Query 017535
Match_columns 370
No_of_seqs 582 out of 2529
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 15:59:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017535.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017535hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 99.8 3E-19 1E-23 162.1 17.6 223 4-236 176-410 (451)
2 3o7q_A L-fucose-proton symport 99.7 2.1E-16 7.2E-21 142.8 21.2 204 12-242 208-414 (438)
3 2cfq_A Lactose permease; trans 99.6 1.7E-15 5.7E-20 136.0 10.8 207 10-236 164-376 (417)
4 2gfp_A EMRD, multidrug resista 99.6 9.5E-17 3.2E-21 142.1 1.6 207 3-236 144-353 (375)
5 4aps_A DI-OR tripeptide H+ sym 99.6 9.8E-16 3.3E-20 140.6 7.2 141 92-235 303-448 (491)
6 4aps_A DI-OR tripeptide H+ sym 99.5 2.3E-13 8E-18 124.7 16.0 149 75-236 15-173 (491)
7 4gc0_A D-xylose-proton symport 99.5 2.4E-13 8.1E-18 124.6 13.6 137 90-235 295-432 (491)
8 3o7q_A L-fucose-proton symport 99.4 1.4E-12 4.9E-17 117.6 13.4 132 93-235 47-179 (438)
9 1pw4_A Glycerol-3-phosphate tr 99.4 1.8E-12 6.3E-17 117.3 14.0 138 93-242 49-188 (451)
10 2xut_A Proton/peptide symporte 99.4 3.8E-12 1.3E-16 117.6 12.4 147 78-236 18-175 (524)
11 2gfp_A EMRD, multidrug resista 99.3 3.5E-12 1.2E-16 112.6 7.1 131 93-236 21-151 (375)
12 4gc0_A D-xylose-proton symport 99.2 8.4E-11 2.9E-15 107.6 12.6 122 106-236 54-189 (491)
13 2xut_A Proton/peptide symporte 99.1 8.4E-11 2.9E-15 108.6 7.1 62 173-235 406-467 (524)
14 2cfq_A Lactose permease; trans 98.8 9.9E-11 3.4E-15 104.9 -3.8 155 68-235 2-164 (417)
15 2g9p_A Antimicrobial peptide l 34.6 22 0.00074 16.1 1.4 13 126-138 2-14 (26)
16 2a65_A Leutaa, Na(+):neurotran 23.0 4.2E+02 0.014 23.9 9.0 24 195-219 364-387 (519)
17 2dw3_A Intrinsic membrane prot 22.6 1.2E+02 0.0043 18.9 3.7 27 11-37 31-57 (77)
18 2zxe_G FXYD10, phospholemman-l 21.9 70 0.0024 19.8 2.5 21 256-276 13-33 (74)
19 4dve_A Biotin transporter BIOY 20.7 2.9E+02 0.0098 21.1 6.5 23 116-138 102-124 (198)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.82 E-value=3e-19 Score=162.08 Aligned_cols=223 Identities=16% Similarity=0.193 Sum_probs=147.3
Q ss_pred cccccccC-chhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCC-CCcccc-C--cc-cchhhhhhHH-HHhhhccchHHH
Q 017535 4 MTFMGIPG-WRISFHIVGLISVVVGTLVRLFANDPHFPDGGTA-NSDQVS-S--KS-FRSDVKVLIQ-EAKSVIKIPSFQ 76 (370)
Q Consensus 4 ~~~~~~~g-Wr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~-~--~~-~~~~~~~~~~-~~~~~~~~~~~~ 76 (370)
+++.+.+| ||++|++.++++++..++.++++||+++...... ++.+.. + .. ..++.....+ ..+.++++|.++
T Consensus 176 ~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (451)
T 1pw4_A 176 LLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLW 255 (451)
T ss_dssp HHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHH
Confidence 34456678 9999999999988887777777777433221111 110000 0 00 0000000111 135788899876
Q ss_pred HHHHHHhhhhh-hHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--hhhCCCchhHHHHHHHHH
Q 017535 77 IIVAQGVTGSF-PWSALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFL--SARFPNSGRIILAQISSL 152 (370)
Q Consensus 77 ~~~~~~~~~~~-~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~--~~~~~~~~~~~~~~~~~~ 152 (370)
...+..++... .+....+.|.|+ +.+|+++.+.+++.+...++.+++.++.|++.||+ ++|+. ..++..
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~-------~~~~~~ 328 (451)
T 1pw4_A 256 YIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA-------TGVFFM 328 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHH-------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh-------HHHHHH
Confidence 65554444444 355558899999 55899999999999999999999999999999998 77754 222222
Q ss_pred HHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHH-hhchhhHHHHH
Q 017535 153 SAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESI-LSSFAPPVVGI 231 (370)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~g~ 231 (370)
+...+ ....+..... ...+.+.+..++.|++.+...+ ...+++.+.+|++.||++.|+.+.+.++ ++.++|.+.|.
T Consensus 329 ~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~ 405 (451)
T 1pw4_A 329 TLVTI-ATIVYWMNPA-GNPTVDMICMIVIGFLIYGPVM-LIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY 405 (451)
T ss_dssp HHHHH-HHHHTTSCCT-TCHHHHHHHHHHHHHHHTHHHH-HHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHhcc-cCHHHHHHHHHHHHHHHhchHH-HHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22211 2222222221 1244455566667776666555 5678889999999999999999999999 99999999999
Q ss_pred HHHhh
Q 017535 232 LAQHV 236 (370)
Q Consensus 232 l~~~~ 236 (370)
+.+..
T Consensus 406 l~~~~ 410 (451)
T 1pw4_A 406 TVDFF 410 (451)
T ss_dssp HHHSS
T ss_pred HHHhc
Confidence 99986
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.74 E-value=2.1e-16 Score=142.77 Aligned_cols=204 Identities=14% Similarity=0.145 Sum_probs=136.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHHHHHHHHHhhhhh-hHH
Q 017535 12 WRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSF-PWS 90 (370)
Q Consensus 12 Wr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 90 (370)
||+.|++.+++.++..++.++ .+.|+.++..+++++ + ....+.+++++|+|.++...+..++... .+.
T Consensus 208 w~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~---~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (438)
T 3o7q_A 208 VQTPYMIIVAIVLLVALLIML-TKFPALQSDNHSDAK---Q-------GSFSASLSRLARIRHWRWAVLAQFCYVGAQTA 276 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-CCCCCCTTTCCCCSS---T-------TSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HcCCccccccccccc---c-------cchhhhHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 999999888877766655443 333333221111110 0 2334556788999997665554444443 455
Q ss_pred HHHHHHHH-HH-HhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCC
Q 017535 91 ALSFAAMW-LE-LTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDD 168 (370)
Q Consensus 91 ~~~~~~~~-~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (370)
...|+|.| ++ .+|++..+++.+.+...++.+++.++.|+++||+++|+. ..++.++.... .+.+...
T Consensus 277 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~-------~~~~~~~~~~~-~~~~~~~--- 345 (438)
T 3o7q_A 277 CWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKV-------LAAYALIAMAL-CLISAFA--- 345 (438)
T ss_dssp HHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH-------HHHHHHHHHHH-HHHHHHC---
T ss_pred HHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH-------HHHHHHHHHHH-HHHHHHc---
Confidence 55899999 74 469999999999999999999999999999999998865 23333333222 2222211
Q ss_pred CChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhhcCCCCC
Q 017535 169 PSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGFKPI 242 (370)
Q Consensus 169 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~~g~~~~ 242 (370)
+. .+ ..+..++.|++.+...| ..+++..+.+|++ ++.+.++.. ...+++.++|.+.|++.|..+++...
T Consensus 346 ~~-~~-~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~ 414 (438)
T 3o7q_A 346 GG-HV-GLIALTLCSAFMSIQYP-TIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTA 414 (438)
T ss_dssp CH-HH-HHHHHHHHHHHHTTHHH-HHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGG
T ss_pred CC-cH-HHHHHHHHHHHHHHHHH-HHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 11 22 23334566666666666 6788878888876 888888877 67799999999999999998335543
No 3
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.61 E-value=1.7e-15 Score=136.00 Aligned_cols=207 Identities=8% Similarity=0.046 Sum_probs=120.4
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHHHHHHHHHhhhhhhH
Q 017535 10 PGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFPW 89 (370)
Q Consensus 10 ~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (370)
.+||+.|++.+++.++..++.++..||+++... .++..+.++ . +...+++++++++|.++......+.....+
T Consensus 164 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (417)
T 2cfq_A 164 INNQFVFWLGSGCALILAVLLFFAKTDAPSSAT-VANAVGANH-S-----AFSLKLALELFRQPKLWFLSLYVIGVSCTY 236 (417)
T ss_dssp HCSHHHHTTTTTTTTTHHHHSCSSCCCCSCSSC-SSSSSSSCC-C-----CCCHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hchhHHHHHHHHHHHHHHHHHHHcCcccccccc-ccccccccc-c-----cccHHHHHHHhcCCchhhHHHHHHHHHHHH
Confidence 589999998776654443333333333321110 000000000 0 112234567888888665544433333333
Q ss_pred -HHHHHHHHHH-HHhCC---CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHh
Q 017535 90 -SALSFAAMWL-ELTGF---SHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLV 164 (370)
Q Consensus 90 -~~~~~~~~~~-~~~g~---s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (370)
....++|.|+ +.++. +....+++.++..++.+++.++.|+++||+++|+. ...+..+.. +. .....
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~-------l~~~~~~~~-~~-~~~~~ 307 (417)
T 2cfq_A 237 DVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNA-------LLLAGTIMS-VR-IIGSS 307 (417)
T ss_dssp HHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH-------HHHHHHHHH-HH-HHHHT
T ss_pred HHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHH-------HHHHHHHHH-HH-HHHHH
Confidence 3336788887 43432 23455677777778888999999999999998865 232222222 11 11221
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHH-HHHHHHHhhchhhHHHHHHHHhh
Q 017535 165 LPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAM-DRSFESILSSFAPPVVGILAQHV 236 (370)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~g~l~~~~ 236 (370)
.. .. .+.+.+..++.+++.+...+ ..+.+..|..|++.||++.++ ++....+|+.++|.+.|++.+..
T Consensus 308 ~~--~~-~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~ 376 (417)
T 2cfq_A 308 FA--TS-ALEVVILKTLHMFEVPFLLV-GCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI 376 (417)
T ss_dssp TC--CS-HHHHHHHTTHHHHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS
T ss_pred Hh--cc-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc
Confidence 22 22 22233333344444433333 446788999999999999999 48888999999999999998865
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.60 E-value=9.5e-17 Score=142.06 Aligned_cols=207 Identities=13% Similarity=0.061 Sum_probs=138.5
Q ss_pred ccccccccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHHHHHHHHH
Q 017535 3 PMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQG 82 (370)
Q Consensus 3 g~~~~~~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (370)
++++.+.+|||+.|++.+++.++..++..+..||+++.+.+++ +..+.+++++|+|.++......
T Consensus 144 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~ 208 (375)
T 2gfp_A 144 GGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPRT---------------RLLTSYKTLFGNSGFNCYLLML 208 (375)
T ss_dssp HHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCCC---------------CTTTCSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCcccc---------------cHHHHHHHHhcCcchHHHHHHH
Confidence 4556677899999999988887766655556666432221110 0111234567778866555444
Q ss_pred hhhhh-hHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHH-HHHHHH
Q 017535 83 VTGSF-PWSALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLS-AIPLAA 159 (370)
Q Consensus 83 ~~~~~-~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~-~~~~~~ 159 (370)
+.... .+....+.|.|+ +.+|+++.+.+.+.....++.+++.++.+++.||++++. ..+... ......
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~---------~~~~~~~~~~~~~ 279 (375)
T 2gfp_A 209 IGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM---------WQSVICCLLAGLL 279 (375)
T ss_dssp HHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH---------HHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH
Confidence 44333 345557888888 558999999999999999999999999999999988731 111111 100000
Q ss_pred HHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535 160 LLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV 236 (370)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 236 (370)
....... .....+.+.+..++.|++.+...+ ...+++.+..| ++||++.|+.+...+++..++|.+.|.+.+..
T Consensus 280 ~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 353 (375)
T 2gfp_A 280 MWIPDWF-GVMNVWTLLVPAALFFFGAGMLFP-LATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTG 353 (375)
T ss_dssp SSHHHHH-HHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHH
T ss_pred HHHHhhh-ccccHHHHHHHHHHHHHHHHHhhH-HHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 0000000 011233444556677788788788 88899999888 78999999999999999999999999987764
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.59 E-value=9.8e-16 Score=140.56 Aligned_cols=141 Identities=13% Similarity=0.011 Sum_probs=95.6
Q ss_pred HHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHH-HH--hCC-
Q 017535 92 LSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALL-LL--VLP- 166 (370)
Q Consensus 92 ~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~- 166 (370)
..++|.|+ +..+.+....+.+.....++.+++.++.+++.||++||+... ...+.++..+........ +. ...
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (491)
T 4aps_A 303 SVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSS--PTKFAVGLMFAGLSFLLMAIPGALYGT 380 (491)
T ss_dssp GTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---C--HHHHHHHHHHHHHHHTTTHHHHHHCCC
T ss_pred cHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCc--hHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 35678888 557777667778888888899999999999999999886521 111112222221111111 10 001
Q ss_pred CCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHh
Q 017535 167 DDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQH 235 (370)
Q Consensus 167 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~ 235 (370)
......+...+..++.|++.+...+ ..++++.+..|++.||++.|+.+...++|..+++.+.+.+.+.
T Consensus 381 ~~~~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~ 448 (491)
T 4aps_A 381 SGKVSPLWLVGSWALVILGEMLISP-VGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK 448 (491)
T ss_dssp CTTCCTHHHHHHHHHHHHHHHTTTT-HHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS
T ss_pred CCCccHHHHHHHHHHHHHHHHHHhH-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1122234455666777888887777 7889999999999999999999999999999999988876654
No 6
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.52 E-value=2.3e-13 Score=124.70 Aligned_cols=149 Identities=14% Similarity=0.138 Sum_probs=111.3
Q ss_pred HHHHHHH-HhhhhhhHHHHHHHHHHH-HH-----hCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HhhhCCCchhHHH
Q 017535 75 FQIIVAQ-GVTGSFPWSALSFAAMWL-EL-----TGFSHEKTAFLMALFVIASSLGGLFGGRMGDF-LSARFPNSGRIIL 146 (370)
Q Consensus 75 ~~~~~~~-~~~~~~~~~~~~~~~~~~-~~-----~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~~~~~~~~ 146 (370)
++.+... ++.....+....+++.|+ +. +|++..+.+++.+...++..++.+++|+++|| +|||+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~------- 87 (491)
T 4aps_A 15 LSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPA------- 87 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHH-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHH-------
Confidence 4444333 333444455667889998 66 89999999999999999999999999999999 899975
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCc--hhHHHHHHHHHHHHhhch
Q 017535 147 AQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKS--RTSVYAMDRSFESILSSF 224 (370)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~ 224 (370)
+.++.++.... .+.. ....+ .+.+.+..++.|++.+...+ ...+++.|.+|+++ |+.+.++.+...++|..+
T Consensus 88 ~~~~~~~~~~~-~~~~-~~~~~---~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 161 (491)
T 4aps_A 88 VFWGGVLIMLG-HIVL-ALPFG---ASALFGSIILIIIGTGFLKP-NVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFI 161 (491)
T ss_dssp HHHHHHHHHHH-HHHH-HSCCS---TTHHHHHHHHHHHHHHHHHH-HHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHH-HHhhh---HHHHHHHHHHHHHHHHhccc-hHHHHHHHHcCcccccceeeehHHHHHHHHHHHH
Confidence 33333333222 2222 23222 33455667778888777777 78899999999988 778888899999999999
Q ss_pred hhHHHHHHHHhh
Q 017535 225 APPVVGILAQHV 236 (370)
Q Consensus 225 ~~~~~g~l~~~~ 236 (370)
+|.+.+.+.+..
T Consensus 162 ~~~~~~~l~~~~ 173 (491)
T 4aps_A 162 APLIVGAAQEAA 173 (491)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHhhh
Confidence 999999998876
No 7
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.49 E-value=2.4e-13 Score=124.65 Aligned_cols=137 Identities=13% Similarity=0.115 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHH-HHHHHhCCCC
Q 017535 90 SALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLA-ALLLLVLPDD 168 (370)
Q Consensus 90 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 168 (370)
....|.|.+.+..+.+.........+..+..+++.++++++.||+|||+. ...+........ .+........
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~-------~~~~~~~~~~~~~~l~~~~~~~~ 367 (491)
T 4gc0_A 295 VVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPL-------QIIGALGMAIGMFSLGTAFYTQA 367 (491)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHH-------HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcch-------hccchHHHHHHHHHHHHHHhccc
Confidence 33356677778889888888888888889999999999999999999975 222222221111 1111112222
Q ss_pred CChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHh
Q 017535 169 PSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQH 235 (370)
Q Consensus 169 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~ 235 (370)
......+.+.++..++..+ ..+ ..+.+..|.+|.+.|+++.|+.+.+.++++.+++.+.+.+.+.
T Consensus 368 ~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~ 432 (491)
T 4gc0_A 368 PGIVALLSMLFYVAAFAMS-WGP-VCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKN 432 (491)
T ss_dssp CHHHHHHHHHHHHHHHHTT-TTH-HHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHH
T ss_pred chHHHHHHHHHHHHHHHhH-HHH-HHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2212222222222222222 234 5678899999999999999999999999999999888777654
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.42 E-value=1.4e-12 Score=117.59 Aligned_cols=132 Identities=13% Similarity=0.033 Sum_probs=104.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHH-hCCCCCCh
Q 017535 93 SFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLL-VLPDDPST 171 (370)
Q Consensus 93 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 171 (370)
..+|.+.+++|++..+.+++.+...++..++.++.|+++||+|||+. +.++.++......+... .. ...
T Consensus 47 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~-------l~~~~~~~~~~~~~~~~~~~---~~~ 116 (438)
T 3o7q_A 47 ILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAG-------IITGLFLYALGAALFWPAAE---IMN 116 (438)
T ss_dssp HHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHH-------HHHHHHHHHHHHHHHHHHHH---TTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHH-------HHHHHHHHHHHHHHHHhccc---ccc
Confidence 56677668999999999999999999999999999999999999976 33333333222222210 11 122
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHh
Q 017535 172 PVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQH 235 (370)
Q Consensus 172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~ 235 (370)
.+.+.+..++.|++.+...+ ...+++.+.+|+++|+.+.++.+....+|..++|.+.+.+...
T Consensus 117 ~~~l~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 179 (438)
T 3o7q_A 117 YTLFLVGLFIIAAGLGCLET-AANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILS 179 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHT
T ss_pred HHHHHHHHHHHHhhHHHhhh-hHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55567778888988888877 7899999999999999999999999999999999999998843
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.42 E-value=1.8e-12 Score=117.28 Aligned_cols=138 Identities=14% Similarity=0.144 Sum_probs=105.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCC-CCCh
Q 017535 93 SFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPD-DPST 171 (370)
Q Consensus 93 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 171 (370)
.++|.+.+++ .+..+.+++.+...++..++.++.|+++||+|||+. +.++.++.......... .+. ...
T Consensus 49 ~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~-------l~~~~~~~~~~~~~~~~-~~~~~~~- 118 (451)
T 1pw4_A 49 LAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVF-------LPAGLILAAAVMLFMGF-VPWATSS- 118 (451)
T ss_dssp HHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH-------HHHHHHHHHHHHHHHHH-CHHHHSS-
T ss_pred HHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHH-------HHHHHHHHHHHHHHHHh-hhhcccc-
Confidence 5667777777 999999999999999999999999999999999975 33333333222222211 000 011
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhhcC-CCCC
Q 017535 172 PVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYG-FKPI 242 (370)
Q Consensus 172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~~g-~~~~ 242 (370)
.+.+.+..++.|++.+...+ ...+++.+.+|+++|+.+.++.+....+|..++|.+.+++.+.. | |...
T Consensus 119 ~~~l~~~~~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-g~w~~~ 188 (451)
T 1pw4_A 119 IAVMFVLLFLCGWFQGMGWP-PCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF-NDWHAA 188 (451)
T ss_dssp SSHHHHHHHHHHHHHHHTHH-HHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT-CCSTTC
T ss_pred HHHHHHHHHHHHHHhhhccc-hHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHH
Confidence 23456667888888887777 77899999999999999999999999999999999999988877 5 6655
No 10
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.36 E-value=3.8e-12 Score=117.61 Aligned_cols=147 Identities=14% Similarity=0.011 Sum_probs=109.3
Q ss_pred HHHHHhhhhhhHHHHHHHHHHH-HHhC------CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-hhhCCCchhHHHHHH
Q 017535 78 IVAQGVTGSFPWSALSFAAMWL-ELTG------FSHEKTAFLMALFVIASSLGGLFGGRMGDFL-SARFPNSGRIILAQI 149 (370)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~-~~~g------~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~ 149 (370)
.+..++.....+....+++.|+ +++| ++..+.+++.+...++..++.+++|+++||+ |||+. +.+
T Consensus 18 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~-------~~~ 90 (524)
T 2xut_A 18 IASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNT-------ILW 90 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHH-------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH-------HHH
Confidence 3444444444456667888888 6789 9999999999999999999999999999999 98865 333
Q ss_pred HHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHH---HHHHHHHhhchhh
Q 017535 150 SSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAM---DRSFESILSSFAP 226 (370)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~ 226 (370)
+.++..+.... ... . ....+.+.+..++.|++.+...+ ...+++.+.+|+++|+.+.+. .+...++|..++|
T Consensus 91 ~~~~~~~~~~~-~~~-~--~~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~ 165 (524)
T 2xut_A 91 LSLIYCVGHAF-LAI-F--EHSVQGFYTGLFLIALGSGGIKP-LVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFAS 165 (524)
T ss_dssp HHHHHHHHHHH-HHH-T--SSCHHHHHHHHHHHHHHHHTTHH-HHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHH-h--cccHHHHHHHHHHHHHhccccch-hHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333222222 211 1 11244566677888888887777 778999999999999776666 8888999999999
Q ss_pred HHHHHHHHhh
Q 017535 227 PVVGILAQHV 236 (370)
Q Consensus 227 ~~~g~l~~~~ 236 (370)
.+.+++.+..
T Consensus 166 ~~~~~l~~~~ 175 (524)
T 2xut_A 166 LSMPLLLKNF 175 (524)
T ss_dssp HTSTHHHHTS
T ss_pred HHHHHHhccc
Confidence 9999988765
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.29 E-value=3.5e-12 Score=112.61 Aligned_cols=131 Identities=10% Similarity=0.036 Sum_probs=103.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChh
Q 017535 93 SFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTP 172 (370)
Q Consensus 93 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (370)
..+|.+.+++|.++.+.+++.+...++..++.++.|+++||+|||+. ..++..+........... ...
T Consensus 21 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-------~~~~~~~~~~~~~~~~~~-----~~~ 88 (375)
T 2gfp_A 21 PAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPV-------ILVGMSIFMLATLVAVTT-----SSL 88 (375)
T ss_dssp HHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCC-------CHHHHHHHHHHHHHHHHH-----HHH
T ss_pred hhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh-------HHHHHHHHHHHHHHHHHh-----ccH
Confidence 45677678899999999999999999999999999999999999987 233333222222221111 134
Q ss_pred HHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535 173 VMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV 236 (370)
Q Consensus 173 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 236 (370)
+.+.+..++.|++.+...+ ...+++.|..|+++|+++.++.+....+|..++|.+.+++.+..
T Consensus 89 ~~l~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 151 (375)
T 2gfp_A 89 TVLIAASAMQGMGTGVGGV-MARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMW 151 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHHHHHHHHHHhhhh-hHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc
Confidence 5566677788888877777 77889999999999999999999999999999999999887765
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.22 E-value=8.4e-11 Score=107.63 Aligned_cols=122 Identities=13% Similarity=0.067 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCC--------------CCCh
Q 017535 106 HEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPD--------------DPST 171 (370)
Q Consensus 106 ~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~ 171 (370)
....+++.+.+.++.++|.+++|+++||+|||+. +.++.++..+....... .+. ...+
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~-------l~~~~~l~~i~~i~~a~-~~~~~~~~~~~~~~~~~~a~~ 125 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS-------LKIAAVLFFISGVGSAW-PELGFTSINPDNTVPVYLAGY 125 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHH-------HHHHHHHHHHHHHHHHC-TTTTTSCSSSSSSCCGGGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH-------HHHHHHHHHHHHHHHHH-HhhhhhhhcchhHHHHHHhhh
Confidence 3456778888899999999999999999999976 33333332222211111 000 1223
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535 172 PVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV 236 (370)
Q Consensus 172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 236 (370)
.+.+.+..++.|++.|...+ ...+++.|..|++.|+...++.+....+|..+++.+...+....
T Consensus 126 ~~~l~~~R~l~G~g~G~~~~-~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 189 (491)
T 4gc0_A 126 VPEFVIYRIIGGIGVGLASM-LSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSG 189 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhcccc
Confidence 56678889999999988888 88999999999999999999999998888888877766665543
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.11 E-value=8.4e-11 Score=108.60 Aligned_cols=62 Identities=5% Similarity=-0.114 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHh
Q 017535 173 VMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQH 235 (370)
Q Consensus 173 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~ 235 (370)
+.+.+..++.|++.+...+ ..++++.+..|++.||+++|+.++..++|+.++|.+.|.+.+.
T Consensus 406 ~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~ 467 (524)
T 2xut_A 406 FWQILPYALLTFGEVLVSA-TGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSP 467 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3445556677777776666 6788899999999999999999999999999999999988764
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.83 E-value=9.9e-11 Score=104.86 Aligned_cols=155 Identities=16% Similarity=0.139 Sum_probs=91.9
Q ss_pred hhccchHHHHHHHHHhhhhhhHHHH-HHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHH
Q 017535 68 SVIKIPSFQIIVAQGVTGSFPWSAL-SFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRII 145 (370)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~ 145 (370)
+.+|+|.++......+.....++.. .++|.|+ +++|+++.+.+++.+...++..++.++.|+++||+|||+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~------ 75 (417)
T 2cfq_A 2 YYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKY------ 75 (417)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCH------
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH------
Confidence 4688999776665554444444433 6889999 5689999999999999999999999999999999999976
Q ss_pred HHHHHHHHHHHH--HHH--HHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCC--CchhHHHHHHHHHHH
Q 017535 146 LAQISSLSAIPL--AAL--LLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPE--KSRTSVYAMDRSFES 219 (370)
Q Consensus 146 ~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~ 219 (370)
..++..+.... ... .+........ .....+..+..|+..+. ......+..++ +.++...|..+....
T Consensus 76 -l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 148 (417)
T 2cfq_A 76 -LLWIITGMLVMFAPFFIFIFGPLLQYNI-LVGSIVGGIYLGFCFNA-----GAPAVEAFIEKVSRRSNFEFGRARMFGC 148 (417)
T ss_dssp -HHHHHHHTTSCHHHHHHHTHHHHHHTTC-CHHHHGGGSSTTHHHHT-----THHHHHHHHHHHHHHHTCCHHHHSSSTT
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh-----hHHHHHHHHHHhhhhcccchHHHHHHHH
Confidence 23222221110 000 0000000000 01111111111222211 12222222222 345666777777788
Q ss_pred HhhchhhHHHHHHHHh
Q 017535 220 ILSSFAPPVVGILAQH 235 (370)
Q Consensus 220 ~~~~~~~~~~g~l~~~ 235 (370)
+|..++|.+.+++.+.
T Consensus 149 ~g~~~~~~l~~~l~~~ 164 (417)
T 2cfq_A 149 VGWALGASIVGIMFTI 164 (417)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8889999999988864
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=34.58 E-value=22 Score=16.13 Aligned_cols=13 Identities=8% Similarity=0.099 Sum_probs=9.8
Q ss_pred HHHHHHHHHhhhC
Q 017535 126 FGGRMGDFLSARF 138 (370)
Q Consensus 126 ~~g~l~dr~~~~~ 138 (370)
+.|.+..++||+.
T Consensus 2 lfgklikkfgrka 14 (26)
T 2g9p_A 2 LFGKLIKKFGRKA 14 (26)
T ss_dssp HHHHHHHHHTSHH
T ss_pred cHHHHHHHHhHHH
Confidence 3578888898873
No 16
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=23.05 E-value=4.2e+02 Score=23.89 Aligned_cols=24 Identities=4% Similarity=-0.036 Sum_probs=11.2
Q ss_pred cchhccccCCCchhHHHHHHHHHHH
Q 017535 195 NPIFAEIVPEKSRTSVYAMDRSFES 219 (370)
Q Consensus 195 ~~~~~~~~~~~~~g~~~~~~~~~~~ 219 (370)
.+.+.|..+-+ |-.+..+......
T Consensus 364 vt~l~D~~~~~-R~~~~~~v~~~~f 387 (519)
T 2a65_A 364 IAFLEDELKLS-RKHAVLWTAAIVF 387 (519)
T ss_dssp HHHHHHTSCCC-HHHHHHHHHHHHH
T ss_pred HHHHHHhhCCc-HHHHHHHHHHHHH
Confidence 44556666543 4444444333333
No 17
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=22.61 E-value=1.2e+02 Score=18.86 Aligned_cols=27 Identities=15% Similarity=0.118 Sum_probs=12.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhcCCC
Q 017535 11 GWRISFHIVGLISVVVGTLVRLFANDP 37 (370)
Q Consensus 11 gWr~~f~i~~~~~~i~~~~~~~~~~~~ 37 (370)
||-.+|.+...+.++..-++=.++||.
T Consensus 31 g~AAv~f~~~~~~lv~l~~iG~~LPE~ 57 (77)
T 2dw3_A 31 GWAGGVFFGTLLLIGFFRVVGRMLPIQ 57 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCchh
Confidence 455555554444333333333455663
No 18
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=21.92 E-value=70 Score=19.78 Aligned_cols=21 Identities=5% Similarity=-0.083 Sum_probs=11.7
Q ss_pred hhhhHhHHHHHHHHHHHHHHH
Q 017535 256 RANAASLAKALYTAIGIPMAL 276 (370)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~ 276 (370)
.++.+.++.+=+++.++++++
T Consensus 13 ~YDY~tLRigGLifA~vLfi~ 33 (74)
T 2zxe_G 13 TYDYYRLRVVGLIVAAVLCVI 33 (74)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHheeccchhHHHHHHH
Confidence 355667777666554444333
No 19
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=20.71 E-value=2.9e+02 Score=21.13 Aligned_cols=23 Identities=17% Similarity=0.025 Sum_probs=16.9
Q ss_pred HHHHHHHhHHHHHHHHHHHhhhC
Q 017535 116 FVIASSLGGLFGGRMGDFLSARF 138 (370)
Q Consensus 116 ~~~~~~ig~~~~g~l~dr~~~~~ 138 (370)
+-++..++..+.|++.+|..+++
T Consensus 102 YLiGF~~aA~v~G~l~~~~~~~~ 124 (198)
T 4dve_A 102 YRIAWLFTPFLIGFFLKKLKITT 124 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHTTGGG
T ss_pred HHHHHHHHHHHHHHHHHHccccc
Confidence 35566777888899999876554
Done!