BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017539
(369 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FIJ|A Chain A, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|B Chain B, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|C Chain C, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|D Chain D, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|E Chain E, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|F Chain F, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|G Chain G, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|H Chain H, Crystal Structure Of A Uncharacterized Protein Lin1909
Length = 254
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 106/240 (44%), Gaps = 41/240 (17%)
Query: 27 VDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSN 86
V + + ++D I G P +P + + + + G+LL G+DI P LY E S
Sbjct: 26 VTYTQQRYVDAIQKVGGFPIALP-IDDPSTAVQAISLVDGLLLTGGQDITPQLYLEEPS- 83
Query: 87 LSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLY 146
+EI A +DS E+ L + L+ P ICRG Q++NVA GGTLY
Sbjct: 84 ------QEI-------GAYFPPRDSYEIALVRAALDAGKPIFAICRGXQLVNVALGGTLY 130
Query: 147 QDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSY 206
QDI + ++ QRV D G H + + + L + + VNS
Sbjct: 131 QDISQVETKALQHLQRV-----DEQLG-SHTIDIEPTSEL-------AKHHPNKKLVNSL 177
Query: 207 HHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEG----KFIMGLQFHPERMRRPDSD 262
HHQ +K+LA F A DG IE EG + +G+Q+HPE + D +
Sbjct: 178 HHQFIKKLAPSFKVTARTADGXIEA---------VEGDNLPSWYLGVQWHPELXFQTDPE 228
>pdb|1VCM|A Chain A, Crystal Structure Of T.Th. Hb8 Ctp Synthetase
pdb|1VCN|A Chain A, Crystal Structure Of T.th. Hb8 Ctp Synthetase Complex With
Sulfate Anion
Length = 550
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 76/186 (40%), Gaps = 21/186 (11%)
Query: 113 ELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVV------HI 166
++R A+ ER IPYLGIC G Q+ + + + P V +
Sbjct: 373 KVRAAQYARERKIPYLGICLGLQIAVIEFARNVAGLKGANSTEFDPHTPHPVIDLMPEQL 432
Query: 167 DYDNYDGHRHV----VKVVKDTPLHDWF--KDSLEEEKMEIWVNSYHHQGVKRLAQRFVP 220
+ + G + +++ T LH + ++ LE + VN + G++R V
Sbjct: 433 EVEGLGGTMRLGDWPMRIKPGTLLHRLYGKEEVLERHRHRYEVNPLYVDGLERAG--LVV 490
Query: 221 MAFAPDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAV 280
A P G +A + F +GLQ HPE RP P P + FV+A
Sbjct: 491 SATTPGMRGRGAGLVEAIELKDHPFFLGLQSHPEFKSRPMR-----PSPP--FVGFVEAA 543
Query: 281 IAYQKK 286
+AYQ++
Sbjct: 544 LAYQER 549
>pdb|1VCO|A Chain A, Crystal Structure Of T.Th. Hb8 Ctp Synthetase Complex With
Glutamine
Length = 550
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 76/186 (40%), Gaps = 21/186 (11%)
Query: 113 ELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVV------HI 166
++R A+ ER IPYLGIC G Q+ + + + P V +
Sbjct: 373 KVRAAQYARERKIPYLGICLGLQIAVIEFARNVAGLKGANSTEFDPHTPHPVIDLMPEQL 432
Query: 167 DYDNYDGHRHV----VKVVKDTPLHDWF--KDSLEEEKMEIWVNSYHHQGVKRLAQRFVP 220
+ + G + +++ T LH + ++ LE + VN + G++R V
Sbjct: 433 EVEGLGGTMRLGDWPMRIKPGTLLHRLYGKEEVLERHRHRYEVNPLYVDGLERAG--LVV 490
Query: 221 MAFAPDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAV 280
A P G +A + F +GLQ HPE RP P P + FV+A
Sbjct: 491 SATTPGMRGRGAGLVEAIELKDHPFFLGLQSHPEFKSRPMR-----PSPP--FVGFVEAA 543
Query: 281 IAYQKK 286
+AYQ++
Sbjct: 544 LAYQER 549
>pdb|3UOW|A Chain A, Crystal Structure Of Pf10_0123, A Gmp Synthetase From
Plasmodium Falciparum
pdb|3UOW|B Chain B, Crystal Structure Of Pf10_0123, A Gmp Synthetase From
Plasmodium Falciparum
Length = 556
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 71/167 (42%), Gaps = 24/167 (14%)
Query: 121 LERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPE-----NQRVVHIDY-DNYDGH 174
LE+ IP GIC G Q + V G + + E C + N + +I Y N+
Sbjct: 80 LEKKIPIFGICYGMQEIAVQMNGEVKKSKTSEYG--CTDVNILRNDNINNITYCRNFGDS 137
Query: 175 RHVVKVVKDTPLHD---WFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEG 231
+ + + L + ++++ + +W+N H+ V ++ + F ++ + + LI
Sbjct: 138 SSAMDLYSNYKLMNETCCLFENIKSDITTVWMN--HNDEVTKIPENFYLVSSSENCLICS 195
Query: 232 FYDPDAYNPAEGKFIMGLQFHPERMRRPDSD----EFDYPGCPSAYQ 274
Y+ + YN I G+Q+HPE D + F Y C Q
Sbjct: 196 IYNKE-YN------IYGVQYHPEVYESLDGELMFYNFAYNICKCKKQ 235
>pdb|1GPM|A Chain A, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|B Chain B, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|C Chain C, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|D Chain D, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
Length = 525
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 56/143 (39%), Gaps = 32/143 (22%)
Query: 115 RLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGH 174
R + E +P G+C G Q + + GG + E+E G+
Sbjct: 70 RAPQYVFEAGVPVFGVCYGMQTMAMQLGGHVEASNEREF-------------------GY 110
Query: 175 RHVVKVVKDTPLHDWFKDSLEEEK---MEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEG 231
V+VV D+ L +D+L + +++W++ H V + F+ +A
Sbjct: 111 AQ-VEVVNDSALVRGIEDALTADGKPLLDVWMS--HGDKVTAIPSDFITVASTESC---- 163
Query: 232 FYDPDAYNPAEGKFIMGLQFHPE 254
P A E K G+QFHPE
Sbjct: 164 ---PFAIMANEEKRFYGVQFHPE 183
>pdb|1O1Y|A Chain A, Crystal Structure Of A Glutamine Amidotransferase (tm1158)
From Thermotoga Maritima At 1.70 A Resolution
Length = 239
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 14/82 (17%)
Query: 113 ELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQD----------IEK----EVSRKCP 158
E +L + L++ IP+LGI GSQ L G ++Y+ +EK + R+ P
Sbjct: 82 EFQLIEEILKKEIPFLGIXLGSQXLAKVLGASVYRGKNGEEIGWYFVEKVSDNKFFREFP 141
Query: 159 ENQRVVHIDYDNYDGHRHVVKV 180
+ RV D +D R +V
Sbjct: 142 DRLRVFQWHGDTFDLPRRATRV 163
>pdb|3TQI|A Chain A, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|B Chain B, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|C Chain C, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|D Chain D, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
Length = 527
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 52/151 (34%), Gaps = 32/151 (21%)
Query: 114 LRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNYDG 173
LR E P LGIC G Q + GG + + + E G
Sbjct: 72 LRAPAFIFEIGCPVLGICYGMQTMAYQLGGKVNRTAKAEF-------------------G 112
Query: 174 HRHVVKVVKDTPLHDWFKDSLE---EEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIE 230
H ++V+ L D +D + E +++W++ H V L F A + +
Sbjct: 113 HAQ-LRVLNPAFLFDGIEDQVSPQGEPLLDVWMS--HGDIVSELPPGFEATACTDNSPLA 169
Query: 231 GFYDPDAYNPAEGKFIMGLQFHPERMRRPDS 261
D + GLQFHPE P
Sbjct: 170 AMADFK-------RRFFGLQFHPEVTHTPQG 193
>pdb|1S1M|A Chain A, Crystal Structure Of E. Coli Ctp Synthetase
pdb|1S1M|B Chain B, Crystal Structure Of E. Coli Ctp Synthetase
pdb|2AD5|A Chain A, Mechanisms Of Feedback Regulation And Drug Resistance Of
Ctp Synthetases: Structure Of The E. Coli Ctps/ctp
Complex At 2.8- Angstrom Resolution.
pdb|2AD5|B Chain B, Mechanisms Of Feedback Regulation And Drug Resistance Of
Ctp Synthetases: Structure Of The E. Coli Ctps/ctp
Complex At 2.8- Angstrom Resolution
Length = 545
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 114 LRLAKLCLERNIPYLGICRGSQV 136
+ A+ E NIPYLGIC G QV
Sbjct: 362 ITTARFARENNIPYLGICLGMQV 384
>pdb|2VXO|A Chain A, Human Gmp Synthetase In Complex With Xmp
pdb|2VXO|B Chain B, Human Gmp Synthetase In Complex With Xmp
Length = 697
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 52/129 (40%), Gaps = 35/129 (27%)
Query: 126 PYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKDTP 185
P LGIC G Q++N GGT++ +K V +I DN
Sbjct: 103 PVLGICYGMQMMNKVFGGTVH--------KKSVREDGVFNISVDN--------------- 139
Query: 186 LHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKF 245
F+ +EE + + H V ++A F +A + + ++ G + E K
Sbjct: 140 TCSLFRGLQKEEVVLL----THGDSVDKVADGFKVVARSGN-IVAGIAN-------ESKK 187
Query: 246 IMGLQFHPE 254
+ G QFHPE
Sbjct: 188 LYGAQFHPE 196
>pdb|2VPI|A Chain A, Human Gmp Synthetase - Glutaminase Domain
pdb|2VPI|B Chain B, Human Gmp Synthetase - Glutaminase Domain
Length = 218
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 58/154 (37%), Gaps = 41/154 (26%)
Query: 126 PYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKDTP 185
P LGIC G Q++N GGT++ +K V +I DN
Sbjct: 98 PVLGICYGMQMMNKVFGGTVH--------KKSVREDGVFNISVDN--------------- 134
Query: 186 LHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKF 245
F+ +EE + + H V ++A F +A + + ++ G + E K
Sbjct: 135 TCSLFRGLQKEEVVLL----THGDSVDKVADGFKVVARSGN-IVAGIAN-------ESKK 182
Query: 246 IMGLQFHPERMRRPDSDE------FDYPGCPSAY 273
+ G QFHPE + +D GC +
Sbjct: 183 LYGAQFHPEVGLTENGKVILKNFLYDIAGCSGTF 216
>pdb|1KA9|H Chain H, Imidazole Glycerol Phosphate Synthase
Length = 200
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 121 LERNIPYLGICRGSQVL 137
LER +P+LGIC G QVL
Sbjct: 72 LERGLPFLGICVGMQVL 88
>pdb|1E7K|A Chain A, Crystal Structure Of The Spliceosomal 15.5kd Protein Bound
To A U4 Snrna Fragment
pdb|1E7K|B Chain B, Crystal Structure Of The Spliceosomal 15.5kd Protein Bound
To A U4 Snrna Fragment
Length = 128
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 104 AIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACG 142
A D E I L L LC ++N+PY+ + R Q L ACG
Sbjct: 57 AADAEPLEIILHLPLLCEDKNVPYVFV-RSKQALGRACG 94
>pdb|2OZB|A Chain A, Structure Of A Human Prp31-15.5k-U4 Snrna Complex
pdb|2OZB|D Chain D, Structure Of A Human Prp31-15.5k-U4 Snrna Complex
pdb|3SIU|A Chain A, Structure Of A Hprp31-15.5k-U4atac 5' Stem Loop Complex,
Monomeric Form
pdb|3SIU|D Chain D, Structure Of A Hprp31-15.5k-U4atac 5' Stem Loop Complex,
Monomeric Form
pdb|3SIV|A Chain A, Structure Of A Hprp31-15.5k-U4atac 5' Stem Loop Complex,
Dimeric Form
pdb|3SIV|D Chain D, Structure Of A Hprp31-15.5k-U4atac 5' Stem Loop Complex,
Dimeric Form
pdb|3SIV|G Chain G, Structure Of A Hprp31-15.5k-U4atac 5' Stem Loop Complex,
Dimeric Form
pdb|3SIV|J Chain J, Structure Of A Hprp31-15.5k-U4atac 5' Stem Loop Complex,
Dimeric Form
Length = 130
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 104 AIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACG 142
A D E I L L LC ++N+PY+ + R Q L ACG
Sbjct: 59 AADAEPLEIILHLPLLCEDKNVPYVFV-RSKQALGRACG 96
>pdb|2JNB|A Chain A, Solution Structure Of Rna-Binding Protein 15.5k
Length = 144
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 104 AIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACG 142
A D E I L L LC ++N+PY+ + R Q L ACG
Sbjct: 73 AADAEPLEIILHLPLLCEDKNVPYVFV-RSKQALGRACG 110
>pdb|1T36|B Chain B, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|D Chain D, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|F Chain F, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|H Chain H, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
Length = 382
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 106 DKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACG 142
D D + + LE +IP GIC G Q+L +A G
Sbjct: 244 DPAPDDYAITAIQKFLETDIPVFGICLGHQLLALASG 280
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,919,423
Number of Sequences: 62578
Number of extensions: 542881
Number of successful extensions: 1214
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1195
Number of HSP's gapped (non-prelim): 22
length of query: 369
length of database: 14,973,337
effective HSP length: 100
effective length of query: 269
effective length of database: 8,715,537
effective search space: 2344479453
effective search space used: 2344479453
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)