Query 017534
Match_columns 370
No_of_seqs 282 out of 1971
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 09:26:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017534.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017534hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02370 acyl-ACP thioesterase 100.0 1.9E-54 4E-59 433.3 33.4 284 65-369 121-405 (419)
2 PF01643 Acyl-ACP_TE: Acyl-ACP 100.0 7.4E-55 1.6E-59 415.5 25.8 261 81-366 1-261 (261)
3 COG3884 FatA Acyl-ACP thioeste 100.0 1.2E-35 2.6E-40 271.2 16.8 238 83-366 3-241 (250)
4 PRK10800 acyl-CoA thioesterase 100.0 2.2E-27 4.8E-32 202.6 18.0 128 83-217 2-129 (130)
5 TIGR02799 thio_ybgC tol-pal sy 99.9 1.7E-25 3.7E-30 188.9 16.0 124 84-215 1-125 (126)
6 COG0824 FcbC Predicted thioest 99.9 3.3E-25 7.2E-30 192.1 17.9 131 81-219 3-133 (137)
7 TIGR00051 acyl-CoA thioester h 99.9 9.4E-25 2E-29 181.2 15.6 117 87-210 1-117 (117)
8 PF13279 4HBT_2: Thioesterase- 99.9 3.8E-21 8.3E-26 161.3 16.8 119 90-217 1-121 (121)
9 PRK07531 bifunctional 3-hydrox 99.9 1.7E-21 3.6E-26 201.6 17.7 129 83-219 345-473 (495)
10 cd00586 4HBT 4-hydroxybenzoyl- 99.8 1.2E-17 2.5E-22 134.6 15.0 110 84-200 1-110 (110)
11 COG0824 FcbC Predicted thioest 99.7 5.7E-16 1.2E-20 134.3 11.7 96 251-369 7-115 (137)
12 PRK10800 acyl-CoA thioesterase 99.6 1E-15 2.2E-20 130.5 10.7 95 252-368 5-112 (130)
13 TIGR00051 acyl-CoA thioester h 99.6 1.2E-14 2.5E-19 120.4 11.1 93 254-368 2-107 (117)
14 PF13279 4HBT_2: Thioesterase- 99.6 1.2E-14 2.6E-19 121.7 10.0 92 256-369 1-106 (121)
15 TIGR02799 thio_ybgC tol-pal sy 99.6 2.1E-14 4.5E-19 121.0 11.0 94 252-368 3-110 (126)
16 cd03442 BFIT_BACH Brown fat-in 99.4 4.5E-11 9.8E-16 99.5 16.6 114 80-210 4-123 (123)
17 cd00586 4HBT 4-hydroxybenzoyl- 99.4 7.3E-12 1.6E-16 100.6 10.9 94 252-367 3-109 (110)
18 PRK07531 bifunctional 3-hydrox 99.3 1.9E-11 4.1E-16 126.9 12.4 96 251-368 347-454 (495)
19 cd03440 hot_dog The hotdog fol 99.0 1.8E-08 3.9E-13 75.9 13.6 97 86-196 3-99 (100)
20 PF03061 4HBT: Thioesterase su 98.9 1.9E-08 4.1E-13 77.2 11.9 79 98-190 1-79 (79)
21 cd03443 PaaI_thioesterase PaaI 98.7 5.7E-07 1.2E-11 73.6 14.3 100 83-197 13-112 (113)
22 PF01643 Acyl-ACP_TE: Acyl-ACP 98.7 7.3E-08 1.6E-12 92.2 10.1 98 79-196 161-259 (261)
23 cd03442 BFIT_BACH Brown fat-in 98.7 1.8E-07 3.8E-12 77.7 10.9 97 251-368 9-114 (123)
24 cd03440 hot_dog The hotdog fol 98.6 3.5E-07 7.6E-12 68.7 10.2 90 253-364 4-99 (100)
25 PF03061 4HBT: Thioesterase su 98.5 6.4E-07 1.4E-11 68.5 7.3 73 264-358 1-79 (79)
26 PLN02370 acyl-ACP thioesterase 98.4 2.3E-06 4.9E-11 87.0 12.9 136 187-368 102-256 (419)
27 PRK10694 acyl-CoA esterase; Pr 98.3 3.7E-05 7.9E-10 66.5 15.2 112 84-211 12-131 (133)
28 PLN02647 acyl-CoA thioesterase 98.2 0.0004 8.8E-09 71.1 23.3 221 89-317 99-363 (437)
29 cd03443 PaaI_thioesterase PaaI 98.1 3.7E-05 8E-10 62.8 10.9 92 251-365 15-112 (113)
30 COG3884 FatA Acyl-ACP thioeste 98.0 2E-05 4.4E-10 73.3 8.6 91 80-196 149-239 (250)
31 COG1607 Acyl-CoA hydrolase [Li 97.9 0.00043 9.4E-09 61.4 15.0 112 86-213 16-132 (157)
32 TIGR00369 unchar_dom_1 unchara 97.8 0.00087 1.9E-08 55.9 13.5 98 85-197 19-116 (117)
33 TIGR02286 PaaD phenylacetic ac 97.7 0.0011 2.3E-08 55.2 13.0 97 85-198 17-113 (114)
34 PRK10293 acyl-CoA esterase; Pr 97.3 0.011 2.4E-07 51.2 14.1 100 85-199 37-136 (136)
35 PRK11688 hypothetical protein; 97.1 0.013 2.9E-07 51.5 13.3 111 85-198 40-153 (154)
36 PRK10254 thioesterase; Provisi 97.1 0.031 6.8E-07 48.5 15.1 100 85-199 37-136 (137)
37 COG5496 Predicted thioesterase 96.8 0.058 1.3E-06 46.0 13.8 110 79-203 2-118 (130)
38 COG2050 PaaI HGG motif-contain 96.4 0.15 3.2E-06 44.0 14.3 104 85-202 37-140 (141)
39 KOG3328 HGG motif-containing t 96.4 0.069 1.5E-06 46.8 11.6 101 84-198 39-139 (148)
40 cd03449 R_hydratase (R)-hydrat 96.3 0.05 1.1E-06 45.3 10.4 57 140-197 69-127 (128)
41 TIGR02286 PaaD phenylacetic ac 96.1 0.12 2.5E-06 42.8 11.3 94 251-366 17-113 (114)
42 PLN02322 acyl-CoA thioesterase 95.8 0.48 1E-05 42.0 14.4 102 85-200 29-135 (154)
43 PF14539 DUF4442: Domain of un 95.2 0.33 7.2E-06 41.6 11.2 98 84-197 31-131 (132)
44 TIGR00369 unchar_dom_1 unchara 95.0 0.53 1.1E-05 38.9 11.5 93 250-365 18-116 (117)
45 COG4109 Predicted transcriptio 94.9 0.18 3.9E-06 50.2 9.6 107 74-197 323-429 (432)
46 cd00556 Thioesterase_II Thioes 94.8 0.16 3.4E-06 40.1 7.7 58 139-197 41-98 (99)
47 cd01288 FabZ FabZ is a 17kD be 94.8 0.96 2.1E-05 37.7 12.8 86 101-198 45-130 (131)
48 PLN02647 acyl-CoA thioesterase 94.7 1 2.3E-05 46.4 15.1 115 84-212 291-415 (437)
49 PF13622 4HBT_3: Thioesterase- 94.7 3.8 8.2E-05 38.3 19.0 59 141-202 34-92 (255)
50 cd03455 SAV4209 SAV4209 is a S 94.5 0.27 5.8E-06 41.1 8.7 55 141-196 67-122 (123)
51 PRK13691 (3R)-hydroxyacyl-ACP 94.4 0.51 1.1E-05 42.3 10.7 62 142-204 85-150 (166)
52 PRK10694 acyl-CoA esterase; Pr 94.3 0.68 1.5E-05 39.9 11.0 96 252-368 14-121 (133)
53 cd00493 FabA_FabZ FabA/Z, beta 93.8 2.8 6E-05 34.7 13.6 86 98-193 41-126 (131)
54 PLN02864 enoyl-CoA hydratase 93.5 8.5 0.00018 37.9 19.4 61 141-201 94-158 (310)
55 cd03447 FAS_MaoC FAS_MaoC, the 93.4 0.72 1.6E-05 39.2 9.4 53 142-195 69-122 (126)
56 PRK13692 (3R)-hydroxyacyl-ACP 93.4 1 2.2E-05 40.0 10.5 60 144-204 87-150 (159)
57 cd03441 R_hydratase_like (R)-h 93.4 0.77 1.7E-05 37.8 9.3 56 139-195 66-125 (127)
58 cd03454 YdeM YdeM is a Bacillu 93.3 0.45 9.8E-06 40.5 8.0 51 146-197 81-138 (140)
59 TIGR02447 yiiD_Cterm thioester 93.2 3.6 7.9E-05 35.4 13.6 95 86-199 26-137 (138)
60 cd03446 MaoC_like MoaC_like 92.9 0.62 1.4E-05 39.5 8.3 51 146-197 83-139 (140)
61 cd03453 SAV4209_like SAV4209_l 92.8 0.79 1.7E-05 38.6 8.6 52 143-195 70-125 (127)
62 PRK00006 fabZ (3R)-hydroxymyri 92.5 6.2 0.00014 33.9 16.3 59 140-200 87-146 (147)
63 cd03451 FkbR2 FkbR2 is a Strep 92.2 0.77 1.7E-05 39.2 8.0 52 146-198 84-142 (146)
64 PRK11688 hypothetical protein; 92.1 2 4.4E-05 37.6 10.7 92 251-365 40-152 (154)
65 TIGR01750 fabZ beta-hydroxyacy 92.1 4.2 9.1E-05 34.6 12.4 87 100-197 52-139 (140)
66 PRK04424 fatty acid biosynthes 92.0 1.7 3.6E-05 39.6 10.3 58 139-198 124-181 (185)
67 KOG4366 Predicted thioesterase 91.8 0.017 3.8E-07 52.3 -2.8 87 258-365 59-158 (213)
68 PF13452 MaoC_dehydrat_N: N-te 90.2 1.3 2.9E-05 37.1 7.4 52 139-191 73-131 (132)
69 cd03449 R_hydratase (R)-hydrat 90.2 2.3 4.9E-05 35.1 8.7 55 289-363 71-125 (128)
70 cd03452 MaoC_C MaoC_C The C-t 89.8 1.9 4E-05 37.2 8.1 52 146-198 81-138 (142)
71 PRK08190 bifunctional enoyl-Co 89.4 2.6 5.6E-05 43.9 10.1 65 141-206 83-149 (466)
72 KOG4366 Predicted thioesterase 88.5 0.07 1.5E-06 48.4 -1.8 103 89-200 56-161 (213)
73 cd03445 Thioesterase_II_repeat 88.3 3.6 7.8E-05 33.1 8.3 53 142-196 40-92 (94)
74 cd03455 SAV4209 SAV4209 is a S 87.2 5.8 0.00013 32.9 9.2 55 288-363 67-121 (123)
75 PRK10293 acyl-CoA esterase; Pr 86.7 18 0.00038 31.2 12.2 94 249-366 35-135 (136)
76 TIGR00189 tesB acyl-CoA thioes 85.7 33 0.00071 32.5 16.9 54 142-197 45-98 (271)
77 COG1607 Acyl-CoA hydrolase [Li 85.1 7.4 0.00016 34.7 9.1 68 252-319 16-88 (157)
78 KOG3328 HGG motif-containing t 84.5 3.2 6.9E-05 36.5 6.4 92 251-364 40-137 (148)
79 cd03453 SAV4209_like SAV4209_l 83.8 8.4 0.00018 32.2 8.6 58 288-363 68-125 (127)
80 cd03447 FAS_MaoC FAS_MaoC, the 82.8 11 0.00024 31.9 9.0 54 289-363 69-122 (126)
81 COG2050 PaaI HGG motif-contain 82.5 8.9 0.00019 32.8 8.4 95 251-368 37-138 (141)
82 cd03441 R_hydratase_like (R)-h 82.4 17 0.00037 29.5 9.9 58 287-362 67-124 (127)
83 PF07977 FabA: FabA-like domai 79.5 37 0.00081 28.7 12.9 88 98-193 47-138 (138)
84 PRK10254 thioesterase; Provisi 79.2 33 0.00072 29.6 10.8 92 250-365 36-134 (137)
85 PF03756 AfsA: A-factor biosyn 77.9 41 0.00088 28.3 12.3 89 97-198 39-132 (132)
86 cd03446 MaoC_like MoaC_like 77.3 16 0.00034 30.7 8.3 55 294-364 84-138 (140)
87 COG2030 MaoC Acyl dehydratase 77.3 17 0.00038 31.9 8.7 58 140-199 93-155 (159)
88 cd01289 FabA_like Domain of un 76.5 48 0.001 28.4 11.9 89 98-196 44-134 (138)
89 cd00556 Thioesterase_II Thioes 75.0 23 0.00049 27.5 8.1 54 288-363 43-96 (99)
90 cd03451 FkbR2 FkbR2 is a Strep 73.4 19 0.0004 30.5 7.7 58 293-365 84-141 (146)
91 PRK00006 fabZ (3R)-hydroxymyri 72.6 21 0.00045 30.5 7.9 52 293-367 94-145 (147)
92 PRK13692 (3R)-hydroxyacyl-ACP 72.5 21 0.00045 31.6 8.0 56 292-365 88-143 (159)
93 PF13452 MaoC_dehydrat_N: N-te 71.8 12 0.00025 31.3 6.0 55 290-359 77-131 (132)
94 PLN02322 acyl-CoA thioesterase 71.1 74 0.0016 28.1 11.2 69 250-318 28-101 (154)
95 PRK13188 bifunctional UDP-3-O- 70.6 1.1E+02 0.0025 32.0 13.9 57 141-199 402-460 (464)
96 cd03454 YdeM YdeM is a Bacillu 69.2 24 0.00052 29.8 7.4 57 293-364 81-137 (140)
97 PRK13691 (3R)-hydroxyacyl-ACP 68.8 31 0.00067 30.7 8.3 57 292-366 88-144 (166)
98 PRK04424 fatty acid biosynthes 68.0 27 0.00059 31.7 7.9 53 289-364 127-179 (185)
99 cd03444 Thioesterase_II_repeat 67.9 30 0.00066 28.1 7.5 57 140-197 47-103 (104)
100 cd03452 MaoC_C MaoC_C The C-t 67.4 25 0.00055 30.1 7.3 57 293-365 81-137 (142)
101 cd01288 FabZ FabZ is a 17kD be 67.3 27 0.00059 28.7 7.3 52 290-364 77-128 (131)
102 COG1946 TesB Acyl-CoA thioeste 66.1 1.4E+02 0.003 29.3 14.0 172 141-314 55-252 (289)
103 PRK10526 acyl-CoA thioesterase 64.9 26 0.00056 33.9 7.6 55 141-197 55-109 (286)
104 COG0764 FabA 3-hydroxymyristoy 63.1 97 0.0021 27.2 10.1 61 139-201 85-146 (147)
105 cd03448 HDE_HSD HDE_HSD The R 60.4 47 0.001 27.9 7.5 47 142-193 71-117 (122)
106 cd01287 FabA FabA, beta-hydrox 58.1 1.3E+02 0.0028 26.3 12.8 94 98-199 49-147 (150)
107 TIGR01750 fabZ beta-hydroxyacy 56.0 68 0.0015 27.0 7.9 49 293-364 90-138 (140)
108 PF01575 MaoC_dehydratas: MaoC 55.6 26 0.00056 29.0 5.1 35 139-173 74-108 (122)
109 PRK08190 bifunctional enoyl-Co 55.4 69 0.0015 33.4 9.2 58 289-366 84-141 (466)
110 TIGR02278 PaaN-DH phenylacetic 54.9 37 0.00079 37.1 7.3 51 146-197 604-660 (663)
111 COG3777 Uncharacterized conser 54.6 23 0.0005 33.9 4.9 168 144-364 81-273 (273)
112 PRK11563 bifunctional aldehyde 53.8 41 0.0009 36.7 7.5 50 147-197 617-672 (675)
113 PF14539 DUF4442: Domain of un 51.8 39 0.00085 28.7 5.7 92 251-365 32-131 (132)
114 COG4109 Predicted transcriptio 50.8 36 0.00078 34.4 5.8 66 253-318 336-405 (432)
115 PF13622 4HBT_3: Thioesterase- 48.9 1.4E+02 0.003 27.7 9.4 54 143-197 200-254 (255)
116 cd03450 NodN NodN (nodulation 47.0 1.9E+02 0.0042 25.1 9.6 30 140-169 84-113 (149)
117 cd00493 FabA_FabZ FabA/Z, beta 46.7 94 0.002 25.3 7.2 49 290-361 78-126 (131)
118 cd03448 HDE_HSD HDE_HSD The R 46.1 1.1E+02 0.0024 25.6 7.5 25 289-313 71-95 (122)
119 TIGR00189 tesB acyl-CoA thioes 45.0 1.1E+02 0.0023 28.9 8.1 56 142-198 215-270 (271)
120 PLN02864 enoyl-CoA hydratase 44.1 95 0.0021 30.5 7.7 51 142-197 254-304 (310)
121 COG1946 TesB Acyl-CoA thioeste 43.0 2.7E+02 0.0059 27.3 10.4 103 87-199 179-283 (289)
122 PF09500 YiiD_Cterm: Putative 42.9 2.3E+02 0.005 24.8 12.8 88 94-199 39-143 (144)
123 PLN02868 acyl-CoA thioesterase 40.4 84 0.0018 32.0 7.0 55 142-198 182-236 (413)
124 COG2030 MaoC Acyl dehydratase 40.1 1.5E+02 0.0032 26.0 7.6 60 289-366 95-154 (159)
125 PF02551 Acyl_CoA_thio: Acyl-C 39.3 1.9E+02 0.004 25.1 7.8 53 143-196 77-130 (131)
126 PRK13693 (3R)-hydroxyacyl-ACP 38.5 2.5E+02 0.0055 24.0 9.3 51 144-195 81-138 (142)
127 PF03756 AfsA: A-factor biosyn 38.2 2.4E+02 0.0051 23.5 8.4 61 288-366 72-132 (132)
128 PF01575 MaoC_dehydratas: MaoC 35.5 67 0.0014 26.5 4.5 28 288-315 76-103 (122)
129 PF07977 FabA: FabA-like domai 33.1 1.6E+02 0.0035 24.7 6.6 26 290-315 86-112 (138)
130 COG5496 Predicted thioesterase 32.9 3.2E+02 0.007 23.6 8.7 56 287-365 57-112 (130)
131 TIGR02447 yiiD_Cterm thioester 32.8 2.8E+02 0.006 23.6 8.0 99 252-366 26-136 (138)
132 PRK10526 acyl-CoA thioesterase 27.7 5.6E+02 0.012 24.6 12.1 59 140-199 225-283 (286)
133 KOG2763 Acyl-CoA thioesterase 26.8 6.3E+02 0.014 25.6 10.3 100 105-211 31-136 (357)
134 cd03450 NodN NodN (nodulation 25.5 2.3E+02 0.005 24.6 6.4 26 291-316 88-113 (149)
135 PF14765 PS-DH: Polyketide syn 25.4 3.6E+02 0.0079 25.1 8.3 55 140-195 229-284 (295)
136 PF10648 Gmad2: Immunoglobulin 24.5 2.1E+02 0.0046 22.7 5.4 46 148-195 3-49 (88)
137 PF11456 DUF3019: Protein of u 24.0 2E+02 0.0043 23.6 5.2 34 177-210 66-99 (102)
138 TIGR02278 PaaN-DH phenylacetic 21.2 3.3E+02 0.0072 29.8 7.8 55 293-363 604-658 (663)
139 PRK13188 bifunctional UDP-3-O- 21.1 4.5E+02 0.0097 27.6 8.4 52 293-366 408-459 (464)
140 PRK11563 bifunctional aldehyde 21.0 2.7E+02 0.0059 30.4 7.1 56 293-364 616-671 (675)
No 1
>PLN02370 acyl-ACP thioesterase
Probab=100.00 E-value=1.9e-54 Score=433.28 Aligned_cols=284 Identities=46% Similarity=0.840 Sum_probs=236.9
Q ss_pred CCccccccccCCCCCCCccEEEEEEeeecCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCCCCccchhhhhhcCeEEEeE
Q 017534 65 PCSLADRLRLGTLTEDGLSYKEKFIVRCYEVGINKTATVETIANLLQEVGCNHAQSVGFSTDGFATTTTMRKLHLIWVTA 144 (370)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~f~~~~~Vr~~D~D~~Ghv~~~~yl~~~qea~~~~~~~lG~~~~~~~~~~~l~~~gl~wVv~ 144 (370)
..-|.|.+++|++.+||+.|+++|+||+||||.+|++++..+++||||++..|++.+|+..++|+.+++|.+.|++|||+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~y~~~f~Ir~yEvD~~g~lsl~~L~n~lQd~A~~Hs~~lGll~~Gfg~~~~m~~~gl~WVLt 200 (419)
T PLN02370 121 SDMLIDPFGIGRIVQDGLVFRQNFSIRSYEIGADRTASIETLMNHLQETALNHVKTAGLLGDGFGSTPEMSKRNLIWVVT 200 (419)
T ss_pred CcccccccccCceeccCcEEEEEEEEeeEEECCCCCCCHHHHHHHHHHHHHHHHHHhCccccccccHHHHHhCCceEEEE
Confidence 36799999999999999999999999999999999999999999999999999999998444444445788999999999
Q ss_pred eeeeeEccccCCCCEEEEEEEEEEeCCeEEEEEEEEEECCCCcEEEEEEEEEEEEeCCCCceecCCHHHHHHHhhcCccc
Q 017534 145 RMHIEIYKYPAWSDVVEIETWCQSEGRIGTRRDWILKDYATGEVIGRATSKWVMMNQDTRRLQKVSDDVREEYLVFCPRE 224 (370)
Q Consensus 145 r~~Iey~r~p~~gD~V~I~Twv~~~~r~~~~R~f~I~d~~~Gevla~a~s~wV~vD~~trRp~rip~e~~e~~~~~~~~~ 224 (370)
+++|+|.|+|+|||+|+|+||+.+++++++.|+|+|+|.++|+++++|.++||+||++||||+|||+++++.+..+..+.
T Consensus 201 r~~I~~~R~P~~gD~V~V~Twv~~~~k~~~~Rdf~I~D~~~Ge~la~A~SvWV~mD~~TRRpvRIP~Evr~~i~~y~~~~ 280 (419)
T PLN02370 201 RMQVLVDRYPTWGDVVQVDTWVSASGKNGMRRDWLVRDCKTGETLTRASSVWVMMNKLTRRLSKIPEEVRGEIEPYFLNS 280 (419)
T ss_pred EEEEEeCcCCCCCCEEEEEEEEeeCCCCEEEEEEEEEECCCCeEEEEEEEEEEEEECCCCcccCCCHHHHHhhhhccccc
Confidence 99999999999999999999999999999999999999447999999999999999999999999999976654322111
Q ss_pred ccccCCccCccccccCCCCCCc-ccceeeeeeeecccCcCCcccchhhHHHHHHHhCCcccccccceEEEEEEeccccCC
Q 017534 225 LRLAFPEENSSSSRKISKLEDP-AQYSRLGLIPRRADLDMNQHVNNVTYIGWLLESMPQDVIDTHELQTITLDYRRECQQ 303 (370)
Q Consensus 225 ~~l~~p~e~~~~~~ki~~~~~~-~~~~~~~~~Vr~sDiD~ngHVNN~~Y~~w~~~~~~~~~~~~~~l~~~~i~Y~~e~~~ 303 (370)
...++ ...+|++++++. .++.+..++|||+|||.||||||++|++|++|++|.+++.++.+.+++|.|++||.+
T Consensus 281 -~~~i~----~~~~kl~~l~~~~~~~~~~~~~VRysDLD~NgHVNNvkYi~Wild~lP~e~l~~~~l~~i~I~Y~kE~~~ 355 (419)
T PLN02370 281 -DPVVN----EDSRKLPKLDDKTADYIRKGLTPRWSDLDVNQHVNNVKYIGWILESAPPPIMESHELAAITLEYRRECGR 355 (419)
T ss_pred -ccccc----cccccCCccccccccceeeeeeecHHHCcccCccccHHHHHHHHhhCchhhhhcceEEEEEEEEcccCCC
Confidence 00121 134667766543 123345699999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEEeeccCCCcccccccCCCCCCcccCCCCCceEEEEEEEECCCCcEEEEEEEEEEeccC
Q 017534 304 DDVVDSLTSAEPFEDAEPVSKLQGTNGSPAITGDKEDNHQFLHLLRLSGDGSEINRGRSVWRKKPA 369 (370)
Q Consensus 304 gd~v~v~t~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~l~~~~dG~~ia~~~t~W~~~~~ 369 (370)
||.|.+.+.....+... .+ .+....+.|.++ ..||+++++++|+|++|.+
T Consensus 356 gd~V~s~~~~~~~~~~~-----~~----------~~~~~~~~h~~~-~~dG~e~a~a~t~Wr~~~~ 405 (419)
T PLN02370 356 DSVLQSLTAVSGTGIGN-----LG----------TAGDVECQHLLR-LEDGAEIVRGRTEWRPKHA 405 (419)
T ss_pred CCEEEEEEeeccccccc-----cc----------CCCcceEEEEEE-cCCCeEEEEEEEEEEECCc
Confidence 99999987653211000 00 112245788775 6799999999999999853
No 2
>PF01643 Acyl-ACP_TE: Acyl-ACP thioesterase; InterPro: IPR002864 This entry represents various acyl-acyl carrier protein (ACP) thioesterases (TE) which terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid []. These proteins contain a duplication of two 4HBT-like domains.; GO: 0016790 thiolester hydrolase activity, 0006633 fatty acid biosynthetic process; PDB: 2ESS_A 2OWN_A.
Probab=100.00 E-value=7.4e-55 Score=415.48 Aligned_cols=261 Identities=36% Similarity=0.665 Sum_probs=190.5
Q ss_pred CccEEEEEEeeecCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCCCCccchhhhhhcCeEEEeEeeeeeEccccCCCCEE
Q 017534 81 GLSYKEKFIVRCYEVGINKTATVETIANLLQEVGCNHAQSVGFSTDGFATTTTMRKLHLIWVTARMHIEIYKYPAWSDVV 160 (370)
Q Consensus 81 ~~~f~~~~~Vr~~D~D~~Ghv~~~~yl~~~qea~~~~~~~lG~~~~~~~~~~~l~~~gl~wVv~r~~Iey~r~p~~gD~V 160 (370)
|+.|+++++|+++|||.+|++++..+++|||+++..|+..+|++.+.++++|+|.+.|++|||++++|+|.++|.+||+|
T Consensus 1 g~~y~~~~~v~~~e~d~~~~l~l~~l~~~~qe~a~~h~~~lG~~~~~~~~~~~l~~~~~~Wvl~r~~i~i~r~P~~~e~i 80 (261)
T PF01643_consen 1 GLVYEKEFTVRYYECDPNGRLKLSALLNYFQEAATEHAESLGFGMDYFGSTPELKKQGLAWVLSRYQIEIHRYPRWGEKI 80 (261)
T ss_dssp ---EEEEEE--GGGB-TTSBB-HHHHHHHHHHHHHHHHHHTT-SHHH------HHCTTEEEEEEEEEEEESS--BTT-EE
T ss_pred CceEEEEEEEcceeeCCCCCCCHHHHHHHHHHHHHHHHHHhCCCcccchhhhhHhhcCcEEEEEEEEEEEEecCCCCCEE
Confidence 56899999999999999999999999999999999999999999886656667899999999999999999999999999
Q ss_pred EEEEEEEEeCCeEEEEEEEEEECCCCcEEEEEEEEEEEEeCCCCceecCCHHHHHHHhhcCcccccccCCccCccccccC
Q 017534 161 EIETWCQSEGRIGTRRDWILKDYATGEVIGRATSKWVMMNQDTRRLQKVSDDVREEYLVFCPRELRLAFPEENSSSSRKI 240 (370)
Q Consensus 161 ~I~Twv~~~~r~~~~R~f~I~d~~~Gevla~a~s~wV~vD~~trRp~rip~e~~e~~~~~~~~~~~l~~p~e~~~~~~ki 240 (370)
+|+||+.+.+++++.|+|.|+|.++|+++++|.|.||+||++||||+|+|+++.+.|...+|+. ++.+....++++
T Consensus 81 ~i~Tw~~~~~~~~~~R~f~i~d~~~G~~l~~a~s~WvliD~~trr~~ri~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 156 (261)
T PF01643_consen 81 TIETWPSGFKRFFAYRDFEIYDAEDGELLARATSIWVLIDLETRRPVRIPEEIIEEYGPFFPDE----LPEEDIRKLPKI 156 (261)
T ss_dssp EEEEEEEEE-SSEEEEEEEEE--TTS-EEEEEEEEEEEEETTT-SEE---GGCTCCGGGGB--------T-EESSS----
T ss_pred EEEEEeccCCCcEEEEEEEEEECCCCcEEEEEEEEEEEEEhhhCCcccCCHHHHhhhhhhcccc----cccccccccccc
Confidence 9999999999999999999998779999999999999999999999999999888876444431 222222234455
Q ss_pred CCCCCcccceeeeeeeecccCcCCcccchhhHHHHHHHhCCcccccccceEEEEEEeccccCCCCEEEEEEEeeccCCCc
Q 017534 241 SKLEDPAQYSRLGLIPRRADLDMNQHVNNVTYIGWLLESMPQDVIDTHELQTITLDYRRECQQDDVVDSLTSAEPFEDAE 320 (370)
Q Consensus 241 ~~~~~~~~~~~~~~~Vr~sDiD~ngHVNN~~Y~~w~~~~~~~~~~~~~~l~~~~i~Y~~e~~~gd~v~v~t~v~~~~~~~ 320 (370)
|+....+......++||++|||.||||||++|++|++|++|.+++..+.+++++|.|++|+.+||+|.+.+.++..+.
T Consensus 157 ~~~~~~~~~~~~~~~vr~sDiD~N~HVNN~~Yl~w~~d~lp~~~~~~~~~~~i~I~y~~E~~~gd~i~~~~~~~~~~~-- 234 (261)
T PF01643_consen 157 PKNPPEEPEFEKEFTVRYSDIDMNGHVNNARYLDWALDALPEEFLEKYQIKSIDINYKKEIRYGDTITSYTEVEKDEE-- 234 (261)
T ss_dssp ------TTSECEEEE--GGGEETTTCE-HHHHHHHHHCCS-HHHHCCEEEEEEEEEE-S--BTT-EEEEEEEEEEECC--
T ss_pred cccCChhhheeecccccHHHCCCCCCcCHHHHHHHHHHhCcchhhccCCcEEEEEEEccccCCCCEEEEEEEEccccc--
Confidence 432222333457899999999999999999999999999999999999999999999999999999999988764321
Q ss_pred ccccccCCCCCCcccCCCCCceEEEEEEEECCCCcEEEEEEEEEEe
Q 017534 321 PVSKLQGTNGSPAITGDKEDNHQFLHLLRLSGDGSEINRGRSVWRK 366 (370)
Q Consensus 321 ~~~~~~~~~g~~~~~~~~~~~~~~~h~l~~~~dG~~ia~~~t~W~~ 366 (370)
+....+.|.|+. ++|+++++++|+|++
T Consensus 235 ------------------~~~~~~~h~i~~-~~g~~~~~~~~~W~~ 261 (261)
T PF01643_consen 235 ------------------EDGLSTLHEIRN-EDGEEVARARTEWQK 261 (261)
T ss_dssp ------------------TTEEEEEEEEEC-T-TCEEEEEEEEEE-
T ss_pred ------------------CCceEEEEEEEc-CCCceEEEEEEEEcC
Confidence 245789999965 449999999999986
No 3
>COG3884 FatA Acyl-ACP thioesterase [Lipid metabolism]
Probab=100.00 E-value=1.2e-35 Score=271.18 Aligned_cols=238 Identities=23% Similarity=0.388 Sum_probs=198.6
Q ss_pred cEEEEEEeeecCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCCCCccchhhhhhcCeEEEeEeeeeeEccccCCCCEEEE
Q 017534 83 SYKEKFIVRCYEVGINKTATVETIANLLQEVGCNHAQSVGFSTDGFATTTTMRKLHLIWVTARMHIEIYKYPAWSDVVEI 162 (370)
Q Consensus 83 ~f~~~~~Vr~~D~D~~Ghv~~~~yl~~~qea~~~~~~~lG~~~~~~~~~~~l~~~gl~wVv~r~~Iey~r~p~~gD~V~I 162 (370)
.++..+.|.+++.|++|++..+..+.+..+++..+...+|-.-.. .+.+.++.|+|.++.|++.+||.++|.|+|
T Consensus 3 ~~k~~~~vP~~~~d~~g~i~~~~~l~l~~~i~~~Qsi~lg~~~~~-----~lee~~l~WiV~~~~i~~ir~pef~e~iti 77 (250)
T COG3884 3 VDKQNMPVPFYWPDAVGDIDITSRLRLDLQIRGIQSIGLGQLDVA-----GLEEYHLLWIVRRTEIDVIRPPEFGEMITI 77 (250)
T ss_pred chhhcCCCccchhhhcCCcchhhhhhhhhhhcceeecccchhhhh-----hHhhcCceEEEEEEEEEEeeccccCCcceE
Confidence 355667888999999999999999999999988777666633221 467899999999999999999999999999
Q ss_pred EEEEEEeCCeEEEEEEEEEECCCCcEEEEEEEEEEEEeCCCCceecCCHHHHHHHhhcCcccccccCCccCccccccCCC
Q 017534 163 ETWCQSEGRIGTRRDWILKDYATGEVIGRATSKWVMMNQDTRRLQKVSDDVREEYLVFCPRELRLAFPEENSSSSRKISK 242 (370)
Q Consensus 163 ~Twv~~~~r~~~~R~f~I~d~~~Gevla~a~s~wV~vD~~trRp~rip~e~~e~~~~~~~~~~~l~~p~e~~~~~~ki~~ 242 (370)
+||+.++.++++.|+|.+.+ .|+.++.+.+.|++||.+||||.++++++...|..... ..++..| +.
T Consensus 78 ~t~~~s~~~ffcyrrf~~~~--~gg~Lie~~a~wilmn~dTrkp~ri~~d~la~~~~t~~-~k~~r~~----------~~ 144 (250)
T COG3884 78 ETWCSSISNFFCYRRFRLDG--RGGGLIEIEAFWILMNRDTRKPARITDDLLAPFNLTTE-KKRLRWP----------KY 144 (250)
T ss_pred EEeeccccceEEEEEEEEec--CCCcEEEEEEEEEEEccccccceeccHHHhhhhcccch-hheeccc----------cc
Confidence 99999999999999999996 78889999999999999999999999999998875321 1122221 11
Q ss_pred CCCcccce-eeeeeeecccCcCCcccchhhHHHHHHHhCCcccccccceEEEEEEeccccCCCCEEEEEEEeeccCCCcc
Q 017534 243 LEDPAQYS-RLGLIPRRADLDMNQHVNNVTYIGWLLESMPQDVIDTHELQTITLDYRRECQQDDVVDSLTSAEPFEDAEP 321 (370)
Q Consensus 243 ~~~~~~~~-~~~~~Vr~sDiD~ngHVNN~~Y~~w~~~~~~~~~~~~~~l~~~~i~Y~~e~~~gd~v~v~t~v~~~~~~~~ 321 (370)
+..+.+.+ ...+.||+.|||+||||||++|++|++|.++.+++..+.+.++.+.|.+|+.+|+++++.+.+.++|.
T Consensus 145 l~~~~e~s~~~~f~vR~~DID~f~HvNNskY~~wi~e~l~~~~~~~~~p~r~~l~y~keva~G~~iti~~e~~~~~s--- 221 (250)
T COG3884 145 LSSRLEASEIHDFPVRYTDIDMFGHVNNSKYWSWIEEVLGSEFLKLYGPLRLTLEYVKEVAPGEKITIVYEVHPLES--- 221 (250)
T ss_pred cCccccccccccceeEEEeeccccccccceehHHHHHHHhhhhHhhcccceeEEEEEcccCCCCeEEEEEEEcccCc---
Confidence 11222222 35799999999999999999999999999999999999999999999999999999999998877642
Q ss_pred cccccCCCCCCcccCCCCCceEEEEEEEECCCCcEEEEEEEEEEe
Q 017534 322 VSKLQGTNGSPAITGDKEDNHQFLHLLRLSGDGSEINRGRSVWRK 366 (370)
Q Consensus 322 ~~~~~~~~g~~~~~~~~~~~~~~~h~l~~~~dG~~ia~~~t~W~~ 366 (370)
.|.+ ..||++.+.+-.+|..
T Consensus 222 -----------------------~~~f--~~d~~v~~lt~i~~d~ 241 (250)
T COG3884 222 -----------------------KHQF--TSDGQVNALTYIVGDE 241 (250)
T ss_pred -----------------------eeee--cCCcceEEEEEEEehh
Confidence 3444 2389999999999976
No 4
>PRK10800 acyl-CoA thioesterase YbgC; Provisional
Probab=99.95 E-value=2.2e-27 Score=202.63 Aligned_cols=128 Identities=12% Similarity=0.151 Sum_probs=120.3
Q ss_pred cEEEEEEeeecCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCCCCccchhhhhhcCeEEEeEeeeeeEccccCCCCEEEE
Q 017534 83 SYKEKFIVRCYEVGINKTATVETIANLLQEVGCNHAQSVGFSTDGFATTTTMRKLHLIWVTARMHIEIYKYPAWSDVVEI 162 (370)
Q Consensus 83 ~f~~~~~Vr~~D~D~~Ghv~~~~yl~~~qea~~~~~~~lG~~~~~~~~~~~l~~~gl~wVv~r~~Iey~r~p~~gD~V~I 162 (370)
+|..+++|+|+|||.+|||+|++|++|||+|+.+++..+|++.. .+.+.|++|++++++|+|++|+.+||+|+|
T Consensus 2 ~f~~~~~Vr~~d~D~~Ghv~~~~y~~~~e~a~~~~~~~~g~~~~------~~~~~~~~~~v~~~~i~y~~~~~~~d~i~v 75 (130)
T PRK10800 2 LFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQ------ALLAERVAFVVRKMTVEYYAPARLDDMLEV 75 (130)
T ss_pred ceEEEEEEeehhcCCCCeEehHHHHHHHHHHHHHHHHHcCCCHH------HHHhCCCEEEEEEEEEEEcCcccCCCEEEE
Confidence 47889999999999999999999999999999999999998764 456789999999999999999999999999
Q ss_pred EEEEEEeCCeEEEEEEEEEECCCCcEEEEEEEEEEEEeCCCCceecCCHHHHHHH
Q 017534 163 ETWCQSEGRIGTRRDWILKDYATGEVIGRATSKWVMMNQDTRRLQKVSDDVREEY 217 (370)
Q Consensus 163 ~Twv~~~~r~~~~R~f~I~d~~~Gevla~a~s~wV~vD~~trRp~rip~e~~e~~ 217 (370)
+||+.++++.++...|++++ .+|+++++|.++||++|.+++||+++|+++++.|
T Consensus 76 ~t~v~~~~~~s~~~~~~i~~-~~g~~~a~~~~~~v~~d~~~~r~~~iP~~l~~~~ 129 (130)
T PRK10800 76 QSEITSMRGTSLTFTQRIVN-AEGTLLNEAEVLIVCVDPLKMKPRALPKSIVAEF 129 (130)
T ss_pred EEEEEeeCcEEEEEEEEEEc-CCCeEEEEEEEEEEEEECCCCcCcCCCHHHHHhh
Confidence 99999999999888899998 7899999999999999999999999999998865
No 5
>TIGR02799 thio_ybgC tol-pal system-associated acyl-CoA thioesterase. The tol-pal system consists of five critical genes. Inner membrane proteins TolQ and TolR convert protomotive force to energy that is transduced through TolA to an outer membrane complex of TolB and Pal. The system is known to be required to maintain outer membrane integrity. In a system with several homologous parts, ExbB and ExbD transduces energy through TonB to a variety of outer membrane proteins, many of which are siderophore receptors. The tol-pal system therefore may also be involved in transport. This family consists of a protein nearly always found in operons with the genes of the tol-pal system. The significance of this thioesterase to the tol-pal system is unclear, but either of two observations may be relevant. First, Pal, or peptidoglycan-associated lipoprotein, has a conserved N-terminal cleavage and acylation that makes it a lipoprotein. Second, the tol-pal system is implicated not only in the import o
Probab=99.94 E-value=1.7e-25 Score=188.93 Aligned_cols=124 Identities=10% Similarity=0.172 Sum_probs=116.0
Q ss_pred EEEEEEeeecCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCCCCccchhhhh-hcCeEEEeEeeeeeEccccCCCCEEEE
Q 017534 84 YKEKFIVRCYEVGINKTATVETIANLLQEVGCNHAQSVGFSTDGFATTTTMR-KLHLIWVTARMHIEIYKYPAWSDVVEI 162 (370)
Q Consensus 84 f~~~~~Vr~~D~D~~Ghv~~~~yl~~~qea~~~~~~~lG~~~~~~~~~~~l~-~~gl~wVv~r~~Iey~r~p~~gD~V~I 162 (370)
|+.+++|||+|||++|||+++.|++||++|+..++.++|++.+ .+. +.|.+|++++++|+|++|+++||+|.|
T Consensus 1 f~~~~~vr~~d~D~~Ghv~~~~y~~~~~~a~~~~~~~~g~~~~------~~~~~~~~~~vv~~~~i~y~~~~~~gd~v~v 74 (126)
T TIGR02799 1 FRWPIRVYYEDTDAGGVVYHANYLKFMERARTEWLRALGFEQS------ALLEETGLVFVVRSMELDYLKPARLDDLLTV 74 (126)
T ss_pred CcceEEEEEeccCCCceEEechHHHHHHHHHHHHHHHcCCCHH------HHhhcCCcEEEEEEEEEEEcCcccCCCEEEE
Confidence 4568899999999999999999999999999999999999864 353 569999999999999999999999999
Q ss_pred EEEEEEeCCeEEEEEEEEEECCCCcEEEEEEEEEEEEeCCCCceecCCHHHHH
Q 017534 163 ETWCQSEGRIGTRRDWILKDYATGEVIGRATSKWVMMNQDTRRLQKVSDDVRE 215 (370)
Q Consensus 163 ~Twv~~~~r~~~~R~f~I~d~~~Gevla~a~s~wV~vD~~trRp~rip~e~~e 215 (370)
+||+.+.++.++.+.|.|++ +|+++|+|.++||++|.+++||+++|+++++
T Consensus 75 ~~~v~~~~~~~~~~~~~i~~--~g~~~a~~~~~~v~vd~~~~~~~~~p~~~~~ 125 (126)
T TIGR02799 75 TTRVVELKGASLVFAQEVRR--GDTLLCEATVEVACVDASDMRPRRLPAELRA 125 (126)
T ss_pred EEEEEecCceEEEEEEEEEe--CCEEEEEEEEEEEEEECCCCcCcCCCHHHhh
Confidence 99999999999999999995 7899999999999999999999999999875
No 6
>COG0824 FcbC Predicted thioesterase [General function prediction only]
Probab=99.93 E-value=3.3e-25 Score=192.15 Aligned_cols=131 Identities=12% Similarity=0.219 Sum_probs=122.9
Q ss_pred CccEEEEEEeeecCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCCCCccchhhhhhcCeEEEeEeeeeeEccccCCCCEE
Q 017534 81 GLSYKEKFIVRCYEVGINKTATVETIANLLQEVGCNHAQSVGFSTDGFATTTTMRKLHLIWVTARMHIEIYKYPAWSDVV 160 (370)
Q Consensus 81 ~~~f~~~~~Vr~~D~D~~Ghv~~~~yl~~~qea~~~~~~~lG~~~~~~~~~~~l~~~gl~wVv~r~~Iey~r~p~~gD~V 160 (370)
+..|..+++|+|+|||++|||||++|+.|||+|++++++.+|+++. ++.+.|+.|++++++|+|++|.++||.+
T Consensus 3 ~~~~~~~~~V~~~d~D~~GhV~~a~Yl~~fE~ar~~~l~~~g~~~~------~~~~~~~~~~v~~~~i~y~~p~~~~d~l 76 (137)
T COG0824 3 SFPFSTPIRVRYEDTDAMGHVNNANYLVFFEEARTEFLRALGFDYA------DLEEGGIAFVVVEAEIDYLRPARLGDVL 76 (137)
T ss_pred CcceEEEEEEEhhhcCcccEEecchHHHHHHHHHHHHHHHcCCCHH------HHhhCCcEEEEEEEEeEECCCccCCCEE
Confidence 4568899999999999999999999999999999999999999875 5677789999999999999999999999
Q ss_pred EEEEEEEEeCCeEEEEEEEEEECCCCcEEEEEEEEEEEEeCCCCceecCCHHHHHHHhh
Q 017534 161 EIETWCQSEGRIGTRRDWILKDYATGEVIGRATSKWVMMNQDTRRLQKVSDDVREEYLV 219 (370)
Q Consensus 161 ~I~Twv~~~~r~~~~R~f~I~d~~~Gevla~a~s~wV~vD~~trRp~rip~e~~e~~~~ 219 (370)
+|+||++++++.++...|+|++ ++ +++++|.+++|++|.+++||+++|+++++.+..
T Consensus 77 ~v~~~v~~~~~~s~~~~~~i~~-~~-~l~a~~~~~~V~v~~~~~kp~~~P~~~~~~l~~ 133 (137)
T COG0824 77 TVRTRVEELGGKSLTLGYEIVN-ED-ELLATGETTLVCVDLKTGKPVPLPPELREALEA 133 (137)
T ss_pred EEEEEEEeecCeEEEEEEEEEe-CC-EEEEEEEEEEEEEECCCCCcccCCHHHHHHHHH
Confidence 9999999999999999999997 44 999999999999999999999999999998753
No 7
>TIGR00051 acyl-CoA thioester hydrolase, YbgC/YbaW family. This model describes a subset of related acyl-CoA thioesterases that include several at least partially characterized proteins. YbgC is an acyl-CoA thioesterase associated with the Tol-Pal system. YbaW is part of the FadM regulon.
Probab=99.93 E-value=9.4e-25 Score=181.19 Aligned_cols=117 Identities=15% Similarity=0.137 Sum_probs=109.5
Q ss_pred EEEeeecCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCCCCccchhhhhhcCeEEEeEeeeeeEccccCCCCEEEEEEEE
Q 017534 87 KFIVRCYEVGINKTATVETIANLLQEVGCNHAQSVGFSTDGFATTTTMRKLHLIWVTARMHIEIYKYPAWSDVVEIETWC 166 (370)
Q Consensus 87 ~~~Vr~~D~D~~Ghv~~~~yl~~~qea~~~~~~~lG~~~~~~~~~~~l~~~gl~wVv~r~~Iey~r~p~~gD~V~I~Twv 166 (370)
+++|+|+|||.+|||+++.|++|||+|+..|++.+|++.. ++.+.|++|++++++++|++|+.+||.|+|+||+
T Consensus 1 ~~~V~~~d~D~~G~v~~~~y~~~~~~a~~~~~~~~g~~~~------~~~~~~~~~~v~~~~i~y~~~~~~gd~v~v~~~~ 74 (117)
T TIGR00051 1 PVRVYYEDTDAQGIVYHANYLRYCERARTEFLRSLGFPQS------VLRAEGVAFVVVNINIEYKKPARLDDVLEIRTQI 74 (117)
T ss_pred CEEEEEeccCCCcEEEehHHHHHHHHHHHHHHHHcCCCHH------HHHhCCCEEEEEEEEEEECCcccCCCEEEEEEEE
Confidence 3689999999999999999999999999999999998764 4677899999999999999999999999999999
Q ss_pred EEeCCeEEEEEEEEEECCCCcEEEEEEEEEEEEeCCCCceecCC
Q 017534 167 QSEGRIGTRRDWILKDYATGEVIGRATSKWVMMNQDTRRLQKVS 210 (370)
Q Consensus 167 ~~~~r~~~~R~f~I~d~~~Gevla~a~s~wV~vD~~trRp~rip 210 (370)
.++++.++.+.|+|++ .+|++++.+.++||++|++++||+++|
T Consensus 75 ~~~~~~s~~~~~~i~~-~~~~~~~~~~~~~v~~d~~~~r~~~ip 117 (117)
T TIGR00051 75 EELNGFSFVFSQEIFN-EDEALLKAATVIVVCVDPKKQKPVAIP 117 (117)
T ss_pred EecCcEEEEEEEEEEe-CCCcEEEeeEEEEEEEECCCCeEcCCC
Confidence 9999999999999998 778888888888999999999999987
No 8
>PF13279 4HBT_2: Thioesterase-like superfamily; PDB: 2W3X_E 3CK1_A 2GF6_C 2NUJ_A 2HLJ_A 2XFL_B 2XEM_B 2OIW_B 2HX5_A 2FUJ_A ....
Probab=99.87 E-value=3.8e-21 Score=161.31 Aligned_cols=119 Identities=19% Similarity=0.247 Sum_probs=100.2
Q ss_pred eeecCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCCCCccchhhhhhcCeEEEeEeeeeeEccccCCCCEEEEEEEEEEe
Q 017534 90 VRCYEVGINKTATVETIANLLQEVGCNHAQSVGFSTDGFATTTTMRKLHLIWVTARMHIEIYKYPAWSDVVEIETWCQSE 169 (370)
Q Consensus 90 Vr~~D~D~~Ghv~~~~yl~~~qea~~~~~~~lG~~~~~~~~~~~l~~~gl~wVv~r~~Iey~r~p~~gD~V~I~Twv~~~ 169 (370)
|||+||| +|||||++|++||++|+.+++.+.|+ .+ .+...|+++++++.+|+|++|..+||.++|++++.+.
T Consensus 1 Vr~~D~D-~ghv~n~~Y~~~~e~ar~~~~~~~g~-~~------~~~~~~~~~~v~~~~i~y~~~~~~~d~~~v~~~~~~~ 72 (121)
T PF13279_consen 1 VRWSDTD-NGHVNNARYLRYFEEAREEFLEELGL-YD------ELQGQGIGFVVAESEIDYLRPLRFGDRLEVETRVEEI 72 (121)
T ss_dssp --GGGB--TSSB-HHHHHHHHHHHHHHHHHHHTS-CH------HHTTTTEEEEEEEEEEEE-S--BTTSEEEEEEEEEEE
T ss_pred CCHHHcc-CCeEcHHHHHHHHHHHHHHHHHhcch-hh------HHHhcCceEEEEEEEEEEcccccCCCEEEEEEEEEEE
Confidence 7999999 99999999999999999999999999 44 5778899999999999999999999999999999999
Q ss_pred CCeEEEEEEEEEECCCCcE--EEEEEEEEEEEeCCCCceecCCHHHHHHH
Q 017534 170 GRIGTRRDWILKDYATGEV--IGRATSKWVMMNQDTRRLQKVSDDVREEY 217 (370)
Q Consensus 170 ~r~~~~R~f~I~d~~~Gev--la~a~s~wV~vD~~trRp~rip~e~~e~~ 217 (370)
++.++...|.|++..+|+. +|+|.+++|++|.++ |++++|+++++.+
T Consensus 73 ~~~s~~~~~~i~~~~~g~~~~~a~~~~~~v~~d~~~-r~~~~P~~~~~~l 121 (121)
T PF13279_consen 73 GGKSFRFEQEIFRPADGKGELAATGRTVMVFVDYKT-RSVPIPDELREAL 121 (121)
T ss_dssp ESSEEEEEEEEEECSTTEEEEEEEEEEEEEEEETTT-CE-B--HHHHHHH
T ss_pred CCcEEEEEEEEEEcCCCceEEEEEEEEEEEEEeCCC-CcCCCCHHHHhcC
Confidence 9999999999997345655 999999999999999 7999999999864
No 9
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.87 E-value=1.7e-21 Score=201.62 Aligned_cols=129 Identities=15% Similarity=0.032 Sum_probs=120.4
Q ss_pred cEEEEEEeeecCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCCCCccchhhhhhcCeEEEeEeeeeeEccccCCCCEEEE
Q 017534 83 SYKEKFIVRCYEVGINKTATVETIANLLQEVGCNHAQSVGFSTDGFATTTTMRKLHLIWVTARMHIEIYKYPAWSDVVEI 162 (370)
Q Consensus 83 ~f~~~~~Vr~~D~D~~Ghv~~~~yl~~~qea~~~~~~~lG~~~~~~~~~~~l~~~gl~wVv~r~~Iey~r~p~~gD~V~I 162 (370)
.++.+++|+++|||.+|||||..|++||++|+.+++..+|++.+ ....+++|++++.+|+|++|+++||.|+|
T Consensus 345 ~~~~~~~V~~~~~D~~Ghvnn~~Yl~~~e~Ar~~~~~~~G~~~~-------~~~~~~~~vvv~~~i~y~rp~~~gD~v~I 417 (495)
T PRK07531 345 LRLVETKVPPAWVDYNGHMTEHRYLQVFGDTTDALLRLIGVDAA-------YVAAGHSYYTVETHIRHLGEAKAGQALHV 417 (495)
T ss_pred eEEEeEEECHHHcCCCCeEcHHHHHHHHHHHHHHHHHHcCCCHH-------HHhcCCcEEEEEEEEEEcccCCCCCEEEE
Confidence 34679999999999999999999999999999999999999864 23458999999999999999999999999
Q ss_pred EEEEEEeCCeEEEEEEEEEECCCCcEEEEEEEEEEEEeCCCCceecCCHHHHHHHhh
Q 017534 163 ETWCQSEGRIGTRRDWILKDYATGEVIGRATSKWVMMNQDTRRLQKVSDDVREEYLV 219 (370)
Q Consensus 163 ~Twv~~~~r~~~~R~f~I~d~~~Gevla~a~s~wV~vD~~trRp~rip~e~~e~~~~ 219 (370)
+||+.+.++.++.+.|+|++ .+|+++++|.++||++|++++||+++|+++++.+..
T Consensus 418 ~t~v~~~~~~s~~~~~~i~~-~~g~l~A~g~~~~v~vD~~trr~~~iP~e~r~~l~~ 473 (495)
T PRK07531 418 ETQLLSGDEKRLHLFHTLYD-AGGELIATAEHMLLHVDLKAGKAVPAPAAVLAALKP 473 (495)
T ss_pred EEEEEecCCcEEEEEEEEEC-CCCcEEEEEEEEEEEEECCCCccCCCCHHHHHHHHH
Confidence 99999999999999999998 889999999999999999999999999999988864
No 10
>cd00586 4HBT 4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites. There is no evidence to suggest that 4HBT is related to the type I thioesterases functioning in primary or secondary metabolic pathways. Each subunit of the 4HBT tetramer adopts a so-called hot-dog fold similar to those of beta-hydroxydecanoyl-ACP dehydratase, (R)-specific enoyl-CoA hydratase, and type II, thioesterase (TEII).
Probab=99.77 E-value=1.2e-17 Score=134.63 Aligned_cols=110 Identities=15% Similarity=0.187 Sum_probs=102.6
Q ss_pred EEEEEEeeecCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCCCCccchhhhhhcCeEEEeEeeeeeEccccCCCCEEEEE
Q 017534 84 YKEKFIVRCYEVGINKTATVETIANLLQEVGCNHAQSVGFSTDGFATTTTMRKLHLIWVTARMHIEIYKYPAWSDVVEIE 163 (370)
Q Consensus 84 f~~~~~Vr~~D~D~~Ghv~~~~yl~~~qea~~~~~~~lG~~~~~~~~~~~l~~~gl~wVv~r~~Iey~r~p~~gD~V~I~ 163 (370)
|..++.|+++|+|.+||+++..|++|+++++..++...|++.+ .+...+.+|++.+.+++|++|+.+||+|+|+
T Consensus 1 ~~~~~~v~~~d~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~i~~~~~~~~~~~i~v~ 74 (110)
T cd00586 1 FTLEIRVRFGDTDAAGHVNNARYLRYFEEAREEFLRELGLGYD------ELEEQGLGLVVVELEIDYLRPLRLGDRLTVE 74 (110)
T ss_pred CcEEEEEEEhhcCCCCEEchhHHHHHHHHHHHHHHHHcCCCHH------HHHhCCceEEEEEeEeeEcCccCCCCEEEEE
Confidence 4568899999999999999999999999999999999998765 3567899999999999999999999999999
Q ss_pred EEEEEeCCeEEEEEEEEEECCCCcEEEEEEEEEEEEe
Q 017534 164 TWCQSEGRIGTRRDWILKDYATGEVIGRATSKWVMMN 200 (370)
Q Consensus 164 Twv~~~~r~~~~R~f~I~d~~~Gevla~a~s~wV~vD 200 (370)
+|+.+.++.+..+.+.+++ .+|+++|+|.+.|+++|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~-~~g~~~a~~~~~~~~~d 110 (110)
T cd00586 75 TRVLRLGRKSFTFEQEIFR-EDGELLATAETVLVCVD 110 (110)
T ss_pred EEEEecCcEEEEEEEEEEC-CCCeEEEEEEEEEEEeC
Confidence 9999999999999999997 67999999999999987
No 11
>COG0824 FcbC Predicted thioesterase [General function prediction only]
Probab=99.67 E-value=5.7e-16 Score=134.31 Aligned_cols=96 Identities=19% Similarity=0.211 Sum_probs=82.2
Q ss_pred eeeeeeecccCcCCcccchhhHHHHHHHhCCc----------cccc---ccceEEEEEEeccccCCCCEEEEEEEeeccC
Q 017534 251 RLGLIPRRADLDMNQHVNNVTYIGWLLESMPQ----------DVID---THELQTITLDYRRECQQDDVVDSLTSAEPFE 317 (370)
Q Consensus 251 ~~~~~Vr~sDiD~ngHVNN~~Y~~w~~~~~~~----------~~~~---~~~l~~~~i~Y~~e~~~gd~v~v~t~v~~~~ 317 (370)
..+++|||+|+|++|||||++|+.|+++++.. +... ...+.+++|+|++|+++||.+.+.+++..+|
T Consensus 7 ~~~~~V~~~d~D~~GhV~~a~Yl~~fE~ar~~~l~~~g~~~~~~~~~~~~~~v~~~~i~y~~p~~~~d~l~v~~~v~~~~ 86 (137)
T COG0824 7 STPIRVRYEDTDAMGHVNNANYLVFFEEARTEFLRALGFDYADLEEGGIAFVVVEAEIDYLRPARLGDVLTVRTRVEELG 86 (137)
T ss_pred EEEEEEEhhhcCcccEEecchHHHHHHHHHHHHHHHcCCCHHHHhhCCcEEEEEEEEeEECCCccCCCEEEEEEEEEeec
Confidence 46799999999999999999999999999531 1111 2578999999999999999999999999987
Q ss_pred CCcccccccCCCCCCcccCCCCCceEEEEEEEECCCCcEEEEEEEEEEeccC
Q 017534 318 DAEPVSKLQGTNGSPAITGDKEDNHQFLHLLRLSGDGSEINRGRSVWRKKPA 369 (370)
Q Consensus 318 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~l~~~~dG~~ia~~~t~W~~~~~ 369 (370)
+ .++.|.|+|...+ ++++.|+++++|.+.
T Consensus 87 ~---------------------~s~~~~~~i~~~~--~l~a~~~~~~V~v~~ 115 (137)
T COG0824 87 G---------------------KSLTLGYEIVNED--ELLATGETTLVCVDL 115 (137)
T ss_pred C---------------------eEEEEEEEEEeCC--EEEEEEEEEEEEEEC
Confidence 5 5889999996543 999999999999763
No 12
>PRK10800 acyl-CoA thioesterase YbgC; Provisional
Probab=99.64 E-value=1e-15 Score=130.52 Aligned_cols=95 Identities=12% Similarity=0.196 Sum_probs=81.4
Q ss_pred eeeeeecccCcCCcccchhhHHHHHHHhCCcc----------c---ccccceEEEEEEeccccCCCCEEEEEEEeeccCC
Q 017534 252 LGLIPRRADLDMNQHVNNVTYIGWLLESMPQD----------V---IDTHELQTITLDYRRECQQDDVVDSLTSAEPFED 318 (370)
Q Consensus 252 ~~~~Vr~sDiD~ngHVNN~~Y~~w~~~~~~~~----------~---~~~~~l~~~~i~Y~~e~~~gd~v~v~t~v~~~~~ 318 (370)
.+++|||+|+|.+|||||+.|++|++++.... . ...+.+.+.+|+|++|+++||.|.+.+++..+|+
T Consensus 5 ~~~~Vr~~d~D~~Ghv~~~~y~~~~e~a~~~~~~~~g~~~~~~~~~~~~~~v~~~~i~y~~~~~~~d~i~v~t~v~~~~~ 84 (130)
T PRK10800 5 WPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALLAERVAFVVRKMTVEYYAPARLDDMLEVQSEITSMRG 84 (130)
T ss_pred EEEEEeehhcCCCCeEehHHHHHHHHHHHHHHHHHcCCCHHHHHhCCCEEEEEEEEEEEcCcccCCCEEEEEEEEEeeCc
Confidence 57899999999999999999999999984211 0 1245788999999999999999999999999875
Q ss_pred CcccccccCCCCCCcccCCCCCceEEEEEEEECCCCcEEEEEEEEEEecc
Q 017534 319 AEPVSKLQGTNGSPAITGDKEDNHQFLHLLRLSGDGSEINRGRSVWRKKP 368 (370)
Q Consensus 319 ~~~~~~~~~~~g~~~~~~~~~~~~~~~h~l~~~~dG~~ia~~~t~W~~~~ 368 (370)
.++.|.|.++ ..+|+++++|++.|++.+
T Consensus 85 ---------------------~s~~~~~~i~-~~~g~~~a~~~~~~v~~d 112 (130)
T PRK10800 85 ---------------------TSLTFTQRIV-NAEGTLLNEAEVLIVCVD 112 (130)
T ss_pred ---------------------EEEEEEEEEE-cCCCeEEEEEEEEEEEEE
Confidence 5788999985 458999999999999965
No 13
>TIGR00051 acyl-CoA thioester hydrolase, YbgC/YbaW family. This model describes a subset of related acyl-CoA thioesterases that include several at least partially characterized proteins. YbgC is an acyl-CoA thioesterase associated with the Tol-Pal system. YbaW is part of the FadM regulon.
Probab=99.59 E-value=1.2e-14 Score=120.40 Aligned_cols=93 Identities=16% Similarity=0.205 Sum_probs=76.3
Q ss_pred eeeecccCcCCcccchhhHHHHHHHhCC---------ccccc----ccceEEEEEEeccccCCCCEEEEEEEeeccCCCc
Q 017534 254 LIPRRADLDMNQHVNNVTYIGWLLESMP---------QDVID----THELQTITLDYRRECQQDDVVDSLTSAEPFEDAE 320 (370)
Q Consensus 254 ~~Vr~sDiD~ngHVNN~~Y~~w~~~~~~---------~~~~~----~~~l~~~~i~Y~~e~~~gd~v~v~t~v~~~~~~~ 320 (370)
++|||+|+|.||||||+.|+.|++++.. ...+. ...+.+++++|++|+++||.|.+.+++..+|+
T Consensus 2 ~~V~~~d~D~~G~v~~~~y~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~v~~~~i~y~~~~~~gd~v~v~~~~~~~~~-- 79 (117)
T TIGR00051 2 VRVYYEDTDAQGIVYHANYLRYCERARTEFLRSLGFPQSVLRAEGVAFVVVNINIEYKKPARLDDVLEIRTQIEELNG-- 79 (117)
T ss_pred EEEEEeccCCCcEEEehHHHHHHHHHHHHHHHHcCCCHHHHHhCCCEEEEEEEEEEECCcccCCCEEEEEEEEEecCc--
Confidence 6899999999999999999999999842 11111 24789999999999999999999999999864
Q ss_pred ccccccCCCCCCcccCCCCCceEEEEEEEECCCCcEEEEEEEEEEecc
Q 017534 321 PVSKLQGTNGSPAITGDKEDNHQFLHLLRLSGDGSEINRGRSVWRKKP 368 (370)
Q Consensus 321 ~~~~~~~~~g~~~~~~~~~~~~~~~h~l~~~~dG~~ia~~~t~W~~~~ 368 (370)
.++.+.|.++. ++|..++.+.+.|++.+
T Consensus 80 -------------------~s~~~~~~i~~-~~~~~~~~~~~~~v~~d 107 (117)
T TIGR00051 80 -------------------FSFVFSQEIFN-EDEALLKAATVIVVCVD 107 (117)
T ss_pred -------------------EEEEEEEEEEe-CCCcEEEeeEEEEEEEE
Confidence 57889999854 56777777777787654
No 14
>PF13279 4HBT_2: Thioesterase-like superfamily; PDB: 2W3X_E 3CK1_A 2GF6_C 2NUJ_A 2HLJ_A 2XFL_B 2XEM_B 2OIW_B 2HX5_A 2FUJ_A ....
Probab=99.57 E-value=1.2e-14 Score=121.74 Aligned_cols=92 Identities=25% Similarity=0.337 Sum_probs=70.4
Q ss_pred eecccCcCCcccchhhHHHHHHHhCCc--------cccc----ccceEEEEEEeccccCCCCEEEEEEEeeccCCCcccc
Q 017534 256 PRRADLDMNQHVNNVTYIGWLLESMPQ--------DVID----THELQTITLDYRRECQQDDVVDSLTSAEPFEDAEPVS 323 (370)
Q Consensus 256 Vr~sDiD~ngHVNN~~Y~~w~~~~~~~--------~~~~----~~~l~~~~i~Y~~e~~~gd~v~v~t~v~~~~~~~~~~ 323 (370)
|||+|+| +|||||++|+.|+++++.. +.+. ...+.+.+|+|++|+++||.+.+.+++..+|+
T Consensus 1 Vr~~D~D-~ghv~n~~Y~~~~e~ar~~~~~~~g~~~~~~~~~~~~~v~~~~i~y~~~~~~~d~~~v~~~~~~~~~----- 74 (121)
T PF13279_consen 1 VRWSDTD-NGHVNNARYLRYFEEAREEFLEELGLYDELQGQGIGFVVAESEIDYLRPLRFGDRLEVETRVEEIGG----- 74 (121)
T ss_dssp --GGGB--TSSB-HHHHHHHHHHHHHHHHHHHTSCHHHTTTTEEEEEEEEEEEE-S--BTTSEEEEEEEEEEEES-----
T ss_pred CCHHHcc-CCeEcHHHHHHHHHHHHHHHHHhcchhhHHHhcCceEEEEEEEEEEcccccCCCEEEEEEEEEEECC-----
Confidence 7999999 9999999999999998532 1111 35789999999999999999999999998874
Q ss_pred cccCCCCCCcccCCCCCceEEEEEEEECCCCcE--EEEEEEEEEeccC
Q 017534 324 KLQGTNGSPAITGDKEDNHQFLHLLRLSGDGSE--INRGRSVWRKKPA 369 (370)
Q Consensus 324 ~~~~~~g~~~~~~~~~~~~~~~h~l~~~~dG~~--ia~~~t~W~~~~~ 369 (370)
.++.+.|.+...++|.. +|+|.+++.+.+.
T Consensus 75 ----------------~s~~~~~~i~~~~~g~~~~~a~~~~~~v~~d~ 106 (121)
T PF13279_consen 75 ----------------KSFRFEQEIFRPADGKGELAATGRTVMVFVDY 106 (121)
T ss_dssp ----------------SEEEEEEEEEECSTTEEEEEEEEEEEEEEEET
T ss_pred ----------------cEEEEEEEEEEcCCCceEEEEEEEEEEEEEeC
Confidence 58899999977456655 9999999998653
No 15
>TIGR02799 thio_ybgC tol-pal system-associated acyl-CoA thioesterase. The tol-pal system consists of five critical genes. Inner membrane proteins TolQ and TolR convert protomotive force to energy that is transduced through TolA to an outer membrane complex of TolB and Pal. The system is known to be required to maintain outer membrane integrity. In a system with several homologous parts, ExbB and ExbD transduces energy through TonB to a variety of outer membrane proteins, many of which are siderophore receptors. The tol-pal system therefore may also be involved in transport. This family consists of a protein nearly always found in operons with the genes of the tol-pal system. The significance of this thioesterase to the tol-pal system is unclear, but either of two observations may be relevant. First, Pal, or peptidoglycan-associated lipoprotein, has a conserved N-terminal cleavage and acylation that makes it a lipoprotein. Second, the tol-pal system is implicated not only in the import o
Probab=99.57 E-value=2.1e-14 Score=121.01 Aligned_cols=94 Identities=14% Similarity=0.178 Sum_probs=79.2
Q ss_pred eeeeeecccCcCCcccchhhHHHHHHHhCC---------c-ccc----cccceEEEEEEeccccCCCCEEEEEEEeeccC
Q 017534 252 LGLIPRRADLDMNQHVNNVTYIGWLLESMP---------Q-DVI----DTHELQTITLDYRRECQQDDVVDSLTSAEPFE 317 (370)
Q Consensus 252 ~~~~Vr~sDiD~ngHVNN~~Y~~w~~~~~~---------~-~~~----~~~~l~~~~i~Y~~e~~~gd~v~v~t~v~~~~ 317 (370)
..++|||+|+|.+|||||+.|+.|++++.. . +.. ....+.+++|+|++|+++||.|.+.+++..+|
T Consensus 3 ~~~~vr~~d~D~~Ghv~~~~y~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~vv~~~~i~y~~~~~~gd~v~v~~~v~~~~ 82 (126)
T TIGR02799 3 WPIRVYYEDTDAGGVVYHANYLKFMERARTEWLRALGFEQSALLEETGLVFVVRSMELDYLKPARLDDLLTVTTRVVELK 82 (126)
T ss_pred ceEEEEEeccCCCceEEechHHHHHHHHHHHHHHHcCCCHHHHhhcCCcEEEEEEEEEEEcCcccCCCEEEEEEEEEecC
Confidence 468999999999999999999999987732 1 111 12478899999999999999999999999886
Q ss_pred CCcccccccCCCCCCcccCCCCCceEEEEEEEECCCCcEEEEEEEEEEecc
Q 017534 318 DAEPVSKLQGTNGSPAITGDKEDNHQFLHLLRLSGDGSEINRGRSVWRKKP 368 (370)
Q Consensus 318 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~l~~~~dG~~ia~~~t~W~~~~ 368 (370)
+ .++.+.|.+. .+|+++++|.+.|++.+
T Consensus 83 ~---------------------~~~~~~~~i~--~~g~~~a~~~~~~v~vd 110 (126)
T TIGR02799 83 G---------------------ASLVFAQEVR--RGDTLLCEATVEVACVD 110 (126)
T ss_pred c---------------------eEEEEEEEEE--eCCEEEEEEEEEEEEEE
Confidence 4 5788899986 47899999999999865
No 16
>cd03442 BFIT_BACH Brown fat-inducible thioesterase (BFIT). Brain acyl-CoA hydrolase (BACH). These enzymes deacylate long-chain fatty acids by hydrolyzing acyl-CoA thioesters to free fatty acids and CoA-SH. Eukaryotic members of this family are expressed in brain, testis, and brown adipose tissues. The archeal and eukaryotic members of this family have two tandem copies of the conserved hot dog fold, while most bacterial members have only one copy.
Probab=99.36 E-value=4.5e-11 Score=99.51 Aligned_cols=114 Identities=16% Similarity=0.111 Sum_probs=95.3
Q ss_pred CCccEEEEEEeeecCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCCCCccchhhhhhcCeEEEeEee-eeeEccccCCCC
Q 017534 80 DGLSYKEKFIVRCYEVGINKTATVETIANLLQEVGCNHAQSVGFSTDGFATTTTMRKLHLIWVTARM-HIEIYKYPAWSD 158 (370)
Q Consensus 80 ~~~~f~~~~~Vr~~D~D~~Ghv~~~~yl~~~qea~~~~~~~lG~~~~~~~~~~~l~~~gl~wVv~r~-~Iey~r~p~~gD 158 (370)
+.-.+...+.|++.++|+.|+++...|+.++++++..++.... .. .+++... +++|++|..+||
T Consensus 4 ~~~~~~~~~~v~~~~~d~~g~v~~g~~~~~~d~a~~~~~~~~~-------------~~--~~~~~~~~~~~f~~p~~~gd 68 (123)
T cd03442 4 EDTELSTRELVLPEDTNHHGTIFGGWLLEWMDELAGIAAYRHA-------------GG--RVVTASVDRIDFLKPVRVGD 68 (123)
T ss_pred CccceEEEEEeCCcccCcCCcEeHHHHHHHHHHHHHHHHHHHh-------------CC--cEEEEEECceEEcCccccCc
Confidence 3446788999999999999999999999999999877654321 11 2344445 799999999999
Q ss_pred EEEEEEEEEEeCCeEEEEEEEEEECCC-----CcEEEEEEEEEEEEeCCCCceecCC
Q 017534 159 VVEIETWCQSEGRIGTRRDWILKDYAT-----GEVIGRATSKWVMMNQDTRRLQKVS 210 (370)
Q Consensus 159 ~V~I~Twv~~~~r~~~~R~f~I~d~~~-----Gevla~a~s~wV~vD~~trRp~rip 210 (370)
.|.+++++.+.++.++..++++++ .+ ++++++|..++|++|. ++||+++|
T Consensus 69 ~l~i~~~v~~~g~~~~~~~~~i~~-~~~~~~~~~~~a~~~~~~v~~~~-~~~~~~~p 123 (123)
T cd03442 69 VVELSARVVYTGRTSMEVGVEVEA-EDPLTGERRLVTSAYFTFVALDE-DGKPRPVP 123 (123)
T ss_pred EEEEEEEEEEecCCeEEEEEEEEE-ecCCCCcEEEEEEEEEEEEEECC-CCCeeeCC
Confidence 999999999999999999999997 43 4799999999999994 58999887
No 17
>cd00586 4HBT 4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites. There is no evidence to suggest that 4HBT is related to the type I thioesterases functioning in primary or secondary metabolic pathways. Each subunit of the 4HBT tetramer adopts a so-called hot-dog fold similar to those of beta-hydroxydecanoyl-ACP dehydratase, (R)-specific enoyl-CoA hydratase, and type II, thioesterase (TEII).
Probab=99.36 E-value=7.3e-12 Score=100.57 Aligned_cols=94 Identities=20% Similarity=0.211 Sum_probs=77.2
Q ss_pred eeeeeecccCcCCcccchhhHHHHHHHhCCccc-------------ccccceEEEEEEeccccCCCCEEEEEEEeeccCC
Q 017534 252 LGLIPRRADLDMNQHVNNVTYIGWLLESMPQDV-------------IDTHELQTITLDYRRECQQDDVVDSLTSAEPFED 318 (370)
Q Consensus 252 ~~~~Vr~sDiD~ngHVNN~~Y~~w~~~~~~~~~-------------~~~~~l~~~~i~Y~~e~~~gd~v~v~t~v~~~~~ 318 (370)
..+.|+++|+|.+|||||..|++|+++++...+ ...+.+.+.+++|++|++.||+|.+.+++...++
T Consensus 3 ~~~~v~~~d~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~v~~~~~~~~~ 82 (110)
T cd00586 3 LEIRVRFGDTDAAGHVNNARYLRYFEEAREEFLRELGLGYDELEEQGLGLVVVELEIDYLRPLRLGDRLTVETRVLRLGR 82 (110)
T ss_pred EEEEEEEhhcCCCCEEchhHHHHHHHHHHHHHHHHcCCCHHHHHhCCceEEEEEeEeeEcCccCCCCEEEEEEEEEecCc
Confidence 467899999999999999999999999964211 1245788999999999999999999999988653
Q ss_pred CcccccccCCCCCCcccCCCCCceEEEEEEEECCCCcEEEEEEEEEEec
Q 017534 319 AEPVSKLQGTNGSPAITGDKEDNHQFLHLLRLSGDGSEINRGRSVWRKK 367 (370)
Q Consensus 319 ~~~~~~~~~~~g~~~~~~~~~~~~~~~h~l~~~~dG~~ia~~~t~W~~~ 367 (370)
.+..+.+.+. .++|+++++|.+.|...
T Consensus 83 ---------------------~~~~~~~~~~-~~~g~~~a~~~~~~~~~ 109 (110)
T cd00586 83 ---------------------KSFTFEQEIF-REDGELLATAETVLVCV 109 (110)
T ss_pred ---------------------EEEEEEEEEE-CCCCeEEEEEEEEEEEe
Confidence 3456666664 34799999999999874
No 18
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.29 E-value=1.9e-11 Score=126.93 Aligned_cols=96 Identities=11% Similarity=0.091 Sum_probs=82.1
Q ss_pred eeeeeeecccCcCCcccchhhHHHHHHHhCCc---------ccc---cccceEEEEEEeccccCCCCEEEEEEEeeccCC
Q 017534 251 RLGLIPRRADLDMNQHVNNVTYIGWLLESMPQ---------DVI---DTHELQTITLDYRRECQQDDVVDSLTSAEPFED 318 (370)
Q Consensus 251 ~~~~~Vr~sDiD~ngHVNN~~Y~~w~~~~~~~---------~~~---~~~~l~~~~i~Y~~e~~~gd~v~v~t~v~~~~~ 318 (370)
..+++|++.|+|.||||||++|+.|++++... +.+ ..+.+.+++|+|++|+++||.|.|.+++..+|+
T Consensus 347 ~~~~~V~~~~~D~~Ghvnn~~Yl~~~e~Ar~~~~~~~G~~~~~~~~~~~~vvv~~~i~y~rp~~~gD~v~I~t~v~~~~~ 426 (495)
T PRK07531 347 LVETKVPPAWVDYNGHMTEHRYLQVFGDTTDALLRLIGVDAAYVAAGHSYYTVETHIRHLGEAKAGQALHVETQLLSGDE 426 (495)
T ss_pred EEeEEECHHHcCCCCeEcHHHHHHHHHHHHHHHHHHcCCCHHHHhcCCcEEEEEEEEEEcccCCCCCEEEEEEEEEecCC
Confidence 45789999999999999999999999988421 111 145789999999999999999999999999875
Q ss_pred CcccccccCCCCCCcccCCCCCceEEEEEEEECCCCcEEEEEEEEEEecc
Q 017534 319 AEPVSKLQGTNGSPAITGDKEDNHQFLHLLRLSGDGSEINRGRSVWRKKP 368 (370)
Q Consensus 319 ~~~~~~~~~~~g~~~~~~~~~~~~~~~h~l~~~~dG~~ia~~~t~W~~~~ 368 (370)
.++.+.|.+. .++|++++.|+++|++.+
T Consensus 427 ---------------------~s~~~~~~i~-~~~g~l~A~g~~~~v~vD 454 (495)
T PRK07531 427 ---------------------KRLHLFHTLY-DAGGELIATAEHMLLHVD 454 (495)
T ss_pred ---------------------cEEEEEEEEE-CCCCcEEEEEEEEEEEEE
Confidence 5789999996 468999999999999965
No 19
>cd03440 hot_dog The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated proteins also share the hotdog fold. These proteins have related, but distinct, catalytic activities that include metabolic roles such as thioester hydrolysis in fatty acid metabolism, and degradation of phenylacetic acid and the environmental pollutant 4-chlorobenzoate. This superfamily also includes the PaaI-like protein FapR, a non-catalytic bacterial homolog involved in transcriptional regulation of fatty acid biosynthesis.
Probab=98.99 E-value=1.8e-08 Score=75.91 Aligned_cols=97 Identities=15% Similarity=0.146 Sum_probs=87.1
Q ss_pred EEEEeeecCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCCCCccchhhhhhcCeEEEeEeeeeeEccccCCCCEEEEEEE
Q 017534 86 EKFIVRCYEVGINKTATVETIANLLQEVGCNHAQSVGFSTDGFATTTTMRKLHLIWVTARMHIEIYKYPAWSDVVEIETW 165 (370)
Q Consensus 86 ~~~~Vr~~D~D~~Ghv~~~~yl~~~qea~~~~~~~lG~~~~~~~~~~~l~~~gl~wVv~r~~Iey~r~p~~gD~V~I~Tw 165 (370)
..+.|+++|+|.+++++...++.+++.++..++...+. .+..+++.+++++|++|+..||.|.++++
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~g~~v~~~~~ 69 (100)
T cd03440 3 LRLTVTPEDIDGGGIVHGGLLLALADEAAGAAAARLGG-------------RGLGAVTLSLDVRFLRPVRPGDTLTVEAE 69 (100)
T ss_pred EEEEeCHHHcCcCCccchHHHHHHHHHHHHHHHHHhcc-------------CCCeEEEEEEEeEEecCCCCCCEEEEEEE
Confidence 47899999999999999999999999999999877553 35679999999999999999999999999
Q ss_pred EEEeCCeEEEEEEEEEECCCCcEEEEEEEEE
Q 017534 166 CQSEGRIGTRRDWILKDYATGEVIGRATSKW 196 (370)
Q Consensus 166 v~~~~r~~~~R~f~I~d~~~Gevla~a~s~w 196 (370)
+.+.++........+.+ .+|++++.+..++
T Consensus 70 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 99 (100)
T cd03440 70 VVRVGRSSVTVEVEVRN-EDGKLVATATATF 99 (100)
T ss_pred EEeccccEEEEEEEEEC-CCCCEEEEEEEEe
Confidence 99999888888888887 6799999997765
No 20
>PF03061 4HBT: Thioesterase superfamily; InterPro: IPR006683 This family contains a wide variety of enzymes, principally thioesterases. This family includes 4HBT (3.1.2.23 from EC) which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3. This family includes various cytosolic long-chain acyl-CoA thioester hydrolases. Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate, they also catalyse the hydrolysis of other long chain fatty acyl-CoA thioesters. ; PDB: 3F5O_F 2F0X_D 2H4U_C 2PRX_A 2OV9_D 1YLI_B 3BJK_F 1IXL_A 3DKZ_B 2EIS_B ....
Probab=98.94 E-value=1.9e-08 Score=77.15 Aligned_cols=79 Identities=16% Similarity=0.120 Sum_probs=72.1
Q ss_pred CCCcCHHHHHHHHHHHHHHHHHHcCCCCCCccchhhhhhcCeEEEeEeeeeeEccccCCCCEEEEEEEEEEeCCeEEEEE
Q 017534 98 NKTATVETIANLLQEVGCNHAQSVGFSTDGFATTTTMRKLHLIWVTARMHIEIYKYPAWSDVVEIETWCQSEGRIGTRRD 177 (370)
Q Consensus 98 ~Ghv~~~~yl~~~qea~~~~~~~lG~~~~~~~~~~~l~~~gl~wVv~r~~Iey~r~p~~gD~V~I~Twv~~~~r~~~~R~ 177 (370)
+|+|+.+.|+.|+++|+..++...+.+ +...++...+++|++|...||.|++++|+.+.++.++..+
T Consensus 1 ~G~v~~g~~~~~~d~a~~~~~~~~~~~-------------~~~~~~~~~~i~f~~p~~~gd~l~~~~~v~~~g~~~~~~~ 67 (79)
T PF03061_consen 1 NGIVHGGVYLSLFDEAASAALRSHGGD-------------GRGVVTVELSIDFLRPVRPGDTLRVEARVVRVGRKSFTVE 67 (79)
T ss_dssp TSSBCHHHHHHHHHHHHHHHHHHHHSS-------------TEEEEEEEEEEEESS-BBTTSEEEEEEEEEEEESSEEEEE
T ss_pred CCEEhHHHHHHHHHHHHHHHHHHhccC-------------CcceEEEEEEEEEccccCCCeEEEEEEEEEEECCEEEEEE
Confidence 699999999999999999999887753 4689999999999999999999999999999999999999
Q ss_pred EEEEECCCCcEEE
Q 017534 178 WILKDYATGEVIG 190 (370)
Q Consensus 178 f~I~d~~~Gevla 190 (370)
+++++ +++++||
T Consensus 68 ~~v~~-~~~~~~~ 79 (79)
T PF03061_consen 68 VEVYS-EDGRLCA 79 (79)
T ss_dssp EEEEE-TTSCEEE
T ss_pred EEEEE-CCCcEEC
Confidence 99999 8888875
No 21
>cd03443 PaaI_thioesterase PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).
Probab=98.71 E-value=5.7e-07 Score=73.65 Aligned_cols=100 Identities=15% Similarity=0.073 Sum_probs=87.5
Q ss_pred cEEEEEEeeecCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCCCCccchhhhhhcCeEEEeEeeeeeEccccCCCCEEEE
Q 017534 83 SYKEKFIVRCYEVGINKTATVETIANLLQEVGCNHAQSVGFSTDGFATTTTMRKLHLIWVTARMHIEIYKYPAWSDVVEI 162 (370)
Q Consensus 83 ~f~~~~~Vr~~D~D~~Ghv~~~~yl~~~qea~~~~~~~lG~~~~~~~~~~~l~~~gl~wVv~r~~Iey~r~p~~gD~V~I 162 (370)
.....+.+...++|..|.++...++.+++.+....+....- .+...++.+++++|.+|+.. +.|.+
T Consensus 13 ~~~~~~~~~~~~~n~~g~vhgg~l~~l~d~a~~~~~~~~~~-------------~~~~~~~~~~~i~f~~p~~~-~~v~~ 78 (113)
T cd03443 13 RVVLRLPVRPRHLNPGGIVHGGAIATLADTAGGLAALSALP-------------PGALAVTVDLNVNYLRPARG-GDLTA 78 (113)
T ss_pred eEEEEeeCcHhhcCCCCeEeHHHHHHHHHHHHHHHHhhccC-------------CCCceEEEEEEEeEEcCCCC-CeEEE
Confidence 45667899999999999999999999999999987765421 23567899999999999999 99999
Q ss_pred EEEEEEeCCeEEEEEEEEEECCCCcEEEEEEEEEE
Q 017534 163 ETWCQSEGRIGTRRDWILKDYATGEVIGRATSKWV 197 (370)
Q Consensus 163 ~Twv~~~~r~~~~R~f~I~d~~~Gevla~a~s~wV 197 (370)
++++.+.++.....+..+++ ++|+++++|..+|+
T Consensus 79 ~~~v~~~g~~~~~~~~~~~~-~~~~~~a~a~~~~~ 112 (113)
T cd03443 79 RARVVKLGRRLAVVEVEVTD-EDGKLVATARGTFA 112 (113)
T ss_pred EEEEEecCceEEEEEEEEEC-CCCCEEEEEEEEEe
Confidence 99999999988888899997 67999999999886
No 22
>PF01643 Acyl-ACP_TE: Acyl-ACP thioesterase; InterPro: IPR002864 This entry represents various acyl-acyl carrier protein (ACP) thioesterases (TE) which terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid []. These proteins contain a duplication of two 4HBT-like domains.; GO: 0016790 thiolester hydrolase activity, 0006633 fatty acid biosynthetic process; PDB: 2ESS_A 2OWN_A.
Probab=98.71 E-value=7.3e-08 Score=92.15 Aligned_cols=98 Identities=14% Similarity=0.232 Sum_probs=68.1
Q ss_pred CCCccEEEEEEeeecCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCCCCccchhhhhhcCeEEEeEeeeeeEccccCCCC
Q 017534 79 EDGLSYKEKFIVRCYEVGINKTATVETIANLLQEVGCNHAQSVGFSTDGFATTTTMRKLHLIWVTARMHIEIYKYPAWSD 158 (370)
Q Consensus 79 ~~~~~f~~~~~Vr~~D~D~~Ghv~~~~yl~~~qea~~~~~~~lG~~~~~~~~~~~l~~~gl~wVv~r~~Iey~r~p~~gD 158 (370)
.....+...++||++|+|.||||||+.|++|+.|+--..+ .+ ...+.++.|.|.++..+||
T Consensus 161 ~~~~~~~~~~~vr~sDiD~N~HVNN~~Yl~w~~d~lp~~~----------------~~---~~~~~~i~I~y~~E~~~gd 221 (261)
T PF01643_consen 161 PEEPEFEKEFTVRYSDIDMNGHVNNARYLDWALDALPEEF----------------LE---KYQIKSIDINYKKEIRYGD 221 (261)
T ss_dssp --TTSECEEEE--GGGEETTTCE-HHHHHHHHHCCS-HHH----------------HC---CEEEEEEEEEE-S--BTT-
T ss_pred ChhhheeecccccHHHCCCCCCcCHHHHHHHHHHhCcchh----------------hc---cCCcEEEEEEEccccCCCC
Confidence 3445678899999999999999999999999988643321 11 2468899999999999999
Q ss_pred EEEEEEEEEEeC-CeEEEEEEEEEECCCCcEEEEEEEEE
Q 017534 159 VVEIETWCQSEG-RIGTRRDWILKDYATGEVIGRATSKW 196 (370)
Q Consensus 159 ~V~I~Twv~~~~-r~~~~R~f~I~d~~~Gevla~a~s~w 196 (370)
.|.+.+.+.... .-.......|.+ .+|+++|+|.+.|
T Consensus 222 ~i~~~~~~~~~~~~~~~~~~h~i~~-~~g~~~~~~~~~W 259 (261)
T PF01643_consen 222 TITSYTEVEKDEEEDGLSTLHEIRN-EDGEEVARARTEW 259 (261)
T ss_dssp EEEEEEEEEEECCTTEEEEEEEEEC-T-TCEEEEEEEEE
T ss_pred EEEEEEEEcccccCCceEEEEEEEc-CCCceEEEEEEEE
Confidence 999999876433 222233457887 6699999999999
No 23
>cd03442 BFIT_BACH Brown fat-inducible thioesterase (BFIT). Brain acyl-CoA hydrolase (BACH). These enzymes deacylate long-chain fatty acids by hydrolyzing acyl-CoA thioesters to free fatty acids and CoA-SH. Eukaryotic members of this family are expressed in brain, testis, and brown adipose tissues. The archeal and eukaryotic members of this family have two tandem copies of the conserved hot dog fold, while most bacterial members have only one copy.
Probab=98.69 E-value=1.8e-07 Score=77.71 Aligned_cols=97 Identities=7% Similarity=0.021 Sum_probs=76.7
Q ss_pred eeeeeeecccCcCCcccchhhHHHHHHHhCCcccc---c-ccceEEE-EEEeccccCCCCEEEEEEEeeccCCCcccccc
Q 017534 251 RLGLIPRRADLDMNQHVNNVTYIGWLLESMPQDVI---D-THELQTI-TLDYRRECQQDDVVDSLTSAEPFEDAEPVSKL 325 (370)
Q Consensus 251 ~~~~~Vr~sDiD~ngHVNN~~Y~~w~~~~~~~~~~---~-~~~l~~~-~i~Y~~e~~~gd~v~v~t~v~~~~~~~~~~~~ 325 (370)
...+.|++.|+|..||||+..|+.|++++...-.. . ......+ +++|++|+.+||.|.+.+++...|+
T Consensus 9 ~~~~~v~~~~~d~~g~v~~g~~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~f~~p~~~gd~l~i~~~v~~~g~------- 81 (123)
T cd03442 9 STRELVLPEDTNHHGTIFGGWLLEWMDELAGIAAYRHAGGRVVTASVDRIDFLKPVRVGDVVELSARVVYTGR------- 81 (123)
T ss_pred EEEEEeCCcccCcCCcEeHHHHHHHHHHHHHHHHHHHhCCcEEEEEECceEEcCccccCcEEEEEEEEEEecC-------
Confidence 46789999999999999999999999988532111 1 1234566 7999999999999999999998875
Q ss_pred cCCCCCCcccCCCCCceEEEEEEEECC----CCcEEEEEEEEEEecc
Q 017534 326 QGTNGSPAITGDKEDNHQFLHLLRLSG----DGSEINRGRSVWRKKP 368 (370)
Q Consensus 326 ~~~~g~~~~~~~~~~~~~~~h~l~~~~----dG~~ia~~~t~W~~~~ 368 (370)
.++.+...+...+ +++.+++|..++++.+
T Consensus 82 --------------~~~~~~~~i~~~~~~~~~~~~~a~~~~~~v~~~ 114 (123)
T cd03442 82 --------------TSMEVGVEVEAEDPLTGERRLVTSAYFTFVALD 114 (123)
T ss_pred --------------CeEEEEEEEEEecCCCCcEEEEEEEEEEEEEEC
Confidence 4677777776543 3578999999998853
No 24
>cd03440 hot_dog The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated proteins also share the hotdog fold. These proteins have related, but distinct, catalytic activities that include metabolic roles such as thioester hydrolysis in fatty acid metabolism, and degradation of phenylacetic acid and the environmental pollutant 4-chlorobenzoate. This superfamily also includes the PaaI-like protein FapR, a non-catalytic bacterial homolog involved in transcriptional regulation of fatty acid biosynthesis.
Probab=98.64 E-value=3.5e-07 Score=68.72 Aligned_cols=90 Identities=11% Similarity=0.086 Sum_probs=73.0
Q ss_pred eeeeecccCcCCcccchhhHHHHHHHhCCcccc------cccceEEEEEEeccccCCCCEEEEEEEeeccCCCccccccc
Q 017534 253 GLIPRRADLDMNQHVNNVTYIGWLLESMPQDVI------DTHELQTITLDYRRECQQDDVVDSLTSAEPFEDAEPVSKLQ 326 (370)
Q Consensus 253 ~~~Vr~sDiD~ngHVNN~~Y~~w~~~~~~~~~~------~~~~l~~~~i~Y~~e~~~gd~v~v~t~v~~~~~~~~~~~~~ 326 (370)
.+.+++.|+|.++|+|+..|+.|++++....+. ....+..++++|++|+++||.+.+.+++...+.
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~-------- 75 (100)
T cd03440 4 RLTVTPEDIDGGGIVHGGLLLALADEAAGAAAARLGGRGLGAVTLSLDVRFLRPVRPGDTLTVEAEVVRVGR-------- 75 (100)
T ss_pred EEEeCHHHcCcCCccchHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeEEecCCCCCCEEEEEEEEEeccc--------
Confidence 578999999999999999999999988654332 245788999999999999999999999988653
Q ss_pred CCCCCCcccCCCCCceEEEEEEEECCCCcEEEEEEEEE
Q 017534 327 GTNGSPAITGDKEDNHQFLHLLRLSGDGSEINRGRSVW 364 (370)
Q Consensus 327 ~~~g~~~~~~~~~~~~~~~h~l~~~~dG~~ia~~~t~W 364 (370)
....+.+.+. ..+|.+++.+...|
T Consensus 76 -------------~~~~~~~~~~-~~~~~~~~~~~~~~ 99 (100)
T cd03440 76 -------------SSVTVEVEVR-NEDGKLVATATATF 99 (100)
T ss_pred -------------cEEEEEEEEE-CCCCCEEEEEEEEe
Confidence 3456666663 34699999998765
No 25
>PF03061 4HBT: Thioesterase superfamily; InterPro: IPR006683 This family contains a wide variety of enzymes, principally thioesterases. This family includes 4HBT (3.1.2.23 from EC) which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3. This family includes various cytosolic long-chain acyl-CoA thioester hydrolases. Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate, they also catalyse the hydrolysis of other long chain fatty acyl-CoA thioesters. ; PDB: 3F5O_F 2F0X_D 2H4U_C 2PRX_A 2OV9_D 1YLI_B 3BJK_F 1IXL_A 3DKZ_B 2EIS_B ....
Probab=98.46 E-value=6.4e-07 Score=68.55 Aligned_cols=73 Identities=14% Similarity=0.117 Sum_probs=58.4
Q ss_pred CcccchhhHHHHHHHhCCccc---c---cccceEEEEEEeccccCCCCEEEEEEEeeccCCCcccccccCCCCCCcccCC
Q 017534 264 NQHVNNVTYIGWLLESMPQDV---I---DTHELQTITLDYRRECQQDDVVDSLTSAEPFEDAEPVSKLQGTNGSPAITGD 337 (370)
Q Consensus 264 ngHVNN~~Y~~w~~~~~~~~~---~---~~~~l~~~~i~Y~~e~~~gd~v~v~t~v~~~~~~~~~~~~~~~~g~~~~~~~ 337 (370)
||||||..|+.|++++...-+ . ....+.+++|+|++|++.||.+.+.+++.++|+
T Consensus 1 ~G~v~~g~~~~~~d~a~~~~~~~~~~~~~~~~~~~~~i~f~~p~~~gd~l~~~~~v~~~g~------------------- 61 (79)
T PF03061_consen 1 NGIVHGGVYLSLFDEAASAALRSHGGDGRGVVTVELSIDFLRPVRPGDTLRVEARVVRVGR------------------- 61 (79)
T ss_dssp TSSBCHHHHHHHHHHHHHHHHHHHHSSTEEEEEEEEEEEESS-BBTTSEEEEEEEEEEEES-------------------
T ss_pred CCEEhHHHHHHHHHHHHHHHHHHhccCCcceEEEEEEEEEccccCCCeEEEEEEEEEEECC-------------------
Confidence 799999999999999853211 1 235678999999999999999999999999875
Q ss_pred CCCceEEEEEEEECCCCcEEE
Q 017534 338 KEDNHQFLHLLRLSGDGSEIN 358 (370)
Q Consensus 338 ~~~~~~~~h~l~~~~dG~~ia 358 (370)
.++.+.++++ ++++.++|
T Consensus 62 --~~~~~~~~v~-~~~~~~~~ 79 (79)
T PF03061_consen 62 --KSFTVEVEVY-SEDGRLCA 79 (79)
T ss_dssp --SEEEEEEEEE-ETTSCEEE
T ss_pred --EEEEEEEEEE-ECCCcEEC
Confidence 5778889995 46667664
No 26
>PLN02370 acyl-ACP thioesterase
Probab=98.44 E-value=2.3e-06 Score=86.95 Aligned_cols=136 Identities=18% Similarity=0.221 Sum_probs=100.7
Q ss_pred cEEEEEEEEEEEEeCCCCceecCCHHHHHHHhhcCcccccccCCccCccccccCCCCCCcccceeeeeeeecccCcCCcc
Q 017534 187 EVIGRATSKWVMMNQDTRRLQKVSDDVREEYLVFCPRELRLAFPEENSSSSRKISKLEDPAQYSRLGLIPRRADLDMNQH 266 (370)
Q Consensus 187 evla~a~s~wV~vD~~trRp~rip~e~~e~~~~~~~~~~~l~~p~e~~~~~~ki~~~~~~~~~~~~~~~Vr~sDiD~ngH 266 (370)
++...|.-+|.++|-+.+||-.+-| .|+ +.+|. ++...+ +..++||++|+|.+|+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~------------------~~~~~--~~~~~y-~~~f~Ir~yEvD~~g~ 156 (419)
T PLN02370 102 TIFLAAEKQWMMLDWKPRRSDMLID----PFG------------------IGRIV--QDGLVF-RQNFSIRSYEIGADRT 156 (419)
T ss_pred HHHHhhhhhhhhhcccCCCCccccc----ccc------------------cCcee--ccCcEE-EEEEEEeeEEECCCCC
Confidence 3444566789999987776665543 222 12221 111122 4679999999999999
Q ss_pred cchhhHHHHHHHhCCcc---------------cc----cccceEEEEEEeccccCCCCEEEEEEEeeccCCCcccccccC
Q 017534 267 VNNVTYIGWLLESMPQD---------------VI----DTHELQTITLDYRRECQQDDVVDSLTSAEPFEDAEPVSKLQG 327 (370)
Q Consensus 267 VNN~~Y~~w~~~~~~~~---------------~~----~~~~l~~~~i~Y~~e~~~gd~v~v~t~v~~~~~~~~~~~~~~ 327 (370)
+-=...++|++|+...+ .+ ..+++.+++|+|.++.++||+|.|.||+..+|+
T Consensus 157 lsl~~L~n~lQd~A~~Hs~~lGll~~Gfg~~~~m~~~gl~WVLtr~~I~~~R~P~~gD~V~V~Twv~~~~k--------- 227 (419)
T PLN02370 157 ASIETLMNHLQETALNHVKTAGLLGDGFGSTPEMSKRNLIWVVTRMQVLVDRYPTWGDVVQVDTWVSASGK--------- 227 (419)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCccccccccHHHHHhCCceEEEEEEEEEeCcCCCCCCEEEEEEEEeeCCC---------
Confidence 99999999999984221 11 147899999999999999999999999998754
Q ss_pred CCCCCcccCCCCCceEEEEEEEECCCCcEEEEEEEEEEecc
Q 017534 328 TNGSPAITGDKEDNHQFLHLLRLSGDGSEINRGRSVWRKKP 368 (370)
Q Consensus 328 ~~g~~~~~~~~~~~~~~~h~l~~~~dG~~ia~~~t~W~~~~ 368 (370)
.++.+.+.|+..++|+++++|.|+|++.+
T Consensus 228 ------------~~~~Rdf~I~D~~~Ge~la~A~SvWV~mD 256 (419)
T PLN02370 228 ------------NGMRRDWLVRDCKTGETLTRASSVWVMMN 256 (419)
T ss_pred ------------CEEEEEEEEEECCCCeEEEEEEEEEEEEE
Confidence 35566777866668999999999999854
No 27
>PRK10694 acyl-CoA esterase; Provisional
Probab=98.29 E-value=3.7e-05 Score=66.49 Aligned_cols=112 Identities=14% Similarity=0.067 Sum_probs=89.7
Q ss_pred EEEEEEeeecCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCCCCccchhhhhhcCeEEEeEee-eeeEccccCCCCEEEE
Q 017534 84 YKEKFIVRCYEVGINKTATVETIANLLQEVGCNHAQSVGFSTDGFATTTTMRKLHLIWVTARM-HIEIYKYPAWSDVVEI 162 (370)
Q Consensus 84 f~~~~~Vr~~D~D~~Ghv~~~~yl~~~qea~~~~~~~lG~~~~~~~~~~~l~~~gl~wVv~r~-~Iey~r~p~~gD~V~I 162 (370)
....+.|...|++..|.+.=..++.|+.+++.-.+.... +-.++++++ .++|.+|...||.|++
T Consensus 12 ~~~~~~v~p~~~N~~g~lfGG~ll~~~D~~a~i~a~~~~---------------~~~~vtv~vd~i~F~~Pv~~Gd~l~~ 76 (133)
T PRK10694 12 LVLRTLAMPADTNANGDIFGGWLMSQMDIGGAILAKEIA---------------HGRVVTVRVEGMTFLRPVAVGDVVCC 76 (133)
T ss_pred eEEEEEcChhhcCCCCcEeHHHHHHHHHHHHHHHHHHHc---------------CCceEEEEECceEECCCcccCcEEEE
Confidence 344568999999999999999999999998877664422 124688888 6799999999999999
Q ss_pred EEEEEEeCCeEEEEEEEEEEC---C--CC--cEEEEEEEEEEEEeCCCCceecCCH
Q 017534 163 ETWCQSEGRIGTRRDWILKDY---A--TG--EVIGRATSKWVMMNQDTRRLQKVSD 211 (370)
Q Consensus 163 ~Twv~~~~r~~~~R~f~I~d~---~--~G--evla~a~s~wV~vD~~trRp~rip~ 211 (370)
+.++...++.++..+.+++.. . .| ..++.+..++|.+|- .+||.++|+
T Consensus 77 ~a~V~~~g~sS~~v~v~v~~~~~~~~~~g~~~~~~~~~~tfVavd~-~g~p~~vp~ 131 (133)
T PRK10694 77 YARCVKTGTTSISINIEVWVKKVASEPIGQRYKATEALFTYVAVDP-EGKPRALPV 131 (133)
T ss_pred EEEEEEccCceEEEEEEEEEeecccCCCCcEEEEEEEEEEEEEECC-CCCEEeCCC
Confidence 999999999999877777631 1 12 346788888999986 579999875
No 28
>PLN02647 acyl-CoA thioesterase
Probab=98.22 E-value=0.0004 Score=71.15 Aligned_cols=221 Identities=14% Similarity=0.039 Sum_probs=142.1
Q ss_pred EeeecCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCCCCccchhhhhhcCeEEEeEeee-eeEccccCCCCEEEEEEEEE
Q 017534 89 IVRCYEVGINKTATVETIANLLQEVGCNHAQSVGFSTDGFATTTTMRKLHLIWVTARMH-IEIYKYPAWSDVVEIETWCQ 167 (370)
Q Consensus 89 ~Vr~~D~D~~Ghv~~~~yl~~~qea~~~~~~~lG~~~~~~~~~~~l~~~gl~wVv~r~~-Iey~r~p~~gD~V~I~Twv~ 167 (370)
.++..+++..|.+.-..++.+|.+++..-+....-..+. ....+..|.+... |+|++|+..||.|.|...+.
T Consensus 99 ~l~~~y~N~~G~l~gG~LLe~mD~~A~~~A~rh~~~~~~-------~~~p~~vVTAsVD~i~F~~Pi~~g~~v~l~g~Vt 171 (437)
T PLN02647 99 ILREQYRNPWNEVRIGKLLEDLDALAGTISVKHCSDDDS-------TTRPLLLVTASVDKIVLKKPIRVDVDLKIVGAVT 171 (437)
T ss_pred hhchhhcCCCCcEeHhHHHHHHHHHHHHHHHHHhCCCcc-------cCCcceEEEEEECcEEEcCCCcCCcEEEEEEEEE
Confidence 566777999999999999999999888776554332111 1233456666654 89999999999999999999
Q ss_pred EeCCeEEEEEEEEEECC-------CCcEEEEEEEEEEEEeCCCCceecCCHHH------HHHHhhcCcc-ccc-------
Q 017534 168 SEGRIGTRRDWILKDYA-------TGEVIGRATSKWVMMNQDTRRLQKVSDDV------REEYLVFCPR-ELR------- 226 (370)
Q Consensus 168 ~~~r~~~~R~f~I~d~~-------~Gevla~a~s~wV~vD~~trRp~rip~e~------~e~~~~~~~~-~~~------- 226 (370)
..|+.++...-.++. + ...++++|..++|.+|.+++||+++|+-. +..|.....+ ..+
T Consensus 172 ~vGrSSMEV~v~V~~-~~~~~~~~~~~~~~~a~FtfVA~D~~~gkp~pVp~l~pete~Ek~~~e~a~~R~~~Rk~~r~~~ 250 (437)
T PLN02647 172 WVGRSSMEIQLEVIQ-PTKDESNTSDSVALTANFTFVARDSKTGKSAPVNRLSPETEEEKLLFEEAEARNKLRKKKRGEQ 250 (437)
T ss_pred EecCCeEEEEEEEEE-ccccCCCCcEEEEEEEEEEEEEEcCCCCCeeeCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999987666664 3 12468899999999999889999886422 2222100000 000
Q ss_pred -cc-CCccCc---------cccccCCCCCCcc------cceeeeeeeecccCcCCcccchhhHHHHHHHhCCc--ccccc
Q 017534 227 -LA-FPEENS---------SSSRKISKLEDPA------QYSRLGLIPRRADLDMNQHVNNVTYIGWLLESMPQ--DVIDT 287 (370)
Q Consensus 227 -l~-~p~e~~---------~~~~ki~~~~~~~------~~~~~~~~Vr~sDiD~ngHVNN~~Y~~w~~~~~~~--~~~~~ 287 (370)
.. .|+|.. ..+...|.+.++. ...+..+.+...|...+|.+.=..-+.|+.++... ..+..
T Consensus 251 ~~~~~~~e~~~l~~l~~~~~~~~~~p~l~~~~~v~m~dT~~~~~~iv~P~d~N~~g~iFGG~LM~~~De~A~i~A~r~a~ 330 (437)
T PLN02647 251 KREFENGEAERLEALLAEGRVFCDMPALADRNSILIRDTRLENSLICQPQQRNIHGRIFGGFLMRRAFELAFSTAYAFAG 330 (437)
T ss_pred cccCCchHHHHHHHHHHhccccccCcccCCccceeccccceEEEEEeCccccCCCCcEeHHHHHHHHHHHHHHHHHHHcC
Confidence 00 011000 0000112121111 11234466888999999999999999999876321 11112
Q ss_pred cc---eEEEEEEeccccCCCCEEEEEEEeeccC
Q 017534 288 HE---LQTITLDYRRECQQDDVVDSLTSAEPFE 317 (370)
Q Consensus 288 ~~---l~~~~i~Y~~e~~~gd~v~v~t~v~~~~ 317 (370)
.. +.--.|+|++|++.||.|.+.+.|...|
T Consensus 331 ~~~vt~svd~v~F~~PV~vGdil~l~A~V~yt~ 363 (437)
T PLN02647 331 LRPYFLEVDHVDFLRPVDVGDFLRFKSCVLYTE 363 (437)
T ss_pred CceEEEEecceEecCccccCcEEEEEEEEEEEe
Confidence 22 2344679999999999999877666543
No 29
>cd03443 PaaI_thioesterase PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).
Probab=98.11 E-value=3.7e-05 Score=62.80 Aligned_cols=92 Identities=11% Similarity=0.018 Sum_probs=75.1
Q ss_pred eeeeeeecccCcCCcccchhhHHHHHHHhCCcc---c---ccccceEEEEEEeccccCCCCEEEEEEEeeccCCCccccc
Q 017534 251 RLGLIPRRADLDMNQHVNNVTYIGWLLESMPQD---V---IDTHELQTITLDYRRECQQDDVVDSLTSAEPFEDAEPVSK 324 (370)
Q Consensus 251 ~~~~~Vr~sDiD~ngHVNN~~Y~~w~~~~~~~~---~---~~~~~l~~~~i~Y~~e~~~gd~v~v~t~v~~~~~~~~~~~ 324 (370)
...+.+.+.++|..|+|++..|..|++.+...- . .......+++++|++|++. +.+.+.+++...|+
T Consensus 15 ~~~~~~~~~~~n~~g~vhgg~l~~l~d~a~~~~~~~~~~~~~~~~~~~~~i~f~~p~~~-~~v~~~~~v~~~g~------ 87 (113)
T cd03443 15 VLRLPVRPRHLNPGGIVHGGAIATLADTAGGLAALSALPPGALAVTVDLNVNYLRPARG-GDLTARARVVKLGR------ 87 (113)
T ss_pred EEEeeCcHhhcCCCCeEeHHHHHHHHHHHHHHHHhhccCCCCceEEEEEEEeEEcCCCC-CeEEEEEEEEecCc------
Confidence 467889999999999999999999999886421 1 1234678999999999999 99999999988764
Q ss_pred ccCCCCCCcccCCCCCceEEEEEEEECCCCcEEEEEEEEEE
Q 017534 325 LQGTNGSPAITGDKEDNHQFLHLLRLSGDGSEINRGRSVWR 365 (370)
Q Consensus 325 ~~~~~g~~~~~~~~~~~~~~~h~l~~~~dG~~ia~~~t~W~ 365 (370)
....+...+. .++|+++++|...|+
T Consensus 88 ---------------~~~~~~~~~~-~~~~~~~a~a~~~~~ 112 (113)
T cd03443 88 ---------------RLAVVEVEVT-DEDGKLVATARGTFA 112 (113)
T ss_pred ---------------eEEEEEEEEE-CCCCCEEEEEEEEEe
Confidence 3566777774 456999999999996
No 30
>COG3884 FatA Acyl-ACP thioesterase [Lipid metabolism]
Probab=98.04 E-value=2e-05 Score=73.28 Aligned_cols=91 Identities=14% Similarity=-0.013 Sum_probs=71.3
Q ss_pred CCccEEEEEEeeecCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCCCCccchhhhhhcCeEEEeEeeeeeEccccCCCCE
Q 017534 80 DGLSYKEKFIVRCYEVGINKTATVETIANLLQEVGCNHAQSVGFSTDGFATTTTMRKLHLIWVTARMHIEIYKYPAWSDV 159 (370)
Q Consensus 80 ~~~~f~~~~~Vr~~D~D~~Ghv~~~~yl~~~qea~~~~~~~lG~~~~~~~~~~~l~~~gl~wVv~r~~Iey~r~p~~gD~ 159 (370)
...++...|.||++|+|.||||||+.|..|+.|.-..++..+- ...++.++|.+|..+||+
T Consensus 149 ~e~s~~~~f~vR~~DID~f~HvNNskY~~wi~e~l~~~~~~~~-------------------~p~r~~l~y~keva~G~~ 209 (250)
T COG3884 149 LEASEIHDFPVRYTDIDMFGHVNNSKYWSWIEEVLGSEFLKLY-------------------GPLRLTLEYVKEVAPGEK 209 (250)
T ss_pred ccccccccceeEEEeeccccccccceehHHHHHHHhhhhHhhc-------------------ccceeEEEEEcccCCCCe
Confidence 3346777899999999999999999999999998775554322 234688999999999999
Q ss_pred EEEEEEEEEeCCeEEEEEEEEEECCCCcEEEEEEEEE
Q 017534 160 VEIETWCQSEGRIGTRRDWILKDYATGEVIGRATSKW 196 (370)
Q Consensus 160 V~I~Twv~~~~r~~~~R~f~I~d~~~Gevla~a~s~w 196 (370)
|+|.+.+...+..-. +. .||.+.+.+..+|
T Consensus 210 iti~~e~~~~~s~~~------f~-~d~~v~~lt~i~~ 239 (250)
T COG3884 210 ITIVYEVHPLESKHQ------FT-SDGQVNALTYIVG 239 (250)
T ss_pred EEEEEEEcccCceee------ec-CCcceEEEEEEEe
Confidence 999999887664321 23 5788888777776
No 31
>COG1607 Acyl-CoA hydrolase [Lipid metabolism]
Probab=97.95 E-value=0.00043 Score=61.43 Aligned_cols=112 Identities=14% Similarity=0.044 Sum_probs=90.2
Q ss_pred EEEEeeecCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCCCCccchhhhhhcCeEEEeEee-eeeEccccCCCCEEEEEE
Q 017534 86 EKFIVRCYEVGINKTATVETIANLLQEVGCNHAQSVGFSTDGFATTTTMRKLHLIWVTARM-HIEIYKYPAWSDVVEIET 164 (370)
Q Consensus 86 ~~~~Vr~~D~D~~Ghv~~~~yl~~~qea~~~~~~~lG~~~~~~~~~~~l~~~gl~wVv~r~-~Iey~r~p~~gD~V~I~T 164 (370)
....|-..|++++|.+.=..++.||.+++.-.+....-+ .-|.+.. .+.|.+|++.||.|.+..
T Consensus 16 ~~~lv~P~dtN~~g~ifGG~lm~~mD~~a~i~A~~~a~~---------------~vVTasvd~v~F~~Pv~vGd~v~~~a 80 (157)
T COG1607 16 LRTLVMPSDTNPNGTIFGGWLLSWMDLAAAIAASRHAGG---------------RVVTASVDSVDFKKPVRVGDIVCLYA 80 (157)
T ss_pred EEEEecCCccCcccccccHHHHHHHHHHHHHHHHHHhCC---------------eEEEEEeceEEEccccccCcEEEEEE
Confidence 567899999999999999999999999988776553322 2344443 589999999999999999
Q ss_pred EEEEeCCeEEEEEEEEEE--CC--CCcEEEEEEEEEEEEeCCCCceecCCHHH
Q 017534 165 WCQSEGRIGTRRDWILKD--YA--TGEVIGRATSKWVMMNQDTRRLQKVSDDV 213 (370)
Q Consensus 165 wv~~~~r~~~~R~f~I~d--~~--~Gevla~a~s~wV~vD~~trRp~rip~e~ 213 (370)
|+...|+.++...-+++. .. .......+..++|-+|-+ +||.++|++.
T Consensus 81 ~v~~~GrTSm~V~Vev~~~~~~~~~~~~~t~~~ft~VAvd~~-gkP~~vp~~~ 132 (157)
T COG1607 81 RVVYTGRTSMEVGVEVWAEDIRSGERRLATSAYFTFVAVDED-GKPTPVPREE 132 (157)
T ss_pred EEeecCcccEEEEEEEEEecccCCcceEeeeEEEEEEEECCC-CCcccCCccC
Confidence 999999999988777763 11 235567788899999988 9999998753
No 32
>TIGR00369 unchar_dom_1 uncharacterized domain 1. Most proteins containing this domain consist almost entirely of a single copy of this domain. A protein from C. elegans consists of two tandem copies of the domain. The domain is also found as the N-terminal region of an apparent initiation factor eIF-2B alpha subunit of Aquifex aeolicus. The function of the domain is unknown.
Probab=97.78 E-value=0.00087 Score=55.87 Aligned_cols=98 Identities=10% Similarity=-0.057 Sum_probs=80.4
Q ss_pred EEEEEeeecCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCCCCccchhhhhhcCeEEEeEeeeeeEccccCCCCEEEEEE
Q 017534 85 KEKFIVRCYEVGINKTATVETIANLLQEVGCNHAQSVGFSTDGFATTTTMRKLHLIWVTARMHIEIYKYPAWSDVVEIET 164 (370)
Q Consensus 85 ~~~~~Vr~~D~D~~Ghv~~~~yl~~~qea~~~~~~~lG~~~~~~~~~~~l~~~gl~wVv~r~~Iey~r~p~~gD~V~I~T 164 (370)
...+.+....++..|.++=..++.+++.+....... .. ..+...+.+.++++|.+|+.-| .|+++.
T Consensus 19 ~~~~~v~~~~~n~~g~vhGG~l~~l~D~a~~~a~~~-~~------------~~~~~~vt~~l~i~f~~p~~~g-~l~a~a 84 (117)
T TIGR00369 19 EATMPVDERTLQPFGSLHGGVSAALADTAGSAAGYL-CN------------SGGQAVVGLELNANHLRPAREG-KVRAIA 84 (117)
T ss_pred EEEEEcCHHHcCCcccChHHHHHHHHHHHHHHHHHh-hc------------CCCceEEEEEEEeeeccccCCC-EEEEEE
Confidence 556788888999999999999999999887332211 11 1234568889999999999998 999999
Q ss_pred EEEEeCCeEEEEEEEEEECCCCcEEEEEEEEEE
Q 017534 165 WCQSEGRIGTRRDWILKDYATGEVIGRATSKWV 197 (370)
Q Consensus 165 wv~~~~r~~~~R~f~I~d~~~Gevla~a~s~wV 197 (370)
++.+.++....-+-+++| ++|+++|+|+.++.
T Consensus 85 ~v~~~gr~~~~~~~~i~~-~~g~~va~~~~t~~ 116 (117)
T TIGR00369 85 QVVHLGRQTGVAEIEIVD-EQGRLCALSRGTTA 116 (117)
T ss_pred EEEecCceEEEEEEEEEC-CCCCEEEEEEEEEc
Confidence 999999888888889999 89999999999874
No 33
>TIGR02286 PaaD phenylacetic acid degradation protein PaaD. Sequences scoring between trusted and noise include those from archaea and other species not known to catabolize phenylacetic acid and which are not adjacent to other genes potentially involved with such a pathway.
Probab=97.71 E-value=0.0011 Score=55.22 Aligned_cols=97 Identities=16% Similarity=0.060 Sum_probs=79.1
Q ss_pred EEEEEeeecCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCCCCccchhhhhhcCeEEEeEeeeeeEccccCCCCEEEEEE
Q 017534 85 KEKFIVRCYEVGINKTATVETIANLLQEVGCNHAQSVGFSTDGFATTTTMRKLHLIWVTARMHIEIYKYPAWSDVVEIET 164 (370)
Q Consensus 85 ~~~~~Vr~~D~D~~Ghv~~~~yl~~~qea~~~~~~~lG~~~~~~~~~~~l~~~gl~wVv~r~~Iey~r~p~~gD~V~I~T 164 (370)
...+.++...++..|.++=..++.+++.+....... . +..-+....+++|.+|+..||.|.++.
T Consensus 17 ~~~l~~~~~~~n~~g~~HGG~i~al~D~~~~~~~~~--~--------------~~~~~t~~~~i~f~rp~~~G~~l~~~a 80 (114)
T TIGR02286 17 RVAMTVRADMLNGHGTAHGGFLFSLADSAFAYACNS--Y--------------GDAAVAAQCTIDFLRPGRAGERLEAEA 80 (114)
T ss_pred EEEEECCHHHcCcCCCchHHHHHHHHHHHHHHHhcC--C--------------CCceEEEEEEEEEecCCCCCCEEEEEE
Confidence 346788889999999999999999999986433211 0 111356788999999999999999999
Q ss_pred EEEEeCCeEEEEEEEEEECCCCcEEEEEEEEEEE
Q 017534 165 WCQSEGRIGTRRDWILKDYATGEVIGRATSKWVM 198 (370)
Q Consensus 165 wv~~~~r~~~~R~f~I~d~~~Gevla~a~s~wV~ 198 (370)
++.+.++.....+-++++ ++|+++|.++.+|-.
T Consensus 81 ~v~~~g~~~~~~~~~i~~-~~~~~va~~~~t~~~ 113 (114)
T TIGR02286 81 VEVSRGGRTGTYDVEVVN-QEGELVALFRGTSRR 113 (114)
T ss_pred EEEEeCCcEEEEEEEEEc-CCCCEEEEEEEEEEE
Confidence 999988877777788998 899999999999864
No 34
>PRK10293 acyl-CoA esterase; Provisional
Probab=97.27 E-value=0.011 Score=51.19 Aligned_cols=100 Identities=8% Similarity=-0.107 Sum_probs=81.6
Q ss_pred EEEEEeeecCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCCCCccchhhhhhcCeEEEeEeeeeeEccccCCCCEEEEEE
Q 017534 85 KEKFIVRCYEVGINKTATVETIANLLQEVGCNHAQSVGFSTDGFATTTTMRKLHLIWVTARMHIEIYKYPAWSDVVEIET 164 (370)
Q Consensus 85 ~~~~~Vr~~D~D~~Ghv~~~~yl~~~qea~~~~~~~lG~~~~~~~~~~~l~~~gl~wVv~r~~Iey~r~p~~gD~V~I~T 164 (370)
...+.|+...+.+.|.++=..++.+++.+........ . ..+...+...++++|.+|..-| .|..+-
T Consensus 37 ~~~~~v~~~~~n~~G~lHGGv~~tLaD~a~~~a~~~~-~------------~~~~~~vTiel~infl~p~~~g-~l~a~a 102 (136)
T PRK10293 37 EATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGYLC-T------------EGEQKVVGLEINANHVRSAREG-RVRGVC 102 (136)
T ss_pred EEEEEcCHHHcCCcCcccHHHHHHHHHHHHHHHHHhc-c------------cCCceEEEEEEEeEEecccCCc-eEEEEE
Confidence 4567888888999999999999999987654332111 1 1344678999999999999876 699999
Q ss_pred EEEEeCCeEEEEEEEEEECCCCcEEEEEEEEEEEE
Q 017534 165 WCQSEGRIGTRRDWILKDYATGEVIGRATSKWVMM 199 (370)
Q Consensus 165 wv~~~~r~~~~R~f~I~d~~~Gevla~a~s~wV~v 199 (370)
++...|+.....+-+++| ++|+++|.++.+|.++
T Consensus 103 ~vv~~Gr~~~~~~~~v~d-~~g~l~A~~~~t~~i~ 136 (136)
T PRK10293 103 KPLHLGSRHQVWQIEIFD-EKGRLCCSSRLTTAIL 136 (136)
T ss_pred EEEecCCCEEEEEEEEEe-CCCCEEEEEEEEEEEC
Confidence 999999888888889999 8999999999999864
No 35
>PRK11688 hypothetical protein; Provisional
Probab=97.12 E-value=0.013 Score=51.47 Aligned_cols=111 Identities=13% Similarity=0.100 Sum_probs=79.6
Q ss_pred EEEEEeeecCCC--CCCCcCHHHHHHHHHHHHHHHHHHcCC-CCCCccchhhhhhcCeEEEeEeeeeeEccccCCCCEEE
Q 017534 85 KEKFIVRCYEVG--INKTATVETIANLLQEVGCNHAQSVGF-STDGFATTTTMRKLHLIWVTARMHIEIYKYPAWSDVVE 161 (370)
Q Consensus 85 ~~~~~Vr~~D~D--~~Ghv~~~~yl~~~qea~~~~~~~lG~-~~~~~~~~~~l~~~gl~wVv~r~~Iey~r~p~~gD~V~ 161 (370)
...+.++-..++ ..|.++=..++.+++.+....+...+. ...... ...........+.+.++++|.+|.. |+.|+
T Consensus 40 ~~~l~~~~~~~~n~~~G~vHGG~i~tl~D~a~g~a~~~~~~~~~~~~~-~~~~~~~~~~~vTi~l~i~fl~p~~-g~~l~ 117 (154)
T PRK11688 40 ELSFKMQPELVGNIAQSILHGGVIASVLDVAGGLVCVGGILARHEDIS-EEELRQRLSRLGTIDLRVDYLRPGR-GERFT 117 (154)
T ss_pred EEEeeCCHHHcCCCCcCeeeHHHHHHHHHHHHHHHHHhhccccccccc-ccccccccccceEEEEEEEeeccCC-CCeEE
Confidence 345677777785 579999999999998887655433221 110000 0000011223468899999999996 99999
Q ss_pred EEEEEEEeCCeEEEEEEEEEECCCCcEEEEEEEEEEE
Q 017534 162 IETWCQSEGRIGTRRDWILKDYATGEVIGRATSKWVM 198 (370)
Q Consensus 162 I~Twv~~~~r~~~~R~f~I~d~~~Gevla~a~s~wV~ 198 (370)
++.++.+.++.....+-+|++ ++|+++|+|+.+|.+
T Consensus 118 a~a~v~~~g~r~~~~~~~i~~-~~g~lvA~a~~t~~v 153 (154)
T PRK11688 118 ATSSVLRAGNKVAVARMELHN-EQGVHIASGTATYLV 153 (154)
T ss_pred EEEEEEEccCCEEEEEEEEEC-CCCCEEEEEEEEEEe
Confidence 999999998877777789998 889999999999864
No 36
>PRK10254 thioesterase; Provisional
Probab=97.09 E-value=0.031 Score=48.50 Aligned_cols=100 Identities=10% Similarity=-0.063 Sum_probs=82.4
Q ss_pred EEEEEeeecCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCCCCccchhhhhhcCeEEEeEeeeeeEccccCCCCEEEEEE
Q 017534 85 KEKFIVRCYEVGINKTATVETIANLLQEVGCNHAQSVGFSTDGFATTTTMRKLHLIWVTARMHIEIYKYPAWSDVVEIET 164 (370)
Q Consensus 85 ~~~~~Vr~~D~D~~Ghv~~~~yl~~~qea~~~~~~~lG~~~~~~~~~~~l~~~gl~wVv~r~~Iey~r~p~~gD~V~I~T 164 (370)
...+.|+...+.+.|.++=..++.+++.+..-..... . ..+...+...++++|.+|..-| .|..+.
T Consensus 37 ~~~l~v~~~~~n~~G~vHGGv~~tLaD~a~g~A~~~~-~------------~~g~~~vTiel~in~Lrp~~~g-~l~a~a 102 (137)
T PRK10254 37 EAEMPVDTRTHQPFGLLHGGASAALAETLGSMAGFLM-T------------RDGQCVVGTELNATHHRPVSEG-KVRGVC 102 (137)
T ss_pred EEEEEcCccccCCCCcchHHHHHHHHHHHHHHHHHhh-C------------CCCCeEEEEEEEeEEeccCcCC-eEEEEE
Confidence 4466788888999999999999999998765444221 1 2355689999999999999866 799999
Q ss_pred EEEEeCCeEEEEEEEEEECCCCcEEEEEEEEEEEE
Q 017534 165 WCQSEGRIGTRRDWILKDYATGEVIGRATSKWVMM 199 (370)
Q Consensus 165 wv~~~~r~~~~R~f~I~d~~~Gevla~a~s~wV~v 199 (370)
.+...||.....+-+|+| ++|+++|.++.+..++
T Consensus 103 ~vi~~Gr~~~v~~~~v~d-~~g~l~a~~~~t~~i~ 136 (137)
T PRK10254 103 QPLHLGRQNQSWEIVVFD-EQGRRCCTCRLGTAVL 136 (137)
T ss_pred EEEecCcCEEEEEEEEEc-CCCCEEEEEEEEEEEe
Confidence 999999988888889999 8999999999987765
No 37
>COG5496 Predicted thioesterase [General function prediction only]
Probab=96.83 E-value=0.058 Score=46.03 Aligned_cols=110 Identities=15% Similarity=0.129 Sum_probs=85.8
Q ss_pred CCCccEEEEEEeeecCCCCC-------CCcCHHHHHHHHHHHHHHHHHHcCCCCCCccchhhhhhcCeEEEeEeeeeeEc
Q 017534 79 EDGLSYKEKFIVRCYEVGIN-------KTATVETIANLLQEVGCNHAQSVGFSTDGFATTTTMRKLHLIWVTARMHIEIY 151 (370)
Q Consensus 79 ~~~~~f~~~~~Vr~~D~D~~-------Ghv~~~~yl~~~qea~~~~~~~lG~~~~~~~~~~~l~~~gl~wVv~r~~Iey~ 151 (370)
++++.++.++.|+-.+++.- ..+--+.++.||++|+.+.++. .+ ..|.+-|-+...++-.
T Consensus 2 ~~g~~~e~~~lv~dn~t~~~~~~~~~~~VlATp~mi~~~E~a~~el~~~-~L------------d~g~ttVG~ev~vrHl 68 (130)
T COG5496 2 MDGLTLEGEFLVRDNHTVPPAEGSGMLNVLATPAMIGFMENASYELLQP-YL------------DNGETTVGTEVLVRHL 68 (130)
T ss_pred CCceeeEEEEEecccccCchhHhCCccceeehHHHHHHHHHHHHHHHHh-hC------------cCCcceeeEEEEeeec
Confidence 46788999999999998831 2334456788999998887765 22 3577889999999999
Q ss_pred cccCCCCEEEEEEEEEEeCCeEEEEEEEEEECCCCcEEEEEEEEEEEEeCCC
Q 017534 152 KYPAWSDVVEIETWCQSEGRIGTRRDWILKDYATGEVIGRATSKWVMMNQDT 203 (370)
Q Consensus 152 r~p~~gD~V~I~Twv~~~~r~~~~R~f~I~d~~~Gevla~a~s~wV~vD~~t 203 (370)
++...|.+|+|.+.+.++.+-......+.. ++|+++.+|.-+-+.+|.++
T Consensus 69 a~~~~G~~V~i~~~l~~v~Gr~v~f~i~a~--~~~~~Ig~g~h~R~iv~~~k 118 (130)
T COG5496 69 AATPPGLTVTIGARLEKVEGRKVKFRIIAM--EGGDKIGEGTHTRVIVPREK 118 (130)
T ss_pred cCCCCCCeEEEEEEEEEEeccEEEEEEEEe--eCCcEEeeeEEEEEEecHHH
Confidence 999999999999999998655554333333 68999999999999988754
No 38
>COG2050 PaaI HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.42 E-value=0.15 Score=44.02 Aligned_cols=104 Identities=16% Similarity=0.103 Sum_probs=84.2
Q ss_pred EEEEEeeecCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCCCCccchhhhhhcCeEEEeEeeeeeEccccCCCCEEEEEE
Q 017534 85 KEKFIVRCYEVGINKTATVETIANLLQEVGCNHAQSVGFSTDGFATTTTMRKLHLIWVTARMHIEIYKYPAWSDVVEIET 164 (370)
Q Consensus 85 ~~~~~Vr~~D~D~~Ghv~~~~yl~~~qea~~~~~~~lG~~~~~~~~~~~l~~~gl~wVv~r~~Iey~r~p~~gD~V~I~T 164 (370)
...+.+.-....+.|.++=..++.+++.+.........-. ...-+.+.++|+|.||.+-|+ |+.+-
T Consensus 37 ~~~l~~~~~~~~~~G~~HGG~i~alaD~a~~~a~~~~~~~-------------~~~~~ti~l~i~flr~~~~g~-v~a~a 102 (141)
T COG2050 37 EATLPVDPELLNPGGILHGGVIAALADSAAGLAANSLLGV-------------VALAVTLELNINFLRPVKEGD-VTAEA 102 (141)
T ss_pred EEEeecCHHHcCCCceeeHHHHHHHHHHHHHHHHhhccCc-------------cceeEEEEEEehhccCCCCCe-EEEEE
Confidence 4456777777789999999999999999887766553321 112288999999999999999 99999
Q ss_pred EEEEeCCeEEEEEEEEEECCCCcEEEEEEEEEEEEeCC
Q 017534 165 WCQSEGRIGTRRDWILKDYATGEVIGRATSKWVMMNQD 202 (370)
Q Consensus 165 wv~~~~r~~~~R~f~I~d~~~Gevla~a~s~wV~vD~~ 202 (370)
.+...|+.-...+.++++.+.|+++|.++.++.+++..
T Consensus 103 ~v~~~G~~~~v~~i~v~~~~~~~lva~~~~t~~v~~~~ 140 (141)
T COG2050 103 RVLHLGRRVAVVEIEVKNDEGGRLVAKGTGTYAVLRKR 140 (141)
T ss_pred EEEeeCCEEEEEEEEEEECCCCeEEEEEEEEEEEecCC
Confidence 99999998888888999525569999999999988653
No 39
>KOG3328 consensus HGG motif-containing thioesterase [General function prediction only]
Probab=96.35 E-value=0.069 Score=46.83 Aligned_cols=101 Identities=15% Similarity=0.072 Sum_probs=82.9
Q ss_pred EEEEEEeeecCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCCCCccchhhhhhcCeEEEeEeeeeeEccccCCCCEEEEE
Q 017534 84 YKEKFIVRCYEVGINKTATVETIANLLQEVGCNHAQSVGFSTDGFATTTTMRKLHLIWVTARMHIEIYKYPAWSDVVEIE 163 (370)
Q Consensus 84 f~~~~~Vr~~D~D~~Ghv~~~~yl~~~qea~~~~~~~lG~~~~~~~~~~~l~~~gl~wVv~r~~Iey~r~p~~gD~V~I~ 163 (370)
-...++|....++.+|.++-...+.+.+.....-+-.- +..-.-|-+.++|.|..++++||.|.|+
T Consensus 39 v~ce~kV~~~~~N~~k~LHGG~tAtLvD~i~s~~~~~~--------------~~~~~gvsvdLsvsyL~~AklGe~l~i~ 104 (148)
T KOG3328|consen 39 VSCELKVTPDHLNRFKTLHGGATATLVDLITSAALLMT--------------SGFKPGVSVDLSVSYLSSAKLGEELEIE 104 (148)
T ss_pred EEEEEEeCHHHcCccccccccchhhHHHHHhhHHHHhc--------------cCCCCceEEEEEhhhccccCCCCeEEEE
Confidence 45678999999999999999999998888776532221 1122348899999999999999999999
Q ss_pred EEEEEeCCeEEEEEEEEEECCCCcEEEEEEEEEEE
Q 017534 164 TWCQSEGRIGTRRDWILKDYATGEVIGRATSKWVM 198 (370)
Q Consensus 164 Twv~~~~r~~~~R~f~I~d~~~Gevla~a~s~wV~ 198 (370)
..+.+.|+.....+-+++...+|++++.++-+-.+
T Consensus 105 a~~vr~Gk~la~t~v~l~~K~t~kiia~grhtk~~ 139 (148)
T KOG3328|consen 105 ATVVRVGKTLAFTDVELRRKSTGKIIAKGRHTKYF 139 (148)
T ss_pred EEEeecCceEEEEEEEEEEcCCCeEEEecceEEEe
Confidence 99999999888888889887789999988766554
No 40
>cd03449 R_hydratase (R)-hydratase [(R)-specific enoyl-CoA hydratase] catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. (R)-hydratase contains a hot-dog fold similar to those of thioesterase II, and beta-hydroxydecanoyl-ACP dehydratase, MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit. The active site lies within a substrate-binding tunnel formed by the (R)-hydratase homodimer. A subset of the bacterial (R)-hydratases contain a C-terminal phosphotransacetylase (PTA) domain.
Probab=96.31 E-value=0.05 Score=45.26 Aligned_cols=57 Identities=9% Similarity=0.019 Sum_probs=46.5
Q ss_pred EEEeEeeeeeEccccCCCCEEEEEEEEEEeCC--eEEEEEEEEEECCCCcEEEEEEEEEE
Q 017534 140 IWVTARMHIEIYKYPAWSDVVEIETWCQSEGR--IGTRRDWILKDYATGEVIGRATSKWV 197 (370)
Q Consensus 140 ~wVv~r~~Iey~r~p~~gD~V~I~Twv~~~~r--~~~~R~f~I~d~~~Gevla~a~s~wV 197 (370)
+.+....+++|.+|...||+|.++.++.+... ........+++ ++|+++++|..+.+
T Consensus 69 ~~~~~~~~~~f~~Pv~~gd~l~~~~~v~~~~~~~~~v~~~~~~~~-~~g~~v~~g~~~~~ 127 (128)
T cd03449 69 GTIYLSQSLRFLRPVFIGDTVTATVTVTEKREDKKRVTLETVCTN-QNGEVVIEGEAVVL 127 (128)
T ss_pred eEEEEEEEEEECCCccCCCEEEEEEEEEEEecCCCEEEEEEEEEe-CCCCEEEEEEEEEe
Confidence 55677899999999999999999999988653 45555667888 78999999987643
No 41
>TIGR02286 PaaD phenylacetic acid degradation protein PaaD. Sequences scoring between trusted and noise include those from archaea and other species not known to catabolize phenylacetic acid and which are not adjacent to other genes potentially involved with such a pathway.
Probab=96.06 E-value=0.12 Score=42.84 Aligned_cols=94 Identities=11% Similarity=0.091 Sum_probs=69.2
Q ss_pred eeeeeeecccCcCCcccchhhHHHHHHHhCCcccc---cccceEEEEEEeccccCCCCEEEEEEEeeccCCCcccccccC
Q 017534 251 RLGLIPRRADLDMNQHVNNVTYIGWLLESMPQDVI---DTHELQTITLDYRRECQQDDVVDSLTSAEPFEDAEPVSKLQG 327 (370)
Q Consensus 251 ~~~~~Vr~sDiD~ngHVNN~~Y~~w~~~~~~~~~~---~~~~l~~~~i~Y~~e~~~gd~v~v~t~v~~~~~~~~~~~~~~ 327 (370)
...+.++...++.+|-+.=..++.+++.+...... ....-..++++|.+|+..||.|.+..++.+.|.
T Consensus 17 ~~~l~~~~~~~n~~g~~HGG~i~al~D~~~~~~~~~~~~~~~t~~~~i~f~rp~~~G~~l~~~a~v~~~g~--------- 87 (114)
T TIGR02286 17 RVAMTVRADMLNGHGTAHGGFLFSLADSAFAYACNSYGDAAVAAQCTIDFLRPGRAGERLEAEAVEVSRGG--------- 87 (114)
T ss_pred EEEEECCHHHcCcCCCchHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEEecCCCCCCEEEEEEEEEEeCC---------
Confidence 35678888888888999888888888877421111 112346889999999999999999999988653
Q ss_pred CCCCCcccCCCCCceEEEEEEEECCCCcEEEEEEEEEEe
Q 017534 328 TNGSPAITGDKEDNHQFLHLLRLSGDGSEINRGRSVWRK 366 (370)
Q Consensus 328 ~~g~~~~~~~~~~~~~~~h~l~~~~dG~~ia~~~t~W~~ 366 (370)
....+.-.+ ...+|+++|.++.+|+.
T Consensus 88 ------------~~~~~~~~i-~~~~~~~va~~~~t~~~ 113 (114)
T TIGR02286 88 ------------RTGTYDVEV-VNQEGELVALFRGTSRR 113 (114)
T ss_pred ------------cEEEEEEEE-EcCCCCEEEEEEEEEEE
Confidence 122334445 44789999999999985
No 42
>PLN02322 acyl-CoA thioesterase
Probab=95.77 E-value=0.48 Score=42.05 Aligned_cols=102 Identities=12% Similarity=-0.045 Sum_probs=79.4
Q ss_pred EEEEEeeecCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCCCCccchhhhhhcCeEEEeEeeeeeEccccCCCCEEEEEE
Q 017534 85 KEKFIVRCYEVGINKTATVETIANLLQEVGCNHAQSVGFSTDGFATTTTMRKLHLIWVTARMHIEIYKYPAWSDVVEIET 164 (370)
Q Consensus 85 ~~~~~Vr~~D~D~~Ghv~~~~yl~~~qea~~~~~~~lG~~~~~~~~~~~l~~~gl~wVv~r~~Iey~r~p~~gD~V~I~T 164 (370)
...+.|+...+++.|.++=..++.+++.|.. ++..... .+...+.+.++++|.+|.+.|+.|..+-
T Consensus 29 ~~~m~v~~~~~N~~G~vHGGv~atLaDta~g-~A~~~~~-------------~~~~~vTiel~infLrpa~~G~~L~Aea 94 (154)
T PLN02322 29 TGRLPVSPMCCQPFKVLHGGVSALIAESLAS-LGAHMAS-------------GFKRVAGIQLSINHLKSADLGDLVFAEA 94 (154)
T ss_pred EEEEECCHHHcCCCCCccHHHHHHHHHHHHH-HHHhhcc-------------CCCceEEEEEEEEEeccCCCCCEEEEEE
Confidence 3456788888999999999999999986654 2211111 1224688999999999999999999999
Q ss_pred EEEEeCCeEEEEEEEEEECC-----CCcEEEEEEEEEEEEe
Q 017534 165 WCQSEGRIGTRRDWILKDYA-----TGEVIGRATSKWVMMN 200 (370)
Q Consensus 165 wv~~~~r~~~~R~f~I~d~~-----~Gevla~a~s~wV~vD 200 (370)
++...|+.....+-+|++.. +|.+++.++.+..++.
T Consensus 95 ~vv~~Gr~~~~~ev~V~~~~~~~~~~~~lva~a~~T~~~~~ 135 (154)
T PLN02322 95 TPVSTGKTIQVWEVKLWKTTDKDKANKILISSSRVTLICNL 135 (154)
T ss_pred EEEecCCCEEEEEEEEEECCCCcccCCeEEEEEEEEEEEcc
Confidence 99999988888888998731 2789999998886543
No 43
>PF14539 DUF4442: Domain of unknown function (DUF4442); PDB: 1YOC_B 1SH8_B.
Probab=95.19 E-value=0.33 Score=41.56 Aligned_cols=98 Identities=17% Similarity=0.062 Sum_probs=65.6
Q ss_pred EEEEEEeeecCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCCCCccchhhhhhcCeEEEeEeeeeeEccccCCCCEEEEE
Q 017534 84 YKEKFIVRCYEVGINKTATVETIANLLQEVGCNHAQSVGFSTDGFATTTTMRKLHLIWVTARMHIEIYKYPAWSDVVEIE 163 (370)
Q Consensus 84 f~~~~~Vr~~D~D~~Ghv~~~~yl~~~qea~~~~~~~lG~~~~~~~~~~~l~~~gl~wVv~r~~Iey~r~p~~gD~V~I~ 163 (370)
....+..++.--+..|.++-.+++.+.|-+....+.. .+ ..++.|++..++|+|.+|.+ ..|..+
T Consensus 31 ~~v~l~~~~~~~N~~gt~h~gAl~~laE~~~g~~~~~-~l------------~~~~~~~~k~~~i~f~kpa~--g~v~a~ 95 (132)
T PF14539_consen 31 VVVRLPLRPRNRNHVGTIHAGALFTLAEPAYGLLLMS-NL------------GDKYRVWDKSAEIDFLKPAR--GDVTAT 95 (132)
T ss_dssp EEEEE-S-CCGB-TTSSB-HHHHHHHHHCHHHHHHHH-HS-------------TTEEEEEEEEEEEE-S-----S-EEEE
T ss_pred EEEEEcCCccccCcCcchHHHHHHHHHHHHHHHHHHH-hC------------CCcEEEEEEeeEEEEEeccC--CcEEEE
Confidence 4556777788899999999999999999887766543 11 12677889999999999974 455555
Q ss_pred EEEEE--eC-CeEEEEEEEEEECCCCcEEEEEEEEEE
Q 017534 164 TWCQS--EG-RIGTRRDWILKDYATGEVIGRATSKWV 197 (370)
Q Consensus 164 Twv~~--~~-r~~~~R~f~I~d~~~Gevla~a~s~wV 197 (370)
..+.. .+ +........++| ++|++++++..+|-
T Consensus 96 ~~~~~e~~~~~~~~~~~v~i~D-~~G~~Va~~~~t~~ 131 (132)
T PF14539_consen 96 AELTEEQIGERGELTVPVEITD-ADGEVVAEATITWY 131 (132)
T ss_dssp EE-TCCHCCHEEEEEEEEEEEE-TTC-EEEEEEEEEE
T ss_pred EEcCHHHhCCCcEEEEEEEEEE-CCCCEEEEEEEEEE
Confidence 55444 33 455556668899 99999999999995
No 44
>TIGR00369 unchar_dom_1 uncharacterized domain 1. Most proteins containing this domain consist almost entirely of a single copy of this domain. A protein from C. elegans consists of two tandem copies of the domain. The domain is also found as the N-terminal region of an apparent initiation factor eIF-2B alpha subunit of Aquifex aeolicus. The function of the domain is unknown.
Probab=94.96 E-value=0.53 Score=38.94 Aligned_cols=93 Identities=5% Similarity=-0.093 Sum_probs=67.3
Q ss_pred eeeeeeeecccCcCCcccchhhHHHHHHHhCCc----ccc--cccceEEEEEEeccccCCCCEEEEEEEeeccCCCcccc
Q 017534 250 SRLGLIPRRADLDMNQHVNNVTYIGWLLESMPQ----DVI--DTHELQTITLDYRRECQQDDVVDSLTSAEPFEDAEPVS 323 (370)
Q Consensus 250 ~~~~~~Vr~sDiD~ngHVNN~~Y~~w~~~~~~~----~~~--~~~~l~~~~i~Y~~e~~~gd~v~v~t~v~~~~~~~~~~ 323 (370)
....+.+.....+..|.|+=.....+++.+... ... ....-.+++++|.+|+..| .|.+..++.+.|.
T Consensus 18 ~~~~~~v~~~~~n~~g~vhGG~l~~l~D~a~~~a~~~~~~~~~~~vt~~l~i~f~~p~~~g-~l~a~a~v~~~gr----- 91 (117)
T TIGR00369 18 LEATMPVDERTLQPFGSLHGGVSAALADTAGSAAGYLCNSGGQAVVGLELNANHLRPAREG-KVRAIAQVVHLGR----- 91 (117)
T ss_pred EEEEEEcCHHHcCCcccChHHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEeeeccccCCC-EEEEEEEEEecCc-----
Confidence 345678888888889999988888888776511 011 1224468999999999999 9999999888663
Q ss_pred cccCCCCCCcccCCCCCceEEEEEEEECCCCcEEEEEEEEEE
Q 017534 324 KLQGTNGSPAITGDKEDNHQFLHLLRLSGDGSEINRGRSVWR 365 (370)
Q Consensus 324 ~~~~~~g~~~~~~~~~~~~~~~h~l~~~~dG~~ia~~~t~W~ 365 (370)
....+.-.+ ..+||++++.++..+.
T Consensus 92 ----------------~~~~~~~~i-~~~~g~~va~~~~t~~ 116 (117)
T TIGR00369 92 ----------------QTGVAEIEI-VDEQGRLCALSRGTTA 116 (117)
T ss_pred ----------------eEEEEEEEE-ECCCCCEEEEEEEEEc
Confidence 122334445 4568999999998763
No 45
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=94.89 E-value=0.18 Score=50.23 Aligned_cols=107 Identities=20% Similarity=0.142 Sum_probs=89.8
Q ss_pred cCCCCCCCccEEEEEEeeecCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCCCCccchhhhhhcCeEEEeEeeeeeEccc
Q 017534 74 LGTLTEDGLSYKEKFIVRCYEVGINKTATVETIANLLQEVGCNHAQSVGFSTDGFATTTTMRKLHLIWVTARMHIEIYKY 153 (370)
Q Consensus 74 ~~~~~~~~~~f~~~~~Vr~~D~D~~Ghv~~~~yl~~~qea~~~~~~~lG~~~~~~~~~~~l~~~gl~wVv~r~~Iey~r~ 153 (370)
+-.|.+.+-.+...+.|-..-++..|.+.+..+..++.++....+.... +--.++=.+.+-|.+|
T Consensus 323 ~~~l~e~~~~~~~t~~V~P~M~n~~Gtis~gv~~~ll~e~~qr~l~k~~---------------~~niiIE~i~iyflk~ 387 (432)
T COG4109 323 ANNLSEKGDEYGVTVEVEPQMINSLGTISNGVFTELLTEVVQRVLRKKK---------------KRNIIIENITIYFLKP 387 (432)
T ss_pred HhhhhhhccccceEEEechhhccccccchHHHHHHHHHHHHHHHHHHhc---------------CCceEEEeeeeeeecc
Confidence 4456666666777789999999999999999999999999887776522 2235788899999999
Q ss_pred cCCCCEEEEEEEEEEeCCeEEEEEEEEEECCCCcEEEEEEEEEE
Q 017534 154 PAWSDVVEIETWCQSEGRIGTRRDWILKDYATGEVIGRATSKWV 197 (370)
Q Consensus 154 p~~gD~V~I~Twv~~~~r~~~~R~f~I~d~~~Gevla~a~s~wV 197 (370)
....+.|+|...+.+.+|.+...+++|+. +|.+++.|-...=
T Consensus 388 vqid~~l~I~prIl~~gR~~a~idvei~~--~~~ivaKAiv~~q 429 (432)
T COG4109 388 VQIDSVLEIYPRILEEGRKFAKIDVEIYH--DGQIVAKAIVTVQ 429 (432)
T ss_pred eecccEEEEeeeeeccccccceeEEEEee--Ccchhhhheeeee
Confidence 99999999999999999999999999995 7888888765543
No 46
>cd00556 Thioesterase_II Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=94.80 E-value=0.16 Score=40.14 Aligned_cols=58 Identities=16% Similarity=0.121 Sum_probs=51.3
Q ss_pred eEEEeEeeeeeEccccCCCCEEEEEEEEEEeCCeEEEEEEEEEECCCCcEEEEEEEEEE
Q 017534 139 LIWVTARMHIEIYKYPAWSDVVEIETWCQSEGRIGTRRDWILKDYATGEVIGRATSKWV 197 (370)
Q Consensus 139 l~wVv~r~~Iey~r~p~~gD~V~I~Twv~~~~r~~~~R~f~I~d~~~Gevla~a~s~wV 197 (370)
..-+...+++.|++++..++.+..+.++...++....++-++++ ++|++++.+.....
T Consensus 41 ~~~~t~~~~i~F~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~-~~G~lva~~~~~~~ 98 (99)
T cd00556 41 SGFASLDHHIYFHRPGDADEWLLYEVESLRDGRSRALRRGRAYQ-RDGKLVASATQSFL 98 (99)
T ss_pred CCeeeeEEEEEEcCCCCCCccEEEEEEecccCCCceEEEEEEEC-CCCcEEEEEEEeEc
Confidence 34578899999999999999999999999999888888889998 78999999987654
No 47
>cd01288 FabZ FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid biosynthesis pathway.
Probab=94.80 E-value=0.96 Score=37.67 Aligned_cols=86 Identities=10% Similarity=-0.070 Sum_probs=58.4
Q ss_pred cCHHHHHHHHHHHHHHHHHHcCCCCCCccchhhhhhcCeEEEeEeeeeeEccccCCCCEEEEEEEEEEeCCeEEEEEEEE
Q 017534 101 ATVETIANLLQEVGCNHAQSVGFSTDGFATTTTMRKLHLIWVTARMHIEIYKYPAWSDVVEIETWCQSEGRIGTRRDWIL 180 (370)
Q Consensus 101 v~~~~yl~~~qea~~~~~~~lG~~~~~~~~~~~l~~~gl~wVv~r~~Iey~r~p~~gD~V~I~Twv~~~~r~~~~R~f~I 180 (370)
+.-.-.+++|-+++..+....+-. ...+..+.+.-.+++|.+|+..||+|++++++...+......+.++
T Consensus 45 ~Pg~l~iE~~aQ~~~~~~~~~~~~----------~~~~~~~l~~~~~~kf~~pv~pgd~l~i~~~v~~~~~~~~~~~~~~ 114 (131)
T cd01288 45 MPGVLIIEALAQAAGILGLKSLED----------FEGKLVYFAGIDKARFRKPVVPGDQLILEVELLKLRRGIGKFKGKA 114 (131)
T ss_pred CCchHHHHHHHHHHHHHhhhcccc----------cCCcEEEEeeecccEEccccCCCCEEEEEEEEEEeeCCEEEEEEEE
Confidence 333445666666666544222110 1233455566688999999999999999999998765555555667
Q ss_pred EECCCCcEEEEEEEEEEE
Q 017534 181 KDYATGEVIGRATSKWVM 198 (370)
Q Consensus 181 ~d~~~Gevla~a~s~wV~ 198 (370)
+ .+|+++++|+.+.+.
T Consensus 115 ~--~~g~~v~~~~~~~~~ 130 (131)
T cd01288 115 Y--VDGKLVAEAELMFAI 130 (131)
T ss_pred E--ECCEEEEEEEEEEEE
Confidence 5 589999999887764
No 48
>PLN02647 acyl-CoA thioesterase
Probab=94.72 E-value=1 Score=46.44 Aligned_cols=115 Identities=8% Similarity=0.003 Sum_probs=80.7
Q ss_pred EEEEEEeeecCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCCCCccchhhhhhcCeEEEeEeeeeeEccccCCCCEEEEE
Q 017534 84 YKEKFIVRCYEVGINKTATVETIANLLQEVGCNHAQSVGFSTDGFATTTTMRKLHLIWVTARMHIEIYKYPAWSDVVEIE 163 (370)
Q Consensus 84 f~~~~~Vr~~D~D~~Ghv~~~~yl~~~qea~~~~~~~lG~~~~~~~~~~~l~~~gl~wVv~r~~Iey~r~p~~gD~V~I~ 163 (370)
-+..+.+...|.+.+|.+.=..++.|+.+++..-+.... .+-.-.+.=-.|+|++|...||.|.++
T Consensus 291 ~~~~~iv~P~d~N~~g~iFGG~LM~~~De~A~i~A~r~a--------------~~~~vt~svd~v~F~~PV~vGdil~l~ 356 (437)
T PLN02647 291 LENSLICQPQQRNIHGRIFGGFLMRRAFELAFSTAYAFA--------------GLRPYFLEVDHVDFLRPVDVGDFLRFK 356 (437)
T ss_pred eEEEEEeCccccCCCCcEeHHHHHHHHHHHHHHHHHHHc--------------CCceEEEEecceEecCccccCcEEEEE
Confidence 445677899999999999999999999998875554422 112223333569999999999999987
Q ss_pred EEEEEe-----CCeEEEEEEEEE--EC--CCCcEEEEEEEEEEEEeCC-CCceecCCHH
Q 017534 164 TWCQSE-----GRIGTRRDWILK--DY--ATGEVIGRATSKWVMMNQD-TRRLQKVSDD 212 (370)
Q Consensus 164 Twv~~~-----~r~~~~R~f~I~--d~--~~Gevla~a~s~wV~vD~~-trRp~rip~e 212 (370)
..+... ++.++..+-.+. +. .+++++.++..++|..|-. +++|+++|+-
T Consensus 357 A~V~yt~~~s~g~~~i~veV~v~v~~~~~~~~~~~n~~~fTfva~d~~~~g~p~~Vp~V 415 (437)
T PLN02647 357 SCVLYTELENSEQPLINVEVVAHVTRPELRSSEVSNTFYFTFTVRPEAAMKNGFKIRNV 415 (437)
T ss_pred EEEEEEeEEecCceEEEEEEEEEEEcCCCCcceEEEEEEEEEEEeccccCCCCccCCee
Confidence 655543 344444333322 31 3457788999999998873 5788877653
No 49
>PF13622 4HBT_3: Thioesterase-like superfamily; PDB: 2PIM_A 3RQB_A 3CJY_A 3RD7_A 3BBJ_B.
Probab=94.68 E-value=3.8 Score=38.32 Aligned_cols=59 Identities=19% Similarity=0.186 Sum_probs=48.2
Q ss_pred EEeEeeeeeEccccCCCCEEEEEEEEEEeCCeEEEEEEEEEECCCCcEEEEEEEEEEEEeCC
Q 017534 141 WVTARMHIEIYKYPAWSDVVEIETWCQSEGRIGTRRDWILKDYATGEVIGRATSKWVMMNQD 202 (370)
Q Consensus 141 wVv~r~~Iey~r~p~~gD~V~I~Twv~~~~r~~~~R~f~I~d~~~Gevla~a~s~wV~vD~~ 202 (370)
..+..++++|.++...+ .+++++...+.||.+..+.-++. ++|+++++|...+.--+..
T Consensus 34 ~~~~s~~~~fl~p~~~~-~~~~~v~~~r~Gr~~~~~~v~~~--q~~~~~~~a~~~f~~~~~~ 92 (255)
T PF13622_consen 34 FDPHSLHVYFLRPVPPG-PVEYRVEVLRDGRSFSTRQVELS--QDGKVVATATASFGRPEPG 92 (255)
T ss_dssp SEEEEEEEEESS--BSC-EEEEEEEEEEESSSEEEEEEEEE--ETTEEEEEEEEEEE--TTT
T ss_pred CceEEEEeEeccccccC-CEEEEEEEeeCCCcEEEEEEEEE--ECCcCEEEEEEEEccCcCC
Confidence 68899999999999999 99999999999999999988888 4889998888876655433
No 50
>cd03455 SAV4209 SAV4209 is a Streptomyces avermitilis protein with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The alpha- and gamma-proteobacterial members of this CD have, in addition to a hot dog fold, an N-terminal extension.
Probab=94.51 E-value=0.27 Score=41.15 Aligned_cols=55 Identities=5% Similarity=-0.043 Sum_probs=43.7
Q ss_pred EEeEeeeeeEccccCCCCEEEEEEEEEEeCCe-EEEEEEEEEECCCCcEEEEEEEEE
Q 017534 141 WVTARMHIEIYKYPAWSDVVEIETWCQSEGRI-GTRRDWILKDYATGEVIGRATSKW 196 (370)
Q Consensus 141 wVv~r~~Iey~r~p~~gD~V~I~Twv~~~~r~-~~~R~f~I~d~~~Gevla~a~s~w 196 (370)
..+.+++++|.+|...||+|+++.++.+.... ......++.| ++|++++++..+.
T Consensus 67 ~~~~~~~~rf~~pv~~Gdtl~~~~~v~~~~~~~~v~~~~~~~n-q~G~~v~~g~a~v 122 (123)
T cd03455 67 ARVKSFAFRLGAPLYAGDTLRFGGRVTAKRDDEVVTVELWARN-SEGDHVMAGTATV 122 (123)
T ss_pred ceEEEEEEEeeccccCCCEEEEEEEEEeeccCcEEEEEEEEEc-CCCCEEEeEEEEE
Confidence 34566799999999999999999999876432 4455667888 8999998888653
No 51
>PRK13691 (3R)-hydroxyacyl-ACP dehydratase subunit HadC; Provisional
Probab=94.41 E-value=0.51 Score=42.26 Aligned_cols=62 Identities=13% Similarity=-0.034 Sum_probs=47.9
Q ss_pred EeEeeeeeEccccCCCCEEEEEEEEEEeC----CeEEEEEEEEEECCCCcEEEEEEEEEEEEeCCCC
Q 017534 142 VTARMHIEIYKYPAWSDVVEIETWCQSEG----RIGTRRDWILKDYATGEVIGRATSKWVMMNQDTR 204 (370)
Q Consensus 142 Vv~r~~Iey~r~p~~gD~V~I~Twv~~~~----r~~~~R~f~I~d~~~Gevla~a~s~wV~vD~~tr 204 (370)
+-...+++|.+|...||+|++++++.+.. +-.......+.| ++|++++++..+++.-+-.+.
T Consensus 85 v~~~q~~~f~rPV~~GDtL~~~~~V~~~~~~~~~g~V~~~~~~~N-Q~Ge~V~~~~~~~~~~~~~~~ 150 (166)
T PRK13691 85 VQVDQRFVFHKPVLAGDKLWARMDIHSVDERFGADIVVTRNVCTN-DDGELVMEAYTTLMGQQGDNS 150 (166)
T ss_pred eeeeeEEEEeCCcCCCCEEEEEEEEEEEEEcCCCcEEEEEEEEEC-CCCCEEEEEEEEEEEecCCCc
Confidence 44557889999999999999999988752 223555667888 999999999988877654443
No 52
>PRK10694 acyl-CoA esterase; Provisional
Probab=94.35 E-value=0.68 Score=39.89 Aligned_cols=96 Identities=10% Similarity=0.005 Sum_probs=69.1
Q ss_pred eeeeeecccCcCCcccchhhHHHHHHHhCCcc--ccc--ccceEEE-EEEeccccCCCCEEEEEEEeeccCCCccccccc
Q 017534 252 LGLIPRRADLDMNQHVNNVTYIGWLLESMPQD--VID--THELQTI-TLDYRRECQQDDVVDSLTSAEPFEDAEPVSKLQ 326 (370)
Q Consensus 252 ~~~~Vr~sDiD~ngHVNN~~Y~~w~~~~~~~~--~~~--~~~l~~~-~i~Y~~e~~~gd~v~v~t~v~~~~~~~~~~~~~ 326 (370)
..+.+...|...+|-+.--..+.|+.++.... ... .....++ .|+|++|++.||.|.+..++...|+
T Consensus 14 ~~~~v~p~~~N~~g~lfGG~ll~~~D~~a~i~a~~~~~~~~vtv~vd~i~F~~Pv~~Gd~l~~~a~V~~~g~-------- 85 (133)
T PRK10694 14 LRTLAMPADTNANGDIFGGWLMSQMDIGGAILAKEIAHGRVVTVRVEGMTFLRPVAVGDVVCCYARCVKTGT-------- 85 (133)
T ss_pred EEEEcChhhcCCCCcEeHHHHHHHHHHHHHHHHHHHcCCceEEEEECceEECCCcccCcEEEEEEEEEEccC--------
Confidence 45678899999999999999999999873211 111 2345566 5699999999999999999999875
Q ss_pred CCCCCCcccCCCCCceEEEEEEEEC---CC--C--cEEEEEEEEEEecc
Q 017534 327 GTNGSPAITGDKEDNHQFLHLLRLS---GD--G--SEINRGRSVWRKKP 368 (370)
Q Consensus 327 ~~~g~~~~~~~~~~~~~~~h~l~~~---~d--G--~~ia~~~t~W~~~~ 368 (370)
+|+...+++... .+ | ..++.+.-+++..+
T Consensus 86 -------------sS~~v~v~v~~~~~~~~~~g~~~~~~~~~~tfVavd 121 (133)
T PRK10694 86 -------------TSISINIEVWVKKVASEPIGQRYKATEALFTYVAVD 121 (133)
T ss_pred -------------ceEEEEEEEEEeecccCCCCcEEEEEEEEEEEEEEC
Confidence 466767766531 11 2 23667777777654
No 53
>cd00493 FabA_FabZ FabA/Z, beta-hydroxyacyl-acyl carrier protein (ACP)-dehydratases: One of several distinct enzyme types of the dissociative, type II, fatty acid synthase system (found in bacteria and plants) required to complete successive cycles of fatty acid elongation. The third step of the elongation cycle, the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, is catalyzed by FabA or FabZ. FabA is bifunctional and catalyzes an additional isomerization reaction of trans-2-acyl-ACP to cis-3-acyl-ACP, an essential reaction to unsaturated fatty acid synthesis. FabZ is the primary dehydratase that participates in the elongation cycles of saturated as well as unsaturated fatty acid biosynthesis, whereas FabA is more active in the dehydration of beta-hydroxydecanoyl-ACP. The FabA structure is homodimeric with two independent active sites located at the dimer interface.
Probab=93.83 E-value=2.8 Score=34.70 Aligned_cols=86 Identities=10% Similarity=0.004 Sum_probs=62.4
Q ss_pred CCCcCHHHHHHHHHHHHHHHHHHcCCCCCCccchhhhhhcCeEEEeEeeeeeEccccCCCCEEEEEEEEEEeCCeEEEEE
Q 017534 98 NKTATVETIANLLQEVGCNHAQSVGFSTDGFATTTTMRKLHLIWVTARMHIEIYKYPAWSDVVEIETWCQSEGRIGTRRD 177 (370)
Q Consensus 98 ~Ghv~~~~yl~~~qea~~~~~~~lG~~~~~~~~~~~l~~~gl~wVv~r~~Iey~r~p~~gD~V~I~Twv~~~~r~~~~R~ 177 (370)
++.+--.-.++++-+++..++...+.... .....+..+.--+++|+++...||+++++.++...+......+
T Consensus 41 ~p~lPg~~~iE~~aQ~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~kf~~~v~pgd~l~i~~~i~~~~~~~~~~~ 112 (131)
T cd00493 41 DPVMPGVLGIEAMAQAAAALAGLLGLGKG--------NPPRLGYLAGVRKVKFRGPVLPGDTLTLEVELLKVRRGLGKFD 112 (131)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHhcccccc--------cCCcEEEEEEcceeEECCCcCCCCEEEEEEEEEEeeCCEEEEE
Confidence 45677788888998888888765543211 1223344445568999999999999999999998764445556
Q ss_pred EEEEECCCCcEEEEEE
Q 017534 178 WILKDYATGEVIGRAT 193 (370)
Q Consensus 178 f~I~d~~~Gevla~a~ 193 (370)
..++. +|++++++.
T Consensus 113 ~~~~~--~g~~v~~~~ 126 (131)
T cd00493 113 GRAYV--DGKLVAEAE 126 (131)
T ss_pred EEEEE--CCEEEEEEE
Confidence 67775 699999988
No 54
>PLN02864 enoyl-CoA hydratase
Probab=93.46 E-value=8.5 Score=37.90 Aligned_cols=61 Identities=16% Similarity=0.082 Sum_probs=47.6
Q ss_pred EEeEeeeeeEccccCCCCEEEEEEEEEEeC---C-eEEEEEEEEEECCCCcEEEEEEEEEEEEeC
Q 017534 141 WVTARMHIEIYKYPAWSDVVEIETWCQSEG---R-IGTRRDWILKDYATGEVIGRATSKWVMMNQ 201 (370)
Q Consensus 141 wVv~r~~Iey~r~p~~gD~V~I~Twv~~~~---r-~~~~R~f~I~d~~~Gevla~a~s~wV~vD~ 201 (370)
.|=.+..|+++||+..++.+++++++..+. + .....+..+.+..+|+++++..++.++-..
T Consensus 94 lVHgeq~i~~~rPlp~~~~l~~~~~v~~v~dkG~ga~v~~~~~~~d~~~Ge~v~t~~st~~~Rg~ 158 (310)
T PLN02864 94 LLHGQQYIEIYKPIPSSASVRNKVSIAGLHDKGKAAILELETLSYEKDSGELLCMNRSTIFLRGA 158 (310)
T ss_pred eeeccceEEEECCCCCCCEEEEEEEEEEEEeCCCcEEEEEEEEEEeCCCCcEEEEEEEEEEEeCC
Confidence 356678899999999999999999998862 2 224556677774589999999988887653
No 55
>cd03447 FAS_MaoC FAS_MaoC, the MaoC-like hot dog fold of the fatty acid synthase, beta subunit. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and 17-beta-hydroxysteriod dehydrogenase (HSD).
Probab=93.45 E-value=0.72 Score=39.19 Aligned_cols=53 Identities=9% Similarity=-0.031 Sum_probs=42.1
Q ss_pred EeEeeeeeEccccCCCCEEEEEEEEEEeCCeEEEEEEEEEECCC-CcEEEEEEEE
Q 017534 142 VTARMHIEIYKYPAWSDVVEIETWCQSEGRIGTRRDWILKDYAT-GEVIGRATSK 195 (370)
Q Consensus 142 Vv~r~~Iey~r~p~~gD~V~I~Twv~~~~r~~~~R~f~I~d~~~-Gevla~a~s~ 195 (370)
.+.+++++|.+|...||+|+++.|+.+...-....++.+++ ++ |+++..+..+
T Consensus 69 ~~~~~~~rf~~PV~~gdtl~~~~~v~~~~~~~~~~~~~~~n-q~~g~~V~~g~~~ 122 (126)
T cd03447 69 RVRSFTASFVGMVLPNDELEVRLEHVGMVDGRKVIKVEARN-EETGELVLRGEAE 122 (126)
T ss_pred eEEEEEEEEcccCcCCCEEEEEEEEEEEeCCeEEEEEEEEE-CCCCCEEEEEEEE
Confidence 34557999999999999999999999865444556778888 66 8988887754
No 56
>PRK13692 (3R)-hydroxyacyl-ACP dehydratase subunit HadA; Provisional
Probab=93.38 E-value=1 Score=40.01 Aligned_cols=60 Identities=10% Similarity=0.042 Sum_probs=47.8
Q ss_pred EeeeeeEccccCCCCEEEEEEEEEEeC----CeEEEEEEEEEECCCCcEEEEEEEEEEEEeCCCC
Q 017534 144 ARMHIEIYKYPAWSDVVEIETWCQSEG----RIGTRRDWILKDYATGEVIGRATSKWVMMNQDTR 204 (370)
Q Consensus 144 ~r~~Iey~r~p~~gD~V~I~Twv~~~~----r~~~~R~f~I~d~~~Gevla~a~s~wV~vD~~tr 204 (370)
...+++|.+|...||+|+++.++.+.. +-....+..++| ++|++++++.++.+.-..+..
T Consensus 87 ~~q~~~f~~PV~~GDtL~~~~eV~~~~~~~~~giv~~~~~v~N-q~Ge~V~~~~~~~~~r~~~~~ 150 (159)
T PRK13692 87 VDQVLKFEKPIVAGDKLYCDVYVDSVREAHGTQIIVTKNIVTN-EEGDVVQETYTTLAGRAGEDG 150 (159)
T ss_pred eeeEEEEeCCccCCCEEEEEEEEEEEEEcCCceEEEEEEEEEc-CCCCEEEEEEEEEEEecCCcC
Confidence 447899999999999999999987542 234555667888 899999999999988766543
No 57
>cd03441 R_hydratase_like (R)-hydratase [(R)-specific enoyl-CoA hydratase]. Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. The structure of the monomer includes a five-strand antiparallel beta-sheet wrapped around a central alpha helix, referred to as a hot dog fold. The active site lies within a substrate-binding tunnel formed by the homodimer. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit.
Probab=93.35 E-value=0.77 Score=37.76 Aligned_cols=56 Identities=9% Similarity=-0.099 Sum_probs=44.4
Q ss_pred eEEEeEeeeeeEccccCCCCEEEEEEEEEEeCC----eEEEEEEEEEECCCCcEEEEEEEE
Q 017534 139 LIWVTARMHIEIYKYPAWSDVVEIETWCQSEGR----IGTRRDWILKDYATGEVIGRATSK 195 (370)
Q Consensus 139 l~wVv~r~~Iey~r~p~~gD~V~I~Twv~~~~r----~~~~R~f~I~d~~~Gevla~a~s~ 195 (370)
..+++...+++|.+|...||+|+++.++..... -.........| ++|+++..|..+
T Consensus 66 ~~~~~~~~~~~f~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n-~~g~~v~~g~~~ 125 (127)
T cd03441 66 DGANLGSQSVRFLAPVFPGDTLRVEVEVLGKRPSKGRGVVTVRTEARN-QGGEVVLSGEAT 125 (127)
T ss_pred ccceeEEeEEEEeCCcCCCCEEEEEEEEEEeeccCCCcEEEEEEEEEe-CCCCEEEEEEEE
Confidence 456788999999999999999999999998642 23455567778 788988876653
No 58
>cd03454 YdeM YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function. YdeM has sequence similarity to the hot-dog fold of (R)-specific enoyl-CoA hydratase. Other enzymes with this fold include the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=93.31 E-value=0.45 Score=40.55 Aligned_cols=51 Identities=12% Similarity=-0.050 Sum_probs=41.6
Q ss_pred eeeeEccccCCCCEEEEEEEEEEeC-------CeEEEEEEEEEECCCCcEEEEEEEEEE
Q 017534 146 MHIEIYKYPAWSDVVEIETWCQSEG-------RIGTRRDWILKDYATGEVIGRATSKWV 197 (370)
Q Consensus 146 ~~Iey~r~p~~gD~V~I~Twv~~~~-------r~~~~R~f~I~d~~~Gevla~a~s~wV 197 (370)
.+++|.+|...||+|+++.++.+.. +-.......+.| ++|++++++..+.+
T Consensus 81 ~~~~f~~pv~~Gd~l~~~~~v~~~~~~~~~~~~~~v~~~~~~~n-q~g~~v~~~~~~~~ 138 (140)
T cd03454 81 DELRWPRPVRPGDTLSVEVEVLDKRPSRSRPDRGIVTLRSETLN-QRGEVVLTFEATVL 138 (140)
T ss_pred eeeEeCCCCCCCCEEEEEEEEEEEeecCCCCCCeEEEEEEEEEc-CCCCEEEEEEehhe
Confidence 4899999999999999999998753 224556677888 89999999987654
No 59
>TIGR02447 yiiD_Cterm thioesterase domain, putative. This family consists of a broadly distributed uncharacterized domain found often as a standalone protein. The member from Shewanella oneidensis, PDB|1T82_A (Forouhar, et al., unpublished) is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an Acetyltransf_1 domain (PFAM model pfam00583). The function of this protein is unknown.
Probab=93.21 E-value=3.6 Score=35.42 Aligned_cols=95 Identities=15% Similarity=0.108 Sum_probs=67.9
Q ss_pred EEEEeeecCCCCCCCcCHHHHHHHHHHHHHHHH----HHcCCCCCCccchhhhhhcCeEEEeEeeeeeEccccCCCCEEE
Q 017534 86 EKFIVRCYEVGINKTATVETIANLLQEVGCNHA----QSVGFSTDGFATTTTMRKLHLIWVTARMHIEIYKYPAWSDVVE 161 (370)
Q Consensus 86 ~~~~Vr~~D~D~~Ghv~~~~yl~~~qea~~~~~----~~lG~~~~~~~~~~~l~~~gl~wVv~r~~Iey~r~p~~gD~V~ 161 (370)
-+..+.. ..+..|.++=..++.++..+.+..+ ...+. +..-|+...+|+|.+|..- + +.
T Consensus 26 v~~pl~~-n~N~~G~~hGG~l~tlad~a~~~~~~~~~~~~~~--------------~~~~vt~~~~i~yl~P~~~-~-~~ 88 (138)
T TIGR02447 26 LSAPLAA-NINHHGTMFGGSLYTLATLSGWGLLWLRLQELGI--------------DGDIVIADSHIRYLAPVTG-D-PV 88 (138)
T ss_pred EEeECCC-CcCCCCceehhHHHHHHHHHHHHHHHHHHHHhCC--------------CCcEEEEEeeeEEcCCcCC-C-eE
Confidence 4455666 4899999999999999976654322 22222 2345888999999999863 4 55
Q ss_pred EEEEE-------------EEeCCeEEEEEEEEEECCCCcEEEEEEEEEEEE
Q 017534 162 IETWC-------------QSEGRIGTRRDWILKDYATGEVIGRATSKWVMM 199 (370)
Q Consensus 162 I~Twv-------------~~~~r~~~~R~f~I~d~~~Gevla~a~s~wV~v 199 (370)
++..+ ...+|.....+-+|++ +|+++|++..+++.+
T Consensus 89 a~~~~~~~~~~~~~~~~l~~~gr~~~~~~~~v~~--~~~lvA~~~g~~~~~ 137 (138)
T TIGR02447 89 ANCEAPDLESWEAFLATLQRGGKARVKLEAQISS--DGKLAATFSGEYVAL 137 (138)
T ss_pred EEEEcCCHHHHHHHHHHHHhCCceEEEEEEEEEE--CCEEEEEEEEEEEEe
Confidence 55554 3456777667778885 789999999999875
No 60
>cd03446 MaoC_like MoaC_like Similar to the MaoC (monoamine oxidase C) dehydratase regulatory protein but without the N-terminal PutA domain. This protein family has a hot-dog fold similar to that of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=92.93 E-value=0.62 Score=39.48 Aligned_cols=51 Identities=12% Similarity=0.074 Sum_probs=40.6
Q ss_pred eeeeEccccCCCCEEEEEEEEEEeCC------eEEEEEEEEEECCCCcEEEEEEEEEE
Q 017534 146 MHIEIYKYPAWSDVVEIETWCQSEGR------IGTRRDWILKDYATGEVIGRATSKWV 197 (370)
Q Consensus 146 ~~Iey~r~p~~gD~V~I~Twv~~~~r------~~~~R~f~I~d~~~Gevla~a~s~wV 197 (370)
.+++|.+|...||+|.++.++.+... -.......++| ++|++++++..+.+
T Consensus 83 ~~~~f~~pv~~GD~l~~~~~v~~~~~~~~~~~~~v~~~~~~~n-q~g~~v~~~~~~~l 139 (140)
T cd03446 83 DNLRFLNPVFIGDTIRAEAEVVEKEEKDGEDAGVVTRRIEVVN-QRGEVVQSGEMSLL 139 (140)
T ss_pred ceEEEcCCCCCCCEEEEEEEEEEecccCCCCceEEEEEEEEEc-CCCCEEEEEEEeee
Confidence 48999999999999999999987531 23444566778 89999999988765
No 61
>cd03453 SAV4209_like SAV4209_like. Similar in sequence to the Streptomyces avermitilis SAV4209 protein, with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=92.77 E-value=0.79 Score=38.56 Aligned_cols=52 Identities=8% Similarity=-0.079 Sum_probs=40.9
Q ss_pred eEeeeeeEccccCCCCEEEEEEEEEEeC----CeEEEEEEEEEECCCCcEEEEEEEE
Q 017534 143 TARMHIEIYKYPAWSDVVEIETWCQSEG----RIGTRRDWILKDYATGEVIGRATSK 195 (370)
Q Consensus 143 v~r~~Iey~r~p~~gD~V~I~Twv~~~~----r~~~~R~f~I~d~~~Gevla~a~s~ 195 (370)
+.++.++|.+|...||+|+++.++.+.. +-....+..+.| ++|+++..+..+
T Consensus 70 i~~~~~rf~~Pv~~Gdtl~~~~~v~~~~~~~~~~~v~~~~~~~n-q~g~~v~~g~a~ 125 (127)
T cd03453 70 VVSFGVRFTKPVPVPDTLTCTGIVVEKTVADGEDALTVTVDATD-QAGGKKVLGRAI 125 (127)
T ss_pred eEEEEEEECCcCcCCCEEEEEEEEEEEEecCCCcEEEEEEEEEE-cCCCEEEEEEEE
Confidence 3577899999999999999999987642 234455677888 899998887754
No 62
>PRK00006 fabZ (3R)-hydroxymyristoyl-ACP dehydratase; Reviewed
Probab=92.53 E-value=6.2 Score=33.86 Aligned_cols=59 Identities=10% Similarity=-0.002 Sum_probs=45.6
Q ss_pred EEEeEe-eeeeEccccCCCCEEEEEEEEEEeCCeEEEEEEEEEECCCCcEEEEEEEEEEEEe
Q 017534 140 IWVTAR-MHIEIYKYPAWSDVVEIETWCQSEGRIGTRRDWILKDYATGEVIGRATSKWVMMN 200 (370)
Q Consensus 140 ~wVv~r-~~Iey~r~p~~gD~V~I~Twv~~~~r~~~~R~f~I~d~~~Gevla~a~s~wV~vD 200 (370)
.+++.. -+++|++|...||+|+++.++...++.....+.+++ .+|+++++|..+.++-|
T Consensus 87 ~~~l~gi~~~kF~~pv~pGd~l~i~~~i~~~~~~~v~~~~~~~--~~g~~v~~~~~~~~~~~ 146 (147)
T PRK00006 87 LVYFAGIDKARFKRPVVPGDQLILEVELLKQRRGIWKFKGVAT--VDGKLVAEAELMFAIRD 146 (147)
T ss_pred EEEEeeeeEEEEccccCCCCEEEEEEEEEEeeCCEEEEEEEEE--ECCEEEEEEEEEEEEEc
Confidence 344444 479999999999999999999887654555556665 48999999999887644
No 63
>cd03451 FkbR2 FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes. FkbR2 has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The function of FkbR2 is unknown.
Probab=92.23 E-value=0.77 Score=39.22 Aligned_cols=52 Identities=10% Similarity=-0.102 Sum_probs=41.4
Q ss_pred eeeeEccccCCCCEEEEEEEEEEeCC-------eEEEEEEEEEECCCCcEEEEEEEEEEE
Q 017534 146 MHIEIYKYPAWSDVVEIETWCQSEGR-------IGTRRDWILKDYATGEVIGRATSKWVM 198 (370)
Q Consensus 146 ~~Iey~r~p~~gD~V~I~Twv~~~~r-------~~~~R~f~I~d~~~Gevla~a~s~wV~ 198 (370)
.+++|.+|...||+|+++.++.+... -.......+.+ ++|++++++..+.++
T Consensus 84 ~~~~f~~pv~~GDtl~~~~~v~~~~~~~~~~~~~~v~~~~~~~n-q~g~~V~~~~~~~~~ 142 (146)
T cd03451 84 DEVRFPAPVFHGDTLYAESEVLSKRESKSRPDAGIVTVRTVGYN-QDGEPVLSFERTALV 142 (146)
T ss_pred cEEEecCCCCCCCEEEEEEEEEEEecCCCCCCCeEEEEEEEEEC-CCCCEEEEEEehhEE
Confidence 48999999999999999999987532 24445566777 889999999987654
No 64
>PRK11688 hypothetical protein; Provisional
Probab=92.13 E-value=2 Score=37.56 Aligned_cols=92 Identities=10% Similarity=0.053 Sum_probs=64.4
Q ss_pred eeeeeeecccCc--CCcccchhhHHHHHHHhCCccccc-------------------ccceEEEEEEeccccCCCCEEEE
Q 017534 251 RLGLIPRRADLD--MNQHVNNVTYIGWLLESMPQDVID-------------------THELQTITLDYRRECQQDDVVDS 309 (370)
Q Consensus 251 ~~~~~Vr~sDiD--~ngHVNN~~Y~~w~~~~~~~~~~~-------------------~~~l~~~~i~Y~~e~~~gd~v~v 309 (370)
...++++-..+. ..|.++=......++.+....... ...=.+++++|.+|+. |+.|..
T Consensus 40 ~~~l~~~~~~~~n~~~G~vHGG~i~tl~D~a~g~a~~~~~~~~~~~~~~~~~~~~~~~~vTi~l~i~fl~p~~-g~~l~a 118 (154)
T PRK11688 40 ELSFKMQPELVGNIAQSILHGGVIASVLDVAGGLVCVGGILARHEDISEEELRQRLSRLGTIDLRVDYLRPGR-GERFTA 118 (154)
T ss_pred EEEeeCCHHHcCCCCcCeeeHHHHHHHHHHHHHHHHHhhcccccccccccccccccccceEEEEEEEeeccCC-CCeEEE
Confidence 456677777775 468888888888887775322110 1123589999999996 999999
Q ss_pred EEEeeccCCCcccccccCCCCCCcccCCCCCceEEEEEEEECCCCcEEEEEEEEEE
Q 017534 310 LTSAEPFEDAEPVSKLQGTNGSPAITGDKEDNHQFLHLLRLSGDGSEINRGRSVWR 365 (370)
Q Consensus 310 ~t~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~l~~~~dG~~ia~~~t~W~ 365 (370)
..++.+.|. +..+..--...++|+++|+++..|.
T Consensus 119 ~a~v~~~g~----------------------r~~~~~~~i~~~~g~lvA~a~~t~~ 152 (154)
T PRK11688 119 TSSVLRAGN----------------------KVAVARMELHNEQGVHIASGTATYL 152 (154)
T ss_pred EEEEEEccC----------------------CEEEEEEEEECCCCCEEEEEEEEEE
Confidence 999988663 3333333224568999999999885
No 65
>TIGR01750 fabZ beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ. This enzyme, FabZ, shows overlapping substrate specificity with FabA with regard to chain length in fatty acid biosynthesis. FabZ works preferentially on shorter chains and is often designated (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase, although its actual specificity is broader. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains.
Probab=92.07 E-value=4.2 Score=34.58 Aligned_cols=87 Identities=13% Similarity=-0.042 Sum_probs=56.8
Q ss_pred CcCHHHHHHHHHHHHHHHHHHcCCCCCCccchhhhhhcCeEEEeEe-eeeeEccccCCCCEEEEEEEEEEeCCeEEEEEE
Q 017534 100 TATVETIANLLQEVGCNHAQSVGFSTDGFATTTTMRKLHLIWVTAR-MHIEIYKYPAWSDVVEIETWCQSEGRIGTRRDW 178 (370)
Q Consensus 100 hv~~~~yl~~~qea~~~~~~~lG~~~~~~~~~~~l~~~gl~wVv~r-~~Iey~r~p~~gD~V~I~Twv~~~~r~~~~R~f 178 (370)
.+--.-++++|-+++..++ |.... .....+...++.. -+++|.++...||+|++..++.....-....+.
T Consensus 52 v~Pg~l~iE~~aQ~~~~~~---~~~~~------~~~~~~~~~~l~~~~~~kF~~~v~pGd~l~i~~~i~~~~~~~~~~~~ 122 (140)
T TIGR01750 52 IMPGVLIVEALAQAGGVLA---ILSLG------GEIGKGKLVYFAGIDKAKFRRPVVPGDQLILHAEFLKKRRKIGKFKG 122 (140)
T ss_pred cChHHHHHHHHHHHHHHHh---ecccc------ccCCCCcEEEEeecceeEECCccCCCCEEEEEEEEEEccCCEEEEEE
Confidence 3445557777777666443 21111 0011222344555 589999999999999999998876544444556
Q ss_pred EEEECCCCcEEEEEEEEEE
Q 017534 179 ILKDYATGEVIGRATSKWV 197 (370)
Q Consensus 179 ~I~d~~~Gevla~a~s~wV 197 (370)
.++ .+|+++++|..+.+
T Consensus 123 ~~~--~~g~~va~~~~~~~ 139 (140)
T TIGR01750 123 EAT--VDGKVVAEAEITFA 139 (140)
T ss_pred EEE--ECCEEEEEEEEEEE
Confidence 665 58999999988764
No 66
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=91.97 E-value=1.7 Score=39.55 Aligned_cols=58 Identities=9% Similarity=-0.118 Sum_probs=45.3
Q ss_pred eEEEeEeeeeeEccccCCCCEEEEEEEEEEeCCeEEEEEEEEEECCCCcEEEEEEEEEEE
Q 017534 139 LIWVTARMHIEIYKYPAWSDVVEIETWCQSEGRIGTRRDWILKDYATGEVIGRATSKWVM 198 (370)
Q Consensus 139 l~wVv~r~~Iey~r~p~~gD~V~I~Twv~~~~r~~~~R~f~I~d~~~Gevla~a~s~wV~ 198 (370)
...+....+++|.+|...||+|.++.++.+.++........++ .+|+++++|..+.+.
T Consensus 124 ~~~~~~i~~irF~kPV~pGD~L~~ea~v~~~~~~~~~v~~~~~--v~g~~V~ege~~~~~ 181 (185)
T PRK04424 124 ELALTGVANIRFKRPVKLGERVVAKAEVVRKKGNKYIVEVKSY--VGDELVFRGKFIMYR 181 (185)
T ss_pred cEEEEEeeeEEEccCCCCCCEEEEEEEEEEccCCEEEEEEEEE--ECCEEEEEEEEEEEE
Confidence 3355666799999999999999999999987654444444555 579999999988765
No 67
>KOG4366 consensus Predicted thioesterase [General function prediction only]
Probab=91.82 E-value=0.017 Score=52.26 Aligned_cols=87 Identities=16% Similarity=0.070 Sum_probs=60.7
Q ss_pred cccCcCCc-ccchhhHHHHHHHhCCc------------ccccccceEEEEEEeccccCCCCEEEEEEEeeccCCCccccc
Q 017534 258 RADLDMNQ-HVNNVTYIGWLLESMPQ------------DVIDTHELQTITLDYRRECQQDDVVDSLTSAEPFEDAEPVSK 324 (370)
Q Consensus 258 ~sDiD~ng-HVNN~~Y~~w~~~~~~~------------~~~~~~~l~~~~i~Y~~e~~~gd~v~v~t~v~~~~~~~~~~~ 324 (370)
-+|+|..- |+||++|++=+.=+... +..-..+...-.+.|++++++-+...|.+++.-+.+
T Consensus 59 s~dlDtll~HmnNArYfrElDfAR~~~~~r~~l~~~lr~~~~~~v~~As~~ryrr~Irpfh~y~v~sRiI~WDe------ 132 (213)
T KOG4366|consen 59 STDLDTLLSHMNNARYFRELDFARVNFYCRTGLYLMLRSKRGPYVQGASVFRYRREIRPFHPYSVSSRIICWDE------ 132 (213)
T ss_pred cchHHHHHHHhhhhHHHHHhhHHHHHHHHHHhHHHHHHhcCCCeeechhhhhhhhhcCCCCccceeeEEEEEch------
Confidence 48999988 99999999765433211 000123445566779999999999999998877632
Q ss_pred ccCCCCCCcccCCCCCceEEEEEEEECCCCcEEEEEEEEEE
Q 017534 325 LQGTNGSPAITGDKEDNHQFLHLLRLSGDGSEINRGRSVWR 365 (370)
Q Consensus 325 ~~~~~g~~~~~~~~~~~~~~~h~l~~~~dG~~ia~~~t~W~ 365 (370)
..+-..|.+.+..||-+++-+.+.-+
T Consensus 133 ---------------kaiyle~rFv~~sd~fvcala~~kq~ 158 (213)
T KOG4366|consen 133 ---------------KAIYLESRFVILSDGFVCALALTKQV 158 (213)
T ss_pred ---------------hhhhhhhheeeccCceEeehHHHHHH
Confidence 34455677767788998887766543
No 68
>PF13452 MaoC_dehydrat_N: N-terminal half of MaoC dehydratase; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1S9C_K 3OML_A 3KHP_A.
Probab=90.16 E-value=1.3 Score=37.14 Aligned_cols=52 Identities=13% Similarity=0.082 Sum_probs=37.8
Q ss_pred eEEEeEeeeeeEccccCCCCEEEEEEEEEEeC-C------eEEEEEEEEEECCCCcEEEE
Q 017534 139 LIWVTARMHIEIYKYPAWSDVVEIETWCQSEG-R------IGTRRDWILKDYATGEVIGR 191 (370)
Q Consensus 139 l~wVv~r~~Iey~r~p~~gD~V~I~Twv~~~~-r------~~~~R~f~I~d~~~Gevla~ 191 (370)
..-+-...+++|++|+..||+|++++.+..+. | .....+.+++| ++|+++++
T Consensus 73 ~~~vh~~~~~~~h~Pl~~Gd~l~~~~~v~~v~~k~g~G~~~~v~~~~~~~~-~~Ge~v~t 131 (132)
T PF13452_consen 73 TRLVHGEQDIEFHRPLRPGDTLTATSRVTDVYDKRGAGKGVFVTVETEYTD-QDGELVAT 131 (132)
T ss_dssp GGEEEEEEEEEESS--BSSEEEEEEEEEEEEEEES-TTSEEEEEEEEEEE--CTTEEEEE
T ss_pred hhEEecCcEEEEeCCCCCCCEEEEEEEEEEEEEecCCCCEEEEEEEEEEEC-CCCCEEEe
Confidence 34566789999999999999999999988842 1 22345567888 99999976
No 69
>cd03449 R_hydratase (R)-hydratase [(R)-specific enoyl-CoA hydratase] catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. (R)-hydratase contains a hot-dog fold similar to those of thioesterase II, and beta-hydroxydecanoyl-ACP dehydratase, MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit. The active site lies within a substrate-binding tunnel formed by the (R)-hydratase homodimer. A subset of the bacterial (R)-hydratases contain a C-terminal phosphotransacetylase (PTA) domain.
Probab=90.15 E-value=2.3 Score=35.07 Aligned_cols=55 Identities=13% Similarity=0.176 Sum_probs=40.5
Q ss_pred ceEEEEEEeccccCCCCEEEEEEEeeccCCCcccccccCCCCCCcccCCCCCceEEEEEEEECCCCcEEEEEEEE
Q 017534 289 ELQTITLDYRRECQQDDVVDSLTSAEPFEDAEPVSKLQGTNGSPAITGDKEDNHQFLHLLRLSGDGSEINRGRSV 363 (370)
Q Consensus 289 ~l~~~~i~Y~~e~~~gd~v~v~t~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~l~~~~dG~~ia~~~t~ 363 (370)
.....++.|++|++.||.|.+..++...... ...+.+...+ ..++|+++++|+.+
T Consensus 71 ~~~~~~~~f~~Pv~~gd~l~~~~~v~~~~~~-------------------~~~v~~~~~~-~~~~g~~v~~g~~~ 125 (128)
T cd03449 71 IYLSQSLRFLRPVFIGDTVTATVTVTEKRED-------------------KKRVTLETVC-TNQNGEVVIEGEAV 125 (128)
T ss_pred EEEEEEEEECCCccCCCEEEEEEEEEEEecC-------------------CCEEEEEEEE-EeCCCCEEEEEEEE
Confidence 3467899999999999999999988764210 1244556666 34579999998865
No 70
>cd03452 MaoC_C MaoC_C The C-terminal hot dog fold of the MaoC (monoamine oxidase C) dehydratase regulatory protein. Orthologs of MaoC include PaaZ [Escherichia coli] and PaaN [Pseudomonas putida], which are putative ring-opening enzymes involved in phenylacetic acid degradation. The C-terminal domain of MaoC has sequence similarity to (R)-specific enoyl-CoA hydratase,Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. MaoC also has an N-terminal PutA domain like that found in the E. coli PutA proline dehydrogenase and other members of the aldehyde dehydrogenase family.
Probab=89.79 E-value=1.9 Score=37.19 Aligned_cols=52 Identities=12% Similarity=0.115 Sum_probs=41.5
Q ss_pred eeeeEccccCCCCEEEEEEEEEEeC--C----eEEEEEEEEEECCCCcEEEEEEEEEEE
Q 017534 146 MHIEIYKYPAWSDVVEIETWCQSEG--R----IGTRRDWILKDYATGEVIGRATSKWVM 198 (370)
Q Consensus 146 ~~Iey~r~p~~gD~V~I~Twv~~~~--r----~~~~R~f~I~d~~~Gevla~a~s~wV~ 198 (370)
.+++|.+|...||+|+++..+.... + -.......+.| ++|++++++....++
T Consensus 81 ~~~rf~~PV~~GDtl~~~~~V~~~~~~~~~~~~~v~~~~~~~n-q~g~~V~~~~~~~~~ 138 (142)
T cd03452 81 ENLRFLEPVYPGDTIQVRLTCKRKIPRDGQDYGVVRWDAEVTN-QNGELVASYDILTLV 138 (142)
T ss_pred ceEEECCCCCCCCEEEEEEEEEEEeecCCCCcEEEEEEEEEEe-cCCCEEEEEEehHee
Confidence 4899999999999999999998863 1 23455667788 899999998866554
No 71
>PRK08190 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated
Probab=89.38 E-value=2.6 Score=43.88 Aligned_cols=65 Identities=12% Similarity=0.097 Sum_probs=49.4
Q ss_pred EEeEeeeeeEccccCCCCEEEEEEEEEEe--CCeEEEEEEEEEECCCCcEEEEEEEEEEEEeCCCCce
Q 017534 141 WVTARMHIEIYKYPAWSDVVEIETWCQSE--GRIGTRRDWILKDYATGEVIGRATSKWVMMNQDTRRL 206 (370)
Q Consensus 141 wVv~r~~Iey~r~p~~gD~V~I~Twv~~~--~r~~~~R~f~I~d~~~Gevla~a~s~wV~vD~~trRp 206 (370)
.+....+++|.+|...||+|+++.++.+. ++........++| ++|++++++..++++-...=.+|
T Consensus 83 ~~~~~~~~rF~~PV~~GDtl~~~~~V~~~~~~~~~v~~~~~~~n-q~G~~V~~g~~~~l~~~~~~~~~ 149 (466)
T PRK08190 83 TIYLGQSLRFRRPVRIGDTLTVTVTVREKDPEKRIVVLDCRCTN-QDGEVVITGTAEVIAPTEKVRRP 149 (466)
T ss_pred eEEEEEEEEEeCCcCCCCEEEEEEEEEEEECCCCEEEEEEEEEe-CCCCEEEEEEEEeeccccccccc
Confidence 45567899999999999999999999874 3334445567788 89999999998887655444434
No 72
>KOG4366 consensus Predicted thioesterase [General function prediction only]
Probab=88.48 E-value=0.07 Score=48.41 Aligned_cols=103 Identities=11% Similarity=-0.005 Sum_probs=83.0
Q ss_pred EeeecCCCCCC-CcCHHHHHHHHHHHHHHHHHHcCCCCCCccchhhhhhcCeEEEeEeeeeeEccccCCCCEEEEEEEEE
Q 017534 89 IVRCYEVGINK-TATVETIANLLQEVGCNHAQSVGFSTDGFATTTTMRKLHLIWVTARMHIEIYKYPAWSDVVEIETWCQ 167 (370)
Q Consensus 89 ~Vr~~D~D~~G-hv~~~~yl~~~qea~~~~~~~lG~~~~~~~~~~~l~~~gl~wVv~r~~Iey~r~p~~gD~V~I~Twv~ 167 (370)
..-..|+|..- |+||+.|++=++-||.+|+...|.-. .+...+..-|..-..+.|.|.++.-+.-.|.|.+.
T Consensus 56 ~cls~dlDtll~HmnNArYfrElDfAR~~~~~r~~l~~-------~lr~~~~~~v~~As~~ryrr~Irpfh~y~v~sRiI 128 (213)
T KOG4366|consen 56 LCLSTDLDTLLSHMNNARYFRELDFARVNFYCRTGLYL-------MLRSKRGPYVQGASVFRYRREIRPFHPYSVSSRII 128 (213)
T ss_pred eeecchHHHHHHHhhhhHHHHHhhHHHHHHHHHHhHHH-------HHHhcCCCeeechhhhhhhhhcCCCCccceeeEEE
Confidence 34456777766 99999999999999999999888631 25666777777777888999999999999999988
Q ss_pred EeC--CeEEEEEEEEEECCCCcEEEEEEEEEEEEe
Q 017534 168 SEG--RIGTRRDWILKDYATGEVIGRATSKWVMMN 200 (370)
Q Consensus 168 ~~~--r~~~~R~f~I~d~~~Gevla~a~s~wV~vD 200 (370)
.-. .++..-.|.+. .||=+++-+.+..++.|
T Consensus 129 ~WDekaiyle~rFv~~--sd~fvcala~~kq~l~d 161 (213)
T KOG4366|consen 129 CWDEKAIYLESRFVIL--SDGFVCALALTKQVLKD 161 (213)
T ss_pred EEchhhhhhhhheeec--cCceEeehHHHHHHHhc
Confidence 854 44454556665 68999999999999999
No 73
>cd03445 Thioesterase_II_repeat2 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=88.35 E-value=3.6 Score=33.07 Aligned_cols=53 Identities=23% Similarity=0.160 Sum_probs=46.7
Q ss_pred EeEeeeeeEccccCCCCEEEEEEEEEEeCCeEEEEEEEEEECCCCcEEEEEEEEE
Q 017534 142 VTARMHIEIYKYPAWSDVVEIETWCQSEGRIGTRRDWILKDYATGEVIGRATSKW 196 (370)
Q Consensus 142 Vv~r~~Iey~r~p~~gD~V~I~Twv~~~~r~~~~R~f~I~d~~~Gevla~a~s~w 196 (370)
.+..+++.|.+|+..+..|++++.+...||.+..+.-..+ ++|+++..+...+
T Consensus 40 ~~~s~~~~Fl~p~~~~~pv~~~v~~lr~GRs~~~~~V~~~--Q~g~~~~~a~~sf 92 (94)
T cd03445 40 VPHSLHSYFLRPGDPDQPIEYEVERLRDGRSFATRRVRAV--QNGKVIFTATASF 92 (94)
T ss_pred CeEEEEEEecCCCCCCCCEEEEEEEEECCCcEEEEEEEEE--ECCEEEEEEEEEE
Confidence 4678999999999999999999999999999999888887 5799998887765
No 74
>cd03455 SAV4209 SAV4209 is a Streptomyces avermitilis protein with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The alpha- and gamma-proteobacterial members of this CD have, in addition to a hot dog fold, an N-terminal extension.
Probab=87.18 E-value=5.8 Score=32.94 Aligned_cols=55 Identities=7% Similarity=0.071 Sum_probs=40.4
Q ss_pred cceEEEEEEeccccCCCCEEEEEEEeeccCCCcccccccCCCCCCcccCCCCCceEEEEEEEECCCCcEEEEEEEE
Q 017534 288 HELQTITLDYRRECQQDDVVDSLTSAEPFEDAEPVSKLQGTNGSPAITGDKEDNHQFLHLLRLSGDGSEINRGRSV 363 (370)
Q Consensus 288 ~~l~~~~i~Y~~e~~~gd~v~v~t~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~l~~~~dG~~ia~~~t~ 363 (370)
..+.++++.|++|++.||+|.+..++..... + .-..+...+ .+.+|..+..|+.+
T Consensus 67 ~~~~~~~~rf~~pv~~Gdtl~~~~~v~~~~~-----------~---------~~v~~~~~~-~nq~G~~v~~g~a~ 121 (123)
T cd03455 67 ARVKSFAFRLGAPLYAGDTLRFGGRVTAKRD-----------D---------EVVTVELWA-RNSEGDHVMAGTAT 121 (123)
T ss_pred ceEEEEEEEeeccccCCCEEEEEEEEEeecc-----------C---------cEEEEEEEE-EcCCCCEEEeEEEE
Confidence 4567889999999999999999998875321 1 134556666 45788888888754
No 75
>PRK10293 acyl-CoA esterase; Provisional
Probab=86.74 E-value=18 Score=31.18 Aligned_cols=94 Identities=7% Similarity=-0.087 Sum_probs=66.9
Q ss_pred ceeeeeeeecccCcCCcccchhhHHHHHHHhCCcc---cc-c--ccceEEEEEEeccccCCCCEEEEEEEeeccCCCccc
Q 017534 249 YSRLGLIPRRADLDMNQHVNNVTYIGWLLESMPQD---VI-D--THELQTITLDYRRECQQDDVVDSLTSAEPFEDAEPV 322 (370)
Q Consensus 249 ~~~~~~~Vr~sDiD~ngHVNN~~Y~~w~~~~~~~~---~~-~--~~~l~~~~i~Y~~e~~~gd~v~v~t~v~~~~~~~~~ 322 (370)
..+..+.++-..+-..|-++=..+...++.+.... .. . ...=.+++++|.+|+..| .|....++.+.|.
T Consensus 35 ~~~~~~~v~~~~~n~~G~lHGGv~~tLaD~a~~~a~~~~~~~~~~~vTiel~infl~p~~~g-~l~a~a~vv~~Gr---- 109 (136)
T PRK10293 35 TLEATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGYLCTEGEQKVVGLEINANHVRSAREG-RVRGVCKPLHLGS---- 109 (136)
T ss_pred EEEEEEEcCHHHcCCcCcccHHHHHHHHHHHHHHHHHhcccCCceEEEEEEEeEEecccCCc-eEEEEEEEEecCC----
Confidence 34567888888899999999999998887652110 01 1 123358889999999987 6888888887663
Q ss_pred ccccCCCCCCcccCCCCCceEE-EEEEEECCCCcEEEEEEEEEEe
Q 017534 323 SKLQGTNGSPAITGDKEDNHQF-LHLLRLSGDGSEINRGRSVWRK 366 (370)
Q Consensus 323 ~~~~~~~g~~~~~~~~~~~~~~-~h~l~~~~dG~~ia~~~t~W~~ 366 (370)
+..+ .-.+ ..++|+++|.++..|..
T Consensus 110 ------------------~~~~~~~~v-~d~~g~l~A~~~~t~~i 135 (136)
T PRK10293 110 ------------------RHQVWQIEI-FDEKGRLCCSSRLTTAI 135 (136)
T ss_pred ------------------CEEEEEEEE-EeCCCCEEEEEEEEEEE
Confidence 2333 3334 46789999999998864
No 76
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=85.70 E-value=33 Score=32.49 Aligned_cols=54 Identities=11% Similarity=0.027 Sum_probs=47.9
Q ss_pred EeEeeeeeEccccCCCCEEEEEEEEEEeCCeEEEEEEEEEECCCCcEEEEEEEEEE
Q 017534 142 VTARMHIEIYKYPAWSDVVEIETWCQSEGRIGTRRDWILKDYATGEVIGRATSKWV 197 (370)
Q Consensus 142 Vv~r~~Iey~r~p~~gD~V~I~Twv~~~~r~~~~R~f~I~d~~~Gevla~a~s~wV 197 (370)
.+..+++.|.+++..+..|++++...+-||.+..|.-+++ ++|++++++...+.
T Consensus 45 ~~~S~h~~Fl~~~~~~~pv~~~V~~lR~GRs~~~r~V~~~--Q~g~~~~~a~asf~ 98 (271)
T TIGR00189 45 IPHSLHSYFVRAGDPKKPIIYDVERLRDGRSFITRRVKAV--QHGKTIFTLQASFQ 98 (271)
T ss_pred CcceeEEEecCCCCCCCCEEEEEEEeeCCCceEEEEEEEE--ECCEEEEEEEEEcc
Confidence 4568999999999999999999999999999999988887 58999999887765
No 77
>COG1607 Acyl-CoA hydrolase [Lipid metabolism]
Probab=85.15 E-value=7.4 Score=34.66 Aligned_cols=68 Identities=10% Similarity=0.112 Sum_probs=51.7
Q ss_pred eeeeeecccCcCCcccchhhHHHHHHHhCCc---ccccccce--EEEEEEeccccCCCCEEEEEEEeeccCCC
Q 017534 252 LGLIPRRADLDMNQHVNNVTYIGWLLESMPQ---DVIDTHEL--QTITLDYRRECQQDDVVDSLTSAEPFEDA 319 (370)
Q Consensus 252 ~~~~Vr~sDiD~ngHVNN~~Y~~w~~~~~~~---~~~~~~~l--~~~~i~Y~~e~~~gd~v~v~t~v~~~~~~ 319 (370)
....|-.+|.+.||-+.=-.-+.|+.++... .+..+..+ .-=.++|++|++.||.|.+..++...|++
T Consensus 16 ~~~lv~P~dtN~~g~ifGG~lm~~mD~~a~i~A~~~a~~~vVTasvd~v~F~~Pv~vGd~v~~~a~v~~~GrT 88 (157)
T COG1607 16 LRTLVMPSDTNPNGTIFGGWLLSWMDLAAAIAASRHAGGRVVTASVDSVDFKKPVRVGDIVCLYARVVYTGRT 88 (157)
T ss_pred EEEEecCCccCcccccccHHHHHHHHHHHHHHHHHHhCCeEEEEEeceEEEccccccCcEEEEEEEEeecCcc
Confidence 4567889999999998888888888877321 12222222 23467999999999999999999998874
No 78
>KOG3328 consensus HGG motif-containing thioesterase [General function prediction only]
Probab=84.54 E-value=3.2 Score=36.52 Aligned_cols=92 Identities=11% Similarity=0.054 Sum_probs=66.3
Q ss_pred eeeeeeecccCcCCcccchhhHHHHHHHhCCc-----ccccccceEEEEEEeccccCCCCEEEEEEEeeccCCCcccccc
Q 017534 251 RLGLIPRRADLDMNQHVNNVTYIGWLLESMPQ-----DVIDTHELQTITLDYRRECQQDDVVDSLTSAEPFEDAEPVSKL 325 (370)
Q Consensus 251 ~~~~~Vr~sDiD~ngHVNN~~Y~~w~~~~~~~-----~~~~~~~l~~~~i~Y~~e~~~gd~v~v~t~v~~~~~~~~~~~~ 325 (370)
..+++|.-..++..+-..+-.-...++..-.. .-....+-..+.|.|..++.+||.|.+...+.+.|.
T Consensus 40 ~ce~kV~~~~~N~~k~LHGG~tAtLvD~i~s~~~~~~~~~~~gvsvdLsvsyL~~AklGe~l~i~a~~vr~Gk------- 112 (148)
T KOG3328|consen 40 SCELKVTPDHLNRFKTLHGGATATLVDLITSAALLMTSGFKPGVSVDLSVSYLSSAKLGEELEIEATVVRVGK------- 112 (148)
T ss_pred EEEEEeCHHHcCccccccccchhhHHHHHhhHHHHhccCCCCceEEEEEhhhccccCCCCeEEEEEEEeecCc-------
Confidence 46788888888888887776555544433211 111234567999999999999999999999988764
Q ss_pred cCCCCCCcccCCCCCceEE-EEEEEECCCCcEEEEEEEEE
Q 017534 326 QGTNGSPAITGDKEDNHQF-LHLLRLSGDGSEINRGRSVW 364 (370)
Q Consensus 326 ~~~~g~~~~~~~~~~~~~~-~h~l~~~~dG~~ia~~~t~W 364 (370)
.+.| .-.|+...||++++.++-+-
T Consensus 113 ---------------~la~t~v~l~~K~t~kiia~grhtk 137 (148)
T KOG3328|consen 113 ---------------TLAFTDVELRRKSTGKIIAKGRHTK 137 (148)
T ss_pred ---------------eEEEEEEEEEEcCCCeEEEecceEE
Confidence 2333 55688888999999988643
No 79
>cd03453 SAV4209_like SAV4209_like. Similar in sequence to the Streptomyces avermitilis SAV4209 protein, with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=83.79 E-value=8.4 Score=32.22 Aligned_cols=58 Identities=12% Similarity=0.134 Sum_probs=39.9
Q ss_pred cceEEEEEEeccccCCCCEEEEEEEeeccCCCcccccccCCCCCCcccCCCCCceEEEEEEEECCCCcEEEEEEEE
Q 017534 288 HELQTITLDYRRECQQDDVVDSLTSAEPFEDAEPVSKLQGTNGSPAITGDKEDNHQFLHLLRLSGDGSEINRGRSV 363 (370)
Q Consensus 288 ~~l~~~~i~Y~~e~~~gd~v~v~t~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~l~~~~dG~~ia~~~t~ 363 (370)
..+.++++.|++|++.||+|.+...+..... .+| ..-..+...+ .+.+|.++..|+.+
T Consensus 68 ~~i~~~~~rf~~Pv~~Gdtl~~~~~v~~~~~---------~~~--------~~~v~~~~~~-~nq~g~~v~~g~a~ 125 (127)
T cd03453 68 GRVVSFGVRFTKPVPVPDTLTCTGIVVEKTV---------ADG--------EDALTVTVDA-TDQAGGKKVLGRAI 125 (127)
T ss_pred cceEEEEEEECCcCcCCCEEEEEEEEEEEEe---------cCC--------CcEEEEEEEE-EEcCCCEEEEEEEE
Confidence 3467889999999999999999988765311 011 1234566666 45678888887653
No 80
>cd03447 FAS_MaoC FAS_MaoC, the MaoC-like hot dog fold of the fatty acid synthase, beta subunit. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and 17-beta-hydroxysteriod dehydrogenase (HSD).
Probab=82.77 E-value=11 Score=31.87 Aligned_cols=54 Identities=13% Similarity=0.151 Sum_probs=37.8
Q ss_pred ceEEEEEEeccccCCCCEEEEEEEeeccCCCcccccccCCCCCCcccCCCCCceEEEEEEEECCCCcEEEEEEEE
Q 017534 289 ELQTITLDYRRECQQDDVVDSLTSAEPFEDAEPVSKLQGTNGSPAITGDKEDNHQFLHLLRLSGDGSEINRGRSV 363 (370)
Q Consensus 289 ~l~~~~i~Y~~e~~~gd~v~v~t~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~l~~~~dG~~ia~~~t~ 363 (370)
.+...++.|++|++.||+|.+..++.... +| ...+...++..++|+.+..|...
T Consensus 69 ~~~~~~~rf~~PV~~gdtl~~~~~v~~~~-----------~~----------~~~~~~~~~nq~~g~~V~~g~~~ 122 (126)
T cd03447 69 RVRSFTASFVGMVLPNDELEVRLEHVGMV-----------DG----------RKVIKVEARNEETGELVLRGEAE 122 (126)
T ss_pred eEEEEEEEEcccCcCCCEEEEEEEEEEEe-----------CC----------eEEEEEEEEECCCCCEEEEEEEE
Confidence 45678999999999999999988776531 11 23555566443338888777654
No 81
>COG2050 PaaI HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=82.48 E-value=8.9 Score=32.81 Aligned_cols=95 Identities=7% Similarity=0.038 Sum_probs=64.1
Q ss_pred eeeeeeecccCcCCcccchhhHHHHHHHhCCccc---ccc-c--ceEEEEEEeccccCCCCEEEEEEEeeccCCCccccc
Q 017534 251 RLGLIPRRADLDMNQHVNNVTYIGWLLESMPQDV---IDT-H--ELQTITLDYRRECQQDDVVDSLTSAEPFEDAEPVSK 324 (370)
Q Consensus 251 ~~~~~Vr~sDiD~ngHVNN~~Y~~w~~~~~~~~~---~~~-~--~l~~~~i~Y~~e~~~gd~v~v~t~v~~~~~~~~~~~ 324 (370)
+..+.+.-..+-..|=++=-..+..++.+..... +.. . .=.++.|+|.++++.|+ |.....+.+.|.
T Consensus 37 ~~~l~~~~~~~~~~G~~HGG~i~alaD~a~~~a~~~~~~~~~~~~ti~l~i~flr~~~~g~-v~a~a~v~~~G~------ 109 (141)
T COG2050 37 EATLPVDPELLNPGGILHGGVIAALADSAAGLAANSLLGVVALAVTLELNINFLRPVKEGD-VTAEARVLHLGR------ 109 (141)
T ss_pred EEEeecCHHHcCCCceeeHHHHHHHHHHHHHHHHhhccCccceeEEEEEEehhccCCCCCe-EEEEEEEEeeCC------
Confidence 3456666666667788888888887776643211 111 1 12488899999999999 999999988764
Q ss_pred ccCCCCCCcccCCCCCceEE-EEEEEECCCCcEEEEEEEEEEecc
Q 017534 325 LQGTNGSPAITGDKEDNHQF-LHLLRLSGDGSEINRGRSVWRKKP 368 (370)
Q Consensus 325 ~~~~~g~~~~~~~~~~~~~~-~h~l~~~~dG~~ia~~~t~W~~~~ 368 (370)
...+ .-.+...+.|+++|.++..|.-..
T Consensus 110 ----------------~~~v~~i~v~~~~~~~lva~~~~t~~v~~ 138 (141)
T COG2050 110 ----------------RVAVVEIEVKNDEGGRLVAKGTGTYAVLR 138 (141)
T ss_pred ----------------EEEEEEEEEEECCCCeEEEEEEEEEEEec
Confidence 3333 333432344699999999887543
No 82
>cd03441 R_hydratase_like (R)-hydratase [(R)-specific enoyl-CoA hydratase]. Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. The structure of the monomer includes a five-strand antiparallel beta-sheet wrapped around a central alpha helix, referred to as a hot dog fold. The active site lies within a substrate-binding tunnel formed by the homodimer. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit.
Probab=82.43 E-value=17 Score=29.52 Aligned_cols=58 Identities=10% Similarity=0.085 Sum_probs=40.0
Q ss_pred ccceEEEEEEeccccCCCCEEEEEEEeeccCCCcccccccCCCCCCcccCCCCCceEEEEEEEECCCCcEEEEEEE
Q 017534 287 THELQTITLDYRRECQQDDVVDSLTSAEPFEDAEPVSKLQGTNGSPAITGDKEDNHQFLHLLRLSGDGSEINRGRS 362 (370)
Q Consensus 287 ~~~l~~~~i~Y~~e~~~gd~v~v~t~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~l~~~~dG~~ia~~~t 362 (370)
...+...++.|++|++.||.|++..++...... .| .....+..... +++|..+..|..
T Consensus 67 ~~~~~~~~~~f~~Pv~~Gd~l~~~~~v~~~~~~---------~~--------~~~v~~~~~~~-n~~g~~v~~g~~ 124 (127)
T cd03441 67 GANLGSQSVRFLAPVFPGDTLRVEVEVLGKRPS---------KG--------RGVVTVRTEAR-NQGGEVVLSGEA 124 (127)
T ss_pred cceeEEeEEEEeCCcCCCCEEEEEEEEEEeecc---------CC--------CcEEEEEEEEE-eCCCCEEEEEEE
Confidence 346789999999999999999999988764321 01 12345555563 456787777654
No 83
>PF07977 FabA: FabA-like domain; InterPro: IPR013114 Fatty acids biosynthesis occurs by two distinct pathways: in fungi, mammals and mycobacteria, type I or associative fatty-acid biosynthesis (type I FAS) is accomplished by multifunctional proteins in which distinct domains catalyse specific reactions; in plants and most bacteria, type II or dissociative fatty-acid biosynthesis (type II FAS) is accomplished by distinct enzymes []. Both FabZ and FabA catalyse the dehydration of beta-hydroxyacyl acyl carrier protein (ACP) to trans 2-enoyl ACP. However, FabZ and FabA display subtle differences in substrate specificities, whereby FabA is most effective on acyl ACPs of 9-11 carbon atoms in length, while FabZ is less specific. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains. This enzyme domain has a HotDog fold.; PDB: 3D6X_F 2GLV_J 2GLM_E 2GLP_E 2GLL_C 1U1Z_F 3ESI_A 3AZB_T 3AZA_M 3AZ9_U ....
Probab=79.47 E-value=37 Score=28.71 Aligned_cols=88 Identities=10% Similarity=0.007 Sum_probs=56.7
Q ss_pred CCCcCHHHHHHHHHHHHHHHHHHcCCCCCCccchhhhhhcCeEEEeEeeeeeEccccCCCC-EEEEEEEEEE---eCCeE
Q 017534 98 NKTATVETIANLLQEVGCNHAQSVGFSTDGFATTTTMRKLHLIWVTARMHIEIYKYPAWSD-VVEIETWCQS---EGRIG 173 (370)
Q Consensus 98 ~Ghv~~~~yl~~~qea~~~~~~~lG~~~~~~~~~~~l~~~gl~wVv~r~~Iey~r~p~~gD-~V~I~Twv~~---~~r~~ 173 (370)
+..+--.-+++.|-+++..++...+..... -......+...--+++|+++..-|| .++++..+.+ .....
T Consensus 47 ~Pv~PGvl~iE~~aQ~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~kF~~~v~Pg~~~l~~~v~i~~~~~~~~~~ 120 (138)
T PF07977_consen 47 DPVMPGVLLIEAMAQAAGFLAGYSGLAEGT------GEARKVPFLAGIRNVKFRGPVYPGDKTLRIEVEIKKIRRREGGM 120 (138)
T ss_dssp S--B-HHHHHHHHHHHHHHHHHHHCCSSSC------CCCCEEEEEEEEEEEEE-S-B-TTE-EEEEEEEEEEEEEEETTE
T ss_pred CCCCCeEhHHHHHHHHHHhHhhhccccccC------CCcceEEEeccccEEEECccEeCCCcEEEEEEEEEEeecccCCE
Confidence 344555567788877777777666542210 0011345666778899999999999 9999999888 55555
Q ss_pred EEEEEEEEECCCCcEEEEEE
Q 017534 174 TRRDWILKDYATGEVIGRAT 193 (370)
Q Consensus 174 ~~R~f~I~d~~~Gevla~a~ 193 (370)
...+..++ .+|+.+++|+
T Consensus 121 ~~~~~~~~--vdg~~v~~~~ 138 (138)
T PF07977_consen 121 AIFDGTAY--VDGELVAEAE 138 (138)
T ss_dssp EEEEEEEE--ETTEEEEEEE
T ss_pred EEEEEEEE--ECCEEEEEEC
Confidence 65667777 4899998874
No 84
>PRK10254 thioesterase; Provisional
Probab=79.23 E-value=33 Score=29.61 Aligned_cols=92 Identities=7% Similarity=-0.104 Sum_probs=65.3
Q ss_pred eeeeeeeecccCcCCcccchhhHHHHHHHhCCccc---c-c--ccceEEEEEEeccccCCCCEEEEEEEeeccCCCcccc
Q 017534 250 SRLGLIPRRADLDMNQHVNNVTYIGWLLESMPQDV---I-D--THELQTITLDYRRECQQDDVVDSLTSAEPFEDAEPVS 323 (370)
Q Consensus 250 ~~~~~~Vr~sDiD~ngHVNN~~Y~~w~~~~~~~~~---~-~--~~~l~~~~i~Y~~e~~~gd~v~v~t~v~~~~~~~~~~ 323 (370)
.+..+.++....-.+|-|+=..+...++.+..... . . ...=.++.++|.+|+.-| .|.....+.+.|.
T Consensus 36 ~~~~l~v~~~~~n~~G~vHGGv~~tLaD~a~g~A~~~~~~~g~~~vTiel~in~Lrp~~~g-~l~a~a~vi~~Gr----- 109 (137)
T PRK10254 36 LEAEMPVDTRTHQPFGLLHGGASAALAETLGSMAGFLMTRDGQCVVGTELNATHHRPVSEG-KVRGVCQPLHLGR----- 109 (137)
T ss_pred EEEEEEcCccccCCCCcchHHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEEeEEeccCcCC-eEEEEEEEEecCc-----
Confidence 35667888888899999999999999887632110 0 1 123357888999999877 7888888888764
Q ss_pred cccCCCCCCcccCCCCCceEE-EEEEEECCCCcEEEEEEEEEE
Q 017534 324 KLQGTNGSPAITGDKEDNHQF-LHLLRLSGDGSEINRGRSVWR 365 (370)
Q Consensus 324 ~~~~~~g~~~~~~~~~~~~~~-~h~l~~~~dG~~ia~~~t~W~ 365 (370)
...+ .-.+ ..++|+.+|.++-.-.
T Consensus 110 -----------------~~~v~~~~v-~d~~g~l~a~~~~t~~ 134 (137)
T PRK10254 110 -----------------QNQSWEIVV-FDEQGRRCCTCRLGTA 134 (137)
T ss_pred -----------------CEEEEEEEE-EcCCCCEEEEEEEEEE
Confidence 2333 3344 4678999999886543
No 85
>PF03756 AfsA: A-factor biosynthesis hotdog domain; InterPro: IPR005509 The AfsA family are key enzymes in A-factor biosynthesis, which is essential for streptomycin production and resistance. This domain is distantly related to the thioester dehydratase FabZ family and therefore has a Hotdog domain [].
Probab=77.92 E-value=41 Score=28.28 Aligned_cols=89 Identities=11% Similarity=0.150 Sum_probs=59.3
Q ss_pred CCCCcCHHHHHHHHHHHHHHHHHHcCCCCCCccchhhhhhcCeEEEeEeeeeeEccccCCCCEEEEEEEEEEeCC-----
Q 017534 97 INKTATVETIANLLQEVGCNHAQSVGFSTDGFATTTTMRKLHLIWVTARMHIEIYKYPAWSDVVEIETWCQSEGR----- 171 (370)
Q Consensus 97 ~~Ghv~~~~yl~~~qea~~~~~~~lG~~~~~~~~~~~l~~~gl~wVv~r~~Iey~r~p~~gD~V~I~Twv~~~~r----- 171 (370)
+.+|+...-+++=+-++........+ +. ..+-.+++..+.++|.++..++-.+.|+..+.....
T Consensus 39 ~~dh~~gmll~Ea~RQa~~~~~h~~~-~v----------p~~~~~~~~~l~~~f~~~~e~~~P~~~~~~~~~~~~~~~~~ 107 (132)
T PF03756_consen 39 PGDHVPGMLLLEAARQAGIALAHRFY-GV----------PLDHQFVLTSLDFTFSRFAELDVPADLTVRITCRDRRGGRP 107 (132)
T ss_pred CCCccChHHHHHHHHHHHHHhhcccc-CC----------CCCceEEEEEEEEEEccccccCCCEEEEEEEEeccccCCcc
Confidence 44567666666555555554433321 11 134468999999999999888888888887765332
Q ss_pred eEEEEEEEEEECCCCcEEEEEEEEEEE
Q 017534 172 IGTRRDWILKDYATGEVIGRATSKWVM 198 (370)
Q Consensus 172 ~~~~R~f~I~d~~~Gevla~a~s~wV~ 198 (370)
........+. .+|++++++...+-|
T Consensus 108 ~~~~~~v~~~--q~g~~~a~~~~~~tc 132 (132)
T PF03756_consen 108 RGLRFRVTVS--QGGRVVATASMTFTC 132 (132)
T ss_pred ceEEEEEEEE--ECCEEEEEEEEEEEC
Confidence 3444556676 689999999998754
No 86
>cd03446 MaoC_like MoaC_like Similar to the MaoC (monoamine oxidase C) dehydratase regulatory protein but without the N-terminal PutA domain. This protein family has a hot-dog fold similar to that of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=77.34 E-value=16 Score=30.73 Aligned_cols=55 Identities=9% Similarity=0.067 Sum_probs=38.0
Q ss_pred EEEeccccCCCCEEEEEEEeeccCCCcccccccCCCCCCcccCCCCCceEEEEEEEECCCCcEEEEEEEEE
Q 017534 294 TLDYRRECQQDDVVDSLTSAEPFEDAEPVSKLQGTNGSPAITGDKEDNHQFLHLLRLSGDGSEINRGRSVW 364 (370)
Q Consensus 294 ~i~Y~~e~~~gd~v~v~t~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~l~~~~dG~~ia~~~t~W 364 (370)
++.|++|++.||+|.+...+...... ..+ ...-..+...+ .+.+|+++..+++..
T Consensus 84 ~~~f~~pv~~GD~l~~~~~v~~~~~~--------~~~-------~~~~v~~~~~~-~nq~g~~v~~~~~~~ 138 (140)
T cd03446 84 NLRFLNPVFIGDTIRAEAEVVEKEEK--------DGE-------DAGVVTRRIEV-VNQRGEVVQSGEMSL 138 (140)
T ss_pred eEEEcCCCCCCCEEEEEEEEEEeccc--------CCC-------CceEEEEEEEE-EcCCCCEEEEEEEee
Confidence 89999999999999999988764320 001 11234555555 457899999988764
No 87
>COG2030 MaoC Acyl dehydratase [Lipid metabolism]
Probab=77.31 E-value=17 Score=31.94 Aligned_cols=58 Identities=10% Similarity=-0.029 Sum_probs=44.1
Q ss_pred EEEeEeeeeeEccccCCCCEEEEEEEEEEeC-----CeEEEEEEEEEECCCCcEEEEEEEEEEEE
Q 017534 140 IWVTARMHIEIYKYPAWSDVVEIETWCQSEG-----RIGTRRDWILKDYATGEVIGRATSKWVMM 199 (370)
Q Consensus 140 ~wVv~r~~Iey~r~p~~gD~V~I~Twv~~~~-----r~~~~R~f~I~d~~~Gevla~a~s~wV~v 199 (370)
+-.+.-..++|.+|...||+|..++++.+.. +....| .+.++ .+|++...+...+++.
T Consensus 93 ~~~~g~~~vRF~~PV~~Gdtl~~~~~v~~~~~~~~~G~v~~~-~~~~~-~~g~~v~~~~~~~~~~ 155 (159)
T COG2030 93 GANLGGDEVRFVKPVFPGDTLRARVEVLDKRPSKSRGLVTLR-LETVN-QEGELVLTLEATVLVL 155 (159)
T ss_pred eeeccccceEecCCCCCCCEEEEEEEEEEeeecCCceEEEEE-EEEEc-cCCcEEEEEEEeEeEe
Confidence 4456667899999999999999999998753 233333 35666 8899998888887764
No 88
>cd01289 FabA_like Domain of unknown function, appears to be related to a diverse group of beta-hydroxydecanoyl ACP dehydratases (FabA) and beta-hydroxyacyl ACP dehydratases (FabZ). This group appears to lack the conserved active site histidine of FabA and FabZ.
Probab=76.48 E-value=48 Score=28.35 Aligned_cols=89 Identities=7% Similarity=-0.100 Sum_probs=58.1
Q ss_pred CCCcCHHHHHHHHHHHHHHHHHHcCCCCCCccchhhhhhcCeEEEeEeeeeeEccccCC-CCEEEEEEEEEEeCC-eEEE
Q 017534 98 NKTATVETIANLLQEVGCNHAQSVGFSTDGFATTTTMRKLHLIWVTARMHIEIYKYPAW-SDVVEIETWCQSEGR-IGTR 175 (370)
Q Consensus 98 ~Ghv~~~~yl~~~qea~~~~~~~lG~~~~~~~~~~~l~~~gl~wVv~r~~Iey~r~p~~-gD~V~I~Twv~~~~r-~~~~ 175 (370)
++.+.-..++++|-++...+.-.+..... .+..++..+.=-+++|+++..- ||.+.|+.......+ -...
T Consensus 44 ~~~~P~~l~iE~mAQa~a~~~g~~~~~~~--------~~~~~g~l~~i~~~~f~~~v~p~Gd~l~i~~~~~~~~~~~~~~ 115 (138)
T cd01289 44 HGRLPAWVGIEYMAQAIAAHGGLLARQQG--------NPPRPGFLLGSRKYEAHVDRFDLGSTLLIVVAELLQGDSGLGV 115 (138)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHhcC--------CCCCcEEEEEEEEEEEEcceeCCCCeeEEEeeeeeeCCCcEEE
Confidence 37888889999999987776421111000 1223455555568999988655 999999998776542 3333
Q ss_pred EEEEEEECCCCcEEEEEEEEE
Q 017534 176 RDWILKDYATGEVIGRATSKW 196 (370)
Q Consensus 176 R~f~I~d~~~Gevla~a~s~w 196 (370)
.+-.++ .+|+++|+|..+.
T Consensus 116 ~~~~~~--v~~~~va~a~l~~ 134 (138)
T cd01289 116 FECTIE--DQGGVLASGRLNV 134 (138)
T ss_pred EEEEEE--ECCEEEEEEEEEE
Confidence 344566 4789999998754
No 89
>cd00556 Thioesterase_II Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=74.97 E-value=23 Score=27.52 Aligned_cols=54 Identities=7% Similarity=-0.018 Sum_probs=40.4
Q ss_pred cceEEEEEEeccccCCCCEEEEEEEeeccCCCcccccccCCCCCCcccCCCCCceEEEEEEEECCCCcEEEEEEEE
Q 017534 288 HELQTITLDYRRECQQDDVVDSLTSAEPFEDAEPVSKLQGTNGSPAITGDKEDNHQFLHLLRLSGDGSEINRGRSV 363 (370)
Q Consensus 288 ~~l~~~~i~Y~~e~~~gd~v~v~t~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~l~~~~dG~~ia~~~t~ 363 (370)
....++.+.|.++...++.+....++...|+ +..+.+--..+++|+.++.+...
T Consensus 43 ~~t~~~~i~F~~~~~~~~~~~~~~~~~~~g~----------------------~~~~~~~~i~~~~G~lva~~~~~ 96 (99)
T cd00556 43 FASLDHHIYFHRPGDADEWLLYEVESLRDGR----------------------SRALRRGRAYQRDGKLVASATQS 96 (99)
T ss_pred eeeeEEEEEEcCCCCCCccEEEEEEecccCC----------------------CceEEEEEEECCCCcEEEEEEEe
Confidence 3567899999999999999999888877553 33444443356679999988754
No 90
>cd03451 FkbR2 FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes. FkbR2 has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The function of FkbR2 is unknown.
Probab=73.45 E-value=19 Score=30.53 Aligned_cols=58 Identities=5% Similarity=-0.036 Sum_probs=38.5
Q ss_pred EEEEeccccCCCCEEEEEEEeeccCCCcccccccCCCCCCcccCCCCCceEEEEEEEECCCCcEEEEEEEEEE
Q 017534 293 ITLDYRRECQQDDVVDSLTSAEPFEDAEPVSKLQGTNGSPAITGDKEDNHQFLHLLRLSGDGSEINRGRSVWR 365 (370)
Q Consensus 293 ~~i~Y~~e~~~gd~v~v~t~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~l~~~~dG~~ia~~~t~W~ 365 (370)
.++.|++|++.||+|++...+...-.. .+.. ...-..+...+ .+.+|+.++.++....
T Consensus 84 ~~~~f~~pv~~GDtl~~~~~v~~~~~~------~~~~--------~~~~v~~~~~~-~nq~g~~V~~~~~~~~ 141 (146)
T cd03451 84 DEVRFPAPVFHGDTLYAESEVLSKRES------KSRP--------DAGIVTVRTVG-YNQDGEPVLSFERTAL 141 (146)
T ss_pred cEEEecCCCCCCCEEEEEEEEEEEecC------CCCC--------CCeEEEEEEEE-ECCCCCEEEEEEehhE
Confidence 489999999999999998888753210 0000 11234455555 4678999999887653
No 91
>PRK00006 fabZ (3R)-hydroxymyristoyl-ACP dehydratase; Reviewed
Probab=72.60 E-value=21 Score=30.54 Aligned_cols=52 Identities=10% Similarity=0.060 Sum_probs=38.6
Q ss_pred EEEEeccccCCCCEEEEEEEeeccCCCcccccccCCCCCCcccCCCCCceEEEEEEEECCCCcEEEEEEEEEEec
Q 017534 293 ITLDYRRECQQDDVVDSLTSAEPFEDAEPVSKLQGTNGSPAITGDKEDNHQFLHLLRLSGDGSEINRGRSVWRKK 367 (370)
Q Consensus 293 ~~i~Y~~e~~~gd~v~v~t~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~l~~~~dG~~ia~~~t~W~~~ 367 (370)
-++.|++|++.||+|.+...+...+. ....+...+. .+|+.+++|+..-..+
T Consensus 94 ~~~kF~~pv~pGd~l~i~~~i~~~~~---------------------~~v~~~~~~~--~~g~~v~~~~~~~~~~ 145 (147)
T PRK00006 94 DKARFKRPVVPGDQLILEVELLKQRR---------------------GIWKFKGVAT--VDGKLVAEAELMFAIR 145 (147)
T ss_pred eEEEEccccCCCCEEEEEEEEEEeeC---------------------CEEEEEEEEE--ECCEEEEEEEEEEEEE
Confidence 47999999999999999988775321 2345666663 4789999998776543
No 92
>PRK13692 (3R)-hydroxyacyl-ACP dehydratase subunit HadA; Provisional
Probab=72.45 E-value=21 Score=31.58 Aligned_cols=56 Identities=5% Similarity=0.086 Sum_probs=39.2
Q ss_pred EEEEEeccccCCCCEEEEEEEeeccCCCcccccccCCCCCCcccCCCCCceEEEEEEEECCCCcEEEEEEEEEE
Q 017534 292 TITLDYRRECQQDDVVDSLTSAEPFEDAEPVSKLQGTNGSPAITGDKEDNHQFLHLLRLSGDGSEINRGRSVWR 365 (370)
Q Consensus 292 ~~~i~Y~~e~~~gd~v~v~t~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~l~~~~dG~~ia~~~t~W~ 365 (370)
..++.|.+|++.||+|.+...+..... .+ + -.-+.+.+.++ +.+|+++..+.+.-.
T Consensus 88 ~q~~~f~~PV~~GDtL~~~~eV~~~~~-------~~-~---------~giv~~~~~v~-Nq~Ge~V~~~~~~~~ 143 (159)
T PRK13692 88 DQVLKFEKPIVAGDKLYCDVYVDSVRE-------AH-G---------TQIIVTKNIVT-NEEGDVVQETYTTLA 143 (159)
T ss_pred eeEEEEeCCccCCCEEEEEEEEEEEEE-------cC-C---------ceEEEEEEEEE-cCCCCEEEEEEEEEE
Confidence 378999999999999999888764311 00 1 12456777774 678898888776543
No 93
>PF13452 MaoC_dehydrat_N: N-terminal half of MaoC dehydratase; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1S9C_K 3OML_A 3KHP_A.
Probab=71.79 E-value=12 Score=31.29 Aligned_cols=55 Identities=13% Similarity=0.169 Sum_probs=35.1
Q ss_pred eEEEEEEeccccCCCCEEEEEEEeeccCCCcccccccCCCCCCcccCCCCCceEEEEEEEECCCCcEEEE
Q 017534 290 LQTITLDYRRECQQDDVVDSLTSAEPFEDAEPVSKLQGTNGSPAITGDKEDNHQFLHLLRLSGDGSEINR 359 (370)
Q Consensus 290 l~~~~i~Y~~e~~~gd~v~v~t~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~l~~~~dG~~ia~ 359 (370)
-...++.|.+|++.||.|++.+.+..+... .+ +|.. .-+.+...+ .+.+|+.+++
T Consensus 77 h~~~~~~~h~Pl~~Gd~l~~~~~v~~v~~k------~g-~G~~-------~~v~~~~~~-~~~~Ge~v~t 131 (132)
T PF13452_consen 77 HGEQDIEFHRPLRPGDTLTATSRVTDVYDK------RG-AGKG-------VFVTVETEY-TDQDGELVAT 131 (132)
T ss_dssp EEEEEEEESS--BSSEEEEEEEEEEEEEEE------S--TTSE-------EEEEEEEEE-E-CTTEEEEE
T ss_pred ecCcEEEEeCCCCCCCEEEEEEEEEEEEEe------cC-CCCE-------EEEEEEEEE-ECCCCCEEEe
Confidence 368999999999999999999999875321 12 3421 123444445 4578998875
No 94
>PLN02322 acyl-CoA thioesterase
Probab=71.12 E-value=74 Score=28.14 Aligned_cols=69 Identities=4% Similarity=-0.161 Sum_probs=51.3
Q ss_pred eeeeeeeecccCcCCcccchhhHHHHHHHhCCccc--c---cccceEEEEEEeccccCCCCEEEEEEEeeccCC
Q 017534 250 SRLGLIPRRADLDMNQHVNNVTYIGWLLESMPQDV--I---DTHELQTITLDYRRECQQDDVVDSLTSAEPFED 318 (370)
Q Consensus 250 ~~~~~~Vr~sDiD~ngHVNN~~Y~~w~~~~~~~~~--~---~~~~l~~~~i~Y~~e~~~gd~v~v~t~v~~~~~ 318 (370)
....+.++-..+...|=++=..+...++.+..... . ....=.++.|+|.+|+..|+.|.....+.+.|.
T Consensus 28 ~~~~m~v~~~~~N~~G~vHGGv~atLaDta~g~A~~~~~~~~~~vTiel~infLrpa~~G~~L~Aea~vv~~Gr 101 (154)
T PLN02322 28 VTGRLPVSPMCCQPFKVLHGGVSALIAESLASLGAHMASGFKRVAGIQLSINHLKSADLGDLVFAEATPVSTGK 101 (154)
T ss_pred EEEEEECCHHHcCCCCCccHHHHHHHHHHHHHHHHhhccCCCceEEEEEEEEEeccCCCCCEEEEEEEEEecCC
Confidence 34567778888889999999999888876521110 0 112336889999999999999999999988764
No 95
>PRK13188 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed
Probab=70.57 E-value=1.1e+02 Score=31.96 Aligned_cols=57 Identities=9% Similarity=-0.099 Sum_probs=41.9
Q ss_pred EEeEe-eeeeEccccCCCCEEEEEEEEEE-eCCeEEEEEEEEEECCCCcEEEEEEEEEEEE
Q 017534 141 WVTAR-MHIEIYKYPAWSDVVEIETWCQS-EGRIGTRRDWILKDYATGEVIGRATSKWVMM 199 (370)
Q Consensus 141 wVv~r-~~Iey~r~p~~gD~V~I~Twv~~-~~r~~~~R~f~I~d~~~Gevla~a~s~wV~v 199 (370)
+.+.. -+++|.+|+..||+|++++.+.+ ..+.....+-.++ .+|+++++|....++.
T Consensus 402 g~LlgI~kvKF~~PV~PGDtL~I~veI~~~~~~giv~f~g~~~--vdGelVaeael~~~v~ 460 (464)
T PRK13188 402 TYFMKIDKVKFRQKVVPGDTLIFKVELLSPIRRGICQMQGKAY--VNGKLVCEAELMAQIV 460 (464)
T ss_pred EEEEeccEEEEcCCCCCCCEEEEEEEEEEEecCCEEEEEEEEE--ECCEEEEEEEEEEEEe
Confidence 34445 48999999999999999999876 3222323344555 5899999999988765
No 96
>cd03454 YdeM YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function. YdeM has sequence similarity to the hot-dog fold of (R)-specific enoyl-CoA hydratase. Other enzymes with this fold include the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=69.16 E-value=24 Score=29.76 Aligned_cols=57 Identities=9% Similarity=0.004 Sum_probs=37.7
Q ss_pred EEEEeccccCCCCEEEEEEEeeccCCCcccccccCCCCCCcccCCCCCceEEEEEEEECCCCcEEEEEEEEE
Q 017534 293 ITLDYRRECQQDDVVDSLTSAEPFEDAEPVSKLQGTNGSPAITGDKEDNHQFLHLLRLSGDGSEINRGRSVW 364 (370)
Q Consensus 293 ~~i~Y~~e~~~gd~v~v~t~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~l~~~~dG~~ia~~~t~W 364 (370)
.++.|++|++.||+|.+..++..+... .+..| ..-..+...+ .+.+|++++.+....
T Consensus 81 ~~~~f~~pv~~Gd~l~~~~~v~~~~~~------~~~~~--------~~~v~~~~~~-~nq~g~~v~~~~~~~ 137 (140)
T cd03454 81 DELRWPRPVRPGDTLSVEVEVLDKRPS------RSRPD--------RGIVTLRSET-LNQRGEVVLTFEATV 137 (140)
T ss_pred eeeEeCCCCCCCCEEEEEEEEEEEeec------CCCCC--------CeEEEEEEEE-EcCCCCEEEEEEehh
Confidence 489999999999999999988764210 00011 1223444445 467899998887643
No 97
>PRK13691 (3R)-hydroxyacyl-ACP dehydratase subunit HadC; Provisional
Probab=68.77 E-value=31 Score=30.73 Aligned_cols=57 Identities=7% Similarity=0.039 Sum_probs=39.9
Q ss_pred EEEEEeccccCCCCEEEEEEEeeccCCCcccccccCCCCCCcccCCCCCceEEEEEEEECCCCcEEEEEEEEEEe
Q 017534 292 TITLDYRRECQQDDVVDSLTSAEPFEDAEPVSKLQGTNGSPAITGDKEDNHQFLHLLRLSGDGSEINRGRSVWRK 366 (370)
Q Consensus 292 ~~~i~Y~~e~~~gd~v~v~t~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~l~~~~dG~~ia~~~t~W~~ 366 (370)
..+..|.+|++.||.|.+...+..... .+ ++ .-..+...+ .+.+|++++.+...+.-
T Consensus 88 ~q~~~f~rPV~~GDtL~~~~~V~~~~~-------~~-~~---------g~V~~~~~~-~NQ~Ge~V~~~~~~~~~ 144 (166)
T PRK13691 88 DQRFVFHKPVLAGDKLWARMDIHSVDE-------RF-GA---------DIVVTRNVC-TNDDGELVMEAYTTLMG 144 (166)
T ss_pred eeEEEEeCCcCCCCEEEEEEEEEEEEE-------cC-CC---------cEEEEEEEE-ECCCCCEEEEEEEEEEE
Confidence 357889999999999999998875310 00 00 234555666 57789999988877654
No 98
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=68.00 E-value=27 Score=31.65 Aligned_cols=53 Identities=8% Similarity=0.009 Sum_probs=37.1
Q ss_pred ceEEEEEEeccccCCCCEEEEEEEeeccCCCcccccccCCCCCCcccCCCCCceEEEEEEEECCCCcEEEEEEEEE
Q 017534 289 ELQTITLDYRRECQQDDVVDSLTSAEPFEDAEPVSKLQGTNGSPAITGDKEDNHQFLHLLRLSGDGSEINRGRSVW 364 (370)
Q Consensus 289 ~l~~~~i~Y~~e~~~gd~v~v~t~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~l~~~~dG~~ia~~~t~W 364 (370)
.....++.|++|+.+||.|.+...+...+. ....+.-. ...+|+.+++|...-
T Consensus 127 ~~~i~~irF~kPV~pGD~L~~ea~v~~~~~---------------------~~~~v~~~--~~v~g~~V~ege~~~ 179 (185)
T PRK04424 127 LTGVANIRFKRPVKLGERVVAKAEVVRKKG---------------------NKYIVEVK--SYVGDELVFRGKFIM 179 (185)
T ss_pred EEEeeeEEEccCCCCCCEEEEEEEEEEccC---------------------CEEEEEEE--EEECCEEEEEEEEEE
Confidence 345679999999999999999998886432 12222222 335788888887654
No 99
>cd03444 Thioesterase_II_repeat1 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=67.86 E-value=30 Score=28.08 Aligned_cols=57 Identities=11% Similarity=-0.037 Sum_probs=44.5
Q ss_pred EEEeEeeeeeEccccCCCCEEEEEEEEEEeCCeEEEEEEEEEECCCCcEEEEEEEEEE
Q 017534 140 IWVTARMHIEIYKYPAWSDVVEIETWCQSEGRIGTRRDWILKDYATGEVIGRATSKWV 197 (370)
Q Consensus 140 ~wVv~r~~Iey~r~p~~gD~V~I~Twv~~~~r~~~~R~f~I~d~~~Gevla~a~s~wV 197 (370)
.-.-..+.|.|+.++...|=+..+.+....+.-+..-+=.|++ ++|+++|....+.+
T Consensus 47 ~~aSldhsi~Fh~~~~~~~W~l~~~~~~~~~~gr~~~~~~l~~-~~G~LvAs~~Q~~l 103 (104)
T cd03444 47 ASASLDHAIWFHRPFRADDWLLYEQRSPRAGNGRGLVEGRIFT-RDGELVASVAQEGL 103 (104)
T ss_pred ceEeeeEEEEEeCCCCCCceEEEEEECccccCCeeEEEEEEEC-CCCCEEEEEEEeee
Confidence 3456778899999998888888888888876555555568999 89999998877644
No 100
>cd03452 MaoC_C MaoC_C The C-terminal hot dog fold of the MaoC (monoamine oxidase C) dehydratase regulatory protein. Orthologs of MaoC include PaaZ [Escherichia coli] and PaaN [Pseudomonas putida], which are putative ring-opening enzymes involved in phenylacetic acid degradation. The C-terminal domain of MaoC has sequence similarity to (R)-specific enoyl-CoA hydratase,Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. MaoC also has an N-terminal PutA domain like that found in the E. coli PutA proline dehydrogenase and other members of the aldehyde dehydrogenase family.
Probab=67.39 E-value=25 Score=30.06 Aligned_cols=57 Identities=5% Similarity=-0.046 Sum_probs=38.6
Q ss_pred EEEEeccccCCCCEEEEEEEeeccCCCcccccccCCCCCCcccCCCCCceEEEEEEEECCCCcEEEEEEEEEE
Q 017534 293 ITLDYRRECQQDDVVDSLTSAEPFEDAEPVSKLQGTNGSPAITGDKEDNHQFLHLLRLSGDGSEINRGRSVWR 365 (370)
Q Consensus 293 ~~i~Y~~e~~~gd~v~v~t~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~l~~~~dG~~ia~~~t~W~ 365 (370)
.++.|++|++.||+|.+...+...-.+ . ++ ....+.+...+ .+.+|+++..++..+.
T Consensus 81 ~~~rf~~PV~~GDtl~~~~~V~~~~~~-------~-~~-------~~~~v~~~~~~-~nq~g~~V~~~~~~~~ 137 (142)
T cd03452 81 ENLRFLEPVYPGDTIQVRLTCKRKIPR-------D-GQ-------DYGVVRWDAEV-TNQNGELVASYDILTL 137 (142)
T ss_pred ceEEECCCCCCCCEEEEEEEEEEEeec-------C-CC-------CcEEEEEEEEE-EecCCCEEEEEEehHe
Confidence 499999999999999999888754210 0 00 11234555556 4678999998886543
No 101
>cd01288 FabZ FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid biosynthesis pathway.
Probab=67.31 E-value=27 Score=28.70 Aligned_cols=52 Identities=10% Similarity=0.032 Sum_probs=37.8
Q ss_pred eEEEEEEeccccCCCCEEEEEEEeeccCCCcccccccCCCCCCcccCCCCCceEEEEEEEECCCCcEEEEEEEEE
Q 017534 290 LQTITLDYRRECQQDDVVDSLTSAEPFEDAEPVSKLQGTNGSPAITGDKEDNHQFLHLLRLSGDGSEINRGRSVW 364 (370)
Q Consensus 290 l~~~~i~Y~~e~~~gd~v~v~t~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~l~~~~dG~~ia~~~t~W 364 (370)
..--++.|++++..||.+.+..++...++ ....+.-.+ ..+|+++++|+-.-
T Consensus 77 ~~~~~~kf~~pv~pgd~l~i~~~v~~~~~---------------------~~~~~~~~~--~~~g~~v~~~~~~~ 128 (131)
T cd01288 77 AGIDKARFRKPVVPGDQLILEVELLKLRR---------------------GIGKFKGKA--YVDGKLVAEAELMF 128 (131)
T ss_pred eeecccEEccccCCCCEEEEEEEEEEeeC---------------------CEEEEEEEE--EECCEEEEEEEEEE
Confidence 44578999999999999999998876432 234445445 34789999987653
No 102
>COG1946 TesB Acyl-CoA thioesterase [Lipid metabolism]
Probab=66.06 E-value=1.4e+02 Score=29.32 Aligned_cols=172 Identities=13% Similarity=0.087 Sum_probs=96.6
Q ss_pred EEeEeeeeeEccccCCCCEEEEEEEEEEeCCeEEEEEEEEEECCCCcEEEEEEEEEEEEe-----CCCCceecCCHHHHH
Q 017534 141 WVTARMHIEIYKYPAWSDVVEIETWCQSEGRIGTRRDWILKDYATGEVIGRATSKWVMMN-----QDTRRLQKVSDDVRE 215 (370)
Q Consensus 141 wVv~r~~Iey~r~p~~gD~V~I~Twv~~~~r~~~~R~f~I~d~~~Gevla~a~s~wV~vD-----~~trRp~rip~e~~e 215 (370)
-++..++.-|.+|-.-.+.|.-.+...+-|+.+..|.-..+ .+|++|..+...+-.=+ .++--.++-|+.+..
T Consensus 55 r~vhSlh~yFl~pgd~~~pi~y~Ve~lRdG~sfs~rrV~ai--Q~g~~If~~~ASF~~~e~g~eHq~~mP~vp~Pe~~~~ 132 (289)
T COG1946 55 RVVHSLHSYFLRPGDPEQPIIYDVERLRDGRSFSTRRVDAI--QHGKLIFSATASFQVPEEGFEHQETMPAVPPPEGLPS 132 (289)
T ss_pred CCcceehhhhcCCCCcCCceEEEEEeccCCCceEeEEEEEE--ECCEEEEEEEeeccCCCCCchhhhcCCCCCCCccCcc
Confidence 46778888899999999999999999999999998887776 68999999888765411 112122333332211
Q ss_pred ------HHhhcCcccccccCCccCccccccCCCCC--Cccc-ceeeeeeeecccCcCCcccchhhHHHHHHHhCCcc---
Q 017534 216 ------EYLVFCPRELRLAFPEENSSSSRKISKLE--DPAQ-YSRLGLIPRRADLDMNQHVNNVTYIGWLLESMPQD--- 283 (370)
Q Consensus 216 ------~~~~~~~~~~~l~~p~e~~~~~~ki~~~~--~~~~-~~~~~~~Vr~sDiD~ngHVNN~~Y~~w~~~~~~~~--- 283 (370)
.+....|+..+..+..+-...++.++..+ .... .....+.||..+-=.+-..=+..-+.|+.|.-..+
T Consensus 133 ~~~~~~~~~~~~p~~~~~~~~~~~pie~R~~~~~~~~~~~k~~~~~~vWira~~~~pdd~~~~~~lLay~SD~~ll~tal 212 (289)
T COG1946 133 ETQIAQKLLPHLPEIVRAKFELERPIEIRPVNLTNPFSGDKSSPQQQVWIRARGELPDDPRLHQALLAYLSDFTLLDTAL 212 (289)
T ss_pred hhHHHHhhhhhcchhhhhhhccccceeEEecccCCccccccCCcceeEEEEcCCCCCCCHHHHHHHHHHhccchhhhhhh
Confidence 22222222111111000000011111100 0000 11245677777666666666666777776653111
Q ss_pred ------ccc-ccce--EEEEEEeccccCCCCEEEEEEEee
Q 017534 284 ------VID-THEL--QTITLDYRRECQQDDVVDSLTSAE 314 (370)
Q Consensus 284 ------~~~-~~~l--~~~~i~Y~~e~~~gd~v~v~t~v~ 314 (370)
++. ...+ ..+.+-|.+|+..+|.+.-.....
T Consensus 213 ~~Hg~~~~~~~~~~aSLDHs~wFhrp~~~ddWlLy~~~sp 252 (289)
T COG1946 213 QPHGLGFLTPGIQVASLDHSMWFHRPFRLDDWLLYAQESP 252 (289)
T ss_pred ccCCCccccCcceEeeccceEEEeccccCCCEEEEEeeCC
Confidence 111 1222 267899999999999887665543
No 103
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=64.90 E-value=26 Score=33.95 Aligned_cols=55 Identities=11% Similarity=0.015 Sum_probs=48.8
Q ss_pred EEeEeeeeeEccccCCCCEEEEEEEEEEeCCeEEEEEEEEEECCCCcEEEEEEEEEE
Q 017534 141 WVTARMHIEIYKYPAWSDVVEIETWCQSEGRIGTRRDWILKDYATGEVIGRATSKWV 197 (370)
Q Consensus 141 wVv~r~~Iey~r~p~~gD~V~I~Twv~~~~r~~~~R~f~I~d~~~Gevla~a~s~wV 197 (370)
.++..+++-|.+|...+..|+.++....-||.+..|.-..+ ++|++|.++...+-
T Consensus 55 ~~~hSlh~~Fl~pg~~~~pi~y~Ve~lRdGRSfstr~V~a~--Q~g~~if~~~~sF~ 109 (286)
T PRK10526 55 RLVHSFHSYFLRPGDSQKPIIYDVETLRDGNSFSARRVAAI--QNGKPIFYMTASFQ 109 (286)
T ss_pred CCceEEEEEcCCCCCCCCCEEEEEEEEeCCCceEeEEEEEE--ECCEEEEEEEEEec
Confidence 37888999999999999999999999999999999987777 58999988887665
No 104
>COG0764 FabA 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism]
Probab=63.15 E-value=97 Score=27.22 Aligned_cols=61 Identities=11% Similarity=0.022 Sum_probs=46.7
Q ss_pred eEEEeEeeeeeEccccCCCCEEEEEEEEEEeC-CeEEEEEEEEEECCCCcEEEEEEEEEEEEeC
Q 017534 139 LIWVTARMHIEIYKYPAWSDVVEIETWCQSEG-RIGTRRDWILKDYATGEVIGRATSKWVMMNQ 201 (370)
Q Consensus 139 l~wVv~r~~Iey~r~p~~gD~V~I~Twv~~~~-r~~~~R~f~I~d~~~Gevla~a~s~wV~vD~ 201 (370)
+...+.=-+.+|+++..-||.+.++......+ +....-.-... -+|+++++|+...+.++.
T Consensus 85 ~~~~~gid~~kF~~~V~PGd~l~l~~~~~~~~~~~~~~~~~~a~--Vdg~~v~~a~~~~~~~~~ 146 (147)
T COG0764 85 LGYFLGIDNAKFKRPVLPGDQLELEVKLLKSRRLGIGKAKGVAT--VDGKVVAEAELLFAGVEK 146 (147)
T ss_pred EEEEEEecceeecCccCCCCEEEEEEEEEEecccceEEEEEEEE--ECCEEEEEEEEEEEEeec
Confidence 66667777899999999999999999988877 43333332333 589999999998887653
No 105
>cd03448 HDE_HSD HDE_HSD The R-hydratase-like hot dog fold of the 17-beta-hydroxysteriod dehydrogenase (HSD), and Hydratase-Dehydrogenase-Epimerase (HDE) proteins. Other enzymes with this fold include MaoC dehydratase, and the fatty acid synthase beta subunit.
Probab=60.40 E-value=47 Score=27.88 Aligned_cols=47 Identities=11% Similarity=0.079 Sum_probs=31.8
Q ss_pred EeEeeeeeEccccCCCCEEEEEEEEEEeCCeEEEEEEEEEECCCCcEEEEEE
Q 017534 142 VTARMHIEIYKYPAWSDVVEIETWCQSEGRIGTRRDWILKDYATGEVIGRAT 193 (370)
Q Consensus 142 Vv~r~~Iey~r~p~~gD~V~I~Twv~~~~r~~~~R~f~I~d~~~Gevla~a~ 193 (370)
.+..+.++|.+|...||+|.++.|.. ++ ... |.+....+|+++..+.
T Consensus 71 ~~~~~~~rF~~PV~~gDtl~~~~~~~--~~-~v~--~~~~~~~~g~~v~~g~ 117 (122)
T cd03448 71 RFKAIKVRFSSPVFPGETLRTEMWKE--GN-RVI--FQTKVVERDVVVLSNG 117 (122)
T ss_pred eeEEEEEEEcCCccCCCEEEEEEEEe--CC-EEE--EEEEEccCCcEEEECC
Confidence 45667999999999999999999854 33 232 3333224677655543
No 106
>cd01287 FabA FabA, beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase: Bacterial protein of the type II, fatty acid synthase system that binds ACP and catalyzes both dehydration and isomerization reactions, apparently in the same active site. The FabA structure is a homodimer with two independent active sites located at the dimer interface. Each active site is tunnel-shaped and completely inaccessible to solvent. No metal ions or cofactors are required for ligand binding or catalysis.
Probab=58.13 E-value=1.3e+02 Score=26.33 Aligned_cols=94 Identities=13% Similarity=-0.134 Sum_probs=60.2
Q ss_pred CCCcCHHHHHHHHHHHHHHHHHHcCCCCCCccchhhhhhcCeEEEeEeeeeeEccccCCCC-EEEEEEEEEEeCC----e
Q 017534 98 NKTATVETIANLLQEVGCNHAQSVGFSTDGFATTTTMRKLHLIWVTARMHIEIYKYPAWSD-VVEIETWCQSEGR----I 172 (370)
Q Consensus 98 ~Ghv~~~~yl~~~qea~~~~~~~lG~~~~~~~~~~~l~~~gl~wVv~r~~Iey~r~p~~gD-~V~I~Twv~~~~r----~ 172 (370)
+..+--.-.++.|-++...++-..|..... -.....++...--.++|+++..-|| +++++..+.+.+. .
T Consensus 49 ~pvmPG~L~iEamaQ~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~kfr~~v~Pgd~~l~~e~~i~~~~~~~~~~ 122 (150)
T cd01287 49 DPVMPGSLGLEAMIQLLQFYLIWLGLGTGV------DNPRFQGAPGGPGEWKYRGQITPHNKKVTYEVHIKEVGRDGPRP 122 (150)
T ss_pred CCcCchHHHHHHHHHHHHHHHhhccccccc------CcccceeEeccceEEEECccCcCCCEEEEEEEEEEEEEccCCcc
Confidence 444555567777777766655444432110 0012234445556799999999999 8999999999753 4
Q ss_pred EEEEEEEEEECCCCcEEEEEEEEEEEE
Q 017534 173 GTRRDWILKDYATGEVIGRATSKWVMM 199 (370)
Q Consensus 173 ~~~R~f~I~d~~~Gevla~a~s~wV~v 199 (370)
...-+-.++ -+|+++++|...-|.+
T Consensus 123 ~~~~~~~~~--vdg~~v~~a~~~~~~~ 147 (150)
T cd01287 123 YIIADASLW--VDGLRIYEAKDIAVRL 147 (150)
T ss_pred EEEEEEEEE--ECCEEEEEEEccEEEe
Confidence 444445566 4899999998766654
No 107
>TIGR01750 fabZ beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ. This enzyme, FabZ, shows overlapping substrate specificity with FabA with regard to chain length in fatty acid biosynthesis. FabZ works preferentially on shorter chains and is often designated (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase, although its actual specificity is broader. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains.
Probab=55.99 E-value=68 Score=27.03 Aligned_cols=49 Identities=12% Similarity=0.057 Sum_probs=35.2
Q ss_pred EEEEeccccCCCCEEEEEEEeeccCCCcccccccCCCCCCcccCCCCCceEEEEEEEECCCCcEEEEEEEEE
Q 017534 293 ITLDYRRECQQDDVVDSLTSAEPFEDAEPVSKLQGTNGSPAITGDKEDNHQFLHLLRLSGDGSEINRGRSVW 364 (370)
Q Consensus 293 ~~i~Y~~e~~~gd~v~v~t~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~l~~~~dG~~ia~~~t~W 364 (370)
-++.|+++++.||++++...+..... .-..+.-.+ ..+|+.++.|+..-
T Consensus 90 ~~~kF~~~v~pGd~l~i~~~i~~~~~---------------------~~~~~~~~~--~~~g~~va~~~~~~ 138 (140)
T TIGR01750 90 DKAKFRRPVVPGDQLILHAEFLKKRR---------------------KIGKFKGEA--TVDGKVVAEAEITF 138 (140)
T ss_pred ceeEECCccCCCCEEEEEEEEEEccC---------------------CEEEEEEEE--EECCEEEEEEEEEE
Confidence 48999999999999999888775321 123444444 24789999998753
No 108
>PF01575 MaoC_dehydratas: MaoC like domain; InterPro: IPR002539 The C terminus of the MaoC protein is found to share similarity with a wide variety of enzymes. All these enzymes contain multiple domains. This domain is found in parts of two enzymes that have been assigned dehydratase activities. A deletion mutant of the C-terminal 271 amino acids in Q02207 from SWISSPROT abolished its 2-enoyl-CoA hydratase activity, suggesting that this region may be a hydratase enzyme []. The maoC gene is part of a operon with maoA which is involved in the synthesis of monoamine oxidase [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1PN4_C 1PN2_B 1S9C_K 3OML_A 1Q6W_B 2B3M_A 3K67_B ....
Probab=55.57 E-value=26 Score=29.03 Aligned_cols=35 Identities=9% Similarity=-0.123 Sum_probs=27.9
Q ss_pred eEEEeEeeeeeEccccCCCCEEEEEEEEEEeCCeE
Q 017534 139 LIWVTARMHIEIYKYPAWSDVVEIETWCQSEGRIG 173 (370)
Q Consensus 139 l~wVv~r~~Iey~r~p~~gD~V~I~Twv~~~~r~~ 173 (370)
....+.+++++|.+|...||+|.++.++.+.....
T Consensus 74 ~~~~~~~~~~rF~~PV~~gdtl~~~~~v~~~~~~~ 108 (122)
T PF01575_consen 74 PPARLGRFNVRFRAPVFPGDTLTAEVEVTEKREGK 108 (122)
T ss_dssp ECEEEEEEEEEESS--BTTEEEEEEEEEEEEEEEE
T ss_pred cceEEEEEEEEEeccccCCCEEEEEEEEEEEEEcC
Confidence 35788899999999999999999999999855433
No 109
>PRK08190 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated
Probab=55.39 E-value=69 Score=33.36 Aligned_cols=58 Identities=12% Similarity=0.067 Sum_probs=41.3
Q ss_pred ceEEEEEEeccccCCCCEEEEEEEeeccCCCcccccccCCCCCCcccCCCCCceEEEEEEEECCCCcEEEEEEEEEEe
Q 017534 289 ELQTITLDYRRECQQDDVVDSLTSAEPFEDAEPVSKLQGTNGSPAITGDKEDNHQFLHLLRLSGDGSEINRGRSVWRK 366 (370)
Q Consensus 289 ~l~~~~i~Y~~e~~~gd~v~v~t~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~l~~~~dG~~ia~~~t~W~~ 366 (370)
.....++.|.+|++.||+|++..++..... + ..-..+.... .+.+|+++..+..++..
T Consensus 84 ~~~~~~~rF~~PV~~GDtl~~~~~V~~~~~-----------~--------~~~v~~~~~~-~nq~G~~V~~g~~~~l~ 141 (466)
T PRK08190 84 IYLGQSLRFRRPVRIGDTLTVTVTVREKDP-----------E--------KRIVVLDCRC-TNQDGEVVITGTAEVIA 141 (466)
T ss_pred EEEEEEEEEeCCcCCCCEEEEEEEEEEEEC-----------C--------CCEEEEEEEE-EeCCCCEEEEEEEEeec
Confidence 346789999999999999999988764211 1 1234455555 45789999888877654
No 110
>TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN. This family includes paaN genes from Pseudomonas, Sinorhizobium, Rhodopseudomonas, Escherichia, Deinococcus and Corynebacterium. Another homology family (TIGR02288) includes several other species.
Probab=54.95 E-value=37 Score=37.09 Aligned_cols=51 Identities=6% Similarity=0.006 Sum_probs=39.7
Q ss_pred eeeeEccccCCCCEEEEEEEEEEeC--C---e-EEEEEEEEEECCCCcEEEEEEEEEE
Q 017534 146 MHIEIYKYPAWSDVVEIETWCQSEG--R---I-GTRRDWILKDYATGEVIGRATSKWV 197 (370)
Q Consensus 146 ~~Iey~r~p~~gD~V~I~Twv~~~~--r---~-~~~R~f~I~d~~~Gevla~a~s~wV 197 (370)
.+++|.+|...||+|+++..+.+.. + . ....+..+.+ ++|+++.++..+.+
T Consensus 604 ~~~rF~~PV~~GDtl~~~~~V~e~~~~~~~~~g~v~~~~~v~n-q~G~~Vl~~~~~~l 660 (663)
T TIGR02278 604 ENLRFLEPVGPGDTIQVRLTVKRKTPRDEKTYGVVEWAAEVVN-QNGEPVATYDVLTL 660 (663)
T ss_pred ceEEEcCCCCCCCEEEEEEEEEEEEecCCCCceEEEEEEEEEc-CCCCEEEEEEEHHh
Confidence 4899999999999999999998752 1 1 3445567778 88999988876554
No 111
>COG3777 Uncharacterized conserved protein [Function unknown]
Probab=54.64 E-value=23 Score=33.91 Aligned_cols=168 Identities=14% Similarity=0.042 Sum_probs=98.4
Q ss_pred EeeeeeEccccCCCCEEEEEEEEEEe--------CCeEEEEEEEEEECCCCcEEEEEEEEEEEEeCCCCceecCCHHHHH
Q 017534 144 ARMHIEIYKYPAWSDVVEIETWCQSE--------GRIGTRRDWILKDYATGEVIGRATSKWVMMNQDTRRLQKVSDDVRE 215 (370)
Q Consensus 144 ~r~~Iey~r~p~~gD~V~I~Twv~~~--------~r~~~~R~f~I~d~~~Gevla~a~s~wV~vD~~trRp~rip~e~~e 215 (370)
..-.+.|+.|.+.|++.+..-.+..+ ...+..+.-.+ . ++|++|.+=.-+.|.-+..- ..|.-.+
T Consensus 81 a~G~l~f~~pl~lgqe~t~~e~Iq~i~ek~g~~g~ltfvT~~h~~-~-~~~~l~l~Err~ivY~n~~~----s~p~~~~- 153 (273)
T COG3777 81 AGGELVFHLPLRLGQEYTCHETIQYIEEKHGRSGELTFVTVPHVY-S-SPGQLCLFERRTIVYTNAPA----SKPAVKM- 153 (273)
T ss_pred ccceEEEecceecCceeehhHHHHHHHHhcccccceeEEecccee-c-cCcceeeeeeeeEEEecCCC----CCccccC-
Confidence 34567889999999988754433221 12233333233 3 68899888888888766542 2221000
Q ss_pred HHhhcCcccccccCCccCccccccCCCCCCcccceeeeeeeecccCcCCccc--chhhHHHHHHHhC----Cc-------
Q 017534 216 EYLVFCPRELRLAFPEENSSSSRKISKLEDPAQYSRLGLIPRRADLDMNQHV--NNVTYIGWLLESM----PQ------- 282 (370)
Q Consensus 216 ~~~~~~~~~~~l~~p~e~~~~~~ki~~~~~~~~~~~~~~~Vr~sDiD~ngHV--NN~~Y~~w~~~~~----~~------- 282 (370)
+. +.|. .++.+.-.|. -.+-+|||-+-.|+|. .|+-|..+++..= ..
T Consensus 154 ------s~----~~p~------~~w~~~~tpt----pvllfrYsaltfN~HrIHyD~~Yat~vEgYpgLVvhGPl~atll 213 (273)
T COG3777 154 ------SV----AEPN------GKWLKNFTPT----PVLLFRYSALTFNGHRIHYDAPYATYVEGYPGLVVHGPLIATLL 213 (273)
T ss_pred ------CC----CCCC------CchhhcCCCC----chheeehhhhccCceeeeccCcceeeccCCCCceecchHHHHHH
Confidence 00 1110 1111111111 1246799999999997 7888988877541 00
Q ss_pred -ccc---cccceEEEEEEeccccCCCCEEEEEEEeeccCCCcccccccCCCCCCcccCCCCCceEEEEEEEECCCCcEEE
Q 017534 283 -DVI---DTHELQTITLDYRRECQQDDVVDSLTSAEPFEDAEPVSKLQGTNGSPAITGDKEDNHQFLHLLRLSGDGSEIN 358 (370)
Q Consensus 283 -~~~---~~~~l~~~~i~Y~~e~~~gd~v~v~t~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~l~~~~dG~~ia 358 (370)
+.+ ....+++++-.=.+|++.++.+++......-| . .......+||.++.
T Consensus 214 l~~~~~~~pq~~~Rf~fR~L~p~f~~~~lti~~~l~~~g------------------------~--~~~w~~~~~~pv~m 267 (273)
T COG3777 214 LRAFQPFLPQPIRRFRFRNLSPAFPNETLTICGSLSGSG------------------------G--AELWTIRGDGPVAM 267 (273)
T ss_pred HHHhhhhccccchheeccccccccCCCCeeEeeEecCCC------------------------c--eEEEEecCCcchhh
Confidence 111 12347899989999999999999976654311 0 22233457788888
Q ss_pred EEEEEE
Q 017534 359 RGRSVW 364 (370)
Q Consensus 359 ~~~t~W 364 (370)
+|+..|
T Consensus 268 rarV~~ 273 (273)
T COG3777 268 RARVFF 273 (273)
T ss_pred eeeecC
Confidence 888655
No 112
>PRK11563 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional
Probab=53.83 E-value=41 Score=36.69 Aligned_cols=50 Identities=14% Similarity=0.186 Sum_probs=39.6
Q ss_pred eeeEccccCCCCEEEEEEEEEEeC--C----eEEEEEEEEEECCCCcEEEEEEEEEE
Q 017534 147 HIEIYKYPAWSDVVEIETWCQSEG--R----IGTRRDWILKDYATGEVIGRATSKWV 197 (370)
Q Consensus 147 ~Iey~r~p~~gD~V~I~Twv~~~~--r----~~~~R~f~I~d~~~Gevla~a~s~wV 197 (370)
+++|.+|...||+|+++..+.+.. + -....+..+.+ ++|+++.++....+
T Consensus 617 ~~rF~~PV~~GDtl~~~~~V~~~~~~~~~~~~~v~~~~~~~n-q~G~~V~~~~~~~l 672 (675)
T PRK11563 617 NLRFLTPVKPGDTIQVRLTCKRKTPRRQAPYGVVRWDVEVTN-QDGELVATYDILTL 672 (675)
T ss_pred eEEEcCCCCCCCEEEEEEEEEEEEecCCCCceEEEEEEEEEE-CCCCEEEEEEEHHh
Confidence 799999999999999999998863 1 23455667788 89999988876543
No 113
>PF14539 DUF4442: Domain of unknown function (DUF4442); PDB: 1YOC_B 1SH8_B.
Probab=51.75 E-value=39 Score=28.66 Aligned_cols=92 Identities=9% Similarity=0.095 Sum_probs=47.8
Q ss_pred eeeeeeecccCcCCcccchhhHHHHHHHh--------CCcccccccceEEEEEEeccccCCCCEEEEEEEeeccCCCccc
Q 017534 251 RLGLIPRRADLDMNQHVNNVTYIGWLLES--------MPQDVIDTHELQTITLDYRRECQQDDVVDSLTSAEPFEDAEPV 322 (370)
Q Consensus 251 ~~~~~Vr~sDiD~ngHVNN~~Y~~w~~~~--------~~~~~~~~~~l~~~~i~Y~~e~~~gd~v~v~t~v~~~~~~~~~ 322 (370)
...+..++.-...+|-+.-..-+..++-+ ++.++ -..++.++|+|+++..- .|...+.+..- .
T Consensus 32 ~v~l~~~~~~~N~~gt~h~gAl~~laE~~~g~~~~~~l~~~~--~~~~k~~~i~f~kpa~g--~v~a~~~~~~e----~- 102 (132)
T PF14539_consen 32 VVRLPLRPRNRNHVGTIHAGALFTLAEPAYGLLLMSNLGDKY--RVWDKSAEIDFLKPARG--DVTATAELTEE----Q- 102 (132)
T ss_dssp EEEE-S-CCGB-TTSSB-HHHHHHHHHCHHHHHHHHHS-TTE--EEEEEEEEEEE-S---S---EEEEEE-TCC----H-
T ss_pred EEEEcCCccccCcCcchHHHHHHHHHHHHHHHHHHHhCCCcE--EEEEEeeEEEEEeccCC--cEEEEEEcCHH----H-
Confidence 45667777788888888777666655433 33321 12468999999999643 34444444320 0
Q ss_pred ccccCCCCCCcccCCCCCceEEEEEEEECCCCcEEEEEEEEEE
Q 017534 323 SKLQGTNGSPAITGDKEDNHQFLHLLRLSGDGSEINRGRSVWR 365 (370)
Q Consensus 323 ~~~~~~~g~~~~~~~~~~~~~~~h~l~~~~dG~~ia~~~t~W~ 365 (370)
+ +. .....+.-.+ .+.+|+++++++-.|-
T Consensus 103 --~-~~----------~~~~~~~v~i-~D~~G~~Va~~~~t~~ 131 (132)
T PF14539_consen 103 --I-GE----------RGELTVPVEI-TDADGEVVAEATITWY 131 (132)
T ss_dssp --C-CH----------EEEEEEEEEE-EETTC-EEEEEEEEEE
T ss_pred --h-CC----------CcEEEEEEEE-EECCCCEEEEEEEEEE
Confidence 0 00 1234444445 4678999999999994
No 114
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=50.75 E-value=36 Score=34.42 Aligned_cols=66 Identities=12% Similarity=0.101 Sum_probs=55.4
Q ss_pred eeeeecccCcCCcccchhhHHHHHHHhCCccccc----ccceEEEEEEeccccCCCCEEEEEEEeeccCC
Q 017534 253 GLIPRRADLDMNQHVNNVTYIGWLLESMPQDVID----THELQTITLDYRRECQQDDVVDSLTSAEPFED 318 (370)
Q Consensus 253 ~~~Vr~sDiD~ngHVNN~~Y~~w~~~~~~~~~~~----~~~l~~~~i~Y~~e~~~gd~v~v~t~v~~~~~ 318 (370)
.+.|...-++.+|-+-|.++...+.++.-..+.. .-.+..+.+.|.+|++.++.+.+..++-..|+
T Consensus 336 t~~V~P~M~n~~Gtis~gv~~~ll~e~~qr~l~k~~~~niiIE~i~iyflk~vqid~~l~I~prIl~~gR 405 (432)
T COG4109 336 TVEVEPQMINSLGTISNGVFTELLTEVVQRVLRKKKKRNIIIENITIYFLKPVQIDSVLEIYPRILEEGR 405 (432)
T ss_pred EEEechhhccccccchHHHHHHHHHHHHHHHHHHhcCCceEEEeeeeeeecceecccEEEEeeeeecccc
Confidence 3669999999999999999999999886443322 23678999999999999999999999887664
No 115
>PF13622 4HBT_3: Thioesterase-like superfamily; PDB: 2PIM_A 3RQB_A 3CJY_A 3RD7_A 3BBJ_B.
Probab=48.89 E-value=1.4e+02 Score=27.66 Aligned_cols=54 Identities=15% Similarity=0.160 Sum_probs=38.6
Q ss_pred eEeeeeeEcccc-CCCCEEEEEEEEEEeCCeEEEEEEEEEECCCCcEEEEEEEEEE
Q 017534 143 TARMHIEIYKYP-AWSDVVEIETWCQSEGRIGTRRDWILKDYATGEVIGRATSKWV 197 (370)
Q Consensus 143 v~r~~Iey~r~p-~~gD~V~I~Twv~~~~r~~~~R~f~I~d~~~Gevla~a~s~wV 197 (370)
...+.|.|++.| .-++=+.++++....+.-.+.-+-+|+| ++|+++|.+....+
T Consensus 200 tld~ti~f~~~p~~~~~Wl~~~~~~~~~~~Gr~~~~~~l~d-~~G~lvA~~~Q~~l 254 (255)
T PF13622_consen 200 TLDHTIHFHRLPFDGDEWLLLEARSPRAGNGRALMEGRLWD-EDGRLVASSRQEAL 254 (255)
T ss_dssp EEEEEEEECSHCCTTTS-EEEEEEEEEEETTEEEEEEEEEE-TTS-EEEEEEEEEE
T ss_pred cceeEEEEEeCCccCCceEEEEEEEeEeCCCEEEEEEEEEC-CCCCEEEEEEEEee
Confidence 677888875544 4588899999887765444555668999 99999999887654
No 116
>cd03450 NodN NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.
Probab=46.96 E-value=1.9e+02 Score=25.06 Aligned_cols=30 Identities=7% Similarity=-0.345 Sum_probs=24.7
Q ss_pred EEEeEeeeeeEccccCCCCEEEEEEEEEEe
Q 017534 140 IWVTARMHIEIYKYPAWSDVVEIETWCQSE 169 (370)
Q Consensus 140 ~wVv~r~~Iey~r~p~~gD~V~I~Twv~~~ 169 (370)
++.+...+++|.+|...||+|+++..+.+.
T Consensus 84 ~~~~g~~~~rF~~PV~~GDtl~~~~~V~~~ 113 (149)
T cd03450 84 GVNYGLDKVRFPAPVPVGSRVRGRFTLLSV 113 (149)
T ss_pred EEEeeccEEEeCcceeCCcEEEEEEEEEEE
Confidence 344455689999999999999999998874
No 117
>cd00493 FabA_FabZ FabA/Z, beta-hydroxyacyl-acyl carrier protein (ACP)-dehydratases: One of several distinct enzyme types of the dissociative, type II, fatty acid synthase system (found in bacteria and plants) required to complete successive cycles of fatty acid elongation. The third step of the elongation cycle, the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, is catalyzed by FabA or FabZ. FabA is bifunctional and catalyzes an additional isomerization reaction of trans-2-acyl-ACP to cis-3-acyl-ACP, an essential reaction to unsaturated fatty acid synthesis. FabZ is the primary dehydratase that participates in the elongation cycles of saturated as well as unsaturated fatty acid biosynthesis, whereas FabA is more active in the dehydration of beta-hydroxydecanoyl-ACP. The FabA structure is homodimeric with two independent active sites located at the dimer interface.
Probab=46.70 E-value=94 Score=25.28 Aligned_cols=49 Identities=10% Similarity=0.070 Sum_probs=35.5
Q ss_pred eEEEEEEeccccCCCCEEEEEEEeeccCCCcccccccCCCCCCcccCCCCCceEEEEEEEECCCCcEEEEEE
Q 017534 290 LQTITLDYRRECQQDDVVDSLTSAEPFEDAEPVSKLQGTNGSPAITGDKEDNHQFLHLLRLSGDGSEINRGR 361 (370)
Q Consensus 290 l~~~~i~Y~~e~~~gd~v~v~t~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~l~~~~dG~~ia~~~ 361 (370)
...-++.|++++..||.+++..++...+. .-..+.-.+.. +|+++++++
T Consensus 78 ~~~~~~kf~~~v~pgd~l~i~~~i~~~~~---------------------~~~~~~~~~~~--~g~~v~~~~ 126 (131)
T cd00493 78 AGVRKVKFRGPVLPGDTLTLEVELLKVRR---------------------GLGKFDGRAYV--DGKLVAEAE 126 (131)
T ss_pred EEcceeEECCCcCCCCEEEEEEEEEEeeC---------------------CEEEEEEEEEE--CCEEEEEEE
Confidence 44568999999999999999888876421 13445555543 589999887
No 118
>cd03448 HDE_HSD HDE_HSD The R-hydratase-like hot dog fold of the 17-beta-hydroxysteriod dehydrogenase (HSD), and Hydratase-Dehydrogenase-Epimerase (HDE) proteins. Other enzymes with this fold include MaoC dehydratase, and the fatty acid synthase beta subunit.
Probab=46.08 E-value=1.1e+02 Score=25.60 Aligned_cols=25 Identities=4% Similarity=0.138 Sum_probs=21.8
Q ss_pred ceEEEEEEeccccCCCCEEEEEEEe
Q 017534 289 ELQTITLDYRRECQQDDVVDSLTSA 313 (370)
Q Consensus 289 ~l~~~~i~Y~~e~~~gd~v~v~t~v 313 (370)
.+...++.|++|++.||+|.+..+.
T Consensus 71 ~~~~~~~rF~~PV~~gDtl~~~~~~ 95 (122)
T cd03448 71 RFKAIKVRFSSPVFPGETLRTEMWK 95 (122)
T ss_pred eeEEEEEEEcCCccCCCEEEEEEEE
Confidence 4678899999999999999997763
No 119
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=45.05 E-value=1.1e+02 Score=28.95 Aligned_cols=56 Identities=9% Similarity=-0.068 Sum_probs=41.3
Q ss_pred EeEeeeeeEccccCCCCEEEEEEEEEEeCCeEEEEEEEEEECCCCcEEEEEEEEEEE
Q 017534 142 VTARMHIEIYKYPAWSDVVEIETWCQSEGRIGTRRDWILKDYATGEVIGRATSKWVM 198 (370)
Q Consensus 142 Vv~r~~Iey~r~p~~gD~V~I~Twv~~~~r~~~~R~f~I~d~~~Gevla~a~s~wV~ 198 (370)
.-..+.|.|+++...+|=+..+++....+.-...-+=.|+| ++|+++|.+...-++
T Consensus 215 aSldhtv~fh~~~~~~~W~l~~~~s~~~~~Grg~~~~~l~d-~~G~lvAs~~Qe~l~ 270 (271)
T TIGR00189 215 ASLDHSIWFHRPFRADDWLLYKCSSPSASGSRGLVEGKIFT-RDGVLIASTVQEGLV 270 (271)
T ss_pred EeeeeeEEEeCCCCCCeeEEEEEEeccccCCceEEEEEEEC-CCCCEEEEEEeeeec
Confidence 46677888989877899999888877654323333357999 999999998776543
No 120
>PLN02864 enoyl-CoA hydratase
Probab=44.13 E-value=95 Score=30.55 Aligned_cols=51 Identities=8% Similarity=-0.002 Sum_probs=36.1
Q ss_pred EeEeeeeeEccccCCCCEEEEEEEEEEeCCeEEEEEEEEEECCCCcEEEEEEEEEE
Q 017534 142 VTARMHIEIYKYPAWSDVVEIETWCQSEGRIGTRRDWILKDYATGEVIGRATSKWV 197 (370)
Q Consensus 142 Vv~r~~Iey~r~p~~gD~V~I~Twv~~~~r~~~~R~f~I~d~~~Gevla~a~s~wV 197 (370)
.+.+++++|.+|...||+|.++.|.. ++. .. |++...++|+++..|..+..
T Consensus 254 ~~~~~~~rF~~PV~pGdtl~~~~~~~--~~~-v~--~~~~~~~~g~~vl~G~a~~~ 304 (310)
T PLN02864 254 AVKTISGRFLLHVYPGETLVTEMWLE--GLR-VI--YQTKVKERNKAVLSGYVDLR 304 (310)
T ss_pred eEEEEEEEEcCCccCCCEEEEEEEeC--CCE-EE--EEEEEecCCeEEEEEEEEEe
Confidence 56788999999999999999999864 322 22 33332267888888766543
No 121
>COG1946 TesB Acyl-CoA thioesterase [Lipid metabolism]
Probab=43.01 E-value=2.7e+02 Score=27.33 Aligned_cols=103 Identities=9% Similarity=-0.019 Sum_probs=66.1
Q ss_pred EEEeeecCCCCCCCcCHHHHHHHHHHHHHHHHH--HcCCCCCCccchhhhhhcCeEEEeEeeeeeEccccCCCCEEEEEE
Q 017534 87 KFIVRCYEVGINKTATVETIANLLQEVGCNHAQ--SVGFSTDGFATTTTMRKLHLIWVTARMHIEIYKYPAWSDVVEIET 164 (370)
Q Consensus 87 ~~~Vr~~D~D~~Ghv~~~~yl~~~qea~~~~~~--~lG~~~~~~~~~~~l~~~gl~wVv~r~~Iey~r~p~~gD~V~I~T 164 (370)
.+-||...-=++-..-+..++-|+-|--.-... ..|.+ +...++.-+-....|-|+||.+.+|=|.-.+
T Consensus 179 ~vWira~~~~pdd~~~~~~lLay~SD~~ll~tal~~Hg~~---------~~~~~~~~aSLDHs~wFhrp~~~ddWlLy~~ 249 (289)
T COG1946 179 QVWIRARGELPDDPRLHQALLAYLSDFTLLDTALQPHGLG---------FLTPGIQVASLDHSMWFHRPFRLDDWLLYAQ 249 (289)
T ss_pred eEEEEcCCCCCCCHHHHHHHHHHhccchhhhhhhccCCCc---------cccCcceEeeccceEEEeccccCCCEEEEEe
Confidence 344555544445555566667777764422111 12332 1234566677778899999999999998888
Q ss_pred EEEEeCCeEEEEEEEEEECCCCcEEEEEEEEEEEE
Q 017534 165 WCQSEGRIGTRRDWILKDYATGEVIGRATSKWVMM 199 (370)
Q Consensus 165 wv~~~~r~~~~R~f~I~d~~~Gevla~a~s~wV~v 199 (370)
........+..-+=.|++ ++|+++|......++-
T Consensus 250 ~sp~A~~~rgl~~G~lf~-r~G~LiA~~~QEG~~r 283 (289)
T COG1946 250 ESPSASGGRGLVRGQLFD-RDGQLIASVVQEGLIR 283 (289)
T ss_pred eCCcccCCcceeeeEEEc-CCCCEEEEEeeeEEEe
Confidence 766654333333347888 9999999988887764
No 122
>PF09500 YiiD_Cterm: Putative thioesterase (yiiD_Cterm); InterPro: IPR012660 This entry consists of a broadly distributed uncharacterised domain found often as a standalone protein. The member from is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an N-terminal acetyltransferase domain (IPR000182 from INTERPRO). The function of these proteins are unknown. ; PDB: 1T82_C.
Probab=42.90 E-value=2.3e+02 Score=24.78 Aligned_cols=88 Identities=17% Similarity=0.157 Sum_probs=53.4
Q ss_pred CCCCCCCcCHHHHHHHHHHHHHHHH----HHcCCCCCCccchhhhhhcCeEEEeEeeeeeEccccCCCCEEEEEEEEE--
Q 017534 94 EVGINKTATVETIANLLQEVGCNHA----QSVGFSTDGFATTTTMRKLHLIWVTARMHIEIYKYPAWSDVVEIETWCQ-- 167 (370)
Q Consensus 94 D~D~~Ghv~~~~yl~~~qea~~~~~----~~lG~~~~~~~~~~~l~~~gl~wVv~r~~Iey~r~p~~gD~V~I~Twv~-- 167 (370)
.++..|.+.=.++...+--+++..+ ++.|+. ---||.+.+|+|.+|.. +| ++.++...
T Consensus 39 N~N~~~T~FgGSl~slatLaGW~lv~l~l~e~~~~--------------~~IVi~~~~i~Y~~Pv~-~d-~~A~~~~~~~ 102 (144)
T PF09500_consen 39 NINHHGTMFGGSLYSLATLAGWGLVWLQLKEAGLN--------------GDIVIADSNIRYLKPVT-GD-FTARCSLPEP 102 (144)
T ss_dssp GB-TTSSB-HHHHHHHHHHHHHHHHHHHHHHHT-----------------EEEEEEEEEEE-S----S---EEEEE----
T ss_pred CcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhCCC--------------CcEEEEeCceEEcCCCC-CC-cEEEEecccc
Confidence 3456677777778777777766554 333432 35799999999999886 44 44455444
Q ss_pred -----------EeCCeEEEEEEEEEECCCCcEEEEEEEEEEEE
Q 017534 168 -----------SEGRIGTRRDWILKDYATGEVIGRATSKWVMM 199 (370)
Q Consensus 168 -----------~~~r~~~~R~f~I~d~~~Gevla~a~s~wV~v 199 (370)
.-+|......-.|++ +|+++++....+|.+
T Consensus 103 ~~~~~~~~~l~~~grari~l~~~i~~--~~~~~a~f~G~yv~l 143 (144)
T PF09500_consen 103 EDWERFLQTLARGGRARITLEVEIYS--GGELAAEFTGRYVAL 143 (144)
T ss_dssp ---S---GGGGCTS-EEEEEEEEEEE--TTEEEEEEEEEEEEE
T ss_pred chhHHHHHHHHcCCcEEEEEEEEEEE--CCEEEEEEEEEEEEE
Confidence 234667777778885 889999999998875
No 123
>PLN02868 acyl-CoA thioesterase family protein
Probab=40.44 E-value=84 Score=31.96 Aligned_cols=55 Identities=11% Similarity=-0.038 Sum_probs=46.5
Q ss_pred EeEeeeeeEccccCCCCEEEEEEEEEEeCCeEEEEEEEEEECCCCcEEEEEEEEEEE
Q 017534 142 VTARMHIEIYKYPAWSDVVEIETWCQSEGRIGTRRDWILKDYATGEVIGRATSKWVM 198 (370)
Q Consensus 142 Vv~r~~Iey~r~p~~gD~V~I~Twv~~~~r~~~~R~f~I~d~~~Gevla~a~s~wV~ 198 (370)
.+..+++.|.++...+..|++++...+-||.+..|.-..+ ++|++++++...+..
T Consensus 182 ~~~s~~~~Fl~~~~~~~pv~~~V~~lr~Grs~~~r~v~~~--Q~g~~~~~~~~sf~~ 236 (413)
T PLN02868 182 LVHSLHAYFLLVGDINLPIIYQVERIRDGHNFATRRVDAI--QKGKVIFTLFASFQK 236 (413)
T ss_pred CceEeeeeecCCCCCCCCEEEEEEEEcCCCceEeeEEEEE--ECCeeEEEEeecccc
Confidence 5678899999998888889999999999999999988887 589998888766543
No 124
>COG2030 MaoC Acyl dehydratase [Lipid metabolism]
Probab=40.13 E-value=1.5e+02 Score=26.02 Aligned_cols=60 Identities=7% Similarity=-0.003 Sum_probs=41.3
Q ss_pred ceEEEEEEeccccCCCCEEEEEEEeeccCCCcccccccCCCCCCcccCCCCCceEEEEEEEECCCCcEEEEEEEEEEe
Q 017534 289 ELQTITLDYRRECQQDDVVDSLTSAEPFEDAEPVSKLQGTNGSPAITGDKEDNHQFLHLLRLSGDGSEINRGRSVWRK 366 (370)
Q Consensus 289 ~l~~~~i~Y~~e~~~gd~v~v~t~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~l~~~~dG~~ia~~~t~W~~ 366 (370)
.+..-++.|.+|++.||+|...+++...... .+ .| -....+.. .+..|.++..+...|..
T Consensus 95 ~~g~~~vRF~~PV~~Gdtl~~~~~v~~~~~~------~~-~G----------~v~~~~~~-~~~~g~~v~~~~~~~~~ 154 (159)
T COG2030 95 NLGGDEVRFVKPVFPGDTLRARVEVLDKRPS------KS-RG----------LVTLRLET-VNQEGELVLTLEATVLV 154 (159)
T ss_pred eccccceEecCCCCCCCEEEEEEEEEEeeec------CC-ce----------EEEEEEEE-EccCCcEEEEEEEeEeE
Confidence 4567889999999999999998887653210 00 12 33445555 56778888888777754
No 125
>PF02551 Acyl_CoA_thio: Acyl-CoA thioesterase; InterPro: IPR003703 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH). They consequently have the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. They may also be involved in the metabolic regulation of peroxisome proliferation. Thioesters play a central role in cells as they participate in metabolism, membrane synthesis, signal transduction, and gene regulation. Thioesterases catalyse the hydrolysis of thioesters to the thiol and carboxylic acid components. Many thioesterases have a hot dog fold, including YciA from Escherichia coli and its close sequence homologue HI0827 from Haemophilus influenzae (HiYciA) []. In Helicobacter pylori, YbgC also belongs to the hot-dog family of proteins, with a epsilongamma tetrameric arrangement []. YbgC proteins are bacterial acyl-CoA thioesterases associated with the Tol-Pal system. This system is important for cell envelope integrity and is part of the cell division machinery. However, the E. coli thioesterase II reveals a new tertiary fold: a 'double hot dog'. It has an internal repeat with a basic unit that is structurally similar to the recently described beta-hydroxydecanoyl thiol ester dehydrase []. ; GO: 0016291 acyl-CoA thioesterase activity, 0006637 acyl-CoA metabolic process; PDB: 1C8U_B 1TBU_B 3U0A_B.
Probab=39.28 E-value=1.9e+02 Score=25.08 Aligned_cols=53 Identities=8% Similarity=-0.132 Sum_probs=35.8
Q ss_pred eEeeeeeEccccCCCCEEEEEEEEEEeCCeEEEEEEEEE-ECCCCcEEEEEEEEE
Q 017534 143 TARMHIEIYKYPAWSDVVEIETWCQSEGRIGTRRDWILK-DYATGEVIGRATSKW 196 (370)
Q Consensus 143 v~r~~Iey~r~p~~gD~V~I~Twv~~~~r~~~~R~f~I~-d~~~Gevla~a~s~w 196 (370)
-....|=|++|...+|-|.-.+...........++=.++ + ++|+++|.+..+.
T Consensus 77 SlDHs~wFHrpfr~ddWlLY~~~sp~A~~~Rgl~~G~~f~~-q~G~Lvas~~QEG 130 (131)
T PF02551_consen 77 SLDHSMWFHRPFRADDWLLYAIESPSASGGRGLVRGRFFDT-QDGELVASVVQEG 130 (131)
T ss_dssp EEEEEEEE-S--BTTS-EEEEEEEEEEETTEEEEEECCEEE-CTTEEEEEEEEEE
T ss_pred ecceeEEEcCCCCCCCCEEEEEEcCccccCcccccCceEec-CCCCEEEEEecCC
Confidence 777788999999999999988876554333333344677 5 8999999977654
No 126
>PRK13693 (3R)-hydroxyacyl-ACP dehydratase subunit HadB; Provisional
Probab=38.54 E-value=2.5e+02 Score=24.00 Aligned_cols=51 Identities=10% Similarity=0.093 Sum_probs=34.2
Q ss_pred EeeeeeEccccCCC-C----EEEEEEEEEEeC--CeEEEEEEEEEECCCCcEEEEEEEE
Q 017534 144 ARMHIEIYKYPAWS-D----VVEIETWCQSEG--RIGTRRDWILKDYATGEVIGRATSK 195 (370)
Q Consensus 144 ~r~~Iey~r~p~~g-D----~V~I~Twv~~~~--r~~~~R~f~I~d~~~Gevla~a~s~ 195 (370)
.++.++|.+|...| | +|+++..+.+.. +-.......+.+ ++++++++|...
T Consensus 81 ~~~~~rF~~pv~~g~D~~~~~l~~~~~V~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~ 138 (142)
T PRK13693 81 TEYNVRFTAVVPVPNDGKGAELVFNGRVKSVDPESKSVTIALTATT-GGKKIFGRAIAS 138 (142)
T ss_pred EEEEEEecccEECCCCccceEEEEEEEEEEeccCCcEEEEEEEEEE-CCcEEEEEEEEE
Confidence 46899999999864 3 888888888753 334445555665 555556665544
No 127
>PF03756 AfsA: A-factor biosynthesis hotdog domain; InterPro: IPR005509 The AfsA family are key enzymes in A-factor biosynthesis, which is essential for streptomycin production and resistance. This domain is distantly related to the thioester dehydratase FabZ family and therefore has a Hotdog domain [].
Probab=38.24 E-value=2.4e+02 Score=23.54 Aligned_cols=61 Identities=11% Similarity=0.139 Sum_probs=42.3
Q ss_pred cceEEEEEEeccccCCCCEEEEEEEeeccCCCcccccccCCCCCCcccCCCCCceEEEEEEEECCCCcEEEEEEEEEEe
Q 017534 288 HELQTITLDYRRECQQDDVVDSLTSAEPFEDAEPVSKLQGTNGSPAITGDKEDNHQFLHLLRLSGDGSEINRGRSVWRK 366 (370)
Q Consensus 288 ~~l~~~~i~Y~~e~~~gd~v~v~t~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~l~~~~dG~~ia~~~t~W~~ 366 (370)
+.+.+++++|.+.+.++-.+.+...+..-.. .+| ....+...+....+|..++++...|.|
T Consensus 72 ~~~~~l~~~f~~~~e~~~P~~~~~~~~~~~~---------~~~---------~~~~~~~~v~~~q~g~~~a~~~~~~tc 132 (132)
T PF03756_consen 72 FVLTSLDFTFSRFAELDVPADLTVRITCRDR---------RGG---------RPRGLRFRVTVSQGGRVVATASMTFTC 132 (132)
T ss_pred EEEEEEEEEEccccccCCCEEEEEEEEeccc---------cCC---------ccceEEEEEEEEECCEEEEEEEEEEEC
Confidence 5789999999999887777777766553211 011 223444455556789999999999987
No 128
>PF01575 MaoC_dehydratas: MaoC like domain; InterPro: IPR002539 The C terminus of the MaoC protein is found to share similarity with a wide variety of enzymes. All these enzymes contain multiple domains. This domain is found in parts of two enzymes that have been assigned dehydratase activities. A deletion mutant of the C-terminal 271 amino acids in Q02207 from SWISSPROT abolished its 2-enoyl-CoA hydratase activity, suggesting that this region may be a hydratase enzyme []. The maoC gene is part of a operon with maoA which is involved in the synthesis of monoamine oxidase [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1PN4_C 1PN2_B 1S9C_K 3OML_A 1Q6W_B 2B3M_A 3K67_B ....
Probab=35.46 E-value=67 Score=26.50 Aligned_cols=28 Identities=11% Similarity=0.191 Sum_probs=23.1
Q ss_pred cceEEEEEEeccccCCCCEEEEEEEeec
Q 017534 288 HELQTITLDYRRECQQDDVVDSLTSAEP 315 (370)
Q Consensus 288 ~~l~~~~i~Y~~e~~~gd~v~v~t~v~~ 315 (370)
..+..+++.|++|++.||+|.+..++..
T Consensus 76 ~~~~~~~~rF~~PV~~gdtl~~~~~v~~ 103 (122)
T PF01575_consen 76 ARLGRFNVRFRAPVFPGDTLTAEVEVTE 103 (122)
T ss_dssp EEEEEEEEEESS--BTTEEEEEEEEEEE
T ss_pred eEEEEEEEEEeccccCCCEEEEEEEEEE
Confidence 4678999999999999999999888765
No 129
>PF07977 FabA: FabA-like domain; InterPro: IPR013114 Fatty acids biosynthesis occurs by two distinct pathways: in fungi, mammals and mycobacteria, type I or associative fatty-acid biosynthesis (type I FAS) is accomplished by multifunctional proteins in which distinct domains catalyse specific reactions; in plants and most bacteria, type II or dissociative fatty-acid biosynthesis (type II FAS) is accomplished by distinct enzymes []. Both FabZ and FabA catalyse the dehydration of beta-hydroxyacyl acyl carrier protein (ACP) to trans 2-enoyl ACP. However, FabZ and FabA display subtle differences in substrate specificities, whereby FabA is most effective on acyl ACPs of 9-11 carbon atoms in length, while FabZ is less specific. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains. This enzyme domain has a HotDog fold.; PDB: 3D6X_F 2GLV_J 2GLM_E 2GLP_E 2GLL_C 1U1Z_F 3ESI_A 3AZB_T 3AZA_M 3AZ9_U ....
Probab=33.14 E-value=1.6e+02 Score=24.70 Aligned_cols=26 Identities=8% Similarity=0.075 Sum_probs=19.6
Q ss_pred eEEEEEEeccccCCCC-EEEEEEEeec
Q 017534 290 LQTITLDYRRECQQDD-VVDSLTSAEP 315 (370)
Q Consensus 290 l~~~~i~Y~~e~~~gd-~v~v~t~v~~ 315 (370)
..--.+.|++++.+|| .+++...+..
T Consensus 86 ~~~~~~kF~~~v~Pg~~~l~~~v~i~~ 112 (138)
T PF07977_consen 86 AGIRNVKFRGPVYPGDKTLRIEVEIKK 112 (138)
T ss_dssp EEEEEEEE-S-B-TTE-EEEEEEEEEE
T ss_pred ccccEEEECccEeCCCcEEEEEEEEEE
Confidence 4577899999999999 8999888876
No 130
>COG5496 Predicted thioesterase [General function prediction only]
Probab=32.90 E-value=3.2e+02 Score=23.57 Aligned_cols=56 Identities=16% Similarity=0.101 Sum_probs=41.6
Q ss_pred ccceEEEEEEeccccCCCCEEEEEEEeeccCCCcccccccCCCCCCcccCCCCCceEEEEEEEECCCCcEEEEEEEEEE
Q 017534 287 THELQTITLDYRRECQQDDVVDSLTSAEPFEDAEPVSKLQGTNGSPAITGDKEDNHQFLHLLRLSGDGSEINRGRSVWR 365 (370)
Q Consensus 287 ~~~l~~~~i~Y~~e~~~gd~v~v~t~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~l~~~~dG~~ia~~~t~W~ 365 (370)
+-+-.++.+...+++..|..|.+.+.++.+. | ....| .|+-.++|..|-.|..+=.
T Consensus 57 ttVG~ev~vrHla~~~~G~~V~i~~~l~~v~------------G---------r~v~f--~i~a~~~~~~Ig~g~h~R~ 112 (130)
T COG5496 57 TTVGTEVLVRHLAATPPGLTVTIGARLEKVE------------G---------RKVKF--RIIAMEGGDKIGEGTHTRV 112 (130)
T ss_pred ceeeEEEEeeeccCCCCCCeEEEEEEEEEEe------------c---------cEEEE--EEEEeeCCcEEeeeEEEEE
Confidence 3456799999999999999999999998863 3 23333 4444477888888876543
No 131
>TIGR02447 yiiD_Cterm thioesterase domain, putative. This family consists of a broadly distributed uncharacterized domain found often as a standalone protein. The member from Shewanella oneidensis, PDB|1T82_A (Forouhar, et al., unpublished) is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an Acetyltransf_1 domain (PFAM model pfam00583). The function of this protein is unknown.
Probab=32.82 E-value=2.8e+02 Score=23.59 Aligned_cols=99 Identities=11% Similarity=0.001 Sum_probs=49.9
Q ss_pred eeeeeecccCcCCcccchhhHHHHHHHhCC-------cccc--cccceEEEEEEeccccCCCCEEEEEEEeeccCCCccc
Q 017534 252 LGLIPRRADLDMNQHVNNVTYIGWLLESMP-------QDVI--DTHELQTITLDYRRECQQDDVVDSLTSAEPFEDAEPV 322 (370)
Q Consensus 252 ~~~~Vr~sDiD~ngHVNN~~Y~~w~~~~~~-------~~~~--~~~~l~~~~i~Y~~e~~~gd~v~v~t~v~~~~~~~~~ 322 (370)
..+.++.. +...|=+.=..++..+..+.. .+.. ...+..+++|+|.+|+.- + +...+.+..- +..
T Consensus 26 v~~pl~~n-~N~~G~~hGG~l~tlad~a~~~~~~~~~~~~~~~~~~vt~~~~i~yl~P~~~-~-~~a~~~~~~~---~~~ 99 (138)
T TIGR02447 26 LSAPLAAN-INHHGTMFGGSLYTLATLSGWGLLWLRLQELGIDGDIVIADSHIRYLAPVTG-D-PVANCEAPDL---ESW 99 (138)
T ss_pred EEeECCCC-cCCCCceehhHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEeeeEEcCCcCC-C-eEEEEEcCCH---HHH
Confidence 34455553 555666666666666543310 0000 134667899999999975 3 4444444210 000
Q ss_pred ccc---cCCCCCCcccCCCCCceEEEEEEEECCCCcEEEEEEEEEEe
Q 017534 323 SKL---QGTNGSPAITGDKEDNHQFLHLLRLSGDGSEINRGRSVWRK 366 (370)
Q Consensus 323 ~~~---~~~~g~~~~~~~~~~~~~~~h~l~~~~dG~~ia~~~t~W~~ 366 (370)
..+ --..| ...+...+...+||+.+|.++-.++-
T Consensus 100 ~~~~~~l~~~g----------r~~~~~~~~v~~~~~lvA~~~g~~~~ 136 (138)
T TIGR02447 100 EAFLATLQRGG----------KARVKLEAQISSDGKLAATFSGEYVA 136 (138)
T ss_pred HHHHHHHHhCC----------ceEEEEEEEEEECCEEEEEEEEEEEE
Confidence 000 00012 22333333333678999999988764
No 132
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=27.69 E-value=5.6e+02 Score=24.65 Aligned_cols=59 Identities=8% Similarity=-0.086 Sum_probs=43.8
Q ss_pred EEEeEeeeeeEccccCCCCEEEEEEEEEEeCCeEEEEEEEEEECCCCcEEEEEEEEEEEE
Q 017534 140 IWVTARMHIEIYKYPAWSDVVEIETWCQSEGRIGTRRDWILKDYATGEVIGRATSKWVMM 199 (370)
Q Consensus 140 ~wVv~r~~Iey~r~p~~gD~V~I~Twv~~~~r~~~~R~f~I~d~~~Gevla~a~s~wV~v 199 (370)
.-.-..+.|.|+++...+|=+..+++....+.-+..-.=.|++ ++|+++|.+....++-
T Consensus 225 ~~aSLdhsi~Fh~~~~~d~W~L~~~~s~~a~~gr~~~~g~i~~-~~G~LvAs~~Qegl~r 283 (286)
T PRK10526 225 QIATIDHSMWFHRPFNLNEWLLYSVESTSASSARGFVRGEFYT-QDGVLVASTVQEGVMR 283 (286)
T ss_pred eEEeeeEeEEEeCCCCCCceEEEEEECCcccCCceEEEEEEEC-CCCCEEEEEEeeEEEE
Confidence 3446677889999999999999999877544222222337898 9999999998887663
No 133
>KOG2763 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=26.80 E-value=6.3e+02 Score=25.63 Aligned_cols=100 Identities=15% Similarity=0.113 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCccchhhhhhcCeEEEeEeee-eeEccccCCCC-EEEEEEEEEEeCCeEEEEEEEEE-
Q 017534 105 TIANLLQEVGCNHAQSVGFSTDGFATTTTMRKLHLIWVTARMH-IEIYKYPAWSD-VVEIETWCQSEGRIGTRRDWILK- 181 (370)
Q Consensus 105 ~yl~~~qea~~~~~~~lG~~~~~~~~~~~l~~~gl~wVv~r~~-Iey~r~p~~gD-~V~I~Twv~~~~r~~~~R~f~I~- 181 (370)
.+..|+|+...-.--......+ .....-...|....+ |+|.+++.-|+ .+.+.-.|+-.++.++.....+.
T Consensus 31 rigk~lE~ld~~a~~~hc~~~~------~~~~~p~~~VtAsV~~i~f~~~~~~~~~d~i~~a~Vt~a~~sSMEv~i~V~q 104 (357)
T KOG2763|consen 31 RIGKILEDLDALAVYRHCSEAE------EGATLPRTIVTASVDRIDFEKPSEVGQVDIIIVAKVTWAGKSSMEVSIYVMQ 104 (357)
T ss_pred HHHHHHHHhhhhhheeeccccc------ccCccceEEEEeeEEEEEeeccccccceeEEEEEEEEeccccceEEEEEEEE
Confidence 7999999876322211111101 011112566666665 88888888884 44444567777777776544443
Q ss_pred -ECC--CCcEEEEEEEEEEEEeCCCCceecCCH
Q 017534 182 -DYA--TGEVIGRATSKWVMMNQDTRRLQKVSD 211 (370)
Q Consensus 182 -d~~--~Gevla~a~s~wV~vD~~trRp~rip~ 211 (370)
|-. .-.++-.|..++|--|..++ +++++.
T Consensus 105 ~~~~~~~~~~~~kA~f~fVard~~~~-~~~l~~ 136 (357)
T KOG2763|consen 105 EDLATGEKSLVLKATFTFVARDATNG-KAPLNG 136 (357)
T ss_pred ehhccchhhheeeeEEEEEEecCCCC-ccccCC
Confidence 212 23568899999999999888 777654
No 134
>cd03450 NodN NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.
Probab=25.54 E-value=2.3e+02 Score=24.56 Aligned_cols=26 Identities=4% Similarity=-0.092 Sum_probs=22.3
Q ss_pred EEEEEEeccccCCCCEEEEEEEeecc
Q 017534 291 QTITLDYRRECQQDDVVDSLTSAEPF 316 (370)
Q Consensus 291 ~~~~i~Y~~e~~~gd~v~v~t~v~~~ 316 (370)
...++.|++|++.||+|.+...+...
T Consensus 88 g~~~~rF~~PV~~GDtl~~~~~V~~~ 113 (149)
T cd03450 88 GLDKVRFPAPVPVGSRVRGRFTLLSV 113 (149)
T ss_pred eccEEEeCcceeCCcEEEEEEEEEEE
Confidence 34589999999999999999888764
No 135
>PF14765 PS-DH: Polyketide synthase dehydratase; PDB: 3KG7_D 3KG9_A 3KG8_B 3HRR_A 3HRQ_A 3EL6_A 3KG6_B 2VZ8_A 2VZ9_A.
Probab=25.45 E-value=3.6e+02 Score=25.12 Aligned_cols=55 Identities=15% Similarity=0.123 Sum_probs=40.1
Q ss_pred EEEeEeeeeeEcc-ccCCCCEEEEEEEEEEeCCeEEEEEEEEEECCCCcEEEEEEEE
Q 017534 140 IWVTARMHIEIYK-YPAWSDVVEIETWCQSEGRIGTRRDWILKDYATGEVIGRATSK 195 (370)
Q Consensus 140 ~wVv~r~~Iey~r-~p~~gD~V~I~Twv~~~~r~~~~R~f~I~d~~~Gevla~a~s~ 195 (370)
..++.=-.+.+.+ +...++.+.+.+.....+.-...-+..++| ++|+++++....
T Consensus 229 ~lP~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~v~d-~~G~~~~~~~gl 284 (295)
T PF14765_consen 229 FLPVSIERIRIFRAPPPPGDRLYVYARLVKSDDDTITGDVTVFD-EDGRVVAELEGL 284 (295)
T ss_dssp EEEEEEEEEEESSS--SSTSEEEEEEEEESTTTTEEEEEEEEEE-TTSBEEEEEEEE
T ss_pred EcccEeCEEEEEeccCCCCCEEEEEEEEecccceEEEEEEEEEC-CCCCEEEEEccE
Confidence 3333334577874 667899999999997766666777889999 999999877653
No 136
>PF10648 Gmad2: Immunoglobulin-like domain of bacterial spore germination; InterPro: IPR018911 This domain is found linked to IPR019606 from INTERPRO in some bacterial proteins. It is predicted to contain an immunoglobulin-like all-beta fold.
Probab=24.48 E-value=2.1e+02 Score=22.73 Aligned_cols=46 Identities=22% Similarity=0.253 Sum_probs=31.1
Q ss_pred eeEccccCCCCEEEEEEEEEEeCC-eEEEEEEEEEECCCCcEEEEEEEE
Q 017534 148 IEIYKYPAWSDVVEIETWCQSEGR-IGTRRDWILKDYATGEVIGRATSK 195 (370)
Q Consensus 148 Iey~r~p~~gD~V~I~Twv~~~~r-~~~~R~f~I~d~~~Gevla~a~s~ 195 (370)
|.+ ..|..||.|.=...+++..+ +=....++|.| .+|++++++.++
T Consensus 3 I~V-~~P~pg~~V~sp~~V~G~A~~FEgtv~~rv~D-~~g~vl~e~~~~ 49 (88)
T PF10648_consen 3 IWV-TAPAPGDTVSSPVKVSGKARVFEGTVNIRVRD-GHGEVLAEGFVT 49 (88)
T ss_pred eEE-cCCCCcCCcCCCEEEEEEEEEeeeEEEEEEEc-CCCcEEEEeeEE
Confidence 444 34556777777666766543 33356788999 999999777665
No 137
>PF11456 DUF3019: Protein of unknown function (DUF3019); InterPro: IPR021559 This is a bacterial family of uncharacterised proteins.
Probab=24.00 E-value=2e+02 Score=23.64 Aligned_cols=34 Identities=21% Similarity=0.363 Sum_probs=25.0
Q ss_pred EEEEEECCCCcEEEEEEEEEEEEeCCCCceecCC
Q 017534 177 DWILKDYATGEVIGRATSKWVMMNQDTRRLQKVS 210 (370)
Q Consensus 177 ~f~I~d~~~Gevla~a~s~wV~vD~~trRp~rip 210 (370)
.|.++|..++..+|.+......+..++||-.|.|
T Consensus 66 ~f~L~~~~~~~~la~~~v~V~~~~~k~Rrr~r~p 99 (102)
T PF11456_consen 66 QFSLRDSDTGQPLAQVKVKVTWVSPKVRRRRRNP 99 (102)
T ss_pred EEEEEeCCCCcEEEEEEEEEEEeccCcCCccCCC
Confidence 4678886678889988888777767777665543
No 138
>TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN. This family includes paaN genes from Pseudomonas, Sinorhizobium, Rhodopseudomonas, Escherichia, Deinococcus and Corynebacterium. Another homology family (TIGR02288) includes several other species.
Probab=21.25 E-value=3.3e+02 Score=29.77 Aligned_cols=55 Identities=5% Similarity=0.058 Sum_probs=36.7
Q ss_pred EEEEeccccCCCCEEEEEEEeeccCCCcccccccCCCCCCcccCCCCCceEEEEEEEECCCCcEEEEEEEE
Q 017534 293 ITLDYRRECQQDDVVDSLTSAEPFEDAEPVSKLQGTNGSPAITGDKEDNHQFLHLLRLSGDGSEINRGRSV 363 (370)
Q Consensus 293 ~~i~Y~~e~~~gd~v~v~t~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~l~~~~dG~~ia~~~t~ 363 (370)
.++.|++|++.||+|++...+...... ..++ ..-+.+...+ .+.+|+.+..++-.
T Consensus 604 ~~~rF~~PV~~GDtl~~~~~V~e~~~~-------~~~~--------~g~v~~~~~v-~nq~G~~Vl~~~~~ 658 (663)
T TIGR02278 604 ENLRFLEPVGPGDTIQVRLTVKRKTPR-------DEKT--------YGVVEWAAEV-VNQNGEPVATYDVL 658 (663)
T ss_pred ceEEEcCCCCCCCEEEEEEEEEEEEec-------CCCC--------ceEEEEEEEE-EcCCCCEEEEEEEH
Confidence 489999999999999999888653110 0000 1134556666 46789988887653
No 139
>PRK13188 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed
Probab=21.10 E-value=4.5e+02 Score=27.60 Aligned_cols=52 Identities=8% Similarity=-0.059 Sum_probs=36.9
Q ss_pred EEEEeccccCCCCEEEEEEEeeccCCCcccccccCCCCCCcccCCCCCceEEEEEEEECCCCcEEEEEEEEEEe
Q 017534 293 ITLDYRRECQQDDVVDSLTSAEPFEDAEPVSKLQGTNGSPAITGDKEDNHQFLHLLRLSGDGSEINRGRSVWRK 366 (370)
Q Consensus 293 ~~i~Y~~e~~~gd~v~v~t~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~l~~~~dG~~ia~~~t~W~~ 366 (370)
-++.|+++++.||++++...+..... + .-..|.-.+. .+|+++++|+..-.-
T Consensus 408 ~kvKF~~PV~PGDtL~I~veI~~~~~----------~----------giv~f~g~~~--vdGelVaeael~~~v 459 (464)
T PRK13188 408 DKVKFRQKVVPGDTLIFKVELLSPIR----------R----------GICQMQGKAY--VNGKLVCEAELMAQI 459 (464)
T ss_pred cEEEEcCCCCCCCEEEEEEEEEEEec----------C----------CEEEEEEEEE--ECCEEEEEEEEEEEE
Confidence 38999999999999999987654110 1 2345666664 478999999876543
No 140
>PRK11563 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional
Probab=21.04 E-value=2.7e+02 Score=30.42 Aligned_cols=56 Identities=7% Similarity=0.013 Sum_probs=38.2
Q ss_pred EEEEeccccCCCCEEEEEEEeeccCCCcccccccCCCCCCcccCCCCCceEEEEEEEECCCCcEEEEEEEEE
Q 017534 293 ITLDYRRECQQDDVVDSLTSAEPFEDAEPVSKLQGTNGSPAITGDKEDNHQFLHLLRLSGDGSEINRGRSVW 364 (370)
Q Consensus 293 ~~i~Y~~e~~~gd~v~v~t~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~l~~~~dG~~ia~~~t~W 364 (370)
-++.|++|++.||+|++...+...... .++ +..-..+.+.++ +.+|+.+..+...+
T Consensus 616 ~~~rF~~PV~~GDtl~~~~~V~~~~~~--------~~~-------~~~~v~~~~~~~-nq~G~~V~~~~~~~ 671 (675)
T PRK11563 616 ENLRFLTPVKPGDTIQVRLTCKRKTPR--------RQA-------PYGVVRWDVEVT-NQDGELVATYDILT 671 (675)
T ss_pred ceEEEcCCCCCCCEEEEEEEEEEEEec--------CCC-------CceEEEEEEEEE-ECCCCEEEEEEEHH
Confidence 379999999999999999888764210 000 112356666664 67899988887643
Done!