BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017535
(370 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9GQQ0|SPIN_DROME Protein spinster OS=Drosophila melanogaster GN=spin PE=1 SV=1
Length = 605
Score = 39.3 bits (90), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 70/161 (43%), Gaps = 16/161 (9%)
Query: 12 WRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIK 71
WR + + ++ +V L+ L DP G + S + + +++ D+K L++ ++
Sbjct: 269 WRWALRVTPILGIVAVFLI-LLIKDP--VRGHSEGSHNLEATTYKQDIKALVRNRSFMLS 325
Query: 72 IPSFQIIVAQGVTGSFPWSALSFAAMWLELT----GFSHEKTAFLMALFVIASSLGGLFG 127
F + V G+ W SF + +++ + AF F + + L GL G
Sbjct: 326 TAGFTCVAF--VAGALAWWGPSFIYLGMKMQPGNENIVQDDVAFN---FGVITMLAGLLG 380
Query: 128 GRMGDFLS----ARFPNSGRIILAQISSLSAIPLAALLLLV 164
+G FLS R+P + +I A +SA L LLV
Sbjct: 381 VPLGSFLSQYLVKRYPTADPVICAFGLLVSAPLLTGACLLV 421
>sp|Q9P6J0|YHDC_SCHPO Uncharacterized transporter C1683.12 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC1683.12 PE=3 SV=1
Length = 482
Score = 35.4 bits (80), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 11/75 (14%)
Query: 104 FSHEKTAFLMALFVIASSLGGLFGGRMGDFL-----SARFPNSG--RIILAQISSLSAIP 156
+ E+ +A + S G FGG + L S+ PN G II IS++SA+
Sbjct: 161 YKREEQGKRLAYLYVCSCFSGAFGGLIATGLTKIPKSSGLPNWGWLYIIEGLISAISAL- 219
Query: 157 LAALLLLVLPDDPST 171
+L LPDDPST
Sbjct: 220 ---WILFCLPDDPST 231
>sp|O94572|YGDF_SCHPO Uncharacterized transporter C1773.15 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC1773.15 PE=3 SV=1
Length = 497
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 35/82 (42%), Gaps = 10/82 (12%)
Query: 94 FAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSAR-----FPNSGRIILAQ 148
F A W + E+ F MA V + LGGL GG M L R S IL
Sbjct: 164 FIAQW-----YRKEEQFFRMAFLVAWNGLGGLIGGSMSYGLYKRELENNLTMSPWRILFI 218
Query: 149 ISSLSAIPLAALLLLVLPDDPS 170
I+ L I + + +PD+PS
Sbjct: 219 ITGLITIINGVFIFIHIPDEPS 240
>sp|Q9FJH7|NRT23_ARATH High affinity nitrate transporter 2.3 OS=Arabidopsis thaliana
GN=NRT2.3 PE=1 SV=1
Length = 539
Score = 32.3 bits (72), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 12 WRISFHIVGLISVVVGTLVRLFANDPHFPDGGTA---NSDQVSSKSFRSDVKVLIQEAKS 68
WRI+F + G + VV+G LV D PDG + S QVS F ++ ++
Sbjct: 231 WRIAFFVPGFLQVVMGILVLSLGQD--LPDGNLSTLQKSGQVSKDKFSKVFWFAVKNYRT 288
Query: 69 VI 70
I
Sbjct: 289 WI 290
>sp|Q797E3|PBUE_BACSU Purine efflux pump PbuE OS=Bacillus subtilis (strain 168) GN=pbuE
PE=1 SV=1
Length = 388
Score = 32.0 bits (71), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 81/200 (40%), Gaps = 36/200 (18%)
Query: 11 GWRISFHIVGLISVVVGTLVRLFAN----DPHFPDGGTANSDQVSSKSFRSDVKVLIQEA 66
GWRI F +GL++++ ++ +F + P FR +K +
Sbjct: 155 GWRILFLGIGLLALISMLIISIFFERIPAEKMIP--------------FREQLKTI---- 196
Query: 67 KSVIKIPSFQIIVAQGVTGSFPWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLF 126
+KI S ++ + G + A FA E S + LF I++ GG F
Sbjct: 197 -GNLKIASSHLVTMFTLAGHYTLYA-YFAPFLEETLHLSSFWVSICYFLFGISAVCGGPF 254
Query: 127 GGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFI 186
GG + D R + I+L S A+++ +LP S+ + V+V+ GL +
Sbjct: 255 GGALSD----RLGSFKSILLVTGS-------FAIIMFLLPLSTSSMIFFLPVMVIWGL-L 302
Query: 187 SWNAPATNNPIFAEIVPEKS 206
SW+ EI P+ S
Sbjct: 303 SWSLAPAQQSYLIEIAPDSS 322
>sp|Q9LXH0|NRT26_ARATH High affinity nitrate transporter 2.6 OS=Arabidopsis thaliana
GN=NRT2.6 PE=1 SV=1
Length = 542
Score = 31.6 bits (70), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 12 WRISFHIVGLISVVVGTLVRLFANDPHFPDGGTA---NSDQVSSKSFRSDVKVLIQEAKS 68
WR +F I G++ +V+G LV D PDG + S QVS F ++ ++
Sbjct: 234 WRFAFFIPGILQIVMGILVLTLGQD--LPDGNLSTLQKSGQVSKDKFSKVFWFAVKNYRT 291
Query: 69 VI 70
I
Sbjct: 292 WI 293
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 128,061,532
Number of Sequences: 539616
Number of extensions: 5054393
Number of successful extensions: 13992
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 13983
Number of HSP's gapped (non-prelim): 33
length of query: 370
length of database: 191,569,459
effective HSP length: 119
effective length of query: 251
effective length of database: 127,355,155
effective search space: 31966143905
effective search space used: 31966143905
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)