BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017534
(370 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q42561|FATA1_ARATH Oleoyl-acyl carrier protein thioesterase 1, chloroplastic
OS=Arabidopsis thaliana GN=FATA PE=1 SV=1
Length = 362
Score = 541 bits (1395), Expect = e-153, Method: Compositional matrix adjust.
Identities = 276/376 (73%), Positives = 304/376 (80%), Gaps = 22/376 (5%)
Query: 1 MLKPFCNVTDQAQCRFLGLPS------PVPRFRRRYAVVPCSRPMNKPTAPVQVQAIVS- 53
MLK CNVTD R L S PV RRR +V CS+ K T V ++A+VS
Sbjct: 1 MLKLSCNVTDSKLQRSLLFFSHSYRSDPVNFIRRR--IVSCSQ--TKKTGLVPLRAVVSA 56
Query: 54 DQGSPARLESGPCSLADRLRLGTLTEDGLSYKEKFIVRCYEVGINKTATVETIANLLQEV 113
DQGS + G +LAD+LRLG+LTEDGLSYKEKF+VR YEVG NKTATVETIANLLQEV
Sbjct: 57 DQGSVVQ---GLATLADQLRLGSLTEDGLSYKEKFVVRSYEVGSNKTATVETIANLLQEV 113
Query: 114 GCNHAQSVGFSTDGFATTTTMRKLHLIWVTARMHIEIYKYPAWSDVVEIETWCQSEGRIG 173
GCNHAQSVGFSTDGFATTTTMRKLHLIWVTARMHIEIYKYPAW DVVEIETWCQSEGRIG
Sbjct: 114 GCNHAQSVGFSTDGFATTTTMRKLHLIWVTARMHIEIYKYPAWGDVVEIETWCQSEGRIG 173
Query: 174 TRRDWILKDYATGEVIGRATSKWVMMNQDTRRLQKVSDDVREEYLVFCPRELRLAFPEEN 233
TRRDWILKD TGEV GRATSKWVMMNQDTRRLQKVSDDVR+EYLVFCP+E RLAFPEEN
Sbjct: 174 TRRDWILKDSVTGEVTGRATSKWVMMNQDTRRLQKVSDDVRDEYLVFCPQEPRLAFPEEN 233
Query: 234 SSSSRKISKLEDPAQYSRLGLIPRRADLDMNQHVNNVTYIGWLLESMPQDVIDTHELQTI 293
+ S +KI KLEDPAQYS +GL PRRADLDMNQHVNNVTYIGW+LES+PQ+++DTHELQ I
Sbjct: 234 NRSLKKIPKLEDPAQYSMIGLKPRRADLDMNQHVNNVTYIGWVLESIPQEIVDTHELQVI 293
Query: 294 TLDYRRECQQDDVVDSLTSAEPFEDAEPVSKLQGTNGSPAITGDKEDNHQFLHLLRLSGD 353
TLDYRRECQQDDVVDSLT+ S++ GTNGS ++ QFLHLLRLSGD
Sbjct: 294 TLDYRRECQQDDVVDSLTTT--------TSEIGGTNGSATSGTQGHNDSQFLHLLRLSGD 345
Query: 354 GSEINRGRSVWRKKPA 369
G EINRG ++WRKKP+
Sbjct: 346 GQEINRGTTLWRKKPS 361
>sp|Q42712|FATA_CORSA Oleoyl-acyl carrier protein thioesterase, chloroplastic (Fragment)
OS=Coriandrum sativum GN=FATA PE=2 SV=1
Length = 369
Score = 519 bits (1336), Expect = e-146, Method: Compositional matrix adjust.
Identities = 263/362 (72%), Positives = 294/362 (81%), Gaps = 7/362 (1%)
Query: 13 QCRFLGLPSPVPRFRRRYAVVPCSRPM---NKPTAPVQVQAIVSDQGSPARLESGPCSLA 69
QCRFL S RRR AV P N QV ++ + E SLA
Sbjct: 10 QCRFL--TSDSISIRRRTAVSRWRSPTFSANYNGVNAQVLGVLKQEQKEIEEEKRSSSLA 67
Query: 70 DRLRLGTLTEDGLSYKEKFIVRCYEVGINKTATVETIANLLQEVGCNHAQSVGFSTDGFA 129
++LRLG+LTEDGLSYKEKFIVRCYEVGINKTATVETIANLLQEVG NHAQSVGFSTDGFA
Sbjct: 68 EKLRLGSLTEDGLSYKEKFIVRCYEVGINKTATVETIANLLQEVGGNHAQSVGFSTDGFA 127
Query: 130 TTTTMRKLHLIWVTARMHIEIYKYPAWSDVVEIETWCQSEGRIGTRRDWILKDYATGEVI 189
TT TMRKLHLIWVTARMHIEIY+YPAWSDVVEIETWCQSEGRIGTRRDWI+KD+AT EVI
Sbjct: 128 TTPTMRKLHLIWVTARMHIEIYRYPAWSDVVEIETWCQSEGRIGTRRDWIIKDFATDEVI 187
Query: 190 GRATSKWVMMNQDTRRLQKVSDDVREEYLVFCPRELRLAFPEENSSSSRKISKLEDPAQY 249
GRATSKWVMMNQDTRRLQKVSDDVR+EYLVFCP+ RL+FPEEN+ S +KISKLEDPAQ+
Sbjct: 188 GRATSKWVMMNQDTRRLQKVSDDVRDEYLVFCPKTPRLSFPEENNKSLKKISKLEDPAQH 247
Query: 250 SRLGLIPRRADLDMNQHVNNVTYIGWLLESMPQDVIDTHELQTITLDYRRECQQDDVVDS 309
SRLGL PRRADLDMNQHVNNV YIGW+LES+P++V+ THEL+TITLDYRRECQ DDVVDS
Sbjct: 248 SRLGLSPRRADLDMNQHVNNVAYIGWVLESIPKEVLYTHELETITLDYRRECQHDDVVDS 307
Query: 310 LTSAEPFEDAEPVSKLQGTNG-SPAITGDKEDNHQFLHLLRLSGDGSEINRGRSVWRKKP 368
LTS E ED V+K+ GTNG + A T ++D+ +FLH LR+SG G EINRGR+ WRKK
Sbjct: 308 LTSPEVDEDT-AVTKIIGTNGHAAAATEARDDSLKFLHFLRVSGQGLEINRGRTEWRKKS 366
Query: 369 AR 370
+
Sbjct: 367 EK 368
>sp|Q9SV64|FATA2_ARATH Oleoyl-acyl carrier protein thioesterase 2, chloroplastic
OS=Arabidopsis thaliana GN=FATA2 PE=2 SV=1
Length = 367
Score = 515 bits (1327), Expect = e-145, Method: Compositional matrix adjust.
Identities = 264/375 (70%), Positives = 295/375 (78%), Gaps = 13/375 (3%)
Query: 1 MLKPFCNVTDQAQCRFLGLPSPVPRFRRRYAVVPCSRPMNKPTAPVQVQAIVS-DQGSP- 58
MLK CNVTD F R+ + C + +P ++AI+S D G+
Sbjct: 1 MLKLSCNVTDHIHNLFSNSRRIFVPVHRQTRPISCFQLKKEP-----LRAILSADHGNSS 55
Query: 59 ---ARLESGPCSLADRLRLGTLTEDGLSYKEKFIVRCYEVGINKTATVETIANLLQEVGC 115
A SG S ADRLR G L EDG SYKEKFIVR YEVGINKTAT+ETIANLLQEV C
Sbjct: 56 VRVADTVSG-TSPADRLRFGRLMEDGFSYKEKFIVRSYEVGINKTATIETIANLLQEVAC 114
Query: 116 NHAQSVGFSTDGFATTTTMRKLHLIWVTARMHIEIYKYPAWSDVVEIETWCQSEGRIGTR 175
NH Q+VGFSTDGFATT TMRKLHLIWVTARMHIEIYKYPAWSDVVEIETWCQSEGRIGTR
Sbjct: 115 NHVQNVGFSTDGFATTLTMRKLHLIWVTARMHIEIYKYPAWSDVVEIETWCQSEGRIGTR 174
Query: 176 RDWILKDYATGEVIGRATSKWVMMNQDTRRLQKVSDDVREEYLVFCPRELRLAFPEENSS 235
RDWILKD ATGEVIGRATSKWVMMNQDTRRLQ+V+D+VR+EYLVFCP E RLAFPEEN+S
Sbjct: 175 RDWILKDCATGEVIGRATSKWVMMNQDTRRLQRVTDEVRDEYLVFCPPEPRLAFPEENNS 234
Query: 236 SSRKISKLEDPAQYSRLGLIPRRADLDMNQHVNNVTYIGWLLESMPQDVIDTHELQTITL 295
S +KI KLEDPAQYS LGL PRRADLDMNQHVNNVTYIGW+LES+PQ++IDTHEL+ ITL
Sbjct: 235 SLKKIPKLEDPAQYSMLGLKPRRADLDMNQHVNNVTYIGWVLESIPQEIIDTHELKVITL 294
Query: 296 DYRRECQQDDVVDSLTSAEPFEDAEPVSKLQGTNGSPAITGDKEDNHQFLHLLRLSGDGS 355
DYRRECQQDD+VDSLT++E E VSKL GTNGS + + + FLH+LRLS +G
Sbjct: 295 DYRRECQQDDIVDSLTTSET--PNEVVSKLTGTNGSTTSSKREHNESHFLHILRLSENGQ 352
Query: 356 EINRGRSVWRKKPAR 370
EINRGR+ WRKK +R
Sbjct: 353 EINRGRTQWRKKSSR 367
>sp|Q39513|FATB_CUPHO Palmitoyl-acyl carrier protein thioesterase, chloroplastic
OS=Cuphea hookeriana GN=FATB1 PE=2 SV=1
Length = 415
Score = 265 bits (677), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 139/307 (45%), Positives = 185/307 (60%), Gaps = 33/307 (10%)
Query: 65 PCSLADRLRLGTLTEDGLSYKEKFIVRCYEVGINKTATVETIANLLQEVGCNHAQSVGFS 124
P L D LG++ +DGL +++ F +R YE+G ++TA++ET+ N LQE NH + G S
Sbjct: 119 PDMLVDPFGLGSIVQDGLVFRQNFSIRSYEIGADRTASIETVMNHLQETALNHVKIAGLS 178
Query: 125 TDGFATTTTMRKLHLIWVTARMHIEIYKYPAWSDVVEIETWCQSEGRIGTRRDWILKDYA 184
DGF T M K LIWV A+M + + +YP W D VE+ TW G+ G RRDW++ D
Sbjct: 179 NDGFGRTPEMYKRDLIWVVAKMQVMVNRYPTWGDTVEVNTWVAKSGKNGMRRDWLISDCN 238
Query: 185 TGEVIGRATSKWVMMNQDTRRLQKVSDDVREE---YLVFCPRELRLAFPEENSSSSRKIS 241
TGE++ RA+S WVMMNQ TRRL K+ D+VR E + V P + RK+
Sbjct: 239 TGEILTRASSVWVMMNQKTRRLSKIPDEVRNEIEPHFVDSPPVIE--------DDDRKLP 290
Query: 242 KL-EDPAQYSRLGLIPRRADLDMNQHVNNVTYIGWLLESMPQDVIDTHELQTITLDYRRE 300
KL E A R GL PR DLD+NQHVNNV YIGW+LES P +V++T EL ++TL+YRRE
Sbjct: 291 KLDEKTADSIRKGLTPRWNDLDVNQHVNNVKYIGWILESTPPEVLETQELCSLTLEYRRE 350
Query: 301 CQQDDVVDSLTSAEPFEDAEPVSKLQGTNGSPAITGDKEDNHQFLHLLRLSGDGSEINRG 360
C ++ V++SLT+ +P G GS QF HLLRL DG EI +G
Sbjct: 351 CGRESVLESLTAMDPS---------GGGYGS-----------QFQHLLRLE-DGGEIVKG 389
Query: 361 RSVWRKK 367
R+ WR K
Sbjct: 390 RTEWRPK 396
>sp|Q9SJE2|FATB_ARATH Palmitoyl-acyl carrier protein thioesterase, chloroplastic
OS=Arabidopsis thaliana GN=FATB PE=1 SV=1
Length = 412
Score = 254 bits (650), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 133/304 (43%), Positives = 189/304 (62%), Gaps = 28/304 (9%)
Query: 68 LADRLRLGTLTEDGLSYKEKFIVRCYEVGINKTATVETIANLLQEVGCNHAQSVGFSTDG 127
L D +G + +DGL +++ F +R YE+G +++A++ET+ N LQE NH ++ G DG
Sbjct: 123 LVDPFGIGRIVQDGLVFRQNFSIRSYEIGADRSASIETVMNHLQETALNHVKTAGLLGDG 182
Query: 128 FATTTTMRKLHLIWVTARMHIEIYKYPAWSDVVEIETWCQSEGRIGTRRDWILKDYATGE 187
F +T M K +LIWV RM + + KYP W DVVE++TW G+ G RRDW+++D TGE
Sbjct: 183 FGSTPEMFKKNLIWVVTRMQVVVDKYPTWGDVVEVDTWVSQSGKNGMRRDWLVRDCNTGE 242
Query: 188 VIGRATSKWVMMNQDTRRLQKVSDDVR---EEYLVFCPRELRLAFPEENSSSSRKISKLE 244
+ RA+S WVMMN+ TRRL K+ ++VR E Y V L + SRK++K++
Sbjct: 243 TLTRASSVWVMMNKLTRRLSKIPEEVRGEIEPYFVNSDPVL--------AEDSRKLTKID 294
Query: 245 DP-AQYSRLGLIPRRADLDMNQHVNNVTYIGWLLESMPQDVIDTHELQTITLDYRRECQQ 303
D A Y R GL PR +DLD+NQHVNNV YIGW+LES P +++ +L+++TL+YRREC +
Sbjct: 295 DKTADYVRSGLTPRWSDLDVNQHVNNVKYIGWILESAPVGIMERQKLKSMTLEYRRECGR 354
Query: 304 DDVVDSLTSAEPFEDAEPVSKLQGTNGSPAITGDKEDNHQFLHLLRLSGDGSEINRGRSV 363
D V+ SLT+ + G+ A GD E HLLRL DG+E+ RGR+
Sbjct: 355 DSVLQSLTAVTGCDI-----------GNLATAGDVE----CQHLLRLQ-DGAEVVRGRTE 398
Query: 364 WRKK 367
W K
Sbjct: 399 WSSK 402
>sp|Q9SQI3|FATB_GOSHI Palmitoyl-acyl carrier protein thioesterase, chloroplastic
OS=Gossypium hirsutum GN=FATB1 PE=1 SV=1
Length = 413
Score = 250 bits (638), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 134/308 (43%), Positives = 192/308 (62%), Gaps = 24/308 (7%)
Query: 65 PCSLADRLRLGTLTEDGLSYKEKFIVRCYEVGINKTATVETIANLLQEVGCNHAQSVGFS 124
P + D +G + +DGL + + F +R YE+G ++TA++ET+ N LQE NH +S G
Sbjct: 115 PDMVIDPFGIGKIVQDGLVFSQNFSIRSYEIGADQTASIETLMNHLQETAINHCRSAGLL 174
Query: 125 TDGFATTTTMRKLHLIWVTARMHIEIYKYPAWSDVVEIETWCQSEGRIGTRRDWILKDYA 184
+GF T M K +LIWV RM + + +YP W DVV+++TW + G+ G RRDW++ +
Sbjct: 175 GEGFGATPEMCKKNLIWVVTRMQVVVDRYPTWGDVVQVDTWVSASGKNGMRRDWLVSNSE 234
Query: 185 TGEVIGRATSKWVMMNQDTRRLQKVSDDVREEYL-VFCPRELRLAFPEENSSSSRKISKL 243
TGE++ RATS WVMMN+ TRRL K+ ++VR E F + LA S+K+ KL
Sbjct: 235 TGEILTRATSVWVMMNKLTRRLSKIPEEVRGEIEPFFMNSDPVLA------EDSQKLVKL 288
Query: 244 EDP-AQYSRLGLIPRRADLDMNQHVNNVTYIGWLLESMPQDVIDTHELQTITLDYRRECQ 302
+D A++ GL P+ +DLD+NQHVNNV YIGW+LES P ++++HEL +TL+YRREC
Sbjct: 289 DDSTAEHVCKGLTPKWSDLDVNQHVNNVKYIGWILESAPLPILESHELSALTLEYRRECG 348
Query: 303 QDDVVDSLTSAEPFEDAEPVSKLQGTNGSPAITGDKEDNHQFLHLLRLSGDGSEINRGRS 362
+D V+ SLT+ + +N A+ E N Q HLLRL DG+EI RGR+
Sbjct: 349 RDSVLQSLTT------------VSDSNTENAVNVG-EFNCQ--HLLRLD-DGAEIVRGRT 392
Query: 363 VWRKKPAR 370
WR K A+
Sbjct: 393 RWRPKHAK 400
>sp|Q39473|FATB_CINCA Myristoyl-acyl carrier protein thioesterase, chloroplastic
OS=Cinnamomum camphora GN=FATB1 PE=2 SV=1
Length = 382
Score = 214 bits (544), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 113/288 (39%), Positives = 164/288 (56%), Gaps = 27/288 (9%)
Query: 81 GLSYKEKFIVRCYEVGINKTATVETIANLLQEVGCNHAQSVGFSTDGFATTTTMRKLHLI 140
GL ++ F +R YEVG +++ ++ + N LQE NHA+SVG DGF TT M K LI
Sbjct: 104 GLVFRRTFAIRSYEVGPDRSTSIVAVMNHLQEAALNHAKSVGILGDGFGTTLEMSKRDLI 163
Query: 141 WVTARMHIEIYKYPAWSDVVEIETWCQSEGRIGTRRDWILKDYATGEVIGRATSKWVMMN 200
WV R H+ + +YPAW D VE+E W + G G R D++++D TGE++ R TS VMMN
Sbjct: 164 WVVKRTHVAVERYPAWGDTVEVECWVGASGNNGRRHDFLVRDCKTGEILTRCTSLSVMMN 223
Query: 201 QDTRRLQKVSDDVREEYLVFCPREL-RLAFPEENSSSSRKISKLEDPAQYSRLGLIPRRA 259
TRRL K+ ++VR E P + +A +E +K++ + A Y + GL PR
Sbjct: 224 TRTRRLSKIPEEVRGE---IGPAFIDNVAVKDEEIKKPQKLN--DSTADYIQGGLTPRWN 278
Query: 260 DLDMNQHVNNVTYIGWLLESMPQDVIDTHELQTITLDYRRECQQDDVVDSLTSAEPFEDA 319
DLD+NQHVNN+ Y+ W+LE++P + ++H + + T++YRREC D V+ SLT+
Sbjct: 279 DLDINQHVNNIKYVDWILETVPDSIFESHHISSFTIEYRRECTMDSVLQSLTTVS----- 333
Query: 320 EPVSKLQGTNGSPAITGDKEDNHQFLHLLRLSGDGSEINRGRSVWRKK 367
G E HLL+L G GSE+ R ++ WR K
Sbjct: 334 ---------------GGSSEAGLVCEHLLQLEG-GSEVLRAKTEWRPK 365
>sp|Q41635|FATB_UMBCA Lauroyl-acyl carrier protein thioesterase, chloroplastic
OS=Umbellularia californica GN=FATB1 PE=1 SV=1
Length = 382
Score = 211 bits (537), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 112/291 (38%), Positives = 165/291 (56%), Gaps = 33/291 (11%)
Query: 81 GLSYKEKFIVRCYEVGINKTATVETIANLLQEVGCNHAQSVGFSTDGFATTTTMRKLHLI 140
GL ++ F +R YEVG +++ ++ + N +QE NHA+SVG DGF TT M K L+
Sbjct: 104 GLVFRRTFAIRSYEVGPDRSTSILAVMNHMQEATLNHAKSVGILGDGFGTTLEMSKRDLM 163
Query: 141 WVTARMHIEIYKYPAWSDVVEIETWCQSEGRIGTRRDWILKDYATGEVIGRATSKWVMMN 200
WV R H+ + +YP W D VE+E W + G G RRD++++D TGE++ R TS V+MN
Sbjct: 164 WVVRRTHVAVERYPTWGDTVEVECWIGASGNNGMRRDFLVRDCKTGEILTRCTSLSVLMN 223
Query: 201 QDTRRLQKVSDDVREEYLVFCPRELRLAFPEENSSSSRKISKLE----DPAQYSRLGLIP 256
TRRL + D+VR E+ AF + + +I KL+ A Y + GL P
Sbjct: 224 TRTRRLSTIPDEVRG--------EIGPAFIDNVAVKDDEIKKLQKLNDSTADYIQGGLTP 275
Query: 257 RRADLDMNQHVNNVTYIGWLLESMPQDVIDTHELQTITLDYRRECQQDDVVDSLTSAEPF 316
R DLD+NQHVNN+ Y+ W+ E++P + ++H + + TL+YRREC +D V+ SLT+
Sbjct: 276 RWNDLDVNQHVNNLKYVAWVFETVPDSIFESHHISSFTLEYRRECTRDSVLRSLTT---- 331
Query: 317 EDAEPVSKLQGTNGSPAITGDKEDNHQFLHLLRLSGDGSEINRGRSVWRKK 367
+ G + + D HLL+L G GSE+ R R+ WR K
Sbjct: 332 --------VSGGSSEAGLVCD--------HLLQLEG-GSEVLRARTEWRPK 365
>sp|A1QZH7|RPOB_BORT9 DNA-directed RNA polymerase subunit beta OS=Borrelia turicatae
(strain 91E135) GN=rpoB PE=3 SV=1
Length = 1155
Score = 38.5 bits (88), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 11/112 (9%)
Query: 45 PVQVQAIVSDQGSPARLESGPCSLADRLRLGTLTEDGLSYKEKFIVRCYEVGINKTATVE 104
PV+ ++D G+P + P + R+ +G L E L K++ Y+V + ++AT E
Sbjct: 930 PVEDMPYLAD-GTPLDICLNPLGVPSRMNIGQLMESQLGLAGKYLSEYYDVPVFESATNE 988
Query: 105 TIANLLQEVGCNHAQSV----GFSTDGFATTTT-----MRKLHLIWVTARMH 147
I L++ G N G++ + F M KLH + V +MH
Sbjct: 989 CIQEKLKKAGFNETSKAILYDGYTGEPFENEVMVGIIYMLKLHHL-VDDKMH 1039
>sp|B5RRJ7|RPOB_BORRA DNA-directed RNA polymerase subunit beta OS=Borrelia recurrentis
(strain A1) GN=rpoB PE=3 SV=1
Length = 1155
Score = 38.1 bits (87), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 11/112 (9%)
Query: 45 PVQVQAIVSDQGSPARLESGPCSLADRLRLGTLTEDGLSYKEKFIVRCYEVGINKTATVE 104
PV+ ++D G+P + P + R+ +G L E L K++ Y+V + ++AT E
Sbjct: 930 PVEDMPYLAD-GTPLDICLNPLGVPSRMNIGQLMESQLGLAGKYLGEYYDVPVFESATNE 988
Query: 105 TIANLLQEVGCNHAQSV----GFSTDGFATTTT-----MRKLHLIWVTARMH 147
I L++ G N G++ + F M KLH + V +MH
Sbjct: 989 CIQEKLKKAGFNETSKAVLYDGYTGEPFENEVMVGVIYMLKLHHL-VDDKMH 1039
>sp|B5RLU9|RPOB_BORDL DNA-directed RNA polymerase subunit beta OS=Borrelia duttonii (strain
Ly) GN=rpoB PE=3 SV=1
Length = 1155
Score = 38.1 bits (87), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 11/112 (9%)
Query: 45 PVQVQAIVSDQGSPARLESGPCSLADRLRLGTLTEDGLSYKEKFIVRCYEVGINKTATVE 104
PV+ ++D G+P + P + R+ +G L E L K++ Y+V + ++AT E
Sbjct: 930 PVEDMPYLAD-GTPLDICLNPLGVPSRMNIGQLMESQLGLAGKYLGEYYDVPVFESATNE 988
Query: 105 TIANLLQEVGCNHAQSV----GFSTDGFATTTT-----MRKLHLIWVTARMH 147
I L++ G N G++ + F M KLH + V +MH
Sbjct: 989 CIQEKLKKAGFNETSKAVLYDGYTGEPFENEVMVGVIYMLKLHHL-VDDKMH 1039
>sp|B2S092|RPOB_BORHD DNA-directed RNA polymerase subunit beta OS=Borrelia hermsii (strain
DAH) GN=rpoB PE=3 SV=1
Length = 1155
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 11/112 (9%)
Query: 45 PVQVQAIVSDQGSPARLESGPCSLADRLRLGTLTEDGLSYKEKFIVRCYEVGINKTATVE 104
PV+ ++D G+P + P + R+ +G L E L K++ Y+V + ++AT E
Sbjct: 930 PVEDMPYLAD-GTPLDICLNPLGVPSRMNIGQLMESQLGLAGKYLGEYYDVPVFESATNE 988
Query: 105 TIANLLQEVGCNHAQSV----GFSTDGFATTTT-----MRKLHLIWVTARMH 147
I L++ G N G++ + F M KLH + V +MH
Sbjct: 989 CIQEKLKKAGFNETSKAVLYDGYTGEPFENEVMVGIIYMLKLHHL-VDDKMH 1039
>sp|Q0SNB8|RPOB_BORAP DNA-directed RNA polymerase subunit beta OS=Borrelia afzelii (strain
PKo) GN=rpoB PE=3 SV=1
Length = 1155
Score = 37.0 bits (84), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 11/112 (9%)
Query: 45 PVQVQAIVSDQGSPARLESGPCSLADRLRLGTLTEDGLSYKEKFIVRCYEVGINKTATVE 104
PV+ ++D G+P + P + R+ +G L E L K++ Y V + ++AT E
Sbjct: 930 PVEDMPYLAD-GTPLDICLNPLGVPSRMNIGQLMESQLGLAGKYLSESYNVPVFESATNE 988
Query: 105 TIANLLQEVGCNHAQSV----GFSTDGFATTTT-----MRKLHLIWVTARMH 147
I L++ G N G++ + F M KLH + V +MH
Sbjct: 989 QIQEKLKKAGFNPTSKEILYDGYTGEPFENEVMVGVIYMLKLHHL-VDDKMH 1039
>sp|Q661M9|RPOB_BORGA DNA-directed RNA polymerase subunit beta OS=Borrelia garinii (strain
PBi) GN=rpoB PE=3 SV=1
Length = 1155
Score = 36.2 bits (82), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 11/112 (9%)
Query: 45 PVQVQAIVSDQGSPARLESGPCSLADRLRLGTLTEDGLSYKEKFIVRCYEVGINKTATVE 104
PV+ ++D G+P + P + R+ +G L E L K++ Y V + ++AT E
Sbjct: 930 PVEDMPYLAD-GTPLDICLNPLGVPSRMNIGQLMESQLGLAGKYLGESYNVPVFESATNE 988
Query: 105 TIANLLQEVGCNHAQSV----GFSTDGFATTTT-----MRKLHLIWVTARMH 147
I L++ G N G++ + F M KLH + V +MH
Sbjct: 989 QIQEKLKKAGFNPTSKEILYDGYTGEPFENEVMVGVIYMLKLHHL-VDDKMH 1039
>sp|B7J1W1|RPOB_BORBZ DNA-directed RNA polymerase subunit beta OS=Borrelia burgdorferi
(strain ZS7) GN=rpoB PE=3 SV=1
Length = 1155
Score = 35.4 bits (80), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 11/112 (9%)
Query: 45 PVQVQAIVSDQGSPARLESGPCSLADRLRLGTLTEDGLSYKEKFIVRCYEVGINKTATVE 104
PV+ ++D G+P + P + R+ +G L E L K++ Y V + ++AT E
Sbjct: 930 PVEDMPYLAD-GTPLDICLNPLGVPSRMNIGQLMESQLGLAGKYLGESYNVPVFESATNE 988
Query: 105 TIANLLQEVGCNHAQSV----GFSTDGFATTTT-----MRKLHLIWVTARMH 147
I L+ G N G++ + F M KLH + V +MH
Sbjct: 989 QIQEKLKTAGFNPTSKEILYDGYTGEPFENEVMVGVIYMLKLHHL-VDDKMH 1039
>sp|Q59191|RPOB_BORBU DNA-directed RNA polymerase subunit beta OS=Borrelia burgdorferi
(strain ATCC 35210 / B31 / CIP 102532 / DSM 4680) GN=rpoB
PE=3 SV=2
Length = 1155
Score = 35.4 bits (80), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 11/112 (9%)
Query: 45 PVQVQAIVSDQGSPARLESGPCSLADRLRLGTLTEDGLSYKEKFIVRCYEVGINKTATVE 104
PV+ ++D G+P + P + R+ +G L E L K++ Y V + ++AT E
Sbjct: 930 PVEDMPYLAD-GTPLDICLNPLGVPSRMNIGQLMESQLGLAGKYLGESYNVPVFESATNE 988
Query: 105 TIANLLQEVGCNHAQSV----GFSTDGFATTTT-----MRKLHLIWVTARMH 147
I L+ G N G++ + F M KLH + V +MH
Sbjct: 989 QIQEKLKTAGFNPTSKEILYDGYTGEPFENEVMVGVIYMLKLHHL-VDDKMH 1039
>sp|Q54U49|MED12_DICDI Putative mediator of RNA polymerase II transcription subunit 12
OS=Dictyostelium discoideum GN=med12 PE=3 SV=2
Length = 2731
Score = 33.5 bits (75), Expect = 2.7, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 22/121 (18%)
Query: 219 VFCPRELRLAFPEENSSSSRKISKLEDPAQYSRLGLIPRRADLDMNQHVNNVTYIGWLLE 278
VF +L L FP E + KIS + +QY I DL + +H+ I LL+
Sbjct: 1983 VFIYEDLFLLFPLEVRNELIKISTIILESQYKETSFIQPSTDLPLIKHIQQNLPISQLLK 2042
Query: 279 SMPQD----------------VIDTHELQTITLDYRRECQQDDVVDSLTSAEPFEDAEPV 322
PQ +I+ L I +E D +++ L++ +ED+ P+
Sbjct: 2043 QQPQQYQLILNRESSGTNKAVLINDDNLDNILF---QESFTDIIINILST---YEDSNPI 2096
Query: 323 S 323
S
Sbjct: 2097 S 2097
>sp|Q5RDR2|RFX2_PONAB DNA-binding protein RFX2 OS=Pongo abelii GN=RFX2 PE=2 SV=1
Length = 704
Score = 32.7 bits (73), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 10/84 (11%)
Query: 237 SRKISKLEDPAQYSRLGLIPRRADLDMNQHVNNVTYIGWLLESMP---------QDVIDT 287
++K L D + +S L P + NQH + + P QD +
Sbjct: 304 AQKTDSLGDSSSHSGLHSTPEQTTAAQNQHHQQYIDVSHVFPEFPAPDLGSVLLQDGVTL 363
Query: 288 HELQTITLDYRRECQQD-DVVDSL 310
H+++ + L YRR C+ DVV +L
Sbjct: 364 HDVKALQLVYRRHCEATVDVVMNL 387
>sp|Q10856|Y2001_MYCTU Uncharacterized protein Rv2001/MT2057 OS=Mycobacterium tuberculosis
GN=Rv2001 PE=4 SV=1
Length = 250
Score = 32.3 bits (72), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 53/248 (21%), Positives = 90/248 (36%), Gaps = 55/248 (22%)
Query: 81 GLSYKEKFIVRCYEVGINKTATVETIANLLQEVGCNHAQSVGFSTDGFATTTTMRKLHLI 140
G Y + + ++ ++ ++ +A +QEVG H + ++H
Sbjct: 18 GYVYTTGWRLATTDIDEHQQLRLDGVARYIQEVGAEHLADAQLA-----------EVHPH 66
Query: 141 WVTARMHIEIYKYPAWSDVVEIETWCQSEGRIGTRRDWI-LKDYATGEVIGRATSK--WV 197
W+ R I++ + WC + + TR W ++ G GR ++ W+
Sbjct: 67 WIVLRTVIDVINPIELPSDITFHRWCAA---LSTR--WCSMRVQLQGSAGGRIETEGFWI 121
Query: 198 MMNQDTRRLQKVSDDVREEYLVFCPRELRLAFPEENSS-------SSRKISKLEDPAQYS 250
+N+DT +++DD R EN + I E P
Sbjct: 122 CVNKDTLTPSRLTDDCIA----------RFGSTTENHRLKWRPWLTGPNIDGTETPFPL- 170
Query: 251 RLGLIPRRADLDMNQHVNNVTYIGWLLESMPQDVIDTHELQTITLDYR-----------R 299
RR D+D +HVNN Y + E + Q T + + L+YR R
Sbjct: 171 ------RRTDIDPFEHVNNTIYWHGVHEILCQIPTLTAPYRAV-LEYRSPIKSGEPLTIR 223
Query: 300 ECQQDDVV 307
Q DDVV
Sbjct: 224 YEQHDDVV 231
>sp|C3K6N7|HTPG_PSEFS Chaperone protein HtpG OS=Pseudomonas fluorescens (strain SBW25)
GN=htpG PE=3 SV=1
Length = 636
Score = 31.6 bits (70), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 65/143 (45%), Gaps = 32/143 (22%)
Query: 187 EVIGRATSKWVMMNQDTRRLQKVSDDVREEYLVFCPRELRLAFPEENSSSSRKISKLEDP 246
EV+ RA++ W TR ++ D EEY F + EN S +K+E
Sbjct: 233 EVVNRASALW------TRPRTEIKD---EEYQEFYKH---IGHDYENPLSWSH-NKVEGK 279
Query: 247 AQYSRLGLIPRRADLDMNQ---------HVNNVTYIGWLLESMP------QDVIDTHELQ 291
+YS L +P RA D+ Q +V V + +P + V+D+++L
Sbjct: 280 LEYSSLLYVPARAPFDLYQREAPKGLKLYVQRVFVMDQAESFLPLYLRFIKGVVDSNDL- 338
Query: 292 TITLDYRREC-QQDDVVDSLTSA 313
+L+ RE Q+D ++DS+ SA
Sbjct: 339 --SLNVSREILQKDPIIDSMKSA 359
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 140,788,188
Number of Sequences: 539616
Number of extensions: 5930731
Number of successful extensions: 13769
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 13738
Number of HSP's gapped (non-prelim): 31
length of query: 370
length of database: 191,569,459
effective HSP length: 119
effective length of query: 251
effective length of database: 127,355,155
effective search space: 31966143905
effective search space used: 31966143905
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)