Query 017539
Match_columns 369
No_of_seqs 271 out of 1837
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 09:28:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017539.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017539hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2071 Predicted glutamine am 100.0 8.2E-51 1.8E-55 374.3 20.7 236 9-283 2-241 (243)
2 PRK11366 puuD gamma-glutamyl-g 100.0 8.2E-44 1.8E-48 337.8 25.4 237 9-285 6-249 (254)
3 PF07722 Peptidase_C26: Peptid 100.0 2.1E-44 4.5E-49 334.6 13.5 210 11-254 1-217 (217)
4 cd01745 GATase1_2 Subgroup of 100.0 4.7E-33 1E-37 253.1 17.9 185 13-277 1-189 (189)
5 PRK08007 para-aminobenzoate sy 100.0 1.6E-31 3.4E-36 242.9 17.1 182 13-278 2-186 (187)
6 PRK06186 hypothetical protein; 100.0 4.5E-31 9.7E-36 245.2 19.3 174 60-282 50-228 (229)
7 TIGR00566 trpG_papA glutamine 100.0 3.7E-30 8.1E-35 234.0 18.8 182 13-278 2-187 (188)
8 TIGR00888 guaA_Nterm GMP synth 100.0 3.9E-30 8.4E-35 233.4 17.9 170 34-279 14-183 (188)
9 PRK05670 anthranilate synthase 100.0 5.8E-30 1.3E-34 232.6 18.5 184 13-280 2-188 (189)
10 PRK07765 para-aminobenzoate sy 100.0 1.4E-29 2.9E-34 234.8 20.3 189 12-281 2-193 (214)
11 PRK00758 GMP synthase subunit 100.0 9.6E-30 2.1E-34 230.1 17.0 181 13-282 2-183 (184)
12 PRK06774 para-aminobenzoate sy 100.0 8E-30 1.7E-34 232.1 16.5 182 13-278 2-190 (191)
13 cd01742 GATase1_GMP_Synthase T 100.0 2.8E-29 6.1E-34 225.8 18.2 169 33-277 13-181 (181)
14 PRK07649 para-aminobenzoate/an 100.0 3.6E-29 7.9E-34 228.8 18.4 185 13-281 2-189 (195)
15 cd01744 GATase1_CPSase Small c 100.0 6.3E-29 1.4E-33 223.9 19.2 165 33-277 11-178 (178)
16 TIGR01368 CPSaseIIsmall carbam 100.0 9.7E-29 2.1E-33 244.3 21.8 168 33-281 186-357 (358)
17 COG0512 PabA Anthranilate/para 100.0 2.2E-29 4.7E-34 225.8 15.3 185 11-279 2-190 (191)
18 CHL00101 trpG anthranilate syn 100.0 5.5E-29 1.2E-33 226.6 17.5 183 13-279 2-188 (190)
19 PRK12564 carbamoyl phosphate s 100.0 1.4E-28 3E-33 243.5 21.5 168 32-279 189-359 (360)
20 PLN02335 anthranilate synthase 100.0 1E-28 2.2E-33 230.2 18.3 196 10-286 18-219 (222)
21 PRK05380 pyrG CTP synthetase; 100.0 1.3E-28 2.9E-33 251.3 20.2 222 10-285 288-531 (533)
22 PRK08857 para-aminobenzoate sy 100.0 1.4E-28 3E-33 224.5 18.2 182 13-278 2-191 (193)
23 PRK05637 anthranilate synthase 100.0 3.4E-28 7.3E-33 224.5 20.5 194 11-281 2-206 (208)
24 PRK06895 putative anthranilate 100.0 2.4E-28 5.2E-33 222.3 17.9 184 12-279 3-188 (190)
25 cd01743 GATase1_Anthranilate_S 100.0 3.2E-28 6.8E-33 220.0 18.1 182 13-277 1-184 (184)
26 cd01746 GATase1_CTP_Synthase T 100.0 5.7E-28 1.2E-32 226.8 18.2 213 11-277 1-235 (235)
27 cd01747 GATase1_Glutamyl_Hydro 100.0 2.8E-28 6.1E-33 233.7 16.0 204 13-270 1-229 (273)
28 PLN02347 GMP synthetase 100.0 3.8E-28 8.2E-33 251.4 17.6 197 7-281 7-203 (536)
29 TIGR00337 PyrG CTP synthase. C 100.0 7E-28 1.5E-32 245.9 18.6 216 10-279 289-525 (525)
30 COG0505 CarA Carbamoylphosphat 100.0 9.3E-28 2E-32 231.8 18.4 173 33-285 192-367 (368)
31 PRK00074 guaA GMP synthase; Re 100.0 3.2E-28 6.9E-33 251.7 14.4 185 10-278 3-187 (511)
32 PRK12838 carbamoyl phosphate s 100.0 3.4E-27 7.3E-32 233.0 20.6 171 31-282 178-352 (354)
33 COG0518 GuaA GMP synthase - Gl 99.9 1.8E-26 3.9E-31 211.2 15.1 187 11-278 2-191 (198)
34 PRK13566 anthranilate synthase 99.9 8.7E-26 1.9E-30 240.7 21.1 192 10-281 526-719 (720)
35 CHL00197 carA carbamoyl-phosph 99.9 1.6E-25 3.4E-30 222.7 20.9 169 33-283 205-377 (382)
36 PRK14607 bifunctional glutamin 99.9 5.3E-26 1.1E-30 236.4 16.7 186 12-281 1-190 (534)
37 cd01741 GATase1_1 Subgroup of 99.9 2.3E-25 5.1E-30 201.6 17.7 165 31-254 13-180 (188)
38 PRK09065 glutamine amidotransf 99.9 2.7E-25 5.8E-30 209.1 17.8 157 37-257 30-190 (237)
39 TIGR01815 TrpE-clade3 anthrani 99.9 4.8E-25 1E-29 234.7 20.7 193 9-281 515-709 (717)
40 PF00117 GATase: Glutamine ami 99.9 1.9E-25 4E-30 202.4 15.0 177 31-278 10-190 (192)
41 PLN02771 carbamoyl-phosphate s 99.9 7.8E-25 1.7E-29 218.6 19.4 155 33-261 253-410 (415)
42 PRK09522 bifunctional glutamin 99.9 3.1E-25 6.6E-30 229.9 15.4 186 11-281 2-191 (531)
43 PLN02889 oxo-acid-lyase/anthra 99.9 6.5E-25 1.4E-29 236.7 17.9 199 12-287 83-342 (918)
44 PRK07567 glutamine amidotransf 99.9 1.5E-24 3.3E-29 204.6 18.0 171 32-257 18-194 (242)
45 PRK05665 amidotransferase; Pro 99.9 5.4E-24 1.2E-28 200.6 18.2 138 60-258 54-191 (240)
46 PRK06490 glutamine amidotransf 99.9 1.2E-23 2.7E-28 198.1 20.1 179 8-257 5-183 (239)
47 COG0504 PyrG CTP synthase (UTP 99.9 6E-24 1.3E-28 212.0 15.9 156 114-286 362-532 (533)
48 TIGR01823 PabB-fungal aminodeo 99.9 2.1E-23 4.6E-28 223.6 19.7 200 9-287 4-211 (742)
49 COG0118 HisH Glutamine amidotr 99.9 1.6E-23 3.6E-28 189.0 15.8 193 10-280 1-203 (204)
50 PLN02327 CTP synthase 99.9 2.3E-23 5E-28 213.3 18.4 175 58-286 357-552 (557)
51 PRK13525 glutamine amidotransf 99.9 4.9E-23 1.1E-27 187.5 17.0 188 10-281 1-188 (189)
52 KOG0370 Multifunctional pyrimi 99.9 1.9E-23 4.1E-28 218.7 15.7 196 32-311 184-382 (1435)
53 PRK08250 glutamine amidotransf 99.9 1.2E-22 2.6E-27 190.9 19.1 166 32-257 15-184 (235)
54 PRK07053 glutamine amidotransf 99.9 5.4E-23 1.2E-27 193.2 16.2 161 34-257 19-182 (234)
55 PRK13152 hisH imidazole glycer 99.9 4.4E-22 9.5E-27 182.7 15.6 179 33-278 14-200 (201)
56 PRK13141 hisH imidazole glycer 99.9 2.8E-22 6.1E-27 184.3 13.1 178 32-281 13-203 (205)
57 PRK13143 hisH imidazole glycer 99.9 5.6E-21 1.2E-25 175.3 19.1 193 12-281 2-199 (200)
58 PRK13146 hisH imidazole glycer 99.9 4.3E-22 9.3E-27 184.0 11.3 190 12-279 3-207 (209)
59 CHL00188 hisH imidazole glycer 99.9 6.3E-22 1.4E-26 183.0 12.3 193 11-279 2-209 (210)
60 PRK13527 glutamine amidotransf 99.9 4.7E-21 1E-25 175.7 16.4 168 34-281 19-198 (200)
61 PRK13181 hisH imidazole glycer 99.9 1.7E-21 3.7E-26 178.5 12.3 172 33-278 14-198 (199)
62 PRK13170 hisH imidazole glycer 99.9 7.3E-21 1.6E-25 174.1 16.3 175 34-278 16-195 (196)
63 cd01748 GATase1_IGP_Synthase T 99.9 1.5E-21 3.3E-26 178.5 11.8 172 34-277 14-198 (198)
64 KOG1622 GMP synthase [Nucleoti 99.9 2.9E-21 6.2E-26 190.2 13.3 162 35-262 33-194 (552)
65 KOG0026 Anthranilate synthase, 99.8 1.4E-20 3.1E-25 163.9 12.5 193 9-282 18-216 (223)
66 PRK14004 hisH imidazole glycer 99.8 5.2E-20 1.1E-24 170.3 13.6 178 33-279 14-209 (210)
67 TIGR01855 IMP_synth_hisH imida 99.8 6.9E-20 1.5E-24 167.6 12.8 171 34-279 14-196 (196)
68 KOG1559 Gamma-glutamyl hydrola 99.8 6.2E-20 1.3E-24 168.7 11.5 210 8-273 50-287 (340)
69 cd01749 GATase1_PB Glutamine A 99.8 1.3E-19 2.9E-24 164.0 12.6 172 33-277 12-183 (183)
70 TIGR01737 FGAM_synth_I phospho 99.8 5.3E-19 1.2E-23 165.4 16.3 199 12-279 2-226 (227)
71 PRK13142 hisH imidazole glycer 99.8 4.2E-19 9E-24 161.7 13.0 170 32-279 13-187 (192)
72 TIGR03800 PLP_synth_Pdx2 pyrid 99.8 1.2E-18 2.5E-23 158.1 15.3 172 33-278 13-184 (184)
73 PLN02617 imidazole glycerol ph 99.8 4.7E-18 1E-22 176.3 17.0 199 9-282 5-212 (538)
74 PLN02832 glutamine amidotransf 99.8 1.5E-17 3.4E-22 156.7 18.7 200 11-285 2-219 (248)
75 KOG2387 CTP synthase (UTP-ammo 99.8 4.4E-18 9.5E-23 167.5 14.7 180 55-281 355-548 (585)
76 PRK03619 phosphoribosylformylg 99.8 3.1E-17 6.7E-22 152.7 18.2 198 12-278 2-218 (219)
77 KOG3179 Predicted glutamine sy 99.7 1.8E-16 3.9E-21 142.6 11.9 141 59-257 55-196 (245)
78 KOG1224 Para-aminobenzoate (PA 99.7 3.3E-16 7.1E-21 157.1 11.7 197 11-283 15-220 (767)
79 PRK05368 homoserine O-succinyl 99.6 6.3E-14 1.4E-18 135.8 15.8 137 62-257 98-240 (302)
80 PRK01175 phosphoribosylformylg 99.5 1.3E-12 2.9E-17 124.6 18.6 223 10-280 3-257 (261)
81 PRK13526 glutamine amidotransf 99.5 1.9E-12 4E-17 116.6 15.8 169 11-278 3-178 (179)
82 KOG0623 Glutamine amidotransfe 99.4 4E-13 8.7E-18 129.2 10.5 177 33-278 16-206 (541)
83 COG0311 PDX2 Predicted glutami 99.4 9.6E-12 2.1E-16 111.0 14.7 183 11-281 1-191 (194)
84 PF01174 SNO: SNO glutamine am 99.4 2.4E-12 5.3E-17 115.8 10.8 167 32-281 9-187 (188)
85 cd01740 GATase1_FGAR_AT Type 1 99.4 7.8E-12 1.7E-16 117.9 14.7 178 33-259 14-218 (238)
86 COG0047 PurL Phosphoribosylfor 99.4 2.5E-11 5.4E-16 111.8 16.9 201 10-279 2-229 (231)
87 PF13507 GATase_5: CobB/CobQ-l 99.1 4.8E-09 1E-13 100.1 15.3 105 10-140 1-106 (259)
88 TIGR01857 FGAM-synthase phosph 99.0 1.3E-08 2.8E-13 114.1 17.7 226 8-278 975-1237(1239)
89 PLN03206 phosphoribosylformylg 98.6 6.6E-07 1.4E-11 101.3 16.4 210 9-258 1036-1274(1307)
90 TIGR01735 FGAM_synt phosphorib 98.6 2.9E-07 6.3E-12 104.6 12.3 202 8-258 1053-1282(1310)
91 PRK05297 phosphoribosylformylg 98.6 9.4E-07 2E-11 100.7 16.0 201 9-258 1034-1261(1290)
92 cd03130 GATase1_CobB Type 1 gl 98.6 2E-07 4.3E-12 85.6 8.5 83 28-141 10-92 (198)
93 cd01750 GATase1_CobQ Type 1 gl 98.5 2E-07 4.4E-12 85.2 7.1 76 34-142 15-90 (194)
94 KOG3210 Imidazoleglycerol-phos 98.5 5.5E-07 1.2E-11 79.5 9.2 101 1-142 1-109 (226)
95 PRK01077 cobyrinic acid a,c-di 98.4 1.8E-05 3.9E-10 81.4 18.5 94 11-141 246-339 (451)
96 PF04204 HTS: Homoserine O-suc 98.4 1.2E-05 2.5E-10 78.0 14.8 137 63-258 98-240 (298)
97 cd03131 GATase1_HTS Type 1 glu 98.3 1.2E-06 2.6E-11 79.0 5.2 82 114-222 88-174 (175)
98 PHA03366 FGAM-synthase; Provis 98.2 1.8E-05 3.9E-10 90.4 14.3 105 8-140 1026-1133(1304)
99 TIGR00379 cobB cobyrinic acid 98.1 6.8E-06 1.5E-10 84.5 8.6 94 11-141 245-338 (449)
100 PRK06278 cobyrinic acid a,c-di 98.1 4.5E-06 9.8E-11 86.2 7.1 80 12-141 2-82 (476)
101 TIGR01739 tegu_FGAM_synt herpe 98.1 4.5E-05 9.8E-10 86.7 15.4 106 8-140 927-1034(1202)
102 PRK13896 cobyrinic acid a,c-di 98.1 5.9E-05 1.3E-09 77.2 14.6 92 11-141 234-325 (433)
103 PF07685 GATase_3: CobB/CobQ-l 98.1 1.6E-05 3.6E-10 70.3 9.1 57 60-142 4-60 (158)
104 cd03146 GAT1_Peptidase_E Type 98.0 1.4E-05 3E-10 74.1 6.7 100 9-140 30-130 (212)
105 TIGR01001 metA homoserine O-su 98.0 0.00013 2.8E-09 70.6 13.1 137 62-258 98-240 (300)
106 PRK00784 cobyric acid synthase 97.9 1.8E-05 3.8E-10 82.3 6.1 76 33-141 266-342 (488)
107 cd01653 GATase1 Type 1 glutami 97.9 7.5E-05 1.6E-09 58.5 7.9 78 32-137 15-92 (115)
108 cd03128 GAT_1 Type 1 glutamine 97.6 0.00022 4.8E-09 53.3 7.1 77 33-137 16-92 (92)
109 TIGR00313 cobQ cobyric acid sy 97.4 0.00011 2.5E-09 76.0 3.6 28 114-141 309-336 (475)
110 COG1797 CobB Cobyrinic acid a, 97.3 0.0067 1.4E-07 61.6 14.3 192 11-280 246-450 (451)
111 PRK11780 isoprenoid biosynthes 97.2 0.0039 8.4E-08 58.2 11.7 31 111-141 115-145 (217)
112 PRK05282 (alpha)-aspartyl dipe 97.2 0.00099 2.2E-08 62.8 6.9 101 10-142 31-131 (233)
113 cd03169 GATase1_PfpI_1 Type 1 97.0 0.0026 5.5E-08 57.0 7.8 28 113-140 97-124 (180)
114 KOG1907 Phosphoribosylformylgl 97.0 0.004 8.7E-08 67.4 9.8 205 6-258 1054-1287(1320)
115 cd03144 GATase1_ScBLP_like Typ 96.9 0.00057 1.2E-08 57.4 2.3 24 114-137 67-90 (114)
116 cd03129 GAT1_Peptidase_E_like 96.8 0.011 2.3E-07 54.5 10.3 100 10-140 29-130 (210)
117 cd03133 GATase1_ES1 Type 1 glu 96.5 0.011 2.3E-07 55.1 8.1 31 112-142 113-143 (213)
118 cd03147 GATase1_Ydr533c_like T 96.4 0.016 3.4E-07 54.6 8.8 29 112-140 115-143 (231)
119 COG1492 CobQ Cobyric acid synt 96.3 0.018 3.8E-07 59.4 9.0 67 42-141 276-342 (486)
120 COG3442 Predicted glutamine am 96.1 0.0051 1.1E-07 57.0 3.6 76 37-141 29-104 (250)
121 cd03148 GATase1_EcHsp31_like T 96.1 0.027 5.8E-07 53.1 8.4 29 112-140 117-145 (232)
122 TIGR01382 PfpI intracellular p 96.1 0.0091 2E-07 52.4 4.9 28 113-140 81-108 (166)
123 PF09825 BPL_N: Biotin-protein 96.0 0.27 5.9E-06 49.4 15.5 50 62-139 48-97 (367)
124 cd03134 GATase1_PfpI_like A ty 96.0 0.015 3.2E-07 51.0 5.8 28 113-140 83-110 (165)
125 PRK04155 chaperone protein Hch 95.9 0.03 6.6E-07 54.4 8.2 29 112-140 168-196 (287)
126 cd03132 GATase1_catalase Type 95.7 0.046 1E-06 46.8 7.8 80 33-140 19-111 (142)
127 cd03137 GATase1_AraC_1 AraC tr 95.4 0.078 1.7E-06 47.4 8.4 28 113-140 85-112 (187)
128 PRK11574 oxidative-stress-resi 95.3 0.15 3.2E-06 46.2 9.7 27 113-139 88-114 (196)
129 PF01965 DJ-1_PfpI: DJ-1/PfpI 95.1 0.016 3.5E-07 50.2 2.7 30 111-140 58-87 (147)
130 cd03145 GAT1_cyanophycinase Ty 94.9 0.063 1.4E-06 49.9 6.5 100 10-140 29-133 (217)
131 cd03140 GATase1_PfpI_3 Type 1 94.9 0.068 1.5E-06 47.4 6.4 28 113-140 80-107 (170)
132 COG1897 MetA Homoserine trans- 94.7 0.11 2.5E-06 49.3 7.5 110 115-258 126-241 (307)
133 cd03141 GATase1_Hsp31_like Typ 94.3 0.067 1.4E-06 49.8 5.0 28 113-140 112-139 (221)
134 TIGR02069 cyanophycinase cyano 94.3 0.098 2.1E-06 49.8 6.2 100 10-140 28-132 (250)
135 COG0693 ThiJ Putative intracel 94.1 0.075 1.6E-06 47.7 4.7 28 113-140 88-115 (188)
136 cd03135 GATase1_DJ-1 Type 1 gl 93.7 0.098 2.1E-06 45.4 4.5 28 113-140 82-109 (163)
137 PF03575 Peptidase_S51: Peptid 93.6 0.068 1.5E-06 46.8 3.5 77 33-136 4-81 (154)
138 cd03138 GATase1_AraC_2 AraC tr 93.6 0.15 3.1E-06 46.0 5.7 28 113-140 93-120 (195)
139 PRK11249 katE hydroperoxidase 92.4 0.5 1.1E-05 51.7 8.5 97 11-140 598-707 (752)
140 cd03139 GATase1_PfpI_2 Type 1 92.4 0.45 9.8E-06 42.1 7.0 28 113-140 83-110 (183)
141 TIGR01383 not_thiJ DJ-1 family 92.2 0.22 4.7E-06 44.1 4.7 28 113-140 85-112 (179)
142 PRK03378 ppnK inorganic polyph 92.0 0.6 1.3E-05 45.6 7.8 89 6-134 1-97 (292)
143 KOG2764 Putative transcription 92.0 1.3 2.8E-05 41.7 9.5 76 35-142 25-117 (247)
144 PRK03372 ppnK inorganic polyph 91.2 0.83 1.8E-05 44.9 7.8 89 5-134 1-106 (306)
145 cd03136 GATase1_AraC_ArgR_like 91.1 0.46 9.9E-06 42.4 5.6 28 113-140 84-111 (185)
146 TIGR02667 moaB_proteo molybden 89.6 1.7 3.6E-05 38.7 7.8 68 9-77 3-77 (163)
147 TIGR00177 molyb_syn molybdenum 89.4 1.7 3.7E-05 37.6 7.6 65 11-75 1-78 (144)
148 PRK09393 ftrA transcriptional 89.4 0.94 2E-05 44.2 6.6 27 114-140 96-122 (322)
149 PRK04539 ppnK inorganic polyph 88.8 2.1 4.6E-05 41.8 8.6 88 7-134 2-102 (296)
150 PF13278 DUF4066: Putative ami 87.9 0.48 1E-05 41.5 3.1 27 114-140 83-109 (166)
151 PRK02155 ppnK NAD(+)/NADH kina 86.0 3.2 6.9E-05 40.5 8.0 88 7-134 2-97 (291)
152 COG3340 PepE Peptidase E [Amin 85.7 7.2 0.00016 36.5 9.6 74 34-134 54-128 (224)
153 PRK02649 ppnK inorganic polyph 84.7 3.3 7.1E-05 40.7 7.4 83 11-133 2-101 (305)
154 PRK01215 competence damage-ind 84.1 5 0.00011 38.6 8.2 66 9-74 2-73 (264)
155 PRK14077 pnk inorganic polypho 83.7 4.7 0.0001 39.3 7.9 84 10-134 10-98 (287)
156 PRK01911 ppnK inorganic polyph 83.3 4 8.7E-05 39.8 7.3 83 12-134 2-98 (292)
157 cd00758 MoCF_BD MoCF_BD: molyb 80.1 7.1 0.00015 33.2 6.9 64 13-76 2-71 (133)
158 cd03522 MoeA_like MoeA_like. T 79.5 7.4 0.00016 38.4 7.7 68 10-77 159-233 (312)
159 PRK10680 molybdopterin biosynt 79.5 6.2 0.00013 40.4 7.4 68 10-77 177-257 (411)
160 COG4242 CphB Cyanophycinase an 77.9 6 0.00013 37.8 6.1 85 28-139 66-155 (293)
161 PRK14690 molybdopterin biosynt 77.8 7.7 0.00017 39.8 7.5 67 10-76 193-272 (419)
162 PRK09417 mogA molybdenum cofac 77.7 5.3 0.00012 36.6 5.7 68 10-77 3-80 (193)
163 COG0303 MoeA Molybdopterin bio 77.3 13 0.00028 38.1 8.8 66 10-75 176-254 (404)
164 cd00886 MogA_MoaB MogA_MoaB fa 76.1 12 0.00026 32.6 7.3 65 12-76 2-74 (152)
165 COG0521 MoaB Molybdopterin bio 76.1 12 0.00026 33.7 7.3 65 13-77 10-81 (169)
166 cd00887 MoeA MoeA family. Memb 76.0 8.4 0.00018 39.1 7.2 67 10-76 168-247 (394)
167 PRK14497 putative molybdopteri 75.8 9.1 0.0002 40.7 7.5 66 10-76 179-258 (546)
168 cd06305 PBP1_methylthioribose_ 73.9 17 0.00038 33.3 8.3 58 13-72 2-64 (273)
169 cd00885 cinA Competence-damage 72.4 16 0.00035 32.6 7.3 53 22-74 12-69 (170)
170 PRK14498 putative molybdopteri 71.8 12 0.00025 40.4 7.4 68 10-77 186-266 (633)
171 cd06295 PBP1_CelR Ligand bindi 71.4 27 0.00058 32.3 9.0 61 12-72 5-73 (275)
172 cd06281 PBP1_LacI_like_5 Ligan 71.4 25 0.00054 32.4 8.8 59 12-72 1-64 (269)
173 PRK01231 ppnK inorganic polyph 70.8 16 0.00036 35.6 7.5 84 11-134 5-96 (295)
174 cd06318 PBP1_ABC_sugar_binding 69.4 22 0.00048 32.9 8.0 58 13-72 2-64 (282)
175 PRK14491 putative bifunctional 69.1 16 0.00036 39.2 7.7 67 10-76 367-446 (597)
176 cd06292 PBP1_LacI_like_10 Liga 68.5 29 0.00063 31.9 8.5 59 12-72 1-64 (273)
177 PF07085 DRTGG: DRTGG domain; 68.3 8.4 0.00018 31.2 4.2 38 34-74 34-72 (105)
178 cd06282 PBP1_GntR_like_2 Ligan 68.3 28 0.0006 31.7 8.3 58 13-72 2-64 (266)
179 PRK03708 ppnK inorganic polyph 68.1 15 0.00033 35.4 6.6 82 12-134 2-90 (277)
180 PRK13017 dihydroxy-acid dehydr 68.0 13 0.00028 39.8 6.5 72 3-74 40-131 (596)
181 cd06274 PBP1_FruR Ligand bindi 67.9 31 0.00067 31.6 8.5 58 13-72 2-64 (264)
182 smart00852 MoCF_biosynth Proba 67.5 24 0.00053 29.7 7.1 50 27-76 16-70 (135)
183 PRK02645 ppnK inorganic polyph 67.2 22 0.00047 34.9 7.6 82 11-132 4-89 (305)
184 PLN02935 Bifunctional NADH kin 67.1 18 0.00039 38.0 7.2 85 10-134 194-296 (508)
185 COG4285 Uncharacterized conser 66.8 7.1 0.00015 36.6 3.8 27 114-145 72-98 (253)
186 PRK02231 ppnK inorganic polyph 64.4 21 0.00045 34.5 6.7 64 33-133 4-75 (272)
187 cd06279 PBP1_LacI_like_3 Ligan 64.1 35 0.00075 31.9 8.2 60 13-72 2-65 (283)
188 cd01545 PBP1_SalR Ligand-bindi 64.1 43 0.00093 30.6 8.7 58 13-72 2-65 (270)
189 cd06299 PBP1_LacI_like_13 Liga 64.1 41 0.00089 30.7 8.5 58 13-72 2-64 (265)
190 PLN02727 NAD kinase 64.1 23 0.00049 39.9 7.6 84 10-134 678-777 (986)
191 PLN02493 probable peroxisomal 63.9 27 0.00058 35.3 7.6 87 33-146 214-305 (367)
192 PRK03673 hypothetical protein; 63.2 26 0.00056 35.8 7.4 64 10-73 1-70 (396)
193 cd06301 PBP1_rhizopine_binding 63.2 36 0.00078 31.3 8.0 58 13-72 2-65 (272)
194 cd06322 PBP1_ABC_sugar_binding 62.3 42 0.00091 30.7 8.3 59 12-72 1-64 (267)
195 cd06267 PBP1_LacI_sugar_bindin 62.0 44 0.00096 30.0 8.3 58 13-72 2-64 (264)
196 cd06273 PBP1_GntR_like_1 This 61.3 45 0.00097 30.5 8.3 58 13-72 2-64 (268)
197 cd01542 PBP1_TreR_like Ligand- 61.2 44 0.00095 30.4 8.2 58 13-72 2-64 (259)
198 cd06271 PBP1_AglR_RafR_like Li 61.1 49 0.0011 30.1 8.4 61 12-72 1-68 (268)
199 cd06310 PBP1_ABC_sugar_binding 61.0 48 0.001 30.4 8.5 59 12-72 1-66 (273)
200 cd06300 PBP1_ABC_sugar_binding 60.6 45 0.00097 30.7 8.2 59 12-72 1-69 (272)
201 PRK14076 pnk inorganic polypho 60.2 29 0.00062 37.1 7.5 83 12-134 292-382 (569)
202 cd01540 PBP1_arabinose_binding 60.2 42 0.00092 31.1 8.0 57 13-72 2-63 (289)
203 cd01575 PBP1_GntR Ligand-bindi 59.7 45 0.00097 30.4 7.9 58 13-72 2-64 (268)
204 PF00532 Peripla_BP_1: Peripla 59.4 35 0.00076 32.5 7.4 59 11-72 2-65 (279)
205 cd06283 PBP1_RegR_EndR_KdgR_li 59.4 48 0.001 30.1 8.1 58 13-72 2-64 (267)
206 cd06284 PBP1_LacI_like_6 Ligan 58.7 57 0.0012 29.6 8.5 58 13-72 2-64 (267)
207 cd01537 PBP1_Repressors_Sugar_ 58.7 52 0.0011 29.5 8.1 58 13-72 2-64 (264)
208 PF01513 NAD_kinase: ATP-NAD k 58.6 10 0.00022 36.7 3.4 21 114-134 90-110 (285)
209 PRK10355 xylF D-xylose transpo 57.9 63 0.0014 31.5 9.0 61 10-72 25-90 (330)
210 cd01536 PBP1_ABC_sugar_binding 57.7 58 0.0013 29.4 8.3 59 12-72 1-64 (267)
211 TIGR02634 xylF D-xylose ABC tr 57.4 56 0.0012 31.2 8.4 50 23-72 9-63 (302)
212 PRK11303 DNA-binding transcrip 57.3 77 0.0017 30.2 9.4 61 10-72 61-126 (328)
213 cd06309 PBP1_YtfQ_like Peripla 56.8 52 0.0011 30.3 7.9 58 13-72 2-64 (273)
214 PLN02929 NADH kinase 56.6 33 0.00071 33.8 6.6 59 33-133 38-96 (301)
215 cd01538 PBP1_ABC_xylose_bindin 56.4 57 0.0012 30.6 8.2 58 13-72 2-64 (288)
216 cd06324 PBP1_ABC_sugar_binding 56.2 60 0.0013 30.8 8.4 59 13-72 2-67 (305)
217 cd06277 PBP1_LacI_like_1 Ligan 55.7 68 0.0015 29.4 8.5 50 23-72 13-67 (268)
218 PRK00911 dihydroxy-acid dehydr 54.7 32 0.00069 36.6 6.5 42 9-50 30-73 (552)
219 PRK10014 DNA-binding transcrip 54.3 84 0.0018 30.1 9.2 60 11-72 65-129 (342)
220 COG1609 PurR Transcriptional r 54.3 75 0.0016 31.2 8.9 60 10-71 58-122 (333)
221 PLN02699 Bifunctional molybdop 54.2 46 0.001 36.3 7.9 66 10-75 181-261 (659)
222 PF06283 ThuA: Trehalose utili 53.9 20 0.00044 32.8 4.5 87 12-133 1-90 (217)
223 cd06319 PBP1_ABC_sugar_binding 53.9 73 0.0016 29.2 8.4 58 13-72 2-64 (277)
224 cd06302 PBP1_LsrB_Quorum_Sensi 53.9 66 0.0014 30.4 8.2 58 13-72 2-65 (298)
225 COG4090 Uncharacterized protei 53.8 37 0.00081 29.3 5.6 20 123-144 115-134 (154)
226 cd01541 PBP1_AraR Ligand-bindi 53.8 71 0.0015 29.3 8.3 58 13-72 2-64 (273)
227 cd01539 PBP1_GGBP Periplasmic 53.6 66 0.0014 30.5 8.2 59 12-72 1-66 (303)
228 cd06298 PBP1_CcpA_like Ligand- 53.4 63 0.0014 29.4 7.8 58 13-72 2-64 (268)
229 PRK08811 uroporphyrinogen-III 53.2 33 0.00071 32.8 6.0 63 1-72 9-78 (266)
230 TIGR00110 ilvD dihydroxy-acid 53.0 41 0.00089 35.7 7.0 42 9-50 10-53 (535)
231 cd06320 PBP1_allose_binding Pe 52.3 80 0.0017 29.0 8.4 58 13-72 2-66 (275)
232 PF02514 CobN-Mg_chel: CobN/Ma 52.2 44 0.00096 38.6 7.7 64 8-72 69-140 (1098)
233 cd06285 PBP1_LacI_like_7 Ligan 52.1 73 0.0016 29.1 8.1 58 13-72 2-64 (265)
234 cd06315 PBP1_ABC_sugar_binding 51.8 1.1E+02 0.0025 28.4 9.4 59 12-72 2-65 (280)
235 PF13407 Peripla_BP_4: Peripla 51.7 49 0.0011 30.2 6.8 83 13-133 1-89 (257)
236 COG0061 nadF NAD kinase [Coenz 51.5 41 0.00089 32.5 6.4 82 12-133 2-88 (281)
237 KOG0538 Glycolate oxidase [Ene 50.6 44 0.00096 33.0 6.3 82 34-144 214-302 (363)
238 cd06308 PBP1_sensor_kinase_lik 50.1 77 0.0017 29.1 7.9 59 12-72 1-65 (270)
239 COG4977 Transcriptional regula 50.1 46 0.001 33.1 6.5 27 114-140 98-124 (328)
240 cd06278 PBP1_LacI_like_2 Ligan 50.0 89 0.0019 28.3 8.2 58 13-72 2-63 (266)
241 cd06316 PBP1_ABC_sugar_binding 50.0 87 0.0019 29.3 8.4 58 13-72 2-65 (294)
242 PRK03604 moaC bifunctional mol 49.9 70 0.0015 31.6 7.8 66 12-77 157-229 (312)
243 PRK03501 ppnK inorganic polyph 49.3 54 0.0012 31.5 6.8 45 12-72 4-48 (264)
244 cd05014 SIS_Kpsf KpsF-like pro 49.2 59 0.0013 26.6 6.3 19 114-132 64-82 (128)
245 cd06321 PBP1_ABC_sugar_binding 48.8 80 0.0017 29.0 7.8 58 13-72 2-66 (271)
246 PF10087 DUF2325: Uncharacteri 48.5 1.4E+02 0.0029 23.7 9.3 41 32-72 13-57 (97)
247 cd06297 PBP1_LacI_like_12 Liga 48.5 89 0.0019 28.8 8.1 58 13-72 2-64 (269)
248 TIGR00288 conserved hypothetic 48.2 49 0.0011 29.5 5.8 62 32-131 69-136 (160)
249 PF01070 FMN_dh: FMN-dependent 48.2 37 0.00079 34.1 5.6 85 33-146 215-306 (356)
250 cd06270 PBP1_GalS_like Ligand 48.0 98 0.0021 28.3 8.2 58 13-72 2-64 (268)
251 cd06323 PBP1_ribose_binding Pe 47.8 80 0.0017 28.6 7.5 57 13-71 2-63 (268)
252 PRK14987 gluconate operon tran 47.5 1.3E+02 0.0027 28.8 9.2 59 11-71 64-127 (331)
253 PRK10653 D-ribose transporter 46.9 1.4E+02 0.0031 28.0 9.3 61 10-72 26-91 (295)
254 cd06313 PBP1_ABC_sugar_binding 46.9 91 0.002 28.9 7.9 49 24-72 11-64 (272)
255 cd06289 PBP1_MalI_like Ligand- 46.9 1.1E+02 0.0023 27.8 8.2 58 13-72 2-64 (268)
256 PLN02979 glycolate oxidase 46.7 1E+02 0.0022 31.3 8.4 87 33-146 213-304 (366)
257 cd06317 PBP1_ABC_sugar_binding 46.4 1E+02 0.0022 28.1 8.1 59 13-72 2-65 (275)
258 cd06306 PBP1_TorT-like TorT-li 46.2 1.3E+02 0.0027 27.8 8.7 59 12-72 1-66 (268)
259 PRK01372 ddl D-alanine--D-alan 46.0 1.2E+02 0.0027 28.8 8.8 58 12-70 6-63 (304)
260 TIGR02417 fruct_sucro_rep D-fr 45.8 1.5E+02 0.0033 28.2 9.4 60 11-72 61-125 (327)
261 PRK12448 dihydroxy-acid dehydr 45.7 61 0.0013 35.0 7.0 42 9-50 32-75 (615)
262 PLN02699 Bifunctional molybdop 45.6 1.4E+02 0.0031 32.5 10.0 72 6-77 454-538 (659)
263 cd06314 PBP1_tmGBP Periplasmic 45.6 1E+02 0.0022 28.4 7.9 57 13-72 2-64 (271)
264 cd01544 PBP1_GalR Ligand-bindi 45.4 1.1E+02 0.0023 28.3 8.0 57 12-71 1-60 (270)
265 cd06296 PBP1_CatR_like Ligand- 45.2 1E+02 0.0022 28.1 7.9 58 13-72 2-64 (270)
266 PRK13016 dihydroxy-acid dehydr 44.9 48 0.001 35.5 6.1 66 9-74 41-126 (577)
267 cd06312 PBP1_ABC_sugar_binding 44.6 1.1E+02 0.0024 28.1 8.0 59 13-72 2-66 (271)
268 TIGR00200 cinA_nterm competenc 44.4 76 0.0016 32.6 7.3 63 12-74 2-70 (413)
269 COG0036 Rpe Pentose-5-phosphat 42.8 63 0.0014 30.3 5.9 39 34-72 101-140 (220)
270 PRK10703 DNA-binding transcrip 42.3 1.6E+02 0.0035 28.1 9.1 60 11-72 60-124 (341)
271 PRK04885 ppnK inorganic polyph 41.5 63 0.0014 31.1 5.9 68 12-134 2-71 (265)
272 PRK14075 pnk inorganic polypho 41.3 1E+02 0.0023 29.3 7.3 38 29-72 13-50 (256)
273 PF00994 MoCF_biosynth: Probab 41.2 27 0.00059 29.8 3.1 52 24-75 12-68 (144)
274 PRK15408 autoinducer 2-binding 41.2 1.3E+02 0.0028 29.6 8.2 60 11-72 24-89 (336)
275 PF02601 Exonuc_VII_L: Exonucl 41.2 1E+02 0.0022 30.0 7.5 58 9-73 13-86 (319)
276 COG0655 WrbA Multimeric flavod 41.1 94 0.002 28.2 6.8 57 12-70 3-82 (207)
277 COG1570 XseA Exonuclease VII, 41.0 1.2E+02 0.0025 31.5 8.0 58 10-74 135-205 (440)
278 cd06294 PBP1_ycjW_transcriptio 40.3 1.7E+02 0.0037 26.5 8.6 49 24-72 16-69 (270)
279 PTZ00254 40S ribosomal protein 40.3 81 0.0018 30.2 6.3 18 114-131 131-148 (249)
280 cd06311 PBP1_ABC_sugar_binding 39.3 1.5E+02 0.0033 27.2 8.1 58 13-72 2-69 (274)
281 PRK03670 competence damage-ind 39.3 1.2E+02 0.0026 29.0 7.3 52 23-74 14-71 (252)
282 PF05368 NmrA: NmrA-like famil 39.2 1E+02 0.0023 27.9 6.9 40 33-73 35-74 (233)
283 PRK06131 dihydroxy-acid dehydr 38.8 99 0.0021 33.1 7.2 65 10-74 38-122 (571)
284 cd06272 PBP1_hexuronate_repres 38.3 1.6E+02 0.0035 26.7 8.0 57 13-72 2-60 (261)
285 cd01543 PBP1_XylR Ligand-bindi 38.3 1.3E+02 0.0029 27.5 7.5 56 12-71 1-58 (265)
286 TIGR00147 lipid kinase, YegS/R 38.3 1.6E+02 0.0035 28.0 8.3 61 11-72 2-66 (293)
287 PRK09701 D-allose transporter 37.8 1.9E+02 0.0042 27.5 8.8 60 11-72 25-91 (311)
288 PF13380 CoA_binding_2: CoA bi 37.5 84 0.0018 26.0 5.4 91 31-135 16-114 (116)
289 cd01574 PBP1_LacI Ligand-bindi 37.4 2.1E+02 0.0046 25.8 8.7 58 13-72 2-65 (264)
290 TIGR01481 ccpA catabolite cont 37.2 2.3E+02 0.005 26.9 9.2 60 11-72 60-124 (329)
291 PF00834 Ribul_P_3_epim: Ribul 37.2 1.1E+02 0.0025 28.0 6.6 40 33-72 96-136 (201)
292 cd06167 LabA_like LabA_like pr 37.0 1.5E+02 0.0033 24.9 7.1 66 31-133 54-132 (149)
293 cd06293 PBP1_LacI_like_11 Liga 37.0 2.4E+02 0.0051 25.7 8.9 58 13-72 2-64 (269)
294 PRK12419 riboflavin synthase s 36.9 93 0.002 27.7 5.7 58 11-71 11-77 (158)
295 cd02922 FCB2_FMN Flavocytochro 36.9 1.7E+02 0.0036 29.3 8.3 87 32-147 202-298 (344)
296 PRK00549 competence damage-ind 36.5 1.2E+02 0.0027 31.0 7.4 63 12-74 2-70 (414)
297 PRK01185 ppnK inorganic polyph 35.7 1.1E+02 0.0025 29.4 6.7 55 12-72 2-61 (271)
298 COG1929 Glycerate kinase [Carb 35.3 65 0.0014 32.5 4.9 46 56-131 277-323 (378)
299 PRK11197 lldD L-lactate dehydr 35.1 1.1E+02 0.0024 31.1 6.7 84 34-146 236-326 (381)
300 cd06287 PBP1_LacI_like_8 Ligan 34.6 1.8E+02 0.0038 27.1 7.8 47 24-72 19-65 (269)
301 PF09075 STb_secrete: Heat-sta 34.2 8.8 0.00019 26.1 -0.9 17 126-142 31-47 (48)
302 cd01391 Periplasmic_Binding_Pr 34.0 2.2E+02 0.0049 24.8 8.1 59 13-72 2-67 (269)
303 PRK00561 ppnK inorganic polyph 33.4 48 0.001 31.9 3.6 21 114-134 47-67 (259)
304 COG4917 EutP Ethanolamine util 33.4 70 0.0015 27.8 4.2 49 10-62 91-142 (148)
305 PRK14571 D-alanyl-alanine synt 33.3 2.4E+02 0.0052 27.0 8.6 59 12-70 2-60 (299)
306 TIGR02637 RhaS rhamnose ABC tr 33.2 1.8E+02 0.0038 27.4 7.6 49 24-72 10-65 (302)
307 cd03332 LMO_FMN L-Lactate 2-mo 32.4 1.9E+02 0.0042 29.4 7.9 87 33-146 243-334 (383)
308 PRK04761 ppnK inorganic polyph 32.4 50 0.0011 31.5 3.5 21 114-134 39-59 (246)
309 PRK08883 ribulose-phosphate 3- 32.3 89 0.0019 29.1 5.2 40 33-72 97-137 (220)
310 PRK08745 ribulose-phosphate 3- 31.8 1.2E+02 0.0026 28.4 5.9 40 33-72 101-141 (223)
311 PRK08005 epimerase; Validated 30.5 1.7E+02 0.0037 27.2 6.7 40 33-72 97-137 (210)
312 cd06288 PBP1_sucrose_transcrip 30.4 1.1E+02 0.0025 27.7 5.6 59 13-72 2-65 (269)
313 PRK09355 hydroxyethylthiazole 30.4 1.5E+02 0.0032 28.2 6.5 55 6-72 9-63 (263)
314 PF09822 ABC_transp_aux: ABC-t 29.3 3E+02 0.0064 25.9 8.4 59 9-73 145-207 (271)
315 PRK11914 diacylglycerol kinase 28.9 2.8E+02 0.006 26.7 8.3 61 11-72 9-73 (306)
316 COG0710 AroD 3-dehydroquinate 28.7 4.2E+02 0.0091 25.1 9.0 112 14-135 60-187 (231)
317 PRK08227 autoinducer 2 aldolas 28.6 2.2E+02 0.0049 27.4 7.3 61 10-74 141-202 (264)
318 COG0129 IlvD Dihydroxyacid deh 28.5 1.2E+02 0.0027 32.4 5.9 42 9-50 41-84 (575)
319 COG2185 Sbm Methylmalonyl-CoA 28.4 1.5E+02 0.0032 26.0 5.5 58 9-71 11-71 (143)
320 PRK09722 allulose-6-phosphate 28.4 1.3E+02 0.0028 28.3 5.6 40 33-72 99-139 (229)
321 PLN02404 6,7-dimethyl-8-ribity 28.1 1.5E+02 0.0032 25.9 5.5 61 8-71 5-74 (141)
322 PRK13302 putative L-aspartate 28.1 4.1E+02 0.0089 25.3 9.1 16 58-73 62-77 (271)
323 cd06280 PBP1_LacI_like_4 Ligan 27.3 1.3E+02 0.0028 27.4 5.4 58 13-72 2-64 (263)
324 PF02110 HK: Hydroxyethylthiaz 27.2 3.4E+02 0.0074 25.9 8.2 53 8-72 6-58 (246)
325 PRK00286 xseA exodeoxyribonucl 27.0 1.9E+02 0.0042 29.5 7.1 58 9-73 134-203 (438)
326 PLN02535 glycolate oxidase 26.6 2.5E+02 0.0053 28.4 7.5 85 33-146 213-304 (364)
327 PRK04690 murD UDP-N-acetylmura 26.6 2.8E+02 0.006 28.7 8.2 17 33-49 22-38 (468)
328 PRK09147 succinyldiaminopimela 24.9 2.8E+02 0.006 27.5 7.7 38 33-70 129-173 (396)
329 TIGR02405 trehalos_R_Ecol treh 24.6 2E+02 0.0043 27.3 6.3 61 10-72 59-124 (311)
330 PRK10936 TMAO reductase system 24.5 5.8E+02 0.013 24.7 9.8 61 10-72 46-113 (343)
331 cd06304 PBP1_BmpA_like Peripla 24.5 1.4E+02 0.003 27.4 5.1 60 12-72 1-65 (260)
332 TIGR02826 RNR_activ_nrdG3 anae 24.3 1.2E+02 0.0027 26.3 4.3 11 63-73 61-71 (147)
333 cd06307 PBP1_uncharacterized_s 24.3 1.8E+02 0.0038 26.7 5.7 59 12-72 1-67 (275)
334 PRK08211 putative dehydratase; 24.0 3E+02 0.0066 30.0 7.9 42 9-50 60-115 (655)
335 PRK03094 hypothetical protein; 23.9 1.1E+02 0.0024 24.1 3.5 32 34-72 13-44 (80)
336 PRK10423 transcriptional repre 23.7 2.3E+02 0.0049 26.8 6.5 60 11-72 57-121 (327)
337 PRK03767 NAD(P)H:quinone oxido 23.4 3.6E+02 0.0079 24.2 7.5 44 28-71 16-77 (200)
338 cd06303 PBP1_LuxPQ_Quorum_Sens 23.0 2.7E+02 0.0058 25.8 6.8 59 13-72 2-69 (280)
339 cd06275 PBP1_PurR Ligand-bindi 22.9 1.8E+02 0.0039 26.4 5.5 58 13-72 2-64 (269)
340 PF00885 DMRL_synthase: 6,7-di 22.8 1.1E+02 0.0025 26.5 3.8 60 10-71 3-70 (144)
341 TIGR00237 xseA exodeoxyribonuc 22.4 3.6E+02 0.0078 27.7 8.0 57 10-73 129-198 (432)
342 PRK11790 D-3-phosphoglycerate 22.4 3.1E+02 0.0066 28.0 7.4 45 33-77 22-67 (409)
343 cd06291 PBP1_Qymf_like Ligand 22.3 2E+02 0.0043 26.1 5.7 58 13-72 2-64 (265)
344 KOG2044 5'-3' exonuclease HKE1 22.0 64 0.0014 35.8 2.4 24 344-367 150-183 (931)
345 PRK08091 ribulose-phosphate 3- 21.6 2.5E+02 0.0054 26.5 6.1 40 33-72 107-149 (228)
346 PRK10342 glycerate kinase I; P 21.3 1.8E+02 0.0038 29.7 5.3 18 114-131 306-323 (381)
347 PRK15395 methyl-galactoside AB 21.2 5.4E+02 0.012 24.7 8.7 61 10-72 24-90 (330)
348 PF03358 FMN_red: NADPH-depend 20.9 1.5E+02 0.0032 25.0 4.2 48 23-70 12-77 (152)
349 PF13241 NAD_binding_7: Putati 20.9 1.8E+02 0.0039 23.2 4.5 40 33-72 21-69 (103)
350 PF03698 UPF0180: Uncharacteri 20.8 1.3E+02 0.0028 23.7 3.4 33 34-73 13-45 (80)
351 PRK05839 hypothetical protein; 20.5 3.8E+02 0.0082 26.4 7.6 38 33-70 121-162 (374)
352 cd06286 PBP1_CcpB_like Ligand- 20.5 2.1E+02 0.0046 25.8 5.5 58 13-72 2-64 (260)
353 cd06290 PBP1_LacI_like_9 Ligan 20.4 2.2E+02 0.0048 25.8 5.5 58 13-72 2-64 (265)
354 PLN02623 pyruvate kinase 20.2 1.7E+02 0.0037 31.5 5.2 69 37-131 312-383 (581)
355 PF00389 2-Hacid_dh: D-isomer 20.2 4.7E+02 0.01 21.5 7.0 41 31-73 8-48 (133)
356 cd04736 MDH_FMN Mandelate dehy 20.1 5E+02 0.011 26.2 8.3 83 33-146 226-315 (361)
No 1
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=100.00 E-value=8.2e-51 Score=374.32 Aligned_cols=236 Identities=33% Similarity=0.531 Sum_probs=205.5
Q ss_pred CCcEEEEecCccc----CcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccC
Q 017539 9 ILPRVLIVSRRSV----RKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAET 84 (369)
Q Consensus 9 ~~P~IgIv~~~~~----~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~ 84 (369)
.+|+|||+++... +.+..+.+....|++++..+|+.|+++|...+.+.+...++.+|||+||||.|++|+.|++++
T Consensus 2 ~kpvIGIt~~~~~~~~~~~~~~~~~~~~~yv~ai~~aGg~pillP~~~d~~~~~~~l~~iDgliltGg~nV~P~~YGee~ 81 (243)
T COG2071 2 SKPVIGITADLIQEIVGFDGNPWSYLPYDYVDAIIKAGGIPILLPALEDPEDARQYLDLIDGLILTGGSNVDPSLYGEEP 81 (243)
T ss_pred CCCEEEEecchhccccccCCccHHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHhhccEEEecCCCcCCHHHcCCCC
Confidence 5799999987643 456668899999999999999999999976677888889999999999999999999999988
Q ss_pred CCCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCccee
Q 017539 85 SNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVV 164 (369)
Q Consensus 85 ~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~ 164 (369)
. +.+..++++||.+|+.+|+.|+++++||||||||+|+||+++||+++|++....+ .+.
T Consensus 82 ~--------------~~~~~~~p~RD~~E~aLi~~ALe~~iPILgICRG~QllNVa~GGtL~q~i~~~~~-------~~~ 140 (243)
T COG2071 82 S--------------EKDGPYDPERDAFELALIRAALERGIPILGICRGLQLLNVALGGTLYQDISEQPG-------HID 140 (243)
T ss_pred C--------------cccCCCCccccHHHHHHHHHHHHcCCCEEEEccchHHHHHHhcCeeehhhhcccc-------ccc
Confidence 5 4566789999999999999999999999999999999999999999998853222 345
Q ss_pred ecccCCCCCceeEEEEcCCCcchhhhhccccccceEEEEecccchhhcccCCCeEEEEEcCCCcEEEEEeCCCCCCCCCC
Q 017539 165 HIDYDNYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGK 244 (369)
Q Consensus 165 H~~~~~~~~~~~~V~i~~~s~L~~~~~~~~~~~~~~~~vns~H~~~V~~L~~g~~vlA~s~dg~Veaie~~~~~~~~~~~ 244 (369)
|....+.....|.|.+.++|.|+++++. .. +.|||+|+|++++|+++|++.|+++||+||||+.++ +.
T Consensus 141 H~~~~~~~~~~H~V~i~~~s~La~i~g~-----~~-~~VNS~HhQaIk~La~~L~V~A~a~DG~VEAie~~~------~~ 208 (243)
T COG2071 141 HRQPNPVHIESHEVHIEPGSKLAKILGE-----SE-FMVNSFHHQAIKKLAPGLVVEARAPDGTVEAVEVKN------DA 208 (243)
T ss_pred ccCCCCcccceeEEEecCCccHHHhcCc-----cc-eeecchHHHHHHHhCCCcEEEEECCCCcEEEEEecC------Cc
Confidence 6655554455899999999999999973 23 899999999999999999999999999999999985 48
Q ss_pred cEEEEcccCCccCCCCCCCCCCCCchHHHHHHHHHHHHH
Q 017539 245 FIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVIAY 283 (369)
Q Consensus 245 ~i~GvQFHPE~~~~~~~~~~~~~~~~~lf~~Fv~a~~~~ 283 (369)
|++|||||||+..... +.++.||+.|+++|+.+
T Consensus 209 fvlGVQWHPE~~~~~~------~~~~~LFe~F~~~~~~~ 241 (243)
T COG2071 209 FVLGVQWHPEYLVDTN------PLSLALFEAFVNACKKH 241 (243)
T ss_pred eEEEEecChhhhccCC------hHHHHHHHHHHHHHHhh
Confidence 9999999999998654 33689999999998865
No 2
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=100.00 E-value=8.2e-44 Score=337.84 Aligned_cols=237 Identities=27% Similarity=0.408 Sum_probs=187.5
Q ss_pred CCcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCC-ChhhhhhhcCCCCEEEECCCC-CCCCCCccccCCC
Q 017539 9 ILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS-GVHMLLDSFEPIHGVLLCEGE-DIDPSLYEAETSN 86 (369)
Q Consensus 9 ~~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~-~~~~l~~~l~~~DGlll~GG~-didp~~y~~~~~~ 86 (369)
.+|+|||+++.........+++...|++++.++|+.|+++|... +.+.+.+.++.+|||||+||+ |++|..|+++..
T Consensus 6 ~~P~Igi~~~~~~~~~~~~~~~~~~y~~~i~~aGg~pv~lp~~~~~~~~~~~~l~~~DGlil~GG~~dv~P~~yg~~~~- 84 (254)
T PRK11366 6 NNPVIGVVMCRNRLKGHATQTLQEKYLNAIIHAGGLPIALPHALAEPSLLEQLLPKLDGIYLPGSPSNVQPHLYGENGD- 84 (254)
T ss_pred CCCEEEEeCCCcccCcchHHHHHHHHHHHHHHCCCEEEEecCCCCCHHHHHHHHHhCCEEEeCCCCCCcCHhhcCCCCC-
Confidence 57999999865433333467899999999999999999999653 345566667789999999986 999999998653
Q ss_pred CChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeec
Q 017539 87 LSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHI 166 (369)
Q Consensus 87 ~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~ 166 (369)
....++.||.+++++++.++++++||||||+|||+||+++||++++++. +.. ....|.
T Consensus 85 ---------------~~~~~~~rD~~e~~li~~a~~~~~PILGICrG~Qllnva~GGtl~~~~~-~~~------~~~~h~ 142 (254)
T PRK11366 85 ---------------EPDADPGRDLLSMALINAALERRIPIFAICRGLQELVVATGGSLHRKLC-EQP------ELLEHR 142 (254)
T ss_pred ---------------CCCCChhHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHHhCCeEeeccc-ccc------cccccc
Confidence 1234788999999999999999999999999999999999999999852 111 001121
Q ss_pred cc-----CCCCCceeEEEEcCCCcchhhhhccccccceEEEEecccchhhcccCCCeEEEEEcCCCcEEEEEeCCCCCCC
Q 017539 167 DY-----DNYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPA 241 (369)
Q Consensus 167 ~~-----~~~~~~~~~V~i~~~s~L~~~~~~~~~~~~~~~~vns~H~~~V~~L~~g~~vlA~s~dg~Veaie~~~~~~~~ 241 (369)
.. ....+..|.|.+.+++.+..+++. ...+.||++|+|+|++||++++++|+++||.||||++++
T Consensus 143 ~~~~~~~~~~~~~~h~v~~~~~s~l~~i~~~-----~~~~~Vns~H~q~V~~l~~gl~v~A~s~dg~ieAie~~~----- 212 (254)
T PRK11366 143 EDPELPVEQQYAPSHEVQVEEGGLLSALLPE-----CSNFWVNSLHGQGAKVVSPRLRVEARSPDGLVEAVSVIN----- 212 (254)
T ss_pred cCCccccccccCCceEEEECCCCcHHHhcCC-----CceEEeehHHHHHHhhcccceEEEEEcCCCcEEEEEeCC-----
Confidence 10 001123689999999988888742 246889999999999999999999999999999999985
Q ss_pred CCCcEEEEcccCCccCCCCCCCCCCCCchHHHHHHHHHHHHHHH
Q 017539 242 EGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVIAYQK 285 (369)
Q Consensus 242 ~~~~i~GvQFHPE~~~~~~~~~~~~~~~~~lf~~Fv~a~~~~~~ 285 (369)
+++++|||||||+..+..+. ..++|++|+++|+++..
T Consensus 213 -~~~~~GVQwHPE~~~~~~~~------~~~lf~~fv~~~~~~~~ 249 (254)
T PRK11366 213 -HPFALGVQWHPEWNSSEYAL------SRILFEGFITACQHHIA 249 (254)
T ss_pred -CCCEEEEEeCCCcCCCCCch------HHHHHHHHHHHHHHHHH
Confidence 35679999999998865443 36899999999987654
No 3
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=100.00 E-value=2.1e-44 Score=334.56 Aligned_cols=210 Identities=39% Similarity=0.540 Sum_probs=158.9
Q ss_pred cEEEEecCccc-----CcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCC-CCCCCCccccC
Q 017539 11 PRVLIVSRRSV-----RKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGE-DIDPSLYEAET 84 (369)
Q Consensus 11 P~IgIv~~~~~-----~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~-didp~~y~~~~ 84 (369)
|+|||+++... ......+|+.+.|+++++++|+.|++||+..+.+.+...++.+||||||||. |++|..|++++
T Consensus 1 PvIGI~~~~~~~~~~~~~~~~~~~i~~~Yv~~i~~aG~~pv~ip~~~~~~~~~~~l~~idGlll~GG~~Di~P~~y~~~~ 80 (217)
T PF07722_consen 1 PVIGITAQPSESDSSDFPGYPRSYIAASYVKAIEAAGGRPVPIPYDADDEELDELLDRIDGLLLPGGGSDIDPALYGEEP 80 (217)
T ss_dssp -EEEEE-EE----SHHHHHC-SEEEEHHHHHHHHHTT-EEEEE-SS--HHHHHHHHHCSSEEEE---SS-T-GGGGT---
T ss_pred CEEEEeCCccccccCCcCchhHHHHhHHHHHHHHHcCCEEEEEccCCCHHHHHHHHhhcCEEEEcCCccchhHhhcCCcc
Confidence 89999998742 2234578999999999999999999999998888999999999999999999 99999999976
Q ss_pred CCCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCccee
Q 017539 85 SNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVV 164 (369)
Q Consensus 85 ~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~ 164 (369)
. +.....++.||.+++++++.++++++||||||||||+||+++||++++++....+ ...
T Consensus 81 ~--------------~~~~~~~~~rd~~e~~l~~~a~~~~~PilGICrG~Q~lnv~~GGtl~q~~~~~~~-------~~~ 139 (217)
T PF07722_consen 81 S--------------PESGYIDPERDIFELALIRNALGRGKPILGICRGMQLLNVAFGGTLYQDIPDQPG-------FPD 139 (217)
T ss_dssp B--------------TTSHHHHHHHHHHHHHHHHHHCCTT--EEEETHHHHHHHHHCCSSEESCCCCSS--------EEE
T ss_pred c--------------ccCCCcCHHHHHHHHHHHHHHHhcCCCEEEEcHHHHHHHHHhCCCceeecccCcC-------ccc
Confidence 4 2334567889999999999999999999999999999999999999998753222 111
Q ss_pred ecccCCCCCceeEEEEcCCCcchhhhhccccccceEEEEecccchhhcccCCCeEEEEEcCCCcEEEEEeCCCCCCCCCC
Q 017539 165 HIDYDNYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGK 244 (369)
Q Consensus 165 H~~~~~~~~~~~~V~i~~~s~L~~~~~~~~~~~~~~~~vns~H~~~V~~L~~g~~vlA~s~dg~Veaie~~~~~~~~~~~ 244 (369)
|..-. .....|.|.+.+++.|.++++. ..+.|||+|||+|++|+++|+++|+++||.||||+..+ ++
T Consensus 140 ~~~~~-~~~~~h~v~i~~~s~l~~~~~~------~~~~vns~Hhq~v~~l~~~l~v~A~s~Dg~iEaie~~~------~~ 206 (217)
T PF07722_consen 140 HRQHP-QDFPSHPVRIVPGSLLAKILGS------EEIEVNSFHHQAVKPLGEGLRVTARSPDGVIEAIESPE------HK 206 (217)
T ss_dssp CEE-S--TS--EEEEEETTSTCCCTSHH------CTEEEEEEECEEECCHHCCEEEEEEECTSSEEEEEECC------ES
T ss_pred ccccc-cccccccceeccCchHHHHhCc------CcceeecchhhhhhccCCCceEEEEecCCcEEEEEEcC------CC
Confidence 21111 1345899999999999999862 46899999999999999999999999999999999986 34
Q ss_pred -cEEEEcccCC
Q 017539 245 -FIMGLQFHPE 254 (369)
Q Consensus 245 -~i~GvQFHPE 254 (369)
|++|+|||||
T Consensus 207 ~~~~GvQwHPE 217 (217)
T PF07722_consen 207 YPILGVQWHPE 217 (217)
T ss_dssp S-EEEESS-CC
T ss_pred CCEEEEEeCCC
Confidence 8999999999
No 4
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=100.00 E-value=4.7e-33 Score=253.15 Aligned_cols=185 Identities=43% Similarity=0.709 Sum_probs=154.1
Q ss_pred EEEecCcccCcC--cccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChh
Q 017539 13 VLIVSRRSVRKN--KFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPE 90 (369)
Q Consensus 13 IgIv~~~~~~~~--~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~ 90 (369)
|||++++....+ +..+++...++++++.+|+.++++|+..+.+.+...++.+||||||||++..|..|+++..
T Consensus 1 ~gi~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~iv~~~~~~~~~~~~l~~~dglvl~GG~~~~~~~~~~~~~----- 75 (189)
T cd01745 1 IGITARLREEEGGYERRDYLNQYYVDAVRKAGGLPVLLPPVDDEEDLEQYLELLDGLLLTGGGDVDPPLYGEEPH----- 75 (189)
T ss_pred CEEcCccccccCccHHHHHHHHHHHHHHHHCCCEEEEeCCCCChHHHHHHHhhCCEEEECCCCCCChhhcCCCCC-----
Confidence 688888654433 3489999999999999999999999887666666667789999999999888888876543
Q ss_pred HHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeecccCC
Q 017539 91 ELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDN 170 (369)
Q Consensus 91 ~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~ 170 (369)
+.....++.++..+..+++.+.+.++|+||||+|||+|+.++||++.++
T Consensus 76 ---------~~~~~~~~~r~~~~~~~~~~~~~~~~PilgiC~G~Q~l~~~~Gg~v~~~---------------------- 124 (189)
T cd01745 76 ---------PELGPIDPERDAFELALLRAALERGKPILGICRGMQLLNVALGGTLYQD---------------------- 124 (189)
T ss_pred ---------cccCCCChhHHHHHHHHHHHHHHCCCCEEEEcchHHHHHHHhCCeEEcC----------------------
Confidence 2233456778888899999999999999999999999999999997642
Q ss_pred CCCceeEEEEcCCCcchhhhhccccccceEEEEecccchhhcccCCCeEEEEEcCCCcEEEEEeCCCCCCCCCCcEEEEc
Q 017539 171 YDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQ 250 (369)
Q Consensus 171 ~~~~~~~V~i~~~s~L~~~~~~~~~~~~~~~~vns~H~~~V~~L~~g~~vlA~s~dg~Veaie~~~~~~~~~~~~i~GvQ 250 (369)
. .++++|++.|.++|++++++|+++||.|+|+++++ +.+++|+|
T Consensus 125 ----~--------------------------~v~~~H~~~v~~~~~~~~vla~~~d~~vea~~~~~------~~~~~gvQ 168 (189)
T cd01745 125 ----I--------------------------RVNSLHHQAIKRLADGLRVEARAPDGVIEAIESPD------RPFVLGVQ 168 (189)
T ss_pred ----C--------------------------ceechHHHHHhhcCCCCEEEEECCCCcEEEEEeCC------CCeEEEEe
Confidence 0 36789999999999999999999999999999984 36899999
Q ss_pred ccCCccCC--CCCCCCCCCCchHHHHHHH
Q 017539 251 FHPERMRR--PDSDEFDYPGCPSAYQEFV 277 (369)
Q Consensus 251 FHPE~~~~--~~~~~~~~~~~~~lf~~Fv 277 (369)
||||+..+ +. ..++|++|+
T Consensus 169 fHPE~~~~~~~~--------~~~if~~f~ 189 (189)
T cd01745 169 WHPEWLADTDPD--------SLKLFEAFV 189 (189)
T ss_pred cCCCcCcccCch--------HhHHHHHhC
Confidence 99999886 32 368999984
No 5
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=99.98 E-value=1.6e-31 Score=242.87 Aligned_cols=182 Identities=18% Similarity=0.269 Sum_probs=138.0
Q ss_pred EEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCC-ChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhH
Q 017539 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS-GVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEE 91 (369)
Q Consensus 13 IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~-~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~ 91 (369)
|+|++++++++++. ++++.+.|+.+.+++++. +.+++... ++|||||+|||. +|..
T Consensus 2 il~idn~Dsft~nl--------~~~l~~~g~~v~v~~~~~~~~~~~~~~--~~d~iils~GPg-~p~~------------ 58 (187)
T PRK08007 2 ILLIDNYDSFTWNL--------YQYFCELGADVLVKRNDALTLADIDAL--KPQKIVISPGPC-TPDE------------ 58 (187)
T ss_pred EEEEECCCccHHHH--------HHHHHHCCCcEEEEeCCCCCHHHHHhc--CCCEEEEcCCCC-ChHH------------
Confidence 88999998876664 455777899999999874 44554432 689999999985 3421
Q ss_pred HHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeecccCCC
Q 017539 92 LEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNY 171 (369)
Q Consensus 92 ~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~ 171 (369)
+..+..+++. ++.++|+||||+|||+|+.++||++.+....+.
T Consensus 59 ------------------~~~~~~~~~~-~~~~~PiLGIClG~Q~la~a~Gg~v~~~~~~~~------------------ 101 (187)
T PRK08007 59 ------------------AGISLDVIRH-YAGRLPILGVCLGHQAMAQAFGGKVVRAAKVMH------------------ 101 (187)
T ss_pred ------------------CCccHHHHHH-hcCCCCEEEECHHHHHHHHHcCCEEEeCCCccc------------------
Confidence 1112355665 467899999999999999999999998653222
Q ss_pred CCceeEEEEcCCCcchhhhhccccccceEEEEecccchhhc--ccCCCeEEEEEcCCCcEEEEEeCCCCCCCCCCcEEEE
Q 017539 172 DGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVK--RLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGL 249 (369)
Q Consensus 172 ~~~~~~V~i~~~s~L~~~~~~~~~~~~~~~~vns~H~~~V~--~L~~g~~vlA~s~dg~Veaie~~~~~~~~~~~~i~Gv 249 (369)
|..+++.... +.+++.++ ..+.+++||++.|+ ++|++++++|+++||.|+|+++++ .+++|+
T Consensus 102 -g~~~~v~~~~-~~l~~~~~-------~~~~v~~~H~~~v~~~~lp~~~~v~a~~~~~~i~a~~~~~-------~~i~Gv 165 (187)
T PRK08007 102 -GKTSPITHNG-EGVFRGLA-------NPLTVTRYHSLVVEPDSLPACFEVTAWSETREIMGIRHRQ-------WDLEGV 165 (187)
T ss_pred -CCceEEEECC-CCcccCCC-------CCcEEEEcchhEEccCCCCCCeEEEEEeCCCcEEEEEeCC-------CCEEEE
Confidence 2245666543 33554443 35789999999995 799999999999999999999985 789999
Q ss_pred cccCCccCCCCCCCCCCCCchHHHHHHHH
Q 017539 250 QFHPERMRRPDSDEFDYPGCPSAYQEFVK 278 (369)
Q Consensus 250 QFHPE~~~~~~~~~~~~~~~~~lf~~Fv~ 278 (369)
|||||+..+..+ ..+|++|++
T Consensus 166 QfHPE~~~t~~G--------~~il~nFl~ 186 (187)
T PRK08007 166 QFHPESILSEQG--------HQLLANFLH 186 (187)
T ss_pred EeCCcccCCcch--------HHHHHHHhh
Confidence 999999877654 589999985
No 6
>PRK06186 hypothetical protein; Validated
Probab=99.97 E-value=4.5e-31 Score=245.21 Aligned_cols=174 Identities=17% Similarity=0.251 Sum_probs=132.3
Q ss_pred hcCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHH
Q 017539 60 SFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNV 139 (369)
Q Consensus 60 ~l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~ 139 (369)
.|+.+|||++|||.+. ... ...+.++++|+++++|+||||+|||++.+
T Consensus 50 ~l~~~dgilvpgGfg~-------rg~-------------------------~Gki~ai~~Are~~iP~LGIClGmQ~avI 97 (229)
T PRK06186 50 DLAGFDGIWCVPGSPY-------RND-------------------------DGALTAIRFARENGIPFLGTCGGFQHALL 97 (229)
T ss_pred hHhhCCeeEeCCCCCc-------ccH-------------------------hHHHHHHHHHHHcCCCeEeechhhHHHHH
Confidence 5778999999999431 000 12358899999999999999999999888
Q ss_pred HhCCee--eeccc-hhhhccCCCCcceeecccCCCCCceeEEEEcCCCcchhhhhcccccc--ceEEEEecccchhhccc
Q 017539 140 ACGGTL--YQDIE-KEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKDTPLHDWFKDSLEEE--KMEIWVNSYHHQGVKRL 214 (369)
Q Consensus 140 a~GG~l--~~~~~-~e~g~~~~~~~~v~H~~~~~~~~~~~~V~i~~~s~L~~~~~~~~~~~--~~~~~vns~H~~~V~~L 214 (369)
.++.++ +++.. .|+.+. ...++............|+|.+.++|.+.++|+.+.+.+ +++|.||+.|+|+++
T Consensus 98 e~arnv~g~~dA~s~E~~~~--~~~pvi~~~~~~~~~~~h~v~l~~~S~l~~iyg~~~i~erhrHryeVNs~h~q~i~-- 173 (229)
T PRK06186 98 EYARNVLGWADAAHAETDPE--GDRPVIAPLSCSLVEKTGDIRLRPGSLIARAYGTLEIEEGYHCRYGVNPEFVAALE-- 173 (229)
T ss_pred HHHhhhcCCcCCCcCCCCCC--CCCCEEEECccccccCceEEEECCCCHHHHHhCCCeeeeeccccEEECHHHHHHHh--
Confidence 877664 56653 444321 122333322222223458999999999999998654333 467899999999997
Q ss_pred CCCeEEEEEcCCCcEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCCchHHHHHHHHHHHH
Q 017539 215 AQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVIA 282 (369)
Q Consensus 215 ~~g~~vlA~s~dg~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~~~~~~~~lf~~Fv~a~~~ 282 (369)
++|++++|+++||.||++|.++ ++|++|||||||+.+.+..+ .++|+.|+++|.+
T Consensus 174 ~~GL~vsa~s~DG~iEaiE~~~------hpf~lGVQwHPE~~s~~~~~-------~~LF~~Fv~aa~~ 228 (229)
T PRK06186 174 SGDLRVTGWDEDGDVRAVELPG------HPFFVATLFQPERAALAGRP-------PPLVRAFLRAARA 228 (229)
T ss_pred cCCeEEEEEcCCCCEEEEEeCC------CCcEEEEeCCCCccCCCCCC-------CHHHHHHHHHHhc
Confidence 7999999999999999999986 58999999999998875443 4899999998863
No 7
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=99.97 E-value=3.7e-30 Score=233.98 Aligned_cols=182 Identities=19% Similarity=0.271 Sum_probs=137.1
Q ss_pred EEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCC-CChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhH
Q 017539 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRV-SGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEE 91 (369)
Q Consensus 13 IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~-~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~ 91 (369)
|+|+++.++++++ +++++.+.|+.++++|.+ .+.+.+.+. .+|||||+|||+ +|..
T Consensus 2 il~id~~dsft~~--------~~~~l~~~g~~v~v~~~~~~~~~~~~~~--~~d~iilsgGpg-~p~~------------ 58 (188)
T TIGR00566 2 VLMIDNYDSFTYN--------LVQYFCELGAEVVVKRNDSLTLQEIEAL--LPLLIVISPGPC-TPNE------------ 58 (188)
T ss_pred EEEEECCcCHHHH--------HHHHHHHcCCceEEEECCCCCHHHHHhc--CCCEEEEcCCCC-Chhh------------
Confidence 7888888776544 566788889999999965 345565443 589999999984 3311
Q ss_pred HHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeecccCCC
Q 017539 92 LEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNY 171 (369)
Q Consensus 92 ~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~ 171 (369)
+..+..+++++ ..++|+||||+|||+|+.++||++.+.... .|
T Consensus 59 ------------------~~~~~~~i~~~-~~~~PvLGIC~G~Qll~~~~GG~v~~~~~~------------~~------ 101 (188)
T TIGR00566 59 ------------------AGISLEAIRHF-AGKLPILGVCLGHQAMGQAFGGDVVRANTV------------MH------ 101 (188)
T ss_pred ------------------cchhHHHHHHh-ccCCCEEEECHHHHHHHHHcCCEEeeCCCc------------cc------
Confidence 11235677777 678999999999999999999999875321 12
Q ss_pred CCceeEEEEcCCCcchhhhhccccccceEEEEecccchhh--cccCCCeEEEEEcCCC-cEEEEEeCCCCCCCCCCcEEE
Q 017539 172 DGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGV--KRLAQRFVPMAFAPDG-LIEGFYDPDAYNPAEGKFIMG 248 (369)
Q Consensus 172 ~~~~~~V~i~~~s~L~~~~~~~~~~~~~~~~vns~H~~~V--~~L~~g~~vlA~s~dg-~Veaie~~~~~~~~~~~~i~G 248 (369)
+.+++|+....+ ++..+. ..+.++++|++.| ..+|++++++|++.++ .++|+++++ .++||
T Consensus 102 -g~~~~v~~~~~~-~~~~l~-------~~~~v~~~H~~~v~~~~l~~~~~v~a~s~~~~~v~a~~~~~-------~~i~g 165 (188)
T TIGR00566 102 -GKTSEIEHNGAG-IFRGLF-------NPLTATRYHSLVVEPETLPTCFPVTAWEEENIEIMAIRHRD-------LPLEG 165 (188)
T ss_pred -cceEEEEECCCc-cccCCC-------CCcEEEEcccceEecccCCCceEEEEEcCCCCEEEEEEeCC-------CCEEE
Confidence 235677765443 333332 2478899999998 4799999999999874 999999986 68999
Q ss_pred EcccCCccCCCCCCCCCCCCchHHHHHHHH
Q 017539 249 LQFHPERMRRPDSDEFDYPGCPSAYQEFVK 278 (369)
Q Consensus 249 vQFHPE~~~~~~~~~~~~~~~~~lf~~Fv~ 278 (369)
+|||||+..++.+ ..+|++|++
T Consensus 166 vQfHPE~~~t~~G--------~~il~nfl~ 187 (188)
T TIGR00566 166 VQFHPESILSEQG--------HQLLANFLH 187 (188)
T ss_pred EEeCCCccCCccc--------HHHHHHHHh
Confidence 9999999877655 589999985
No 8
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=99.97 E-value=3.9e-30 Score=233.39 Aligned_cols=170 Identities=23% Similarity=0.359 Sum_probs=134.5
Q ss_pred HHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhHHH
Q 017539 34 HLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIE 113 (369)
Q Consensus 34 ~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e 113 (369)
..+++++.|+.+.++|++.+.+++... .+|||||+||+. +.|+...
T Consensus 14 l~~~l~~~g~~~~~~~~~~~~~~~~~~--~~~glii~Gg~~---~~~~~~~----------------------------- 59 (188)
T TIGR00888 14 IARRLRELGVYSELVPNTTPLEEIREK--NPKGIILSGGPS---SVYAENA----------------------------- 59 (188)
T ss_pred HHHHHHHcCCEEEEEeCCCCHHHHhhc--CCCEEEECCCCC---CcCcCCc-----------------------------
Confidence 457889999999999998776666542 367999999963 2232211
Q ss_pred HHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeecccCCCCCceeEEEEcCCCcchhhhhcc
Q 017539 114 LRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKDTPLHDWFKDS 193 (369)
Q Consensus 114 ~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~~~~~~V~i~~~s~L~~~~~~~ 193 (369)
..+++.+++.++|+||||+|||+|+.++||++.+....++ ++.++.+.+.++++..++
T Consensus 60 ~~~i~~~~~~~~PilGIC~G~Qll~~~lgg~v~~~~~~~~--------------------g~~~v~~~~~~~l~~~~~-- 117 (188)
T TIGR00888 60 PRADEKIFELGVPVLGICYGMQLMAKQLGGEVGRAEKREY--------------------GKAELEILDEDDLFRGLP-- 117 (188)
T ss_pred hHHHHHHHhCCCCEEEECHHHHHHHHhcCceEecCCCccc--------------------eeEEEEEecCCHhhcCCC--
Confidence 2466788889999999999999999999999886532222 256787777777777664
Q ss_pred ccccceEEEEecccchhhcccCCCeEEEEEcCCCcEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCCchHHH
Q 017539 194 LEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAY 273 (369)
Q Consensus 194 ~~~~~~~~~vns~H~~~V~~L~~g~~vlA~s~dg~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~~~~~~~~lf 273 (369)
..+.++.+|++++..+|++++++|+++++.++|+++++ .+++|+|||||++.++.+ .++|
T Consensus 118 -----~~~~~~~~H~~~v~~l~~~~~vla~~~~~~v~a~~~~~-------~~~~g~QfHPE~~~~~~g--------~~i~ 177 (188)
T TIGR00888 118 -----DESTVWMSHGDKVKELPEGFKVLATSDNCPVAAMAHEE-------KPIYGVQFHPEVTHTEYG--------NELL 177 (188)
T ss_pred -----CCcEEEeEccceeecCCCCCEEEEECCCCCeEEEEECC-------CCEEEEeeCCccCCChhh--------HHHH
Confidence 25677889999999999999999999999999999985 689999999999876443 5899
Q ss_pred HHHHHH
Q 017539 274 QEFVKA 279 (369)
Q Consensus 274 ~~Fv~a 279 (369)
++|+.+
T Consensus 178 ~~f~~~ 183 (188)
T TIGR00888 178 ENFVYD 183 (188)
T ss_pred HHHHHH
Confidence 999983
No 9
>PRK05670 anthranilate synthase component II; Provisional
Probab=99.97 E-value=5.8e-30 Score=232.65 Aligned_cols=184 Identities=22% Similarity=0.339 Sum_probs=136.0
Q ss_pred EEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCC-ChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhH
Q 017539 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS-GVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEE 91 (369)
Q Consensus 13 IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~-~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~ 91 (369)
|+|++..+++++ ..++++.++|..+.++|+.. +.+.+. .+ .+|||||+||+. +| ++. .
T Consensus 2 iliid~~d~f~~--------~i~~~l~~~g~~~~v~~~~~~~~~~~~-~~-~~dglIlsgGpg-~~--~d~-~------- 60 (189)
T PRK05670 2 ILLIDNYDSFTY--------NLVQYLGELGAEVVVYRNDEITLEEIE-AL-NPDAIVLSPGPG-TP--AEA-G------- 60 (189)
T ss_pred EEEEECCCchHH--------HHHHHHHHCCCcEEEEECCCCCHHHHH-hC-CCCEEEEcCCCC-Ch--HHc-c-------
Confidence 788888865433 36788999999999999864 444443 33 389999999973 22 110 0
Q ss_pred HHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeecccCCC
Q 017539 92 LEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNY 171 (369)
Q Consensus 92 ~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~ 171 (369)
....+++. ++.++|+||||+|||+|+.++||++.+....+.
T Consensus 61 --------------------~~~~~l~~-~~~~~PvLGIClG~Qlla~alGg~v~~~~~~~~------------------ 101 (189)
T PRK05670 61 --------------------ISLELIRE-FAGKVPILGVCLGHQAIGEAFGGKVVRAKEIMH------------------ 101 (189)
T ss_pred --------------------hHHHHHHH-hcCCCCEEEECHHHHHHHHHhCCEEEecCCccc------------------
Confidence 11245554 456899999999999999999999987532111
Q ss_pred CCceeEEEEcCCCcchhhhhccccccceEEEEecccchhhc--ccCCCeEEEEEcCCCcEEEEEeCCCCCCCCCCcEEEE
Q 017539 172 DGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVK--RLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGL 249 (369)
Q Consensus 172 ~~~~~~V~i~~~s~L~~~~~~~~~~~~~~~~vns~H~~~V~--~L~~g~~vlA~s~dg~Veaie~~~~~~~~~~~~i~Gv 249 (369)
+..++++ ..++++++.++ ..+.++++|++.|. ++|++++++|++++|.++|+++++ .++||+
T Consensus 102 -g~~~~v~-~~~~~l~~~~~-------~~~~v~~~H~~~v~~~~lp~~~~~la~s~~~~i~a~~~~~-------~~~~gv 165 (189)
T PRK05670 102 -GKTSPIE-HDGSGIFAGLP-------NPFTVTRYHSLVVDRESLPDCLEVTAWTDDGEIMGVRHKE-------LPIYGV 165 (189)
T ss_pred -CceeEEE-eCCCchhccCC-------CCcEEEcchhheeccccCCCceEEEEEeCCCcEEEEEECC-------CCEEEE
Confidence 2235555 34566666553 25778999999995 499999999999999999999975 679999
Q ss_pred cccCCccCCCCCCCCCCCCchHHHHHHHHHH
Q 017539 250 QFHPERMRRPDSDEFDYPGCPSAYQEFVKAV 280 (369)
Q Consensus 250 QFHPE~~~~~~~~~~~~~~~~~lf~~Fv~a~ 280 (369)
|||||+..++. ..++|++|++.+
T Consensus 166 QfHPE~~~~~~--------g~~i~~~F~~~~ 188 (189)
T PRK05670 166 QFHPESILTEH--------GHKLLENFLELA 188 (189)
T ss_pred eeCCCcCCCcc--------hHHHHHHHHHhh
Confidence 99999976543 369999999875
No 10
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=99.97 E-value=1.4e-29 Score=234.83 Aligned_cols=189 Identities=20% Similarity=0.265 Sum_probs=141.6
Q ss_pred EEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCC-hhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChh
Q 017539 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSG-VHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPE 90 (369)
Q Consensus 12 ~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~-~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~ 90 (369)
+|+|+...+. ....+.+++.+.|+.+++++.+.+ .....+.++.+|||||+||+. +|
T Consensus 2 ~ilv~d~~~~--------~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~-~~------------- 59 (214)
T PRK07765 2 RILVVDNYDS--------FVFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPG-TP------------- 59 (214)
T ss_pred eEEEEECCCc--------HHHHHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCC-Ch-------------
Confidence 5677766532 233578889999999999998753 233344456799999999973 22
Q ss_pred HHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeecccCC
Q 017539 91 ELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDN 170 (369)
Q Consensus 91 ~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~ 170 (369)
.++..+..++++++++++|+||||+|||+|+.++||++.+....+.|
T Consensus 60 -----------------~~~~~~~~~i~~~~~~~~PiLGIC~G~Qlla~a~GG~v~~~~~~~~g---------------- 106 (214)
T PRK07765 60 -----------------ERAGASIDMVRACAAAGTPLLGVCLGHQAIGVAFGATVDRAPELLHG---------------- 106 (214)
T ss_pred -----------------hhcchHHHHHHHHHhCCCCEEEEccCHHHHHHHhCCEEeeCCCCccC----------------
Confidence 11234568999999999999999999999999999999875432222
Q ss_pred CCCceeEEEEcCCCcchhhhhccccccceEEEEecccchhhc--ccCCCeEEEEEcCCCcEEEEEeCCCCCCCCCCcEEE
Q 017539 171 YDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVK--RLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMG 248 (369)
Q Consensus 171 ~~~~~~~V~i~~~s~L~~~~~~~~~~~~~~~~vns~H~~~V~--~L~~g~~vlA~s~dg~Veaie~~~~~~~~~~~~i~G 248 (369)
..+.+.+..++ ++..++ ..+.++++|++.|. ++|+++.++|++++|.++|+++++ .+++|
T Consensus 107 ---~~~~v~~~~~~-~~~~~~-------~~~~v~~~H~~~v~~~~lp~~~~vla~s~~~~vqa~~~~~-------~~i~g 168 (214)
T PRK07765 107 ---KTSSVHHTGVG-VLAGLP-------DPFTATRYHSLTILPETLPAELEVTARTDSGVIMAVRHRE-------LPIHG 168 (214)
T ss_pred ---ceeEEEECCCc-cccCCC-------CccEEEecchheEecccCCCceEEEEEcCCCcEEEEEeCC-------CCEEE
Confidence 23556665444 333222 35788899999995 799999999999999999999985 57999
Q ss_pred EcccCCccCCCCCCCCCCCCchHHHHHHHHHHH
Q 017539 249 LQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVI 281 (369)
Q Consensus 249 vQFHPE~~~~~~~~~~~~~~~~~lf~~Fv~a~~ 281 (369)
+|||||+..+..+ ..++.+|++.|.
T Consensus 169 vQfHPE~~~t~~g--------~~~l~~f~~~~~ 193 (214)
T PRK07765 169 VQFHPESVLTEGG--------HRMLANWLTVCG 193 (214)
T ss_pred EeeCCCcccCcch--------HHHHHHHHHHhc
Confidence 9999998765444 478999998763
No 11
>PRK00758 GMP synthase subunit A; Validated
Probab=99.97 E-value=9.6e-30 Score=230.07 Aligned_cols=181 Identities=24% Similarity=0.337 Sum_probs=133.9
Q ss_pred EEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCC-CEEEECCCCCCCCCCccccCCCCChhH
Q 017539 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPI-HGVLLCEGEDIDPSLYEAETSNLSPEE 91 (369)
Q Consensus 13 IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~-DGlll~GG~didp~~y~~~~~~~~~~~ 91 (369)
|+|+.....+ .....+++++.|+.+.++++..+++++. .+ ||||||||++++. +.
T Consensus 2 i~iid~~~~~--------~~~i~~~l~~~g~~~~~~~~~~~~~~l~----~~~dgivi~Gg~~~~~--~~---------- 57 (184)
T PRK00758 2 IVVVDNGGQY--------NHLIHRTLRYLGVDAKIIPNTTPVEEIK----AFEDGLILSGGPDIER--AG---------- 57 (184)
T ss_pred EEEEECCCch--------HHHHHHHHHHcCCcEEEEECCCCHHHHh----hcCCEEEECCCCChhh--cc----------
Confidence 6677655432 1224677888999999999776655543 46 9999999974210 00
Q ss_pred HHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeecccCCC
Q 017539 92 LEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNY 171 (369)
Q Consensus 92 ~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~ 171 (369)
+ ..+.++ +.++|+||||+|||+|+.++||++.+....++
T Consensus 58 ------------------~--~~~~l~---~~~~PilGIC~G~Q~L~~a~Gg~v~~~~~~~~------------------ 96 (184)
T PRK00758 58 ------------------N--CPEYLK---ELDVPILGICLGHQLIAKAFGGEVGRGEYGEY------------------ 96 (184)
T ss_pred ------------------c--cHHHHH---hCCCCEEEEeHHHHHHHHhcCcEEecCCCcee------------------
Confidence 0 012222 56899999999999999999999886532222
Q ss_pred CCceeEEEEcCCCcchhhhhccccccceEEEEecccchhhcccCCCeEEEEEcCCCcEEEEEeCCCCCCCCCCcEEEEcc
Q 017539 172 DGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQF 251 (369)
Q Consensus 172 ~~~~~~V~i~~~s~L~~~~~~~~~~~~~~~~vns~H~~~V~~L~~g~~vlA~s~dg~Veaie~~~~~~~~~~~~i~GvQF 251 (369)
+++.+.+.+.+.++..++ ..+.++++|++.|.++|++++++|++++|.|+|+++++ .+++|+||
T Consensus 97 --g~~~i~~~~~~~l~~~~~-------~~~~~~~~H~~~v~~l~~~~~~la~~~~~~v~a~~~~~-------~~~~g~Qf 160 (184)
T PRK00758 97 --ALVEVEILDEDDILKGLP-------PEIRVWASHADEVKELPDGFEILARSDICEVEAMKHKE-------KPIYGVQF 160 (184)
T ss_pred --eeEEEEEcCCChhhhCCC-------CCcEEEeehhhhhhhCCCCCEEEEECCCCCEEEEEECC-------CCEEEEEc
Confidence 246677766666665553 35778899999999999999999999999999999975 67999999
Q ss_pred cCCccCCCCCCCCCCCCchHHHHHHHHHHHH
Q 017539 252 HPERMRRPDSDEFDYPGCPSAYQEFVKAVIA 282 (369)
Q Consensus 252 HPE~~~~~~~~~~~~~~~~~lf~~Fv~a~~~ 282 (369)
|||++.++.+ .++|++|++.|..
T Consensus 161 HPE~~~~~~g--------~~l~~~f~~~~~~ 183 (184)
T PRK00758 161 HPEVAHTEYG--------EEIFKNFLEICGK 183 (184)
T ss_pred CCccCCCchH--------HHHHHHHHHHHcc
Confidence 9999876443 5899999987654
No 12
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=99.97 E-value=8e-30 Score=232.11 Aligned_cols=182 Identities=19% Similarity=0.287 Sum_probs=132.0
Q ss_pred EEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCC-CChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhH
Q 017539 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRV-SGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEE 91 (369)
Q Consensus 13 IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~-~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~ 91 (369)
|+++.+.++++++.+ +.|++.|+.+.+++++ .+.+++... .+|||||+|||. +| ++.
T Consensus 2 il~id~~dsf~~nl~--------~~l~~~~~~~~v~~~~~~~~~~~~~~--~~~~iilsgGP~-~~--~~~--------- 59 (191)
T PRK06774 2 LLLIDNYDSFTYNLY--------QYFCELGTEVMVKRNDELQLTDIEQL--APSHLVISPGPC-TP--NEA--------- 59 (191)
T ss_pred EEEEECCCchHHHHH--------HHHHHCCCcEEEEeCCCCCHHHHHhc--CCCeEEEcCCCC-Ch--HhC---------
Confidence 788899887766544 4466789999999976 355555443 689999999984 33 111
Q ss_pred HHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeecccCCC
Q 017539 92 LEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNY 171 (369)
Q Consensus 92 ~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~ 171 (369)
.....+++. .++++|+||||+|||+|+.++||++.+....+.|
T Consensus 60 -------------------~~~~~~i~~-~~~~~PiLGIC~G~Qlla~~~GG~v~~~~~~~~G----------------- 102 (191)
T PRK06774 60 -------------------GISLAVIRH-FADKLPILGVCLGHQALGQAFGARVVRARQVMHG----------------- 102 (191)
T ss_pred -------------------CCchHHHHH-hcCCCCEEEECHHHHHHHHHhCCEEEeCCcceec-----------------
Confidence 012345554 4678999999999999999999999876432222
Q ss_pred CCceeEEEEcCCCcchhhhhccccccceEEEEecccchhh--cccCCCeEEEEEcC-CC---cEEEEEeCCCCCCCCCCc
Q 017539 172 DGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGV--KRLAQRFVPMAFAP-DG---LIEGFYDPDAYNPAEGKF 245 (369)
Q Consensus 172 ~~~~~~V~i~~~s~L~~~~~~~~~~~~~~~~vns~H~~~V--~~L~~g~~vlA~s~-dg---~Veaie~~~~~~~~~~~~ 245 (369)
+..+.....+++++.++ ..+.+++||++.| .++|+++.++|+++ ++ .++++++++ .|
T Consensus 103 ---~~~~~~~~~~~lf~~l~-------~~~~v~~~Hs~~v~~~~lp~~~~vlA~s~~d~~~~~i~~~~~~~-------~~ 165 (191)
T PRK06774 103 ---KTSAICHSGQGVFRGLN-------QPLTVTRYHSLVIAADSLPGCFELTAWSERGGEMDEIMGIRHRT-------LP 165 (191)
T ss_pred ---ceEEEEecCchhhcCCC-------CCcEEEEeCcceeeccCCCCCeEEEEEeCCCCCcceEEEEEeCC-------CC
Confidence 23343334555665553 3568899999998 47899999999987 43 466777774 68
Q ss_pred EEEEcccCCccCCCCCCCCCCCCchHHHHHHHH
Q 017539 246 IMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVK 278 (369)
Q Consensus 246 i~GvQFHPE~~~~~~~~~~~~~~~~~lf~~Fv~ 278 (369)
+||+|||||+.+++.+ .++|++|++
T Consensus 166 i~GvQfHPE~~~~~~G--------~~i~~nf~~ 190 (191)
T PRK06774 166 LEGVQFHPESILSEQG--------HQLLDNFLK 190 (191)
T ss_pred EEEEEECCCcCCCccH--------HHHHHHHhh
Confidence 9999999999776544 589999985
No 13
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.97 E-value=2.8e-29 Score=225.79 Aligned_cols=169 Identities=24% Similarity=0.390 Sum_probs=129.9
Q ss_pred HHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhHH
Q 017539 33 YHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSI 112 (369)
Q Consensus 33 ~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~ 112 (369)
.+.+++++.|+.++++|+..+.+ ...++.+||||||||+. +.|++..
T Consensus 13 ~~~~~l~~~G~~~~~~~~~~~~~--~~~~~~~dgvIl~Gg~~---~~~~~~~---------------------------- 59 (181)
T cd01742 13 LIARRVRELGVYSEILPNTTPLE--EIKLKNPKGIILSGGPS---SVYEEDA---------------------------- 59 (181)
T ss_pred HHHHHHHhcCceEEEecCCCChh--hhcccCCCEEEECCCcc---ccccccc----------------------------
Confidence 36788999999999999876544 22456899999999963 2232211
Q ss_pred HHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeecccCCCCCceeEEEEcCCCcchhhhhc
Q 017539 113 ELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKDTPLHDWFKD 192 (369)
Q Consensus 113 e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~~~~~~V~i~~~s~L~~~~~~ 192 (369)
..+.+..++.++|+||||+|||+|+.++||++.+....+. +++.+.+.+++++++.++
T Consensus 60 -~~~~~~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~--------------------G~~~v~~~~~~~l~~~~~- 117 (181)
T cd01742 60 -PRVDPEIFELGVPVLGICYGMQLIAKALGGKVERGDKREY--------------------GKAEIEIDDSSPLFEGLP- 117 (181)
T ss_pred -chhhHHHHhcCCCEEEEcHHHHHHHHhcCCeEEeCCCCcc--------------------eEEEEEecCCChhhcCCC-
Confidence 0123445567999999999999999999999887542222 256666666777777664
Q ss_pred cccccceEEEEecccchhhcccCCCeEEEEEcCCCcEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCCchHH
Q 017539 193 SLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSA 272 (369)
Q Consensus 193 ~~~~~~~~~~vns~H~~~V~~L~~g~~vlA~s~dg~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~~~~~~~~l 272 (369)
..+.++.+|++.|.++|++++++|+++++.|+|+++++ .++||+|||||++.++.+ .++
T Consensus 118 ------~~~~~~~~H~~~v~~l~~~~~~la~~~~~~i~a~~~~~-------~~~~g~QfHPE~~~~~~g--------~~l 176 (181)
T cd01742 118 ------DEQTVWMSHGDEVVKLPEGFKVIASSDNCPVAAIANEE-------KKIYGVQFHPEVTHTEKG--------KEI 176 (181)
T ss_pred ------CceEEEcchhhhhhhcCCCcEEEEeCCCCCEEEEEeCC-------CcEEEEEcCCccccCcCh--------HHH
Confidence 25778899999999999999999999999999999974 689999999999976544 589
Q ss_pred HHHHH
Q 017539 273 YQEFV 277 (369)
Q Consensus 273 f~~Fv 277 (369)
|++|+
T Consensus 177 l~~f~ 181 (181)
T cd01742 177 LKNFL 181 (181)
T ss_pred HHhhC
Confidence 99884
No 14
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=99.96 E-value=3.6e-29 Score=228.84 Aligned_cols=185 Identities=17% Similarity=0.277 Sum_probs=136.9
Q ss_pred EEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCC-ChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhH
Q 017539 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS-GVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEE 91 (369)
Q Consensus 13 IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~-~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~ 91 (369)
|+||.+.++++++ .++++++.|..+.+++.+. +.+.+.. ..+|||||+|||. +|. +...
T Consensus 2 il~idn~dsft~n--------l~~~l~~~g~~v~v~~~~~~~~~~~~~--~~~d~iIlsgGP~-~p~--~~~~------- 61 (195)
T PRK07649 2 ILMIDNYDSFTFN--------LVQFLGELGQELVVKRNDEVTISDIEN--MKPDFLMISPGPC-SPN--EAGI------- 61 (195)
T ss_pred EEEEeCCCccHHH--------HHHHHHHCCCcEEEEeCCCCCHHHHhh--CCCCEEEECCCCC-ChH--hCCC-------
Confidence 7899998876555 4566888899999998763 4444433 2699999999984 331 1100
Q ss_pred HHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeecccCCC
Q 017539 92 LEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNY 171 (369)
Q Consensus 92 ~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~ 171 (369)
...+++. .+.++|+||||+|||+|+.++||++.+....+.
T Consensus 62 ---------------------~~~~i~~-~~~~~PvLGIClG~Qlla~~lGg~V~~~~~~~~------------------ 101 (195)
T PRK07649 62 ---------------------SMEVIRY-FAGKIPIFGVCLGHQSIAQVFGGEVVRAERLMH------------------ 101 (195)
T ss_pred ---------------------chHHHHH-hcCCCCEEEEcHHHHHHHHHcCCEEeeCCCccc------------------
Confidence 1234443 356899999999999999999999987542222
Q ss_pred CCceeEEEEcCCCcchhhhhccccccceEEEEecccchhhc--ccCCCeEEEEEcCCCcEEEEEeCCCCCCCCCCcEEEE
Q 017539 172 DGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVK--RLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGL 249 (369)
Q Consensus 172 ~~~~~~V~i~~~s~L~~~~~~~~~~~~~~~~vns~H~~~V~--~L~~g~~vlA~s~dg~Veaie~~~~~~~~~~~~i~Gv 249 (369)
|.++.+.. .+.++++.++ ..+.+++||++.|. .+|++++++|++++|.++|+++++ .++||+
T Consensus 102 -G~~~~i~~-~~~~lf~~~~-------~~~~v~~~H~~~v~~~~lp~~~~~~a~s~~~~v~a~~~~~-------~~i~gv 165 (195)
T PRK07649 102 -GKTSLMHH-DGKTIFSDIP-------NPFTATRYHSLIVKKETLPDCLEVTSWTEEGEIMAIRHKT-------LPIEGV 165 (195)
T ss_pred -CCeEEEEE-CCChhhcCCC-------CCCEEEEechheEecccCCCCeEEEEEcCCCcEEEEEECC-------CCEEEE
Confidence 22445544 3456666553 35788999999984 699999999999999999999985 679999
Q ss_pred cccCCccCCCCCCCCCCCCchHHHHHHHHHHH
Q 017539 250 QFHPERMRRPDSDEFDYPGCPSAYQEFVKAVI 281 (369)
Q Consensus 250 QFHPE~~~~~~~~~~~~~~~~~lf~~Fv~a~~ 281 (369)
|||||...++.+ ..+|++|++...
T Consensus 166 QFHPE~~~t~~g--------~~il~nfl~~~~ 189 (195)
T PRK07649 166 QFHPESIMTSHG--------KELLQNFIRKYS 189 (195)
T ss_pred EECCCCCCCccH--------HHHHHHHHHHhH
Confidence 999998776554 589999998653
No 15
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=99.96 E-value=6.3e-29 Score=223.89 Aligned_cols=165 Identities=26% Similarity=0.400 Sum_probs=126.1
Q ss_pred HHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhHH
Q 017539 33 YHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSI 112 (369)
Q Consensus 33 ~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~ 112 (369)
.++++++++|+.++++|++.+.+.+. ...+|||||+||++ +|. ++..
T Consensus 11 ~~~~~l~~~G~~~~~~~~~~~~~~~~--~~~~dgiil~GG~~-~~~------------------------------~~~~ 57 (178)
T cd01744 11 NILRELLKRGCEVTVVPYNTDAEEIL--KLDPDGIFLSNGPG-DPA------------------------------LLDE 57 (178)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHh--hcCCCEEEECCCCC-Chh------------------------------HhHH
Confidence 47899999999999999886655432 23699999999963 221 1133
Q ss_pred HHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeecccCCCCCceeEEEEcCCCcchhhhhc
Q 017539 113 ELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKDTPLHDWFKD 192 (369)
Q Consensus 113 e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~~~~~~V~i~~~s~L~~~~~~ 192 (369)
+..+++++++.++|+||||+|||+|+.++||++.+... + | .+..+++.....+
T Consensus 58 ~~~~~~~~~~~~~PvlGIC~G~Q~l~~~~Gg~v~~~~~---~----------~------~g~~~~v~~~~~~-------- 110 (178)
T cd01744 58 AIKTVRKLLGKKIPIFGICLGHQLLALALGAKTYKMKF---G----------H------RGSNHPVKDLITG-------- 110 (178)
T ss_pred HHHHHHHHHhCCCCEEEECHHHHHHHHHcCCceecCCC---C----------C------CCCceeeEEcCCC--------
Confidence 46789999999999999999999999999999986421 1 1 0224666543221
Q ss_pred cccccceEEEEecccchhhc--ccCCCeEEEEEc-CCCcEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCCc
Q 017539 193 SLEEEKMEIWVNSYHHQGVK--RLAQRFVPMAFA-PDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGC 269 (369)
Q Consensus 193 ~~~~~~~~~~vns~H~~~V~--~L~~g~~vlA~s-~dg~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~~~~~~ 269 (369)
..+.++++|+++++ ++|++++++|++ +|+.|||+++++ .+++|+|||||+..++.. .
T Consensus 111 ------~~~~v~~~H~~~v~~~~lp~~~~v~a~s~~~~~i~a~~~~~-------~~i~GvQfHPE~~~~~~~-------~ 170 (178)
T cd01744 111 ------RVYITSQNHGYAVDPDSLPGGLEVTHVNLNDGTVEGIRHKD-------LPVFSVQFHPEASPGPHD-------T 170 (178)
T ss_pred ------CcEEEEcCceEEEcccccCCceEEEEEECCCCcEEEEEECC-------CCeEEEeeCCCCCCCCCC-------c
Confidence 24568899999995 699999999998 588999999985 679999999999875322 2
Q ss_pred hHHHHHHH
Q 017539 270 PSAYQEFV 277 (369)
Q Consensus 270 ~~lf~~Fv 277 (369)
.++|++|+
T Consensus 171 ~~lf~~f~ 178 (178)
T cd01744 171 EYLFDEFL 178 (178)
T ss_pred hHhHhhhC
Confidence 57999985
No 16
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=99.96 E-value=9.7e-29 Score=244.30 Aligned_cols=168 Identities=26% Similarity=0.394 Sum_probs=129.7
Q ss_pred HHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhHH
Q 017539 33 YHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSI 112 (369)
Q Consensus 33 ~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~ 112 (369)
.++++|+++|+.++++|++.+.+++.+. .+|||||+|||+ +|. ++..
T Consensus 186 ni~~~L~~~G~~v~vvp~~~~~~~i~~~--~pDGIiLSgGPg-dp~------------------------------~~~~ 232 (358)
T TIGR01368 186 NILRRLVKRGCEVTVVPYDTDAEEIKKY--NPDGIFLSNGPG-DPA------------------------------AVEP 232 (358)
T ss_pred HHHHHHHHCCCEEEEEcCCCCHHHHHhh--CCCEEEECCCCC-CHH------------------------------HHHH
Confidence 5899999999999999998766665432 469999999974 331 1233
Q ss_pred HHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeecccCCCCCceeEEEEcCCCcchhhhhc
Q 017539 113 ELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKDTPLHDWFKD 192 (369)
Q Consensus 113 e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~~~~~~V~i~~~s~L~~~~~~ 192 (369)
+..+++++++ ++|+||||+|||+|+.++||++++.. ++ |. +..|+|......
T Consensus 233 ~i~~i~~~~~-~~PILGIClG~QlLa~a~Gg~v~kl~---~g----------h~------G~nhpV~~~~~~-------- 284 (358)
T TIGR01368 233 AIETIRKLLE-KIPIFGICLGHQLLALAFGAKTYKMK---FG----------HR------GGNHPVKDLITG-------- 284 (358)
T ss_pred HHHHHHHHHc-CCCEEEECHHHHHHHHHhCCceeccC---cC----------cC------CCceeeEECCCC--------
Confidence 4678888887 99999999999999999999998752 22 21 335777654321
Q ss_pred cccccceEEEEecccchhhc--ccC-CCeEEEEEc-CCCcEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCC
Q 017539 193 SLEEEKMEIWVNSYHHQGVK--RLA-QRFVPMAFA-PDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPG 268 (369)
Q Consensus 193 ~~~~~~~~~~vns~H~~~V~--~L~-~g~~vlA~s-~dg~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~~~~~ 268 (369)
..+.++++|+++|+ .++ ++|++++++ +||.|||+++++ .|++|||||||....+..
T Consensus 285 ------~v~itsqnH~~aV~~~~l~~~~l~vta~~~nDg~Vegi~h~~-------~pi~gVQfHPE~~~gp~d------- 344 (358)
T TIGR01368 285 ------RVEITSQNHGYAVDPDSLPAGDLEVTHVNLNDGTVEGIRHKD-------LPVFSVQYHPEASPGPHD------- 344 (358)
T ss_pred ------cEEEeecCCCcEEcccccCCCceEEEEEECCCCcEEEEEECC-------CCEEEEEECCCCCCCCCC-------
Confidence 13445678999996 356 789999998 699999999996 789999999999876543
Q ss_pred chHHHHHHHHHHH
Q 017539 269 CPSAYQEFVKAVI 281 (369)
Q Consensus 269 ~~~lf~~Fv~a~~ 281 (369)
...||++|++++.
T Consensus 345 ~~~lF~~F~~~~~ 357 (358)
T TIGR01368 345 TEYLFDEFIDLIK 357 (358)
T ss_pred hHHHHHHHHHHhh
Confidence 3689999998764
No 17
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.96 E-value=2.2e-29 Score=225.77 Aligned_cols=185 Identities=22% Similarity=0.357 Sum_probs=144.1
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCC-CChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCCh
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRV-SGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSP 89 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~-~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~ 89 (369)
-+|++++++++++.++++| +.+.|+.++++..+ .+.+.+.. ..+|+|+|+.||+ .|.-+
T Consensus 2 ~~IL~IDNyDSFtyNLv~y--------l~~lg~~v~V~rnd~~~~~~~~~--~~pd~iviSPGPG-~P~d~--------- 61 (191)
T COG0512 2 MMILLIDNYDSFTYNLVQY--------LRELGAEVTVVRNDDISLELIEA--LKPDAIVISPGPG-TPKDA--------- 61 (191)
T ss_pred ceEEEEECccchHHHHHHH--------HHHcCCceEEEECCccCHHHHhh--cCCCEEEEcCCCC-ChHHc---------
Confidence 4799999999887776655 66778999888876 23333332 2589999999986 34211
Q ss_pred hHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeecccC
Q 017539 90 EELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYD 169 (369)
Q Consensus 90 ~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~~~ 169 (369)
.....+|+++ ..++|+||||+|||.|+.++||++.+... +.|
T Consensus 62 ---------------------G~~~~~i~~~-~~~~PiLGVCLGHQai~~~fGg~V~~a~~------------~~H---- 103 (191)
T COG0512 62 ---------------------GISLELIRRF-AGRIPILGVCLGHQAIAEAFGGKVVRAKE------------PMH---- 103 (191)
T ss_pred ---------------------chHHHHHHHh-cCCCCEEEECccHHHHHHHhCCEEEecCC------------CcC----
Confidence 1235778887 66799999999999999999999987531 234
Q ss_pred CCCCceeEEEEcCCCcchhhhhccccccceEEEEecccchhhcc--cCCCeEEEEEcCCC-cEEEEEeCCCCCCCCCCcE
Q 017539 170 NYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKR--LAQRFVPMAFAPDG-LIEGFYDPDAYNPAEGKFI 246 (369)
Q Consensus 170 ~~~~~~~~V~i~~~s~L~~~~~~~~~~~~~~~~vns~H~~~V~~--L~~g~~vlA~s~dg-~Veaie~~~~~~~~~~~~i 246 (369)
|....+. ..++.+|+.++ ..|.+..||+..+++ +|+.+++.|++.|+ .|+|+++++ .|+
T Consensus 104 ---GK~s~i~-h~g~~iF~glp-------~~f~v~RYHSLvv~~~~lP~~l~vtA~~~d~~~IMai~h~~-------~pi 165 (191)
T COG0512 104 ---GKTSIIT-HDGSGLFAGLP-------NPFTVTRYHSLVVDPETLPEELEVTAESEDGGVIMAVRHKK-------LPI 165 (191)
T ss_pred ---Ceeeeee-cCCcccccCCC-------CCCEEEeeEEEEecCCCCCCceEEEEEeCCCCEEEEEeeCC-------CCE
Confidence 3334332 35678888886 368899999999987 99999999999765 999999996 899
Q ss_pred EEEcccCCccCCCCCCCCCCCCchHHHHHHHHH
Q 017539 247 MGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKA 279 (369)
Q Consensus 247 ~GvQFHPE~~~~~~~~~~~~~~~~~lf~~Fv~a 279 (369)
+|+|||||...++.| .+++++|++.
T Consensus 166 ~gvQFHPESilT~~G--------~~il~Nfl~~ 190 (191)
T COG0512 166 YGVQFHPESILTEYG--------HRILENFLRL 190 (191)
T ss_pred EEEecCCccccccch--------HHHHHHHHhh
Confidence 999999999998877 4899999975
No 18
>CHL00101 trpG anthranilate synthase component 2
Probab=99.96 E-value=5.5e-29 Score=226.64 Aligned_cols=183 Identities=19% Similarity=0.319 Sum_probs=133.6
Q ss_pred EEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCC-ChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhH
Q 017539 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS-GVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEE 91 (369)
Q Consensus 13 IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~-~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~ 91 (369)
|+|+++.++++++ .++++++.|..+.+++.+. +.+.+.. ..+|||||+||+. +| ++
T Consensus 2 iliid~~dsft~~--------l~~~l~~~g~~~~v~~~~~~~~~~~~~--~~~dgiiisgGpg-~~--~~---------- 58 (190)
T CHL00101 2 ILIIDNYDSFTYN--------LVQSLGELNSDVLVCRNDEIDLSKIKN--LNIRHIIISPGPG-HP--RD---------- 58 (190)
T ss_pred EEEEECCCchHHH--------HHHHHHhcCCCEEEEECCCCCHHHHhh--CCCCEEEECCCCC-Ch--HH----------
Confidence 7888888765433 5677888999999988753 4433322 3699999999974 22 11
Q ss_pred HHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeecccCCC
Q 017539 92 LEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNY 171 (369)
Q Consensus 92 ~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~ 171 (369)
+..+..+++ +.+.++|+||||+|||+|+.++||++.+....+ |
T Consensus 59 ------------------~~~~~~i~~-~~~~~~PiLGIClG~Qlla~~~Gg~V~~~~~~~------------~------ 101 (190)
T CHL00101 59 ------------------SGISLDVIS-SYAPYIPILGVCLGHQSIGYLFGGKIIKAPKPM------------H------ 101 (190)
T ss_pred ------------------CcchHHHHH-HhcCCCcEEEEchhHHHHHHHhCCEEEECCCcc------------c------
Confidence 112234444 467899999999999999999999998753212 2
Q ss_pred CCceeEEEEcCCCcchhhhhccccccceEEEEecccchhhc--ccCCCeEEEEEcCCCcEEEEEeCCCCCCCCCCc-EEE
Q 017539 172 DGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVK--RLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKF-IMG 248 (369)
Q Consensus 172 ~~~~~~V~i~~~s~L~~~~~~~~~~~~~~~~vns~H~~~V~--~L~~g~~vlA~s~dg~Veaie~~~~~~~~~~~~-i~G 248 (369)
+.+..+. ....+++..++ ..+.++++|++.|+ ++|++++++|++++|.++|+++++ .+ +||
T Consensus 102 -g~~~~~~-~~~~~l~~~~~-------~~~~v~~~H~~~v~~~~lp~~~~vla~s~~~~v~a~~~~~-------~~~i~g 165 (190)
T CHL00101 102 -GKTSKIY-HNHDDLFQGLP-------NPFTATRYHSLIIDPLNLPSPLEITAWTEDGLIMACRHKK-------YKMLRG 165 (190)
T ss_pred -CceeeEe-eCCcHhhccCC-------CceEEEcchhheeecccCCCceEEEEEcCCCcEEEEEeCC-------CCCEEE
Confidence 1233333 23445655553 35789999999995 699999999999999999999985 55 999
Q ss_pred EcccCCccCCCCCCCCCCCCchHHHHHHHHH
Q 017539 249 LQFHPERMRRPDSDEFDYPGCPSAYQEFVKA 279 (369)
Q Consensus 249 vQFHPE~~~~~~~~~~~~~~~~~lf~~Fv~a 279 (369)
+|||||+..+..+ .++|++|++.
T Consensus 166 vQfHPE~~~~~~g--------~~l~~nf~~~ 188 (190)
T CHL00101 166 IQFHPESLLTTHG--------QQILRNFLSL 188 (190)
T ss_pred EEeCCccCCChhH--------HHHHHHHHhh
Confidence 9999999765544 5899999874
No 19
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.96 E-value=1.4e-28 Score=243.54 Aligned_cols=168 Identities=27% Similarity=0.423 Sum_probs=132.5
Q ss_pred hHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhH
Q 017539 32 EYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDS 111 (369)
Q Consensus 32 ~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~ 111 (369)
..++++|+++|+.++++|++.+.+++... .+|||||+|||. +|. ++.
T Consensus 189 ~nivr~L~~~G~~v~vvp~~~~~~~i~~~--~~DGIvLSgGPg-dp~------------------------------~~~ 235 (360)
T PRK12564 189 RNILRELAERGCRVTVVPATTTAEEILAL--NPDGVFLSNGPG-DPA------------------------------ALD 235 (360)
T ss_pred HHHHHHHHHCCCEEEEEeCCCCHHHHHhc--CCCEEEEeCCCC-ChH------------------------------HHH
Confidence 45999999999999999998776665432 699999999974 331 123
Q ss_pred HHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeecccCCCCCceeEEEEcCCCcchhhhh
Q 017539 112 IELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKDTPLHDWFK 191 (369)
Q Consensus 112 ~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~~~~~~V~i~~~s~L~~~~~ 191 (369)
.+..+++++++.++|+||||+|||+|+.++||++++.. ++ |. +..|+|......
T Consensus 236 ~~~~~i~~~~~~~~PilGIClG~QlLa~a~Gg~v~kl~---~g----------h~------G~~~pv~~~~~~------- 289 (360)
T PRK12564 236 YAIEMIRELLEKKIPIFGICLGHQLLALALGAKTYKMK---FG----------HR------GANHPVKDLETG------- 289 (360)
T ss_pred HHHHHHHHHHHcCCeEEEECHHHHHHHHHhCCcEeccC---CC----------cc------CCceeeEECCCC-------
Confidence 45678999998899999999999999999999998752 22 11 335777654321
Q ss_pred ccccccceEEEEecccchhhc--ccCCCeEEEEEc-CCCcEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCC
Q 017539 192 DSLEEEKMEIWVNSYHHQGVK--RLAQRFVPMAFA-PDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPG 268 (369)
Q Consensus 192 ~~~~~~~~~~~vns~H~~~V~--~L~~g~~vlA~s-~dg~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~~~~~ 268 (369)
..+.++++|+++|+ ++|+++++++++ +||.|||+++++ .|+||||||||...++..
T Consensus 290 -------~~~its~~H~~~V~~~~lp~~l~v~a~~~~Dg~iegi~~~~-------~pi~gVQfHPE~~~gp~d------- 348 (360)
T PRK12564 290 -------KVEITSQNHGFAVDEDSLPANLEVTHVNLNDGTVEGLRHKD-------LPAFSVQYHPEASPGPHD------- 348 (360)
T ss_pred -------cEEEEecCcccEEcccccCCceEEEEEeCCCCcEEEEEECC-------CCEEEEEeCCcCCCCCCC-------
Confidence 23456779999995 799999999998 699999999986 789999999999876543
Q ss_pred chHHHHHHHHH
Q 017539 269 CPSAYQEFVKA 279 (369)
Q Consensus 269 ~~~lf~~Fv~a 279 (369)
...+|++|++.
T Consensus 349 ~~~lF~~F~~~ 359 (360)
T PRK12564 349 SAYLFDEFVEL 359 (360)
T ss_pred HHHHHHHHHHh
Confidence 36899999975
No 20
>PLN02335 anthranilate synthase
Probab=99.96 E-value=1e-28 Score=230.16 Aligned_cols=196 Identities=21% Similarity=0.307 Sum_probs=139.8
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCC-ChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS-GVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLS 88 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~-~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~ 88 (369)
.++|+|+.+.+.+++ ..+++|.+.|+.+.+++++. +.+.+.. ..+|||||+|||. +| ++...
T Consensus 18 ~~~ilviD~~dsft~--------~i~~~L~~~g~~~~v~~~~~~~~~~~~~--~~~d~iVisgGPg-~p--~d~~~---- 80 (222)
T PLN02335 18 NGPIIVIDNYDSFTY--------NLCQYMGELGCHFEVYRNDELTVEELKR--KNPRGVLISPGPG-TP--QDSGI---- 80 (222)
T ss_pred cCcEEEEECCCCHHH--------HHHHHHHHCCCcEEEEECCCCCHHHHHh--cCCCEEEEcCCCC-Ch--hhccc----
Confidence 467888877655433 36778899999999999753 4444432 2689999999985 33 11100
Q ss_pred hhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeeccc
Q 017539 89 PEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDY 168 (369)
Q Consensus 89 ~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~~ 168 (369)
. ...++ ....++|+||||+|||+|+.++||++.+.... ..|
T Consensus 81 ----------------------~--~~~~~-~~~~~~PiLGIClG~QlLa~alGg~v~~~~~~-----------~~~--- 121 (222)
T PLN02335 81 ----------------------S--LQTVL-ELGPLVPLFGVCMGLQCIGEAFGGKIVRSPFG-----------VMH--- 121 (222)
T ss_pred ----------------------h--HHHHH-HhCCCCCEEEecHHHHHHHHHhCCEEEeCCCc-----------ccc---
Confidence 0 12222 23567999999999999999999998875311 112
Q ss_pred CCCCCceeEEEEcCC--CcchhhhhccccccceEEEEecccchhhc--ccCCC-eEEEEEcCCCcEEEEEeCCCCCCCCC
Q 017539 169 DNYDGHRHVVKVVKD--TPLHDWFKDSLEEEKMEIWVNSYHHQGVK--RLAQR-FVPMAFAPDGLIEGFYDPDAYNPAEG 243 (369)
Q Consensus 169 ~~~~~~~~~V~i~~~--s~L~~~~~~~~~~~~~~~~vns~H~~~V~--~L~~g-~~vlA~s~dg~Veaie~~~~~~~~~~ 243 (369)
|.+.++..... ++++..++ ..+.++++|+++|+ ++|++ ++++|++++|.|+++++++ .
T Consensus 122 ----G~~~~v~~~~~~~~~Lf~~l~-------~~~~v~~~H~~~v~~~~lp~~~~~v~a~~~~~~v~ai~~~~------~ 184 (222)
T PLN02335 122 ----GKSSPVHYDEKGEEGLFSGLP-------NPFTAGRYHSLVIEKDTFPSDELEVTAWTEDGLIMAARHRK------Y 184 (222)
T ss_pred ----CceeeeEECCCCCChhhhCCC-------CCCEEEechhheEecccCCCCceEEEEEcCCCCEEEEEecC------C
Confidence 23456665432 35666553 35788999999995 57877 9999999999999999985 1
Q ss_pred CcEEEEcccCCccCCCCCCCCCCCCchHHHHHHHHHHHHHHHh
Q 017539 244 KFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVIAYQKK 286 (369)
Q Consensus 244 ~~i~GvQFHPE~~~~~~~~~~~~~~~~~lf~~Fv~a~~~~~~~ 286 (369)
+++||+|||||+..++.+ ..+|++|++.+.+++.+
T Consensus 185 ~~i~GvQfHPE~~~~~~g--------~~i~~nF~~~~~~~~~~ 219 (222)
T PLN02335 185 KHIQGVQFHPESIITTEG--------KTIVRNFIKIIEKKESE 219 (222)
T ss_pred CCEEEEEeCCCCCCChhH--------HHHHHHHHHHHHhhccc
Confidence 349999999999876554 58999999988765543
No 21
>PRK05380 pyrG CTP synthetase; Validated
Probab=99.96 E-value=1.3e-28 Score=251.27 Aligned_cols=222 Identities=21% Similarity=0.269 Sum_probs=154.0
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCC----CEEEEEcCCCC-hh--hhhhhcCCCCEEEECCCCCCCCCCccc
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYG----AVPAIVPRVSG-VH--MLLDSFEPIHGVLLCEGEDIDPSLYEA 82 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~G----a~~vivp~~~~-~~--~l~~~l~~~DGlll~GG~didp~~y~~ 82 (369)
.-+|++|.-+......+ .+..++|+.+| ..+.+...++. .+ ...+.++.+||||||||.+ ++
T Consensus 288 ~v~IalVGKY~~l~DaY-----~Sv~eAL~hag~~~~~~v~i~wIdse~l~~~~~~~~L~~~DGIIlpGGfG-~~----- 356 (533)
T PRK05380 288 EVTIALVGKYVELPDAY-----KSVIEALKHAGIANDVKVNIKWIDSEDLEEENVAELLKGVDGILVPGGFG-ER----- 356 (533)
T ss_pred ceEEEEEeCccCCcHHH-----HHHHHHHHHHHHHcCCeeEEEEEChhhccCcchhhHhhcCCEEEecCCCC-cc-----
Confidence 35688887664322221 22445565555 33443322221 11 1345678899999999953 11
Q ss_pred cCCCCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCee--eecc-chhhhccCCC
Q 017539 83 ETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTL--YQDI-EKEVSRKCPE 159 (369)
Q Consensus 83 ~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l--~~~~-~~e~g~~~~~ 159 (369)
.. ...+.++++++++++|+||||+|||+|++++||++ +++. ..|+++. +
T Consensus 357 -~~-------------------------~g~i~~i~~a~e~~iPiLGIClGmQll~va~Ggnv~g~qda~s~E~~~~--t 408 (533)
T PRK05380 357 -GI-------------------------EGKILAIRYARENNIPFLGICLGMQLAVIEFARNVLGLEDANSTEFDPD--T 408 (533)
T ss_pred -cc-------------------------ccHHHHHHHHHHCCCcEEEEchHHHHHHHHhcccccCcccCcccccCCC--C
Confidence 10 11357889999999999999999999999999998 4666 3455421 1
Q ss_pred Ccce-eeccc---C-----CCCCceeEEEEcCCCcchhhhhcccccc--ceEEEEecccchhhcccCCCeEEEEEcCCC-
Q 017539 160 NQRV-VHIDY---D-----NYDGHRHVVKVVKDTPLHDWFKDSLEEE--KMEIWVNSYHHQGVKRLAQRFVPMAFAPDG- 227 (369)
Q Consensus 160 ~~~v-~H~~~---~-----~~~~~~~~V~i~~~s~L~~~~~~~~~~~--~~~~~vns~H~~~V~~L~~g~~vlA~s~dg- 227 (369)
..++ .++.. . .+..+.|+|.+.++|.++++|+...+.+ +++|.||+.|+|++++ .+++++|+++||
T Consensus 409 ~~pvI~~~~~q~~~~~~ggtmrlg~h~v~i~~gS~l~~iyg~~~i~ErhrHryeVNs~h~qal~~--~GL~vsa~s~Dgg 486 (533)
T PRK05380 409 PHPVIDLMPEQKDVSDLGGTMRLGAYPCKLKPGTLAAEIYGKEEIYERHRHRYEVNNKYREQLEK--AGLVFSGTSPDGR 486 (533)
T ss_pred CCCeEeeccccccccccCCcccccceeEEECCCChHHHHhCCCceeeecccceecCHHHHHHHhh--cCeEEEEEcCCCC
Confidence 1222 12111 0 1223579999999999999998654333 4789999999999987 499999999875
Q ss_pred cEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCCchHHHHHHHHHHHHHHH
Q 017539 228 LIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVIAYQK 285 (369)
Q Consensus 228 ~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~~~~~~~~lf~~Fv~a~~~~~~ 285 (369)
.|||+|.++ ++|++|||||||+.+.+..+ .++|++|+++|.++++
T Consensus 487 lVEaIEl~~------hpfflGVQwHPE~~s~p~~~-------~pLF~~FV~Aa~~~~~ 531 (533)
T PRK05380 487 LVEIVELPD------HPWFVGVQFHPEFKSRPRRP-------HPLFAGFVKAALENKK 531 (533)
T ss_pred cEEEEEeCC------CCEEEEEeCCCCCCCCCCch-------HHHHHHHHHHHHHHhh
Confidence 999999986 57888999999998876543 5899999999987554
No 22
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=99.96 E-value=1.4e-28 Score=224.45 Aligned_cols=182 Identities=21% Similarity=0.326 Sum_probs=133.4
Q ss_pred EEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCC-CChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhH
Q 017539 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRV-SGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEE 91 (369)
Q Consensus 13 IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~-~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~ 91 (369)
|+++++.++++++ +++++++.|..+.++++. .+.+.+.+. .+|||+++|||. +| +++
T Consensus 2 il~id~~dsft~~--------~~~~l~~~g~~~~~~~~~~~~~~~~~~~--~~~~iilsgGp~-~~--~~~--------- 59 (193)
T PRK08857 2 LLMIDNYDSFTYN--------LYQYFCELGAQVKVVRNDEIDIDGIEAL--NPTHLVISPGPC-TP--NEA--------- 59 (193)
T ss_pred EEEEECCCCcHHH--------HHHHHHHCCCcEEEEECCCCCHHHHhhC--CCCEEEEeCCCC-Ch--HHC---------
Confidence 8889998876555 567788899999999976 344333322 589999999973 22 111
Q ss_pred HHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeecccCCC
Q 017539 92 LEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNY 171 (369)
Q Consensus 92 ~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~ 171 (369)
.....+++. ++.++|+||||+|||+|+.++||++.+....+.|
T Consensus 60 -------------------~~~~~~i~~-~~~~~PiLGIClG~Qlia~a~Gg~v~~~~~~~~G----------------- 102 (193)
T PRK08857 60 -------------------GISLQAIEH-FAGKLPILGVCLGHQAIAQVFGGQVVRARQVMHG----------------- 102 (193)
T ss_pred -------------------cchHHHHHH-hcCCCCEEEEcHHHHHHHHHhCCEEEeCCCceeC-----------------
Confidence 112345555 4679999999999999999999999875422222
Q ss_pred CCceeEEEEcCCCcchhhhhccccccceEEEEecccchhhc--ccCCCeEEEEEcC--CC---cEEEEEeCCCCCCCCCC
Q 017539 172 DGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVK--RLAQRFVPMAFAP--DG---LIEGFYDPDAYNPAEGK 244 (369)
Q Consensus 172 ~~~~~~V~i~~~s~L~~~~~~~~~~~~~~~~vns~H~~~V~--~L~~g~~vlA~s~--dg---~Veaie~~~~~~~~~~~ 244 (369)
...++... ++.++..++ ..+.+++||+++|+ +||++++++|+++ |+ .|+++++++ .
T Consensus 103 --~~~~~~~~-~~~l~~~~~-------~~~~v~~~H~~~v~~~~lp~~~~v~a~s~~~~~~~~~i~~~~~~~-------~ 165 (193)
T PRK08857 103 --KTSPIRHT-GRSVFKGLN-------NPLTVTRYHSLVVKNDTLPECFELTAWTELEDGSMDEIMGFQHKT-------L 165 (193)
T ss_pred --ceEEEEEC-CCcccccCC-------CccEEEEccEEEEEcCCCCCCeEEEEEecCcCCCcceEEEEEeCC-------C
Confidence 12445443 344554443 35789999999986 7999999999986 54 589999986 7
Q ss_pred cEEEEcccCCccCCCCCCCCCCCCchHHHHHHHH
Q 017539 245 FIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVK 278 (369)
Q Consensus 245 ~i~GvQFHPE~~~~~~~~~~~~~~~~~lf~~Fv~ 278 (369)
|+||+|||||+..+..+ ..+|++|++
T Consensus 166 pi~gvQfHPE~~~t~~g--------~~i~~nFl~ 191 (193)
T PRK08857 166 PIEAVQFHPESIKTEQG--------HQLLANFLA 191 (193)
T ss_pred CEEEEeeCCCcCCCcch--------HHHHHHHHh
Confidence 99999999999876554 589999986
No 23
>PRK05637 anthranilate synthase component II; Provisional
Probab=99.96 E-value=3.4e-28 Score=224.52 Aligned_cols=194 Identities=21% Similarity=0.296 Sum_probs=137.1
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChh
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPE 90 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~ 90 (369)
.+|+|+++.+.++++ .++.+++.|+.+.++|++.+.+++... .+|||||+|||. +| ++.
T Consensus 2 ~~il~iD~~dsf~~n--------l~~~l~~~g~~~~v~~~~~~~~~l~~~--~~~~iIlsgGPg-~~--~d~-------- 60 (208)
T PRK05637 2 THVVLIDNHDSFVYN--------LVDAFAVAGYKCTVFRNTVPVEEILAA--NPDLICLSPGPG-HP--RDA-------- 60 (208)
T ss_pred CEEEEEECCcCHHHH--------HHHHHHHCCCcEEEEeCCCCHHHHHhc--CCCEEEEeCCCC-CH--HHh--------
Confidence 468888888765444 456788899999999987666665432 689999999984 22 110
Q ss_pred HHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeecccCC
Q 017539 91 ELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDN 170 (369)
Q Consensus 91 ~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~ 170 (369)
.....+++.+. .++||||||+|||+|+.++||++.+.. .+.|
T Consensus 61 --------------------~~~~~li~~~~-~~~PiLGIClG~Qlla~alGG~V~~~~-~~~G---------------- 102 (208)
T PRK05637 61 --------------------GNMMALIDRTL-GQIPLLGICLGFQALLEHHGGKVEPCG-PVHG---------------- 102 (208)
T ss_pred --------------------hHHHHHHHHHh-CCCCEEEEcHHHHHHHHHcCCeeccCC-cccc----------------
Confidence 01134555544 579999999999999999999998643 1222
Q ss_pred CCCceeEEEEcC---CCcchhhhhcccccc-----ceEEEEecccchhhcccCCCeEEEEEcCC--C-cEEEEEeCCCCC
Q 017539 171 YDGHRHVVKVVK---DTPLHDWFKDSLEEE-----KMEIWVNSYHHQGVKRLAQRFVPMAFAPD--G-LIEGFYDPDAYN 239 (369)
Q Consensus 171 ~~~~~~~V~i~~---~s~L~~~~~~~~~~~-----~~~~~vns~H~~~V~~L~~g~~vlA~s~d--g-~Veaie~~~~~~ 239 (369)
....+.+.. .++++..++.....+ ...+.|+++|++.|.++|++++++|++++ + .++++++++
T Consensus 103 ---~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~V~~~H~~~v~~lp~~~~vlA~s~~~~~~v~~a~~~~~--- 176 (208)
T PRK05637 103 ---TTDNMILTDAGVQSPVFAGLATDVEPDHPEIPGRKVPIARYHSLGCVVAPDGMESLGTCSSEIGPVIMAAETTD--- 176 (208)
T ss_pred ---eEEEeEECCCCCCCcccCCCCcccccccccccCCceEEEEechhhhhcCCCCeEEEEEecCCCCCEEEEEEECC---
Confidence 123343332 223443332110000 13578999999999999999999999755 3 678888875
Q ss_pred CCCCCcEEEEcccCCccCCCCCCCCCCCCchHHHHHHHHHHH
Q 017539 240 PAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVI 281 (369)
Q Consensus 240 ~~~~~~i~GvQFHPE~~~~~~~~~~~~~~~~~lf~~Fv~a~~ 281 (369)
.++||+|||||...++.| ..+|++|++...
T Consensus 177 ----~~~~GvQfHPE~~~T~~G--------~~il~nfl~~~~ 206 (208)
T PRK05637 177 ----GKAIGLQFHPESVLSPTG--------PIILSRCVEQLL 206 (208)
T ss_pred ----CCEEEEEeCCccCcCCCH--------HHHHHHHHHHHh
Confidence 789999999999999876 589999998654
No 24
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=99.96 E-value=2.4e-28 Score=222.31 Aligned_cols=184 Identities=24% Similarity=0.374 Sum_probs=138.1
Q ss_pred EEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhH
Q 017539 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEE 91 (369)
Q Consensus 12 ~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~ 91 (369)
+|+|+.+.+++..+ ..+++++.|+.+.+++.+.. . .+.++.+|||||+||++. |..|+
T Consensus 3 ~iliid~~dsf~~~--------i~~~l~~~g~~~~v~~~~~~--~-~~~l~~~d~iIi~gGp~~-~~~~~---------- 60 (190)
T PRK06895 3 KLLIINNHDSFTFN--------LVDLIRKLGVPMQVVNVEDL--D-LDEVENFSHILISPGPDV-PRAYP---------- 60 (190)
T ss_pred EEEEEeCCCchHHH--------HHHHHHHcCCcEEEEECCcc--C-hhHhccCCEEEECCCCCC-hHHhh----------
Confidence 68888888654332 56778999999988886431 1 223457999999999852 32111
Q ss_pred HHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeecccCCC
Q 017539 92 LEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNY 171 (369)
Q Consensus 92 ~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~ 171 (369)
....+++. .+.++|+||||+|||+|+.++||++.+... +.|
T Consensus 61 --------------------~~~~~i~~-~~~~~PiLGIClG~Qlla~~~Gg~V~~~~~------------~~~------ 101 (190)
T PRK06895 61 --------------------QLFAMLER-YHQHKSILGVCLGHQTLCEFFGGELYNLNN------------VRH------ 101 (190)
T ss_pred --------------------HHHHHHHH-hcCCCCEEEEcHHHHHHHHHhCCeEeecCC------------Ccc------
Confidence 01345554 567899999999999999999999976421 234
Q ss_pred CCceeEEEEcCCCcchhhhhccccccceEEEEecccchhhc--ccCCCeEEEEEcCCCcEEEEEeCCCCCCCCCCcEEEE
Q 017539 172 DGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVK--RLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGL 249 (369)
Q Consensus 172 ~~~~~~V~i~~~s~L~~~~~~~~~~~~~~~~vns~H~~~V~--~L~~g~~vlA~s~dg~Veaie~~~~~~~~~~~~i~Gv 249 (369)
+.+.++...+++++++.++ ..+.+..+|++.+. ++|+++.++|.+.++.++++++++ +|+||+
T Consensus 102 -g~~~~v~~~~~~~l~~~~~-------~~~~v~~~Hs~~v~~~~lp~~l~~~a~~~~~~i~a~~~~~-------~pi~Gv 166 (190)
T PRK06895 102 -GQQRPLKVRSNSPLFDGLP-------EEFNIGLYHSWAVSEENFPTPLEITAVCDENVVMAMQHKT-------LPIYGV 166 (190)
T ss_pred -CceEEEEECCCChhhhcCC-------CceEEEcchhheecccccCCCeEEEEECCCCcEEEEEECC-------CCEEEE
Confidence 2356777767788887775 25678899999996 589999999999999999999985 689999
Q ss_pred cccCCccCCCCCCCCCCCCchHHHHHHHHH
Q 017539 250 QFHPERMRRPDSDEFDYPGCPSAYQEFVKA 279 (369)
Q Consensus 250 QFHPE~~~~~~~~~~~~~~~~~lf~~Fv~a 279 (369)
|||||+..++.+ ..++++|++.
T Consensus 167 QFHPE~~~~~~g--------~~il~nf~~~ 188 (190)
T PRK06895 167 QFHPESYISEFG--------EQILRNWLAI 188 (190)
T ss_pred EeCCCcCCCcch--------HHHHHHHHhh
Confidence 999999776654 5899999863
No 25
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=99.96 E-value=3.2e-28 Score=220.04 Aligned_cols=182 Identities=21% Similarity=0.258 Sum_probs=133.4
Q ss_pred EEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhHH
Q 017539 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEEL 92 (369)
Q Consensus 13 IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~~ 92 (369)
|+|+++.+.+. ..+.+++++.|+.+.+++++.+.+.+.+ +..+||||++||+. ++ +++
T Consensus 1 il~~~~~~~~~--------~~~~~~l~~~G~~~~~~~~~~~~~~~~~-~~~~dgvil~gG~~-~~--~~~---------- 58 (184)
T cd01743 1 ILLIDNYDSFT--------YNLVQYLRELGAEVVVVRNDEITLEELE-LLNPDAIVISPGPG-HP--EDA---------- 58 (184)
T ss_pred CEEEeCCCccH--------HHHHHHHHHcCCceEEEeCCCCCHHHHh-hcCCCEEEECCCCC-Cc--ccc----------
Confidence 45666654432 2367889999999999998766544322 45799999999974 22 100
Q ss_pred HHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeecccCCCC
Q 017539 93 EEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNYD 172 (369)
Q Consensus 93 ~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~ 172 (369)
. +...+..++++++|+||||+|||+|+.++||++.+....+.
T Consensus 59 ------------------~-~~~~i~~~~~~~~PvlGIC~G~Qlla~~~Gg~v~~~~~~~~------------------- 100 (184)
T cd01743 59 ------------------G-ISLEIIRALAGKVPILGVCLGHQAIAEAFGGKVVRAPEPMH------------------- 100 (184)
T ss_pred ------------------h-hHHHHHHHHhcCCCEEEECHhHHHHHHHhCCEEEeCCCCCc-------------------
Confidence 1 12334444567899999999999999999999887532111
Q ss_pred CceeEEEEcCCCcchhhhhccccccceEEEEecccchhhcccCCC--eEEEEEcCCCcEEEEEeCCCCCCCCCCcEEEEc
Q 017539 173 GHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQR--FVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQ 250 (369)
Q Consensus 173 ~~~~~V~i~~~s~L~~~~~~~~~~~~~~~~vns~H~~~V~~L~~g--~~vlA~s~dg~Veaie~~~~~~~~~~~~i~GvQ 250 (369)
+.++++.+.+ +.++..++ ..+.++.+|++.|..+|.+ ++++|.++++.|+|+++++ .++||+|
T Consensus 101 g~~~~v~~~~-~~~~~~~~-------~~~~~~~~H~~~v~~~~~~~~~~~la~~~~~~v~a~~~~~-------~~i~gvQ 165 (184)
T cd01743 101 GKTSEIHHDG-SGLFKGLP-------QPFTVGRYHSLVVDPDPLPDLLEVTASTEDGVIMALRHRD-------LPIYGVQ 165 (184)
T ss_pred CceeEEEECC-CccccCCC-------CCcEEEeCcEEEEecCCCCceEEEEEeCCCCeEEEEEeCC-------CCEEEEe
Confidence 2356776653 44554443 3567889999999888877 9999999999999999985 6899999
Q ss_pred ccCCccCCCCCCCCCCCCchHHHHHHH
Q 017539 251 FHPERMRRPDSDEFDYPGCPSAYQEFV 277 (369)
Q Consensus 251 FHPE~~~~~~~~~~~~~~~~~lf~~Fv 277 (369)
||||+..++.+ .+||++|+
T Consensus 166 fHPE~~~~~~g--------~~l~~~f~ 184 (184)
T cd01743 166 FHPESILTEYG--------LRLLENFL 184 (184)
T ss_pred eCCCcCCCcch--------HHHHHhhC
Confidence 99999877665 58999994
No 26
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=99.96 E-value=5.7e-28 Score=226.81 Aligned_cols=213 Identities=23% Similarity=0.250 Sum_probs=140.6
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCCh-hhh--hhhcCCCCEEEECCCCCCCCCCccccCCCC
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGV-HML--LDSFEPIHGVLLCEGEDIDPSLYEAETSNL 87 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~-~~l--~~~l~~~DGlll~GG~didp~~y~~~~~~~ 87 (369)
++|++|..++..-..+.+ +-.....+....++.+.++..+... +.. .+.++.+|||||+||++. +..
T Consensus 1 ~~i~lvg~~~~~~day~s-~~~~L~~a~~~~~~~v~~~~i~~~~~~~~~~~~~l~~~dgivl~GG~~~-~~~-------- 70 (235)
T cd01746 1 VRIALVGKYVELPDAYLS-VLEALKHAGIALGVKLEIKWIDSEDLEEENAEEALKGADGILVPGGFGI-RGV-------- 70 (235)
T ss_pred CEEEEEECCcCCHHHHHH-HHHHHHHHHHHcCCeeEEEEeChhhcCccchhhhhccCCEEEECCCCCC-cch--------
Confidence 478888877532222221 2222233333345555544333221 111 246778999999999742 110
Q ss_pred ChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccc---hhhhccCCCCccee
Q 017539 88 SPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIE---KEVSRKCPENQRVV 164 (369)
Q Consensus 88 ~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~---~e~g~~~~~~~~v~ 164 (369)
.....+++++++.++|+||||+|||+|+.++||++.+... .+..+. ...++.
T Consensus 71 -----------------------~~~~~~i~~~~~~~~PvlGIClG~Q~l~~~~g~~~~~~~~~~~~~~~~~--~~~~~~ 125 (235)
T cd01746 71 -----------------------EGKILAIKYARENNIPFLGICLGMQLAVIEFARNVLGLPDANSTEFDPD--TPHPVV 125 (235)
T ss_pred -----------------------hhHHHHHHHHHHCCceEEEEEhHHHHHHHHHHHHhcCCccCCccccCCC--CCCCEE
Confidence 1124678889999999999999999999999999865432 111100 111111
Q ss_pred e-cc--------cCCCCCceeEEEEcCCCcchhhhhccccccceEEEEecccchhhc-----c-cCCCeEEEEEcC-CCc
Q 017539 165 H-ID--------YDNYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVK-----R-LAQRFVPMAFAP-DGL 228 (369)
Q Consensus 165 H-~~--------~~~~~~~~~~V~i~~~s~L~~~~~~~~~~~~~~~~vns~H~~~V~-----~-L~~g~~vlA~s~-dg~ 228 (369)
. +. ...+..+.|.|.+.++|.+.++++. ..+.+|++|+|+|. + ++++++++|++. ||+
T Consensus 126 ~~~~~~~~~~~~~~~~rl~~h~v~i~~~s~l~~~~g~------~~~~~n~~H~~~v~~~~~~~~~~~~l~v~a~~~ddg~ 199 (235)
T cd01746 126 DLMPEQKGVKDLGGTMRLGAYPVILKPGTLAHKYYGK------DEVEERHRHRYEVNPEYVDELEEAGLRFSGTDPDGGL 199 (235)
T ss_pred EECcccccccccCcccccCceEEEECCCChHHHHhCC------CEEEEecCcccccCHHHHHHHhhCCeEEEEEeCCCCe
Confidence 1 10 0112234699999999999999963 46789999999884 3 389999999998 899
Q ss_pred EEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCCchHHHHHHH
Q 017539 229 IEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFV 277 (369)
Q Consensus 229 Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~~~~~~~~lf~~Fv 277 (369)
||++|.++ +.+++|+|||||+...+... .++|+.|+
T Consensus 200 ieaie~~~------~pf~lgvQ~HPE~~~~~~~~-------~~lF~~fv 235 (235)
T cd01746 200 VEIVELPD------HPFFVGTQFHPEFKSRPLKP-------HPLFVGFV 235 (235)
T ss_pred EEEEEcCC------CCcEEEEECCCCCcCCCCCc-------cHHHHHhC
Confidence 99999986 35677999999998865432 58999985
No 27
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.96 E-value=2.8e-28 Score=233.67 Aligned_cols=204 Identities=20% Similarity=0.251 Sum_probs=141.8
Q ss_pred EEEecCcccCc---CcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCC-CCCCCCccccCCCCC
Q 017539 13 VLIVSRRSVRK---NKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGE-DIDPSLYEAETSNLS 88 (369)
Q Consensus 13 IgIv~~~~~~~---~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~-didp~~y~~~~~~~~ 88 (369)
|||++++.... +...+|+.+.|+++++++|+++++|+.+.+.+.+.+.++.+||||++||+ +++++.|..
T Consensus 1 igil~~~~~~~~~~~~~~~yi~~~Yv~~l~~aG~~vvpi~~~~~~~~l~~~l~~~dG~l~~Gg~~~~~~~~~~~------ 74 (273)
T cd01747 1 IGILTQPVDGAGSNKTGHSYIAASYVKFLESAGARVVPIWINESEEYYDKLFKSINGILFPGGAVDIDTSGYAR------ 74 (273)
T ss_pred CeEEeeecCccccccchhHHHHHHHHHHHHHCCCeEEEEEeCCcHHHHHHHHhhCCEEEECCCCCcCCccccch------
Confidence 79999876322 34468999999999999999988888776667788888999999999996 654322211
Q ss_pred hhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcC-----CCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcce
Q 017539 89 PEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERN-----IPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRV 163 (369)
Q Consensus 89 ~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~-----iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v 163 (369)
.+..+++.+++.+ +|+||||+|||+|+.++||++.... ...
T Consensus 75 -----------------------~~~~l~~~a~~~~~~g~~~Pv~GiClG~QlL~~~~gg~~~~~~--~~~--------- 120 (273)
T cd01747 75 -----------------------TAKIIYNLALERNDAGDYFPVWGTCLGFELLTYLTSGETLLLE--ATE--------- 120 (273)
T ss_pred -----------------------HHHHHHHHHHHhhhcCCCCcEEEEcHHHHHHHHHhCCCccccC--CCc---------
Confidence 1235667776654 8999999999999999999743110 110
Q ss_pred eecccCCCCCceeEEEEcC---CCcchhhhhcccccc-ceEEEEecccchhhc--ccC------CCeEEEEEcCC--C--
Q 017539 164 VHIDYDNYDGHRHVVKVVK---DTPLHDWFKDSLEEE-KMEIWVNSYHHQGVK--RLA------QRFVPMAFAPD--G-- 227 (369)
Q Consensus 164 ~H~~~~~~~~~~~~V~i~~---~s~L~~~~~~~~~~~-~~~~~vns~H~~~V~--~L~------~g~~vlA~s~d--g-- 227 (369)
.| +...++.+++ .+++++.++.++... .....+..+|+++|+ .++ ..|+++|++.| |
T Consensus 121 ~~-------~~~~~l~~t~~~~~s~lF~~~p~~l~~~l~~~~~~~~~Hs~~v~~~~~~~~~~l~~~~~vla~~~d~~g~~ 193 (273)
T cd01747 121 AT-------NSALPLNFTEDALQSRLFKRFPPDLLKSLATEPLTMNNHRYGISPENFTENGLLSDFFNVLTTNDDWNGVE 193 (273)
T ss_pred cc-------cceEEEEEccccccChhhhcCCHHHHHHHhcccHHHhhcccccCHhhcccccccccceEEEEEEecCCCce
Confidence 01 2356777665 467777665432211 112344567888884 333 56799999866 5
Q ss_pred cEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCCch
Q 017539 228 LIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCP 270 (369)
Q Consensus 228 ~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~~~~~~~ 270 (369)
+|+++++++ .|++|+|||||+...+.+.....|+..
T Consensus 194 fis~ie~~~-------~pi~gvQFHPEks~few~~~~~~~hs~ 229 (273)
T cd01747 194 FISTVEAYK-------YPIYGVQWHPEKNAFEWKKSSSIPHSE 229 (273)
T ss_pred EEEEEEecC-------CceEEEecCCCcccccccccCCCCCCH
Confidence 689999985 789999999999988766533344443
No 28
>PLN02347 GMP synthetase
Probab=99.96 E-value=3.8e-28 Score=251.43 Aligned_cols=197 Identities=22% Similarity=0.302 Sum_probs=150.2
Q ss_pred CCCCcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCC
Q 017539 7 SVILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSN 86 (369)
Q Consensus 7 ~~~~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~ 86 (369)
.+.+.+|+|++..+.+ ....++.+++.|+.++++|++.+.+++... .+||||||||+. +.|++...
T Consensus 7 ~~~~~~IlIID~G~~~--------t~~I~r~lrelgv~~~v~p~~~~~~~i~~~--~~dgIILsGGP~---sv~~~~~p- 72 (536)
T PLN02347 7 KSYLDVVLILDYGSQY--------THLITRRVRELGVYSLLLSGTASLDRIASL--NPRVVILSGGPH---SVHVEGAP- 72 (536)
T ss_pred cccCCEEEEEECCCcH--------HHHHHHHHHHCCCeEEEEECCCCHHHHhcC--CCCEEEECCCCC---cccccCCc-
Confidence 5567889999876543 123567889999999999998777776543 699999999963 23332111
Q ss_pred CChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeec
Q 017539 87 LSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHI 166 (369)
Q Consensus 87 ~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~ 166 (369)
.+...+++.+.+.++|+||||+|||+|+.++||++.+....++|
T Consensus 73 ------------------------~~~~~i~~~~~~~~iPILGIClG~QlLa~alGG~V~~~~~~e~G------------ 116 (536)
T PLN02347 73 ------------------------TVPEGFFDYCRERGVPVLGICYGMQLIVQKLGGEVKPGEKQEYG------------ 116 (536)
T ss_pred ------------------------hhhHHHHHHHHhcCCcEEEECHHHHHHHHHcCCEEEecCCcccc------------
Confidence 01124556666779999999999999999999999875433333
Q ss_pred ccCCCCCceeEEEEcCCCcchhhhhccccccceEEEEecccchhhcccCCCeEEEEEcCCCcEEEEEeCCCCCCCCCCcE
Q 017539 167 DYDNYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFI 246 (369)
Q Consensus 167 ~~~~~~~~~~~V~i~~~s~L~~~~~~~~~~~~~~~~vns~H~~~V~~L~~g~~vlA~s~dg~Veaie~~~~~~~~~~~~i 246 (369)
+.++.+..++++++.+++ ...+.++.+|++.|..+|++|+++|++++|.|+|+++++ .++
T Consensus 117 --------~~~v~i~~~~~Lf~~l~~-----~~~~~v~~~Hsd~V~~lP~g~~vlA~s~~~~iaai~~~~-------~~i 176 (536)
T PLN02347 117 --------RMEIRVVCGSQLFGDLPS-----GETQTVWMSHGDEAVKLPEGFEVVAKSVQGAVVAIENRE-------RRI 176 (536)
T ss_pred --------eEEEEEcCCChhhhcCCC-----CceEEEEEEEEEEeeeCCCCCEEEEEeCCCcEEEEEECC-------CCE
Confidence 566777777888877752 123678889999999999999999999999999999975 789
Q ss_pred EEEcccCCccCCCCCCCCCCCCchHHHHHHHHHHH
Q 017539 247 MGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVI 281 (369)
Q Consensus 247 ~GvQFHPE~~~~~~~~~~~~~~~~~lf~~Fv~a~~ 281 (369)
||+|||||++.++.| ..++++|+..+.
T Consensus 177 ~GvQFHPE~~~t~~G--------~~iL~NFl~~ic 203 (536)
T PLN02347 177 YGLQYHPEVTHSPKG--------METLRHFLFDVC 203 (536)
T ss_pred EEEEccCCCCccchH--------HHHHHHHHHHHh
Confidence 999999999987665 488999985443
No 29
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=99.96 E-value=7e-28 Score=245.94 Aligned_cols=216 Identities=20% Similarity=0.247 Sum_probs=152.8
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCC---EEEEEcCCCChhhhh---hhcCCCCEEEECCCCCCCCCCcccc
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGA---VPAIVPRVSGVHMLL---DSFEPIHGVLLCEGEDIDPSLYEAE 83 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga---~~vivp~~~~~~~l~---~~l~~~DGlll~GG~didp~~y~~~ 83 (369)
.++|+|+..+..... .| .+++++|..+|+ ..+.+.|....+... +.|+.+|||+||||++ ++..
T Consensus 289 ~v~IalVGKY~~~~d---aY--~SI~eAL~~ag~~~~~~V~~~~i~se~i~~~~~~~L~~~dGIiLpGG~G-~~~~---- 358 (525)
T TIGR00337 289 EVTIGIVGKYVELKD---SY--LSVIEALKHAGAKLDTKVNIKWIDSEDLEEEGAEFLKGVDGILVPGGFG-ERGV---- 358 (525)
T ss_pred CcEEEEEeCCcCCHH---HH--HHHHHHHHhCccccCCEEEEEEecHHHhhhhhhhhhcCCCEEEeCCCCC-Chhh----
Confidence 589999988754211 12 368889999986 223233332222211 2367899999999974 2210
Q ss_pred CCCCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccc---hhhhccCCCC
Q 017539 84 TSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIE---KEVSRKCPEN 160 (369)
Q Consensus 84 ~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~---~e~g~~~~~~ 160 (369)
...+.+++++++.++|+||||+|||+|+.++|+++++... .|+.+. ..
T Consensus 359 ---------------------------~g~i~ai~~a~e~~iP~LGIClG~Qll~i~~grnv~gl~~A~s~Ef~~~--~~ 409 (525)
T TIGR00337 359 ---------------------------EGKILAIKYARENNIPFLGICLGMQLAVIEFARNVLGLKGANSTEFDPE--TK 409 (525)
T ss_pred ---------------------------cChHHHHHHHHHcCCCEEEEcHHHHHHHHHHHHHhcCCCCCCccccCCC--CC
Confidence 1124678999999999999999999999999999776431 333321 12
Q ss_pred cceeeccc---------CCCCCceeEEEEcCCCcchhhhhccccc--cceEEEEecccchhhcccCCCeEEEEEcCC-Cc
Q 017539 161 QRVVHIDY---------DNYDGHRHVVKVVKDTPLHDWFKDSLEE--EKMEIWVNSYHHQGVKRLAQRFVPMAFAPD-GL 228 (369)
Q Consensus 161 ~~v~H~~~---------~~~~~~~~~V~i~~~s~L~~~~~~~~~~--~~~~~~vns~H~~~V~~L~~g~~vlA~s~d-g~ 228 (369)
.++..... ..+..+.|+|.+.++|.+.++|+...+. .+++|.||+.|+++++. ++++++|+++| |.
T Consensus 410 ~pVi~l~~~~~~~~~~GGTmRLG~h~v~i~~gS~L~~iyG~~~i~erhrHry~VNs~h~q~l~~--~GL~vsa~s~Dgg~ 487 (525)
T TIGR00337 410 YPVVDLLPEQKDISDLGGTMRLGLYPCILKPGTLAFKLYGKEEVYERHRHRYEVNNEYREQLEN--KGLIVSGTSPDGRL 487 (525)
T ss_pred CCeeeccCcccccccCCceeeccceEEEECCCChHHHHhCCCceeecccceEEECHHHHHhhhh--CCeEEEEEECCCCE
Confidence 22221111 1123468999999999999999865322 24789999999999986 89999999998 59
Q ss_pred EEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCCchHHHHHHHHH
Q 017539 229 IEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKA 279 (369)
Q Consensus 229 Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~~~~~~~~lf~~Fv~a 279 (369)
|||+|.++ ++|++|||||||+.+.+..+ .++|+.|+++
T Consensus 488 VEaIE~~~------hpfflGVQwHPE~~s~p~~~-------~~LF~~FV~A 525 (525)
T TIGR00337 488 VEIIELPD------HPFFVACQFHPEFTSRPNRP-------HPLFLGFVKA 525 (525)
T ss_pred EEEEEECC------CCeEEEEecCCCCCCCCCch-------hHHHHHHHhC
Confidence 99999986 47788999999998876543 6999999874
No 30
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=99.96 E-value=9.3e-28 Score=231.76 Aligned_cols=173 Identities=26% Similarity=0.410 Sum_probs=140.2
Q ss_pred HHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhHH
Q 017539 33 YHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSI 112 (369)
Q Consensus 33 ~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~ 112 (369)
..+|.|.+.|+.+++||++.+.+++.++ ++|||+||.||+ ||... ..
T Consensus 192 nIlr~L~~rg~~vtVVP~~t~~eeIl~~--~pDGiflSNGPG-DP~~~------------------------------~~ 238 (368)
T COG0505 192 NILRELVKRGCRVTVVPADTSAEEILAL--NPDGIFLSNGPG-DPAPL------------------------------DY 238 (368)
T ss_pred HHHHHHHHCCCeEEEEcCCCCHHHHHhh--CCCEEEEeCCCC-ChhHH------------------------------HH
Confidence 6899999999999999999999888766 899999999986 55221 12
Q ss_pred HHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeecccCCCCCceeEEEEcCCCcchhhhhc
Q 017539 113 ELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKDTPLHDWFKD 192 (369)
Q Consensus 113 e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~~~~~~V~i~~~s~L~~~~~~ 192 (369)
.+..++..++..+|+||||+|||||+.|+|++.+++ ++|++ |.+|||+-...
T Consensus 239 ~i~~ik~l~~~~iPifGICLGHQllalA~Ga~T~Km---kFGHr----------------G~NhPV~dl~t--------- 290 (368)
T COG0505 239 AIETIKELLGTKIPIFGICLGHQLLALALGAKTYKM---KFGHR----------------GANHPVKDLDT--------- 290 (368)
T ss_pred HHHHHHHHhccCCCeEEEcHHHHHHHHhcCCceeec---ccCCC----------------CCCcCcccccC---------
Confidence 357888888888999999999999999999999987 56532 45788863221
Q ss_pred cccccceEEEEecccchhhc--ccCCCeEEEEEc-CCCcEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCCc
Q 017539 193 SLEEEKMEIWVNSYHHQGVK--RLAQRFVPMAFA-PDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGC 269 (369)
Q Consensus 193 ~~~~~~~~~~vns~H~~~V~--~L~~g~~vlA~s-~dg~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~~~~~~ 269 (369)
...+.+.++|+++|+ ++++..++..++ +||++|++++++ .|+++||||||.+..|...
T Consensus 291 -----grv~ITSQNHGyaVd~~s~~~~~~vth~nlnDgTvEGi~h~~-------~P~fSVQ~HPEAsPGPhDt------- 351 (368)
T COG0505 291 -----GRVYITSQNHGYAVDEDSLVETLKVTHVNLNDGTVEGIRHKD-------LPAFSVQYHPEASPGPHDT------- 351 (368)
T ss_pred -----CeEEEEecCCceecChhhcCCCceeEEEeCCCCCccceecCC-------CceEEEccCCCCCCCCccc-------
Confidence 135667789999997 355544677887 899999999997 8999999999999887764
Q ss_pred hHHHHHHHHHHHHHHH
Q 017539 270 PSAYQEFVKAVIAYQK 285 (369)
Q Consensus 270 ~~lf~~Fv~a~~~~~~ 285 (369)
..+|+.|++.+.+++.
T Consensus 352 ~ylFd~Fi~~~~~~~~ 367 (368)
T COG0505 352 RYLFDEFIELMEAAKK 367 (368)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 6899999999887553
No 31
>PRK00074 guaA GMP synthase; Reviewed
Probab=99.95 E-value=3.2e-28 Score=251.70 Aligned_cols=185 Identities=25% Similarity=0.365 Sum_probs=143.3
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCCh
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSP 89 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~ 89 (369)
+.+|+|++.-+.+ ...+.++|++.|+.+.++|++.+.+++.+. ++||||||||+. +.|+....
T Consensus 3 ~~~i~vlD~Gsq~--------~~li~r~lrelg~~~~v~p~~~~~~~l~~~--~~dgIIlsGGp~---sv~~~~~p---- 65 (511)
T PRK00074 3 HDKILILDFGSQY--------TQLIARRVRELGVYSEIVPYDISAEEIRAF--NPKGIILSGGPA---SVYEEGAP---- 65 (511)
T ss_pred CCEEEEEECCCCc--------HHHHHHHHHHCCCeEEEEECCCCHHHHhcc--CCCEEEECCCCc---ccccCCCc----
Confidence 3578888765332 234678999999999999988776666543 579999999974 44553211
Q ss_pred hHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeecccC
Q 017539 90 EELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYD 169 (369)
Q Consensus 90 ~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~~~ 169 (369)
.+.+.+++.++||||||+|||+|+.++||++.+....++|
T Consensus 66 -------------------------~~~~~i~~~~~PvLGIC~G~QlLa~~lGG~V~~~~~~e~G--------------- 105 (511)
T PRK00074 66 -------------------------RADPEIFELGVPVLGICYGMQLMAHQLGGKVERAGKREYG--------------- 105 (511)
T ss_pred -------------------------cccHHHHhCCCCEEEECHHHHHHHHHhCCeEEecCCcccc---------------
Confidence 1123345679999999999999999999999876433433
Q ss_pred CCCCceeEEEEcCCCcchhhhhccccccceEEEEecccchhhcccCCCeEEEEEcCCCcEEEEEeCCCCCCCCCCcEEEE
Q 017539 170 NYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGL 249 (369)
Q Consensus 170 ~~~~~~~~V~i~~~s~L~~~~~~~~~~~~~~~~vns~H~~~V~~L~~g~~vlA~s~dg~Veaie~~~~~~~~~~~~i~Gv 249 (369)
++.+.+.+++++++.+++ .+.++.+|++.|.++|++++++|+++++.++++++.+ .++||+
T Consensus 106 -----~~~i~i~~~~~Lf~~l~~-------~~~v~~~H~d~V~~lp~g~~vlA~s~~~~v~ai~~~~-------~~i~Gv 166 (511)
T PRK00074 106 -----RAELEVDNDSPLFKGLPE-------EQDVWMSHGDKVTELPEGFKVIASTENCPIAAIANEE-------RKFYGV 166 (511)
T ss_pred -----eEEEEEcCCChhhhcCCC-------ceEEEEECCeEEEecCCCcEEEEEeCCCCEEEEEeCC-------CCEEEE
Confidence 567777777778777742 4678889999999999999999999999999999875 679999
Q ss_pred cccCCccCCCCCCCCCCCCchHHHHHHHH
Q 017539 250 QFHPERMRRPDSDEFDYPGCPSAYQEFVK 278 (369)
Q Consensus 250 QFHPE~~~~~~~~~~~~~~~~~lf~~Fv~ 278 (369)
|||||++.++.+ ..+|++|+.
T Consensus 167 QFHPE~~~t~~G--------~~il~nFl~ 187 (511)
T PRK00074 167 QFHPEVTHTPQG--------KKLLENFVF 187 (511)
T ss_pred eCCCCcCCchhH--------HHHHHHHHH
Confidence 999999987554 589999984
No 32
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.95 E-value=3.4e-27 Score=233.04 Aligned_cols=171 Identities=24% Similarity=0.331 Sum_probs=130.7
Q ss_pred hhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhh
Q 017539 31 GEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKD 110 (369)
Q Consensus 31 ~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd 110 (369)
...++++|++.|+.++++|++.+.+++... .+|||||+|||+ +|.. +
T Consensus 178 k~ni~~~L~~~G~~v~vvp~~~~~~~i~~~--~~DGIiLsgGPg-dp~~------------------------------~ 224 (354)
T PRK12838 178 KKSILRSLSKRGCKVTVLPYDTSLEEIKNL--NPDGIVLSNGPG-DPKE------------------------------L 224 (354)
T ss_pred HHHHHHHHHHCCCeEEEEECCCCHHHHhhc--CCCEEEEcCCCC-ChHH------------------------------h
Confidence 356899999999999999998766665432 699999999985 4411 1
Q ss_pred HHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeecccCCCCCceeEEEEcCCCcchhhh
Q 017539 111 SIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKDTPLHDWF 190 (369)
Q Consensus 111 ~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~~~~~~V~i~~~s~L~~~~ 190 (369)
.....+++.++++ +|+||||+|||+|+.++||++++.. ++ |. +..|+|.....+
T Consensus 225 ~~~~~~i~~~~~~-~PvlGIClG~QlLa~a~Gg~v~kl~---~g----------h~------G~~hpV~~~~~~------ 278 (354)
T PRK12838 225 QPYLPEIKKLISS-YPILGICLGHQLIALALGADTEKLP---FG----------HR------GANHPVIDLTTG------ 278 (354)
T ss_pred HHHHHHHHHHhcC-CCEEEECHHHHHHHHHhCCEEecCC---CC----------cc------CCceEEEECCCC------
Confidence 1234677777776 9999999999999999999998752 22 11 346888764332
Q ss_pred hccccccceEEEEecccchhhcc--cCC-CeEEEEEc-CCCcEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCC
Q 017539 191 KDSLEEEKMEIWVNSYHHQGVKR--LAQ-RFVPMAFA-PDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDY 266 (369)
Q Consensus 191 ~~~~~~~~~~~~vns~H~~~V~~--L~~-g~~vlA~s-~dg~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~~~ 266 (369)
..+.++++|+++|+. ++. ++.+.+++ +|+.||||++++ .|+||||||||....+..
T Consensus 279 --------~~~~ts~~H~~aV~~~sl~~~~l~v~a~~~~Dg~Veai~~~~-------~pi~gVQfHPE~~~gp~d----- 338 (354)
T PRK12838 279 --------RVWMTSQNHGYVVDEDSLDGTPLSVRFFNVNDGSIEGLRHKK-------KPVLSVQFHPEAHPGPHD----- 338 (354)
T ss_pred --------eEEEeccchheEecccccCCCCcEEEEEECCCCeEEEEEECC-------CCEEEEEeCCCCCCCCcc-----
Confidence 245677899999964 664 58999986 799999999986 789999999999875432
Q ss_pred CCchHHHHHHHHHHHH
Q 017539 267 PGCPSAYQEFVKAVIA 282 (369)
Q Consensus 267 ~~~~~lf~~Fv~a~~~ 282 (369)
...+|++|++++++
T Consensus 339 --~~~lF~~F~~~~~~ 352 (354)
T PRK12838 339 --AEYIFDEFLEMMEK 352 (354)
T ss_pred --HHHHHHHHHHHHHh
Confidence 36899999998753
No 33
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.94 E-value=1.8e-26 Score=211.20 Aligned_cols=187 Identities=25% Similarity=0.315 Sum_probs=141.2
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHHCC-CEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCCh
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYG-AVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSP 89 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~G-a~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~ 89 (369)
.+|+|+...+. -.+.+-++++..| ....++|+..+.+.+... ..|||||+||| .+.|+++. |++
T Consensus 2 ~~ilIld~g~q--------~~~li~r~~re~g~v~~e~~~~~~~~~~~~~~--~~~giIlsGgp---~sv~~~~~--w~~ 66 (198)
T COG0518 2 RKILILDFGGQ--------YLGLIARRLRELGYVYSEIVPYTGDAEELPLD--SPDGIIISGGP---MSVYDEDP--WLP 66 (198)
T ss_pred cEEEEEeCCCc--------HhHHHHHHHHHcCCceEEEEeCCCCccccccc--CCCEEEEcCCC---CCCccccc--cch
Confidence 46777765532 1234678899999 777888988776665432 56999999997 35676654 222
Q ss_pred hHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeecccC
Q 017539 90 EELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYD 169 (369)
Q Consensus 90 ~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~~~ 169 (369)
. +...|+.+...++|+||||+|||+|+.++||++.+....|+|
T Consensus 67 ~----------------------~~~~i~~~~~p~~pvLGIC~G~Ql~A~~lGg~V~~~~~~E~G--------------- 109 (198)
T COG0518 67 R----------------------EKDLIKDAGVPGKPVLGICLGHQLLAKALGGKVERGPKREIG--------------- 109 (198)
T ss_pred h----------------------HHHHHHHhCCCCCCEEEEChhHHHHHHHhCCEEeccCCCccc---------------
Confidence 2 234555555566789999999999999999999987555665
Q ss_pred CCCCceeEEEEcC-CCcchhhhhccccccceEE-EEecccchhhcccCCCeEEEEEcCCCcEEEEEeCCCCCCCCCCcEE
Q 017539 170 NYDGHRHVVKVVK-DTPLHDWFKDSLEEEKMEI-WVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIM 247 (369)
Q Consensus 170 ~~~~~~~~V~i~~-~s~L~~~~~~~~~~~~~~~-~vns~H~~~V~~L~~g~~vlA~s~dg~Veaie~~~~~~~~~~~~i~ 247 (369)
+.+|++.+ .+.+++.+.. .. .|+.+|++.|++||++++++|.|+.+.++|+++. +++|
T Consensus 110 -----~~~v~~~~~~~~l~~gl~~-------~~~~v~~sH~D~v~~lP~g~~vlA~s~~cp~qa~~~~--------~~~~ 169 (198)
T COG0518 110 -----WTPVELTEGDDPLFAGLPD-------LFTTVFMSHGDTVVELPEGAVVLASSETCPNQAFRYG--------KRAY 169 (198)
T ss_pred -----eEEEEEecCccccccCCcc-------ccCccccchhCccccCCCCCEEEecCCCChhhheecC--------CcEE
Confidence 67888874 3457776642 23 5889999999999999999999999999999986 5799
Q ss_pred EEcccCCccCCCCCCCCCCCCchHHHHHHHH
Q 017539 248 GLQFHPERMRRPDSDEFDYPGCPSAYQEFVK 278 (369)
Q Consensus 248 GvQFHPE~~~~~~~~~~~~~~~~~lf~~Fv~ 278 (369)
|+|||||.+.. . ...++++|..
T Consensus 170 gvQFHpEv~~~-~--------~~~~l~nf~~ 191 (198)
T COG0518 170 GVQFHPEVTHE-Y--------GEALLENFAH 191 (198)
T ss_pred EEeeeeEEeHH-H--------HHHHHHHhhh
Confidence 99999999873 2 2578888874
No 34
>PRK13566 anthranilate synthase; Provisional
Probab=99.94 E-value=8.7e-26 Score=240.65 Aligned_cols=192 Identities=24% Similarity=0.241 Sum_probs=146.5
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCCh
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSP 89 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~ 89 (369)
-++|+||...+.+ .....+++++.|+.++++++..+.+.+.. ..+|||||+||+. +|..+
T Consensus 526 g~~IlvID~~dsf--------~~~l~~~Lr~~G~~v~vv~~~~~~~~~~~--~~~DgVVLsgGpg-sp~d~--------- 585 (720)
T PRK13566 526 GKRVLLVDHEDSF--------VHTLANYFRQTGAEVTTVRYGFAEEMLDR--VNPDLVVLSPGPG-RPSDF--------- 585 (720)
T ss_pred CCEEEEEECCCch--------HHHHHHHHHHCCCEEEEEECCCChhHhhh--cCCCEEEECCCCC-ChhhC---------
Confidence 4578888776432 33567889999999999998765544432 3699999999974 23110
Q ss_pred hHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeecccC
Q 017539 90 EELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYD 169 (369)
Q Consensus 90 ~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~~~ 169 (369)
....+++.++++++||||||+|||+|+.++||++.+....+ |
T Consensus 586 ----------------------~~~~lI~~a~~~~iPILGIClG~QlLa~alGG~V~~~~~~~------------~---- 627 (720)
T PRK13566 586 ----------------------DCKATIDAALARNLPIFGVCLGLQAIVEAFGGELGQLAYPM------------H---- 627 (720)
T ss_pred ----------------------CcHHHHHHHHHCCCcEEEEehhHHHHHHHcCCEEEECCCCc------------c----
Confidence 12478899999999999999999999999999998753211 1
Q ss_pred CCCCceeEEEEcCCCcchhhhhccccccceEEEEecccchhhc--ccCCCeEEEEEcCCCcEEEEEeCCCCCCCCCCcEE
Q 017539 170 NYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVK--RLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIM 247 (369)
Q Consensus 170 ~~~~~~~~V~i~~~s~L~~~~~~~~~~~~~~~~vns~H~~~V~--~L~~g~~vlA~s~dg~Veaie~~~~~~~~~~~~i~ 247 (369)
+.+++|.+..++.+++.++ ..+.++.+|++.+. .+|++++++|+++||.|++|++++ .++|
T Consensus 628 ---G~~~~V~v~~~~~Lf~~lp-------~~~~v~~~Hs~~v~~~~Lp~~~~vlA~s~dg~V~ai~~~~-------~pi~ 690 (720)
T PRK13566 628 ---GKPSRIRVRGPGRLFSGLP-------EEFTVGRYHSLFADPETLPDELLVTAETEDGVIMAIEHKT-------LPVA 690 (720)
T ss_pred ---CCceEEEECCCCchhhcCC-------CCCEEEEecceeEeeccCCCceEEEEEeCCCcEEEEEECC-------CCEE
Confidence 3357888887777777664 25778889988764 499999999999999999999985 6899
Q ss_pred EEcccCCccCCCCCCCCCCCCchHHHHHHHHHHH
Q 017539 248 GLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVI 281 (369)
Q Consensus 248 GvQFHPE~~~~~~~~~~~~~~~~~lf~~Fv~a~~ 281 (369)
|+|||||+..+..+. .-.+||++|++.|.
T Consensus 691 GVQFHPE~i~t~~~~-----~G~~ii~nfl~~~~ 719 (720)
T PRK13566 691 AVQFHPESIMTLGGD-----VGLRIIENVVRLLA 719 (720)
T ss_pred EEeccCeeCCcCCch-----hHHHHHHHHHHHhh
Confidence 999999997652211 12689999998874
No 35
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=99.94 E-value=1.6e-25 Score=222.70 Aligned_cols=169 Identities=26% Similarity=0.416 Sum_probs=125.1
Q ss_pred HHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhHH
Q 017539 33 YHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSI 112 (369)
Q Consensus 33 ~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~ 112 (369)
..+++|+++|+.++++|++.+.+++... .+|||||+|||+ +|+.+ ..
T Consensus 205 ni~~~L~~~G~~v~vvp~~~~~~~i~~~--~~dgIilSgGPg-~p~~~------------------------------~~ 251 (382)
T CHL00197 205 NILRRLKSFGCSITVVPATSPYQDILSY--QPDGILLSNGPG-DPSAI------------------------------HY 251 (382)
T ss_pred HHHHHHHHCCCeEEEEcCCCCHHHHhcc--CCCEEEEcCCCC-ChhHH------------------------------HH
Confidence 3789999999999999998877666433 699999999975 44211 11
Q ss_pred HHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeecccCCCCCceeEEEEcCCCcchhhhhc
Q 017539 113 ELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKDTPLHDWFKD 192 (369)
Q Consensus 113 e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~~~~~~V~i~~~s~L~~~~~~ 192 (369)
....++++++.++|+||||+|||+|+.++||++++.. +| |. +..|++.+. +
T Consensus 252 ~i~~i~~~~~~~~PilGIClGhQlLa~a~Gg~v~k~~---~G----------h~------g~n~pv~~~-~--------- 302 (382)
T CHL00197 252 GIKTVKKLLKYNIPIFGICMGHQILSLALEAKTFKLK---FG----------HR------GLNHPSGLN-Q--------- 302 (382)
T ss_pred HHHHHHHHHhCCCCEEEEcHHHHHHHHHhCCEEeccC---CC----------CC------CCCEecCCC-C---------
Confidence 2355677777789999999999999999999988753 22 11 224555321 0
Q ss_pred cccccceEEEEecccchhhc--ccCC-CeEEEEEc-CCCcEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCC
Q 017539 193 SLEEEKMEIWVNSYHHQGVK--RLAQ-RFVPMAFA-PDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPG 268 (369)
Q Consensus 193 ~~~~~~~~~~vns~H~~~V~--~L~~-g~~vlA~s-~dg~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~~~~~ 268 (369)
....+.++|++++. .++. ++.+++++ +|+.||++++++ .|+||||||||....+.+.
T Consensus 303 ------~v~itsq~H~~~v~~~sv~~~~~~vt~~~~nDgtvegi~h~~-------~pi~gVQFHPE~~~gp~d~------ 363 (382)
T CHL00197 303 ------QVEITSQNHGFAVNLESLAKNKFYITHFNLNDGTVAGISHSP-------KPYFSVQYHPEASPGPHDA------ 363 (382)
T ss_pred ------ceEEeecchheEeeccccCCCCcEEEEEECCCCCEEEEEECC-------CCcEEEeeCCCCCCCCCCH------
Confidence 12233468888873 4664 68999986 799999999996 7899999999998766542
Q ss_pred chHHHHHHHHHHHHH
Q 017539 269 CPSAYQEFVKAVIAY 283 (369)
Q Consensus 269 ~~~lf~~Fv~a~~~~ 283 (369)
..+|++|++.+++.
T Consensus 364 -~~lf~~Fv~~~~~~ 377 (382)
T CHL00197 364 -DYLFEYFIEIIKHS 377 (382)
T ss_pred -HHHHHHHHHHHHhh
Confidence 57999999988653
No 36
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.94 E-value=5.3e-26 Score=236.44 Aligned_cols=186 Identities=19% Similarity=0.299 Sum_probs=135.3
Q ss_pred EEEEecCcccCcCcccccchhHHHHHHHHCCCE-EEEE-cCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCCh
Q 017539 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAV-PAIV-PRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSP 89 (369)
Q Consensus 12 ~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~-~viv-p~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~ 89 (369)
+|+||+++++++++ .++.+++.|+. +.++ |...+.+.+... .+|||||+|||+ +|. +.
T Consensus 1 ~il~idn~dsft~n--------l~~~l~~~g~~~v~~~~~~~~~~~~~~~~--~~d~vIlsgGP~-~p~--~~------- 60 (534)
T PRK14607 1 MIILIDNYDSFTYN--------IYQYIGELGPEEIEVVRNDEITIEEIEAL--NPSHIVISPGPG-RPE--EA------- 60 (534)
T ss_pred CEEEEECchhHHHH--------HHHHHHHcCCCeEEEECCCCCCHHHHHhc--CCCEEEECCCCC-Chh--hC-------
Confidence 48899998765444 56678888986 4444 444455555332 589999999985 331 11
Q ss_pred hHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeecccC
Q 017539 90 EELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYD 169 (369)
Q Consensus 90 ~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~~~ 169 (369)
..+..+++. .+.++|+||||+|||+|+.++||++.+....+.
T Consensus 61 ---------------------~~~~~li~~-~~~~~PvLGIClG~QlLa~a~Gg~V~~~~~~~~---------------- 102 (534)
T PRK14607 61 ---------------------GISVEVIRH-FSGKVPILGVCLGHQAIGYAFGGKIVHAKRILH---------------- 102 (534)
T ss_pred ---------------------CccHHHHHH-hhcCCCEEEEcHHHHHHHHHcCCeEecCCcccc----------------
Confidence 112345555 357899999999999999999999987642222
Q ss_pred CCCCceeEEEEcCCCcchhhhhccccccceEEEEecccchhhc--ccCCCeEEEEEcCCCcEEEEEeCCCCCCCCCCcEE
Q 017539 170 NYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVK--RLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIM 247 (369)
Q Consensus 170 ~~~~~~~~V~i~~~s~L~~~~~~~~~~~~~~~~vns~H~~~V~--~L~~g~~vlA~s~dg~Veaie~~~~~~~~~~~~i~ 247 (369)
+..+++... ++.+++.++ ..+.++++|++.|+ .+|++++++|+++||.|+|+++++ .++|
T Consensus 103 ---G~~~~v~~~-~~~lf~~~~-------~~~~v~~~Hs~~v~~~~lp~~~~vlA~s~d~~i~a~~~~~-------~pi~ 164 (534)
T PRK14607 103 ---GKTSPIDHN-GKGLFRGIP-------NPTVATRYHSLVVEEASLPECLEVTAKSDDGEIMGIRHKE-------HPIF 164 (534)
T ss_pred ---CCceeEEEC-CCcchhcCC-------CCcEEeeccchheecccCCCCeEEEEEcCCCCEEEEEECC-------CCEE
Confidence 223455543 445555553 24678899999985 699999999999999999999985 6899
Q ss_pred EEcccCCccCCCCCCCCCCCCchHHHHHHHHHHH
Q 017539 248 GLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVI 281 (369)
Q Consensus 248 GvQFHPE~~~~~~~~~~~~~~~~~lf~~Fv~a~~ 281 (369)
|+|||||+..+..+ .++|++|++.+.
T Consensus 165 GvQFHPE~~~t~~g--------~~i~~nFl~~~~ 190 (534)
T PRK14607 165 GVQFHPESILTEEG--------KRILKNFLNYQR 190 (534)
T ss_pred EEEeCCCCCCChhH--------HHHHHHHHHHhh
Confidence 99999998765543 589999999774
No 37
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.93 E-value=2.3e-25 Score=201.60 Aligned_cols=165 Identities=23% Similarity=0.234 Sum_probs=121.7
Q ss_pred hhHHHHHHHHCC---CEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCc
Q 017539 31 GEYHLDLIVGYG---AVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDK 107 (369)
Q Consensus 31 ~~~~l~~l~~~G---a~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~ 107 (369)
...|.++++++| ..+.+++...... ...++.+|||||+||+. ++ .++... |+
T Consensus 13 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~--~~~~~~~dgvil~Gg~~-~~-~~~~~~---------~~------------ 67 (188)
T cd01741 13 PGLFEDLLREAGAETIEIDVVDVYAGEL--LPDLDDYDGLVILGGPM-SV-DEDDYP---------WL------------ 67 (188)
T ss_pred cchHHHHHHhcCCCCceEEEEecCCCCC--CCCcccCCEEEECCCCc-cC-CccCCh---------HH------------
Confidence 667899999999 4666666544322 34467899999999963 12 122111 11
Q ss_pred hhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeecccCCCCCceeEEEEcCCCcch
Q 017539 108 EKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKDTPLH 187 (369)
Q Consensus 108 ~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~~~~~~V~i~~~s~L~ 187 (369)
.....+++++.++++|+||||+|+|+|+.++||++.+.... .+ .+++++.+..+....
T Consensus 68 ---~~~~~~i~~~~~~~~pilgiC~G~q~l~~~lGG~v~~~~~~------------~~-------~g~~~v~~~~~~~~~ 125 (188)
T cd01741 68 ---KKLKELIRQALAAGKPVLGICLGHQLLARALGGKVGRNPKG------------WE-------IGWFPVTLTEAGKAD 125 (188)
T ss_pred ---HHHHHHHHHHHHCCCCEEEECccHHHHHHHhCCEEecCCCc------------ce-------eEEEEEEeccccccC
Confidence 22467889999999999999999999999999998875321 11 236778776644333
Q ss_pred hhhhccccccceEEEEecccchhhcccCCCeEEEEEcCCCcEEEEEeCCCCCCCCCCcEEEEcccCC
Q 017539 188 DWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQFHPE 254 (369)
Q Consensus 188 ~~~~~~~~~~~~~~~vns~H~~~V~~L~~g~~vlA~s~dg~Veaie~~~~~~~~~~~~i~GvQFHPE 254 (369)
.++.+ .+..+.++++|++.|.++|++++++|+++++.|++++.+ .+++|+|||||
T Consensus 126 ~l~~~----~~~~~~v~~~H~~~v~~lp~~~~~la~~~~~~v~~~~~~--------~~~~g~QfHPE 180 (188)
T cd01741 126 PLFAG----LPDEFPVFHWHGDTVVELPPGAVLLASSEACPNQAFRYG--------DRALGLQFHPE 180 (188)
T ss_pred chhhc----CCCcceEEEEeccChhhCCCCCEEeecCCCCCcceEEec--------CCEEEEccCch
Confidence 33321 123678999999999999999999999999999999986 57999999999
No 38
>PRK09065 glutamine amidotransferase; Provisional
Probab=99.93 E-value=2.7e-25 Score=209.12 Aligned_cols=157 Identities=22% Similarity=0.226 Sum_probs=114.8
Q ss_pred HHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhHHHHHH
Q 017539 37 LIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRL 116 (369)
Q Consensus 37 ~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~l 116 (369)
.+...|....++....+ +.+. .++.+|||||+||+. +.|++.+ |+ .-+..+
T Consensus 30 ~~~~~~~~~~~~~~~~~-~~~p-~~~~~dgvvi~Gg~~---~~~d~~~---------w~---------------~~~~~~ 80 (237)
T PRK09065 30 ALGLAEQPVVVVRVFAG-EPLP-APDDFAGVIITGSWA---MVTDRLD---------WS---------------ERTADW 80 (237)
T ss_pred HhccCCceEEEEeccCC-CCCC-ChhhcCEEEEeCCCc---ccCCCch---------hH---------------HHHHHH
Confidence 34446766665554332 1222 345799999999973 2344332 22 123578
Q ss_pred HHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccc-hhhhccCCCCcceeecccCCCCCceeEEEEcCC---Ccchhhhhc
Q 017539 117 AKLCLERNIPYLGICRGSQVLNVACGGTLYQDIE-KEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKD---TPLHDWFKD 192 (369)
Q Consensus 117 i~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~-~e~g~~~~~~~~v~H~~~~~~~~~~~~V~i~~~---s~L~~~~~~ 192 (369)
++.+++.++|+||||+|||+|+.++||++.+... .+. ++++|.+++. .++++.++
T Consensus 81 i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~~g~e~--------------------G~~~v~~~~~~~~~~l~~~~~- 139 (237)
T PRK09065 81 LRQAAAAGMPLLGICYGHQLLAHALGGEVGYNPAGRES--------------------GTVTVELHPAAADDPLFAGLP- 139 (237)
T ss_pred HHHHHHCCCCEEEEChhHHHHHHHcCCccccCCCCCcc--------------------ceEEEEEccccccChhhhcCC-
Confidence 8999999999999999999999999999886531 222 3577877653 34555443
Q ss_pred cccccceEEEEecccchhhcccCCCeEEEEEcCCCcEEEEEeCCCCCCCCCCcEEEEcccCCccC
Q 017539 193 SLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMR 257 (369)
Q Consensus 193 ~~~~~~~~~~vns~H~~~V~~L~~g~~vlA~s~dg~Veaie~~~~~~~~~~~~i~GvQFHPE~~~ 257 (369)
..+.++++|++.|.+||++++++|+++++.|+|++++ .+++|+|||||++.
T Consensus 140 ------~~~~v~~~H~d~v~~lp~~~~~la~s~~~~iqa~~~~--------~~i~gvQfHPE~~~ 190 (237)
T PRK09065 140 ------AQFPAHLTHLQSVLRLPPGAVVLARSAQDPHQAFRYG--------PHAWGVQFHPEFTA 190 (237)
T ss_pred ------ccCcEeeehhhhhhhCCCCCEEEEcCCCCCeeEEEeC--------CCEEEEEeCCcCCH
Confidence 3578899999999999999999999999999999987 46999999999764
No 39
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=99.93 E-value=4.8e-25 Score=234.68 Aligned_cols=193 Identities=22% Similarity=0.228 Sum_probs=143.0
Q ss_pred CCcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCC
Q 017539 9 ILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLS 88 (369)
Q Consensus 9 ~~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~ 88 (369)
..++|+||...+.+ .....+++++.|+.+.+++.....+. .+ ...+|||||+||++ +|.. .
T Consensus 515 ~~~~IlVID~gds~--------~~~l~~~L~~~G~~v~vv~~~~~~~~-~~-~~~~DgLILsgGPG-sp~d--~------ 575 (717)
T TIGR01815 515 EGRRILLVDHEDSF--------VHTLANYLRQTGASVTTLRHSHAEAA-FD-ERRPDLVVLSPGPG-RPAD--F------ 575 (717)
T ss_pred CCCEEEEEECCChh--------HHHHHHHHHHCCCeEEEEECCCChhh-hh-hcCCCEEEEcCCCC-Cchh--c------
Confidence 34688888765332 23577889999999999886644322 22 13699999999975 2311 0
Q ss_pred hhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeeccc
Q 017539 89 PEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDY 168 (369)
Q Consensus 89 ~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~~ 168 (369)
.+..+++++++.++|+||||+|||+|+.++||++.+... +|.
T Consensus 576 -----------------------~~~~~I~~~~~~~iPvLGICLG~QlLa~a~GG~V~~~~~-------------p~~-- 617 (717)
T TIGR01815 576 -----------------------DVAGTIDAALARGLPVFGVCLGLQGMVEAFGGALDVLPE-------------PVH-- 617 (717)
T ss_pred -----------------------ccHHHHHHHHHCCCCEEEECHHHHHHhhhhCCEEEECCC-------------Cee--
Confidence 123577888889999999999999999999999987531 222
Q ss_pred CCCCCceeEEEEcCCCcchhhhhccccccceEEEEecccchhh--cccCCCeEEEEEcCCCcEEEEEeCCCCCCCCCCcE
Q 017539 169 DNYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGV--KRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFI 246 (369)
Q Consensus 169 ~~~~~~~~~V~i~~~s~L~~~~~~~~~~~~~~~~vns~H~~~V--~~L~~g~~vlA~s~dg~Veaie~~~~~~~~~~~~i 246 (369)
|.+++|.+..+++++..++ ..+.++.||++.+ ..+|++++++|++++|.++||++++ .++
T Consensus 618 ----G~~~~V~~~~~~~Lf~~lp-------~~~~v~~~HS~~~~~~~LP~~~~vlA~s~d~~v~Ai~~~~-------~~i 679 (717)
T TIGR01815 618 ----GKASRIRVLGPDALFAGLP-------ERLTVGRYHSLFARRDRLPAELTVTAESADGLIMAIEHRR-------LPL 679 (717)
T ss_pred ----CcceEEEECCCChhhhcCC-------CCCEEEEECCCCcccccCCCCeEEEEEeCCCcEEEEEECC-------CCE
Confidence 2246677766667777664 3578889999876 5689999999999999999999985 689
Q ss_pred EEEcccCCccCCCCCCCCCCCCchHHHHHHHHHHH
Q 017539 247 MGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVI 281 (369)
Q Consensus 247 ~GvQFHPE~~~~~~~~~~~~~~~~~lf~~Fv~a~~ 281 (369)
+|+|||||+..+..+. ...+++++|+..+.
T Consensus 680 ~GVQFHPEsi~T~sg~-----~G~~ilkNfl~~~~ 709 (717)
T TIGR01815 680 AAVQFHPESIMTLDGG-----AGLAMIGNVVDRLA 709 (717)
T ss_pred EEEEeCCeeCCccCch-----hHHHHHHHHHHHHh
Confidence 9999999996554321 13689999998774
No 40
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=99.93 E-value=1.9e-25 Score=202.44 Aligned_cols=177 Identities=27% Similarity=0.408 Sum_probs=131.5
Q ss_pred hhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhh
Q 017539 31 GEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKD 110 (369)
Q Consensus 31 ~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd 110 (369)
.....+++++.|..+.+++...+.+...+.+..+|||||+||+. ++ |+ -
T Consensus 10 ~~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~d~iii~Gg~~-~~--~d----------------------------~ 58 (192)
T PF00117_consen 10 THSLVRALRELGIDVEVVRVDSDFEEPLEDLDDYDGIIISGGPG-SP--YD----------------------------I 58 (192)
T ss_dssp HHHHHHHHHHTTEEEEEEETTGGHHHHHHHTTTSSEEEEECESS-ST--TS----------------------------H
T ss_pred HHHHHHHHHHCCCeEEEEECCCchhhhhhhhcCCCEEEECCcCC-cc--cc----------------------------c
Confidence 34577889999999999987764333322467899999999963 11 11 1
Q ss_pred HHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeecccCCCCCceeEEEEcCCCcchhhh
Q 017539 111 SIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKDTPLHDWF 190 (369)
Q Consensus 111 ~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~~~~~~V~i~~~s~L~~~~ 190 (369)
..+..+++++++.++|+||||+|||+|+.++||++.+... .++.+ ...++...+.++++...
T Consensus 59 ~~~~~~i~~~~~~~~PilGIC~G~Q~la~~~G~~v~~~~~------------~~~~g------~~~~~~~~~~~~~~~~~ 120 (192)
T PF00117_consen 59 EGLIELIREARERKIPILGICLGHQILAHALGGKVVPSPE------------KPHHG------GNIPISETPEDPLFYGL 120 (192)
T ss_dssp HHHHHHHHHHHHTTSEEEEETHHHHHHHHHTTHEEEEEES------------EEEEE------EEEEEEEEEEHGGGTTS
T ss_pred cccccccccccccceEEEEEeehhhhhHHhcCCccccccc------------ccccc------ccccccccccccccccc
Confidence 2346788999999999999999999999999999886421 12222 13444443333444444
Q ss_pred hccccccceEEEEecccchhhcc---cCCCeEEEEEcCCC-cEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCC
Q 017539 191 KDSLEEEKMEIWVNSYHHQGVKR---LAQRFVPMAFAPDG-LIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDY 266 (369)
Q Consensus 191 ~~~~~~~~~~~~vns~H~~~V~~---L~~g~~vlA~s~dg-~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~~~ 266 (369)
+ ..+.+..+|++.|.. +|++++++|++.++ .++++.+.+ .+++|+|||||.+.+..+
T Consensus 121 ~-------~~~~~~~~H~~~v~~~~~~p~~~~~la~s~~~~~~~~~~~~~-------~~i~g~QfHPE~~~~~~~----- 181 (192)
T PF00117_consen 121 P-------ESFKAYQYHSDAVNPDDLLPEGFEVLASSSDGCPIQAIRHKD-------NPIYGVQFHPEFSSSPGG----- 181 (192)
T ss_dssp T-------SEEEEEEEECEEEEEGHHHHTTEEEEEEETTTTEEEEEEECT-------TSEEEESSBTTSTTSTTH-----
T ss_pred c-------cccccccccceeeecccccccccccccccccccccccccccc-------cEEEEEecCCcCCCCCCc-----
Confidence 2 467888999999998 99999999999776 899999985 579999999999988764
Q ss_pred CCchHHHHHHHH
Q 017539 267 PGCPSAYQEFVK 278 (369)
Q Consensus 267 ~~~~~lf~~Fv~ 278 (369)
..++++|+-
T Consensus 182 ---~~~l~nf~~ 190 (192)
T PF00117_consen 182 ---PQLLKNFFL 190 (192)
T ss_dssp ---HHHHHHHHH
T ss_pred ---chhhhheeE
Confidence 467777754
No 41
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=99.93 E-value=7.8e-25 Score=218.59 Aligned_cols=155 Identities=28% Similarity=0.398 Sum_probs=119.2
Q ss_pred HHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhHH
Q 017539 33 YHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSI 112 (369)
Q Consensus 33 ~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~ 112 (369)
..+++|.+.|+.++++|++.+.+++... .+|||||+|||+ ||..+. .
T Consensus 253 nIlr~L~~~G~~v~VvP~~~~~~ei~~~--~pDGIiLSnGPG-DP~~~~------------------------------~ 299 (415)
T PLN02771 253 NILRRLASYGCKITVVPSTWPASEALKM--KPDGVLFSNGPG-DPSAVP------------------------------Y 299 (415)
T ss_pred HHHHHHHHcCCeEEEECCCCCHHHHhhc--CCCEEEEcCCCC-ChhHhh------------------------------H
Confidence 4788999999999999998876666533 699999999985 442210 1
Q ss_pred HHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeecccCCCCCceeEEEEcCCCcchhhhhc
Q 017539 113 ELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKDTPLHDWFKD 192 (369)
Q Consensus 113 e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~~~~~~V~i~~~s~L~~~~~~ 192 (369)
....+++++ .++|+||||+|||+|+.++||++++.. +| |. |.+|+|......
T Consensus 300 ~ie~ik~l~-~~iPIlGICLGhQlLa~AlGGkv~K~~---~G----------h~------G~n~pV~~~~~~-------- 351 (415)
T PLN02771 300 AVETVKELL-GKVPVFGICMGHQLLGQALGGKTFKMK---FG----------HH------GGNHPVRNNRTG-------- 351 (415)
T ss_pred HHHHHHHHH-hCCCEEEEcHHHHHHHHhcCCeEEECC---CC----------cc------cceEEEEECCCC--------
Confidence 123445544 479999999999999999999999863 32 11 446787654321
Q ss_pred cccccceEEEEecccchhh--cccCCCeEEEEEc-CCCcEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCC
Q 017539 193 SLEEEKMEIWVNSYHHQGV--KRLAQRFVPMAFA-PDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDS 261 (369)
Q Consensus 193 ~~~~~~~~~~vns~H~~~V--~~L~~g~~vlA~s-~dg~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~ 261 (369)
..+.++++|+++| ++||+++++++++ +||.|||+++++ .+++|||||||....+..
T Consensus 352 ------~v~itsqnHg~aVd~~sLp~~~~vt~~nlnDgtvegi~~~~-------~pi~gVQFHPEa~pgp~D 410 (415)
T PLN02771 352 ------RVEISAQNHNYAVDPASLPEGVEVTHVNLNDGSCAGLAFPA-------LNVMSLQYHPEASPGPHD 410 (415)
T ss_pred ------CEEEEecCHHHhhccccCCCceEEEEEeCCCCcEEEEEECC-------CCEEEEEcCCCCCCCCCc
Confidence 2345778999999 5799999999997 799999999996 799999999999877654
No 42
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.93 E-value=3.1e-25 Score=229.91 Aligned_cols=186 Identities=20% Similarity=0.244 Sum_probs=133.5
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCC----hhhhhhhcCCCCEEEECCCCCCCCCCccccCCC
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSG----VHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSN 86 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~----~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~ 86 (369)
.+|+|+++.++++++ .++.++..|+.+.+++.+.. .+.+.. .++|+|||+|||+ +|. +...
T Consensus 2 ~~iLiIDn~dsft~n--------l~~~lr~~g~~v~V~~~~~~~~~~~~~l~~--~~~~~IIlSpGPg-~p~--d~~~-- 66 (531)
T PRK09522 2 ADILLLDNIDSFTYN--------LADQLRSNGHNVVIYRNHIPAQTLIERLAT--MSNPVLMLSPGPG-VPS--EAGC-- 66 (531)
T ss_pred CeEEEEeCCChHHHH--------HHHHHHHCCCCEEEEECCCCCccCHHHHHh--cCcCEEEEcCCCC-Chh--hCCC--
Confidence 478999999876444 45557778998888876533 222221 1478999999986 341 1100
Q ss_pred CChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeec
Q 017539 87 LSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHI 166 (369)
Q Consensus 87 ~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~ 166 (369)
...++++ +..++||||||+|||+|+.++||++.+..... |
T Consensus 67 --------------------------~~~i~~~-~~~~iPILGIClG~QlLa~a~GG~V~~~~~~~------------~- 106 (531)
T PRK09522 67 --------------------------MPELLTR-LRGKLPIIGICLGHQAIVEAYGGYVGQAGEIL------------H- 106 (531)
T ss_pred --------------------------CHHHHHH-HhcCCCEEEEcHHHHHHHHhcCCEEEeCCcee------------e-
Confidence 0123332 34589999999999999999999998753211 2
Q ss_pred ccCCCCCceeEEEEcCCCcchhhhhccccccceEEEEecccchhhcccCCCeEEEEEcCCCcEEEEEeCCCCCCCCCCcE
Q 017539 167 DYDNYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFI 246 (369)
Q Consensus 167 ~~~~~~~~~~~V~i~~~s~L~~~~~~~~~~~~~~~~vns~H~~~V~~L~~g~~vlA~s~dg~Veaie~~~~~~~~~~~~i 246 (369)
+....+.. .+..++..++ ..+.+++||++.|.++|++++++|+ .|+.++++++++ .++
T Consensus 107 ------G~~~~i~~-~~~~lf~~~~-------~~~~v~~~Hs~~v~~lP~~l~vlA~-sd~~v~ai~~~~-------~~i 164 (531)
T PRK09522 107 ------GKASSIEH-DGQAMFAGLT-------NPLPVARYHSLVGSNIPAGLTINAH-FNGMVMAVRHDA-------DRV 164 (531)
T ss_pred ------eeEEEEee-cCCccccCCC-------CCcEEEEehheecccCCCCcEEEEe-cCCCEEEEEECC-------CCE
Confidence 11233332 2344554443 3578999999999999999999997 588999999975 789
Q ss_pred EEEcccCCccCCCCCCCCCCCCchHHHHHHHHHHH
Q 017539 247 MGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVI 281 (369)
Q Consensus 247 ~GvQFHPE~~~~~~~~~~~~~~~~~lf~~Fv~a~~ 281 (369)
||+|||||+..++.| ..++++|++.|.
T Consensus 165 ~GVQFHPEs~~T~~G--------~~il~NFl~~~~ 191 (531)
T PRK09522 165 CGFQFHPESILTTQG--------ARLLEQTLAWAQ 191 (531)
T ss_pred EEEEecCccccCcch--------HHHHHHHHHHHh
Confidence 999999999999877 589999999876
No 43
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=99.93 E-value=6.5e-25 Score=236.65 Aligned_cols=199 Identities=23% Similarity=0.387 Sum_probs=144.9
Q ss_pred EEEEecCcccCcCcccccchhHHHHHHHHC-CCEEEEEcCCC-Chhhhhhh---cCCCCEEEECCCCCCCCCCccccCCC
Q 017539 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGY-GAVPAIVPRVS-GVHMLLDS---FEPIHGVLLCEGEDIDPSLYEAETSN 86 (369)
Q Consensus 12 ~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~-Ga~~vivp~~~-~~~~l~~~---l~~~DGlll~GG~didp~~y~~~~~~ 86 (369)
+|++|+++++++++++++ |... |+.|++++.+. +.+.+... +..+|||||+|||+ +|..-
T Consensus 83 ~iLlIDnyDSfTyNL~~~--------L~~~~g~~~~Vv~nd~~~~~~~~~~~~~~~~~d~IVlSPGPG-~P~~~------ 147 (918)
T PLN02889 83 RTLLIDNYDSYTYNIYQE--------LSIVNGVPPVVVRNDEWTWEEVYHYLYEEKAFDNIVISPGPG-SPTCP------ 147 (918)
T ss_pred eEEEEeCCCchHHHHHHH--------HHHhcCCCEEEEeCCCCCHHHHHhhhhcccCCCEEEECCCCC-Cccch------
Confidence 799999999887776655 4444 88988888763 44444321 34689999999985 34210
Q ss_pred CChhHHHHHHhhcCCCCccCchhh-HHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceee
Q 017539 87 LSPEELEEIRRLHTSDTAIDKEKD-SIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVH 165 (369)
Q Consensus 87 ~~~~~~~~i~~~~~~~~~~~~~rd-~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H 165 (369)
.| .+...++..+ .++||||||+|||+|+.++||++.+....+ |
T Consensus 148 ----------------------~d~Gi~~~~i~~~--~~iPILGICLGhQ~i~~~~Gg~V~~~~~~~------------H 191 (918)
T PLN02889 148 ----------------------ADIGICLRLLLEC--RDIPILGVCLGHQALGYVHGARIVHAPEPV------------H 191 (918)
T ss_pred ----------------------HHHHHHHHHHHHh--CCCcEEEEcHHHHHHHHhcCceEEeCCCce------------e
Confidence 11 1223444432 479999999999999999999998764322 2
Q ss_pred cccCCCCCceeEEEEcCCCcchhhhhccccccceEEEEecccchhhc--ccCCCeEEEEEcCC-----------------
Q 017539 166 IDYDNYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVK--RLAQRFVPMAFAPD----------------- 226 (369)
Q Consensus 166 ~~~~~~~~~~~~V~i~~~s~L~~~~~~~~~~~~~~~~vns~H~~~V~--~L~~g~~vlA~s~d----------------- 226 (369)
|....|.. .++.+|..++.. ....|.|..||+..|+ .||++++++||+.+
T Consensus 192 -------G~~s~I~h-~~~~lF~glp~~---~~~~f~v~RYHSL~v~~~~lP~~L~~~A~t~~~~~~~~~~~~~~~~~~~ 260 (918)
T PLN02889 192 -------GRLSEIEH-NGCRLFDDIPSG---RNSGFKVVRYHSLVIDAESLPKELVPIAWTSSSDTLSFLESQKSGLVPD 260 (918)
T ss_pred -------eeeeeEee-cCchhhcCCCcC---CCCCceEEeCCCcccccCCCCCceEEEEEECCCcccccccccccccccc
Confidence 22445554 355677666420 0125899999999995 59999999999865
Q ss_pred ------------------------------------CcEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCCch
Q 017539 227 ------------------------------------GLIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCP 270 (369)
Q Consensus 227 ------------------------------------g~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~~~~~~~ 270 (369)
+.|+|++|++ .|+||||||||...++.+ .
T Consensus 261 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viMairH~~-------~P~~GVQfHPESi~t~~G--------~ 325 (918)
T PLN02889 261 AYESQIGQSGSSDPFSSKLKNGTSWPSSHSERMQNGKILMGIMHST-------RPHYGLQFHPESIATCYG--------R 325 (918)
T ss_pred cccccccccccccccccccccccccccccccccCCCCeeEEEEECC-------CceEEEEeCCccccCchh--------H
Confidence 6899999996 899999999999988665 5
Q ss_pred HHHHHHHHHHHHHHHhh
Q 017539 271 SAYQEFVKAVIAYQKKL 287 (369)
Q Consensus 271 ~lf~~Fv~a~~~~~~~~ 287 (369)
.||++|+++|..|.++.
T Consensus 326 ~l~~nF~~~~~~~~~~~ 342 (918)
T PLN02889 326 QIFKNFREITQDYWLRL 342 (918)
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 99999999999886543
No 44
>PRK07567 glutamine amidotransferase; Provisional
Probab=99.92 E-value=1.5e-24 Score=204.58 Aligned_cols=171 Identities=19% Similarity=0.180 Sum_probs=117.8
Q ss_pred hHHHHHHHHCCCE---EEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCch
Q 017539 32 EYHLDLIVGYGAV---PAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKE 108 (369)
Q Consensus 32 ~~~l~~l~~~Ga~---~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 108 (369)
..|.++++..|.. ...+..... +.....++.+|||||+||+. +.|+.... +..|+.++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dgvIi~Gg~~---~~~d~~~~-----~~pw~~~~---------- 78 (242)
T PRK07567 18 AEYAAFLRYTGLDPAELRRIRLDRE-PLPDLDLDDYSGVIVGGSPF---NVSDPAES-----KSPWQRRV---------- 78 (242)
T ss_pred chHHHHHHhcCCCccceEEEecccC-CCCCCCHhhccEEEEcCCCC---cCCCCCCc-----cchHHHHH----------
Confidence 6678888888865 333332222 11111345799999999973 22433100 01133211
Q ss_pred hhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeecccCCCCCceeEEEEcCCC---c
Q 017539 109 KDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKDT---P 185 (369)
Q Consensus 109 rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~~~~~~V~i~~~s---~ 185 (369)
......+++.+.+.++|+||||+|||+|+.++||++.+....++ ++++|.+.+.. +
T Consensus 79 -~~~i~~~i~~~~~~~~PvLGIC~G~Qlla~a~GG~V~~~~g~e~--------------------G~~~v~l~~~g~~~~ 137 (242)
T PRK07567 79 -EAELSGLLDEVVARDFPFLGACYGVGTLGHHQGGVVDRTYGEPV--------------------GAVTVSLTDAGRADP 137 (242)
T ss_pred -HHHHHHHHHHHHhcCCCEEEEchhHHHHHHHcCCEEecCCCCcC--------------------ccEEEEECCccCCCh
Confidence 11224577778899999999999999999999999986322232 25677776533 3
Q ss_pred chhhhhccccccceEEEEecccchhhcccCCCeEEEEEcCCCcEEEEEeCCCCCCCCCCcEEEEcccCCccC
Q 017539 186 LHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMR 257 (369)
Q Consensus 186 L~~~~~~~~~~~~~~~~vns~H~~~V~~L~~g~~vlA~s~dg~Veaie~~~~~~~~~~~~i~GvQFHPE~~~ 257 (369)
++..++ ..+.+..+|++.|.+||++++++|+++++.++|++.+ .+++|+|||||.+.
T Consensus 138 l~~~~~-------~~~~~~~~H~d~V~~lp~~~~vlA~s~~~~vqa~~~~--------~~~~gvQfHPE~~~ 194 (242)
T PRK07567 138 LLAGLP-------DTFTAFVGHKEAVSALPPGAVLLATSPTCPVQMFRVG--------ENVYATQFHPELDA 194 (242)
T ss_pred hhcCCC-------CceEEEeehhhhhhhCCCCCEEEEeCCCCCEEEEEeC--------CCEEEEEeCCcCCH
Confidence 444332 3578888999999999999999999999999999986 46999999999875
No 45
>PRK05665 amidotransferase; Provisional
Probab=99.92 E-value=5.4e-24 Score=200.59 Aligned_cols=138 Identities=17% Similarity=0.160 Sum_probs=107.1
Q ss_pred hcCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHH
Q 017539 60 SFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNV 139 (369)
Q Consensus 60 ~l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~ 139 (369)
.++.+||||++||+. +.|++.+ ||++ +.++|+.+.++++|+||||+|||+|+.
T Consensus 54 ~~~~~dgiiitGs~~---~v~~~~p---------wi~~---------------l~~~i~~~~~~~~PilGIC~GhQlla~ 106 (240)
T PRK05665 54 DDEKFDAYLVTGSKA---DSFGTDP---------WIQT---------------LKTYLLKLYERGDKLLGVCFGHQLLAL 106 (240)
T ss_pred CcccCCEEEECCCCC---Cccccch---------HHHH---------------HHHHHHHHHhcCCCEEEEeHHHHHHHH
Confidence 456799999999973 3354433 4432 357888889999999999999999999
Q ss_pred HhCCeeeeccchhhhccCCCCcceeecccCCCCCceeEEEEcCCCcchhhhhccccccceEEEEecccchhhcccCCCeE
Q 017539 140 ACGGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFV 219 (369)
Q Consensus 140 a~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~~~~~~V~i~~~s~L~~~~~~~~~~~~~~~~vns~H~~~V~~L~~g~~ 219 (369)
++||++.+... |. ..+.+.+.+.+..+++.... ..+.++.+|++.|.+||++++
T Consensus 107 AlGG~V~~~~~---G~----------------e~G~~~~~~~~~~~~~~~~~-------~~~~~~~~H~D~V~~LP~ga~ 160 (240)
T PRK05665 107 LLGGKAERASQ---GW----------------GVGIHRYQLAAHAPWMSPAV-------TELTLLISHQDQVTALPEGAT 160 (240)
T ss_pred HhCCEEEeCCC---Cc----------------ccceEEEEecCCCccccCCC-------CceEEEEEcCCeeeeCCCCcE
Confidence 99999987532 10 01245666666555554442 467888999999999999999
Q ss_pred EEEEcCCCcEEEEEeCCCCCCCCCCcEEEEcccCCccCC
Q 017539 220 PMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMRR 258 (369)
Q Consensus 220 vlA~s~dg~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~ 258 (369)
++|+++++.+++++.+ .++||+|||||.+..
T Consensus 161 ~La~s~~~~~q~~~~~--------~~~~g~QfHPE~~~~ 191 (240)
T PRK05665 161 VIASSDFCPFAAYHIG--------DQVLCFQGHPEFVHD 191 (240)
T ss_pred EEEeCCCCcEEEEEeC--------CCEEEEecCCcCcHH
Confidence 9999999999999986 579999999998763
No 46
>PRK06490 glutamine amidotransferase; Provisional
Probab=99.92 E-value=1.2e-23 Score=198.08 Aligned_cols=179 Identities=24% Similarity=0.225 Sum_probs=125.1
Q ss_pred CCCcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCC
Q 017539 8 VILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNL 87 (369)
Q Consensus 8 ~~~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~ 87 (369)
..+++|+|+-.... . ....+.++++..|..+.++....+. .+.+.++.+||+||+||+. +.|++.+
T Consensus 5 ~~~~~vlvi~h~~~------~-~~g~l~~~l~~~g~~~~v~~~~~~~-~~p~~l~~~dgvii~Ggp~---~~~d~~~--- 70 (239)
T PRK06490 5 RDKRPVLIVLHQER------S-TPGRVGQLLQERGYPLDIRRPRLGD-PLPDTLEDHAGAVIFGGPM---SANDPDD--- 70 (239)
T ss_pred CCCceEEEEecCCC------C-CChHHHHHHHHCCCceEEEeccCCC-CCCCcccccCEEEEECCCC---CCCCCch---
Confidence 34567888755431 1 1223577788999988877543221 2333456899999999973 2333322
Q ss_pred ChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeecc
Q 017539 88 SPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHID 167 (369)
Q Consensus 88 ~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~ 167 (369)
|+ ..+..+|+.+++.++|+||||+|||+|+.++||++.+..... .+
T Consensus 71 ------wi---------------~~~~~~i~~~~~~~~PvLGIC~G~Qlla~alGG~V~~~~~G~-----------~e-- 116 (239)
T PRK06490 71 ------FI---------------RREIDWISVPLKENKPFLGICLGAQMLARHLGARVAPHPDGR-----------VE-- 116 (239)
T ss_pred ------HH---------------HHHHHHHHHHHHCCCCEEEECHhHHHHHHHcCCEeecCCCCC-----------Cc--
Confidence 22 124578899999999999999999999999999998753210 12
Q ss_pred cCCCCCceeEEEEcCCCcchhhhhccccccceEEEEecccchhhcccCCCeEEEEEcCCCcEEEEEeCCCCCCCCCCcEE
Q 017539 168 YDNYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIM 247 (369)
Q Consensus 168 ~~~~~~~~~~V~i~~~s~L~~~~~~~~~~~~~~~~vns~H~~~V~~L~~g~~vlA~s~dg~Veaie~~~~~~~~~~~~i~ 247 (369)
.+++++++.+.+++...+ ...+..+|++. ..||++++++|+++++.+++|+.+ .++|
T Consensus 117 -----~G~~~i~~~~~~~~~~~~---------~~~~~~~H~d~-~~lP~~~~~LA~s~~~~~qa~~~~--------~~v~ 173 (239)
T PRK06490 117 -----IGYYPLRPTEAGRALMHW---------PEMVYHWHREG-FDLPAGAELLATGDDFPNQAFRYG--------DNAW 173 (239)
T ss_pred -----cceEEeEECCCcccccCC---------CCEEEEECCcc-ccCCCCCEEEEeCCCCCeEEEEeC--------CCEE
Confidence 135778777655443222 12366789998 569999999999999999999986 4699
Q ss_pred EEcccCCccC
Q 017539 248 GLQFHPERMR 257 (369)
Q Consensus 248 GvQFHPE~~~ 257 (369)
|+|||||.+.
T Consensus 174 g~QfHPE~~~ 183 (239)
T PRK06490 174 GLQFHPEVTR 183 (239)
T ss_pred EEeeCccCCH
Confidence 9999999863
No 47
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=99.91 E-value=6e-24 Score=211.99 Aligned_cols=156 Identities=25% Similarity=0.350 Sum_probs=121.6
Q ss_pred HHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeee--cc-chhhhccCCCCcceeecccCC---------CCCceeEEEEc
Q 017539 114 LRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQ--DI-EKEVSRKCPENQRVVHIDYDN---------YDGHRHVVKVV 181 (369)
Q Consensus 114 ~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~--~~-~~e~g~~~~~~~~v~H~~~~~---------~~~~~~~V~i~ 181 (369)
+.++++|+++++|+||||+|||++.+.+..++.. +. ..|+++. +..+|..+...+ +..+..++.+.
T Consensus 362 I~Ai~yAREn~iP~lGIClGmQ~aviE~ARnv~Gl~~AnS~Efdp~--t~~pVv~l~~eq~~~~~lGGTmRLG~y~~~l~ 439 (533)
T COG0504 362 IAAIRYARENNIPFLGICLGMQLAVIEFARNVLGLEGANSTEFDPD--TKYPVVDLMPEQKDVVDLGGTMRLGAYPCRLK 439 (533)
T ss_pred HHHHHHHHhcCCCEEEEchhHHHHHHHHHHHhcCCccCcccccCCC--CCCceEEeccccccCCcCCceeeccceeeecC
Confidence 5889999999999999999999999988776442 22 2454421 333444432221 33367899999
Q ss_pred CCCcchhhhhcccccc--ceEEEEecccchhhcccCCCeEEEEEcCCC-cEEEEEeCCCCCCCCCCcEEEEcccCCccCC
Q 017539 182 KDTPLHDWFKDSLEEE--KMEIWVNSYHHQGVKRLAQRFVPMAFAPDG-LIEGFYDPDAYNPAEGKFIMGLQFHPERMRR 258 (369)
Q Consensus 182 ~~s~L~~~~~~~~~~~--~~~~~vns~H~~~V~~L~~g~~vlA~s~dg-~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~ 258 (369)
++|.++++|+.+.+.+ +++|++|.-....+.. .|+++.++++|| .+|++|.++ |+|++|+|||||+.++
T Consensus 440 ~gT~a~~lY~~~~v~ERHRHRYEvN~~y~~~le~--~Gl~~sg~s~d~~lvEivE~~~------hpfFv~~QfHPEf~Sr 511 (533)
T COG0504 440 PGTLAAKLYGKDEIYERHRHRYEVNNDYRDQLEK--AGLVFSGTSPDGGLVEIVELPD------HPFFVATQFHPEFKSR 511 (533)
T ss_pred CCcHHHHHhCCCeeeeeccchhhcCHHHHHHHHh--CCeEEEEEcCCCCeEEEEEcCC------CceEEEEcccccccCC
Confidence 9999999998755554 4778888766666655 789999999986 999999997 6999999999999999
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHh
Q 017539 259 PDSDEFDYPGCPSAYQEFVKAVIAYQKK 286 (369)
Q Consensus 259 ~~~~~~~~~~~~~lf~~Fv~a~~~~~~~ 286 (369)
+..++ ++|..|++++.+++++
T Consensus 512 P~~ph-------Plf~~fv~Aa~~~~~~ 532 (533)
T COG0504 512 PLRPH-------PLFVGFVKAALEYKKD 532 (533)
T ss_pred CCCCC-------ccHHHHHHHHHHhhcc
Confidence 98874 9999999999987653
No 48
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=99.91 E-value=2.1e-23 Score=223.58 Aligned_cols=200 Identities=18% Similarity=0.193 Sum_probs=135.9
Q ss_pred CCcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCC
Q 017539 9 ILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLS 88 (369)
Q Consensus 9 ~~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~ 88 (369)
.+.+|+|+++.++++++.+++ ++.+...++.+++++++.....+...+..+|||||+|||+ +|.. .
T Consensus 4 ~~~~iL~ID~~DSft~nl~~~-----l~~~~g~~~~v~vv~~d~~~~~~~~~l~~~D~VVIspGPG-~p~~--~------ 69 (742)
T TIGR01823 4 QRLHVLFIDSYDSFTYNVVRL-----LEQQTDISVHVTTVHSDTFQDQLLELLPLFDAIVVGPGPG-NPNN--A------ 69 (742)
T ss_pred CCceEEEEeCCcchHHHHHHH-----HHHhcCCCcEEEEEeCCCCchhhhhhhcCCCEEEECCCCC-Cccc--h------
Confidence 356999999998877776543 3333223466778887643333333456799999999985 3411 0
Q ss_pred hhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHc----CCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCccee
Q 017539 89 PEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLER----NIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVV 164 (369)
Q Consensus 89 ~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~----~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~ 164 (369)
-+..+++.+++. ++||||||+|||+|+.++||++.+....+.
T Consensus 70 -----------------------~~~~i~~~i~~~~~~~~iPvLGIClG~QlLa~a~GG~v~~~~~~~h----------- 115 (742)
T TIGR01823 70 -----------------------QDMGIISELWELANLDEVPVLGICLGFQSLCLAQGADISRLPTPKH----------- 115 (742)
T ss_pred -----------------------hhhHHHHHHHHhcccCCCcEEEEchhhHHHHhhcCCEEEECCCCCc-----------
Confidence 012344455543 599999999999999999999987532222
Q ss_pred ecccCCCCCceeEEEEcCCCcchhhhhccccccceEEEEecccchhhcc-cCCC--eEEEEEcCCC-cEEEEEeCCCCCC
Q 017539 165 HIDYDNYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKR-LAQR--FVPMAFAPDG-LIEGFYDPDAYNP 240 (369)
Q Consensus 165 H~~~~~~~~~~~~V~i~~~s~L~~~~~~~~~~~~~~~~vns~H~~~V~~-L~~g--~~vlA~s~dg-~Veaie~~~~~~~ 240 (369)
|..+.|... +..++..+. .+.++.||++.+.. .++. +.+++.+.++ .++|+++++
T Consensus 116 --------G~~~~v~~~-~~~lf~gl~--------~~~v~~~Hs~~v~~~~~~~l~~~~~a~~~~~~~i~ai~h~~---- 174 (742)
T TIGR01823 116 --------GQVYEMHTN-DAAIFCGLF--------SVKSTRYHSLYANPEGIDTLLPLCLTEDEEGIILMSAQTKK---- 174 (742)
T ss_pred --------CeEEEEEEC-CccccCCCC--------CCceeEEEEEEccCCCCCcceEEEEEEcCCCCeEEEEEEcC----
Confidence 224556553 334544442 26788999998854 3444 4566666554 899999996
Q ss_pred CCCCcEEEEcccCCccCCCCCCCCCCCCchHHHHHHHHHHHHHHHhh
Q 017539 241 AEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVIAYQKKL 287 (369)
Q Consensus 241 ~~~~~i~GvQFHPE~~~~~~~~~~~~~~~~~lf~~Fv~a~~~~~~~~ 287 (369)
.|+||||||||+..++.+ ..+||++|++++..++++.
T Consensus 175 ---~pi~GVQFHPE~~~s~~g-------~~~Lf~nFl~~~~~~~~~~ 211 (742)
T TIGR01823 175 ---KPWFGVQYHPESCCSELG-------SGKLVSNFLKLAFINNVKT 211 (742)
T ss_pred ---CceEEEEeCcccCCCCcc-------HHHHHHHHHHHHHHhhhhc
Confidence 789999999999776543 2689999999999887543
No 49
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=99.91 E-value=1.6e-23 Score=189.00 Aligned_cols=193 Identities=22% Similarity=0.322 Sum_probs=128.8
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCCh
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSP 89 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~ 89 (369)
+++|+|++--. +++. +-.+++++.|+.+++.. +++.+. ..|+|||||-+. |++..
T Consensus 1 m~~i~IIDyg~---GNL~-----Sv~~Aler~G~~~~vs~---d~~~i~----~AD~liLPGVGa-----f~~am----- 55 (204)
T COG0118 1 MMMVAIIDYGS---GNLR-----SVKKALERLGAEVVVSR---DPEEIL----KADKLILPGVGA-----FGAAM----- 55 (204)
T ss_pred CCEEEEEEcCc---chHH-----HHHHHHHHcCCeeEEec---CHHHHh----hCCEEEecCCCC-----HHHHH-----
Confidence 35778875432 1221 34678999999999864 555544 699999999543 22221
Q ss_pred hHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHh---CCe----eeeccchhhhccCCCC-c
Q 017539 90 EELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVAC---GGT----LYQDIEKEVSRKCPEN-Q 161 (369)
Q Consensus 90 ~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~---GG~----l~~~~~~e~g~~~~~~-~ 161 (369)
+.+++ ....+.++.+.+.++|+||||+|||+|.... ++. +.+. ..- +++.. .
T Consensus 56 ---~~L~~-------------~gl~~~i~~~~~~~kP~LGIClGMQlLfe~SeE~~~~~GLg~i~G---~V~-r~~~~~~ 115 (204)
T COG0118 56 ---ANLRE-------------RGLIEAIKEAVESGKPFLGICLGMQLLFERSEEGGGVKGLGLIPG---KVV-RFPAEDL 115 (204)
T ss_pred ---HHHHh-------------cchHHHHHHHHhcCCCEEEEeHhHHhhhhcccccCCCCCcceecc---eEE-EcCCCCC
Confidence 12221 1224677777778899999999999998742 221 1111 111 13322 6
Q ss_pred ceeecccCCCCCceeEEEEcCCCcchhhhhccccccceEEEEecccchhhcccCCCeEEEEEcCCC--cEEEEEeCCCCC
Q 017539 162 RVVHIDYDNYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDG--LIEGFYDPDAYN 239 (369)
Q Consensus 162 ~v~H~~~~~~~~~~~~V~i~~~s~L~~~~~~~~~~~~~~~~vns~H~~~V~~L~~g~~vlA~s~dg--~Veaie~~~~~~ 239 (369)
++|||+|+ .+.+.++++|++.+++ +...|+|+||+-... +.-.++++++.| +..++..
T Consensus 116 kvPHMGWN-------~l~~~~~~~l~~gi~~----~~~~YFVHSY~~~~~----~~~~v~~~~~YG~~f~AaV~k----- 175 (204)
T COG0118 116 KVPHMGWN-------QVEFVRGHPLFKGIPD----GAYFYFVHSYYVPPG----NPETVVATTDYGEPFPAAVAK----- 175 (204)
T ss_pred CCCccccc-------eeeccCCChhhcCCCC----CCEEEEEEEEeecCC----CCceEEEeccCCCeeEEEEEe-----
Confidence 89999985 4555577889888753 357899999886652 334567878777 5556654
Q ss_pred CCCCCcEEEEcccCCccCCCCCCCCCCCCchHHHHHHHHHH
Q 017539 240 PAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAV 280 (369)
Q Consensus 240 ~~~~~~i~GvQFHPE~~~~~~~~~~~~~~~~~lf~~Fv~a~ 280 (369)
.+++|+|||||++...+ .+++++|++.+
T Consensus 176 ----~N~~g~QFHPEKSg~~G---------l~lL~NFl~~~ 203 (204)
T COG0118 176 ----DNVFGTQFHPEKSGKAG---------LKLLKNFLEWI 203 (204)
T ss_pred ----CCEEEEecCcccchHHH---------HHHHHHHHhhc
Confidence 46999999999998754 58999999863
No 50
>PLN02327 CTP synthase
Probab=99.91 E-value=2.3e-23 Score=213.34 Aligned_cols=175 Identities=21% Similarity=0.297 Sum_probs=124.5
Q ss_pred hhhcCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHH
Q 017539 58 LDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVL 137 (369)
Q Consensus 58 ~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL 137 (369)
.+.++.+|||++|||++ ++.. ......++++++.++|+||||+|||++
T Consensus 357 ~~~L~~~DGIvvpGGfG-~~~~-------------------------------~G~i~ai~~are~~iP~LGIClGmQl~ 404 (557)
T PLN02327 357 WKLLKGADGILVPGGFG-DRGV-------------------------------EGKILAAKYARENKVPYLGICLGMQIA 404 (557)
T ss_pred HHhhccCCEEEeCCCCC-Cccc-------------------------------ccHHHHHHHHHHcCCCEEEEcHHHHHH
Confidence 35678999999999963 1110 012457899999999999999999999
Q ss_pred HHHhCCeeee--cc-chhhhccCCCCcceeecc----cCC----CCCceeEEEEc-CCCcchhhhhccccccceEEEEec
Q 017539 138 NVACGGTLYQ--DI-EKEVSRKCPENQRVVHID----YDN----YDGHRHVVKVV-KDTPLHDWFKDSLEEEKMEIWVNS 205 (369)
Q Consensus 138 ~~a~GG~l~~--~~-~~e~g~~~~~~~~v~H~~----~~~----~~~~~~~V~i~-~~s~L~~~~~~~~~~~~~~~~vns 205 (369)
++++|+++.. +. +.|+.+. +..++.... ... +..+.+++.+. ++|.++++|++ ...+|+
T Consensus 405 viefaRnvlG~~dAnS~Efdp~--t~~pvI~~m~e~~~~~~GGtMRLG~~~~~~~~~~S~l~~iYg~-------~~~Vne 475 (557)
T PLN02327 405 VIEFARSVLGLKDANSTEFDPE--TPNPCVIFMPEGSKTHMGGTMRLGSRRTYFQTPDCKSAKLYGN-------VSFVDE 475 (557)
T ss_pred HHHHHHhhcCCcCCCccccCCC--CCCCEEEEehhcccccCCceEECCCcccccCCCCCHHHHHhCC-------ccceee
Confidence 9999998653 33 3555432 122232211 111 11234566665 88999999974 124667
Q ss_pred ccc-------hhhccc-CCCeEEEEEcCCC-cEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCCchHHHHHH
Q 017539 206 YHH-------QGVKRL-AQRFVPMAFAPDG-LIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEF 276 (369)
Q Consensus 206 ~H~-------~~V~~L-~~g~~vlA~s~dg-~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~~~~~~~~lf~~F 276 (369)
.|+ +.++.| ..+++++|+++|| .||++|+++ +++++|+|||||+.+.+..+ .++|..|
T Consensus 476 rHrHRYeVN~q~v~~le~~gL~vsa~s~dg~~IEaiE~~~------~pffvGVQfHPE~~s~p~~~-------~pLF~~F 542 (557)
T PLN02327 476 RHRHRYEVNPEMVPRLEKAGLSFVGKDETGRRMEIVELPS------HPFFVGVQFHPEFKSRPGKP-------SPLFLGL 542 (557)
T ss_pred eeccccccCHHHHHHHhhcCcEEEEEcCCCCEEEEEEeCC------CCEEEEEEcCCCCCCCCCCc-------hHHHHHH
Confidence 776 666667 6899999999988 899999986 46778999999998876543 5899999
Q ss_pred HHHHHHHHHh
Q 017539 277 VKAVIAYQKK 286 (369)
Q Consensus 277 v~a~~~~~~~ 286 (369)
+++|.+..++
T Consensus 543 v~Aa~~~~~~ 552 (557)
T PLN02327 543 IAAASGQLDA 552 (557)
T ss_pred HHHHHHhHHh
Confidence 9999875443
No 51
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.90 E-value=4.9e-23 Score=187.47 Aligned_cols=188 Identities=18% Similarity=0.201 Sum_probs=121.8
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCCh
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSP 89 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~ 89 (369)
+++|+|+..... + .+++++++.+|+.++.++. .+. ++.+|||||+||++ +.++...
T Consensus 1 ~m~~~i~~~~g~----~-----~~~~~~l~~~g~~~~~~~~---~~~----l~~~dgiii~GG~~---~~~~~~~----- 56 (189)
T PRK13525 1 MMKIGVLALQGA----V-----REHLAALEALGAEAVEVRR---PED----LDEIDGLILPGGES---TTMGKLL----- 56 (189)
T ss_pred CCEEEEEEcccC----H-----HHHHHHHHHCCCEEEEeCC---hhH----hccCCEEEECCCCh---HHHHHHH-----
Confidence 357888876632 1 1456789999999999873 222 45799999999953 1111100
Q ss_pred hHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeecccC
Q 017539 90 EELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYD 169 (369)
Q Consensus 90 ~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~~~ 169 (369)
++.-...+++.+.++++|+||||.|+|+|+.++||.... .+|- ++ ..+....+
T Consensus 57 -------------------~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~~gg~~~~----~lg~-~~--~~v~~~~~- 109 (189)
T PRK13525 57 -------------------RDFGLLEPLREFIASGLPVFGTCAGMILLAKEIEGYEQE----HLGL-LD--ITVRRNAF- 109 (189)
T ss_pred -------------------HhccHHHHHHHHHHCCCeEEEECHHHHHHHhhcccCCCC----ceee-EE--EEEEEccC-
Confidence 001124678888899999999999999999999885111 1110 00 00000000
Q ss_pred CCCCceeEEEEcCCCcchhhhhccccccceEEEEecccchhhcccCCCeEEEEEcCCCcEEEEEeCCCCCCCCCCcEEEE
Q 017539 170 NYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGL 249 (369)
Q Consensus 170 ~~~~~~~~V~i~~~s~L~~~~~~~~~~~~~~~~vns~H~~~V~~L~~g~~vlA~s~dg~Veaie~~~~~~~~~~~~i~Gv 249 (369)
+ +. +.....+.++..++ ..+.++.+|++.|.++|++++++|+++ +.+++++. .++||+
T Consensus 110 ---g-~~-~g~~~~~~~~~~~~-------~~~~~~~~H~d~v~~lp~~~~vlA~~~-~~~~~~~~---------~~~~g~ 167 (189)
T PRK13525 110 ---G-RQ-VDSFEAELDIKGLG-------EPFPAVFIRAPYIEEVGPGVEVLATVG-GRIVAVRQ---------GNILAT 167 (189)
T ss_pred ---C-Cc-eeeEEecccccCCC-------CCeEEEEEeCceeeccCCCcEEEEEcC-CEEEEEEe---------CCEEEE
Confidence 0 00 00011122333332 257888999999999999999999986 45667764 469999
Q ss_pred cccCCccCCCCCCCCCCCCchHHHHHHHHHHH
Q 017539 250 QFHPERMRRPDSDEFDYPGCPSAYQEFVKAVI 281 (369)
Q Consensus 250 QFHPE~~~~~~~~~~~~~~~~~lf~~Fv~a~~ 281 (369)
|||||.+.. .+||++|++.|.
T Consensus 168 QfHPE~~~~-----------~~~~~~f~~~~~ 188 (189)
T PRK13525 168 SFHPELTDD-----------TRVHRYFLEMVK 188 (189)
T ss_pred EeCCccCCC-----------chHHHHHHHHhh
Confidence 999999753 389999999886
No 52
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=99.90 E-value=1.9e-23 Score=218.66 Aligned_cols=196 Identities=23% Similarity=0.377 Sum_probs=149.5
Q ss_pred hHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhH
Q 017539 32 EYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDS 111 (369)
Q Consensus 32 ~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~ 111 (369)
..-+|++.++||.+.++||+...+.. .+|||+|++||+ ||+.+..
T Consensus 184 ~N~IRcL~~RGa~vtVvPw~~~i~~~-----~yDGlflSNGPG-dPe~~~~----------------------------- 228 (1435)
T KOG0370|consen 184 YNQIRCLVKRGAEVTVVPWDYPIAKE-----EYDGLFLSNGPG-DPELCPL----------------------------- 228 (1435)
T ss_pred HHHHHHHHHhCceEEEecCCcccccc-----ccceEEEeCCCC-CchhhHH-----------------------------
Confidence 34789999999999999998865543 699999999987 6755322
Q ss_pred HHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeecccCCCCCceeEEEEcCCCcchhhhh
Q 017539 112 IELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKDTPLHDWFK 191 (369)
Q Consensus 112 ~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~~~~~~V~i~~~s~L~~~~~ 191 (369)
...-++..++.++|++|||+|||+|+.|.|++.++. .+|++ |+++|+.....
T Consensus 229 -~v~~vr~lL~~~~PvfGIClGHQllA~AaGakT~Km---KyGNR----------------GhNiP~~~~~t-------- 280 (1435)
T KOG0370|consen 229 -LVQNVRELLESNVPVFGICLGHQLLALAAGAKTYKM---KYGNR----------------GHNIPCTCRAT-------- 280 (1435)
T ss_pred -HHHHHHHHHhCCCCeEEEehhhHHHHHhhCCceEEe---ecccc----------------CCCccceeccC--------
Confidence 124556667778999999999999999999999987 55532 44667754322
Q ss_pred ccccccceEEEEecccchhhc--ccCCCeEEEEEc-CCCcEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCC
Q 017539 192 DSLEEEKMEIWVNSYHHQGVK--RLAQRFVPMAFA-PDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPG 268 (369)
Q Consensus 192 ~~~~~~~~~~~vns~H~~~V~--~L~~g~~vlA~s-~dg~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~~~~~ 268 (369)
.+++...++|+++|+ .||.+|+.+..+ +||..|++.|.. .|++.+|||||....+.+
T Consensus 281 ------Grc~ITSQNHGYAVD~~tLp~gWk~lFvN~NDgSNEGI~Hss-------~P~fSvQFHPEat~GP~D------- 340 (1435)
T KOG0370|consen 281 ------GRCFITSQNHGYAVDPATLPAGWKPLFVNANDGSNEGIMHSS-------KPFFSVQFHPEATPGPHD------- 340 (1435)
T ss_pred ------ceEEEEecCCceeeccccccCCCchheeecccCCCceEecCC-------CCceeeecCCcCCCCCcc-------
Confidence 246777889999996 499999999998 889999999985 799999999999887755
Q ss_pred chHHHHHHHHHHHHHHHhhccccCCCCCCCcchhhhhhhhhhh
Q 017539 269 CPSAYQEFVKAVIAYQKKLNIATAVPKPLNLNKEMENKRRTIV 311 (369)
Q Consensus 269 ~~~lf~~Fv~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~ 311 (369)
+..+|+.|++..++++.....+..+.+..+.... ++.||+|+
T Consensus 341 TeyLFDiFi~lvkk~kst~tAs~~~t~~~~~~~~-~~~~kVlv 382 (1435)
T KOG0370|consen 341 TEYLFDVFIELVKKSKSTPTASAFITEPAKAAPR-VEVKKVLV 382 (1435)
T ss_pred hHHHHHHHHHHHHHHhcCCccccccccccccccc-ccccEEEE
Confidence 4789999999988877766655555333333333 33444443
No 53
>PRK08250 glutamine amidotransferase; Provisional
Probab=99.90 E-value=1.2e-22 Score=190.90 Aligned_cols=166 Identities=19% Similarity=0.230 Sum_probs=119.9
Q ss_pred hHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCC-ccccCCCCChhHHHHHHhhcCCCCccCchhh
Q 017539 32 EYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSL-YEAETSNLSPEELEEIRRLHTSDTAIDKEKD 110 (369)
Q Consensus 32 ~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~-y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd 110 (369)
..|-.+++.+|..+.++....+ +.+...++.+||||++||+. ++.. +++.+ |+ +.
T Consensus 15 g~~~~~~~~~g~~~~~~~~~~g-~~~p~~~~~~d~vii~GGp~-~~~~~~~~~p---------~~----------~~--- 70 (235)
T PRK08250 15 GAYLKWAENRGYDISYSRVYAG-EALPENADGFDLLIVMGGPQ-SPRTTREECP---------YF----------DS--- 70 (235)
T ss_pred hHHHHHHHHCCCeEEEEEccCC-CCCCCCccccCEEEECCCCC-Chhhcccccc---------cc----------ch---
Confidence 3467778889987776554332 23333456799999999973 2211 11111 11 00
Q ss_pred HHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeecccCCCCCceeEEEEcCCC---cch
Q 017539 111 SIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKDT---PLH 187 (369)
Q Consensus 111 ~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~~~~~~V~i~~~s---~L~ 187 (369)
..+..+++.+++.++|+||||+|+|+|+.++||++.+....++| +++|.+++.. +++
T Consensus 71 ~~~~~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~~~e~G--------------------~~~v~lt~~g~~d~l~ 130 (235)
T PRK08250 71 KAEQRLINQAIKAGKAVIGVCLGAQLIGEALGAKYEHSPEKEIG--------------------YFPITLTEAGLKDPLL 130 (235)
T ss_pred HHHHHHHHHHHHcCCCEEEEChhHHHHHHHhCceeccCCCCcee--------------------EEEEEEccccccCchh
Confidence 12457889999999999999999999999999999875433443 5678776543 355
Q ss_pred hhhhccccccceEEEEecccchhhcccCCCeEEEEEcCCCcEEEEEeCCCCCCCCCCcEEEEcccCCccC
Q 017539 188 DWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMR 257 (369)
Q Consensus 188 ~~~~~~~~~~~~~~~vns~H~~~V~~L~~g~~vlA~s~dg~Veaie~~~~~~~~~~~~i~GvQFHPE~~~ 257 (369)
..++ ..+.+.++|++.+ .||++++++|+++.+.++++... .++||+|||||.+.
T Consensus 131 ~~~~-------~~~~v~~~H~d~~-~lP~~a~~LA~s~~~~~qa~~~~--------~~~~g~QfHPE~~~ 184 (235)
T PRK08250 131 SHFG-------STLTVGHWHNDMP-GLTDQAKVLATSEGCPRQIVQYS--------NLVYGFQCHMEFTV 184 (235)
T ss_pred hcCC-------CCcEEEEEeccee-cCCCCCEEEECCCCCCceEEEeC--------CCEEEEeecCcCCH
Confidence 5553 3577889999976 59999999999999999999986 46999999999764
No 54
>PRK07053 glutamine amidotransferase; Provisional
Probab=99.90 E-value=5.4e-23 Score=193.17 Aligned_cols=161 Identities=21% Similarity=0.258 Sum_probs=117.2
Q ss_pred HHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhHHH
Q 017539 34 HLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIE 113 (369)
Q Consensus 34 ~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e 113 (369)
..++++..|..+.+++...+. .....+..+||||++||+. +.|++...+ |+ .-+
T Consensus 19 i~~~L~~~g~~~~v~~~~~~~-~~~~~~~~~d~lii~Ggp~---~~~d~~~~p-------~~---------------~~~ 72 (234)
T PRK07053 19 FEQVLGARGYRVRYVDVGVDD-LETLDALEPDLLVVLGGPI---GVYDDELYP-------FL---------------APE 72 (234)
T ss_pred HHHHHHHCCCeEEEEecCCCc-cCCCCccCCCEEEECCCCC---CCCCCCcCC-------cH---------------HHH
Confidence 577889999988887754321 1122345799999999962 345443221 11 124
Q ss_pred HHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeecccCCCCCceeEEEEcCCC---cchhhh
Q 017539 114 LRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKDT---PLHDWF 190 (369)
Q Consensus 114 ~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~~~~~~V~i~~~s---~L~~~~ 190 (369)
..+++.+++.++|+||||+|+|+|+.++||++.+....|+| +.+|.+++.. ++.. +
T Consensus 73 ~~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~~~e~G--------------------~~~i~~t~~g~~~pl~~-~ 131 (234)
T PRK07053 73 IALLRQRLAAGLPTLGICLGAQLIARALGARVYPGGQKEIG--------------------WAPLTLTDAGRASPLRH-L 131 (234)
T ss_pred HHHHHHHHHCCCCEEEECccHHHHHHHcCCcEecCCCCeEe--------------------EEEEEEeccccCChhhc-C
Confidence 57889999999999999999999999999999874323333 5677766532 2321 2
Q ss_pred hccccccceEEEEecccchhhcccCCCeEEEEEcCCCcEEEEEeCCCCCCCCCCcEEEEcccCCccC
Q 017539 191 KDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMR 257 (369)
Q Consensus 191 ~~~~~~~~~~~~vns~H~~~V~~L~~g~~vlA~s~dg~Veaie~~~~~~~~~~~~i~GvQFHPE~~~ 257 (369)
+ ..+.+..+|++.+ .||++++++|+++++.+++++.. .++||+|||||.+.
T Consensus 132 ~-------~~~~~~~~H~d~~-~lP~ga~~La~s~~~~~qaf~~g--------~~~~g~QfHpE~~~ 182 (234)
T PRK07053 132 G-------AGTPVLHWHGDTF-DLPEGATLLASTPACRHQAFAWG--------NHVLALQFHPEARE 182 (234)
T ss_pred C-------CcceEEEEeCCEE-ecCCCCEEEEcCCCCCeeEEEeC--------CCEEEEeeCccCCH
Confidence 1 2467778999988 59999999999999999999985 57999999999875
No 55
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.88 E-value=4.4e-22 Score=182.73 Aligned_cols=179 Identities=20% Similarity=0.267 Sum_probs=113.2
Q ss_pred HHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhHH
Q 017539 33 YHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSI 112 (369)
Q Consensus 33 ~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~ 112 (369)
+..+++++.|+.++++.. ++++ +.+|+||||||.+.++ ....+++ -.+
T Consensus 14 ~v~~~l~~~g~~~~~~~~---~~~l----~~~d~lilPG~g~~~~-------------~~~~l~~------------~~~ 61 (201)
T PRK13152 14 SVAKAFEKIGAINFIAKN---PKDL----QKADKLLLPGVGSFKE-------------AMKNLKE------------LGF 61 (201)
T ss_pred HHHHHHHHCCCeEEEECC---HHHH----cCCCEEEECCCCchHH-------------HHHHHHH------------cCc
Confidence 356788889998887753 3333 4699999999864211 0111111 012
Q ss_pred HHHHHHHHHHcCCCEEEEeHHHHHHHHH-hCCeeeeccc---hhhhccCC--CCcceeecccCCCCCceeEEEEcCCCcc
Q 017539 113 ELRLAKLCLERNIPYLGICRGSQVLNVA-CGGTLYQDIE---KEVSRKCP--ENQRVVHIDYDNYDGHRHVVKVVKDTPL 186 (369)
Q Consensus 113 e~~li~~~~e~~iPiLGIClG~QlL~~a-~GG~l~~~~~---~e~g~~~~--~~~~v~H~~~~~~~~~~~~V~i~~~s~L 186 (369)
+..+.+.+++.++|+||||+|||+|+++ .++...++.. .+..+ +. ...+++|+ ++++|++.+++++
T Consensus 62 ~~~l~~~~~~~~~pvlGiC~G~Q~l~~~~~~~~~~~~lg~~~g~v~~-~~~~~~~~~~~~-------g~~~v~~~~~~~l 133 (201)
T PRK13152 62 IEALKEQVLVQKKPILGICLGMQLFLERGYEGGVCEGLGFIEGEVVK-FEEDLNLKIPHM-------GWNELEILKQSPL 133 (201)
T ss_pred HHHHHHHHHhCCCcEEEECHhHHHHhhcccccCCcCCcccccEEEEE-CCCCCCCcCCcc-------CeEEEEECCCChh
Confidence 3456666778899999999999999997 2333344331 11100 00 01124454 4688988888988
Q ss_pred hhhhhccccccceEEEEecccchhhcccCCCeEEEEEcCCC--cEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCC
Q 017539 187 HDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDG--LIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEF 264 (369)
Q Consensus 187 ~~~~~~~~~~~~~~~~vns~H~~~V~~L~~g~~vlA~s~dg--~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~ 264 (369)
++.+++ .-..++++|+|.+.+ + ..+.++++++ .+++++. .+++|+|||||++.. .+
T Consensus 134 ~~~l~~----~~~~~~vHS~~v~~~---~--~~v~a~~~~g~~~~~a~~~---------~~i~GvQFHPE~~~~-~g--- 191 (201)
T PRK13152 134 YQGIPE----KSDFYFVHSFYVKCK---D--EFVSAKAQYGHKFVASLQK---------DNIFATQFHPEKSQN-LG--- 191 (201)
T ss_pred hhCCCC----CCeEEEEcccEeecC---C--CcEEEEECCCCEEEEEEec---------CCEEEEeCCCeecCh-hh---
Confidence 888753 113455666665543 2 4577888777 6667763 469999999998743 32
Q ss_pred CCCCchHHHHHHHH
Q 017539 265 DYPGCPSAYQEFVK 278 (369)
Q Consensus 265 ~~~~~~~lf~~Fv~ 278 (369)
..+|++|++
T Consensus 192 -----~~ll~~Fl~ 200 (201)
T PRK13152 192 -----LKLLENFAR 200 (201)
T ss_pred -----HHHHHHHHh
Confidence 589999986
No 56
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.88 E-value=2.8e-22 Score=184.34 Aligned_cols=178 Identities=21% Similarity=0.241 Sum_probs=119.4
Q ss_pred hHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhH
Q 017539 32 EYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDS 111 (369)
Q Consensus 32 ~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~ 111 (369)
..+.+.+++.|+.+.++.. .++ ++.+||||||||...++ .+.++. ..+
T Consensus 13 ~~i~~~l~~~G~~v~~~~~---~~~----l~~~d~iiipG~~~~~~-------------~~~~~~-----------~~~- 60 (205)
T PRK13141 13 RSVEKALERLGAEAVITSD---PEE----ILAADGVILPGVGAFPD-------------AMANLR-----------ERG- 60 (205)
T ss_pred HHHHHHHHHCCCeEEEECC---HHH----hccCCEEEECCCCchHH-------------HHHHHH-----------HcC-
Confidence 3467889999999988752 233 34799999998742111 000100 001
Q ss_pred HHHHHHHHHHHcCCCEEEEeHHHHHHHHHh------------CCeeeeccchhhhccCCCCcceeecccCCCCCceeEEE
Q 017539 112 IELRLAKLCLERNIPYLGICRGSQVLNVAC------------GGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVK 179 (369)
Q Consensus 112 ~e~~li~~~~e~~iPiLGIClG~QlL~~a~------------GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~~~~~~V~ 179 (369)
...+++.+.+.++|+||||+|+|+|+.++ ||++.+... + ....++|.+ ++.+.
T Consensus 61 -~~~~i~~~~~~~~pvlGIC~G~Qll~~~~~~~~~~~~lg~l~g~v~~~~~---~----~~~~~~~~g-------~~~i~ 125 (205)
T PRK13141 61 -LDEVIKEAVASGKPLLGICLGMQLLFESSEEFGETEGLGLLPGRVRRFPP---E----EGLKVPHMG-------WNQLE 125 (205)
T ss_pred -hHHHHHHHHHCCCcEEEECHHHHHhhhccccCCCCCccceEEEEEEEcCC---C----CCCcccEec-------Cccce
Confidence 14677888889999999999999999973 344332210 0 011234433 46777
Q ss_pred EcCCCcchhhhhccccccceEEEEecccchhhcccCCCeEEEEEcCCC-cEEEEEeCCCCCCCCCCcEEEEcccCCccCC
Q 017539 180 VVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDG-LIEGFYDPDAYNPAEGKFIMGLQFHPERMRR 258 (369)
Q Consensus 180 i~~~s~L~~~~~~~~~~~~~~~~vns~H~~~V~~L~~g~~vlA~s~dg-~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~ 258 (369)
+.+++++++.++. .+.+..+|++.+. +++++.++|+++++ .++++... .++||+|||||+...
T Consensus 126 ~~~~~~l~~~l~~-------~~~v~~~Hs~~v~-~~~~~~v~a~~~~~~~~~a~~~~--------~~i~GvQfHPE~~~~ 189 (205)
T PRK13141 126 LKKESPLLKGIPD-------GAYVYFVHSYYAD-PCDEEYVAATTDYGVEFPAAVGK--------DNVFGAQFHPEKSGD 189 (205)
T ss_pred eCCCChhhhCCCC-------CCEEEEECeeEec-cCCcCeEEEEEeCCcEEEEEEec--------CCEEEEeCCCccchH
Confidence 7778888887752 3444456777664 67788999998877 78888654 589999999998753
Q ss_pred CCCCCCCCCCchHHHHHHHHHHH
Q 017539 259 PDSDEFDYPGCPSAYQEFVKAVI 281 (369)
Q Consensus 259 ~~~~~~~~~~~~~lf~~Fv~a~~ 281 (369)
. ..++|++|++.|+
T Consensus 190 -~--------g~~l~~~fl~~~~ 203 (205)
T PRK13141 190 -V--------GLKILKNFVEMVE 203 (205)
T ss_pred -H--------HHHHHHHHHHHhh
Confidence 2 2589999999874
No 57
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.87 E-value=5.6e-21 Score=175.34 Aligned_cols=193 Identities=21% Similarity=0.239 Sum_probs=120.9
Q ss_pred EEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhH
Q 017539 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEE 91 (369)
Q Consensus 12 ~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~ 91 (369)
+|+|+...+. .+ ..+.++++.+|+.+++++ ..+. ++.+|||+|+||.+ |.+ +
T Consensus 2 ~~~v~~~~~~-------~~-~~~~~~l~~~G~~~~~~~---~~~~----~~~~d~iii~G~~~-----~~~--------~ 53 (200)
T PRK13143 2 MIVIIDYGVG-------NL-RSVSKALERAGAEVVITS---DPEE----ILDADGIVLPGVGA-----FGA--------A 53 (200)
T ss_pred eEEEEECCCc-------cH-HHHHHHHHHCCCeEEEEC---CHHH----HccCCEEEECCCCC-----HHH--------H
Confidence 5667655432 22 467899999999999885 2222 35799999998642 111 1
Q ss_pred HHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHh-CCeeeeccchhhhcc---CCCCcceeecc
Q 017539 92 LEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVAC-GGTLYQDIEKEVSRK---CPENQRVVHID 167 (369)
Q Consensus 92 ~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~-GG~l~~~~~~e~g~~---~~~~~~v~H~~ 167 (369)
+++++ -....++.++++++|+||||+|+|+|+.++ +|+..+++. -++.. .+....++|.
T Consensus 54 ~~~~~---------------~~~~~i~~~~~~~~PilgIC~G~q~l~~~~~~g~~~~~lg-~~~g~v~~~~~~~~~~~~- 116 (200)
T PRK13143 54 MENLS---------------PLRDVILEAARSGKPFLGICLGMQLLFESSEEGGGVRGLG-LFPGRVVRFPAGVKVPHM- 116 (200)
T ss_pred HHHHH---------------HHHHHHHHHHHcCCCEEEECHHHHHHhhhhccCCCCCCcc-eeeEEEEEcCCCCCCCee-
Confidence 22221 124677888999999999999999999763 444443320 01100 0001112232
Q ss_pred cCCCCCceeEEEEcCCCcchhhhhccccccceEEEEecccchhhcccCCCeEEEEEcCCC-cEEEEEeCCCCCCCCCCcE
Q 017539 168 YDNYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDG-LIEGFYDPDAYNPAEGKFI 246 (369)
Q Consensus 168 ~~~~~~~~~~V~i~~~s~L~~~~~~~~~~~~~~~~vns~H~~~V~~L~~g~~vlA~s~dg-~Veaie~~~~~~~~~~~~i 246 (369)
+++.+.+..++++++.+. +. .+..+|.+.+. +++++.++|+++++ .++++... .++
T Consensus 117 ------g~~~v~~~~~~~l~~~l~-----~~---~~~~~Hs~~~~-~~~~~~~la~~~~~~~~~~~~~~--------~~~ 173 (200)
T PRK13143 117 ------GWNTVKVVKDCPLFEGID-----GE---YVYFVHSYYAY-PDDEDYVVATTDYGIEFPAAVCN--------DNV 173 (200)
T ss_pred ------cceEEEEcCCChhhccCC-----Cc---EEEEEeeeeeC-CCCcceEEEEEcCCCEEEEEEEc--------CCE
Confidence 356777777777775553 11 23335555553 55678999999887 44555443 589
Q ss_pred EEEcccCCccCCCCCCCCCCCCchHHHHHHHHHHH
Q 017539 247 MGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVI 281 (369)
Q Consensus 247 ~GvQFHPE~~~~~~~~~~~~~~~~~lf~~Fv~a~~ 281 (369)
||+|||||++.. . ..++|++|++.++
T Consensus 174 ~gvQfHPE~~~~-~--------g~~i~~~f~~~~~ 199 (200)
T PRK13143 174 FGTQFHPEKSGE-T--------GLKILENFVELIK 199 (200)
T ss_pred EEEeCCCccchH-H--------HHHHHHHHHHHHh
Confidence 999999998742 2 2589999998763
No 58
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.87 E-value=4.3e-22 Score=184.01 Aligned_cols=190 Identities=18% Similarity=0.217 Sum_probs=125.5
Q ss_pred EEEEecCcccCcCcccccchhHHHHHHHHCCC--EEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCCh
Q 017539 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGA--VPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSP 89 (369)
Q Consensus 12 ~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga--~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~ 89 (369)
+|+|+....- .+ .++.+++++.|+ .+.++ .+++++ +.+|||||||++.. .
T Consensus 3 ~~~iid~g~g-------n~-~s~~~al~~~g~~~~v~~~---~~~~~l----~~~d~lIlpG~~~~-----~-------- 54 (209)
T PRK13146 3 TVAIIDYGSG-------NL-RSAAKALERAGAGADVVVT---ADPDAV----AAADRVVLPGVGAF-----A-------- 54 (209)
T ss_pred eEEEEECCCC-------hH-HHHHHHHHHcCCCccEEEE---CCHHHh----cCCCEEEECCCCcH-----H--------
Confidence 6788765532 12 457889999998 44444 344443 57999999997421 1
Q ss_pred hHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHH------------hCCeeeeccchhhhccC
Q 017539 90 EELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVA------------CGGTLYQDIEKEVSRKC 157 (369)
Q Consensus 90 ~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a------------~GG~l~~~~~~e~g~~~ 157 (369)
+...+++.. .....+++.+.+.++|+||||+|||+|+.+ ++|++.+.. ..+
T Consensus 55 ~~~~~l~~~------------~~~~~~~~~~~~~~~PvlGiC~G~q~l~~~~~e~~~~~glg~l~g~v~~~~--~~~--- 117 (209)
T PRK13146 55 DCMRGLRAV------------GLGEAVIEAVLAAGRPFLGICVGMQLLFERGLEHGDTPGLGLIPGEVVRFQ--PDG--- 117 (209)
T ss_pred HHHHHHHHC------------CcHHHHHHHHHhCCCcEEEECHHHHHHhhcccccCCCCCcceEeEEEEEcC--CCC---
Confidence 111122110 122356666677899999999999999998 555554420 001
Q ss_pred CCCcceeecccCCCCCceeEEEEcCCCcchhhhhccccccceEEEEecccchhhcccCCCeEEEEEcCCC-cEEEEEeCC
Q 017539 158 PENQRVVHIDYDNYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDG-LIEGFYDPD 236 (369)
Q Consensus 158 ~~~~~v~H~~~~~~~~~~~~V~i~~~s~L~~~~~~~~~~~~~~~~vns~H~~~V~~L~~g~~vlA~s~dg-~Veaie~~~ 236 (369)
...+++|++| +.|++.+++++++.+++ .+.+..+|++.+..++ ...++|+++++ .++++..+
T Consensus 118 -~~~~~p~~G~-------~~v~~~~~~~lf~~~~~-------~~~v~~~Hs~~v~~~~-~~~~la~s~~~~~~~a~~~~- 180 (209)
T PRK13146 118 -PALKVPHMGW-------NTVDQTRDHPLFAGIPD-------GARFYFVHSYYAQPAN-PADVVAWTDYGGPFTAAVAR- 180 (209)
T ss_pred -CCCccCccCh-------HHeeeCCCChhccCCCC-------CCEEEEEeEEEEEcCC-CCcEEEEEcCCCEEEEEEec-
Confidence 1124567665 56777777778777642 4566778998887555 56889998876 56777654
Q ss_pred CCCCCCCCcEEEEcccCCccCCCCCCCCCCCCchHHHHHHHHH
Q 017539 237 AYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKA 279 (369)
Q Consensus 237 ~~~~~~~~~i~GvQFHPE~~~~~~~~~~~~~~~~~lf~~Fv~a 279 (369)
.++||+|||||.+.. .+ ..++++|++.
T Consensus 181 -------~~i~GvQFHPE~s~~-~G--------~~ll~nfl~~ 207 (209)
T PRK13146 181 -------DNLFATQFHPEKSQD-AG--------LALLRNFLAW 207 (209)
T ss_pred -------CCEEEEEcCCcccHH-HH--------HHHHHHHHhh
Confidence 689999999998743 33 5899999875
No 59
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=99.87 E-value=6.3e-22 Score=183.05 Aligned_cols=193 Identities=16% Similarity=0.242 Sum_probs=120.4
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChh
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPE 90 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~ 90 (369)
.+|+|+.-..- ++ .++.++++.+|+.+++++. .+++ +.+|+||+||+.+.++.
T Consensus 2 ~~v~iid~~~G---N~-----~sl~~al~~~g~~v~vv~~---~~~l----~~~d~iIlPG~g~~~~~------------ 54 (210)
T CHL00188 2 MKIGIIDYSMG---NL-----HSVSRAIQQAGQQPCIINS---ESEL----AQVHALVLPGVGSFDLA------------ 54 (210)
T ss_pred cEEEEEEcCCc---cH-----HHHHHHHHHcCCcEEEEcC---HHHh----hhCCEEEECCCCchHHH------------
Confidence 36888864421 11 3568889999999998863 2333 46999999996532210
Q ss_pred HHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeecc---chhhhccCC--CCcceee
Q 017539 91 ELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDI---EKEVSRKCP--ENQRVVH 165 (369)
Q Consensus 91 ~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~---~~e~g~~~~--~~~~v~H 165 (369)
+..+++ .-....++.+++.++|+||||+|||+|+...++...+.. ..+.. +++ ...+++|
T Consensus 55 -~~~l~~-------------~gl~~~i~~~~~~~~pvlGIClG~Qll~~~~~~~~~~glg~~~G~v~-~~~~~~~~~~p~ 119 (210)
T CHL00188 55 -MKKLEK-------------KGLITPIKKWIAEGNPFIGICLGLHLLFETSEEGKEEGLGIYKGQVK-RLKHSPVKVIPH 119 (210)
T ss_pred -HHHHHH-------------CCHHHHHHHHHHcCCCEEEECHHHHHHhhccccCCcCCccceeEEEE-ECCCCCCCccCc
Confidence 111211 112345677778899999999999999998655422211 11111 111 1237899
Q ss_pred cccCCCCCceeEEEEcCC------CcchhhhhccccccceEEEEecccchhhcccCCCeEEEEEc----CCCcEEEEEeC
Q 017539 166 IDYDNYDGHRHVVKVVKD------TPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFA----PDGLIEGFYDP 235 (369)
Q Consensus 166 ~~~~~~~~~~~~V~i~~~------s~L~~~~~~~~~~~~~~~~vns~H~~~V~~L~~g~~vlA~s----~dg~Veaie~~ 235 (369)
++|+ .|++..+ +.+++.++ ..+.+..+|++.+. |++...++.+ .++.+++++.
T Consensus 120 ~Gw~-------~v~~~~~~~~~~~~~lf~~l~-------~~~~v~~~HS~~v~--p~~~~~l~~t~~~~~~~~v~a~~~- 182 (210)
T CHL00188 120 MGWN-------RLECQNSECQNSEWVNWKAWP-------LNPWAYFVHSYGVM--PKSQACATTTTFYGKQQMVAAIEY- 182 (210)
T ss_pred cCCc-------cceecCCcccccCChhhcCCC-------CCCEEEEeCccEec--CCCCceEEEEEecCCcceEEEEec-
Confidence 9885 3444433 44666554 24566778988774 3344334333 3567999985
Q ss_pred CCCCCCCCCcEEEEcccCCccCCCCCCCCCCCCchHHHHHHHHH
Q 017539 236 DAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKA 279 (369)
Q Consensus 236 ~~~~~~~~~~i~GvQFHPE~~~~~~~~~~~~~~~~~lf~~Fv~a 279 (369)
.+++|+|||||++ ++.+ ..++++|++.
T Consensus 183 --------~~i~GvQFHPE~s-~~~G--------~~il~nfl~~ 209 (210)
T CHL00188 183 --------DNIFAMQFHPEKS-GEFG--------LWLLREFMKK 209 (210)
T ss_pred --------CCEEEEecCCccc-cHhH--------HHHHHHHHhh
Confidence 3699999999998 4444 5899999864
No 60
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.86 E-value=4.7e-21 Score=175.72 Aligned_cols=168 Identities=15% Similarity=0.134 Sum_probs=111.3
Q ss_pred HHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhHHH
Q 017539 34 HLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIE 113 (369)
Q Consensus 34 ~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e 113 (369)
+.++++..|..+.++... +.+ .+..+|||+|+||+. +.++... ++.-.
T Consensus 19 ~~~~l~~~g~~~~~~~~~-~~~----~l~~~d~iii~GG~~---~~~~~~~------------------------~~~~~ 66 (200)
T PRK13527 19 LKRALDELGIDGEVVEVR-RPG----DLPDCDALIIPGGES---TTIGRLM------------------------KREGI 66 (200)
T ss_pred HHHHHHhcCCCeEEEEeC-ChH----HhccCCEEEECCCcH---HHHHHHH------------------------hhccH
Confidence 456788889866665543 222 244799999999952 1111100 00112
Q ss_pred HHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeec-cchhhhccCCCCcceeecccCCCCCceeEEEEcC----------
Q 017539 114 LRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQD-IEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVK---------- 182 (369)
Q Consensus 114 ~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~-~~~e~g~~~~~~~~v~H~~~~~~~~~~~~V~i~~---------- 182 (369)
...++.+.+.++|+||||+|+|+|+.++||..... ...++| ..++++.+
T Consensus 67 ~~~i~~~~~~~~pilGIC~G~Qll~~~~gg~~v~~~~~~~lG--------------------~~~~~v~~~~~g~~~~~~ 126 (200)
T PRK13527 67 LDEIKEKIEEGLPILGTCAGLILLAKEVGDDRVTKTEQPLLG--------------------LMDVTVKRNAFGRQRDSF 126 (200)
T ss_pred HHHHHHHHHCCCeEEEECHHHHHHHhhhcCCccCCCCCceee--------------------eeEEEEeeccccCccccE
Confidence 56788888899999999999999999999843221 111222 12222211
Q ss_pred -CCcchhhhhccccccceEEEEecccchhhcccCCCeEEEEEcCCCcEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCC
Q 017539 183 -DTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDS 261 (369)
Q Consensus 183 -~s~L~~~~~~~~~~~~~~~~vns~H~~~V~~L~~g~~vlA~s~dg~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~ 261 (369)
...++..+ +..+.+..+|++.|..+|++++++|+++|+.+ +++. .++||+|||||.+..
T Consensus 127 ~~~~~~~~~-------~~~~~~~~~H~~~v~~lp~~~~~la~~~~~~~-a~~~---------~~~~g~QfHPE~~~~--- 186 (200)
T PRK13527 127 EAEIDLSGL-------DGPFHAVFIRAPAITKVGGDVEVLAKLDDRIV-AVEQ---------GNVLATAFHPELTDD--- 186 (200)
T ss_pred EEeEecccc-------CCcceEEEEccccccccCCCeEEEEEECCEEE-EEEE---------CCEEEEEeCCCCCCC---
Confidence 01122222 23577778999999999999999999998854 6654 469999999997753
Q ss_pred CCCCCCCchHHHHHHHHHHH
Q 017539 262 DEFDYPGCPSAYQEFVKAVI 281 (369)
Q Consensus 262 ~~~~~~~~~~lf~~Fv~a~~ 281 (369)
.++|++|++.++
T Consensus 187 --------~~l~~~f~~~~~ 198 (200)
T PRK13527 187 --------TRIHEYFLKKVK 198 (200)
T ss_pred --------CHHHHHHHHHHh
Confidence 389999999874
No 61
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.86 E-value=1.7e-21 Score=178.47 Aligned_cols=172 Identities=19% Similarity=0.206 Sum_probs=109.5
Q ss_pred HHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhHH
Q 017539 33 YHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSI 112 (369)
Q Consensus 33 ~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~ 112 (369)
.+.+++++.|+.++++. +.++ ++.+|+||+|||++.. . .+.++++ .-
T Consensus 14 ~~~~~l~~~g~~v~~~~---~~~~----l~~~d~lilpG~g~~~-----~--------~~~~l~~-------------~~ 60 (199)
T PRK13181 14 SVANALKRLGVEAVVSS---DPEE----IAGADKVILPGVGAFG-----Q--------AMRSLRE-------------SG 60 (199)
T ss_pred HHHHHHHHCCCcEEEEc---ChHH----hccCCEEEECCCCCHH-----H--------HHHHHHH-------------CC
Confidence 46778899999988873 3333 3469999999975311 0 0111110 01
Q ss_pred HHHHHHHHHHcCCCEEEEeHHHHHHHHH-----------hCCeeeeccchhhhccCCCCcceeecccCCCCCceeEEEEc
Q 017539 113 ELRLAKLCLERNIPYLGICRGSQVLNVA-----------CGGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVV 181 (369)
Q Consensus 113 e~~li~~~~e~~iPiLGIClG~QlL~~a-----------~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~~~~~~V~i~ 181 (369)
....++.+++.++|+||||+|+|+|+.+ +|+++.+.... ..+++|++ ++.+.+.
T Consensus 61 ~~~~i~~~~~~~~PvlGiC~G~Qll~~~~~~~~~~glg~l~~~v~~~~~~--------~~~~~~~G-------~~~v~~~ 125 (199)
T PRK13181 61 LDEALKEHVEKKQPVLGICLGMQLLFESSEEGNVKGLGLIPGDVKRFRSE--------PLKVPQMG-------WNSVKPL 125 (199)
T ss_pred hHHHHHHHHHCCCCEEEECHhHHHhhhhcccCCcCCcceEEEEEEEcCCC--------CCCCCccC-------ccccccC
Confidence 2356777778899999999999999999 34444432100 01223443 4667666
Q ss_pred CCCcchhhhhccccccceEEEEecccchhhcccCCCeEEEEEcCCC--cEEEEEeCCCCCCCCCCcEEEEcccCCccCCC
Q 017539 182 KDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDG--LIEGFYDPDAYNPAEGKFIMGLQFHPERMRRP 259 (369)
Q Consensus 182 ~~s~L~~~~~~~~~~~~~~~~vns~H~~~V~~L~~g~~vlA~s~dg--~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~ 259 (369)
+++++++.+++ .+.+..+|++.+..++. +.++|++++| .+++++. .++||+|||||++. +
T Consensus 126 ~~~~lf~~l~~-------~~~~~~~Hs~~v~~~~~-~~~lA~s~~~~~~~~~~~~---------~~i~GvQFHPE~~~-~ 187 (199)
T PRK13181 126 KESPLFKGIEE-------GSYFYFVHSYYVPCEDP-EDVLATTEYGVPFCSAVAK---------DNIYAVQFHPEKSG-K 187 (199)
T ss_pred CCChhHcCCCC-------CCEEEEeCeeEeccCCc-ccEEEEEcCCCEEEEEEEC---------CCEEEEECCCccCC-H
Confidence 77888887753 33445566666644443 4688998865 3344543 46999999999874 2
Q ss_pred CCCCCCCCCchHHHHHHHH
Q 017539 260 DSDEFDYPGCPSAYQEFVK 278 (369)
Q Consensus 260 ~~~~~~~~~~~~lf~~Fv~ 278 (369)
. ...++++|++
T Consensus 188 ~--------g~~ll~nfl~ 198 (199)
T PRK13181 188 A--------GLKLLKNFAE 198 (199)
T ss_pred H--------HHHHHHHHHh
Confidence 3 2589999975
No 62
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.86 E-value=7.3e-21 Score=174.14 Aligned_cols=175 Identities=19% Similarity=0.220 Sum_probs=110.2
Q ss_pred HHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhHHH
Q 017539 34 HLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIE 113 (369)
Q Consensus 34 ~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e 113 (369)
..++|++.|+.+.++. ++++ ++.+|+|||||+.. +. +...+++ +
T Consensus 16 ~~~~l~~~g~~~~~v~---~~~~----~~~~d~iIlPG~G~--~~-----------~~~~~l~----------------~ 59 (196)
T PRK13170 16 VKFAIERLGYEPVVSR---DPDV----ILAADKLFLPGVGT--AQ-----------AAMDQLR----------------E 59 (196)
T ss_pred HHHHHHHCCCeEEEEC---CHHH----hCCCCEEEECCCCc--hH-----------HHHHHHH----------------H
Confidence 4568888999999885 3333 34699999998532 10 0111111 1
Q ss_pred HHHHHHHHHcCCCEEEEeHHHHHHHHHhCCee-eeccc---hhhhccCC-CCcceeecccCCCCCceeEEEEcCCCcchh
Q 017539 114 LRLAKLCLERNIPYLGICRGSQVLNVACGGTL-YQDIE---KEVSRKCP-ENQRVVHIDYDNYDGHRHVVKVVKDTPLHD 188 (369)
Q Consensus 114 ~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l-~~~~~---~e~g~~~~-~~~~v~H~~~~~~~~~~~~V~i~~~s~L~~ 188 (369)
..+++.+.+.++|+||||+|||+|+.++++.. .+... ..... ++ ...+++|++| ++|++.+++++++
T Consensus 60 ~~l~~~i~~~~~PilGIClG~Qll~~~~~~~~~~~~lg~~~g~v~~-~~~~~~~~p~~G~-------~~v~~~~~~~l~~ 131 (196)
T PRK13170 60 RELIDLIKACTQPVLGICLGMQLLGERSEESGGVDCLGIIDGPVKK-MTDFGLPLPHMGW-------NQVTPQAGHPLFQ 131 (196)
T ss_pred cChHHHHHHcCCCEEEECHHHHHHhhhcccCCCCCCcccccEEEEE-CCCCCCCCCcccc-------ceeEeCCCChhhh
Confidence 23445555668999999999999999984422 11110 01100 11 1234567655 6787777777777
Q ss_pred hhhccccccceEEEEecccchhhcccCCCeEEEEEcCCCcEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCC
Q 017539 189 WFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPG 268 (369)
Q Consensus 189 ~~~~~~~~~~~~~~vns~H~~~V~~L~~g~~vlA~s~dg~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~~~~~ 268 (369)
.+++ .+.+..+|++. +|++..++|++++|...+..... .++||+|||||++.. .+
T Consensus 132 ~l~~-------~~~v~~~Hs~~---lp~~~~~la~s~~~~~~~~~~~~-------~~i~G~QFHPE~~~~-~G------- 186 (196)
T PRK13170 132 GIED-------GSYFYFVHSYA---MPVNEYTIAQCNYGEPFSAAIQK-------DNFFGVQFHPERSGA-AG------- 186 (196)
T ss_pred CCCc-------CCEEEEECeee---cCCCCcEEEEecCCCeEEEEEEc-------CCEEEEECCCCCccc-cc-------
Confidence 6642 45666788876 45667788998877433222322 569999999999853 44
Q ss_pred chHHHHHHHH
Q 017539 269 CPSAYQEFVK 278 (369)
Q Consensus 269 ~~~lf~~Fv~ 278 (369)
..++++|++
T Consensus 187 -~~~l~nfl~ 195 (196)
T PRK13170 187 -AQLLKNFLE 195 (196)
T ss_pred -HHHHHHHhh
Confidence 589999975
No 63
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.86 E-value=1.5e-21 Score=178.46 Aligned_cols=172 Identities=18% Similarity=0.224 Sum_probs=112.8
Q ss_pred HHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhHHH
Q 017539 34 HLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIE 113 (369)
Q Consensus 34 ~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e 113 (369)
..+++++.|+.+.+++. .+. ++.+|+|+||||+. + .+. ...+ ++.-.
T Consensus 14 ~~~~l~~~g~~v~v~~~---~~~----l~~~d~iiipG~~~--~---~~~--------~~~~-------------~~~~~ 60 (198)
T cd01748 14 VANALERLGAEVIITSD---PEE----ILSADKLILPGVGA--F---GDA--------MANL-------------RERGL 60 (198)
T ss_pred HHHHHHHCCCeEEEEcC---hHH----hccCCEEEECCCCc--H---HHH--------HHHH-------------HHcCh
Confidence 56889999999998873 222 34799999988642 1 110 0001 00112
Q ss_pred HHHHHHHHHcCCCEEEEeHHHHHHHHH------------hCCeeeeccchhhhccCCCCcceeecccCCCCCceeEEEEc
Q 017539 114 LRLAKLCLERNIPYLGICRGSQVLNVA------------CGGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVV 181 (369)
Q Consensus 114 ~~li~~~~e~~iPiLGIClG~QlL~~a------------~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~~~~~~V~i~ 181 (369)
...++.+.++++|+||||+|||+|+.+ ++|++.+.... ....++|++ ++.+.+.
T Consensus 61 ~~~i~~~~~~~~pilGiC~G~q~l~~~~~~g~~~~~lg~~~g~v~~~~~~-------~~~~~~~~G-------~~~v~~~ 126 (198)
T cd01748 61 IEALKEAIASGKPFLGICLGMQLLFESSEEGGGTKGLGLIPGKVVRFPAS-------EGLKVPHMG-------WNQLEIT 126 (198)
T ss_pred HHHHHHHHHCCCcEEEECHHHHHhccccccCCCCCCCCCcceEEEECCCC-------CCceEEEec-------cceEEEC
Confidence 467888888899999999999999998 44554432110 001234544 4567777
Q ss_pred CCCcchhhhhccccccceEEEEecccchhhcccCCCeEEEEEcCCCc-EEEEEeCCCCCCCCCCcEEEEcccCCccCCCC
Q 017539 182 KDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGL-IEGFYDPDAYNPAEGKFIMGLQFHPERMRRPD 260 (369)
Q Consensus 182 ~~s~L~~~~~~~~~~~~~~~~vns~H~~~V~~L~~g~~vlA~s~dg~-Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~ 260 (369)
+++++++.++ ..+.+..+|++.+.. ++.+.++|+++++. ++++... .++||+|||||.+.. .
T Consensus 127 ~~~~lf~~l~-------~~~~v~~~Hs~~v~~-~~~~~~la~s~~~~~~~~~~~~--------~~i~GvQFHPE~~~~-~ 189 (198)
T cd01748 127 KESPLFKGIP-------DGSYFYFVHSYYAPP-DDPDYILATTDYGGKFPAAVEK--------DNIFGTQFHPEKSGK-A 189 (198)
T ss_pred CCChhhhCCC-------CCCeEEEEeEEEEec-CCcceEEEEecCCCeEEEEEEc--------CCEEEEECCCccccH-h
Confidence 7777776664 245677889998874 44577899888764 4444432 689999999998853 3
Q ss_pred CCCCCCCCchHHHHHHH
Q 017539 261 SDEFDYPGCPSAYQEFV 277 (369)
Q Consensus 261 ~~~~~~~~~~~lf~~Fv 277 (369)
+ ..++++|+
T Consensus 190 g--------~~~~~nf~ 198 (198)
T cd01748 190 G--------LKLLKNFL 198 (198)
T ss_pred H--------HHHHHhhC
Confidence 2 57888884
No 64
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=99.86 E-value=2.9e-21 Score=190.23 Aligned_cols=162 Identities=23% Similarity=0.416 Sum_probs=126.4
Q ss_pred HHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhHHHH
Q 017539 35 LDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIEL 114 (369)
Q Consensus 35 l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~ 114 (369)
-|.+++.-....++|.+.....+.+. .+-||||+|||+ |+|+++...+.++
T Consensus 33 ~RrvRel~v~se~~p~~t~~~~i~~~--~~rgiIiSGGP~---SVya~dAP~~dp~------------------------ 83 (552)
T KOG1622|consen 33 DRRVRELNVQSEILPLTTPAKTITEY--GPRGIIISGGPN---SVYAEDAPSFDPA------------------------ 83 (552)
T ss_pred HHHHHHHhhhhhhccCCChhhhhhcC--CceEEEEeCCCC---ccccCcCCCCChh------------------------
Confidence 45667777777888988777777653 799999999974 7888866432111
Q ss_pred HHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeecccCCCCCceeEEEEcCCCcchhhhhccc
Q 017539 115 RLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKDTPLHDWFKDSL 194 (369)
Q Consensus 115 ~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~~~~~~V~i~~~s~L~~~~~~~~ 194 (369)
..+-++|+||||+|||+|+..+||++.+...+|+| ...|.+.....+|+.+.+
T Consensus 84 -----if~~~vpvLGICYGmQ~i~~~~Gg~V~~~~~RE~G--------------------~~eI~v~~~~~lF~~~~~-- 136 (552)
T KOG1622|consen 84 -----IFELGVPVLGICYGMQLINKLNGGTVVKGMVREDG--------------------EDEIEVDDSVDLFSGLHK-- 136 (552)
T ss_pred -----HhccCCcceeehhHHHHHHHHhCCccccccccCCC--------------------CceEEcCchhhhhhhhcc--
Confidence 12347999999999999999999999887666665 245666555666766642
Q ss_pred cccceEEEEecccchhhcccCCCeEEEEEcCCCcEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCC
Q 017539 195 EEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSD 262 (369)
Q Consensus 195 ~~~~~~~~vns~H~~~V~~L~~g~~vlA~s~dg~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~ 262 (369)
....+|+..|++.+.++|.+|+++|++.+..+.++.+.. +++||+|||||...++.+.
T Consensus 137 ---~~~~~VlltHgdsl~~v~~g~kv~a~s~n~~va~i~~e~-------kkiyglqfhpEV~~t~~g~ 194 (552)
T KOG1622|consen 137 ---TEFMTVLLTHGDSLSKVPEGFKVVAFSGNKPVAGILNEL-------KKIYGLQFHPEVTLTPNGK 194 (552)
T ss_pred ---cceeeeeeccccchhhccccceeEEeecCcceeeehhhh-------hhhhcCCCCCcccccCchh
Confidence 223368889999999999999999999998999999875 8999999999999988775
No 65
>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]
Probab=99.84 E-value=1.4e-20 Score=163.91 Aligned_cols=193 Identities=23% Similarity=0.383 Sum_probs=136.5
Q ss_pred CCcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCC-ChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCC
Q 017539 9 ILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS-GVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNL 87 (369)
Q Consensus 9 ~~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~-~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~ 87 (369)
++|+|.| +++++++.+..+|+ .-+.|+...+.+.+. +.+++... +.++++|+.||+ .|.
T Consensus 18 n~piv~I-DNYDSFT~Nv~qYL-------~~e~g~~~~VyRNDeiTV~El~~~--NP~~LliSPGPG-~P~--------- 77 (223)
T KOG0026|consen 18 NGPIIVI-DNYDSFTYNLCQYL-------MGELGCHFEVYRNDELTVEELKRK--NPRGLLISPGPG-TPQ--------- 77 (223)
T ss_pred cCCEEEE-ecccchhHHHHHHh-------hhccCccEEEEecCcccHHHHhhc--CCCeEEecCCCC-CCc---------
Confidence 4777766 88888777766653 234678777776653 45666654 799999999975 331
Q ss_pred ChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeecc
Q 017539 88 SPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHID 167 (369)
Q Consensus 88 ~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~ 167 (369)
+. .+....++++ ...+|+||||+|.|.|..++||++.... + .|.|
T Consensus 78 --------------Ds-------GIs~~~i~~f-~~~iP~fGvCMGlQCi~e~fGGkv~~a~---~--------~i~H-- 122 (223)
T KOG0026|consen 78 --------------DS-------GISLQTVLEL-GPLVPLFGVCMGLQCIGEAFGGKIVRSP---F--------GVMH-- 122 (223)
T ss_pred --------------cc-------cchHHHHHHh-CCCCceeeeehhhhhhhhhhCcEEeccC---c--------ceee--
Confidence 11 1122334433 3469999999999999999999987542 1 1445
Q ss_pred cCCCCCceeEEEEcC--CCcchhhhhccccccceEEEEecccchhh--cccC-CCeEEEEEcCCCcEEEEEeCCCCCCCC
Q 017539 168 YDNYDGHRHVVKVVK--DTPLHDWFKDSLEEEKMEIWVNSYHHQGV--KRLA-QRFVPMAFAPDGLIEGFYDPDAYNPAE 242 (369)
Q Consensus 168 ~~~~~~~~~~V~i~~--~s~L~~~~~~~~~~~~~~~~vns~H~~~V--~~L~-~g~~vlA~s~dg~Veaie~~~~~~~~~ 242 (369)
|...+|.... ..-+++.++ +.+.|..||+.+. +++| ..+++.||++||.|++.+|+. |
T Consensus 123 -----GK~S~i~~D~~~~~G~f~g~~-------q~~~V~RYHSLa~~~sSlP~d~L~VTawTEnG~iMgaRHkK-Y---- 185 (223)
T KOG0026|consen 123 -----GKSSMVHYDEKGEEGLFSGLS-------NPFIVGRYHSLVIEKDSFPSDELEVTAWTEDGLVMAARHRK-Y---- 185 (223)
T ss_pred -----ccccccccCCccccccccCCC-------CCeEEEeeeeeeeecccCCccceeeeEeccCcEEEeeeccc-c----
Confidence 3344554432 134555553 4688999999876 4588 789999999999999999986 2
Q ss_pred CCcEEEEcccCCccCCCCCCCCCCCCchHHHHHHHHHHHH
Q 017539 243 GKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVIA 282 (369)
Q Consensus 243 ~~~i~GvQFHPE~~~~~~~~~~~~~~~~~lf~~Fv~a~~~ 282 (369)
..+-|||||||...+..+ ..+.++|++....
T Consensus 186 -~~ieGVQfHPESIlteeG--------k~~irNflni~~~ 216 (223)
T KOG0026|consen 186 -KHIQGVQFHPESIITTEG--------KTIVRNFIKIVEK 216 (223)
T ss_pred -ccccceeecchhhhhhhh--------HHHHHHHHHhccc
Confidence 449999999999888766 3678999987654
No 66
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.83 E-value=5.2e-20 Score=170.28 Aligned_cols=178 Identities=17% Similarity=0.216 Sum_probs=112.3
Q ss_pred HHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhHH
Q 017539 33 YHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSI 112 (369)
Q Consensus 33 ~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~ 112 (369)
+-.+++..+|..++++. +++++ +.+|+||+|||.+.+. .+.++|+ .-
T Consensus 14 s~~~al~~~~~~~~~~~---~~~~l----~~~d~iIlPG~g~~~~-------------~~~~l~~-------------~g 60 (210)
T PRK14004 14 SCLKAVSLYTKDFVFTS---DPETI----ENSKALILPGDGHFDK-------------AMENLNS-------------TG 60 (210)
T ss_pred HHHHHHHHcCCeEEEEC---CHHHh----ccCCEEEECCCCchHH-------------HHHHHHH-------------cC
Confidence 45778999999888774 44443 3799999999863211 1122221 11
Q ss_pred HHHHHHHHHHcCCCEEEEeHHHHHHHHHhCC--------e-----eeeccchhhhccCC-CCcceeecccCCCCCceeEE
Q 017539 113 ELRLAKLCLERNIPYLGICRGSQVLNVACGG--------T-----LYQDIEKEVSRKCP-ENQRVVHIDYDNYDGHRHVV 178 (369)
Q Consensus 113 e~~li~~~~e~~iPiLGIClG~QlL~~a~GG--------~-----l~~~~~~e~g~~~~-~~~~v~H~~~~~~~~~~~~V 178 (369)
....++.+.+.++|+||||+|||+|+.+.+- . +.+..-.+ ++ ...+++|++|+ ++
T Consensus 61 l~~~i~~~~~~~~pilGiC~G~Q~l~~~~~e~~~~~~~~~~~Glg~~~~~v~~----~~~~~~~~ph~Gw~-------~v 129 (210)
T PRK14004 61 LRSTIDKHVESGKPLFGICIGFQILFESSEETNQGTKKEQIEGLGYIKGKIKK----FEGKDFKVPHIGWN-------RL 129 (210)
T ss_pred cHHHHHHHHHcCCCEEEECHhHHHHHHhcccccCCCcCcccCCcceeEEEEEE----cCCCCCcCCccCcc-------cc
Confidence 2456677778899999999999999998751 1 11110011 11 12468999885 34
Q ss_pred EEc--CCCcchhhhhccccccceEEEEecccchhhcccCCCeEEEEEcCC-Cc-EEEEEeCCCCCCCCCCcEEEEcccCC
Q 017539 179 KVV--KDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPD-GL-IEGFYDPDAYNPAEGKFIMGLQFHPE 254 (369)
Q Consensus 179 ~i~--~~s~L~~~~~~~~~~~~~~~~vns~H~~~V~~L~~g~~vlA~s~d-g~-Veaie~~~~~~~~~~~~i~GvQFHPE 254 (369)
.+. .+++++..++. .+.+..||++.+. .+..+.+++++++ +. +.++..+ .++||+|||||
T Consensus 130 ~~~~~~~~~lf~~l~~-------~~~v~~~HS~~~~-~~~~l~~sa~~~~~g~~~~a~~~~--------~~i~GvQFHPE 193 (210)
T PRK14004 130 QIRRKDKSKLLKGIGD-------QSFFYFIHSYRPT-GAEGNAITGLCDYYQEKFPAVVEK--------ENIFGTQFHPE 193 (210)
T ss_pred eeccCCCCccccCCCC-------CCEEEEeceeecC-CCCcceEEEeeeECCEEEEEEEec--------CCEEEEeCCcc
Confidence 433 34556666642 3456667877542 2344556666665 53 4455543 67999999999
Q ss_pred ccCCCCCCCCCCCCchHHHHHHHHH
Q 017539 255 RMRRPDSDEFDYPGCPSAYQEFVKA 279 (369)
Q Consensus 255 ~~~~~~~~~~~~~~~~~lf~~Fv~a 279 (369)
++.. .+ ..++++|++.
T Consensus 194 ~s~~-~G--------~~iL~nfl~~ 209 (210)
T PRK14004 194 KSHT-HG--------LKLLENFIEF 209 (210)
T ss_pred cCch-hH--------HHHHHHHHhh
Confidence 9884 44 5899999874
No 67
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=99.82 E-value=6.9e-20 Score=167.60 Aligned_cols=171 Identities=22% Similarity=0.231 Sum_probs=109.3
Q ss_pred HHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhHHH
Q 017539 34 HLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIE 113 (369)
Q Consensus 34 ~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e 113 (369)
..++++..|+.+.+++.. +. ++.+|+||++||.+ ++ + ...+++ +...
T Consensus 14 l~~~l~~~g~~v~v~~~~---~~----l~~~d~lii~G~~~--~~---~--------~~~~l~-------------~~~~ 60 (196)
T TIGR01855 14 VKRALKRVGAEPVVVKDS---KE----AELADKLILPGVGA--FG---A--------AMARLR-------------ENGL 60 (196)
T ss_pred HHHHHHHCCCcEEEEcCH---HH----hccCCEEEECCCCC--HH---H--------HHHHHH-------------HcCc
Confidence 567788899999888732 22 34799999998532 10 0 111221 1001
Q ss_pred HHHHHHHHHcCCCEEEEeHHHHHHHHH------------hCCeeeeccchhhhccCCCCcceeecccCCCCCceeEEEEc
Q 017539 114 LRLAKLCLERNIPYLGICRGSQVLNVA------------CGGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVV 181 (369)
Q Consensus 114 ~~li~~~~e~~iPiLGIClG~QlL~~a------------~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~~~~~~V~i~ 181 (369)
..+++.+.+.++|+||||+|+|+|+.+ +|+++.+.... ..++++ +..+.+.
T Consensus 61 ~~l~~~~~~~~~pvlGiC~G~Qll~~~~~~~~~~~glg~~~~~v~~~~~~----------~~~~~g-------~~~~~~~ 123 (196)
T TIGR01855 61 DLFVELVVRLGKPVLGICLGMQLLFERSEEGGGVPGLGLIKGNVVKLEAR----------KVPHMG-------WNEVHPV 123 (196)
T ss_pred HHHHHHHHhCCCCEEEECHHHHHhhhccccCCCCCCcceeeEEEEECCCC----------CCCccc-------CeeeeeC
Confidence 234477788899999999999999998 45555443110 123333 3556666
Q ss_pred CCCcchhhhhccccccceEEEEecccchhhcccCCCeEEEEEcCCCcEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCC
Q 017539 182 KDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDS 261 (369)
Q Consensus 182 ~~s~L~~~~~~~~~~~~~~~~vns~H~~~V~~L~~g~~vlA~s~dg~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~ 261 (369)
.++++++.++ ..+.+..+|++.+...+ + .+++.+++|......... .++||+|||||+... .
T Consensus 124 ~~~~l~~~l~-------~~~~v~~~Hs~~v~~~~-~-~~~a~~~~g~~~~~~~~~-------~~i~GvQFHPE~~~~-~- 185 (196)
T TIGR01855 124 KESPLLNGID-------EGAYFYFVHSYYAVCEE-E-AVLAYADYGEKFPAAVQK-------GNIFGTQFHPEKSGK-T- 185 (196)
T ss_pred CCChHHhCCC-------CCCEEEEECeeEecCCC-C-cEEEEEcCCcEEEEEEec-------CCEEEEECCCccCcH-h-
Confidence 6677777664 35677789999997544 4 467767676333333332 579999999998742 2
Q ss_pred CCCCCCCchHHHHHHHHH
Q 017539 262 DEFDYPGCPSAYQEFVKA 279 (369)
Q Consensus 262 ~~~~~~~~~~lf~~Fv~a 279 (369)
...++++|+++
T Consensus 186 -------g~~ll~~f~~~ 196 (196)
T TIGR01855 186 -------GLKLLENFLEL 196 (196)
T ss_pred -------HHHHHHHHHhC
Confidence 36899999863
No 68
>KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism]
Probab=99.82 E-value=6.2e-20 Score=168.71 Aligned_cols=210 Identities=21% Similarity=0.280 Sum_probs=137.1
Q ss_pred CCCcEEEEecCcccC-----cC-cccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCcc
Q 017539 8 VILPRVLIVSRRSVR-----KN-KFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYE 81 (369)
Q Consensus 8 ~~~P~IgIv~~~~~~-----~~-~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~ 81 (369)
+.+|+|||++.+..- +| .-..|+.++|++.+++.||+++++.++...+.+...|+.++|||++||- ..-+.|-
T Consensus 50 nykPvIGIL~hpg~g~~~rl~n~t~~~yIAASYVK~aEsgGARViPli~nepEe~lfqklelvNGviftGGw-ak~~dY~ 128 (340)
T KOG1559|consen 50 NYKPVIGILSHPGDGASGRLKNATGRSYIAASYVKLAESGGARVIPLIYNEPEEILFQKLELVNGVIFTGGW-AKRGDYF 128 (340)
T ss_pred ccCceeEEeccCCCCccceeccccCcchhHHHHHHHHHcCCceEEEEecCCcHHHHHHHHHHhceeEecCcc-cccccHH
Confidence 468999999876421 23 2367999999999999999999999999888888899999999999992 1111221
Q ss_pred ccCCCCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHc-----CCCEEEEeHHHHHHHHHhCCeeeeccchhhhcc
Q 017539 82 AETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLER-----NIPYLGICRGSQVLNVACGGTLYQDIEKEVSRK 156 (369)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~-----~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~ 156 (369)
+. ...+...++++ ..||+|||+|+.+|+....-. +++-..++
T Consensus 129 ~v-----------------------------vkkifnk~le~nDaGehFPvyg~CLGFE~lsmiISqn--rdile~~d-- 175 (340)
T KOG1559|consen 129 EV-----------------------------VKKIFNKVLERNDAGEHFPVYGICLGFELLSMIISQN--RDILERFD-- 175 (340)
T ss_pred HH-----------------------------HHHHHHHHHhccCCccccchhhhhhhHHHHHHHHhcC--hhHHHhhc--
Confidence 11 11223334443 289999999999999876522 11111111
Q ss_pred CCCCcceeecccCCCCCceeEEEEc----CCCcchhhhhcccccc-ceEEEEecccchhhc--------ccCCCeEEEEE
Q 017539 157 CPENQRVVHIDYDNYDGHRHVVKVV----KDTPLHDWFKDSLEEE-KMEIWVNSYHHQGVK--------RLAQRFVPMAF 223 (369)
Q Consensus 157 ~~~~~~v~H~~~~~~~~~~~~V~i~----~~s~L~~~~~~~~~~~-~~~~~vns~H~~~V~--------~L~~g~~vlA~ 223 (369)
. + + ...++... -.+.+|+.|+.++... ....-|..+|.++++ .|...|.++.+
T Consensus 176 --~---v---d------~AssLqF~~nvn~~~t~FQrFPpELLkkL~~dcLvmq~Hk~gisp~nF~~N~~Ls~FFnilTT 241 (340)
T KOG1559|consen 176 --A---V---D------VASSLQFVGNVNIHGTMFQRFPPELLKKLSTDCLVMQNHKFGISPKNFQGNPALSSFFNILTT 241 (340)
T ss_pred --c---c---c------cccceeeecccceeehhHhhCCHHHHHHhccchheeeccccccchhhccCCHHHHHHHhheee
Confidence 0 0 0 01122221 1345666565432110 112335567877764 36677889998
Q ss_pred cCCC----cEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCCchHHH
Q 017539 224 APDG----LIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAY 273 (369)
Q Consensus 224 s~dg----~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~~~~~~~~lf 273 (369)
+.|+ +|..++.+. +|+.|+|||||+.+...+. .++|+.+...
T Consensus 242 ~~D~~~k~fvSTv~~~k-------YPvtgfQWHPEKnafEWgs-s~IpHsedAi 287 (340)
T KOG1559|consen 242 CTDGNSKTFVSTVESKK-------YPVTGFQWHPEKNAFEWGS-SDIPHSEDAI 287 (340)
T ss_pred ecCCCceEEEEeeccee-------ccceeeeecCccCcccccc-CCCCCChhHH
Confidence 8777 666777663 8999999999998877665 4677776655
No 69
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=99.81 E-value=1.3e-19 Score=163.97 Aligned_cols=172 Identities=13% Similarity=0.081 Sum_probs=105.9
Q ss_pred HHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhHH
Q 017539 33 YHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSI 112 (369)
Q Consensus 33 ~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~ 112 (369)
.+++++++.|+.++.+... +. ++.+||||++||++ ..++... ++..
T Consensus 12 e~~~~l~~~g~~v~~v~~~---~~----l~~~dgiii~Gg~~---~~~~~~~------------------------~~~~ 57 (183)
T cd01749 12 EHIRALERLGVEVIEVRTP---ED----LEGIDGLIIPGGES---TTIGKLL------------------------RRTG 57 (183)
T ss_pred HHHHHHHHCCCeEEEECCH---HH----hccCCEEEECCchH---HHHHHHH------------------------HhCC
Confidence 4558999999999988642 22 45799999999952 1121100 1111
Q ss_pred HHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeecccCCCCCceeEEEEcCCCcchhhhhc
Q 017539 113 ELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKDTPLHDWFKD 192 (369)
Q Consensus 113 e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~~~~~~V~i~~~s~L~~~~~~ 192 (369)
....++.+.+.++|+||||.|+|+|+.++|+. . ....+|- ++ ..+....+. ...++....+.. ...
T Consensus 58 ~~~~i~~~~~~g~PvlGiC~G~qlL~~~~~~~--~-~~~glG~-~~--~~v~~~~~g-~~~g~~~~~l~~-----~~~-- 123 (183)
T cd01749 58 LLDPLREFIRAGKPVFGTCAGLILLAKEVEDQ--G-GQPLLGL-LD--ITVRRNAFG-RQVDSFEADLDI-----PGL-- 123 (183)
T ss_pred HHHHHHHHHHcCCeEEEECHHHHHHHHHhccc--C-CCCccCc-ee--EEEEeeccc-cccceEEEcCCC-----CcC--
Confidence 24668888889999999999999999999884 1 0011110 00 000000000 000112222110 001
Q ss_pred cccccceEEEEecccchhhcccCCCeEEEEEcCCCcEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCCchHH
Q 017539 193 SLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSA 272 (369)
Q Consensus 193 ~~~~~~~~~~vns~H~~~V~~L~~g~~vlA~s~dg~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~~~~~~~~l 272 (369)
+...+.+...|.+.|..+|++++++|.+++ .+++++.+ +++|+|||||.+.. .++
T Consensus 124 ----~~~~~~~~~~h~~~v~~~p~~~~~la~~~~-~~~a~~~~---------~~~g~qfHPE~~~~-----------~~~ 178 (183)
T cd01749 124 ----GLGPFPAVFIRAPVIEEVGPGVEVLAEYDG-KIVAVRQG---------NVLATSFHPELTDD-----------TRI 178 (183)
T ss_pred ----CCCccEEEEEECcEEEEcCCCcEEEEecCC-EEEEEEEC---------CEEEEEcCCccCCC-----------cch
Confidence 013466667899999999999999999865 44588753 59999999998753 367
Q ss_pred HHHHH
Q 017539 273 YQEFV 277 (369)
Q Consensus 273 f~~Fv 277 (369)
|+.|+
T Consensus 179 ~~~f~ 183 (183)
T cd01749 179 HEYFL 183 (183)
T ss_pred hhhhC
Confidence 77774
No 70
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=99.81 E-value=5.3e-19 Score=165.39 Aligned_cols=199 Identities=22% Similarity=0.247 Sum_probs=122.0
Q ss_pred EEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhH
Q 017539 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEE 91 (369)
Q Consensus 12 ~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~ 91 (369)
+|+|+.-+... -...++++++.+|+.+++++.... . ++.+||||||||.+ |++....
T Consensus 2 ~v~Vl~~~G~n-------~~~~~~~al~~~G~~~~~i~~~~~--~----l~~~d~lilpGG~~-----~~d~~~~----- 58 (227)
T TIGR01737 2 KVAVIRFPGTN-------CDRDTVYALRLLGVDAEIVWYEDG--S----LPDYDGVVLPGGFS-----YGDYLRA----- 58 (227)
T ss_pred eEEEEeCCCcC-------cHHHHHHHHHHCCCeEEEEecCCC--C----CCCCCEEEECCCCc-----ccccccc-----
Confidence 67888765331 223457899999999999875422 1 45799999999963 2221100
Q ss_pred HHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHH--hCCeeeeccchhhhccCCCCcceeecccC
Q 017539 92 LEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVA--CGGTLYQDIEKEVSRKCPENQRVVHIDYD 169 (369)
Q Consensus 92 ~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a--~GG~l~~~~~~e~g~~~~~~~~v~H~~~~ 169 (369)
... .+......+++.+.+.++|++|||.|+|+|+.+ ++|++.+....+++.
T Consensus 59 -----------~~~--~~~~~~~~~l~~~~~~g~pvlgIC~G~QlLa~~GlL~G~l~~n~~~~~~~-------------- 111 (227)
T TIGR01737 59 -----------GAI--AAASPIMQEVREFAEKGVPVLGICNGFQILVEAGLLPGALLPNDSLRFIC-------------- 111 (227)
T ss_pred -----------cch--hcchHHHHHHHHHHHcCCEEEEECHHHHHHHHcCCCCCceeecCCCceEE--------------
Confidence 000 011223467888889999999999999999996 788877654333321
Q ss_pred CCCCceeEEEEcC-CCcchhhhhccccccceEEEEecccchhh--------cccCCCeEEEEE------------cCCC-
Q 017539 170 NYDGHRHVVKVVK-DTPLHDWFKDSLEEEKMEIWVNSYHHQGV--------KRLAQRFVPMAF------------APDG- 227 (369)
Q Consensus 170 ~~~~~~~~V~i~~-~s~L~~~~~~~~~~~~~~~~vns~H~~~V--------~~L~~g~~vlA~------------s~dg- 227 (369)
.+..+++.. ++++++.+.. ...+.....|+++- ++|.+...+.++ +++|
T Consensus 112 ----~~~~~~v~~~~~~~~~~~~~-----g~~~~~pi~H~eG~y~~~~~~l~~l~~~~~i~~~y~d~~g~~~~~~npngs 182 (227)
T TIGR01737 112 ----RWVYLRVENADTIFTKNYKK-----GEVIRIPIAHGEGRYYADDETLARLESNDQVVFRYCDEDGDVAEEANPNGS 182 (227)
T ss_pred ----EeEEEEECCCCChhhccCCC-----CCEEEEEeEcCCcCeEcCHHHHHHHHHCCcEEEEEECCCCCCCCCCCCCCC
Confidence 134455433 3566666642 12344433455442 345455444433 2454
Q ss_pred --cEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCCchHHHHHHHHH
Q 017539 228 --LIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKA 279 (369)
Q Consensus 228 --~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~~~~~~~~lf~~Fv~a 279 (369)
.|+++.+++ .+++|+|||||+...+.-. -+.-..+|++|++.
T Consensus 183 ~~~i~~i~~~~-------~~~~g~~~HpE~~~~~~~~---~~~g~~~~~~~~~~ 226 (227)
T TIGR01737 183 VGNIAGIVNER-------GNVLGMMPHPERASEKLLG---GDDGLKLFESLVEW 226 (227)
T ss_pred HHHHcccCCCC-------CCEEEEecCchhhcccccC---CcccHHHHHHHHhh
Confidence 788999886 7899999999998321100 01136899999863
No 71
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.80 E-value=4.2e-19 Score=161.74 Aligned_cols=170 Identities=17% Similarity=0.276 Sum_probs=103.8
Q ss_pred hHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhH
Q 017539 32 EYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDS 111 (369)
Q Consensus 32 ~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~ 111 (369)
.++.+++++.|+.++++. +++++ +.+|+|||||+..... .+.++++..
T Consensus 13 ~s~~~al~~~g~~~~~v~---~~~~l----~~~D~lIlPG~g~~~~-------------~~~~L~~~g------------ 60 (192)
T PRK13142 13 SNVKRAIEHLGYEVVVSN---TSKII----DQAETIILPGVGHFKD-------------AMSEIKRLN------------ 60 (192)
T ss_pred HHHHHHHHHcCCCEEEEe---CHHHh----ccCCEEEECCCCCHHH-------------HHHHHHHCC------------
Confidence 357888999999999885 33443 4699999999853211 122333211
Q ss_pred HHHHHHHHHHHcCCCEEEEeHHHHHHHHHh--CCeeeecc-chhhhccCCCCcceeecccCCCCCceeEEEEcCCCcchh
Q 017539 112 IELRLAKLCLERNIPYLGICRGSQVLNVAC--GGTLYQDI-EKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKDTPLHD 188 (369)
Q Consensus 112 ~e~~li~~~~e~~iPiLGIClG~QlL~~a~--GG~l~~~~-~~e~g~~~~~~~~v~H~~~~~~~~~~~~V~i~~~s~L~~ 188 (369)
....++. ..++|+||||+|||+|+... |..-.-++ ..+. .+++...+++|++|+... ...++++
T Consensus 61 -l~~~i~~--~~g~PvlGIClGmQlL~~~~~eg~~~GLgll~~~V-~rf~~~~~vph~GWn~~~---------~~~~l~~ 127 (192)
T PRK13142 61 -LNAILAK--NTDKKMIGICLGMQLMYEHSDEGDASGLGFIPGNI-SRIQTEYPVPHLGWNNLV---------SKHPMLN 127 (192)
T ss_pred -cHHHHHH--hCCCeEEEECHHHHHHhhhcccCCcCccCceeEEE-EECCCCCCCCcccccccC---------CCCcccc
Confidence 1234444 45899999999999999976 22111111 1111 123344578999986421 1222322
Q ss_pred hhhccccccceEEEEecccchhhcccCCCeEEEEEcCCC--cEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCC
Q 017539 189 WFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDG--LIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDY 266 (369)
Q Consensus 189 ~~~~~~~~~~~~~~vns~H~~~V~~L~~g~~vlA~s~dg--~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~~~ 266 (369)
...|+++||+-. .++ .+++++..| ++.+++. .+++|+|||||++... |
T Consensus 128 ---------~~~yFVhSy~v~----~~~--~v~~~~~yg~~~~~~v~~---------~n~~g~QFHPEkS~~~-G----- 177 (192)
T PRK13142 128 ---------QDVYFVHSYQAP----MSE--NVIAYAQYGADIPAIVQF---------NNYIGIQFHPEKSGTY-G----- 177 (192)
T ss_pred ---------cEEEEECCCeEC----CCC--CEEEEEECCCeEEEEEEc---------CCEEEEecCcccCcHh-H-----
Confidence 246788777652 233 345555544 5666654 4699999999998753 3
Q ss_pred CCchHHHHHHHHH
Q 017539 267 PGCPSAYQEFVKA 279 (369)
Q Consensus 267 ~~~~~lf~~Fv~a 279 (369)
.+++++|++-
T Consensus 178 ---~~ll~nf~~~ 187 (192)
T PRK13142 178 ---LQILRQAIQG 187 (192)
T ss_pred ---HHHHHHHHhc
Confidence 5899999763
No 72
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=99.80 E-value=1.2e-18 Score=158.14 Aligned_cols=172 Identities=15% Similarity=0.113 Sum_probs=104.1
Q ss_pred HHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhHH
Q 017539 33 YHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSI 112 (369)
Q Consensus 33 ~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~ 112 (369)
+++++++++|+.++++.. +++ ++.+|||+||||++ +.++... ++..
T Consensus 13 e~~~~l~~~g~~~~~v~~---~~~----l~~~d~liipGG~~---~~~~~l~------------------------~~~~ 58 (184)
T TIGR03800 13 EHARALEALGVEGVEVKR---PEQ----LDEIDGLIIPGGES---TTLSRLL------------------------DKYG 58 (184)
T ss_pred HHHHHHHHCCCEEEEECC---hHH----hccCCEEEECCCCH---HHHHHHH------------------------Hhcc
Confidence 367899999999998863 233 34799999999952 1111000 0011
Q ss_pred HHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeecccCCCCCceeEEEEcCCCcchhhhhc
Q 017539 113 ELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKDTPLHDWFKD 192 (369)
Q Consensus 113 e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~~~~~~V~i~~~s~L~~~~~~ 192 (369)
....++.+.+.++|+||||.|+|+|+.++...... .+|- + +..+....+... -....+.+... ..+
T Consensus 59 l~~~i~~~~~~g~pilGIC~G~qlL~~~~~~~~~~----~lg~-~--~~~v~~~~~g~~-~~s~~~~l~~~-----~~~- 124 (184)
T TIGR03800 59 MFEPLRNFILSGLPVFGTCAGLIMLAKEIIGQKEG----YLGL-L--DMTVERNAYGRQ-VDSFEAEVDIK-----GVG- 124 (184)
T ss_pred HHHHHHHHHHcCCcEEEECHHHHHHHhhhccCCCC----ccCc-E--EEEEEeeccCCc-cccEEEEeecc-----cCC-
Confidence 23567888889999999999999999997432110 0110 0 000000000000 00122222110 011
Q ss_pred cccccceEEEEecccchhhcccCCCeEEEEEcCCCcEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCCchHH
Q 017539 193 SLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSA 272 (369)
Q Consensus 193 ~~~~~~~~~~vns~H~~~V~~L~~g~~vlA~s~dg~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~~~~~~~~l 272 (369)
...+.....|.+.|.++|++++++|++++ .++|++. .++||+|||||++.. -++
T Consensus 125 -----~~~~~~~~~h~~~v~~lp~~~~vla~~~~-~~~a~~~---------~~~~gvQfHPE~~~~-----------~~~ 178 (184)
T TIGR03800 125 -----DDPITGVFIRAPKIVSVGNGVEILAKVGN-RIVAVRQ---------GNILVSSFHPELTDD-----------HRV 178 (184)
T ss_pred -----CCcceEEEEcCCCcccCCCCeEEEEEeCC-eeEEEEe---------CCEEEEEeCCccCCC-----------chH
Confidence 11244556899999999999999999765 5567764 359999999998742 278
Q ss_pred HHHHHH
Q 017539 273 YQEFVK 278 (369)
Q Consensus 273 f~~Fv~ 278 (369)
|+.|++
T Consensus 179 ~~~f~~ 184 (184)
T TIGR03800 179 HEYFLE 184 (184)
T ss_pred HHHhhC
Confidence 998873
No 73
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=99.78 E-value=4.7e-18 Score=176.28 Aligned_cols=199 Identities=16% Similarity=0.184 Sum_probs=123.0
Q ss_pred CCcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCC
Q 017539 9 ILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLS 88 (369)
Q Consensus 9 ~~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~ 88 (369)
-.++|+|+..-.- + -.+..++++..|+.+.+++. ++. ++.+|+||||||.+.. .
T Consensus 5 ~~~~i~iiDyG~G---N-----~~sl~~al~~~G~~v~~v~~---~~~----l~~~D~lIlpG~gs~~-----~------ 58 (538)
T PLN02617 5 ADSEVTLLDYGAG---N-----VRSVRNAIRHLGFTIKDVQT---PED----ILNADRLIFPGVGAFG-----S------ 58 (538)
T ss_pred CCCeEEEEECCCC---C-----HHHHHHHHHHCCCeEEEECC---hhh----hccCCEEEECCCCCHH-----H------
Confidence 3578888764421 1 12467889999999988762 333 3579999999975421 1
Q ss_pred hhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHh---CCeeeecc-chhhhccCC--CCcc
Q 017539 89 PEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVAC---GGTLYQDI-EKEVSRKCP--ENQR 162 (369)
Q Consensus 89 ~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~---GG~l~~~~-~~e~g~~~~--~~~~ 162 (369)
.+.+++ +.-....++.+++.++|+||||+|||+|+.++ |+...-.. ..... +++ ....
T Consensus 59 --~m~~L~-------------~~gl~~~i~~~i~~g~PvLGIC~G~QlLa~~~~E~g~~~glg~l~G~v~-~~~~~~~~~ 122 (538)
T PLN02617 59 --AMDVLN-------------NRGMAEALREYIQNDRPFLGICLGLQLLFESSEENGPVEGLGVIPGVVG-RFDSSNGLR 122 (538)
T ss_pred --HHHHHH-------------HcCHHHHHHHHHHcCCCEEEECHHHHHHhhhhhhcCCccCcccccceEE-ECCccCCCC
Confidence 111221 01124677778888999999999999999875 22111000 00000 000 1134
Q ss_pred eeecccCCCCCceeEEEEcCCCcchhhhhccccccceEEEEecccchhhcccCCC-eEEEEEcC--CCcEEEEEeCCCCC
Q 017539 163 VVHIDYDNYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQR-FVPMAFAP--DGLIEGFYDPDAYN 239 (369)
Q Consensus 163 v~H~~~~~~~~~~~~V~i~~~s~L~~~~~~~~~~~~~~~~vns~H~~~V~~L~~g-~~vlA~s~--dg~Veaie~~~~~~ 239 (369)
++|++| +.+.+.++++++..++ +...++ +|++.+..+|.+ ..++++++ +++++++++.
T Consensus 123 vp~iGw-------~~V~~~~~spL~~~l~-----~~~vy~---vHSy~v~~~p~~~~~v~a~~~~g~~~IaAI~~g---- 183 (538)
T PLN02617 123 VPHIGW-------NALQITKDSELLDGVG-----GRHVYF---VHSYRATPSDENKDWVLATCNYGGEFIASVRKG---- 183 (538)
T ss_pred CCeecc-------eEEEecCCChhHhcCC-----CcEEEE---EeEEEEEecCCCCcEEEEEEccCCCcEEEEEeC----
Confidence 677765 6677777888887664 222344 455555445443 34556654 4589999863
Q ss_pred CCCCCcEEEEcccCCccCCCCCCCCCCCCchHHHHHHHHHHHH
Q 017539 240 PAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVIA 282 (369)
Q Consensus 240 ~~~~~~i~GvQFHPE~~~~~~~~~~~~~~~~~lf~~Fv~a~~~ 282 (369)
+++|+|||||++.. .+ .++|++|++.+..
T Consensus 184 -----nI~GVQFHPE~s~~-~G--------~~L~~nFl~~~~~ 212 (538)
T PLN02617 184 -----NVHAVQFHPEKSGA-TG--------LSILRRFLEPKSS 212 (538)
T ss_pred -----CEEEEEcCCccCch-hH--------HHHHHHHHHhhhh
Confidence 69999999999862 22 5899999987664
No 74
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=99.77 E-value=1.5e-17 Score=156.72 Aligned_cols=200 Identities=14% Similarity=0.194 Sum_probs=117.7
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChh
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPE 90 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~ 90 (369)
.+|||++..... ..++++++++|+.++++.. ++. +..+||||||||.+ ..+.
T Consensus 2 m~igVLa~qG~~---------~e~~~aL~~lG~ev~~v~~---~~~----L~~~DgLILPGGfs---~~~~--------- 53 (248)
T PLN02832 2 MAIGVLALQGSF---------NEHIAALRRLGVEAVEVRK---PEQ----LEGVSGLIIPGGES---TTMA--------- 53 (248)
T ss_pred cEEEEEeCCCch---------HHHHHHHHHCCCcEEEeCC---HHH----hccCCEEEeCCCHH---HHHH---------
Confidence 479999877431 2457889999999998863 333 34799999999842 1111
Q ss_pred HHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHh-C----Ce-eeeccc----h-hhhc---c
Q 017539 91 ELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVAC-G----GT-LYQDIE----K-EVSR---K 156 (369)
Q Consensus 91 ~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~-G----G~-l~~~~~----~-e~g~---~ 156 (369)
.+.+ ..-....++.+.+.++|+||||.|||+|+... + +. ...... + -+|. +
T Consensus 54 ---~L~~------------~~gl~~~I~~~v~~g~PvLGiC~GmqlLa~~~~~~~~~~~~~lg~Ldi~v~RN~~g~qv~s 118 (248)
T PLN02832 54 ---KLAE------------RHNLFPALREFVKSGKPVWGTCAGLIFLAERAVGQKEGGQELLGGLDCTVHRNFFGSQINS 118 (248)
T ss_pred ---HHHh------------hcchHHHHHHHHHcCCCEEEEChhHHHHHHHhcccccCCcceeCCccceEEecccCceeEe
Confidence 1110 00123556777778999999999999999875 2 21 011000 0 1221 1
Q ss_pred CCCCcceeecccCCCC-CceeEEEEcCCCcchhhhhccccccceEEEEecccchhhcccCCCeEEEEEcCCC---cEEEE
Q 017539 157 CPENQRVVHIDYDNYD-GHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDG---LIEGF 232 (369)
Q Consensus 157 ~~~~~~v~H~~~~~~~-~~~~~V~i~~~s~L~~~~~~~~~~~~~~~~vns~H~~~V~~L~~g~~vlA~s~dg---~Veai 232 (369)
+....+++|++|+... ...+.|.+. ...+ .. .+...+.+++|+... +. .-.+.|+++.| .+.++
T Consensus 119 fe~~l~ip~~gwn~~~~~~~~~vFir-ap~i---~~----~~~~v~~l~sy~~~~-~~---~~~~~a~~~y~~~~~~~aV 186 (248)
T PLN02832 119 FETELPVPELAASEGGPETFRAVFIR-APAI---LS----VGPGVEVLAEYPLPS-EK---ALYSSSTDAEGRDKVIVAV 186 (248)
T ss_pred EEcCCcCCccccccccccccceEEec-CCce---Ee----CCCcEEEEEEecccc-cc---cccccccccccCCceEEEE
Confidence 2233568899886421 011222222 1222 10 023456677776443 11 12344555444 57777
Q ss_pred EeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCCchHHHHHHHHHHHHHHH
Q 017539 233 YDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVIAYQK 285 (369)
Q Consensus 233 e~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~~~~~~~~lf~~Fv~a~~~~~~ 285 (369)
+. .+++|+|||||.+.. .+++++|++.+.....
T Consensus 187 ~q---------gnvlatqFHPEls~d-----------~rih~~Fl~~~~~~~~ 219 (248)
T PLN02832 187 KQ---------GNLLATAFHPELTAD-----------TRWHSYFVKMVSESEE 219 (248)
T ss_pred Ee---------CCEEEEEccCccCCc-----------cHHHHHHHHHHHHhhh
Confidence 76 469999999999874 2899999999876433
No 75
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=99.77 E-value=4.4e-18 Score=167.54 Aligned_cols=180 Identities=22% Similarity=0.313 Sum_probs=125.1
Q ss_pred hhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHH
Q 017539 55 HMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGS 134 (369)
Q Consensus 55 ~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~ 134 (369)
++..+.+...|||++|||-+ ...- ...+.++++|+++++|+||||+||
T Consensus 355 ~~aW~~l~~adGilvPGGFG-------~RGv-------------------------eG~i~Aak~ARen~iP~LGiCLGm 402 (585)
T KOG2387|consen 355 HAAWQKLKSADGILVPGGFG-------DRGV-------------------------EGKILAAKWARENKIPFLGICLGM 402 (585)
T ss_pred HHHHHHhccCCeEEeCCccc-------ccch-------------------------hHHHHHHHHHHhcCCCeEeeehhh
Confidence 45566778899999999953 1110 123578999999999999999999
Q ss_pred HHHHHHhCCeee--ecc-chhhhccCCCC-------cceeecccCCCCCceeEEEEcCCCcchhhhhcc-ccc--cceEE
Q 017539 135 QVLNVACGGTLY--QDI-EKEVSRKCPEN-------QRVVHIDYDNYDGHRHVVKVVKDTPLHDWFKDS-LEE--EKMEI 201 (369)
Q Consensus 135 QlL~~a~GG~l~--~~~-~~e~g~~~~~~-------~~v~H~~~~~~~~~~~~V~i~~~s~L~~~~~~~-~~~--~~~~~ 201 (369)
|+-...|..++. ++. ..|+.+..+.. ....|++-....|.+..+-...++.+.++|++. ... .+++|
T Consensus 403 Q~AvIEfaRnvLg~~dAnStEF~p~~~~~vVi~MPE~~~~~mGgtMRLG~R~t~f~~~~s~~~kLYG~~~~V~ERHRHRy 482 (585)
T KOG2387|consen 403 QLAVIEFARNVLGLKDANSTEFDPETKNPVVIFMPEHNKTHMGGTMRLGSRRTVFQDKDSKLRKLYGNVEFVDERHRHRY 482 (585)
T ss_pred hHHHHHHHHHhhCCCCCCccccCCCCCCcEEEECcCCCcccccceeeecccceeeecCchHHHHHhCCchhhhhhhhcce
Confidence 999998877643 232 24554322111 112344444444555555555677888889852 222 25788
Q ss_pred EEecccchhhcccCCCeEEEEEcCCC-cEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCCchHHHHHHHHHH
Q 017539 202 WVNSYHHQGVKRLAQRFVPMAFAPDG-LIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAV 280 (369)
Q Consensus 202 ~vns~H~~~V~~L~~g~~vlA~s~dg-~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~~~~~~~~lf~~Fv~a~ 280 (369)
+||.--...+.+ .|+..++.+.+| .+|.+|.++ |++++|+|||||+.+.+..++ ++|-..+.+.
T Consensus 483 EVNP~~v~~le~--~Gl~FvGkd~~g~rmeI~El~~------HP~fVg~QfHPE~~srp~kps-------p~flGlv~as 547 (585)
T KOG2387|consen 483 EVNPEMVKQLEQ--AGLSFVGKDVTGKRMEIIELES------HPFFVGVQFHPEFKSRPDKPS-------PLFLGLVAAS 547 (585)
T ss_pred ecCHHHHHHHHh--cCcEEEeecCCCcEEEEEEcCC------CCceeeeccCHHHhcCCCCCC-------cchhHhHHHH
Confidence 888655555544 789999999998 899999987 689999999999999988773 5555555544
Q ss_pred H
Q 017539 281 I 281 (369)
Q Consensus 281 ~ 281 (369)
.
T Consensus 548 ~ 548 (585)
T KOG2387|consen 548 C 548 (585)
T ss_pred H
Confidence 3
No 76
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.76 E-value=3.1e-17 Score=152.73 Aligned_cols=198 Identities=22% Similarity=0.300 Sum_probs=125.4
Q ss_pred EEEEecCcccCcCcccccchhHHHHHHH-HCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChh
Q 017539 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIV-GYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPE 90 (369)
Q Consensus 12 ~IgIv~~~~~~~~~~~~~v~~~~l~~l~-~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~ 90 (369)
+|+|+..+... -...-.++++ .+|+.+..++... . .++.+|+|+||||.+. ++...
T Consensus 2 ~v~Vl~~~G~n-------~~~d~~~a~~~~~G~~~~~v~~~~--~----~l~~~D~lvipGG~~~-----~d~l~----- 58 (219)
T PRK03619 2 KVAVIVFPGSN-------CDRDMARALRDLLGAEPEYVWHKE--T----DLDGVDAVVLPGGFSY-----GDYLR----- 58 (219)
T ss_pred EEEEEecCCcC-------hHHHHHHHHHhcCCCeEEEEecCc--C----CCCCCCEEEECCCCch-----hhhhc-----
Confidence 67888766432 1122367788 7999988876432 1 2457999999999632 11100
Q ss_pred HHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHH--hCCeeeeccchhhhccCCCCcceeeccc
Q 017539 91 ELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVA--CGGTLYQDIEKEVSRKCPENQRVVHIDY 168 (369)
Q Consensus 91 ~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a--~GG~l~~~~~~e~g~~~~~~~~v~H~~~ 168 (369)
. . ...+......+++.+.++++|++|||.|+|+|+.+ ++|++.+....++.
T Consensus 59 ---------~--~--~~~~~~~~~~~l~~~~~~g~~ilgIC~G~qlLa~~GLL~g~l~~n~~~~~~-------------- 111 (219)
T PRK03619 59 ---------C--G--AIAAFSPIMKAVKEFAEKGKPVLGICNGFQILTEAGLLPGALTRNASLKFI-------------- 111 (219)
T ss_pred ---------c--c--hhhhchHHHHHHHHHHHCCCEEEEECHHHHHHHHcCCCCCeEEEcCCCcEE--------------
Confidence 0 0 00011223567788888999999999999999997 78887765433332
Q ss_pred CCCCCceeEEEEcC-CCcchhhhhccccccceEEEEecccchh--------hccc-CCCeEEEEEc---CCC---cEEEE
Q 017539 169 DNYDGHRHVVKVVK-DTPLHDWFKDSLEEEKMEIWVNSYHHQG--------VKRL-AQRFVPMAFA---PDG---LIEGF 232 (369)
Q Consensus 169 ~~~~~~~~~V~i~~-~s~L~~~~~~~~~~~~~~~~vns~H~~~--------V~~L-~~g~~vlA~s---~dg---~Veai 232 (369)
..+..+++.+ ++++++.++. ...+.++..|+.+ +++| .+++.++.++ ++| .|+++
T Consensus 112 ----~~~v~v~i~~~~~~~~~~~~~-----g~~~~~~~aH~~~r~~~~~~~~~~l~~~~~~~~~~~~~npngs~~~ia~i 182 (219)
T PRK03619 112 ----CRDVHLRVENNDTPFTSGYEK-----GEVIRIPIAHGEGNYYADEETLKRLEGNGQVVFRYCDENPNGSVNDIAGI 182 (219)
T ss_pred ----EEEEEEEECCCCChhhcCCCC-----CCEEEEEEEcCcccEEECHHHHHHHHhCCcEEEEEcCCCCCCCHHHhccc
Confidence 1245666654 5777777742 2346666677765 3445 4566666655 777 46666
Q ss_pred EeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCCchHHHHHHHH
Q 017539 233 YDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVK 278 (369)
Q Consensus 233 e~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~~~~~~~~lf~~Fv~ 278 (369)
..++ .+++|+|||||+...+.-.. ....++|++|++
T Consensus 183 ~~~~-------~~~~g~~~HPE~~~~~~~~~---~~g~~lf~~~v~ 218 (219)
T PRK03619 183 VNEK-------GNVLGMMPHPERAVEPLLGS---TDGLKLFESLLK 218 (219)
T ss_pred CCCC-------CCEEEEeCCCCccccCccCC---CcCHHHHHHHhh
Confidence 6543 78999999999997651000 013689999985
No 77
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=99.69 E-value=1.8e-16 Score=142.56 Aligned_cols=141 Identities=21% Similarity=0.284 Sum_probs=101.2
Q ss_pred hhcCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHH
Q 017539 59 DSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLN 138 (369)
Q Consensus 59 ~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~ 138 (369)
+.|+.+||++|||+.. +.+++. +||.+| ...++.....++||+|||.|||+++
T Consensus 55 ~Dl~ky~gfvIsGS~~---dAf~d~---------dWI~KL---------------cs~~kkld~mkkkvlGICFGHQiia 107 (245)
T KOG3179|consen 55 EDLEKYDGFVISGSKH---DAFSDA---------DWIKKL---------------CSFVKKLDFMKKKVLGICFGHQIIA 107 (245)
T ss_pred hhhhhhceEEEeCCcc---cccccc---------hHHHHH---------------HHHHHHHHhhccceEEEeccHHHHH
Confidence 3466899999999852 223322 366432 4566777778899999999999999
Q ss_pred HHhCCeeeeccc-hhhhccCCCCcceeecccCCCCCceeEEEEcCCCcchhhhhccccccceEEEEecccchhhcccCCC
Q 017539 139 VACGGTLYQDIE-KEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQR 217 (369)
Q Consensus 139 ~a~GG~l~~~~~-~e~g~~~~~~~~v~H~~~~~~~~~~~~V~i~~~s~L~~~~~~~~~~~~~~~~vns~H~~~V~~L~~g 217 (369)
.+.||++.+... .+++ .+...-|+. .....+.||+ -+..+.++..|.+.|-.+|++
T Consensus 108 ra~Gg~Vgra~KG~~~~-----------------lg~itivk~--~~~~~~yFG~----~~~~l~IikcHqDevle~PE~ 164 (245)
T KOG3179|consen 108 RAKGGKVGRAPKGPDLG-----------------LGSITIVKD--AEKPEKYFGE----IPKSLNIIKCHQDEVLELPEG 164 (245)
T ss_pred HhhCCccccCCCCCccc-----------------ccceEEEEe--cccchhhccc----chhhhhHHhhcccceecCCch
Confidence 999999987643 1211 011222222 2222334441 134567778999999999999
Q ss_pred eEEEEEcCCCcEEEEEeCCCCCCCCCCcEEEEcccCCccC
Q 017539 218 FVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMR 257 (369)
Q Consensus 218 ~~vlA~s~dg~Veaie~~~~~~~~~~~~i~GvQFHPE~~~ 257 (369)
++++|+|+++.+|+++.++ .++++|-|||+..
T Consensus 165 a~llasSe~ceve~fs~~~--------~~l~fQGHPEyn~ 196 (245)
T KOG3179|consen 165 AELLASSEKCEVEMFSIED--------HLLCFQGHPEYNK 196 (245)
T ss_pred hhhhccccccceEEEEecc--------eEEEecCCchhhH
Confidence 9999999999999999984 6999999999875
No 78
>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=3.3e-16 Score=157.13 Aligned_cols=197 Identities=22% Similarity=0.392 Sum_probs=123.6
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHH-CCCEEEEE-cCCCChhhhhhhcCC---CCEEEECCCCCCCCCCccccCC
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVG-YGAVPAIV-PRVSGVHMLLDSFEP---IHGVLLCEGEDIDPSLYEAETS 85 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~-~Ga~~viv-p~~~~~~~l~~~l~~---~DGlll~GG~didp~~y~~~~~ 85 (369)
-+++.++++++++-+.+ ++|.. .|.-+|++ .+...-++.-+.+.+ +|+||+..||+ +| ...+..
T Consensus 15 l~~LlID~YDSyTfNiy--------~ll~~~~~vp~V~~vh~~~~~~d~~~~l~q~~~FDaIVVgPGPG-~P-~~a~d~- 83 (767)
T KOG1224|consen 15 LRTLLIDNYDSYTFNIY--------QLLSTINGVPPVVIVHDEWTWEDAYHYLYQDVAFDAIVVGPGPG-SP-MCAADI- 83 (767)
T ss_pred eeEEEEecccchhhhHH--------HHHHHhcCCCcEEEEeccccCHHHHHHHhhccccceEEecCCCC-CC-CcHHHH-
Confidence 45677788876654433 33443 34444443 333222222333333 99999998876 44 222111
Q ss_pred CCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceee
Q 017539 86 NLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVH 165 (369)
Q Consensus 86 ~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H 165 (369)
.+..++...| +++||||||+|||.|+.+.|+.+..... +.|
T Consensus 84 -------------------------gI~~rl~~~~--~~iPilGICLGfQal~l~hGA~v~~~n~------------p~H 124 (767)
T KOG1224|consen 84 -------------------------GICLRLLLEC--RDIPILGICLGFQALGLVHGAHVVHANE------------PVH 124 (767)
T ss_pred -------------------------HHHHHHHHhc--CCCceeeeehhhHhHhhhcccceecCCC------------ccc
Confidence 2333444444 3699999999999999999999773211 123
Q ss_pred cccCCCCCceeEEEEcCCCcchhhhhccccccceEEEEecccchhhcccCCCeEEEEEc---CCC-cEEEEEeCCCCCCC
Q 017539 166 IDYDNYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFA---PDG-LIEGFYDPDAYNPA 241 (369)
Q Consensus 166 ~~~~~~~~~~~~V~i~~~s~L~~~~~~~~~~~~~~~~vns~H~~~V~~L~~g~~vlA~s---~dg-~Veaie~~~~~~~~ 241 (369)
|....+.. .++.++..+.. +-...|.+..||+..+..+|-+..++++. ++| .++++.+..
T Consensus 125 -------Grvs~i~~-~~~~~f~gi~s---g~~~~fK~~RYHSL~in~~pid~l~il~t~~ddng~ilMsi~~~~----- 188 (767)
T KOG1224|consen 125 -------GRVSGIEH-DGNILFSGIPS---GRNSDFKVVRYHSLIINSLPIDLLPILWTIYDDNGHILMSIMHSS----- 188 (767)
T ss_pred -------ceeeeEEe-cCcEEEccCCC---CCcccceeEEeEEEEecCCchhhhcceeEeecCCceEEEEeeccC-----
Confidence 33445554 34444443321 01246778889999888888776555443 334 788999885
Q ss_pred CCCcEEEEcccCCccCCCCCCCCCCCCchHHHHHHHHHHHHH
Q 017539 242 EGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVIAY 283 (369)
Q Consensus 242 ~~~~i~GvQFHPE~~~~~~~~~~~~~~~~~lf~~Fv~a~~~~ 283 (369)
.|.||+|||||...+..+ ..+|++|++....+
T Consensus 189 --fPhfG~qyHPES~~s~~g--------~~lfkNFl~lt~~~ 220 (767)
T KOG1224|consen 189 --FPHFGLQYHPESIASTYG--------SQLFKNFLDLTVNY 220 (767)
T ss_pred --CCccceeeChHHhhhhhh--------HHHHHHHHHhhccC
Confidence 889999999999887765 48999999976543
No 79
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=99.57 E-value=6.3e-14 Score=135.82 Aligned_cols=137 Identities=19% Similarity=0.114 Sum_probs=95.0
Q ss_pred CCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHh
Q 017539 62 EPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVAC 141 (369)
Q Consensus 62 ~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~ 141 (369)
..+||+||||.+- .--.|++.+. | +. ...+++++.+..+|+||||.|+|+++.++
T Consensus 98 ~~~DG~IITGAp~-e~~~fedv~Y--------W---------------~E-l~~i~~w~~~~~~s~LgICwGaQa~a~al 152 (302)
T PRK05368 98 EKFDGLIITGAPV-EQLPFEDVDY--------W---------------DE-LKEILDWAKTHVTSTLFICWAAQAALYHL 152 (302)
T ss_pred CCCCEEEEcCCCC-CCccCCCCch--------H---------------HH-HHHHHHHHHHcCCCEEEEcHHHHHHHHHc
Confidence 3799999999961 1113444332 0 01 24677777788999999999999999999
Q ss_pred CCeeeeccc-hhhhccCCCCcceeecccCCCCCceeEEEE-cCCCcchhhhhccccccceEEEEecccchhhc----ccC
Q 017539 142 GGTLYQDIE-KEVSRKCPENQRVVHIDYDNYDGHRHVVKV-VKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVK----RLA 215 (369)
Q Consensus 142 GG~l~~~~~-~e~g~~~~~~~~v~H~~~~~~~~~~~~V~i-~~~s~L~~~~~~~~~~~~~~~~vns~H~~~V~----~L~ 215 (369)
||....... +.+| .....+ .+..++.+.+.+ .|.+...|...|. .++
T Consensus 153 gGi~k~~~~~K~~G--------------------v~~~~~~~~~~pL~~g~~d-------~F~~phSr~~~V~~~~i~~~ 205 (302)
T PRK05368 153 YGIPKYTLPEKLSG--------------------VFEHRVLDPHHPLLRGFDD-------SFLVPHSRYTEVREEDIRAA 205 (302)
T ss_pred CCCccCCCCCceeE--------------------EEEEEEcCCCChhhcCCCC-------ccccceeehhhccHHHhccC
Confidence 996221111 2332 222222 235677777753 5667777777773 378
Q ss_pred CCeEEEEEcCCCcEEEEEeCCCCCCCCCCcEEEEcccCCccC
Q 017539 216 QRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMR 257 (369)
Q Consensus 216 ~g~~vlA~s~dg~Veaie~~~~~~~~~~~~i~GvQFHPE~~~ 257 (369)
++++++|.|+.+-+.++..++ ..++++|+|||++.
T Consensus 206 ~~l~vLA~S~~~gv~~~~~~~-------~r~~~vQgHPEYd~ 240 (302)
T PRK05368 206 TGLEILAESEEAGVYLFASKD-------KREVFVTGHPEYDA 240 (302)
T ss_pred CCCEEEecCCCCCeEEEEeCC-------CCEEEEECCCCCCH
Confidence 999999999999899998864 57999999999976
No 80
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.50 E-value=1.3e-12 Score=124.60 Aligned_cols=223 Identities=18% Similarity=0.236 Sum_probs=118.4
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCC-CCCCccccCCCCC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDI-DPSLYEAETSNLS 88 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~di-dp~~y~~~~~~~~ 88 (369)
+++|+|+.-+..... ....++++.+|+.+.+++..... .....++.+|||+|+||.+. |...++...
T Consensus 3 ~~kvaVl~~pG~n~d-------~e~~~Al~~aG~~v~~v~~~~~~-~~~~~l~~~DgLvipGGfs~gD~l~~g~~~---- 70 (261)
T PRK01175 3 SIRVAVLRMEGTNCE-------DETVKAFRRLGVEPEYVHINDLA-AERKSVSDYDCLVIPGGFSAGDYIRAGAIF---- 70 (261)
T ss_pred CCEEEEEeCCCCCCH-------HHHHHHHHHCCCcEEEEeecccc-ccccchhhCCEEEECCCCCcccccccchhh----
Confidence 468999876543211 13468899999999988754211 11223568999999999532 211111000
Q ss_pred hhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeeccc
Q 017539 89 PEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDY 168 (369)
Q Consensus 89 ~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~~ 168 (369)
. ...+ ......++.+.++++|+||||.|+|+|+.+ | -+ +... .... +......+..-
T Consensus 71 ------~----------~~l~-~~l~~~Ik~f~~~gkpVLGICnG~QlLa~~-G-lL-pg~~-~~~~--~~~~~L~~N~s 127 (261)
T PRK01175 71 ------A----------ARLK-AVLRKDIEEFIDEGYPIIGICNGFQVLVEL-G-LL-PGFD-EIAE--KPEMALTVNES 127 (261)
T ss_pred ------H----------HHHH-HHHHHHHHHHHHCCCeEEEECHHHHHHHHC-C-CC-CCCC-cccc--CCcceEeecCC
Confidence 0 0000 112267888899999999999999999984 2 11 1100 0000 00000111110
Q ss_pred CCCCCceeEEEEcC-CCcchhhhhccccccceEEEEecccchh---------hccc-CCCeEEEEE------------cC
Q 017539 169 DNYDGHRHVVKVVK-DTPLHDWFKDSLEEEKMEIWVNSYHHQG---------VKRL-AQRFVPMAF------------AP 225 (369)
Q Consensus 169 ~~~~~~~~~V~i~~-~s~L~~~~~~~~~~~~~~~~vns~H~~~---------V~~L-~~g~~vlA~------------s~ 225 (369)
..+...+..+++.. .+++.+.+.+ ..+.+...|+++ .++| ..+..++-+ ++
T Consensus 128 ~~f~~~~~~~~v~~~~s~~~~~~~~------~~~~~piah~eG~~~~~~~~~l~~l~~~~~i~~~Y~d~~g~~~~~p~NP 201 (261)
T PRK01175 128 NRFECRPTYLKKENRKCIFTKLLKK------DVFQVPVAHAEGRVVFSEEEILERLIENDQIVFRYVDENGNYAGYPWNP 201 (261)
T ss_pred CCeEEeeeEEEECCCCChhHhccCC------CEEEEeeEcCCcceEeCCHHHHHHHHHCCcEEEEEeCCCCCCCCCCCCC
Confidence 11111244555544 5666665542 224444444442 1122 233444433 45
Q ss_pred CC---cEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCC-----CCCCCCchHHHHHHHHHH
Q 017539 226 DG---LIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSD-----EFDYPGCPSAYQEFVKAV 280 (369)
Q Consensus 226 dg---~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~-----~~~~~~~~~lf~~Fv~a~ 280 (369)
+| .|+||-.++ .+++|+..||||...+.-- ...-..-..+|+++++..
T Consensus 202 NGs~~~IAGi~~~~-------G~vlglMpHPEr~~~~~~~~~~~~~~~~~~g~~~f~~~~~~~ 257 (261)
T PRK01175 202 NGSIYNIAGITNEK-------GNVIGLMPHPERAFYGYQHPYWEKEEDYGDGKIFFDSLINYL 257 (261)
T ss_pred CCChhhcceeECCC-------CCEEEEcCCHHHhhchhhccccccccCCCchHHHHHHHHHHH
Confidence 56 688998886 7899999999998753300 000012368898887643
No 81
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.47 E-value=1.9e-12 Score=116.61 Aligned_cols=169 Identities=14% Similarity=0.124 Sum_probs=100.4
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChh
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPE 90 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~ 90 (369)
.+|||++-.... ..|.+++++.|+.++++. +++++ +.+|+|+||||+.-.
T Consensus 3 ~~igVLalqG~~---------~Eh~~al~~lG~~v~~v~---~~~~l----~~~D~LILPGG~~t~-------------- 52 (179)
T PRK13526 3 QKVGVLAIQGGY---------QKHADMFKSLGVEVKLVK---FNNDF----DSIDRLVIPGGESTT-------------- 52 (179)
T ss_pred cEEEEEECCccH---------HHHHHHHHHcCCcEEEEC---CHHHH----hCCCEEEECCChHHH--------------
Confidence 579999876431 138899999999988775 44443 479999999995210
Q ss_pred HHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHh---C---CeeeeccchhhhccCCCCccee
Q 017539 91 ELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVAC---G---GTLYQDIEKEVSRKCPENQRVV 164 (369)
Q Consensus 91 ~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~---G---G~l~~~~~~e~g~~~~~~~~v~ 164 (369)
+. ...++.-....++.+.+ ++|+||||.|+|+|+... | +++.+.. +|
T Consensus 53 ----~~---------~ll~~~~l~~~Ik~~~~-~kpilGICaG~qlL~~~s~~Lg~idg~V~Rn~---~G---------- 105 (179)
T PRK13526 53 ----LL---------NLLNKHQIFDKLYNFCS-SKPVFGTCAGSIILSKGEGYLNLLDLEVQRNA---YG---------- 105 (179)
T ss_pred ----HH---------HHhhhcCcHHHHHHHHc-CCcEEEEcHHHHHHHccCCCCCCccEEEEEcC---CC----------
Confidence 00 00011112456666654 789999999999999842 1 1222211 11
Q ss_pred ecccCCCCCc-eeEEEEcCCCcchhhhhccccccceEEEEecccchhhcccCCCeEEEEEcCCCcEEEEEeCCCCCCCCC
Q 017539 165 HIDYDNYDGH-RHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEG 243 (369)
Q Consensus 165 H~~~~~~~~~-~~~V~i~~~s~L~~~~~~~~~~~~~~~~vns~H~~~V~~L~~g~~vlA~s~dg~Veaie~~~~~~~~~~ 243 (369)
.+... ..++.+ ++. .+...-.-...+.+.+++.+++|+-+ +.+-+++..
T Consensus 106 -----rq~~sf~~~~~~-~~~---------------~~~~vFiRAP~i~~~~~~v~vla~~~-~~~v~v~q~-------- 155 (179)
T PRK13526 106 -----RQVDSFVADISF-NDK---------------NITGVFIRAPKFIVVGNQVDILSKYQ-NSPVLLRQA-------- 155 (179)
T ss_pred -----CccceeeeecCc-CCc---------------eEEEEEEcCceEeEcCCCcEEEEEEC-CEEEEEEEC--------
Confidence 00000 000111 010 12221223444567789999999885 456677764
Q ss_pred CcEEEEcccCCccCCCCCCCCCCCCchHHHHHHHH
Q 017539 244 KFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVK 278 (369)
Q Consensus 244 ~~i~GvQFHPE~~~~~~~~~~~~~~~~~lf~~Fv~ 278 (369)
+++++-||||.+.+ .++.+-|++
T Consensus 156 -~~l~~~FHPElt~d-----------~r~h~~f~~ 178 (179)
T PRK13526 156 -NILVSSFHPELTQD-----------PTVHEYFLA 178 (179)
T ss_pred -CEEEEEeCCccCCC-----------chHHHHHhc
Confidence 69999999998753 367788875
No 82
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=99.45 E-value=4e-13 Score=129.22 Aligned_cols=177 Identities=19% Similarity=0.282 Sum_probs=113.8
Q ss_pred HHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCc-hhhH
Q 017539 33 YHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDK-EKDS 111 (369)
Q Consensus 33 ~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~-~rd~ 111 (369)
+.-++++..|..+-.|. ++.++. +.|-+|+||-.++.|.+ |. .+..
T Consensus 16 si~nal~hlg~~i~~v~---~P~DI~----~a~rLIfPGVGnfg~~~--------------------------D~L~~~G 62 (541)
T KOG0623|consen 16 SIRNALRHLGFSIKDVQ---TPGDIL----NADRLIFPGVGNFGPAM--------------------------DVLNRTG 62 (541)
T ss_pred HHHHHHHhcCceeeecc---Cchhhc----cCceEeecCcccchHHH--------------------------HHHhhhh
Confidence 34567888898877665 333443 69999999965544321 11 1222
Q ss_pred HHHHHHHHHHHcCCCEEEEeHHHHHHHHHh-------CCeeeeccchhhhccCCC-CcceeecccCCCCCceeEEEEcCC
Q 017539 112 IELRLAKLCLERNIPYLGICRGSQVLNVAC-------GGTLYQDIEKEVSRKCPE-NQRVVHIDYDNYDGHRHVVKVVKD 183 (369)
Q Consensus 112 ~e~~li~~~~e~~iPiLGIClG~QlL~~a~-------GG~l~~~~~~e~g~~~~~-~~~v~H~~~~~~~~~~~~V~i~~~ 183 (369)
+ ...+++.++.++|++|||.|.|+|.... |-.+...+-.. ++. ...|+|++|+ .+.+.++
T Consensus 63 f-~eplr~YiesgkPfmgicvGlQaLF~gSvE~p~skGLgvipg~v~R----FD~s~k~VPhIGWN-------sc~v~sd 130 (541)
T KOG0623|consen 63 F-AEPLRKYIESGKPFMGICVGLQALFDGSVENPPSKGLGVIPGIVGR----FDASAKIVPHIGWN-------SCQVGSD 130 (541)
T ss_pred h-HHHHHHHHhcCCCeEeehhhHHHHhcccccCCCcCcccccccceec----ccCCCCcCCccccc-------ccccCCc
Confidence 3 3556677788999999999999997521 11122221112 322 3358999885 4556666
Q ss_pred CcchhhhhccccccceEEEEecccchhhc-cc-CCCeEEEEEcCCC---cEEEEEeCCCCCCCCCCcEEEEcccCCccCC
Q 017539 184 TPLHDWFKDSLEEEKMEIWVNSYHHQGVK-RL-AQRFVPMAFAPDG---LIEGFYDPDAYNPAEGKFIMGLQFHPERMRR 258 (369)
Q Consensus 184 s~L~~~~~~~~~~~~~~~~vns~H~~~V~-~L-~~g~~vlA~s~dg---~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~ 258 (369)
+.++...+ .++.|+|+||-..... .+ +++|+ +|++..| +|.+|.. .+++++|||||++..
T Consensus 131 ~effg~~p-----~~~~YFVHSyl~~ek~~~len~~wk-iat~kYG~E~Fi~ai~k---------nN~~AtQFHPEKSG~ 195 (541)
T KOG0623|consen 131 SEFFGDVP-----NRHVYFVHSYLNREKPKSLENKDWK-IATCKYGSESFISAIRK---------NNVHATQFHPEKSGE 195 (541)
T ss_pred ccccccCC-----CceEEEEeeecccccccCCCCCCce-EeeeccCcHHHHHHHhc---------CceeeEecccccccc
Confidence 76655444 4578899988544433 34 35577 5777666 7888875 469999999999876
Q ss_pred CCCCCCCCCCchHHHHHHHH
Q 017539 259 PDSDEFDYPGCPSAYQEFVK 278 (369)
Q Consensus 259 ~~~~~~~~~~~~~lf~~Fv~ 278 (369)
.+ ...+++|+.
T Consensus 196 aG---------L~vl~~FL~ 206 (541)
T KOG0623|consen 196 AG---------LSVLRRFLH 206 (541)
T ss_pred hh---------HHHHHHHHh
Confidence 43 467888886
No 83
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=99.39 E-value=9.6e-12 Score=111.03 Aligned_cols=183 Identities=19% Similarity=0.203 Sum_probs=108.0
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHHCC-CEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCCh
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYG-AVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSP 89 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~G-a~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~ 89 (369)
++|||+.-... -+.|+++++++| +.++.|.. +++ ++.+||||||||++
T Consensus 1 m~IGVLalQG~---------v~EH~~~l~~~~~~e~~~Vk~---~~d----L~~~d~LIiPGGES--------------- 49 (194)
T COG0311 1 MKIGVLALQGA---------VEEHLEALEKAGGAEVVEVKR---PED----LEGVDGLIIPGGES--------------- 49 (194)
T ss_pred CeEEEEEeccc---------HHHHHHHHHhhcCCceEEEcC---HHH----hccCcEEEecCccH---------------
Confidence 36888875532 146899999995 99998863 334 34799999999963
Q ss_pred hHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCC-eeeeccchhhhccCCCCcceeeccc
Q 017539 90 EELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGG-TLYQDIEKEVSRKCPENQRVVHIDY 168 (369)
Q Consensus 90 ~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG-~l~~~~~~e~g~~~~~~~~v~H~~~ 168 (369)
+-|.++- ++...+.-++...+.++|+||+|.||-+|+...-+ .-. +++
T Consensus 50 ---TTi~rL~---------~~~gl~e~l~~~~~~G~Pv~GTCAGlIlLakei~~~~~~-----------------~~L-- 98 (194)
T COG0311 50 ---TTIGRLL---------KRYGLLEPLREFIADGLPVFGTCAGLILLAKEILDGPEQ-----------------PLL-- 98 (194)
T ss_pred ---HHHHHHH---------HHcCcHHHHHHHHHcCCceEEechhhhhhhhhhcCCCCC-----------------ccc--
Confidence 1222221 11122456777788899999999999999975432 110 111
Q ss_pred CCCCCceeEEEEcCCC--cchhhhhcccc----ccceEEEEecccchhhcccCCCeEEEEEcCCCcEEEEEeCCCCCCCC
Q 017539 169 DNYDGHRHVVKVVKDT--PLHDWFKDSLE----EEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAE 242 (369)
Q Consensus 169 ~~~~~~~~~V~i~~~s--~L~~~~~~~~~----~~~~~~~vns~H~~~V~~L~~g~~vlA~s~dg~Veaie~~~~~~~~~ 242 (369)
+..++++..+. +-.+.|...+. .....+.....-...+.+.+++.+++|+-++ .+-+++.
T Consensus 99 -----g~mdi~V~RNAfGRQ~dSFe~~~di~~~~~~~~~~avFIRAP~I~~vg~~V~vLa~l~~-~iVav~q-------- 164 (194)
T COG0311 99 -----GLLDVTVRRNAFGRQVDSFETELDIEGFGLPFPFPAVFIRAPVIEEVGDGVEVLATLDG-RIVAVKQ-------- 164 (194)
T ss_pred -----ceEEEEEEccccccccccceeeEEeecccCCCcceEEEEEcceeehhcCcceEeeeeCC-EEEEEEe--------
Confidence 12344444332 11111111000 0000111111234455667778999998765 4555554
Q ss_pred CCcEEEEcccCCccCCCCCCCCCCCCchHHHHHHHHHHH
Q 017539 243 GKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVI 281 (369)
Q Consensus 243 ~~~i~GvQFHPE~~~~~~~~~~~~~~~~~lf~~Fv~a~~ 281 (369)
.+++|+-||||.+.+ .++.+.|++.+.
T Consensus 165 -gn~LatsFHPELT~D-----------~r~Heyf~~~v~ 191 (194)
T COG0311 165 -GNILATSFHPELTDD-----------TRLHEYFLDMVL 191 (194)
T ss_pred -CCEEEEecCccccCC-----------ccHHHHHHHHhh
Confidence 469999999998753 256677776654
No 84
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=99.39 E-value=2.4e-12 Score=115.76 Aligned_cols=167 Identities=19% Similarity=0.224 Sum_probs=96.1
Q ss_pred hHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhH
Q 017539 32 EYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDS 111 (369)
Q Consensus 32 ~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~ 111 (369)
..|++.++++|+.++.|. .++++ +.+||||||||++ +-+.++- +..
T Consensus 9 ~EH~~~l~~lg~~~~~Vr---~~~dL----~~~dgLIiPGGES------------------Tti~~ll---------~~~ 54 (188)
T PF01174_consen 9 REHIRMLERLGAEVVEVR---TPEDL----EGLDGLIIPGGES------------------TTIGKLL---------RRY 54 (188)
T ss_dssp HHHHHHHHHTTSEEEEE----SGGGG----TT-SEEEE-SS-H------------------HHHHHHH---------HHT
T ss_pred HHHHHHHHHcCCCeEEeC---CHHHH----ccCCEEEECCCcH------------------HHHHHHH---------HHc
Confidence 468999999999999886 33443 4799999999962 1111110 111
Q ss_pred HHHHHHHHHHHcC-CCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeecccCCCCCceeEEEEcCCCcchhhh
Q 017539 112 IELRLAKLCLERN-IPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKDTPLHDWF 190 (369)
Q Consensus 112 ~e~~li~~~~e~~-iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~~~~~~V~i~~~s~L~~~~ 190 (369)
-....++.+...+ +|+||+|.||-+|+....+. .+. .+ +..++++..+. |
T Consensus 55 gL~~~l~~~~~~g~~Pv~GTCAGlIlLa~~v~~~-~q~---~L--------------------g~ldi~V~RNa-----f 105 (188)
T PF01174_consen 55 GLFEPLREFIRSGSKPVWGTCAGLILLAKEVEGQ-GQP---LL--------------------GLLDITVRRNA-----F 105 (188)
T ss_dssp THHHHHHHHHHTT--EEEEETHHHHHHEEEECSS-CCT---SS----------------------EEEEEETTT-----T
T ss_pred CCHHHHHHHHHcCCCceeehhHHHHHhhhhhhhc-ccc---cc--------------------cceeEEEEccc-----c
Confidence 2345677777777 99999999999998754433 110 11 13445554442 2
Q ss_pred hccccccc---------eEEEEecccchhhcccC--CCeEEEEEcCCCcEEEEEeCCCCCCCCCCcEEEEcccCCccCCC
Q 017539 191 KDSLEEEK---------MEIWVNSYHHQGVKRLA--QRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMRRP 259 (369)
Q Consensus 191 ~~~~~~~~---------~~~~vns~H~~~V~~L~--~g~~vlA~s~dg~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~ 259 (369)
|.+..+-. ..|..--.....|.+++ ++.++++..+ |.|-+++. .+++++-||||.+..
T Consensus 106 GrQ~~SFe~~l~i~~~~~~~~avFIRAP~I~~v~~~~~v~vla~~~-g~iVav~q---------gn~latsFHPELT~D- 174 (188)
T PF01174_consen 106 GRQLDSFEADLDIPGLGEPFPAVFIRAPVIEEVGSPEGVEVLAELD-GKIVAVRQ---------GNILATSFHPELTDD- 174 (188)
T ss_dssp CSSSCEEEEEEEETTTESEEEEEESS--EEEEE--TTTEEEEEEET-TEEEEEEE---------TTEEEESS-GGGSST-
T ss_pred ccchhcEEEEEEeecCCCcEEEEEcCCcEEEEeecccccccccccc-cceEEEEe---------cCEEEEEeCCcccCc-
Confidence 22211100 12232223344455565 7788888776 45556665 469999999998763
Q ss_pred CCCCCCCCCchHHHHHHHHHHH
Q 017539 260 DSDEFDYPGCPSAYQEFVKAVI 281 (369)
Q Consensus 260 ~~~~~~~~~~~~lf~~Fv~a~~ 281 (369)
+ .++.+.|++.+.
T Consensus 175 -~--------~r~H~yFl~~v~ 187 (188)
T PF01174_consen 175 -D--------TRIHEYFLEMVV 187 (188)
T ss_dssp -H--------CHHHHHHHHHHC
T ss_pred -h--------hHHHHHHHHHhh
Confidence 1 278899998764
No 85
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=99.38 E-value=7.8e-12 Score=117.88 Aligned_cols=178 Identities=22% Similarity=0.245 Sum_probs=103.4
Q ss_pred HHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhHH
Q 017539 33 YHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSI 112 (369)
Q Consensus 33 ~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~ 112 (369)
.++++++++|+.+++++.....+. ...++.+|||+||||.. |++... .......+..
T Consensus 14 ~~~~al~~aG~~v~~v~~~~~~~~-~~~l~~~d~liipGG~~-----~~d~l~----------------~~~~~~~~~~- 70 (238)
T cd01740 14 DMAYAFELAGFEAEDVWHNDLLAG-RKDLDDYDGVVLPGGFS-----YGDYLR----------------AGAIAAASPL- 70 (238)
T ss_pred HHHHHHHHcCCCEEEEeccCCccc-cCCHhhCCEEEECCCCC-----cccccc----------------cccccccChh-
Confidence 478899999999999986432111 12355799999999963 222211 0000111111
Q ss_pred HHHHHHHHHHcCCCEEEEeHHHHHHHHH--hCCeeeeccchhhhccCCCCcceeecccCCCCCceeEEEEcC-CCcchhh
Q 017539 113 ELRLAKLCLERNIPYLGICRGSQVLNVA--CGGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVK-DTPLHDW 189 (369)
Q Consensus 113 e~~li~~~~e~~iPiLGIClG~QlL~~a--~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~~~~~~V~i~~-~s~L~~~ 189 (369)
...+++.+.+.++|+||||.|+|+|+.+ ++|++......++.- . + .+.+..+++.. ++.+.+.
T Consensus 71 ~~~~l~~~~~~g~pvlGIC~G~QlL~~~gll~g~~~~~~~~~~~~--~---------~---~~~~v~~~v~~~~si~t~~ 136 (238)
T cd01740 71 LMEEVKEFAERGGLVLGICNGFQILVELGLLPGALIRNKGLKFIC--R---------W---QNRFVTLRVENNDSPFTKG 136 (238)
T ss_pred HHHHHHHHHhCCCeEEEECcHHHHHHHcCCCccccccCCCCceec--c---------c---cCceEEEEEcCCCCceecC
Confidence 4678888999999999999999999997 777764432222210 0 0 00123333332 3444443
Q ss_pred hhccccccceEEEEecccchh--------hccc-CCCeEE------------EEEcCCC---cEEEEEeCCCCCCCCCCc
Q 017539 190 FKDSLEEEKMEIWVNSYHHQG--------VKRL-AQRFVP------------MAFAPDG---LIEGFYDPDAYNPAEGKF 245 (369)
Q Consensus 190 ~~~~~~~~~~~~~vns~H~~~--------V~~L-~~g~~v------------lA~s~dg---~Veaie~~~~~~~~~~~~ 245 (369)
+. ....+.++..|+++ +.+| ..+-.+ --++++| .|+||-.++ .+
T Consensus 137 ~~-----~g~~l~~~vaHgeG~~~~~~~~~~~l~~~~~i~~y~~~~~~~~~~yp~NPnGs~~~iAgi~~~~-------Gr 204 (238)
T cd01740 137 YM-----EGEVLRIPVAHGEGRFYADDETLAELEENGQIAQYVDDDGNVTERYPANPNGSLDGIAGICNED-------GR 204 (238)
T ss_pred CC-----CCCEEEEEeECCceeeEcCHHHHHHHHHCCCEEEEEcCCCCccccCCCCCCCChhcceEEEcCC-------CC
Confidence 21 11345666667653 1111 111111 0014566 489999886 78
Q ss_pred EEEEcccCCccCCC
Q 017539 246 IMGLQFHPERMRRP 259 (369)
Q Consensus 246 i~GvQFHPE~~~~~ 259 (369)
++|+..||||...+
T Consensus 205 vlglMphPer~~~~ 218 (238)
T cd01740 205 VLGMMPHPERAVEP 218 (238)
T ss_pred EEEEcCChHHcccc
Confidence 99999999998754
No 86
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.37 E-value=2.5e-11 Score=111.83 Aligned_cols=201 Identities=21% Similarity=0.232 Sum_probs=115.6
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcC-CCCEEEECCCCCCCCCCccccCCCCC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFE-PIHGVLLCEGEDIDPSLYEAETSNLS 88 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~-~~DGlll~GG~didp~~y~~~~~~~~ 88 (369)
+|+|+|+--+..... + .-..+++.+|+.++.|..... .+. .+|+|++|||-+ |++....
T Consensus 2 ~~kvaVi~fpGtN~d--~-----d~~~A~~~aG~~~~~V~~~d~------~~~~~~d~vv~pGGFS-----yGDyLr~-- 61 (231)
T COG0047 2 RPKVAVLRFPGTNCD--Y-----DMAAAFERAGFEAEDVWHSDL------LLGRDFDGVVLPGGFS-----YGDYLRA-- 61 (231)
T ss_pred CceEEEEEcCCcCch--H-----HHHHHHHHcCCCceEEEeeec------ccCCCccEEEEcCCCC-----cccccCc--
Confidence 689999865543211 1 124567789999998875321 122 599999999953 4432210
Q ss_pred hhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHH--hCCeeeeccchhhhccCCCCcceeec
Q 017539 89 PEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVA--CGGTLYQDIEKEVSRKCPENQRVVHI 166 (369)
Q Consensus 89 ~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a--~GG~l~~~~~~e~g~~~~~~~~v~H~ 166 (369)
-||.+ . .-.+.-++++.+.++|+||||-|+|+|..+ +.|.+.+.....+-
T Consensus 62 ----Gaiaa-------~-----~~v~~~v~~~a~~g~~vLGICNGfQiL~e~gLlPGal~~N~s~~F~------------ 113 (231)
T COG0047 62 ----GAIAA-------I-----APVMDEVREFAEKGKPVLGICNGFQILSEAGLLPGALTRNESLRFE------------ 113 (231)
T ss_pred ----chHHh-------h-----HHHHHHHHHHHHCCCeEEEEcchhHHHHHcCcCCcceecCCCCceE------------
Confidence 01211 1 223456677778999999999999999964 34555443221110
Q ss_pred ccCCCCCceeEEEEc-CCCcchhhhhccccccceEEEEecccchh--------hcccCC-CeEEEE-----------EcC
Q 017539 167 DYDNYDGHRHVVKVV-KDTPLHDWFKDSLEEEKMEIWVNSYHHQG--------VKRLAQ-RFVPMA-----------FAP 225 (369)
Q Consensus 167 ~~~~~~~~~~~V~i~-~~s~L~~~~~~~~~~~~~~~~vns~H~~~--------V~~L~~-g~~vlA-----------~s~ 225 (369)
..+..+++. .+|++.+.|.. ...+.+.-.|+.+ +++|-. +-.+.- +++
T Consensus 114 ------cr~v~l~V~~~~t~ft~~~~~-----g~~i~ipVAHgEGr~~~~~~~l~~l~~ngqvvfrY~d~~G~~~~~~NP 182 (231)
T COG0047 114 ------CRWVYLRVENNNTPFTSGYEG-----GEVIPIPVAHGEGRYYADDETLAELEENGQVVFRYVDNNGETEEYANP 182 (231)
T ss_pred ------EEEEEEEEecCCCHHHHhcCC-----CceEEEEEeecceeEEccHHHHHHHhhCCeEEEEEecCCCceeeeeCC
Confidence 113344544 35667677752 2345555556543 122222 222222 245
Q ss_pred CC---cEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCCchHHHHHHHHH
Q 017539 226 DG---LIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKA 279 (369)
Q Consensus 226 dg---~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~~~~~~~~lf~~Fv~a 279 (369)
+| -|++|..++ .+++|+.-||||.....-..- ...++|++.++.
T Consensus 183 NGS~~~IaGI~n~~-------G~V~gmMPHPERa~~~~~g~~---Dg~~lF~s~~~~ 229 (231)
T COG0047 183 NGSVNGIAGITNED-------GNVLGMMPHPERASESLLGGE---DGLRLFRSARKY 229 (231)
T ss_pred CCChhhceeEEcCC-------CCEEEecCCchhhhhcccCCc---hHHHHHHHHHHh
Confidence 66 588888875 789999999999775221110 135677666554
No 87
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=99.05 E-value=4.8e-09 Score=100.09 Aligned_cols=105 Identities=22% Similarity=0.196 Sum_probs=58.0
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCCh
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSP 89 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~ 89 (369)
+|+|+|+.-+.... +..-+.+++.+|+.+.+|.... .-.-...++.+|+|+||||.+ |++... ++
T Consensus 1 kpkV~Vl~~pGtNc-------e~e~~~A~~~aG~~~~~v~~~d-l~~~~~~l~~~~~lvipGGFS-----~gD~l~--sg 65 (259)
T PF13507_consen 1 KPKVAVLRFPGTNC-------ERETAAAFENAGFEPEIVHIND-LLSGESDLDDFDGLVIPGGFS-----YGDYLR--SG 65 (259)
T ss_dssp --EEEEEE-TTEEE-------HHHHHHHHHCTT-EEEEEECCH-HHTTS--GCC-SEEEE-EE-G-----GGGTTS--TT
T ss_pred CCEEEEEECCCCCC-------HHHHHHHHHHcCCCceEEEEEe-cccccCchhhCcEEEECCccC-----ccccch--HH
Confidence 58999997664321 1234678999999999886532 111123567899999999953 444331 00
Q ss_pred hHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHc-CCCEEEEeHHHHHHHHH
Q 017539 90 EELEEIRRLHTSDTAIDKEKDSIELRLAKLCLER-NIPYLGICRGSQVLNVA 140 (369)
Q Consensus 90 ~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~-~iPiLGIClG~QlL~~a 140 (369)
.-+ ..++.- ..-.+..++.++++ +.|+||||-|+|+|...
T Consensus 66 ~~~--a~~~~~---------~~~~~~~i~~f~~~~g~~vLGIcNGfQiL~~~ 106 (259)
T PF13507_consen 66 AIA--AARLLF---------NSPLMDAIREFLERPGGFVLGICNGFQILVEL 106 (259)
T ss_dssp HHH--HHHHCC---------SCCCHHHHHHHHHCTT-EEEEECHHHHHHCCC
T ss_pred HHH--HHHhhc---------cHHHHHHHHHHHhcCCCeEEEEchHhHHHHHh
Confidence 100 000000 00114567777887 99999999999999874
No 88
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=98.98 E-value=1.3e-08 Score=114.12 Aligned_cols=226 Identities=20% Similarity=0.166 Sum_probs=120.4
Q ss_pred CCCcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCC--------ChhhhhhhcCCCCEEEECCCCCCCCCC
Q 017539 8 VILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS--------GVHMLLDSFEPIHGVLLCEGEDIDPSL 79 (369)
Q Consensus 8 ~~~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~--------~~~~l~~~l~~~DGlll~GG~didp~~ 79 (369)
..+|+|+|+.-+...... .-..+++.+|+.+..+.... +.+.+...++.+++|++|||-+
T Consensus 975 ~~kpkvaIl~~pGtNce~-------d~a~Af~~aG~~~~~v~~~dl~~~~i~~s~~~~~~~l~~~~~l~~pGGFS----- 1042 (1239)
T TIGR01857 975 VEKPRVVIPVFPGTNSEY-------DSAKAFEKEGAEVNLVIFRNLNEEALVESVETMVDEIDKSQILMLPGGFS----- 1042 (1239)
T ss_pred CCCCeEEEEECCCCCCHH-------HHHHHHHHcCCceEEEEEecCcccccccchhhhhcccccCcEEEEcCccC-----
Confidence 357999999766543221 23557888998887765322 1223334467899999999953
Q ss_pred ccccCCCCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHH--h-CCeeeeccchhhhcc
Q 017539 80 YEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVA--C-GGTLYQDIEKEVSRK 156 (369)
Q Consensus 80 y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a--~-GG~l~~~~~~e~g~~ 156 (369)
|++.... ++- |+. ...+..-.+..++.+++++.++||||-|+|+|... + ++.+..... ...
T Consensus 1043 yGD~l~~-~~~---~~a---------a~~~n~~~~~~~~~f~~~d~~~LGICNGfQ~L~~lGLlP~~~~~~~~~-~~p-- 1106 (1239)
T TIGR01857 1043 AGDEPDG-SAK---FIA---------AILRNPKVRVAIDSFLARDGLILGICNGFQALVKSGLLPYGNIEAANE-TSP-- 1106 (1239)
T ss_pred cccccch-hHH---HHH---------HHhhChHHHHHHHHHHhCCCcEEEechHHHHHHHcCCCcCcccccccc-CCc--
Confidence 4443310 000 110 01111122455666667899999999999999884 1 122111100 000
Q ss_pred CCCCcceeecccCCCCCceeEEEEcC-CCcchhhhhccccccceEEEEecccchh--------hccc-CCCeEEEEE---
Q 017539 157 CPENQRVVHIDYDNYDGHRHVVKVVK-DTPLHDWFKDSLEEEKMEIWVNSYHHQG--------VKRL-AQRFVPMAF--- 223 (369)
Q Consensus 157 ~~~~~~v~H~~~~~~~~~~~~V~i~~-~s~L~~~~~~~~~~~~~~~~vns~H~~~--------V~~L-~~g~~vlA~--- 223 (369)
...|.....+...+..+++.+ .|++...+.. ...+.+...|+.+ +++| .++..++-+
T Consensus 1107 -----~l~~N~s~rf~~r~v~~~v~~~~s~~~~~~~~-----g~~~~ipvaHgEGrf~~~~~~l~~l~~~~qva~rYvd~ 1176 (1239)
T TIGR01857 1107 -----TLTYNDINRHVSKIVRTRIASTNSPWLSGVSV-----GDIHAIPVSHGEGRFVASDEVLAELRENGQIATQYVDF 1176 (1239)
T ss_pred -----eeeecCCCCeEEeeeEEEECCCCChhHhcCCC-----CCEEEEEeEcCCcceecCHHHHHHHHHCCcEEEEEeCC
Confidence 011111111111234455543 4666666531 2345666667653 1222 223333333
Q ss_pred ----------cCCC---cEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCCchHHHHHHHH
Q 017539 224 ----------APDG---LIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVK 278 (369)
Q Consensus 224 ----------s~dg---~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~~~~~~~~lf~~Fv~ 278 (369)
+++| -|+||-.++ .+++|..-||||...+.-.+.+-.....+|++.++
T Consensus 1177 ~g~~t~~~p~NPNGS~~~IaGi~s~d-------Grvlg~MpHpER~~~~~~~~~~g~~~~~iF~~~v~ 1237 (1239)
T TIGR01857 1177 NGKPSMDSKYNPNGSSLAIEGITSPD-------GRIFGKMGHSERYGDGLFKNIPGNKDQHLFASGVK 1237 (1239)
T ss_pred CCCcccCCCCCCCCChhhhhEeECCC-------CCEEEECCCcccccCcccCCCCchhhhHHHHHHHh
Confidence 4566 588888886 78999999999986532211100012577777664
No 89
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=98.63 E-value=6.6e-07 Score=101.34 Aligned_cols=210 Identities=17% Similarity=0.216 Sum_probs=108.8
Q ss_pred CCcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCC
Q 017539 9 ILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLS 88 (369)
Q Consensus 9 ~~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~ 88 (369)
.+|+|+|+.-+...... .-+.++..+|+.+..|....-.+. ...++.++||++|||-+ |++... +
T Consensus 1036 ~~pkVaVl~~pGtN~~~-------e~~~Af~~aGf~~~~V~~~dl~~~-~~~L~~~~glv~pGGFS-----yGD~l~--s 1100 (1307)
T PLN03206 1036 SKPKVAIIREEGSNGDR-------EMAAAFYAAGFEPWDVTMSDLLNG-RISLDDFRGIVFVGGFS-----YADVLD--S 1100 (1307)
T ss_pred CCCeEEEEECCCCCCHH-------HHHHHHHHcCCceEEEEeeecccc-cccccceeEEEEcCcCC-----Cccccc--h
Confidence 47999999766543211 235678889988877764321111 22356899999999953 444332 1
Q ss_pred hhHHHHHHhhcCCCCccCchhhHHHHHHHHHHH-HcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCC-cceeec
Q 017539 89 PEELEEIRRLHTSDTAIDKEKDSIELRLAKLCL-ERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPEN-QRVVHI 166 (369)
Q Consensus 89 ~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~-e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~-~~v~H~ 166 (369)
+.- |+.+ ..+..-.+..++.++ +.+.++||||-|+|+|... |---+......++....+. -...+.
T Consensus 1101 g~~--wa~~---------i~~n~~~~~~~~~f~~~~d~~~LGICNGfQiL~~l-gllPg~~~~~~~~~~~~e~~p~l~~N 1168 (1307)
T PLN03206 1101 AKG--WAGS---------IRFNEPLLQQFQEFYNRPDTFSLGVCNGCQLMALL-GWVPGPQVGGGLGAGGDPSQPRFVHN 1168 (1307)
T ss_pred HHH--HHHH---------HHhChHHHHHHHHHHhCCCceEEEEcHHHHHHHHc-CCCCCCccccccccccccCCceeeec
Confidence 100 1100 001111234556666 4589999999999999885 2111100000000000000 001111
Q ss_pred ccCCCCCceeEEEEcC-CCcchhhhhccccccceEEEEecccchhh---------ccc-CCCeEEEEE------------
Q 017539 167 DYDNYDGHRHVVKVVK-DTPLHDWFKDSLEEEKMEIWVNSYHHQGV---------KRL-AQRFVPMAF------------ 223 (369)
Q Consensus 167 ~~~~~~~~~~~V~i~~-~s~L~~~~~~~~~~~~~~~~vns~H~~~V---------~~L-~~g~~vlA~------------ 223 (369)
.-..+...+..+++.+ .+.+++.+.+ ..+.++..|+.+= .+| .++..++-+
T Consensus 1169 ~s~rfesr~v~v~V~~s~si~l~~~~G------~~l~i~vaHgEGr~~~~~~~~l~~l~~~gqva~rY~d~~g~~t~~yP 1242 (1307)
T PLN03206 1169 ESGRFECRFTSVTIEDSPAIMLKGMEG------STLGVWAAHGEGRAYFPDESVLDEVLKSNLAPVRYCDDDGEPTEQYP 1242 (1307)
T ss_pred CCCCeEEeceEEEECCCCChhhcccCC------CEEEEEEEcCCCCeecCCHHHHHHHHhcCeEEEEEeCCCCCccCCCC
Confidence 1111122345566643 4566665542 2355555565421 112 233333333
Q ss_pred -cCCC---cEEEEEeCCCCCCCCCCcEEEEcccCCccCC
Q 017539 224 -APDG---LIEGFYDPDAYNPAEGKFIMGLQFHPERMRR 258 (369)
Q Consensus 224 -s~dg---~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~ 258 (369)
+++| -|+||-.++ .+++|+..||||...
T Consensus 1243 ~NPNGS~~~IAGi~s~d-------GRvlgmMpHPER~~~ 1274 (1307)
T PLN03206 1243 FNPNGSPLGIAALCSPD-------GRHLAMMPHPERCFL 1274 (1307)
T ss_pred CCCCCChhhceeeECCC-------CCEEEEcCCHHHhhh
Confidence 4566 588999887 789999999999764
No 90
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=98.59 E-value=2.9e-07 Score=104.59 Aligned_cols=202 Identities=17% Similarity=0.185 Sum_probs=105.8
Q ss_pred CCCcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCC
Q 017539 8 VILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNL 87 (369)
Q Consensus 8 ~~~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~ 87 (369)
..+|+|+|+.-+...... .-..++..+|+.+..|....-... ...++.++||++|||.+ |++...
T Consensus 1053 ~~~p~vail~~pG~N~~~-------e~~~Af~~aGf~~~~v~~~dl~~~-~~~l~~~~~lv~~GGFS-----ygD~lg-- 1117 (1310)
T TIGR01735 1053 GVRPKVAILREQGVNGDR-------EMAAAFDRAGFEAWDVHMSDLLAG-RVHLDEFRGLAACGGFS-----YGDVLG-- 1117 (1310)
T ss_pred CCCceEEEEECCCCCCHH-------HHHHHHHHhCCCcEEEEEeccccC-CcchhheeEEEEcCCCC-----Cccchh--
Confidence 347999999766443211 234578889988887764321110 11356799999999953 444321
Q ss_pred ChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHH-HcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeec
Q 017539 88 SPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCL-ERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHI 166 (369)
Q Consensus 88 ~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~-e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~ 166 (369)
++.- |+.+ ..+..-.+..++.+. +.+.++||||-|+|+|....|-- .... ... . ..|.
T Consensus 1118 sg~~--~a~~---------i~~~~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~~~gll--p~~~-~~p-~------l~~N 1176 (1310)
T TIGR01735 1118 AGKG--WAKS---------ILFNPRLRDQFQAFFKRPDTFSLGVCNGCQMLSNLLEWI--PGTE-NWP-H------FVRN 1176 (1310)
T ss_pred HHHH--HHHH---------HHhChHHHHHHHHHHhCCCceEEEecHHHHHHHHHhCcC--CCCC-CCc-e------eeec
Confidence 0110 1100 001111234455555 67899999999999999433211 1000 000 0 0010
Q ss_pred ccCCCCCceeEEEEcC-CCcchhhhhccccccceEEEEecccchh---h------ccc-CCCeEEEEE------------
Q 017539 167 DYDNYDGHRHVVKVVK-DTPLHDWFKDSLEEEKMEIWVNSYHHQG---V------KRL-AQRFVPMAF------------ 223 (369)
Q Consensus 167 ~~~~~~~~~~~V~i~~-~s~L~~~~~~~~~~~~~~~~vns~H~~~---V------~~L-~~g~~vlA~------------ 223 (369)
.-..+...+..+++.+ .+.+++.+.+ ..+.++..|+.+ + .+| .++..++-+
T Consensus 1177 ~s~~fe~r~~~~~v~~s~s~~~~~~~g------~~l~~~vaHgEGr~~~~~~~~~~~l~~~~~ia~~Y~d~~g~~~~~yp 1250 (1310)
T TIGR01735 1177 NSERFEARVASVRVGESPSIMLRGMAG------SRLPVAVAHGEGYAAFSSPELQAQADASGLAALRYIDDDGNPTEAYP 1250 (1310)
T ss_pred CCCCeEEeeeEEEECCCCChhhhhcCC------CEEEEEeEcCCCCeeeCCHHHHHHHHhCCeEEEEEeCCCCCccCCCC
Confidence 0001112245555543 4566655532 234555555442 1 112 223333333
Q ss_pred -cCCC---cEEEEEeCCCCCCCCCCcEEEEcccCCccCC
Q 017539 224 -APDG---LIEGFYDPDAYNPAEGKFIMGLQFHPERMRR 258 (369)
Q Consensus 224 -s~dg---~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~ 258 (369)
+++| -|+||-.++ .+++|+..||||...
T Consensus 1251 ~NPNGS~~~IaGi~s~d-------Grvl~~MpHPEr~~~ 1282 (1310)
T TIGR01735 1251 LNPNGSPGGIAGITSCD-------GRVTIMMPHPERVFR 1282 (1310)
T ss_pred CCCCCChhcceEeECCC-------CCEEEEcCCHHHhhh
Confidence 4566 488999887 789999999999764
No 91
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=98.58 E-value=9.4e-07 Score=100.71 Aligned_cols=201 Identities=18% Similarity=0.233 Sum_probs=107.2
Q ss_pred CCcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCC
Q 017539 9 ILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLS 88 (369)
Q Consensus 9 ~~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~ 88 (369)
.+|+|+|+.-+...... .-..++..+|+.+..|....-... ...++.++||++|||-+ |++... +
T Consensus 1034 ~~pkv~il~~pG~N~~~-------e~~~Af~~aG~~~~~v~~~dl~~~-~~~l~~~~~l~~~GGFS-----~gD~lg--s 1098 (1290)
T PRK05297 1034 ARPKVAILREQGVNSHV-------EMAAAFDRAGFDAIDVHMSDLLAG-RVTLEDFKGLVACGGFS-----YGDVLG--A 1098 (1290)
T ss_pred CCCeEEEEECCCCCCHH-------HHHHHHHHcCCCeEEEEeecCcCC-CCChhhCcEEEECCccC-----Ccccch--H
Confidence 46899999766443211 235678899998877764321100 12356899999999953 444321 0
Q ss_pred hhHHHHHHhhcCCCCccCchhhHHHHHHHHHHH-HcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeecc
Q 017539 89 PEELEEIRRLHTSDTAIDKEKDSIELRLAKLCL-ERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHID 167 (369)
Q Consensus 89 ~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~-e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~ 167 (369)
+.- |+. ...+..-.+..++.++ +.+.++||||-|+|+|... | .+.+... ... ...+..
T Consensus 1099 g~~--~a~---------~~~~n~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~l-g-~l~p~~~-~~p-------~l~~N~ 1157 (1290)
T PRK05297 1099 GEG--WAK---------SILFNPRLRDQFEAFFARPDTFALGVCNGCQMMSNL-K-EIIPGAE-HWP-------RFVRNR 1157 (1290)
T ss_pred HHH--HHH---------HhhccHHHHHHHHHHHhCCCceEEEEcHHHHHHHHh-C-CccCCCC-CCC-------eEeecC
Confidence 000 110 0001111234455544 6789999999999999985 3 2211110 000 001110
Q ss_pred cCCCCCceeEEEEcC-CCcchhhhhccccccceEEEEecccchh--------hccc-CCCeEEEEE-------------c
Q 017539 168 YDNYDGHRHVVKVVK-DTPLHDWFKDSLEEEKMEIWVNSYHHQG--------VKRL-AQRFVPMAF-------------A 224 (369)
Q Consensus 168 ~~~~~~~~~~V~i~~-~s~L~~~~~~~~~~~~~~~~vns~H~~~--------V~~L-~~g~~vlA~-------------s 224 (369)
-..+...+..+++.+ .+++++.+.+ ..+.++..|+.+ ..+| .++..++-+ +
T Consensus 1158 s~rfesr~~~~~v~~~~s~~~~~~~g------~~l~~~vaHgeGr~~~~~~~~~~l~~~~~ia~~Y~d~~g~~~~~yp~N 1231 (1290)
T PRK05297 1158 SEQFEARFSLVEVQESPSIFLQGMAG------SRLPIAVAHGEGRAEFPDAHLAALEAKGLVALRYVDNHGQVTETYPAN 1231 (1290)
T ss_pred CCCeEEeeeEEEECCCCChhHhhcCC------CEEEEEEEcCcccEEcCHHHHHHHHHCCcEEEEEECCCCCcccCCCCC
Confidence 011112244555543 4666666532 235555556542 1112 223333322 4
Q ss_pred CCC---cEEEEEeCCCCCCCCCCcEEEEcccCCccCC
Q 017539 225 PDG---LIEGFYDPDAYNPAEGKFIMGLQFHPERMRR 258 (369)
Q Consensus 225 ~dg---~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~ 258 (369)
++| -|+||-.++ .+++|+..||||...
T Consensus 1232 PNGS~~~IaGi~s~d-------GrvlglMpHPEr~~~ 1261 (1290)
T PRK05297 1232 PNGSPNGITGLTTAD-------GRVTIMMPHPERVFR 1261 (1290)
T ss_pred CCCChhcceEeECCC-------CCEEEEcCChHHhcc
Confidence 566 588998887 789999999999765
No 92
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=98.58 E-value=2e-07 Score=85.58 Aligned_cols=83 Identities=20% Similarity=0.265 Sum_probs=57.8
Q ss_pred ccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCc
Q 017539 28 DFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDK 107 (369)
Q Consensus 28 ~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~ 107 (369)
.|.-+.++++|+++|+.++++....+ +. +..+|+|+||||. +..+ .++++
T Consensus 10 ~f~y~e~~~~l~~~G~~v~~~s~~~~-~~----l~~~D~lilPGG~---~~~~-----------~~~L~----------- 59 (198)
T cd03130 10 NFYYPENLELLEAAGAELVPFSPLKD-EE----LPDADGLYLGGGY---PELF-----------AEELS----------- 59 (198)
T ss_pred ccccHHHHHHHHHCCCEEEEECCCCC-CC----CCCCCEEEECCCc---hHHH-----------HHHHH-----------
Confidence 56667789999999999998864321 22 2359999999994 2111 11121
Q ss_pred hhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHh
Q 017539 108 EKDSIELRLAKLCLERNIPYLGICRGSQVLNVAC 141 (369)
Q Consensus 108 ~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~ 141 (369)
+..-....|+.+.++++|++|||.|+|+|....
T Consensus 60 -~~~~~~~~i~~~~~~g~pilgICgG~qlL~~~~ 92 (198)
T cd03130 60 -ANQSMRESIRAFAESGGPIYAECGGLMYLGESL 92 (198)
T ss_pred -hhHHHHHHHHHHHHcCCCEEEEcccHHHHHHHh
Confidence 111234677888888999999999999999876
No 93
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=98.52 E-value=2e-07 Score=85.18 Aligned_cols=76 Identities=22% Similarity=0.149 Sum_probs=53.0
Q ss_pred HHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhHHH
Q 017539 34 HLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIE 113 (369)
Q Consensus 34 ~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e 113 (369)
...++...|+.++++....+ ++.+|+|+|+||.+.. .++.+++ ..-.
T Consensus 15 l~~~~~~~G~~~~~~~~~~~-------~~~~d~lilpGg~~~~-------------~~~~~~~-------------~~~~ 61 (194)
T cd01750 15 LDPLAREPGVDVRYVEVPEG-------LGDADLIILPGSKDTI-------------QDLAWLR-------------KRGL 61 (194)
T ss_pred HHHHHhcCCceEEEEeCCCC-------CCCCCEEEECCCcchH-------------HHHHHHH-------------HcCH
Confidence 34567788999999875443 3469999999996321 1122221 0113
Q ss_pred HHHHHHHHHcCCCEEEEeHHHHHHHHHhC
Q 017539 114 LRLAKLCLERNIPYLGICRGSQVLNVACG 142 (369)
Q Consensus 114 ~~li~~~~e~~iPiLGIClG~QlL~~a~G 142 (369)
...|+.+.+.++|+||||.|||+|+..+.
T Consensus 62 ~~~i~~~~~~g~pvlgiC~G~qlL~~~~~ 90 (194)
T cd01750 62 AEAIKNYARAGGPVLGICGGYQMLGKYIV 90 (194)
T ss_pred HHHHHHHHHCCCcEEEECHHHHHhhhhcc
Confidence 46677788899999999999999998873
No 94
>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]
Probab=98.52 E-value=5.5e-07 Score=79.50 Aligned_cols=101 Identities=14% Similarity=0.176 Sum_probs=55.8
Q ss_pred CCCCCCCC-CCcEEEEecCcccCcCcccccchhHHHHHHH----H--CCCEEEEEcCCCChhhhhhhcCCCCEEEECCCC
Q 017539 1 MAAHDLSV-ILPRVLIVSRRSVRKNKFVDFVGEYHLDLIV----G--YGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGE 73 (369)
Q Consensus 1 ~~~~~~~~-~~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~----~--~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~ 73 (369)
|+.+-|+. ...+|||+.-...+ + .|++.+. . ++....+.+ +.+++++ +++||+|+|||+
T Consensus 1 mssasM~GKtn~VIGVLALQGAF-------i--EH~N~~~~c~~en~y~Ik~~~~t-VKT~~D~----aq~DaLIIPGGE 66 (226)
T KOG3210|consen 1 MSSASMTGKTNVVIGVLALQGAF-------I--EHVNHVEKCIVENRYEIKLSVMT-VKTKNDL----AQCDALIIPGGE 66 (226)
T ss_pred CCcccccCCcceEEeeeehhhHH-------H--HHHHHHHHhhccCcceEEEEEEe-ecCHHHH----hhCCEEEecCCc
Confidence 55555554 35789999866421 1 1233333 2 233333343 2344443 479999999997
Q ss_pred CCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcC-CCEEEEeHHHHHHHHHhC
Q 017539 74 DIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERN-IPYLGICRGSQVLNVACG 142 (369)
Q Consensus 74 didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~-iPiLGIClG~QlL~~a~G 142 (369)
.-.-+.- .+|+.+ ..-+..++.++ +|+||.|.||-.|+.-+.
T Consensus 67 ST~msli--------------------------a~~tgL-~d~L~~fVhn~~k~~WGTCAGmI~LS~ql~ 109 (226)
T KOG3210|consen 67 STAMSLI--------------------------AERTGL-YDDLYAFVHNPSKVTWGTCAGMIYLSQQLS 109 (226)
T ss_pred hhHHHHH--------------------------Hhhhhh-HHHHHHHhcCCCccceeechhhhhhhhhhc
Confidence 4211110 112221 22233344444 999999999999987653
No 95
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.40 E-value=1.8e-05 Score=81.40 Aligned_cols=94 Identities=18% Similarity=0.251 Sum_probs=64.5
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChh
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPE 90 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~ 90 (369)
++|+|+-.+ .+ .|--+.+++.+++.|+.++.+....+ +. +..+|+|+||||. |..|...-
T Consensus 246 ~~iava~d~-af-----~f~y~e~~~~L~~~g~~~~~~~~~~~-~~----l~~~D~lilpGG~---~~~~~~~l------ 305 (451)
T PRK01077 246 VRIAVARDA-AF-----NFYYPENLELLRAAGAELVFFSPLAD-EA----LPDCDGLYLGGGY---PELFAAEL------ 305 (451)
T ss_pred ceEEEEecC-cc-----cccHHHHHHHHHHCCCEEEEeCCcCC-CC----CCCCCEEEeCCCc---hhhHHHHH------
Confidence 588887554 22 34345578899999999998864322 12 3369999999994 22222211
Q ss_pred HHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHh
Q 017539 91 ELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVAC 141 (369)
Q Consensus 91 ~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~ 141 (369)
. +.......++.+.+.++|++|||.|+|+|...+
T Consensus 306 ----~-------------~~~~~~~~i~~~~~~g~~i~aiCgG~~~L~~~i 339 (451)
T PRK01077 306 ----A-------------ANTSMRASIRAAAAAGKPIYAECGGLMYLGESL 339 (451)
T ss_pred ----h-------------hCchhHHHHHHHHHcCCCEEEEcHHHHHHHhhh
Confidence 0 111235778888889999999999999999987
No 96
>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi. Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.
Probab=98.35 E-value=1.2e-05 Score=77.98 Aligned_cols=137 Identities=18% Similarity=0.143 Sum_probs=74.7
Q ss_pred CCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHH-HHHHh
Q 017539 63 PIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQV-LNVAC 141 (369)
Q Consensus 63 ~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~Ql-L~~a~ 141 (369)
.+||+|++|-| +.---|.+...+ +. ...++.++.+...+.|.||.|.|. |...+
T Consensus 98 ~~DglIITGAP-vE~l~Fe~V~YW-----------------------~E-l~~i~dwa~~~v~stl~iCWgAqAaLy~~y 152 (298)
T PF04204_consen 98 KFDGLIITGAP-VEQLPFEEVDYW-----------------------DE-LTEIFDWAKTHVTSTLFICWGAQAALYHFY 152 (298)
T ss_dssp -EEEEEE---T-TTTS-GGGSTTH-----------------------HH-HHHHHHHHHHHEEEEEEETHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-cCCCCcccCCcH-----------------------HH-HHHHHHHHHHcCCcchhhhHHHHHHHHHHc
Confidence 79999999986 122224443321 11 246788888888999999999999 66677
Q ss_pred CCeeeeccchhhhccCCCCcceeecccCCCCCceeEEE-EcCCCcchhhhhccccccceEEEEecccchhh--ccc--CC
Q 017539 142 GGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVK-VVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGV--KRL--AQ 216 (369)
Q Consensus 142 GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~~~~~~V~-i~~~s~L~~~~~~~~~~~~~~~~vns~H~~~V--~~L--~~ 216 (369)
|-.-.....+-+| ..+.+ +.+.++|.+++.+ .|.+...-+-.+ +.+ .+
T Consensus 153 GI~K~~l~~KlfG--------------------Vf~~~~~~~~~pLl~Gfdd-------~f~~PhSR~t~i~~~~i~~~~ 205 (298)
T PF04204_consen 153 GIPKYPLPEKLFG--------------------VFEHRVLDPDHPLLRGFDD-------TFFAPHSRYTEIDRDDIKKAP 205 (298)
T ss_dssp ----EEEEEEEEE--------------------EEEEEES-SS-GGGTT--S-------EEEEEEEEEEE--HHHHCT-T
T ss_pred CCCcccCCCccee--------------------ceeeeccCCCChhhcCCCc-------cccCCcccccCCCHHHHhcCC
Confidence 7764433222222 23333 2357899999964 444432222222 122 68
Q ss_pred CeEEEEEcCCCcEEEEEeCCCCCCCCCCcEEEEcccCCccCC
Q 017539 217 RFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMRR 258 (369)
Q Consensus 217 g~~vlA~s~dg~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~ 258 (369)
+++++|.+++.-+..+..++ ...+=+|.|||+...
T Consensus 206 ~L~vLa~s~~~G~~l~~~~d-------~r~vfi~GH~EYd~~ 240 (298)
T PF04204_consen 206 GLEVLAESEEAGVFLVASKD-------GRQVFITGHPEYDAD 240 (298)
T ss_dssp TEEEEEEETTTEEEEEEECC-------CTEEEE-S-TT--TT
T ss_pred CcEEEeccCCcceEEEEcCC-------CCEEEEeCCCccChh
Confidence 89999999887677777765 355668999999864
No 97
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=98.26 E-value=1.2e-06 Score=78.97 Aligned_cols=82 Identities=16% Similarity=0.054 Sum_probs=54.1
Q ss_pred HHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeec-cchhhhccCCCCcceeecccCCCCCceeEEEEcCCCcchhhhhc
Q 017539 114 LRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQD-IEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKDTPLHDWFKD 192 (369)
Q Consensus 114 ~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~-~~~e~g~~~~~~~~v~H~~~~~~~~~~~~V~i~~~s~L~~~~~~ 192 (369)
..++.++.+...|+||||.|+|....++||..... ..+.+| ..+..+....+|.+++++
T Consensus 88 ~~i~dwa~~~v~stl~iCWgaqaal~~~yGi~k~~~~~K~~G--------------------vf~~~~~~~hpL~~g~~d 147 (175)
T cd03131 88 TEILDWAKTHVTSTLFSCWAAMAALYYFYGIKKHQLPEKIFG--------------------VFPHTILEPHPLLRGLDD 147 (175)
T ss_pred HHHHHHHHHhCcchHHHHHHHHHHHHHHcCcccccCCCceEE--------------------EEEeeecCCCccccCCCC
Confidence 46778888889999999999999999999985332 222222 122223336788887753
Q ss_pred cccccceEEEEecccchhhcc----cCCCeEEEE
Q 017539 193 SLEEEKMEIWVNSYHHQGVKR----LAQRFVPMA 222 (369)
Q Consensus 193 ~~~~~~~~~~vns~H~~~V~~----L~~g~~vlA 222 (369)
.|.+.+.|+..|.+ ..+++++++
T Consensus 148 -------~F~~PhSR~~~v~~~~~~~~~~l~il~ 174 (175)
T cd03131 148 -------GFDVPHSRYAEVDREDIEEAAGLTILA 174 (175)
T ss_pred -------ceeecCcccccCCHHHHhhCCCCEEcc
Confidence 67777777666642 245566554
No 98
>PHA03366 FGAM-synthase; Provisional
Probab=98.20 E-value=1.8e-05 Score=90.36 Aligned_cols=105 Identities=13% Similarity=0.060 Sum_probs=61.9
Q ss_pred CCCcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCC-ChhhhhhhcCCCCEEEECCCCCCCCCCccccCCC
Q 017539 8 VILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS-GVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSN 86 (369)
Q Consensus 8 ~~~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~-~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~ 86 (369)
..+|+|.|+.-+..... ..-+.++..+|+.+..|.... ..... ++.++||+++||.+ |++....
T Consensus 1026 ~~~prVaIl~~pG~N~~-------~e~~~Af~~aGf~~~~v~~~dL~~~~~---l~~f~glv~~GGFS-----~gD~l~~ 1090 (1304)
T PHA03366 1026 DKRHRVAVLLLPGCPGP-------HALLAAFTNAGFDPYPVSIEELKDGTF---LDEFSGLVIGGSSG-----AEDSYTG 1090 (1304)
T ss_pred CCCCeEEEEECCCCCCH-------HHHHHHHHHcCCceEEEEeecCCCCCc---cccceEEEEcCCCC-----CcccccH
Confidence 35799999976544321 124567888999888776422 11111 56899999999964 3332210
Q ss_pred CChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHH-HcCCCEEEEeH-HHHHHHHH
Q 017539 87 LSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCL-ERNIPYLGICR-GSQVLNVA 140 (369)
Q Consensus 87 ~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~-e~~iPiLGICl-G~QlL~~a 140 (369)
+. -|+.. -.+..-....++.++ +.+.++||||- |+|+|...
T Consensus 1091 --~~--~~a~~---------il~n~~~~~~~~~f~~r~dt~~LGiCN~G~Q~L~~l 1133 (1304)
T PHA03366 1091 --AR--AAVAA---------LLSNPAVRDALLRFLNRPDTFSLGCGELGCQILFAL 1133 (1304)
T ss_pred --HH--HHHHH---------hhhchHHHHHHHHHHhCCCCeEEEeCcHHHHHHHHc
Confidence 00 01100 001111234555666 45899999998 99999873
No 99
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=98.14 E-value=6.8e-06 Score=84.52 Aligned_cols=94 Identities=17% Similarity=0.266 Sum_probs=64.6
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChh
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPE 90 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~ 90 (369)
++|+|+-.+ .+ .|-.+.+++.|++.|+.++.+....+ +. +..+|+|+|+||. |..++..-
T Consensus 245 ~~Iava~d~-af-----nFy~~~~~~~L~~~g~~~~~~~~~~d-~~----l~~~d~l~ipGG~---~~~~~~~l------ 304 (449)
T TIGR00379 245 VRIAVAQDQ-AF-----NFYYQDNLDALTHNAAELVPFSPLED-TE----LPDVDAVYIGGGF---PELFAEEL------ 304 (449)
T ss_pred cEEEEEech-hh-----ceeHHHHHHHHHHCCCEEEEECCccC-CC----CCCCCEEEeCCcH---HHHHHHHH------
Confidence 578887553 22 34347789999999999999865322 12 2369999999994 32222110
Q ss_pred HHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHh
Q 017539 91 ELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVAC 141 (369)
Q Consensus 91 ~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~ 141 (369)
.+.......++.+.+.+.|+||||-|+|+|+..+
T Consensus 305 -----------------~~~~~~~~~i~~~~~~G~pv~g~CgG~~~L~~~i 338 (449)
T TIGR00379 305 -----------------SQNQALRDSIKTFIHQGLPIYGECGGLMYLSQSL 338 (449)
T ss_pred -----------------HhhhHHHHHHHHHHHcCCCEEEEcHHHHHHHhhh
Confidence 0112234677888889999999999999999876
No 100
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.13 E-value=4.5e-06 Score=86.15 Aligned_cols=80 Identities=19% Similarity=0.350 Sum_probs=47.9
Q ss_pred EEEEecCcccCcCcccccchhHHHHHHHHCCC-EEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChh
Q 017539 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGA-VPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPE 90 (369)
Q Consensus 12 ~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga-~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~ 90 (369)
+|||++-++. .++++..|+ .+.++. ..+++.+ ..+|+||||||..... .
T Consensus 2 ~iGvlal~sv-------------~~al~~lg~~~~~vv~-~~~~~~l----~~~D~lILPGG~~~~~-------~----- 51 (476)
T PRK06278 2 EIGLLDIKGS-------------LPCFENFGNLPTKIID-ENNIKEI----KDLDGLIIPGGSLVES-------G----- 51 (476)
T ss_pred EEEEEehhhH-------------HHHHHHhcCCCcEEEE-eCChHHh----ccCCEEEECCCchhhc-------c-----
Confidence 5888887754 244666665 333332 2244443 4799999999842100 0
Q ss_pred HHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHh
Q 017539 91 ELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVAC 141 (369)
Q Consensus 91 ~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~ 141 (369)
.+...+.+...+.++||||||.|||||+...
T Consensus 52 --------------------~l~~~l~~~i~~~g~pvlGICgG~QmLg~~~ 82 (476)
T PRK06278 52 --------------------SLTDELKKEILNFDGYIIGICSGFQILSEKI 82 (476)
T ss_pred --------------------hHHHHHHHHHHHcCCeEEEEcHHHHhccccc
Confidence 0011122223344899999999999999865
No 101
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=98.12 E-value=4.5e-05 Score=86.72 Aligned_cols=106 Identities=15% Similarity=0.067 Sum_probs=61.0
Q ss_pred CCCcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCC
Q 017539 8 VILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNL 87 (369)
Q Consensus 8 ~~~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~ 87 (369)
..+|+|.|+.-+..... ..-+.++..+|+.+..|....-... ..++.++||+++||.+ |++...
T Consensus 927 ~~~p~VaIl~~pG~N~~-------~e~~~Af~~aGf~~~~v~~~dl~~~--~~l~~f~glv~~Ggfs-----y~D~lg-- 990 (1202)
T TIGR01739 927 DPRHQVAVLLLPGQSVP-------HGLLAALTNAGFDPRIVSITELKKT--DFLDTFSGLIIGGASG-----TLDSEV-- 990 (1202)
T ss_pred CCCCeEEEEeCCCCCCH-------HHHHHHHHHcCCceEEEEeccCCCC--CchhheEEEEEcCcCC-----CCccch--
Confidence 34789999876644321 1345678889988887764321110 1245789999999964 333211
Q ss_pred ChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHH-HcCCCEEEEeH-HHHHHHHH
Q 017539 88 SPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCL-ERNIPYLGICR-GSQVLNVA 140 (369)
Q Consensus 88 ~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~-e~~iPiLGICl-G~QlL~~a 140 (369)
++. . |..+ ..+..-..+.++.++ +.+.++||||- |+|+|...
T Consensus 991 sg~-~-~a~~---------il~n~~~~~~~~~f~~r~dtf~LGiCN~G~Q~L~~l 1034 (1202)
T TIGR01739 991 GAR-A-LAAA---------LLRNQAFLRDLLTFLNRPDTFSLGFGELGCQLLLAL 1034 (1202)
T ss_pred HHH-H-HHHH---------hhcchHHHHHHHHHHhCCCceEEEeCcHHHHHHHHc
Confidence 000 0 1100 001111234455666 45899999997 99999974
No 102
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=98.11 E-value=5.9e-05 Score=77.17 Aligned_cols=92 Identities=22% Similarity=0.224 Sum_probs=62.2
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChh
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPE 90 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~ 90 (369)
++|+|.-.. -..|.-+..++.|+++ ++.+.+....+ +. +..+|+|+|+||. |..+++
T Consensus 234 ~~iavA~D~------AF~FyY~enl~~L~~~-aelv~fSPl~~-~~----lp~~D~l~lpGG~---~e~~~~-------- 290 (433)
T PRK13896 234 PTVAVARDA------AFCFRYPATIERLRER-ADVVTFSPVAG-DP----LPDCDGVYLPGGY---PELHAD-------- 290 (433)
T ss_pred CeEEEEEcC------ccceeCHHHHHHHHhc-CcEEEEcCCCC-CC----CCCCCEEEeCCCc---hhhHHH--------
Confidence 477775432 2355566788999999 98888765433 22 2369999999993 444332
Q ss_pred HHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHh
Q 017539 91 ELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVAC 141 (369)
Q Consensus 91 ~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~ 141 (369)
+++. ...+..++.+.+.+.||+|||-|+|+|+..+
T Consensus 291 ---~L~~-------------n~~~~~i~~~~~~G~pi~aeCGG~q~L~~~i 325 (433)
T PRK13896 291 ---ALAD-------------SPALDELADRAADGLPVLGECGGLMALAESL 325 (433)
T ss_pred ---HHHh-------------CCcHHHHHHHHHCCCcEEEEehHHHHhhccc
Confidence 1110 0012566777788999999999999999876
No 103
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=98.10 E-value=1.6e-05 Score=70.26 Aligned_cols=57 Identities=21% Similarity=0.198 Sum_probs=40.6
Q ss_pred hcCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHH
Q 017539 60 SFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNV 139 (369)
Q Consensus 60 ~l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~ 139 (369)
.++.+|+|+|+|| -|..++.+- . +..-....|+.+.+.+.||+|||-|+|+|..
T Consensus 4 ~~~~~D~i~lpGg---~pe~~~~~l----------~-------------~~~~~~~~I~~~~~~G~pi~aeCGG~~~Lg~ 57 (158)
T PF07685_consen 4 LPPDADGIYLPGG---YPELFALEL----------S-------------RNRGLKEAIREAAEAGGPIYAECGGYQYLGE 57 (158)
T ss_pred CCCCCCEEEECCC---cHHHHHHHH----------H-------------HHhCHHHHHHHHHHcCCcEEEEchHHHHHHH
Confidence 3557999999999 343332211 1 1112346788888999999999999999998
Q ss_pred HhC
Q 017539 140 ACG 142 (369)
Q Consensus 140 a~G 142 (369)
.+-
T Consensus 58 ~i~ 60 (158)
T PF07685_consen 58 SII 60 (158)
T ss_pred HHh
Confidence 764
No 104
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=97.99 E-value=1.4e-05 Score=74.09 Aligned_cols=100 Identities=20% Similarity=0.155 Sum_probs=65.5
Q ss_pred CCcEEEEecCcccCcCcccccchhHHHHHHHHC-CCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCC
Q 017539 9 ILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGY-GAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNL 87 (369)
Q Consensus 9 ~~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~-Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~ 87 (369)
..|+|+++..-+.. .+....++.+++.+. |+.++.+....+ +...+.+...|+|+|+||. ...
T Consensus 30 ~~~~i~~IptAs~~----~~~~~~~~~~a~~~l~G~~~~~~~~~~~-~~~~~~l~~ad~I~l~GG~---~~~-------- 93 (212)
T cd03146 30 ARPKVLFVPTASGD----RDEYTARFYAAFESLRGVEVSHLHLFDT-EDPLDALLEADVIYVGGGN---TFN-------- 93 (212)
T ss_pred CCCeEEEECCCCCC----HHHHHHHHHHHHhhccCcEEEEEeccCc-ccHHHHHhcCCEEEECCch---HHH--------
Confidence 35789998765431 122233567888889 999887764332 2334556689999999983 111
Q ss_pred ChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHH
Q 017539 88 SPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (369)
Q Consensus 88 ~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a 140 (369)
-+..+|+ .....+++.+.+++.|++|||.|+|++...
T Consensus 94 ---~~~~l~~-------------~~l~~~l~~~~~~g~~i~G~SAGa~i~~~~ 130 (212)
T cd03146 94 ---LLAQWRE-------------HGLDAILKAALERGVVYIGWSAGSNCWFPS 130 (212)
T ss_pred ---HHHHHHH-------------cCHHHHHHHHHHCCCEEEEECHhHHhhCCC
Confidence 1122221 112356777778899999999999999874
No 105
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=97.97 E-value=0.00013 Score=70.58 Aligned_cols=137 Identities=15% Similarity=0.083 Sum_probs=82.9
Q ss_pred CCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHH-HHH
Q 017539 62 EPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVL-NVA 140 (369)
Q Consensus 62 ~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL-~~a 140 (369)
..+||+|+||-| +.---|.+...+ +. ...++.++.+.-...|.||.|.|.. ...
T Consensus 98 ~~fDGlIITGAP-vE~l~FeeV~YW-----------------------~E-l~~I~dwsk~~v~Stl~iCWaAqAaLy~~ 152 (300)
T TIGR01001 98 RKFDGLIITGAP-VELVPFEDVAYW-----------------------EE-LTEIMEWSKHNVTSTMFICWAAQAGLKYF 152 (300)
T ss_pred CCCCEEEEcCCC-cCCCCcccCCcH-----------------------HH-HHHHHHHHHHcCcchHHHHHHHHHHHHHH
Confidence 479999999986 111123333321 11 2367788888889999999999994 445
Q ss_pred hCCeeeeccchhhhccCCCCcceeecccCCCCCceeEEEEcCCCcchhhhhccccccceEEEEe-cccchhhc--c--cC
Q 017539 141 CGGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVN-SYHHQGVK--R--LA 215 (369)
Q Consensus 141 ~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~~~~~~V~i~~~s~L~~~~~~~~~~~~~~~~vn-s~H~~~V~--~--L~ 215 (369)
+|-.-.....+-+|- . .|.+ .+.++|.++|.+ .|.+. |=|.. |+ . -.
T Consensus 153 yGI~K~~l~~KlfGV-------------f-----~h~~--~~~~pL~rGfdd-------~f~~PhSR~t~-i~~~~i~~~ 204 (300)
T TIGR01001 153 YGIPKYTLPEKLSGV-------------Y-----KHDI--APDSLLLRGFDD-------FFLAPHSRYAD-FDAEDIDKV 204 (300)
T ss_pred cCCCccccCCceEEe-------------e-----cCcc--CCCCccccCCCC-------ccccCCCCCCC-CCHHHHhcC
Confidence 565533222222220 0 1223 267888888863 34443 22322 32 1 23
Q ss_pred CCeEEEEEcCCCcEEEEEeCCCCCCCCCCcEEEEcccCCccCC
Q 017539 216 QRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMRR 258 (369)
Q Consensus 216 ~g~~vlA~s~dg~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~ 258 (369)
++++++|.+++.-+-.+..++ ++ -+=++-|||+...
T Consensus 205 ~~L~vla~s~e~G~~l~~s~d------~r-~vfi~GH~EYd~~ 240 (300)
T TIGR01001 205 TDLEILAESDEAGVYLAANKD------ER-NIFVTGHPEYDAY 240 (300)
T ss_pred CCCeEEecCCCcceEEEEcCC------CC-EEEEcCCCccChh
Confidence 689999999877666777665 23 4449999999763
No 106
>PRK00784 cobyric acid synthase; Provisional
Probab=97.88 E-value=1.8e-05 Score=82.27 Aligned_cols=76 Identities=22% Similarity=0.199 Sum_probs=52.6
Q ss_pred HHHHHHHH-CCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhH
Q 017539 33 YHLDLIVG-YGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDS 111 (369)
Q Consensus 33 ~~l~~l~~-~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~ 111 (369)
.-++.|+. +|+.++.+.. .+. +..+|||+|+||. |..++ .++++ ..
T Consensus 266 ~nl~~l~~~~g~~v~~~s~---~~~----l~~~d~lilpGg~---~~~~~----------~~~~~-------------~~ 312 (488)
T PRK00784 266 TDFDPLRAEPGVDVRYVRP---GEP----LPDADLVILPGSK---NTIAD----------LAWLR-------------ES 312 (488)
T ss_pred cChHHHhhcCCCeEEEECC---ccc----cccCCEEEECCcc---chHHH----------HHHHH-------------Hc
Confidence 45788887 9999998863 222 3469999999995 22221 11111 11
Q ss_pred HHHHHHHHHHHcCCCEEEEeHHHHHHHHHh
Q 017539 112 IELRLAKLCLERNIPYLGICRGSQVLNVAC 141 (369)
Q Consensus 112 ~e~~li~~~~e~~iPiLGIClG~QlL~~a~ 141 (369)
-....++.+.+.++|+||||.|+|+|+..+
T Consensus 313 ~l~~~i~~~~~~g~pilg~C~G~~~L~~~~ 342 (488)
T PRK00784 313 GWDEAIRAHARRGGPVLGICGGYQMLGRRI 342 (488)
T ss_pred CHHHHHHHHHHcCCeEEEECHHHHHHhhhc
Confidence 123566777888999999999999999976
No 107
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=97.85 E-value=7.5e-05 Score=58.50 Aligned_cols=78 Identities=27% Similarity=0.338 Sum_probs=53.7
Q ss_pred hHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhH
Q 017539 32 EYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDS 111 (369)
Q Consensus 32 ~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~ 111 (369)
....+.+..+|..+.+++..............+|+|+++||....+... ++.
T Consensus 15 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lii~g~~~~~~~~~----------------------------~~~ 66 (115)
T cd01653 15 ASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLA----------------------------RDE 66 (115)
T ss_pred HHHHHHHHHCCCeEEEEcCCCCceeccCChhccCEEEECCCCCchhhhc----------------------------cCH
Confidence 4567888999999999986554211112345799999999964221100 112
Q ss_pred HHHHHHHHHHHcCCCEEEEeHHHHHH
Q 017539 112 IELRLAKLCLERNIPYLGICRGSQVL 137 (369)
Q Consensus 112 ~e~~li~~~~e~~iPiLGIClG~QlL 137 (369)
...+.++.+.++++|++|+|.|+|++
T Consensus 67 ~~~~~i~~~~~~~~~i~~~c~g~~~l 92 (115)
T cd01653 67 ALLALLREAAAAGKPILGICLGAQLL 92 (115)
T ss_pred HHHHHHHHHHHcCCEEEEECchhHhH
Confidence 23567777888899999999999999
No 108
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=97.63 E-value=0.00022 Score=53.27 Aligned_cols=77 Identities=27% Similarity=0.314 Sum_probs=51.0
Q ss_pred HHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhHH
Q 017539 33 YHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSI 112 (369)
Q Consensus 33 ~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~ 112 (369)
.+.+.+...|..+.+++..............+|+|+++||++...... ++..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~g~~~~~~~~~----------------------------~~~~ 67 (92)
T cd03128 16 SPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLA----------------------------WDEA 67 (92)
T ss_pred cHHHHHHhCCCEEEEEeCCCCcccccCCcccCCEEEECCCCcchhhhc----------------------------cCHH
Confidence 456778888988888886654321112345799999999975321100 1122
Q ss_pred HHHHHHHHHHcCCCEEEEeHHHHHH
Q 017539 113 ELRLAKLCLERNIPYLGICRGSQVL 137 (369)
Q Consensus 113 e~~li~~~~e~~iPiLGIClG~QlL 137 (369)
....+.+..+.+.|++|+|.|+|++
T Consensus 68 ~~~~~~~~~~~~~~i~~~~~g~~~~ 92 (92)
T cd03128 68 LLALLREAAAAGKPVLGICLGAQLL 92 (92)
T ss_pred HHHHHHHHHHcCCEEEEEecccccC
Confidence 3456666667789999999999874
No 109
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=97.39 E-value=0.00011 Score=76.03 Aligned_cols=28 Identities=21% Similarity=0.185 Sum_probs=24.1
Q ss_pred HHHHHHHHHcCCCEEEEeHHHHHHHHHh
Q 017539 114 LRLAKLCLERNIPYLGICRGSQVLNVAC 141 (369)
Q Consensus 114 ~~li~~~~e~~iPiLGIClG~QlL~~a~ 141 (369)
...|+.+.+.+.||||||.|||+|...+
T Consensus 309 ~~~i~~~~~~G~pvlgiCgG~q~Lg~~i 336 (475)
T TIGR00313 309 AEEILDFAKEGGIVIGICGGYQMLGKEL 336 (475)
T ss_pred HHHHHHHHHcCCcEEEEcHHHHHhhhhh
Confidence 3567777788999999999999999865
No 110
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=97.26 E-value=0.0067 Score=61.61 Aligned_cols=192 Identities=20% Similarity=0.263 Sum_probs=113.1
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChh
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPE 90 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~ 90 (369)
++|+|....- ..|--+..++.++.+||+++......+. +++ +.+|+|.|+|| -|.+|.++-.
T Consensus 246 ~rIAVA~D~A------F~FyY~~nl~~Lr~~GAelv~FSPL~D~-~lP---~~~D~vYlgGG---YPElfA~~L~----- 307 (451)
T COG1797 246 VRIAVARDAA------FNFYYPENLELLREAGAELVFFSPLADE-ELP---PDVDAVYLGGG---YPELFAEELS----- 307 (451)
T ss_pred ceEEEEecch------hccccHHHHHHHHHCCCEEEEeCCcCCC-CCC---CCCCEEEeCCC---ChHHHHHHHh-----
Confidence 4788865431 2455567899999999999988655432 222 14999999999 5666544221
Q ss_pred HHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHh---CCeeeeccc-----hhhhccCCCCcc
Q 017539 91 ELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVAC---GGTLYQDIE-----KEVSRKCPENQR 162 (369)
Q Consensus 91 ~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~---GG~l~~~~~-----~e~g~~~~~~~~ 162 (369)
. ..-.++.|+.+.+.|+||+|=|-|+--|+..+ .|..+++.. ..+. .+
T Consensus 308 ---~---------------n~~~~~~i~~~~~~G~piyaECGGlMYL~~~le~~~G~~~~M~Gvlp~~~~m~------~R 363 (451)
T COG1797 308 ---A---------------NESMRRAIKAFAAAGKPIYAECGGLMYLGESLEDADGDTYEMVGVLPGSTRMT------KR 363 (451)
T ss_pred ---h---------------CHHHHHHHHHHHHcCCceEEecccceeehhheeccCCceeeeeeeeccchhhh------hh
Confidence 1 11234678888899999999999998888765 444454431 1111 12
Q ss_pred eeecccCCCCCceeEEEEcCCCcchhhhhccccccceEEEEecccchhhcccCCCeEEEEEc--CCCcE---EEEEeCCC
Q 017539 163 VVHIDYDNYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFA--PDGLI---EGFYDPDA 237 (369)
Q Consensus 163 v~H~~~~~~~~~~~~V~i~~~s~L~~~~~~~~~~~~~~~~vns~H~~~V~~L~~g~~vlA~s--~dg~V---eaie~~~~ 237 (369)
..+.+ ...+....++++.. ....+.-+-+|.-.+...++ .+....- .+|.. .++..
T Consensus 364 l~~lG-------Y~~~~~~~d~~~~~--------~G~~irGHEFHyS~~~~~~~-~~~a~~~~~g~g~~~~~~G~~~--- 424 (451)
T COG1797 364 LQALG-------YREAEAVDDTLLLR--------AGEKIRGHEFHYSRLITEED-AEPAFRVRRGDGIDNGRDGYRS--- 424 (451)
T ss_pred hhccc-------eeEEEecCCccccc--------CCceeeeeeeeeeecccCCc-CceeeeeecccCccccccceee---
Confidence 22222 23455545554322 12457777788776644332 3333322 23322 23433
Q ss_pred CCCCCCCcEEEEcccCCccCCCCCCCCCCCCchHHHHHHHHHH
Q 017539 238 YNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAV 280 (369)
Q Consensus 238 ~~~~~~~~i~GvQFHPE~~~~~~~~~~~~~~~~~lf~~Fv~a~ 280 (369)
.+++|.=.|-=..+. ..+.++|+++|
T Consensus 425 ------gnv~asY~H~H~~s~-----------~~~~~~~v~~~ 450 (451)
T COG1797 425 ------GNVLASYLHLHFASN-----------PAFAARFVAAA 450 (451)
T ss_pred ------CCeEEEEEeeecccC-----------HHHHHHHHHhh
Confidence 457887777544332 46788898876
No 111
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=97.25 E-value=0.0039 Score=58.21 Aligned_cols=31 Identities=16% Similarity=0.068 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHcCCCEEEEeHHHHHHHHHh
Q 017539 111 SIELRLAKLCLERNIPYLGICRGSQVLNVAC 141 (369)
Q Consensus 111 ~~e~~li~~~~e~~iPiLGIClG~QlL~~a~ 141 (369)
....++++.+.+.++||.+||.|-++|..+.
T Consensus 115 ~~v~~lv~~f~~~gK~vaAIChgp~iL~~~~ 145 (217)
T PRK11780 115 PDVKALVRAFHQAGKPIGFICIAPAMLPKIL 145 (217)
T ss_pred HHHHHHHHHHHHCCCEEEEECHHHHHHHHHh
Confidence 3456889999999999999999999998876
No 112
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=97.16 E-value=0.00099 Score=62.82 Aligned_cols=101 Identities=14% Similarity=0.242 Sum_probs=66.1
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCCh
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSP 89 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~ 89 (369)
.|+|+.+..-+.. ..+.+|+ ..+.+.+.+.|+.++.+... ++..+.+...|+|+++||... .+
T Consensus 31 ~~~v~fIPtAs~~-~~~~~y~-~~~~~af~~lG~~v~~l~~~---~d~~~~l~~ad~I~v~GGnt~---~l--------- 93 (233)
T PRK05282 31 RRKAVFIPYAGVT-QSWDDYT-AKVAEALAPLGIEVTGIHRV---ADPVAAIENAEAIFVGGGNTF---QL--------- 93 (233)
T ss_pred CCeEEEECCCCCC-CCHHHHH-HHHHHHHHHCCCEEEEeccc---hhhHHHHhcCCEEEECCccHH---HH---------
Confidence 5888888655422 2333454 34677888999998877643 233455678999999999421 10
Q ss_pred hHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhC
Q 017539 90 EELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACG 142 (369)
Q Consensus 90 ~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~G 142 (369)
+..+| +.-...+++.++++++|++|+|.|.-+++...+
T Consensus 94 --~~~l~-------------~~gl~~~l~~~~~~G~~~~G~SAGAii~~~~i~ 131 (233)
T PRK05282 94 --LKQLY-------------ERGLLAPIREAVKNGTPYIGWSAGANVAGPTIR 131 (233)
T ss_pred --HHHHH-------------HCCcHHHHHHHHHCCCEEEEECHHHHhhhccce
Confidence 11111 111235678888899999999999988776544
No 113
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=97.01 E-value=0.0026 Score=57.03 Aligned_cols=28 Identities=36% Similarity=0.581 Sum_probs=25.0
Q ss_pred HHHHHHHHHHcCCCEEEEeHHHHHHHHH
Q 017539 113 ELRLAKLCLERNIPYLGICRGSQVLNVA 140 (369)
Q Consensus 113 e~~li~~~~e~~iPiLGIClG~QlL~~a 140 (369)
...+++++.++++||.|||.|.++|+.+
T Consensus 97 ~~~~l~~~~~~~k~i~~ic~G~~~La~a 124 (180)
T cd03169 97 VLAIVRHFAEANKPVAAICHGPQILAAA 124 (180)
T ss_pred HHHHHHHHHHcCCEEEEECcHHHHHHHc
Confidence 3578888899999999999999999985
No 114
>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]
Probab=96.96 E-value=0.004 Score=67.41 Aligned_cols=205 Identities=19% Similarity=0.266 Sum_probs=103.2
Q ss_pred CCCCCcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCC
Q 017539 6 LSVILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETS 85 (369)
Q Consensus 6 ~~~~~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~ 85 (369)
+++.+|+|.|+--..+.... .-.-++..+|..++-|.-. +.-.=.-.++.+-||.+|||-.. .++.+....
T Consensus 1054 l~s~~PkVAilREeGvNg~r-------EMa~af~~AgF~~~DVtmt-DlL~G~~~ld~frGlaf~GGFSY-aDvLgSakG 1124 (1320)
T KOG1907|consen 1054 LSSTAPKVAILREEGVNGDR-------EMAAAFYAAGFETVDVTMT-DLLAGRHHLDDFRGLAFCGGFSY-ADVLGSAKG 1124 (1320)
T ss_pred hhcCCCceEEeeccccccHH-------HHHHHHHHcCCceeeeeee-hhhcCceeHhHhcceeeecCcch-Hhhhccccc
Confidence 45778999998433332111 2234677899988866432 11000113446889999999531 112222111
Q ss_pred CCChhHHHHHHhhcCCCCccCch-hhHHHHHHHHHHH-HcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcce
Q 017539 86 NLSPEELEEIRRLHTSDTAIDKE-KDSIELRLAKLCL-ERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRV 163 (369)
Q Consensus 86 ~~~~~~~~~i~~~~~~~~~~~~~-rd~~e~~li~~~~-e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v 163 (369)
| +..-. .... +.-..++. ..+.=-||||-|-|+|+.. |-+... .++- .....
T Consensus 1125 -W----------------Aasil~ne~v-~~QF~~F~~R~DtFslGiCNGCQlms~L--g~i~p~----~~~~--p~~~l 1178 (1320)
T KOG1907|consen 1125 -W----------------AASILFNESV-RSQFEAFFNRQDTFSLGICNGCQLMSRL--GWIGPE----VGKW--PDVFL 1178 (1320)
T ss_pred -h----------------hhheeeChhH-HHHHHHHhcCCCceeeecccHhHHHHHh--cccCcc----ccCC--Cceee
Confidence 1 00000 0011 11112222 2356779999999999985 111111 1100 00001
Q ss_pred eecccCCCCCceeEEEEcCC-CcchhhhhccccccceEEEEecccchhh---------cc-cCCCeEEEEE---------
Q 017539 164 VHIDYDNYDGHRHVVKVVKD-TPLHDWFKDSLEEEKMEIWVNSYHHQGV---------KR-LAQRFVPMAF--------- 223 (369)
Q Consensus 164 ~H~~~~~~~~~~~~V~i~~~-s~L~~~~~~~~~~~~~~~~vns~H~~~V---------~~-L~~g~~vlA~--------- 223 (369)
.|..-..++..+-.|+|..+ |-+...+.+ ..+.++..|+.+= +. ..+++..+-+
T Consensus 1179 ~~Nes~rfE~r~~~vkI~~~~SIml~gM~g------s~LgvwvAHGEGRa~f~~e~~~e~~~~~gl~~iryvdd~g~~te 1252 (1320)
T KOG1907|consen 1179 DHNESGRFECRFGMVKIESNVSIMLSGMAG------SVLGVWVAHGEGRATFRSEQNLEHLKKEGLVCIRYVDDYGNVTE 1252 (1320)
T ss_pred ecccccceeeeEEEEEeCCCchhhhccccC------CceeeEEEecccceecCcHHHHHHHhhcCeeEEEEecCCCCEee
Confidence 12222223344566777543 344444432 3556666676541 11 1234444443
Q ss_pred ----cCCC---cEEEEEeCCCCCCCCCCcEEEEcccCCccCC
Q 017539 224 ----APDG---LIEGFYDPDAYNPAEGKFIMGLQFHPERMRR 258 (369)
Q Consensus 224 ----s~dg---~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~ 258 (369)
+++| -|+||..++ ...+++.-||||...
T Consensus 1253 ~yPfNpNGS~~gIAgicSpd-------GRhLAMMPHpER~~l 1287 (1320)
T KOG1907|consen 1253 LYPFNPNGSPDGIAGICSPD-------GRHLAMMPHPERVFL 1287 (1320)
T ss_pred ecccCCCCCcccceeeeCCC-------CCeeeccCCchheee
Confidence 3445 478888886 678999999999764
No 115
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=96.89 E-value=0.00057 Score=57.43 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=19.6
Q ss_pred HHHHHHHHHcCCCEEEEeHHHHHH
Q 017539 114 LRLAKLCLERNIPYLGICRGSQVL 137 (369)
Q Consensus 114 ~~li~~~~e~~iPiLGIClG~QlL 137 (369)
.+.++.+++.+.|+||||+|.-+.
T Consensus 67 ~~~i~~~v~~g~p~LGIClGAy~a 90 (114)
T cd03144 67 NRRIRNFVRNGGNYLGICAGAYLA 90 (114)
T ss_pred cHHHHHHHHCCCcEEEEecCccce
Confidence 356777778899999999997665
No 116
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=96.81 E-value=0.011 Score=54.53 Aligned_cols=100 Identities=16% Similarity=0.155 Sum_probs=65.0
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCC--ChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS--GVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNL 87 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~--~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~ 87 (369)
.|+|+++..-+.. .....+.|.+.+++.|+..+.++... +...+.+.+...|+|+++|| ++..+
T Consensus 29 ~~~i~~iptA~~~----~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG---~~~~~------- 94 (210)
T cd03129 29 GARVLFIPTASGD----RDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGG---NQLRL------- 94 (210)
T ss_pred CCeEEEEeCCCCC----hHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCC---cHHHH-------
Confidence 5888888655422 12233567888999999998776532 33455667788999999999 33221
Q ss_pred ChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHH
Q 017539 88 SPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (369)
Q Consensus 88 ~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a 140 (369)
++.+... .. ...+.+...++.|+.|+|-|..++...
T Consensus 95 -------~~~l~~t---------~~-~~~i~~~~~~G~v~~G~SAGA~~~~~~ 130 (210)
T cd03129 95 -------LSVLRET---------PL-LDAILKRVARGVVIGGTSAGAAVMGET 130 (210)
T ss_pred -------HHHHHhC---------Ch-HHHHHHHHHcCCeEEEcCHHHHHhhhc
Confidence 1111111 01 233444444899999999999999985
No 117
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=96.50 E-value=0.011 Score=55.13 Aligned_cols=31 Identities=19% Similarity=0.192 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHcCCCEEEEeHHHHHHHHHhC
Q 017539 112 IELRLAKLCLERNIPYLGICRGSQVLNVACG 142 (369)
Q Consensus 112 ~e~~li~~~~e~~iPiLGIClG~QlL~~a~G 142 (369)
....+++.+.++++||.+||-|-++|..+.+
T Consensus 113 ~l~~lv~~f~~~gK~VaAIChgp~~L~~~~~ 143 (213)
T cd03133 113 EVERLVREFHQAGKPIGAICIAPALAAKILG 143 (213)
T ss_pred HHHHHHHHHHHCCCeEEEECHHHHHHHHHhc
Confidence 3468889999999999999999999998764
No 118
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=96.42 E-value=0.016 Score=54.60 Aligned_cols=29 Identities=14% Similarity=0.203 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHcCCCEEEEeHHHHHHHHH
Q 017539 112 IELRLAKLCLERNIPYLGICRGSQVLNVA 140 (369)
Q Consensus 112 ~e~~li~~~~e~~iPiLGIClG~QlL~~a 140 (369)
...++++.+.+.++||-.||.|-++|..+
T Consensus 115 ~l~~ll~~f~~~gK~iaAIChgp~~L~~a 143 (231)
T cd03147 115 NLQKIAQQIYANGGVVAAVCHGPAILANL 143 (231)
T ss_pred HHHHHHHHHHHcCCEEEEEChHHHHHHhh
Confidence 34688999999999999999999999876
No 119
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=96.32 E-value=0.018 Score=59.45 Aligned_cols=67 Identities=18% Similarity=0.258 Sum_probs=41.8
Q ss_pred CCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHH
Q 017539 42 GAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCL 121 (369)
Q Consensus 42 Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~ 121 (369)
+..+..++...+ +...|.|||||.-+ +-.+|.|+|+- -++..+.+++
T Consensus 276 ~v~v~~v~~~~~-------l~~~dlvIlPGsk~-------------t~~DL~~lr~~------------g~d~~i~~~~- 322 (486)
T COG1492 276 DVRVRFVKPGSD-------LRDADLVILPGSKN-------------TIADLKILREG------------GMDEKILEYA- 322 (486)
T ss_pred CeEEEEeccCCC-------CCCCCEEEeCCCcc-------------cHHHHHHHHHc------------CHHHHHHHHH-
Confidence 666666654322 23588899998732 22345666531 1233444444
Q ss_pred HcCCCEEEEeHHHHHHHHHh
Q 017539 122 ERNIPYLGICRGSQVLNVAC 141 (369)
Q Consensus 122 e~~iPiLGIClG~QlL~~a~ 141 (369)
..+.||+|||-|||+|...+
T Consensus 323 ~~~~~viGICGG~QmLG~~i 342 (486)
T COG1492 323 RKGGDVIGICGGYQMLGRRL 342 (486)
T ss_pred hCCCCEEEEcchHHhhhhhh
Confidence 45899999999999997654
No 120
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=96.12 E-value=0.0051 Score=57.02 Aligned_cols=76 Identities=26% Similarity=0.259 Sum_probs=48.4
Q ss_pred HHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhHHHHHH
Q 017539 37 LIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRL 116 (369)
Q Consensus 37 ~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~l 116 (369)
..+.+|+.+.+++.... +...+ +.+|-+++-||.| |.+. |-..|- ..-..-
T Consensus 29 ra~~rgi~v~i~~vsl~-d~~~~--~~~Dl~~~GGgqD-----~eQ~-----------i~t~d~----------~~k~~~ 79 (250)
T COG3442 29 RAEKRGIKVEIVEVSLT-DTFPD--DSYDLYFLGGGQD-----YEQE-----------IATRDL----------LTKKEG 79 (250)
T ss_pred HHHhcCCceEEEEeecC-CCCCc--ccccEEEecCchH-----HHHH-----------HHhhhh----------ccccHH
Confidence 35667887777765432 12222 3699999988865 2221 111110 111256
Q ss_pred HHHHHHcCCCEEEEeHHHHHHHHHh
Q 017539 117 AKLCLERNIPYLGICRGSQVLNVAC 141 (369)
Q Consensus 117 i~~~~e~~iPiLGIClG~QlL~~a~ 141 (369)
++.+++.++|+|.||-|.|+|...+
T Consensus 80 l~~~i~~g~p~laiCgg~QlLG~yY 104 (250)
T COG3442 80 LKDAIENGKPVLAICGGYQLLGQYY 104 (250)
T ss_pred HHHHHhcCCcEEEEccchhhcccee
Confidence 7888899999999999999998754
No 121
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=96.08 E-value=0.027 Score=53.10 Aligned_cols=29 Identities=10% Similarity=0.181 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHcCCCEEEEeHHHHHHHHH
Q 017539 112 IELRLAKLCLERNIPYLGICRGSQVLNVA 140 (369)
Q Consensus 112 ~e~~li~~~~e~~iPiLGIClG~QlL~~a 140 (369)
...++++.+.++++||-.||.|-++|..+
T Consensus 117 ~l~~ll~~f~~~gK~VaAICHGp~~L~~a 145 (232)
T cd03148 117 DVAAALQWAIKNDRFVITLCHGPAAFLAA 145 (232)
T ss_pred HHHHHHHHHHHcCCEEEEECcHHHHHHhc
Confidence 34678899999999999999999977664
No 122
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=96.07 E-value=0.0091 Score=52.40 Aligned_cols=28 Identities=36% Similarity=0.621 Sum_probs=24.6
Q ss_pred HHHHHHHHHHcCCCEEEEeHHHHHHHHH
Q 017539 113 ELRLAKLCLERNIPYLGICRGSQVLNVA 140 (369)
Q Consensus 113 e~~li~~~~e~~iPiLGIClG~QlL~~a 140 (369)
...+++++.++++|+.|||-|.++|+.+
T Consensus 81 l~~~l~~~~~~~~~i~~ic~G~~~La~a 108 (166)
T TIGR01382 81 AVRLVREFVEKGKPVAAICHGPQLLISA 108 (166)
T ss_pred HHHHHHHHHHcCCEEEEEChHHHHHHhc
Confidence 3577888888999999999999999975
No 123
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=95.99 E-value=0.27 Score=49.43 Aligned_cols=50 Identities=26% Similarity=0.388 Sum_probs=35.6
Q ss_pred CCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHH
Q 017539 62 EPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNV 139 (369)
Q Consensus 62 ~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~ 139 (369)
..++-+|+|||.|+ | |.. .+.+ .-.+.||.+++.|--+||||.|.-.-+.
T Consensus 48 ~~~~LlV~PGG~d~-~--y~~--------------~l~~-----------~g~~~Ir~fV~~GG~YlGiCAGaY~as~ 97 (367)
T PF09825_consen 48 SKCALLVMPGGADL-P--YCR--------------SLNG-----------EGNRRIRQFVENGGGYLGICAGAYYASS 97 (367)
T ss_pred cCCcEEEECCCcch-H--HHH--------------hhCh-----------HHHHHHHHHHHcCCcEEEECcchhhhcc
Confidence 47999999999763 2 221 1111 1246889999999999999999776654
No 124
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=95.97 E-value=0.015 Score=50.99 Aligned_cols=28 Identities=29% Similarity=0.433 Sum_probs=24.7
Q ss_pred HHHHHHHHHHcCCCEEEEeHHHHHHHHH
Q 017539 113 ELRLAKLCLERNIPYLGICRGSQVLNVA 140 (369)
Q Consensus 113 e~~li~~~~e~~iPiLGIClG~QlL~~a 140 (369)
.+.+++++.++++|+.|||-|.++|+.+
T Consensus 83 ~~~~l~~~~~~~~~i~~ic~G~~~La~a 110 (165)
T cd03134 83 AVAFVRAFAEAGKPVAAICHGPWVLISA 110 (165)
T ss_pred HHHHHHHHHHcCCeEEEEchHHHHHHhc
Confidence 3578888889999999999999999874
No 125
>PRK04155 chaperone protein HchA; Provisional
Probab=95.93 E-value=0.03 Score=54.44 Aligned_cols=29 Identities=17% Similarity=0.240 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHcCCCEEEEeHHHHHHHHH
Q 017539 112 IELRLAKLCLERNIPYLGICRGSQVLNVA 140 (369)
Q Consensus 112 ~e~~li~~~~e~~iPiLGIClG~QlL~~a 140 (369)
....+++++.+.++||..||.|-++|..+
T Consensus 168 ~l~~ll~~~~~~~K~VaAICHGPa~Ll~a 196 (287)
T PRK04155 168 DVAAALQWALDNDRFIITLCHGPAALLAA 196 (287)
T ss_pred HHHHHHHHHHHcCCEEEEEChHHHHHHHc
Confidence 34688999999999999999999877664
No 126
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=95.75 E-value=0.046 Score=46.80 Aligned_cols=80 Identities=18% Similarity=0.191 Sum_probs=50.5
Q ss_pred HHHHHHHHCCCEEEEEcCCCC-----------hh-hhhhh-cCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhc
Q 017539 33 YHLDLIVGYGAVPAIVPRVSG-----------VH-MLLDS-FEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLH 99 (369)
Q Consensus 33 ~~l~~l~~~Ga~~vivp~~~~-----------~~-~l~~~-l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~ 99 (369)
...+.+..+|..+.++..... ++ .+.+. .+.+|.|+++||.......
T Consensus 19 ~~~~~~~~a~~~v~vvs~~~~~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~~~~-------------------- 78 (142)
T cd03132 19 ALKAALKAAGANVKVVAPTLGGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAAFAL-------------------- 78 (142)
T ss_pred HHHHHHHHCCCEEEEEecCcCceecCCCcEEecceeecCCChhhcCEEEECCCccCHHHH--------------------
Confidence 356677888888887754321 11 11111 1248999999985321000
Q ss_pred CCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHH
Q 017539 100 TSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (369)
Q Consensus 100 ~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a 140 (369)
..+.-...+++++.++++|+.+||-|-.+|+.+
T Consensus 79 --------~~~~~l~~~l~~~~~~~~~I~aic~G~~~La~a 111 (142)
T cd03132 79 --------APSGRALHFVTEAFKHGKPIGAVGEGSDLLEAA 111 (142)
T ss_pred --------ccChHHHHHHHHHHhcCCeEEEcCchHHHHHHc
Confidence 011123577888888999999999999999974
No 127
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=95.42 E-value=0.078 Score=47.38 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=24.3
Q ss_pred HHHHHHHHHHcCCCEEEEeHHHHHHHHH
Q 017539 113 ELRLAKLCLERNIPYLGICRGSQVLNVA 140 (369)
Q Consensus 113 e~~li~~~~e~~iPiLGIClG~QlL~~a 140 (369)
..+.++++.+++++|.+||-|.++|+.+
T Consensus 85 l~~~l~~~~~~~~~i~aic~g~~~La~a 112 (187)
T cd03137 85 LLAALRRAAARGARVASVCTGAFVLAEA 112 (187)
T ss_pred HHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence 4577788888899999999999999985
No 128
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=95.26 E-value=0.15 Score=46.20 Aligned_cols=27 Identities=11% Similarity=0.103 Sum_probs=22.7
Q ss_pred HHHHHHHHHHcCCCEEEEeHHHHHHHH
Q 017539 113 ELRLAKLCLERNIPYLGICRGSQVLNV 139 (369)
Q Consensus 113 e~~li~~~~e~~iPiLGIClG~QlL~~ 139 (369)
...+++++.++++++.+||-|..+|..
T Consensus 88 l~~~L~~~~~~g~~v~aic~G~~~ll~ 114 (196)
T PRK11574 88 LVETVRQFHRSGRIVAAICAAPATVLV 114 (196)
T ss_pred HHHHHHHHHHCCCEEEEECHhHHHHHH
Confidence 357888888999999999999987554
No 129
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=95.10 E-value=0.016 Score=50.21 Aligned_cols=30 Identities=37% Similarity=0.449 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHcCCCEEEEeHHHHHHHHH
Q 017539 111 SIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (369)
Q Consensus 111 ~~e~~li~~~~e~~iPiLGIClG~QlL~~a 140 (369)
.....+++++.+.++||.+||.|-.+|..+
T Consensus 58 ~~l~~~~~~~~~~~k~iaaIC~g~~~L~~~ 87 (147)
T PF01965_consen 58 KDLLELLKEFYEAGKPIAAICHGPAVLAAA 87 (147)
T ss_dssp HHHHHHHHHHHHTT-EEEEETTCHHHHHHT
T ss_pred HHHHHHHHHHHHcCCeEEecCCCcchhhcc
Confidence 344688999999999999999999888875
No 130
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=94.94 E-value=0.063 Score=49.90 Aligned_cols=100 Identities=16% Similarity=0.186 Sum_probs=64.1
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEE-EEcCCC----ChhhhhhhcCCCCEEEECCCCCCCCCCccccC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPA-IVPRVS----GVHMLLDSFEPIHGVLLCEGEDIDPSLYEAET 84 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~v-ivp~~~----~~~~l~~~l~~~DGlll~GG~didp~~y~~~~ 84 (369)
.|+|+++...+.. .+...+.|.+.+.+.|+..+ .+.... ....+.+.+...|+|+++|| ++..|-+
T Consensus 29 ~~~i~~iptA~~~----~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~~ad~I~~~GG---~~~~~~~-- 99 (217)
T cd03145 29 GARIVVIPAASEE----PAEVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVARLRDADGIFFTGG---DQLRITS-- 99 (217)
T ss_pred CCcEEEEeCCCcC----hhHHHHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHHHhCCEEEEeCC---cHHHHHH--
Confidence 5788888655422 12334567888889998644 333321 23344566778999999999 4322211
Q ss_pred CCCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHH
Q 017539 85 SNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (369)
Q Consensus 85 ~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a 140 (369)
.+ +..-....++.+.+++.|+.|+--|.-+++..
T Consensus 100 ---------~l-------------~~t~l~~~l~~~~~~G~v~~G~SAGA~i~~~~ 133 (217)
T cd03145 100 ---------AL-------------GGTPLLDALRKVYRGGVVIGGTSAGAAVMSDT 133 (217)
T ss_pred ---------HH-------------cCChHHHHHHHHHHcCCEEEEccHHHHhhhhc
Confidence 11 11122467788888999999999998888764
No 131
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=94.93 E-value=0.068 Score=47.37 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=24.7
Q ss_pred HHHHHHHHHHcCCCEEEEeHHHHHHHHH
Q 017539 113 ELRLAKLCLERNIPYLGICRGSQVLNVA 140 (369)
Q Consensus 113 e~~li~~~~e~~iPiLGIClG~QlL~~a 140 (369)
..++++++.+++.++.+||-|.++|+.+
T Consensus 80 l~~~l~~~~~~~~~i~aic~G~~~La~a 107 (170)
T cd03140 80 LAGLVRQALKQGKPVAAICGATLALARA 107 (170)
T ss_pred HHHHHHHHHHcCCEEEEEChHHHHHHHC
Confidence 3578888888999999999999999985
No 132
>COG1897 MetA Homoserine trans-succinylase [Amino acid transport and metabolism]
Probab=94.73 E-value=0.11 Score=49.28 Aligned_cols=110 Identities=18% Similarity=0.151 Sum_probs=61.8
Q ss_pred HHHHHHHHcCCCEEEEeHHHHHHHHHh-CCeeeeccchhhhccCCCCcceeecccCCCCCceeEEEEcCCCcchhhhhcc
Q 017539 115 RLAKLCLERNIPYLGICRGSQVLNVAC-GGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKDTPLHDWFKDS 193 (369)
Q Consensus 115 ~li~~~~e~~iPiLGIClG~QlL~~a~-GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~~~~~~V~i~~~s~L~~~~~~~ 193 (369)
+++.+....-.-.|=||.|.|.--.++ |-.-++...+-+|- - .|.+ +.++++++++|.+
T Consensus 126 ~I~eWskt~V~STl~ICWgaqAaly~~yGv~K~~l~~Kl~GV-------y-----------~h~~-l~p~~~l~rGfdd- 185 (307)
T COG1897 126 QIFEWSKTHVTSTLHICWGAQAALYYFYGVPKYTLPEKLSGV-------Y-----------KHDI-LSPHSLLTRGFDD- 185 (307)
T ss_pred HHHHHHhhcchhhhhhHHHHHHHHHHHcCCCccccchhhhce-------e-----------eccc-cCccchhhccCCc-
Confidence 344444444457899999999877765 44333322222220 0 1232 4578889898864
Q ss_pred ccccceEEEEe-cccch----hhcccCCCeEEEEEcCCCcEEEEEeCCCCCCCCCCcEEEEcccCCccCC
Q 017539 194 LEEEKMEIWVN-SYHHQ----GVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMRR 258 (369)
Q Consensus 194 ~~~~~~~~~vn-s~H~~----~V~~L~~g~~vlA~s~dg~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~ 258 (369)
.|.+. |-|.+ .+... +++++++.+...-+..+..++ ++ -+=+--|||+...
T Consensus 186 ------~f~~PhSR~t~~~~e~i~~~-~~LeIL~es~e~G~~l~a~k~------~r-~ifv~gH~EYD~~ 241 (307)
T COG1897 186 ------SFLAPHSRYTDVPKEDILAV-PDLEILAESKEAGVYLLASKD------GR-NIFVTGHPEYDAT 241 (307)
T ss_pred ------cccCcccccccCCHHHHhhC-CCceeeecccccceEEEecCC------CC-eEEEeCCcchhhh
Confidence 23322 22322 22233 469999999766555555554 23 3336679999874
No 133
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=94.32 E-value=0.067 Score=49.83 Aligned_cols=28 Identities=18% Similarity=0.202 Sum_probs=25.1
Q ss_pred HHHHHHHHHHcCCCEEEEeHHHHHHHHH
Q 017539 113 ELRLAKLCLERNIPYLGICRGSQVLNVA 140 (369)
Q Consensus 113 e~~li~~~~e~~iPiLGIClG~QlL~~a 140 (369)
...+++++.+++++|.+||-|-++|+.+
T Consensus 112 l~~~l~~~~~~~k~iaaIC~g~~~La~a 139 (221)
T cd03141 112 LQDLLREFYENGKVVAAVCHGPAALLNV 139 (221)
T ss_pred HHHHHHHHHHcCCEEEEEcchHHHHHhc
Confidence 4678889999999999999999999985
No 134
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=94.31 E-value=0.098 Score=49.85 Aligned_cols=100 Identities=16% Similarity=0.170 Sum_probs=63.8
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCE-EEEEcCCC----ChhhhhhhcCCCCEEEECCCCCCCCCCccccC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAV-PAIVPRVS----GVHMLLDSFEPIHGVLLCEGEDIDPSLYEAET 84 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~-~vivp~~~----~~~~l~~~l~~~DGlll~GG~didp~~y~~~~ 84 (369)
.|+|+++..-+. . .+...+.|.+++.++|+. +.++.... ..++..+.+...|+|+++|| +...+-
T Consensus 28 ~~rI~~iptAS~---~-~~~~~~~~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l~~ad~I~~~GG---nq~~l~--- 97 (250)
T TIGR02069 28 DAIIVIITSASE---E-PREVGERYITIFSRLGVKEVKILDVREREDASDENAIALLSNATGIFFTGG---DQLRIT--- 97 (250)
T ss_pred CceEEEEeCCCC---C-hHHHHHHHHHHHHHcCCceeEEEecCChHHccCHHHHHHHhhCCEEEEeCC---CHHHHH---
Confidence 489999975432 1 123355688999999985 44444321 12234556778999999999 332211
Q ss_pred CCCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHH
Q 017539 85 SNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (369)
Q Consensus 85 ~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a 140 (369)
..+ ++.-...+++.+.+++.|+.|+--|.-+|+..
T Consensus 98 --------~~l-------------~~t~l~~~l~~~~~~G~vi~G~SAGA~i~~~~ 132 (250)
T TIGR02069 98 --------SLL-------------GDTPLLDRLRKRVHEGIILGGTSAGAAVMSDT 132 (250)
T ss_pred --------HHH-------------cCCcHHHHHHHHHHcCCeEEEccHHHHhcccc
Confidence 111 11122467788888999999999999888653
No 135
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=94.08 E-value=0.075 Score=47.71 Aligned_cols=28 Identities=29% Similarity=0.447 Sum_probs=25.2
Q ss_pred HHHHHHHHHHcCCCEEEEeHHHHHHHHH
Q 017539 113 ELRLAKLCLERNIPYLGICRGSQVLNVA 140 (369)
Q Consensus 113 e~~li~~~~e~~iPiLGIClG~QlL~~a 140 (369)
.+.+++++.+.++||.+||-|-++|..+
T Consensus 88 ~~~~v~~~~~~~k~vaaIC~g~~~L~~a 115 (188)
T COG0693 88 LLAFVRDFYANGKPVAAICHGPAVLAAA 115 (188)
T ss_pred HHHHHHHHHHcCCEEEEEChhHHHHhcc
Confidence 3688999999999999999999999875
No 136
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=93.66 E-value=0.098 Score=45.39 Aligned_cols=28 Identities=25% Similarity=0.273 Sum_probs=24.8
Q ss_pred HHHHHHHHHHcCCCEEEEeHHHHHHHHH
Q 017539 113 ELRLAKLCLERNIPYLGICRGSQVLNVA 140 (369)
Q Consensus 113 e~~li~~~~e~~iPiLGIClG~QlL~~a 140 (369)
..++++++.++++++.+||-|..+|+.+
T Consensus 82 l~~~l~~~~~~~~~i~~ic~g~~~La~a 109 (163)
T cd03135 82 LIKLLKEFNAKGKLIAAICAAPAVLAKA 109 (163)
T ss_pred HHHHHHHHHHcCCEEEEEchhHHHHHHc
Confidence 4577888888999999999999999986
No 137
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=93.64 E-value=0.068 Score=46.82 Aligned_cols=77 Identities=9% Similarity=0.083 Sum_probs=51.8
Q ss_pred HHHHHHHHCCCEEEEEcCCC-ChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhH
Q 017539 33 YHLDLIVGYGAVPAIVPRVS-GVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDS 111 (369)
Q Consensus 33 ~~l~~l~~~Ga~~vivp~~~-~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~ 111 (369)
.+.+++.+.|+.+..++... ..+++.+.+...|+|+|+|| ++..|- ..+| +.
T Consensus 4 ~~~~~f~~~g~~v~~l~~~~~~~~~~~~~i~~ad~I~~~GG---~~~~l~-----------~~l~-------------~t 56 (154)
T PF03575_consen 4 KFRKAFRKLGFEVDQLDLSDRNDADILEAIREADAIFLGGG---DTFRLL-----------RQLK-------------ET 56 (154)
T ss_dssp HHHHHHHHCT-EEEECCCTSCGHHHHHHHHHHSSEEEE--S----HHHHH-----------HHHH-------------HT
T ss_pred HHHHHHHHCCCEEEEEeccCCChHHHHHHHHhCCEEEECCC---CHHHHH-----------HHHH-------------hC
Confidence 46778999999988888654 34566777778999999999 442211 1121 12
Q ss_pred HHHHHHHHHHHcCCCEEEEeHHHHH
Q 017539 112 IELRLAKLCLERNIPYLGICRGSQV 136 (369)
Q Consensus 112 ~e~~li~~~~e~~iPiLGIClG~Ql 136 (369)
-....|+.+.++|.|+.|+-.|.-+
T Consensus 57 ~l~~~i~~~~~~G~vi~G~SAGA~i 81 (154)
T PF03575_consen 57 GLDEAIREAYRKGGVIIGTSAGAMI 81 (154)
T ss_dssp THHHHHHHHHHTTSEEEEETHHHHC
T ss_pred CHHHHHHHHHHCCCEEEEEChHHhh
Confidence 2346788888899999999999744
No 138
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=93.62 E-value=0.15 Score=46.00 Aligned_cols=28 Identities=14% Similarity=0.138 Sum_probs=24.4
Q ss_pred HHHHHHHHHHcCCCEEEEeHHHHHHHHH
Q 017539 113 ELRLAKLCLERNIPYLGICRGSQVLNVA 140 (369)
Q Consensus 113 e~~li~~~~e~~iPiLGIClG~QlL~~a 140 (369)
.+.+++++.+++.+|.+||-|..+|+.+
T Consensus 93 l~~~l~~~~~~~~~i~aic~G~~~La~a 120 (195)
T cd03138 93 LIAWLRRQHANGATVAAACTGVFLLAEA 120 (195)
T ss_pred HHHHHHHHHHcCCEEEEecHHHHHHHHc
Confidence 3577888888999999999999999874
No 139
>PRK11249 katE hydroperoxidase II; Provisional
Probab=92.42 E-value=0.5 Score=51.67 Aligned_cols=97 Identities=10% Similarity=-0.002 Sum_probs=59.4
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCC-------h-hhhhhhcC-----CCCEEEECCCCCCCC
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSG-------V-HMLLDSFE-----PIHGVLLCEGEDIDP 77 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~-------~-~~l~~~l~-----~~DGlll~GG~didp 77 (369)
.+|+|+...... ..--....+++.++|+.+.+|..... . -.....++ .+|+|+|+||... +
T Consensus 598 RKIaILVaDG~d-----~~ev~~~~daL~~AGa~V~VVSp~~G~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG~~~-~ 671 (752)
T PRK11249 598 RKVAILLNDGVD-----AADLLAILKALKAKGVHAKLLYPRMGEVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKAN-I 671 (752)
T ss_pred cEEEEEecCCCC-----HHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCEEecceeeccCCccCCCEEEECCCchh-H
Confidence 467777544321 11122467788999999888753211 0 00111121 4899999999521 1
Q ss_pred CCccccCCCCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHH
Q 017539 78 SLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (369)
Q Consensus 78 ~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a 140 (369)
.. ...+.-.+.+|+.+.+.+++|.+||-|.++|..+
T Consensus 672 ~~---------------------------L~~d~~al~fL~eaykHgK~IAAiCaG~~LLaaA 707 (752)
T PRK11249 672 AD---------------------------LADNGDARYYLLEAYKHLKPIALAGDARKLKAAL 707 (752)
T ss_pred HH---------------------------HhhCHHHHHHHHHHHHcCCEEEEeCccHHHHHhc
Confidence 00 0012234578888899999999999999999974
No 140
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=92.36 E-value=0.45 Score=42.13 Aligned_cols=28 Identities=21% Similarity=0.296 Sum_probs=23.6
Q ss_pred HHHHHHHHHHcCCCEEEEeHHHHHHHHH
Q 017539 113 ELRLAKLCLERNIPYLGICRGSQVLNVA 140 (369)
Q Consensus 113 e~~li~~~~e~~iPiLGIClG~QlL~~a 140 (369)
....++++.++++++.+||-|.-+|+.+
T Consensus 83 ~~~~l~~~~~~~k~i~aic~g~~~La~a 110 (183)
T cd03139 83 LLDFIRRQAARAKYVTSVCTGALLLAAA 110 (183)
T ss_pred HHHHHHHhcccCCEEEEEchHHHHHHhc
Confidence 3567788888899999999999888874
No 141
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=92.21 E-value=0.22 Score=44.10 Aligned_cols=28 Identities=25% Similarity=0.223 Sum_probs=24.7
Q ss_pred HHHHHHHHHHcCCCEEEEeHHHHHHHHH
Q 017539 113 ELRLAKLCLERNIPYLGICRGSQVLNVA 140 (369)
Q Consensus 113 e~~li~~~~e~~iPiLGIClG~QlL~~a 140 (369)
...+++++.++++||.+||-|..+|+.+
T Consensus 85 l~~~l~~~~~~~~~i~~ic~G~~~La~a 112 (179)
T TIGR01383 85 LLNILKKQESKGKLVAAICAAPAVLLAA 112 (179)
T ss_pred HHHHHHHHHHCCCEEEEEChhHHHHHhc
Confidence 3577888888999999999999999985
No 142
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=91.99 E-value=0.6 Score=45.56 Aligned_cols=89 Identities=15% Similarity=0.123 Sum_probs=55.3
Q ss_pred CCCCCcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCCh--------hhhhhhcCCCCEEEECCCCCCCC
Q 017539 6 LSVILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGV--------HMLLDSFEPIHGVLLCEGEDIDP 77 (369)
Q Consensus 6 ~~~~~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~--------~~l~~~l~~~DGlll~GG~didp 77 (369)
|++.+.+|||+.+... ....-+.....+|+.+.|..+.+-+..... ....+..+.+|-+|.-||-+
T Consensus 1 ~~~~~~~i~iv~~~~~---~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~lGGDG--- 74 (292)
T PRK03378 1 MNNHFKCIGIVGHPRH---PTALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIGQQADLAIVVGGDG--- 74 (292)
T ss_pred CCccCCEEEEEEeCCC---HHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcCCCCCEEEEECCcH---
Confidence 4556678999987643 112233455677899999888765422110 01122223589999999921
Q ss_pred CCccccCCCCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHH
Q 017539 78 SLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGS 134 (369)
Q Consensus 78 ~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~ 134 (369)
-.+..++.+...++|++||=.|.
T Consensus 75 ----------------------------------T~L~aa~~~~~~~~Pilgin~G~ 97 (292)
T PRK03378 75 ----------------------------------NMLGAARVLARYDIKVIGINRGN 97 (292)
T ss_pred ----------------------------------HHHHHHHHhcCCCCeEEEEECCC
Confidence 12455566556689999999886
No 143
>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]
Probab=91.95 E-value=1.3 Score=41.67 Aligned_cols=76 Identities=16% Similarity=0.161 Sum_probs=46.9
Q ss_pred HHHHHHCCCEEEEEcCCCC----------------hhhhhhhcCCCCEEEECCC-CCCCCCCccccCCCCChhHHHHHHh
Q 017539 35 LDLIVGYGAVPAIVPRVSG----------------VHMLLDSFEPIHGVLLCEG-EDIDPSLYEAETSNLSPEELEEIRR 97 (369)
Q Consensus 35 l~~l~~~Ga~~vivp~~~~----------------~~~l~~~l~~~DGlll~GG-~didp~~y~~~~~~~~~~~~~~i~~ 97 (369)
++.+++.|+.++++-.... ..+... +.+|.|+|||| +. +.. |
T Consensus 25 ~dVLrr~Gi~Vt~ag~~~~~~vkcs~~v~~~~d~~l~D~~~--~~yDviilPGG~~g--~e~-------L---------- 83 (247)
T KOG2764|consen 25 IDVLRRGGIDVTVAGPNKKEGVKCSRGVHILPDNALFDVVD--SKYDVIILPGGLPG--AET-------L---------- 83 (247)
T ss_pred HHHHHhcCceEEEecCCCCcccccccceEecccccchhhcc--ccccEEEecCCchh--hhh-------h----------
Confidence 5668888888876653211 011111 48999999999 32 100 0
Q ss_pred hcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhC
Q 017539 98 LHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACG 142 (369)
Q Consensus 98 ~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~G 142 (369)
........+++...+.+.+|..||.| |+++.+.+
T Consensus 84 ----------~~~~~v~~lvK~q~~~gkLIaaICaa-p~~al~a~ 117 (247)
T KOG2764|consen 84 ----------SECEKVVDLVKEQAESGKLIAAICAA-PLTALAAH 117 (247)
T ss_pred ----------hhcHHHHHHHHHHHhcCCeEEEeecc-hHHHHhhc
Confidence 01123357888888889999999998 54444433
No 144
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=91.15 E-value=0.83 Score=44.90 Aligned_cols=89 Identities=20% Similarity=0.197 Sum_probs=54.2
Q ss_pred CCCCCCcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCCh-----------------hhhhhhcCCCCEE
Q 017539 5 DLSVILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGV-----------------HMLLDSFEPIHGV 67 (369)
Q Consensus 5 ~~~~~~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~-----------------~~l~~~l~~~DGl 67 (369)
|||.. .+|||+.+.... ...-+.....+|+.+.|..+++....... .......+.+|-+
T Consensus 1 ~~~~~-~~I~iv~~~~~~---~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v 76 (306)
T PRK03372 1 DMTAS-RRVLLVAHTGRD---EATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELV 76 (306)
T ss_pred CCCCc-cEEEEEecCCCH---HHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhcccCCCEE
Confidence 45555 369999876421 11223455677899999988875432110 0001222357888
Q ss_pred EECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHH
Q 017539 68 LLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGS 134 (369)
Q Consensus 68 ll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~ 134 (369)
|.-||-+ -.+..++.+...++|||||=.|.
T Consensus 77 i~lGGDG-------------------------------------T~L~aar~~~~~~~PilGIN~G~ 106 (306)
T PRK03372 77 LVLGGDG-------------------------------------TILRAAELARAADVPVLGVNLGH 106 (306)
T ss_pred EEEcCCH-------------------------------------HHHHHHHHhccCCCcEEEEecCC
Confidence 8889821 12456666667789999998874
No 145
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=91.12 E-value=0.46 Score=42.41 Aligned_cols=28 Identities=25% Similarity=0.254 Sum_probs=24.1
Q ss_pred HHHHHHHHHHcCCCEEEEeHHHHHHHHH
Q 017539 113 ELRLAKLCLERNIPYLGICRGSQVLNVA 140 (369)
Q Consensus 113 e~~li~~~~e~~iPiLGIClG~QlL~~a 140 (369)
.+.+++.+.+++..|.+||-|..+|+.+
T Consensus 84 ~~~~l~~~~~~~~~i~aic~g~~~La~a 111 (185)
T cd03136 84 LLAWLRRAARRGVALGGIDTGAFLLARA 111 (185)
T ss_pred HHHHHHHHHhcCCEEEEEcHHHHHHHHc
Confidence 3577788888899999999999999874
No 146
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=89.56 E-value=1.7 Score=38.67 Aligned_cols=68 Identities=18% Similarity=0.217 Sum_probs=40.6
Q ss_pred CCcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCC-CChhhhhhhc------CCCCEEEECCCCCCCC
Q 017539 9 ILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRV-SGVHMLLDSF------EPIHGVLLCEGEDIDP 77 (369)
Q Consensus 9 ~~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~-~~~~~l~~~l------~~~DGlll~GG~didp 77 (369)
.+|+|+|++-.+.. ....+.-......++++.|+.++.+... .+.+.+.+.+ ..+|-||.+||.++++
T Consensus 3 ~~~rv~vit~~d~~-~~~~d~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~g~ 77 (163)
T TIGR02667 3 IPLRIAILTVSDTR-TEEDDTSGQYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILITGGTGFTG 77 (163)
T ss_pred CccEEEEEEEeCcC-CccCCCcHHHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCC
Confidence 36889998644322 2234444444556788899988755433 2333333322 3699999999975544
No 147
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=89.45 E-value=1.7 Score=37.57 Aligned_cols=65 Identities=18% Similarity=0.189 Sum_probs=42.0
Q ss_pred cEEEEecCccc-C-------cCcccccchhHHHHHHHHCCCEEEEEcCC-CChhhh----hhhcCCCCEEEECCCCCC
Q 017539 11 PRVLIVSRRSV-R-------KNKFVDFVGEYHLDLIVGYGAVPAIVPRV-SGVHML----LDSFEPIHGVLLCEGEDI 75 (369)
Q Consensus 11 P~IgIv~~~~~-~-------~~~~~~~v~~~~l~~l~~~Ga~~vivp~~-~~~~~l----~~~l~~~DGlll~GG~di 75 (369)
|+++|++--+. . .++..+.-......++++.|+.+...... .+.+.+ .+.++.+|-||.+||...
T Consensus 1 prv~ii~tGdEl~~~~~~~~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliIttGG~g~ 78 (144)
T TIGR00177 1 PRVAVISTGDELVEPGQPLEPGQIYDSNGPLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAVDEADVVLTTGGTGV 78 (144)
T ss_pred CEEEEEEcCcccccCCCCCCCCeEEeCcHHHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 67888754332 1 25556666666777899999988755433 233333 334457999999999654
No 148
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=89.38 E-value=0.94 Score=44.23 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=23.3
Q ss_pred HHHHHHHHHcCCCEEEEeHHHHHHHHH
Q 017539 114 LRLAKLCLERNIPYLGICRGSQVLNVA 140 (369)
Q Consensus 114 ~~li~~~~e~~iPiLGIClG~QlL~~a 140 (369)
..+++.+.+++.+|.|||-|.-+|+.+
T Consensus 96 ~~~l~~~~~~~~~i~aic~g~~~La~a 122 (322)
T PRK09393 96 LEALRAAHARGARLCSICSGVFVLAAA 122 (322)
T ss_pred HHHHHHHHHcCCEEEEEcHHHHHHHhc
Confidence 567778778899999999999998875
No 149
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=88.83 E-value=2.1 Score=41.81 Aligned_cols=88 Identities=15% Similarity=0.101 Sum_probs=53.0
Q ss_pred CCCCcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCC---h----------hhhhhhcCCCCEEEECCCC
Q 017539 7 SVILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSG---V----------HMLLDSFEPIHGVLLCEGE 73 (369)
Q Consensus 7 ~~~~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~---~----------~~l~~~l~~~DGlll~GG~ 73 (369)
.+.+.+|||+.+.... ...-+.....+|+.+.|..+++-+.... . ....+....+|-+|.-||-
T Consensus 2 ~~~~~~i~ii~~~~~~---~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lGGD 78 (296)
T PRK04539 2 NSPFHNIGIVTRPNTP---DIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELGQYCDLVAVLGGD 78 (296)
T ss_pred CCCCCEEEEEecCCCH---HHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccccchhhcCcCCCEEEEECCc
Confidence 3345579999876431 1222345567789999998887542111 0 0011112258888888982
Q ss_pred CCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHH
Q 017539 74 DIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGS 134 (369)
Q Consensus 74 didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~ 134 (369)
+ -.+..++.+...++||+||=.|.
T Consensus 79 G-------------------------------------T~L~aa~~~~~~~~PilGIN~G~ 102 (296)
T PRK04539 79 G-------------------------------------TFLSVAREIAPRAVPIIGINQGH 102 (296)
T ss_pred H-------------------------------------HHHHHHHHhcccCCCEEEEecCC
Confidence 1 12455666656789999999885
No 150
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=87.92 E-value=0.48 Score=41.48 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=22.7
Q ss_pred HHHHHHHHHcCCCEEEEeHHHHHHHHH
Q 017539 114 LRLAKLCLERNIPYLGICRGSQVLNVA 140 (369)
Q Consensus 114 ~~li~~~~e~~iPiLGIClG~QlL~~a 140 (369)
+..++...+++.++.|||-|..+|+.+
T Consensus 83 ~~~l~~~~~~~~~i~aic~G~~~La~a 109 (166)
T PF13278_consen 83 LDWLRQQHAQGTYIAAICTGALLLAEA 109 (166)
T ss_dssp HHHHHHHHCCTSEEEEETTHHHHHHHT
T ss_pred HHHhhhhhccceEEeeeehHHHHHhhh
Confidence 456666667889999999999999986
No 151
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=86.01 E-value=3.2 Score=40.45 Aligned_cols=88 Identities=11% Similarity=0.083 Sum_probs=52.7
Q ss_pred CCCCcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCC---h-----hhhhhhcCCCCEEEECCCCCCCCC
Q 017539 7 SVILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSG---V-----HMLLDSFEPIHGVLLCEGEDIDPS 78 (369)
Q Consensus 7 ~~~~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~---~-----~~l~~~l~~~DGlll~GG~didp~ 78 (369)
++.+..|||+.+.... .........++++++.|..+.+...... . ....+..+.+|-+|.-||-+
T Consensus 2 ~~~~~~v~iv~~~~~~---~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDG---- 74 (291)
T PRK02155 2 KSQFKTVALIGRYQTP---GIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVVLGGDG---- 74 (291)
T ss_pred CCcCCEEEEEecCCCH---HHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEEECCcH----
Confidence 4445579999776431 1122345567889999988776542110 0 01122223588999889821
Q ss_pred CccccCCCCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHH
Q 017539 79 LYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGS 134 (369)
Q Consensus 79 ~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~ 134 (369)
..+.+++.....++|+|||=.|.
T Consensus 75 ---------------------------------t~l~~~~~~~~~~~pilGIn~G~ 97 (291)
T PRK02155 75 ---------------------------------TMLGIGRQLAPYGVPLIGINHGR 97 (291)
T ss_pred ---------------------------------HHHHHHHHhcCCCCCEEEEcCCC
Confidence 12455565556789999998885
No 152
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=85.72 E-value=7.2 Score=36.45 Aligned_cols=74 Identities=11% Similarity=0.165 Sum_probs=53.3
Q ss_pred HHHHHHHCCCEEEEEcCCC-ChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhHH
Q 017539 34 HLDLIVGYGAVPAIVPRVS-GVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSI 112 (369)
Q Consensus 34 ~l~~l~~~Ga~~vivp~~~-~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~ 112 (369)
.-+++...|+.+.-++... +.+.++..+...|+|.+.||.-++ =|..+|+. .
T Consensus 54 ~~~~l~~lg~~v~~L~l~~~~~~~Ie~~l~~~d~IyVgGGNTF~--------------LL~~lke~-------------g 106 (224)
T COG3340 54 VRNALAKLGLEVSELHLSKPPLAAIENKLMKADIIYVGGGNTFN--------------LLQELKET-------------G 106 (224)
T ss_pred HHHHHHHcCCeeeeeeccCCCHHHHHHhhhhccEEEECCchHHH--------------HHHHHHHh-------------C
Confidence 3467889999999888654 567777777889999999995221 01222221 2
Q ss_pred HHHHHHHHHHcCCCEEEEeHHH
Q 017539 113 ELRLAKLCLERNIPYLGICRGS 134 (369)
Q Consensus 113 e~~li~~~~e~~iPiLGIClG~ 134 (369)
...+|+..+++|+|+.|+-.|.
T Consensus 107 ld~iIr~~vk~G~~YiG~SAGA 128 (224)
T COG3340 107 LDDIIRERVKAGTPYIGWSAGA 128 (224)
T ss_pred cHHHHHHHHHcCCceEEeccCc
Confidence 2478899999999999998773
No 153
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=84.73 E-value=3.3 Score=40.71 Aligned_cols=83 Identities=17% Similarity=0.127 Sum_probs=50.3
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCCh-----------------hhhhhhcCCCCEEEECCCC
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGV-----------------HMLLDSFEPIHGVLLCEGE 73 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~-----------------~~l~~~l~~~DGlll~GG~ 73 (369)
.+|||+.+.... ...-+.....+|+.+.|..+++-+..... ....+..+.+|-+|.-||-
T Consensus 2 ~~igiv~n~~~~---~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~iGGD 78 (305)
T PRK02649 2 PKAGIIYNDGKP---LAVRTAEELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGFDSSMKFAIVLGGD 78 (305)
T ss_pred CEEEEEEcCCCH---HHHHHHHHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhcccCcCEEEEEeCc
Confidence 468999876431 12234455677899999988775421100 0011222357888888982
Q ss_pred CCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHH
Q 017539 74 DIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRG 133 (369)
Q Consensus 74 didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG 133 (369)
+ -.+.+++.+...++|+|||=.|
T Consensus 79 G-------------------------------------TlL~aar~~~~~~iPilGIN~G 101 (305)
T PRK02649 79 G-------------------------------------TVLSAARQLAPCGIPLLTINTG 101 (305)
T ss_pred H-------------------------------------HHHHHHHHhcCCCCcEEEEeCC
Confidence 1 1245666666678999999877
No 154
>PRK01215 competence damage-inducible protein A; Provisional
Probab=84.09 E-value=5 Score=38.58 Aligned_cols=66 Identities=9% Similarity=0.026 Sum_probs=42.0
Q ss_pred CCcEEEEecCcc-cCcCcccccchhHHHHHHHHCCCEEEEEcCC-CChh----hhhhhcCCCCEEEECCCCC
Q 017539 9 ILPRVLIVSRRS-VRKNKFVDFVGEYHLDLIVGYGAVPAIVPRV-SGVH----MLLDSFEPIHGVLLCEGED 74 (369)
Q Consensus 9 ~~P~IgIv~~~~-~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~-~~~~----~l~~~l~~~DGlll~GG~d 74 (369)
.+|+++|++--+ ...+...+.-.....+.+.+.|+.+..+..+ ++.+ .+.+.++..|-||++||-+
T Consensus 2 ~~~~v~Ii~~GdEll~G~i~dtn~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~~~DlVIttGG~g 73 (264)
T PRK01215 2 DKWFAWIITIGNELLIGRTVNTNASWIARRLTYLGYTVRRITVVMDDIEEIVSAFREAIDRADVVVSTGGLG 73 (264)
T ss_pred CCCEEEEEEEChhccCCeEEEhhHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 468999986443 3345555554445566788999988644322 2333 3444556789999999854
No 155
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=83.72 E-value=4.7 Score=39.27 Aligned_cols=84 Identities=17% Similarity=0.133 Sum_probs=52.8
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCCh-----hhhhhhcCCCCEEEECCCCCCCCCCccccC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGV-----HMLLDSFEPIHGVLLCEGEDIDPSLYEAET 84 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~-----~~l~~~l~~~DGlll~GG~didp~~y~~~~ 84 (369)
..+|||+.++.. ...-+.....+|+.+.|..+.+-+..... ....+....+|-+|.-||-+
T Consensus 10 ~~~i~ii~~~~~----~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~iGGDG---------- 75 (287)
T PRK14077 10 IKKIGLVTRPNV----SLDKEILKLQKILSIYKVEILLEKESAEILDLPGYGLDELFKISDFLISLGGDG---------- 75 (287)
T ss_pred CCEEEEEeCCcH----HHHHHHHHHHHHHHHCCCEEEEecchhhhhcccccchhhcccCCCEEEEECCCH----------
Confidence 347999988742 22334455678899999888875432110 00112223588888889921
Q ss_pred CCCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHH
Q 017539 85 SNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGS 134 (369)
Q Consensus 85 ~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~ 134 (369)
-.+..++.+...++|||||=.|.
T Consensus 76 ---------------------------T~L~aa~~~~~~~~PilGIN~G~ 98 (287)
T PRK14077 76 ---------------------------TLISLCRKAAEYDKFVLGIHAGH 98 (287)
T ss_pred ---------------------------HHHHHHHHhcCCCCcEEEEeCCC
Confidence 12456666666789999999886
No 156
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=83.34 E-value=4 Score=39.84 Aligned_cols=83 Identities=20% Similarity=0.134 Sum_probs=50.9
Q ss_pred EEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCCh-----------h---hhhhhcCCCCEEEECCCCCCCC
Q 017539 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGV-----------H---MLLDSFEPIHGVLLCEGEDIDP 77 (369)
Q Consensus 12 ~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~-----------~---~l~~~l~~~DGlll~GG~didp 77 (369)
+|||+.+... .....+.....+|+.+.|..+++-+..... . ...+..+.+|-+|.-||-+
T Consensus 2 ~igii~~~~~---~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGDG--- 75 (292)
T PRK01911 2 KIAIFGQTYQ---ESASPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELDGSADMVISIGGDG--- 75 (292)
T ss_pred EEEEEeCCCC---HHHHHHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcccCCCEEEEECCcH---
Confidence 4889877642 112233455677899999988875421110 0 0112223588888889921
Q ss_pred CCccccCCCCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHH
Q 017539 78 SLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGS 134 (369)
Q Consensus 78 ~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~ 134 (369)
-.+..++.+...++|||||=.|.
T Consensus 76 ----------------------------------T~L~aa~~~~~~~~PilGIN~G~ 98 (292)
T PRK01911 76 ----------------------------------TFLRTATYVGNSNIPILGINTGR 98 (292)
T ss_pred ----------------------------------HHHHHHHHhcCCCCCEEEEecCC
Confidence 12456666666789999999885
No 157
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=80.11 E-value=7.1 Score=33.15 Aligned_cols=64 Identities=19% Similarity=0.193 Sum_probs=38.3
Q ss_pred EEEecCcc-cCcCcccccchhHHHHHHHHCCCEEEEEcCC-CChhh----hhhhcCCCCEEEECCCCCCC
Q 017539 13 VLIVSRRS-VRKNKFVDFVGEYHLDLIVGYGAVPAIVPRV-SGVHM----LLDSFEPIHGVLLCEGEDID 76 (369)
Q Consensus 13 IgIv~~~~-~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~-~~~~~----l~~~l~~~DGlll~GG~did 76 (369)
|+|++--+ ...+...+.-......++++.|+.+...... .+.+. +.+.++.+|-||.+||...+
T Consensus 2 v~ii~~G~El~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~DlvittGG~g~g 71 (133)
T cd00758 2 VAIVTVSDELSQGQIEDTNGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEASREADLVLTTGGTGVG 71 (133)
T ss_pred EEEEEeCccccCCceEEchHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhcCCEEEECCCCCCC
Confidence 45554322 3334445555555666788999988765433 23333 33444569999999996543
No 158
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=79.51 E-value=7.4 Score=38.39 Aligned_cols=68 Identities=19% Similarity=0.205 Sum_probs=44.0
Q ss_pred CcEEEEecCcc-cCcCcccccchhHHHHHHHHCCCEEEEEcCC-CChhhhh----hhcCC-CCEEEECCCCCCCC
Q 017539 10 LPRVLIVSRRS-VRKNKFVDFVGEYHLDLIVGYGAVPAIVPRV-SGVHMLL----DSFEP-IHGVLLCEGEDIDP 77 (369)
Q Consensus 10 ~P~IgIv~~~~-~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~-~~~~~l~----~~l~~-~DGlll~GG~didp 77 (369)
+|+|+|++.-+ ...+...|........++.+.|+.++..... .+.+.+. +.++. +|-||++||..++|
T Consensus 159 ~~rv~II~TG~Ev~~G~i~D~~~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~ai~~~~~~g~DlIItTGGtsvg~ 233 (312)
T cd03522 159 PLRVGLIVTGSEVYGGRIEDKFGPVLRARLAALGVELVEQVIVPHDEAAIAAAIAEALEAGAELLILTGGASVDP 233 (312)
T ss_pred CCEEEEEEcCCcCCCCcEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhcCCCCEEEEeCCcccCC
Confidence 68999997543 4445555555556667789999988754432 2334333 33344 89999999976654
No 159
>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional
Probab=79.48 E-value=6.2 Score=40.40 Aligned_cols=68 Identities=13% Similarity=0.034 Sum_probs=40.9
Q ss_pred CcEEEEecCccc--------CcCcccccchhHHHHHHHHCCCEEEEEcCC-CChhhhhh----hcCCCCEEEECCCCCCC
Q 017539 10 LPRVLIVSRRSV--------RKNKFVDFVGEYHLDLIVGYGAVPAIVPRV-SGVHMLLD----SFEPIHGVLLCEGEDID 76 (369)
Q Consensus 10 ~P~IgIv~~~~~--------~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~-~~~~~l~~----~l~~~DGlll~GG~did 76 (369)
+|+|+|++.-+. ..++.++.-......++++.|+.++.+... ++.+.+.+ ..+.+|-||.+||.+++
T Consensus 177 ~prV~iistGdEl~~~~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~~~~DlvIttGG~S~G 256 (411)
T PRK10680 177 KVRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVSVG 256 (411)
T ss_pred CCEEEEEccCCeEeCCCCCCCCCEEEEhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhccCCCEEEEcCCCCCC
Confidence 799999975431 122333332223445688899988755433 34444433 34579999999997544
Q ss_pred C
Q 017539 77 P 77 (369)
Q Consensus 77 p 77 (369)
+
T Consensus 257 ~ 257 (411)
T PRK10680 257 E 257 (411)
T ss_pred C
Confidence 3
No 160
>COG4242 CphB Cyanophycinase and related exopeptidases [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=77.89 E-value=6 Score=37.77 Aligned_cols=85 Identities=15% Similarity=0.194 Sum_probs=58.0
Q ss_pred ccchhHHHHHHHHCCCEEEEE---cC--CCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCC
Q 017539 28 DFVGEYHLDLIVGYGAVPAIV---PR--VSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSD 102 (369)
Q Consensus 28 ~~v~~~~l~~l~~~Ga~~viv---p~--~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~ 102 (369)
-.+++.|.+..+..|+.-|-+ .+ +.+.+.+...++.++||+++|| |...|-.
T Consensus 66 ~~iG~~y~rife~~gv~~v~ildir~R~~a~~s~~~~~v~~a~gIfftGG---DQ~ri~~-------------------- 122 (293)
T COG4242 66 RAIGGNYIRIFEMMGVEEVQILDIRNREDASSSDIVAKVENATGIFFTGG---DQLRIIG-------------------- 122 (293)
T ss_pred hhhccchhhHHHHhccceeEEEeeecccccchHHHHHHHHhCceEEEecC---cceeeee--------------------
Confidence 467788999999999766533 22 2234455667789999999999 4333321
Q ss_pred CccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHH
Q 017539 103 TAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNV 139 (369)
Q Consensus 103 ~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~ 139 (369)
..+|.-.++.|++...+++-+-|+--|.-+|..
T Consensus 123 ----~lkdTpl~~~ir~r~r~G~avgGTSAGAavM~~ 155 (293)
T COG4242 123 ----SLKDTPLMAAIRQRVRRGIAVGGTSAGAAVMSD 155 (293)
T ss_pred ----eccCCHHHHHHHHHHhcCceecccccchhhcCC
Confidence 112333356777777788999999999888865
No 161
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=77.82 E-value=7.7 Score=39.83 Aligned_cols=67 Identities=19% Similarity=0.154 Sum_probs=40.8
Q ss_pred CcEEEEecCccc-C-------cCcccccchhHHHHHHHHCCCEEEEEcCC-CChhhh----hhhcCCCCEEEECCCCCCC
Q 017539 10 LPRVLIVSRRSV-R-------KNKFVDFVGEYHLDLIVGYGAVPAIVPRV-SGVHML----LDSFEPIHGVLLCEGEDID 76 (369)
Q Consensus 10 ~P~IgIv~~~~~-~-------~~~~~~~v~~~~l~~l~~~Ga~~vivp~~-~~~~~l----~~~l~~~DGlll~GG~did 76 (369)
+|+|+|++.-+. . .+...+.-......++++.|+.++..... ++.+.+ .+.++.+|-||.+||.+.+
T Consensus 193 ~prV~IisTGdEl~~~g~~~~~g~i~dsN~~~L~a~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlIItTGG~S~G 272 (419)
T PRK14690 193 PLRVAVLSTGDELVEPGALAEVGQIYDANRPMLLALARRWGHAPVDLGRVGDDRAALAARLDRAAAEADVILTSGGASAG 272 (419)
T ss_pred CCEEEEEEccccccCCCCCCCCCeEEeCHHHHHHHHHHHCCCEEEEEeeeCCCHHHHHHHHHHhCccCCEEEEcCCccCC
Confidence 799999965431 1 23334433334445688899988755433 233433 3344579999999996543
No 162
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=77.69 E-value=5.3 Score=36.63 Aligned_cols=68 Identities=12% Similarity=0.045 Sum_probs=37.4
Q ss_pred CcEEEEecCcc-cCcCcccccchhHHHHHHHHCCCE---E--EEEcCCCC--hhhhhhhcC--CCCEEEECCCCCCCC
Q 017539 10 LPRVLIVSRRS-VRKNKFVDFVGEYHLDLIVGYGAV---P--AIVPRVSG--VHMLLDSFE--PIHGVLLCEGEDIDP 77 (369)
Q Consensus 10 ~P~IgIv~~~~-~~~~~~~~~v~~~~l~~l~~~Ga~---~--vivp~~~~--~~~l~~~l~--~~DGlll~GG~didp 77 (369)
+++++|++--+ ...+...+.-+.....++.+.|+. + .++|-+.. .+.+.+.++ .+|-||.+||.++++
T Consensus 3 ~~~~aIItvSd~~~~G~i~D~ng~~L~~~L~~~G~~g~~v~~~iVpDd~~~I~~aL~~a~~~~~~DlIITTGGtg~g~ 80 (193)
T PRK09417 3 TLKIGLVSISDRASSGVYEDKGIPALEEWLASALTSPFEIETRLIPDEQDLIEQTLIELVDEMGCDLVLTTGGTGPAR 80 (193)
T ss_pred CcEEEEEEEcCcCCCCceeechHHHHHHHHHHcCCCCceEEEEECCCCHHHHHHHHHHHhhcCCCCEEEECCCCCCCC
Confidence 35677764322 233444555555566678888643 2 24442211 123444443 699999999976554
No 163
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=77.30 E-value=13 Score=38.09 Aligned_cols=66 Identities=15% Similarity=0.140 Sum_probs=42.2
Q ss_pred CcEEEEecCccc--C------cCcccccchhHHHHHHHHCCCEEEEEcCCC-Chh----hhhhhcCCCCEEEECCCCCC
Q 017539 10 LPRVLIVSRRSV--R------KNKFVDFVGEYHLDLIVGYGAVPAIVPRVS-GVH----MLLDSFEPIHGVLLCEGEDI 75 (369)
Q Consensus 10 ~P~IgIv~~~~~--~------~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~-~~~----~l~~~l~~~DGlll~GG~di 75 (369)
+|+|+|++.-+. . .++.++.-.......++++|++++...... +++ .+.+.++.+|-||.+||.++
T Consensus 176 kprV~IisTGdELv~~~~~l~~gqI~dsN~~~l~a~l~~~G~e~~~~giv~Dd~~~l~~~i~~a~~~~DviItsGG~Sv 254 (404)
T COG0303 176 KPRVAIISTGDELVEPGQPLEPGQIYDSNSYMLAALLERAGGEVVDLGIVPDDPEALREAIEKALSEADVIITSGGVSV 254 (404)
T ss_pred CCEEEEEecCccccCCCCCCCCCeEEecCHHHHHHHHHHcCCceeeccccCCCHHHHHHHHHHhhhcCCEEEEeCCccC
Confidence 699999976431 1 122344333345567888999998766543 333 34445557999999999643
No 164
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=76.15 E-value=12 Score=32.63 Aligned_cols=65 Identities=12% Similarity=0.118 Sum_probs=38.7
Q ss_pred EEEEecC-cccCcCcccccchhHHHHHHHHCCCEEEEEcCC-CChhhhhh----hcC--CCCEEEECCCCCCC
Q 017539 12 RVLIVSR-RSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRV-SGVHMLLD----SFE--PIHGVLLCEGEDID 76 (369)
Q Consensus 12 ~IgIv~~-~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~-~~~~~l~~----~l~--~~DGlll~GG~did 76 (369)
+++|++- .....+...+.-......++++.|+.++..... .+.+.+.+ .++ .+|-||.+||...+
T Consensus 2 ~~~ii~~~~e~~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG~s~g 74 (152)
T cd00886 2 RAAVLTVSDTRSAGEAEDRSGPALVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTGGTGLA 74 (152)
T ss_pred EEEEEEEcCcccCCCCccchHHHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCC
Confidence 3555532 223444555555555666799999988755433 34444433 334 69999999996543
No 165
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=76.12 E-value=12 Score=33.70 Aligned_cols=65 Identities=23% Similarity=0.349 Sum_probs=39.1
Q ss_pred EEEecCcccC-cCcccccchhHHHHHHHHCCCEE---EEEcCCCC--hhhhhhhcCC-CCEEEECCCCCCCC
Q 017539 13 VLIVSRRSVR-KNKFVDFVGEYHLDLIVGYGAVP---AIVPRVSG--VHMLLDSFEP-IHGVLLCEGEDIDP 77 (369)
Q Consensus 13 IgIv~~~~~~-~~~~~~~v~~~~l~~l~~~Ga~~---vivp~~~~--~~~l~~~l~~-~DGlll~GG~didp 77 (369)
++|++--+.+ .+...|--+....++++++|..+ .+||-+.. ...+.+.... +|.||.+||.++.|
T Consensus 10 ~~VvTVSd~r~~~~~~D~sG~~l~~~L~~ag~~~~~~~iV~D~~~~I~~~l~~~~~~~~DvvlttGGTG~t~ 81 (169)
T COG0521 10 IAVVTVSDRRSTGEYEDKSGPLLVELLEEAGHNVAAYTIVPDDKEQIRATLIALIDEDVDVVLTTGGTGITP 81 (169)
T ss_pred EEEEEEecccccCCccccchhHHHHHHHHcCCccceEEEeCCCHHHHHHHHHHHhcCCCCEEEEcCCccCCC
Confidence 5555422222 34444777888899999999766 35553211 1122222233 89999999987654
No 166
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=76.04 E-value=8.4 Score=39.05 Aligned_cols=67 Identities=21% Similarity=0.200 Sum_probs=42.7
Q ss_pred CcEEEEecCcc-cC-------cCcccccchhHHHHHHHHCCCEEEEEcCCC-Chh----hhhhhcCCCCEEEECCCCCCC
Q 017539 10 LPRVLIVSRRS-VR-------KNKFVDFVGEYHLDLIVGYGAVPAIVPRVS-GVH----MLLDSFEPIHGVLLCEGEDID 76 (369)
Q Consensus 10 ~P~IgIv~~~~-~~-------~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~-~~~----~l~~~l~~~DGlll~GG~did 76 (369)
+|+|+|++.-+ .. .+...+.-......++++.|+.++.+.... +.+ .+.+.++.+|-||.+||.+..
T Consensus 168 ~~rv~ii~tGdEl~~~g~~~~~g~i~dsn~~~l~~~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~~~~DliittGG~s~g 247 (394)
T cd00887 168 RPRVAIISTGDELVEPGEPLAPGQIYDSNSYMLAALLRELGAEVVDLGIVPDDPEALREALEEALEEADVVITSGGVSVG 247 (394)
T ss_pred CCEEEEEeCCCcccCCCCCCCCCEEEEChHHHHHHHHHHCCCEEEEeceeCCCHHHHHHHHHHHhhCCCEEEEeCCCCCC
Confidence 79999996533 11 344455444445567888999988665443 333 333444569999999996543
No 167
>PRK14497 putative molybdopterin biosynthesis protein MoeA/unknown domain fusion protein; Provisional
Probab=75.75 E-value=9.1 Score=40.66 Aligned_cols=66 Identities=9% Similarity=0.112 Sum_probs=40.4
Q ss_pred CcEEEEecCcc-c-------CcCcccccchhHHHH-HHHHCCCEEEEEcCC-CChhhhhh----hcCCCCEEEECCCCCC
Q 017539 10 LPRVLIVSRRS-V-------RKNKFVDFVGEYHLD-LIVGYGAVPAIVPRV-SGVHMLLD----SFEPIHGVLLCEGEDI 75 (369)
Q Consensus 10 ~P~IgIv~~~~-~-------~~~~~~~~v~~~~l~-~l~~~Ga~~vivp~~-~~~~~l~~----~l~~~DGlll~GG~di 75 (369)
+|+|+|++.-+ . ..++.++. +.+.+. ++++.|+.++.++.. ++.+.+.+ .++.+|-||++||.+.
T Consensus 179 rprV~IisTGdELv~pg~~l~~G~I~ds-Ns~~L~a~l~~~G~~v~~~~iv~Dd~e~i~~~l~~al~~~DlVIttGGtS~ 257 (546)
T PRK14497 179 KPKIYLIATGDELVEPGNSLSPGKIYES-NLHYLYSKLKSEGYKIVGLSLLSDDKESIKNEIKRAISVADVLILTGGTSA 257 (546)
T ss_pred CCEEEEEEcCCcccCCCCCCCCCcEEEh-HHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhhcCCEEEEcCCccC
Confidence 79999996543 1 12333333 333444 588899988755433 34444433 4457999999999654
Q ss_pred C
Q 017539 76 D 76 (369)
Q Consensus 76 d 76 (369)
+
T Consensus 258 G 258 (546)
T PRK14497 258 G 258 (546)
T ss_pred C
Confidence 3
No 168
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=73.90 E-value=17 Score=33.35 Aligned_cols=58 Identities=9% Similarity=0.045 Sum_probs=35.3
Q ss_pred EEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhh----hc-CCCCEEEECCC
Q 017539 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLD----SF-EPIHGVLLCEG 72 (369)
Q Consensus 13 IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~----~l-~~~DGlll~GG 72 (369)
||++... ..+.+...+-....+.+++.|..++++....+++...+ .+ ..+||||+.++
T Consensus 2 Ig~i~~~--~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~vdgii~~~~ 64 (273)
T cd06305 2 IAVVRYG--GSGDFDQAYLAGTKAEAEALGGDLRVYDAGGDDAKQADQIDQAIAQKVDAIIIQHG 64 (273)
T ss_pred eEEEeec--CCCcHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 5665432 12345555556667788899999888765444332211 11 27999999865
No 169
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=72.42 E-value=16 Score=32.62 Aligned_cols=53 Identities=17% Similarity=0.083 Sum_probs=33.9
Q ss_pred CcCcccccchhHHHHHHHHCCCEEEEEcCC-CCh----hhhhhhcCCCCEEEECCCCC
Q 017539 22 RKNKFVDFVGEYHLDLIVGYGAVPAIVPRV-SGV----HMLLDSFEPIHGVLLCEGED 74 (369)
Q Consensus 22 ~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~-~~~----~~l~~~l~~~DGlll~GG~d 74 (369)
..+...+.-.....+++.+.|+.+..+... .+. +.+.+.++.+|-||.+||-+
T Consensus 12 ~~G~i~d~n~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~dlVIttGG~G 69 (170)
T cd00885 12 LSGQIVDTNAAFLAKELAELGIEVYRVTVVGDDEDRIAEALRRASERADLVITTGGLG 69 (170)
T ss_pred cCCeEEEhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 345555655556667889999887643322 233 33444456799999999864
No 170
>PRK14498 putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; Provisional
Probab=71.80 E-value=12 Score=40.38 Aligned_cols=68 Identities=22% Similarity=0.187 Sum_probs=42.9
Q ss_pred CcEEEEecCccc--------CcCcccccchhHHHHHHHHCCCEEEEEcCC-CChhhh----hhhcCCCCEEEECCCCCCC
Q 017539 10 LPRVLIVSRRSV--------RKNKFVDFVGEYHLDLIVGYGAVPAIVPRV-SGVHML----LDSFEPIHGVLLCEGEDID 76 (369)
Q Consensus 10 ~P~IgIv~~~~~--------~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~-~~~~~l----~~~l~~~DGlll~GG~did 76 (369)
+|+|+|++.-+. ..++..+.-......++++.|+.++..... ++.+.+ .+.++.+|-||.+||.+++
T Consensus 186 ~prv~vi~tG~El~~~~~~~~~g~i~dsn~~~l~~~l~~~g~~~~~~~~v~Dd~~~i~~~l~~~~~~~D~iIttGG~s~g 265 (633)
T PRK14498 186 KPRVGIISTGDELVEPGEPLKPGKIYDVNSYTLAAAVEEAGGEPVRYGIVPDDEEELEAALRKALKECDLVLLSGGTSAG 265 (633)
T ss_pred CcEEEEEecCccccCCCCCCCCCEEEEChHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEECCCCcCC
Confidence 699999965431 124445554445566788999988755432 333333 3334579999999997554
Q ss_pred C
Q 017539 77 P 77 (369)
Q Consensus 77 p 77 (369)
+
T Consensus 266 ~ 266 (633)
T PRK14498 266 A 266 (633)
T ss_pred C
Confidence 4
No 171
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=71.42 E-value=27 Score=32.26 Aligned_cols=61 Identities=15% Similarity=0.016 Sum_probs=37.7
Q ss_pred EEEEecCc-c----cCcCcccccchhHHHHHHHHCCCEEEEEcCCCC-hhhhhhhc--CCCCEEEECCC
Q 017539 12 RVLIVSRR-S----VRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSG-VHMLLDSF--EPIHGVLLCEG 72 (369)
Q Consensus 12 ~IgIv~~~-~----~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~-~~~l~~~l--~~~DGlll~GG 72 (369)
.|||+... + ...+.+...+.+...+.+++.|..+.++..... ...+.+.+ .++||||+.+.
T Consensus 5 ~i~vi~p~~~~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~v~~~~~~~~~~~~~~l~~~~~dgiii~~~ 73 (275)
T cd06295 5 TIALVVPEPHERDQSFSDPFFLSLLGGIADALAERGYDLLLSFVSSPDRDWLARYLASGRADGVILIGQ 73 (275)
T ss_pred EEEEEecCccccccccCCchHHHHHHHHHHHHHHcCCEEEEEeCCchhHHHHHHHHHhCCCCEEEEeCC
Confidence 57777532 1 133455555555566778889999888765433 33333333 37999999764
No 172
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=71.41 E-value=25 Score=32.39 Aligned_cols=59 Identities=12% Similarity=0.075 Sum_probs=36.7
Q ss_pred EEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhhc-CCCCEEEECCC
Q 017539 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 12 ~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~----l~~~l-~~~DGlll~GG 72 (369)
+|||+... ..+.+..-+-....+.+.+.|..+++.....+.+. +.... ..+||||+.++
T Consensus 1 ~Igvv~~~--~~~~~~~~~~~~i~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~ 64 (269)
T cd06281 1 TIGCLVSD--ITNPLLAQLFSGAEDRLRAAGYSLLIANSLNDPERELEILRSFEQRRMDGIIIAPG 64 (269)
T ss_pred CEEEEecC--CccccHHHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecC
Confidence 36666532 12455555666677888999999887755443321 22222 37999999865
No 173
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=70.81 E-value=16 Score=35.59 Aligned_cols=84 Identities=20% Similarity=0.155 Sum_probs=50.1
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCCh------h--hhhhhcCCCCEEEECCCCCCCCCCccc
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGV------H--MLLDSFEPIHGVLLCEGEDIDPSLYEA 82 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~------~--~l~~~l~~~DGlll~GG~didp~~y~~ 82 (369)
.+|||+.+... .....+.+...+++.+.|..+.+.+..... . ......+.+|-|+.-||-+
T Consensus 5 ~~v~iv~~~~k---~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDG-------- 73 (295)
T PRK01231 5 RNIGLIGRLGS---SSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIVVGGDG-------- 73 (295)
T ss_pred CEEEEEecCCC---HHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEEEeCcH--------
Confidence 47999977642 112334556678899999888776532110 0 0111223578888888821
Q ss_pred cCCCCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHH
Q 017539 83 ETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGS 134 (369)
Q Consensus 83 ~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~ 134 (369)
..+..++.+...++|++||=.|.
T Consensus 74 -----------------------------t~l~~~~~~~~~~~Pvlgin~G~ 96 (295)
T PRK01231 74 -----------------------------SLLGAARALARHNVPVLGINRGR 96 (295)
T ss_pred -----------------------------HHHHHHHHhcCCCCCEEEEeCCc
Confidence 12345555556789999999874
No 174
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=69.45 E-value=22 Score=32.89 Aligned_cols=58 Identities=5% Similarity=-0.033 Sum_probs=37.1
Q ss_pred EEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhc-----CCCCEEEECCC
Q 017539 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSF-----EPIHGVLLCEG 72 (369)
Q Consensus 13 IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l-----~~~DGlll~GG 72 (369)
||++... ..+.+...+.....+.+.+.|..+++.....+.+...+.+ ..+||||+.+.
T Consensus 2 igv~~~~--~~~~~~~~~~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~Dgiii~~~ 64 (282)
T cd06318 2 IGFSQYT--LNSPFFAALTEAAKAHAKALGYELISTDAQGDLTKQIADVEDLLTRGVNVLIINPV 64 (282)
T ss_pred eeEEecc--ccCHHHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 6666433 2356666677777888899999988776543432222222 27999999754
No 175
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=69.07 E-value=16 Score=39.20 Aligned_cols=67 Identities=15% Similarity=0.070 Sum_probs=40.9
Q ss_pred CcEEEEecCcc-cC-------cCcccccchhHHHHHHHHCCCEEEEEcCC-CChhhh----hhhcCCCCEEEECCCCCCC
Q 017539 10 LPRVLIVSRRS-VR-------KNKFVDFVGEYHLDLIVGYGAVPAIVPRV-SGVHML----LDSFEPIHGVLLCEGEDID 76 (369)
Q Consensus 10 ~P~IgIv~~~~-~~-------~~~~~~~v~~~~l~~l~~~Ga~~vivp~~-~~~~~l----~~~l~~~DGlll~GG~did 76 (369)
+|+|+|++.-+ .. .++..+.-......++++.|+.++.+... .+.+.+ .+.++.+|-||.+||.+++
T Consensus 367 ~prV~IistGdEl~~~g~~~~~g~i~dsn~~~L~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlIIttGG~s~G 446 (597)
T PRK14491 367 RPKVAVFSTGDEVQAPGETLKPNCIYDSNRFTIKAMAKKLGCEVIDLGIIEDSEAALEATLEQAAAQADVVISSGGVSVG 446 (597)
T ss_pred CCEEEEEecCCeeccCCCcCCCCcEEeCCHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhhcCCEEEEcCCccCC
Confidence 79999996543 11 13334433334556788999988654432 233333 3344579999999996543
No 176
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=68.49 E-value=29 Score=31.89 Aligned_cols=59 Identities=15% Similarity=0.146 Sum_probs=36.5
Q ss_pred EEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhhc-CCCCEEEECCC
Q 017539 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 12 ~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~----l~~~l-~~~DGlll~GG 72 (369)
+|||+... ..+.+...+.....+.+.+.|..+++.+...+.+. +.... .++||||+.+.
T Consensus 1 ~Igvi~~~--~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 64 (273)
T cd06292 1 LVGLLVPE--LSNPIFPAFAEAIEAALAQYGYTVLLCNTYRGGVSEADYVEDLLARGVRGVVFISS 64 (273)
T ss_pred CEEEEeCC--CcCchHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeCC
Confidence 36666532 23455566666777888889999988765433221 11111 37999999764
No 177
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=68.34 E-value=8.4 Score=31.19 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=20.3
Q ss_pred HHHHHHHCCCEEEEEcCCCChhhhh-hhcCCCCEEEECCCCC
Q 017539 34 HLDLIVGYGAVPAIVPRVSGVHMLL-DSFEPIHGVLLCEGED 74 (369)
Q Consensus 34 ~l~~l~~~Ga~~vivp~~~~~~~l~-~~l~~~DGlll~GG~d 74 (369)
.++.+.. ...++++-+.. +.+. .....+.||||+||..
T Consensus 34 ~~~~~~~--~~lvIt~gdR~-di~~~a~~~~i~~iIltg~~~ 72 (105)
T PF07085_consen 34 FLEYLKP--GDLVITPGDRE-DIQLAAIEAGIACIILTGGLE 72 (105)
T ss_dssp HHHCHHT--TEEEEEETT-H-HHHHHHCCTTECEEEEETT--
T ss_pred HHhhcCC--CeEEEEeCCcH-HHHHHHHHhCCCEEEEeCCCC
Confidence 3444444 45556655432 3333 3334689999999853
No 178
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=68.34 E-value=28 Score=31.70 Aligned_cols=58 Identities=10% Similarity=-0.034 Sum_probs=34.4
Q ss_pred EEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhh----hhhc-CCCCEEEECCC
Q 017539 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHML----LDSF-EPIHGVLLCEG 72 (369)
Q Consensus 13 IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l----~~~l-~~~DGlll~GG 72 (369)
|||+... ..+.+..-+-....+.+++.|..+++.....+.+.. .... ..+||||+.++
T Consensus 2 igvv~~~--~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 64 (266)
T cd06282 2 VGVVLPS--LANPVFAECVQGIQEEARAAGYSLLLATTDYDAEREADAVETLLRQRVDGLILTVA 64 (266)
T ss_pred eEEEeCC--CCcchHHHHHHHHHHHHHHCCCEEEEeeCCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 5666532 123444445556667788899999987654333221 1111 36999999765
No 179
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=68.07 E-value=15 Score=35.44 Aligned_cols=82 Identities=21% Similarity=0.203 Sum_probs=49.5
Q ss_pred EEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCC----hh--hhhhhc-CCCCEEEECCCCCCCCCCccccC
Q 017539 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSG----VH--MLLDSF-EPIHGVLLCEGEDIDPSLYEAET 84 (369)
Q Consensus 12 ~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~----~~--~l~~~l-~~~DGlll~GG~didp~~y~~~~ 84 (369)
+|+|+.+... .....+.....+|+.+.|..+.+.+.... .. ...... ..+|.||..||-+
T Consensus 2 ~v~iv~~~~k---~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGGDG---------- 68 (277)
T PRK03708 2 RFGIVARRDK---EEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEEMDVDFIIAIGGDG---------- 68 (277)
T ss_pred EEEEEecCCC---HHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccccccccCCCEEEEEeCcH----------
Confidence 5888877642 11223455567789999998887642111 00 000111 2589999999921
Q ss_pred CCCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHH
Q 017539 85 SNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGS 134 (369)
Q Consensus 85 ~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~ 134 (369)
..+.+++ ....++|++||=.|.
T Consensus 69 ---------------------------TlL~a~~-~~~~~~pi~gIn~G~ 90 (277)
T PRK03708 69 ---------------------------TILRIEH-KTKKDIPILGINMGT 90 (277)
T ss_pred ---------------------------HHHHHHH-hcCCCCeEEEEeCCC
Confidence 1235556 556689999999886
No 180
>PRK13017 dihydroxy-acid dehydratase; Provisional
Probab=68.03 E-value=13 Score=39.76 Aligned_cols=72 Identities=22% Similarity=0.214 Sum_probs=45.7
Q ss_pred CCCCCCCCcEEEEecCccc--CcCcccccchhHHHHHHHHCCCEEEEEcCCC------------Chhhhhhhc------C
Q 017539 3 AHDLSVILPRVLIVSRRSV--RKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS------------GVHMLLDSF------E 62 (369)
Q Consensus 3 ~~~~~~~~P~IgIv~~~~~--~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~------------~~~~l~~~l------~ 62 (369)
..|+...+|.|||+..++. ..|....-+.+.--+-+.++|+.|+.++... +.+.+.+.. .
T Consensus 40 ~ed~~~~KP~IgI~ns~se~~Pch~hl~~la~~vk~gI~~aGG~p~ef~ti~v~d~~~~~~~l~sRelIAd~iE~~~~a~ 119 (596)
T PRK13017 40 REELQSGKPIIGIAQTGSDLSPCNRHHLELAERVKEGIRDAGGIPMEFPVHPIQETGKRPTAALDRNLAYLGLVEILYGY 119 (596)
T ss_pred hHHhccCCCEEEEEecccCCcCchhhHHHHHHHHHHHHHHcCCeeEecccccccccCCCcccccCHHHHHHHHHHHHhcC
Confidence 3456556999999987753 3344444555555667889999999776421 111121111 2
Q ss_pred CCCEEEECCCCC
Q 017539 63 PIHGVLLCEGED 74 (369)
Q Consensus 63 ~~DGlll~GG~d 74 (369)
.+||+|+-+|-|
T Consensus 120 ~~Dg~V~i~gCD 131 (596)
T PRK13017 120 PLDGVVLTTGCD 131 (596)
T ss_pred CcceEEEeccCC
Confidence 699999999853
No 181
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=67.91 E-value=31 Score=31.63 Aligned_cols=58 Identities=7% Similarity=0.022 Sum_probs=36.5
Q ss_pred EEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhc-----CCCCEEEECCC
Q 017539 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSF-----EPIHGVLLCEG 72 (369)
Q Consensus 13 IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l-----~~~DGlll~GG 72 (369)
|||+... ..+.+...+.....+++...|..+.+.....+.+...+.+ .++|||++.+.
T Consensus 2 igvi~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 64 (264)
T cd06274 2 IGLIIPD--LENRSFARIAKRLEALARERGYQLLIACSDDDPETERETVETLIARQVDALIVAGS 64 (264)
T ss_pred EEEEecc--ccCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 5565432 2345555666666778889999988876654433222222 27999999875
No 182
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=67.48 E-value=24 Score=29.74 Aligned_cols=50 Identities=16% Similarity=0.117 Sum_probs=30.9
Q ss_pred cccchhHHHHHHHHCCCEEEEEcCC-CChhhhh----hhcCCCCEEEECCCCCCC
Q 017539 27 VDFVGEYHLDLIVGYGAVPAIVPRV-SGVHMLL----DSFEPIHGVLLCEGEDID 76 (369)
Q Consensus 27 ~~~v~~~~l~~l~~~Ga~~vivp~~-~~~~~l~----~~l~~~DGlll~GG~did 76 (369)
.+.-......++++.|+.++..... .+.+.+. +.++.+|-||.+||..++
T Consensus 16 ~d~~~~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~~~~dliittGG~g~g 70 (135)
T smart00852 16 YDSNGPALAELLTELGIEVTRYVIVPDDKEAIKEALREALERADLVITTGGTGPG 70 (135)
T ss_pred ccCcHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHHhCCCEEEEcCCCCCC
Confidence 4454555667799999877533221 3434333 334579999999996543
No 183
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=67.17 E-value=22 Score=34.86 Aligned_cols=82 Identities=16% Similarity=0.141 Sum_probs=48.1
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhh---h-hhhcCCCCEEEECCCCCCCCCCccccCCC
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM---L-LDSFEPIHGVLLCEGEDIDPSLYEAETSN 86 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~---l-~~~l~~~DGlll~GG~didp~~y~~~~~~ 86 (369)
.+|+++.++.. ...........+++.+.|..+.+.+....... . ...-+.+|-+|..||-+
T Consensus 4 kkv~lI~n~~~---~~~~~~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDG------------ 68 (305)
T PRK02645 4 KQVIIAYKAGS---SQAKEAAERCAKQLEARGCKVLMGPSGPKDNPYPVFLASASELIDLAIVLGGDG------------ 68 (305)
T ss_pred CEEEEEEeCCC---HHHHHHHHHHHHHHHHCCCEEEEecCchhhccccchhhccccCcCEEEEECCcH------------
Confidence 46788877521 11122344557788899999877653221111 0 11123588888888821
Q ss_pred CChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeH
Q 017539 87 LSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICR 132 (369)
Q Consensus 87 ~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGICl 132 (369)
-.+..++.....++|++||=.
T Consensus 69 -------------------------T~l~~~~~~~~~~~pv~gin~ 89 (305)
T PRK02645 69 -------------------------TVLAAARHLAPHDIPILSVNV 89 (305)
T ss_pred -------------------------HHHHHHHHhccCCCCEEEEec
Confidence 123455555567899999987
No 184
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=67.07 E-value=18 Score=38.00 Aligned_cols=85 Identities=19% Similarity=0.163 Sum_probs=48.9
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHH-HCCCEEEEEcCCCCh-----------------hhhhhhcCCCCEEEECC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIV-GYGAVPAIVPRVSGV-----------------HMLLDSFEPIHGVLLCE 71 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~-~~Ga~~vivp~~~~~-----------------~~l~~~l~~~DGlll~G 71 (369)
...|||+.++... -...+....++|+. ..|..+++-+..... ..+.+....+|-||.-|
T Consensus 194 p~~VgIV~n~~k~---~a~el~~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIsiG 270 (508)
T PLN02935 194 PQTVLIITKPNST---SVRVLCAEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKEILLLHTKVDLVITLG 270 (508)
T ss_pred CCEEEEEecCCCH---HHHHHHHHHHHHHHhcCCCEEEEechhhhhhccccccccccccccccchhhhcccCCCEEEEEC
Confidence 4679999776421 12223445677887 477777664321110 01111123588888889
Q ss_pred CCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHH
Q 017539 72 GEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGS 134 (369)
Q Consensus 72 G~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~ 134 (369)
|-+ -.+.+++.+...++|||||=+|.
T Consensus 271 GDG-------------------------------------TlL~Aar~~~~~~iPILGIN~G~ 296 (508)
T PLN02935 271 GDG-------------------------------------TVLWAASMFKGPVPPVVPFSMGS 296 (508)
T ss_pred CcH-------------------------------------HHHHHHHHhccCCCcEEEEeCCC
Confidence 821 12455666656679999998773
No 185
>COG4285 Uncharacterized conserved protein [Function unknown]
Probab=66.80 E-value=7.1 Score=36.57 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=20.8
Q ss_pred HHHHHHHHHcCCCEEEEeHHHHHHHHHhCCee
Q 017539 114 LRLAKLCLERNIPYLGICRGSQVLNVACGGTL 145 (369)
Q Consensus 114 ~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l 145 (369)
.+.|...++++--+||||.|. ++|+..
T Consensus 72 ~a~i~~yvk~GG~fLGiCAG~-----YFg~~~ 98 (253)
T COG4285 72 TARIKNYVKEGGNFLGICAGG-----YFGSAY 98 (253)
T ss_pred hhhHHHHHhcCCeEEEEeccc-----cccceE
Confidence 367777888899999999883 566653
No 186
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=64.43 E-value=21 Score=34.51 Aligned_cols=64 Identities=17% Similarity=0.215 Sum_probs=39.4
Q ss_pred HHHHHHHHCCCEEEEEcCCCCh----h----hhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCc
Q 017539 33 YHLDLIVGYGAVPAIVPRVSGV----H----MLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTA 104 (369)
Q Consensus 33 ~~l~~l~~~Ga~~vivp~~~~~----~----~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~ 104 (369)
...+|+.+.|..+.+-+..... . ...+..+.+|-+|.-||-+
T Consensus 4 ~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGGDG------------------------------ 53 (272)
T PRK02231 4 NLFHWLKERGYQVLVEKEIAEQLNLPENHLASLEEIGQRAQLAIVIGGDG------------------------------ 53 (272)
T ss_pred HHHHHHHHCCCEEEEecchhhhcCccccccCChHHhCcCCCEEEEECCcH------------------------------
Confidence 3567888899888775432110 0 1122223588888889921
Q ss_pred cCchhhHHHHHHHHHHHHcCCCEEEEeHH
Q 017539 105 IDKEKDSIELRLAKLCLERNIPYLGICRG 133 (369)
Q Consensus 105 ~~~~rd~~e~~li~~~~e~~iPiLGIClG 133 (369)
-.+..++.+...++|||||=.|
T Consensus 54 -------T~L~aa~~~~~~~~PilgIn~G 75 (272)
T PRK02231 54 -------NMLGRARVLAKYDIPLIGINRG 75 (272)
T ss_pred -------HHHHHHHHhccCCCcEEEEeCC
Confidence 1245556555678999999877
No 187
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=64.14 E-value=35 Score=31.89 Aligned_cols=60 Identities=12% Similarity=-0.016 Sum_probs=36.5
Q ss_pred EEEecCcc---cCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhh-cCCCCEEEECCC
Q 017539 13 VLIVSRRS---VRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDS-FEPIHGVLLCEG 72 (369)
Q Consensus 13 IgIv~~~~---~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~-l~~~DGlll~GG 72 (369)
|||+.... ...+.+...+-....+.+++.|..+++++.....+.+... -..+|||++.+.
T Consensus 2 igvi~p~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~dgiii~~~ 65 (283)
T cd06279 2 VGVVLTDSLSYAFSDPVASQFLAGVAEVLDAAGVNLLLLPASSEDSDSALVVSALVDGFIVYGV 65 (283)
T ss_pred EEEEeCCcccccccCccHHHHHHHHHHHHHHCCCEEEEecCccHHHHHHHHHhcCCCEEEEeCC
Confidence 56664321 1345555555666677888899999888754322222221 137999999865
No 188
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=64.13 E-value=43 Score=30.57 Aligned_cols=58 Identities=19% Similarity=0.159 Sum_probs=35.9
Q ss_pred EEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChh----hhhhhc--CCCCEEEECCC
Q 017539 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVH----MLLDSF--EPIHGVLLCEG 72 (369)
Q Consensus 13 IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~----~l~~~l--~~~DGlll~GG 72 (369)
|||+... ..+.+...+.....+++++.|..+++.....+.+ .+.+.+ ..+||||+.++
T Consensus 2 I~vi~~~--~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 65 (270)
T cd01545 2 IGLLYDN--PSPGYVSEIQLGALDACRDTGYQLVIEPCDSGSPDLAERVRALLQRSRVDGVILTPP 65 (270)
T ss_pred EEEEEcC--CCcccHHHHHHHHHHHHHhCCCeEEEEeCCCCchHHHHHHHHHHHHCCCCEEEEeCC
Confidence 5665532 1245555666666778889999988876543221 222222 36999999866
No 189
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=64.10 E-value=41 Score=30.67 Aligned_cols=58 Identities=10% Similarity=0.128 Sum_probs=35.8
Q ss_pred EEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhhc-CCCCEEEECCC
Q 017539 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 13 IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~----l~~~l-~~~DGlll~GG 72 (369)
||++.... .+.+...+-....+++.+.|..++++....+.+. +.... ..+||||+.+.
T Consensus 2 igvv~~~~--~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 64 (265)
T cd06299 2 IGVIVPDI--RNPYFASLATAIQDAASAAGYSTIIGNSDENPETENRYLDNLLSQRVDGIIVVPH 64 (265)
T ss_pred EEEEecCC--CCccHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 66665321 2345555556667788899999988865444321 12222 27999999875
No 190
>PLN02727 NAD kinase
Probab=64.08 E-value=23 Score=39.93 Aligned_cols=84 Identities=15% Similarity=0.135 Sum_probs=50.0
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHC-CCEEEEEcCCCCh---------------hhhhhhcCCCCEEEECCCC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGY-GAVPAIVPRVSGV---------------HMLLDSFEPIHGVLLCEGE 73 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~-Ga~~vivp~~~~~---------------~~l~~~l~~~DGlll~GG~ 73 (369)
..+||||..... ... ......++||... |..+++=+...+. ....+..+.+|-||.-||-
T Consensus 678 ~rtVgIV~K~~~---ea~-~~~~eL~~~L~~~~gi~V~VE~~~a~~l~~~~~~~~~~~~~~~~~~el~~~~DLVIvLGGD 753 (986)
T PLN02727 678 PKTVLLLKKLGQ---ELM-EEAKEVASFLYHQEKMNVLVEPDVHDIFARIPGFGFVQTFYSQDTSDLHERVDFVACLGGD 753 (986)
T ss_pred CCEEEEEcCCcH---HHH-HHHHHHHHHHHhCCCeEEEEecchHHHhhccccccccceecccchhhcccCCCEEEEECCc
Confidence 457999987643 222 2334457888887 7766653322110 0011222357888888882
Q ss_pred CCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHH
Q 017539 74 DIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGS 134 (369)
Q Consensus 74 didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~ 134 (369)
.-.+..++.+...++|||||=+|.
T Consensus 754 -------------------------------------GTlLrAar~~~~~~iPILGINlGr 777 (986)
T PLN02727 754 -------------------------------------GVILHASNLFRGAVPPVVSFNLGS 777 (986)
T ss_pred -------------------------------------HHHHHHHHHhcCCCCCEEEEeCCC
Confidence 123456666666789999999884
No 191
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=63.93 E-value=27 Score=35.29 Aligned_cols=87 Identities=15% Similarity=0.184 Sum_probs=53.6
Q ss_pred HHHHHHHHCCCEEEEEcCCCChhhhhhhcC-CCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhH
Q 017539 33 YHLDLIVGYGAVPAIVPRVSGVHMLLDSFE-PIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDS 111 (369)
Q Consensus 33 ~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~-~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~ 111 (369)
..++||++.--.|+++.-..+.++.....+ .+|||+++|.+.-.. +..+. . .
T Consensus 214 ~di~wlr~~~~~PiivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrql---d~~~~----------------------t--~ 266 (367)
T PLN02493 214 KDVQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQL---DYVPA----------------------T--I 266 (367)
T ss_pred HHHHHHHhccCCCEEeecCCCHHHHHHHHHcCCCEEEECCCCCCCC---CCchh----------------------H--H
Confidence 457899988778998876655555443333 899999997331010 11110 0 0
Q ss_pred HHHHHHHHHHHcCCCEE---EEeHHHHHH-HHHhCCeee
Q 017539 112 IELRLAKLCLERNIPYL---GICRGSQVL-NVACGGTLY 146 (369)
Q Consensus 112 ~e~~li~~~~e~~iPiL---GIClG~QlL-~~a~GG~l~ 146 (369)
..+..+..++..++||+ ||..|..++ +.++|++..
T Consensus 267 ~~L~ei~~av~~~~~vi~dGGIr~G~Dv~KALALGA~aV 305 (367)
T PLN02493 267 SALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGI 305 (367)
T ss_pred HHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEE
Confidence 01222334444569999 999999998 567888744
No 192
>PRK03673 hypothetical protein; Provisional
Probab=63.21 E-value=26 Score=35.80 Aligned_cols=64 Identities=17% Similarity=0.184 Sum_probs=39.8
Q ss_pred CcEEEEecCcc-cCcCcccccchhHHHHHHHHCCCEEEEEcCC-CChhhh----hhhcCCCCEEEECCCC
Q 017539 10 LPRVLIVSRRS-VRKNKFVDFVGEYHLDLIVGYGAVPAIVPRV-SGVHML----LDSFEPIHGVLLCEGE 73 (369)
Q Consensus 10 ~P~IgIv~~~~-~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~-~~~~~l----~~~l~~~DGlll~GG~ 73 (369)
+|++.|++--+ .-.+...+-=.....+++...|..+...... ++.+.+ ...++..|-||++||-
T Consensus 1 ~~~v~Iis~GdEll~G~i~dtN~~~la~~L~~~G~~v~~~~~v~D~~~~i~~~l~~a~~~~DlVI~tGGl 70 (396)
T PRK03673 1 MLRVEMLSTGDEVLHGQIVDTNAAWLADFFFHQGLPLSRRNTVGDNLDALVAILRERSQHADVLIVNGGL 70 (396)
T ss_pred CCEEEEEEecccCCCCeEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhccCCEEEEcCCC
Confidence 47888887543 3345545543334455688999988644433 344444 3345579999999984
No 193
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=63.19 E-value=36 Score=31.25 Aligned_cols=58 Identities=5% Similarity=0.037 Sum_probs=35.8
Q ss_pred EEEecCcccCcCcccccchhHHHHHHHH-CCCEEEEEcCCCChhh----hhhhc-CCCCEEEECCC
Q 017539 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVG-YGAVPAIVPRVSGVHM----LLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 13 IgIv~~~~~~~~~~~~~v~~~~l~~l~~-~Ga~~vivp~~~~~~~----l~~~l-~~~DGlll~GG 72 (369)
|||+... ..+.+...+.....+.+.+ .|..+++.....+.+. +...+ ..+||+|+.+.
T Consensus 2 igvi~~~--~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 65 (272)
T cd06301 2 IGVSMAN--FDDNFLTLLRNAMKEHAKVLGGVELQFEDAKNDVATQLSQVENFIAQGVDAIIVVPV 65 (272)
T ss_pred eeEeecc--cCCHHHHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 5666432 2356666666777778888 8988887654333322 22212 27999999764
No 194
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=62.35 E-value=42 Score=30.72 Aligned_cols=59 Identities=5% Similarity=-0.081 Sum_probs=36.6
Q ss_pred EEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhh-cCCCCEEEECCC
Q 017539 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDS-FEPIHGVLLCEG 72 (369)
Q Consensus 12 ~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~----l~~~-l~~~DGlll~GG 72 (369)
+|||+... ..+.+..-+....-+.+...|..+++.....+.+. +... -.++||||+.+.
T Consensus 1 ~i~~~~~~--~~~~~~~~~~~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~vdgiii~~~ 64 (267)
T cd06322 1 VIGASLLT--QQHPFYIELANAMKEEAKKQKVNLIVSIANQDLNKQLSDVEDFITKKVDAIVLSPV 64 (267)
T ss_pred CeeEeecC--cccHHHHHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 46776633 23455666666777788889999987764433321 1111 137999999754
No 195
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=62.02 E-value=44 Score=29.96 Aligned_cols=58 Identities=10% Similarity=0.033 Sum_probs=35.3
Q ss_pred EEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhhc-CCCCEEEECCC
Q 017539 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 13 IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~----l~~~l-~~~DGlll~GG 72 (369)
|+++.... .+.+...+.....+++...|...++.....+.+. +.... .++|||++.+.
T Consensus 2 i~~v~~~~--~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iii~~~ 64 (264)
T cd06267 2 IGVIVPDI--SNPFFAELLRGIEEAAREAGYSVLLCNSDEDPEKEREALELLLSRRVDGIILAPS 64 (264)
T ss_pred EEEEECCC--CCHHHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEecC
Confidence 55554332 2344555556667777788988888776554322 22222 37999999876
No 196
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=61.28 E-value=45 Score=30.48 Aligned_cols=58 Identities=10% Similarity=0.029 Sum_probs=33.9
Q ss_pred EEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhhcC-CCCEEEECCC
Q 017539 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDSFE-PIHGVLLCEG 72 (369)
Q Consensus 13 IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~----l~~~l~-~~DGlll~GG 72 (369)
|||+.... .+.++.-+-....+.+++.|..+++.....+.+. +....+ .+|||++.+.
T Consensus 2 i~vv~p~~--~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 64 (268)
T cd06273 2 IGAIVPTL--DNAIFARVIQAFQETLAAHGYTLLVASSGYDLDREYAQARKLLERGVDGLALIGL 64 (268)
T ss_pred eEEEeCCC--CCchHHHHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 66665321 2344444445566778889999988654433331 122222 5999999754
No 197
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=61.23 E-value=44 Score=30.35 Aligned_cols=58 Identities=10% Similarity=0.021 Sum_probs=34.7
Q ss_pred EEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhhc-CCCCEEEECCC
Q 017539 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 13 IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~----l~~~l-~~~DGlll~GG 72 (369)
|||+... ..+.+...+....-+.+.++|..+++.....+.+. +.... ..+||||+.+.
T Consensus 2 igvv~~~--~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgii~~~~ 64 (259)
T cd01542 2 IGVIVPR--LDSFSTSRTVKGILAALYENGYQMLLMNTNFSIEKEIEALELLARQKVDGIILLAT 64 (259)
T ss_pred eEEEecC--CccchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 5666432 12344445555566778889999988765433332 22211 37999999865
No 198
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=61.07 E-value=49 Score=30.09 Aligned_cols=61 Identities=10% Similarity=0.061 Sum_probs=36.1
Q ss_pred EEEEecCccc--CcCcccccchhHHHHHHHHCCCEEEEEcCCCCh---hhhhhhc--CCCCEEEECCC
Q 017539 12 RVLIVSRRSV--RKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGV---HMLLDSF--EPIHGVLLCEG 72 (369)
Q Consensus 12 ~IgIv~~~~~--~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~---~~l~~~l--~~~DGlll~GG 72 (369)
+|||+..... ..+.+..-+-....+.+.+.|..+.+....... +.+.+.+ ..+||+|+.+.
T Consensus 1 ~igvi~p~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~ 68 (268)
T cd06271 1 AIGLVLPTGEREEGDPFFAEFLSGLSEALAEHGYDLVLLPVDPDEDPLEVYRRLVESGLVDGVIISRT 68 (268)
T ss_pred CeEEEeCCcccccCCccHHHHHHHHHHHHHHCCceEEEecCCCcHHHHHHHHHHHHcCCCCEEEEecC
Confidence 3667653211 234555555555667788899988877654331 2233333 36999999865
No 199
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=60.99 E-value=48 Score=30.41 Aligned_cols=59 Identities=14% Similarity=0.122 Sum_probs=36.6
Q ss_pred EEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCC--CChhh----hhhhc-CCCCEEEECCC
Q 017539 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRV--SGVHM----LLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 12 ~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~--~~~~~----l~~~l-~~~DGlll~GG 72 (369)
+|||+... ..+.+...+.....+++.+.|..+.++... .+.+. +.... ..+||||+.+.
T Consensus 1 ~Igvi~~~--~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgvii~~~ 66 (273)
T cd06310 1 KIALVPKG--TTSDFWQAVKAGAEAAAKELGVKVTFQGPASETDVAGQVNLLENAIARGPDAILLAPT 66 (273)
T ss_pred CeEEEecC--CCcHHHHHHHHHHHHHHHHcCCEEEEecCccCCCHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 46776532 234555666667778889999999887532 23222 11111 27999999865
No 200
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=60.60 E-value=45 Score=30.67 Aligned_cols=59 Identities=5% Similarity=0.039 Sum_probs=33.7
Q ss_pred EEEEecCcccCcCcccccchhHHHHHHHHC---CC--EEEEEcCCCChhh----hhhhc-CCCCEEEECCC
Q 017539 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGY---GA--VPAIVPRVSGVHM----LLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 12 ~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~---Ga--~~vivp~~~~~~~----l~~~l-~~~DGlll~GG 72 (369)
+||++... ..+.+.+.+-...-+.+.+. |. .+++.....+.+. +.... ..+||||+.+.
T Consensus 1 ~Ig~i~~~--~~~~~~~~~~~~i~~~~~~~~~~g~~~~l~i~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~ 69 (272)
T cd06300 1 KIGLSNSY--AGNTWRAQMLDEFKAQAKELKKAGLISEFIVTSADGDVAQQIADIRNLIAQGVDAIIINPA 69 (272)
T ss_pred CeEEeccc--cCChHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 36666532 23456666666666778888 87 3455543333221 11111 37999999865
No 201
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=60.21 E-value=29 Score=37.09 Aligned_cols=83 Identities=20% Similarity=0.189 Sum_probs=48.9
Q ss_pred EEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCCh-h----h-h--hhhcCCCCEEEECCCCCCCCCCcccc
Q 017539 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGV-H----M-L--LDSFEPIHGVLLCEGEDIDPSLYEAE 83 (369)
Q Consensus 12 ~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~-~----~-l--~~~l~~~DGlll~GG~didp~~y~~~ 83 (369)
+|+|+.++... ...-+.....+|+.+.|..+.+-+..... . . . ....+.+|.||.-||-+
T Consensus 292 ~i~iv~~~~~~---~~~~~~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGDG--------- 359 (569)
T PRK14076 292 KFGIVSRIDNE---EAINLALKIIKYLDSKGIPYELESFLYNKLKNRLNEECNLIDDIEEISHIISIGGDG--------- 359 (569)
T ss_pred EEEEEcCCCCH---HHHHHHHHHHHHHHHCCCEEEEechhhhhhcccccccccccccccCCCEEEEECCcH---------
Confidence 48888776421 12223445677888899877765421100 0 0 0 01123589999999921
Q ss_pred CCCCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHH
Q 017539 84 TSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGS 134 (369)
Q Consensus 84 ~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~ 134 (369)
-.+..++.+...++|||||=.|.
T Consensus 360 ----------------------------T~L~aa~~~~~~~~PilGin~G~ 382 (569)
T PRK14076 360 ----------------------------TVLRASKLVNGEEIPIICINMGT 382 (569)
T ss_pred ----------------------------HHHHHHHHhcCCCCCEEEEcCCC
Confidence 12455566556789999998875
No 202
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=60.15 E-value=42 Score=31.15 Aligned_cols=57 Identities=7% Similarity=0.091 Sum_probs=35.2
Q ss_pred EEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhh----hhc-CCCCEEEECCC
Q 017539 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLL----DSF-EPIHGVLLCEG 72 (369)
Q Consensus 13 IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~----~~l-~~~DGlll~GG 72 (369)
||++... ..+.+..-+.....+.++..|..++++... +.+... ... .++||||+.+.
T Consensus 2 Ig~v~~~--~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~-~~~~~~~~i~~~~~~~~dgiii~~~ 63 (289)
T cd01540 2 IGFIVKQ--PEEPWFQTEWKFAKKAAKEKGFTVVKIDVP-DGEKVLSAIDNLGAQGAKGFVICVP 63 (289)
T ss_pred eeeecCC--CCCcHHHHHHHHHHHHHHHcCCEEEEccCC-CHHHHHHHHHHHHHcCCCEEEEccC
Confidence 6666533 235555556666678888899998877544 332211 111 36999999864
No 203
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=59.70 E-value=45 Score=30.35 Aligned_cols=58 Identities=14% Similarity=-0.011 Sum_probs=34.4
Q ss_pred EEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhhc-CCCCEEEECCC
Q 017539 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 13 IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~----l~~~l-~~~DGlll~GG 72 (369)
||++-... .+.+...+.....+.+++.|..+++.+...+.+. +.... ..+||||+.+.
T Consensus 2 Ig~i~~~~--~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 64 (268)
T cd01575 2 VAVLVPSL--SNSVFADVLQGISDVLEAAGYQLLLGNTGYSPEREEELLRTLLSRRPAGLILTGL 64 (268)
T ss_pred EEEEeCCC--cchhHHHHHHHHHHHHHHcCCEEEEecCCCCchhHHHHHHHHHHcCCCEEEEeCC
Confidence 55554321 2334444445667788899999888776443321 12222 37999999865
No 204
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=59.43 E-value=35 Score=32.50 Aligned_cols=59 Identities=8% Similarity=0.023 Sum_probs=40.6
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhc-----CCCCEEEECCC
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSF-----EPIHGVLLCEG 72 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l-----~~~DGlll~GG 72 (369)
.+|||+-... .+.+..-+-...-+.+.+.|..++++....+.+.- +.+ .++||||+.+-
T Consensus 2 ~~IGvivp~~--~npff~~ii~gIe~~a~~~Gy~l~l~~t~~~~~~e-~~i~~l~~~~vDGiI~~s~ 65 (279)
T PF00532_consen 2 KTIGVIVPDI--SNPFFAEIIRGIEQEAREHGYQLLLCNTGDDEEKE-EYIELLLQRRVDGIILASS 65 (279)
T ss_dssp CEEEEEESSS--TSHHHHHHHHHHHHHHHHTTCEEEEEEETTTHHHH-HHHHHHHHTTSSEEEEESS
T ss_pred CEEEEEECCC--CCcHHHHHHHHHHHHHHHcCCEEEEecCCCchHHH-HHHHHHHhcCCCEEEEecc
Confidence 4788886543 35666666667778899999999988766554322 222 37999999943
No 205
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=59.36 E-value=48 Score=30.12 Aligned_cols=58 Identities=10% Similarity=0.045 Sum_probs=34.7
Q ss_pred EEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhh----hhhc-CCCCEEEECCC
Q 017539 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHML----LDSF-EPIHGVLLCEG 72 (369)
Q Consensus 13 IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l----~~~l-~~~DGlll~GG 72 (369)
||++... ..+.+...+.....+.+.+.|..+++.....+.+.. .... .++||||+.+.
T Consensus 2 igvi~~~--~~~~~~~~~~~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiii~~~ 64 (267)
T cd06283 2 IGVIVAD--ITNPFSSLVLKGIEDVCRAHGYQVLVCNSDNDPEKEKEYLESLLAYQVDGLIVNPT 64 (267)
T ss_pred EEEEecC--CccccHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEeCC
Confidence 5555432 224455555566677888899888877654333221 1222 27999999865
No 206
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=58.67 E-value=57 Score=29.62 Aligned_cols=58 Identities=16% Similarity=0.109 Sum_probs=37.1
Q ss_pred EEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhh---hc--CCCCEEEECCC
Q 017539 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLD---SF--EPIHGVLLCEG 72 (369)
Q Consensus 13 IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~---~l--~~~DGlll~GG 72 (369)
|+++.... .+.+...+.....+++++.|..++++....+.+...+ .+ .++|||++.++
T Consensus 2 i~~v~~~~--~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~ 64 (267)
T cd06284 2 ILVLVPDI--ANPFFSEILKGIEDEAREAGYGVLLGDTRSDPEREQEYLDLLRRKQADGIILLDG 64 (267)
T ss_pred EEEEECCC--CCccHHHHHHHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEecC
Confidence 45554331 2566666777788889999999988775544322111 12 26999999765
No 207
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=58.66 E-value=52 Score=29.45 Aligned_cols=58 Identities=10% Similarity=0.103 Sum_probs=35.4
Q ss_pred EEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhh----hhc-CCCCEEEECCC
Q 017539 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLL----DSF-EPIHGVLLCEG 72 (369)
Q Consensus 13 IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~----~~l-~~~DGlll~GG 72 (369)
||++...+ ...+...+.....+++...|...++++...+.+... ... ..+||||+.+.
T Consensus 2 ig~v~~~~--~~~~~~~~~~g~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~ 64 (264)
T cd01537 2 IGVLVPDL--DNPFFAQVLKGIEEAAKAAGYQVLLANSQNDAEKQLSALENLIARGVDGIIIAPS 64 (264)
T ss_pred eEEEEcCC--CChHHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 66665432 233444455556677888999888887654432222 222 27999999865
No 208
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=58.64 E-value=10 Score=36.65 Aligned_cols=21 Identities=48% Similarity=0.732 Sum_probs=14.1
Q ss_pred HHHHHHHHHcCCCEEEEeHHH
Q 017539 114 LRLAKLCLERNIPYLGICRGS 134 (369)
Q Consensus 114 ~~li~~~~e~~iPiLGIClG~ 134 (369)
+..++.+...++||+||=.|.
T Consensus 90 L~~~~~~~~~~~Pilgin~G~ 110 (285)
T PF01513_consen 90 LRAARLFGDYDIPILGINTGT 110 (285)
T ss_dssp HHHHHHCTTST-EEEEEESSS
T ss_pred HHHHHHhccCCCcEEeecCCC
Confidence 455555555689999998774
No 209
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=57.92 E-value=63 Score=31.48 Aligned_cols=61 Identities=3% Similarity=-0.097 Sum_probs=41.3
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhh----hhhc-CCCCEEEECCC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHML----LDSF-EPIHGVLLCEG 72 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l----~~~l-~~~DGlll~GG 72 (369)
.+.||++... ..+.+++-+-....+++.+.|..+++.....+.+.. .... ..+||||+.+.
T Consensus 25 ~~~Ig~i~~~--~~~~f~~~~~~gi~~~a~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vDGiIi~~~ 90 (330)
T PRK10355 25 EVKIGMAIDD--LRLERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPY 90 (330)
T ss_pred CceEEEEecC--CCchHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 5788888743 235666777777888899999999988654443322 2222 28999999864
No 210
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=57.69 E-value=58 Score=29.38 Aligned_cols=59 Identities=12% Similarity=0.152 Sum_probs=36.2
Q ss_pred EEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhhc-CCCCEEEECCC
Q 017539 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 12 ~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~----l~~~l-~~~DGlll~GG 72 (369)
+||++.... .+.+...+.....++++..|...+++....+.+. +.... .++||||+.+.
T Consensus 1 ~ig~i~p~~--~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~ 64 (267)
T cd01536 1 KIGLVVPSL--NNPFWQAMNKGAEAAAKELGVELIVLDAQNDVSKQIQQIEDLIAQGVDGIIISPV 64 (267)
T ss_pred CEEEEeccc--cCHHHHHHHHHHHHHHHhcCceEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 356665322 2345555666666778889999988876544322 22212 27999999865
No 211
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=57.43 E-value=56 Score=31.15 Aligned_cols=50 Identities=4% Similarity=-0.041 Sum_probs=33.4
Q ss_pred cCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhc-----CCCCEEEECCC
Q 017539 23 KNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSF-----EPIHGVLLCEG 72 (369)
Q Consensus 23 ~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l-----~~~DGlll~GG 72 (369)
.+.+.+-+.+...+...+.|..+++.....+.+...+.+ .++|||++.+.
T Consensus 9 ~~~~~~~~~~~i~~~a~~~g~~v~~~~~~~~~~~q~~~i~~l~~~~vDgIIi~~~ 63 (302)
T TIGR02634 9 RLERWQKDRDIFVAAAESLGAKVFVQSANGNEAKQISQIENLIARGVDVLVIIPQ 63 (302)
T ss_pred chhhHHHHHHHHHHHHHhcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 456666667777888999999998876544432211111 36999999854
No 212
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=57.26 E-value=77 Score=30.16 Aligned_cols=61 Identities=7% Similarity=0.009 Sum_probs=36.2
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhh---hhhhc--CCCCEEEECCC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM---LLDSF--EPIHGVLLCEG 72 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~---l~~~l--~~~DGlll~GG 72 (369)
...||++... ..+.+..-+-....+.+.+.|..+++.....+.+. +.+.+ ..+||||+.+.
T Consensus 61 ~~~Igvv~~~--~~~~~~~~l~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 126 (328)
T PRK11303 61 TRSIGLIIPD--LENTSYARIAKYLERQARQRGYQLLIACSDDQPDNEMRCAEHLLQRQVDALIVSTS 126 (328)
T ss_pred CceEEEEeCC--CCCchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 3578887532 22444444555566677889998887654333321 11111 37999999865
No 213
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=56.78 E-value=52 Score=30.31 Aligned_cols=58 Identities=7% Similarity=-0.078 Sum_probs=36.3
Q ss_pred EEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhh----hhc-CCCCEEEECCC
Q 017539 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLL----DSF-EPIHGVLLCEG 72 (369)
Q Consensus 13 IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~----~~l-~~~DGlll~GG 72 (369)
||++.-. ..+.+..-+-....+...+.|..+++.....+.+... ... ..+||||+.+.
T Consensus 2 ~g~~~~~--~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 64 (273)
T cd06309 2 VGFSQVG--AESPWRTAETKSIKDAAEKRGFDLKFADAQQKQENQISAIRSFIAQGVDVIILAPV 64 (273)
T ss_pred eeeccCC--CCCHHHHHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 5555432 2345566666677788888999999876543432221 211 26999999764
No 214
>PLN02929 NADH kinase
Probab=56.56 E-value=33 Score=33.76 Aligned_cols=59 Identities=19% Similarity=0.267 Sum_probs=40.0
Q ss_pred HHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhHH
Q 017539 33 YHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSI 112 (369)
Q Consensus 33 ~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~ 112 (369)
...++|+++|..+..+-... +.+.+..+|-||.-||-+ -
T Consensus 38 ~~~~~L~~~gi~~~~v~r~~----~~~~~~~~Dlvi~lGGDG-------------------------------------T 76 (301)
T PLN02929 38 FCKDILQQKSVDWECVLRNE----LSQPIRDVDLVVAVGGDG-------------------------------------T 76 (301)
T ss_pred HHHHHHHHcCCEEEEeeccc----cccccCCCCEEEEECCcH-------------------------------------H
Confidence 34568889998886554321 133455799999999921 1
Q ss_pred HHHHHHHHHHcCCCEEEEeHH
Q 017539 113 ELRLAKLCLERNIPYLGICRG 133 (369)
Q Consensus 113 e~~li~~~~e~~iPiLGIClG 133 (369)
.+..++.+ ..++||+||=.|
T Consensus 77 ~L~aa~~~-~~~iPvlGIN~G 96 (301)
T PLN02929 77 LLQASHFL-DDSIPVLGVNSD 96 (301)
T ss_pred HHHHHHHc-CCCCcEEEEECC
Confidence 24555666 678999999888
No 215
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=56.40 E-value=57 Score=30.59 Aligned_cols=58 Identities=3% Similarity=-0.088 Sum_probs=37.1
Q ss_pred EEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhh----c-CCCCEEEECCC
Q 017539 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDS----F-EPIHGVLLCEG 72 (369)
Q Consensus 13 IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~----l-~~~DGlll~GG 72 (369)
|||+... ..+.+...+-....+.+.+.|..+.+.....+.+...+. . ..+|||++.+.
T Consensus 2 I~vi~~~--~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~ 64 (288)
T cd01538 2 IGLSLPT--KTEERWIRDRPNFEAALKELGAEVIVQNANGDPAKQISQIENMIAKGVDVLVIAPV 64 (288)
T ss_pred eEEEEeC--CCcHHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 5555432 235566666667778888999999988765443322111 1 37999999864
No 216
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=56.22 E-value=60 Score=30.82 Aligned_cols=59 Identities=7% Similarity=0.066 Sum_probs=34.8
Q ss_pred EEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChh----hhhhhcC---CCCEEEECCC
Q 017539 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVH----MLLDSFE---PIHGVLLCEG 72 (369)
Q Consensus 13 IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~----~l~~~l~---~~DGlll~GG 72 (369)
|||+... ...+.+...+....-+.+.+.|..++++....+.+ .+...+. .+||||+.+.
T Consensus 2 Igvi~~~-~~~~~~~~~~~~gi~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~~vdgiIi~~~ 67 (305)
T cd06324 2 VVFLNPG-KSDEPFWNSVARFMQAAADDLGIELEVLYAERDRFLMLQQARTILQRPDKPDALIFTNE 67 (305)
T ss_pred eEEecCC-CCCCcHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHhccCCCEEEEcCC
Confidence 4555432 11345555555556677888999988876543332 2223333 6999999754
No 217
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=55.71 E-value=68 Score=29.36 Aligned_cols=50 Identities=14% Similarity=0.073 Sum_probs=31.7
Q ss_pred cCcccccchhHHHHHHHHCCCEEEEEcCCCChh---hhhhhc--CCCCEEEECCC
Q 017539 23 KNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVH---MLLDSF--EPIHGVLLCEG 72 (369)
Q Consensus 23 ~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~---~l~~~l--~~~DGlll~GG 72 (369)
.+.+...+-...-+.+...|..+++...+.+.+ .+.+.+ ..+||||+.+.
T Consensus 13 ~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 67 (268)
T cd06277 13 SPAFYSEIYRAIEEEAKKYGYNLILKFVSDEDEEEFELPSFLEDGKVDGIILLGG 67 (268)
T ss_pred cCCcHHHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEeCC
Confidence 355555556666777888999998876543321 112211 37999999764
No 218
>PRK00911 dihydroxy-acid dehydratase; Provisional
Probab=54.67 E-value=32 Score=36.62 Aligned_cols=42 Identities=14% Similarity=0.049 Sum_probs=29.9
Q ss_pred CCcEEEEecCccc--CcCcccccchhHHHHHHHHCCCEEEEEcC
Q 017539 9 ILPRVLIVSRRSV--RKNKFVDFVGEYHLDLIVGYGAVPAIVPR 50 (369)
Q Consensus 9 ~~P~IgIv~~~~~--~~~~~~~~v~~~~l~~l~~~Ga~~vivp~ 50 (369)
.+|.|||+..++. ..|...+-+.+.--+-+.++|+.|...+.
T Consensus 30 ~kP~IgI~ns~se~~Pch~hl~~la~~Vk~gi~~aGg~p~ef~t 73 (552)
T PRK00911 30 DKPFIGIANSWNEITPCNIHLNELADAVKEGVRAAGGVPFEFNT 73 (552)
T ss_pred cCCEEEEeccccccccchhhHHHHHHHHHHHHHHcCCEeEEeCC
Confidence 4899999987763 33444445555555678889999998764
No 219
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=54.33 E-value=84 Score=30.11 Aligned_cols=60 Identities=10% Similarity=0.132 Sum_probs=36.9
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhh---hc--CCCCEEEECCC
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLD---SF--EPIHGVLLCEG 72 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~---~l--~~~DGlll~GG 72 (369)
..||++... ..+.+...+-....+++.+.|..++++....+.+...+ .+ ..+||||+.+.
T Consensus 65 ~~Igvv~~~--~~~~~~~~i~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 129 (342)
T PRK10014 65 GVIGLIVRD--LSAPFYAELTAGLTEALEAQGRMVFLLQGGKDGEQLAQRFSTLLNQGVDGVVIAGA 129 (342)
T ss_pred CEEEEEeCC--CccchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 478887643 22445555556667788889988877655433322111 11 36999999875
No 220
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=54.31 E-value=75 Score=31.22 Aligned_cols=60 Identities=10% Similarity=0.013 Sum_probs=39.3
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhh----hc-CCCCEEEECC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLD----SF-EPIHGVLLCE 71 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~----~l-~~~DGlll~G 71 (369)
.-.||++... ..+.+..-+-...-+.+.+.|..+++.....+.+.... .. ..+||||+.|
T Consensus 58 s~~Ig~i~p~--~~~~~~~~i~~gi~~~~~~~gy~~~l~~~~~~~~~e~~~~~~l~~~~vdGiIi~~ 122 (333)
T COG1609 58 TKTIGLVVPD--ITNPFFAEILKGIEEAAREAGYSLLLANTDDDPEKEREYLETLLQKRVDGLILLG 122 (333)
T ss_pred CCEEEEEeCC--CCCchHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 3477877652 22355555555667778889999999887664432221 11 2799999998
No 221
>PLN02699 Bifunctional molybdopterin adenylyltransferase/molybdopterin molybdenumtransferase
Probab=54.18 E-value=46 Score=36.26 Aligned_cols=66 Identities=14% Similarity=0.084 Sum_probs=41.3
Q ss_pred CcEEEEecCcc-cC--------cCcccccchhHHHHHHHHCCCEEEEEcCC-CChhhhhh----hcC-CCCEEEECCCCC
Q 017539 10 LPRVLIVSRRS-VR--------KNKFVDFVGEYHLDLIVGYGAVPAIVPRV-SGVHMLLD----SFE-PIHGVLLCEGED 74 (369)
Q Consensus 10 ~P~IgIv~~~~-~~--------~~~~~~~v~~~~l~~l~~~Ga~~vivp~~-~~~~~l~~----~l~-~~DGlll~GG~d 74 (369)
+|+|+|++.-+ .. .++..+.-......++++.|+.++.+... .+.+.+.+ .++ .+|-||.+||..
T Consensus 181 kprV~visTGdELv~~g~~~~~~g~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DlvItTGGts 260 (659)
T PLN02699 181 RPTVAILSTGDELVEPTTGTLGRGQIRDSNRAMLLAAAIQQQCKVVDLGIARDDEEELERILDEAISSGVDILLTSGGVS 260 (659)
T ss_pred CCeEEEEeCCcccccCCCCCCCCCcEEeChHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhcCCCCEEEECCCCC
Confidence 79999996533 11 23344444444566788999998855433 34444433 333 589999999965
Q ss_pred C
Q 017539 75 I 75 (369)
Q Consensus 75 i 75 (369)
+
T Consensus 261 ~ 261 (659)
T PLN02699 261 M 261 (659)
T ss_pred C
Confidence 4
No 222
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=53.89 E-value=20 Score=32.80 Aligned_cols=87 Identities=16% Similarity=0.142 Sum_probs=45.0
Q ss_pred EEEEecCc-ccCcCcccccchhHHHHHHH-HCCCEEEEEcCCCChhhh-hhhcCCCCEEEECCCCCCCCCCccccCCCCC
Q 017539 12 RVLIVSRR-SVRKNKFVDFVGEYHLDLIV-GYGAVPAIVPRVSGVHML-LDSFEPIHGVLLCEGEDIDPSLYEAETSNLS 88 (369)
Q Consensus 12 ~IgIv~~~-~~~~~~~~~~v~~~~l~~l~-~~Ga~~vivp~~~~~~~l-~~~l~~~DGlll~GG~didp~~y~~~~~~~~ 88 (369)
+|+|++.. .-..+...........+.++ ..|..+.+... .+.+ .+.|+.+|.||+..... +. ++
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~~~~v~~~~~---~~~~~~~~L~~~Dvvv~~~~~~-~~---------l~ 67 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESEGFEVTVTED---PDDLTPENLKGYDVVVFYNTGG-DE---------LT 67 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTTCEEEEECCS---GGCTSHHCHCT-SEEEEE-SSC-CG---------S-
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCCCEEEEEEeC---cccCChhHhcCCCEEEEECCCC-Cc---------CC
Confidence 57787765 22222222234444555666 35555554432 2222 23577999999986531 00 11
Q ss_pred hhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHH
Q 017539 89 PEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRG 133 (369)
Q Consensus 89 ~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG 133 (369)
++ ..+.++..+++|.+++|+..+
T Consensus 68 ~~----------------------~~~al~~~v~~Ggglv~lH~~ 90 (217)
T PF06283_consen 68 DE----------------------QRAALRDYVENGGGLVGLHGA 90 (217)
T ss_dssp HH----------------------HHHHHHHHHHTT-EEEEEGGG
T ss_pred HH----------------------HHHHHHHHHHcCCCEEEEccc
Confidence 11 235667778899999999944
No 223
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=53.86 E-value=73 Score=29.21 Aligned_cols=58 Identities=9% Similarity=0.129 Sum_probs=34.9
Q ss_pred EEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChh----hhhhhc-CCCCEEEECCC
Q 017539 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVH----MLLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 13 IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~----~l~~~l-~~~DGlll~GG 72 (369)
|||+... ..+.+...+-....+.+.+.|..++++....+.+ .+...+ ..+||||+.+.
T Consensus 2 i~vi~~~--~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~ 64 (277)
T cd06319 2 IAYIVSD--LRIPFWQIMGRGVKSKAKALGYDAVELSAENSAKKELENLRTAIDKGVSGIIISPT 64 (277)
T ss_pred eEEEeCC--CCchHHHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 5665422 2345555566666777888999888876543322 122212 47999998754
No 224
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=53.86 E-value=66 Score=30.44 Aligned_cols=58 Identities=9% Similarity=0.121 Sum_probs=34.7
Q ss_pred EEEecCcccCcCcccccchhHHHHHHHHCCCEEEEE-cCCCChhhhhh----hc-CCCCEEEECCC
Q 017539 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIV-PRVSGVHMLLD----SF-EPIHGVLLCEG 72 (369)
Q Consensus 13 IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~viv-p~~~~~~~l~~----~l-~~~DGlll~GG 72 (369)
|+++... ..+.+...+-....+.+.+.|..++++ +...+.+...+ .+ ..+||||+.+.
T Consensus 2 I~vi~~~--~~~~f~~~i~~gi~~~a~~~g~~v~~~~~~~~d~~~~~~~i~~~~~~~~DgiIi~~~ 65 (298)
T cd06302 2 IAFVPKV--TGIPYFNRMEEGAKEAAKELGVDAIYVGPTTADAAGQVQIIEDLIAQGVDAIAVVPN 65 (298)
T ss_pred EEEEEcC--CCChHHHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 5655432 124555556666677788899998875 54433322222 22 36999999854
No 225
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=53.84 E-value=37 Score=29.33 Aligned_cols=20 Identities=20% Similarity=0.308 Sum_probs=14.0
Q ss_pred cCCCEEEEeHHHHHHHHHhCCe
Q 017539 123 RNIPYLGICRGSQVLNVACGGT 144 (369)
Q Consensus 123 ~~iPiLGIClG~QlL~~a~GG~ 144 (369)
.+.|+.|+| +|-|..-.|-.
T Consensus 115 ~~kkliGvC--fm~mF~ragW~ 134 (154)
T COG4090 115 GNKKLIGVC--FMNMFERAGWD 134 (154)
T ss_pred CCCceEEee--HHHHHHHcCcc
Confidence 467999999 66666654543
No 226
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=53.80 E-value=71 Score=29.33 Aligned_cols=58 Identities=7% Similarity=0.046 Sum_probs=35.4
Q ss_pred EEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhhc-CCCCEEEECCC
Q 017539 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 13 IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~----l~~~l-~~~DGlll~GG 72 (369)
|||+... ..+.+...+-....+.+++.|..+++.....+.+. +...+ ..+||+|+.++
T Consensus 2 igvv~~~--~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~ 64 (273)
T cd01541 2 IGVITTY--ISDYIFPSIIRGIESVLSEKGYSLLLASTNNDPERERKCLENMLSQGIDGLIIEPT 64 (273)
T ss_pred eEEEeCC--ccchhHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecc
Confidence 6666532 22445555556667788889999987764433321 11112 37999999765
No 227
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=53.55 E-value=66 Score=30.55 Aligned_cols=59 Identities=5% Similarity=-0.016 Sum_probs=34.4
Q ss_pred EEEEecCcccCcCcccccchhHHHHHHHH--CCCEEEEEcCCCChh----hhhhhc-CCCCEEEECCC
Q 017539 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVG--YGAVPAIVPRVSGVH----MLLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 12 ~IgIv~~~~~~~~~~~~~v~~~~l~~l~~--~Ga~~vivp~~~~~~----~l~~~l-~~~DGlll~GG 72 (369)
+|||+... ..+.+.+-+.....+.+.+ .|..+++.+...+.+ .+...+ ..+||||+.+.
T Consensus 1 ~Igviv~~--~~~~~~~~~~~gi~~~a~~~~~g~~~~~~~~~~~~~~q~~~i~~l~~~~vdgiii~~~ 66 (303)
T cd01539 1 KIGVFLYK--FDDTFISLVRKNLEDIQKENGGKVEFTFYDAKNNQSTQNEQIDTALAKGVDLLAVNLV 66 (303)
T ss_pred CeEEEeeC--CCChHHHHHHHHHHHHHHhhCCCeeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 35665432 2244555555566677777 787777776554432 222222 38999999754
No 228
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=53.41 E-value=63 Score=29.41 Aligned_cols=58 Identities=12% Similarity=0.131 Sum_probs=34.9
Q ss_pred EEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhhc-CCCCEEEECCC
Q 017539 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 13 IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~----l~~~l-~~~DGlll~GG 72 (369)
||++... ..+.+...+.....+++++.|..++++....+.+. +...+ .++||||+.+.
T Consensus 2 i~vi~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 64 (268)
T cd06298 2 VGVIIPD--ITNSYFAELARGIDDIATMYKYNIILSNSDNDKEKELKVLNNLLAKQVDGIIFMGG 64 (268)
T ss_pred EEEEECC--CcchHHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 5555432 12445555556666778889999888765433322 22212 37999999864
No 229
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=53.23 E-value=33 Score=32.82 Aligned_cols=63 Identities=10% Similarity=-0.107 Sum_probs=38.8
Q ss_pred CCCCCCCCCCcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCC----C---hhhhhhhcCCCCEEEECCC
Q 017539 1 MAAHDLSVILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS----G---VHMLLDSFEPIHGVLLCEG 72 (369)
Q Consensus 1 ~~~~~~~~~~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~----~---~~~l~~~l~~~DGlll~GG 72 (369)
|+.++.+-.-.+|+| +|+.. -.+...+.|++.|+.++.+|... + .+.....+..+|.||++..
T Consensus 9 ~~~~~~~l~g~~Ilv-TRp~~--------q~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~~l~~l~~~d~iiftS~ 78 (266)
T PRK08811 9 MTGAATADAAWTLIS-LRPSG--------EHAPLRRAVARHGGRLLALSPWRLQRLDTAQARDALRQALAAPIVVFTSP 78 (266)
T ss_pred CCCCCcCCCCCEEEE-eCCHH--------HHHHHHHHHHHCCCcEEEcCceeecCCCchhHHHHHhhcccCCEEEEECH
Confidence 444444444456766 55532 12456788999999999888621 1 1122234568999999865
No 230
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=52.97 E-value=41 Score=35.67 Aligned_cols=42 Identities=10% Similarity=-0.029 Sum_probs=29.6
Q ss_pred CCcEEEEecCccc--CcCcccccchhHHHHHHHHCCCEEEEEcC
Q 017539 9 ILPRVLIVSRRSV--RKNKFVDFVGEYHLDLIVGYGAVPAIVPR 50 (369)
Q Consensus 9 ~~P~IgIv~~~~~--~~~~~~~~v~~~~l~~l~~~Ga~~vivp~ 50 (369)
.+|.|||++.++. ..|...+-+.+.--+.++++|+.|...+.
T Consensus 10 ~kP~IgI~ns~~e~~pch~hl~~l~~~vk~gv~~aGg~p~ef~t 53 (535)
T TIGR00110 10 GKPFIGVANSYTTIVPGHMHLRDLAQAVKEGIEAAGGVAFEFNT 53 (535)
T ss_pred CCCEEEEEeccccCcCchhhHHHHHHHHHHHHHHcCCeeEEecC
Confidence 3899999988763 33433444555555678889999998764
No 231
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=52.26 E-value=80 Score=29.03 Aligned_cols=58 Identities=16% Similarity=0.037 Sum_probs=34.6
Q ss_pred EEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCC--Chhh----hhhhc-CCCCEEEECCC
Q 017539 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS--GVHM----LLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 13 IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~--~~~~----l~~~l-~~~DGlll~GG 72 (369)
|||+... ..+.+...+....-+.+++.|..+++...+. +.+. +.... .++||||+.+.
T Consensus 2 igvi~~~--~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 66 (275)
T cd06320 2 YGVVLKT--LSNEFWRSLKEGYENEAKKLGVSVDIQAAPSEGDQQGQLSIAENMINKGYKGLLFSPI 66 (275)
T ss_pred eeEEEec--CCCHHHHHHHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHhCCCEEEECCC
Confidence 6666532 2245555666667778888999888765322 2211 21222 37999999754
No 232
>PF02514 CobN-Mg_chel: CobN/Magnesium Chelatase; InterPro: IPR003672 This family contains a domain common to the cobN protein and to magnesium protoporphyrin chelatase. CobN may play a role in cobalt insertion reactions and is implicated in the conversion of precorrin-2 to cobyrinic acid in cobalamin biosynthesis []. Magnesium protoporphyrin chelatase is involved in chlorophyll biosynthesis as the third subunit of light-independent protochlorophyllide reductase in bacteria and plants [].; GO: 0009058 biosynthetic process
Probab=52.19 E-value=44 Score=38.61 Aligned_cols=64 Identities=17% Similarity=0.047 Sum_probs=43.2
Q ss_pred CCCcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCC---ChhhhhhhcCC-----CCEEEECCC
Q 017539 8 VILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS---GVHMLLDSFEP-----IHGVLLCEG 72 (369)
Q Consensus 8 ~~~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~---~~~~l~~~l~~-----~DGlll~GG 72 (369)
..+|+|||+..++.....-..+ -+..++.|++.|+.|+++-... ..+.+...|.. +|+||-+-+
T Consensus 69 ~~~P~VgIlfyrs~~~~g~~~~-vdaLI~~LE~~G~nvipvf~~~~~~~~~~i~~~f~~~g~~~vDaIIn~~~ 140 (1098)
T PF02514_consen 69 PNRPTVGILFYRSYWLSGNTAV-VDALIRALEERGLNVIPVFCSSGPDSQEAIEDYFMDDGKPRVDAIINLTG 140 (1098)
T ss_pred CCCCEEEEEeehhhhhcCCcHH-HHHHHHHHHHCCCeEEEEEecCccchHHHHHHHHhhcCCCCceEEEEcCc
Confidence 3589999998765322222223 3457899999999999887432 34456666655 999887755
No 233
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=52.07 E-value=73 Score=29.09 Aligned_cols=58 Identities=9% Similarity=0.042 Sum_probs=35.0
Q ss_pred EEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhh-----cCCCCEEEECCC
Q 017539 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDS-----FEPIHGVLLCEG 72 (369)
Q Consensus 13 IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~-----l~~~DGlll~GG 72 (369)
|||+... ..+.+..-+.....+.+.+.|..+++.....+.+...+. -..+|||++.+.
T Consensus 2 igvi~p~--~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~ 64 (265)
T cd06285 2 IGVLVPR--LTDTVMATMYEGIEEAAAERGYSTFVANTGDNPDAQRRAIEMLLDRRVDGLILGDA 64 (265)
T ss_pred EEEEeCC--CCCccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 5665432 134555555666777888999998776654443221111 137999999753
No 234
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=51.83 E-value=1.1e+02 Score=28.37 Aligned_cols=59 Identities=17% Similarity=0.037 Sum_probs=36.0
Q ss_pred EEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhc-----CCCCEEEECCC
Q 017539 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSF-----EPIHGVLLCEG 72 (369)
Q Consensus 12 ~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l-----~~~DGlll~GG 72 (369)
.||++... ..+.+..-+.....+.+.++|..+++.....+.+...+.+ .++||||+.+.
T Consensus 2 ~ig~i~~~--~~~~~~~~~~~gi~~~a~~~gy~~~~~~~~~~~~~~~~~i~~l~~~~vdgiil~~~ 65 (280)
T cd06315 2 NIIFVASD--LKNGGILGVGEGVREAAKAIGWNLRILDGRGSEAGQAAALNQAIALKPDGIVLGGV 65 (280)
T ss_pred eEEEEecc--cCCcHHHHHHHHHHHHHHHcCcEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 46666432 2345555556666788889999888775443332211111 37999999864
No 235
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=51.75 E-value=49 Score=30.19 Aligned_cols=83 Identities=12% Similarity=0.114 Sum_probs=52.0
Q ss_pred EEEecCcccCcCcccccchhHHHHHHHHCCCEEEEE-cCCCChhhhhhhc-----CCCCEEEECCCCCCCCCCccccCCC
Q 017539 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIV-PRVSGVHMLLDSF-----EPIHGVLLCEGEDIDPSLYEAETSN 86 (369)
Q Consensus 13 IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~viv-p~~~~~~~l~~~l-----~~~DGlll~GG~didp~~y~~~~~~ 86 (369)
|+|+..... +.+.+.+....-++....|....++ +...+.+...+.+ ..+||||+.... +..
T Consensus 1 I~vi~~~~~--~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~---~~~------- 68 (257)
T PF13407_consen 1 IGVIVPSMD--NPFWQQVIKGAKAAAKELGYEVEIVFDAQNDPEEQIEQIEQAISQGVDGIIVSPVD---PDS------- 68 (257)
T ss_dssp EEEEESSSS--SHHHHHHHHHHHHHHHHHTCEEEEEEESTTTHHHHHHHHHHHHHTTESEEEEESSS---TTT-------
T ss_pred cEEEeCCCC--CHHHHHHHHHHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHHhcCCEEEecCCC---HHH-------
Confidence 455543322 3466666667777888899999986 6555543222222 379999998652 210
Q ss_pred CChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHH
Q 017539 87 LSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRG 133 (369)
Q Consensus 87 ~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG 133 (369)
....++.+.+.++|+..+=.+
T Consensus 69 --------------------------~~~~l~~~~~~gIpvv~~d~~ 89 (257)
T PF13407_consen 69 --------------------------LAPFLEKAKAAGIPVVTVDSD 89 (257)
T ss_dssp --------------------------THHHHHHHHHTTSEEEEESST
T ss_pred --------------------------HHHHHHHHhhcCceEEEEecc
Confidence 025677888889999985444
No 236
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=51.48 E-value=41 Score=32.48 Aligned_cols=82 Identities=22% Similarity=0.248 Sum_probs=46.5
Q ss_pred EEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCCh-----hhhhhhcCCCCEEEECCCCCCCCCCccccCCC
Q 017539 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGV-----HMLLDSFEPIHGVLLCEGEDIDPSLYEAETSN 86 (369)
Q Consensus 12 ~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~-----~~l~~~l~~~DGlll~GG~didp~~y~~~~~~ 86 (369)
.|||+.++.... .......+..++...+-.....+..... ......-+.+|.++.-||.
T Consensus 2 ~~~i~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~d~ivvlGGD------------- 65 (281)
T COG0061 2 KVGIVGRPDKPE---ALKIAKRLYEFLKFKGVTVEVDQELAEELKDFADYVDDDEEKADLIVVLGGD------------- 65 (281)
T ss_pred eEEEEecCCcHH---HHHHHHHHHHHHHhcCceEEEechhhhhcccccccccccccCceEEEEeCCc-------------
Confidence 578888775321 2233445666777777666554321100 0001111357777777772
Q ss_pred CChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHH
Q 017539 87 LSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRG 133 (369)
Q Consensus 87 ~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG 133 (369)
...+..++.+...++||+||=+|
T Consensus 66 ------------------------GtlL~~~~~~~~~~~pilgin~G 88 (281)
T COG0061 66 ------------------------GTLLRAARLLARLDIPVLGINLG 88 (281)
T ss_pred ------------------------HHHHHHHHHhccCCCCEEEEeCC
Confidence 12346666666678999999999
No 237
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=50.64 E-value=44 Score=33.05 Aligned_cols=82 Identities=22% Similarity=0.364 Sum_probs=50.5
Q ss_pred HHHHHHHCCCEEEEEcCCCC-hhhhhhhcCCCCEEEECC--CCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhh
Q 017539 34 HLDLIVGYGAVPAIVPRVSG-VHMLLDSFEPIHGVLLCE--GEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKD 110 (369)
Q Consensus 34 ~l~~l~~~Ga~~vivp~~~~-~~~l~~~l~~~DGlll~G--G~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd 110 (369)
-++||++---.|+++.-... ++.....=..++|||+|+ |-.+|- .+ .-++
T Consensus 214 Di~wLr~~T~LPIvvKGilt~eDA~~Ave~G~~GIIVSNHGgRQlD~-----vp-----AtI~----------------- 266 (363)
T KOG0538|consen 214 DIKWLRSITKLPIVVKGVLTGEDARKAVEAGVAGIIVSNHGGRQLDY-----VP-----ATIE----------------- 266 (363)
T ss_pred hhHHHHhcCcCCeEEEeecccHHHHHHHHhCCceEEEeCCCccccCc-----cc-----chHH-----------------
Confidence 46788888888888864433 333333323899999995 433321 00 0011
Q ss_pred HHHHHHHHHHHHcCCCEE---EEeHHHHHH-HHHhCCe
Q 017539 111 SIELRLAKLCLERNIPYL---GICRGSQVL-NVACGGT 144 (369)
Q Consensus 111 ~~e~~li~~~~e~~iPiL---GIClG~QlL-~~a~GG~ 144 (369)
.+.-+-.+++.++||| |+=+|--++ +.|+|++
T Consensus 267 --~L~Evv~aV~~ri~V~lDGGVR~G~DVlKALALGAk 302 (363)
T KOG0538|consen 267 --ALPEVVKAVEGRIPVFLDGGVRRGTDVLKALALGAK 302 (363)
T ss_pred --HHHHHHHHhcCceEEEEecCcccchHHHHHHhcccc
Confidence 1223344566789999 999998887 5678887
No 238
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=50.10 E-value=77 Score=29.10 Aligned_cols=59 Identities=3% Similarity=-0.018 Sum_probs=31.5
Q ss_pred EEEEecCcccCcCcccccchhHHHHHHHHC-CCEEEEEcCCCChhh----hhhhc-CCCCEEEECCC
Q 017539 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGY-GAVPAIVPRVSGVHM----LLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 12 ~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~-Ga~~vivp~~~~~~~----l~~~l-~~~DGlll~GG 72 (369)
+||++... ..+.+..-+.....+.+... |..+++.....+.+. +.... ..+|||++.+.
T Consensus 1 ~ig~~~~~--~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~ 65 (270)
T cd06308 1 VIGFSQCN--LADPWRAAMNDEIQREASNYPDVELIIADAADDNSKQVADIENFIRQGVDLLIISPN 65 (270)
T ss_pred CEEEEeeC--CCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhCCCEEEEecC
Confidence 35666532 12344444444555666765 777777654333321 22111 27999999865
No 239
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=50.07 E-value=46 Score=33.11 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=24.0
Q ss_pred HHHHHHHHHcCCCEEEEeHHHHHHHHH
Q 017539 114 LRLAKLCLERNIPYLGICRGSQVLNVA 140 (369)
Q Consensus 114 ~~li~~~~e~~iPiLGIClG~QlL~~a 140 (369)
...++.+..++.++-|||-|.=+|+.+
T Consensus 98 ~~~Lr~~~~~G~~l~gictGaf~LA~a 124 (328)
T COG4977 98 LAWLRRAARRGARLGGLCTGAFVLAEA 124 (328)
T ss_pred HHHHHHHHhcCCeEEEehHhHHHHHHh
Confidence 467788888999999999999999986
No 240
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=50.02 E-value=89 Score=28.29 Aligned_cols=58 Identities=17% Similarity=0.195 Sum_probs=35.4
Q ss_pred EEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChh---hhhhhc-CCCCEEEECCC
Q 017539 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVH---MLLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 13 IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~---~l~~~l-~~~DGlll~GG 72 (369)
||++... ..+.+...+-....+.+.+.|..++++....+.+ .+.... ..+|||++.+.
T Consensus 2 I~~i~~~--~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~ 63 (266)
T cd06278 2 IGVVVAD--LDNPFYSELLEALSRALQARGYQPLLINTDDDEDLDAALRQLLQYRVDGVIVTSG 63 (266)
T ss_pred EEEEeCC--CCCchHHHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHHcCCCEEEEecC
Confidence 5666532 2345555555566778889999998887554321 111111 37999999765
No 241
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=49.98 E-value=87 Score=29.32 Aligned_cols=58 Identities=7% Similarity=-0.086 Sum_probs=33.3
Q ss_pred EEEecCcccCcCcccccchhHHHHHHHHCCCEEEEE-cCCCChh----hhhhhc-CCCCEEEECCC
Q 017539 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIV-PRVSGVH----MLLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 13 IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~viv-p~~~~~~----~l~~~l-~~~DGlll~GG 72 (369)
||++... ..+.+...+.....+.+.+.|..++.+ ....+.+ .+...+ ..+||||+.+.
T Consensus 2 i~~i~~~--~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~dgiii~~~ 65 (294)
T cd06316 2 AAIVMHT--SGSDWSNAQVRGAKDEFAKLGIEVVATTDAQFDPAKQVADIETTISQKPDIIISIPV 65 (294)
T ss_pred eEEEecC--CCChHHHHHHHHHHHHHHHcCCEEEEecCCCCCHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 5555422 123455556666677888999988865 3322332 122211 37999999753
No 242
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=49.92 E-value=70 Score=31.60 Aligned_cols=66 Identities=11% Similarity=0.055 Sum_probs=39.8
Q ss_pred EEEEecCc-ccCcCcccccchhHHHHHHHHCCCEEEEEcCC-CChhhhhh----h-cCCCCEEEECCCCCCCC
Q 017539 12 RVLIVSRR-SVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRV-SGVHMLLD----S-FEPIHGVLLCEGEDIDP 77 (369)
Q Consensus 12 ~IgIv~~~-~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~-~~~~~l~~----~-l~~~DGlll~GG~didp 77 (369)
+++|+.-. ....+...+.-......++++.|+.++..... ++.+.+.+ . .+.+|-||.+||.++++
T Consensus 157 ~~aIltvsde~~~G~i~Dsn~~~L~~~L~~~G~~v~~~~iVpDD~~~I~~al~~a~~~~~DlIITTGGtg~g~ 229 (312)
T PRK03604 157 SAAVLVLSDSIAAGTKEDRSGKLIVEGLEEAGFEVSHYTIIPDEPAEIAAAVAAWIAEGYALIITTGGTGLGP 229 (312)
T ss_pred EEEEEEECCcCCCCcEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHhhhCCCCEEEECCCCCCCC
Confidence 54455322 23445555666666777899999988855433 23333333 2 24689999999976544
No 243
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=49.31 E-value=54 Score=31.53 Aligned_cols=45 Identities=9% Similarity=-0.042 Sum_probs=29.7
Q ss_pred EEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCC
Q 017539 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEG 72 (369)
Q Consensus 12 ~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG 72 (369)
+|+|+.+... ....+.....+|+++.|..++.- .+.+|-++.-||
T Consensus 4 ~i~iv~~~~~----~a~~~~~~l~~~l~~~g~~~~~~------------~~~~D~vi~lGG 48 (264)
T PRK03501 4 NLFFFYKRDK----ELVEKVKPLKKIAEEYGFTVVDH------------PKNANIIVSIGG 48 (264)
T ss_pred EEEEEECCCH----HHHHHHHHHHHHHHHCCCEEEcC------------CCCccEEEEECC
Confidence 6888876533 12234445677899999877632 125799999999
No 244
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=49.18 E-value=59 Score=26.60 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=16.6
Q ss_pred HHHHHHHHHcCCCEEEEeH
Q 017539 114 LRLAKLCLERNIPYLGICR 132 (369)
Q Consensus 114 ~~li~~~~e~~iPiLGICl 132 (369)
..+++.+.+++.|+++|+-
T Consensus 64 ~~~~~~a~~~g~~vi~iT~ 82 (128)
T cd05014 64 LNLLPHLKRRGAPIIAITG 82 (128)
T ss_pred HHHHHHHHHCCCeEEEEeC
Confidence 4788889999999999994
No 245
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=48.77 E-value=80 Score=28.96 Aligned_cols=58 Identities=10% Similarity=-0.008 Sum_probs=33.5
Q ss_pred EEEecCcccCcCcccccchhHHHHHHHH--CCCEEEEEcCCCChhhhhhh-----cCCCCEEEECCC
Q 017539 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVG--YGAVPAIVPRVSGVHMLLDS-----FEPIHGVLLCEG 72 (369)
Q Consensus 13 IgIv~~~~~~~~~~~~~v~~~~l~~l~~--~Ga~~vivp~~~~~~~l~~~-----l~~~DGlll~GG 72 (369)
|||+-.. ..+.+..-+.....+++.+ .|..+++.+...+.+...+. -..+||||+.+.
T Consensus 2 Ig~v~~~--~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiIi~~~ 66 (271)
T cd06321 2 IGVSVGD--LGNPFFVALAKGAEAAAKKLNPGVKVTVVSADYDLNKQVSQIDNFIAAKVDLILLNAV 66 (271)
T ss_pred eEEEecc--cCCHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 5555432 1345555566666778888 77777666544343222121 137999999764
No 246
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=48.54 E-value=1.4e+02 Score=23.73 Aligned_cols=41 Identities=10% Similarity=0.008 Sum_probs=29.3
Q ss_pred hHHHHHHHHCCCEEEEE--cCCCChh--hhhhhcCCCCEEEECCC
Q 017539 32 EYHLDLIVGYGAVPAIV--PRVSGVH--MLLDSFEPIHGVLLCEG 72 (369)
Q Consensus 32 ~~~l~~l~~~Ga~~viv--p~~~~~~--~l~~~l~~~DGlll~GG 72 (369)
..|-+.++++|+..+.. ....... .++..+...|.||+.=+
T Consensus 13 ~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~ 57 (97)
T PF10087_consen 13 RRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTD 57 (97)
T ss_pred HHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeC
Confidence 34778899999999988 2222222 37777778899999855
No 247
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=48.53 E-value=89 Score=28.83 Aligned_cols=58 Identities=16% Similarity=0.048 Sum_probs=36.5
Q ss_pred EEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCCh---hhhhhhc--CCCCEEEECCC
Q 017539 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGV---HMLLDSF--EPIHGVLLCEG 72 (369)
Q Consensus 13 IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~---~~l~~~l--~~~DGlll~GG 72 (369)
||++.... .+.+..-+-....+++.+.|..+++.....+. +.+...+ ..+||||+.+.
T Consensus 2 Igvi~p~~--~~~~~~~~~~~i~~~~~~~gy~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~ 64 (269)
T cd06297 2 ISVLLPVV--ATEFYRRLLEGIEGALLEQRYDLALFPLLSLARLKRYLESTTLAYLTDGLLLASY 64 (269)
T ss_pred EEEEeCCC--cChhHHHHHHHHHHHHHHCCCEEEEEeCCCcHHHHHHHHHHHHhcCCCEEEEecC
Confidence 66665332 24555666667778888999999988754321 1122212 26999999865
No 248
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=48.19 E-value=49 Score=29.51 Aligned_cols=62 Identities=23% Similarity=0.277 Sum_probs=42.7
Q ss_pred hHHHHHHHHCCCEEEEEcCCCChhh---hhhhc--CCCCEEEECCCC-CCCCCCccccCCCCChhHHHHHHhhcCCCCcc
Q 017539 32 EYHLDLIVGYGAVPAIVPRVSGVHM---LLDSF--EPIHGVLLCEGE-DIDPSLYEAETSNLSPEELEEIRRLHTSDTAI 105 (369)
Q Consensus 32 ~~~l~~l~~~Ga~~vivp~~~~~~~---l~~~l--~~~DGlll~GG~-didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~ 105 (369)
..+.+++...|.+|+...-..+..- ..+.+ ..+|+++|..|- |+
T Consensus 69 ~~l~~~l~~~Gf~pv~~kG~~Dv~laIDame~~~~~~iD~~vLvSgD~DF------------------------------ 118 (160)
T TIGR00288 69 DKLIEAVVNQGFEPIIVAGDVDVRMAVEAMELIYNPNIDAVALVTRDADF------------------------------ 118 (160)
T ss_pred HHHHHHHHHCCceEEEecCcccHHHHHHHHHHhccCCCCEEEEEeccHhH------------------------------
Confidence 3456788899999987665444322 22333 578999998772 21
Q ss_pred CchhhHHHHHHHHHHHHcCCCEEEEe
Q 017539 106 DKEKDSIELRLAKLCLERNIPYLGIC 131 (369)
Q Consensus 106 ~~~rd~~e~~li~~~~e~~iPiLGIC 131 (369)
..|+.++++.|+-|.|+-
T Consensus 119 --------~~Lv~~lre~G~~V~v~g 136 (160)
T TIGR00288 119 --------LPVINKAKENGKETIVIG 136 (160)
T ss_pred --------HHHHHHHHHCCCEEEEEe
Confidence 367888888999999875
No 249
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=48.19 E-value=37 Score=34.11 Aligned_cols=85 Identities=21% Similarity=0.275 Sum_probs=50.8
Q ss_pred HHHHHHHHCCCEEEEEcCCCChhhhhhhcC-CCCEEEECC--CCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchh
Q 017539 33 YHLDLIVGYGAVPAIVPRVSGVHMLLDSFE-PIHGVLLCE--GEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEK 109 (369)
Q Consensus 33 ~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~-~~DGlll~G--G~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~r 109 (369)
..++++++.=-.|++|.-..+.++.....+ .+|||+++| |-++|- + + . .
T Consensus 215 ~~i~~~~~~~~~pvivKgv~~~~da~~~~~~G~~~i~vs~hGGr~~d~---~--~---------------------~-~- 266 (356)
T PF01070_consen 215 DDIEWIRKQWKLPVIVKGVLSPEDAKRAVDAGVDGIDVSNHGGRQLDW---G--P---------------------P-T- 266 (356)
T ss_dssp HHHHHHHHHCSSEEEEEEE-SHHHHHHHHHTT-SEEEEESGTGTSSTT---S------------------------B-H-
T ss_pred HHHHHHhcccCCceEEEecccHHHHHHHHhcCCCEEEecCCCcccCcc---c--c---------------------c-c-
Confidence 358888887777888875555555544333 799999995 433221 1 0 0 0
Q ss_pred hHHHHHHHHHHHHcCCCEE---EEeHHHHHH-HHHhCCeee
Q 017539 110 DSIELRLAKLCLERNIPYL---GICRGSQVL-NVACGGTLY 146 (369)
Q Consensus 110 d~~e~~li~~~~e~~iPiL---GIClG~QlL-~~a~GG~l~ 146 (369)
...+.-++.+...++||+ ||..|.-++ +.++|++..
T Consensus 267 -~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kalaLGA~~v 306 (356)
T PF01070_consen 267 -IDALPEIRAAVGDDIPIIADGGIRRGLDVAKALALGADAV 306 (356)
T ss_dssp -HHHHHHHHHHHTTSSEEEEESS--SHHHHHHHHHTT-SEE
T ss_pred -ccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHHcCCCeE
Confidence 112344555556679999 899999777 568898854
No 250
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=48.01 E-value=98 Score=28.31 Aligned_cols=58 Identities=9% Similarity=-0.039 Sum_probs=35.1
Q ss_pred EEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhhc-CCCCEEEECCC
Q 017539 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 13 IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~----l~~~l-~~~DGlll~GG 72 (369)
|||+-.. ..+.+..-+.....+.+++.|..++++....+.+. +...+ ..+||||+.+.
T Consensus 2 igvi~p~--~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgii~~~~ 64 (268)
T cd06270 2 IGLVVSD--LDGPFFGPLLSGVESVARKAGKHLIITAGHHSAEKEREAIEFLLERRCDALILHSK 64 (268)
T ss_pred EEEEEcc--ccCcchHHHHHHHHHHHHHCCCEEEEEeCCCchHHHHHHHHHHHHcCCCEEEEecC
Confidence 5565432 22455555556667778889999987764433221 11111 37999999864
No 251
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=47.80 E-value=80 Score=28.65 Aligned_cols=57 Identities=7% Similarity=0.069 Sum_probs=33.0
Q ss_pred EEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhc-----CCCCEEEECC
Q 017539 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSF-----EPIHGVLLCE 71 (369)
Q Consensus 13 IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l-----~~~DGlll~G 71 (369)
||++... ..+.+..-+.....+.+.+.|..+++.....+.+...+.+ .++||||+.+
T Consensus 2 I~vv~~~--~~~~~~~~~~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~dgii~~~ 63 (268)
T cd06323 2 IGLSVST--LNNPFFVTLKDGAQKEAKELGYELTVLDAQNDAAKQLNDIEDLITRGVDAIIINP 63 (268)
T ss_pred eeEeccc--ccCHHHHHHHHHHHHHHHHcCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 5555432 1244555555556677888998888776544433222111 2699999964
No 252
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=47.46 E-value=1.3e+02 Score=28.83 Aligned_cols=59 Identities=15% Similarity=0.027 Sum_probs=35.9
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhhc-CCCCEEEECC
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDSF-EPIHGVLLCE 71 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~----l~~~l-~~~DGlll~G 71 (369)
..||++... ..+.+...+-....+.+.+.|..+++.+...+.+. +.... ..+||||+.+
T Consensus 64 ~~Igvi~~~--~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiI~~~ 127 (331)
T PRK14987 64 RAIGVLLPS--LTNQVFAEVLRGIESVTDAHGYQTMLAHYGYKPEMEQERLESMLSWNIDGLILTE 127 (331)
T ss_pred CEEEEEeCC--CcchhHHHHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcC
Confidence 477877532 22445555556666778889998887765433321 11111 3799999975
No 253
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=46.94 E-value=1.4e+02 Score=27.98 Aligned_cols=61 Identities=10% Similarity=-0.021 Sum_probs=37.3
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhh----c-CCCCEEEECCC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDS----F-EPIHGVLLCEG 72 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~----l-~~~DGlll~GG 72 (369)
...||++... ..+.+..-+.....+.+++.|..+++.....+.+..... . ..+||+++.+.
T Consensus 26 ~~~I~vi~~~--~~~~f~~~~~~~i~~~~~~~G~~~~~~~~~~d~~~~~~~~~~l~~~~~dgiii~~~ 91 (295)
T PRK10653 26 KDTIALVVST--LNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPT 91 (295)
T ss_pred CCeEEEEecC--CCChHHHHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 3478877532 234555556666677888999999876543333222211 1 36999999754
No 254
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=46.93 E-value=91 Score=28.92 Aligned_cols=49 Identities=2% Similarity=-0.276 Sum_probs=31.0
Q ss_pred CcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhh----hc-CCCCEEEECCC
Q 017539 24 NKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLD----SF-EPIHGVLLCEG 72 (369)
Q Consensus 24 ~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~----~l-~~~DGlll~GG 72 (369)
+.+...+.....+.+.+.|..+++.....+.+...+ .. ..+||||+.+.
T Consensus 11 ~~f~~~~~~gi~~~~~~~G~~~~~~~~~~d~~~~~~~i~~~~~~~vdgiii~~~ 64 (272)
T cd06313 11 ATWCAQGKQAADEAGKLLGVDVTWYGGALDAVKQVAAIENMASQGWDFIAVDPL 64 (272)
T ss_pred ChHHHHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 445555556666778889999988765434332222 22 36999999753
No 255
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=46.91 E-value=1.1e+02 Score=27.82 Aligned_cols=58 Identities=16% Similarity=0.209 Sum_probs=32.7
Q ss_pred EEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhhc-CCCCEEEECCC
Q 017539 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 13 IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~----l~~~l-~~~DGlll~GG 72 (369)
||++.... .+.+...+-...-+..++.|..+++.....+.+. +.... ..+|||++.+.
T Consensus 2 I~vi~~~~--~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~ 64 (268)
T cd06289 2 IGLVINDL--TNPFFAELAAGLEEVLEEAGYTVFLANSGEDVERQEQLLSTMLEHGVAGIILCPA 64 (268)
T ss_pred EEEEecCC--CcchHHHHHHHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEeCC
Confidence 56665321 2344444444555678888988877654333321 22222 36999999865
No 256
>PLN02979 glycolate oxidase
Probab=46.70 E-value=1e+02 Score=31.27 Aligned_cols=87 Identities=15% Similarity=0.184 Sum_probs=53.7
Q ss_pred HHHHHHHHCCCEEEEEcCCCChhhhhhhcC-CCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhH
Q 017539 33 YHLDLIVGYGAVPAIVPRVSGVHMLLDSFE-PIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDS 111 (369)
Q Consensus 33 ~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~-~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~ 111 (369)
..++||++.--.|++|.-..+.++.....+ .+|||+++|.+.-.. +..+. . .
T Consensus 213 ~dl~wlr~~~~~PvivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrql---d~~p~----------------------t--~ 265 (366)
T PLN02979 213 KDVQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQL---DYVPA----------------------T--I 265 (366)
T ss_pred HHHHHHHhccCCCEEeecCCCHHHHHHHHhcCCCEEEECCCCcCCC---CCchh----------------------H--H
Confidence 468899988778888876655554444333 899999997432111 00000 0 0
Q ss_pred HHHHHHHHHHHcCCCEE---EEeHHHHHH-HHHhCCeee
Q 017539 112 IELRLAKLCLERNIPYL---GICRGSQVL-NVACGGTLY 146 (369)
Q Consensus 112 ~e~~li~~~~e~~iPiL---GIClG~QlL-~~a~GG~l~ 146 (369)
..+..++.+...++||+ ||..|..++ +.++|++..
T Consensus 266 ~~L~ei~~~~~~~~~Vi~dGGIr~G~Di~KALALGAdaV 304 (366)
T PLN02979 266 SALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGI 304 (366)
T ss_pred HHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEE
Confidence 01222334444568998 999999988 567888754
No 257
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=46.39 E-value=1e+02 Score=28.13 Aligned_cols=59 Identities=7% Similarity=0.041 Sum_probs=34.4
Q ss_pred EEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhc-----CCCCEEEECCC
Q 017539 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSF-----EPIHGVLLCEG 72 (369)
Q Consensus 13 IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l-----~~~DGlll~GG 72 (369)
||++..... .+.+...+.....+++.+.|..+++.....+.+...+.+ ..+||||+.+.
T Consensus 2 i~vi~p~~~-~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 65 (275)
T cd06317 2 IGYTQNNVG-SHSYQTTYNKAFQAAAEEDGVEVIVLDANGDVARQAAQVEDLIAQKVDGIILWPT 65 (275)
T ss_pred eEEEecccC-CCHHHHHHHHHHHHHHHhcCCEEEEEcCCcCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 555543210 244555555666677888999988876543432221111 37999999765
No 258
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=46.19 E-value=1.3e+02 Score=27.80 Aligned_cols=59 Identities=12% Similarity=0.036 Sum_probs=35.5
Q ss_pred EEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCC--Chh----hhhhhc-CCCCEEEECCC
Q 017539 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS--GVH----MLLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 12 ~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~--~~~----~l~~~l-~~~DGlll~GG 72 (369)
+|||+... ..+.++.-+.....+.++..|..+++..... +.+ .+.... ..+||||+.+.
T Consensus 1 ~Igvi~~~--~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiI~~~~ 66 (268)
T cd06306 1 KLCVLYPH--LKDAYWLSVNYGMVEEAKRLGVSLKLLEAGGYPNLAKQIAQLEDCAAWGADAILLGAV 66 (268)
T ss_pred CeEEEcCC--CCCHHHHHHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 36666532 2345555555566678889999998875432 221 222222 37999999864
No 259
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=46.02 E-value=1.2e+02 Score=28.82 Aligned_cols=58 Identities=10% Similarity=-0.003 Sum_probs=35.4
Q ss_pred EEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEEC
Q 017539 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLC 70 (369)
Q Consensus 12 ~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~ 70 (369)
+|+|++...+......-.-+....+++++.|..++++.++...-.... ...+|.|+..
T Consensus 6 ~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~~~~~~~~-~~~~D~v~~~ 63 (304)
T PRK01372 6 KVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGEDIAAQLK-ELGFDRVFNA 63 (304)
T ss_pred EEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCcchHHHhc-cCCCCEEEEe
Confidence 678887543322222112345678899999999999976543222221 1368998875
No 260
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=45.83 E-value=1.5e+02 Score=28.17 Aligned_cols=60 Identities=7% Similarity=-0.042 Sum_probs=36.3
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhhc-CCCCEEEECCC
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~----l~~~l-~~~DGlll~GG 72 (369)
..||++... ..+.+...+.....+.+.+.|..+++.....+.+. +.... ..+||||+.+.
T Consensus 61 ~~Igvi~~~--~~~~~~~~~~~~i~~~~~~~gy~~~i~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 125 (327)
T TIGR02417 61 RTIGLVIPD--LENYSYARIAKELEQQCREAGYQLLIACSDDNPDQEKVVIENLLARQVDALIVASC 125 (327)
T ss_pred ceEEEEeCC--CCCccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 578887532 12344444555566677889999988765433321 11111 37999999765
No 261
>PRK12448 dihydroxy-acid dehydratase; Provisional
Probab=45.73 E-value=61 Score=34.95 Aligned_cols=42 Identities=14% Similarity=0.086 Sum_probs=28.7
Q ss_pred CCcEEEEecCccc--CcCcccccchhHHHHHHHHCCCEEEEEcC
Q 017539 9 ILPRVLIVSRRSV--RKNKFVDFVGEYHLDLIVGYGAVPAIVPR 50 (369)
Q Consensus 9 ~~P~IgIv~~~~~--~~~~~~~~v~~~~l~~l~~~Ga~~vivp~ 50 (369)
.+|.|||+..++. ..+....-+.+.--+.+..+|+.|...+.
T Consensus 32 ~kP~IgI~ns~~e~~pch~hl~~la~~vk~gi~~aGG~p~ef~t 75 (615)
T PRK12448 32 GKPIIAVVNSFTQFVPGHVHLKDLGQLVAREIEAAGGVAKEFNT 75 (615)
T ss_pred CCCEEEEEeccccCcCchhhHHHHHHHHHHHHHHcCCeeeEecc
Confidence 3899999987753 23333444445555668889999987764
No 262
>PLN02699 Bifunctional molybdopterin adenylyltransferase/molybdopterin molybdenumtransferase
Probab=45.61 E-value=1.4e+02 Score=32.55 Aligned_cols=72 Identities=17% Similarity=0.128 Sum_probs=36.5
Q ss_pred CCCCCcEEEEecCcc-cCcCcccccchhHHHHH----HHHC-CCEEEEEcCC-CChhhhh----hh--cCCCCEEEECCC
Q 017539 6 LSVILPRVLIVSRRS-VRKNKFVDFVGEYHLDL----IVGY-GAVPAIVPRV-SGVHMLL----DS--FEPIHGVLLCEG 72 (369)
Q Consensus 6 ~~~~~P~IgIv~~~~-~~~~~~~~~v~~~~l~~----l~~~-Ga~~vivp~~-~~~~~l~----~~--l~~~DGlll~GG 72 (369)
.-+.+|+|+|++-.+ .......|-.+....++ .... |+.++.+... .+.+.+. +. .+.+|-||.+||
T Consensus 454 ~~~~~~rvaIIt~sde~~~~~~~D~sg~~~~~il~~n~~~l~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVItTGG 533 (659)
T PLN02699 454 AQNPEVKVAILTVSDTVSSGAGPDRSGPRAVSVVNSSSEKLGGAKVVATAVVPDDVEKIKDVLQKWSDIDRMDLILTLGG 533 (659)
T ss_pred cccCCcEEEEEEECCcccCCCcccccchHHHHHHHhhhhhcCCcEEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 344578999985432 22222232222221222 3333 8877644322 2333333 32 246899999999
Q ss_pred CCCCC
Q 017539 73 EDIDP 77 (369)
Q Consensus 73 ~didp 77 (369)
..+++
T Consensus 534 ts~g~ 538 (659)
T PLN02699 534 TGFTP 538 (659)
T ss_pred ccCCC
Confidence 76554
No 263
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=45.57 E-value=1e+02 Score=28.40 Aligned_cols=57 Identities=16% Similarity=0.132 Sum_probs=33.5
Q ss_pred EEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEc-CCCChhh----hhhhc-CCCCEEEECCC
Q 017539 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVP-RVSGVHM----LLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 13 IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp-~~~~~~~----l~~~l-~~~DGlll~GG 72 (369)
||++... .+.+..-+....-+.+.+.|..+.++. ...+.+. +.... ..+||||+.+.
T Consensus 2 i~~v~~~---~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~ 64 (271)
T cd06314 2 IAVVTNG---ASPFWKIAEAGVKAAGKELGVDVEFVVPQQGTVNAQLRMLEDLIAEGVDGIAISPI 64 (271)
T ss_pred eEEEcCC---CcHHHHHHHHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 6666532 244555555556677888999888763 3223221 11111 27999999864
No 264
>cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar bindi
Probab=45.36 E-value=1.1e+02 Score=28.26 Aligned_cols=57 Identities=16% Similarity=0.102 Sum_probs=37.3
Q ss_pred EEEEecCcc---cCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECC
Q 017539 12 RVLIVSRRS---VRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCE 71 (369)
Q Consensus 12 ~IgIv~~~~---~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~G 71 (369)
+||++.-++ ...+.+...+.....+.++..|..+++....... ......+||||+.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~---~~~~~~vdgii~~~ 60 (270)
T cd01544 1 RIAIVQWYSEEEELDDPYYLSIRLGIEKRAQELGIELTKFFRDDDL---LEILEDVDGIIAIG 60 (270)
T ss_pred CeEEEEeccccccccCccHHHHHHHHHHHHHHcCCEEEEEeccchh---HHhccCcCEEEEec
Confidence 467775533 2335566666666677888899999887653222 22346899999975
No 265
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=45.18 E-value=1e+02 Score=28.06 Aligned_cols=58 Identities=10% Similarity=-0.038 Sum_probs=34.8
Q ss_pred EEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChh----hhhhhc-CCCCEEEECCC
Q 017539 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVH----MLLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 13 IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~----~l~~~l-~~~DGlll~GG 72 (369)
|||+... ..+.+...+.....+.+.+.|..+++.....+.+ .+.... ..+||||+.+.
T Consensus 2 i~vi~~~--~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~ 64 (270)
T cd06296 2 IGLVFPD--LDSPWASEVLRGVEEAAAAAGYDVVLSESGRRTSPERQWVERLSARRTDGVILVTP 64 (270)
T ss_pred eEEEECC--CCCccHHHHHHHHHHHHHHcCCeEEEecCCCchHHHHHHHHHHHHcCCCEEEEecC
Confidence 5665432 1245555555666778888999988876554332 122222 26999999754
No 266
>PRK13016 dihydroxy-acid dehydratase; Provisional
Probab=44.87 E-value=48 Score=35.46 Aligned_cols=66 Identities=21% Similarity=0.178 Sum_probs=41.8
Q ss_pred CCcEEEEecCccc--CcCcccccchhHHHHHHHHCCCEEEEEcCCCC------------hhhhhhh------cCCCCEEE
Q 017539 9 ILPRVLIVSRRSV--RKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSG------------VHMLLDS------FEPIHGVL 68 (369)
Q Consensus 9 ~~P~IgIv~~~~~--~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~------------~~~l~~~------l~~~DGll 68 (369)
.+|.|||++.++. ..|...+-+.+.--+.+.++|+.|+..+.... .+-+.+. -..+||+|
T Consensus 41 ~KP~IgI~ns~se~~Pch~hL~~la~~Vk~gv~~aGG~P~ef~ti~v~Dgi~~g~sl~~RelIAdsiE~~~~a~~~Dg~V 120 (577)
T PRK13016 41 GKPVIAILNTWSDANPCHGHFRERVEDVKRGVLQAGGFPLELPALSLSENFVKPTTMLYRNLLAMETEELIRSHPVDGAV 120 (577)
T ss_pred cCCEEEEEecccCCcCchhhHHHHHHHHHHHHHHcCCeeEecccccCcccccCCcccccHHHHHHHHHHHHhcCCccceE
Confidence 4899999987763 33444445555556678889999987764211 1111111 13689999
Q ss_pred ECCCCC
Q 017539 69 LCEGED 74 (369)
Q Consensus 69 l~GG~d 74 (369)
+-+|-|
T Consensus 121 ~l~~CD 126 (577)
T PRK13016 121 LMGGCD 126 (577)
T ss_pred EeccCC
Confidence 998853
No 267
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=44.59 E-value=1.1e+02 Score=28.15 Aligned_cols=59 Identities=12% Similarity=0.045 Sum_probs=35.3
Q ss_pred EEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCC-Chhhhhhh-----cCCCCEEEECCC
Q 017539 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS-GVHMLLDS-----FEPIHGVLLCEG 72 (369)
Q Consensus 13 IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~-~~~~l~~~-----l~~~DGlll~GG 72 (369)
|+++.... ..+.+..-+....-+.+.+.|..+++..... +.+...+. -..+||||+.+.
T Consensus 2 i~~i~~~~-~~~~~~~~~~~g~~~~~~~~g~~v~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 66 (271)
T cd06312 2 IAFVTHGP-AGDPFWTVVKNGAEDAAKDLGVDVEYRGPETFDVADMARLIEAAIAAKPDGIVVTIP 66 (271)
T ss_pred EEEecCCC-CCCcHHHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 55555321 0245555555666778888999988876544 43322111 137999999864
No 268
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=44.42 E-value=76 Score=32.57 Aligned_cols=63 Identities=13% Similarity=0.121 Sum_probs=38.4
Q ss_pred EEEEecCc-ccCcCcccccchhHHHHHHHHCCCEEEEEcCC-CCh----hhhhhhcCCCCEEEECCCCC
Q 017539 12 RVLIVSRR-SVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRV-SGV----HMLLDSFEPIHGVLLCEGED 74 (369)
Q Consensus 12 ~IgIv~~~-~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~-~~~----~~l~~~l~~~DGlll~GG~d 74 (369)
+|+|++-- ....+...+.-.....+++...|..+...... ++. +.+...++.+|-||++||-+
T Consensus 2 ~v~Ii~tGdEll~G~i~dtN~~~l~~~L~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlVIttGGlg 70 (413)
T TIGR00200 2 KAEIISVGDELLLGQIVNTNAQWLADFLAHQGLPLSRRTTVGDNPERLKTIIRIASERADVLIFNGGLG 70 (413)
T ss_pred EEEEEEECccccCCcEEEchHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 45666433 33445555554445566788999887644322 233 33444556899999999853
No 269
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=42.77 E-value=63 Score=30.33 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=31.0
Q ss_pred HHHHHHHCCCEE-EEEcCCCChhhhhhhcCCCCEEEECCC
Q 017539 34 HLDLIVGYGAVP-AIVPRVSGVHMLLDSFEPIHGVLLCEG 72 (369)
Q Consensus 34 ~l~~l~~~Ga~~-vivp~~~~~~~l~~~l~~~DGlll~GG 72 (369)
-++.+++.|+++ +.+...+..+.+...++.+|.|++..-
T Consensus 101 ~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsV 140 (220)
T COG0036 101 TIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSV 140 (220)
T ss_pred HHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEEeE
Confidence 567888999988 445556678888999999999999743
No 270
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=42.28 E-value=1.6e+02 Score=28.12 Aligned_cols=60 Identities=10% Similarity=0.031 Sum_probs=36.9
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhhc-CCCCEEEECCC
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~----l~~~l-~~~DGlll~GG 72 (369)
..||++.... .+.+...+-....+.+.+.|..+++.....+.+. +.... ..+||||+.++
T Consensus 60 ~~i~vi~~~~--~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 124 (341)
T PRK10703 60 KSIGLLATSS--EAPYFAEIIEAVEKNCYQKGYTLILCNAWNNLEKQRAYLSMLAQKRVDGLLVMCS 124 (341)
T ss_pred CeEEEEeCCC--CCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 4788775432 2445555555667778889999887764433332 11111 26999999865
No 271
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=41.54 E-value=63 Score=31.08 Aligned_cols=68 Identities=15% Similarity=0.178 Sum_probs=42.6
Q ss_pred EEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhH
Q 017539 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEE 91 (369)
Q Consensus 12 ~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~ 91 (369)
.|+|+.+... ...-+.....+++.+.|... . . +.+|-+|.-||-+
T Consensus 2 ~i~Ii~~~~~----~~~~~~~~l~~~l~~~g~~~---~----~-------~~~Dlvi~iGGDG----------------- 46 (265)
T PRK04885 2 KVAIISNGDP----KSKRVASKLKKYLKDFGFIL---D----E-------KNPDIVISVGGDG----------------- 46 (265)
T ss_pred EEEEEeCCCH----HHHHHHHHHHHHHHHcCCcc---C----C-------cCCCEEEEECCcH-----------------
Confidence 3888866321 12234455677788888761 1 0 2589999999921
Q ss_pred HHHHHhhcCCCCccCchhhHHHHHHHHHHHH--cCCCEEEEeHHH
Q 017539 92 LEEIRRLHTSDTAIDKEKDSIELRLAKLCLE--RNIPYLGICRGS 134 (369)
Q Consensus 92 ~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e--~~iPiLGIClG~ 134 (369)
-.+..++.+.. .++|++||=.|.
T Consensus 47 --------------------T~L~a~~~~~~~~~~iPilGIN~G~ 71 (265)
T PRK04885 47 --------------------TLLSAFHRYENQLDKVRFVGVHTGH 71 (265)
T ss_pred --------------------HHHHHHHHhcccCCCCeEEEEeCCC
Confidence 12455555555 589999998874
No 272
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=41.27 E-value=1e+02 Score=29.28 Aligned_cols=38 Identities=8% Similarity=0.021 Sum_probs=24.2
Q ss_pred cchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCC
Q 017539 29 FVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEG 72 (369)
Q Consensus 29 ~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG 72 (369)
-..+...+++.+.|..+..-.... .....+|.+|.-||
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~~~------~~~~~~d~vi~iGG 50 (256)
T PRK14075 13 KEAKFLKEKISKEHEVVEFCEASA------SGKVTADLIIVVGG 50 (256)
T ss_pred HHHHHHHHHHHHcCCeeEeecccc------cccCCCCEEEEECC
Confidence 444556778888887666443211 12236899999999
No 273
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=41.20 E-value=27 Score=29.77 Aligned_cols=52 Identities=13% Similarity=0.126 Sum_probs=32.9
Q ss_pred CcccccchhHHHHHHHHCCCEEEEEcCC-CChhhhhh----hcCCCCEEEECCCCCC
Q 017539 24 NKFVDFVGEYHLDLIVGYGAVPAIVPRV-SGVHMLLD----SFEPIHGVLLCEGEDI 75 (369)
Q Consensus 24 ~~~~~~v~~~~l~~l~~~Ga~~vivp~~-~~~~~l~~----~l~~~DGlll~GG~di 75 (369)
+...|.-.....++++++|+.++..... .+.+.+.+ .++..|-||.+||-+.
T Consensus 12 g~~~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~D~VittGG~g~ 68 (144)
T PF00994_consen 12 GQIRDSNGPFLAALLEELGIEVIRYGIVPDDPDAIKEALRRALDRADLVITTGGTGP 68 (144)
T ss_dssp TSSEBHHHHHHHHHHHHTTEEEEEEEEEESSHHHHHHHHHHHHHTTSEEEEESSSSS
T ss_pred CceEEhHHHHHHHHHHHcCCeeeEEEEECCCHHHHHHHHHhhhccCCEEEEcCCcCc
Confidence 4444555555667888999988633221 34444444 3457899999999654
No 274
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=41.19 E-value=1.3e+02 Score=29.62 Aligned_cols=60 Identities=10% Similarity=0.094 Sum_probs=36.0
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEE-EcCCCChh----hhhhhc-CCCCEEEECCC
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAI-VPRVSGVH----MLLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vi-vp~~~~~~----~l~~~l-~~~DGlll~GG 72 (369)
..|+++... ..+.|...+....-++.++.|..+++ .|...+.+ .+.... ..+|||++++.
T Consensus 24 ~~i~~v~k~--~~~pf~~~~~~Gi~~aa~~~G~~v~~~~~~~~d~~~q~~~i~~li~~~vdgIiv~~~ 89 (336)
T PRK15408 24 ERIAFIPKL--VGVGFFTSGGNGAKEAGKELGVDVTYDGPTEPSVSGQVQLINNFVNQGYNAIIVSAV 89 (336)
T ss_pred cEEEEEECC--CCCHHHHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 356666532 22456666666677888899988876 34332321 222222 37999999743
No 275
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=41.15 E-value=1e+02 Score=30.01 Aligned_cols=58 Identities=9% Similarity=0.172 Sum_probs=31.6
Q ss_pred CCcEEEEecCcccCcCcccccchhHHHHHHHHCC--CEEEEEcCCC-C---hhhhhhhc---------CCCCEEEEC-CC
Q 017539 9 ILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYG--AVPAIVPRVS-G---VHMLLDSF---------EPIHGVLLC-EG 72 (369)
Q Consensus 9 ~~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~G--a~~vivp~~~-~---~~~l~~~l---------~~~DGlll~-GG 72 (369)
...+||||+..+. ..-..+++.+.+++ +.+++.|... + +..+...+ ..+|.|||. ||
T Consensus 13 ~p~~I~vITs~~g-------Aa~~D~~~~~~~r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGG 85 (319)
T PF02601_consen 13 FPKRIAVITSPTG-------AAIQDFLRTLKRRNPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGG 85 (319)
T ss_pred CCCEEEEEeCCch-------HHHHHHHHHHHHhCCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCC
Confidence 3458999988753 22334455555544 5556666432 1 22222111 148999998 65
Q ss_pred C
Q 017539 73 E 73 (369)
Q Consensus 73 ~ 73 (369)
+
T Consensus 86 G 86 (319)
T PF02601_consen 86 G 86 (319)
T ss_pred C
Confidence 4
No 276
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=41.07 E-value=94 Score=28.24 Aligned_cols=57 Identities=14% Similarity=0.085 Sum_probs=34.3
Q ss_pred EEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCC-----------------------ChhhhhhhcCCCCEEE
Q 017539 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS-----------------------GVHMLLDSFEPIHGVL 68 (369)
Q Consensus 12 ~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~-----------------------~~~~l~~~l~~~DGll 68 (369)
+++|...+.. +.-...+.+.-++.+++.|+++.++.... +.+++.+.+...||||
T Consensus 3 i~~I~gs~r~--~G~t~~l~~~~~~g~~~~G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~~aD~iI 80 (207)
T COG0655 3 ILGINGSPRS--NGNTAKLAEAVLEGAEEAGAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLLEADGII 80 (207)
T ss_pred eeEEEecCCC--CCcHHHHHHHHHHHHHHcCCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHHHCCEEE
Confidence 4445443322 23345566667888998999887665321 1234444466789999
Q ss_pred EC
Q 017539 69 LC 70 (369)
Q Consensus 69 l~ 70 (369)
|.
T Consensus 81 ~g 82 (207)
T COG0655 81 FG 82 (207)
T ss_pred Ee
Confidence 96
No 277
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=41.04 E-value=1.2e+02 Score=31.53 Aligned_cols=58 Identities=7% Similarity=0.119 Sum_probs=33.8
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHC--CCEEEEEcCCC-C---hhhhh------hhcCCCCEEEEC-CCCC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGY--GAVPAIVPRVS-G---VHMLL------DSFEPIHGVLLC-EGED 74 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~--Ga~~vivp~~~-~---~~~l~------~~l~~~DGlll~-GG~d 74 (369)
.-+||||+.++. .+-...+..+.+. .+.+++.|... + ..++. +....+|-||+. ||++
T Consensus 135 p~~IGVITS~tg-------AairDIl~~~~rR~P~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGS 205 (440)
T COG1570 135 PKKIGVITSPTG-------AALRDILHTLSRRFPSVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGS 205 (440)
T ss_pred CCeEEEEcCCch-------HHHHHHHHHHHhhCCCCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcch
Confidence 347999998853 3344455555553 46677777531 1 22222 223469999998 6654
No 278
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=40.30 E-value=1.7e+02 Score=26.50 Aligned_cols=49 Identities=12% Similarity=0.004 Sum_probs=29.8
Q ss_pred CcccccchhHHHHHHHHCCCEEEEEcCCCCh---hhhhhhc--CCCCEEEECCC
Q 017539 24 NKFVDFVGEYHLDLIVGYGAVPAIVPRVSGV---HMLLDSF--EPIHGVLLCEG 72 (369)
Q Consensus 24 ~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~---~~l~~~l--~~~DGlll~GG 72 (369)
+.+...+....-+++.+.|..+++....... +.+...+ ..+||||+.++
T Consensus 16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dgiii~~~ 69 (270)
T cd06294 16 NPFFIEVLRGISAVANENGYDISLATGKNEEELLEEVKKMIQQKRVDGFILLYS 69 (270)
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEEecCCCcHHHHHHHHHHHHHcCcCEEEEecC
Confidence 4555555555567788899888776543222 2333333 25999999854
No 279
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=40.26 E-value=81 Score=30.19 Aligned_cols=18 Identities=22% Similarity=0.429 Sum_probs=16.1
Q ss_pred HHHHHHHHHcCCCEEEEe
Q 017539 114 LRLAKLCLERNIPYLGIC 131 (369)
Q Consensus 114 ~~li~~~~e~~iPiLGIC 131 (369)
..+|+.|...+||+.|+|
T Consensus 131 ~qAI~EA~~lnIPvIal~ 148 (249)
T PTZ00254 131 HQAIREASYVNIPVIALC 148 (249)
T ss_pred hHHHHHHHHhCCCEEEEe
Confidence 368899999999999999
No 280
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=39.30 E-value=1.5e+02 Score=27.16 Aligned_cols=58 Identities=3% Similarity=-0.148 Sum_probs=31.2
Q ss_pred EEEecCcccCcCcccccchhHHHHHHHHC-----CCEEEEEcCCCChh---h-hhhhc-CCCCEEEECCC
Q 017539 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGY-----GAVPAIVPRVSGVH---M-LLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 13 IgIv~~~~~~~~~~~~~v~~~~l~~l~~~-----Ga~~vivp~~~~~~---~-l~~~l-~~~DGlll~GG 72 (369)
||++... ..+.+...+.+..-+...+. |..+++.....+.+ . +.... ..+|||++.+.
T Consensus 2 Ig~i~~~--~~~~f~~~~~~gi~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vDgiii~~~ 69 (274)
T cd06311 2 IGVSIPA--ADHGWTAGIVWHAQAAAKKLEAAYPDVEFILVTASNDTEQQNAQQDLLINRKIDALVILPF 69 (274)
T ss_pred eeeeccC--CCCcHHHHHHHHHHHHHHHhhhhCCCeEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 5565432 22455555555555566665 56666665433322 1 22233 26999999864
No 281
>PRK03670 competence damage-inducible protein A; Provisional
Probab=39.29 E-value=1.2e+02 Score=28.98 Aligned_cols=52 Identities=12% Similarity=0.091 Sum_probs=30.9
Q ss_pred cCcccccchhHHHHHHHHCCCEEEEEcCCC-Chhhhhh----hcC-CCCEEEECCCCC
Q 017539 23 KNKFVDFVGEYHLDLIVGYGAVPAIVPRVS-GVHMLLD----SFE-PIHGVLLCEGED 74 (369)
Q Consensus 23 ~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~-~~~~l~~----~l~-~~DGlll~GG~d 74 (369)
.+...+.-.....+++...|..+..+.... +.+.+.+ .+. .+|-||++||-+
T Consensus 14 ~G~i~dtN~~~la~~L~~~G~~v~~~~iV~Dd~~~I~~~l~~a~~~~~DlVIttGGlG 71 (252)
T PRK03670 14 TGNTVDSNSAFIAQKLTEKGYWVRRITTVGDDVEEIKSVVLEILSRKPEVLVISGGLG 71 (252)
T ss_pred CCeEEehhHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhhCCCCEEEECCCcc
Confidence 344444444445567889999876544332 3333333 334 479999999854
No 282
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=39.16 E-value=1e+02 Score=27.90 Aligned_cols=40 Identities=10% Similarity=0.050 Sum_probs=30.7
Q ss_pred HHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCC
Q 017539 33 YHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGE 73 (369)
Q Consensus 33 ~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~ 73 (369)
.-.+.+...|+.++...++ +.+.+...|.++|.|++.-+.
T Consensus 35 ~~~~~l~~~g~~vv~~d~~-~~~~l~~al~g~d~v~~~~~~ 74 (233)
T PF05368_consen 35 DRAQQLQALGAEVVEADYD-DPESLVAALKGVDAVFSVTPP 74 (233)
T ss_dssp HHHHHHHHTTTEEEES-TT--HHHHHHHHTTCSEEEEESSC
T ss_pred hhhhhhhcccceEeecccC-CHHHHHHHHcCCceEEeecCc
Confidence 4566788899988866554 678889999999999998774
No 283
>PRK06131 dihydroxy-acid dehydratase; Validated
Probab=38.79 E-value=99 Score=33.14 Aligned_cols=65 Identities=25% Similarity=0.206 Sum_probs=42.1
Q ss_pred CcEEEEecCccc--CcCcccccchhHHHHHHHHCCCEEEEEcCCCC------------hhhhhhh------cCCCCEEEE
Q 017539 10 LPRVLIVSRRSV--RKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSG------------VHMLLDS------FEPIHGVLL 69 (369)
Q Consensus 10 ~P~IgIv~~~~~--~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~------------~~~l~~~------l~~~DGlll 69 (369)
+|.|||++.++. ..|...+-+.+.--+.+.++|+.|..+|.... .+-+.+. -..+||+|+
T Consensus 38 kP~IgI~ns~se~~Pch~hl~~l~~~vk~gi~~aGg~p~ef~ti~v~Dgi~~g~sL~sRelIAdsiE~~~~a~~~Dg~v~ 117 (571)
T PRK06131 38 RPIIGICNTWSDLNPCNAHFRQLAERVKRGVLEAGGFPVEFPVISLGESFLRPTAMLYRNLAAMDVEEMIRGYPIDGVVL 117 (571)
T ss_pred CCEEEEecccccCcCchhhHHHHHHHHHHHHHHcCCEEEecCccCccccccCccccccHHHHHHHHHHHHhcCCcceEEE
Confidence 899999987763 33444445555556678899999998775321 1112111 136999999
Q ss_pred CCCCC
Q 017539 70 CEGED 74 (369)
Q Consensus 70 ~GG~d 74 (369)
-+|-|
T Consensus 118 i~~CD 122 (571)
T PRK06131 118 LGGCD 122 (571)
T ss_pred EeeCC
Confidence 98853
No 284
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=38.35 E-value=1.6e+02 Score=26.72 Aligned_cols=57 Identities=11% Similarity=-0.000 Sum_probs=33.2
Q ss_pred EEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhc--CCCCEEEECCC
Q 017539 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSF--EPIHGVLLCEG 72 (369)
Q Consensus 13 IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l--~~~DGlll~GG 72 (369)
|||+.... .+.+..-+-....+.+.+.|..+++.... +.....+.+ ..+||||+.+.
T Consensus 2 igvv~~~~--~~~~~~~~~~gi~~~~~~~g~~~~~~~~~-~~~~~~~~l~~~~vdgii~~~~ 60 (261)
T cd06272 2 IGLIWPSV--SRVALTELVTGINQAISKNGYNMNVSITP-SLAEAEDLFKENRFDGVIIFGE 60 (261)
T ss_pred EEEEecCC--CchhHHHHHHHHHHHHHHcCCEEEEEecc-cHHHHHHHHHHcCcCEEEEeCC
Confidence 56665331 23444444455666778889888877543 222222222 27999999864
No 285
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=38.29 E-value=1.3e+02 Score=27.48 Aligned_cols=56 Identities=13% Similarity=-0.162 Sum_probs=32.5
Q ss_pred EEEEecCcccCcCcccccchhHHHHHHHH-CCCEEEEEcCCCChhhhhhhc-CCCCEEEECC
Q 017539 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVG-YGAVPAIVPRVSGVHMLLDSF-EPIHGVLLCE 71 (369)
Q Consensus 12 ~IgIv~~~~~~~~~~~~~v~~~~l~~l~~-~Ga~~vivp~~~~~~~l~~~l-~~~DGlll~G 71 (369)
+||++... .+.+...+.....+++.+ .|..+++...+ ..+.+.... ..+||+|+.+
T Consensus 1 ~ig~i~~~---~~~~~~~~~~gi~~~~~~~~g~~~~~~~~~-~~~~~~~l~~~~vdGiI~~~ 58 (265)
T cd01543 1 RVALLVET---SSSYGRGVLRGIARYAREHGPWSIYLEPRG-LQEPLRWLKDWQGDGIIARI 58 (265)
T ss_pred CeEEEecc---cchhhHHHHHHHHHHHHhcCCeEEEEeccc-chhhhhhccccccceEEEEC
Confidence 46777642 256666666777788888 56665554332 222222211 2799999974
No 286
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=38.27 E-value=1.6e+02 Score=27.98 Aligned_cols=61 Identities=8% Similarity=-0.079 Sum_probs=35.0
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCC--hhh-hhhh-cCCCCEEEECCC
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSG--VHM-LLDS-FEPIHGVLLCEG 72 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~--~~~-l~~~-l~~~DGlll~GG 72 (369)
.+++|+.++..-++..... .....+.+.+.|..+.+...... ... +... -..+|.||+.||
T Consensus 2 ~~~~ii~Np~sg~~~~~~~-~~~i~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~ivv~GG 66 (293)
T TIGR00147 2 AEAPAILNPTAGKSNDNKP-LREVIMLLREEGMEIHVRVTWEKGDAARYVEEARKFGVDTVIAGGG 66 (293)
T ss_pred ceEEEEECCCccchhhHHH-HHHHHHHHHHCCCEEEEEEecCcccHHHHHHHHHhcCCCEEEEECC
Confidence 4788888875433322222 23356778888988766554322 111 1111 135789999999
No 287
>PRK09701 D-allose transporter subunit; Provisional
Probab=37.80 E-value=1.9e+02 Score=27.53 Aligned_cols=60 Identities=13% Similarity=0.059 Sum_probs=36.0
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEc--CCCChh----hhhhhc-CCCCEEEECCC
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVP--RVSGVH----MLLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp--~~~~~~----~l~~~l-~~~DGlll~GG 72 (369)
-.||++... ..+.+...+....-+.+.+.|..+.++. ...+.+ .+...+ ..+||||+.+.
T Consensus 25 ~~Igvi~~~--~~~~f~~~~~~gi~~~a~~~g~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~ 91 (311)
T PRK09701 25 AEYAVVLKT--LSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPL 91 (311)
T ss_pred CeEEEEeCC--CCCHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 367887643 2345555555566677888898888763 222322 122222 36999999865
No 288
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=37.47 E-value=84 Score=26.01 Aligned_cols=91 Identities=22% Similarity=0.199 Sum_probs=48.1
Q ss_pred hhHHHHHHHHCCCEEEEEcCCCC-------hhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCC
Q 017539 31 GEYHLDLIVGYGAVPAIVPRVSG-------VHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDT 103 (369)
Q Consensus 31 ~~~~l~~l~~~Ga~~vivp~~~~-------~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~ 103 (369)
+...++.+.+.|..+..|....+ ...+.+.-..+|.+++.-.++. .++.++++.++.....
T Consensus 16 g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~~~------------~~~~v~~~~~~g~~~v 83 (116)
T PF13380_consen 16 GYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPPDK------------VPEIVDEAAALGVKAV 83 (116)
T ss_dssp HHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-HHH------------HHHHHHHHHHHT-SEE
T ss_pred HHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCHHH------------HHHHHHHHHHcCCCEE
Confidence 44567778889988888865432 1233332246888888755321 1233455555543322
Q ss_pred ccCchhhHHHHHHHHHHHHcCCCEE-EEeHHHH
Q 017539 104 AIDKEKDSIELRLAKLCLERNIPYL-GICRGSQ 135 (369)
Q Consensus 104 ~~~~~rd~~e~~li~~~~e~~iPiL-GIClG~Q 135 (369)
.+.+. ..+.++++.+.+.+++++ .=|.|+.
T Consensus 84 ~~~~g--~~~~~~~~~a~~~gi~vigp~C~gv~ 114 (116)
T PF13380_consen 84 WLQPG--AESEELIEAAREAGIRVIGPNCLGVV 114 (116)
T ss_dssp EE-TT--S--HHHHHHHHHTT-EEEESS-HHHH
T ss_pred EEEcc--hHHHHHHHHHHHcCCEEEeCCcceEE
Confidence 22222 334578888889999999 5799875
No 289
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=37.37 E-value=2.1e+02 Score=25.83 Aligned_cols=58 Identities=7% Similarity=-0.065 Sum_probs=34.5
Q ss_pred EEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCC-Chh---hhh-hhc-CCCCEEEECCC
Q 017539 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS-GVH---MLL-DSF-EPIHGVLLCEG 72 (369)
Q Consensus 13 IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~-~~~---~l~-~~l-~~~DGlll~GG 72 (369)
|||+... ..+.+...+.....+.+.+.|..+++..... +.+ .+. ... ..+|||++.+.
T Consensus 2 i~vi~~~--~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 65 (264)
T cd01574 2 IGVVTTD--LALHGPSSTLAAIESAAREAGYAVTLSMLAEADEEALRAAVRRLLAQRVDGVIVNAP 65 (264)
T ss_pred EEEEeCC--CCcccHHHHHHHHHHHHHHCCCeEEEEeCCCCchHHHHHHHHHHHhcCCCEEEEeCC
Confidence 6666532 2244555566666778888999888776432 211 111 111 36999999765
No 290
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=37.21 E-value=2.3e+02 Score=26.87 Aligned_cols=60 Identities=10% Similarity=0.119 Sum_probs=35.3
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhh---hhc--CCCCEEEECCC
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLL---DSF--EPIHGVLLCEG 72 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~---~~l--~~~DGlll~GG 72 (369)
-.||++... ..+.+...+-....+.+.+.|..+++.....+.+... +.+ ..+||||+.+.
T Consensus 60 ~~Igvv~~~--~~~~f~~~l~~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~ 124 (329)
T TIGR01481 60 TTVGVIIPD--ISNIYYAELARGIEDIATMYKYNIILSNSDEDPEKEVQVLNTLLSKQVDGIIFMGG 124 (329)
T ss_pred CEEEEEeCC--CCchhHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 478887643 1234444444555567788899888776543332211 111 36999999754
No 291
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=37.17 E-value=1.1e+02 Score=28.02 Aligned_cols=40 Identities=15% Similarity=0.090 Sum_probs=30.4
Q ss_pred HHHHHHHHCCCEE-EEEcCCCChhhhhhhcCCCCEEEECCC
Q 017539 33 YHLDLIVGYGAVP-AIVPRVSGVHMLLDSFEPIHGVLLCEG 72 (369)
Q Consensus 33 ~~l~~l~~~Ga~~-vivp~~~~~~~l~~~l~~~DGlll~GG 72 (369)
..++.++++|..+ +.+...++.+.+...++.+|.|++..-
T Consensus 96 ~~i~~ik~~g~k~GialnP~T~~~~~~~~l~~vD~VlvMsV 136 (201)
T PF00834_consen 96 ETIKYIKEAGIKAGIALNPETPVEELEPYLDQVDMVLVMSV 136 (201)
T ss_dssp HHHHHHHHTTSEEEEEE-TTS-GGGGTTTGCCSSEEEEESS
T ss_pred HHHHHHHHhCCCEEEEEECCCCchHHHHHhhhcCEEEEEEe
Confidence 3678899999987 445555677888889999999999764
No 292
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=36.97 E-value=1.5e+02 Score=24.92 Aligned_cols=66 Identities=20% Similarity=0.168 Sum_probs=44.5
Q ss_pred hhHHHHHHHHCCCEEEEEcCC--------CChhhhhh---hc--CCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHh
Q 017539 31 GEYHLDLIVGYGAVPAIVPRV--------SGVHMLLD---SF--EPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRR 97 (369)
Q Consensus 31 ~~~~l~~l~~~Ga~~vivp~~--------~~~~~l~~---~l--~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~ 97 (369)
...+.++++..|..++.++.. .+..-..+ .. ..+|.++|..| |-+
T Consensus 54 ~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~D~~l~~d~~~~~~~~~~d~ivLvSg---D~D------------------- 111 (149)
T cd06167 54 QRGFLDALRRLGFEPIQKPLRTRGSGKKGVDVALAIDALELAYKRRIDTIVLVSG---DSD------------------- 111 (149)
T ss_pred HHHHHHHHHHCCcEEEEEcceecCCcccCccHHHHHHHHHHhhhcCCCEEEEEEC---Ccc-------------------
Confidence 456889999999999988842 22211111 11 25899888877 210
Q ss_pred hcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHH
Q 017539 98 LHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRG 133 (369)
Q Consensus 98 ~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG 133 (369)
-..+++.+.+.|+.+..+|..
T Consensus 112 ---------------f~~~i~~lr~~G~~V~v~~~~ 132 (149)
T cd06167 112 ---------------FVPLVERLRELGKRVIVVGFE 132 (149)
T ss_pred ---------------HHHHHHHHHHcCCEEEEEccC
Confidence 135778888889999999976
No 293
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=36.95 E-value=2.4e+02 Score=25.72 Aligned_cols=58 Identities=10% Similarity=0.099 Sum_probs=35.6
Q ss_pred EEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhc-----CCCCEEEECCC
Q 017539 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSF-----EPIHGVLLCEG 72 (369)
Q Consensus 13 IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l-----~~~DGlll~GG 72 (369)
|||+... ..+.+...+.....+++.+.|..+.+.....+.+...+.+ ..+||||+.+-
T Consensus 2 Ig~i~~~--~~~~~~~~~~~gi~~~~~~~gy~v~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~ 64 (269)
T cd06293 2 IGLVVPD--IANPFFAELADAVEEEADARGLSLVLCATRNRPERELTYLRWLDTNHVDGLIFVTN 64 (269)
T ss_pred EEEEeCC--CCCCcHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 6666532 1245555566667788899999998775433332211111 26999999864
No 294
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=36.94 E-value=93 Score=27.71 Aligned_cols=58 Identities=14% Similarity=0.056 Sum_probs=32.5
Q ss_pred cEEEEec-CcccCcCcccccchhHHHHHHHHCCC-----EEEEEcCCCC-hhhhhhhc--CCCCEEEECC
Q 017539 11 PRVLIVS-RRSVRKNKFVDFVGEYHLDLIVGYGA-----VPAIVPRVSG-VHMLLDSF--EPIHGVLLCE 71 (369)
Q Consensus 11 P~IgIv~-~~~~~~~~~~~~v~~~~l~~l~~~Ga-----~~vivp~~~~-~~~l~~~l--~~~DGlll~G 71 (369)
.+|+|+. ++. ....+-+-+.-++.+.+.|+ .++.||=... +-.+.... ..+||+|-.|
T Consensus 11 ~riaIV~srfn---~~It~~Ll~gA~~~l~~~G~~~~~i~v~~VPGA~EiP~~a~~l~~~~~yDaiIaLG 77 (158)
T PRK12419 11 QRIAFIQARWH---ADIVDQARKGFVAEIAARGGAASQVDIFDVPGAFEIPLHAQTLAKTGRYAAIVAAA 77 (158)
T ss_pred CEEEEEEecCC---HHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 5888885 442 23445555666788899994 4444552111 11111111 3699998887
No 295
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=36.94 E-value=1.7e+02 Score=29.30 Aligned_cols=87 Identities=18% Similarity=0.240 Sum_probs=53.2
Q ss_pred hHHHHHHHHCCCEEEEEcCCCChhhhhhhcC-CCCEEEECC--CCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCch
Q 017539 32 EYHLDLIVGYGAVPAIVPRVSGVHMLLDSFE-PIHGVLLCE--GEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKE 108 (369)
Q Consensus 32 ~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~-~~DGlll~G--G~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 108 (369)
-..++++++..-.|++|.-....++.....+ .+|+|+++| |..+|. ... +
T Consensus 202 ~~~i~~l~~~~~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhgG~~~d~-----~~~---------------------~- 254 (344)
T cd02922 202 WDDIKWLRKHTKLPIVLKGVQTVEDAVLAAEYGVDGIVLSNHGGRQLDT-----APA---------------------P- 254 (344)
T ss_pred HHHHHHHHHhcCCcEEEEcCCCHHHHHHHHHcCCCEEEEECCCcccCCC-----CCC---------------------H-
Confidence 3468899988778888886666555544443 799999996 323221 110 0
Q ss_pred hhHHHHHHHHHHH---HcCCCEE---EEeHHHHHH-HHHhCCeeee
Q 017539 109 KDSIELRLAKLCL---ERNIPYL---GICRGSQVL-NVACGGTLYQ 147 (369)
Q Consensus 109 rd~~e~~li~~~~---e~~iPiL---GIClG~QlL-~~a~GG~l~~ 147 (369)
...+..+..+. ..++||+ ||..|..++ +.++|++...
T Consensus 255 --~~~L~~i~~~~~~~~~~~~vi~~GGIr~G~Dv~kalaLGA~aV~ 298 (344)
T cd02922 255 --IEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKALCLGAKAVG 298 (344)
T ss_pred --HHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 00112222222 2358999 899999998 4577888654
No 296
>PRK00549 competence damage-inducible protein A; Provisional
Probab=36.49 E-value=1.2e+02 Score=31.00 Aligned_cols=63 Identities=11% Similarity=0.045 Sum_probs=36.9
Q ss_pred EEEEecC-cccCcCcccccchhHHHHHHHHCCCEEEEEcCC-CChh----hhhhhcCCCCEEEECCCCC
Q 017539 12 RVLIVSR-RSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRV-SGVH----MLLDSFEPIHGVLLCEGED 74 (369)
Q Consensus 12 ~IgIv~~-~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~-~~~~----~l~~~l~~~DGlll~GG~d 74 (369)
+++|++- .....+...|.-.....+++.+.|..+..+... ++.+ .+....+..|-||++||-+
T Consensus 2 ~~~ii~~G~Ell~G~i~DtN~~~L~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~~~DlVItTGGlG 70 (414)
T PRK00549 2 KAEIIAVGTELLLGQIVNTNAQFLSEKLAELGIDVYHQTVVGDNPERLLSALEIAEERSDLIITTGGLG 70 (414)
T ss_pred EEEEEEecccccCCceeEhhHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHhccCCCEEEECCCCC
Confidence 4555543 223345555554445556788999887644322 2333 3334456799999999853
No 297
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.66 E-value=1.1e+02 Score=29.41 Aligned_cols=55 Identities=9% Similarity=0.062 Sum_probs=28.3
Q ss_pred EEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCCh-h----hhhhhcCCCCEEEECCC
Q 017539 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGV-H----MLLDSFEPIHGVLLCEG 72 (369)
Q Consensus 12 ~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~-~----~l~~~l~~~DGlll~GG 72 (369)
+|||+.+.... ...-+.....+|+ ..|..+++-...... . .. ... .+|.+|.-||
T Consensus 2 ~i~iv~~~~~~---~~~~~~~~i~~~l-~~g~~~~~~~~~~~~~~~~~~~~-~~~-~~D~vi~lGG 61 (271)
T PRK01185 2 KVAFVIRKDCK---RCIKIAKSIIELL-PPDWEIIYEMEAAKALGMDGLDI-EEI-NADVIITIGG 61 (271)
T ss_pred EEEEEecCCCH---HHHHHHHHHHHHH-hcCCEEEEechhhhhcCcccCcc-ccc-CCCEEEEEcC
Confidence 38888776421 1112233456667 568776653311100 0 00 111 5899998999
No 298
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=35.34 E-value=65 Score=32.50 Aligned_cols=46 Identities=28% Similarity=0.369 Sum_probs=31.1
Q ss_pred hhhhhcCCCCEEEECCCC-CCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEe
Q 017539 56 MLLDSFEPIHGVLLCEGE-DIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGIC 131 (369)
Q Consensus 56 ~l~~~l~~~DGlll~GG~-didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIC 131 (369)
.+++.++.+|-||.-.|- | ..+.++..+ ..+++.|.+.++|+++||
T Consensus 277 ~le~~v~daDLVITGEGr~D-~Qs~~GK~p-----------------------------igVA~~Akk~~vPvIaia 323 (378)
T COG1929 277 NLEDAVKDADLVITGEGRID-SQSLHGKTP-----------------------------IGVAKLAKKYGVPVIAIA 323 (378)
T ss_pred CHHHhhccCCEEEeCCCccc-ccccCCccc-----------------------------hHHHHhhhhhCCCEEEEe
Confidence 455666788877666674 3 234444433 357777778899999999
No 299
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=35.06 E-value=1.1e+02 Score=31.12 Aligned_cols=84 Identities=19% Similarity=0.275 Sum_probs=51.0
Q ss_pred HHHHHHHCCCEEEEEcCCCChhhhhhhcC-CCCEEEECCCC--CCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhh
Q 017539 34 HLDLIVGYGAVPAIVPRVSGVHMLLDSFE-PIHGVLLCEGE--DIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKD 110 (369)
Q Consensus 34 ~l~~l~~~Ga~~vivp~~~~~~~l~~~l~-~~DGlll~GG~--didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd 110 (369)
.++||++.=-.|+++.-+.+.++.....+ .+|||+++|.+ .++. ... .
T Consensus 236 di~~lr~~~~~pvivKgV~s~~dA~~a~~~Gvd~I~Vs~hGGr~~d~-----~~~---------------------t--- 286 (381)
T PRK11197 236 DLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDG-----VLS---------------------S--- 286 (381)
T ss_pred HHHHHHHhCCCCEEEEecCCHHHHHHHHhCCCCEEEECCCCCCCCCC-----ccc---------------------H---
Confidence 48888886666777776666655544443 79999999732 2211 010 0
Q ss_pred HHHHHHHHHHHHcCCCEE---EEeHHHHHHH-HHhCCeee
Q 017539 111 SIELRLAKLCLERNIPYL---GICRGSQVLN-VACGGTLY 146 (369)
Q Consensus 111 ~~e~~li~~~~e~~iPiL---GIClG~QlL~-~a~GG~l~ 146 (369)
...+..+..+...++||+ ||-.|..++- .++|++..
T Consensus 287 ~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KALaLGA~~V 326 (381)
T PRK11197 287 ARALPAIADAVKGDITILADSGIRNGLDVVRMIALGADTV 326 (381)
T ss_pred HHHHHHHHHHhcCCCeEEeeCCcCcHHHHHHHHHcCcCce
Confidence 011222334444579999 8999998874 56787643
No 300
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=34.65 E-value=1.8e+02 Score=27.08 Aligned_cols=47 Identities=21% Similarity=0.145 Sum_probs=31.8
Q ss_pred CcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCC
Q 017539 24 NKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEG 72 (369)
Q Consensus 24 ~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG 72 (369)
+.+...+-....+.+.+.|..+++.......+.+. -.++||||+.+.
T Consensus 19 ~~~~~~~~~~i~~~~~~~gy~~~~~~~~~~~~~l~--~~~vdgiIi~~~ 65 (269)
T cd06287 19 LGFMMEVAAAAAESALERGLALCLVPPHEADSPLD--ALDIDGAILVEP 65 (269)
T ss_pred CccHHHHHHHHHHHHHHCCCEEEEEeCCCchhhhh--ccCcCeEEEecC
Confidence 45555566667788899999999887643323332 237999999754
No 301
>PF09075 STb_secrete: Heat-stable enterotoxin B, secretory; InterPro: IPR015160 Members of this family assume a helical secondary structure, with two alpha helices forming a disulphide cross-linked alpha-helical hairpin. The disulphide bonds are crucial for the toxic activity of the protein, and are required for maintenance of the tertiary structure, and subsequent interaction with the particulate form of guanylate cyclase, increasing cyclic GMP levels within the host intestinal epithelial cells []. ; PDB: 1EHS_A.
Probab=34.20 E-value=8.8 Score=26.09 Aligned_cols=17 Identities=35% Similarity=0.585 Sum_probs=11.3
Q ss_pred CEEEEeHHHHHHHHHhC
Q 017539 126 PYLGICRGSQVLNVACG 142 (369)
Q Consensus 126 PiLGIClG~QlL~~a~G 142 (369)
-.-|.|.|.|+|..+-|
T Consensus 31 gtagacfgaqimvaakg 47 (48)
T PF09075_consen 31 GTAGACFGAQIMVAAKG 47 (48)
T ss_dssp SS--TTTTTHHHHTTT-
T ss_pred Cccccccchhhhhhccc
Confidence 45688999999986644
No 302
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=33.98 E-value=2.2e+02 Score=24.81 Aligned_cols=59 Identities=12% Similarity=-0.050 Sum_probs=31.8
Q ss_pred EEEecCcccCcCcccccchhHHHHHHHH--CCCEEEEEcCCCChh----hhhhhc-CCCCEEEECCC
Q 017539 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVG--YGAVPAIVPRVSGVH----MLLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 13 IgIv~~~~~~~~~~~~~v~~~~l~~l~~--~Ga~~vivp~~~~~~----~l~~~l-~~~DGlll~GG 72 (369)
||++..... .+.+...+.....+++.+ .|...+++....+.+ .+.... +.+|||++++.
T Consensus 2 Ig~i~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~ 67 (269)
T cd01391 2 IGVLLPLSG-SAPFGAQLLAGIELAAEEIGRGLEVILADSQSDPERALEALRDLIQQGVDGIIGPPS 67 (269)
T ss_pred ceEEeecCC-CcHHHHHHHHHHHHHHHHhCCceEEEEecCCCCHHHHHHHHHHHHHcCCCEEEecCC
Confidence 555543221 223334444445566777 788887776544321 112222 26999999876
No 303
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.43 E-value=48 Score=31.86 Aligned_cols=21 Identities=19% Similarity=0.107 Sum_probs=16.0
Q ss_pred HHHHHHHHHcCCCEEEEeHHH
Q 017539 114 LRLAKLCLERNIPYLGICRGS 134 (369)
Q Consensus 114 ~~li~~~~e~~iPiLGIClG~ 134 (369)
+..++.+...++|++||=.|.
T Consensus 47 L~a~~~~~~~~iPilGIN~G~ 67 (259)
T PRK00561 47 VSTAANYNCAGCKVVGINTGH 67 (259)
T ss_pred HHHHHHhcCCCCcEEEEecCC
Confidence 456666666789999999884
No 304
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=33.43 E-value=70 Score=27.76 Aligned_cols=49 Identities=16% Similarity=0.182 Sum_probs=29.4
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCC---CChhhhhhhcC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRV---SGVHMLLDSFE 62 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~---~~~~~l~~~l~ 62 (369)
+|+||||+--+.-... =-+.--+||..+|+.+|.+-.. .+.+++.+.|.
T Consensus 91 k~vIgvVTK~DLaed~----dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~ 142 (148)
T COG4917 91 KKVIGVVTKADLAEDA----DISLVKRWLREAGAEPIFETSAVDNQGVEELVDYLA 142 (148)
T ss_pred cceEEEEecccccchH----hHHHHHHHHHHcCCcceEEEeccCcccHHHHHHHHH
Confidence 6799999876532111 1122346899999999876532 23455554443
No 305
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=33.25 E-value=2.4e+02 Score=26.95 Aligned_cols=59 Identities=14% Similarity=0.078 Sum_probs=35.0
Q ss_pred EEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEEC
Q 017539 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLC 70 (369)
Q Consensus 12 ~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~ 70 (369)
+|+|+..-.+......=.-+....+++++.|..++++....+.-.....+..+|.|+..
T Consensus 2 ~v~v~~gg~s~e~~~sl~s~~~i~~al~~~g~~~~~i~~~~~~~~~~~~~~~~D~v~~~ 60 (299)
T PRK14571 2 RVALLMGGVSREREISLRSGERVKKALEKLGYEVTVFDVDEDFLKKVDQLKSFDVVFNV 60 (299)
T ss_pred eEEEEeCCCCCCccchHHHHHHHHHHHHHcCCeEEEEccCchHHHHhhhccCCCEEEEe
Confidence 57777654433333333445567789999999999886543221112223468877764
No 306
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=33.21 E-value=1.8e+02 Score=27.35 Aligned_cols=49 Identities=10% Similarity=0.173 Sum_probs=27.4
Q ss_pred CcccccchhHHHHHHHHCCCE-EEEE-cCCCChh----hhhhhc-CCCCEEEECCC
Q 017539 24 NKFVDFVGEYHLDLIVGYGAV-PAIV-PRVSGVH----MLLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 24 ~~~~~~v~~~~l~~l~~~Ga~-~viv-p~~~~~~----~l~~~l-~~~DGlll~GG 72 (369)
+.+...+-....+...+.|.. ++.. +...+.+ .+.... ..+|||++.+.
T Consensus 10 ~~f~~~~~~gi~~~a~~~g~~~~i~~~~~~~d~~~q~~~i~~l~~~~vdgiIi~~~ 65 (302)
T TIGR02637 10 NPFFEAANKGAEEAAKELGSVYIIYTGPTGTTAEGQIEVVNSLIAQKVDAIAISAN 65 (302)
T ss_pred CHHHHHHHHHHHHHHHHhCCeeEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 455555666667778888944 4433 2222322 122211 37999999753
No 307
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=32.41 E-value=1.9e+02 Score=29.40 Aligned_cols=87 Identities=11% Similarity=0.203 Sum_probs=50.4
Q ss_pred HHHHHHHHCCCEEEEEcCCCChhhhhhhc-CCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhH
Q 017539 33 YHLDLIVGYGAVPAIVPRVSGVHMLLDSF-EPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDS 111 (369)
Q Consensus 33 ~~l~~l~~~Ga~~vivp~~~~~~~l~~~l-~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~ 111 (369)
..+++|++.=-.|+++.-..+.++..... ..+|||+++|.++-. .+..+. . .
T Consensus 243 ~~i~~lr~~~~~pvivKgV~~~~dA~~a~~~G~d~I~vsnhGGr~---~d~~~~---------------------t---~ 295 (383)
T cd03332 243 EDLAFLREWTDLPIVLKGILHPDDARRAVEAGVDGVVVSNHGGRQ---VDGSIA---------------------A---L 295 (383)
T ss_pred HHHHHHHHhcCCCEEEecCCCHHHHHHHHHCCCCEEEEcCCCCcC---CCCCcC---------------------H---H
Confidence 46788887634577776555555444333 389999999743200 000110 0 1
Q ss_pred HHHHHHHHHHHcCCCEE---EEeHHHHHHH-HHhCCeee
Q 017539 112 IELRLAKLCLERNIPYL---GICRGSQVLN-VACGGTLY 146 (369)
Q Consensus 112 ~e~~li~~~~e~~iPiL---GIClG~QlL~-~a~GG~l~ 146 (369)
..+.-++.+...++||+ ||-.|..++- .++|++..
T Consensus 296 ~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALaLGA~~v 334 (383)
T cd03332 296 DALPEIVEAVGDRLTVLFDSGVRTGADIMKALALGAKAV 334 (383)
T ss_pred HHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHHcCCCEE
Confidence 11233344444569999 8999998884 47788744
No 308
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=32.36 E-value=50 Score=31.48 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=16.2
Q ss_pred HHHHHHHHHcCCCEEEEeHHH
Q 017539 114 LRLAKLCLERNIPYLGICRGS 134 (369)
Q Consensus 114 ~~li~~~~e~~iPiLGIClG~ 134 (369)
+..++.+...++|||||=.|.
T Consensus 39 L~a~~~~~~~~~PvlGIN~G~ 59 (246)
T PRK04761 39 LQTLHRYMNSGKPVYGMNRGS 59 (246)
T ss_pred HHHHHHhcCCCCeEEEEeCCC
Confidence 456666666789999999884
No 309
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=32.30 E-value=89 Score=29.10 Aligned_cols=40 Identities=20% Similarity=0.240 Sum_probs=31.8
Q ss_pred HHHHHHHHCCCEEE-EEcCCCChhhhhhhcCCCCEEEECCC
Q 017539 33 YHLDLIVGYGAVPA-IVPRVSGVHMLLDSFEPIHGVLLCEG 72 (369)
Q Consensus 33 ~~l~~l~~~Ga~~v-ivp~~~~~~~l~~~l~~~DGlll~GG 72 (369)
..++.++++|+.+- .+...++.+.+...++.+|.|++.+.
T Consensus 97 ~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV 137 (220)
T PRK08883 97 RTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSV 137 (220)
T ss_pred HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEEe
Confidence 46788999998885 44455677888888999999999754
No 310
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=31.85 E-value=1.2e+02 Score=28.43 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=31.6
Q ss_pred HHHHHHHHCCCEE-EEEcCCCChhhhhhhcCCCCEEEECCC
Q 017539 33 YHLDLIVGYGAVP-AIVPRVSGVHMLLDSFEPIHGVLLCEG 72 (369)
Q Consensus 33 ~~l~~l~~~Ga~~-vivp~~~~~~~l~~~l~~~DGlll~GG 72 (369)
..++.++++|+++ +.+...++.+.+..+++.+|.|++..-
T Consensus 101 ~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvMtV 141 (223)
T PRK08745 101 RTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSV 141 (223)
T ss_pred HHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEEEE
Confidence 4678899999887 445555678888889999999999754
No 311
>PRK08005 epimerase; Validated
Probab=30.54 E-value=1.7e+02 Score=27.16 Aligned_cols=40 Identities=10% Similarity=-0.016 Sum_probs=31.1
Q ss_pred HHHHHHHHCCCEE-EEEcCCCChhhhhhhcCCCCEEEECCC
Q 017539 33 YHLDLIVGYGAVP-AIVPRVSGVHMLLDSFEPIHGVLLCEG 72 (369)
Q Consensus 33 ~~l~~l~~~Ga~~-vivp~~~~~~~l~~~l~~~DGlll~GG 72 (369)
..++.+++.|+.+ +.+...++.+.+...++.+|.|++..-
T Consensus 97 ~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~vD~VlvMsV 137 (210)
T PRK08005 97 EILADIRAIGAKAGLALNPATPLLPYRYLALQLDALMIMTS 137 (210)
T ss_pred HHHHHHHHcCCcEEEEECCCCCHHHHHHHHHhcCEEEEEEe
Confidence 4678899999887 445555677888888889999999754
No 312
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=30.44 E-value=1.1e+02 Score=27.71 Aligned_cols=59 Identities=10% Similarity=0.050 Sum_probs=35.7
Q ss_pred EEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhhc-CCCCEEEECCC
Q 017539 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 13 IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~----l~~~l-~~~DGlll~GG 72 (369)
||++.... ..+.+...+-....+.+.+.|..+++.+...+.+. +.... ..+||||+.+.
T Consensus 2 ig~v~~~~-~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiii~~~ 65 (269)
T cd06288 2 IGLISDEI-ATTPFAVEIILGAQDAAREHGYLLLVVNTGGDDELEAEAVEALLDHRVDGIIYATM 65 (269)
T ss_pred eEEEeCCC-CCCccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 66665432 12455555555666778889999888775544321 11112 26999999864
No 313
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=30.43 E-value=1.5e+02 Score=28.20 Aligned_cols=55 Identities=15% Similarity=0.163 Sum_probs=37.6
Q ss_pred CCCCCcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCC
Q 017539 6 LSVILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEG 72 (369)
Q Consensus 6 ~~~~~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG 72 (369)
+....|+|--++++.. ...-.+.+...|+.|++.. .++++.+.....|++++--|
T Consensus 9 ~~~~~plv~~itN~vt---------~~~~An~~la~g~sp~m~~---~~~e~~~~~~~~~alvi~~G 63 (263)
T PRK09355 9 VREKNPLVHNITNDVV---------MNFTANGLLALGASPAMAH---APEEAEEMAKIAGALVINIG 63 (263)
T ss_pred HHhcCCeEEEecccch---------hhhHHHHHHHhCCCcccCC---CHHHHHHHHHhcCceEEeCC
Confidence 3455788877777632 1123456778999999964 55677777778999999434
No 314
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=29.26 E-value=3e+02 Score=25.95 Aligned_cols=59 Identities=7% Similarity=-0.059 Sum_probs=35.6
Q ss_pred CCcEEEEecCcccC----cCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCC
Q 017539 9 ILPRVLIVSRRSVR----KNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGE 73 (369)
Q Consensus 9 ~~P~IgIv~~~~~~----~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~ 73 (369)
..|+|++++..... ......--.......|++. ..+..+... .+.+ .+.+|.|||.|..
T Consensus 145 ~~~~V~~l~ghge~~~~~~~~~~~~~~~~l~~~L~~~-y~V~~~~l~--~~~I---P~~~d~Lvi~~P~ 207 (271)
T PF09822_consen 145 EKPKVYFLTGHGERGGGSMPNSQSTSYSSLKSLLEKN-YDVEELNLA--NEEI---PDDADVLVIAGPK 207 (271)
T ss_pred cCceEEEEccccccccccccccCcchHHHHHHHHHhc-CceeecCCc--cccc---CCCCCEEEEECCC
Confidence 47999999876543 0111112223456677777 777776543 2233 3479999999764
No 315
>PRK11914 diacylglycerol kinase; Reviewed
Probab=28.92 E-value=2.8e+02 Score=26.66 Aligned_cols=61 Identities=8% Similarity=0.079 Sum_probs=34.2
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCC--Chhhhh-hh-cCCCCEEEECCC
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS--GVHMLL-DS-FEPIHGVLLCEG 72 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~--~~~~l~-~~-l~~~DGlll~GG 72 (369)
.++.|+-++.+-++..... .+..++.+++.|....++.... +...+. +. .+.+|.||+.||
T Consensus 9 ~~~~iI~NP~sG~g~~~~~-~~~~~~~l~~~g~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~GG 73 (306)
T PRK11914 9 GKVTVLTNPLSGHGAAPHA-AERAIARLHHRGVDVVEIVGTDAHDARHLVAAALAKGTDALVVVGG 73 (306)
T ss_pred ceEEEEECCCCCCCcHHHH-HHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEECC
Confidence 4677777775433332222 2234677888998766544322 112222 11 246899999999
No 316
>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]
Probab=28.72 E-value=4.2e+02 Score=25.05 Aligned_cols=112 Identities=18% Similarity=0.186 Sum_probs=57.1
Q ss_pred EEecCcccCcCcccccchhHHHHHHHH----CCCEEEEEcCCCCh---hhhhhhcCCCCEEEECCCCCCCCCCccccCCC
Q 017539 14 LIVSRRSVRKNKFVDFVGEYHLDLIVG----YGAVPAIVPRVSGV---HMLLDSFEPIHGVLLCEGEDIDPSLYEAETSN 86 (369)
Q Consensus 14 gIv~~~~~~~~~~~~~v~~~~l~~l~~----~Ga~~vivp~~~~~---~~l~~~l~~~DGlll~GG~didp~~y~~~~~~ 86 (369)
.|++.|+...+.....-.+.|++.+.+ .|+.-+=|-..... +.+.....+.+ +|+|-= | +...+
T Consensus 60 ~IfT~R~~~EGG~~~~~~~~~i~ll~~la~~~~~d~iDiEl~~~~~~~~~~~~~~~~~~-vI~SyH-~-----F~~TP-- 130 (231)
T COG0710 60 LIFTFRTVKEGGEFPGSEEEYIELLKKLAELNGPDYIDIELSSPEDDVKEIIKFAKKHG-VIVSYH-D-----FEKTP-- 130 (231)
T ss_pred eEEEEeehhhcCCCCCCHHHHHHHHHHHHhhcCCCEEEEEccCcchhHHHHHhccccCC-EEEEec-c-----CCCCC--
Confidence 355666554455555666777776665 34444544444332 23333222333 777732 1 22222
Q ss_pred CChhHH-HHHHhhcCCCCc-----cCchhhHHHHHHHHHHHH---cCCCEEEEeHHHH
Q 017539 87 LSPEEL-EEIRRLHTSDTA-----IDKEKDSIELRLAKLCLE---RNIPYLGICRGSQ 135 (369)
Q Consensus 87 ~~~~~~-~~i~~~~~~~~~-----~~~~rd~~e~~li~~~~e---~~iPiLGIClG~Q 135 (369)
+.||+ +++++....... +.+....--+.+++...+ .+.|+.+||+|=-
T Consensus 131 -~~~~i~~~l~km~~~~aDivKiAvm~~~~~DvL~ll~~~~~~~~~~~p~i~i~MG~~ 187 (231)
T COG0710 131 -PLEEIIERLDKMESLGADIVKIAVMPQSKEDVLDLLEATREFKEAEKPVITISMGKT 187 (231)
T ss_pred -cHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHHHHHHHHhccccCCCEEEEecCCC
Confidence 23454 555544443321 122222223466666665 6899999999844
No 317
>PRK08227 autoinducer 2 aldolase; Validated
Probab=28.65 E-value=2.2e+02 Score=27.38 Aligned_cols=61 Identities=8% Similarity=-0.020 Sum_probs=36.0
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcC-CCCEEEECCCCC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFE-PIHGVLLCEGED 74 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~-~~DGlll~GG~d 74 (369)
+|++++..+....++. .+ +-.+-.+.-...||..|-++|.. +...+..+ ..--||+.||+.
T Consensus 141 ~Plla~~prG~~~~~~-~~-~ia~aaRiaaELGADiVK~~y~~--~~f~~vv~a~~vPVviaGG~k 202 (264)
T PRK08227 141 MPVMAVTAVGKDMVRD-AR-YFSLATRIAAEMGAQIIKTYYVE--EGFERITAGCPVPIVIAGGKK 202 (264)
T ss_pred CcEEEEecCCCCcCch-HH-HHHHHHHHHHHHcCCEEecCCCH--HHHHHHHHcCCCcEEEeCCCC
Confidence 7888865433222221 22 33444666777899999999864 23333322 234688999964
No 318
>COG0129 IlvD Dihydroxyacid dehydratase/phosphogluconate dehydratase [Amino acid transport and metabolism / Carbohydrate transport and metabolism]
Probab=28.55 E-value=1.2e+02 Score=32.41 Aligned_cols=42 Identities=14% Similarity=0.063 Sum_probs=29.6
Q ss_pred CCcEEEEecCccc--CcCcccccchhHHHHHHHHCCCEEEEEcC
Q 017539 9 ILPRVLIVSRRSV--RKNKFVDFVGEYHLDLIVGYGAVPAIVPR 50 (369)
Q Consensus 9 ~~P~IgIv~~~~~--~~~~~~~~v~~~~l~~l~~~Ga~~vivp~ 50 (369)
.+|.|||++.++. ..|....-+.+.--+.++++|+.++-.+.
T Consensus 41 ~kP~IgI~~s~~d~~p~h~hl~~l~~~vk~~i~~aGg~p~ef~t 84 (575)
T COG0129 41 GKPIIGIANSYNDMVPGHQHLKDLAQLVKEGIREAGGVPVEFGT 84 (575)
T ss_pred CCCeEEEEeccccCcCchhhHHHHHHHHHHHHHHcCCceeEeCC
Confidence 6899999988763 23333444455566778999999986664
No 319
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=28.42 E-value=1.5e+02 Score=25.99 Aligned_cols=58 Identities=12% Similarity=0.029 Sum_probs=39.3
Q ss_pred CCcEEEEecCcccCcCcccccchhH-HHHHHHHCCCEEEEEcCCCChhhhhhhc--CCCCEEEECC
Q 017539 9 ILPRVLIVSRRSVRKNKFVDFVGEY-HLDLIVGYGAVPAIVPRVSGVHMLLDSF--EPIHGVLLCE 71 (369)
Q Consensus 9 ~~P~IgIv~~~~~~~~~~~~~v~~~-~l~~l~~~Ga~~vivp~~~~~~~l~~~l--~~~DGlll~G 71 (369)
.+|+|+|...-.. .+. .+.. ..+++...|..++..+...+++++.... +..|.|.+|+
T Consensus 11 ~rprvlvak~GlD-gHd----~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSs 71 (143)
T COG2185 11 ARPRVLVAKLGLD-GHD----RGAKVIARALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGVSS 71 (143)
T ss_pred CCceEEEeccCcc-ccc----cchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhcCCCEEEEEe
Confidence 5899999865421 111 1112 3457889999999988777766655444 5799999996
No 320
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=28.40 E-value=1.3e+02 Score=28.30 Aligned_cols=40 Identities=10% Similarity=0.011 Sum_probs=31.2
Q ss_pred HHHHHHHHCCCEE-EEEcCCCChhhhhhhcCCCCEEEECCC
Q 017539 33 YHLDLIVGYGAVP-AIVPRVSGVHMLLDSFEPIHGVLLCEG 72 (369)
Q Consensus 33 ~~l~~l~~~Ga~~-vivp~~~~~~~l~~~l~~~DGlll~GG 72 (369)
..++.++++|+++ +.+...++.+.+..+++.+|.|++..-
T Consensus 99 ~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~vD~VLvMsV 139 (229)
T PRK09722 99 RLIDEIRRAGMKVGLVLNPETPVESIKYYIHLLDKITVMTV 139 (229)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHhcCEEEEEEE
Confidence 4668888999887 445555678888889999999999754
No 321
>PLN02404 6,7-dimethyl-8-ribityllumazine synthase
Probab=28.09 E-value=1.5e+02 Score=25.89 Aligned_cols=61 Identities=15% Similarity=-0.030 Sum_probs=33.7
Q ss_pred CCCcEEEEec-CcccCcCcccccchhHHHHHHHHCCCE-----EEEEcCCCC-hhhhhhhc--CCCCEEEECC
Q 017539 8 VILPRVLIVS-RRSVRKNKFVDFVGEYHLDLIVGYGAV-----PAIVPRVSG-VHMLLDSF--EPIHGVLLCE 71 (369)
Q Consensus 8 ~~~P~IgIv~-~~~~~~~~~~~~v~~~~l~~l~~~Ga~-----~vivp~~~~-~~~l~~~l--~~~DGlll~G 71 (369)
....+|+|+. ++. ....+-+-+.-++.+.++|+. ++.||=... +-.+.... ..+||+|-.|
T Consensus 5 ~~~~ri~IV~s~fn---~~I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGa~EiP~a~~~l~~s~~~DavIaLG 74 (141)
T PLN02404 5 GEGLRFGVVVARFN---EIITKNLLEGALETFKRYSVKEENIDVVWVPGSFEIPVVAQRLAKSGKYDAILCIG 74 (141)
T ss_pred CCCCEEEEEEecCc---HHHHHHHHHHHHHHHHHcCCCccceEEEEcCcHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 3446888885 442 234455555667788899963 344552111 11111122 3699998877
No 322
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=28.06 E-value=4.1e+02 Score=25.33 Aligned_cols=16 Identities=6% Similarity=-0.253 Sum_probs=11.3
Q ss_pred hhhcCCCCEEEECCCC
Q 017539 58 LDSFEPIHGVLLCEGE 73 (369)
Q Consensus 58 ~~~l~~~DGlll~GG~ 73 (369)
.+.+..+|.|+++-+.
T Consensus 62 eell~~~D~Vvi~tp~ 77 (271)
T PRK13302 62 DQLATHADIVVEAAPA 77 (271)
T ss_pred HHHhcCCCEEEECCCc
Confidence 3345678999999664
No 323
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=27.29 E-value=1.3e+02 Score=27.40 Aligned_cols=58 Identities=16% Similarity=0.129 Sum_probs=35.2
Q ss_pred EEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhh---hhc--CCCCEEEECCC
Q 017539 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLL---DSF--EPIHGVLLCEG 72 (369)
Q Consensus 13 IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~---~~l--~~~DGlll~GG 72 (369)
||++.... .+.+...+-+...+.+.+.|..+++.....+.+... +.+ ..+||||+.+-
T Consensus 2 Ig~i~p~~--~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~ 64 (263)
T cd06280 2 VGLIVADI--RNPFFTAVSRAVEDAAYRAGLRVILCNTDEDPEKEAMYLELMEEERVTGVIFAPT 64 (263)
T ss_pred EEEEeccc--ccccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 56665321 234555555666778888999998876554433211 111 26999999864
No 324
>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium []. Five kinase activities have been implicated in TPP synthesis, which involves joining a 4-methyl-5-(beta-hydroxyethyl)thiazole (THZ) moiety and a 4-amino-5- hydroxymethyl-2-methylpyrimidine (HMP) moiety [, ]. THZ kinase (2.7.1.50 from EC) activity is involved in the salvage synthesis of TH-P from the thiazole: 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-4-methyl-5-(2-phosphonooxyethyl)-thiazole = pyrophosphate + thiamin monophosphate Hydroxyethylthiazole kinase expression is regulated at the mRNA level by intracellular thiamin pyrophosphate [].; GO: 0004417 hydroxyethylthiazole kinase activity, 0009228 thiamine biosynthetic process; PDB: 1EKK_A 1ESQ_C 1C3Q_B 1ESJ_A 1EKQ_B 3HPD_A 3DZV_A 3NL5_A 3NL2_A 3NM1_A ....
Probab=27.24 E-value=3.4e+02 Score=25.87 Aligned_cols=53 Identities=11% Similarity=0.117 Sum_probs=31.7
Q ss_pred CCCcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCC
Q 017539 8 VILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEG 72 (369)
Q Consensus 8 ~~~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG 72 (369)
..+|.|--++++.. ...-.+.+...||.|++... +++..+.....|+++|==|
T Consensus 6 ~~~PLVh~ITN~Vt---------~n~~AN~~LA~GasPiMa~~---~~E~~e~~~~a~al~iNiG 58 (246)
T PF02110_consen 6 EKRPLVHCITNYVT---------ANDVANALLAIGASPIMAEA---PEEVEEFASIADALVINIG 58 (246)
T ss_dssp HH--EEEEE--TTT---------HHHHHHHHHHCTSEEEE--S---TTTHHHHHHCTSEEEEEST
T ss_pred hcCCeEEEccccch---------hhhHHHHHHHcCCCccccCC---HHHHHHHHHHcCEEEEECC
Confidence 34677777777632 12235678889999999864 4455555567999998655
No 325
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=27.04 E-value=1.9e+02 Score=29.53 Aligned_cols=58 Identities=10% Similarity=0.095 Sum_probs=31.7
Q ss_pred CCcEEEEecCcccCcCcccccchhHHHHHHHHC--CCEEEEEcCCC-C---hhhhhhh---cCC--CCEEEEC-CCC
Q 017539 9 ILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGY--GAVPAIVPRVS-G---VHMLLDS---FEP--IHGVLLC-EGE 73 (369)
Q Consensus 9 ~~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~--Ga~~vivp~~~-~---~~~l~~~---l~~--~DGlll~-GG~ 73 (369)
...+||||+..+. .+-...++-+... ++.+.+.|... + +..+... +.. +|-|||. ||+
T Consensus 134 ~p~~I~viTs~~g-------Aa~~D~~~~~~~r~p~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGG 203 (438)
T PRK00286 134 FPKRIGVITSPTG-------AAIRDILTVLRRRFPLVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGG 203 (438)
T ss_pred CCCEEEEEeCCcc-------HHHHHHHHHHHhcCCCCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCC
Confidence 3567999988753 2233344545543 46777777532 2 2222222 222 6889998 654
No 326
>PLN02535 glycolate oxidase
Probab=26.59 E-value=2.5e+02 Score=28.42 Aligned_cols=85 Identities=16% Similarity=0.311 Sum_probs=50.3
Q ss_pred HHHHHHHHCCCEEEEEcCCCChhhhhhhcC-CCCEEEECCCC--CCCCCCccccCCCCChhHHHHHHhhcCCCCccCchh
Q 017539 33 YHLDLIVGYGAVPAIVPRVSGVHMLLDSFE-PIHGVLLCEGE--DIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEK 109 (369)
Q Consensus 33 ~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~-~~DGlll~GG~--didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~r 109 (369)
..++++++.--.|+++.-..+.++.....+ .+|+|+++|-+ .+| ..+ .-
T Consensus 213 ~~i~~lr~~~~~PvivKgV~~~~dA~~a~~~GvD~I~vsn~GGr~~d-----~~~-----~t------------------ 264 (364)
T PLN02535 213 KDIEWLRSITNLPILIKGVLTREDAIKAVEVGVAGIIVSNHGARQLD-----YSP-----AT------------------ 264 (364)
T ss_pred HHHHHHHhccCCCEEEecCCCHHHHHHHHhcCCCEEEEeCCCcCCCC-----CCh-----HH------------------
Confidence 467888887667888875555554443333 79999999632 211 000 00
Q ss_pred hHHHHHHHHHHHHcCCCEE---EEeHHHHHH-HHHhCCeee
Q 017539 110 DSIELRLAKLCLERNIPYL---GICRGSQVL-NVACGGTLY 146 (369)
Q Consensus 110 d~~e~~li~~~~e~~iPiL---GIClG~QlL-~~a~GG~l~ 146 (369)
...+.-+..+...++||+ ||-.|..++ +.++|++..
T Consensus 265 -~~~L~ev~~av~~~ipVi~dGGIr~g~Dv~KALalGA~aV 304 (364)
T PLN02535 265 -ISVLEEVVQAVGGRVPVLLDGGVRRGTDVFKALALGAQAV 304 (364)
T ss_pred -HHHHHHHHHHHhcCCCEEeeCCCCCHHHHHHHHHcCCCEE
Confidence 001122233334469999 888898877 457788744
No 327
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=26.58 E-value=2.8e+02 Score=28.68 Aligned_cols=17 Identities=6% Similarity=-0.128 Sum_probs=11.5
Q ss_pred HHHHHHHHCCCEEEEEc
Q 017539 33 YHLDLIVGYGAVPAIVP 49 (369)
Q Consensus 33 ~~l~~l~~~Ga~~vivp 49 (369)
.-+++|.+.|+.+++.-
T Consensus 22 ~~~~~l~~~g~~v~~~d 38 (468)
T PRK04690 22 AAYRALRAHLPAQALTL 38 (468)
T ss_pred HHHHHHHHcCCEEEEEc
Confidence 34666778888777654
No 328
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=24.92 E-value=2.8e+02 Score=27.51 Aligned_cols=38 Identities=11% Similarity=0.082 Sum_probs=25.5
Q ss_pred HHHHHHHHCCCEEEEEcCCC------Chhhhhhhc-CCCCEEEEC
Q 017539 33 YHLDLIVGYGAVPAIVPRVS------GVHMLLDSF-EPIHGVLLC 70 (369)
Q Consensus 33 ~~l~~l~~~Ga~~vivp~~~------~~~~l~~~l-~~~DGlll~ 70 (369)
.|...+...|+.++.||.+. +.+.+.+.+ .....|+++
T Consensus 129 ~~~~~~~~~g~~~~~vp~~~~~~~~~d~~~l~~~~~~~~k~i~l~ 173 (396)
T PRK09147 129 IYEGAALLAGAEPYFLNCDPANNFAPDFDAVPAEVWARTQLLFVC 173 (396)
T ss_pred chHHHHHhcCCEEEEeccCccccCccCHHHHHHHHhhccEEEEEc
Confidence 35667788999999998642 234443333 367888887
No 329
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial. This family consists of repressors of the LacI family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gammaproteobacteria and does not include the GntR family TreR of Bacillus subtilis
Probab=24.56 E-value=2e+02 Score=27.27 Aligned_cols=61 Identities=15% Similarity=0.120 Sum_probs=35.8
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhc-----CCCCEEEECCC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSF-----EPIHGVLLCEG 72 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l-----~~~DGlll~GG 72 (369)
..+||++... ..+.+..-+-....+.+.+.|..+++.....+.+...+.+ ..+||+|+.+.
T Consensus 59 ~~~Ig~i~~~--~~~~~~~~~~~~i~~~~~~~gy~~~i~~~~~~~~~~~~~~~~l~~~~vdGvIi~~~ 124 (311)
T TIGR02405 59 DKVVAVIVSR--LDSPSENLAVSGMLPVFYTAGYDPIIMESQFSPQLTNEHLSVLQKRNVDGVILFGF 124 (311)
T ss_pred CCEEEEEeCC--cccccHHHHHHHHHHHHHHCCCeEEEecCCCChHHHHHHHHHHHhcCCCEEEEeCC
Confidence 3578887632 1233333344555667888999988876544433211111 26999999864
No 330
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=24.53 E-value=5.8e+02 Score=24.66 Aligned_cols=61 Identities=8% Similarity=-0.062 Sum_probs=36.2
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCC--CChhhhhhhc-----CCCCEEEECCC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRV--SGVHMLLDSF-----EPIHGVLLCEG 72 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~--~~~~~l~~~l-----~~~DGlll~GG 72 (369)
..+||++... ..+.+...+....-+.+.+.|..+++.... .+.+...+.+ ..+||||+.+.
T Consensus 46 t~~Igvv~p~--~~~~f~~~~~~gi~~aa~~~G~~l~i~~~~~~~~~~~q~~~i~~l~~~~vdgIIl~~~ 113 (343)
T PRK10936 46 AWKLCALYPH--LKDSYWLSVNYGMVEEAKRLGVDLKVLEAGGYYNLAKQQQQLEQCVAWGADAILLGAV 113 (343)
T ss_pred CeEEEEEecC--CCchHHHHHHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 3578877543 224455555556667788899988887532 2222111111 36999999864
No 331
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=24.49 E-value=1.4e+02 Score=27.44 Aligned_cols=60 Identities=12% Similarity=-0.130 Sum_probs=34.7
Q ss_pred EEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhh----hc-CCCCEEEECCC
Q 017539 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLD----SF-EPIHGVLLCEG 72 (369)
Q Consensus 12 ~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~----~l-~~~DGlll~GG 72 (369)
+|||+-......+.+...+-...-+.+.+.|..+++.... +.+...+ .. .++||||+.+.
T Consensus 1 ~Igvi~~~~~~~~~f~~~l~~gi~~~~~~~gy~~~~~~~~-~~~~~~~~~~~l~~~~vdgiii~~~ 65 (260)
T cd06304 1 KVALVYDGGGGDKSFNQSAYEGLEKAEKELGVEVKYVESV-EDADYEPNLRQLAAQGYDLIFGVGF 65 (260)
T ss_pred CEEEEecCCCCcchHHHHHHHHHHHHHHhcCceEEEEecC-CHHHHHHHHHHHHHcCCCEEEECCc
Confidence 3565543322234555555566667788889988876543 3222112 11 26999999854
No 332
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=24.28 E-value=1.2e+02 Score=26.32 Aligned_cols=11 Identities=45% Similarity=0.510 Sum_probs=9.3
Q ss_pred CCCEEEECCCC
Q 017539 63 PIHGVLLCEGE 73 (369)
Q Consensus 63 ~~DGlll~GG~ 73 (369)
.++||.|+||+
T Consensus 61 ~~~gVt~SGGE 71 (147)
T TIGR02826 61 LISCVLFLGGE 71 (147)
T ss_pred CCCEEEEechh
Confidence 35799999995
No 333
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=24.26 E-value=1.8e+02 Score=26.73 Aligned_cols=59 Identities=15% Similarity=0.041 Sum_probs=31.8
Q ss_pred EEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEc----CCCCh----hhhhhhcCCCCEEEECCC
Q 017539 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVP----RVSGV----HMLLDSFEPIHGVLLCEG 72 (369)
Q Consensus 12 ~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp----~~~~~----~~l~~~l~~~DGlll~GG 72 (369)
+||++... ..+.+...+-....+.+.+.|...+.+. ...+. +.+......+|||++.+.
T Consensus 1 ~ig~v~~~--~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~vdgiii~~~ 67 (275)
T cd06307 1 RLGFLLPK--GSNAFYRELAAALEAAAAAFPDARIRVRIHFVESFDPAALAAALLRLGARSDGVALVAP 67 (275)
T ss_pred CeEEEeCC--CCChHHHHHHHHHHHHHhhhhccCceEEEEEccCCCHHHHHHHHHHHHhcCCEEEEeCC
Confidence 35665432 2245566666666777888876544432 11122 222222227999999754
No 334
>PRK08211 putative dehydratase; Provisional
Probab=24.04 E-value=3e+02 Score=30.01 Aligned_cols=42 Identities=17% Similarity=0.075 Sum_probs=28.7
Q ss_pred CCcEEEEecCccc--------------CcCcccccchhHHHHHHHHCCCEEEEEcC
Q 017539 9 ILPRVLIVSRRSV--------------RKNKFVDFVGEYHLDLIVGYGAVPAIVPR 50 (369)
Q Consensus 9 ~~P~IgIv~~~~~--------------~~~~~~~~v~~~~l~~l~~~Ga~~vivp~ 50 (369)
.+|.|||++.++. ..+...+-+.+.--+-+.++|+.|+-.+.
T Consensus 60 ~kP~IgI~nt~~~~~~~~~~~~~~~~~pgh~hL~~l~~~vk~gi~~aGG~P~ef~t 115 (655)
T PRK08211 60 LGKQFLILSTQGGIRAADGTPIALGYHTGHWEVGLLMKAAAEEIKRNGGIPFAGYV 115 (655)
T ss_pred CCCEEEEEeCCccccccccccccCCCcCCchhHHHHHHHHHHHHHHcCCeeEEeCC
Confidence 4899999987762 12223444555556678889999987764
No 335
>PRK03094 hypothetical protein; Provisional
Probab=23.90 E-value=1.1e+02 Score=24.14 Aligned_cols=32 Identities=3% Similarity=-0.117 Sum_probs=23.7
Q ss_pred HHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCC
Q 017539 34 HLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEG 72 (369)
Q Consensus 34 ~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG 72 (369)
.-+.|++.|..+|-+....+ ..++|++|++|-
T Consensus 13 i~~~L~~~GYeVv~l~~~~~-------~~~~Da~VitG~ 44 (80)
T PRK03094 13 VQQALKQKGYEVVQLRSEQD-------AQGCDCCVVTGQ 44 (80)
T ss_pred HHHHHHHCCCEEEecCcccc-------cCCcCEEEEeCC
Confidence 34569999999998853221 237999999985
No 336
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=23.70 E-value=2.3e+02 Score=26.84 Aligned_cols=60 Identities=12% Similarity=0.021 Sum_probs=37.1
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhhc-CCCCEEEECCC
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~----l~~~l-~~~DGlll~GG 72 (369)
.+||++... ..+.+...+-....+.+.+.|..+++.....+.+. +.... ..+||||+.+.
T Consensus 57 ~~Igvi~~~--~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~ 121 (327)
T PRK10423 57 RTIGMLITA--STNPFYSELVRGVERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCT 121 (327)
T ss_pred CeEEEEeCC--CCCCcHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 578887643 22445555566667788889998887665433322 11112 26999999865
No 337
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=23.39 E-value=3.6e+02 Score=24.18 Aligned_cols=44 Identities=11% Similarity=0.034 Sum_probs=27.4
Q ss_pred ccchhHHHHHHHH-CCCEEEEEcCCCC-hhhh----------------hhhcCCCCEEEECC
Q 017539 28 DFVGEYHLDLIVG-YGAVPAIVPRVSG-VHML----------------LDSFEPIHGVLLCE 71 (369)
Q Consensus 28 ~~v~~~~l~~l~~-~Ga~~vivp~~~~-~~~l----------------~~~l~~~DGlll~G 71 (369)
..+.+...+.+.+ .|+.+.++..... +..+ .+.+..+|+|||.-
T Consensus 16 ~~lA~~ia~g~~~~~G~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gs 77 (200)
T PRK03767 16 ETMAEAVAEGAREVAGAEVTIKRVPETVPEEVAKKAGGKTDQAAPVATPDELADYDAIIFGT 77 (200)
T ss_pred HHHHHHHHHHHhhcCCcEEEEEeccccCCHHHHHhcCCCcccCCCccCHHHHHhCCEEEEEe
Confidence 4556667777887 8988877654211 1111 34456799999863
No 338
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=23.03 E-value=2.7e+02 Score=25.77 Aligned_cols=59 Identities=3% Similarity=-0.056 Sum_probs=33.0
Q ss_pred EEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCC----Chhh----hhhhc-CCCCEEEECCC
Q 017539 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS----GVHM----LLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 13 IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~----~~~~----l~~~l-~~~DGlll~GG 72 (369)
|||+.... ..+.+..-+.....+.+...|..+++.+... +.+. +.... .++||||+.+.
T Consensus 2 Igvi~~~~-~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIv~~~ 69 (280)
T cd06303 2 IAVIYPGQ-QISDYWVRNIASFTARLEELNIPYELTQFSSRPGIDHRLQSQQLNEALQSKPDYLIFTLD 69 (280)
T ss_pred eeEEecCc-cHHHHHHHHHHHHHHHHHHcCCcEEEEEeccCcccCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 56664321 1234444555566677888998888764321 1111 11111 37999999865
No 339
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=22.93 E-value=1.8e+02 Score=26.43 Aligned_cols=58 Identities=10% Similarity=-0.027 Sum_probs=34.7
Q ss_pred EEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhh----hhhc-CCCCEEEECCC
Q 017539 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHML----LDSF-EPIHGVLLCEG 72 (369)
Q Consensus 13 IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l----~~~l-~~~DGlll~GG 72 (369)
|||+... ..+.+...+-...-+.+.+.|..+++.....+.+.. .... ..+||||+.+.
T Consensus 2 igvi~~~--~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 64 (269)
T cd06275 2 IGMLVTT--STNPFFAEVVRGVEQYCYRQGYNLILCNTEGDPERQRSYLRMLAQKRVDGLLVMCS 64 (269)
T ss_pred EEEEeCC--CCcchHHHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecC
Confidence 5665432 123455555556667788899998887654443321 1111 36999999875
No 340
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=22.85 E-value=1.1e+02 Score=26.55 Aligned_cols=60 Identities=18% Similarity=0.039 Sum_probs=34.6
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCC-----EEEEEcCCCC-hhhhhhhc--CCCCEEEECC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGA-----VPAIVPRVSG-VHMLLDSF--EPIHGVLLCE 71 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga-----~~vivp~~~~-~~~l~~~l--~~~DGlll~G 71 (369)
.++|+|+..+- .....+-+-+.-++.+.+.|+ ..+.||-..+ +-.+...+ ..+||++..|
T Consensus 3 ~~ri~IV~s~~--n~~i~~~ll~~a~~~l~~~g~~~~~i~~~~VPGa~ElP~a~~~l~~~~~~Davi~lG 70 (144)
T PF00885_consen 3 GLRIAIVVSRF--NEEITDRLLEGALEELKRHGVAEENIEVIRVPGAFELPLAAKRLAESGRYDAVIALG 70 (144)
T ss_dssp TEEEEEEEEST--THHHHHHHHHHHHHHHHHTTTTGGCEEEEEESSGGGHHHHHHHHHHCSTESEEEEEE
T ss_pred CCEEEEEEEec--cHHHHHHHHHHHHHHHHHcCCCccceEEEEcCCHHHHHHHHHHHhcccCccEEEEec
Confidence 46888885431 113345555566788999997 5556663222 11111222 3599999887
No 341
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=22.39 E-value=3.6e+02 Score=27.74 Aligned_cols=57 Identities=16% Similarity=0.187 Sum_probs=31.0
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHC--CCEEEEEcCCC-C---hhhhhhh---c---CCCCEEEEC-CCC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGY--GAVPAIVPRVS-G---VHMLLDS---F---EPIHGVLLC-EGE 73 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~--Ga~~vivp~~~-~---~~~l~~~---l---~~~DGlll~-GG~ 73 (369)
.-+||||+..+. ..-...++.+.+. .+.+++.|... + ...+... + ..+|-||+. ||+
T Consensus 129 p~~i~vits~~~-------aa~~D~~~~~~~r~p~~~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~RGGG 198 (432)
T TIGR00237 129 PKRVGVITSQTG-------AALADILHILKRRDPSLKVVIYPTLVQGEGAVQSIVESIELANTKNECDVLIVGRGGG 198 (432)
T ss_pred CCEEEEEeCCcc-------HHHHHHHHHHHhhCCCceEEEecccccCccHHHHHHHHHHHhhcCCCCCEEEEecCCC
Confidence 347999988753 2233345555554 36666777431 2 1222111 1 238999998 554
No 342
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=22.37 E-value=3.1e+02 Score=28.02 Aligned_cols=45 Identities=7% Similarity=0.049 Sum_probs=26.5
Q ss_pred HHHHHHHHCCC-EEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCC
Q 017539 33 YHLDLIVGYGA-VPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDP 77 (369)
Q Consensus 33 ~~l~~l~~~Ga-~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp 77 (369)
...+.+...|. .++..+...+.+++.+.+..+|++++.+...++.
T Consensus 22 ~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~ 67 (409)
T PRK11790 22 SAVEVLRAAGYTNIEYHKGALDEEELIEAIKDAHFIGIRSRTQLTE 67 (409)
T ss_pred HHHHHHHhcCCceEEECCCCCCHHHHHHHcCCCCEEEEeCCCCCCH
Confidence 34566666676 5554443334556666777889886665434443
No 343
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=22.33 E-value=2e+02 Score=26.09 Aligned_cols=58 Identities=7% Similarity=0.033 Sum_probs=35.7
Q ss_pred EEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhc-----CCCCEEEECCC
Q 017539 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSF-----EPIHGVLLCEG 72 (369)
Q Consensus 13 IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l-----~~~DGlll~GG 72 (369)
|||+... ..+.+...+.....+++.+.|..+++.....+.+...+.+ ..+||||+.+.
T Consensus 2 I~vi~~~--~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~ 64 (265)
T cd06291 2 IGLIVPT--ISNPFFSELARAVEKELYKKGYKLILCNSDNDPEKEREYLEMLRQNQVDGIIAGTH 64 (265)
T ss_pred EEEEECC--CCChhHHHHHHHHHHHHHHCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEEecC
Confidence 5665432 1235555666666788889999988776543333222211 26999999865
No 344
>KOG2044 consensus 5'-3' exonuclease HKE1/RAT1 [Replication, recombination and repair; RNA processing and modification]
Probab=22.05 E-value=64 Score=35.76 Aligned_cols=24 Identities=38% Similarity=0.600 Sum_probs=18.8
Q ss_pred ccccccccch----------hhHHHHHHHHhhhc
Q 017539 344 VSHKILDSNF----------LIICLHYVLHNLLS 367 (369)
Q Consensus 344 ~~~~~~~~~~----------~~~~~~~~~~~~~~ 367 (369)
...+..|||. |-.||+|.+|.-|+
T Consensus 150 ~~~e~fDSNcITPGTpFM~~La~aLrYyI~~rLn 183 (931)
T KOG2044|consen 150 VKKETFDSNCITPGTPFMDRLAKALRYYIHDRLN 183 (931)
T ss_pred hhccccccCccCCCChHHHHHHHHHHHHHHHhhc
Confidence 5667788885 67899999998653
No 345
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=21.62 E-value=2.5e+02 Score=26.47 Aligned_cols=40 Identities=5% Similarity=0.035 Sum_probs=31.4
Q ss_pred HHHHHHHHCCC--EE-EEEcCCCChhhhhhhcCCCCEEEECCC
Q 017539 33 YHLDLIVGYGA--VP-AIVPRVSGVHMLLDSFEPIHGVLLCEG 72 (369)
Q Consensus 33 ~~l~~l~~~Ga--~~-vivp~~~~~~~l~~~l~~~DGlll~GG 72 (369)
..+++++++|+ .+ +.+...++.+.+..+++.+|.|++..-
T Consensus 107 ~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~vD~VLiMtV 149 (228)
T PRK08091 107 LTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQIDLIQILTL 149 (228)
T ss_pred HHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhhcCEEEEEEE
Confidence 46788999997 66 455556678888889999999999754
No 346
>PRK10342 glycerate kinase I; Provisional
Probab=21.33 E-value=1.8e+02 Score=29.67 Aligned_cols=18 Identities=22% Similarity=0.480 Sum_probs=15.5
Q ss_pred HHHHHHHHHcCCCEEEEe
Q 017539 114 LRLAKLCLERNIPYLGIC 131 (369)
Q Consensus 114 ~~li~~~~e~~iPiLGIC 131 (369)
..+++.+.+.++|+..||
T Consensus 306 ~gVa~~A~~~~vPviai~ 323 (381)
T PRK10342 306 IGVANVAKKYHKPVIGIA 323 (381)
T ss_pred HHHHHHHHHhCCCEEEEe
Confidence 367788888899999999
No 347
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=21.23 E-value=5.4e+02 Score=24.73 Aligned_cols=61 Identities=5% Similarity=-0.072 Sum_probs=34.1
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCC-EEEEEcCCCCh----hhhhhhc-CCCCEEEECCC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGA-VPAIVPRVSGV----HMLLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga-~~vivp~~~~~----~~l~~~l-~~~DGlll~GG 72 (369)
..+||++... ..+.+..-+.....+.+.+.|. .+++.....+. +.+.... ..+||||+.+.
T Consensus 24 ~~~Igvv~~~--~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 90 (330)
T PRK15395 24 DTRIGVTIYK--YDDNFMSVVRKAIEKDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLV 90 (330)
T ss_pred CceEEEEEec--CcchHHHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecc
Confidence 3567877532 2345555555566677777864 44443432222 1222222 27999999865
No 348
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=20.93 E-value=1.5e+02 Score=24.98 Aligned_cols=48 Identities=19% Similarity=0.265 Sum_probs=32.9
Q ss_pred cCcccccchhHHHHHHHHCCCEEEEEcCCC------------------ChhhhhhhcCCCCEEEEC
Q 017539 23 KNKFVDFVGEYHLDLIVGYGAVPAIVPRVS------------------GVHMLLDSFEPIHGVLLC 70 (369)
Q Consensus 23 ~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~------------------~~~~l~~~l~~~DGlll~ 70 (369)
++.....+.+...+.+.+.|+.+.++.... +.+.+.+.+...|+||+.
T Consensus 12 ~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~ 77 (152)
T PF03358_consen 12 KNSNTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFA 77 (152)
T ss_dssp TTSHHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEEe
Confidence 344456677778888988899988775432 123445556689999996
No 349
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=20.93 E-value=1.8e+02 Score=23.22 Aligned_cols=40 Identities=10% Similarity=0.104 Sum_probs=23.7
Q ss_pred HHHHHHHHCCCEEEEEcCCCC---------hhhhhhhcCCCCEEEECCC
Q 017539 33 YHLDLIVGYGAVPAIVPRVSG---------VHMLLDSFEPIHGVLLCEG 72 (369)
Q Consensus 33 ~~l~~l~~~Ga~~vivp~~~~---------~~~l~~~l~~~DGlll~GG 72 (369)
.=++.+.++||.+.++..... ...+.+.++.++-|+.+.+
T Consensus 21 ~k~~~Ll~~gA~v~vis~~~~~~~~~i~~~~~~~~~~l~~~~lV~~at~ 69 (103)
T PF13241_consen 21 RKARLLLEAGAKVTVISPEIEFSEGLIQLIRREFEEDLDGADLVFAATD 69 (103)
T ss_dssp HHHHHHCCCTBEEEEEESSEHHHHTSCEEEESS-GGGCTTESEEEE-SS
T ss_pred HHHHHHHhCCCEEEEECCchhhhhhHHHHHhhhHHHHHhhheEEEecCC
Confidence 446678889999988865420 0122344566776776665
No 350
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=20.81 E-value=1.3e+02 Score=23.67 Aligned_cols=33 Identities=3% Similarity=0.069 Sum_probs=24.5
Q ss_pred HHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCC
Q 017539 34 HLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGE 73 (369)
Q Consensus 34 ~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~ 73 (369)
.-++|++.|..++.+.... .+.++|++|++|-.
T Consensus 13 v~~~L~~~GyeVv~l~~~~-------~~~~~daiVvtG~~ 45 (80)
T PF03698_consen 13 VKEALREKGYEVVDLENEQ-------DLQNVDAIVVTGQD 45 (80)
T ss_pred HHHHHHHCCCEEEecCCcc-------ccCCcCEEEEECCC
Confidence 3457999999999875322 23479999999964
No 351
>PRK05839 hypothetical protein; Provisional
Probab=20.53 E-value=3.8e+02 Score=26.41 Aligned_cols=38 Identities=11% Similarity=0.058 Sum_probs=24.8
Q ss_pred HHHHHHHHCCCEEEEEcCCCC----hhhhhhhcCCCCEEEEC
Q 017539 33 YHLDLIVGYGAVPAIVPRVSG----VHMLLDSFEPIHGVLLC 70 (369)
Q Consensus 33 ~~l~~l~~~Ga~~vivp~~~~----~~~l~~~l~~~DGlll~ 70 (369)
.|...+...|+.++.+|.+.+ .+.....++....|+++
T Consensus 121 ~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~~~~~~~k~v~i~ 162 (374)
T PRK05839 121 IYEGAAIASRAKVLLMPLTKENDFTPSLNEKELQEVDLVILN 162 (374)
T ss_pred hhHHHHHhcCCEEEEeecccccCCcCCcchhhhccccEEEEe
Confidence 367778889999999986422 11111224568888887
No 352
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=20.51 E-value=2.1e+02 Score=25.78 Aligned_cols=58 Identities=10% Similarity=0.074 Sum_probs=35.3
Q ss_pred EEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhhc-CCCCEEEECCC
Q 017539 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 13 IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~----l~~~l-~~~DGlll~GG 72 (369)
||++... ..+.+..-+.+..-+.+...|..+++.+...+.+. +.... ..+||||+.+.
T Consensus 2 i~~i~~~--~~~~~~~~i~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 64 (260)
T cd06286 2 IGVVLPY--INHPYFSQLVDGIEKAALKHGYKVVLLQTNYDKEKELEYLELLKTKQVDGLILCSR 64 (260)
T ss_pred EEEEeCC--CCCchHHHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeCC
Confidence 5555432 22455555556667778889999988776544331 11111 26999999865
No 353
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.36 E-value=2.2e+02 Score=25.75 Aligned_cols=58 Identities=12% Similarity=0.029 Sum_probs=34.9
Q ss_pred EEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhh----hhhc-CCCCEEEECCC
Q 017539 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHML----LDSF-EPIHGVLLCEG 72 (369)
Q Consensus 13 IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l----~~~l-~~~DGlll~GG 72 (369)
|||+-.. ..+.+...+-....+.+.+.|..+++.....+.+.. .... ..+|||++.+.
T Consensus 2 i~vi~~~--~~~~~~~~~~~gi~~~~~~~gy~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~ 64 (265)
T cd06290 2 IGVLTQD--FASPFYGRILKGMERGLNGSGYSPIIATGHWNQSRELEALELLKSRRVDALILLGG 64 (265)
T ss_pred EEEEECC--CCCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 5555432 124455555555667788999999887655443221 1222 26999999865
No 354
>PLN02623 pyruvate kinase
Probab=20.20 E-value=1.7e+02 Score=31.47 Aligned_cols=69 Identities=14% Similarity=0.282 Sum_probs=43.1
Q ss_pred HHHHCCCEEEEEcCCC---ChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhHHH
Q 017539 37 LIVGYGAVPAIVPRVS---GVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIE 113 (369)
Q Consensus 37 ~l~~~Ga~~vivp~~~---~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e 113 (369)
.+..+|..+.++.... ..+.++++++.+|||++.-| |+.-+. + -+++ ....
T Consensus 312 ~l~~~~~~~~iiakIEt~eaVeNldeIl~g~DgImIgrg-DLgvel-g-------~~~v-----------------~~~q 365 (581)
T PLN02623 312 YLKSCNADIHVIVKIESADSIPNLHSIITASDGAMVARG-DLGAEL-P-------IEEV-----------------PLLQ 365 (581)
T ss_pred HHHHcCCcceEEEEECCHHHHHhHHHHHHhCCEEEECcc-hhhhhc-C-------cHHH-----------------HHHH
Confidence 4555676665555433 35667777889999999877 222111 0 0111 1344
Q ss_pred HHHHHHHHHcCCCEEEEe
Q 017539 114 LRLAKLCLERNIPYLGIC 131 (369)
Q Consensus 114 ~~li~~~~e~~iPiLGIC 131 (369)
..+++.|.+.++|+...+
T Consensus 366 k~Ii~~~~~~gKpvivaT 383 (581)
T PLN02623 366 EEIIRRCRSMGKPVIVAT 383 (581)
T ss_pred HHHHHHHHHhCCCEEEEC
Confidence 578899999999997555
No 355
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=20.16 E-value=4.7e+02 Score=21.55 Aligned_cols=41 Identities=7% Similarity=0.162 Sum_probs=30.3
Q ss_pred hhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCC
Q 017539 31 GEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGE 73 (369)
Q Consensus 31 ~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~ 73 (369)
.+...+.|++ |..+.+.. ..+.+++.+.++.+|+|+..+++
T Consensus 8 ~~~~~~~l~~-~~~v~~~~-~~~~~~~~~~l~~~d~ii~~~~~ 48 (133)
T PF00389_consen 8 PDEEIERLEE-GFEVEFCD-SPSEEELAERLKDADAIIVGSGT 48 (133)
T ss_dssp SHHHHHHHHH-TSEEEEES-SSSHHHHHHHHTTESEEEESTTS
T ss_pred CHHHHHHHHC-CceEEEeC-CCCHHHHHHHhCCCeEEEEcCCC
Confidence 4556777888 77555555 55677788888899999987764
No 356
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=20.10 E-value=5e+02 Score=26.19 Aligned_cols=83 Identities=20% Similarity=0.226 Sum_probs=48.1
Q ss_pred HHHHHHHHCCCEEEEEcCCCChhhhhhhcC-CCCEEEECCCC--CCCCCCccccCCCCChhHHHHHHhhcCCCCccCchh
Q 017539 33 YHLDLIVGYGAVPAIVPRVSGVHMLLDSFE-PIHGVLLCEGE--DIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEK 109 (369)
Q Consensus 33 ~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~-~~DGlll~GG~--didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~r 109 (369)
..+++|++.=-.|+++--..+.++.....+ .+|||++++.+ .++ ..+.
T Consensus 226 ~~i~~ir~~~~~pviiKgV~~~eda~~a~~~G~d~I~VSnhGGrqld-----~~~~------------------------ 276 (361)
T cd04736 226 QDLRWLRDLWPHKLLVKGIVTAEDAKRCIELGADGVILSNHGGRQLD-----DAIA------------------------ 276 (361)
T ss_pred HHHHHHHHhCCCCEEEecCCCHHHHHHHHHCCcCEEEECCCCcCCCc-----CCcc------------------------
Confidence 378888885444676665555555444333 79999999632 221 1110
Q ss_pred hHHHHHHHHHHHHcCCCEE---EEeHHHHHH-HHHhCCeee
Q 017539 110 DSIELRLAKLCLERNIPYL---GICRGSQVL-NVACGGTLY 146 (369)
Q Consensus 110 d~~e~~li~~~~e~~iPiL---GIClG~QlL-~~a~GG~l~ 146 (369)
....+.-++.+ .++||+ ||..|.-++ +.++|++..
T Consensus 277 ~~~~L~ei~~~--~~~~vi~dGGIr~g~Dv~KALaLGA~aV 315 (361)
T cd04736 277 PIEALAEIVAA--TYKPVLIDSGIRRGSDIVKALALGANAV 315 (361)
T ss_pred HHHHHHHHHHH--hCCeEEEeCCCCCHHHHHHHHHcCCCEE
Confidence 00011122222 258998 899998887 457787744
Done!