BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017534
         (370 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4GAK|A Chain A, Crystal Structure Of Acyl-Acp Thioesterase From Spirosoma
           Linguale
          Length = 250

 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 96/222 (43%), Gaps = 18/222 (8%)

Query: 86  EKFIVRCYEVGINKTATVETIANLLQEVGCNHAQSVGFSTDGFATTTTMRKLHLIWVTAR 145
           + F +R YE       ++  + NL QE    +A   G      A      +  + W   R
Sbjct: 10  DTFTLRGYECDAFGRXSIPALXNLXQESANRNAIDYGIGIADLA------QKGVGWXLXR 63

Query: 146 MHIEIYKYPAWSDVVEIETWCQSEGRIGTRRDWILKDYAT-GEVIGRATSKWVMMNQDTR 204
             + I++YP + D +++ T+  +  +    RD   +  AT G ++  A S W++ + + R
Sbjct: 64  FCLRIHQYPRYGDTIQLXTYPTTVDKYFIHRD--FRVLATDGTLLADARSTWLVFSXEKR 121

Query: 205 RLQKVSDDVREEYLVFCPRELRLAFPEENSSSSRKISKLEDPAQYS-RLGLIPRRADLDM 263
               + D +R+      P       P        + +     A  S ++G +    ++D 
Sbjct: 122 SXVPLPDFIRQ----LSPPANVDPLPALPLKPDFQTASFATAASKSVQVGWL----NIDQ 173

Query: 264 NQHVNNVTYIGWLLESMPQDVIDTHELQTITLDYRRECQQDD 305
           NQHVNNV Y+ WLLE +  +++ T E+  I L YR E    D
Sbjct: 174 NQHVNNVAYVQWLLEGVDSEIVQTREIAEIDLVYRTESHWHD 215


>pdb|2OWN|A Chain A, Crystal Structure Of Oleoyl Thioesterase (Putative)
           (Np_784467.1) From Lactobacillus Plantarum At 2.00 A
           Resolution
 pdb|2OWN|B Chain B, Crystal Structure Of Oleoyl Thioesterase (Putative)
           (Np_784467.1) From Lactobacillus Plantarum At 2.00 A
           Resolution
          Length = 262

 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 112/250 (44%), Gaps = 18/250 (7%)

Query: 75  GTLTEDGLSYKEKFIVRCYEVGINKTATVETIANLLQEVGCNHAQSVGFSTDGFATTTTM 134
            TL  +   Y E+  +  YE      AT+ T+ ++      + + ++G +T+       +
Sbjct: 3   ATLGANASLYSEQHRITYYECDRTGRATLTTLIDIAVLASEDQSDALGLTTE------XV 56

Query: 135 RKLHLIWVTARMHIEIYKYPAWSDVVEIETWCQSEGRIGTRRDWILKDYATGEVIGRATS 194
           +   + WV  +  I+I + P   +VV I     +       R++ ++D A G+ +   TS
Sbjct: 57  QSHGVGWVVTQYAIDITRXPRQDEVVTIAVRGSAYNPYFAYREFWIRD-ADGQQLAYITS 115

Query: 195 KWVMMNQDTRRLQKVSDDVREEYLVFCPREL-RLAFPEENSSSSRKISKLEDPAQYSRLG 253
            WV  +Q TRR+ K+  ++   Y     + + RL  P    ++   I+K   P       
Sbjct: 116 IWVXXSQTTRRIVKILPELVAPYQSEVVKRIPRLPRPISFEATDTTITK---PYHV---- 168

Query: 254 LIPRRADLDMNQHVNNVTYIGWLLESMPQDVIDTHELQTITLDYRRECQQDDVVDSLTSA 313
              R  D+D N+HVNN  Y  WL++++P   +  H+L  + + Y  E +    V +  + 
Sbjct: 169 ---RFFDIDPNRHVNNAHYFDWLVDTLPATFLLQHDLVHVDVRYENEVKYGQTVTAHANI 225

Query: 314 EPFEDAEPVS 323
            P E A+ V+
Sbjct: 226 LPSEVADQVT 235


>pdb|2ESS|A Chain A, Crystal Structure Of An Acyl-Acp Thioesterase
           (Np_810988.1) From Bacteroides Thetaiotaomicron Vpi-5482
           At 1.90 A Resolution
          Length = 248

 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 97/224 (43%), Gaps = 26/224 (11%)

Query: 87  KFIVRCYEVGINKTATVETIANLLQEVGCNHAQSVGFSTDGFATTTTMRKLHLIWVTARM 146
           +F+   + V  N   T   + N L      HA   GF         T+ + +  WV +R+
Sbjct: 12  QFVAEPFHVDFNGRLTXGVLGNHLLNCAGFHASDRGFGI------ATLNEDNYTWVLSRL 65

Query: 147 HIEIYKYPAWSDVVEIETWCQSEGRIGTRRDWILKDYATGEVIGRATSKWVMMNQDTRR- 205
            IE+ + P   +   ++TW ++  R+ T R++ + D   G+ IG A S W  +N +TR+ 
Sbjct: 66  AIELDEXPYQYEKFSVQTWVENVYRLFTDRNFAVID-KDGKKIGYARSVWAXINLNTRKP 124

Query: 206 --LQKVSDDVREEYLVF--CPRELRLAFPEENSSSSRKISKLEDPAQYSRLGLIPRRADL 261
             L  +      +Y+    CP E              K S+++  +      L  + +D+
Sbjct: 125 ADLLALHGGSIVDYICDEPCPIE--------------KPSRIKVTSNQPVATLTAKYSDI 170

Query: 262 DMNQHVNNVTYIGWLLESMPQDVIDTHELQTITLDYRRECQQDD 305
           D+N HVN++ YI  +L+  P ++  T  ++     Y  E    D
Sbjct: 171 DINGHVNSIRYIEHILDLFPIELYQTKRIRRFEXAYVAESYFGD 214


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.134    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,111,766
Number of Sequences: 62578
Number of extensions: 458506
Number of successful extensions: 966
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 953
Number of HSP's gapped (non-prelim): 11
length of query: 370
length of database: 14,973,337
effective HSP length: 100
effective length of query: 270
effective length of database: 8,715,537
effective search space: 2353194990
effective search space used: 2353194990
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)