Query 017537
Match_columns 369
No_of_seqs 182 out of 602
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 16:01:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017537.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017537hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hu3_A EIF4GII; heat repeat, t 100.0 1.9E-60 6.4E-65 453.0 21.9 248 61-311 5-260 (260)
2 2vso_E Eukaryotic initiation f 100.0 5.2E-55 1.8E-59 420.4 22.8 246 47-294 2-284 (284)
3 3rk6_A Polyadenylate-binding p 100.0 2.3E-50 8E-55 378.2 15.3 204 62-288 14-234 (234)
4 2i2o_A EIF4G-like protein; pro 100.0 7.7E-46 2.6E-50 345.5 12.9 194 77-297 10-213 (224)
5 1uw4_B UPF2, regulator of nons 99.7 2.6E-16 8.9E-21 147.8 19.3 210 67-310 4-239 (248)
6 1h2v_C 80 kDa nuclear CAP bind 99.0 8.5E-09 2.9E-13 110.9 17.0 191 66-294 7-227 (771)
7 4b89_A General negative regula 96.1 0.47 1.6E-05 44.1 18.3 191 60-287 27-224 (249)
8 4gmj_A CCR4-NOT transcription 95.0 2 6.9E-05 39.4 17.9 189 65-286 5-200 (229)
9 3u0r_A Apoptosis inhibitor 5; 85.6 11 0.00039 38.2 13.5 158 67-248 178-360 (507)
10 3pev_B Nucleoporin GLE1; RECA, 54.9 1.4E+02 0.0048 28.0 15.4 165 67-250 44-245 (297)
11 2f3j_A RNA and export factor b 47.6 20 0.00069 30.7 4.6 8 302-309 21-28 (177)
12 1u84_A Hypothetical protein; s 37.7 95 0.0032 24.1 6.6 66 62-131 4-76 (90)
13 1juq_A ADP-ribosylation factor 29.6 2.5E+02 0.0084 23.9 8.7 91 195-292 31-130 (171)
14 3lay_A Zinc resistance-associa 27.9 2.9E+02 0.01 23.8 9.3 33 257-289 94-127 (175)
15 3g2s_A C-terminal fragment of 26.5 2.8E+02 0.0095 23.1 9.1 91 195-292 29-128 (149)
16 2pk2_A Cyclin-T1, protein TAT; 23.0 32 0.0011 33.1 1.9 13 121-133 82-94 (358)
17 1mhq_A ADP-ribosylation factor 21.7 3.4E+02 0.012 22.4 9.6 91 195-292 19-118 (148)
18 2khv_A Phage integrase; soluti 20.9 67 0.0023 24.0 3.0 42 74-115 43-84 (106)
No 1
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14
Probab=100.00 E-value=1.9e-60 Score=453.01 Aligned_cols=248 Identities=42% Similarity=0.729 Sum_probs=189.6
Q ss_pred HhhhhhHHHHHHHhhccCChhcHHHHHHHHHhcccCChHHHHHHHHHHHHHhhcCCCchHHHHHHHHHhhh-cCCCCCCC
Q 017537 61 RMRNLKWHIECRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAG-ELPDFSED 139 (369)
Q Consensus 61 ~~~~~kl~~~Vk~iLNKLTp~nFd~l~~ql~~l~i~~~e~L~~vI~lIfeKAi~Ep~fs~mYA~LC~~L~~-~l~~~~~~ 139 (369)
..+.++++++|+++||||||+||+.++.||+++++++++.+++||++||+||+.||+|++|||+||..|.. .+|....+
T Consensus 5 ~~~~~~l~r~v~giLNKLT~~nf~~i~~ql~~~~i~~~~~l~~vi~~if~kA~~ep~f~~~YA~Lc~~L~~~~~p~~~~~ 84 (260)
T 1hu3_A 5 NIKTQELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAYANMCRCLVTLKVPMADKP 84 (260)
T ss_dssp HHHHHHHHHHHHHHHTCSSCCCHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCCCC-----
T ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhCCcccCC
Confidence 45567789999999999999999999999999999999999999999999999999999999999999987 56765444
Q ss_pred hhhhHHHHHHHHHHHHHHHhhHHHHHHhhhh-------cchhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHhccCCcH
Q 017537 140 NEKITFKRLLLNKCQEEFERGEREQEEANKA-------DKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKKMLTE 212 (369)
Q Consensus 140 ~~~~~FR~~LL~rcQ~eFe~~~~~~~e~~k~-------~ee~e~~~s~eE~ee~~~k~krr~lG~i~FIGELfk~~lLte 212 (369)
+.+..||++||++||++|++.+......++. ..+.+..+..+|+++.+.+.|+|++|+|+||||||+++|+++
T Consensus 85 ~~~~~Fr~~LL~rcq~eFe~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~e~ee~~~~~k~r~lg~i~FIgeLy~~~~l~~ 164 (260)
T 1hu3_A 85 GNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTE 164 (260)
T ss_dssp ----CHHHHHHHHHHHHHHHHTC------------------------------CCSSHHHHHHHHHHHHHHHHTTTCSCH
T ss_pred ccchHHHHHHHHHHHHHHhcccchhhhHHHHhhhhcccCCHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCH
Confidence 5678899999999999999987642211100 001111223345566667889999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHhhhhcCccchHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHcCC
Q 017537 213 RIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKW 292 (369)
Q Consensus 213 ~Ii~~cI~~LL~~~~~p~Ee~IE~Lc~LL~tiG~~Ld~~k~k~~md~~F~~L~~l~~~~~ls~RiRFmI~dlidLR~nnW 292 (369)
+|||+|+..||+ +|+|++|||+|.||++||+.|+++++++.|+.||++|+.++.+.++|+|+||||+|++|||++||
T Consensus 165 ~i~~~~l~~Ll~---~~~e~~iE~l~~lL~tvG~~L~~~~~~~~l~~~f~~l~~~~~~~~ls~Rirfmi~~l~dLR~~~W 241 (260)
T 1hu3_A 165 AIMHDCVVKLLK---NHDEESLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLRLCNW 241 (260)
T ss_dssp HHHHHHHHHHHH---SCSHHHHHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999998 69999999999999999999998777789999999999999999999999999999999999999
Q ss_pred cccccccCCCChHHHHHHH
Q 017537 293 QQRRKVEGPKKIEEVHRDA 311 (369)
Q Consensus 293 ~~r~~~~~pkti~~ih~ea 311 (369)
++++.+.|||||+|||+||
T Consensus 242 ~~~~~~~~pkti~~i~~ea 260 (260)
T 1hu3_A 242 VSRRADQGPKTIEQIHKEA 260 (260)
T ss_dssp CC-----------------
T ss_pred CCCccccCCCcHHHHHhhC
Confidence 9999999999999999997
No 2
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*
Probab=100.00 E-value=5.2e-55 Score=420.42 Aligned_cols=246 Identities=27% Similarity=0.479 Sum_probs=195.9
Q ss_pred ccccccCCccccch-H-------------hhhhhHHHHHHHhhccCChhcHHHHHHHHHhccc-----CChHHHHHHHHH
Q 017537 47 VIRSDNRGKRRLSK-R-------------MRNLKWHIECRGDIGRLNAPNFKKLFEQVKAVNI-----DNAVTLAGVVSQ 107 (369)
Q Consensus 47 ~~~s~~~~k~~~~~-~-------------~~~~kl~~~Vk~iLNKLTp~nFd~l~~ql~~l~i-----~~~e~L~~vI~l 107 (369)
|.+|+|+|+|.... . .+.+.+.++|++|||||||+||+.++.||+++++ ++++.|++||++
T Consensus 2 l~~s~~~w~P~~~~~~~~~~~~~~~~~~~~~~e~l~r~vkgiLNKLT~~nf~~i~~ql~~~~~~~~~~~~~~~l~~vi~~ 81 (284)
T 2vso_E 2 LVPSANRWVPKFKSKKTEKKLAPDGKTELLDKDEVERKMKSLLNKLTLEMFDAISSEILAIANISVWETNGETLKAVIEQ 81 (284)
T ss_dssp -----CCCCCC---------------CCCCCHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHGGGGCSBCHHHHHHHHH
T ss_pred CCCCCCCCCChhhhcccccccCCCcccccccHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhccccCcHHHHHHHHHH
Confidence 46789999995542 1 2346689999999999999999999999999876 788999999999
Q ss_pred HHHHhhcCCCchHHHHHHHHHhhhcCCC-CCCC-----hhhhHHHHHHHHHHHHHHHhhHHHHHHhhhhcchhhhh-ccH
Q 017537 108 IFDKALMEPTFCEMYANFFYFLAGELPD-FSED-----NEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIK-QTE 180 (369)
Q Consensus 108 IfeKAi~Ep~fs~mYA~LC~~L~~~l~~-~~~~-----~~~~~FR~~LL~rcQ~eFe~~~~~~~e~~k~~ee~e~~-~s~ 180 (369)
||+||+.||+|++|||+||..|...+|. +.++ .+...||++||++||++|++.+.+..+.+....+.+.+ +++
T Consensus 82 If~kA~~ep~fs~~YA~Lc~~l~~~l~~~i~~e~~~~k~g~~~Fr~~LL~rcq~eFe~~~~~~~~~~~~~~~~e~e~~~~ 161 (284)
T 2vso_E 82 IFLKACDEPHWSSMYAQLCGKVVKELNPDITDETNEGKTGPKLVLHYLVARCHAEFDKGWTDKLPTNEDGTPLEPEMMSE 161 (284)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHHHHHSCTTCCBCC---CCTHHHHHHHHHHHHHHHHHHCCCSSCC------------CCT
T ss_pred HHHHHHcCcchHHHHHHHHHHHHHhcCcccccccccccchhhHHHHHHHHHHHHHHhhhhhhhhhhccccchhhhhhhhh
Confidence 9999999999999999999999988763 3221 13568999999999999999875321110000001111 222
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhccCCcHHHHHHHHHHHhcCC-CCCChhhHHHHHHHHHHHhhhhcCcc-------
Q 017537 181 EEREEKRIKARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLGQY-ENPDEEDVEALCILMSTIGEMIDHPK------- 252 (369)
Q Consensus 181 eE~ee~~~k~krr~lG~i~FIGELfk~~lLte~Ii~~cI~~LL~~~-~~p~Ee~IE~Lc~LL~tiG~~Ld~~k------- 252 (369)
| +|.+.+.|+|++|+|+||||||+++|++++|||+||..||++. .+|+|++|||+|.||++||+.||++.
T Consensus 162 -e-~~~~~~~k~r~lg~i~FIgeLyk~~~l~~~i~~~ci~~LL~~~~~~p~e~~iE~l~~lL~tvG~~Ld~~~~~~~~~~ 239 (284)
T 2vso_E 162 -E-YYAAASAKRRGLGLVRFIGFLYRLNLLTGKMMFECFRRLMKDLTDSPSEETLESVVELLNTVGEQFETDSFRTGQAT 239 (284)
T ss_dssp -T-HHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTSCC-------
T ss_pred -H-HHHHHHHHHHHhhHHHHHHHHHhccCCcHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 2 2456788999999999999999999999999999999999731 26999999999999999999999754
Q ss_pred --chHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHc-CCcc
Q 017537 253 --AKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKN-KWQQ 294 (369)
Q Consensus 253 --~k~~md~~F~~L~~l~~~~~ls~RiRFmI~dlidLR~n-nW~~ 294 (369)
++..||.||++|+.++.+.++|+|+||||+||+|||++ ||++
T Consensus 240 ~~~~~~md~~f~~l~~l~~~~~ls~RirFml~dlidLR~n~~W~~ 284 (284)
T 2vso_E 240 LEGSQLLDSLFGILDNIIQTAKISSRIKFKLIDIKELRHDKNWNS 284 (284)
T ss_dssp -CHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHTSTTC-
T ss_pred hhhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcccCCCC
Confidence 36799999999999998899999999999999999996 9985
No 3
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.3e-50 Score=378.18 Aligned_cols=204 Identities=24% Similarity=0.402 Sum_probs=180.5
Q ss_pred hhhhhHHHHHHHhhccCC--hhcHHHHHHHHHhc---ccCChHHHHHHHHHHHHHhhcCCCchHHHHHHHHHhhhcCCCC
Q 017537 62 MRNLKWHIECRGDIGRLN--APNFKKLFEQVKAV---NIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPDF 136 (369)
Q Consensus 62 ~~~~kl~~~Vk~iLNKLT--p~nFd~l~~ql~~l---~i~~~e~L~~vI~lIfeKAi~Ep~fs~mYA~LC~~L~~~l~~~ 136 (369)
...+.+.++|+++||||| |+|||.++++|+++ ++++++.|+.||++||+||++||+||++||+||.+|...++..
T Consensus 14 ~~~~~l~r~v~~iLNkLT~~p~~f~~l~~~i~~~~~~~~~~~~~L~~vi~lIfekAi~ep~fs~~YA~LC~~l~~~l~~~ 93 (234)
T 3rk6_A 14 GRGSTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNYLSHHLTIS 93 (234)
T ss_dssp ----CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHCCCC
T ss_pred cchHHHHHHHHHHHHHccCChhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCCC
Confidence 446778999999999999 99999999999987 7899999999999999999999999999999999999877643
Q ss_pred CCChhhhHHHHHHHHHHHHHHHhhHHHHHHhhhhcchhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------c
Q 017537 137 SEDNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKK--------K 208 (369)
Q Consensus 137 ~~~~~~~~FR~~LL~rcQ~eFe~~~~~~~e~~k~~ee~e~~~s~eE~ee~~~k~krr~lG~i~FIGELfk~--------~ 208 (369)
+ ++.+||++||++||++|++.++.. +. + .+.|+|++|+|+||||||++ +
T Consensus 94 ~---~~~~Fr~lLL~rcQ~eFe~~~~~~----~~---------d-------~~~k~r~lg~i~FIgELf~~l~~~~~~~~ 150 (234)
T 3rk6_A 94 P---QSGNFRQLLLQRCRTEYEVKDQAA----KG---------D-------EVTRKRFHAFVLFLGELYLNLEIKGTNGQ 150 (234)
T ss_dssp C---TTCCHHHHHHHHHHHHHTTHHHHT----SS---------C-------HHHHHHHHHHHHHHHHHHHHCCEECTTSS
T ss_pred C---chhHHHHHHHHHHHHHHHhhHHhh----hc---------c-------HHHHHHHHHHHHHHHHHHhhhcccccccc
Confidence 3 356899999999999999987532 11 1 13578999999999999998 8
Q ss_pred CCcHHHHHHHHHHHhcC-CCCCChhhHHHHHHHHHHHhhhhcC---ccchHHHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Q 017537 209 MLTERIMHECIKKLLGQ-YENPDEEDVEALCILMSTIGEMIDH---PKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDS 284 (369)
Q Consensus 209 lLte~Ii~~cI~~LL~~-~~~p~Ee~IE~Lc~LL~tiG~~Ld~---~k~k~~md~~F~~L~~l~~~~~ls~RiRFmI~dl 284 (369)
+++++|||.|+.+|+.. ..+|+|++|||+|.||++||+.||+ +++++.||.||++|+.+..++++|+|+||||+||
T Consensus 151 ~l~e~I~~~ci~~Ll~~l~~~p~ee~vE~l~~lL~tvG~~Ld~~~~~~~~~~md~~f~rl~~i~~~~~ls~Rirfml~dl 230 (234)
T 3rk6_A 151 VTRADILQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKL 230 (234)
T ss_dssp EECCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 99999999999999874 2469999999999999999999997 5778899999999999999999999999999999
Q ss_pred HHHH
Q 017537 285 IELR 288 (369)
Q Consensus 285 idLR 288 (369)
+|||
T Consensus 231 ieLR 234 (234)
T 3rk6_A 231 VELR 234 (234)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 9998
No 4
>2i2o_A EIF4G-like protein; protein structure initiative, PSI, cente eukaryotic structural genomics, CESG, structural genomics, function; HET: MSE; 1.92A {Danio rerio}
Probab=100.00 E-value=7.7e-46 Score=345.45 Aligned_cols=194 Identities=23% Similarity=0.408 Sum_probs=163.2
Q ss_pred cCChhcHHHHHHHHHhccc--CChHHHHHHHHHHHHHhhcCCCchHHHHHHHHHhhhcCCCCCCChhhhHHHHHHHHHHH
Q 017537 77 RLNAPNFKKLFEQVKAVNI--DNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPDFSEDNEKITFKRLLLNKCQ 154 (369)
Q Consensus 77 KLTp~nFd~l~~ql~~l~i--~~~e~L~~vI~lIfeKAi~Ep~fs~mYA~LC~~L~~~l~~~~~~~~~~~FR~~LL~rcQ 154 (369)
..+.++|+..+.+++...+ .+...|++||++||+||++||+||+|||+||.+|....++ ..++..||+.||++||
T Consensus 10 ~~~i~~f~~~~q~ll~~~~~~~~~~~l~~vi~lIfeKAi~ep~fs~~YA~LC~~L~~~~~~---~~g~~~Fr~~LLn~cQ 86 (224)
T 2i2o_A 10 DYKIQSFDLETQKLLKTALKDPGSVDLEKVSSVIVDQSLKDQVFSREAGRICYTIVQAEAK---QTNGSVFRRNLLNRLQ 86 (224)
T ss_dssp CCCCTTSCHHHHHHHHHHHHCGGGSCHHHHHHHHHHHHTTCHHHHHHTHHHHHHHHHHHHH---HHSCCHHHHHHHHHHH
T ss_pred ccchhccCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHccc---cccchHHHHHHHHHHH
Confidence 3455666666777665433 2445799999999999999999999999999999876432 2235569999999999
Q ss_pred HHHHhhHHHHHHhhhhcchhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHhc----cC--Cc-HHHHHHHHHHHhcCCC
Q 017537 155 EEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKK----KM--LT-ERIMHECIKKLLGQYE 227 (369)
Q Consensus 155 ~eFe~~~~~~~e~~k~~ee~e~~~s~eE~ee~~~k~krr~lG~i~FIGELfk~----~l--Lt-e~Ii~~cI~~LL~~~~ 227 (369)
++|++.. +.+.+.|+|++|+|+||||||++ ++ ++ ++|||.|+..||++..
T Consensus 87 ~eFe~~e-----------------------e~~~~~k~r~lG~i~FIgELf~~l~~~~~~~~~l~~i~~~cl~~Ll~~~~ 143 (224)
T 2i2o_A 87 QEFKARE-----------------------ETRKRSTQEWVCLVSFICNIFDYLKVNNMPMVALVHPVYDCLFRLAQSDA 143 (224)
T ss_dssp HHHHTHH-----------------------HHHHHCHHHHHHHHHHHHHHHHHSCBTTBCCGGGHHHHHHHHHHHTSHHH
T ss_pred HHHHChH-----------------------HHHHHHHHHHhHHHHHHHHHHhHhcccCcchHHHHHHHHHHHHHHhccCC
Confidence 9999842 12346789999999999999999 84 56 8899999999997533
Q ss_pred CCChhhHHHHHHHHHHHhhhhcCccchHHHHHHHHHHHH-HhhCCCCCHHHHHHHHHHHHHHHcCCccccc
Q 017537 228 NPDEEDVEALCILMSTIGEMIDHPKAKEHMDAYFDRMEK-LSNNMKLSSRVRLMLKDSIELRKNKWQQRRK 297 (369)
Q Consensus 228 ~p~Ee~IE~Lc~LL~tiG~~Ld~~k~k~~md~~F~~L~~-l~~~~~ls~RiRFmI~dlidLR~nnW~~r~~ 297 (369)
.|+|++|||+|.||++||+.||++. ++.||.||++|++ +++++++|+|+||||+||+|||++||++++.
T Consensus 144 ~p~Ee~lEcl~~LL~tvG~~Ld~~~-~~~md~~f~~l~~~l~~~~~ls~RiRfml~dlieLR~~~W~~~~~ 213 (224)
T 2i2o_A 144 LKNEEEVDCLVLQLHRIGDQLEKMN-VQLMDELFNLLRDGFLLQEDLSSMGRLLLLEILEFRAGGWKLSDT 213 (224)
T ss_dssp HTSHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHTTSCCCHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHHHHHHCCCCCCch
Confidence 5899999999999999999999754 4899999999999 7888899999999999999999999999864
No 5
>1uw4_B UPF2, regulator of nonsense transcripts 2; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: a.118.1.14
Probab=99.72 E-value=2.6e-16 Score=147.80 Aligned_cols=210 Identities=15% Similarity=0.280 Sum_probs=150.7
Q ss_pred HHHHHHHhh-ccCChhcHHHHHHHHHhcccCChHHHHHHHHHHHHHhhcCCCch--HHHHHHHHHhhhcCCCCCCChhhh
Q 017537 67 WHIECRGDI-GRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFC--EMYANFFYFLAGELPDFSEDNEKI 143 (369)
Q Consensus 67 l~~~Vk~iL-NKLTp~nFd~l~~ql~~l~i~~~e~L~~vI~lIfeKAi~Ep~fs--~mYA~LC~~L~~~l~~~~~~~~~~ 143 (369)
++..++.++ -.|++.+.+.+++++..++-++++....+++. |-++- .-.|. +..|.|...|...-|
T Consensus 4 ~~~fir~Li~~~L~~~~~~~vlk~lrKl~W~D~e~~~~l~k~-l~~~~-~~ky~nI~~lA~ll~~L~~~~~--------- 72 (248)
T 1uw4_B 4 LQEYVRKLLYKDLSKVTTEKVLRQMRKLPWQDQEVKDYVICC-MINIW-NVKYNSIHCVANLLAGLVLYQE--------- 72 (248)
T ss_dssp HHHHHHHHHHTTCSTTSHHHHHHHHHTSCTTSHHHHHHHHHH-HHCGG-GSCGGGHHHHHHHHHHHTTTCH---------
T ss_pred HHHHHHHHHHHHcccccHHHHHHHHHcCCCCcHHHHHHHHHH-hcchh-hcccchHHHHHHHHHHHHhhCh---------
Confidence 446677777 77888899999999999988888755444444 33332 12333 455677777665432
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhhcchhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHhccCCcHHHHHHHHHHHh
Q 017537 144 TFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKKMLTERIMHECIKKLL 223 (369)
Q Consensus 144 ~FR~~LL~rcQ~eFe~~~~~~~e~~k~~ee~e~~~s~eE~ee~~~k~krr~lG~i~FIGELfk~~lLte~Ii~~cI~~LL 223 (369)
.|--.+++..-++...+.... ..+.++|.+|.|+||||||+.+|++.++|++|+-.|+
T Consensus 73 ~~~i~vVD~vlE~Ir~gLE~n----------------------~~~~nQrRia~vkyLgELYny~lv~s~vIf~~Ly~li 130 (248)
T 1uw4_B 73 DVGIHVVDGVLEDIRLGMEVN----------------------QPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFT 130 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC----------------------CGGGHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHhcC----------------------cHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 333444444444443332210 0134568899999999999999999999999999999
Q ss_pred cCCCC-----CChhh-------HHHHHHHHHHHhhhhcCccchHHHHHHHHHHHHHh----------hCCCCCHHHHHHH
Q 017537 224 GQYEN-----PDEED-------VEALCILMSTIGEMIDHPKAKEHMDAYFDRMEKLS----------NNMKLSSRVRLML 281 (369)
Q Consensus 224 ~~~~~-----p~Ee~-------IE~Lc~LL~tiG~~Ld~~k~k~~md~~F~~L~~l~----------~~~~ls~RiRFmI 281 (369)
. .+. |++.+ |.++|.||.|||+.++...++..||.++..++... ++..+|.+++||+
T Consensus 131 ~-fg~~~~~~~~~~D~p~d~FRIrLvCtLL~tcg~~f~~~~~~kkLd~fL~ffQ~Y~~~K~~~~~~~k~~plP~~vef~l 209 (248)
T 1uw4_B 131 S-FGVNPDGSPSSLDPPEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLEVWTKDHPFPIDIDYMI 209 (248)
T ss_dssp H-TTCCTTSCCCSSSCTTCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHHHHHTSTTCCSSSCCCHHHHHHH
T ss_pred c-CCCCCCCCCCCCCCCccchhHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhhcccccccccCCCCCHHHHHHH
Confidence 7 222 24555 99999999999999998777889999999998863 2457999999999
Q ss_pred HHHHHH-HHcCCcccccccCCCChHHHHHH
Q 017537 282 KDSIEL-RKNKWQQRRKVEGPKKIEEVHRD 310 (369)
Q Consensus 282 ~dlidL-R~nnW~~r~~~~~pkti~~ih~e 310 (369)
+|+++. |.+-|..+.-++++..+++|.++
T Consensus 210 ~D~~~~lrp~~~~~~~~eEa~~~v~~le~~ 239 (248)
T 1uw4_B 210 SDTLELLRPKIKLCNSLEESIRQVQDLERE 239 (248)
T ss_dssp HHHHHHHCTTCCCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccCcccCCHHHHHHHHHHHHHH
Confidence 999999 87767666555666666666444
No 6
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=98.97 E-value=8.5e-09 Score=110.88 Aligned_cols=191 Identities=13% Similarity=0.194 Sum_probs=146.9
Q ss_pred hHHHHHHHhhccCCh-------hcHHHHHHHHHhcccCChHHHHHHHHHHHHHhhcCCCchHHHHHHHHHhhhcCCCCCC
Q 017537 66 KWHIECRGDIGRLNA-------PNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPDFSE 138 (369)
Q Consensus 66 kl~~~Vk~iLNKLTp-------~nFd~l~~ql~~l~i~~~e~L~~vI~lIfeKAi~Ep~fs~mYA~LC~~L~~~l~~~~~ 138 (369)
.....+++++-+|+. +|++.++..|. -++. +.-..+++.+++-++..|.+++.||.|..-++...|
T Consensus 7 ~~~~~l~~lI~rlge~~~~s~~~~l~~L~~~l~-~~l~--~~r~~i~~~l~~~~~~~P~Kt~vyAaLVgllN~k~p---- 79 (771)
T 1h2v_C 7 ETEDHLESLICKVGEKSACSLESNLEGLAGVLE-ADLP--NYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNY---- 79 (771)
T ss_dssp ---CHHHHHHHTTTSSCSSCHHHHHHHHHHHHH-HTHH--HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCH----
T ss_pred cHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHH-HHHH--hhHHHHHHHHHHHHHhCCCcchHHHHHHHHHHcCCh----
Confidence 345678888989887 44555555442 1222 334448999999999999999999999999987654
Q ss_pred ChhhhHHHHHHHHHHHHHHHhhHHHHHHhhhhcchhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHhccCCcHHHHHHH
Q 017537 139 DNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKKMLTERIMHEC 218 (369)
Q Consensus 139 ~~~~~~FR~~LL~rcQ~eFe~~~~~~~e~~k~~ee~e~~~s~eE~ee~~~k~krr~lG~i~FIGELfk~~lLte~Ii~~c 218 (369)
.|-..++.++...|+...... ..+++...++|||+|++.+++++..+.++
T Consensus 80 -----e~G~~lv~~l~~~f~~~l~~~-------------------------~~~~~k~~lrFLa~L~n~~Vv~~~~il~l 129 (771)
T 1h2v_C 80 -----NFGGEFVEAMIRQLKESLKAN-------------------------NYNEAVYLVRFLSDLVNCHVIAAPSMVAM 129 (771)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHTT-------------------------CHHHHHHHHHHHHHHHHTTSBCHHHHHHH
T ss_pred -----hHHHHHHHHHHHHHHHHHHcc-------------------------ChHHHHHHHHHHHHhccCCeecHHHHHHH
Confidence 566889999998888765421 13467889999999999999999999999
Q ss_pred HHHHhcCCC---CCC---hhhHHHHHHHHHHHhhhhcCccchHHHHHHHHHHHHHhhCC-C----------------CCH
Q 017537 219 IKKLLGQYE---NPD---EEDVEALCILMSTIGEMIDHPKAKEHMDAYFDRMEKLSNNM-K----------------LSS 275 (369)
Q Consensus 219 I~~LL~~~~---~p~---Ee~IE~Lc~LL~tiG~~Ld~~k~k~~md~~F~~L~~l~~~~-~----------------ls~ 275 (369)
+..|+.... .|. +..+.|++..|.-+|+.|-+ +.+..++.+|++++.+..+. + ...
T Consensus 130 L~~Ll~~~~e~~~~q~r~D~~v~~vL~~Lp~~G~~L~e-~~~~~l~~lle~~~~yl~~r~~~~~~ll~~~~~~~~~~~~~ 208 (771)
T 1h2v_C 130 FENFVSVTQEEDVPQVRRDWYVYAFLSSLPWVGKELYE-KKDAEMDRIFANTESYLKRRQKTHVPMLQVWTADKPHPQEE 208 (771)
T ss_dssp HHHHHHGGGCSSCCHHHHHHHHHHHHTTHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTCCCTTHHHHCSBCCCSSCCCCB
T ss_pred HHHHHHhhhhcCCcccchhHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHhcCccchhhhhccccCCCCchhh
Confidence 999997321 122 45789999999999999964 35578999999999866332 2 147
Q ss_pred HHHHHHHHHHHHHHcCCcc
Q 017537 276 RVRLMLKDSIELRKNKWQQ 294 (369)
Q Consensus 276 RiRFmI~dlidLR~nnW~~ 294 (369)
++.+|+..|..+|++||..
T Consensus 209 ~l~~L~~ql~~lr~~~w~~ 227 (771)
T 1h2v_C 209 YLDCLWAQIQKLKKDRWQE 227 (771)
T ss_dssp HHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHCCCCC
Confidence 9999999999999999975
No 7
>4b89_A General negative regulator of transcription subun; 1.50A {Saccharomyces cerevisiae S288C} PDB: 4b8a_A 4b8c_B
Probab=96.13 E-value=0.47 Score=44.10 Aligned_cols=191 Identities=9% Similarity=0.113 Sum_probs=114.5
Q ss_pred hHhhhhhHHHHHHHhhccCChhcHHHHHHHHHhcccCChHHHHHHHHH-HHHHhhcCCCchHHHHHHHHHhhhcCCCCCC
Q 017537 60 KRMRNLKWHIECRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQ-IFDKALMEPTFCEMYANFFYFLAGELPDFSE 138 (369)
Q Consensus 60 ~~~~~~kl~~~Vk~iLNKLTp~nFd~l~~ql~~l~i~~~e~L~~vI~l-IfeKAi~Ep~fs~mYA~LC~~L~~~l~~~~~ 138 (369)
.+.+...+.++|..++|.||++|++.-++++.++- +++...=++.- |.++|..||+|..+|.+|...+...
T Consensus 27 ~e~P~~~v~dki~Fi~NNls~~Nl~~k~~el~~~l--~~~y~~WFA~YLV~~Ra~~EpN~H~lY~~~l~~l~~~------ 98 (249)
T 4b89_A 27 QEGAPKDVVEKVLFVLNNVTLANLNNKVDELKKSL--TPNYFSWFSTYLVTQRAKTEPNYHDLYSKVIVAMGSG------ 98 (249)
T ss_dssp CCCCCHHHHHHHHHHHHHCCTTTHHHHHHHHHHHC--CGGGHHHHHHHHHHHTTTTCGGGHHHHHHHHHHHTCH------
T ss_pred CCCcCHHHHhhhhhhhhcCChHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHhCCH------
Confidence 34556667789999999999999999999998753 34455556665 6679999999999999999998532
Q ss_pred ChhhhHHHHHHHHHHHHHHHhhHHHHHHhhhhcchhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHhcc---CCcHHHH
Q 017537 139 DNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKK---MLTERIM 215 (369)
Q Consensus 139 ~~~~~~FR~~LL~rcQ~eFe~~~~~~~e~~k~~ee~e~~~s~eE~ee~~~k~krr~lG~i~FIGELfk~~---lLte~Ii 215 (369)
.+-+.+++.. |.....- .+. + +...+ | |...-+.=.++|-|-.-. +.+.
T Consensus 99 -----~L~~~vl~~T---~~~i~~L---L~~-~---~i~~~--e--------Rs~LKNLG~WLG~iTLarNkPI~~~--- 150 (249)
T 4b89_A 99 -----LLHQFMVNVT---LRQLFVL---LST-K---DEQAI--D--------KKHLKNLASWLGCITLALNKPIKHK--- 150 (249)
T ss_dssp -----HHHHHHHHHH---HHHHHHH---HTB-S---CGGGS--C--------HHHHHHHHHHHHHHTGGGTCCCCTT---
T ss_pred -----HHHHHHHHHH---HHHHHHH---hhh-c---ccChH--H--------HHHHHHHHHHHhHHHHhcCCCchhc---
Confidence 2223333221 1111110 000 0 00001 1 111222334677776543 1111
Q ss_pred HHHHHHHhcC-CC-CCChhhHHHHHHHHHHHhhh-hcCccchHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Q 017537 216 HECIKKLLGQ-YE-NPDEEDVEALCILMSTIGEM-IDHPKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIEL 287 (369)
Q Consensus 216 ~~cI~~LL~~-~~-~p~Ee~IE~Lc~LL~tiG~~-Ld~~k~k~~md~~F~~L~~l~~~~~ls~RiRFmI~dlidL 287 (369)
+-.++.||-+ ++ ..=+.-|-.+|++|..+-.. .-.|. -+++-.+++-|.++-..+.+-.-++|-|+-+...
T Consensus 151 ~ld~K~LL~eay~~g~L~~vIPFVcKvLe~~k~SkiFkPP-NPWt~~IL~lL~Ely~~~~LKlnlkFEIEvL~k~ 224 (249)
T 4b89_A 151 NIAFREMLIEAYKENRLEIVVPFVTKILQRASESKIFKPP-NPWTVGILKLLIELNEKANWKLSLTFEVEVLLKS 224 (249)
T ss_dssp TBCHHHHHHHHHHHTCHHHHHHHHHHHHGGGTTCSSSSTT-CHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCeEEEeeHHHHHHHhcccCCccCCC-CchHHHHHHHHHHHHhCcchhHhHHHHHHHHHHH
Confidence 1112222211 00 11234577778888877422 22232 3799999999999988888889999999998863
No 8
>4gmj_A CCR4-NOT transcription complex subunit 1; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens} PDB: 4gml_A
Probab=94.98 E-value=2 Score=39.42 Aligned_cols=189 Identities=16% Similarity=0.187 Sum_probs=107.7
Q ss_pred hhHHHHHHHhhccCChhcHHHHHHHHHhcccCChHHHHHHHH-HHHHHhhcCCCchHHHHHHHHHhhhcCCCCCCChhhh
Q 017537 65 LKWHIECRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVS-QIFDKALMEPTFCEMYANFFYFLAGELPDFSEDNEKI 143 (369)
Q Consensus 65 ~kl~~~Vk~iLNKLTp~nFd~l~~ql~~l~i~~~e~L~~vI~-lIfeKAi~Ep~fs~mYA~LC~~L~~~l~~~~~~~~~~ 143 (369)
..+.++|..++|.||++|++.-++++.++- +++...=++. +|.++|-.||+|..+|++|...+...
T Consensus 5 e~v~dki~Fi~NNls~~N~~~k~~elk~~l--~~~y~~Wfa~YLV~~Ras~EpN~h~lY~~fl~~l~~~----------- 71 (229)
T 4gmj_A 5 ENIQEKIAFIFNNLSQSNMTQKVEELKETV--KEEFMPWVSQYLVMKRVSIEPNFHSLYSNFLDTLKNP----------- 71 (229)
T ss_dssp HHHHHHHHHHHHSCCSSTHHHHHHHHHHHS--CGGGHHHHHHHHHHHTTTTCGGGHHHHHHHHHHHTCH-----------
T ss_pred HHhhhhheeehhcCCHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHhChH-----------
Confidence 345678999999999999999999998742 2333444553 46777888999999999999987431
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhhcchhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHhccCCcHHHHHHHHHHHh
Q 017537 144 TFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKKMLTERIMHECIKKLL 223 (369)
Q Consensus 144 ~FR~~LL~rcQ~eFe~~~~~~~e~~k~~ee~e~~~s~eE~ee~~~k~krr~lG~i~FIGELfk~~lLte~Ii~~cI~~LL 223 (369)
.|-+.+++..-......... ++. ..+..| +... +-+| .++|.|-.-.=-+...-+-.++.||
T Consensus 72 ~l~~~vl~~T~~~i~~LL~s----~~~------~~~~~e----R~~L--KNLG--~WLG~lTLarnkPI~~~~l~~K~LL 133 (229)
T 4gmj_A 72 EFNKMVLNETYRNIKVLLTS----DKA------AANFSD----RSLL--KNLG--HWLGMITLAKNKPILHTDLDVKSLL 133 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHTS----CCC------TTCHHH----HHHH--HHHH--HHHHHHTGGGTCCCCTTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh----ccc------ccchHH----HHHH--HHHH--HHHHHHHHccCCCchhcccCHHHHH
Confidence 23333333221111111110 000 011112 1112 2234 3677776543110000011122232
Q ss_pred cC-CC-CC--ChhhHHHHHHHHHHHhh--hhcCccchHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q 017537 224 GQ-YE-NP--DEEDVEALCILMSTIGE--MIDHPKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIE 286 (369)
Q Consensus 224 ~~-~~-~p--~Ee~IE~Lc~LL~tiG~--~Ld~~k~k~~md~~F~~L~~l~~~~~ls~RiRFmI~dlid 286 (369)
-+ ++ +. =.--|-.+|++|..+-+ .+. | .-+++-.+++-|.++-.-+.+..-++|=|+-+..
T Consensus 134 ~eay~~g~~rL~~viPFVcKvLe~~~~S~iFk-P-PNPW~~~IL~lL~Ely~~~~lKlnlkFEIEvLfk 200 (229)
T 4gmj_A 134 LEAYVKGQQELLYVVPFVAKVLESSIRSVVFR-P-PNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCK 200 (229)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHTTTTCTTTS-T-TCHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHH
T ss_pred HHHHHCCCceEEEeehhHHHHHHhcccCCcCC-C-CChhHHHHHHHHHHHHhCccchhhHHHHHHHHHH
Confidence 10 00 00 01145666777777642 332 3 2378999999999998888888999999998876
No 9
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=85.63 E-value=11 Score=38.24 Aligned_cols=158 Identities=16% Similarity=0.212 Sum_probs=101.9
Q ss_pred HHHHHHHhhccCChhcHHHHHHHHHhccc-CChHHHHHHHHHHHHHhhcCCCch----HHHHHHHHHhhhcCCCCCCChh
Q 017537 67 WHIECRGDIGRLNAPNFKKLFEQVKAVNI-DNAVTLAGVVSQIFDKALMEPTFC----EMYANFFYFLAGELPDFSEDNE 141 (369)
Q Consensus 67 l~~~Vk~iLNKLTp~nFd~l~~ql~~l~i-~~~e~L~~vI~lIfeKAi~Ep~fs----~mYA~LC~~L~~~l~~~~~~~~ 141 (369)
+...++.+|-.+|.+.|+-+.+=+-.+.+ .+.....+++++|.++|=-++.|. ....++...+.+.+|-+.....
T Consensus 178 i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~ 257 (507)
T 3u0r_A 178 ILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVH 257 (507)
T ss_dssp HHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBC
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCC
Confidence 45788999999999999988866656654 466778899999999986555544 6778888888888887765445
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHhhhhcchhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHhccC-Cc--HHHHHHH
Q 017537 142 KITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKKM-LT--ERIMHEC 218 (369)
Q Consensus 142 ~~~FR~~LL~rcQ~eFe~~~~~~~e~~k~~ee~e~~~s~eE~ee~~~k~krr~lG~i~FIGELfk~~l-Lt--e~Ii~~c 218 (369)
.+.|-.++.++.--.|..... .. ++ + .+.+-..+.++|+--+-- +. ...+-.+
T Consensus 258 StkFv~y~~~kIlP~l~~L~e-------~~-~~------~----------~~kL~LLK~lAE~s~~~~~~e~a~~~l~~i 313 (507)
T 3u0r_A 258 STRFVTYFCEQVLPNLGTLTT-------PV-EG------L----------DIQLEVLKLLAEMSSFCGDMEKLETNLRKL 313 (507)
T ss_dssp CHHHHHHHHHHTGGGTTCCCC-------C---C------C----------CHHHHHHHHHHHHHTTCCCCTTHHHHHHHH
T ss_pred hHHHHHHHHHhhccchhhccc-------cc-cc------h----------HHHHHHHHHHHHHccCCCccchHHHHHHHH
Confidence 566766665432222221100 00 00 0 024567888899887643 33 2244445
Q ss_pred HHHHhcCCCC-CCh----------------hhHHHHHHHHHHHhhhh
Q 017537 219 IKKLLGQYEN-PDE----------------EDVEALCILMSTIGEMI 248 (369)
Q Consensus 219 I~~LL~~~~~-p~E----------------e~IE~Lc~LL~tiG~~L 248 (369)
...|+...+. |+| -.+|||.-.+.+.|+..
T Consensus 314 y~~L~~ymP~~p~~~~~~~~~~~~~p~l~fS~vECLLy~fH~L~~k~ 360 (507)
T 3u0r_A 314 FDKLLEYMPLPPEEAENGENAGNEEPKLQFSYVECLLYSFHQLGRKL 360 (507)
T ss_dssp HHHHHTTSCCCC--------------CCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCCcccccccccccccCcccchhHHHHHHHHHHHHhhhC
Confidence 5555543222 221 14899999999999874
No 10
>3pev_B Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, helicase, mRNA export, nuclear hydrolase; HET: IHP; 2.50A {Saccharomyces cerevisiae} PDB: 3peu_B* 3pex_B* 3pez_B* 3rrm_B* 3rrn_B*
Probab=54.89 E-value=1.4e+02 Score=28.04 Aligned_cols=165 Identities=12% Similarity=0.196 Sum_probs=93.7
Q ss_pred HHHHHHHhhccCC--hhcHHHHHHHHHhc-cc--CChH----HHHHHHHHHHHHhh----cCCCchHHHHHHHHHhhhcC
Q 017537 67 WHIECRGDIGRLN--APNFKKLFEQVKAV-NI--DNAV----TLAGVVSQIFDKAL----MEPTFCEMYANFFYFLAGEL 133 (369)
Q Consensus 67 l~~~Vk~iLNKLT--p~nFd~l~~ql~~l-~i--~~~e----~L~~vI~lIfeKAi----~Ep~fs~mYA~LC~~L~~~l 133 (369)
.+|+|+..+|+|| .+.+.+++.+|.++ +- +++. .|.-+++.|+.+|- ..|..+.-+|.++..|....
T Consensus 44 ~kR~I~~~igQLt~s~~qi~~i~~~L~~ll~~~~~~~~~~~~~ln~lAK~iV~Q~e~ev~~~p~sA~PlA~v~~~l~~~~ 123 (297)
T 3pev_B 44 HKRKINPKFGQLTNSNQQLFKIQNELTQLINDTKGDSLAYHWILNFIAKAVVHQAETEVRVKPESALPLGKLTLYLLVQF 123 (297)
T ss_dssp HHHHHTTHHHHCCSBHHHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHS
T ss_pred HhhhccchhccccCCHHHHHHHHHHHHHHHhCccCCchHHHHHHHHHHHHHHHHHHHHhccCCcccchHHHHHHHHHHhC
Confidence 4588999999998 55777888887664 11 1221 34455566665553 36788888999999988777
Q ss_pred CCCCCChhhhHHHHHHHHHHHHH--HHhhHH---HHHH----hh-hhcchhhhhccHHHHHHHHHHHhhhHHHHHHHHHH
Q 017537 134 PDFSEDNEKITFKRLLLNKCQEE--FERGER---EQEE----AN-KADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGE 203 (369)
Q Consensus 134 ~~~~~~~~~~~FR~~LL~rcQ~e--Fe~~~~---~~~e----~~-k~~ee~e~~~s~eE~ee~~~k~krr~lG~i~FIGE 203 (369)
|++ ...|+.+.... |--+.- +.++ .- +.++++.. +++ ...-+|+-|.+++-+.
T Consensus 124 p~~---------~dillA~l~k~CP~~vp~~~~~~teegr~~mG~~~~~dg~~-E~~-------~~y~~Rm~Gi~~lyAA 186 (297)
T 3pev_B 124 PEL---------QELFMARLVKKCPFVIGFTCEIDTEKGRQNMGWKRNNENKW-EDN-------TSYDERMGGILSLFAI 186 (297)
T ss_dssp TTH---------HHHHHHHHHHHCGGGGTCCCCCSSHHHHHHTTCCBCTTSCB-CCH-------HHHHHHHHHHHHHHHH
T ss_pred ccH---------HHHHHHHHhhcCCcccccCCCcccHHHHHHcCCeeCCCCCc-ccH-------HHHHHHHHHHHHHHHH
Confidence 643 35555544332 110000 0000 00 00112211 111 2234589999999999
Q ss_pred HHhccC-----------CcHHHHHHHHHHHhcCCCCCCh---hhHHHHHHHHHHHhhhhcC
Q 017537 204 LYKKKM-----------LTERIMHECIKKLLGQYENPDE---EDVEALCILMSTIGEMIDH 250 (369)
Q Consensus 204 Lfk~~l-----------Lte~Ii~~cI~~LL~~~~~p~E---e~IE~Lc~LL~tiG~~Ld~ 250 (369)
+-.... .+..-.=..+..+|+. .|.+ -...+|..+|+.+|..+-.
T Consensus 187 I~~~~~~~~~~~~~~~p~~~~~~W~wLArilN~--~p~~~t~t~~~vL~~~Le~ag~~l~~ 245 (297)
T 3pev_B 187 ITRLQLPQEFITTTSHPFPIALSWHILARICNT--PLNLITNTHFVILGSWWDAAAVQFLQ 245 (297)
T ss_dssp HHHSCCCTTTTTTSCCSSCTHHHHHHHHHHHTS--CGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCcCcccccccCCCCCCchHHHHHHHHHhCC--CHHhhcccHHHHHHHHHHHHHHHHHH
Confidence 987641 2223333455566653 2332 2345788899999988764
No 11
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=47.56 E-value=20 Score=30.68 Aligned_cols=8 Identities=0% Similarity=0.439 Sum_probs=4.7
Q ss_pred CChHHHHH
Q 017537 302 KKIEEVHR 309 (369)
Q Consensus 302 kti~~ih~ 309 (369)
+.++||-+
T Consensus 21 ~sLDdii~ 28 (177)
T 2f3j_A 21 MSLDDIIK 28 (177)
T ss_dssp CCHHHHHH
T ss_pred cCHHHHHh
Confidence 45666663
No 12
>1u84_A Hypothetical protein; structural genomics, protein structure initiative, MCSG, PSI center for structural genomics; 1.60A {Geobacillus stearothermophilus} SCOP: a.230.1.1 PDB: 3r2x_C*
Probab=37.73 E-value=95 Score=24.14 Aligned_cols=66 Identities=21% Similarity=0.217 Sum_probs=45.6
Q ss_pred hhhhhHHHHHHHhhccCC-----hhcHHHHHHHHHhc--ccCChHHHHHHHHHHHHHhhcCCCchHHHHHHHHHhhh
Q 017537 62 MRNLKWHIECRGDIGRLN-----APNFKKLFEQVKAV--NIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAG 131 (369)
Q Consensus 62 ~~~~kl~~~Vk~iLNKLT-----p~nFd~l~~ql~~l--~i~~~e~L~~vI~lIfeKAi~Ep~fs~mYA~LC~~L~~ 131 (369)
++++...+.+..++|.-. ++.++.=+..+... ..+++..|...|..||+.+-++.- -+.. |..++.
T Consensus 4 M~~~~~~~~~~~iI~~WDPf~~g~D~Y~~Ei~~Iv~av~~~d~~~~LA~~Iq~If~~SFee~~---p~e~-c~~iA~ 76 (90)
T 1u84_A 4 MDGQQLNRLLLEWIGAWDPFGLGKDAYDVEAASVLQAVYETEDARTLAARIQSIYEFAFDEPI---PFPH-CLKLAR 76 (90)
T ss_dssp --CCHHHHHHHHHHHHHCTTSSCGGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHSSCC---CHHH-HHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCCCcCCCccchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccc---ChHH-HHHHHH
Confidence 344556677777777644 67778877777763 467899999999999999996553 2233 655554
No 13
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=29.64 E-value=2.5e+02 Score=23.91 Aligned_cols=91 Identities=12% Similarity=0.116 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCCChhhH----HHHHHHHHHHhhhhcCc-cchHHHHHHHHHHHHHhh
Q 017537 195 LGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDV----EALCILMSTIGEMIDHP-KAKEHMDAYFDRMEKLSN 269 (369)
Q Consensus 195 lG~i~FIGELfk~~lLte~Ii~~cI~~LL~~~~~p~Ee~I----E~Lc~LL~tiG~~Ld~~-k~k~~md~~F~~L~~l~~ 269 (369)
++.+.-||++.+.+-.+.+-...+|.+-|+ .+++... ..|=.+++.||+.+..+ ..+..++. |..++.
T Consensus 31 w~~ileicD~I~~~~~~~k~A~ral~krl~---~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~e----L~kl~~ 103 (171)
T 1juq_A 31 WEYIIGFCDQINKELEGPQIAVRLLAHKIQ---SPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNE----LIKVVS 103 (171)
T ss_dssp HHHHHHHHHHHHHSTTHHHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHH----HHHHHC
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHH----HHHHhc
Confidence 466778888888876666655556666665 4555443 33444455567766532 23445555 444443
Q ss_pred C----CCCCHHHHHHHHHHHHHHHcCC
Q 017537 270 N----MKLSSRVRLMLKDSIELRKNKW 292 (369)
Q Consensus 270 ~----~~ls~RiRFmI~dlidLR~nnW 292 (369)
. +..+..||-.|..+|.-.....
T Consensus 104 ~k~~~~~~~~~Vk~kil~li~~W~~~f 130 (171)
T 1juq_A 104 PKYLGDRVSEKVKTKVIELLYSWTMAL 130 (171)
T ss_dssp CCCCCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred cccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 2 3568999999999999765443
No 14
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=27.92 E-value=2.9e+02 Score=23.78 Aligned_cols=33 Identities=9% Similarity=0.049 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhhCCCCC-HHHHHHHHHHHHHHH
Q 017537 257 MDAYFDRMEKLSNNMKLS-SRVRLMLKDSIELRK 289 (369)
Q Consensus 257 md~~F~~L~~l~~~~~ls-~RiRFmI~dlidLR~ 289 (369)
+...-..|+.++..++.+ ..|+-+...+.+||.
T Consensus 94 l~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~ 127 (175)
T 3lay_A 94 LISKRYEYNALLTASSPDTAKINAVAKEMESLGQ 127 (175)
T ss_dssp HHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 344445566666555554 677878888877776
No 15
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=26.51 E-value=2.8e+02 Score=23.07 Aligned_cols=91 Identities=9% Similarity=0.100 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCCChhhHHHHHHHH----HHHhhhhcCc-cchHHHHHHHHHHHHHhh
Q 017537 195 LGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILM----STIGEMIDHP-KAKEHMDAYFDRMEKLSN 269 (369)
Q Consensus 195 lG~i~FIGELfk~~lLte~Ii~~cI~~LL~~~~~p~Ee~IE~Lc~LL----~tiG~~Ld~~-k~k~~md~~F~~L~~l~~ 269 (369)
++.+.-||++.+.+-.+.+-...+|.+-++ .+++...-....|| +.||+.+..+ ..+..++. |..++.
T Consensus 29 w~~ileicD~I~~~~~~pk~a~ral~krl~---~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~e----L~kl~~ 101 (149)
T 3g2s_A 29 WASINGFCEQLNEDFEGPPLATRLLAHKIQ---SPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNE----LIKVVS 101 (149)
T ss_dssp HHHHHHHHHHGGGSSSHHHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHH----HHHHHC
T ss_pred HHHHHHHHHHHHCCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHH----HHHHHc
Confidence 467778888888887767665566666565 45554444444444 5557666432 23445555 444443
Q ss_pred C----CCCCHHHHHHHHHHHHHHHcCC
Q 017537 270 N----MKLSSRVRLMLKDSIELRKNKW 292 (369)
Q Consensus 270 ~----~~ls~RiRFmI~dlidLR~nnW 292 (369)
. ...+..+|-.|..+|.-.....
T Consensus 102 ~k~~~~~~~~~Vk~kil~li~~W~~~f 128 (149)
T 3g2s_A 102 PKYLGSRTSEKVKNKILELLYSWTVGL 128 (149)
T ss_dssp TTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHh
Confidence 2 2468999999999999766543
No 16
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=23.05 E-value=32 Score=33.09 Aligned_cols=13 Identities=31% Similarity=0.291 Sum_probs=5.8
Q ss_pred HHHHHHHHhhhcC
Q 017537 121 MYANFFYFLAGEL 133 (369)
Q Consensus 121 mYA~LC~~L~~~l 133 (369)
+.|-=|-.|+.++
T Consensus 82 lva~acLfLA~K~ 94 (358)
T 2pk2_A 82 SVAPAALFLAAKV 94 (358)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 3444444444433
No 17
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=21.66 E-value=3.4e+02 Score=22.38 Aligned_cols=91 Identities=9% Similarity=0.025 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCCChhhHHHHHHHHH----HHhhhhcCcc-chHHHHHHHHHHHHHhh
Q 017537 195 LGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMS----TIGEMIDHPK-AKEHMDAYFDRMEKLSN 269 (369)
Q Consensus 195 lG~i~FIGELfk~~lLte~Ii~~cI~~LL~~~~~p~Ee~IE~Lc~LL~----tiG~~Ld~~k-~k~~md~~F~~L~~l~~ 269 (369)
++.+.-||++.+.+-.+.+-....|.+-|+ .+++...-....||. .||+.+..+- .+..|+ .|..++.
T Consensus 19 w~~~leicD~I~~~~~~~k~a~rai~krl~---~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~----eL~kl~~ 91 (148)
T 1mhq_A 19 WSAIQNFCEQVNTDPNGPTHAPWLLAHKIQ---SPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLN----ELIKVLS 91 (148)
T ss_dssp HHHHHHHHHHHHHSSHHHHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHH----HHHHTTC
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHH----HHHHHHc
Confidence 456667888888776555555555555554 455555444445554 4566654322 233444 4555544
Q ss_pred C----CCCCHHHHHHHHHHHHHHHcCC
Q 017537 270 N----MKLSSRVRLMLKDSIELRKNKW 292 (369)
Q Consensus 270 ~----~~ls~RiRFmI~dlidLR~nnW 292 (369)
. ...+..||-.|..+|.......
T Consensus 92 ~k~~~~~~~~~Vk~kil~li~~W~~~f 118 (148)
T 1mhq_A 92 PKYLGSWATGKVKGRVIEILFSWTVWF 118 (148)
T ss_dssp CSTTSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred cccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 2 2468899999999999765443
No 18
>2khv_A Phage integrase; solution structure, GFT, NESG, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=20.89 E-value=67 Score=23.98 Aligned_cols=42 Identities=14% Similarity=0.272 Sum_probs=30.3
Q ss_pred hhccCChhcHHHHHHHHHhcccCChHHHHHHHHHHHHHhhcC
Q 017537 74 DIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALME 115 (369)
Q Consensus 74 iLNKLTp~nFd~l~~ql~~l~i~~~e~L~~vI~lIfeKAi~E 115 (369)
-|+++|+..+..+.+.+..-...+...+..++..||+.|+.+
T Consensus 43 ~l~~It~~~i~~~~~~l~~~~~~t~~~~~~~l~~i~~~Av~~ 84 (106)
T 2khv_A 43 SVQDVDTKLIMKVLDPIWEQKPETASRLRGRIESVLDWATVR 84 (106)
T ss_dssp BSSSCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHcCHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHc
Confidence 477888888888888875422245566777888899888753
Done!