Query 017533
Match_columns 370
No_of_seqs 233 out of 1187
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 09:25:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017533.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017533hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03193 beta-1,3-galactosyltr 100.0 8.4E-98 2E-102 740.5 30.6 353 6-368 11-374 (408)
2 KOG2288 Galactosyltransferases 100.0 5.6E-66 1.2E-70 481.1 16.2 231 130-368 8-239 (274)
3 PLN03133 beta-1,3-galactosyltr 100.0 4.6E-49 1E-53 411.6 24.2 213 128-350 380-600 (636)
4 KOG2287 Galactosyltransferases 100.0 6.7E-47 1.4E-51 375.8 22.7 207 132-347 94-304 (349)
5 PF01762 Galactosyl_T: Galacto 100.0 5.9E-47 1.3E-51 346.0 17.0 191 147-345 1-195 (195)
6 PTZ00210 UDP-GlcNAc-dependent 100.0 1.1E-30 2.5E-35 257.3 18.0 191 128-337 75-306 (382)
7 PF13334 DUF4094: Domain of un 100.0 3.4E-29 7.3E-34 205.2 5.6 91 12-111 1-95 (95)
8 PF02434 Fringe: Fringe-like; 99.8 2.3E-18 5E-23 164.4 12.4 192 134-352 7-210 (252)
9 KOG2246 Galactosyltransferases 99.6 1.2E-14 2.6E-19 145.5 12.3 170 128-344 86-268 (364)
10 PLN03153 hypothetical protein; 99.0 6.8E-09 1.5E-13 107.1 15.6 184 130-349 119-317 (537)
11 KOG3708 Uncharacterized conser 97.6 0.00015 3.2E-09 75.0 6.6 157 134-343 27-193 (681)
12 PF13641 Glyco_tranf_2_3: Glyc 96.1 0.14 3E-06 46.5 13.2 126 221-352 77-212 (228)
13 TIGR03472 HpnI hopanoid biosyn 95.4 0.41 8.9E-06 48.1 14.2 164 171-343 70-246 (373)
14 cd02525 Succinoglycan_BP_ExoA 95.0 1.8 3.8E-05 39.3 16.1 168 170-349 30-207 (249)
15 cd02510 pp-GalNAc-T pp-GalNAc- 94.9 1.8 4E-05 41.5 16.6 129 221-349 74-224 (299)
16 cd04192 GT_2_like_e Subfamily 94.8 0.97 2.1E-05 40.5 13.9 169 172-347 29-206 (229)
17 PF01755 Glyco_transf_25: Glyc 94.4 1.1 2.4E-05 40.5 13.1 93 137-246 4-101 (200)
18 cd02520 Glucosylceramide_synth 93.9 1.5 3.2E-05 39.3 12.7 140 172-347 31-174 (196)
19 PRK11204 N-glycosyltransferase 93.8 3.4 7.3E-05 41.8 16.7 153 189-352 98-262 (420)
20 TIGR03469 HonB hopene-associat 93.6 2.9 6.4E-05 42.1 15.7 169 171-347 70-259 (384)
21 cd06439 CESA_like_1 CESA_like_ 93.2 2.8 6.1E-05 38.5 13.9 125 221-351 100-230 (251)
22 PF13506 Glyco_transf_21: Glyc 93.1 0.18 3.9E-06 45.6 5.4 128 215-345 16-147 (175)
23 PF00535 Glycos_transf_2: Glyc 92.6 2.3 4.9E-05 35.4 11.3 135 171-313 27-168 (169)
24 cd06421 CESA_CelA_like CESA_Ce 92.6 0.97 2.1E-05 40.8 9.6 124 222-351 76-212 (234)
25 cd04185 GT_2_like_b Subfamily 92.4 6.2 0.00013 34.9 14.4 103 219-351 69-174 (202)
26 PF13632 Glyco_trans_2_3: Glyc 92.3 0.6 1.3E-05 41.5 7.7 117 233-353 1-127 (193)
27 cd04186 GT_2_like_c Subfamily 91.7 6.1 0.00013 33.0 12.9 93 224-348 68-163 (166)
28 PRK14583 hmsR N-glycosyltransf 90.8 17 0.00037 37.3 17.5 162 171-345 104-276 (444)
29 COG1215 Glycosyltransferases, 88.8 18 0.00038 36.3 15.5 173 172-355 85-269 (439)
30 cd02526 GT2_RfbF_like RfbF is 88.5 18 0.00039 32.7 14.1 150 199-351 46-205 (237)
31 cd04195 GT2_AmsE_like GT2_AmsE 88.4 11 0.00024 33.1 12.3 117 221-346 71-197 (201)
32 cd04196 GT_2_like_d Subfamily 88.3 11 0.00024 33.2 12.3 117 224-345 73-198 (214)
33 cd04187 DPM1_like_bac Bacteria 87.6 6.4 0.00014 34.3 10.1 133 171-315 29-164 (181)
34 cd06435 CESA_NdvC_like NdvC_li 87.5 17 0.00038 32.9 13.4 126 221-353 73-211 (236)
35 cd06423 CESA_like CESA_like is 87.4 5.6 0.00012 32.8 9.3 95 220-314 68-170 (180)
36 cd06532 Glyco_transf_25 Glycos 85.3 8 0.00017 32.8 9.3 116 138-319 3-119 (128)
37 cd06427 CESA_like_2 CESA_like_ 85.3 22 0.00047 32.8 12.9 122 220-344 74-206 (241)
38 TIGR03111 glyc2_xrt_Gpos1 puta 84.8 39 0.00086 34.7 15.7 127 220-349 121-266 (439)
39 COG1216 Predicted glycosyltran 84.0 7.6 0.00016 37.7 9.6 147 199-349 55-219 (305)
40 cd06420 GT2_Chondriotin_Pol_N 82.6 9.6 0.00021 32.8 8.9 101 221-342 70-172 (182)
41 cd06433 GT_2_WfgS_like WfgS an 81.9 9.2 0.0002 33.0 8.5 119 220-345 65-189 (202)
42 cd04179 DPM_DPG-synthase_like 81.2 13 0.00028 32.0 9.2 136 171-314 28-167 (185)
43 cd04184 GT2_RfbC_Mx_like Myxoc 81.0 37 0.00081 29.6 16.3 118 220-344 73-195 (202)
44 cd06437 CESA_CaSu_A2 Cellulose 77.6 55 0.0012 29.6 15.9 123 221-349 78-212 (232)
45 TIGR01556 rhamnosyltran L-rham 76.8 14 0.0003 35.0 8.6 127 221-350 65-201 (281)
46 cd00761 Glyco_tranf_GTA_type G 76.3 33 0.00072 27.3 9.7 36 220-255 67-102 (156)
47 cd06442 DPM1_like DPM1_like re 73.7 41 0.00088 29.9 10.4 92 222-314 70-167 (224)
48 cd02514 GT13_GLCNAC-TI GT13_GL 73.2 13 0.00028 37.5 7.5 84 220-313 87-174 (334)
49 TIGR03030 CelA cellulose synth 70.9 1.2E+02 0.0026 33.5 15.1 132 213-348 212-356 (713)
50 PF04646 DUF604: Protein of un 70.5 6.6 0.00014 38.0 4.6 51 299-349 12-66 (255)
51 cd06438 EpsO_like EpsO protein 70.1 26 0.00056 30.7 8.1 80 229-312 80-169 (183)
52 cd04190 Chitin_synth_C C-termi 69.4 8.4 0.00018 36.0 5.0 119 229-347 72-219 (244)
53 cd04188 DPG_synthase DPG_synth 68.6 86 0.0019 27.9 11.5 89 170-266 29-119 (211)
54 PRK10714 undecaprenyl phosphat 68.5 1E+02 0.0022 30.4 12.8 134 171-315 38-174 (325)
55 cd02522 GT_2_like_a GT_2_like_ 66.0 64 0.0014 28.6 9.9 105 222-338 64-173 (221)
56 PF10111 Glyco_tranf_2_2: Glyc 64.5 1.4E+02 0.0029 28.6 14.5 164 169-340 32-210 (281)
57 cd06434 GT2_HAS Hyaluronan syn 64.3 73 0.0016 28.6 10.1 167 172-350 29-213 (235)
58 cd04191 Glucan_BSP_ModH Glucan 61.9 1.5E+02 0.0032 28.3 15.1 127 213-347 77-228 (254)
59 PLN02726 dolichyl-phosphate be 60.3 1.4E+02 0.003 27.4 16.6 156 171-343 40-211 (243)
60 PRK14716 bacteriophage N4 adso 56.9 2.7E+02 0.0058 29.7 14.8 112 230-345 158-284 (504)
61 PF03071 GNT-I: GNT-I family; 50.3 1.3E+02 0.0029 31.4 10.1 92 217-317 174-273 (434)
62 COG4092 Predicted glycosyltran 49.9 75 0.0016 31.4 7.7 81 168-253 35-117 (346)
63 PHA01631 hypothetical protein 48.5 47 0.001 30.4 5.7 92 198-315 38-132 (176)
64 PRK11498 bcsA cellulose syntha 43.9 3.6E+02 0.0077 30.8 13.0 123 216-344 326-463 (852)
65 smart00786 SHR3_chaperone ER m 38.9 26 0.00055 32.7 2.6 29 12-40 6-40 (196)
66 PF08229 SHR3_chaperone: ER me 36.6 20 0.00044 33.4 1.6 30 11-40 5-40 (196)
67 PRK05454 glucosyltransferase M 36.0 4E+02 0.0087 29.6 11.7 198 130-345 121-351 (691)
68 PF11119 DUF2633: Protein of u 33.0 48 0.001 25.1 2.8 28 1-31 1-28 (59)
69 PF04666 Glyco_transf_54: N-Ac 32.5 2E+02 0.0044 28.5 7.9 22 230-251 169-190 (297)
70 PLN03181 glycosyltransferase; 31.8 2.5E+02 0.0055 29.4 8.6 93 149-244 108-212 (453)
71 PF06072 Herpes_US9: Alphaherp 29.0 56 0.0012 24.8 2.6 17 16-32 42-58 (60)
72 PRK10018 putative glycosyl tra 27.6 5.7E+02 0.012 24.7 11.6 35 221-255 76-110 (279)
73 cd06913 beta3GnTL1_like Beta 1 26.3 4.6E+02 0.01 23.2 12.1 126 221-348 75-207 (219)
74 PF03452 Anp1: Anp1; InterPro 25.0 3.7E+02 0.008 26.4 8.2 97 169-266 54-181 (269)
75 PLN03182 xyloglucan 6-xylosylt 23.5 4.7E+02 0.01 27.4 8.8 94 149-243 105-210 (429)
76 PF03742 PetN: PetN ; InterPr 23.4 85 0.0018 20.4 2.3 23 11-33 4-26 (29)
77 PF09964 DUF2198: Uncharacteri 22.0 63 0.0014 25.6 1.8 22 13-34 46-67 (74)
No 1
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=8.4e-98 Score=740.53 Aligned_cols=353 Identities=63% Similarity=1.039 Sum_probs=326.1
Q ss_pred CCcccccchhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCccccccccchhhcccccchhc-------cCCchHHHHHHHh
Q 017533 6 STTTIISTKWIPFVCLFCFALGILFSNLTWNPPESDGRPSLNVRRREQQVAVASTDCAKK-------AFQDQDVAKEVLK 78 (370)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 78 (370)
++|+.||+||+++||++|||+|+|||||||..||+++ +..++.+++++++++++||+.+ +++++|+|+||++
T Consensus 11 ~~~~~~~~~~~~~~~~~~f~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ 89 (408)
T PLN03193 11 SSRSVVSRKWTLLLCLGCFCAGMLFTDRMWTIPESKG-ISRTTVTEAERLKLVSEGCDPKTLYQKEVKRDSKDIIGEVSK 89 (408)
T ss_pred cccccccHHHHHHHHHHHHHHHHhhccccccCCcccc-ccccccchhhhhhhhccccccccccccccccchhHHHHHHhh
Confidence 4588999999999999999999999999999999887 5566668899999999999853 3489999999999
Q ss_pred hhcccccCCcccchhhhhhHHhhhhhhcccccCCCCCCCCCcccc----CCCCCCCCCeEEEEEEECCCCCHHHHHHHHH
Q 017533 79 TRGAIHDGSVESDRTLDKTIGQLQMELAASRSGREMPGLESSAAN----ASTNSRRPKVFVVIGINTAFSSRKRRDSVRD 154 (370)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~llI~V~S~~~~~~rR~aIR~ 154 (370)
||++|+ +|||+|+.||||||+|++.++.. +++.|.+ ......++++++||+|+|+|+|++||++||+
T Consensus 90 t~~~~~--------~~~~~~~~le~el~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~LvIgI~Sap~~~~RR~AIR~ 160 (408)
T PLN03193 90 THNAIQ--------TLDKTISNLEMELAAARAAQESI-LNGSPISEDLKKTQSSGKRRYLMVVGINTAFSSRKRRDSVRA 160 (408)
T ss_pred HHHHHH--------HHhhhhhHHhHHHHHHHhhhhhh-ccCCCccccccccCCCCcceEEEEEEEeCCCCCHHHHHHHHH
Confidence 999999 99999999999999999977654 4554543 1234567789999999999999999999999
Q ss_pred HhccCchhhHhhhccCceEEEEEeecCCCCChhHHHHHHHHHhhCCCEEEeccccccccchhHHHHHHHHHHhcCCceEE
Q 017533 155 TWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFY 234 (370)
Q Consensus 155 TW~~~~~~l~~l~~~~~i~v~FVvG~s~~~~~~~~~~I~~E~~~~~DIL~ld~~Dsy~nLt~Kt~~~~~wa~~~~~a~F~ 234 (370)
|||++++.+.+++.+.+|+++||+|++.++++.++++|++|+++|||||++||+|+|+|||.||+++|+||.++|+++||
T Consensus 161 TWg~~~~~~~kle~~~gv~vrFVIG~s~~~~~~ldr~Le~Ea~~ygDIL~lDfvDsY~NLT~KTl~~f~wA~~~~dAkF~ 240 (408)
T PLN03193 161 TWMPQGEKRKKLEEEKGIIIRFVIGHSATSGGILDRAIEAEDRKHGDFLRLDHVEGYLELSAKTKTYFATAVAMWDADFY 240 (408)
T ss_pred HHcCCcccccccccCCcEEEEEEeecCCCcchHHHHHHHHHHHHhCCEEEEecccccccchHHHHHHHHHHHHcCCCeEE
Confidence 99999877777777899999999999987678899999999999999999999999999999999999999999999999
Q ss_pred EEecCceeecHHHHHHHHhhcCCCCceEEEEeecCcccccCCCccccCCccccCCCCCccCccccCCeeeecHHHHHHHH
Q 017533 235 VKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKSGPVLSQKNVKYHEPEYWKFGEEGNKYFRHATGQIYAISKDLATYIS 314 (370)
Q Consensus 235 lKvDDDvfVnl~~L~~~L~~~~~~~~lYiG~~~~~pv~rd~~~K~~~pe~w~f~y~~~~Yp~Y~~G~~YvlSrdla~~I~ 314 (370)
+|+|||+|||+++|+.+|..++.++++|+|||+++|++.+++.|||+|++|+|+++++.|||||+|++||||+|+|++|+
T Consensus 241 mK~DDDvfVnv~~L~~~L~~~~~~~rlYiG~m~~gPvr~~~~~ky~epe~w~~~~~~~~YPpyAsG~gYVlS~DLa~~I~ 320 (408)
T PLN03193 241 VKVDDDVHVNIATLGETLVRHRKKPRVYIGCMKSGPVLSQKGVRYHEPEYWKFGENGNKYFRHATGQLYAISKDLASYIS 320 (408)
T ss_pred EEcCCCceEcHHHHHHHHHhcCCCCCEEEEecccCccccCCCCcCcCcccccccCccccCCCCCCcceEEehHHHHHHHH
Confidence 99999999999999999998877889999999989987778899999999999999999999999999999999999999
Q ss_pred HhCCCcCCCCcchHHHHHHHhcCCCeEecCCCceeCCCCCcccccCcCCccccc
Q 017533 315 INQPILHKFANEDVSLGSWFIGLEVEHIDDRNMCCQTPPGNVSKKDDLLFCLLL 368 (370)
Q Consensus 315 ~~~~~l~~~~~EDV~lG~~l~gL~v~~id~~~fc~~~~~dce~k~~~~~~c~~~ 368 (370)
.++..++.|++|||++|+|+.||+|+|+|+++|||++||+||||+++|++|++.
T Consensus 321 ~n~~~L~~y~~EDV~vG~Wl~~L~V~~vdd~~fcc~~~~~C~~~~~~~~~c~~~ 374 (408)
T PLN03193 321 INQHVLHKYANEDVSLGSWFIGLDVEHIDDRRLCCGTPPDCEWKAQAGNICVAS 374 (408)
T ss_pred hChhhhcccCcchhhhhhHhccCCceeeecccccCCCCccccccccCCCeeEEE
Confidence 999999999999999999999999999999999999999999999999999986
No 2
>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.6e-66 Score=481.10 Aligned_cols=231 Identities=68% Similarity=1.114 Sum_probs=224.2
Q ss_pred CCCeEEEEEEECCCCCHHHHHHHHHHhccCchhhHhhhccCceEEEEEeecCCCCChhHHHHHHHHHhhCCCEEEec-cc
Q 017533 130 RPKVFVVIGINTAFSSRKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLE-HI 208 (370)
Q Consensus 130 ~~~~~llI~V~S~~~~~~rR~aIR~TW~~~~~~l~~l~~~~~i~v~FVvG~s~~~~~~~~~~I~~E~~~~~DIL~ld-~~ 208 (370)
+++++++|+|.|+|++.+||+++|+|||++++.+++++++++|.++||||+ ++.+++.+++|++|+++|+|+|.+| ++
T Consensus 8 ~~k~l~vigI~T~f~s~~RR~~vR~TWmp~~~~l~rle~e~gv~~RFvIG~-~~~g~~~~r~ie~E~~~~~DfllLd~h~ 86 (274)
T KOG2288|consen 8 RRKVLLVIGINTAFSSRKRRDSVRQTWMPSGEGLKRLEEEKGVIIRFVIGT-ATLGASLDRALEEENAQHGDFLLLDRHE 86 (274)
T ss_pred ccceEEEEEeecccchhhhHHHHHHhhcCCccchhhhccccceEEEEEecc-CCccHHHHHHHHHHHHhcCCeEeechhH
Confidence 779999999999999999999999999999999999999999999999999 4468999999999999999999999 99
Q ss_pred cccccchhHHHHHHHHHHhcCCceEEEEecCceeecHHHHHHHHhhcCCCCceEEEEeecCcccccCCCccccCCccccC
Q 017533 209 EGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKSGPVLSQKNVKYHEPEYWKFG 288 (370)
Q Consensus 209 Dsy~nLt~Kt~~~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~~lYiG~~~~~pv~rd~~~K~~~pe~w~f~ 288 (370)
|+|++|+.||+.+|.+|+++|+++||+|+|||+|||++.|...|++++.+|++|||||++|||+.++++|||+|+ |+|+
T Consensus 87 E~Y~~Ls~Kt~~~f~~A~~~~daeFyvKvDDDv~v~l~~L~~~la~~r~~pr~YiGcmksg~v~~~~~~kw~Epe-Wkfg 165 (274)
T KOG2288|consen 87 EAYEELSAKTKAFFSAAVAHWDAEFYVKVDDDVYVRLARLGTLLARERSHPRLYIGCMKSGPVLTQPGGKWYEPE-WKFG 165 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHhccceEEEEccccceecHHHHHHHHHhhccCCceEEEEecCCccccCCCCcccChh-hhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CCCCccCccccCCeeeecHHHHHHHHHhCCCcCCCCcchHHHHHHHhcCCCeEecCCCceeCCCCCcccccCcCCccccc
Q 017533 289 EEGNKYFRHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWFIGLEVEHIDDRNMCCQTPPGNVSKKDDLLFCLLL 368 (370)
Q Consensus 289 y~~~~Yp~Y~~G~~YvlSrdla~~I~~~~~~l~~~~~EDV~lG~~l~gL~v~~id~~~fc~~~~~dce~k~~~~~~c~~~ 368 (370)
+.++ |+||+.|++|+||++||++|++|+..++.|.+|||++|.|++||+|+|+||+++||+++ |++++++|++.
T Consensus 166 ~~g~-YfrhA~G~~YvlS~dLa~yi~in~~lL~~y~nEDVSlGaW~~gldV~h~dd~rlC~~~~-----~~~~~~~~~~~ 239 (274)
T KOG2288|consen 166 DNGN-YFRHATGGGYVLSKDLATYISINRQLLHKYANEDVSLGAWMIGLDVEHVDDPRLCCSTP-----KALAGMVCAAS 239 (274)
T ss_pred cccc-cchhccCceEEeeHHHHHHHHHhHHHHHhhccCCcccceeeeeeeeeEecCCcccccch-----hhhccceeeee
Confidence 8877 99999999999999999999999999999999999999999999999999999999886 89999999875
No 3
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=4.6e-49 Score=411.57 Aligned_cols=213 Identities=23% Similarity=0.351 Sum_probs=191.6
Q ss_pred CCCCCeEEEEEEECCCCCHHHHHHHHHHhccCchhhHhhhccCceEEEEEeecCCCCChhHHHHHHHHHhhCCCEEEecc
Q 017533 128 SRRPKVFVVIGINTAFSSRKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEH 207 (370)
Q Consensus 128 ~~~~~~~llI~V~S~~~~~~rR~aIR~TW~~~~~~l~~l~~~~~i~v~FVvG~s~~~~~~~~~~I~~E~~~~~DIL~ld~ 207 (370)
.+.++++|||+|+|+|+|++||++||+|||+... ..+..++++|++|.+. ++.++.+|.+|+++|||||++||
T Consensus 380 ~~~~~~~LlI~V~Sap~nf~rR~AIR~TWg~~~~-----~~~~~v~~rFvVG~s~--n~~l~~~L~~Ea~~ygDIIq~dF 452 (636)
T PLN03133 380 SPKKPLDLFIGVFSTANNFKRRMAVRRTWMQYDA-----VRSGAVAVRFFVGLHK--NQMVNEELWNEARTYGDIQLMPF 452 (636)
T ss_pred CCCCceEEEEEEeCCcccHHHHHHHHHhhccccc-----cCCCceEEEEEEecCC--cHHHHHHHHHHHHHcCCeEEEee
Confidence 3456799999999999999999999999998642 2345689999999986 46789999999999999999999
Q ss_pred ccccccchhHHHHHHHHHHhcCCceEEEEecCceeecHHHHHHHHhhcCCCCceEEEEee-cCcccccCCCccccCCccc
Q 017533 208 IEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMK-SGPVLSQKNVKYHEPEYWK 286 (370)
Q Consensus 208 ~Dsy~nLt~Kt~~~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~~lYiG~~~-~~pv~rd~~~K~~~pe~w~ 286 (370)
+|+|+|||+||++++.|+..|++++|++|+|||+|||+++|+.+|......+++|+|++. ...|+|++.+|||+|.+
T Consensus 453 ~DsY~NLTlKtl~~~~wa~~c~~akFilK~DDDvFVnv~~Ll~~L~~~~~~~~Ly~G~v~~~~~PiRd~~sKWYVs~~-- 530 (636)
T PLN03133 453 VDYYSLITWKTLAICIFGTEVVSAKYVMKTDDDAFVRVDEVLASLKRTNVSHGLLYGLINSDSQPHRNPDSKWYISPE-- 530 (636)
T ss_pred echhhhhHHHHHHHHHHHHhCCCceEEEEcCCceEEcHHHHHHHHHhcCCCCceEEEEeccCCCcccCCCCCCCCCHH--
Confidence 999999999999999999988999999999999999999999999877667789999986 45788999999999865
Q ss_pred cCCCCCccCccccCCeeeecHHHHHHHHHhC--CCcCCCCcchHHHHHHHh-----cCCCeEecCCCceeC
Q 017533 287 FGEEGNKYFRHATGQIYAISKDLATYISINQ--PILHKFANEDVSLGSWFI-----GLEVEHIDDRNMCCQ 350 (370)
Q Consensus 287 f~y~~~~Yp~Y~~G~~YvlSrdla~~I~~~~--~~l~~~~~EDV~lG~~l~-----gL~v~~id~~~fc~~ 350 (370)
.||++.|||||+|++||||+|+|++|+.++ ..++.|++||||+|+|+. |+.+.+.++.+||+.
T Consensus 531 -eyp~~~YPpYasG~gYVlS~Dla~~L~~~s~s~~l~~f~lEDVyvGi~l~~l~k~gl~v~~~~~~r~~~~ 600 (636)
T PLN03133 531 -EWPEETYPPWAHGPGYVVSRDIAKEVYKRHKEGRLKMFKLEDVAMGIWIAEMKKEGLEVKYENDGRIYNE 600 (636)
T ss_pred -HCCCCCCCCCCCcCEEEEcHHHHHHHHHhhhhcccCcCChhhHhHHHHHHHhcccCCCceeeCCCcccCC
Confidence 567899999999999999999999998764 589999999999999984 788999999999864
No 4
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.7e-47 Score=375.75 Aligned_cols=207 Identities=25% Similarity=0.349 Sum_probs=190.6
Q ss_pred CeEEEEEEECCCCCHHHHHHHHHHhccCchhhHhhhccCceEEEEEeecCCCCChhHHHHHHHHHhhCCCEEEecccccc
Q 017533 132 KVFVVIGINTAFSSRKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGY 211 (370)
Q Consensus 132 ~~~llI~V~S~~~~~~rR~aIR~TW~~~~~~l~~l~~~~~i~v~FVvG~s~~~~~~~~~~I~~E~~~~~DIL~ld~~Dsy 211 (370)
.++++++|.|++++++||++||+|||+... ..+..++++|++|.+++.+ .+++.|.+|++.|||||+.||.|+|
T Consensus 94 ~~~lLl~V~S~~~~farR~aiR~TW~~~~~-----v~~~~v~~~FLvG~~~~~~-~~~~~l~~Ea~~ygDIi~~df~Dty 167 (349)
T KOG2287|consen 94 PPELLLLVKSAPDNFARRNAIRKTWGNENN-----VRGGRVRVLFLVGLPSNED-KLNKLLADEARLYGDIIQVDFEDTY 167 (349)
T ss_pred CceEEEEEecCCCCHHHHHHHHHHhcCccc-----cCCCcEEEEEEecCCCcHH-HHHHHHHHHHHHhCCEEEEecccch
Confidence 489999999999999999999999999873 3577899999999987544 6689999999999999999999999
Q ss_pred ccchhHHHHHHHHHHh-cCCceEEEEecCceeecHHHHHHHHhhc-CCCCceEEEEee-cCcccccCCCccccCCccccC
Q 017533 212 HELSAKTKIFFSTAVA-KWDADFYVKVDDDVHVNLGMLATTLSRH-RSKPRVYIGCMK-SGPVLSQKNVKYHEPEYWKFG 288 (370)
Q Consensus 212 ~nLt~Kt~~~~~wa~~-~~~a~F~lKvDDDvfVnl~~L~~~L~~~-~~~~~lYiG~~~-~~pv~rd~~~K~~~pe~w~f~ 288 (370)
.|||+||++++.|+.+ |++++|++|+|||+|||+++|..+|..+ .+.+++|.|.+. ..+|+|++.+|||+|+. .
T Consensus 168 ~nltlKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G~v~~~~~p~R~~~~KwyVp~~---~ 244 (349)
T KOG2287|consen 168 FNLTLKTLAILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYGRVIQNAPPIRDKTSKWYVPES---E 244 (349)
T ss_pred hchHHHHHHHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhccCCCCcceEEEeecccCCCCCCCCCCCccCHH---H
Confidence 9999999999999998 5789999999999999999999999998 778899999976 46889999999999987 7
Q ss_pred CCCCccCccccCCeeeecHHHHHHHHHhCCCcCCCCcchHHHHHHHhcC-CCeEecCCCc
Q 017533 289 EEGNKYFRHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWFIGL-EVEHIDDRNM 347 (370)
Q Consensus 289 y~~~~Yp~Y~~G~~YvlSrdla~~I~~~~~~l~~~~~EDV~lG~~l~gL-~v~~id~~~f 347 (370)
|+.+.||+||+|++|+||+++|+.|+.++..++.++.|||++|+|+..+ ++.+++...|
T Consensus 245 y~~~~YP~Y~sG~gYvis~~~a~~l~~~s~~~~~~~iEDV~~g~~l~~~~gi~~~~~~~~ 304 (349)
T KOG2287|consen 245 YPCSVYPPYASGPGYVISGDAARRLLKASKHLKFFPIEDVFVGGCLAEDLGIKPVNHPGF 304 (349)
T ss_pred CCCCCCCCcCCCceeEecHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCcccCccc
Confidence 8889999999999999999999999999999999999999999999776 8888876653
No 5
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=100.00 E-value=5.9e-47 Score=346.00 Aligned_cols=191 Identities=29% Similarity=0.414 Sum_probs=172.5
Q ss_pred HHHHHHHHHhccCchhhHhhhccCceEEEEEeecCCCCChhHHHHHHHHHhhCCCEEEeccccccccchhHHHHHHHHHH
Q 017533 147 KRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAV 226 (370)
Q Consensus 147 ~rR~aIR~TW~~~~~~l~~l~~~~~i~v~FVvG~s~~~~~~~~~~I~~E~~~~~DIL~ld~~Dsy~nLt~Kt~~~~~wa~ 226 (370)
+||++||+||++... ....+++++||+|.+++.+..++..|.+|+++|+|||++||.|+|+|||+||+++++|+.
T Consensus 1 ~rR~~IR~TW~~~~~-----~~~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~~D~y~nlt~K~~~~~~w~~ 75 (195)
T PF01762_consen 1 ERRQAIRETWGNQRN-----FKGVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDFVDSYRNLTLKTLAGLKWAS 75 (195)
T ss_pred ChHHHHHHHHhcccc-----cCCCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeecccccchhhHHHHHHHHHHH
Confidence 589999999999863 245899999999999855678888999999999999999999999999999999999999
Q ss_pred hcC-CceEEEEecCceeecHHHHHHHHhhc---CCCCceEEEEeecCcccccCCCccccCCccccCCCCCccCccccCCe
Q 017533 227 AKW-DADFYVKVDDDVHVNLGMLATTLSRH---RSKPRVYIGCMKSGPVLSQKNVKYHEPEYWKFGEEGNKYFRHATGQI 302 (370)
Q Consensus 227 ~~~-~a~F~lKvDDDvfVnl~~L~~~L~~~---~~~~~lYiG~~~~~pv~rd~~~K~~~pe~w~f~y~~~~Yp~Y~~G~~ 302 (370)
++| +++|++|+|||+|||+++|.++|... .....+|.+++..+++++++.+|||+|+. .|+.+.|||||+|++
T Consensus 76 ~~c~~~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~~~kw~v~~~---~y~~~~yP~y~~G~~ 152 (195)
T PF01762_consen 76 KHCPNAKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIRDPSSKWYVSEE---EYPDDYYPPYCSGGG 152 (195)
T ss_pred hhCCchhheeecCcEEEEehHHhhhhhhhcccCccccccccccccCCccccccccCceeeee---ecccccCCCcCCCCe
Confidence 976 59999999999999999999999987 23345665567778899999999999976 567889999999999
Q ss_pred eeecHHHHHHHHHhCCCcCCCCcchHHHHHHHhcCCCeEecCC
Q 017533 303 YAISKDLATYISINQPILHKFANEDVSLGSWFIGLEVEHIDDR 345 (370)
Q Consensus 303 YvlSrdla~~I~~~~~~l~~~~~EDV~lG~~l~gL~v~~id~~ 345 (370)
|+||+++|+.|+.++..++.+++|||++|+|+.+++++++|++
T Consensus 153 yvls~~~v~~i~~~~~~~~~~~~eDv~iGi~~~~~~i~~~~~~ 195 (195)
T PF01762_consen 153 YVLSSDVVKRIYKASSHTPFFPLEDVFIGILAEKLGIKPIHDP 195 (195)
T ss_pred EEecHHHHHHHHHHhhcCCCCCchHHHHHHHHHHCCCCccCCC
Confidence 9999999999999999999999999999999999999999863
No 6
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=99.97 E-value=1.1e-30 Score=257.33 Aligned_cols=191 Identities=20% Similarity=0.308 Sum_probs=156.7
Q ss_pred CCCCCeEEEEEEECCCCC--HHHHHHHHHHhccCchhhHh-hhccCceEEEEEeecCCCCChhHHHHHHHHHhhCCCEEE
Q 017533 128 SRRPKVFVVIGINTAFSS--RKRRDSVRDTWMPQGEKLIQ-LEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLR 204 (370)
Q Consensus 128 ~~~~~~~llI~V~S~~~~--~~rR~aIR~TW~~~~~~l~~-l~~~~~i~v~FVvG~s~~~~~~~~~~I~~E~~~~~DIL~ 204 (370)
-.+++.++++||.|..++ +.||++.|+||........+ ..-...+.++|++|..++.+-+.+.++.+|+++|||||+
T Consensus 75 w~~~~~lv~~Gi~S~d~~~r~~rR~lqr~t~w~y~~va~~~n~ftg~~lv~y~l~~H~~~~~~~~~~L~eEA~~~~DIVi 154 (382)
T PTZ00210 75 WKAQRFLAVLGIPSVDNSERSRRRDLQRQTCWKYSGVATRSNNFSGSLLPLYLLAPHQSNSYLISHSLKEEAARTHDIIT 154 (382)
T ss_pred hccCCceEEEeccCCCchHHHHHHHHHHhhhhcchhhhhhccCCchhhhhhhhhccCCccchhhhHHHHHHHHHhCCEEE
Confidence 457788999999999988 89999999999987642211 111356678999999987677999999999999999999
Q ss_pred ecc------------------ccccccchhHHHHHHHHHHhcC-CceEEEEecCceeecHHHHHHHHhhcCCCCceEEEE
Q 017533 205 LEH------------------IEGYHELSAKTKIFFSTAVAKW-DADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGC 265 (370)
Q Consensus 205 ld~------------------~Dsy~nLt~Kt~~~~~wa~~~~-~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~~lYiG~ 265 (370)
+|| .|++.++|+||+++++||...+ +++|++|+|||+|||++.+++.|+.. +...+|+|.
T Consensus 155 lpf~d~~~tTnKkiG~~g~WG~e~e~~mT~KT~l~~~wA~~~cP~a~YImKgDDDvFVrVp~lL~~Lr~~-prr~LY~G~ 233 (382)
T PTZ00210 155 LPTNDVSPSTRKKIGENGNWGIEAEVAMSRKTYLWLRFALHMFPNVSYIVKGDDDIFIRVPKYLADLRVM-PRHGLYMGR 233 (382)
T ss_pred EecccCccccccccccCCcccchhhcchhHHHHHHHHHHHHhCCCCCeEEEcCCCeEeeHHHHHHHHhhC-CCCceEEEe
Confidence 999 6777889999999999999964 99999999999999999999999765 445699998
Q ss_pred eecC-cccccCCCccccCCccccCCCCCccCccccCCeeeecHHHHHHHHHhCCC--c---------------CCCCcch
Q 017533 266 MKSG-PVLSQKNVKYHEPEYWKFGEEGNKYFRHATGQIYAISKDLATYISINQPI--L---------------HKFANED 327 (370)
Q Consensus 266 ~~~~-pv~rd~~~K~~~pe~w~f~y~~~~Yp~Y~~G~~YvlSrdla~~I~~~~~~--l---------------~~~~~ED 327 (370)
+... .+. .+.+||||+|++|+||+|+|+.|+...+. + -.+.+||
T Consensus 234 v~~~~~p~------------------Rd~~PpY~~G~gYvLSrDVA~~Lvs~~pl~rL~~~pys~~~~~~y~~~~~~~ED 295 (382)
T PTZ00210 234 YNYYNRIW------------------RRNQLTYVNGYCITLSRDTAQAIISYKPLERLVNMPFSMWDYFDFLDLGMFYED 295 (382)
T ss_pred eCCCCccc------------------cCCCCCccccceeeccHHHHHHHHhhChHhHhhcCCCchHHHHHHHHhhcCchH
Confidence 6421 111 12479999999999999999999987543 1 2457999
Q ss_pred HHHHHHH-hcC
Q 017533 328 VSLGSWF-IGL 337 (370)
Q Consensus 328 V~lG~~l-~gL 337 (370)
+.+|.|+ .++
T Consensus 296 iMvG~vLr~~~ 306 (382)
T PTZ00210 296 VMVGMILREKV 306 (382)
T ss_pred HHHHHHHHHhc
Confidence 9999999 444
No 7
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=99.95 E-value=3.4e-29 Score=205.19 Aligned_cols=91 Identities=42% Similarity=0.705 Sum_probs=82.5
Q ss_pred cchhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCccc-cccccchhhcccccchhcc---CCchHHHHHHHhhhcccccCC
Q 017533 12 STKWIPFVCLFCFALGILFSNLTWNPPESDGRPSLN-VRRREQQVAVASTDCAKKA---FQDQDVAKEVLKTRGAIHDGS 87 (370)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 87 (370)
|+||+++||+||||+|+|||||||..||+.+ +.+. .+..+++++++++||++++ ++.+|+|+||+|||++||
T Consensus 1 S~kw~l~Lc~~SF~~G~lft~R~W~~pe~~~-~~~~~~~~~~~~l~l~s~~c~~k~~~~~~~~di~~eV~kTh~aIq--- 76 (95)
T PF13334_consen 1 SRKWVLLLCIASFCAGMLFTNRMWTVPESKE-ISRRSSQDAEERLQLVSEDCDPKKLKESDQRDIMGEVSKTHEAIQ--- 76 (95)
T ss_pred CchHHHHHHHHHHHHHHHHhcccccCCcccc-chhhhccccccccccccccccccccccCCccchhHHHHHHHHHHH---
Confidence 6799999999999999999999999999987 5443 4577899999999999654 788999999999999999
Q ss_pred cccchhhhhhHHhhhhhhcccccC
Q 017533 88 VESDRTLDKTIGQLQMELAASRSG 111 (370)
Q Consensus 88 ~~~~~~~~~~~~~l~~el~~~~~~ 111 (370)
+|||+||+||||||+||++
T Consensus 77 -----~LdKtIS~LEMELAaARa~ 95 (95)
T PF13334_consen 77 -----SLDKTISSLEMELAAARAE 95 (95)
T ss_pred -----HHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999973
No 8
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=99.77 E-value=2.3e-18 Score=164.39 Aligned_cols=192 Identities=19% Similarity=0.242 Sum_probs=98.8
Q ss_pred EEEEEEECCCCCH-HHHHHHHHHhccCchhhHhhhccCceEEEEEeecCCCCChhHHHHHHHHHhhCCCEEEeccccccc
Q 017533 134 FVVIGINTAFSSR-KRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYH 212 (370)
Q Consensus 134 ~llI~V~S~~~~~-~rR~aIR~TW~~~~~~l~~l~~~~~i~v~FVvG~s~~~~~~~~~~I~~E~~~~~DIL~ld~~Dsy~ 212 (370)
.++|+|+|++++. .|-.+|++||++.... . .|+....+ +..+..+ ...+++.-+...++.
T Consensus 7 dI~i~V~T~~k~h~tR~~~I~~TW~~~~~~---------~--~~ifsd~~------d~~l~~~--~~~~l~~~~~~~~~~ 67 (252)
T PF02434_consen 7 DIFIAVKTTKKFHKTRAPAIKQTWAKRCNK---------Q--TFIFSDAE------DPSLPTV--TGVHLVNPNCDAGHC 67 (252)
T ss_dssp GEEEEEE--GGGTTTTHHHHHHTGGGGSGG---------G--EEEEESS--------HHHHHH--HGGGEEE--------
T ss_pred cEEEEEEeCHHHHHHHHHHHHHHHHhhcCC---------c--eEEecCcc------ccccccc--cccccccCCCcchhh
Confidence 6899999999865 5668999999998741 1 24322221 2233333 223454444444443
Q ss_pred cchhHHHHHHHHHHh-cCCceEEEEecCceeecHHHHHHHHhhcCCCCceEEEEeec-CcccccCCCccccCCccccCCC
Q 017533 213 ELSAKTKIFFSTAVA-KWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKS-GPVLSQKNVKYHEPEYWKFGEE 290 (370)
Q Consensus 213 nLt~Kt~~~~~wa~~-~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~~lYiG~~~~-~pv~rd~~~K~~~pe~w~f~y~ 290 (370)
..+++.++.+.+... ..+++|++++|||+||++++|..+|..+++..++|+|+... .+...-.......+
T Consensus 68 ~~~~~~~~~~~y~~~~~~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG~~~~~~~~~~~~~~~~~~~-------- 139 (252)
T PF02434_consen 68 RKTLSCKMAYEYDHFLNSDKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIGRPSGDRPIEIIHRFNPNKS-------- 139 (252)
T ss_dssp -----HHHHHHHHHHHHHT-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE-EE------------------------
T ss_pred HHHHHHHHHHHHHhhhcCCceEEEEEeCCceecHHHHHHHHhhCCCccCEEeeeeccCccceeecccccccc--------
Confidence 334444444444222 35889999999999999999999999999999999998542 22211000000000
Q ss_pred CCccCccc-cCCeeeecHHHHHHHHH---hCCCcCCC----CcchHHHHHHHhc-CCCeEecCCCceeCCC
Q 017533 291 GNKYFRHA-TGQIYAISKDLATYISI---NQPILHKF----ANEDVSLGSWFIG-LEVEHIDDRNMCCQTP 352 (370)
Q Consensus 291 ~~~Yp~Y~-~G~~YvlSrdla~~I~~---~~~~l~~~----~~EDV~lG~~l~g-L~v~~id~~~fc~~~~ 352 (370)
...-..|+ +|+||+||+.++++|.. ........ ..||+.+|.|+.. |+|..+|...|+.-.+
T Consensus 140 ~~~~~~f~~GGaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~lgv~lt~s~~fhs~~~ 210 (252)
T PF02434_consen 140 KDSGFWFATGGAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENLLGVPLTHSPLFHSHLE 210 (252)
T ss_dssp ------EE-GGG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHTT---EEE-TT---SSS
T ss_pred CcCceEeeCCCeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhcCCcceeechhhcccCc
Confidence 11223455 57899999999999954 22222222 3899999999988 9999999999966443
No 9
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.58 E-value=1.2e-14 Score=145.53 Aligned_cols=170 Identities=22% Similarity=0.293 Sum_probs=130.4
Q ss_pred CCCCCeEEEEEEECCCCCHH-HHHHHHHHhccCchhhHhhhccCceEEEEEe---ecCCCCChhHHHHHHHHHhhCCCEE
Q 017533 128 SRRPKVFVVIGINTAFSSRK-RRDSVRDTWMPQGEKLIQLEREKGIIIRFMI---GHSATSNSILDKAIDSEDAQHKDFL 203 (370)
Q Consensus 128 ~~~~~~~llI~V~S~~~~~~-rR~aIR~TW~~~~~~l~~l~~~~~i~v~FVv---G~s~~~~~~~~~~I~~E~~~~~DIL 203 (370)
-..++..+++.|.|++.+.. |-+.+-+||++.++ +..|+- .+. ...+. .|
T Consensus 86 ~l~r~~~v~cwv~t~~~~~~~~~~~v~~TW~~rc~-----------~~~f~s~~~s~~--------------~~~f~-~v 139 (364)
T KOG2246|consen 86 WLSRSGRVLCWVLTSPMRHVTRADAVKETWLKRCD-----------KGIFFSPTLSKD--------------DSRFP-TV 139 (364)
T ss_pred ccCCCceEEEEEEecCcCceeehhhhhcccccccC-----------cceecCccCCCC--------------CCcCc-ee
Confidence 34677899999999988765 55799999999875 223443 222 11222 33
Q ss_pred EeccccccccchhHHHHHHHHHHhc--CCceEEEEecCceeecHHHHHHHHhhcCCCCceEEEEeecCcccccCCCcccc
Q 017533 204 RLEHIEGYHELSAKTKIFFSTAVAK--WDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKSGPVLSQKNVKYHE 281 (370)
Q Consensus 204 ~ld~~Dsy~nLt~Kt~~~~~wa~~~--~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~~lYiG~~~~~pv~rd~~~K~~~ 281 (370)
..+..|+|+++..||..+++++.++ -+++|++|+|||||+.+++|..+|..+++++.+|+|+... -|.
T Consensus 140 ~~~~~~g~~~~~~ktr~~~~yv~~~~~~~~dWf~~aDDDTy~i~eNLr~~L~~yDp~~p~YiG~~~~----------~~~ 209 (364)
T KOG2246|consen 140 YYNLPDGYRSLWRKTRIAFKYVYDHILKDYDWFLKADDDTYFIMENLRYVLSKYDPEKPVYLGYRSK----------SYF 209 (364)
T ss_pred eccCCcchHHHHHHHHHHHHHHHHhccCCCCeEEeccCCeEEeHHHHHHHHhhcCCCCcEEeccccc----------ccc
Confidence 6888999999999999999999865 4899999999999999999999999999999999998421 111
Q ss_pred CCccccCCCCCccCccccCCeeeecHHHHHHHHHh----CC-CcCCCC--cchHHHHHHHhcCCCeEecC
Q 017533 282 PEYWKFGEEGNKYFRHATGQIYAISKDLATYISIN----QP-ILHKFA--NEDVSLGSWFIGLEVEHIDD 344 (370)
Q Consensus 282 pe~w~f~y~~~~Yp~Y~~G~~YvlSrdla~~I~~~----~~-~l~~~~--~EDV~lG~~l~gL~v~~id~ 344 (370)
.+.|- -+|++|++|+.+.+.++.. .. ....+. .||+-+|.|+..+||...|+
T Consensus 210 ---------~~~y~--~g~ag~~ls~aa~~~la~~l~~~~~~C~~~~~~~~eD~~i~~Cl~~~GV~~~d~ 268 (364)
T KOG2246|consen 210 ---------QNGYS--SGGAGYVLSFAALRRLAERLLNNEDKCPQRYPSYGEDRRIGRCLAEVGVPATDE 268 (364)
T ss_pred ---------ccccc--cCCCCcceeHHHHHHHHHHHhcchhhcccccCCchhHHHHHHHHHHhCCCccCc
Confidence 11222 3788999999988887653 22 334444 99999999999999998876
No 10
>PLN03153 hypothetical protein; Provisional
Probab=99.01 E-value=6.8e-09 Score=107.14 Aligned_cols=184 Identities=18% Similarity=0.161 Sum_probs=113.0
Q ss_pred CCCeEEEEEEECCCCCH-HHHHHHHHHhccCchhhHhhhccCceEEEEEeecCCCCChhHHHHHHHHHhhCCCEEE-ec-
Q 017533 130 RPKVFVVIGINTAFSSR-KRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLR-LE- 206 (370)
Q Consensus 130 ~~~~~llI~V~S~~~~~-~rR~aIR~TW~~~~~~l~~l~~~~~i~v~FVvG~s~~~~~~~~~~I~~E~~~~~DIL~-ld- 206 (370)
..--.++++|.++.+.. +|+..|+.+|.+..- . ..+|+.....+. . +...---|-+ .|
T Consensus 119 t~~~hIvF~I~~s~~~w~~R~~yik~wW~p~~~--------r--g~v~ld~~~~~~--~-------~~~~~P~i~is~d~ 179 (537)
T PLN03153 119 LSLNHIMFGIAGSSQLWKRRKELVRLWWRPNQM--------R--GHVWLEEQVSPE--E-------GDDSLPPIMVSEDT 179 (537)
T ss_pred CccccEEEEEEEchhhhhhhhhhhhhhcCcccc--------e--eEEEecccCCCC--C-------CcCCCCCEEeCCCc
Confidence 33447888888887765 577999999998531 1 233443332110 0 0000000111 01
Q ss_pred --cc-cccccchhHHHH--HHHHHHh--cCCceEEEEecCceeecHHHHHHHHhhcCCCCceEEEEeecCcccccCCCcc
Q 017533 207 --HI-EGYHELSAKTKI--FFSTAVA--KWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKSGPVLSQKNVKY 279 (370)
Q Consensus 207 --~~-Dsy~nLt~Kt~~--~~~wa~~--~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~~lYiG~~~~~pv~rd~~~K~ 279 (370)
|. ++..+......+ +...+.. .++++||+++|||+|+.+++|+..|..+++++..|+|.....-
T Consensus 180 s~f~y~~~~Gh~sa~rI~rmv~et~~~~~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDptkp~YIGs~Se~~--------- 250 (537)
T PLN03153 180 SRFRYTNPTGHPSGLRISRIVLESFRLGLPDVRWFVLGDDDTIFNADNLVAVLSKYDPSEMVYVGGPSESH--------- 250 (537)
T ss_pred ccccccCCCCcHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccccHHHHHHHHhhcCCCCCEEeccccccc---------
Confidence 10 111222222212 3333333 4799999999999999999999999999999999999742100
Q ss_pred ccCCccccCCCCCccCcc-ccCCeeeecHHHHHHHHHhCC-CcCCC---CcchHHHHHHHhcCCCeEecCCCcee
Q 017533 280 HEPEYWKFGEEGNKYFRH-ATGQIYAISKDLATYISINQP-ILHKF---ANEDVSLGSWFIGLEVEHIDDRNMCC 349 (370)
Q Consensus 280 ~~pe~w~f~y~~~~Yp~Y-~~G~~YvlSrdla~~I~~~~~-~l~~~---~~EDV~lG~~l~gL~v~~id~~~fc~ 349 (370)
...-.|+ | .| -+|+||+||+.+++.|..... ....+ .-+|.-||.|+..++|...++.+|..
T Consensus 251 --~qn~~f~-----~-~fA~GGAG~~LSrPLae~L~~~~d~C~~rY~~~~~gD~rL~~CL~elGV~LT~~~gfhQ 317 (537)
T PLN03153 251 --SANSYFS-----H-NMAFGGGGIAISYPLAEALSRILDDCLDRYPKLYGSDDRLHACITELGVPLSREPGFHQ 317 (537)
T ss_pred --ccccccc-----c-ccccCCceEEEcHHHHHHHHHHhhhhhhhcccCCCcHHHHHHHHHHcCCCceecCCccc
Confidence 0000011 1 12 489999999999999987532 22222 45888899999989998888888865
No 11
>KOG3708 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.55 E-value=0.00015 Score=74.98 Aligned_cols=157 Identities=15% Similarity=0.160 Sum_probs=102.7
Q ss_pred EEEEEEECCCCCHHHHHHHHHHhccCchhhHhhhccCceEEEEEeecCCCCChhHHHHHHHHHhhCCCEEEecccccccc
Q 017533 134 FVVIGINTAFSSRKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYHE 213 (370)
Q Consensus 134 ~llI~V~S~~~~~~rR~aIR~TW~~~~~~l~~l~~~~~i~v~FVvG~s~~~~~~~~~~I~~E~~~~~DIL~ld~~Dsy~n 213 (370)
.++++|+|. ..---+|-+|=+..-. ++.|+.+.+.-. +|.-++..+..|+.
T Consensus 27 rl~~aVmte---~tlA~a~NrT~ahhvp-----------rv~~F~~~~~i~---------------~~~a~~~~vs~~d~ 77 (681)
T KOG3708|consen 27 RLMAAVMTE---STLALAINRTLAHHVP-----------RVHLFADSSRID---------------NDLAQLTNVSPYDL 77 (681)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHhhcc-----------eeEEeecccccc---------------ccHhhccccCcccc
Confidence 456667772 2555566666665432 566777765421 12223333444444
Q ss_pred chhHHHH-HHHHHHhc--CCceEEEEecCceeecHHHHHHHHhhcCCCCceEEEEeecCcccccCCCccccCCccccCCC
Q 017533 214 LSAKTKI-FFSTAVAK--WDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKSGPVLSQKNVKYHEPEYWKFGEE 290 (370)
Q Consensus 214 Lt~Kt~~-~~~wa~~~--~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~~lYiG~~~~~pv~rd~~~K~~~pe~w~f~y~ 290 (370)
-..|+.. .+.+..++ -++||++-+-|++|||...|+.++....-+.++|+|.-. ...
T Consensus 78 r~~~~~s~vl~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~~hmsin~dlymGEe~--------------------~~g 137 (681)
T KOG3708|consen 78 RGQKTHSMVLGLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLIDHMSINEDLYMGEEA--------------------EDG 137 (681)
T ss_pred CccccHHHHHHHHHHhhccccceEEEecCcceecHHHHHHHHhhcccccccccchhh--------------------hCc
Confidence 4455544 45565554 389999999999999999999999988888899999210 000
Q ss_pred CCccCccc-cCCeeeecHHHHHHHHHhCCCcC---CCCcchHHHHHHHh---cCCCeEec
Q 017533 291 GNKYFRHA-TGQIYAISKDLATYISINQPILH---KFANEDVSLGSWFI---GLEVEHID 343 (370)
Q Consensus 291 ~~~Yp~Y~-~G~~YvlSrdla~~I~~~~~~l~---~~~~EDV~lG~~l~---gL~v~~id 343 (370)
... | .|.||++|+.++..+-+|-.-.. .-.-+|+.+|.|++ |++.+..|
T Consensus 138 s~r----C~l~~G~LLS~s~l~~lrnnle~C~~~~lsad~d~~lgrCi~~At~v~C~~~h 193 (681)
T KOG3708|consen 138 SGR----CRLDTGMLLSQSLLHALRNNLEGCRNDILSADPDEWLGRCIQDATGVGCKPLH 193 (681)
T ss_pred cCc----cccccceeecHHHHHHHHhhHHHhhcccccCCcHHHHHHHHHHhhcCCccchh
Confidence 112 6 48899999999999988743222 22577899999994 56555544
No 12
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=96.12 E-value=0.14 Score=46.49 Aligned_cols=126 Identities=14% Similarity=0.087 Sum_probs=63.1
Q ss_pred HHHHHHhcCCceEEEEecCceeecHHHHHHHHhhc-CCCCceEEEEeecCcc--cccCCC-----ccccCCccccCCCCC
Q 017533 221 FFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRH-RSKPRVYIGCMKSGPV--LSQKNV-----KYHEPEYWKFGEEGN 292 (370)
Q Consensus 221 ~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~-~~~~~lYiG~~~~~pv--~rd~~~-----K~~~pe~w~f~y~~~ 292 (370)
.+.++.+..+.+|++.+|||+.+..+.|..++..+ .+.-.+..|.+...+. .-.... .|+... ..+.....
T Consensus 77 a~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 155 (228)
T PF13641_consen 77 ALNEALAAARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDNDRNWLTRLQDLFFARWHLRF-RSGRRALG 155 (228)
T ss_dssp HHHHHHHH---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTCCCEEEE-TT--S-EETTTS--TT-B---
T ss_pred HHHHHHHhcCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCCCCHHHHHHHHHHhhhhhhh-hhhhcccc
Confidence 45677766789999999999999999998888877 3333343343321110 000000 111100 01111111
Q ss_pred ccCccccCCeeeecHHHHHHHHHhCCCcCCCCcchHHHHHHH--hcCCCeEecCCCceeCCC
Q 017533 293 KYFRHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWF--IGLEVEHIDDRNMCCQTP 352 (370)
Q Consensus 293 ~Yp~Y~~G~~YvlSrdla~~I~~~~~~l~~~~~EDV~lG~~l--~gL~v~~id~~~fc~~~~ 352 (370)
. .++.|++.++.++++..+.--.. ....||..++..+ .|..+...++....+..|
T Consensus 156 ~--~~~~G~~~~~rr~~~~~~g~fd~---~~~~eD~~l~~r~~~~G~~~~~~~~~~v~~~~~ 212 (228)
T PF13641_consen 156 V--AFLSGSGMLFRRSALEEVGGFDP---FILGEDFDLCLRLRAAGWRIVYAPDALVYHEEP 212 (228)
T ss_dssp ---S-B--TEEEEEHHHHHHH-S--S---SSSSHHHHHHHHHHHTT--EEEEEEEEEEE--S
T ss_pred e--eeccCcEEEEEHHHHHHhCCCCC---CCcccHHHHHHHHHHCCCcEEEECCcEEEEeCC
Confidence 1 34689999999999999853222 4456999999877 466666666544444433
No 13
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=95.36 E-value=0.41 Score=48.05 Aligned_cols=164 Identities=18% Similarity=0.204 Sum_probs=84.5
Q ss_pred ceEEEEEeecCCCCChhHHHHHHHHHhhCCC--EEEeccccccccchhHHHHHHHHHHhcCCceEEEEecCceeecHHHH
Q 017533 171 GIIIRFMIGHSATSNSILDKAIDSEDAQHKD--FLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGML 248 (370)
Q Consensus 171 ~i~v~FVvG~s~~~~~~~~~~I~~E~~~~~D--IL~ld~~Dsy~nLt~Kt~~~~~wa~~~~~a~F~lKvDDDvfVnl~~L 248 (370)
.+.++++...+. +++ ...+++=.++|.+ +..+...+ -.....|.-...+ +.+..+.++++.+|+|+.+..+.|
T Consensus 70 ~~EIivvdd~s~--D~t-~~iv~~~~~~~p~~~i~~v~~~~-~~G~~~K~~~l~~-~~~~a~ge~i~~~DaD~~~~p~~L 144 (373)
T TIGR03472 70 GFQMLFGVQDPD--DPA-LAVVRRLRADFPDADIDLVIDAR-RHGPNRKVSNLIN-MLPHARHDILVIADSDISVGPDYL 144 (373)
T ss_pred CeEEEEEeCCCC--CcH-HHHHHHHHHhCCCCceEEEECCC-CCCCChHHHHHHH-HHHhccCCEEEEECCCCCcChhHH
Confidence 366777666543 222 2223322345555 32221111 1222346655443 455678999999999999999999
Q ss_pred HHHHhhcCCCCce-EEEEe-ecCcc--cccC-----CCccccCCccccCCCCCccCccccCCeeeecHHHHHHHHHhCCC
Q 017533 249 ATTLSRHRSKPRV-YIGCM-KSGPV--LSQK-----NVKYHEPEYWKFGEEGNKYFRHATGQIYAISKDLATYISINQPI 319 (370)
Q Consensus 249 ~~~L~~~~~~~~l-YiG~~-~~~pv--~rd~-----~~K~~~pe~w~f~y~~~~Yp~Y~~G~~YvlSrdla~~I~~~~~~ 319 (370)
...+.... .+++ .+++. ...+. .... ..-++.|.. ..... ..-+.++.|+.+++.|++...+---..
T Consensus 145 ~~lv~~~~-~~~v~~V~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~-~~~~~~~~G~~~a~RR~~l~~iGGf~~- 220 (373)
T TIGR03472 145 RQVVAPLA-DPDVGLVTCLYRGRPVPGFWSRLGAMGINHNFLPSV-MVARA-LGRARFCFGATMALRRATLEAIGGLAA- 220 (373)
T ss_pred HHHHHHhc-CCCcceEeccccCCCCCCHHHHHHHHHhhhhhhHHH-HHHHh-ccCCccccChhhheeHHHHHHcCChHH-
Confidence 88887764 2332 22221 11110 0000 000111100 00000 011345889999999999988853221
Q ss_pred cCCCCcchHHHHHHHh--cCCCeEec
Q 017533 320 LHKFANEDVSLGSWFI--GLEVEHID 343 (370)
Q Consensus 320 l~~~~~EDV~lG~~l~--gL~v~~id 343 (370)
......||+.+|.-+. |..+...+
T Consensus 221 ~~~~~~ED~~l~~~i~~~G~~v~~~~ 246 (373)
T TIGR03472 221 LAHHLADDYWLGELVRALGLRVVLAP 246 (373)
T ss_pred hcccchHHHHHHHHHHHcCCeEEecc
Confidence 1223369999998885 44454443
No 14
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=94.95 E-value=1.8 Score=39.34 Aligned_cols=168 Identities=11% Similarity=0.035 Sum_probs=85.8
Q ss_pred CceEEEEEeecCCCCChhHHHHHHHHHhhCCCEEEeccccccccchhHHHHHHHHHHhcCCceEEEEecCceeecHHHHH
Q 017533 170 KGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLA 249 (370)
Q Consensus 170 ~~i~v~FVvG~s~~~~~~~~~~I~~E~~~~~DIL~ld~~Dsy~nLt~Kt~~~~~wa~~~~~a~F~lKvDDDvfVnl~~L~ 249 (370)
..+.++.|.+.+. +.....++...+++..+..+.. + +.. +. ..+..+.+....+|++.+|+|..+..+.|.
T Consensus 30 ~~~evivvd~~s~---d~~~~~~~~~~~~~~~v~~i~~-~---~~~-~~-~a~N~g~~~a~~d~v~~lD~D~~~~~~~l~ 100 (249)
T cd02525 30 DLIEIIVVDGGST---DGTREIVQEYAAKDPRIRLIDN-P---KRI-QS-AGLNIGIRNSRGDIIIRVDAHAVYPKDYIL 100 (249)
T ss_pred CccEEEEEeCCCC---ccHHHHHHHHHhcCCeEEEEeC-C---CCC-ch-HHHHHHHHHhCCCEEEEECCCccCCHHHHH
Confidence 3456666655553 2233344444444333433322 1 111 11 356666666689999999999999988888
Q ss_pred HHHhhcCCCC-ceEEEEeec---Ccccc---c-CCCccccCCccccCCCCCccCccccCCeeeecHHHHHHHHHhCCCcC
Q 017533 250 TTLSRHRSKP-RVYIGCMKS---GPVLS---Q-KNVKYHEPEYWKFGEEGNKYFRHATGQIYAISKDLATYISINQPILH 321 (370)
Q Consensus 250 ~~L~~~~~~~-~lYiG~~~~---~pv~r---d-~~~K~~~pe~w~f~y~~~~Yp~Y~~G~~YvlSrdla~~I~~~~~~l~ 321 (370)
..+......+ .+..|.... .+... . ....+..... .+......+-.++.|++.++++++.+.+......
T Consensus 101 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-- 177 (249)
T cd02525 101 ELVEALKRTGADNVGGPMETIGESKFQKAIAVAQSSPLGSGGS-AYRGGAVKIGYVDTVHHGAYRREVFEKVGGFDES-- 177 (249)
T ss_pred HHHHHHhcCCCCEEecceecCCCChHHHHHHHHhhchhccCCc-cccccccccccccccccceEEHHHHHHhCCCCcc--
Confidence 8886554333 344444321 11100 0 0000000000 0000000101145788889999998887432222
Q ss_pred CCCcchHHHHHHH--hcCCCeEecCCCcee
Q 017533 322 KFANEDVSLGSWF--IGLEVEHIDDRNMCC 349 (370)
Q Consensus 322 ~~~~EDV~lG~~l--~gL~v~~id~~~fc~ 349 (370)
....||..++.-+ .|..+.++++...++
T Consensus 178 ~~~~eD~~l~~r~~~~G~~~~~~~~~~~~~ 207 (249)
T cd02525 178 LVRNEDAELNYRLRKAGYKIWLSPDIRVYY 207 (249)
T ss_pred cCccchhHHHHHHHHcCcEEEEcCCeEEEE
Confidence 2347999998666 455566665544444
No 15
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=94.86 E-value=1.8 Score=41.55 Aligned_cols=129 Identities=14% Similarity=0.189 Sum_probs=73.6
Q ss_pred HHHHHHhcCCceEEEEecCceeecHHHHHHHHhhcCCCCceEEE-Eee--cCcccccCC--------CccccCCcccc--
Q 017533 221 FFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIG-CMK--SGPVLSQKN--------VKYHEPEYWKF-- 287 (370)
Q Consensus 221 ~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~~lYiG-~~~--~~pv~rd~~--------~K~~~pe~w~f-- 287 (370)
+...+.+....+|++..|+|+.+..+-|..++......+...+| .+. .+.-....+ -.|.....|.-
T Consensus 74 a~N~g~~~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (299)
T cd02510 74 ARIAGARAATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLP 153 (299)
T ss_pred HHHHHHHHccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccCC
Confidence 34455555678999999999999988888877765444433332 221 010000000 00100000000
Q ss_pred ------C-CCCCccCccccCCeeeecHHHHHHHHHhCCCcCCCCcchHHHH--HHHhcCCCeEecCCCcee
Q 017533 288 ------G-EEGNKYFRHATGQIYAISKDLATYISINQPILHKFANEDVSLG--SWFIGLEVEHIDDRNMCC 349 (370)
Q Consensus 288 ------~-y~~~~Yp~Y~~G~~YvlSrdla~~I~~~~~~l~~~~~EDV~lG--~~l~gL~v~~id~~~fc~ 349 (370)
. .+.....++++|+++++++++...+.--.+.+..+..||+-+. .|..|..+..+.+....|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~vGgfDe~~~~~~~ED~Dl~~R~~~~G~~i~~~p~a~v~H 224 (299)
T cd02510 154 EEERRRESPTAPIRSPTMAGGLFAIDREWFLELGGYDEGMDIWGGENLELSFKVWQCGGSIEIVPCSRVGH 224 (299)
T ss_pred HHHhhhcCCCCCccCccccceeeEEEHHHHHHhCCCCCcccccCchhHHHHHHHHHcCCeEEEeeccEEEE
Confidence 0 0012334567899999999999988654444445557998876 455777777666655554
No 16
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.84 E-value=0.97 Score=40.50 Aligned_cols=169 Identities=15% Similarity=0.046 Sum_probs=87.1
Q ss_pred eEEEEEeecCCCCChhHHHHHH-HHHhhCCCEEEeccccccccchhHHHHHHHHHHhcCCceEEEEecCceeecHHHHHH
Q 017533 172 IIIRFMIGHSATSNSILDKAID-SEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLAT 250 (370)
Q Consensus 172 i~v~FVvG~s~~~~~~~~~~I~-~E~~~~~DIL~ld~~Dsy~nLt~Kt~~~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~ 250 (370)
+.++.|-..|. ++ ....+. .....+..+..++..+ ..+ ..|. ..+.++.+....+|++.+|+|..+..+.|..
T Consensus 29 ~eiivvdd~s~--d~-t~~~~~~~~~~~~~~v~~~~~~~-~~~-~g~~-~a~n~g~~~~~~d~i~~~D~D~~~~~~~l~~ 102 (229)
T cd04192 29 FEVILVDDHST--DG-TVQILEFAAAKPNFQLKILNNSR-VSI-SGKK-NALTTAIKAAKGDWIVTTDADCVVPSNWLLT 102 (229)
T ss_pred eEEEEEcCCCC--cC-hHHHHHHHHhCCCcceEEeeccC-ccc-chhH-HHHHHHHHHhcCCEEEEECCCcccCHHHHHH
Confidence 56666665543 22 223343 2222233455555443 222 2233 3456666667899999999999999988888
Q ss_pred HHhhcCCC-CceEEEEeecCcc---ccc-CCCccccCCccccCCCCCccCccccCCeeeecHHHHHHHHHhCCCcCCCCc
Q 017533 251 TLSRHRSK-PRVYIGCMKSGPV---LSQ-KNVKYHEPEYWKFGEEGNKYFRHATGQIYAISKDLATYISINQPILHKFAN 325 (370)
Q Consensus 251 ~L~~~~~~-~~lYiG~~~~~pv---~rd-~~~K~~~pe~w~f~y~~~~Yp~Y~~G~~YvlSrdla~~I~~~~~~l~~~~~ 325 (370)
.+..+... ..++.|.....+. ... ..-.+.....-........++..+.|+++++++++...+---... .....
T Consensus 103 l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~~ggf~~~-~~~~~ 181 (229)
T cd04192 103 FVAFIQKEQIGLVAGPVIYFKGKSLLAKFQRLDWLSLLGLIAGSFGLGKPFMCNGANMAYRKEAFFEVGGFEGN-DHIAS 181 (229)
T ss_pred HHHHhhcCCCcEEeeeeeecCCccHHHHHHHHHHHHHHHHHhhHHHhcCccccccceEEEEHHHHHHhcCCccc-ccccc
Confidence 88755433 3445554321111 000 000000000000000122355567899999999999987543222 23345
Q ss_pred chHHHHH--HHhcC-CCeEecCCCc
Q 017533 326 EDVSLGS--WFIGL-EVEHIDDRNM 347 (370)
Q Consensus 326 EDV~lG~--~l~gL-~v~~id~~~f 347 (370)
||..++. ...|. .+..+.+...
T Consensus 182 eD~~~~~~~~~~g~~~~~~~~~~~~ 206 (229)
T cd04192 182 GDDELLLAKVASKYPKVAYLKNPEA 206 (229)
T ss_pred CCHHHHHHHHHhCCCCEEEeeCcch
Confidence 6666654 33566 6666654433
No 17
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=94.40 E-value=1.1 Score=40.54 Aligned_cols=93 Identities=16% Similarity=0.128 Sum_probs=50.6
Q ss_pred EEEECCCCCHHHHHHHHHHhccCchhhHhhhccCceEEEEEeecCCCCChhHHHHHHHHHhhCCCEEEec-----ccccc
Q 017533 137 IGINTAFSSRKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLE-----HIEGY 211 (370)
Q Consensus 137 I~V~S~~~~~~rR~aIR~TW~~~~~~l~~l~~~~~i~v~FVvG~s~~~~~~~~~~I~~E~~~~~DIL~ld-----~~Dsy 211 (370)
|-|.|-+.+.+||+.+.+..... ++.+.|+-|-.+.. ++. .+....++.-.... ..-+.
T Consensus 4 i~vInL~~~~~Rr~~~~~~~~~~-----------~~~~e~~~Avdg~~---l~~--~~~~~~~~~~~~~~~~~~~lt~gE 67 (200)
T PF01755_consen 4 IYVINLDRSTERRERIQQQLAKL-----------GINFEFFDAVDGRD---LSE--DELFRRYDPELFKKRYGRPLTPGE 67 (200)
T ss_pred EEEEECCCCHHHHHHHHHHHHHc-----------CCceEEEEeecccc---cch--HHHHHHhhhhhhhccccccCCcce
Confidence 34567788899999998876643 34566776665421 111 11111121111110 11111
Q ss_pred ccchhHHHHHHHHHHhcCCceEEEEecCceeecHH
Q 017533 212 HELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLG 246 (370)
Q Consensus 212 ~nLt~Kt~~~~~wa~~~~~a~F~lKvDDDvfVnl~ 246 (370)
-.=.+-.+..++.+++ -+.++.+-..||++++.+
T Consensus 68 iGC~lSH~~~w~~~v~-~~~~~~lIlEDDv~~~~~ 101 (200)
T PF01755_consen 68 IGCALSHIKAWQRIVD-SGLEYALILEDDVIFDPD 101 (200)
T ss_pred EeehhhHHHHHHHHHH-cCCCeEEEEecccccccc
Confidence 1113445556666654 367899999999999965
No 18
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=93.87 E-value=1.5 Score=39.25 Aligned_cols=140 Identities=19% Similarity=0.151 Sum_probs=82.0
Q ss_pred eEEEEEeecCCCCChhHHHHHHHHHhhCC--CEEEeccccccccchhHHHHHHHHHHhcCCceEEEEecCceeecHHHHH
Q 017533 172 IIIRFMIGHSATSNSILDKAIDSEDAQHK--DFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLA 249 (370)
Q Consensus 172 i~v~FVvG~s~~~~~~~~~~I~~E~~~~~--DIL~ld~~Dsy~nLt~Kt~~~~~wa~~~~~a~F~lKvDDDvfVnl~~L~ 249 (370)
+.+++|...+. +++ ...+++-.+.|. ++..+....+. ....|.. .+..+.+....+|++..|+|+.+..+.|.
T Consensus 31 ~eiivVdd~s~--d~t-~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~-~~n~g~~~a~~d~i~~~D~D~~~~~~~l~ 105 (196)
T cd02520 31 YEILFCVQDED--DPA-IPVVRKLIAKYPNVDARLLIGGEKV-GINPKVN-NLIKGYEEARYDILVISDSDISVPPDYLR 105 (196)
T ss_pred eEEEEEeCCCc--chH-HHHHHHHHHHCCCCcEEEEecCCcC-CCCHhHH-HHHHHHHhCCCCEEEEECCCceEChhHHH
Confidence 67777776654 222 233444444554 33222221111 1223433 24555666779999999999999988888
Q ss_pred HHHhhcCCCCceEEEEeecCcccccCCCccccCCccccCCCCCccCccccCCeeeecHHHHHHHHHhCCCcCCCCcchHH
Q 017533 250 TTLSRHRSKPRVYIGCMKSGPVLSQKNVKYHEPEYWKFGEEGNKYFRHATGQIYAISKDLATYISINQPILHKFANEDVS 329 (370)
Q Consensus 250 ~~L~~~~~~~~lYiG~~~~~pv~rd~~~K~~~pe~w~f~y~~~~Yp~Y~~G~~YvlSrdla~~I~~~~~~l~~~~~EDV~ 329 (370)
..+.... .+++ |.+.+ .++.|++.++.+++.+.+.--. ....+..||..
T Consensus 106 ~l~~~~~-~~~~--~~v~~---------------------------~~~~g~~~~~r~~~~~~~ggf~-~~~~~~~eD~~ 154 (196)
T cd02520 106 RMVAPLM-DPGV--GLVTC---------------------------LCAFGKSMALRREVLDAIGGFE-AFADYLAEDYF 154 (196)
T ss_pred HHHHHhh-CCCC--CeEEe---------------------------ecccCceeeeEHHHHHhccChH-HHhHHHHHHHH
Confidence 8877642 2221 22110 0478999999999998874322 12223479999
Q ss_pred HHHHHh--cCCCeEecCCCc
Q 017533 330 LGSWFI--GLEVEHIDDRNM 347 (370)
Q Consensus 330 lG~~l~--gL~v~~id~~~f 347 (370)
++.-+. |..+.+.++...
T Consensus 155 l~~rl~~~G~~i~~~~~~~~ 174 (196)
T cd02520 155 LGKLIWRLGYRVVLSPYVVM 174 (196)
T ss_pred HHHHHHHcCCeEEEcchhee
Confidence 998874 555666665433
No 19
>PRK11204 N-glycosyltransferase; Provisional
Probab=93.85 E-value=3.4 Score=41.76 Aligned_cols=153 Identities=17% Similarity=0.197 Sum_probs=85.3
Q ss_pred HHHHHHHHhhCCCEEEeccccccccchhHHHHHHHHHHhcCCceEEEEecCceeecHHHHHHHHhhcCCCCceEEEEeec
Q 017533 189 DKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKS 268 (370)
Q Consensus 189 ~~~I~~E~~~~~DIL~ld~~Dsy~nLt~Kt~~~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~~lYiG~~~~ 268 (370)
...+++..+++..+..++..+ |. .|. ..++.+.+..+.+|++..|+|..+..+.|...+......+++ |.+.+
T Consensus 98 ~~~l~~~~~~~~~v~~i~~~~---n~-Gka-~aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v--~~v~g 170 (420)
T PRK11204 98 GEILDRLAAQIPRLRVIHLAE---NQ-GKA-NALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRV--GAVTG 170 (420)
T ss_pred HHHHHHHHHhCCcEEEEEcCC---CC-CHH-HHHHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHHHhCCCe--EEEEC
Confidence 344455455566565555333 32 243 345666666789999999999999999998888776444433 33322
Q ss_pred CcccccCCCcccc----CCccc-cCC-----CCCccCccccCCeeeecHHHHHHHHHhCCCcCCCCcchHHHHHHH--hc
Q 017533 269 GPVLSQKNVKYHE----PEYWK-FGE-----EGNKYFRHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWF--IG 336 (370)
Q Consensus 269 ~pv~rd~~~K~~~----pe~w~-f~y-----~~~~Yp~Y~~G~~YvlSrdla~~I~~~~~~l~~~~~EDV~lG~~l--~g 336 (370)
.+...+.. .+.. .++.. ++. .....+...+|.+.++.++++..+.--. +....||+-++.-+ .|
T Consensus 171 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~vgg~~---~~~~~ED~~l~~rl~~~G 246 (420)
T PRK11204 171 NPRIRNRS-TLLGRIQVGEFSSIIGLIKRAQRVYGRVFTVSGVITAFRKSALHEVGYWS---TDMITEDIDISWKLQLRG 246 (420)
T ss_pred Cceeccch-hHHHHHHHHHHHHhhhHHHHHHHHhCCceEecceeeeeeHHHHHHhCCCC---CCcccchHHHHHHHHHcC
Confidence 22221111 0100 00000 000 0001122357989999999988763211 22347999998777 56
Q ss_pred CCCeEecCCCceeCCC
Q 017533 337 LEVEHIDDRNMCCQTP 352 (370)
Q Consensus 337 L~v~~id~~~fc~~~~ 352 (370)
..+...++....+..|
T Consensus 247 ~~i~~~p~~~~~~~~p 262 (420)
T PRK11204 247 WDIRYEPRALCWILMP 262 (420)
T ss_pred CeEEeccccEEEeECc
Confidence 6677777654444333
No 20
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=93.63 E-value=2.9 Score=42.13 Aligned_cols=169 Identities=14% Similarity=0.024 Sum_probs=85.2
Q ss_pred ceEEEEEeecCCCCChhHHHHHHHHHhhCC---CEEEeccccccccchhHHHH---HHHHHHhc-CCceEEEEecCceee
Q 017533 171 GIIIRFMIGHSATSNSILDKAIDSEDAQHK---DFLRLEHIEGYHELSAKTKI---FFSTAVAK-WDADFYVKVDDDVHV 243 (370)
Q Consensus 171 ~i~v~FVvG~s~~~~~~~~~~I~~E~~~~~---DIL~ld~~Dsy~nLt~Kt~~---~~~wa~~~-~~a~F~lKvDDDvfV 243 (370)
.+.+++|-..|.+ ++ ...+++-.+++. .+..+...+.-.+-..|... +++.|.+. .+.+|++.+|+|+.+
T Consensus 70 ~~eIIVVDd~StD--~T-~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~ 146 (384)
T TIGR03469 70 KLHVILVDDHSTD--GT-ADIARAAARAYGRGDRLTVVSGQPLPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDADIAH 146 (384)
T ss_pred ceEEEEEeCCCCC--cH-HHHHHHHHHhcCCCCcEEEecCCCCCCCCcchHHHHHHHHHHHhccCCCCCEEEEECCCCCC
Confidence 3567777666542 22 222222222333 34444432222222345333 44444332 248999999999999
Q ss_pred cHHHHHHHHhhcCCCC-ceEEEEeecCcccccCCCcccc-----------CCccccCCCCCccCccccCCeeeecHHHHH
Q 017533 244 NLGMLATTLSRHRSKP-RVYIGCMKSGPVLSQKNVKYHE-----------PEYWKFGEEGNKYFRHATGQIYAISKDLAT 311 (370)
Q Consensus 244 nl~~L~~~L~~~~~~~-~lYiG~~~~~pv~rd~~~K~~~-----------pe~w~f~y~~~~Yp~Y~~G~~YvlSrdla~ 311 (370)
..+.|...+......+ .+..|....... ....+... |..|. .. .......+.|++.++++++.+
T Consensus 147 ~p~~l~~lv~~~~~~~~~~vs~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~G~~~lirr~~~~ 222 (384)
T TIGR03469 147 GPDNLARLVARARAEGLDLVSLMVRLRCE--SFWEKLLIPAFVFFFQKLYPFRWV-ND-PRRRTAAAAGGCILIRREALE 222 (384)
T ss_pred ChhHHHHHHHHHHhCCCCEEEecccccCC--CHHHHHHHHHHHHHHHHhcchhhh-cC-CCccceeecceEEEEEHHHHH
Confidence 9998888887654332 332222211000 00000000 10010 01 112234468999999999998
Q ss_pred HHHHhCCCcCCCCcchHHHHHHHh--cCCCeEecCCCc
Q 017533 312 YISINQPILHKFANEDVSLGSWFI--GLEVEHIDDRNM 347 (370)
Q Consensus 312 ~I~~~~~~l~~~~~EDV~lG~~l~--gL~v~~id~~~f 347 (370)
.+---.. ......||+.++.-+. |..+........
T Consensus 223 ~vGGf~~-~~~~~~ED~~L~~r~~~~G~~v~~~~~~~~ 259 (384)
T TIGR03469 223 RIGGIAA-IRGALIDDCTLAAAVKRSGGRIWLGLAART 259 (384)
T ss_pred HcCCHHH-HhhCcccHHHHHHHHHHcCCcEEEEecCce
Confidence 8833211 1122479999998885 445555444333
No 21
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=93.25 E-value=2.8 Score=38.54 Aligned_cols=125 Identities=18% Similarity=0.112 Sum_probs=66.6
Q ss_pred HHHHHHhcCCceEEEEecCceeecHHHHHHHHhhcCC-CCceEEEEeec-CcccccCCCccc--cCCccccCCCCCccCc
Q 017533 221 FFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRS-KPRVYIGCMKS-GPVLSQKNVKYH--EPEYWKFGEEGNKYFR 296 (370)
Q Consensus 221 ~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~-~~~lYiG~~~~-~pv~rd~~~K~~--~pe~w~f~y~~~~Yp~ 296 (370)
.+..+.+....+|++.+|+|+.+..+.|.+.+..... ...+..|.... .+.........+ ....+.........+.
T Consensus 100 a~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (251)
T cd06439 100 ALNRALALATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELVIVDGGGSGSGEGLYWKYENWLKRAESRLGSTV 179 (251)
T ss_pred HHHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEEecCCcccchhHHHHHHHHHHHHHHHHhcCCee
Confidence 3455555566799999999999998888888877642 22343443321 110000000000 0000000000011233
Q ss_pred cccCCeeeecHHHHHHHHHhCCCcCCCCcchHHHHHHHh--cCCCeEecCCCceeCC
Q 017533 297 HATGQIYAISKDLATYISINQPILHKFANEDVSLGSWFI--GLEVEHIDDRNMCCQT 351 (370)
Q Consensus 297 Y~~G~~YvlSrdla~~I~~~~~~l~~~~~EDV~lG~~l~--gL~v~~id~~~fc~~~ 351 (370)
.+.|+++++.+++.. ..-.....||..++.-+. |..+.++++...+...
T Consensus 180 ~~~g~~~~~rr~~~~------~~~~~~~~eD~~l~~~~~~~G~~~~~~~~~~~~~~~ 230 (251)
T cd06439 180 GANGAIYAIRRELFR------PLPADTINDDFVLPLRIARQGYRVVYEPDAVAYEEV 230 (251)
T ss_pred eecchHHHhHHHHhc------CCCcccchhHHHHHHHHHHcCCeEEeccccEEEEeC
Confidence 467888888888766 122233479999987774 5556666655554443
No 22
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=93.09 E-value=0.18 Score=45.60 Aligned_cols=128 Identities=15% Similarity=0.087 Sum_probs=74.2
Q ss_pred hhHHHHHHHHHHhcCCceEEEEecCceeecHHHHHHHHhhcCCCCceEEEEee-cCcccccCCCccccCCcccc---CCC
Q 017533 215 SAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMK-SGPVLSQKNVKYHEPEYWKF---GEE 290 (370)
Q Consensus 215 t~Kt~~~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~~lYiG~~~-~~pv~rd~~~K~~~pe~w~f---~y~ 290 (370)
..|+-............++++..|+|+.|+.+.|...+..+...+--.+.++. ..|. +. .....+.....| .+.
T Consensus 16 N~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~~~~~-~~-~~~~l~~~~~~~~~~~~~ 93 (175)
T PF13506_consen 16 NPKVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPRGVPA-RG-FWSRLEAAFFNFLPGVLQ 93 (175)
T ss_pred ChHHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecccccCC-cC-HHHHHHHHHHhHHHHHHH
Confidence 35666655543323789999999999999999999988877542211112211 1111 00 000001000000 000
Q ss_pred CCccCccccCCeeeecHHHHHHHHHhCCCcCCCCcchHHHHHHHhcCCCeEecCC
Q 017533 291 GNKYFRHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWFIGLEVEHIDDR 345 (370)
Q Consensus 291 ~~~Yp~Y~~G~~YvlSrdla~~I~~~~~~l~~~~~EDV~lG~~l~gL~v~~id~~ 345 (370)
.-...+++.|+.+++.+++++.+-- ...+..+--||..+|..+...+.+.+-..
T Consensus 94 a~~~~~~~~G~~m~~rr~~L~~~GG-~~~l~~~ladD~~l~~~~~~~G~~v~~~~ 147 (175)
T PF13506_consen 94 ALGGAPFAWGGSMAFRREALEEIGG-FEALADYLADDYALGRRLRARGYRVVLSP 147 (175)
T ss_pred HhcCCCceecceeeeEHHHHHHccc-HHHHhhhhhHHHHHHHHHHHCCCeEEEcc
Confidence 0124567999999999999987731 22233467999999999976665555443
No 23
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=92.61 E-value=2.3 Score=35.39 Aligned_cols=135 Identities=11% Similarity=0.090 Sum_probs=66.0
Q ss_pred ceEEEEEeecCCCCChhHHHHHHHHHhhCCCEEEeccccccccchhHHHHHHHHHHhcCCceEEEEecCceeecHHHHHH
Q 017533 171 GIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLAT 250 (370)
Q Consensus 171 ~i~v~FVvG~s~~~~~~~~~~I~~E~~~~~DIL~ld~~Dsy~nLt~Kt~~~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~ 250 (370)
.+.+++|-..+. +.....+.+-.+....+..+...++. . .-..+..+.+....+|++.+|||.++..+.|..
T Consensus 27 ~~eiivvdd~s~---d~~~~~~~~~~~~~~~i~~i~~~~n~-g----~~~~~n~~~~~a~~~~i~~ld~D~~~~~~~l~~ 98 (169)
T PF00535_consen 27 DFEIIVVDDGST---DETEEILEEYAESDPNIRYIRNPENL-G----FSAARNRGIKHAKGEYILFLDDDDIISPDWLEE 98 (169)
T ss_dssp EEEEEEEECS-S---SSHHHHHHHHHCCSTTEEEEEHCCCS-H----HHHHHHHHHHH--SSEEEEEETTEEE-TTHHHH
T ss_pred CEEEEEeccccc---cccccccccccccccccccccccccc-c----ccccccccccccceeEEEEeCCCceEcHHHHHH
Confidence 345555554442 23333333333324455555554433 2 223344444455677999999999999887777
Q ss_pred HHhhcCC-CCceEEEEee--cCccc-ccCCC---ccccCCccccCCCCCccCccccCCeeeecHHHHHHH
Q 017533 251 TLSRHRS-KPRVYIGCMK--SGPVL-SQKNV---KYHEPEYWKFGEEGNKYFRHATGQIYAISKDLATYI 313 (370)
Q Consensus 251 ~L~~~~~-~~~lYiG~~~--~~pv~-rd~~~---K~~~pe~w~f~y~~~~Yp~Y~~G~~YvlSrdla~~I 313 (370)
++..... ...+.+|... ..... ..... .+..............-..++.|++.++++++.+.+
T Consensus 99 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~ 168 (169)
T PF00535_consen 99 LVEALEKNPPDVVIGSVIYIDDDNRYPDRRLRFSFWNRFERKIFNNIRFWKISFFIGSCALFRRSVFEEI 168 (169)
T ss_dssp HHHHHHHCTTEEEEEEEEEEECTTETEECCCTSEEEECCHCHHHHTTHSTTSSEESSSCEEEEEHHHHHC
T ss_pred HHHHHHhCCCcEEEEEEEEecCCccccccccchhhhhhhhhHHHHhhhcCCcccccccEEEEEHHHHHhh
Confidence 7766544 3445566542 11110 01100 011111001011122334457889999999988764
No 24
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=92.60 E-value=0.97 Score=40.83 Aligned_cols=124 Identities=14% Similarity=0.047 Sum_probs=72.7
Q ss_pred HHHHHhcCCceEEEEecCceeecHHHHHHHHhhcCCCCceEE--EEee--c-Ccc---cccC--CCccccC-CccccCCC
Q 017533 222 FSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYI--GCMK--S-GPV---LSQK--NVKYHEP-EYWKFGEE 290 (370)
Q Consensus 222 ~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~~lYi--G~~~--~-~pv---~rd~--~~K~~~p-e~w~f~y~ 290 (370)
+..+.+..+.+|++.+|+|.++..+.|..++......+++.+ |... . ... .+.. ....+.. ..+..
T Consensus 76 ~n~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 152 (234)
T cd06421 76 LNNALAHTTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPGR--- 152 (234)
T ss_pred HHHHHHhCCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcchhHHHHHHHHHHHHHHHHHHHH---
Confidence 455555568999999999999999988888887654344321 2111 1 110 0000 0000000 00000
Q ss_pred CCccCccccCCeeeecHHHHHHHHHhCCCcCCCCcchHHHHHHH--hcCCCeEecCCCceeCC
Q 017533 291 GNKYFRHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWF--IGLEVEHIDDRNMCCQT 351 (370)
Q Consensus 291 ~~~Yp~Y~~G~~YvlSrdla~~I~~~~~~l~~~~~EDV~lG~~l--~gL~v~~id~~~fc~~~ 351 (370)
......++.|++.++++++++.+.--. ..+..||..++.-+ .|..+..+++.......
T Consensus 153 ~~~~~~~~~g~~~~~r~~~~~~ig~~~---~~~~~eD~~l~~r~~~~g~~i~~~~~~~~~~~~ 212 (234)
T cd06421 153 DRWGAAFCCGSGAVVRREALDEIGGFP---TDSVTEDLATSLRLHAKGWRSVYVPEPLAAGLA 212 (234)
T ss_pred hhcCCceecCceeeEeHHHHHHhCCCC---ccceeccHHHHHHHHHcCceEEEecCccccccC
Confidence 011244578999999999998874321 23457999999777 46667777776554443
No 25
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=92.38 E-value=6.2 Score=34.94 Aligned_cols=103 Identities=16% Similarity=0.111 Sum_probs=63.6
Q ss_pred HHHHHHHHhcCCceEEEEecCceeecHHHHHHHHhhcC-CCCceEEEEeecCcccccCCCccccCCccccCCCCCccCcc
Q 017533 219 KIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHR-SKPRVYIGCMKSGPVLSQKNVKYHEPEYWKFGEEGNKYFRH 297 (370)
Q Consensus 219 ~~~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~-~~~~lYiG~~~~~pv~rd~~~K~~~pe~w~f~y~~~~Yp~Y 297 (370)
-..+++|. ..+.+|++..|||..+..+.|...+.... +.-.++.|... .. .+
T Consensus 69 n~~~~~a~-~~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~------~~--------------~~------ 121 (202)
T cd04185 69 YEGVRRAY-ELGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVL------DP--------------DG------ 121 (202)
T ss_pred HHHHHHHh-ccCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeE------cC--------------CC------
Confidence 44566665 56789999999999999887777776654 22222222110 00 01
Q ss_pred ccCCeeeecHHHHHHHHHhCCCcCCCCcchHHHHHHH--hcCCCeEecCCCceeCC
Q 017533 298 ATGQIYAISKDLATYISINQPILHKFANEDVSLGSWF--IGLEVEHIDDRNMCCQT 351 (370)
Q Consensus 298 ~~G~~YvlSrdla~~I~~~~~~l~~~~~EDV~lG~~l--~gL~v~~id~~~fc~~~ 351 (370)
.+++.++.+++++.+.-..... ....||+.++.-+ .|..+ ...+..+.+..
T Consensus 122 -~~~~~~~~~~~~~~~g~~~~~~-~~~~eD~~~~~r~~~~G~~i-~~~~~~~~h~~ 174 (202)
T cd04185 122 -SFVGVLISRRVVEKIGLPDKEF-FIWGDDTEYTLRASKAGPGI-YVPDAVVVHKT 174 (202)
T ss_pred -ceEEEEEeHHHHHHhCCCChhh-hccchHHHHHHHHHHcCCcE-EecceEEEEcc
Confidence 3456789999988774322222 2357999998766 46666 66666666544
No 26
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=92.31 E-value=0.6 Score=41.47 Aligned_cols=117 Identities=14% Similarity=0.138 Sum_probs=70.1
Q ss_pred EEEEecCceeecHHHHHHHHhhcCCCCceEEEE--eecCcccccCCCccccCCc-ccc-----CCCCCccCccccCCeee
Q 017533 233 FYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGC--MKSGPVLSQKNVKYHEPEY-WKF-----GEEGNKYFRHATGQIYA 304 (370)
Q Consensus 233 F~lKvDDDvfVnl~~L~~~L~~~~~~~~lYiG~--~~~~pv~rd~~~K~~~pe~-w~f-----~y~~~~Yp~Y~~G~~Yv 304 (370)
||+-+|+|+.+..+.|...+.... .|++-+++ +...+. ...-.++..-++ +.. .......+.++.|++.+
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~-~~~~~~vq~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 78 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALE-DPKVDAVQGPIIFRNR-GSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLSGSGML 78 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHh-CCCceEEEccEEecCC-CChhheeehhhhhhhhhhhHHHHHhcCCCccccCccee
Confidence 688999999999999988887766 34333222 211000 000011111110 000 00012346678999999
Q ss_pred ecHHHHHHHHHhCCCcCCCCcchHHHHHHH--hcCCCeEecCCCceeCCCC
Q 017533 305 ISKDLATYISINQPILHKFANEDVSLGSWF--IGLEVEHIDDRNMCCQTPP 353 (370)
Q Consensus 305 lSrdla~~I~~~~~~l~~~~~EDV~lG~~l--~gL~v~~id~~~fc~~~~~ 353 (370)
+++++++.+.--. -.....||..+|.-+ .|..+..+++..+.+..|+
T Consensus 79 ~r~~~l~~vg~~~--~~~~~~ED~~l~~~l~~~G~~~~~~~~~~~~~~~p~ 127 (193)
T PF13632_consen 79 FRREALREVGGFD--DPFSIGEDMDLGFRLRRAGYRIVYVPDAIVYTEAPP 127 (193)
T ss_pred eeHHHHHHhCccc--ccccccchHHHHHHHHHCCCEEEEecccceeeeCCC
Confidence 9999999874211 234457999998765 5777888888766666654
No 27
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=91.67 E-value=6.1 Score=33.05 Aligned_cols=93 Identities=17% Similarity=0.222 Sum_probs=60.7
Q ss_pred HHHhcCCceEEEEecCceeecHHHHHHHHhhcCCCCce-EEEEeecCcccccCCCccccCCccccCCCCCccCccccCCe
Q 017533 224 TAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRV-YIGCMKSGPVLSQKNVKYHEPEYWKFGEEGNKYFRHATGQI 302 (370)
Q Consensus 224 wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~~l-YiG~~~~~pv~rd~~~K~~~pe~w~f~y~~~~Yp~Y~~G~~ 302 (370)
-+.+..+.+|++..|||..+..+.|..++......+.+ .++.. +.|++
T Consensus 68 ~~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~ 116 (166)
T cd04186 68 QGIREAKGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK-------------------------------VSGAF 116 (166)
T ss_pred HHHhhCCCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc-------------------------------Cceee
Confidence 33344589999999999999998888888754433322 11210 67889
Q ss_pred eeecHHHHHHHHHhCCCcCCCCcchHHHHHHH--hcCCCeEecCCCce
Q 017533 303 YAISKDLATYISINQPILHKFANEDVSLGSWF--IGLEVEHIDDRNMC 348 (370)
Q Consensus 303 YvlSrdla~~I~~~~~~l~~~~~EDV~lG~~l--~gL~v~~id~~~fc 348 (370)
.++++++++.+..-...... ..||..+..-+ .|..+...++..+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~-~~eD~~~~~~~~~~g~~i~~~~~~~~~ 163 (166)
T cd04186 117 LLVRREVFEEVGGFDEDFFL-YYEDVDLCLRARLAGYRVLYVPQAVIY 163 (166)
T ss_pred EeeeHHHHHHcCCCChhhhc-cccHHHHHHHHHHcCCeEEEccceEEE
Confidence 99999988876432222212 56888887655 56666666654443
No 28
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=90.79 E-value=17 Score=37.34 Aligned_cols=162 Identities=14% Similarity=0.174 Sum_probs=87.1
Q ss_pred ceEEEEEeecCCCCChhHHHHHHHHHhhCCCEEEeccccccccchhHHHHHHHHHHhcCCceEEEEecCceeecHHHHHH
Q 017533 171 GIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLAT 250 (370)
Q Consensus 171 ~i~v~FVvG~s~~~~~~~~~~I~~E~~~~~DIL~ld~~Dsy~nLt~Kt~~~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~ 250 (370)
++.+++|...+. +...+.+++..+++..+..+...+ |. .|. ..++.+....+.+|++..|.|..+..+.|..
T Consensus 104 ~~eIivVdDgs~---D~t~~~~~~~~~~~~~v~vv~~~~---n~-Gka-~AlN~gl~~a~~d~iv~lDAD~~~~~d~L~~ 175 (444)
T PRK14583 104 NIEVIAINDGSS---DDTAQVLDALLAEDPRLRVIHLAH---NQ-GKA-IALRMGAAAARSEYLVCIDGDALLDKNAVPY 175 (444)
T ss_pred CeEEEEEECCCC---ccHHHHHHHHHHhCCCEEEEEeCC---CC-CHH-HHHHHHHHhCCCCEEEEECCCCCcCHHHHHH
Confidence 456555544432 233344555555665554443222 22 243 4566666667899999999999999999988
Q ss_pred HHhhcCCCCceEEEEeecCcccccCCC---ccccCCccc-cCC--C-CCcc--CccccCCeeeecHHHHHHHHHhCCCcC
Q 017533 251 TLSRHRSKPRVYIGCMKSGPVLSQKNV---KYHEPEYWK-FGE--E-GNKY--FRHATGQIYAISKDLATYISINQPILH 321 (370)
Q Consensus 251 ~L~~~~~~~~lYiG~~~~~pv~rd~~~---K~~~pe~w~-f~y--~-~~~Y--p~Y~~G~~YvlSrdla~~I~~~~~~l~ 321 (370)
.+......+++ |.+.+.|..++... +....++.. ++. + ...| +..++|...++.+++++.+---. +
T Consensus 176 lv~~~~~~~~~--g~v~g~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~g~~~~~sG~~~~~rr~al~~vGg~~---~ 250 (444)
T PRK14583 176 LVAPLIANPRT--GAVTGNPRIRTRSTLIGRVQVGEFSSIIGLIKRTQRVYGQVFTVSGVVAAFRRRALADVGYWS---P 250 (444)
T ss_pred HHHHHHhCCCe--EEEEccceecCCCcchhhHHHHHHHHHHHHHHHHHHHhCCceEecCceeEEEHHHHHHcCCCC---C
Confidence 88766433433 44333222222111 111001000 000 0 0001 11257888999999988764211 2
Q ss_pred CCCcchHHHHHHH--hcCCCeEecCC
Q 017533 322 KFANEDVSLGSWF--IGLEVEHIDDR 345 (370)
Q Consensus 322 ~~~~EDV~lG~~l--~gL~v~~id~~ 345 (370)
....||.-+|.-+ .|..+.+.++.
T Consensus 251 ~~i~ED~dl~~rl~~~G~~i~~~p~a 276 (444)
T PRK14583 251 DMITEDIDISWKLQLKHWSVFFEPRG 276 (444)
T ss_pred CcccccHHHHHHHHHcCCeEEEeecc
Confidence 2346999999877 45556666544
No 29
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=88.77 E-value=18 Score=36.32 Aligned_cols=173 Identities=13% Similarity=0.116 Sum_probs=99.4
Q ss_pred eEEEEEeecCCCCChhHHHHHHHHHhhCCCEEEeccccccccchhHHHHHHHHHHhcCCceEEEEecCceeecHHHHHHH
Q 017533 172 IIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATT 251 (370)
Q Consensus 172 i~v~FVvG~s~~~~~~~~~~I~~E~~~~~DIL~ld~~Dsy~nLt~Kt~~~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~ 251 (370)
..+..|...+. +..-+.+.+-..++++.+.+... .+-...-...+.++...-+.++++..|-|+.+..+.|...
T Consensus 85 ~evivv~d~~~---d~~~~~~~~~~~~~~~~~~~~~~---~~~~~gK~~al~~~l~~~~~d~V~~~DaD~~~~~d~l~~~ 158 (439)
T COG1215 85 YEVIVVDDGST---DETYEILEELGAEYGPNFRVIYP---EKKNGGKAGALNNGLKRAKGDVVVILDADTVPEPDALREL 158 (439)
T ss_pred ceEEEECCCCC---hhHHHHHHHHHhhcCcceEEEec---cccCccchHHHHHHHhhcCCCEEEEEcCCCCCChhHHHHH
Confidence 45666655332 34444555556666544444422 1112223456677777777999999999999999999999
Q ss_pred HhhcCCCCce-EEEEee--cCc-----ccccCCCccccCC--ccccCCCCCccCccccCCeeeecHHHHHHHHHhCCCcC
Q 017533 252 LSRHRSKPRV-YIGCMK--SGP-----VLSQKNVKYHEPE--YWKFGEEGNKYFRHATGQIYAISKDLATYISINQPILH 321 (370)
Q Consensus 252 L~~~~~~~~l-YiG~~~--~~p-----v~rd~~~K~~~pe--~w~f~y~~~~Yp~Y~~G~~YvlSrdla~~I~~~~~~l~ 321 (370)
+......+.. +.|... .++ ..+-....+.... .+.... ....+..+.|...++.+++++.+. ....
T Consensus 159 ~~~f~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~G~~~~~rr~aL~~~g---~~~~ 234 (439)
T COG1215 159 VSPFEDPPVGAVVGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRLRAAS-KGGLISFLSGSSSAFRRSALEEVG---GWLE 234 (439)
T ss_pred HhhhcCCCeeEEeCCceeeecCChhhhcchhcchhhhhhHHHhhhhhh-hcCCeEEEcceeeeEEHHHHHHhC---CCCC
Confidence 9988655444 333221 111 0000000000000 000011 123577799999999999998887 2333
Q ss_pred CCCcchHHHHHHHh--cCCCeEecCCCceeCCCCCc
Q 017533 322 KFANEDVSLGSWFI--GLEVEHIDDRNMCCQTPPGN 355 (370)
Q Consensus 322 ~~~~EDV~lG~~l~--gL~v~~id~~~fc~~~~~dc 355 (370)
..--||..+|..+. |..+.++++. .+....|++
T Consensus 235 ~~i~ED~~lt~~l~~~G~~~~~~~~~-~~~~~~p~t 269 (439)
T COG1215 235 DTITEDADLTLRLHLRGYRVVYVPEA-IVWTEAPET 269 (439)
T ss_pred CceeccHHHHHHHHHCCCeEEEeecc-eEeeeCccc
Confidence 44579999998885 5567776654 333334443
No 30
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=88.53 E-value=18 Score=32.69 Aligned_cols=150 Identities=15% Similarity=0.057 Sum_probs=74.9
Q ss_pred CCCEEEeccccccccchhHHHHHHHHHHhcCCceEEEEecCceeecHHHHHHHH---hhcCCCCceE-EEEeecCccccc
Q 017533 199 HKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTL---SRHRSKPRVY-IGCMKSGPVLSQ 274 (370)
Q Consensus 199 ~~DIL~ld~~Dsy~nLt~Kt~~~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L---~~~~~~~~lY-iG~~~~~pv~rd 274 (370)
...+..+...++.. ...=.-.+++.|.. .+++|++..|+|+.+.++.|..++ ......+.+. +|..........
T Consensus 46 ~~~i~~i~~~~n~G-~~~a~N~g~~~a~~-~~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (237)
T cd02526 46 SEKIELIHLGENLG-IAKALNIGIKAALE-NGADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGE 123 (237)
T ss_pred CCcEEEEECCCcee-hHHhhhHHHHHHHh-CCCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCe
Confidence 34454444433221 23223334555443 268999999999999998888885 3333333332 232110000000
Q ss_pred CCCccccCCcc----ccCCCCCccCccccCCeeeecHHHHHHHHHhCCCcCCCCcchHHHHHHH--hcCCCeEecCCCce
Q 017533 275 KNVKYHEPEYW----KFGEEGNKYFRHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWF--IGLEVEHIDDRNMC 348 (370)
Q Consensus 275 ~~~K~~~pe~w----~f~y~~~~Yp~Y~~G~~YvlSrdla~~I~~~~~~l~~~~~EDV~lG~~l--~gL~v~~id~~~fc 348 (370)
....+....++ ........-..++.|++.++++++...+.--...+ .+..||+.++.-+ .|..+..+++....
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~ggfd~~~-~~~~eD~d~~~r~~~~G~~~~~~~~~~v~ 202 (237)
T cd02526 124 NSPGVRKSGYKLRIQKEGEEGLKEVDFLITSGSLISLEALEKVGGFDEDL-FIDYVDTEWCLRARSKGYKIYVVPDAVLK 202 (237)
T ss_pred eccceeccCccceecccccCCceEeeeeeccceEEcHHHHHHhCCCCHHH-cCccchHHHHHHHHHcCCcEEEEcCeEEE
Confidence 00000000000 00000111123456778899999888874322222 2346899998777 46667677666665
Q ss_pred eCC
Q 017533 349 CQT 351 (370)
Q Consensus 349 ~~~ 351 (370)
+..
T Consensus 203 h~~ 205 (237)
T cd02526 203 HEL 205 (237)
T ss_pred ecc
Confidence 543
No 31
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=88.36 E-value=11 Score=33.12 Aligned_cols=117 Identities=13% Similarity=0.054 Sum_probs=64.8
Q ss_pred HHHHHHhcCCceEEEEecCceeecHHHHHHHHhhcCCCC--ceEEEEeec--CcccccCCCccccCCc----cccCCCCC
Q 017533 221 FFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKP--RVYIGCMKS--GPVLSQKNVKYHEPEY----WKFGEEGN 292 (370)
Q Consensus 221 ~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~--~lYiG~~~~--~pv~rd~~~K~~~pe~----w~f~y~~~ 292 (370)
.+..+....+.+|++..|+|.++..+.|...+......+ .++.|.+.. .... ....+. .|.. ..|. ..
T Consensus 71 a~N~g~~~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~--~~ 146 (201)
T cd04195 71 ALNEGLKHCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSDGN-DIGKRR-LPTSHDDILKFA--RR 146 (201)
T ss_pred HHHHHHHhcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECCCCC-eecccc-CCCCHHHHHHHh--cc
Confidence 355566666899999999999999988888887654333 354454321 1100 000000 1100 0110 00
Q ss_pred ccCccccCCeeeecHHHHHHHHHhCCCcCCCCcchHHHHHHH--hcCCCeEecCCC
Q 017533 293 KYFRHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWF--IGLEVEHIDDRN 346 (370)
Q Consensus 293 ~Yp~Y~~G~~YvlSrdla~~I~~~~~~l~~~~~EDV~lG~~l--~gL~v~~id~~~ 346 (370)
.-| ..|+..++.+.++..+..-. +....||..+...+ .|..+.++++..
T Consensus 147 ~~~--~~~~~~~~rr~~~~~~g~~~---~~~~~eD~~~~~r~~~~g~~~~~~~~~~ 197 (201)
T cd04195 147 RSP--FNHPTVMFRKSKVLAVGGYQ---DLPLVEDYALWARMLANGARFANLPEIL 197 (201)
T ss_pred CCC--CCChHHhhhHHHHHHcCCcC---CCCCchHHHHHHHHHHcCCceecccHHH
Confidence 111 24566778887776553221 12568999998877 466676665543
No 32
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=88.26 E-value=11 Score=33.18 Aligned_cols=117 Identities=16% Similarity=0.087 Sum_probs=65.1
Q ss_pred HHHhcCCceEEEEecCceeecHHHHHHHHhh-cC-CCCceEEEEee----cCcccccCCCccccCCccc--cCCCCCccC
Q 017533 224 TAVAKWDADFYVKVDDDVHVNLGMLATTLSR-HR-SKPRVYIGCMK----SGPVLSQKNVKYHEPEYWK--FGEEGNKYF 295 (370)
Q Consensus 224 wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~-~~-~~~~lYiG~~~----~~pv~rd~~~K~~~pe~w~--f~y~~~~Yp 295 (370)
.+......+|++..|+|..+.++.|..++.. .. +...++.|.+. .+..... .+....... .........
T Consensus 73 ~g~~~~~g~~v~~ld~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 149 (214)
T cd04196 73 SLLQAADGDYVFFCDQDDIWLPDKLERLLKAFLKDDKPLLVYSDLELVDENGNPIGE---SFFEYQKIKPGTSFNNLLFQ 149 (214)
T ss_pred HHHHhCCCCEEEEECCCcccChhHHHHHHHHHhcCCCceEEecCcEEECCCCCCccc---ccccccccCCccCHHHHHHh
Confidence 3455578999999999999998888888876 22 33344444321 1111110 000000000 000001223
Q ss_pred ccccCCeeeecHHHHHHHHHhCCCcCCCCcchHHHHHHHh-cCCCeEecCC
Q 017533 296 RHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWFI-GLEVEHIDDR 345 (370)
Q Consensus 296 ~Y~~G~~YvlSrdla~~I~~~~~~l~~~~~EDV~lG~~l~-gL~v~~id~~ 345 (370)
.++.|+++++.+++++.+....... ...||..+...+. +-.+..+++.
T Consensus 150 ~~~~~~~~~~r~~~~~~~~~~~~~~--~~~~D~~~~~~~~~~~~~~~~~~~ 198 (214)
T cd04196 150 NVVTGCTMAFNRELLELALPFPDAD--VIMHDWWLALLASAFGKVVFLDEP 198 (214)
T ss_pred CccCCceeeEEHHHHHhhccccccc--cccchHHHHHHHHHcCceEEcchh
Confidence 4567999999999999886543332 4578888776554 3345555554
No 33
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=87.58 E-value=6.4 Score=34.26 Aligned_cols=133 Identities=11% Similarity=0.088 Sum_probs=73.6
Q ss_pred ceEEEEEeecCCCCChhHHHHHHHHHhhCCCEEEeccccccccchhHHHHHHHHHHhcCCceEEEEecCceeecHHHHHH
Q 017533 171 GIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLAT 250 (370)
Q Consensus 171 ~i~v~FVvG~s~~~~~~~~~~I~~E~~~~~DIL~ld~~Dsy~nLt~Kt~~~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~ 250 (370)
.+.++.|-..|. ++. ...++....++..+..+....++ .|. .+++.+.+....+|++.+|+|.....+.|..
T Consensus 29 ~~eiivvdd~s~--d~t-~~~~~~~~~~~~~i~~i~~~~n~----G~~-~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~ 100 (181)
T cd04187 29 DYEIIFVDDGST--DRT-LEILRELAARDPRVKVIRLSRNF----GQQ-AALLAGLDHARGDAVITMDADLQDPPELIPE 100 (181)
T ss_pred CeEEEEEeCCCC--ccH-HHHHHHHHhhCCCEEEEEecCCC----CcH-HHHHHHHHhcCCCEEEEEeCCCCCCHHHHHH
Confidence 456666655543 222 23344444455556555543332 122 3444455556679999999999999888888
Q ss_pred HHhhcCCCCceEEEEeecC--cccccCCCcccc-CCccccCCCCCccCccccCCeeeecHHHHHHHHH
Q 017533 251 TLSRHRSKPRVYIGCMKSG--PVLSQKNVKYHE-PEYWKFGEEGNKYFRHATGQIYAISKDLATYISI 315 (370)
Q Consensus 251 ~L~~~~~~~~lYiG~~~~~--pv~rd~~~K~~~-pe~w~f~y~~~~Yp~Y~~G~~YvlSrdla~~I~~ 315 (370)
.+....+...+..|..... +....-..+.+. ..... .....+...|+.+++++.+++.+..
T Consensus 101 l~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~r~~~~~i~~ 164 (181)
T cd04187 101 MLAKWEEGYDVVYGVRKNRKESWLKRLTSKLFYRLINKL----SGVDIPDNGGDFRLMDRKVVDALLL 164 (181)
T ss_pred HHHHHhCCCcEEEEEecCCcchHHHHHHHHHHHHHHHHH----cCCCCCCCCCCEEEEcHHHHHHHHh
Confidence 8877655556766764311 110000001110 00000 1123345678899999999998764
No 34
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=87.46 E-value=17 Score=32.88 Aligned_cols=126 Identities=17% Similarity=0.163 Sum_probs=69.8
Q ss_pred HHHHHHhcC--CceEEEEecCceeecHHHHHHHHhhcCCCCceEEEEeecCcccccCCCccccC-Ccccc----C--CCC
Q 017533 221 FFSTAVAKW--DADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKSGPVLSQKNVKYHEP-EYWKF----G--EEG 291 (370)
Q Consensus 221 ~~~wa~~~~--~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~~lYiG~~~~~pv~rd~~~K~~~p-e~w~f----~--y~~ 291 (370)
.+.++.+.. +.+|++..|+|+.+..+.|..++.... .+.+ |.+......++....++.. .+|.+ . .+.
T Consensus 73 a~n~g~~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~-~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (236)
T cd06435 73 ALNYALERTAPDAEIIAVIDADYQVEPDWLKRLVPIFD-DPRV--GFVQAPQDYRDGEESLFKRMCYAEYKGFFDIGMVS 149 (236)
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCCcCHHHHHHHHHHhc-CCCe--eEEecCccccCCCccHHHHHHhHHHHHHHHHHhcc
Confidence 566666653 479999999999999999999887764 3332 3221110111111111110 00100 0 000
Q ss_pred -Cc-cCccccCCeeeecHHHHHHHHHhCCCcCCCCcchHHHHHHH--hcCCCeEecCCCceeCCCC
Q 017533 292 -NK-YFRHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWF--IGLEVEHIDDRNMCCQTPP 353 (370)
Q Consensus 292 -~~-Yp~Y~~G~~YvlSrdla~~I~~~~~~l~~~~~EDV~lG~~l--~gL~v~~id~~~fc~~~~~ 353 (370)
.. -..++.|.+.+++++++..+---.. .+..||+-++.=+ .|..+..+++. ++....|
T Consensus 150 ~~~~~~~~~~g~~~~~rr~~~~~iGgf~~---~~~~eD~dl~~r~~~~G~~~~~~~~~-~~~~~~~ 211 (236)
T cd06435 150 RNERNAIIQHGTMCLIRRSALDDVGGWDE---WCITEDSELGLRMHEAGYIGVYVAQS-YGHGLIP 211 (236)
T ss_pred ccccCceEEecceEEEEHHHHHHhCCCCC---ccccchHHHHHHHHHCCcEEEEcchh-hccCcCc
Confidence 00 0124678889999999998743222 2358999998766 46666666653 4443343
No 35
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=87.45 E-value=5.6 Score=32.85 Aligned_cols=95 Identities=12% Similarity=0.110 Sum_probs=51.4
Q ss_pred HHHHHHHhcCCceEEEEecCceeecHHHHHHHHhhcCCCCc--eEEEEeec---C-cccccC-CCccccCCcccc-CCCC
Q 017533 220 IFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPR--VYIGCMKS---G-PVLSQK-NVKYHEPEYWKF-GEEG 291 (370)
Q Consensus 220 ~~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~~--lYiG~~~~---~-pv~rd~-~~K~~~pe~w~f-~y~~ 291 (370)
..+.++.+..+.+|++.+|+|..+....|..++......+. +..|.... . ...... ...+........ ....
T Consensus 68 ~~~n~~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (180)
T cd06423 68 GALNAGLRHAKGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVRNGSENLLTRLQAIEYLSIFRLGRRAQSA 147 (180)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeEEEecCcCcceeccchheecceeeeeeehhhe
Confidence 44555666668999999999999998888877555443333 33333221 1 011000 001110000000 0001
Q ss_pred CccCccccCCeeeecHHHHHHHH
Q 017533 292 NKYFRHATGQIYAISKDLATYIS 314 (370)
Q Consensus 292 ~~Yp~Y~~G~~YvlSrdla~~I~ 314 (370)
..++.++.|.+++++++++..+-
T Consensus 148 ~~~~~~~~g~~~~~~~~~~~~~g 170 (180)
T cd06423 148 LGGVLVLSGAFGAFRREALREVG 170 (180)
T ss_pred ecceeecCchHHHHHHHHHHHhC
Confidence 23445678999999999988764
No 36
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=85.35 E-value=8 Score=32.83 Aligned_cols=116 Identities=10% Similarity=0.032 Sum_probs=64.0
Q ss_pred EEECCCCCHHHHHHHHHHhccCchhhHhhhccCceEEEEEeecCCCCChhHHHHHHHHHhhCCCEE-Eeccccccccchh
Q 017533 138 GINTAFSSRKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFL-RLEHIEGYHELSA 216 (370)
Q Consensus 138 ~V~S~~~~~~rR~aIR~TW~~~~~~l~~l~~~~~i~v~FVvG~s~~~~~~~~~~I~~E~~~~~DIL-~ld~~Dsy~nLt~ 216 (370)
.|.+-+...+||+.+++..... ++.+.|+-|-.+.. .....+......+.... .-+..-+.-.-.+
T Consensus 3 ~vInL~~~~~Rr~~~~~~~~~~-----------~~~~~~~~Avd~~~--~~~~~~~~~~~~~~~~~~~~~l~~gEiGC~l 69 (128)
T cd06532 3 FVINLDRSTDRRERMEAQLAAL-----------GLDFEFFDAVDGKD--LSEEELAALYDALFLPRYGRPLTPGEIGCFL 69 (128)
T ss_pred EEEECCCCHHHHHHHHHHHHHc-----------CCCeEEEecccccc--CCHHHHHHHhHHHhhhhcCCCCChhhHHHHH
Confidence 4567788899999999855433 45566776665321 11111111111000000 0001111111122
Q ss_pred HHHHHHHHHHhcCCceEEEEecCceeecHHHHHHHHhhcCCCCceEEEEeecCcccccCCCccccCCccccCCCCCccCc
Q 017533 217 KTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKSGPVLSQKNVKYHEPEYWKFGEEGNKYFR 296 (370)
Q Consensus 217 Kt~~~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~~lYiG~~~~~pv~rd~~~K~~~pe~w~f~y~~~~Yp~ 296 (370)
-.+..|+.+++ -+.++.+-..||+.+..+
T Consensus 70 SH~~~w~~~~~-~~~~~alIlEDDv~~~~~-------------------------------------------------- 98 (128)
T cd06532 70 SHYKLWQKIVE-SNLEYALILEDDAILDPD-------------------------------------------------- 98 (128)
T ss_pred HHHHHHHHHHH-cCCCeEEEEccCcEECCC--------------------------------------------------
Confidence 33344444443 356889999999988776
Q ss_pred cccCCeeeecHHHHHHHHHhCCC
Q 017533 297 HATGQIYAISKDLATYISINQPI 319 (370)
Q Consensus 297 Y~~G~~YvlSrdla~~I~~~~~~ 319 (370)
...+|+||+..|+++......
T Consensus 99 --~~~~Y~vs~~~A~~ll~~~~~ 119 (128)
T cd06532 99 --GTAGYLVSRKGAKKLLAALEP 119 (128)
T ss_pred --CceEEEeCHHHHHHHHHhCCC
Confidence 456799999999999987654
No 37
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=85.28 E-value=22 Score=32.76 Aligned_cols=122 Identities=13% Similarity=0.068 Sum_probs=68.3
Q ss_pred HHHHHHHhcCCceEEEEecCceeecHHHHHHHHhhcCCC-Cce-EEEE-eecCcccccCCCccccCCcc-ccC-----CC
Q 017533 220 IFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSK-PRV-YIGC-MKSGPVLSQKNVKYHEPEYW-KFG-----EE 290 (370)
Q Consensus 220 ~~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~-~~l-YiG~-~~~~pv~rd~~~K~~~pe~w-~f~-----y~ 290 (370)
..+..+.+....+|++.+|+|+.+..+.|...+...... +.+ ++|. +...........+.+..+++ .|. ..
T Consensus 74 ~a~n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (241)
T cd06427 74 KACNYALAFARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPLNYYNARENWLTRMFALEYAAWFDYLLPGLA 153 (241)
T ss_pred HHHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666678999999999999999999988876532 343 2222 21110000000011100000 000 00
Q ss_pred CCccCccccCCeeeecHHHHHHHHHhCCCcCCCCcchHHHHHHHh--cCCCeEecC
Q 017533 291 GNKYFRHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWFI--GLEVEHIDD 344 (370)
Q Consensus 291 ~~~Yp~Y~~G~~YvlSrdla~~I~~~~~~l~~~~~EDV~lG~~l~--gL~v~~id~ 344 (370)
....+..++|++.++++++++.+.--.. ....||..++.-+. |..+..++.
T Consensus 154 ~~~~~~~~~g~~~~~rr~~~~~vgg~~~---~~~~eD~~l~~rl~~~G~r~~~~~~ 206 (241)
T cd06427 154 RLGLPIPLGGTSNHFRTDVLRELGGWDP---FNVTEDADLGLRLARAGYRTGVLNS 206 (241)
T ss_pred hcCCeeecCCchHHhhHHHHHHcCCCCc---ccchhhHHHHHHHHHCCceEEEecc
Confidence 0123334678889999999888743222 23479999987664 555666654
No 38
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=84.79 E-value=39 Score=34.72 Aligned_cols=127 Identities=11% Similarity=0.124 Sum_probs=69.8
Q ss_pred HHHHHHHhcCCceEEEEecCceeecHHHHHHHHhhcCCCCceE--EEEeecCcccccCCCcc---ccCCccccCCC----
Q 017533 220 IFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVY--IGCMKSGPVLSQKNVKY---HEPEYWKFGEE---- 290 (370)
Q Consensus 220 ~~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~~lY--iG~~~~~pv~rd~~~K~---~~pe~w~f~y~---- 290 (370)
.+++++.+..+.+|++..|+|..+..+.|...+......+++- .|.+...+...+....+ +..+.-.+.|.
T Consensus 121 ~AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l 200 (439)
T TIGR03111 121 KALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPDIHAMTGVILTDKELIEKTKGRFLKLIRRCEYFEYAQAFL 200 (439)
T ss_pred HHHHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHHhCCCeEEEEeEEecCchhhhhhcchhhhHhHHhHHHHHHHHHH
Confidence 3566777777899999999999999999998888775444442 23332211100000000 11000000000
Q ss_pred -------CCccCccccCCeeeecHHHHHHHHHhCCCcCCCCcchHHHHHHH---hcCCCeEecCCCcee
Q 017533 291 -------GNKYFRHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWF---IGLEVEHIDDRNMCC 349 (370)
Q Consensus 291 -------~~~Yp~Y~~G~~YvlSrdla~~I~~~~~~l~~~~~EDV~lG~~l---~gL~v~~id~~~fc~ 349 (370)
....+..++|++.++.++++..+.--. +..-.||..++.-+ .|-.+....+..+..
T Consensus 201 ~~r~~~s~~~~~~~~sGa~~~~Rr~~l~~vggf~---~~~i~ED~~l~~rl~~~~g~kv~~~~~a~~~~ 266 (439)
T TIGR03111 201 AGRNFESQVNSLFTLSGAFSAFRRETILKTQLYN---SETVGEDTDMTFQIRELLDGKVYLCENAIFYV 266 (439)
T ss_pred hhhHHHHhcCCeEEEccHHHhhhHHHHHHhCCCC---CCCcCccHHHHHHHHHhcCCeEEECCCCEEEE
Confidence 001122357888889999877653211 12248999998644 244555555555544
No 39
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=84.03 E-value=7.6 Score=37.72 Aligned_cols=147 Identities=14% Similarity=0.107 Sum_probs=82.4
Q ss_pred CCCEEEeccccccccchhHHHHHHHHHHhcCCceEEEEecCceeecHHHHHHHHhhcCCCCceE-EEEe-e--cCccc--
Q 017533 199 HKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVY-IGCM-K--SGPVL-- 272 (370)
Q Consensus 199 ~~DIL~ld~~Dsy~nLt~Kt~~~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~~lY-iG~~-~--~~pv~-- 272 (370)
+.++..+...++.-= ..=.-..++.|....+. |++-.++|+.+..+.|.+++......+... .|.. . .++..
T Consensus 55 ~~~v~~i~~~~NlG~-agg~n~g~~~a~~~~~~-~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~ 132 (305)
T COG1216 55 FPNVRLIENGENLGF-AGGFNRGIKYALAKGDD-YVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYID 132 (305)
T ss_pred CCcEEEEEcCCCccc-hhhhhHHHHHHhcCCCc-EEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcchh
Confidence 678877765554321 11111456666554322 999999999999999999998876554333 3332 1 11110
Q ss_pred -ccC-----CCcc-ccCCccccC---CCCCccCccccCCeeeecHHHHHHHHHhCCCcCCCCcchHHHHHHH--hcCCCe
Q 017533 273 -SQK-----NVKY-HEPEYWKFG---EEGNKYFRHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWF--IGLEVE 340 (370)
Q Consensus 273 -rd~-----~~K~-~~pe~w~f~---y~~~~Yp~Y~~G~~YvlSrdla~~I~~~~~~l~~~~~EDV~lG~~l--~gL~v~ 340 (370)
... ...| +.+.. ... .+.....++++|++.+|++++.+.+-. ...--.+..||+-++.=+ .|..+.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~G~~~li~~~~~~~vG~-~de~~F~y~eD~D~~~R~~~~G~~i~ 210 (305)
T COG1216 133 RRGGESDGLTGGWRASPLL-EIAPDLSSYLEVVASLSGACLLIRREAFEKVGG-FDERFFIYYEDVDLCLRARKAGYKIY 210 (305)
T ss_pred eeccccccccccceecccc-cccccccchhhhhhhcceeeeEEcHHHHHHhCC-CCcccceeehHHHHHHHHHHcCCeEE
Confidence 110 0011 11100 000 001112225789999999999999976 333224469999999766 455555
Q ss_pred EecCCCcee
Q 017533 341 HIDDRNMCC 349 (370)
Q Consensus 341 ~id~~~fc~ 349 (370)
.+.+....|
T Consensus 211 ~~p~a~i~H 219 (305)
T COG1216 211 YVPDAIIYH 219 (305)
T ss_pred EeeccEEEE
Confidence 555555544
No 40
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=82.65 E-value=9.6 Score=32.85 Aligned_cols=101 Identities=15% Similarity=0.128 Sum_probs=59.4
Q ss_pred HHHHHHhcCCceEEEEecCceeecHHHHHHHHhhcCCCCceEEEEeecCcccccCCCccccCCccccCCCCCccCccccC
Q 017533 221 FFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKSGPVLSQKNVKYHEPEYWKFGEEGNKYFRHATG 300 (370)
Q Consensus 221 ~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~~lYiG~~~~~pv~rd~~~K~~~pe~w~f~y~~~~Yp~Y~~G 300 (370)
.+..+.+....+|++..|+|..+..+.|...+....+. ....|.... .... .-.....|
T Consensus 70 ~~n~g~~~a~g~~i~~lD~D~~~~~~~l~~~~~~~~~~-~~v~g~~~~------------~~~~--------~~~~~~~~ 128 (182)
T cd06420 70 IRNKAIAAAKGDYLIFIDGDCIPHPDFIADHIELAEPG-VFLSGSRVL------------LNEK--------LTERGIRG 128 (182)
T ss_pred HHHHHHHHhcCCEEEEEcCCcccCHHHHHHHHHHhCCC-cEEecceee------------cccc--------cceeEecc
Confidence 34455555678999999999999988888887766322 222232110 0000 00023467
Q ss_pred CeeeecHHHHHHHHHhCCCcCCCCcchHHHHHHHh--cCCCeEe
Q 017533 301 QIYAISKDLATYISINQPILHKFANEDVSLGSWFI--GLEVEHI 342 (370)
Q Consensus 301 ~~YvlSrdla~~I~~~~~~l~~~~~EDV~lG~~l~--gL~v~~i 342 (370)
+.+++.+..+..+.--.+....+..||+.++.-+. |+.+..+
T Consensus 129 ~~~~~~r~~~~~~ggf~~~~~~~~~eD~~l~~r~~~~g~~~~~~ 172 (182)
T cd06420 129 CNMSFWKKDLLAVNGFDEEFTGWGGEDSELVARLLNSGIKFRKL 172 (182)
T ss_pred ceEEEEHHHHHHhCCCCcccccCCcchHHHHHHHHHcCCcEEEe
Confidence 77888888777543323333334579999987664 4444444
No 41
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=81.87 E-value=9.2 Score=33.03 Aligned_cols=119 Identities=12% Similarity=-0.027 Sum_probs=66.6
Q ss_pred HHHHHHHhcCCceEEEEecCceeecHHHHHHHHhhcC--CCCceEEEEee--cCcccccCCCccccCCccccCCCCCccC
Q 017533 220 IFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHR--SKPRVYIGCMK--SGPVLSQKNVKYHEPEYWKFGEEGNKYF 295 (370)
Q Consensus 220 ~~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~--~~~~lYiG~~~--~~pv~rd~~~K~~~pe~w~f~y~~~~Yp 295 (370)
..+..+.+..+.+|++..|+|..+..+.+...+.... +...+..|... .+.. .....+...+.. .......
T Consensus 65 ~a~n~~~~~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~ 139 (202)
T cd06433 65 DAMNKGIALATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENG-RVIGRRRPPPFL----DKFLLYG 139 (202)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEEcCCC-CcccCCCCcchh----hhHHhhc
Confidence 4455666667899999999999999998888874332 33455556532 1111 000111000110 0011233
Q ss_pred ccccCCeeeecHHHHHHHHHhCCCcCCCCcchHHHHHHH--hcCCCeEecCC
Q 017533 296 RHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWF--IGLEVEHIDDR 345 (370)
Q Consensus 296 ~Y~~G~~YvlSrdla~~I~~~~~~l~~~~~EDV~lG~~l--~gL~v~~id~~ 345 (370)
.+..|++.++++++...+..-...+ ...||..+..-+ .|..+.+++..
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~f~~~~--~~~~D~~~~~r~~~~g~~~~~~~~~ 189 (202)
T cd06433 140 MPICHQATFFRRSLFEKYGGFDESY--RIAADYDLLLRLLLAGKIFKYLPEV 189 (202)
T ss_pred CcccCcceEEEHHHHHHhCCCchhh--CchhhHHHHHHHHHcCCceEecchh
Confidence 4567888899999998875322222 235787776555 45555555443
No 42
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=81.17 E-value=13 Score=32.04 Aligned_cols=136 Identities=9% Similarity=-0.019 Sum_probs=70.7
Q ss_pred ceEEEEEeecCCCCChhHHHHHHHHHhhCCCEEEeccccccccchhHHHHHHHHHHhcCCceEEEEecCceeecHHHHHH
Q 017533 171 GIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLAT 250 (370)
Q Consensus 171 ~i~v~FVvG~s~~~~~~~~~~I~~E~~~~~DIL~ld~~Dsy~nLt~Kt~~~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~ 250 (370)
...++.+...+. +.....++.-..++..+..+...++.. .-..+..+.+....+|++..|+|..+..+.|..
T Consensus 28 ~~eiivvd~~s~---d~~~~~~~~~~~~~~~~~~~~~~~n~G-----~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~ 99 (185)
T cd04179 28 DYEIIVVDDGST---DGTAEIARELAARVPRVRVIRLSRNFG-----KGAAVRAGFKAARGDIVVTMDADLQHPPEDIPK 99 (185)
T ss_pred CEEEEEEcCCCC---CChHHHHHHHHHhCCCeEEEEccCCCC-----ccHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHH
Confidence 345555544443 233444555555566655555444332 123444445555569999999999999998888
Q ss_pred HHhh-cCCCCceEEEEeec-CcccccC-CCccccC-CccccCCCCCccCccccCCeeeecHHHHHHHH
Q 017533 251 TLSR-HRSKPRVYIGCMKS-GPVLSQK-NVKYHEP-EYWKFGEEGNKYFRHATGQIYAISKDLATYIS 314 (370)
Q Consensus 251 ~L~~-~~~~~~lYiG~~~~-~pv~rd~-~~K~~~p-e~w~f~y~~~~Yp~Y~~G~~YvlSrdla~~I~ 314 (370)
++.. ......+..|.... .+....+ ..++... ..+.+..-...-.....|+.+++++++++.+.
T Consensus 100 l~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~ 167 (185)
T cd04179 100 LLEKLLEGGADVVIGSRFVRGGGAGMPLLRRLGSRLFNFLIRLLLGVRISDTQSGFRLFRREVLEALL 167 (185)
T ss_pred HHHHHhccCCcEEEEEeecCCCcccchHHHHHHHHHHHHHHHHHcCCCCcCCCCceeeeHHHHHHHHH
Confidence 8886 44445666665321 1100000 0000000 00000000111223356888899999999986
No 43
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=81.01 E-value=37 Score=29.65 Aligned_cols=118 Identities=12% Similarity=0.121 Sum_probs=62.9
Q ss_pred HHHHHHHhcCCceEEEEecCceeecHHHHHHHHhhcCCCC--ceEEEEeec-CcccccCCCccccCCccccCCCCCccCc
Q 017533 220 IFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKP--RVYIGCMKS-GPVLSQKNVKYHEPEYWKFGEEGNKYFR 296 (370)
Q Consensus 220 ~~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~--~lYiG~~~~-~pv~rd~~~K~~~pe~w~f~y~~~~Yp~ 296 (370)
..+.++.+....+|++..|+|..+..+.|...++.....+ .+..+.... ... ......++.+. |... ..+..
T Consensus 73 ~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~-~~~~---~~~~~ 147 (202)
T cd04184 73 AATNSALELATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYSDEDKIDEG-GKRSEPFFKPD-WSPD---LLLSQ 147 (202)
T ss_pred HHHHHHHHhhcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEccHHhccCC-CCEeccccCCC-CCHH---Hhhhc
Confidence 3455555556789999999999999998888887763222 333232110 000 00001111111 1110 01111
Q ss_pred cccCCeeeecHHHHHHHHHhCCCcCCCCcchHHHHHHHh--cCCCeEecC
Q 017533 297 HATGQIYAISKDLATYISINQPILHKFANEDVSLGSWFI--GLEVEHIDD 344 (370)
Q Consensus 297 Y~~G~~YvlSrdla~~I~~~~~~l~~~~~EDV~lG~~l~--gL~v~~id~ 344 (370)
-+.|++-+++++++..+.--... ....||.-++.-+. |..+.++++
T Consensus 148 ~~~~~~~~~~r~~~~~iggf~~~--~~~~eD~~l~~rl~~~g~~~~~~~~ 195 (202)
T cd04184 148 NYIGHLLVYRRSLVRQVGGFREG--FEGAQDYDLVLRVSEHTDRIAHIPR 195 (202)
T ss_pred CCccceEeEEHHHHHHhCCCCcC--cccchhHHHHHHHHhccceEEEccH
Confidence 13456667899988877532221 22469988887764 444555554
No 44
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=77.59 E-value=55 Score=29.64 Aligned_cols=123 Identities=15% Similarity=0.114 Sum_probs=65.6
Q ss_pred HHHHHHhcCCceEEEEecCceeecHHHHHHHHhhcCCCCceEEEEeecCcccccCCCcccc-----CCccccCC-----C
Q 017533 221 FFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKSGPVLSQKNVKYHE-----PEYWKFGE-----E 290 (370)
Q Consensus 221 ~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~~lYiG~~~~~pv~rd~~~K~~~-----pe~w~f~y-----~ 290 (370)
.++.+.+....+|++.+|.|+.+..+.|...+... ..+.+ |.+.+.....++...|.. +..+.+.. .
T Consensus 78 a~n~g~~~a~~~~i~~~DaD~~~~~~~l~~~~~~~-~~~~v--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (232)
T cd06437 78 ALAEGMKVAKGEYVAIFDADFVPPPDFLQKTPPYF-ADPKL--GFVQTRWGHINANYSLLTRVQAMSLDYHFTIEQVARS 154 (232)
T ss_pred HHHHHHHhCCCCEEEEEcCCCCCChHHHHHhhhhh-cCCCe--EEEecceeeEcCCCchhhHhhhhhHHhhhhHhHhhHh
Confidence 45566666789999999999999999988855443 23332 332211111111111110 00000000 0
Q ss_pred CCccCccccCCeeeecHHHHHHHHHhCCCcCCCCcchHHHHHHH--hcCCCeEecCCCcee
Q 017533 291 GNKYFRHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWF--IGLEVEHIDDRNMCC 349 (370)
Q Consensus 291 ~~~Yp~Y~~G~~YvlSrdla~~I~~~~~~l~~~~~EDV~lG~~l--~gL~v~~id~~~fc~ 349 (370)
....+..+.|++-++.++++..+---. .....||+.++.-+ .|..+.++++.....
T Consensus 155 ~~~~~~~~~g~~~~~rr~~~~~vgg~~---~~~~~ED~~l~~rl~~~G~~~~~~~~~~v~~ 212 (232)
T cd06437 155 STGLFFNFNGTAGVWRKECIEDAGGWN---HDTLTEDLDLSYRAQLKGWKFVYLDDVVVPA 212 (232)
T ss_pred hcCCeEEeccchhhhhHHHHHHhCCCC---CCcchhhHHHHHHHHHCCCeEEEeccceeee
Confidence 011111235666678888887763211 12347999998777 466677777655443
No 45
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=76.79 E-value=14 Score=34.96 Aligned_cols=127 Identities=9% Similarity=-0.008 Sum_probs=65.2
Q ss_pred HHHHHHhcCCceEEEEecCceeecHHHHHHHHhhcCCCC-ce-EEEE-eec-CcccccCC---CccccCCccccCCC-CC
Q 017533 221 FFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKP-RV-YIGC-MKS-GPVLSQKN---VKYHEPEYWKFGEE-GN 292 (370)
Q Consensus 221 ~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~-~l-YiG~-~~~-~pv~rd~~---~K~~~pe~w~f~y~-~~ 292 (370)
++++|.+ .+++|++..|||+.+..+.|...+......+ .+ .+|. +.. ......+. ..+..+. +..... ..
T Consensus 65 Gi~~a~~-~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 142 (281)
T TIGR01556 65 GLDASFR-RGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRGTSRRLPAIHLDGLLLRQ-ISLDGLTTP 142 (281)
T ss_pred HHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCCCcccCCceeecccceee-ecccccCCc
Confidence 4556653 3789999999999999888887776554322 22 2232 111 10000000 0000000 000000 00
Q ss_pred ccCccccCCeeeecHHHHHHHHHhCCCcCCCCcchHHHHHHH--hcCCCeEecCCCceeC
Q 017533 293 KYFRHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWF--IGLEVEHIDDRNMCCQ 350 (370)
Q Consensus 293 ~Yp~Y~~G~~YvlSrdla~~I~~~~~~l~~~~~EDV~lG~~l--~gL~v~~id~~~fc~~ 350 (370)
.-..++.++|.++++++++.+---.+.+ .+..||+-+..=+ .|..+..+++..+.|.
T Consensus 143 ~~~~~~~~sg~li~~~~~~~iG~fde~~-fi~~~D~e~~~R~~~~G~~i~~~~~~~~~H~ 201 (281)
T TIGR01556 143 QKTSFLISSGCLITREVYQRLGMMDEEL-FIDHVDTEWSLRAQNYGIPLYIDPDIVLEHR 201 (281)
T ss_pred eeccEEEcCcceeeHHHHHHhCCccHhh-cccchHHHHHHHHHHCCCEEEEeCCEEEEEe
Confidence 1112444556689999998885422222 2346888776544 4666666666666653
No 46
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=76.27 E-value=33 Score=27.31 Aligned_cols=36 Identities=8% Similarity=0.044 Sum_probs=26.9
Q ss_pred HHHHHHHhcCCceEEEEecCceeecHHHHHHHHhhc
Q 017533 220 IFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRH 255 (370)
Q Consensus 220 ~~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~ 255 (370)
..+..+....+.+|++-+|+|..+..+.+...+..+
T Consensus 67 ~~~~~~~~~~~~d~v~~~d~D~~~~~~~~~~~~~~~ 102 (156)
T cd00761 67 AARNAGLKAARGEYILFLDADDLLLPDWLERLVAEL 102 (156)
T ss_pred HHHHHHHHHhcCCEEEEECCCCccCccHHHHHHHHH
Confidence 344445555589999999999999998888874443
No 47
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=73.69 E-value=41 Score=29.95 Aligned_cols=92 Identities=11% Similarity=0.018 Sum_probs=51.1
Q ss_pred HHHHHhcCCceEEEEecCceeecHHHHHHHHhh-cCCCCceEEEEe-ecCcccccCCCcc--ccC-CccccC-CCCCccC
Q 017533 222 FSTAVAKWDADFYVKVDDDVHVNLGMLATTLSR-HRSKPRVYIGCM-KSGPVLSQKNVKY--HEP-EYWKFG-EEGNKYF 295 (370)
Q Consensus 222 ~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~-~~~~~~lYiG~~-~~~pv~rd~~~K~--~~p-e~w~f~-y~~~~Yp 295 (370)
+..+.+....+|++.+|+|..+.++.|..++.. ..+...+..|.. ...... .....+ +.+ ....+. .....-.
T Consensus 70 ~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (224)
T cd06442 70 YIEGFKAARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSRYVEGGGV-EGWGLKRKLISRGANLLARLLLGRKV 148 (224)
T ss_pred HHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEeeeecCCcc-CCCcHHHHHHHHHHHHHHHHHcCCCC
Confidence 333444445699999999999999988888886 345556666642 211110 000000 000 000000 0001123
Q ss_pred ccccCCeeeecHHHHHHHH
Q 017533 296 RHATGQIYAISKDLATYIS 314 (370)
Q Consensus 296 ~Y~~G~~YvlSrdla~~I~ 314 (370)
..++|++.+++++++..+.
T Consensus 149 ~~~~~~~~~~~r~~~~~ig 167 (224)
T cd06442 149 SDPTSGFRAYRREVLEKLI 167 (224)
T ss_pred CCCCCccchhhHHHHHHHh
Confidence 3578888899999999987
No 48
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=73.22 E-value=13 Score=37.48 Aligned_cols=84 Identities=12% Similarity=0.240 Sum_probs=52.7
Q ss_pred HHHHHHHhcCCceEEEEecCceeecHH---HHHHHHhhcCCCCceEEEEeecCcccccCCCccccCCccccCCCCCccC-
Q 017533 220 IFFSTAVAKWDADFYVKVDDDVHVNLG---MLATTLSRHRSKPRVYIGCMKSGPVLSQKNVKYHEPEYWKFGEEGNKYF- 295 (370)
Q Consensus 220 ~~~~wa~~~~~a~F~lKvDDDvfVnl~---~L~~~L~~~~~~~~lYiG~~~~~pv~rd~~~K~~~pe~w~f~y~~~~Yp- 295 (370)
.++.|+.+..++++++.+|||..+.++ -+.+.|..+...++++ |+.+-. +.+.+..... + +...|.
T Consensus 87 ~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~--~ISa~N---dnG~~~~~~~----~-~~~lyrs 156 (334)
T cd02514 87 WALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLW--CISAWN---DNGKEHFVDD----T-PSLLYRT 156 (334)
T ss_pred HHHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEE--EEEeec---cCCcccccCC----C-cceEEEe
Confidence 366666655679999999999999998 5566666666666665 332100 1111111100 0 122333
Q ss_pred ccccCCeeeecHHHHHHH
Q 017533 296 RHATGQIYAISKDLATYI 313 (370)
Q Consensus 296 ~Y~~G~~YvlSrdla~~I 313 (370)
.|+.|.|+++.+++-..+
T Consensus 157 ~ff~glGWml~r~~W~e~ 174 (334)
T cd02514 157 DFFPGLGWMLTRKLWKEL 174 (334)
T ss_pred cCCCchHHHHHHHHHHHh
Confidence 567899999999998887
No 49
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=70.90 E-value=1.2e+02 Score=33.46 Aligned_cols=132 Identities=16% Similarity=0.191 Sum_probs=74.6
Q ss_pred cchhHHHHHHHHHHhcCCceEEEEecCceeecHHHHHHHHhhcCCCCceE-EEEee----cCcccccCCCccccCCcc-c
Q 017533 213 ELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVY-IGCMK----SGPVLSQKNVKYHEPEYW-K 286 (370)
Q Consensus 213 nLt~Kt~~~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~~lY-iG~~~----~~pv~rd~~~K~~~pe~w-~ 286 (370)
|.-.|.- .++.+.+..+.+|++..|.|+.+..+.|...+......+++- +++.. ..+..++-......|.+. .
T Consensus 212 n~~~KAg-nLN~al~~a~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~~~ 290 (713)
T TIGR03030 212 NVHAKAG-NINNALKHTDGELILIFDADHVPTRDFLQRTVGWFVEDPKLFLVQTPHFFVSPDPIERNLGTFRRMPNENEL 290 (713)
T ss_pred CCCCChH-HHHHHHHhcCCCEEEEECCCCCcChhHHHHHHHHHHhCCCEEEEeCCeeccCCCHHhhhhHHHHHhhhHHHH
Confidence 3345643 467777778899999999999999999988887764444442 11111 111111100000001000 0
Q ss_pred c-C--CCCC--ccCccccCCeeeecHHHHHHHHHhCCCcCCCCcchHHHHHHHh--cCCCeEecCCCce
Q 017533 287 F-G--EEGN--KYFRHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWFI--GLEVEHIDDRNMC 348 (370)
Q Consensus 287 f-~--y~~~--~Yp~Y~~G~~YvlSrdla~~I~~~~~~l~~~~~EDV~lG~~l~--gL~v~~id~~~fc 348 (370)
| + .++. .-..++.|.+.++.++++..+---. .....||..+|.-+. |..+.++++....
T Consensus 291 f~~~i~~g~~~~~~~~~~Gs~~~iRR~al~~iGGf~---~~~vtED~~l~~rL~~~G~~~~y~~~~~~~ 356 (713)
T TIGR03030 291 FYGLIQDGNDFWNAAFFCGSAAVLRREALDEIGGIA---GETVTEDAETALKLHRRGWNSAYLDRPLIA 356 (713)
T ss_pred HHHHHHHHHhhhCCeeecCceeEEEHHHHHHcCCCC---CCCcCcHHHHHHHHHHcCCeEEEecccccc
Confidence 0 0 0000 1123567999999999998774211 122479999998874 5666677765554
No 50
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=70.49 E-value=6.6 Score=37.99 Aligned_cols=51 Identities=20% Similarity=0.171 Sum_probs=37.5
Q ss_pred cCCeeeecHHHHHHHHHhCC-Cc---CCCCcchHHHHHHHhcCCCeEecCCCcee
Q 017533 299 TGQIYAISKDLATYISINQP-IL---HKFANEDVSLGSWFIGLEVEHIDDRNMCC 349 (370)
Q Consensus 299 ~G~~YvlSrdla~~I~~~~~-~l---~~~~~EDV~lG~~l~gL~v~~id~~~fc~ 349 (370)
+|+|++||..||+.|..... .+ +.+.--|--+..|+..++|....+.+|..
T Consensus 12 GGgG~~iS~pLa~~L~~~~d~C~~r~~~~~g~D~~i~~C~~~lgv~LT~e~g~hQ 66 (255)
T PF04646_consen 12 GGGGFAISYPLAKALAKMQDDCIERYPHLYGGDQRIQACIAELGVPLTKEPGFHQ 66 (255)
T ss_pred cCceeEEcHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCceecCCcee
Confidence 89999999999999998532 22 33345788899999777766655555543
No 51
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=70.10 E-value=26 Score=30.71 Aligned_cols=80 Identities=16% Similarity=0.062 Sum_probs=49.2
Q ss_pred CCceEEEEecCceeecHHHHHHHHhhcCCCCceEEEEeecCcccccCCCcccc---CCcccc-------CCCCCccCccc
Q 017533 229 WDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKSGPVLSQKNVKYHE---PEYWKF-------GEEGNKYFRHA 298 (370)
Q Consensus 229 ~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~~lYiG~~~~~pv~rd~~~K~~~---pe~w~f-------~y~~~~Yp~Y~ 298 (370)
.+.+|++.+|.|+.+.++.|..++..+.....+..|+....+ +...|.- ...|.+ +...-.-+.++
T Consensus 80 ~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~~v~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (183)
T cd06438 80 DDPDAVVVFDADNLVDPNALEELNARFAAGARVVQAYYNSKN----PDDSWITRLYAFAFLVFNRLRPLGRSNLGLSCQL 155 (183)
T ss_pred CCCCEEEEEcCCCCCChhHHHHHHHHHhhCCCeeEEEEeeeC----CccCHHHHHHHHHHHHHHHHHHHHHHHcCCCeee
Confidence 468999999999999999888888877655667667643211 1111210 000000 00000223357
Q ss_pred cCCeeeecHHHHHH
Q 017533 299 TGQIYAISKDLATY 312 (370)
Q Consensus 299 ~G~~YvlSrdla~~ 312 (370)
.|.++++++++++.
T Consensus 156 ~G~~~~~rr~~l~~ 169 (183)
T cd06438 156 GGTGMCFPWAVLRQ 169 (183)
T ss_pred cCchhhhHHHHHHh
Confidence 89999999999988
No 52
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=69.39 E-value=8.4 Score=35.98 Aligned_cols=119 Identities=13% Similarity=0.097 Sum_probs=65.1
Q ss_pred CCceEEEEecCceeecHHHHHHHHhhcCCCCce--EEEEeec-Cc----ccccCCCccccCCc-cccCCCCCccCccccC
Q 017533 229 WDADFYVKVDDDVHVNLGMLATTLSRHRSKPRV--YIGCMKS-GP----VLSQKNVKYHEPEY-WKFGEEGNKYFRHATG 300 (370)
Q Consensus 229 ~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~~l--YiG~~~~-~p----v~rd~~~K~~~pe~-w~f~y~~~~Yp~Y~~G 300 (370)
.+.+|++.+|.|+.+..+.|...+..+...|++ ..|.+.. ++ ..+-..-.|..... .+-....-.+...+.|
T Consensus 72 a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~vg~v~g~~~~~~~~~~~~~~~q~~ey~~~~~~~~~~~s~~g~~~~~~G 151 (244)
T cd04190 72 DDPEFILLVDADTKFDPDSIVQLYKAMDKDPEIGGVCGEIHPMGKKQGPLVMYQVFEYAISHWLDKAFESVFGFVTCLPG 151 (244)
T ss_pred CCCCEEEEECCCCcCCHhHHHHHHHHHHhCCCEEEEEeeeEEcCCcchhHHHhHheehhhhhhhcccHHHcCCceEECCC
Confidence 489999999999999999988888776444543 2233211 11 00000000000000 0000001134556789
Q ss_pred CeeeecHHHHHHHHHhCCC----------c-------CCCCcchHHHHHHH--hcCCCeE--ecCCCc
Q 017533 301 QIYAISKDLATYISINQPI----------L-------HKFANEDVSLGSWF--IGLEVEH--IDDRNM 347 (370)
Q Consensus 301 ~~YvlSrdla~~I~~~~~~----------l-------~~~~~EDV~lG~~l--~gL~v~~--id~~~f 347 (370)
+++++.+++++.+...... + .....||..++..+ .|..+.+ .++...
T Consensus 152 ~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ED~~l~~~l~~~G~~~~~~~~~~a~~ 219 (244)
T cd04190 152 CFSMYRIEALKGDNGGKGPLLDYAYLTNTVDSLHKKNNLDLGEDRILCTLLLKAGPKRKYLYVPGAVA 219 (244)
T ss_pred ceEEEEehhhcCCccccccchhhccccCcccchHHHHHHhHhcccceeHHHhccCCccEEEEecccEE
Confidence 9999999987765322110 0 12247999998877 4556666 444333
No 53
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=68.64 E-value=86 Score=27.89 Aligned_cols=89 Identities=12% Similarity=-0.002 Sum_probs=52.5
Q ss_pred CceEEEEEeecCCCCChhHHHHHHHHHhhCCCE-EEeccccccccchhHHHHHHHHHHhcCCceEEEEecCceeecHHHH
Q 017533 170 KGIIIRFMIGHSATSNSILDKAIDSEDAQHKDF-LRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGML 248 (370)
Q Consensus 170 ~~i~v~FVvG~s~~~~~~~~~~I~~E~~~~~DI-L~ld~~Dsy~nLt~Kt~~~~~wa~~~~~a~F~lKvDDDvfVnl~~L 248 (370)
..+.++.|-+.|.. .....+++..++++.. ..+....+. . +. .++..+.+....+|++.+|+|..+.++.|
T Consensus 29 ~~~eiivvdd~S~D---~t~~~~~~~~~~~~~~i~~i~~~~n~-G---~~-~a~~~g~~~a~gd~i~~ld~D~~~~~~~l 100 (211)
T cd04188 29 FSYEIIVVDDGSKD---GTAEVARKLARKNPALIRVLTLPKNR-G---KG-GAVRAGMLAARGDYILFADADLATPFEEL 100 (211)
T ss_pred CCEEEEEEeCCCCC---chHHHHHHHHHhCCCcEEEEEcccCC-C---cH-HHHHHHHHHhcCCEEEEEeCCCCCCHHHH
Confidence 34567666666542 2333444445556654 223332221 1 22 23334444456799999999999999999
Q ss_pred HHHHhh-cCCCCceEEEEe
Q 017533 249 ATTLSR-HRSKPRVYIGCM 266 (370)
Q Consensus 249 ~~~L~~-~~~~~~lYiG~~ 266 (370)
..++.. ......+.+|..
T Consensus 101 ~~l~~~~~~~~~~~v~g~r 119 (211)
T cd04188 101 EKLEEALKTSGYDIAIGSR 119 (211)
T ss_pred HHHHHHHhccCCcEEEEEe
Confidence 888887 334456777753
No 54
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=68.51 E-value=1e+02 Score=30.42 Aligned_cols=134 Identities=7% Similarity=0.038 Sum_probs=70.6
Q ss_pred ceEEEEEeecCCCCChhHHHHHHHHHhhCCC-EEEeccccccccchhHHHHHHHHHHhcCCceEEEEecCceeecHHHHH
Q 017533 171 GIIIRFMIGHSATSNSILDKAIDSEDAQHKD-FLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLA 249 (370)
Q Consensus 171 ~i~v~FVvG~s~~~~~~~~~~I~~E~~~~~D-IL~ld~~Dsy~nLt~Kt~~~~~wa~~~~~a~F~lKvDDDvfVnl~~L~ 249 (370)
.+.+++|-..|. |++ ...+++-.+++++ ++.+....++ -|. .++..+.++.+.+|++.+|.|.-.+++.+.
T Consensus 38 ~~EIIvVDDgS~--D~T-~~il~~~~~~~~~~v~~i~~~~n~----G~~-~A~~~G~~~A~gd~vv~~DaD~q~~p~~i~ 109 (325)
T PRK10714 38 EYEILLIDDGSS--DNS-AEMLVEAAQAPDSHIVAILLNRNY----GQH-SAIMAGFSHVTGDLIITLDADLQNPPEEIP 109 (325)
T ss_pred CEEEEEEeCCCC--CcH-HHHHHHHHhhcCCcEEEEEeCCCC----CHH-HHHHHHHHhCCCCEEEEECCCCCCCHHHHH
Confidence 467778876664 232 2223332333444 4434333333 122 123344445678999999999999999998
Q ss_pred HHHhhcCCCCceEEEEeec--CcccccCCCccccCCccccCCCCCccCccccCCeeeecHHHHHHHHH
Q 017533 250 TTLSRHRSKPRVYIGCMKS--GPVLSQKNVKYHEPEYWKFGEEGNKYFRHATGQIYAISKDLATYISI 315 (370)
Q Consensus 250 ~~L~~~~~~~~lYiG~~~~--~pv~rd~~~K~~~pe~w~f~y~~~~Yp~Y~~G~~YvlSrdla~~I~~ 315 (370)
.+++......++..|.... .+..+.-.++.+.---..+ .+..++.+.+| .-++++++++.+..
T Consensus 110 ~l~~~~~~~~DvV~~~r~~~~~~~~r~~~s~~~~~l~~~~--~g~~~~d~~~g-fr~~~r~~~~~l~~ 174 (325)
T PRK10714 110 RLVAKADEGYDVVGTVRQNRQDSWFRKTASKMINRLIQRT--TGKAMGDYGCM-LRAYRRHIVDAMLH 174 (325)
T ss_pred HHHHHHHhhCCEEEEEEcCCCCcHHHHHHHHHHHHHHHHH--cCCCCCCCCcC-eEEEcHHHHHHHHH
Confidence 8888764434555454321 2222222222221100000 12344443333 45899999999864
No 55
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=65.95 E-value=64 Score=28.60 Aligned_cols=105 Identities=15% Similarity=0.088 Sum_probs=58.4
Q ss_pred HHHHHhcCCceEEEEecCceeecHHHHHHHHhhcCCCCceEEEEee----c-CcccccCCCccccCCccccCCCCCccCc
Q 017533 222 FSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMK----S-GPVLSQKNVKYHEPEYWKFGEEGNKYFR 296 (370)
Q Consensus 222 ~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~~lYiG~~~----~-~pv~rd~~~K~~~pe~w~f~y~~~~Yp~ 296 (370)
+..+.+....+|++.+|+|..+..+.|...+......+ ..+|... . +...+....++.. .. .....+
T Consensus 64 ~n~g~~~a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~ 135 (221)
T cd02522 64 MNAGAAAARGDWLLFLHADTRLPPDWDAAIIETLRADG-AVAGAFRLRFDDPGPRLRLLELGANL----RS---RLFGLP 135 (221)
T ss_pred HHHHHHhccCCEEEEEcCCCCCChhHHHHHHHHhhcCC-cEEEEEEeeecCCccchhhhhhcccc----ee---cccCCC
Confidence 34455556689999999999999888888766654433 3334321 1 1110000001111 10 001111
Q ss_pred cccCCeeeecHHHHHHHHHhCCCcCCCCcchHHHHHHHhcCC
Q 017533 297 HATGQIYAISKDLATYISINQPILHKFANEDVSLGSWFIGLE 338 (370)
Q Consensus 297 Y~~G~~YvlSrdla~~I~~~~~~l~~~~~EDV~lG~~l~gL~ 338 (370)
..+.+.++++++...+-.-.... ..||.-++.-+...+
T Consensus 136 -~~~~~~~~r~~~~~~~G~fd~~~---~~ED~d~~~r~~~~G 173 (221)
T cd02522 136 -YGDQGLFIRRELFEELGGFPELP---LMEDVELVRRLRRRG 173 (221)
T ss_pred -cCCceEEEEHHHHHHhCCCCccc---cccHHHHHHHHHhCC
Confidence 24567899999887775333222 789998886664443
No 56
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=64.46 E-value=1.4e+02 Score=28.65 Aligned_cols=164 Identities=12% Similarity=0.072 Sum_probs=88.1
Q ss_pred cCceEEEEEeecCCCCChhHHHHHHHHHhhCCCE-EE-eccccccccchhHHHHHHHHHHhcCCceEEEEecCceeecHH
Q 017533 169 EKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDF-LR-LEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLG 246 (370)
Q Consensus 169 ~~~i~v~FVvG~s~~~~~~~~~~I~~E~~~~~DI-L~-ld~~Dsy~nLt~Kt~~~~~wa~~~~~a~F~lKvDDDvfVnl~ 246 (370)
...+.+++|-+.+. ......|.+-.+.++-+ ++ .+.....-+ .-.+..-+.+....+|++..|.|+++..+
T Consensus 32 ~~~~eiIvvd~~s~---~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~----~a~arN~g~~~A~~d~l~flD~D~i~~~~ 104 (281)
T PF10111_consen 32 DPDFEIIVVDDGSS---DEFDEELKKLCEKNGFIRYIRHEDNGEPFS----RAKARNIGAKYARGDYLIFLDADCIPSPD 104 (281)
T ss_pred CCCEEEEEEECCCc---hhHHHHHHHHHhccCceEEEEcCCCCCCcC----HHHHHHHHHHHcCCCEEEEEcCCeeeCHH
Confidence 45667777766553 33445666666666655 22 221111112 12234445556689999999999999999
Q ss_pred HHHHHHh---hcCCCC-ceEEEE-ee-cCc----ccccCCCcccc--CCccccCCCCCcc-CccccCCeeeecHHHHHHH
Q 017533 247 MLATTLS---RHRSKP-RVYIGC-MK-SGP----VLSQKNVKYHE--PEYWKFGEEGNKY-FRHATGQIYAISKDLATYI 313 (370)
Q Consensus 247 ~L~~~L~---~~~~~~-~lYiG~-~~-~~p----v~rd~~~K~~~--pe~w~f~y~~~~Y-p~Y~~G~~YvlSrdla~~I 313 (370)
.+...+. .....+ .++++- .. ..+ ........|.. .+. ......+.+ .....|++.+++++.-..|
T Consensus 105 ~i~~~~~~~~~l~~~~~~~~~~p~~yl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~i~r~~f~~i 183 (281)
T PF10111_consen 105 FIEKLLNHVKKLDKNPNAFLVYPCLYLSEEGSEKFYSQFKNLWDHEFLES-FISGKNSLWEFIAFASSCFLINREDFLEI 183 (281)
T ss_pred HHHHHHHHHHHHhcCCCceEEEeeeeccchhhHHHhhcchhcchHHHHHH-HhhccccccccccccceEEEEEHHHHHHh
Confidence 9999888 443322 333332 21 111 00000000100 000 000001111 1234569999999987777
Q ss_pred HHhCCCcCCCCcchHHHHHHHhcCCCe
Q 017533 314 SINQPILHKFANEDVSLGSWFIGLEVE 340 (370)
Q Consensus 314 ~~~~~~l~~~~~EDV~lG~~l~gL~v~ 340 (370)
--.-+....+-.||.-++.=+...+..
T Consensus 184 GGfDE~f~G~G~ED~D~~~RL~~~~~~ 210 (281)
T PF10111_consen 184 GGFDERFRGWGYEDIDFGYRLKKAGYK 210 (281)
T ss_pred CCCCccccCCCcchHHHHHHHHHcCCc
Confidence 554455556679999999777555433
No 57
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=64.34 E-value=73 Score=28.59 Aligned_cols=167 Identities=13% Similarity=0.072 Sum_probs=83.2
Q ss_pred eEEEEEeecCCCCChhHHHHHHHHHhhCCCEEEeccccccccchhHHHHHHHHHHhcCCceEEEEecCceeecHHHHHHH
Q 017533 172 IIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATT 251 (370)
Q Consensus 172 i~v~FVvG~s~~~~~~~~~~I~~E~~~~~DIL~ld~~Dsy~nLt~Kt~~~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~ 251 (370)
..+++|...+. +.....+ .+...+..+....- + + ..|.. .+..+....+.+|++.+|+|+.+..+.|...
T Consensus 29 ~eiivvdd~s~---d~~~~~l-~~~~~~~~~~v~~~-~---~-~g~~~-a~n~g~~~a~~d~v~~lD~D~~~~~~~l~~l 98 (235)
T cd06434 29 LEIIVVTDGDD---EPYLSIL-SQTVKYGGIFVITV-P---H-PGKRR-ALAEGIRHVTTDIVVLLDSDTVWPPNALPEM 98 (235)
T ss_pred CEEEEEeCCCC---hHHHHHH-HhhccCCcEEEEec-C---C-CChHH-HHHHHHHHhCCCEEEEECCCceeChhHHHHH
Confidence 45556655443 2223333 34455666655541 1 1 22432 3344445568999999999999999999998
Q ss_pred HhhcCCCCceE--EEEeec-Cc---ccccCCCccccCCcccc---CCCCCccCccccCCeeeecHHHHHHHHHhCC----
Q 017533 252 LSRHRSKPRVY--IGCMKS-GP---VLSQKNVKYHEPEYWKF---GEEGNKYFRHATGQIYAISKDLATYISINQP---- 318 (370)
Q Consensus 252 L~~~~~~~~lY--iG~~~~-~p---v~rd~~~K~~~pe~w~f---~y~~~~Yp~Y~~G~~YvlSrdla~~I~~~~~---- 318 (370)
+.... .+.+- .|.... .+ ........++.-..+.+ .... .-...++|...++.++++..+.-...
T Consensus 99 ~~~~~-~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~G~~~~~rr~~l~~~~~~~~~~~~ 176 (235)
T cd06434 99 LKPFE-DPKVGGVGTNQRILRPRDSKWSFLAAEYLERRNEEIRAAMSYD-GGVPCLSGRTAAYRTEILKDFLFLEEFTNE 176 (235)
T ss_pred HHhcc-CCCEeEEcCceEeecCcccHHHHHHHHHHHHHHHHHHHHHhhC-CCEEEccCcHHHHHHHHHhhhhhHHHhhhh
Confidence 88775 33331 111110 00 00000000000000000 0000 01123567788888888876543211
Q ss_pred ---CcCCCCcchHHHHHHHh--cCCCeEecCCCceeC
Q 017533 319 ---ILHKFANEDVSLGSWFI--GLEVEHIDDRNMCCQ 350 (370)
Q Consensus 319 ---~l~~~~~EDV~lG~~l~--gL~v~~id~~~fc~~ 350 (370)
..+....||..++.-+. |..+....+...++.
T Consensus 177 ~~~~~~~~~~eD~~l~~~~~~~g~~~~~~~~~~~~~~ 213 (235)
T cd06434 177 TFMGRRLNAGDDRFLTRYVLSHGYKTVYQYTSEAYTE 213 (235)
T ss_pred hhcCCCCCcCchHHHHHHHHHCCCeEEEecCCeEEEE
Confidence 11334679999987664 455555555444443
No 58
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=61.85 E-value=1.5e+02 Score=28.25 Aligned_cols=127 Identities=17% Similarity=0.153 Sum_probs=71.3
Q ss_pred cchhHHHHHHHHHHhc-CCceEEEEecCceeecHHHHHHHHhhcCCCCceEEEEeecCcccccCCC---cc-------cc
Q 017533 213 ELSAKTKIFFSTAVAK-WDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKSGPVLSQKNV---KY-------HE 281 (370)
Q Consensus 213 nLt~Kt~~~~~wa~~~-~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~~lYiG~~~~~pv~rd~~~---K~-------~~ 281 (370)
|.-.|+-..-...... .+.+|++-.|.|+.+.++.|...+......|++ |-+.......+..+ ++ +.
T Consensus 77 ~~g~Kag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~v--g~vq~~~~~~n~~~~~~~~~~~~~~~~~ 154 (254)
T cd04191 77 NTGRKAGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEANPRA--GIIQTAPKLIGAETLFARLQQFANRLYG 154 (254)
T ss_pred CCCccHHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCCE--EEEeCCceeECCCCHHHHHHHHHHHHHH
Confidence 3334554443333222 467999999999999999999999876444443 33321111111111 00 00
Q ss_pred C------CccccCCCCCccCccccCCeeeecHHHHHHHHHhC-----CCc-CCCCcchHHHHHHHh--cCCCeEecCCCc
Q 017533 282 P------EYWKFGEEGNKYFRHATGQIYAISKDLATYISINQ-----PIL-HKFANEDVSLGSWFI--GLEVEHIDDRNM 347 (370)
Q Consensus 282 p------e~w~f~y~~~~Yp~Y~~G~~YvlSrdla~~I~~~~-----~~l-~~~~~EDV~lG~~l~--gL~v~~id~~~f 347 (370)
+ ..|. ..-.+|.|...++.++.+..+..-. .-. ...-.||..+|..+. |..+...++...
T Consensus 155 ~~~~~~~~~~~------~~~~~~~G~~~~~Rr~al~~~~~~~~i~g~g~~~~~~l~eD~~l~~~~~~~G~ri~~~~~~~~ 228 (254)
T cd04191 155 PVFGRGLAAWQ------GGEGNYWGHNAIIRVAAFMEHCALPVLPGRPPFGGHILSHDFVEAALMRRAGWEVRLAPDLEG 228 (254)
T ss_pred HHHHHHHHHhc------CCccCccceEEEEEHHHHHHhcCCccccCCCCCCCCeecHHHHHHHHHHHcCCEEEEccCCcc
Confidence 0 0011 0113467999999999887764211 111 234689999998874 556666655443
No 59
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=60.32 E-value=1.4e+02 Score=27.44 Aligned_cols=156 Identities=12% Similarity=0.085 Sum_probs=79.9
Q ss_pred ceEEEEEeecCCCCChhHHHHHHHHHhhCCC--EEEeccccccccchhHHHHHHHHHHhcCCceEEEEecCceeecHHHH
Q 017533 171 GIIIRFMIGHSATSNSILDKAIDSEDAQHKD--FLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGML 248 (370)
Q Consensus 171 ~i~v~FVvG~s~~~~~~~~~~I~~E~~~~~D--IL~ld~~Dsy~nLt~Kt~~~~~wa~~~~~a~F~lKvDDDvfVnl~~L 248 (370)
.+.+++|-..|. +++ ...+.+-.++|++ +....... |.- | -.++..+......+|++.+|+|..++++.|
T Consensus 40 ~~eiivvDdgS~--D~t-~~i~~~~~~~~~~~~v~~~~~~~---n~G-~-~~a~n~g~~~a~g~~i~~lD~D~~~~~~~l 111 (243)
T PLN02726 40 DFEIIVVDDGSP--DGT-QDVVKQLQKVYGEDRILLRPRPG---KLG-L-GTAYIHGLKHASGDFVVIMDADLSHHPKYL 111 (243)
T ss_pred CeEEEEEeCCCC--CCH-HHHHHHHHHhcCCCcEEEEecCC---CCC-H-HHHHHHHHHHcCCCEEEEEcCCCCCCHHHH
Confidence 567777766554 222 2233333344543 22232222 211 1 124445555567899999999999999988
Q ss_pred HHHHhhcC-CCCceEEEEee--cCcccccCCCcc---ccCC------ccccCCCCCccCccccCCeeeecHHHHHHHHHh
Q 017533 249 ATTLSRHR-SKPRVYIGCMK--SGPVLSQKNVKY---HEPE------YWKFGEEGNKYFRHATGQIYAISKDLATYISIN 316 (370)
Q Consensus 249 ~~~L~~~~-~~~~lYiG~~~--~~pv~rd~~~K~---~~pe------~w~f~y~~~~Yp~Y~~G~~YvlSrdla~~I~~~ 316 (370)
..++.... ....+..|... .+.. .+..| ..+. .+.+ +. .-...+|++.++++++++.+...
T Consensus 112 ~~l~~~~~~~~~~~v~g~r~~~~~~~---~~~~~~r~~~~~~~~~~~~~~~---~~-~~~d~~g~~~~~rr~~~~~i~~~ 184 (243)
T PLN02726 112 PSFIKKQRETGADIVTGTRYVKGGGV---HGWDLRRKLTSRGANVLAQTLL---WP-GVSDLTGSFRLYKRSALEDLVSS 184 (243)
T ss_pred HHHHHHHHhcCCcEEEEccccCCCCc---CCccHHHHHHHHHHHHHHHHHh---CC-CCCcCCCcccceeHHHHHHHHhh
Confidence 88887653 23456666532 1100 00001 0000 0000 11 11235788889999999999753
Q ss_pred CCCcCCCCcchHHHHHHH--hcCCCeEec
Q 017533 317 QPILHKFANEDVSLGSWF--IGLEVEHID 343 (370)
Q Consensus 317 ~~~l~~~~~EDV~lG~~l--~gL~v~~id 343 (370)
.... .| ..|+-+...+ .|..+..++
T Consensus 185 ~~~~-~~-~~~~el~~~~~~~g~~i~~vp 211 (243)
T PLN02726 185 VVSK-GY-VFQMEIIVRASRKGYRIEEVP 211 (243)
T ss_pred ccCC-Cc-EEehHHHHHHHHcCCcEEEeC
Confidence 3221 22 2344444333 566666554
No 60
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=56.95 E-value=2.7e+02 Score=29.65 Aligned_cols=112 Identities=13% Similarity=0.018 Sum_probs=60.8
Q ss_pred CceEEEEecCceeecHHHHHHHHhhcCCCCceEEEEeecCcccccCCCcc----ccCCccc-c--CCC---CCccCcccc
Q 017533 230 DADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKSGPVLSQKNVKY----HEPEYWK-F--GEE---GNKYFRHAT 299 (370)
Q Consensus 230 ~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~~lYiG~~~~~pv~rd~~~K~----~~pe~w~-f--~y~---~~~Yp~Y~~ 299 (370)
++++++..|-|..+.++.|..+- .+.+..++.-.-+...+ .+.+.| |.-+... + ..+ .-.-+-.+.
T Consensus 158 ~~d~vvi~DAD~~v~Pd~Lr~~~-~~~~~~~~VQ~pv~~~~---~~~~~~~ag~y~~ef~~~~~~~l~~r~~LG~~~~~~ 233 (504)
T PRK14716 158 RFAIIVLHDAEDVIHPLELRLYN-YLLPRHDFVQLPVFSLP---RDWGEWVAGTYMDEFAESHLKDLPVREALGGLIPSA 233 (504)
T ss_pred CcCEEEEEcCCCCcCccHHHHHH-hhcCCCCEEecceeccC---CchhHHHHHHHHHHHHHHHHHHHHHHHhcCCccccC
Confidence 46999999999999999987543 33233322110011110 111111 1000000 0 000 001122378
Q ss_pred CCeeeecHHHHHHHHHhC---CCcCCCCcchHHHHHHH--hcCCCeEecCC
Q 017533 300 GQIYAISKDLATYISINQ---PILHKFANEDVSLGSWF--IGLEVEHIDDR 345 (370)
Q Consensus 300 G~~YvlSrdla~~I~~~~---~~l~~~~~EDV~lG~~l--~gL~v~~id~~ 345 (370)
|.++++++++++.+.... +.-...--||.-+|.-+ .|..+...++.
T Consensus 234 Gtg~afRR~aLe~l~~~~GG~~fd~~sLTED~dLglRL~~~G~rv~y~p~a 284 (504)
T PRK14716 234 GVGTAFSRRALERLAAERGGQPFDSDSLTEDYDIGLRLKRAGFRQIFVRVR 284 (504)
T ss_pred CeeEEeEHHHHHHHHhhcCCCCCCCCCcchHHHHHHHHHHCCCEEEEeccc
Confidence 999999999999986422 12234568999999877 46666665544
No 61
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=50.26 E-value=1.3e+02 Score=31.44 Aligned_cols=92 Identities=10% Similarity=0.198 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhc----CCceEEEEecCceeecHHHHHHHHhhc---CCCCceEEEEeecCcccccCCCccccCCccccCC
Q 017533 217 KTKIFFSTAVAK----WDADFYVKVDDDVHVNLGMLATTLSRH---RSKPRVYIGCMKSGPVLSQKNVKYHEPEYWKFGE 289 (370)
Q Consensus 217 Kt~~~~~wa~~~----~~a~F~lKvDDDvfVnl~~L~~~L~~~---~~~~~lYiG~~~~~pv~rd~~~K~~~pe~w~f~y 289 (370)
|.-.-++||... .+++.++-+.||.-|-++=+.-+.... ...+.+| |+..- .|.+...++... .
T Consensus 174 ~IA~HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf~Yf~~~~~ll~~D~sl~--ciSaw---NdnG~~~~~~~~----~ 244 (434)
T PF03071_consen 174 KIARHYKWALSQVFNKFKYSSVIILEDDLEISPDFFEYFSATLPLLENDPSLW--CISAW---NDNGKEHFVDDS----R 244 (434)
T ss_dssp HHHHHHHHHHHHHHHTS--SEEEEEETTEEE-TTHHHHHHHHHHHHHH-TTEE--EEES-----TT-BGGGS-TT-----
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEecCcccCccHHHHHHHHHHHHhcCCCeE--EEEcc---ccCCccccccCC----C
Confidence 344556666652 468899999999999887655444332 2345676 43210 011111122110 0
Q ss_pred CCCcc-CccccCCeeeecHHHHHHHHHhC
Q 017533 290 EGNKY-FRHATGQIYAISKDLATYISINQ 317 (370)
Q Consensus 290 ~~~~Y-p~Y~~G~~YvlSrdla~~I~~~~ 317 (370)
+...| -.|.-|-|++|++++-..+...-
T Consensus 245 ~~~lyRsdffpglGWml~r~~w~el~~~W 273 (434)
T PF03071_consen 245 PSLLYRSDFFPGLGWMLTRELWDELEPKW 273 (434)
T ss_dssp TT-EEEESS---SSEEEEHHHHHHHGGG-
T ss_pred ccceEecccCCchHHHhhHHHHHhhcccC
Confidence 11122 22467999999999988766543
No 62
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=49.87 E-value=75 Score=31.45 Aligned_cols=81 Identities=15% Similarity=0.103 Sum_probs=58.8
Q ss_pred ccCceEEEEEeecCCCCChhHHHHHHHHHhhCCCEEEecccc--ccccchhHHHHHHHHHHhcCCceEEEEecCceeecH
Q 017533 168 REKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIE--GYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNL 245 (370)
Q Consensus 168 ~~~~i~v~FVvG~s~~~~~~~~~~I~~E~~~~~DIL~ld~~D--sy~nLt~Kt~~~~~wa~~~~~a~F~lKvDDDvfVnl 245 (370)
...++.++|+-|++ ..++.|..=.....-++-+++.+ ....-+.--..+..|+.+.|..++++..|-|+|...
T Consensus 35 s~~~~~vi~~~~~~-----~~d~~i~~~i~~~~~~~yl~~~s~~~F~s~~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S~ 109 (346)
T COG4092 35 SSDITMVICLRAHE-----VMDRLIRSYIDPMPRVLYLDFGSPEPFASETICANNGADYSHEKCESNLVLFLDVDCFGSS 109 (346)
T ss_pred ccccEEEEEEecch-----hHHHHHHHHhccccceEEEecCCCccccchhhhhhccchhhhccccccEEEEEeccccccH
Confidence 45566777777664 45677777777777777777543 333323334456778888899999999999999999
Q ss_pred HHHHHHHh
Q 017533 246 GMLATTLS 253 (370)
Q Consensus 246 ~~L~~~L~ 253 (370)
++..+.|.
T Consensus 110 dnF~k~l~ 117 (346)
T COG4092 110 DNFAKMLS 117 (346)
T ss_pred HHHHHHHH
Confidence 99999883
No 63
>PHA01631 hypothetical protein
Probab=48.47 E-value=47 Score=30.35 Aligned_cols=92 Identities=15% Similarity=0.185 Sum_probs=55.0
Q ss_pred hCCCEEEeccccccccchhHHHHHHHHHHh---cCCceEEEEecCceeecHHHHHHHHhhcCCCCceEEEEeecCccccc
Q 017533 198 QHKDFLRLEHIEGYHELSAKTKIFFSTAVA---KWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKSGPVLSQ 274 (370)
Q Consensus 198 ~~~DIL~ld~~Dsy~nLt~Kt~~~~~wa~~---~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~~lYiG~~~~~pv~rd 274 (370)
-+.+|+...-...++. .....++..+++ +-+-|.++.+|.|++|+.-. .. .+.+.+|.=|.. -+
T Consensus 38 ~~~~Ii~~~t~~e~Rr--~RIAk~Ll~Iln~~s~i~DDi~~iIDSDV~ipn~~--~~----~~~~~v~t~CiP---A~-- 104 (176)
T PHA01631 38 YQEKIIWIMTNTEIRW--LRIAKQLLTIVNFAKNIEDDIIAIIDSDLIIPNLR--EI----IPNERVFTPCYW---LY-- 104 (176)
T ss_pred cCCceEEecccchhHH--HHHHHHHHHHHHhhccCCccEEEEeccceEecCcc--cc----ccCCCccceeee---ee--
Confidence 3566766653222222 333444445544 35778889999999997532 11 223345544531 11
Q ss_pred CCCccccCCccccCCCCCccCccccCCeeeecHHHHHHHHH
Q 017533 275 KNVKYHEPEYWKFGEEGNKYFRHATGQIYAISKDLATYISI 315 (370)
Q Consensus 275 ~~~K~~~pe~w~f~y~~~~Yp~Y~~G~~YvlSrdla~~I~~ 315 (370)
.| |.+.+-+||.|.-|++.+..+.++..
T Consensus 105 --~k-----------p~~~v~~FC~sTNf~~pr~~l~~l~~ 132 (176)
T PHA01631 105 --YD-----------WANEIRPFCSGTNYIFRKSLLPYLEY 132 (176)
T ss_pred --ec-----------CCCcEEEEEccccEEeeHHHhHHHHH
Confidence 11 12356688999999999999998865
No 64
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=43.94 E-value=3.6e+02 Score=30.81 Aligned_cols=123 Identities=16% Similarity=0.105 Sum_probs=69.3
Q ss_pred hHHHHHHHHHHhcCCceEEEEecCceeecHHHHHHHHhhcCCCCceEEEEee-------cCcccccCCCccccC-Cc-cc
Q 017533 216 AKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMK-------SGPVLSQKNVKYHEP-EY-WK 286 (370)
Q Consensus 216 ~Kt~~~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~~lYiG~~~-------~~pv~rd~~~K~~~p-e~-w~ 286 (370)
.|.- .++.+.++.+.+|++..|.|..+..+-|...+..+...+++ |.+. .+|..++-+.--..+ +. ..
T Consensus 326 gKAG-nLN~aL~~a~GEyIavlDAD~ip~pdfL~~~V~~f~~dP~V--glVQtp~~f~n~dp~~rnl~~~~~~~~e~~~f 402 (852)
T PRK11498 326 AKAG-NINNALKYAKGEFVAIFDCDHVPTRSFLQMTMGWFLKDKKL--AMMQTPHHFFSPDPFERNLGRFRKTPNEGTLF 402 (852)
T ss_pred chHH-HHHHHHHhCCCCEEEEECCCCCCChHHHHHHHHHHHhCCCe--EEEEcceeccCCchHHHhhHHHhhcccchhHH
Confidence 3443 56777777899999999999999998888877654333333 3221 111111100000001 00 00
Q ss_pred cC--CCCC--ccCccccCCeeeecHHHHHHHHHhCCCcCCCCcchHHHHHHHhc--CCCeEecC
Q 017533 287 FG--EEGN--KYFRHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWFIG--LEVEHIDD 344 (370)
Q Consensus 287 f~--y~~~--~Yp~Y~~G~~YvlSrdla~~I~~~~~~l~~~~~EDV~lG~~l~g--L~v~~id~ 344 (370)
|+ .++. .--.++.|.+.++.++++..+---.. ....||.-++.-+.. -.+.++++
T Consensus 403 y~~iq~g~~~~~a~~~~Gs~aviRReaLeeVGGfd~---~titED~dlslRL~~~Gyrv~yl~~ 463 (852)
T PRK11498 403 YGLVQDGNDMWDATFFCGSCAVIRRKPLDEIGGIAV---ETVTEDAHTSLRLHRRGYTSAYMRI 463 (852)
T ss_pred HHHHHhHHHhhcccccccceeeeEHHHHHHhcCCCC---CccCccHHHHHHHHHcCCEEEEEec
Confidence 00 0000 01245789999999999998843221 124799999988854 44555554
No 65
>smart00786 SHR3_chaperone ER membrane protein SH3. This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) PUBMED:15623581. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=38.95 E-value=26 Score=32.75 Aligned_cols=29 Identities=38% Similarity=0.588 Sum_probs=23.5
Q ss_pred cchhHHHHHHHHHHHHHHHhc------CCCCCCCC
Q 017533 12 STKWIPFVCLFCFALGILFSN------LTWNPPES 40 (370)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~ 40 (370)
+-...+++|-.||++|++|++ -||+.+.+
T Consensus 6 ~~~t~lIl~~tsF~lGvlf~~~pyD~~~Lw~~~~t 40 (196)
T smart00786 6 SFGTALIIGSTSFFLGILFANFPYDYPLLWSPDPT 40 (196)
T ss_pred ccccchhhhhHHHHHHHHHhcCccccchhcCCCCC
Confidence 445679999999999999998 46877654
No 66
>PF08229 SHR3_chaperone: ER membrane protein SH3 ; InterPro: IPR013248 This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) []. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=36.63 E-value=20 Score=33.40 Aligned_cols=30 Identities=37% Similarity=0.633 Sum_probs=24.0
Q ss_pred ccchhHHHHHHHHHHHHHHHhc------CCCCCCCC
Q 017533 11 ISTKWIPFVCLFCFALGILFSN------LTWNPPES 40 (370)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~ 40 (370)
++-+..+++|-.||++|++|++ -||+.+.+
T Consensus 5 ~~~~t~lIi~stsF~LG~lf~~~~yD~~~Lw~~~~t 40 (196)
T PF08229_consen 5 CSFGTGLIICSTSFLLGVLFSNWPYDYPTLWSSPPT 40 (196)
T ss_pred cceeeeeehHhhHHHHHHHHHcccchhHHhcCCCCC
Confidence 3445678999999999999998 46887655
No 67
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=36.04 E-value=4e+02 Score=29.59 Aligned_cols=198 Identities=14% Similarity=0.144 Sum_probs=100.6
Q ss_pred CCCeEEEEEEECCCCCHHH-HHHHHHHhccCchhhHhhhccCceEEEEEeecCCCCChhH--HHHHHHHHhhCC---CEE
Q 017533 130 RPKVFVVIGINTAFSSRKR-RDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSIL--DKAIDSEDAQHK---DFL 203 (370)
Q Consensus 130 ~~~~~llI~V~S~~~~~~r-R~aIR~TW~~~~~~l~~l~~~~~i~v~FVvG~s~~~~~~~--~~~I~~E~~~~~---DIL 203 (370)
.....+.|+|.+.-+..++ +..|+.+..+... ......+.+ |++..+.+++... ..++.+=.++|+ .+.
T Consensus 121 ~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~----~~~~~~~e~-~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~ 195 (691)
T PRK05454 121 PPEARTAILMPIYNEDPARVFAGLRAMYESLAA----TGHGAHFDF-FILSDTRDPDIAAAEEAAWLELRAELGGEGRIF 195 (691)
T ss_pred CCCCceEEEEeCCCCChHHHHHHHHHHHHHHHh----cCCCCCEEE-EEEECCCChhHHHHHHHHHHHHHHhcCCCCcEE
Confidence 3445666666666555432 4567777654221 001223454 8887665321111 011222233443 333
Q ss_pred EeccccccccchhHHHHHHHHHHhc--CCceEEEEecCceeecHHHHHHHHhhcCCCCceEEEEeecCcccccCCCcccc
Q 017533 204 RLEHIEGYHELSAKTKIFFSTAVAK--WDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKSGPVLSQKNVKYHE 281 (370)
Q Consensus 204 ~ld~~Dsy~nLt~Kt~~~~~wa~~~--~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~~lYiG~~~~~pv~rd~~~K~~~ 281 (370)
... -.+|.-.|.-..-.+. +. .+++|++-.|-|+.+..+.|...+......|++ |-+...+...+..+ ++.
T Consensus 196 yr~---R~~n~~~KaGNl~~~~-~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~v--GlVQt~~~~~n~~s-lfa 268 (691)
T PRK05454 196 YRR---RRRNVGRKAGNIADFC-RRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPRA--GLIQTLPVAVGADT-LFA 268 (691)
T ss_pred EEE---CCcCCCccHHHHHHHH-HhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcCE--EEEeCCccCcCCCC-HHH
Confidence 322 2233334665544443 34 367999999999999999999999876444443 55432222111111 110
Q ss_pred -----------C------CccccCCCCCccCccccCCeeeecHHHHHHHHH-----hC-CCcCCCCcchHHHHHHHh--c
Q 017533 282 -----------P------EYWKFGEEGNKYFRHATGQIYAISKDLATYISI-----NQ-PILHKFANEDVSLGSWFI--G 336 (370)
Q Consensus 282 -----------p------e~w~f~y~~~~Yp~Y~~G~~YvlSrdla~~I~~-----~~-~~l~~~~~EDV~lG~~l~--g 336 (370)
+ .+|. +. .. ...|-..++.++....+.. .. +.-...--||...|..+. |
T Consensus 269 R~qqf~~~~y~~~~~~G~~~w~-~~--~g---~f~G~naIiR~~af~~~~glp~L~g~~p~~~~~LseD~~~a~~l~~~G 342 (691)
T PRK05454 269 RLQQFATRVYGPLFAAGLAWWQ-GG--EG---NYWGHNAIIRVKAFAEHCGLPPLPGRGPFGGHILSHDFVEAALMRRAG 342 (691)
T ss_pred HHHHHHHHHHHHHHHhhhhhhc-cC--cc---ccccceEEEEHHHHHHhcCCccccccCCCCCCcccHHHHHHHHHHHCC
Confidence 0 0111 00 00 1246667888887665531 11 111234578999998884 5
Q ss_pred CCCeEecCC
Q 017533 337 LEVEHIDDR 345 (370)
Q Consensus 337 L~v~~id~~ 345 (370)
-.|..+++-
T Consensus 343 yrV~~~pd~ 351 (691)
T PRK05454 343 WGVWLAPDL 351 (691)
T ss_pred CEEEEcCcc
Confidence 567777763
No 68
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=33.03 E-value=48 Score=25.12 Aligned_cols=28 Identities=11% Similarity=0.326 Sum_probs=18.9
Q ss_pred CCccCCCcccccchhHHHHHHHHHHHHHHHh
Q 017533 1 MKYRTSTTTIISTKWIPFVCLFCFALGILFS 31 (370)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (370)
||.|..++ -+||+|++.+..|+.=++++
T Consensus 1 ~r~k~~~~---mtriVLLISfiIlfgRl~Y~ 28 (59)
T PF11119_consen 1 MRRKKNSR---MTRIVLLISFIILFGRLIYS 28 (59)
T ss_pred CCCcccch---HHHHHHHHHHHHHHHHHHHH
Confidence 55555555 46899999888877645544
No 69
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=32.52 E-value=2e+02 Score=28.48 Aligned_cols=22 Identities=32% Similarity=0.644 Sum_probs=17.2
Q ss_pred CceEEEEecCceeecHHHHHHH
Q 017533 230 DADFYVKVDDDVHVNLGMLATT 251 (370)
Q Consensus 230 ~a~F~lKvDDDvfVnl~~L~~~ 251 (370)
.++||+-..||+.....-+..+
T Consensus 169 ~~~YyL~LEDDVia~~~f~~~i 190 (297)
T PF04666_consen 169 LGDYYLQLEDDVIAAPGFLSRI 190 (297)
T ss_pred cCCeEEEecCCeEechhHHHHH
Confidence 6889999999999887644443
No 70
>PLN03181 glycosyltransferase; Provisional
Probab=31.83 E-value=2.5e+02 Score=29.41 Aligned_cols=93 Identities=16% Similarity=0.190 Sum_probs=54.3
Q ss_pred HHHHHHHhccCchhhHhhhccCceEEEEEeecCCC----C-Ch-hHHHHHHH---HHhhCC-CEEEec-ccc-ccccchh
Q 017533 149 RDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSAT----S-NS-ILDKAIDS---EDAQHK-DFLRLE-HIE-GYHELSA 216 (370)
Q Consensus 149 R~aIR~TW~~~~~~l~~l~~~~~i~v~FVvG~s~~----~-~~-~~~~~I~~---E~~~~~-DIL~ld-~~D-sy~nLt~ 216 (370)
=|.-|+.|.+.... ...+.+-+|+.|.|..+. + ++ -+.+.+++ =+++|| +++..+ ..+ .+..-..
T Consensus 108 wD~kR~~Wl~~~p~---~~~~~~prVViVT~Sdp~~C~~~~gD~~LlriikNR~dYArrHGY~lf~~~a~Ld~~~p~~Wa 184 (453)
T PLN03181 108 WDEKRAEWLKLHPS---FAPGAEERVVMVTGSQPTPCKNPIGDHLLLRFFKNKVDYCRIHGYDIFYNNALLHPKMNSYWA 184 (453)
T ss_pred HHHHHHHHHHhCCC---CCCCCCCCEEEEECCCCCCCCCcccHHHHHHHHHHHHHHHHHhCCcEEEeccccCccCchhhh
Confidence 45556677654321 112233456667775522 1 22 33333332 156777 555444 233 5666678
Q ss_pred HHHHHHHHHHhcCCceEEEEecCceeec
Q 017533 217 KTKIFFSTAVAKWDADFYVKVDDDVHVN 244 (370)
Q Consensus 217 Kt~~~~~wa~~~~~a~F~lKvDDDvfVn 244 (370)
|...+-.-..++++++|+.-+|.|+++-
T Consensus 185 KipalRaAM~a~PeAEWfWWLDsDALIM 212 (453)
T PLN03181 185 KLPVVRAAMLAHPEAEWIWWVDSDAVFT 212 (453)
T ss_pred HHHHHHHHHHHCCCceEEEEecCCceee
Confidence 8877777667789999999999998873
No 71
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=29.01 E-value=56 Score=24.78 Aligned_cols=17 Identities=24% Similarity=0.450 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHhc
Q 017533 16 IPFVCLFCFALGILFSN 32 (370)
Q Consensus 16 ~~~~~~~~~~~~~~~~~ 32 (370)
++++|++|+.+|.+++-
T Consensus 42 ~~~~c~~S~~lG~~~~~ 58 (60)
T PF06072_consen 42 VVALCVLSGGLGALVAW 58 (60)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 35889999999998763
No 72
>PRK10018 putative glycosyl transferase; Provisional
Probab=27.56 E-value=5.7e+02 Score=24.68 Aligned_cols=35 Identities=17% Similarity=0.216 Sum_probs=27.8
Q ss_pred HHHHHHhcCCceEEEEecCceeecHHHHHHHHhhc
Q 017533 221 FFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRH 255 (370)
Q Consensus 221 ~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~ 255 (370)
+...+.+....+|++..|+|..+.++.|..++...
T Consensus 76 a~N~gi~~a~g~~I~~lDaDD~~~p~~l~~~~~~~ 110 (279)
T PRK10018 76 VRNQAIMLAQGEYITGIDDDDEWTPNRLSVFLAHK 110 (279)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCccHHHHHHHHH
Confidence 34455556789999999999999998888777654
No 73
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=26.34 E-value=4.6e+02 Score=23.24 Aligned_cols=126 Identities=13% Similarity=0.060 Sum_probs=62.3
Q ss_pred HHHHHHhcCCceEEEEecCceeecHHHHHHHHhhcCCCCceEEEE-eecCcccc-cCCCcccc--CCccccCCC-CCccC
Q 017533 221 FFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGC-MKSGPVLS-QKNVKYHE--PEYWKFGEE-GNKYF 295 (370)
Q Consensus 221 ~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~~lYiG~-~~~~pv~r-d~~~K~~~--pe~w~f~y~-~~~Yp 295 (370)
+...+.+....+|++.+|+|..+..+.|...+......+...+|+ +...+... ....+|.. +..+.+... ....|
T Consensus 75 a~N~g~~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (219)
T cd06913 75 AKNQAIAQSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGCQVRRIPEDSTERYTRWINTLTREQLLTQVYTSHGP 154 (219)
T ss_pred HHHHHHHhcCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEEEEEecCcccchhhHHHHHhcCHHHHHHHHHhhcCC
Confidence 334555556789999999999999988877666554444445565 22111100 00001100 000000000 00011
Q ss_pred ccccCCeeeecHHHHHHHHHhCCCcCCCCcchHHHHHHH--hcCCCeEecCCCce
Q 017533 296 RHATGQIYAISKDLATYISINQPILHKFANEDVSLGSWF--IGLEVEHIDDRNMC 348 (370)
Q Consensus 296 ~Y~~G~~YvlSrdla~~I~~~~~~l~~~~~EDV~lG~~l--~gL~v~~id~~~fc 348 (370)
....++.++++++...+---... .....||..+..-+ .|-.+.++++.-..
T Consensus 155 -~~~~~~~~~rr~~~~~~g~f~~~-~~~~~eD~~l~~r~~~~g~~i~~~~~~~~~ 207 (219)
T cd06913 155 -TVIMPTWFCSREWFSHVGPFDEG-GKGVPEDLLFFYEHLRKGGGVYRVDRCLLL 207 (219)
T ss_pred -ccccccceeehhHHhhcCCccch-hccchhHHHHHHHHHHcCCceEEEcceeee
Confidence 11222356788877765422111 11235998886644 56667777765443
No 74
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=25.02 E-value=3.7e+02 Score=26.36 Aligned_cols=97 Identities=13% Similarity=0.145 Sum_probs=57.7
Q ss_pred cCceEEEEEeecCCCCChhHHHHHHHHH----------hhCCCEEEe--ccccc-------ccc-----chhH----HHH
Q 017533 169 EKGIIIRFMIGHSATSNSILDKAIDSED----------AQHKDFLRL--EHIEG-------YHE-----LSAK----TKI 220 (370)
Q Consensus 169 ~~~i~v~FVvG~s~~~~~~~~~~I~~E~----------~~~~DIL~l--d~~Ds-------y~n-----Lt~K----t~~ 220 (370)
...|.+-|+++.+.. ++.....|+++. ..|+.|.++ ||.+. .+. .-.+ ...
T Consensus 54 ~~lIsLgfLv~d~~e-~d~t~~~l~~~~~~~q~~~~~~~~F~~itIl~~df~~~~~~~~~~RH~~~~Q~~RR~~mAraRN 132 (269)
T PF03452_consen 54 HELISLGFLVSDSSE-FDNTLKILEAALKKLQSHGPESKRFRSITILRKDFGQQLSQDRSERHAFEVQRPRRRAMARARN 132 (269)
T ss_pred chheEEEEEcCCCch-hHHHHHHHHHHHHHHhccCcccCCcceEEEEcCCCcccccCchhhccchhhHHHHHHHHHHHHH
Confidence 356788999999863 233334444333 346666655 45331 111 1111 112
Q ss_pred HHHHHHhcCCceEEEEecCceeecHHHHHHHHhhcCC---CCceEEEEe
Q 017533 221 FFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRS---KPRVYIGCM 266 (370)
Q Consensus 221 ~~~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~---~~~lYiG~~ 266 (370)
++-...-.+..+|++-.|-|+.-.++.|++.|..++. -|.+|.+..
T Consensus 133 ~LL~~aL~p~~swVlWlDaDIv~~P~~lI~dli~~~kdIivPn~~~~~~ 181 (269)
T PF03452_consen 133 FLLSSALGPWHSWVLWLDADIVETPPTLIQDLIAHDKDIIVPNCWRRYY 181 (269)
T ss_pred HHHHhhcCCcccEEEEEecCcccCChHHHHHHHhCCCCEEccceeeccc
Confidence 2222222358899999999999999999999988753 245555543
No 75
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional
Probab=23.47 E-value=4.7e+02 Score=27.36 Aligned_cols=94 Identities=13% Similarity=0.116 Sum_probs=54.9
Q ss_pred HHHHHHHhccCchhhHhhhccCceEEEEEeecCCCC------ChhHHHHHHH---HHhhCCCEEEecc---ccccccchh
Q 017533 149 RDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATS------NSILDKAIDS---EDAQHKDFLRLEH---IEGYHELSA 216 (370)
Q Consensus 149 R~aIR~TW~~~~~~l~~l~~~~~i~v~FVvG~s~~~------~~~~~~~I~~---E~~~~~DIL~ld~---~Dsy~nLt~ 216 (370)
=|.-|+.|............ ..-+++.|.|..+.+ +.-+++.++. =+++||=-+..+. .+.......
T Consensus 105 wd~~R~~wl~~~p~~~~~~~-g~prVviVT~sdp~~c~n~~gd~yLlks~kNK~dYAr~HGY~~fyn~~~ld~~~p~~Wa 183 (429)
T PLN03182 105 WDEQRRRWLRKNPGFPSFVN-GKPRVLLVTGSQPKPCENPVGDHYLLKSLKNKIDYCRLHGIEIFYNMAHLDAEMAGFWA 183 (429)
T ss_pred HHHHHHHHHHhCCCCCCccC-CCCCEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHHHHhCCEEEeehhhcCcCCCcchh
Confidence 34455666654321100101 234677787776542 2233443332 1466773344453 234455677
Q ss_pred HHHHHHHHHHhcCCceEEEEecCceee
Q 017533 217 KTKIFFSTAVAKWDADFYVKVDDDVHV 243 (370)
Q Consensus 217 Kt~~~~~wa~~~~~a~F~lKvDDDvfV 243 (370)
|.-.+.....++++++|+.=+|.|+++
T Consensus 184 KlpaLR~aM~~~PeaEWiWWLDsDALI 210 (429)
T PLN03182 184 KLPLLRKLMLAHPEVEWIWWMDSDALF 210 (429)
T ss_pred HHHHHHHHHHHCCCceEEEEecCCcee
Confidence 888888877888999999999999987
No 76
>PF03742 PetN: PetN ; InterPro: IPR005497 PetN is a small hydrophobic protein, crucial for cytochrome b6-f complex assembly and/or stability. It is found in bacteria and plants. Cytochrome b6-f complex is composed of 4 large subunits: cytochrome b6, subunit IV (17 kDa polypeptide, petD), cytochrome f and the Rieske protein, as well as 4 small subunits: petG, petL, petM and petN. The complex functions as a dimer. The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI) [].; GO: 0045158 electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity, 0017004 cytochrome complex assembly, 0009512 cytochrome b6f complex; PDB: 2ZT9_H 2D2C_H 2E76_H 1VF5_U 2E75_H 2E74_H.
Probab=23.42 E-value=85 Score=20.42 Aligned_cols=23 Identities=22% Similarity=0.590 Sum_probs=20.0
Q ss_pred ccchhHHHHHHHHHHHHHHHhcC
Q 017533 11 ISTKWIPFVCLFCFALGILFSNL 33 (370)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~r 33 (370)
++--|+.++.+|+|-+.+.|=||
T Consensus 4 v~lgWaal~~~ftfSlalVVWGR 26 (29)
T PF03742_consen 4 VSLGWAALMVVFTFSLALVVWGR 26 (29)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHHHHHHHHhccceeEEEec
Confidence 45579999999999999998887
No 77
>PF09964 DUF2198: Uncharacterized protein conserved in bacteria (DUF2198); InterPro: IPR019242 This family of various hypothetical archaeal proteins has no known function.
Probab=22.02 E-value=63 Score=25.56 Aligned_cols=22 Identities=27% Similarity=0.573 Sum_probs=19.5
Q ss_pred chhHHHHHHHHHHHHHHHhcCC
Q 017533 13 TKWIPFVCLFCFALGILFSNLT 34 (370)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~r~ 34 (370)
.-|++++-++|..||.+++.+|
T Consensus 46 ~~~ii~iD~~Sl~aGf~~a~~m 67 (74)
T PF09964_consen 46 TWWIIFIDAVSLTAGFLYAKKM 67 (74)
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999886
Done!