BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017536
(369 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FRY|A Chain A, The Structure Of A Putative Signal-Transduction Protein
With Cbs Domains From Burkholderia Ambifaria Mc40-6
pdb|4FRY|B Chain B, The Structure Of A Putative Signal-Transduction Protein
With Cbs Domains From Burkholderia Ambifaria Mc40-6
Length = 157
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
Query: 1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
MA + + ALL+ D + + GI+T++D A +V+ +E + + T V ++MT +V
Sbjct: 39 MAEKGIGALLVVDGDDI-AGIVTERDYARKVVLQERSSKATRVEEIMTAKVRYVEPSQST 97
Query: 61 VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIA 98
E + M + + RHLPV++ G++I L+ I + IA
Sbjct: 98 DECMALMTEHRMRHLPVLDGGKLIGLISIGDLVKSVIA 135
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 43/91 (47%)
Query: 154 VVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEK 213
+ T++ D V A K M E + + +V + GI+T +D +V+ Q + +T VE+
Sbjct: 23 IYTVTKNDFVYDAIKLMAEKGIGALLVVDGDDIAGIVTERDYARKVVLQERSSKATRVEE 82
Query: 214 VMTPNPECATIDTPIVDALHIMHDGKFLHLP 244
+MT + + +M + + HLP
Sbjct: 83 IMTAKVRYVEPSQSTDECMALMTEHRMRHLP 113
>pdb|3FHM|A Chain A, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
pdb|3FHM|B Chain B, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
pdb|3FHM|C Chain C, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
pdb|3FHM|D Chain D, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
Length = 165
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 54/99 (54%)
Query: 3 ARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVE 62
A ++ A+++TD++ ++ GI T++D+ V + + VS MT+N ++ +
Sbjct: 55 AHKIGAVVVTDADGVVLGIFTERDLVKAVAGQGAASLQQSVSVAMTKNVVRCQHNSTTDQ 114
Query: 63 ALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARME 101
++ M G+FRH+PV ENG + ++ I + I +E
Sbjct: 115 LMEIMTGGRFRHVPVEENGRLAGIISIGDVVKARIGEIE 153
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 6/115 (5%)
Query: 136 RERMFRPSLSTIIPE-----KSKVVTISPTDTVLMATKKMLELRLSSAVVT-VENKPRGI 189
RE ++ ++T + + VVT+ P ++ A + ++ + VVT + GI
Sbjct: 14 RENLYFQGMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGI 73
Query: 190 LTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLP 244
T +D++ V Q + V MT N ++ + IM G+F H+P
Sbjct: 74 FTERDLVKAVAGQGAASLQQSVSVAMTKNVVRCQHNSTTDQLMEIMTGGRFRHVP 128
>pdb|2RC3|A Chain A, Crystal Structure Of Cbs Domain, Ne2398
pdb|2RC3|B Chain B, Crystal Structure Of Cbs Domain, Ne2398
pdb|2RC3|C Chain C, Crystal Structure Of Cbs Domain, Ne2398
pdb|2RC3|D Chain D, Crystal Structure Of Cbs Domain, Ne2398
Length = 135
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 60/101 (59%), Gaps = 1/101 (0%)
Query: 1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
MAA + ALL+ L+ GILT++D + + + +++T V ++MTR +V +
Sbjct: 35 MAADNIGALLVMKDEKLV-GILTERDFSRKSYLLDKPVKDTQVKEIMTRQVAYVDLNNTN 93
Query: 61 VEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARME 101
+ + + + + RHLPV+++G+VI LL I + DAI++ +
Sbjct: 94 EDCMALITEMRVRHLPVLDDGKVIGLLSIGDLVKDAISQHQ 134
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 4/109 (3%)
Query: 140 FRPSLSTI---IPEKSK-VVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDI 195
F+ + T+ + EK VV I P D+V A +KM + + +V + K GILT +D
Sbjct: 1 FQGHMKTVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDF 60
Query: 196 LMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLP 244
+ + P T V+++MT ++ D + ++ + + HLP
Sbjct: 61 SRKSYLLDKPVKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLP 109
>pdb|2YZI|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Pyrococcus Horikoshii
pdb|2YZI|B Chain B, Crystal Structure Of Uncharacterized Conserved Protein
From Pyrococcus Horikoshii
Length = 138
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 6 VDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQ 65
V +L++ + + + G T DI RVI L + PV ++ TRN +T E L+
Sbjct: 38 VGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYD-IPVERIXTRNLITANVNTPLGEVLR 96
Query: 66 KMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARME 101
K + + +H+ + E G+++ + ++ L + R+E
Sbjct: 97 KXAEHRIKHILIEEEGKIVGIFTLSDLLEASRRRLE 132
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVEN-KPRGILTSKDILMRVISQNLPADSTLV 211
K++ + P+ +V A++ E + S VV ++ G T DI+ RVI LP D V
Sbjct: 16 KLLGVKPSTSVQEASRLXXEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYDIP-V 74
Query: 212 EKVMTPNPECATIDTPIVDALHIMHDGKFLHL 243
E++ T N A ++TP+ + L + + H+
Sbjct: 75 ERIXTRNLITANVNTPLGEVLRKXAEHRIKHI 106
>pdb|3GHD|A Chain A, Crystal Structure Of A Cystathionine Beta-Synthase Domain
Protein Fused To A Zn-Ribbon-Like Domain
pdb|3GHD|B Chain B, Crystal Structure Of A Cystathionine Beta-Synthase Domain
Protein Fused To A Zn-Ribbon-Like Domain
Length = 70
Score = 38.5 bits (88), Expect = 0.006, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVE 212
K + + P DTV K + + SAVV ++ G++T +DIL +V+++ VE
Sbjct: 1 KAIVVQPKDTVDRVAKILSRNKAGSAVVXEGDEILGVVTERDILDKVVAKGKNPKEVKVE 60
Query: 213 KVMTPNP 219
++ T NP
Sbjct: 61 EIXTKNP 67
Score = 31.2 bits (69), Expect = 0.94, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 24/34 (70%)
Query: 18 LCGILTDKDIATRVIARELNLEETPVSKVMTRNP 51
+ G++T++DI +V+A+ N +E V ++ T+NP
Sbjct: 34 ILGVVTERDILDKVVAKGKNPKEVKVEEIXTKNP 67
>pdb|2CU0|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
pdb|2CU0|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
Length = 486
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 14/100 (14%)
Query: 1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
M +D L + + ++ GI+T KDIA ARE L V ++MT+ V
Sbjct: 119 MEKHGIDGLPVVEDEKVV-GIITKKDIA----AREGKL----VKELMTKEVITVPESIEV 169
Query: 61 VEALQKMVQGKFRHLPVV-ENGEVIALLDIAKCLYDAIAR 99
EAL+ M++ + LPVV E G+++ L+ + D +AR
Sbjct: 170 EEALKIMIENRIDRLPVVDERGKLVGLI----TMSDLVAR 205
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 16/95 (16%)
Query: 154 VVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEK 213
V+TI+P +TV A M + + V + K GI+T KDI R + LV++
Sbjct: 103 VITIAPDETVDFALFLMEKHGIDGLPVVEDEKVVGIITKKDIAAR--------EGKLVKE 154
Query: 214 VMTPN----PECATIDTPIVDALHIMHDGKFLHLP 244
+MT PE ++ +AL IM + + LP
Sbjct: 155 LMTKEVITVPESIEVE----EALKIMIENRIDRLP 185
>pdb|3FV6|A Chain A, Crystal Structure Of The Cbs Domains From The Bacillus
Subtilis Ccpn Repressor
pdb|3FV6|B Chain B, Crystal Structure Of The Cbs Domains From The Bacillus
Subtilis Ccpn Repressor
pdb|3FWR|A Chain A, Crystal Structure Of The Cbs Domains From The Bacillus
Subtilis Ccpn Repressor Complexed With Adp
pdb|3FWR|B Chain B, Crystal Structure Of The Cbs Domains From The Bacillus
Subtilis Ccpn Repressor Complexed With Adp
pdb|3FWS|A Chain A, Crystal Structure Of The Cbs Domains From The Bacillus
Subtilis Ccpn Repressor Complexed With Appnp, Phosphate
And Magnesium Ions
pdb|3FWS|B Chain B, Crystal Structure Of The Cbs Domains From The Bacillus
Subtilis Ccpn Repressor Complexed With Appnp, Phosphate
And Magnesium Ions
Length = 159
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNP--TFVLSDT 58
M V L + D +A+L G+L+ KD+ I ++ L PV +MTR P T +
Sbjct: 42 MFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQQ-ELTSVPVHIIMTRMPNITVCRRED 100
Query: 59 LAVEALQKMVQGKFRHLPVVEN 80
++ + +++ + LPV+++
Sbjct: 101 YVMDIAKHLIEKQIDALPVIKD 122
>pdb|2EF7|A Chain A, Crystal Structure Of St2348, A Hypothetical Protein With
Cbs Domains From Sulfolobus Tokodaii Strain7
pdb|2EF7|B Chain B, Crystal Structure Of St2348, A Hypothetical Protein With
Cbs Domains From Sulfolobus Tokodaii Strain7
Length = 133
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 151 KSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTL 210
K++V++++ + K E + S +V NKP GI+T +DI ++ I + + T
Sbjct: 11 KTQVISVTKDAKLNDIAKVXTEKNIGSVIVVDGNKPVGIITERDI-VKAIGKGKSLE-TK 68
Query: 211 VEKVMTPNPECATIDTPIVDALHIMHDGKFLHLP 244
E+ T + D+PI AL + HLP
Sbjct: 69 AEEFXTASLITIREDSPITGALALXRQFNIRHLP 102
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 7/96 (7%)
Query: 4 RRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEA 63
+ + ++++ D N + GI+T++DI + I + +LE T + T + + D+ A
Sbjct: 33 KNIGSVIVVDGNKPV-GIITERDIV-KAIGKGKSLE-TKAEEFXTASLITIREDSPITGA 89
Query: 64 LQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYD 95
L Q RHLPVV++ +I++ DI + + D
Sbjct: 90 LALXRQFNIRHLPVVDDKGNLKGIISIRDITRAIDD 125
>pdb|1XKF|A Chain A, Crystal Structure Of Hypoxic Response Protein I (Hrpi)
With Two Coordinated Zinc Ions
pdb|1XKF|B Chain B, Crystal Structure Of Hypoxic Response Protein I (Hrpi)
With Two Coordinated Zinc Ions
Length = 133
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
M + AL + + L G+LTD+DI + +A L+ ++ + +V ++
Sbjct: 34 MREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTATAGELARDSIYYVDANASI 93
Query: 61 VEALQKMVQGKFRHLPVVENGEVIALL---DIAKCL 93
E L M + + R +PV+ ++ ++ DIA+ L
Sbjct: 94 QEMLNVMEEHQVRRVPVISEHRLVGIVTEADIARHL 129
>pdb|3KPB|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein
Mj0100 In Complex With 5 -Methylthioadenosine And
S-Adenosyl-L- Methionine.
pdb|3KPB|C Chain C, Crystal Structure Of The Cbs Domain Pair Of Protein
Mj0100 In Complex With 5 -Methylthioadenosine And
S-Adenosyl-L- Methionine.
pdb|3KPB|B Chain B, Crystal Structure Of The Cbs Domain Pair Of Protein
Mj0100 In Complex With 5 -Methylthioadenosine And
S-Adenosyl-L- Methionine.
pdb|3KPB|D Chain D, Crystal Structure Of The Cbs Domain Pair Of Protein
Mj0100 In Complex With 5 -Methylthioadenosine And
S-Adenosyl-L- Methionine.
pdb|3KPD|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein
Mj0100 In Complex With 5 -Methylthioadenosine And
S-Adenosyl-L- Methionine.
pdb|3KPD|B Chain B, Crystal Structure Of The Cbs Domain Pair Of Protein
Mj0100 In Complex With 5 -Methylthioadenosine And
S-Adenosyl-L- Methionine.
pdb|3KPD|C Chain C, Crystal Structure Of The Cbs Domain Pair Of Protein
Mj0100 In Complex With 5 -Methylthioadenosine And
S-Adenosyl-L- Methionine.
pdb|3KPD|D Chain D, Crystal Structure Of The Cbs Domain Pair Of Protein
Mj0100 In Complex With 5 -Methylthioadenosine And
S-Adenosyl-L- Methionine
Length = 122
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 41 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCL 93
T V ++++ P S+ +EA + +++ HLP+V E+G+++ ++ DIAK L
Sbjct: 1 TLVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKAL 57
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
+ ++ L + D + L GI+T DIA + + +EE +MTRN D
Sbjct: 27 LIKHNINHLPIVDEHGKLVGIITSWDIAKALAQNKKTIEE-----IMTRNVITAHEDEPV 81
Query: 61 VEALQKMVQGKFRHLPVVEN 80
KM + +PVV++
Sbjct: 82 DHVAIKMSKYNISGVPVVDD 101
>pdb|4AVF|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|C Chain C, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|D Chain D, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
Length = 490
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 34 RELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALL 87
R++ ET + R+P V T +E LQ + F PVVE GE++ ++
Sbjct: 85 RKVKKHETAI----VRDPVTVTPSTKIIELLQMAREYGFSGFPVVEQGELVGIV 134
>pdb|3KPC|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein
Mj0100 In Complex With 5 -Methylthioadenosine And
S-Adenosyl-L- Methionine
Length = 124
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 41 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALL---DIAKCL 93
T V ++++ P S+ +EA + +++ HLP+V E+G+++ ++ DIAK L
Sbjct: 3 TLVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKAL 59
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLA 60
+ ++ L + D + L GI+T DIA + + +EE +MTRN D
Sbjct: 29 LIKHNINHLPIVDEHGKLVGIITSWDIAKALAQNKKTIEE-----IMTRNVITAHEDEPV 83
Query: 61 VEALQKMVQGKFRHLPVVEN 80
KM + +PVV++
Sbjct: 84 DHVAIKMSKYNISGVPVVDD 103
>pdb|3ZFH|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Inosine
5'-monophosphate Dehydrogenase
Length = 510
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 34 RELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALL 87
R++ ET + R+P V T +E LQ + F PVVE GE++ ++
Sbjct: 105 RKVKKHETAI----VRDPVTVTPSTKIIELLQMAREYGFSGFPVVEQGELVGIV 154
>pdb|1PVM|A Chain A, Crystal Structure Of A Conserved Cbs Domain Protein Ta0289
Of Unknown Function From Thermoplasma Acidophilum
pdb|1PVM|B Chain B, Crystal Structure Of A Conserved Cbs Domain Protein Ta0289
Of Unknown Function From Thermoplasma Acidophilum
Length = 184
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 8 ALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKM 67
L++ D N G+L+++ I R I R +E P+ VM + V SD + +
Sbjct: 42 GLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKPIPKVKSDYDVKDVAAYL 101
Query: 68 VQGKFRHLPVVEN-GEVIALL 87
+ VV++ G V+ ++
Sbjct: 102 SENGLERCAVVDDPGRVVGIV 122
>pdb|2QH1|A Chain A, Structure Of Ta289, A Cbs-Rubredoxin-Like Protein, In Its
Fe+2-Bound State
pdb|2QH1|B Chain B, Structure Of Ta289, A Cbs-Rubredoxin-Like Protein, In Its
Fe+2-Bound State
Length = 198
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 8 ALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKM 67
L++ D N G+L+++ I R I R +E P+ VM + V SD + +
Sbjct: 56 GLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKPIPKVKSDYDVKDVAAYL 115
Query: 68 VQGKFRHLPVVEN-GEVIALL 87
+ VV++ G V+ ++
Sbjct: 116 SENGLERCAVVDDPGRVVGIV 136
>pdb|2YZQ|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Pyrococcus Horikoshii
Length = 282
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 151 KSKVVTISPTDTVLMATKKMLELRLSSAVVT-VENKPRGILTSKDILMRVISQN 203
K V + DT+ A K MLE VV + KP GILT DI+ R +++
Sbjct: 67 KRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKS 120
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 35 ELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALL---DIA 90
EL L PV+++MTR+ E KM + LPV+ G++I L+ D+
Sbjct: 215 ELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLL 274
Query: 91 KCLYDAIA 98
K L + A
Sbjct: 275 KVLVKSKA 282
>pdb|1O50|A Chain A, Crystal Structure Of A Cbs Domain-Containing Protein
(Tm0935) From Thermotoga Maritima At 1.87 A Resolution
Length = 157
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVV-ENGEVIALLD 88
+P +V DT EAL+ M+ + +PVV E GE++ L+
Sbjct: 104 DPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLN 143
>pdb|2IY5|B Chain B, Phenylalanyl-Trna Synthetase From Thermus Thermophilus
Complexed With Trna And A Phenylalanyl-Adenylate Analog
Length = 785
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 334 AFAFKVQDNKGLMHR--FTCGMLPFPNFIEVTNY 365
AF +V + M R F GM P N ++VTNY
Sbjct: 218 AFGLRVAPSPLWMQRALFAAGMRPINNVVDVTNY 251
>pdb|1PYS|B Chain B, Phenylalanyl-Trna Synthetase From Thermus Thermophilus
pdb|1B7Y|B Chain B, Phenylalanyl Trna Synthetase Complexed With
Phenylalaninyl-Adenylate
pdb|1EIY|B Chain B, The Crystal Structure Of Phenylalanyl-Trna Synthetase From
Thermus Thermophilus Complexed With Cognate Trnaphe
pdb|1B70|B Chain B, Phenylalanyl Trna Synthetase Complexed With Phenylalanine
pdb|1JJC|B Chain B, Crystal Structure At 2.6a Resolution Of Phenylalanyl-trna
Synthetase Complexed With Phenylalanyl-adenylate In The
Presence Of Manganese
pdb|2AKW|B Chain B, Crystal Structure Of T.thermophilus Phenylalanyl-trna
Synthetase Complexed With P-cl-phenylalanine
pdb|2ALY|B Chain B, Crystal Structure Of T.Thermophilus Phenylalanyl-Trna
Synthetase Complexed With
5'-O-[n-(L-Tyrosyl)sulphamoyl]adenosine
pdb|2AMC|B Chain B, Crystal Structure Of Phenylalanyl-Trna Synthetase
Complexed With L- Tyrosine
pdb|3HFZ|B Chain B, Crystal Structure Of Thermus Thermophilus
Phenylalanyl-Trna Synthetase Comlexed With M-Tyrosine
pdb|3TEH|B Chain B, Crystal Structure Of Thermus Thermophilus
Phenylalanyl-Trna Synthetase Comlexed With L-Dopa
Length = 785
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 334 AFAFKVQDNKGLMHR--FTCGMLPFPNFIEVTNY 365
AF +V + M R F GM P N ++VTNY
Sbjct: 218 AFGLRVAPSPLWMQRALFAAGMRPINNVVDVTNY 251
>pdb|1Y5H|A Chain A, Crystal Structure Of Truncated Se-Met Hypoxic Response
Protein I (Hrpi)
pdb|1Y5H|B Chain B, Crystal Structure Of Truncated Se-Met Hypoxic Response
Protein I (Hrpi)
Length = 133
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 6 VDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQ 65
+ AL + + L G LTD+DI + +A L+ ++ + +V ++ E L
Sbjct: 39 IGALPICGDDDRLHGXLTDRDIVIKGLAAGLDPNTATAGELARDSIYYVDANASIQEXLN 98
Query: 66 KMVQGKFRHLPVVENGEVIALL---DIAKCL 93
+ + R +PV+ ++ ++ DIA+ L
Sbjct: 99 VXEEHQVRRVPVISEHRLVGIVTEADIARHL 129
>pdb|3SL7|A Chain A, Crystal Structure Of Cbs-Pair Protein, Cbsx2 From
Arabidopsis Thaliana
pdb|3SL7|B Chain B, Crystal Structure Of Cbs-Pair Protein, Cbsx2 From
Arabidopsis Thaliana
Length = 180
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 43 VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALL 87
V + T +P V T +A + +++ KFR LPVV+ +G++I +L
Sbjct: 100 VGDLXTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGIL 145
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,246,430
Number of Sequences: 62578
Number of extensions: 332139
Number of successful extensions: 732
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 689
Number of HSP's gapped (non-prelim): 59
length of query: 369
length of database: 14,973,337
effective HSP length: 100
effective length of query: 269
effective length of database: 8,715,537
effective search space: 2344479453
effective search space used: 2344479453
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)