp TCHHHHHHHHHHTTC--HHHHHH---HHHHSTTTTCCHHHHH
T ss_pred HHHHHHHHHHHhhch--HHHHHH---HHHhCChhhhhhHHHH
Confidence 566777777753222 222221 2345566766665543
No 192
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.10 E-value=9.4e-10 Score=82.96 Aligned_cols=84 Identities=19% Similarity=0.213 Sum_probs=73.5
Q ss_pred HHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcc---hhHHHHHH
Q 017532 256 NLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVA---LNETLVVN 332 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~---~~~~~~~n 332 (370)
...+..+|.+++..|++++|++.|+++++.+|+++.+++++|.++...|++++|++.++++++.+|++. ....++++
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 456888999999999999999999999999999999999999999999999999999999999999851 12445667
Q ss_pred HHHHHHh
Q 017532 333 LCSMYEL 339 (370)
Q Consensus 333 l~~lyel 339 (370)
++.++..
T Consensus 84 ~~~~~~~ 90 (111)
T 2l6j_A 84 LELAQGA 90 (111)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766653
No 193
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.08 E-value=2.1e-09 Score=85.47 Aligned_cols=112 Identities=13% Similarity=0.054 Sum_probs=99.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHH
Q 017532 188 KEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYL 267 (370)
Q Consensus 188 g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~ 267 (370)
+++++|+.+|+++.+.+. .... +|.+|...+.+++|+.+|+++.+. .+ ..+..++|.+|.
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~-----------g~----~~a~~~Lg~~y~ 68 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACEL-----------NS----GNGCRFLGDFYE 68 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHT-----------TC----HHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcC-----------CC----HHHHHHHHHHHH
Confidence 678999999999998876 4443 999999999999999999999853 12 456788999999
Q ss_pred H----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCC
Q 017532 268 V----GKDYVSAVREYEECIERDYNDIVAINNKALCLMY----LRDLSDSIKVLENALERVP 321 (370)
Q Consensus 268 ~----~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~----~g~~~~A~~~l~~al~~~p 321 (370)
. .+++++|+.+|+++.+. .++.+.+++|.+|.. .+++++|+..|+++.+...
T Consensus 69 ~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 69 NGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred cCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 9 89999999999999987 679999999999999 9999999999999999854
No 194
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.08 E-value=5.9e-10 Score=85.26 Aligned_cols=81 Identities=10% Similarity=-0.050 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHH
Q 017532 273 VSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLS 352 (370)
Q Consensus 273 ~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll 352 (370)
++|+..|+++++.+|+++.+++++|.++...|++++|+..|+++++.+|++ ...+++++.+|.... ..+.....+
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g--~~~~A~~~~ 76 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY---SVAWKWLGKTLQGQG--DRAGARQAW 76 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHT--CHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc---HHHHHHHHHHHHHcC--CHHHHHHHH
Confidence 368899999999999999999999999999999999999999999999988 788999999998544 366666666
Q ss_pred HHHhhh
Q 017532 353 SWIGRV 358 (370)
Q Consensus 353 ~~~~~~ 358 (370)
+.....
T Consensus 77 ~~al~~ 82 (115)
T 2kat_A 77 ESGLAA 82 (115)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 665443
No 195
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.08 E-value=3.5e-10 Score=84.56 Aligned_cols=67 Identities=16% Similarity=0.102 Sum_probs=64.0
Q ss_pred HHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 256 NLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
..+++++|.+++..|++++|+..|+++++.+|+++.+++++|.++...|++++|++.|++++++.|+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 5678999999999999999999999999999999999999999999999999999999999998765
No 196
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.05 E-value=7.8e-09 Score=97.59 Aligned_cols=168 Identities=10% Similarity=0.027 Sum_probs=128.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 017532 179 CLIGYHLSSKEYNVCFDLMNESIGRGNGLD-----------------PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNE 241 (370)
Q Consensus 179 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~-----------------~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~ 241 (370)
..|..+...|+|++|+..|.++++..+ .. ..++..+|.+|...|++++|.++|++++...+.
T Consensus 9 ~~a~~l~~~~~y~eA~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~ 87 (434)
T 4b4t_Q 9 EEARRLVNEKQYNEAEQVYLSLLDKDS-SQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQ 87 (434)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHSCC-CSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCc-ccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 445667778999999999999999887 22 145788999999999999999999999987765
Q ss_pred CCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 017532 242 GKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD------YNDIVAINNKALCLMYLRDLSDSIKVLEN 315 (370)
Q Consensus 242 ~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~------p~~~~~~~nla~~~~~~g~~~~A~~~l~~ 315 (370)
. .+......+..++|.++...|++++|+..+++++... +....++.++|.++...|++++|+..+++
T Consensus 88 ~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 160 (434)
T 4b4t_Q 88 F-------AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALIND 160 (434)
T ss_dssp S-------CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred c-------cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 3 2222224566778999999999999999999998763 33457889999999999999999999999
Q ss_pred HHHhCCC---cchhHHHHHHHHHHHHhccCCchhhHHHHHHHHh
Q 017532 316 ALERVPT---VALNETLVVNLCSMYELAYVNHSDIKRTLSSWIG 356 (370)
Q Consensus 316 al~~~p~---~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~ 356 (370)
++..... ......++.+++.+|....+ .++...++.+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~al 202 (434)
T 4b4t_Q 161 LLREFKKLDDKPSLVDVHLLESKVYHKLRN--LAKSKASLTAAR 202 (434)
T ss_dssp HHHHHTTSSCSTHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHhCc--HHHHHHHHHHHH
Confidence 8876322 12235677888888875444 566666655544
No 197
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.05 E-value=3.4e-10 Score=83.97 Aligned_cols=63 Identities=16% Similarity=0.106 Sum_probs=41.7
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 261 NKALIYLVGKDYVSAVREYEECIERDYNDIV-AINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 261 ~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~-~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
..|.+++..|++++|+..|+++++.+|+++. +++++|.++...|++++|++.|+++++.+|++
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 68 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 4566666666666666666666666666666 66666666666666666666666666666665
No 198
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.04 E-value=1.3e-09 Score=97.98 Aligned_cols=165 Identities=12% Similarity=0.061 Sum_probs=122.4
Q ss_pred HHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 017532 124 WLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGR 203 (370)
Q Consensus 124 ~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 203 (370)
.+.+.+....|+.++|+..+...+...+. . . ..+++..++.+++.+|+.+.|...++++.+.
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~------~----~--------~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~ 165 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGIDNDEA------E----G--------TTELLLLAIEVALLNNNVSTASTIFDNYTNA 165 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSSCS------T----T--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCC------c----C--------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 45666667789999888877664321110 0 0 0134457788999999999999999999888
Q ss_pred CCCC----CHHHHHHH--HHHHHHcC--CHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHH
Q 017532 204 GNGL----DPILVSKL--GFIQMQVG--DLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSA 275 (370)
Q Consensus 204 ~~~~----~~~~~~~l--g~~~~~~g--~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA 275 (370)
+| + +..++..+ |++.+..| ++.+|...|+++.... .+... ...+.+ +++.+|++++|
T Consensus 166 ~~-d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~----------p~~~~-~~lLln---~~~~~g~~~eA 230 (310)
T 3mv2_B 166 IE-DTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF----------PTWKT-QLGLLN---LHLQQRNIAEA 230 (310)
T ss_dssp SC-HHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS----------CSHHH-HHHHHH---HHHHHTCHHHH
T ss_pred Cc-cccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC----------CCccc-HHHHHH---HHHHcCCHHHH
Confidence 77 3 34444444 55566667 9999999999987321 11001 222333 89999999999
Q ss_pred HHHHHHHHhh----------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 276 VREYEECIER----------DYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 276 ~~~~~~~l~~----------~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
.+.++.+++. +|+++.++.|++.+...+|+ +|.++++++.+.+|+.
T Consensus 231 e~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~h 286 (310)
T 3mv2_B 231 QGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEH 286 (310)
T ss_dssp HHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCC
Confidence 9999988876 58899999999999999998 9999999999999986
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.01 E-value=8.8e-09 Score=99.18 Aligned_cols=118 Identities=9% Similarity=-0.105 Sum_probs=97.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh-----CCC--
Q 017532 216 GFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIER-----DYN-- 288 (370)
Q Consensus 216 g~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~-----~p~-- 288 (370)
+..+..+|++++|+..|++++++....-. ..+|.. ..++.++|.+|..+|+|++|+.++++++++ .|+
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg----~~Hp~~-a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp 390 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVFA----DTNLYV-LRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA 390 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTBC----TTSHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcC----CCCHHH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 44566899999999999999998776533 567887 899999999999999999999999999987 344
Q ss_pred -CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCcchhHHHHHHHHHHHH
Q 017532 289 -DIVAINNKALCLMYLRDLSDSIKVLENALER-----VPTVALNETLVVNLCSMYE 338 (370)
Q Consensus 289 -~~~~~~nla~~~~~~g~~~~A~~~l~~al~~-----~p~~~~~~~~~~nl~~lye 338 (370)
....++|+|.+|..+|++++|+..|++|+++ .|+......+.-+|+..+.
T Consensus 391 ~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~ 446 (490)
T 3n71_A 391 QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEM 446 (490)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999975 5665333455566766663
No 200
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.99 E-value=5.2e-09 Score=77.40 Aligned_cols=78 Identities=13% Similarity=0.034 Sum_probs=61.5
Q ss_pred HHHHHHHhhcCCccCCccchHHHHHH-HHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHH
Q 017532 232 FNRVEEMLNEGKFEDGLLSEVEFRNL-VSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSI 310 (370)
Q Consensus 232 ~~~a~~l~~~~~~~~~~~~~p~~~~~-~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~ 310 (370)
+++|+....... ..+|+. .. ++.++|.++...|++++|+..|+++++.+|++..++++ +.+.+++
T Consensus 16 ~~~A~~~~~~al-----~~~p~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~~~a~ 81 (99)
T 2kc7_A 16 IENALQALEEFL-----QTEPVG-KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMVMDIL 81 (99)
T ss_dssp HHHHHHHHHHHH-----HHCSST-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHH-----HHCCCc-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHHHHHH
Confidence 445665544421 233444 45 88999999999999999999999999999999988765 6788999
Q ss_pred HHHHHHHHhCCCc
Q 017532 311 KVLENALERVPTV 323 (370)
Q Consensus 311 ~~l~~al~~~p~~ 323 (370)
..|++++..+|++
T Consensus 82 ~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 82 NFYNKDMYNQLEH 94 (99)
T ss_dssp HHHCCTTHHHHCC
T ss_pred HHHHHHhccCccc
Confidence 9999998888875
No 201
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.93 E-value=7.9e-09 Score=77.03 Aligned_cols=70 Identities=16% Similarity=0.052 Sum_probs=51.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHH
Q 017532 204 GNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECI 283 (370)
Q Consensus 204 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l 283 (370)
+| .++.+++.+|.++...|++++|+.+|++++++.++. ..++.++|.++...|++++|+..|++++
T Consensus 3 ~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------------~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 3 DP-EDPFTRYALAQEHLKHDNASRALALFEELVETDPDY-------------VGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------------THHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred Cc-cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46 677778888888888888888888888888654432 4567778888888888888888888887
Q ss_pred hhCC
Q 017532 284 ERDY 287 (370)
Q Consensus 284 ~~~p 287 (370)
++.|
T Consensus 69 ~l~~ 72 (100)
T 3ma5_A 69 EVAR 72 (100)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 7654
No 202
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.92 E-value=1.1e-08 Score=96.92 Aligned_cols=95 Identities=14% Similarity=-0.014 Sum_probs=83.6
Q ss_pred HHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh-----CC---CCHH
Q 017532 220 MQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIER-----DY---NDIV 291 (370)
Q Consensus 220 ~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~-----~p---~~~~ 291 (370)
...|++++|+..|++++++....-. ..+|.. ..++.++|.+|..+|+|++|+.+|++++++ .| +...
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg----~~Hp~~-a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 383 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFE----DSNVYM-LHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVAS 383 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBC----TTSHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccC----hhchHH-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 3578999999999999998776433 567887 899999999999999999999999999987 34 4457
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 292 AINNKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 292 ~~~nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
.++|+|.+|..+|++++|+..|++|+++
T Consensus 384 ~l~nLa~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 384 MWLKLGRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 8999999999999999999999999886
No 203
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.90 E-value=2.1e-08 Score=95.11 Aligned_cols=120 Identities=11% Similarity=-0.066 Sum_probs=97.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC----CCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccch
Q 017532 179 CLIGYHLSSKEYNVCFDLMNESIGRGN----GLDP---ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSE 251 (370)
Q Consensus 179 ~la~~~~~~g~~~~A~~~~~~~l~~~~----~~~~---~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~ 251 (370)
....-+...|+|++|+..+++++++.. ..++ .++.++|.+|..+|++++|+.++++++.+...... ..+
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg----~~H 367 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFP----GSH 367 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSC----SSC
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcC----CCC
Confidence 334556678999999999999997643 1555 45689999999999999999999999988665322 568
Q ss_pred HHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCH---HHHHHHHHHHHHh
Q 017532 252 VEFRNLVSRNKALIYLVGKDYVSAVREYEECIER-----DYNDI---VAINNKALCLMYL 303 (370)
Q Consensus 252 p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~-----~p~~~---~~~~nla~~~~~~ 303 (370)
|.. +..++++|.+|..+|++++|+..|++++++ .|+++ .++++++.+....
T Consensus 368 p~~-a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 368 PVR-GVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred hHH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 888 899999999999999999999999999987 46665 5667777776543
No 204
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.85 E-value=1.1e-07 Score=86.96 Aligned_cols=138 Identities=9% Similarity=-0.045 Sum_probs=100.6
Q ss_pred HHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---C-CHHHHHHHHHHHHHHhhcCCccCCcc
Q 017532 177 LNCLIGYHLSSK---EYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQV---G-DLEGAKKSFNRVEEMLNEGKFEDGLL 249 (370)
Q Consensus 177 ~~~la~~~~~~g---~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~---g-~~~~A~~~~~~a~~l~~~~~~~~~~~ 249 (370)
++..|..++..+ +..+|+.+|+++++.+| +.+.++..++.++... + ..........++.+..... .
T Consensus 199 l~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP-~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~------~ 271 (372)
T 3ly7_A 199 NFYQAHDYLLHGDDKSLNRASELLGEIVQSSP-EFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL------P 271 (372)
T ss_dssp HHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC------G
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc------c
Confidence 345555555544 45899999999999999 9999998888777532 1 1112222223333211111 1
Q ss_pred chHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 250 SEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 250 ~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
.+|.. ..++..+|..+...|++++|+..++++++++| ++.++..+|.++...|++++|++.|++|+.++|..
T Consensus 272 ~~~~~-a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 272 ELNNL-SIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp GGTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred cCCcC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 22222 45566688888889999999999999999997 47888999999999999999999999999999975
No 205
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.84 E-value=2.2e-08 Score=94.93 Aligned_cols=102 Identities=9% Similarity=0.023 Sum_probs=86.6
Q ss_pred HhcCCHHHHHHHHHHHHhC-----CCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHH
Q 017532 185 LSSKEYNVCFDLMNESIGR-----GNGLDP---ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRN 256 (370)
Q Consensus 185 ~~~g~~~~A~~~~~~~l~~-----~~~~~~---~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~ 256 (370)
...|+|++|+.++++++++ ++ +++ .++.+||.+|..+|++++|+.++++++.+...... ..+|+. +
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~-~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG----~~Hp~~-a 382 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFED-SNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYP----VYSLNV-A 382 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCT-TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC----SSCHHH-H
T ss_pred hhccCHHHHHHHHHHHHHHhhCccCh-hchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcC----CCChHH-H
Confidence 3568999999999999874 44 565 45689999999999999999999999988765422 568888 8
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHH
Q 017532 257 LVSRNKALIYLVGKDYVSAVREYEECIER-----DYNDIVA 292 (370)
Q Consensus 257 ~~~~~~g~~~~~~g~~~eA~~~~~~~l~~-----~p~~~~~ 292 (370)
..++++|.+|..+|++++|+..|++++++ .|+++.+
T Consensus 383 ~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 383 SMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 99999999999999999999999999887 5777644
No 206
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.81 E-value=6.6e-08 Score=91.69 Aligned_cols=114 Identities=11% Similarity=-0.130 Sum_probs=90.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh-----CCCC---
Q 017532 218 IQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIER-----DYND--- 289 (370)
Q Consensus 218 ~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~-----~p~~--- 289 (370)
-+..+|++++|+..|++++++....-. ..+|.. ..++.++|.+|..+|+|++|+.++++++++ .|++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg----~~h~~~-~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~ 370 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLP----DINIYQ-LKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVR 370 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCC----TTSHHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCC----ccchHH-HHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHH
Confidence 345689999999999999976554322 567777 889999999999999999999999999977 3444
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCcchhHHHHHHHHHH
Q 017532 290 IVAINNKALCLMYLRDLSDSIKVLENALER-----VPTVALNETLVVNLCSM 336 (370)
Q Consensus 290 ~~~~~nla~~~~~~g~~~~A~~~l~~al~~-----~p~~~~~~~~~~nl~~l 336 (370)
...++|+|.+|..+|++++|+..+++|+++ .|+......+.-||+..
T Consensus 371 a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~ 422 (429)
T 3qwp_A 371 GVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEEC 422 (429)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 478999999999999999999999999876 55543223344444443
No 207
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.72 E-value=1e-06 Score=85.24 Aligned_cols=162 Identities=12% Similarity=0.008 Sum_probs=124.4
Q ss_pred cccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcC---------CHHHHHHHHHHHH
Q 017532 131 IKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSK---------EYNVCFDLMNESI 201 (370)
Q Consensus 131 ~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---------~~~~A~~~~~~~l 201 (370)
+..|+.++|+..+.++...- + ..+ ..+++.+...+...+ +.+.|..+|+++.
T Consensus 37 ~k~G~~~~A~~lf~~M~~~G---v---~pd-------------~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~ 97 (501)
T 4g26_A 37 SKKGDVLEALRLYDEARRNG---V---QLS-------------QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMI 97 (501)
T ss_dssp TTSCCHHHHHHHHHHHHHHT---C---CCC-------------HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHcC---C---CCC-------------HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHH
Confidence 77899999998888775320 0 000 133445555554433 4789999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHH
Q 017532 202 GRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEE 281 (370)
Q Consensus 202 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~ 281 (370)
..+...+..+++.+...+.+.|++++|.+.|+++.+. ...|+. ..+..+-..+.+.|+.++|.+.|++
T Consensus 98 ~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~----------g~~Pd~--~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 98 VDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAF----------GIQPRL--RSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----------TCCCCH--HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----------CCCCcc--ceehHHHHHHHHCCCHHHHHHHHHH
Confidence 8876578999999999999999999999999999852 234443 3344455566699999999999999
Q ss_pred HHhhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 282 CIERD-YNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 282 ~l~~~-p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
+.+.. ..+..+|+.+..++.+.|+.++|.++|+++-+..-.+
T Consensus 166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~p 208 (501)
T 4g26_A 166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQV 208 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSB
T ss_pred HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCc
Confidence 99875 4578899999999999999999999999998765443
No 208
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.72 E-value=9.9e-07 Score=85.35 Aligned_cols=165 Identities=11% Similarity=-0.006 Sum_probs=125.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHhhcCCccCC
Q 017532 177 LNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVG---------DLEGAKKSFNRVEEMLNEGKFEDG 247 (370)
Q Consensus 177 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g---------~~~~A~~~~~~a~~l~~~~~~~~~ 247 (370)
+..+...+++.|+.++|+.+|+++.+.+-..+..+++.+-.++...| ++++|.+.|+++.+.
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~--------- 99 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD--------- 99 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT---------
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh---------
Confidence 44556788899999999999999998876578888888877776554 378999999998742
Q ss_pred ccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchh
Q 017532 248 LLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD-YNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALN 326 (370)
Q Consensus 248 ~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~-p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~ 326 (370)
...|+. ..+..+-..+.+.|++++|.+.|+++.+.. ..+..+|+.+..++++.|++++|.+.|+++.+..-.+.
T Consensus 100 -G~~Pd~--~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd-- 174 (501)
T 4g26_A 100 -KVVPNE--ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPE-- 174 (501)
T ss_dssp -TCCCCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC--
T ss_pred -CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC--
Confidence 234443 345556667779999999999999998875 55789999999999999999999999999998754441
Q ss_pred HHHHHHHHHHHHhccCCchhhHHHHHHHHhh
Q 017532 327 ETLVVNLCSMYELAYVNHSDIKRTLSSWIGR 357 (370)
Q Consensus 327 ~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~ 357 (370)
...+..|-..| +..+..++...+++....
T Consensus 175 ~~ty~~Li~~~--~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 175 EPELAALLKVS--MDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp HHHHHHHHHHH--HHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hhCCCHHHHHHHHHHHHH
Confidence 22233333343 345667888888777653
No 209
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.70 E-value=1.9e-07 Score=70.04 Aligned_cols=84 Identities=17% Similarity=0.069 Sum_probs=69.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 017532 208 DPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDY 287 (370)
Q Consensus 208 ~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p 287 (370)
++.-.+.+|..+++.|+++.|+.+|++|++..+... ...+.. ..++..+|.+++++|++++|+..+++++.++|
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~-----~~~~~~-~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGE-----ISTIDK-VSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-----CCSSCH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccC-----CCcccH-HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 345568899999999999999999999998765421 011112 56788899999999999999999999999999
Q ss_pred CCHHHHHHHH
Q 017532 288 NDIVAINNKA 297 (370)
Q Consensus 288 ~~~~~~~nla 297 (370)
++..+.+|++
T Consensus 78 ~~~~~~~n~~ 87 (104)
T 2v5f_A 78 EHQRANGNLK 87 (104)
T ss_dssp TCHHHHHHHH
T ss_pred CCHHHHhhHH
Confidence 9999998887
No 210
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.67 E-value=2.6e-07 Score=69.35 Aligned_cols=73 Identities=14% Similarity=0.133 Sum_probs=65.9
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHH
Q 017532 259 SRNKALIYLVGKDYVSAVREYEECIERD-------YNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVV 331 (370)
Q Consensus 259 ~~~~g~~~~~~g~~~eA~~~~~~~l~~~-------p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~ 331 (370)
.+.+|..++..|+|..|+.+|++++... +..+.++.++|.++.++|++++|+..++++++.+|++ ..+..
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~---~~~~~ 84 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH---QRANG 84 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHh
Confidence 4679999999999999999999999863 3456899999999999999999999999999999998 77778
Q ss_pred HHH
Q 017532 332 NLC 334 (370)
Q Consensus 332 nl~ 334 (370)
|+.
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 887
No 211
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.67 E-value=1.3e-07 Score=69.39 Aligned_cols=68 Identities=10% Similarity=-0.074 Sum_probs=62.3
Q ss_pred HHHHHhHHHHHHHcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 256 NLVSRNKALIYLVGKD---YVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~---~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
..++..+|.+++..++ .++|...|+++++.+|+++.+++.+|..++..|++++|+.+|+++++.+|..
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 3457778999877766 7999999999999999999999999999999999999999999999999983
No 212
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.60 E-value=3.3e-06 Score=74.28 Aligned_cols=109 Identities=13% Similarity=-0.028 Sum_probs=89.8
Q ss_pred hCCCCCCHHHHHHHHHHHHH-----cC------CHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHc-
Q 017532 202 GRGNGLDPILVSKLGFIQMQ-----VG------DLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVG- 269 (370)
Q Consensus 202 ~~~~~~~~~~~~~lg~~~~~-----~g------~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~- 269 (370)
+.++ .++..++..|.++.. .| ....|...+++++++.++ .. . ..++..+|.+|...
T Consensus 146 ~~~~-~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~-------~~---~-GsA~~~LG~lY~~vP 213 (301)
T 3u64_A 146 RCTR-VDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPS-------YQ---E-GAVWNVLTKFYAAAP 213 (301)
T ss_dssp TCCG-GGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTT-------HH---H-HHHHHHHHHHHHHSC
T ss_pred HcCc-cccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCC-------cc---c-CHHHHHHHHHHHhCC
Confidence 4456 788888777766533 23 357889999999977554 11 1 56788899999995
Q ss_pred ----CCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhCCC
Q 017532 270 ----KDYVSAVREYEECIERDYND-IVAINNKALCLMYL-RDLSDSIKVLENALERVPT 322 (370)
Q Consensus 270 ----g~~~eA~~~~~~~l~~~p~~-~~~~~nla~~~~~~-g~~~~A~~~l~~al~~~p~ 322 (370)
|+.++|..+|+++++++|+. ..+++.+|..++.. |+.++|.+++++++..+|.
T Consensus 214 p~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 214 ESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp TTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred CccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 99999999999999999975 99999999999985 9999999999999999887
No 213
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.59 E-value=9.5e-06 Score=81.10 Aligned_cols=240 Identities=10% Similarity=0.022 Sum_probs=159.5
Q ss_pred HHHHHHHHhhhccccCCchHHHHHHHHHHHHHhhhcCHHHHH-HHhhhcCCCCCCCCcccccCCCCCCCCCcccchhHHH
Q 017532 46 TIIDNVSRARSQSLLTQPHHHLTYLAYNTLALMKLRRFDEAQ-QELDSLEDFNSSGYQYETYPHIYPNRTGSMVPFSLRW 124 (370)
Q Consensus 46 ~Ai~~~~~~~~~~~~~~P~~~~~~~~~~~~al~~l~~~~~A~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 124 (370)
.+...|++++. ..|.....|+.+ +.-+...|..++|. ..+.+..... |. + ..+.+
T Consensus 327 Rv~~~Ye~aL~----~~p~~~~lW~~y-a~~~~~~~~~~~a~r~il~rAi~~~-------------P~---s---~~Lwl 382 (679)
T 4e6h_A 327 RMTYVYMQAAQ----HVCFAPEIWFNM-ANYQGEKNTDSTVITKYLKLGQQCI-------------PN---S---AVLAF 382 (679)
T ss_dssp HHHHHHHHHHH----HTTTCHHHHHHH-HHHHHHHSCCTTHHHHHHHHHHHHC-------------TT---C---HHHHH
T ss_pred HHHHHHHHHHH----HcCCCHHHHHHH-HHHHHhcCcHHHHHHHHHHHHHHhC-------------CC---C---HHHHH
Confidence 34455666543 357655566554 44456678888886 8777774221 10 1 12344
Q ss_pred HHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhh--HHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 017532 125 LYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKL--EESVKSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIG 202 (370)
Q Consensus 125 l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 202 (370)
..+.+.-..|+.+.|.+.+..++.........-..... .+...........++...+....+.|+.+.|..+|.++++
T Consensus 383 ~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~ 462 (679)
T 4e6h_A 383 SLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR 462 (679)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44554456788888888887777654322211000000 0001111111233455666777778999999999999998
Q ss_pred C-CCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHH
Q 017532 203 R-GNGLDPILVSKLGFIQMQVG-DLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYE 280 (370)
Q Consensus 203 ~-~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~ 280 (370)
. .+ ....++...+.+-.+.| +++.|.+.|+++++..++ ++ ..+...+......|+.+.|..+|+
T Consensus 463 ~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~---------~~----~~w~~y~~fe~~~~~~~~AR~lfe 528 (679)
T 4e6h_A 463 LKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKYFAT---------DG----EYINKYLDFLIYVNEESQVKSLFE 528 (679)
T ss_dssp TGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT---------CH----HHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC---------ch----HHHHHHHHHHHhCCCHHHHHHHHH
Confidence 7 44 45567777777777765 599999999999987665 23 345566777788899999999999
Q ss_pred HHHhhCCC---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 281 ECIERDYN---DIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 281 ~~l~~~p~---~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
+++...|+ ...+|......-...|+.+.+.++.+++.+..|+.
T Consensus 529 ral~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 529 SSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp HHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 99998873 44566667776778899999999999999999985
No 214
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.58 E-value=5.4e-07 Score=71.70 Aligned_cols=87 Identities=16% Similarity=0.122 Sum_probs=73.4
Q ss_pred CHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcC---CHHHHHHHHHHHHhhC-C-CCHHHHHHHHH
Q 017532 224 DLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGK---DYVSAVREYEECIERD-Y-NDIVAINNKAL 298 (370)
Q Consensus 224 ~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g---~~~eA~~~~~~~l~~~-p-~~~~~~~nla~ 298 (370)
++..+.+.|++.....+ .+ .++.++.|.++...+ +..+++..|+.+++.+ | ++...++++|+
T Consensus 13 ~l~~~~~~y~~e~~~~~---------~~----~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv 79 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS---------VS----KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 79 (152)
T ss_dssp HHHHHHHHHHHHHHTTC---------CC----HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCC---------Cc----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHH
Confidence 45667777877764211 12 567788999999988 7779999999999998 7 56899999999
Q ss_pred HHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 299 CLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 299 ~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
.++++|+|++|+++++++++.+|++
T Consensus 80 ~~~kl~~Y~~A~~y~~~lL~ieP~n 104 (152)
T 1pc2_A 80 GNYRLKEYEKALKYVRGLLQTEPQN 104 (152)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHccCHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999986
No 215
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.58 E-value=1.3e-06 Score=69.57 Aligned_cols=97 Identities=8% Similarity=-0.020 Sum_probs=81.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHH
Q 017532 189 EYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVG---DLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALI 265 (370)
Q Consensus 189 ~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~ 265 (370)
....+...|++.+..++ .+..+.+.+|+++.+.+ ++++++..++..++. ..|..+.+.++++|..
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-----------~~p~~~rd~lY~LAv~ 80 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-----------GSKEEQRDYVFYLAVG 80 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-----------SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----------CCccchHHHHHHHHHH
Confidence 34566777888888888 89999999999999998 777999999999952 1253347889999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 017532 266 YLVGKDYVSAVREYEECIERDYNDIVAINNKA 297 (370)
Q Consensus 266 ~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla 297 (370)
+++.|+|++|..+++++++.+|++..+..-+-
T Consensus 81 ~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~ 112 (152)
T 1pc2_A 81 NYRLKEYEKALKYVRGLLQTEPQNNQAKELER 112 (152)
T ss_dssp HHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 99999999999999999999999988766543
No 216
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.53 E-value=2.9e-06 Score=66.97 Aligned_cols=98 Identities=13% Similarity=-0.011 Sum_probs=83.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhcCCccCCccchHHHH
Q 017532 180 LIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQ----VGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFR 255 (370)
Q Consensus 180 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~ 255 (370)
+|.+|...+.+++|+.+|+++.+. .++.+.+.+|.+|.. .+|+++|+.+|+++.+. .+
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~---g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-----------g~---- 92 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL---NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL-----------ND---- 92 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-----------TC----
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC-----------CC----
Confidence 888888889999999999999986 568999999999999 89999999999999853 12
Q ss_pred HHHHHhHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 017532 256 NLVSRNKALIYLV----GKDYVSAVREYEECIERDYNDIVAINNKA 297 (370)
Q Consensus 256 ~~~~~~~g~~~~~----~g~~~eA~~~~~~~l~~~p~~~~~~~nla 297 (370)
..+..++|.+|.. .+++++|+.+|+++.+.. ++.+..+++
T Consensus 93 ~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~ 136 (138)
T 1klx_A 93 QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGILN 136 (138)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence 4567889999999 999999999999999874 455555554
No 217
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.51 E-value=7.4e-06 Score=81.87 Aligned_cols=173 Identities=14% Similarity=0.077 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----------CCC-----------CHHHHHHHHHHHHHcCCHHHHHHHH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRG-----------NGL-----------DPILVSKLGFIQMQVGDLEGAKKSF 232 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----------~~~-----------~~~~~~~lg~~~~~~g~~~~A~~~~ 232 (370)
.++...+......|+++.|..+|++++... | . ...+|...++...+.|+.+.|.+.|
T Consensus 379 ~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p-~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf 457 (679)
T 4e6h_A 379 VLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDP-TNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIF 457 (679)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccC-cchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 345667788888999999999999998752 3 2 2346777788888899999999999
Q ss_pred HHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 017532 233 NRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGK-DYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIK 311 (370)
Q Consensus 233 ~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g-~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~ 311 (370)
.+|+...+. .. ..++...|.+-+..| +++.|...|+++++..|+++..+...+......|+.+.|..
T Consensus 458 ~~A~~~~~~--------~~----~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~ 525 (679)
T 4e6h_A 458 GKCRRLKKL--------VT----PDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKS 525 (679)
T ss_dssp HHHHHTGGG--------SC----THHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHhcCC--------CC----hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHH
Confidence 999864221 11 234555666666654 59999999999999999999999899998889999999999
Q ss_pred HHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCCC
Q 017532 312 VLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDD 362 (370)
Q Consensus 312 ~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d~ 362 (370)
.|++++...|+... ...++..-.-||.. .|+.+...++.....+.-|++
T Consensus 526 lferal~~~~~~~~-~~~lw~~~~~fE~~-~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 526 LFESSIDKISDSHL-LKMIFQKVIFFESK-VGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp HHHHHTTTSSSTTH-HHHHHHHHHHHHHH-TCCSHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHhcCCHHH-HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCC
Confidence 99999999884211 33344444445543 344567777777776655554
No 218
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.44 E-value=1.4e-06 Score=63.84 Aligned_cols=72 Identities=3% Similarity=-0.031 Sum_probs=59.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHH
Q 017532 204 GNGLDPILVSKLGFIQMQVGD---LEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYE 280 (370)
Q Consensus 204 ~~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~ 280 (370)
+| .++..+..+|.+++..++ .++|...+++++++.++. ..+++.+|..++..|+|++|+.+|+
T Consensus 2 ~p-~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~-------------~rA~~~lg~~~~~~g~y~~Ai~~w~ 67 (93)
T 3bee_A 2 NA-VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN-------------EAALSLIANDHFISFRFQEAIDTWV 67 (93)
T ss_dssp CC-CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC-------------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CC-CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC-------------HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45 788899999998876666 689999999999765543 5677889999999999999999999
Q ss_pred HHHhhCCCC
Q 017532 281 ECIERDYND 289 (370)
Q Consensus 281 ~~l~~~p~~ 289 (370)
++++.+|.+
T Consensus 68 ~~l~~~p~~ 76 (93)
T 3bee_A 68 LLLDSNDPN 76 (93)
T ss_dssp HHHTCCCTT
T ss_pred HHHhhCCCC
Confidence 999998874
No 219
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.20 E-value=2.3e-05 Score=62.81 Aligned_cols=121 Identities=17% Similarity=0.151 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC--
Q 017532 209 PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD-- 286 (370)
Q Consensus 209 ~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~-- 286 (370)
-.++..-....+..|.|+.|+-....++.+...+. ....|..+..+...+|..++..|+|..|...|++++...
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~----~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~ 95 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNP----ELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKA 95 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHST----TSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCc----ccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 34455667778889999999999999888865532 134677778889999999999999999999999987652
Q ss_pred -CC----------------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Q 017532 287 -YN----------------------DIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMY 337 (370)
Q Consensus 287 -p~----------------------~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~ly 337 (370)
+. +..+.+.+|.|+...|++++|+..++.+-...-+ ..+..-|+.+|
T Consensus 96 l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt----~kvnm~LakLy 165 (167)
T 3ffl_A 96 LSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRT----PKINMLLANLY 165 (167)
T ss_dssp C--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCC----HHHHHHHHHHC
T ss_pred HhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcC----HHHHHHHHHHh
Confidence 11 1267899999999999999999999886444332 45666677776
No 220
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.11 E-value=4.7e-05 Score=69.66 Aligned_cols=141 Identities=16% Similarity=0.097 Sum_probs=94.8
Q ss_pred HHhCCCCCCHHHH--HHHHHHHHHcCC---HHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCC---
Q 017532 200 SIGRGNGLDPILV--SKLGFIQMQVGD---LEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKD--- 271 (370)
Q Consensus 200 ~l~~~~~~~~~~~--~~lg~~~~~~g~---~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~--- 271 (370)
+....| .+..+| +..|+-++..++ +.+|+.+|++++++.|+ + ..++..++.+++....
T Consensus 186 ~~~~~p-~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~------------~-a~A~A~la~a~~~~~~~~~ 251 (372)
T 3ly7_A 186 LQKILP-HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE------------F-TYARAEKALVDIVRHSQHP 251 (372)
T ss_dssp HHHHSC-SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT------------C-HHHHHHHHHHHHHHHHHSC
T ss_pred HhccCC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC------------C-HHHHHHHHHHHHHHhccCC
Confidence 334455 555444 667888877665 47999999999976544 3 5555556666542111
Q ss_pred ----HHHHH-HHHHH--HHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCc
Q 017532 272 ----YVSAV-REYEE--CIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNH 344 (370)
Q Consensus 272 ----~~eA~-~~~~~--~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~ 344 (370)
..+++ ..++. ++..+|.++.++.-++..+...|++++|+..+++++.++|+ ...+..++.++++..+
T Consensus 252 ~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s----~~a~~llG~~~~~~G~-- 325 (372)
T 3ly7_A 252 LDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS----WLNYVLLGKVYEMKGM-- 325 (372)
T ss_dssp CCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHTTC--
T ss_pred CchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHCCC--
Confidence 11111 12222 22557999999999999999999999999999999999975 4456788899987544
Q ss_pred hhhHHHHHHHHhhhCC
Q 017532 345 SDIKRTLSSWIGRVAP 360 (370)
Q Consensus 345 ~~~~~~ll~~~~~~~~ 360 (370)
.+...+....--+..|
T Consensus 326 ~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 326 NREAADAYLTAFNLRP 341 (372)
T ss_dssp HHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhcCC
Confidence 5666666655444444
No 221
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.99 E-value=0.0002 Score=54.84 Aligned_cols=94 Identities=7% Similarity=-0.062 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHH
Q 017532 191 NVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEG---AKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYL 267 (370)
Q Consensus 191 ~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~---A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~ 267 (370)
..+...|++....++ ....+.+.+|+++.+...... ++..++...+ ...|..+.+..+.+|..++
T Consensus 18 ~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~-----------~~~p~~~Rd~lY~LAvg~y 85 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP-----------KGSKEEQRDYVFYLAVGNY 85 (126)
T ss_dssp HHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT-----------TSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-----------cCCcchHHHHHHHHHHHHH
Confidence 334455555555555 666777777777777666555 6666666552 1124333556666777777
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 017532 268 VGKDYVSAVREYEECIERDYNDIVAINNK 296 (370)
Q Consensus 268 ~~g~~~eA~~~~~~~l~~~p~~~~~~~nl 296 (370)
+.|+|++|..+++.+++.+|+|..+..-.
T Consensus 86 klg~Y~~A~~~~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 86 RLKEYEKALKYVRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 77777777777777777777776655433
No 222
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=97.86 E-value=0.00041 Score=71.04 Aligned_cols=134 Identities=9% Similarity=0.009 Sum_probs=100.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC-
Q 017532 208 DPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD- 286 (370)
Q Consensus 208 ~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~- 286 (370)
...+++.+-..+++.|++++|.+.|+++.+.... ...|+. ..|..+-..+++.|+.++|.+.|+++.+..
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~k-------G~~Pdv--vTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~ 196 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQK-------RKLLTL--DMYNAVMLGWARQGAFKELVYVLFMVKDAGL 196 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHH-------HTTCCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhc-------CCCCCH--hHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 3457888999999999999999999887643221 234443 334445555569999999999999999875
Q ss_pred CCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCC
Q 017532 287 YNDIVAINNKALCLMYLRDL-SDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPD 361 (370)
Q Consensus 287 p~~~~~~~nla~~~~~~g~~-~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d 361 (370)
..|..+|+.+..++++.|+. ++|.+.|+++.+..-.+ +.+.++-. + ....+..+++.|.+..|+
T Consensus 197 ~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~P---D~vtY~~l-l-------~~~eR~~vL~~Vrkv~P~ 261 (1134)
T 3spa_A 197 TPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKL---QALFTAVL-L-------SEEDRATVLKAVHKVKPT 261 (1134)
T ss_dssp CCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCS---HHHHHHSC-C-------CHHHHHHHHHHHGGGCCC
T ss_pred CCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCC---Chhhcccc-c-------ChhhHHHHHHHHHHhCcc
Confidence 56899999999999999985 78999999999987665 55555421 1 246667788888877553
No 223
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.86 E-value=0.0002 Score=54.88 Aligned_cols=89 Identities=15% Similarity=0.090 Sum_probs=72.2
Q ss_pred cCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHH---HHHHHHHHHhhC-C-CCHHHHHHH
Q 017532 222 VGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVS---AVREYEECIERD-Y-NDIVAINNK 296 (370)
Q Consensus 222 ~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~e---A~~~~~~~l~~~-p-~~~~~~~nl 296 (370)
...+..+...|++...... .. ..+.++.|.++....+..+ ++..++..+..+ | .....++.+
T Consensus 14 ~~~l~~~~~~y~~e~~~~~---------~s----~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~L 80 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGS---------VS----KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYL 80 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSC---------CC----HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCC---------Cc----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 3455667777777764211 11 4567889999999888888 999999999887 5 466899999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 297 ALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 297 a~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
|+.++++|+|++|+.+++.+++..|++
T Consensus 81 Avg~yklg~Y~~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 81 AVGNYRLKEYEKALKYVRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999986
No 224
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.84 E-value=6.5e-05 Score=66.12 Aligned_cols=87 Identities=8% Similarity=0.033 Sum_probs=73.7
Q ss_pred CHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHh
Q 017532 189 EYNVCFDLMNESIGRGNGL--DPILVSKLGFIQMQV-----GDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRN 261 (370)
Q Consensus 189 ~~~~A~~~~~~~l~~~~~~--~~~~~~~lg~~~~~~-----g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~ 261 (370)
....|...++++++++| . +..++..+|.+|.+. |+.++|.++|++++++.++. ..+ .++.
T Consensus 178 ~l~~A~a~lerAleLDP-~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~------~id------~~v~ 244 (301)
T 3u64_A 178 TVHAAVMMLERACDLWP-SYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH------DPD------HHIT 244 (301)
T ss_dssp HHHHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT------CSH------HHHH
T ss_pred hHHHHHHHHHHHHHhCC-CcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC------Cch------HHHH
Confidence 46789999999999999 7 567999999999995 99999999999999987752 133 3445
Q ss_pred HHHHHHH-cCCHHHHHHHHHHHHhhCCC
Q 017532 262 KALIYLV-GKDYVSAVREYEECIERDYN 288 (370)
Q Consensus 262 ~g~~~~~-~g~~~eA~~~~~~~l~~~p~ 288 (370)
.|..++. .|++++|...+++++..+|.
T Consensus 245 YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 245 YADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 7888877 59999999999999998876
No 225
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.76 E-value=0.00082 Score=52.72 Aligned_cols=114 Identities=12% Similarity=-0.032 Sum_probs=92.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHH
Q 017532 203 RGNGLDPILVSKLGFIQMQVGDL------EGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAV 276 (370)
Q Consensus 203 ~~~~~~~~~~~~lg~~~~~~g~~------~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~ 276 (370)
..| .+++.|..........|+. ++-++.|++|+...|.... ...... ...|+..+.. ...++.++|.
T Consensus 8 ~~p-~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~----~~wrrY-I~LWIrYA~~-~ei~D~d~aR 80 (161)
T 4h7y_A 8 MMA-NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKY----GQNESF-ARIQVRFAEL-KAIQEPDDAR 80 (161)
T ss_dssp --C-CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGG----TTCHHH-HHHHHHHHHH-HHHHCGGGCH
T ss_pred eCC-CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCcccc----ccHHHH-HHHHHHHHHH-HHhcCHHHHH
Confidence 356 8888888878888888998 8889999999987654311 222333 6667777755 5669999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 277 REYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 277 ~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
..|+.++..+...+.+|...|.--.+.|+++.|.+.+.+++.+.|.+
T Consensus 81 ~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 81 DYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 99999999888888899999998899999999999999999999986
No 226
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.48 E-value=0.00093 Score=53.47 Aligned_cols=119 Identities=11% Similarity=-0.147 Sum_probs=78.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCC--
Q 017532 179 CLIGYHLSSKEYNVCFDLMNESIGRGNGLD---------PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDG-- 247 (370)
Q Consensus 179 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~---------~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~-- 247 (370)
.-+..++..|.|+.|+.....++.... ++ ..++..+|.+++..|+|..|...|++++.+.+.-.....
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~-~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~ 103 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSN-NNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVR 103 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH-HSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhc-CCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 344556777999999999888766543 22 247789999999999999999999999887663211000
Q ss_pred -----ccchH---HH--HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 017532 248 -----LLSEV---EF--RNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALC 299 (370)
Q Consensus 248 -----~~~~p---~~--~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~ 299 (370)
....| +. ..++.+.++.|+++.|++.+|+..++.+-.. -..+.+...+|..
T Consensus 104 ~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k-~Rt~kvnm~LakL 164 (167)
T 3ffl_A 104 PSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR-QRTPKINMLLANL 164 (167)
T ss_dssp -------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG-GCCHHHHHHHHHH
T ss_pred ccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch-hcCHHHHHHHHHH
Confidence 00001 00 1356677999999999999999988764211 2344444444443
No 227
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.45 E-value=0.012 Score=56.57 Aligned_cols=130 Identities=15% Similarity=0.048 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCc------cCCc---------------
Q 017532 190 YNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKF------EDGL--------------- 248 (370)
Q Consensus 190 ~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~------~~~~--------------- 248 (370)
.+....+|++++...| ..+.+|...+..+.+.|++++|...|++++.. |.+.. ....
T Consensus 195 ~~Rv~~~ye~al~~~p-~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~ 272 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFY-YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMG 272 (493)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhh
Confidence 3456789999999889 88999999999999999999999999999987 65421 0000
Q ss_pred -------cchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhC
Q 017532 249 -------LSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLR-DLSDSIKVLENALERV 320 (370)
Q Consensus 249 -------~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g-~~~~A~~~l~~al~~~ 320 (370)
...+.. ..+|...+......|..+.|...|+++ ...+....++...|..-...+ +.+.|.+.|+.+++..
T Consensus 273 ~~~~~~~~~~~~~-~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~ 350 (493)
T 2uy1_A 273 EAESAEKVFSKEL-DLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH 350 (493)
T ss_dssp --------CHHHH-HHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC
T ss_pred ccchhhhhccccc-HHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence 001111 345666666666788899999999999 433345667766676666666 5999999999999988
Q ss_pred CCc
Q 017532 321 PTV 323 (370)
Q Consensus 321 p~~ 323 (370)
|+.
T Consensus 351 ~~~ 353 (493)
T 2uy1_A 351 PDS 353 (493)
T ss_dssp TTC
T ss_pred CCC
Confidence 875
No 228
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.27 E-value=0.019 Score=55.16 Aligned_cols=127 Identities=12% Similarity=0.050 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH------------------------------------
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGF------------------------------------ 217 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~------------------------------------ 217 (370)
..++...+..+...|+.+.|..+|++++.. | .+..++...+.
T Consensus 213 ~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P-~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~ 290 (493)
T 2uy1_A 213 EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-S-DGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRI 290 (493)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-C-CcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHH
Confidence 456777788888999999999999999999 8 55433322221
Q ss_pred ----HHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHH
Q 017532 218 ----IQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGK-DYVSAVREYEECIERDYNDIVA 292 (370)
Q Consensus 218 ----~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g-~~~eA~~~~~~~l~~~p~~~~~ 292 (370)
...+.|+++.|...|+++ + .+. .. ..++...+.+-+..| +.+.|...|+.+++..|+++..
T Consensus 291 ~y~~~~~r~~~~~~AR~i~~~A-~-~~~--------~~----~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~ 356 (493)
T 2uy1_A 291 NHLNYVLKKRGLELFRKLFIEL-G-NEG--------VG----PHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLL 356 (493)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHH-T-TSC--------CC----HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHh-h-CCC--------CC----hHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHH
Confidence 222466788898999888 2 111 11 234444565555555 6999999999999999999988
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHH
Q 017532 293 INNKALCLMYLRDLSDSIKVLENA 316 (370)
Q Consensus 293 ~~nla~~~~~~g~~~~A~~~l~~a 316 (370)
+...+......|+.+.|...|+++
T Consensus 357 ~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 357 KEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888888888999999999999998
No 229
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.23 E-value=0.067 Score=49.47 Aligned_cols=125 Identities=13% Similarity=0.123 Sum_probs=94.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchH
Q 017532 178 NCLIGYHLSSKEYNVCFDLMNESIGRGNG-LDP----ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEV 252 (370)
Q Consensus 178 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~-~~~----~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p 252 (370)
..+|..|+..|+|.+|...+.++.+.-.. ++. ..+....++|...|++.++...|.++....... +.+|
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai------~~~p 176 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAI------YCPP 176 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS------CCCH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccC------CCCH
Confidence 47889999999999999999988764221 222 445667889999999999999999998775442 4678
Q ss_pred HHHHHHHHhHHHHHH-HcCCHHHHHHHHHHHHhhCC-C----CHHHHHHHHHHHHHhCCHHH
Q 017532 253 EFRNLVSRNKALIYL-VGKDYVSAVREYEECIERDY-N----DIVAINNKALCLMYLRDLSD 308 (370)
Q Consensus 253 ~~~~~~~~~~g~~~~-~~g~~~eA~~~~~~~l~~~p-~----~~~~~~nla~~~~~~g~~~~ 308 (370)
..++.+...-|..++ ..++|.+|...|-++.+... . ...+...++.|.+-+++..+
T Consensus 177 ~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~e 238 (394)
T 3txn_A 177 KVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDD 238 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHH
Confidence 887888888999999 89999999999999875421 1 12334446666666666433
No 230
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.16 E-value=0.005 Score=47.25 Aligned_cols=68 Identities=10% Similarity=-0.008 Sum_probs=58.5
Q ss_pred HHHHHhHHHHHHHcCCH---HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 256 NLVSRNKALIYLVGKDY---VSAVREYEECIERDYN-DIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~~---~eA~~~~~~~l~~~p~-~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
..+.++.|.++.+..+. .+++..++..+..+|. ....++.+|+.+.++|+|++|..+.+.+++..|++
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 34567778888777655 4689999999998885 46889999999999999999999999999999987
No 231
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.13 E-value=0.006 Score=47.43 Aligned_cols=68 Identities=10% Similarity=-0.009 Sum_probs=59.0
Q ss_pred HHHHHhHHHHHHHcCCHH---HHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 256 NLVSRNKALIYLVGKDYV---SAVREYEECIERDYN-DIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~~~---eA~~~~~~~l~~~p~-~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
..+.++.|.++....+.. +++..++..+..+|. ....++.+|+.++++|+|++|..+.+.+++..|++
T Consensus 39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 455677888888877655 689999999998885 45789999999999999999999999999999986
No 232
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=97.09 E-value=0.03 Score=44.73 Aligned_cols=106 Identities=8% Similarity=-0.005 Sum_probs=76.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhcCCcc---CCccchHH
Q 017532 179 CLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEE--MLNEGKFE---DGLLSEVE 253 (370)
Q Consensus 179 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~--l~~~~~~~---~~~~~~p~ 253 (370)
.++-.++-.|+|..|+-.+... +.....+..+.+|-...|+.+|+.+++..+. +.++..-| +.-..+|.
T Consensus 38 L~~I~LyyngEY~R~Lf~L~~l------NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~ 111 (242)
T 3kae_A 38 LMSIVLYLNGEYTRALFHLHKL------NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPG 111 (242)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTC------CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTT
T ss_pred hhhhhhhhcchHhHHHHHHHhc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccc
Confidence 4455677789999999887754 5567777779999999999999999999983 22221000 00012232
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI 290 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~ 290 (370)
.+...+..+|.++-..|+-+||+.+|......+|--+
T Consensus 112 DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~ 148 (242)
T 3kae_A 112 DEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFS 148 (242)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccc
Confidence 2345667799999999999999999999988876533
No 233
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=97.08 E-value=0.0046 Score=63.44 Aligned_cols=101 Identities=9% Similarity=-0.030 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccc
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGR---GNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLS 250 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~ 250 (370)
..+++.+...|++.|+.++|..++.++.+. +...+..+|+.+-..|++.|++++|.+.|+++.+. ..
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~----------G~ 196 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA----------GL 196 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----------TC
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc----------CC
Confidence 467889999999999999999999876543 33368899999999999999999999999999842 45
Q ss_pred hHHHHHHHHHhHHHHHHHcCCH-HHHHHHHHHHHhhC
Q 017532 251 EVEFRNLVSRNKALIYLVGKDY-VSAVREYEECIERD 286 (370)
Q Consensus 251 ~p~~~~~~~~~~g~~~~~~g~~-~eA~~~~~~~l~~~ 286 (370)
.|+..+... +-.++.+.|+. ++|.+.|+++.+..
T Consensus 197 ~PDvvTYnt--LI~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 197 TPDLLSYAA--ALQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp CCCHHHHHH--HHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHH--HHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 566534443 44455688884 78999999999875
No 234
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.92 E-value=0.034 Score=45.15 Aligned_cols=102 Identities=13% Similarity=0.119 Sum_probs=73.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhH
Q 017532 183 YHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNK 262 (370)
Q Consensus 183 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~ 262 (370)
..++.|+++.|.++.+.+ ++...|..||...+..|+++-|+.+|+++-. - -.+
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------------~-------~~L 66 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS--------------F-------DKL 66 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------------H-------HHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------------H-------HHH
Confidence 345679999999998877 6788999999999999999999999998851 1 114
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 017532 263 ALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENA 316 (370)
Q Consensus 263 g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~a 316 (370)
.++|...|+.+.=.+.-+.+.. ..++ +..-.+++.+|+++++++.|.+.
T Consensus 67 ~~Ly~~tg~~e~L~kla~iA~~-~g~~----n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 67 SFLYLVTGDVNKLSKMQNIAQT-REDF----GSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH-TTCH----HHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHHHHH-CccH----HHHHHHHHHcCCHHHHHHHHHHC
Confidence 5667777776554333333322 2221 22345678899999999998664
No 235
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.75 E-value=0.019 Score=44.08 Aligned_cols=80 Identities=11% Similarity=-0.029 Sum_probs=62.6
Q ss_pred CCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHH
Q 017532 207 LDPILVSKLGFIQMQVGDL---EGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECI 283 (370)
Q Consensus 207 ~~~~~~~~lg~~~~~~g~~---~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l 283 (370)
..+.+.+..|+++.+..+. .+++..++...+- +|..+.+.++.+|..+++.|+|++|..+.+.++
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~------------~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE------------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH------------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc------------CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 5678888999999888765 4677777777642 232236678889999999999999999999999
Q ss_pred hhCCCCHHHHHHHHH
Q 017532 284 ERDYNDIVAINNKAL 298 (370)
Q Consensus 284 ~~~p~~~~~~~nla~ 298 (370)
+..|+|..+..-...
T Consensus 106 ~~eP~N~QA~~Lk~~ 120 (134)
T 3o48_A 106 EHERNNKQVGALKSM 120 (134)
T ss_dssp TTCTTCHHHHHHHHH
T ss_pred hhCCCCHHHHHHHHH
Confidence 999999887655443
No 236
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.60 E-value=0.012 Score=55.31 Aligned_cols=104 Identities=13% Similarity=0.096 Sum_probs=85.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 176 VLNCLIGYHLSSKEYNVCFDLMNESIGRGN--GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 176 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
++..+|..|++.|+++.|...|.++..... ......+..+.++++..||+..+..++.++..+... ..+++
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~-------~~d~~ 205 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEK-------GGDWE 205 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT-------CCCTH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhc-------CCCHH
Confidence 456789999999999999999999976543 234567788889999999999999999999877655 23455
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIERD 286 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~ 286 (370)
.+.......|..++..++|.+|...|-.++...
T Consensus 206 ~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 206 RRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 545666778999999999999999999987654
No 237
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.51 E-value=0.047 Score=51.58 Aligned_cols=106 Identities=10% Similarity=0.037 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCc
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGN-GLD----PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGL 248 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-~~~----~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~ 248 (370)
+++...|+.++...|++.+|..+++.+..... ..+ ...+....++++..+|+.+|...+.++.......
T Consensus 137 arl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~------ 210 (445)
T 4b4t_P 137 ARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKN------ 210 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhccc------
Confidence 35566889999999999999999999864322 112 3566788999999999999999999985432221
Q ss_pred cchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh
Q 017532 249 LSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIER 285 (370)
Q Consensus 249 ~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~ 285 (370)
...|..+...+...|..+...++|.+|..+|..+...
T Consensus 211 ~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 211 PKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4567777888888999999999999999999999765
No 238
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.39 E-value=0.13 Score=39.92 Aligned_cols=79 Identities=13% Similarity=-0.024 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHH
Q 017532 207 LDPILVSKLGFIQMQVGDLE---GAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECI 283 (370)
Q Consensus 207 ~~~~~~~~lg~~~~~~g~~~---~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l 283 (370)
....+.++.|+++.+..+.+ +++..++...+.. +.. +.+..+.+|..+++.|+|++|..+.+.++
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~---------~~~---~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL 104 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA---------ESR---RRECLYYLTIGCYKLGEYSMAKRYVDTLF 104 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC---------CST---HHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC---------ccc---hhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 67788899999999887654 6777777776421 111 25667889999999999999999999999
Q ss_pred hhCCCCHHHHHHHH
Q 017532 284 ERDYNDIVAINNKA 297 (370)
Q Consensus 284 ~~~p~~~~~~~nla 297 (370)
+.+|+|..+.....
T Consensus 105 ~~eP~n~QA~~Lk~ 118 (144)
T 1y8m_A 105 EHERNNKQVGALKS 118 (144)
T ss_dssp HTCCCCHHHHHHHH
T ss_pred hcCCCcHHHHHHHH
Confidence 99999987765443
No 239
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.33 E-value=0.046 Score=42.88 Aligned_cols=111 Identities=14% Similarity=0.094 Sum_probs=79.9
Q ss_pred HHHHHHHhcCCH------HHHHHHHHHHHhCCCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCc
Q 017532 179 CLIGYHLSSKEY------NVCFDLMNESIGRGNGLD--------PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKF 244 (370)
Q Consensus 179 ~la~~~~~~g~~------~~A~~~~~~~l~~~~~~~--------~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~ 244 (370)
.....+-..|+. +.-+..|++++..-| .. ..+|..-+ .+...+|.++|.+.|+.++++.+.
T Consensus 18 ~yl~llE~~g~p~~d~~l~rlrd~YerAia~~P-p~k~~~wrrYI~LWIrYA-~~~ei~D~d~aR~vy~~a~~~hKk--- 92 (161)
T 4h7y_A 18 SLLLKLEKNSVPLSDALLNKLIGRYSQAIEALP-PDKYGQNESFARIQVRFA-ELKAIQEPDDARDYFQMARANCKK--- 92 (161)
T ss_dssp HHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSC-GGGGTTCHHHHHHHHHHH-HHHHHHCGGGCHHHHHHHHHHCTT---
T ss_pred HHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCC-ccccccHHHHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHHhHH---
Confidence 334445555887 788899999988776 21 23333334 335669999999999999986222
Q ss_pred cCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q 017532 245 EDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRD 305 (370)
Q Consensus 245 ~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~ 305 (370)
+ +.+|+..|.--.++|+...|.+.+.+++...|.....+. .|+.-++.|+
T Consensus 93 ---------F-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le-~a~~nl~~~~ 142 (161)
T 4h7y_A 93 ---------F-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLE-IALRNLNLQK 142 (161)
T ss_dssp ---------B-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHH-HHHHHHHTTC
T ss_pred ---------H-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHH-HHHHhhhcCC
Confidence 2 667888999999999999999999999999998765543 3444455544
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.10 E-value=0.079 Score=53.12 Aligned_cols=128 Identities=12% Similarity=0.086 Sum_probs=86.6
Q ss_pred hcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--HcC-CHHHHHHHHHHHHHHh----hcCC-ccCCc-cchHHHH
Q 017532 186 SSKE-YNVCFDLMNESIGRGNGLDPILVSKLGFIQM--QVG-DLEGAKKSFNRVEEML----NEGK-FEDGL-LSEVEFR 255 (370)
Q Consensus 186 ~~g~-~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~--~~g-~~~~A~~~~~~a~~l~----~~~~-~~~~~-~~~p~~~ 255 (370)
..++ ++.|+.+++++...+| .... ++..+.+.. +.+ +--+|++...++++-. .+.. .+... ...|..
T Consensus 260 ~t~~~~~~a~~~le~L~~~~p-~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~- 336 (754)
T 4gns_B 260 ITPSLVDFTIDYLKGLTKKDP-IHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCM- 336 (754)
T ss_dssp TCGGGHHHHHHHHHHHHHHCG-GGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHH-
T ss_pred ccccHHHHHHHHHHHHHhhCC-chhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcc-
Confidence 3455 6889999999999888 4433 222233222 222 3346777777665321 1100 00000 001111
Q ss_pred HHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 017532 256 NLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENA 316 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~a 316 (370)
...+...+.-++.+|+|+-|+++-++++..-|.+...|+.|+.||..+|+++.|+-.+..+
T Consensus 337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 337 SDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3445556777888999999999999999999999999999999999999999999888876
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.05 E-value=0.15 Score=47.25 Aligned_cols=106 Identities=8% Similarity=-0.035 Sum_probs=77.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHH
Q 017532 186 SSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEG-AKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKAL 264 (370)
Q Consensus 186 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~-A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~ 264 (370)
..|+.+.|...+++++.... ...- -.. ..+.+-. ....+++.. ..+...++.
T Consensus 127 ~~~~~~~a~~~l~~Al~L~r-G~~L--~~~-----~~~~w~~~~r~~l~~~~-------------------~~a~~~~~~ 179 (388)
T 2ff4_A 127 AAGRFEQASRHLSAALREWR-GPVL--DDL-----RDFQFVEPFATALVEDK-------------------VLAHTAKAE 179 (388)
T ss_dssp HTTCHHHHHHHHHHHHTTCC-SSTT--GGG-----TTSTTHHHHHHHHHHHH-------------------HHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHhcC-CCCC--CCC-----CchhHHHHHHHHHHHHH-------------------HHHHHHHHH
Confidence 35889999999999998876 3210 000 0112211 122222222 233444677
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 017532 265 IYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALE 318 (370)
Q Consensus 265 ~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~ 318 (370)
.+...|++.+|+..+++++..+|-+..++..+..++...|+..+|++.|++.-+
T Consensus 180 ~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 180 AEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999999999999999988754
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.94 E-value=0.11 Score=52.06 Aligned_cols=61 Identities=16% Similarity=0.110 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRV 235 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 235 (370)
..++..-+..++.+|+|+-|+.+.++++...| .+...|+.|+.+|..+||++.|+-.++.+
T Consensus 337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aP-seF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 337 SDLLNIQTNFLLNRGDYELALGVSNTSTELAL-DSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCc-hhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34666778889999999999999999999999 99999999999999999999999887764
No 243
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=95.92 E-value=0.041 Score=52.55 Aligned_cols=81 Identities=12% Similarity=-0.081 Sum_probs=71.8
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 017532 257 LVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSM 336 (370)
Q Consensus 257 ~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~l 336 (370)
.....+|.+....+.++.|..+|.+++.+.|.+...++.+|++....|+.-+|+-+|-+++.....+ ....-||..+
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf---~~a~~nL~~~ 229 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPF---PAASTNLQKA 229 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCC---HHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCC---hhHHHHHHHH
Confidence 3556799999999999999999999999999999999999999999999999999999998775545 7778888888
Q ss_pred HHhc
Q 017532 337 YELA 340 (370)
Q Consensus 337 yel~ 340 (370)
++..
T Consensus 230 f~~~ 233 (497)
T 1ya0_A 230 LSKA 233 (497)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8753
No 244
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.78 E-value=0.075 Score=53.69 Aligned_cols=48 Identities=17% Similarity=0.192 Sum_probs=40.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017532 183 YHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVE 236 (370)
Q Consensus 183 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~ 236 (370)
..+..|++++|.++.+.+ ++...|..+|..+++.|+++.|+.+|.++-
T Consensus 661 ~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 345679999999886543 678899999999999999999999999864
No 245
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.74 E-value=1.3 Score=43.43 Aligned_cols=124 Identities=6% Similarity=-0.135 Sum_probs=81.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHH
Q 017532 181 IGYHLSSKEYNVCFDLMNESIGRGNGLDPIL---VSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNL 257 (370)
Q Consensus 181 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~---~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~ 257 (370)
+...+..++.+.|...+.............. ...++.-....+...++...+.++.. . ..+... .+
T Consensus 221 ~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~-------~~~~~~-~e 289 (618)
T 1qsa_A 221 AFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---R-------SQSTSL-IE 289 (618)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---T-------CCCHHH-HH
T ss_pred HHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---c-------CCChHH-HH
Confidence 3344455688999999988865444122222 23344444445535677778877552 1 122222 22
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 017532 258 VSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALE 318 (370)
Q Consensus 258 ~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~ 318 (370)
+ ..+. .+..|+++.|..+|+++-..........+-+|.++...|+.++|...|+++..
T Consensus 290 -~-~~r~-Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 290 -R-RVRM-ALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp -H-HHHH-HHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred -H-HHHH-HHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 2 1233 45679999999999887654456788899999999999999999999998875
No 246
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.62 E-value=0.29 Score=42.30 Aligned_cols=119 Identities=15% Similarity=0.076 Sum_probs=86.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhH
Q 017532 183 YHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNK 262 (370)
Q Consensus 183 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~ 262 (370)
.+++.|+.++|+..+...++..| .+......+..+++-.|+++.|.+.++.+.++.+.. .|. +..+ +
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P-~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~--------~~~--a~~y--r 72 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASP-KDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY--------LPG--ASQL--R 72 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG--------HHH--HHHH--H
T ss_pred HHHhCCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh--------hHH--HHHH--H
Confidence 46778999999999999999999 999999999999999999999999999999775541 111 1111 1
Q ss_pred HHHHHHcCCHHHHHHHHHHHH-hh--------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 263 ALIYLVGKDYVSAVREYEECI-ER--------DYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 263 g~~~~~~g~~~eA~~~~~~~l-~~--------~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
..+ .| +.++..+ +- .|.........+......|+.++|.+.-+++++..|..
T Consensus 73 ~lI--------~a-E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 73 HLV--------KA-AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp HHH--------HH-HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred HHH--------HH-HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 111 11 1122222 11 23334555566777788999999999999999998764
No 247
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=95.55 E-value=0.35 Score=44.67 Aligned_cols=102 Identities=11% Similarity=-0.010 Sum_probs=81.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC---CCC
Q 017532 213 SKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERD---YND 289 (370)
Q Consensus 213 ~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~---p~~ 289 (370)
..+|.+|+..|++.+|.+.+.+..+-+... .++....+++.....+|...|++.++...|.++.... +.+
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~-------dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~ 175 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKL-------DDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCP 175 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTS-------SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhcc-------ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCC
Confidence 478999999999999999999999876652 2334447888889999999999999999999986552 233
Q ss_pred H----HHHHHHHHHHH-HhCCHHHHHHHHHHHHHhCC
Q 017532 290 I----VAINNKALCLM-YLRDLSDSIKVLENALERVP 321 (370)
Q Consensus 290 ~----~~~~nla~~~~-~~g~~~~A~~~l~~al~~~p 321 (370)
| .....-|..++ ..++|.+|-..|-++.+...
T Consensus 176 p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~ 212 (394)
T 3txn_A 176 PKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFD 212 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence 4 23445678888 89999999999999976543
No 248
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.17 E-value=0.52 Score=47.45 Aligned_cols=103 Identities=16% Similarity=0.224 Sum_probs=59.8
Q ss_pred hHhHHHHHHcCChHHHHH-HHHHhhhccccCCc-hHHHHHHHHHHHHHhhhcCHHHHHHHhhhcCCCCCCCCcccccCCC
Q 017532 32 LASLQDLATRGSWRTIID-NVSRARSQSLLTQP-HHHLTYLAYNTLALMKLRRFDEAQQELDSLEDFNSSGYQYETYPHI 109 (370)
Q Consensus 32 ~~~l~~l~~~g~~~~Ai~-~~~~~~~~~~~~~P-~~~~~~~~~~~~al~~l~~~~~A~~~~~~~~~l~~~~~~~~~~~~~ 109 (370)
.-.....+..|+|++|.+ .+.. -| .+.. ..-+..+.+.|..++|....+..
T Consensus 603 ~~~~~~~~~~~~~~~a~~~~l~~--------i~~~~~~---~~~~~~l~~~~~~~~a~~~~~~~---------------- 655 (814)
T 3mkq_A 603 VLEFQTLTLRGEIEEAIENVLPN--------VEGKDSL---TKIARFLEGQEYYEEALNISPDQ---------------- 655 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHTGGG--------CCCHHHH---HHHHHHHHHTTCHHHHHHHCCCH----------------
T ss_pred HHHHhHHHHhCCHHHHHHHHHhc--------CCchHHH---HHHHHHHHhCCChHHheecCCCc----------------
Confidence 345677788999999886 3322 12 2212 21234577888888888644211
Q ss_pred CCCCCCcccchhHHHHHHHcCcccCCccchHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 017532 110 YPNRTGSMVPFSLRWLYAVLPIKLSNRQVGLDRFYELLDFVREKLARKLAEKLEESVKSWKKREIFVLNCLIGYHLSSKE 189 (370)
Q Consensus 110 ~~~~~~~~~~~~~r~l~a~~~~~~g~~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 189 (370)
...|. +....|+.++|++....+ +....|+ .+|..+++.++
T Consensus 656 -------~~~f~-------~~l~~~~~~~A~~~~~~~-----------------~~~~~W~--------~la~~al~~~~ 696 (814)
T 3mkq_A 656 -------DQKFE-------LALKVGQLTLARDLLTDE-----------------SAEMKWR--------ALGDASLQRFN 696 (814)
T ss_dssp -------HHHHH-------HHHHHTCHHHHHHHHTTC-----------------CCHHHHH--------HHHHHHHHTTC
T ss_pred -------chhee-------hhhhcCCHHHHHHHHHhh-----------------CcHhHHH--------HHHHHHHHcCC
Confidence 01111 113446666665532111 1123443 68888888999
Q ss_pred HHHHHHHHHHH
Q 017532 190 YNVCFDLMNES 200 (370)
Q Consensus 190 ~~~A~~~~~~~ 200 (370)
++.|+..|.++
T Consensus 697 ~~~A~~~y~~~ 707 (814)
T 3mkq_A 697 FKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 99999999987
No 249
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=95.16 E-value=0.75 Score=36.80 Aligned_cols=116 Identities=14% Similarity=0.092 Sum_probs=82.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHH
Q 017532 186 SSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALI 265 (370)
Q Consensus 186 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~ 265 (370)
+-.+|+.++-+-.-+.. ..++....++.++...|++..|.-++...- . .-+......|
T Consensus 14 kY~dYdt~~fLsa~L~~----~~~eY~lL~~I~LyyngEY~R~Lf~L~~lN------------T------~Ts~YYk~LC 71 (242)
T 3kae_A 14 RYRDYETAIFLAACLLP----CKPEYRMLMSIVLYLNGEYTRALFHLHKLN------------T------CTSKYYESLC 71 (242)
T ss_dssp HTTCHHHHHHHHHHHC--------CTHHHHHHHHHHTTCHHHHHHHHHTCC------------B------HHHHHHHHHH
T ss_pred hcccccHHHHHHHHHcc----CChHHHhhhhhhhhhcchHhHHHHHHHhcc------------h------HHHHHHHHHH
Confidence 44778877655443333 223445666778888999988877664332 1 3344568999
Q ss_pred HHHcCCHHHHHHHHHHHHhh-----------------CCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 266 YLVGKDYVSAVREYEECIER-----------------DYNDIV-AINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 266 ~~~~g~~~eA~~~~~~~l~~-----------------~p~~~~-~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
+.+.++|..|+..++..++- +|.|.. .++.+|..+-.+|.-+||+.++.......|-+
T Consensus 72 y~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf 147 (242)
T 3kae_A 72 YKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLF 147 (242)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCcccc
Confidence 99999999999999999943 234444 45567888899999999999999998888754
No 250
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=94.79 E-value=0.2 Score=47.77 Aligned_cols=79 Identities=14% Similarity=0.095 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 017532 211 LVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDI 290 (370)
Q Consensus 211 ~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~ 290 (370)
.+..||.+....+.++.|..+|.+|..+.|+. +..++.+|.+....|+.-+|+-+|.+++......+
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~-------------G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~ 220 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSN-------------GQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFP 220 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTB-------------SHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCC-------------CchHHHHHHHHhcccccHHHHHHHHHHHhcCCCCh
Confidence 45678999999999999999999999776653 55677899999999999999999999998776677
Q ss_pred HHHHHHHHHHHH
Q 017532 291 VAINNKALCLMY 302 (370)
Q Consensus 291 ~~~~nla~~~~~ 302 (370)
.+..|+...+.+
T Consensus 221 ~a~~nL~~~f~~ 232 (497)
T 1ya0_A 221 AASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 777777666543
No 251
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.70 E-value=0.22 Score=45.98 Aligned_cols=68 Identities=9% Similarity=0.025 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 017532 171 KREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEML 239 (370)
Q Consensus 171 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~ 239 (370)
+....+...++..+...|++.+|+..+..++..+| .+..++..+..++...|+..+|+..|++..+..
T Consensus 168 ~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L 235 (388)
T 2ff4_A 168 EDKVLAHTAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTL 235 (388)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 33356667888899999999999999999999999 999999999999999999999999999987643
No 252
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=94.60 E-value=0.14 Score=44.29 Aligned_cols=59 Identities=15% Similarity=0.045 Sum_probs=56.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 265 IYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 265 ~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
.+++.|+.++|++.....++.+|.|......+...+|-.|+++.|.+.++.+.+++|+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 45688999999999999999999999999999999999999999999999999999986
No 253
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.92 E-value=1.6 Score=40.96 Aligned_cols=103 Identities=11% Similarity=0.050 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHh---hC
Q 017532 210 ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIE---RD 286 (370)
Q Consensus 210 ~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~---~~ 286 (370)
.+...|+.++...|++.+|...++....=... ..+...+.+.+.....+++..+++..|...++++.. ..
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~-------~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~ 210 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYG-------SMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKN 210 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCS-------SSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh-------cccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhccc
Confidence 45578999999999999999999998643222 123333477888899999999999999999999742 23
Q ss_pred CCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 287 YNDI----VAINNKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 287 p~~~----~~~~nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
+.++ ..+...|..+...++|.+|-.+|..+...
T Consensus 211 ~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 211 PKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3333 45667888999999999999999988764
No 254
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.56 E-value=0.51 Score=44.19 Aligned_cols=104 Identities=15% Similarity=0.109 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh--C
Q 017532 209 PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIER--D 286 (370)
Q Consensus 209 ~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~--~ 286 (370)
..++..+|..|...||+++|.+.|.++...+.... . +...+...-.+++..+++..+...++++-.. .
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~-------~---kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~ 200 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTG-------A---KIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEK 200 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCC-------S---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChH-------H---HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhc
Confidence 34678899999999999999999999987665431 1 1556777778888999999999999998654 2
Q ss_pred CCCHH----HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 017532 287 YNDIV----AINNKALCLMYLRDLSDSIKVLENALERVPT 322 (370)
Q Consensus 287 p~~~~----~~~nla~~~~~~g~~~~A~~~l~~al~~~p~ 322 (370)
..++. .....|..+...++|.+|-..|-.++.-...
T Consensus 201 ~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~ 240 (429)
T 4b4t_R 201 GGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTS 240 (429)
T ss_dssp CCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCCc
Confidence 22332 3344577788899999999999988766443
No 255
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.14 E-value=1.1 Score=42.53 Aligned_cols=137 Identities=14% Similarity=0.081 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCcc
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRGN-GLD---PILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLL 249 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~ 249 (370)
+.+++.+...|+..+.|++|..+..+..-... ..+ ...++.+|+++.-.++|.+|.+++..|++.++.. .
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~------~ 304 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN------S 304 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS------S
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc------h
Confidence 46777888899999999999999999853211 011 2345788999999999999999999999776653 1
Q ss_pred chHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhCCH---HHHHHHHHHHHHhCCCc
Q 017532 250 SEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYND---IVAINNKALCLMYLRDL---SDSIKVLENALERVPTV 323 (370)
Q Consensus 250 ~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~---~~~~~nla~~~~~~g~~---~~A~~~l~~al~~~p~~ 323 (370)
....++..++..+-.+-+-+|+..+ ...|+ .|.. ...|..++.++ +.|++ +.+++..+.....+...
T Consensus 305 ~a~gfr~~a~K~lI~V~LLlG~iP~-r~lf~-----q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~h~~~F~~Dgty 377 (523)
T 4b4t_S 305 KSLGFLQQSNKLHCCIQLLMGDIPE-LSFFH-----QSNMQKSLLPYYHLTKAV-KLGDLKKFTSTITKYKQLLLKDDTY 377 (523)
T ss_dssp SCSHHHHHHHHHHHHHHHHHTCCCC-HHHHT-----TTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHHTHHHHHHTTCT
T ss_pred hhhhHHHHHHHHHHhHHhhcCCCCC-hHHhh-----chhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHhcceeccCChh
Confidence 1222223444344445455688765 22222 2332 23456666554 55664 44555555566666554
No 256
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.36 E-value=3.2 Score=44.00 Aligned_cols=130 Identities=17% Similarity=0.131 Sum_probs=86.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHH-----
Q 017532 180 LIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEF----- 254 (370)
Q Consensus 180 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~----- 254 (370)
+...+...+.++.|..+. ..-+ .++...+.+|++++..|++++|..+|+++..-...... ........
T Consensus 818 l~~~l~~~~~~~~~~~l~----~~~~-~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~--l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLI----GWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTS--QFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHH----HHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCC--SCSSHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHh----hhcc-CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccch--hhhhhcccccccc
Confidence 444555667666654432 3334 56667799999999999999999999997421111000 00000000
Q ss_pred -------HHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC-CCCH----HHHHHHHHHHHHhCCHHHHHHHHHHH
Q 017532 255 -------RNLVSRNKALIYLVGKDYVSAVREYEECIERD-YNDI----VAINNKALCLMYLRDLSDSIKVLENA 316 (370)
Q Consensus 255 -------~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~-p~~~----~~~~nla~~~~~~g~~~~A~~~l~~a 316 (370)
...-+.....++...|.++.+++.-+.+++.. +++. ..|.++=..++..|+|++|-..+-..
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 01234556677788899999999999999865 3443 25777888899999999998888654
No 257
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.19 E-value=7.7 Score=41.07 Aligned_cols=124 Identities=7% Similarity=-0.128 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-C---------------------CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGRG-N---------------------GLDPILVSKLGFIQMQVGDLEGAKKS 231 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~---------------------~~~~~~~~~lg~~~~~~g~~~~A~~~ 231 (370)
....+.+|.+++..|++++|..+|+++-..- . ..-+..+..+..++.+.|-++.+++.
T Consensus 842 ~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~f 921 (1139)
T 4fhn_B 842 PIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEF 921 (1139)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3345889999999999999999998873211 1 01123456778899999999999999
Q ss_pred HHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCH
Q 017532 232 FNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDL 306 (370)
Q Consensus 232 ~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~ 306 (370)
-+.|++.... .+++.....|.++=..+...|+|++|...+...-.. ..-...+..+...++..|+.
T Consensus 922 a~lAi~~~~~--------~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-~~r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 922 SLLADASKET--------DDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-PLKKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp HHHHHHHCCS--------CCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-SSCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHhccC--------CChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHhCCCh
Confidence 9999975432 344444566777777888999999998777554221 12234455555555555553
No 258
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.91 E-value=1.2 Score=42.48 Aligned_cols=133 Identities=10% Similarity=-0.043 Sum_probs=59.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHh---CCC-------CCCHHHHHHHHHHHHHcCCHHHHHHH----------HHHHHHHhhc
Q 017532 182 GYHLSSKEYNVCFDLMNESIG---RGN-------GLDPILVSKLGFIQMQVGDLEGAKKS----------FNRVEEMLNE 241 (370)
Q Consensus 182 ~~~~~~g~~~~A~~~~~~~l~---~~~-------~~~~~~~~~lg~~~~~~g~~~~A~~~----------~~~a~~l~~~ 241 (370)
..++..++|++|..+...++. ... .-....|+..++++...|+....... +-.+.+...-
T Consensus 144 i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~l 223 (523)
T 4b4t_S 144 LFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASL 223 (523)
T ss_dssp -----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCS
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhc
Confidence 345678899999888776652 111 02345566677777778877654322 2222221111
Q ss_pred CCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHhCCHHHHHHHHH
Q 017532 242 GKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYND-------IVAINNKALCLMYLRDLSDSIKVLE 314 (370)
Q Consensus 242 ~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~-------~~~~~nla~~~~~~g~~~~A~~~l~ 314 (370)
..+.+.++..+..+=..|...+.|+.|.....++. .|.. ...++.+|.++...++|.+|.+.+.
T Consensus 224 -------r~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~ 294 (523)
T 4b4t_S 224 -------KHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYII 294 (523)
T ss_dssp -------CSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -------ccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 12333336667777888899999999999999884 3322 3456778999999999999999999
Q ss_pred HHHHhCCCc
Q 017532 315 NALERVPTV 323 (370)
Q Consensus 315 ~al~~~p~~ 323 (370)
.|+...|..
T Consensus 295 ~A~rkap~~ 303 (523)
T 4b4t_S 295 AAIRKAPHN 303 (523)
T ss_dssp HHTSSCSCS
T ss_pred HHHHhCCcc
Confidence 999988764
No 259
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=89.41 E-value=3.9 Score=32.91 Aligned_cols=55 Identities=15% Similarity=0.186 Sum_probs=43.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHH
Q 017532 207 LDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEEC 282 (370)
Q Consensus 207 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~ 282 (370)
.|+...+. +.++.|+++.|.+..++.. + ...|..+|...+..|+++-|..+|+++
T Consensus 6 ~D~~~rF~---LAL~lg~l~~A~e~a~~l~--------------~----~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 6 QDPHIRFD---LALEYGNLDAALDEAKKLN--------------D----SITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp SCHHHHHH---HHHHTTCHHHHHHHHHHHC--------------C----HHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred CChHHHHH---HHHhcCCHHHHHHHHHHhC--------------C----HHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 45555555 4568999999998876542 1 345888999999999999999999987
No 260
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=88.65 E-value=21 Score=36.77 Aligned_cols=158 Identities=11% Similarity=0.101 Sum_probs=78.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHH
Q 017532 182 GYHLSSKEYNVCFDLMNESIGRGNGLDPIL----VSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNL 257 (370)
Q Consensus 182 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~----~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~ 257 (370)
..++..|+.+.+-.+.+.+.... ++.. ...+|..|.-.|+...-...+..+.. ..+.+.+..
T Consensus 532 LGll~~g~~e~~~~li~~L~~~~---dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~-----------d~~d~VRra 597 (963)
T 4ady_A 532 LALINYGRQELADDLITKMLASD---ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS-----------DSNDDVRRA 597 (963)
T ss_dssp HHHHTTTCGGGGHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-----------CSCHHHHHH
T ss_pred HHhhhCCChHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc-----------CCcHHHHHH
Confidence 33444566666665555554422 2222 23456666677774333334544442 122334445
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH--HHhCCH-HHHHHHHHHHHHhCCCcchhHHHHHHHH
Q 017532 258 VSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCL--MYLRDL-SDSIKVLENALERVPTVALNETLVVNLC 334 (370)
Q Consensus 258 ~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~--~~~g~~-~~A~~~l~~al~~~p~~~~~~~~~~nl~ 334 (370)
+...+|.+ ..|+.+.+...++.... -.++.+.+..+.++ ...|.. .+++..+.++. .+++..+...+++-|+
T Consensus 598 AViaLGlI--~~g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~-~D~d~~Vrq~Ai~ALG 672 (963)
T 4ady_A 598 AVIALGFV--LLRDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT-KDPVDFVRQAAMIALS 672 (963)
T ss_dssp HHHHHHHH--TSSSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH-TCSSHHHHHHHHHHHH
T ss_pred HHHHHHhh--ccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc-cCCCHHHHHHHHHHHH
Confidence 55555555 44444333333332222 23455555444333 233333 67888887775 4777666677777887
Q ss_pred HHHHhccCCchhhHHHHHHHHhhh
Q 017532 335 SMYELAYVNHSDIKRTLSSWIGRV 358 (370)
Q Consensus 335 ~lyel~~~~~~~~~~~ll~~~~~~ 358 (370)
.+-.-..+....+-..+++.+..+
T Consensus 673 ~Ig~gtnna~~~rva~~l~~L~~~ 696 (963)
T 4ady_A 673 MILIQQTEKLNPQVADINKNFLSV 696 (963)
T ss_dssp HHSTTCCTTTCTTHHHHHHHHHHH
T ss_pred HHhcCCccccchHHHHHHHHHHHH
Confidence 774311111111456666766654
No 261
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.10 E-value=9.9 Score=34.87 Aligned_cols=98 Identities=11% Similarity=0.096 Sum_probs=70.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCC----------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCcc
Q 017532 182 GYHLSSKEYNVCFDLMNESIGRGN----------------GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFE 245 (370)
Q Consensus 182 ~~~~~~g~~~~A~~~~~~~l~~~~----------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~ 245 (370)
.+.....+.++|+..++++...-. .........+++.|+..|+.++|..+++++.......
T Consensus 84 ~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~--- 160 (393)
T 4b4t_O 84 ASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKK--- 160 (393)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHS---
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcc---
Confidence 345567899999999988743210 0112344778999999999999999999998765542
Q ss_pred CCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHh
Q 017532 246 DGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIE 284 (370)
Q Consensus 246 ~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~ 284 (370)
...+|......+...+..+...++|.++...+-..+.
T Consensus 161 --~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 161 --DSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp --CCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --CCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 1345555566777788888899999988777666654
No 262
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=83.95 E-value=33 Score=33.45 Aligned_cols=133 Identities=7% Similarity=-0.086 Sum_probs=88.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----------hhcCCcc---
Q 017532 180 LIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEM-----------LNEGKFE--- 245 (370)
Q Consensus 180 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l-----------~~~~~~~--- 245 (370)
++...++.|+++.|...++.+-.... ......+.+|+.+...|+.++|...|+++..- .......
T Consensus 291 ~~r~Alr~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~ 369 (618)
T 1qsa_A 291 RVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKID 369 (618)
T ss_dssp HHHHHHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCC
T ss_pred HHHHHHHCCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCC
Confidence 33345567999999999988755444 56778899999999999999999999986521 0000000
Q ss_pred CC-ccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 017532 246 DG-LLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLEN 315 (370)
Q Consensus 246 ~~-~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~ 315 (370)
.. ......+.....+..+..++..|...+|...+..++... +..-...++......|.++.++....+
T Consensus 370 ~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~--~~~~~~~la~~a~~~~~~~~~v~~~~~ 438 (618)
T 1qsa_A 370 KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIA 438 (618)
T ss_dssp CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 00 000001111123446778889999999999998887642 234444667777888888888766543
No 263
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=83.87 E-value=21 Score=36.73 Aligned_cols=162 Identities=10% Similarity=-0.041 Sum_probs=84.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CC---CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccC
Q 017532 176 VLNCLIGYHLSSKEYNVCFDLMNESIGRGN--GL---DP----ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFED 246 (370)
Q Consensus 176 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~--~~---~~----~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~ 246 (370)
+++.+|.++. |..++++.++...+.... .. +. -+...||.++.-.|+ +++.+.+..++. +
T Consensus 415 AllaLGli~a--g~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~---d----- 483 (963)
T 4ady_A 415 SLYGLGLIYA--GFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLY---N----- 483 (963)
T ss_dssp HHHHHHHHTT--TTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHH---T-----
T ss_pred HHHHHHHhcC--CCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHh---c-----
Confidence 3344444444 333467777776664321 00 11 223456666665565 456666666653 1
Q ss_pred CccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCcchh
Q 017532 247 GLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVPTVALN 326 (370)
Q Consensus 247 ~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p~~~~~ 326 (370)
.++.....+.+.+|.++.-.|+-+-....+..+.+...++..-..-+|..+...|+.+.+-..++.+.. +.++...
T Consensus 484 ---d~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~-~~dp~vR 559 (963)
T 4ady_A 484 ---DSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLA-SDESLLR 559 (963)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHH-CSCHHHH
T ss_pred ---CCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHh-CCCHHHH
Confidence 122222355667888888888866555555555554433333334556666678888776666655443 4444344
Q ss_pred HHHHHHHHHHHHhccCCchhhHHHHHHH
Q 017532 327 ETLVVNLCSMYELAYVNHSDIKRTLSSW 354 (370)
Q Consensus 327 ~~~~~nl~~lyel~~~~~~~~~~~ll~~ 354 (370)
....+-++..|- ..+...+-..+|+.
T Consensus 560 ygaa~alglAya--GTGn~~aIq~LL~~ 585 (963)
T 4ady_A 560 YGGAFTIALAYA--GTGNNSAVKRLLHV 585 (963)
T ss_dssp HHHHHHHHHHTT--TSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CCCCHHHHHHHHHH
Confidence 444444544442 33444444445543
No 264
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=79.50 E-value=36 Score=35.16 Aligned_cols=52 Identities=29% Similarity=0.413 Sum_probs=40.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017532 180 LIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVE 236 (370)
Q Consensus 180 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~ 236 (370)
++..+...|.++-|. +.+.--| .++..-+.+|++++..|++++|..+|++|-
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~-~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHHH----HHHhhcC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 445566677776543 3555556 677777999999999999999999999975
No 265
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=77.66 E-value=40 Score=31.49 Aligned_cols=137 Identities=11% Similarity=-0.028 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--------C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-hhcCCc
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGN--------G-LDPILVSKLGFIQMQVGDLEGAKKSFNRVEEM-LNEGKF 244 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~--------~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l-~~~~~~ 244 (370)
.+.+.+-.+|.+.++...+..+++.+-.... . ..+...|.+|++++..+++.+|.+++..|.+. ++....
T Consensus 177 ~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~ 256 (455)
T 3t5v_B 177 YLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLT 256 (455)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcccc
Confidence 3445677899999999999999876643321 0 11244588999999999999999999999998 876310
Q ss_pred cCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHH-HHHHHHHHHHhCCH---HHHHHHHHHHHH
Q 017532 245 EDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYND--IVA-INNKALCLMYLRDL---SDSIKVLENALE 318 (370)
Q Consensus 245 ~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~--~~~-~~nla~~~~~~g~~---~~A~~~l~~al~ 318 (370)
......++..++..+--+.+-.|++.+-. .+++ |.+ ... |..+. -..+.|++ +++++..+.-+.
T Consensus 257 ---~~~~~~n~~~ILkyLIpv~LLlG~~P~~~-ll~k-----~~~~~L~~~y~~L~-~AVr~Gdl~~F~~~L~~~~~~f~ 326 (455)
T 3t5v_B 257 ---NQAITRNGTRILNYMIPTGLILGKMVKWG-PLRP-----FLSQETIDNWSVLY-KHVRYGNIQGVSLWLRQNERHLC 326 (455)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHTTCCBCHH-HHGG-----GSCHHHHHHHHHHH-HHHHHTCHHHHHHHHHHTHHHHH
T ss_pred ---chhhhhHHHHHHHHHHHHHHHcCCCCCHH-HHcc-----cchHHHHHHHHHHH-HHHHhCCHHHHHHHHHHhHHHHH
Confidence 00011222445555555666678775532 2322 222 222 44443 35567765 444444444444
Q ss_pred hCC
Q 017532 319 RVP 321 (370)
Q Consensus 319 ~~p 321 (370)
.+.
T Consensus 327 ~~g 329 (455)
T 3t5v_B 327 ARQ 329 (455)
T ss_dssp HTT
T ss_pred HcC
Confidence 443
No 266
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=75.84 E-value=7.9 Score=26.06 Aligned_cols=32 Identities=16% Similarity=0.021 Sum_probs=23.8
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 017532 261 NKALIYLVGKDYVSAVREYEECIERDYNDIVA 292 (370)
Q Consensus 261 ~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~ 292 (370)
.+|..++..|++++|+.+|-+++...|+-...
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~L 53 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 53 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 46777888888888888888888877665443
No 267
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=75.17 E-value=43 Score=29.49 Aligned_cols=55 Identities=9% Similarity=-0.025 Sum_probs=30.8
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh---CCHHHHHHHHHHH
Q 017532 259 SRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYL---RDLSDSIKVLENA 316 (370)
Q Consensus 259 ~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~---g~~~~A~~~l~~a 316 (370)
+..+|..+...|++.+|..+|-.. +.+++..+.++-.-+... |...++--++.++
T Consensus 137 H~~~a~~~~~e~~~~~A~~H~i~~---~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~Ra 194 (312)
T 2wpv_A 137 HNTIGSKLLEGDFVYEAERYFMLG---THDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRL 194 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS---CHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCHHHHHHHHHhC---CCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Confidence 566777777888888877776421 112344555444444444 5555554444444
No 268
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=74.32 E-value=26 Score=28.66 Aligned_cols=89 Identities=7% Similarity=0.019 Sum_probs=64.9
Q ss_pred HHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhCCHH
Q 017532 230 KSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIER--DYNDIVAINNKALCLMYLRDLS 307 (370)
Q Consensus 230 ~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~--~p~~~~~~~nla~~~~~~g~~~ 307 (370)
..++++++...+.+. =..||-. ..+|+..+..+ ..+...++.+.|..+... .-..+..|...|..+...|++.
T Consensus 58 ~lLErc~~~F~~~~r---YkND~RY-LklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~ 132 (202)
T 3esl_A 58 STMERCLIYIQDMET---YRNDPRF-LKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFL 132 (202)
T ss_dssp HHHHHHHHHHTTCGG---GTTCHHH-HHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhccccc---ccCCHHH-HHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 467777766555321 0345655 56666555543 244577899999988765 4667788889999999999999
Q ss_pred HHHHHHHHHHHhCCCc
Q 017532 308 DSIKVLENALERVPTV 323 (370)
Q Consensus 308 ~A~~~l~~al~~~p~~ 323 (370)
+|.++|+..++..-.+
T Consensus 133 ~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 133 EAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHHcCCcc
Confidence 9999999999987665
No 269
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=72.56 E-value=20 Score=27.58 Aligned_cols=57 Identities=14% Similarity=0.044 Sum_probs=46.6
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 017532 265 IYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALERVP 321 (370)
Q Consensus 265 ~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~p 321 (370)
.+..+|+-++=-+.+...+..++.++..+.-+|.+|.+.|+..+|-+.+.+|-+..-
T Consensus 100 ~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 100 ILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 445788888877777776666778899999999999999999999999999987654
No 270
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=71.43 E-value=21 Score=27.52 Aligned_cols=54 Identities=9% Similarity=0.069 Sum_probs=44.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017532 183 YHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEE 237 (370)
Q Consensus 183 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~ 237 (370)
.+..+|+-++-..++..++...+ ..+..+..+|..|.+.|+..+|.+.+.+|-+
T Consensus 100 ~lv~~~KkDqLdki~~~~l~n~~-~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 100 ILVIQGKRDKLEEIGREILKNNE-VSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHTTCHHHHHHHHHHHC--CC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccHhHHHHHHHHHhccCC-CChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 44566888888888888777666 7899999999999999999999999999874
No 271
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=69.20 E-value=19 Score=29.58 Aligned_cols=83 Identities=10% Similarity=-0.043 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 017532 210 ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYND 289 (370)
Q Consensus 210 ~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~ 289 (370)
...+.+|++++..++|.+|.+++.+|.+.++.. ...+. ..++..+--+.+..|+... ...+++ .+.
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~-------~~~~k-~~IL~yLIp~~Ll~G~iP~-~~ll~~----~~~- 80 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS-------SQKNK-RMILIYLLPVKMLLGHMPT-VELLKK----YHL- 80 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT-------CHHHH-HHHHHHHHHHHHHTTCEEC-HHHHHH----TTC-
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh-------HHHHH-HHHHHHHHHHHHHcCCCCC-HHHhhh----Cch-
Confidence 345788999999999999999999999887652 22332 4555555556667788654 223332 111
Q ss_pred HHHHHHHHHHHHHhCCHHH
Q 017532 290 IVAINNKALCLMYLRDLSD 308 (370)
Q Consensus 290 ~~~~~nla~~~~~~g~~~~ 308 (370)
..|..+.. ..+.|++..
T Consensus 81 -~~y~~L~~-Avr~Gdl~~ 97 (203)
T 3t5x_A 81 -MQFAEVTR-AVSEGNLLL 97 (203)
T ss_dssp -GGGHHHHH-HHHHTCHHH
T ss_pred -hHHHHHHH-HHHhCCHHH
Confidence 13555543 456666544
No 272
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=67.59 E-value=68 Score=28.57 Aligned_cols=21 Identities=10% Similarity=0.238 Sum_probs=13.5
Q ss_pred HHhHHHHHHHcCCHHHHHHHH
Q 017532 259 SRNKALIYLVGKDYVSAVREY 279 (370)
Q Consensus 259 ~~~~g~~~~~~g~~~eA~~~~ 279 (370)
+..+|..+.+.+++.+|..+|
T Consensus 139 H~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 139 HHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHH
Confidence 444666666666666666665
No 273
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=67.09 E-value=10 Score=26.71 Aligned_cols=27 Identities=15% Similarity=0.096 Sum_probs=16.4
Q ss_pred HHHHHhHHHHHHHcCCHHHHHHHHHHH
Q 017532 256 NLVSRNKALIYLVGKDYVSAVREYEEC 282 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~~~eA~~~~~~~ 282 (370)
+..+--++..+...|+|++||++.+++
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHH
Confidence 444445666666667777766666543
No 274
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=66.26 E-value=14 Score=25.95 Aligned_cols=29 Identities=14% Similarity=0.077 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 017532 290 IVAINNKALCLMYLRDLSDSIKVLENALE 318 (370)
Q Consensus 290 ~~~~~nla~~~~~~g~~~~A~~~l~~al~ 318 (370)
+..+..+|..+.+.|+|++||++.+++..
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34566789999999999999987777653
No 275
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=66.13 E-value=70 Score=28.21 Aligned_cols=22 Identities=18% Similarity=0.108 Sum_probs=19.0
Q ss_pred hHHHHHHcCChHHHHHHHHHhh
Q 017532 34 SLQDLATRGSWRTIIDNVSRAR 55 (370)
Q Consensus 34 ~l~~l~~~g~~~~Ai~~~~~~~ 55 (370)
....++..|.|+.|++++.+.+
T Consensus 22 laadhvaAGsFe~A~~lLnrQ~ 43 (320)
T 3mkr_B 22 LPVDHILAGSFETAMRLLHDQV 43 (320)
T ss_dssp CHHHHHHTTCHHHHHHHHHHHS
T ss_pred cHHHHHHccCHHHHHHHHHHHh
Confidence 4667899999999999999854
No 276
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=63.50 E-value=42 Score=26.35 Aligned_cols=60 Identities=7% Similarity=0.013 Sum_probs=47.3
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHH-HHHHH--HHhCCHHHHHHHHHHHHHh
Q 017532 260 RNKALIYLVGKDYVSAVREYEECIERDYND------IVAINN-KALCL--MYLRDLSDSIKVLENALER 319 (370)
Q Consensus 260 ~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~------~~~~~n-la~~~--~~~g~~~~A~~~l~~al~~ 319 (370)
+..|..+|..|+|=+|-+.++.+-...+.. ...+.. +|+++ ...|+...|...+.+++..
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 447888999999999999999998776554 244555 55544 4579999999999999874
No 277
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=63.28 E-value=28 Score=32.54 Aligned_cols=98 Identities=10% Similarity=0.006 Sum_probs=64.9
Q ss_pred CHHHHHHHHHHHHhCCC-------CCC----H----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHH
Q 017532 189 EYNVCFDLMNESIGRGN-------GLD----P----ILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVE 253 (370)
Q Consensus 189 ~~~~A~~~~~~~l~~~~-------~~~----~----~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~ 253 (370)
..++|...++++...-- ..+ - ...+.+-.+|++.|++.-|...+...... ...+. ........
T Consensus 141 ~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~-~~~p~-~~~~p~~q 218 (455)
T 3t5v_B 141 FLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPK-SMLAH-FNEYQLDQ 218 (455)
T ss_dssp HHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHH-CCCSC-GGGSCHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC-CCCcC-hhhCCccc
Confidence 45667777777765311 011 0 12356678999999999999999666542 11000 01122233
Q ss_pred HHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh-CCCC
Q 017532 254 FRNLVSRNKALIYLVGKDYVSAVREYEECIER-DYND 289 (370)
Q Consensus 254 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~-~p~~ 289 (370)
. ..-.+.+|..++.+++|.+|.+++..|+.. .|.+
T Consensus 219 ~-v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 219 Q-IEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp H-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred e-EeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 3 566677999999999999999999999998 7754
No 278
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=62.86 E-value=81 Score=27.83 Aligned_cols=58 Identities=9% Similarity=0.004 Sum_probs=38.8
Q ss_pred CCCHHHHHHHH-HHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCCCC
Q 017532 287 YNDIVAINNKA-LCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDDF 363 (370)
Q Consensus 287 p~~~~~~~nla-~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d~~ 363 (370)
|.+...-.+.| ...++.++|..|....++.+++.|.. + ..++.++.+....+.+.|..
T Consensus 203 p~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~---~----------------~a~qArkil~~ce~~~~Da~ 261 (325)
T 3mv2_A 203 PIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSG---P----------------RAEQARKIKNKADSMASDAI 261 (325)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS---H----------------HHHHHHHHHHHHHTSCCCSS
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH---H----------------HHHHHHHHHHHHhcCCCCcc
Confidence 44333333333 45668899999999999999999864 1 13556667766677766653
No 279
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=59.22 E-value=28 Score=27.48 Aligned_cols=85 Identities=9% Similarity=0.002 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhCCH
Q 017532 229 KKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIER--DYNDIVAINNKALCLMYLRDL 306 (370)
Q Consensus 229 ~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~--~p~~~~~~~nla~~~~~~g~~ 306 (370)
...++++++...+.+. =..||-. ..+|+..+... +++.+.|..+... .-..+..|...|..+...|++
T Consensus 43 ~~lLErc~~~f~~~~~---YknD~Ry-LklWl~ya~~~------~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~ 112 (164)
T 2wvi_A 43 STLLERAVEALQGEKR---YYSDPRF-LNLWLKLGRLC------NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENF 112 (164)
T ss_dssp HHHHHHHHHHTTTCGG---GTTCHHH-HHHHHHHHHHC------SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhh---hccCHHH-HHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCH
Confidence 4456666665444321 1345655 55665555542 4477778887765 466778888999999999999
Q ss_pred HHHHHHHHHHHHhCCCc
Q 017532 307 SDSIKVLENALERVPTV 323 (370)
Q Consensus 307 ~~A~~~l~~al~~~p~~ 323 (370)
.+|.++|...++....+
T Consensus 113 ~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 113 RKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHHHcCCCc
Confidence 99999999999988766
No 280
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=58.14 E-value=22 Score=23.86 Aligned_cols=29 Identities=17% Similarity=0.119 Sum_probs=27.2
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCCc
Q 017532 295 NKALCLMYLRDLSDSIKVLENALERVPTV 323 (370)
Q Consensus 295 nla~~~~~~g~~~~A~~~l~~al~~~p~~ 323 (370)
.+|..+...|++++|...|-+|+...|.+
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP 50 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQP 50 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 57999999999999999999999999987
No 281
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=56.51 E-value=14 Score=26.22 Aligned_cols=29 Identities=17% Similarity=0.056 Sum_probs=23.6
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 017532 260 RNKALIYLVGKDYVSAVREYEECIERDYN 288 (370)
Q Consensus 260 ~~~g~~~~~~g~~~eA~~~~~~~l~~~p~ 288 (370)
+.+|..++..|+++.|+.+|-+++...|.
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 34788888999999999988888777655
No 282
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=54.19 E-value=77 Score=24.84 Aligned_cols=61 Identities=10% Similarity=0.074 Sum_probs=44.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHH-----H-HHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 017532 181 IGYHLSSKEYNVCFDLMNESIGRGNGL--DPIL-----V-SKLGFIQMQVGDLEGAKKSFNRVEEMLNE 241 (370)
Q Consensus 181 a~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~-----~-~~lg~~~~~~g~~~~A~~~~~~a~~l~~~ 241 (370)
+..++..|+|=+|-+.++.+-...+.. .... . ...|..+.+.|+...|...+.+++.....
T Consensus 39 ~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~ 107 (161)
T 2ijq_A 39 GVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRG 107 (161)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 345666799999999999998776622 1222 2 33455667899999999999999876543
No 283
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=52.97 E-value=17 Score=25.82 Aligned_cols=29 Identities=17% Similarity=0.215 Sum_probs=23.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 017532 213 SKLGFIQMQVGDLEGAKKSFNRVEEMLNE 241 (370)
Q Consensus 213 ~~lg~~~~~~g~~~~A~~~~~~a~~l~~~ 241 (370)
..+|..++..|+++.|..+|-+|+.+++.
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 46788888899999999999999877654
No 284
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=51.88 E-value=70 Score=26.44 Aligned_cols=76 Identities=14% Similarity=0.101 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q 017532 225 LEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLR 304 (370)
Q Consensus 225 ~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g 304 (370)
++.|+..++...+-.+-. ....-.++..+....-.++++.|.|++|.+.+++....+|.+.....-|..+-.+..
T Consensus 88 LESAl~v~~~I~~e~~l~-----~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd 162 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLT-----EAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKN 162 (235)
T ss_dssp HHHHHHHHHHHHHHTTCC-----HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhhcCc-----HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccC
Confidence 466777776665321100 011112222223334456788999999999999999887776666666655444433
Q ss_pred C
Q 017532 305 D 305 (370)
Q Consensus 305 ~ 305 (370)
.
T Consensus 163 ~ 163 (235)
T 3bu8_A 163 L 163 (235)
T ss_dssp T
T ss_pred c
Confidence 3
No 285
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=49.49 E-value=65 Score=22.62 Aligned_cols=61 Identities=7% Similarity=-0.114 Sum_probs=37.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHh
Q 017532 215 LGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIE 284 (370)
Q Consensus 215 lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~ 284 (370)
.|..++..|+|-+|-+.++.+-.-.++ ....-.++.+...-|......|+. |...+++++.
T Consensus 7 ~~~~lfn~g~~~eaHEvlE~~W~~~~~-------~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 7 EVLGLWRAGRYYEVHEVLEPYWLKATG-------EERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHhhCCC-------chHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 466777889999999998888753211 111112344445556666666776 7777777665
No 286
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=49.44 E-value=62 Score=22.32 Aligned_cols=29 Identities=21% Similarity=0.181 Sum_probs=20.6
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHHHHHhh
Q 017532 257 LVSRNKALIYLVGKDYVSAVREYEECIER 285 (370)
Q Consensus 257 ~~~~~~g~~~~~~g~~~eA~~~~~~~l~~ 285 (370)
......|.-.-..|+|++|+.+|..+++.
T Consensus 17 ~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 17 ATVLKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33445566667788888888888887754
No 287
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=49.33 E-value=47 Score=27.11 Aligned_cols=52 Identities=10% Similarity=-0.066 Sum_probs=38.0
Q ss_pred HHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-----HHHHHHHHHHHhCCHH
Q 017532 256 NLVSRNKALIYLVGKDYVSAVREYEECIERDYNDIV-----AINNKALCLMYLRDLS 307 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~-----~~~nla~~~~~~g~~~ 307 (370)
..-.+.+|.+++..++|.+|.+.|.+++...|.... ++..+..+-+-+|++.
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP 70 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMP 70 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCC
Confidence 555677999999999999999999999999876542 2233333444567643
No 288
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=49.27 E-value=1.4e+02 Score=26.35 Aligned_cols=29 Identities=14% Similarity=0.122 Sum_probs=22.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 017532 177 LNCLIGYHLSSKEYNVCFDLMNESIGRGN 205 (370)
Q Consensus 177 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 205 (370)
+..-....++.++|..|....+++++..|
T Consensus 210 Lr~AM~~a~K~KNy~tAa~fArrLLel~p 238 (325)
T 3mv2_A 210 LQVAMSQHFKHKNFLQASYFAGEFLKIIS 238 (325)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 33444567788999999999999999888
No 289
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=46.18 E-value=68 Score=21.92 Aligned_cols=26 Identities=19% Similarity=0.137 Sum_probs=16.9
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHhh
Q 017532 260 RNKALIYLVGKDYVSAVREYEECIER 285 (370)
Q Consensus 260 ~~~g~~~~~~g~~~eA~~~~~~~l~~ 285 (370)
...|.-.-..|+|++|+.+|.++++.
T Consensus 23 v~~Ave~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 23 AINAVKADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34555556777777777777766543
No 290
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=43.09 E-value=81 Score=30.97 Aligned_cols=50 Identities=14% Similarity=-0.049 Sum_probs=43.7
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCH
Q 017532 257 LVSRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDL 306 (370)
Q Consensus 257 ~~~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~ 306 (370)
......|...+..|+|.-|.+....++..+|+|..+...+|.+|..+|.-
T Consensus 450 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~ 499 (658)
T 2cfu_A 450 ERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQ 499 (658)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Confidence 34556788889999999999999999999999999999999998877743
No 291
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=42.73 E-value=84 Score=21.95 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=15.7
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHhh
Q 017532 260 RNKALIYLVGKDYVSAVREYEECIER 285 (370)
Q Consensus 260 ~~~g~~~~~~g~~~eA~~~~~~~l~~ 285 (370)
...|.-.-..|+|++|+.+|..+++.
T Consensus 19 v~~Ave~D~~g~y~eAl~~Y~~Aie~ 44 (93)
T 1wfd_A 19 LKRAVELDAESRYQQALVCYQEGIDM 44 (93)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 33444555667777777777666543
No 292
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=41.44 E-value=1.3e+02 Score=31.05 Aligned_cols=66 Identities=9% Similarity=-0.190 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC---------------------CHHHHHHHHHHHHHcCCHHHHHHH
Q 017532 174 IFVLNCLIGYHLSSKEYNVCFDLMNESIGR-GNGL---------------------DPILVSKLGFIQMQVGDLEGAKKS 231 (370)
Q Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~---------------------~~~~~~~lg~~~~~~g~~~~A~~~ 231 (370)
...-|.+|.+++..|++++|..+|+++-.- .... ....|..+..++.+.|-++-++..
T Consensus 840 ~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~f 919 (950)
T 4gq2_M 840 PIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEF 919 (950)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 334589999999999999999999987421 1100 012345667778888888888888
Q ss_pred HHHHHHHh
Q 017532 232 FNRVEEML 239 (370)
Q Consensus 232 ~~~a~~l~ 239 (370)
.+.|++..
T Consensus 920 A~lAI~~~ 927 (950)
T 4gq2_M 920 SLLADASK 927 (950)
T ss_dssp HHHHHHTC
T ss_pred HHHHHhhc
Confidence 88888643
No 293
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=41.31 E-value=1.9e+02 Score=25.51 Aligned_cols=58 Identities=16% Similarity=0.155 Sum_probs=37.4
Q ss_pred CCCCHHHHHHHH-HHHHHhCCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhccCCchhhHHHHHHHHhhhCCCC
Q 017532 286 DYNDIVAINNKA-LCLMYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSSWIGRVAPDD 362 (370)
Q Consensus 286 ~p~~~~~~~nla-~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~nl~~lyel~~~~~~~~~~~ll~~~~~~~~d~ 362 (370)
.|.+...-...| ...++.++|..|....++.+++.|+. + ..++.++.+....+.+.|.
T Consensus 193 qp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~---~----------------~~~qArkil~~ce~~~~da 251 (320)
T 3mkr_B 193 QPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKP---E----------------VAQQTRKILSACEKNPTDA 251 (320)
T ss_dssp CHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCH---H----------------HHHHHHHHHHHHHHSCCBS
T ss_pred cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH---H----------------HHHHHHHHHHHHhcCCCCc
Confidence 344443333333 45668899999999999999998863 1 1244566666666665554
No 294
>1g92_A Poneratoxin, PAC-TX; neurotoxin, sodium channel inhibitor; NMR {Synthetic} SCOP: j.19.1.2
Probab=40.34 E-value=8.9 Score=19.04 Aligned_cols=6 Identities=67% Similarity=1.204 Sum_probs=4.4
Q ss_pred CCCccc
Q 017532 4 SPPVCQ 9 (370)
Q Consensus 4 ~~~~~~ 9 (370)
.|||||
T Consensus 13 tppviq 18 (26)
T 1g92_A 13 TPPVIQ 18 (26)
T ss_dssp SCCTTT
T ss_pred CcHHHH
Confidence 478877
No 295
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=38.82 E-value=1.1e+02 Score=25.40 Aligned_cols=45 Identities=11% Similarity=0.108 Sum_probs=33.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 017532 179 CLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGD 224 (370)
Q Consensus 179 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~ 224 (370)
..+.+++++|.|++|..++++....++ ..-.....|..+-.+..-
T Consensus 119 qAV~VCiek~~f~kA~eiLkr~~~~~~-s~~kLr~kL~~II~~Kd~ 163 (235)
T 3bu8_A 119 AAVIICIKNKEFEKASKILKKHMSKDP-TTQKLRNDLLNIIREKNL 163 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHSTTCG-GGHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHhcchHHHHHHHHHHhcCCC-CchHHHHHHHHHHhccCc
Confidence 444577899999999999999998876 555566666665544433
No 296
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=37.88 E-value=94 Score=21.13 Aligned_cols=24 Identities=21% Similarity=0.101 Sum_probs=14.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Q 017532 262 KALIYLVGKDYVSAVREYEECIER 285 (370)
Q Consensus 262 ~g~~~~~~g~~~eA~~~~~~~l~~ 285 (370)
.|.-.-..|+|++|+.+|.++++.
T Consensus 17 ~Ave~D~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 17 LAVKADKEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHH
Confidence 344445667777777777666543
No 297
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=37.46 E-value=47 Score=24.47 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=15.1
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhh
Q 017532 261 NKALIYLVGKDYVSAVREYEECIER 285 (370)
Q Consensus 261 ~~g~~~~~~g~~~eA~~~~~~~l~~ 285 (370)
..|.-.-..|+|++|+.+|..+++.
T Consensus 23 ~~Ave~D~ag~y~eAl~lY~~Aie~ 47 (117)
T 2cpt_A 23 SKAAQEDKAGNYEEALQLYQHAVQY 47 (117)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3444445567777777777666543
No 298
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=36.97 E-value=59 Score=22.26 Aligned_cols=25 Identities=16% Similarity=0.069 Sum_probs=17.6
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 295 NKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 295 nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
..|+-.-..|++++|+..|..+++.
T Consensus 24 ~~Ave~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 24 INAVKADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3455566788888888888877653
No 299
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=35.17 E-value=1.2e+02 Score=21.72 Aligned_cols=52 Identities=10% Similarity=0.102 Sum_probs=39.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017532 179 CLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVE 236 (370)
Q Consensus 179 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~ 236 (370)
.+...+..+|+|++|..+.+.. ..+++-..++.+-.+.|-.+++...+.+..
T Consensus 44 IR~sSLmNrG~Yq~Al~l~~~~------c~pdlepw~ALce~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 44 IRISSLANQGRYQEALAFAHGN------PWPALEPWFALCEWHLGLGAALDRRLAGLG 95 (115)
T ss_dssp HHHHHHHHTTCHHHHHGGGTTC------CCGGGHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcchhHHHHHHhcCCC------CCchHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 4456788899999999876543 345566667778889999999888886654
No 300
>3dza_A Uncharacterized putative membrane protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=34.60 E-value=1.8e+02 Score=23.41 Aligned_cols=62 Identities=15% Similarity=-0.068 Sum_probs=48.4
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHHHHH-hh------CCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 017532 257 LVSRNKALIYLVGKDYVSAVREYEECI-ER------DYND-IVAINNKALCLMYLRDLSDSIKVLENALE 318 (370)
Q Consensus 257 ~~~~~~g~~~~~~g~~~eA~~~~~~~l-~~------~p~~-~~~~~nla~~~~~~g~~~~A~~~l~~al~ 318 (370)
...+..++-.++.|+...|.+.++-+= .. -|-. ..-..+.|..++..|++.+|-..|..+..
T Consensus 109 ~aAI~~AN~~Lk~Gd~~~A~~~LklAgvdv~~~~allPL~qT~~~V~~A~~ll~~gk~yeAn~aLk~Aed 178 (191)
T 3dza_A 109 ESAIQSANEKLAKGDQKGAIDTLRLAGIGVIENQYLMPLNQTRKAVAQSQELLKAGKYYEANLVLKGAEE 178 (191)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTTCEEEEEEEEEEHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHcCCchhhhhhhCChHhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 456778999999999999999887651 11 1322 24566889999999999999999998865
No 301
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=33.32 E-value=1.3e+02 Score=21.57 Aligned_cols=52 Identities=15% Similarity=0.188 Sum_probs=39.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017532 179 CLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVE 236 (370)
Q Consensus 179 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~ 236 (370)
.+...+..+|+|++|..+.+.. ..+++-..++.+-.+.|-.+++...+.+..
T Consensus 45 IR~sSLmNrG~Yq~Al~l~~~~------c~pdlepw~ALce~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 45 IRLSSLMNRGDYASALQQGNKL------AYPDLEPWLALCEYRLGLGSALESRLNRLA 96 (116)
T ss_dssp HHHHHHHHTTCHHHHHHHHTTS------CCGGGHHHHHHHHHHHTCHHHHHHHHHHHT
T ss_pred HHHHHHHcchhHHHHHHhcCCC------CCchHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 4456788899999999887654 345555666777888999998888775554
No 302
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=32.58 E-value=76 Score=28.57 Aligned_cols=49 Identities=12% Similarity=0.031 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHh
Q 017532 228 AKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIE 284 (370)
Q Consensus 228 A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~ 284 (370)
++..|.+++...+.-.. ..- ..-+..+|-.+++.+++.||+..+-.+-.
T Consensus 276 ~l~L~~~AI~sa~~yY~--n~H------vYPYtylgGy~yR~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 276 AEELFKEAITVAKREYS--DHH------IYPYTYLGGYYYRKKKYYEAIASWVDAGY 324 (472)
T ss_dssp HHHHHHHHHHHHHHHST--TCC------SHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc--cCC------ccchhhhhhhhhhcchHHHHHHHHHHHHH
Confidence 77778887766543210 001 34466688899999999999999887754
No 303
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=32.46 E-value=43 Score=22.75 Aligned_cols=25 Identities=12% Similarity=0.170 Sum_probs=18.0
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 295 NKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 295 nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
.+|.=+...|+|+.|+.+|+.+++.
T Consensus 17 k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 17 KLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHH
Confidence 4566677778888888888777654
No 304
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=32.44 E-value=1.2e+02 Score=20.61 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=17.3
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHhh
Q 017532 260 RNKALIYLVGKDYVSAVREYEECIER 285 (370)
Q Consensus 260 ~~~g~~~~~~g~~~eA~~~~~~~l~~ 285 (370)
...|.-.-..|+|++|+.+|..+++.
T Consensus 17 ~~~Av~~D~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 17 VQKAIDLDTATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33455555678888888877777654
No 305
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=32.24 E-value=77 Score=21.59 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=15.4
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Q 017532 296 KALCLMYLRDLSDSIKVLENALE 318 (370)
Q Consensus 296 la~~~~~~g~~~~A~~~l~~al~ 318 (370)
.|+-.-+.|++++|+..|..+++
T Consensus 17 ~Ave~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 17 LAVKADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 34455667777777777777664
No 306
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=32.05 E-value=39 Score=22.97 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=22.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017532 213 SKLGFIQMQVGDLEGAKKSFNRVEEM 238 (370)
Q Consensus 213 ~~lg~~~~~~g~~~~A~~~~~~a~~l 238 (370)
..+|+=+...|+|+.|+.+|+.++..
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 56788888999999999999998854
No 307
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.90 E-value=70 Score=23.51 Aligned_cols=24 Identities=25% Similarity=0.023 Sum_probs=12.0
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHH
Q 017532 260 RNKALIYLVGKDYVSAVREYEECI 283 (370)
Q Consensus 260 ~~~g~~~~~~g~~~eA~~~~~~~l 283 (370)
++.|+..-..|+-++|+++|++.+
T Consensus 26 Is~AL~~DE~g~k~~Al~lYk~GI 49 (116)
T 2dl1_A 26 VNKGLNTDELGQKEEAKNYYKQGI 49 (116)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhhhhcCCHHHHHHHHHHHH
Confidence 333444444466566655555544
No 308
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=31.08 E-value=1.6e+02 Score=21.96 Aligned_cols=53 Identities=15% Similarity=0.182 Sum_probs=35.6
Q ss_pred HHHHHhcCCHHHHHHHHHHH---HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017532 181 IGYHLSSKEYNVCFDLMNES---IGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEE 237 (370)
Q Consensus 181 a~~~~~~g~~~~A~~~~~~~---l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~ 237 (370)
...++..++.+..+..++.+ ++.+| .+....+.......++.+|.+++++..+
T Consensus 47 Srlyf~~~n~~~m~~~L~pLh~~l~~~P----eT~~E~sF~~~fG~~L~~A~~~~~~y~~ 102 (126)
T 2npu_A 47 SRLYFGERNVKGMFEVLEPLHAMMERGP----QTLKETSFNQAYGRDLMEAQEWCRKYMK 102 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSC----CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccCHHHHHHHHHHHHHHHccCC----CCHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34666789999998888766 55455 2333444444455677888888888764
No 309
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=30.62 E-value=2.2e+02 Score=23.17 Aligned_cols=51 Identities=12% Similarity=0.083 Sum_probs=40.9
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 017532 187 SKEYNVCFDLMNESIGRGNG-LDPILVSKLGFIQMQVGDLEGAKKSFNRVEE 237 (370)
Q Consensus 187 ~g~~~~A~~~~~~~l~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~ 237 (370)
.++..++..+|.-+...+-+ ..+..|-.-|..+...|++.+|.+.|+..++
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~ 143 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAE 143 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35577888888888765541 5566677788999999999999999999996
No 310
>2aff_B MKI67 FHA domain interacting nucleolar phosphoPro; NIFK, , phosphoprotein, cell cycle; HET: SEP TPO; NMR {Homo sapiens}
Probab=30.55 E-value=12 Score=22.03 Aligned_cols=7 Identities=43% Similarity=1.056 Sum_probs=3.2
Q ss_pred CCCCccc
Q 017532 3 ESPPVCQ 9 (370)
Q Consensus 3 ~~~~~~~ 9 (370)
+++|||.
T Consensus 7 ~~TPVCt 13 (44)
T 2aff_B 7 GPTPVCT 13 (44)
T ss_dssp SCCCCCC
T ss_pred CCCCccc
Confidence 3444443
No 311
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=30.42 E-value=1.4e+02 Score=20.79 Aligned_cols=38 Identities=8% Similarity=0.078 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 017532 167 KSWKKREIFVLNCLIGYHLSSKEYNVCFDLMNESIGRG 204 (370)
Q Consensus 167 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 204 (370)
.+.++..++.+..-|.-+++.++|.+|..+++++....
T Consensus 46 ~ll~e~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~t 83 (106)
T 2vkj_A 46 ELLKEKKARSLIAEGKDLFETANYGEALVFFEKALNLS 83 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhhhHHHHHHHHHHHHHHhcchhHHHHHHHHHHccc
Confidence 34444556666677777888888888888888886544
No 312
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=29.99 E-value=88 Score=21.50 Aligned_cols=27 Identities=7% Similarity=0.132 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 293 INNKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 293 ~~nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
+...|+-.-..|++++|+..|..+++.
T Consensus 19 lv~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 19 VLKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344556667788888888888887754
No 313
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=29.67 E-value=91 Score=28.86 Aligned_cols=49 Identities=12% Similarity=0.022 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhCCC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017532 190 YNVCFDLMNESIGRGN-------GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEM 238 (370)
Q Consensus 190 ~~~A~~~~~~~l~~~~-------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l 238 (370)
|+..+..++.++..-| .....++..+|++|+.+|++++|.+..++++..
T Consensus 164 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 164 YDFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp HHHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 3445555666654433 123467789999999999999999999999864
No 314
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=28.76 E-value=1e+02 Score=22.15 Aligned_cols=54 Identities=19% Similarity=-0.021 Sum_probs=39.0
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 017532 259 SRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENAL 317 (370)
Q Consensus 259 ~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al 317 (370)
.+.+...++.+|+|++|....+..- .+..--.+|.|--+.|-.+++..-+.++-
T Consensus 43 ~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 43 QLIRLSSLMNRGDYASALQQGNKLA-----YPDLEPWLALCEYRLGLGSALESRLNRLA 96 (116)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTTSC-----CGGGHHHHHHHHHHHTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 3446677889999999987665432 44455567888889999999888875543
No 315
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=28.44 E-value=84 Score=30.84 Aligned_cols=50 Identities=12% Similarity=-0.082 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 017532 175 FVLNCLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDL 225 (370)
Q Consensus 175 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~ 225 (370)
......|...+..|+|.-|.++++.++..+| ++..+...++.++.++|.-
T Consensus 450 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p-~~~~a~~l~a~~~~~l~~~ 499 (658)
T 2cfu_A 450 ERLLEQARASYARGEYRWVVEVVNRLVFAEP-DNRAARELQADALEQLGYQ 499 (658)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHHh
Confidence 3444667777889999999999999999999 9999999999999888743
No 316
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=28.12 E-value=96 Score=28.72 Aligned_cols=29 Identities=24% Similarity=0.143 Sum_probs=25.3
Q ss_pred HHHHHhHHHHHHHcCCHHHHHHHHHHHHh
Q 017532 256 NLVSRNKALIYLVGKDYVSAVREYEECIE 284 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~~~eA~~~~~~~l~ 284 (370)
..+...+|.+|+.+|+|++|++..++++.
T Consensus 190 ~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 190 YAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 45667799999999999999999999985
No 317
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=27.93 E-value=1.1e+02 Score=28.43 Aligned_cols=49 Identities=12% Similarity=0.070 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhCCCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017532 190 YNVCFDLMNESIGRGNG-------LDPILVSKLGFIQMQVGDLEGAKKSFNRVEEM 238 (370)
Q Consensus 190 ~~~A~~~~~~~l~~~~~-------~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l 238 (370)
|+..+..++.++..-|. ....++..+|++|+.+|++++|.+..++++..
T Consensus 176 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 176 YEQVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 45556667777654441 23467789999999999999999999999864
No 318
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.36 E-value=1.5e+02 Score=21.66 Aligned_cols=49 Identities=6% Similarity=-0.153 Sum_probs=35.1
Q ss_pred CCCCcccCCCCCCCccccccCCCCCcCCChHhHHHHHHcCChHHHHHHHHHh
Q 017532 3 ESPPVCQNPSRFTDPLTNAFGSLNDLVPDLASLQDLATRGSWRTIIDNVSRA 54 (370)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~ 54 (370)
.|-||.+||++..-|-+--+ --=|.+...++.-+..|.|...-+....+
T Consensus 24 ~~~~F~~pv~~~~~pdY~~i---Ik~PmdL~tI~~kl~~~~Y~s~~ef~~D~ 72 (121)
T 2d9e_A 24 TGNIFSEPVPLSEVPDYLDH---IKKPMDFFTMKQNLEAYRYLNFDDFEEDF 72 (121)
T ss_dssp SSCSSSSCCCTTTCTTHHHH---CSSCCCHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred ccHhhCCcCCccccCCHHHH---cCCCcCHHHHHHHHhcCCCCCHHHHHHHH
Confidence 46788888876555533333 23467889999999999999887666654
No 319
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=26.95 E-value=1.7e+02 Score=24.44 Aligned_cols=55 Identities=7% Similarity=0.077 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHh
Q 017532 226 EGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIE 284 (370)
Q Consensus 226 ~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~ 284 (370)
+.|...|++|..+....-. +.+|-..+.+++---+.|-..++.++|+..-++++.
T Consensus 150 e~a~~aY~~A~~iA~~~L~----pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd 204 (236)
T 3iqu_A 150 DSARSAYQEAMDISKKEMP----PTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFD 204 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSC----TTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCC----CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 320
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=26.60 E-value=1e+02 Score=28.57 Aligned_cols=29 Identities=21% Similarity=0.204 Sum_probs=25.5
Q ss_pred HHHHHhHHHHHHHcCCHHHHHHHHHHHHh
Q 017532 256 NLVSRNKALIYLVGKDYVSAVREYEECIE 284 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~~~eA~~~~~~~l~ 284 (370)
..++..+|.+|+.+|+|++|+...++++.
T Consensus 196 ~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 196 WAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 55667799999999999999999999986
No 321
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=26.60 E-value=1.1e+02 Score=20.81 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=16.8
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 295 NKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 295 nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
..|+-.-..|++++|+..|..+++.
T Consensus 18 ~~Av~~D~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 18 QKAIDLDTATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444556678888888887777653
No 322
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=26.55 E-value=1.1e+02 Score=21.41 Aligned_cols=23 Identities=9% Similarity=0.166 Sum_probs=13.0
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Q 017532 296 KALCLMYLRDLSDSIKVLENALE 318 (370)
Q Consensus 296 la~~~~~~g~~~~A~~~l~~al~ 318 (370)
.|+-.-..|++++|+..|..+++
T Consensus 21 ~Ave~D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 21 RAVELDAESRYQQALVCYQEGID 43 (93)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 34444555666666666665554
No 323
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=25.74 E-value=2.9e+02 Score=23.00 Aligned_cols=54 Identities=9% Similarity=-0.018 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHH
Q 017532 226 EGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECI 283 (370)
Q Consensus 226 ~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l 283 (370)
+.|...|++|..+.... -.+.+|-..+.++.---+.|-..|+.++|+..-++++
T Consensus 147 e~a~~aY~~A~~iA~~~----L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~af 200 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTE----LPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAF 200 (234)
T ss_dssp HHHHHHHHHHHHHHHHH----SCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcc----CCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 57788888888776432 1255665523333222333444778887777666554
No 324
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=25.43 E-value=2.9e+02 Score=22.90 Aligned_cols=80 Identities=11% Similarity=-0.013 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHHHHHHH
Q 017532 223 GDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIER------DYNDIVAINNK 296 (370)
Q Consensus 223 g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~------~p~~~~~~~nl 296 (370)
|+.+.|...|+.|..+...... +.+|-..+.+++---+.|-..++.++|+..-++++.. ++.+..-.-..
T Consensus 139 g~~e~a~~aY~~A~~iA~~~L~----pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~~~~~~~~E~m~~~~~~ 214 (227)
T 2o8p_A 139 CSLEDSKKIHQDAFTLLCEHPD----KIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKILELQIKEQENMDRKAQI 214 (227)
T ss_dssp SCHHHHHHHHHHHHHHHHHCGG----GGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhhCC----CCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhhccccchhHHHH
Q ss_pred HHHHHHhCCH
Q 017532 297 ALCLMYLRDL 306 (370)
Q Consensus 297 a~~~~~~g~~ 306 (370)
-+.+.-.+++
T Consensus 215 ~~~~q~~~d~ 224 (227)
T 2o8p_A 215 TVYLQGIKDY 224 (227)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHh
No 325
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=25.25 E-value=1.1e+02 Score=28.43 Aligned_cols=48 Identities=8% Similarity=-0.092 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhCCC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017532 191 NVCFDLMNESIGRGN-------GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEM 238 (370)
Q Consensus 191 ~~A~~~~~~~l~~~~-------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l 238 (370)
+..+..++.++..-| .....++..+|++|+.+|++++|.+..++++..
T Consensus 171 ~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 171 TEIISDLKNSTELLSGDFNKGKVNRWAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp HHHHHHHHHHHHHSCCSCCTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccccCCCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 344555555554333 123467889999999999999999999999864
No 326
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=24.98 E-value=1.2e+02 Score=28.44 Aligned_cols=30 Identities=13% Similarity=0.101 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017532 209 PILVSKLGFIQMQVGDLEGAKKSFNRVEEM 238 (370)
Q Consensus 209 ~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l 238 (370)
..++..+|++|+.+|++++|.++.++++..
T Consensus 203 ~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 203 EVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 467789999999999999999999999854
No 327
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=24.78 E-value=3.6e+02 Score=23.81 Aligned_cols=122 Identities=17% Similarity=0.136 Sum_probs=62.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HH---hhcCCccCCccchHHHHHHHHHhHH-HHHHHcCCHH
Q 017532 206 GLDPILVSKLGFIQMQVGDLEGAKKSFNRVE--------EM---LNEGKFEDGLLSEVEFRNLVSRNKA-LIYLVGKDYV 273 (370)
Q Consensus 206 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~--------~l---~~~~~~~~~~~~~p~~~~~~~~~~g-~~~~~~g~~~ 273 (370)
..++.+...+|..+++.|++.+|..+|-... ++ .... ....+. ..++.+| ..|...++..
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~----~~~~e~----dlfiaRaVL~yL~l~n~~ 204 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQ----DESHTA----PLYCARAVLPYLLVANVR 204 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHT----SCGGGH----HHHHHHHHHHHHHTTCHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHh----cCCccH----HHHHHHHHHHHHHhCCHH
Confidence 3566666666666666666666666652100 00 0000 001122 2233333 4456778888
Q ss_pred HHHHHHHHHHh----hCC------------------CCHHH-HHHHHHHHHHhCC---HHHHHHHHHHHHHhCC-Ccchh
Q 017532 274 SAVREYEECIE----RDY------------------NDIVA-INNKALCLMYLRD---LSDSIKVLENALERVP-TVALN 326 (370)
Q Consensus 274 eA~~~~~~~l~----~~p------------------~~~~~-~~nla~~~~~~g~---~~~A~~~l~~al~~~p-~~~~~ 326 (370)
.|...|..-++ .+| ..+.. +..+.+..+..+. +..-.+.|...++.+| ..
T Consensus 205 ~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLllt~q~~~~~lF~~L~~~Y~~~l~rd~~~~--- 281 (336)
T 3lpz_A 205 AANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISMLLLSVQKGSPDLFRQLKSKYEANLNELNGIW--- 281 (336)
T ss_dssp HHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHHHHHHHHHSCCHHHHHHHHHHTHHHHHTTTTTT---
T ss_pred HHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcHHHH---
Confidence 88776554442 233 22321 2234445555664 4444555666666676 55
Q ss_pred HHHHHHHHHHHH
Q 017532 327 ETLVVNLCSMYE 338 (370)
Q Consensus 327 ~~~~~nl~~lye 338 (370)
...+-.++.+|-
T Consensus 282 ~~~L~~IG~~YF 293 (336)
T 3lpz_A 282 DTALELIAEMYF 293 (336)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 666777777775
No 328
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=24.54 E-value=58 Score=22.70 Aligned_cols=24 Identities=25% Similarity=0.058 Sum_probs=13.0
Q ss_pred HhHHHHHHHc---CCHHHHHHHHHHHH
Q 017532 260 RNKALIYLVG---KDYVSAVREYEECI 283 (370)
Q Consensus 260 ~~~g~~~~~~---g~~~eA~~~~~~~l 283 (370)
++.|+..-.. |+-++|+.+|++.+
T Consensus 20 Is~aL~~DE~~~~G~k~~A~~~YkkGi 46 (89)
T 3eab_A 20 ISIALRIDEDEKAGQKEQAVEWYKKGI 46 (89)
T ss_dssp HHHHHHHHHHSCSSSGGGSHHHHHHHH
T ss_pred HHHHHHhhhcccCCCHHHHHHHHHHHH
Confidence 3344444444 66666666666554
No 329
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=24.42 E-value=79 Score=25.74 Aligned_cols=43 Identities=19% Similarity=0.156 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 017532 179 CLIGYHLSSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQV 222 (370)
Q Consensus 179 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~ 222 (370)
..+.+++++|.|++|..++++....++ .+......|..+-.+.
T Consensus 122 qAV~VCiekg~Fk~A~eiLkr~f~~~~-~~~~lr~kL~~II~~K 164 (211)
T 3bqo_A 122 QAIAVCMENGNFKEAEEVFERIFGDPN-SHMPFKSKLLMIISQK 164 (211)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC------CCTTHHHHHHHHHTT
T ss_pred HHHHHHHHccchHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcc
Confidence 445678899999999999999988877 5544555555544433
No 330
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=23.92 E-value=1.2e+02 Score=22.32 Aligned_cols=23 Identities=9% Similarity=0.118 Sum_probs=14.3
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHh
Q 017532 297 ALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 297 a~~~~~~g~~~~A~~~l~~al~~ 319 (370)
|+-.-..|++++|+.+|..+++.
T Consensus 25 Ave~D~ag~y~eAl~lY~~Aie~ 47 (117)
T 2cpt_A 25 AAQEDKAGNYEEALQLYQHAVQY 47 (117)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHH
Confidence 33445567777777777766653
No 331
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=23.29 E-value=2.1e+02 Score=26.67 Aligned_cols=33 Identities=12% Similarity=0.188 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 017532 288 NDIVAINNKALCLMYLRDLSDSIKVLENALERV 320 (370)
Q Consensus 288 ~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~~ 320 (370)
+-..++..+|.+++..|++++|++..++++...
T Consensus 201 tk~aA~allArvyL~~~~~~~A~~~a~~vi~~~ 233 (495)
T 3lew_A 201 DNEVVLGILSRACLYARQWEKAKTYSDKLLAKD 233 (495)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 334678889999999999999999999998763
No 332
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=23.25 E-value=2.7e+02 Score=21.75 Aligned_cols=47 Identities=9% Similarity=-0.099 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 017532 192 VCFDLMNESIGRGN-GLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEM 238 (370)
Q Consensus 192 ~A~~~~~~~l~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l 238 (370)
.+..+|.-+...+- ...+..+..-|..+...|++.+|.+.|+..++.
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~ 125 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ 125 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 36667777766554 155666677889999999999999999999963
No 333
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=23.25 E-value=1.3e+02 Score=27.61 Aligned_cols=49 Identities=4% Similarity=-0.155 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHh
Q 017532 228 AKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIE 284 (370)
Q Consensus 228 A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~ 284 (370)
++..|.+++...+.-.. ..- ..-+..+|-.+++.+++.||+..+-.+-.
T Consensus 298 ~~~L~~~AI~sa~~~Y~--n~H------vYPYtYlgGy~yR~~~~reAl~~WA~Aa~ 346 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYR--DEH------IYPYMYLAGYHCRNRNVREALQAWADTAT 346 (550)
T ss_dssp HHHHHHHHHHHHHHHST--TCC------SHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc--cCC------ccceeecchhhhhcchHHHHHHHHHHHHH
Confidence 66677777765443210 001 34456688888999999999888877643
No 334
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=23.21 E-value=1.4e+02 Score=27.52 Aligned_cols=73 Identities=5% Similarity=-0.020 Sum_probs=45.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHH
Q 017532 188 KEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYL 267 (370)
Q Consensus 188 g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~ 267 (370)
.+|--|+..+-++-+..| .. |+ +.++..|++|++..+.-. .+. ...-+..+|-.++
T Consensus 259 ~~YPmALgnLgDLEei~p-t~--------------gr-p~~~~Lf~~AI~~ar~~Y------~~~--hvYPYtYlgG~~~ 314 (489)
T 4gq4_A 259 ERYPMALGNLADLEELEP-TP--------------GR-PDPLTLYHKGIASAKTYY------RDE--HIYPYMYLAGYHC 314 (489)
T ss_dssp TTCHHHHHHHHHHHHHSC-CT--------------TS-CCHHHHHHHHHHHHHHHS------TTC--CSHHHHHHHHHHH
T ss_pred hhcchhhhcccCHhhcCC-CC--------------CC-CCHHHHHHHHHHHHHHhc------ccC--cccceeecchHHH
Confidence 456666666665555555 21 11 245678888887655421 111 1344566888889
Q ss_pred HcCCHHHHHHHHHHHHh
Q 017532 268 VGKDYVSAVREYEECIE 284 (370)
Q Consensus 268 ~~g~~~eA~~~~~~~l~ 284 (370)
+.++|.+|+..+..+-.
T Consensus 315 R~~~~~eAl~~wa~aa~ 331 (489)
T 4gq4_A 315 RNRNVREALQAWADTAT 331 (489)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHhhhhhh
Confidence 99999999999888754
No 335
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=23.21 E-value=1.5e+02 Score=26.68 Aligned_cols=79 Identities=14% Similarity=0.085 Sum_probs=50.4
Q ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh----
Q 017532 213 SKLGFIQMQVG---DLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIER---- 285 (370)
Q Consensus 213 ~~lg~~~~~~g---~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~---- 285 (370)
..|-+++...| +|..|+..+-...++.+... .| .++..|.+++..
T Consensus 239 q~LLWLLyD~GhL~rYPmALgnLgDLEe~~pt~g-------r~---------------------~~l~L~~~AI~sa~~y 290 (472)
T 3re2_A 239 QELLWLLYDMGHIKTYPMAIANLGDLEEISPTPG-------RP---------------------PAEELFKEAITVAKRE 290 (472)
T ss_dssp HHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTT-------SC---------------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchhhCchhhcchhhHHhcCCCCC-------CC---------------------CHHHHHHHHHHHHHHH
Confidence 44455555555 45667766666666655421 11 134444444433
Q ss_pred -CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 286 -DYNDIVAINNKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 286 -~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
+..+...|..+|-.+++.+++.+|+..+..+-..
T Consensus 291 Y~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~V 325 (472)
T 3re2_A 291 YSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYV 325 (472)
T ss_dssp STTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hccCCccchhhhhhhhhhcchHHHHHHHHHHHHHH
Confidence 3455667788899999999999999999987554
No 336
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=23.03 E-value=3.5e+02 Score=22.96 Aligned_cols=54 Identities=11% Similarity=0.006 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHH-HHHHHcCCHHHHHHHHHHHH
Q 017532 225 LEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKA-LIYLVGKDYVSAVREYEECI 283 (370)
Q Consensus 225 ~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g-~~~~~~g~~~eA~~~~~~~l 283 (370)
.+.|...|++|..+.... -.+.+|-..+. ..|.+ +.|-..++.++|+..-++++
T Consensus 172 ~e~a~~aY~~A~~iA~~~----L~pThPirLGL-aLNfSVFyYEIln~p~~Ac~LAk~AF 226 (261)
T 3ubw_A 172 AENSLVAYKAASDIAMTE----LPPTHPIRLGL-ALNFSVFYYEILNSPDRACRLAKAAF 226 (261)
T ss_dssp HHHHHHHHHHHHHHHHHH----SCTTCHHHHHH-HHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh----CCCCCcHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 367788888888775432 12556655233 33333 33344677777776655543
No 337
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=22.20 E-value=54 Score=24.57 Aligned_cols=48 Identities=13% Similarity=0.081 Sum_probs=36.1
Q ss_pred CCCcccCCCCCCCccccccCCCCCcCCChHhHHHHHHcCChHHHHHHHHHh
Q 017532 4 SPPVCQNPSRFTDPLTNAFGSLNDLVPDLASLQDLATRGSWRTIIDNVSRA 54 (370)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~Ai~~~~~~ 54 (370)
|.||.+||+...-|-+..+ -.-|.+...++.-++.|.|...-.....+
T Consensus 41 s~~F~~pv~~~~~PdY~~i---Ik~PMdL~tI~~kL~~~~Y~s~~ef~~Dv 88 (130)
T 3k2j_A 41 AEPFYHLPSKKKYPDYYQQ---IKMPISLQQIRTKLKNQEYETLDHLECDL 88 (130)
T ss_dssp TGGGSSCCCTTTCHHHHHH---CSSCCCHHHHHHHHHTTCCSSHHHHHHHH
T ss_pred cHhhcCCCChhhCccHHHH---cCCCCCHHHHHHHHhcCCCCCHHHHHHHH
Confidence 7799999987766654444 34567889999999999998877665553
No 338
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=22.13 E-value=3.4e+02 Score=22.55 Aligned_cols=46 Identities=9% Similarity=0.105 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhh-----CCCCHH---HHHHHHHHHHH-hCCHHHHHHHHHHHHH
Q 017532 273 VSAVREYEECIER-----DYNDIV---AINNKALCLMY-LRDLSDSIKVLENALE 318 (370)
Q Consensus 273 ~eA~~~~~~~l~~-----~p~~~~---~~~nla~~~~~-~g~~~~A~~~l~~al~ 318 (370)
+.|...|+++.++ .|.+|. ...|.++-|+. .|+.++|.....+++.
T Consensus 147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4677788888754 576763 44566665555 7999999988877754
No 339
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=22.09 E-value=1.6e+02 Score=18.58 Aligned_cols=43 Identities=9% Similarity=-0.086 Sum_probs=19.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 017532 186 SSKEYNVCFDLMNESIGRGNGLDPILVSKLGFIQMQVGDLEGAK 229 (370)
Q Consensus 186 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 229 (370)
.....++|..+-+-+-.... .....-......+..+|+|++|.
T Consensus 18 G~HcH~EA~tIA~~L~~~~~-~eE~v~mIr~~SLmNrG~Yq~Al 60 (61)
T 3ph0_C 18 GHHCHQEAASIADWLAQEEC-MAECVTLIRLSSLMNQGDYQRAL 60 (61)
T ss_dssp TTTCHHHHHHHHHHHHTSST-THHHHHHHHHHHHHHC-------
T ss_pred cchHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHccchHhHhh
Confidence 34566677666665544443 33333344455667778877764
No 340
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=21.51 E-value=1.2e+02 Score=24.77 Aligned_cols=36 Identities=6% Similarity=0.075 Sum_probs=22.0
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 017532 259 SRNKALIYLVGKDYVSAVREYEECIERDYNDIVAIN 294 (370)
Q Consensus 259 ~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~ 294 (370)
....-.++++.|.|++|.+.|++....++.+.....
T Consensus 120 k~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~ 155 (211)
T 3bqo_A 120 KIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKS 155 (211)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHH
Confidence 333456788899999999999988776655444333
No 341
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=21.18 E-value=1e+02 Score=22.20 Aligned_cols=55 Identities=13% Similarity=-0.200 Sum_probs=39.4
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 017532 259 SRNKALIYLVGKDYVSAVREYEECIERDYNDIVAINNKALCLMYLRDLSDSIKVLENALE 318 (370)
Q Consensus 259 ~~~~g~~~~~~g~~~eA~~~~~~~l~~~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~ 318 (370)
.+.+...++.+|+|++|....+.. + .+..--.+|.|--+.|-.+++..-+.++-.
T Consensus 42 ~lIR~sSLmNrG~Yq~Al~l~~~~----c-~pdlepw~ALce~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 42 RLIRISSLANQGRYQEALAFAHGN----P-WPALEPWFALCEWHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp HHHHHHHHHHTTCHHHHHGGGTTC----C-CGGGHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcchhHHHHHHhcCCC----C-CchHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 344667788999999997665433 2 445555678888999999998888855443
No 342
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=20.77 E-value=1.2e+02 Score=28.32 Aligned_cols=30 Identities=17% Similarity=0.144 Sum_probs=26.1
Q ss_pred HHHHHhHHHHHHHcCCHHHHHHHHHHHHhh
Q 017532 256 NLVSRNKALIYLVGKDYVSAVREYEECIER 285 (370)
Q Consensus 256 ~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~ 285 (370)
..++..+|.+|+.+|+|++|++..++++..
T Consensus 202 ~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 202 WAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 556677999999999999999999999864
No 343
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=20.48 E-value=3.8e+02 Score=22.50 Aligned_cols=55 Identities=13% Similarity=0.106 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHH
Q 017532 225 LEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECI 283 (370)
Q Consensus 225 ~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l 283 (370)
.+.|...|++|..+.... -.+.+|-..+.++.---+.|-..++.++|+..-++++
T Consensus 147 ~~~a~~aY~~A~~iA~~~----L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Af 201 (248)
T 3uzd_A 147 VESSEKAYSEAHEISKEH----MQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAF 201 (248)
T ss_dssp HHHHHHHHHHHHHHHHHH----SCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh----CCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 367788888888775432 1245665523333222233444677777766655543
No 344
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=20.09 E-value=4.3e+02 Score=22.97 Aligned_cols=27 Identities=11% Similarity=0.223 Sum_probs=20.2
Q ss_pred cCCChHhHHHHHHcCChHHHHHHHHHh
Q 017532 28 LVPDLASLQDLATRGSWRTIIDNVSRA 54 (370)
Q Consensus 28 ~~~~~~~l~~l~~~g~~~~Ai~~~~~~ 54 (370)
|......++..|..|+|=+|..+++..
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl 39 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTI 39 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHH
Confidence 444556888899999998888776553
No 345
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=20.03 E-value=1.9e+02 Score=26.66 Aligned_cols=79 Identities=14% Similarity=0.125 Sum_probs=50.5
Q ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHHhhcCCccCCccchHHHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHhh----
Q 017532 213 SKLGFIQMQVG---DLEGAKKSFNRVEEMLNEGKFEDGLLSEVEFRNLVSRNKALIYLVGKDYVSAVREYEECIER---- 285 (370)
Q Consensus 213 ~~lg~~~~~~g---~~~~A~~~~~~a~~l~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~g~~~eA~~~~~~~l~~---- 285 (370)
..|-+++..+| +|..|+-.+-...++.+... .| .++..|.+++..
T Consensus 261 q~LLWlLyd~GhL~rYPmALgnLgDLEe~~pt~g-------r~---------------------~~~~L~~~AI~sa~~~ 312 (550)
T 3u84_A 261 QKLLWLLYDLGHLERYPMALGNLADLEELEPTPG-------RP---------------------DPLTLYHKGIASAKTY 312 (550)
T ss_dssp HHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTT-------CC---------------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchhhCchhhcchhhHhhcCCCCC-------CC---------------------CHHHHHHHHHHHHHHH
Confidence 44455555555 45667777777666655421 11 133444444433
Q ss_pred -CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 017532 286 -DYNDIVAINNKALCLMYLRDLSDSIKVLENALER 319 (370)
Q Consensus 286 -~p~~~~~~~nla~~~~~~g~~~~A~~~l~~al~~ 319 (370)
+..+...|..+|-.+++.+++.+|+..+..+-..
T Consensus 313 Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~V 347 (550)
T 3u84_A 313 YRDEHIYPYMYLAGYHCRNRNVREALQAWADTATV 347 (550)
T ss_dssp STTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hccCCccceeecchhhhhcchHHHHHHHHHHHHHH
Confidence 3455667788899999999999999999987554
No 346
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=20.01 E-value=2.3e+02 Score=19.71 Aligned_cols=56 Identities=16% Similarity=0.062 Sum_probs=41.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHH--HhCCHHHHHHHHHHHHHh
Q 017532 262 KALIYLVGKDYVSAVREYEECIERDYNDI----VAINNKALCLM--YLRDLSDSIKVLENALER 319 (370)
Q Consensus 262 ~g~~~~~~g~~~eA~~~~~~~l~~~p~~~----~~~~nla~~~~--~~g~~~~A~~~l~~al~~ 319 (370)
.|..++..|+|=+|-+.++..-...|... ..+..+|+++. ..|+. |...+.+++..
T Consensus 7 ~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~ 68 (94)
T 2cwy_A 7 EVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEAR 68 (94)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHH
Confidence 67888899999999999999987775432 34555665554 46777 99999998763
Done!