Query 017539
Match_columns 369
No_of_seqs 271 out of 1837
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 16:03:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017539.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017539hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fij_A LIN1909 protein; 11172J 100.0 2.2E-44 7.4E-49 340.1 21.4 236 9-284 3-244 (254)
2 1l9x_A Gamma-glutamyl hydrolas 100.0 1.2E-34 4E-39 281.8 9.7 226 1-282 21-278 (315)
3 2a9v_A GMP synthase; structura 100.0 2.8E-32 9.6E-37 250.7 19.0 192 9-285 12-204 (212)
4 1qdl_B Protein (anthranilate s 100.0 1.1E-30 3.8E-35 236.6 22.0 186 12-278 3-193 (195)
5 1wl8_A GMP synthase [glutamine 100.0 1.7E-30 5.9E-35 233.7 20.0 186 12-281 2-187 (189)
6 2vpi_A GMP synthase; guanine m 100.0 3.2E-31 1.1E-35 244.9 15.4 187 10-281 24-211 (218)
7 1a9x_B Carbamoyl phosphate syn 100.0 2E-29 7E-34 250.0 22.9 173 32-284 202-377 (379)
8 1i1q_B Anthranilate synthase c 100.0 2E-29 6.9E-34 227.6 20.3 188 11-281 1-190 (192)
9 1gpm_A GMP synthetase, XMP ami 100.0 4.4E-29 1.5E-33 257.9 17.9 192 10-278 7-199 (525)
10 2ywb_A GMP synthase [glutamine 100.0 4E-29 1.4E-33 257.0 12.9 183 13-280 2-184 (503)
11 1o1y_A Conserved hypothetical 100.0 6.6E-28 2.3E-32 225.4 18.9 176 33-283 28-203 (239)
12 3tqi_A GMP synthase [glutamine 100.0 1.3E-28 4.3E-33 254.5 15.3 191 11-278 11-202 (527)
13 3nva_A CTP synthase; rossman f 100.0 2.6E-28 8.7E-33 248.5 17.2 221 11-281 294-533 (535)
14 2w7t_A CTP synthetase, putativ 100.0 7.9E-29 2.7E-33 236.2 12.0 220 9-283 7-257 (273)
15 3uow_A GMP synthetase; structu 99.9 2.7E-27 9.2E-32 245.9 19.2 205 10-278 7-227 (556)
16 1vco_A CTP synthetase; tetrame 99.9 9.8E-28 3.4E-32 247.4 13.1 227 10-285 300-548 (550)
17 2v4u_A CTP synthase 2; pyrimid 99.9 1.4E-27 4.8E-32 229.3 12.6 218 10-286 25-280 (289)
18 2vxo_A GMP synthase [glutamine 99.9 3.3E-27 1.1E-31 250.5 14.5 167 34-277 45-211 (697)
19 3l7n_A Putative uncharacterize 99.9 7.9E-27 2.7E-31 217.5 15.3 178 33-283 16-197 (236)
20 1s1m_A CTP synthase; CTP synth 99.9 7.3E-27 2.5E-31 240.7 16.1 221 10-286 289-542 (545)
21 3d54_D Phosphoribosylformylgly 99.9 7E-26 2.4E-30 206.4 18.8 202 10-281 2-212 (213)
22 3m3p_A Glutamine amido transfe 99.9 9.4E-26 3.2E-30 212.5 18.7 164 32-257 18-181 (250)
23 3r75_A Anthranilate/para-amino 99.9 3.9E-26 1.4E-30 240.4 16.7 190 11-283 447-636 (645)
24 2ywj_A Glutamine amidotransfer 99.9 6.2E-26 2.1E-30 203.3 14.4 182 12-281 2-184 (186)
25 1q7r_A Predicted amidotransfer 99.9 1.6E-25 5.4E-30 206.3 14.1 189 10-284 23-213 (219)
26 2ywd_A Glutamine amidotransfer 99.9 3.5E-25 1.2E-29 198.7 12.4 185 10-281 2-190 (191)
27 2nv0_A Glutamine amidotransfer 99.9 9.5E-25 3.2E-29 197.1 15.1 192 11-286 2-193 (196)
28 4gud_A Imidazole glycerol phos 99.9 8E-26 2.7E-30 206.3 5.5 200 12-282 4-206 (211)
29 1gpw_B Amidotransferase HISH; 99.9 1.6E-25 5.3E-30 203.1 5.1 187 12-282 2-199 (201)
30 2iss_D Glutamine amidotransfer 99.9 9E-24 3.1E-28 193.0 12.5 188 10-280 20-207 (208)
31 2abw_A PDX2 protein, glutamina 99.9 3.2E-23 1.1E-27 191.5 13.4 201 10-286 3-219 (227)
32 1ka9_H Imidazole glycerol phos 99.9 9E-24 3.1E-28 191.6 7.3 188 11-280 3-200 (200)
33 1jvn_A Glutamine, bifunctional 99.9 3.4E-24 1.2E-28 222.6 3.1 200 9-280 3-215 (555)
34 2vdj_A Homoserine O-succinyltr 99.7 6.3E-16 2.1E-20 148.9 17.5 137 62-258 98-241 (301)
35 2h2w_A Homoserine O-succinyltr 99.7 7.2E-16 2.5E-20 148.9 17.8 137 62-258 110-252 (312)
36 3ugj_A Phosphoribosylformylgly 99.2 2.7E-10 9.1E-15 127.6 18.1 215 9-280 1046-1302(1303)
37 3l4e_A Uncharacterized peptida 98.4 2.5E-07 8.5E-12 84.2 6.2 101 10-139 27-128 (206)
38 1fy2_A Aspartyl dipeptidase; s 98.3 2.2E-07 7.5E-12 85.8 4.1 100 10-141 31-130 (229)
39 1oi4_A Hypothetical protein YH 97.7 7.8E-05 2.7E-09 66.3 8.6 98 9-140 22-134 (193)
40 4hcj_A THIJ/PFPI domain protei 97.4 0.00059 2E-08 60.2 9.1 103 4-140 2-117 (177)
41 1vhq_A Enhancing lycopene bios 97.1 0.0011 3.7E-08 60.6 7.7 31 112-142 121-151 (232)
42 2rk3_A Protein DJ-1; parkinson 96.8 0.0025 8.4E-08 56.5 7.5 79 34-140 22-115 (197)
43 3l18_A Intracellular protease 96.8 0.0029 9.9E-08 54.4 7.7 96 11-140 3-111 (168)
44 3l3b_A ES1 family protein; ssg 96.8 0.0048 1.6E-07 57.1 9.4 29 113-141 140-168 (242)
45 2vrn_A Protease I, DR1199; cys 96.8 0.0036 1.2E-07 54.9 8.1 96 11-140 10-124 (190)
46 2fex_A Conserved hypothetical 96.7 0.0051 1.7E-07 54.0 8.2 95 11-140 2-110 (188)
47 4e08_A DJ-1 beta; flavodoxin-l 96.6 0.007 2.4E-07 53.2 8.3 79 34-140 24-116 (190)
48 3f5d_A Protein YDEA; unknow pr 96.5 0.015 5.2E-07 52.2 10.0 95 10-140 3-109 (206)
49 3efe_A THIJ/PFPI family protei 96.3 0.023 7.7E-07 51.0 10.4 28 113-140 94-121 (212)
50 3n7t_A Macrophage binding prot 96.2 0.0094 3.2E-07 55.3 7.6 29 112-140 126-154 (247)
51 2ab0_A YAJL; DJ-1/THIJ superfa 96.2 0.004 1.4E-07 55.6 4.5 79 34-140 21-116 (205)
52 3en0_A Cyanophycinase; serine 95.9 0.004 1.4E-07 59.3 3.2 99 10-139 56-160 (291)
53 3ej6_A Catalase-3; heme, hydro 95.8 0.049 1.7E-06 57.3 11.2 102 12-140 539-646 (688)
54 3kkl_A Probable chaperone prot 95.7 0.023 7.8E-07 52.5 7.7 29 112-140 119-147 (244)
55 3er6_A Putative transcriptiona 95.6 0.04 1.4E-06 49.3 8.7 29 112-140 96-124 (209)
56 3gra_A Transcriptional regulat 95.6 0.028 9.7E-07 50.0 7.6 27 114-140 91-117 (202)
57 3uk7_A Class I glutamine amido 95.6 0.038 1.3E-06 54.1 9.2 97 10-140 12-137 (396)
58 3fse_A Two-domain protein cont 95.5 0.022 7.7E-07 55.8 7.1 97 10-140 10-121 (365)
59 3ttv_A Catalase HPII; heme ori 95.5 0.021 7.1E-07 60.6 7.1 95 11-140 601-708 (753)
60 3cne_A Putative protease I; st 95.4 0.012 4E-07 50.9 4.1 29 112-140 92-120 (175)
61 3uk7_A Class I glutamine amido 95.4 0.038 1.3E-06 54.1 8.2 98 9-140 204-330 (396)
62 3ot1_A 4-methyl-5(B-hydroxyeth 95.0 0.028 9.7E-07 50.2 5.5 98 10-140 9-121 (208)
63 1rw7_A YDR533CP; alpha-beta sa 94.8 0.021 7.1E-07 52.4 4.1 29 112-140 119-147 (243)
64 3ewn_A THIJ/PFPI family protei 94.7 0.072 2.5E-06 49.4 7.6 28 113-140 106-133 (253)
65 1u9c_A APC35852; structural ge 94.0 0.019 6.5E-07 51.6 2.0 28 113-140 111-138 (224)
66 2iuf_A Catalase; oxidoreductas 93.7 0.12 4E-06 54.6 7.5 113 11-140 530-648 (688)
67 1sy7_A Catalase 1; heme oxidat 93.6 0.18 6.2E-06 53.5 8.7 99 11-143 535-647 (715)
68 3noq_A THIJ/PFPI family protei 92.9 0.073 2.5E-06 48.4 4.1 28 113-140 86-113 (231)
69 1n57_A Chaperone HSP31, protei 92.3 0.068 2.3E-06 50.5 3.1 28 113-140 167-194 (291)
70 3mgk_A Intracellular protease/ 91.5 0.11 3.6E-06 46.6 3.2 28 113-140 86-113 (211)
71 3rfq_A Pterin-4-alpha-carbinol 91.5 0.42 1.4E-05 42.2 7.0 68 9-77 29-103 (185)
72 2pjk_A 178AA long hypothetical 91.0 0.49 1.7E-05 41.4 6.9 69 9-77 14-95 (178)
73 1mkz_A Molybdenum cofactor bio 90.6 0.63 2.2E-05 40.3 7.2 75 1-76 1-82 (172)
74 2an1_A Putative kinase; struct 87.4 0.51 1.7E-05 44.0 4.6 86 8-133 3-96 (292)
75 3pzy_A MOG; ssgcid, seattle st 87.2 0.45 1.5E-05 41.1 3.8 66 8-76 5-79 (164)
76 1y5e_A Molybdenum cofactor bio 86.7 1.1 3.8E-05 38.6 6.1 67 9-76 12-85 (169)
77 3kbq_A Protein TA0487; structu 86.2 0.67 2.3E-05 40.5 4.4 67 9-75 2-74 (172)
78 2pbq_A Molybdenum cofactor bio 85.8 0.64 2.2E-05 40.5 4.1 70 6-76 1-81 (178)
79 3l49_A ABC sugar (ribose) tran 85.3 3.8 0.00013 36.8 9.3 65 6-72 1-70 (291)
80 1jlj_A Gephyrin; globular alph 84.8 0.95 3.2E-05 39.9 4.7 76 1-76 1-91 (189)
81 2is8_A Molybdopterin biosynthe 82.5 0.91 3.1E-05 38.9 3.5 67 10-76 1-75 (164)
82 3tb6_A Arabinose metabolism tr 82.5 7.4 0.00025 34.8 10.0 62 9-72 14-80 (298)
83 1u0t_A Inorganic polyphosphate 82.2 3 0.0001 39.3 7.4 83 11-133 5-108 (307)
84 1z0s_A Probable inorganic poly 77.9 2.9 9.9E-05 39.2 5.6 47 12-72 31-77 (278)
85 3bhn_A THIJ/PFPI domain protei 77.1 0.6 2E-05 42.6 0.6 19 122-140 109-128 (236)
86 1di6_A MOGA, molybdenum cofact 77.0 1.9 6.6E-05 38.2 3.9 66 10-77 3-80 (195)
87 3l6u_A ABC-type sugar transpor 76.9 13 0.00044 33.2 9.7 61 10-72 8-73 (293)
88 3gv0_A Transcriptional regulat 76.6 8.3 0.00028 34.6 8.3 63 10-72 8-75 (288)
89 3h75_A Periplasmic sugar-bindi 75.8 3.2 0.00011 38.7 5.3 61 10-71 3-70 (350)
90 4gdh_A DJ-1, uncharacterized p 74.9 1.5 5.1E-05 38.4 2.6 24 114-137 96-120 (194)
91 2g2c_A Putative molybdenum cof 74.7 1.9 6.6E-05 36.9 3.2 68 9-76 4-82 (167)
92 1g8l_A Molybdopterin biosynthe 74.6 3.4 0.00012 40.8 5.4 67 10-76 177-256 (411)
93 3o74_A Fructose transport syst 74.2 13 0.00043 32.8 8.7 60 11-72 3-67 (272)
94 2ioj_A Hypothetical protein AF 74.2 5.7 0.0002 32.6 5.9 70 32-139 42-113 (139)
95 1wu2_A MOEA protein, molybdopt 73.8 2.9 9.8E-05 41.2 4.6 68 10-77 182-264 (396)
96 3k4h_A Putative transcriptiona 73.8 14 0.00049 32.8 9.1 63 10-72 8-78 (292)
97 1uz5_A MOEA protein, 402AA lon 73.1 2.4 8.2E-05 41.8 3.8 67 10-76 180-259 (402)
98 3cs3_A Sugar-binding transcrip 72.8 10 0.00035 33.8 7.8 59 10-72 8-66 (277)
99 3iwt_A 178AA long hypothetical 72.6 8.4 0.00029 32.9 6.9 66 10-75 15-93 (178)
100 1uuy_A CNX1, molybdopterin bio 72.2 4.7 0.00016 34.4 5.1 68 8-75 3-83 (167)
101 3ksm_A ABC-type sugar transpor 71.5 18 0.0006 31.8 9.0 60 11-72 1-68 (276)
102 3jy6_A Transcriptional regulat 71.2 14 0.00047 32.8 8.3 64 7-72 4-72 (276)
103 3rot_A ABC sugar transporter, 70.6 20 0.00069 32.1 9.4 61 10-72 3-70 (297)
104 3m9w_A D-xylose-binding peripl 70.4 18 0.00062 32.7 9.1 61 10-72 2-67 (313)
105 3hcw_A Maltose operon transcri 70.2 14 0.00049 33.2 8.3 64 9-72 6-77 (295)
106 3uug_A Multiple sugar-binding 69.6 16 0.00056 33.2 8.6 61 10-72 3-68 (330)
107 2fn9_A Ribose ABC transporter, 69.0 27 0.00092 31.0 9.8 60 11-72 3-67 (290)
108 3egc_A Putative ribose operon 67.8 15 0.0005 32.9 7.7 62 10-73 8-74 (291)
109 3dbi_A Sugar-binding transcrip 67.7 19 0.00067 33.0 8.8 63 10-72 61-128 (338)
110 2fts_A Gephyrin; gephyrin, neu 66.8 4.2 0.00014 40.2 4.0 66 10-75 181-259 (419)
111 2rjo_A Twin-arginine transloca 65.4 16 0.00055 33.5 7.7 65 6-72 1-72 (332)
112 3brq_A HTH-type transcriptiona 65.4 25 0.00085 31.1 8.7 63 10-72 19-86 (296)
113 3brs_A Periplasmic binding pro 65.3 13 0.00044 33.1 6.8 66 7-72 2-74 (289)
114 3h5o_A Transcriptional regulat 63.9 38 0.0013 31.0 10.0 61 10-72 62-127 (339)
115 3g1w_A Sugar ABC transporter; 63.7 33 0.0011 30.6 9.3 60 11-72 5-70 (305)
116 2fep_A Catabolite control prot 63.4 29 0.00098 31.0 8.8 61 10-72 16-81 (289)
117 2rgy_A Transcriptional regulat 63.1 28 0.00097 31.0 8.7 61 10-72 8-76 (290)
118 2x7x_A Sensor protein; transfe 62.6 28 0.00095 31.8 8.7 60 10-72 6-71 (325)
119 3bbl_A Regulatory protein of L 62.3 35 0.0012 30.4 9.1 62 11-72 5-73 (287)
120 3kke_A LACI family transcripti 62.1 29 0.00099 31.2 8.6 61 10-72 15-80 (303)
121 3huu_A Transcription regulator 62.0 20 0.00068 32.3 7.5 64 9-72 21-92 (305)
122 2dri_A D-ribose-binding protei 61.7 29 0.001 30.6 8.5 61 10-72 1-66 (271)
123 3c3k_A Alanine racemase; struc 60.4 35 0.0012 30.3 8.8 61 10-72 8-73 (285)
124 2ioy_A Periplasmic sugar-bindi 59.0 38 0.0013 30.0 8.8 60 11-72 2-66 (283)
125 2qv7_A Diacylglycerol kinase D 58.9 21 0.00072 33.6 7.3 62 10-72 24-89 (337)
126 2iks_A DNA-binding transcripti 58.4 35 0.0012 30.4 8.5 61 10-72 20-85 (293)
127 2vk2_A YTFQ, ABC transporter p 58.3 39 0.0013 30.3 8.8 60 11-72 3-67 (306)
128 3qk7_A Transcriptional regulat 56.3 51 0.0017 29.4 9.2 63 10-72 6-74 (294)
129 3dhn_A NAD-dependent epimerase 56.2 66 0.0023 27.3 9.6 56 10-73 4-77 (227)
130 2fvy_A D-galactose-binding per 55.9 36 0.0012 30.3 8.1 60 11-72 3-68 (309)
131 3ff4_A Uncharacterized protein 55.9 27 0.00091 28.2 6.4 91 31-136 20-117 (122)
132 3e3m_A Transcriptional regulat 55.6 36 0.0012 31.5 8.3 61 10-72 70-135 (355)
133 3kjx_A Transcriptional regulat 55.5 49 0.0017 30.3 9.1 61 10-72 68-133 (344)
134 3e61_A Putative transcriptiona 54.7 20 0.00067 31.7 6.0 59 11-71 9-72 (277)
135 1vi6_A 30S ribosomal protein S 54.6 36 0.0012 30.3 7.5 17 115-131 129-145 (208)
136 2h3h_A Sugar ABC transporter, 54.4 60 0.0021 29.2 9.4 59 11-72 2-66 (313)
137 2o20_A Catabolite control prot 54.2 57 0.0019 29.7 9.3 61 10-72 63-128 (332)
138 8abp_A L-arabinose-binding pro 53.8 25 0.00085 31.4 6.6 59 11-72 3-66 (306)
139 2bon_A Lipid kinase; DAG kinas 53.3 28 0.00094 32.7 7.0 63 5-72 25-91 (332)
140 3d8u_A PURR transcriptional re 52.8 26 0.00088 30.8 6.4 60 11-72 4-68 (275)
141 3o1i_D Periplasmic protein TOR 52.2 32 0.0011 30.5 7.1 61 10-72 5-72 (304)
142 3pfn_A NAD kinase; structural 51.8 9.8 0.00033 37.0 3.6 34 11-47 39-72 (365)
143 4fe7_A Xylose operon regulator 51.5 24 0.00083 33.7 6.4 60 7-69 22-82 (412)
144 1jx6_A LUXP protein; protein-l 47.9 91 0.0031 28.2 9.6 61 10-71 43-112 (342)
145 3clk_A Transcription regulator 46.1 32 0.0011 30.6 6.0 61 10-72 8-74 (290)
146 3bil_A Probable LACI-family tr 46.0 47 0.0016 30.7 7.4 60 11-72 67-131 (348)
147 4e5v_A Putative THUA-like prot 45.9 1.1E+02 0.0038 28.1 9.8 89 10-134 4-96 (281)
148 3i6i_A Putative leucoanthocyan 45.8 30 0.001 32.0 5.9 56 10-73 10-93 (346)
149 3k9c_A Transcriptional regulat 44.8 37 0.0013 30.3 6.2 60 10-72 12-75 (289)
150 3u5c_A 40S ribosomal protein S 44.5 52 0.0018 30.2 7.1 17 115-131 131-147 (252)
151 1gud_A ALBP, D-allose-binding 44.2 67 0.0023 28.5 7.9 59 12-72 3-68 (288)
152 3g85_A Transcriptional regulat 44.1 23 0.0008 31.4 4.7 62 10-72 11-77 (289)
153 2i2c_A Probable inorganic poly 43.7 22 0.00076 32.5 4.5 43 12-72 2-44 (272)
154 1tjy_A Sugar transport protein 43.4 69 0.0023 29.0 8.0 60 11-72 4-69 (316)
155 2q62_A ARSH; alpha/beta, flavo 43.3 36 0.0012 30.8 5.8 61 9-70 33-105 (247)
156 3bch_A 40S ribosomal protein S 42.4 47 0.0016 30.5 6.4 17 115-131 165-181 (253)
157 3s40_A Diacylglycerol kinase; 41.5 62 0.0021 29.8 7.3 62 10-72 8-72 (304)
158 3rht_A (gatase1)-like protein; 41.1 21 0.00071 32.9 3.9 57 8-71 2-58 (259)
159 1dbq_A Purine repressor; trans 41.0 72 0.0024 28.0 7.5 61 10-72 7-72 (289)
160 2hsg_A Glucose-resistance amyl 40.2 53 0.0018 29.9 6.6 61 10-72 60-125 (332)
161 3qvo_A NMRA family protein; st 40.2 39 0.0013 29.4 5.4 59 6-72 19-97 (236)
162 3dqp_A Oxidoreductase YLBE; al 39.4 1.7E+02 0.0058 24.6 9.9 46 28-73 10-73 (219)
163 4eg0_A D-alanine--D-alanine li 38.6 77 0.0026 29.0 7.5 59 10-70 13-72 (317)
164 2zkq_b 40S ribosomal protein S 38.6 57 0.0019 30.7 6.4 17 115-131 132-148 (295)
165 3d02_A Putative LACI-type tran 38.3 1.1E+02 0.0039 26.8 8.5 60 11-72 5-70 (303)
166 3afo_A NADH kinase POS5; alpha 36.7 11 0.00038 36.9 1.3 35 10-47 41-77 (388)
167 3miz_A Putative transcriptiona 35.7 61 0.0021 28.9 6.2 62 9-72 12-79 (301)
168 3iz6_A 40S ribosomal protein S 35.1 69 0.0024 30.2 6.4 17 115-131 136-152 (305)
169 1ehs_A STB, heat-stable entero 34.8 5.5 0.00019 26.1 -0.8 17 126-142 31-47 (48)
170 1t0b_A THUA-like protein; treh 34.4 75 0.0026 28.7 6.5 104 10-144 7-119 (252)
171 3rpe_A MDAB, modulator of drug 34.0 31 0.0011 30.7 3.8 61 10-70 25-90 (218)
172 2c5a_A GDP-mannose-3', 5'-epim 33.6 1.3E+02 0.0044 28.1 8.3 62 4-73 23-103 (379)
173 1qyd_A Pinoresinol-lariciresin 33.3 2.3E+02 0.008 25.0 9.8 21 53-73 66-86 (313)
174 3sxp_A ADP-L-glycero-D-mannohe 33.1 1.6E+02 0.0055 27.0 8.8 65 1-73 1-100 (362)
175 3dzv_A 4-methyl-5-(beta-hydrox 32.7 2E+02 0.007 26.3 9.3 51 10-72 17-67 (273)
176 2qip_A Protein of unknown func 32.6 95 0.0032 25.9 6.5 62 32-132 64-141 (165)
177 3gbv_A Putative LACI-family tr 32.5 1.1E+02 0.0038 26.8 7.3 62 10-72 8-78 (304)
178 2h0a_A TTHA0807, transcription 32.4 32 0.0011 30.1 3.6 58 13-72 2-64 (276)
179 3hs3_A Ribose operon repressor 31.2 75 0.0026 27.9 5.9 61 9-71 9-75 (277)
180 2amj_A Modulator of drug activ 30.9 55 0.0019 28.4 4.8 59 12-70 14-77 (204)
181 1ydg_A Trp repressor binding p 29.9 58 0.002 27.8 4.8 56 11-70 7-85 (211)
182 2qu7_A Putative transcriptiona 29.8 48 0.0016 29.3 4.3 59 11-72 9-72 (288)
183 2fzv_A Putative arsenical resi 28.6 72 0.0024 29.5 5.4 60 10-70 58-130 (279)
184 2hqb_A Transcriptional activat 28.6 1.1E+02 0.0036 27.7 6.6 62 11-72 6-72 (296)
185 4id9_A Short-chain dehydrogena 27.6 1E+02 0.0034 28.1 6.3 56 10-73 19-87 (347)
186 2lpm_A Two-component response 26.7 82 0.0028 25.1 4.8 56 4-69 2-59 (123)
187 3e18_A Oxidoreductase; dehydro 26.6 83 0.0028 29.5 5.6 10 63-72 65-74 (359)
188 2qh8_A Uncharacterized protein 26.1 91 0.0031 27.9 5.6 61 9-72 7-78 (302)
189 1xq6_A Unknown protein; struct 25.8 2E+02 0.0067 24.4 7.6 56 10-73 4-79 (253)
190 2o23_A HADH2 protein; HSD17B10 25.8 1.7E+02 0.0059 25.3 7.3 42 1-50 3-44 (265)
191 1byk_A Protein (trehalose oper 25.6 75 0.0026 27.4 4.8 60 11-72 3-67 (255)
192 3v5n_A Oxidoreductase; structu 25.2 1.5E+02 0.0051 28.4 7.3 31 10-46 37-68 (417)
193 3m2p_A UDP-N-acetylglucosamine 24.9 1.9E+02 0.0065 25.8 7.6 55 11-73 3-72 (311)
194 2r47_A Uncharacterized protein 24.7 27 0.00091 29.8 1.4 23 115-139 108-130 (157)
195 3lft_A Uncharacterized protein 24.6 95 0.0033 27.7 5.4 60 10-72 2-71 (295)
196 1hdo_A Biliverdin IX beta redu 23.9 2.3E+02 0.008 23.0 7.5 55 11-73 4-77 (206)
197 3u7r_A NADPH-dependent FMN red 23.6 1.2E+02 0.0042 26.0 5.7 59 10-70 2-74 (190)
198 3o9z_A Lipopolysaccaride biosy 23.4 1.3E+02 0.0046 27.6 6.3 31 10-48 3-33 (312)
199 3e9m_A Oxidoreductase, GFO/IDH 23.0 1.6E+02 0.0054 27.1 6.7 32 6-46 1-33 (330)
200 3re1_A Uroporphyrinogen-III sy 22.9 93 0.0032 27.9 5.0 58 6-72 10-75 (269)
201 3st7_A Capsular polysaccharide 22.8 87 0.003 29.0 4.9 54 12-73 2-56 (369)
202 3c1o_A Eugenol synthase; pheny 22.8 1.7E+02 0.0059 26.1 6.9 20 53-72 67-86 (321)
203 1qpz_A PURA, protein (purine n 22.8 1.3E+02 0.0045 27.2 6.1 61 10-72 58-123 (340)
204 2c92_A 6,7-dimethyl-8-ribityll 22.5 1.2E+02 0.0042 25.7 5.3 59 10-71 17-80 (160)
205 3ruf_A WBGU; rossmann fold, UD 22.2 1.5E+02 0.005 27.0 6.3 56 10-73 25-110 (351)
206 1eiw_A Hypothetical protein MT 22.0 75 0.0026 25.2 3.6 17 115-131 58-74 (111)
207 3fni_A Putative diflavin flavo 21.8 1.4E+02 0.0048 24.5 5.5 43 28-70 19-63 (159)
208 3gdo_A Uncharacterized oxidore 21.6 1E+02 0.0035 28.9 5.1 11 63-73 65-75 (358)
209 1v8a_A Hydroxyethylthiazole ki 21.5 2.2E+02 0.0076 25.6 7.3 52 9-72 14-65 (265)
210 4fb5_A Probable oxidoreductase 21.4 98 0.0034 28.7 5.0 19 53-72 85-103 (393)
211 2r6j_A Eugenol synthase 1; phe 21.2 2.1E+02 0.0071 25.6 7.1 19 54-72 70-88 (318)
212 3awd_A GOX2181, putative polyo 21.1 2.5E+02 0.0086 24.1 7.4 11 63-73 90-100 (260)
213 1sqs_A Conserved hypothetical 20.9 1.1E+02 0.0036 26.9 4.8 37 12-49 3-40 (242)
214 2gn4_A FLAA1 protein, UDP-GLCN 20.9 2.2E+02 0.0074 26.2 7.2 64 2-73 11-101 (344)
215 1xg5_A ARPG836; short chain de 20.6 2E+02 0.0067 25.4 6.7 40 1-48 22-62 (279)
216 3h5i_A Response regulator/sens 20.2 2.2E+02 0.0075 21.6 6.2 54 6-70 1-57 (140)
217 4gi5_A Quinone reductase; prot 20.1 1.1E+02 0.0037 28.3 4.8 36 12-49 24-60 (280)
218 3hpd_A Hydroxyethylthiazole ki 20.0 2.3E+02 0.0079 25.8 7.0 51 10-72 15-65 (265)
No 1
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=100.00 E-value=2.2e-44 Score=340.11 Aligned_cols=236 Identities=30% Similarity=0.454 Sum_probs=186.6
Q ss_pred CCcEEEEecCcccC-----cCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCcccc
Q 017539 9 ILPRVLIVSRRSVR-----KNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAE 83 (369)
Q Consensus 9 ~~P~IgIv~~~~~~-----~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~ 83 (369)
++|+|||+++.... .+...+|+...|+++|+++|+.|+++|...+.+ +.+.++.+|||||+||++++|+.|+++
T Consensus 3 ~~p~IGi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~pv~lp~~~~~~-~~~~l~~~DGlil~GG~~v~P~~yg~~ 81 (254)
T 3fij_A 3 LKPVIGITGNRLVKGVDVFYGHRVTYTQQRYVDAIQKVGGFPIALPIDDPST-AVQAISLVDGLLLTGGQDITPQLYLEE 81 (254)
T ss_dssp CCCEEEEEC------------------CHHHHHHHHHHTCEEEEECCCCGGG-HHHHHHTCSEEEECCCSCCCGGGGTCC
T ss_pred CCCEEEEeCCcccccccccCCcchhhhhHHHHHHHHHCCCEEEEEeCCCchH-HHHHHhhCCEEEECCCCCCChhhcCCc
Confidence 57999999875321 224578999999999999999999999876655 677778999999999999999999987
Q ss_pred CCCCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcce
Q 017539 84 TSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRV 163 (369)
Q Consensus 84 ~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v 163 (369)
.. +....+++.||..++.+++++++.++|+||||+|||+|++++||+++++.....+ ..+
T Consensus 82 ~~--------------~~~~~~~~~rd~~~~~lir~a~~~~~PiLGIC~G~Qll~~a~Gg~v~~~~~~~~~------~~~ 141 (254)
T 3fij_A 82 PS--------------QEIGAYFPPRDSYEIALVRAALDAGKPIFAICRGMQLVNVALGGTLYQDISQVET------KAL 141 (254)
T ss_dssp CC--------------TTCCCCCHHHHHHHHHHHHHHHHTTCCEEEETHHHHHHHHHTTCCEESSGGGSSS------CCC
T ss_pred cC--------------cccCCcChhhhHHHHHHHHHHHHcCCCEEEECHHHHHHHHHhCCceecccccccC------ccc
Confidence 74 3445678999999999999999999999999999999999999999987532211 123
Q ss_pred eecccCCCCCceeEEEEcCCCcchhhhhccccccceEEEEecccchhhcccCCCeEEEEEcCCCcEEEEEeC-CCCCCCC
Q 017539 164 VHIDYDNYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDP-DAYNPAE 242 (369)
Q Consensus 164 ~H~~~~~~~~~~~~V~i~~~s~L~~~~~~~~~~~~~~~~vns~H~~~V~~L~~g~~vlA~s~dg~Veaie~~-~~~~~~~ 242 (369)
.|.+......++++|.+.+++++++++++ .+.|+++|++.|+++|++++++|+++||.|||++++ +
T Consensus 142 ~h~~~~~~~~g~~~v~~~~~s~l~~~~~~-------~~~v~~~H~~~v~~l~~g~~v~a~s~dg~ieai~~~~~------ 208 (254)
T 3fij_A 142 QHLQRVDEQLGSHTIDIEPTSELAKHHPN-------KKLVNSLHHQFIKKLAPSFKVTARTADGMIEAVEGDNL------ 208 (254)
T ss_dssp CCBCCSCTTSCCEEEEECTTSSGGGTCCT-------TEEECCBCSCEESSCCSSEEEEEEETTCCEEEEEESSC------
T ss_pred cccCCCCCccceEEEEeCCCChHHHhcCC-------cEEEEEeccchhhccCCCcEEEEEeCCCcEEEEEecCC------
Confidence 44433233346899999999999998852 688999999999999999999999999999999998 6
Q ss_pred CCcEEEEcccCCccCCCCCCCCCCCCchHHHHHHHHHHHHHH
Q 017539 243 GKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVIAYQ 284 (369)
Q Consensus 243 ~~~i~GvQFHPE~~~~~~~~~~~~~~~~~lf~~Fv~a~~~~~ 284 (369)
+.+++|+|||||++.++... ..++|++|+++|++++
T Consensus 209 ~~~~~gvQfHPE~~~~~~~~------~~~lf~~Fv~~~~~~~ 244 (254)
T 3fij_A 209 PSWYLGVQWHPELMFQTDPE------SEQLFQALVDESKKTM 244 (254)
T ss_dssp SSCEEEESSCGGGTGGGCHH------HHHHHHHHHHHHHSCC
T ss_pred CCeEEEEEcCCccCCCCCch------HHHHHHHHHHHHHHHH
Confidence 24699999999998753221 2689999999987644
No 2
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Probab=100.00 E-value=1.2e-34 Score=281.84 Aligned_cols=226 Identities=19% Similarity=0.183 Sum_probs=150.9
Q ss_pred CCCCCCCCCCcEEEEecCcccCc---CcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCC-CCC
Q 017539 1 MAAHDLSVILPRVLIVSRRSVRK---NKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGE-DID 76 (369)
Q Consensus 1 ~~~~~~~~~~P~IgIv~~~~~~~---~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~-did 76 (369)
|++....+.+|+|||+++..... .....|+...|+++|+++|+.++++|.+.+.+.+.+.++.+||||||||+ +++
T Consensus 21 m~~~~~~~~~P~IGI~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~vv~~~~~~~~i~~~l~~~dglil~GG~~~v~ 100 (315)
T 1l9x_A 21 MRPHGDTAKKPIIGILMQKCRNKVMKNYGRYYIAASYVKYLESAGARVVPVRLDLTEKDYEILFKSINGILFPGGSVDLR 100 (315)
T ss_dssp -------CCCCEEEEECEECCSHHHHTTCSEEEEHHHHHHHHHTTCEEEEECSSCCHHHHHHHHHHSSEEEECCCCCCTT
T ss_pred cCCCcccCCCCEEEEECCcccccccccCcceehHHHHHHHHHHCCCEEEEEecCCCHHHHHHHHhcCCEEEEeCCCcccC
Confidence 45544445689999998753211 11246888899999999999999999877667776667789999999997 777
Q ss_pred CCCccccCCCCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHc-----CCCEEEEeHHHHHHHHHhCCeeeeccch
Q 017539 77 PSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLER-----NIPYLGICRGSQVLNVACGGTLYQDIEK 151 (369)
Q Consensus 77 p~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~-----~iPiLGIClG~QlL~~a~GG~l~~~~~~ 151 (369)
|..|++. +..+++.+++. ++||||||+|||+|++++||++......
T Consensus 101 p~~~~~~-----------------------------~~~l~~~~~~~~~~g~~~PiLGIC~G~Qll~~a~GG~~~~~~~~ 151 (315)
T 1l9x_A 101 RSDYAKV-----------------------------AKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGECLLTATD 151 (315)
T ss_dssp TCHHHHH-----------------------------HHHHHHHHHHHHHTTCCCCEEEETHHHHHHHHHHHSSCCCEEEE
T ss_pred hhhhhHH-----------------------------HHHHHHHHHHHHhcCCCceEEEEChHHHHHHHHhCCcccccccc
Confidence 6544321 12334444433 5999999999999999999985432111
Q ss_pred hhhccCCCCcceeecccCCCCCceeEEEEc---CCCcchhhhhccccc--cceEEEEecccchhhc--------ccCCCe
Q 017539 152 EVSRKCPENQRVVHIDYDNYDGHRHVVKVV---KDTPLHDWFKDSLEE--EKMEIWVNSYHHQGVK--------RLAQRF 218 (369)
Q Consensus 152 e~g~~~~~~~~v~H~~~~~~~~~~~~V~i~---~~s~L~~~~~~~~~~--~~~~~~vns~H~~~V~--------~L~~g~ 218 (369)
+.+ ...++... +++++++.+++.+.. +...+.++ +|+++|+ .+|+++
T Consensus 152 ~~g-------------------~~~p~~~~~~~~~s~L~~~~~~~~~~~l~~~~~~~~-~H~~~V~~~~~~~~~~l~~g~ 211 (315)
T 1l9x_A 152 TVD-------------------VAMPLNFTGGQLHSRMFQNFPTELLLSLAVEPLTAN-FHKWSLSVKNFTMNEKLKKFF 211 (315)
T ss_dssp EEE-------------------EEECCEECSTTTTCSTTTTSCHHHHHHHHHSCCEEE-EEEEECBHHHHHTCHHHHHHE
T ss_pred ccC-------------------CCCCeeeccCCCCChHHHhcChhhhhhccccceEEE-hhhhhcCccccccccccCCCC
Confidence 111 01233332 567888877532100 01234555 9999997 789999
Q ss_pred EEEEEcCCCcEEEE---EeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCC-------chHHHHHHHHHHHH
Q 017539 219 VPMAFAPDGLIEGF---YDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPG-------CPSAYQEFVKAVIA 282 (369)
Q Consensus 219 ~vlA~s~dg~Veai---e~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~~~~~-------~~~lf~~Fv~a~~~ 282 (369)
+++|+++||.+|+| ++++ .+++|||||||+..+..+...+.|. ..++|++|+++|++
T Consensus 212 ~v~A~s~dg~ve~i~~i~~~~-------~~i~GVQfHPE~~~~e~~~~~~~p~s~~a~~~~~~lf~~Fv~~a~~ 278 (315)
T 1l9x_A 212 NVLTTNTDGKIEFISTMEGYK-------YPVYGVQWHPEKAPYEWKNLDGISHAPNAVKTAFYLAEFFVNEARK 278 (315)
T ss_dssp EEEEEEESSSCEEEEEEEESS-------SCEEEESSCTTHHHHCCSSCTTCCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCEEEEEEeccCC-------CCEEEEEeCCCCCcccccccccCCccHHHHHHHHHHHHHHHHHHHh
Confidence 99999999977666 5553 6799999999997633221111122 35899999998753
No 3
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=100.00 E-value=2.8e-32 Score=250.67 Aligned_cols=192 Identities=21% Similarity=0.339 Sum_probs=148.3
Q ss_pred CCcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCC-CCCCCCCccccCCCC
Q 017539 9 ILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEG-EDIDPSLYEAETSNL 87 (369)
Q Consensus 9 ~~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG-~didp~~y~~~~~~~ 87 (369)
.+|+|+++...+.+ ...|+++++++|+.+++++++.+.+.+ ..+|||||||| +. +.|++..
T Consensus 12 ~~~~i~~id~~~~~--------~~~~~~~l~~~G~~~~vv~~~~~~~~l----~~~DglIl~GG~p~---~~~~~~~--- 73 (212)
T 2a9v_A 12 HMLKIYVVDNGGQW--------THREWRVLRELGVDTKIVPNDIDSSEL----DGLDGLVLSGGAPN---IDEELDK--- 73 (212)
T ss_dssp CCCBEEEEEESCCT--------TCHHHHHHHHTTCBCCEEETTSCGGGG----TTCSEEEEEEECSC---GGGTGGG---
T ss_pred ccceEEEEeCCCcc--------HHHHHHHHHHCCCEEEEEeCCCCHHHH----hCCCEEEECCCCCC---CCccccc---
Confidence 37899999877543 335889999999999999976544443 35999999999 42 2233211
Q ss_pred ChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeecc
Q 017539 88 SPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHID 167 (369)
Q Consensus 88 ~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~ 167 (369)
. ..+.+.+++.++|+||||+|||+|+.++||++.+.... +.
T Consensus 74 ----------------------~---~~l~~~~~~~~~PiLGIC~G~Qll~~~lGg~v~~~~~~-------------~~- 114 (212)
T 2a9v_A 74 ----------------------L---GSVGKYIDDHNYPILGICVGAQFIALHFGASVVKAKHP-------------EF- 114 (212)
T ss_dssp ----------------------H---HHHHHHHHHCCSCEEEETHHHHHHHHHTTCEEEEEEEE-------------EE-
T ss_pred ----------------------c---hhHHHHHHhCCCCEEEEChHHHHHHHHhCCEEEcCCCc-------------cc-
Confidence 0 11234456789999999999999999999999875322 22
Q ss_pred cCCCCCceeEEEEcCCCcchhhhhccccccceEEEEecccchhhcccCCCeEEEEEcCCCcEEEEEeCCCCCCCCCCcEE
Q 017539 168 YDNYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIM 247 (369)
Q Consensus 168 ~~~~~~~~~~V~i~~~s~L~~~~~~~~~~~~~~~~vns~H~~~V~~L~~g~~vlA~s~dg~Veaie~~~~~~~~~~~~i~ 247 (369)
+++.+.+.+++++++.++ ..+.++++|++.|+++|++++++|+++||.|+|+++++ .+++
T Consensus 115 ------G~~~v~~~~~~~l~~~~~-------~~~~v~~~H~~~v~~l~~~~~vlA~s~d~~i~ai~~~~-------~~i~ 174 (212)
T 2a9v_A 115 ------GKTKVSVMHSENIFGGLP-------SEITVWENHNDEIINLPDDFTLAASSATCQVQGFYHKT-------RPIY 174 (212)
T ss_dssp ------EEEEEEESCCCGGGTTCC-------SEEEEEEEEEEEEESCCTTEEEEEECSSCSCSEEEESS-------SSEE
T ss_pred ------CceeeEECCCChhHhcCC-------CceEEEeEhhhhHhhCCCCcEEEEEeCCCCEEEEEECC-------CCEE
Confidence 257788888888888774 25778899999999999999999999999999999975 6899
Q ss_pred EEcccCCccCCCCCCCCCCCCchHHHHHHHHHHHHHHH
Q 017539 248 GLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVIAYQK 285 (369)
Q Consensus 248 GvQFHPE~~~~~~~~~~~~~~~~~lf~~Fv~a~~~~~~ 285 (369)
|+|||||++.++.+ .++|++|+++|+++++
T Consensus 175 gvQfHPE~~~~~~g--------~~l~~~F~~~~~~~~~ 204 (212)
T 2a9v_A 175 ATQFHPEVEHTQYG--------RDIFRNFIGICASYRE 204 (212)
T ss_dssp EESSCTTSTTSTTH--------HHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCccH--------HHHHHHHHHHHHHhhh
Confidence 99999999875432 5899999999876543
No 4
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=99.97 E-value=1.1e-30 Score=236.59 Aligned_cols=186 Identities=20% Similarity=0.315 Sum_probs=140.7
Q ss_pred EEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCC-ChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChh
Q 017539 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS-GVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPE 90 (369)
Q Consensus 12 ~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~-~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~ 90 (369)
+|+|+.+...+ ...+.++++++|+.+++++... +.+++... .+|||||+||++ ++. .
T Consensus 3 mi~iid~~~s~--------~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~--~~dglil~gG~~-~~~--~--------- 60 (195)
T 1qdl_B 3 LTLIIDNYDSF--------VYNIAQIVGELGSYPIVIRNDEISIKGIERI--DPDRLIISPGPG-TPE--K--------- 60 (195)
T ss_dssp EEEEEECSCSS--------HHHHHHHHHHTTCEEEEEETTTSCHHHHHHH--CCSEEEECCCSS-CTT--S---------
T ss_pred EEEEEECCCch--------HHHHHHHHHhCCCEEEEEeCCCCCHHHHhhC--CCCEEEECCCCC-Chh--h---------
Confidence 38888865432 3467889999999999999753 33343322 599999999964 121 0
Q ss_pred HHHHHHhhcCCCCccCchhhH-HHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeecccC
Q 017539 91 ELEEIRRLHTSDTAIDKEKDS-IELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYD 169 (369)
Q Consensus 91 ~~~~i~~~~~~~~~~~~~rd~-~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~~~ 169 (369)
.++. .+..+++++ +.++|+||||+|||+|+.++||++.+... ..|
T Consensus 61 -----------------~~~~~~~~~~i~~~-~~~~PvLGIC~G~QlL~~~~gg~v~~~~~------------~~~---- 106 (195)
T 1qdl_B 61 -----------------REDIGVSLDVIKYL-GKRTPILGVCLGHQAIGYAFGAKIRRARK------------VFH---- 106 (195)
T ss_dssp -----------------HHHHTTHHHHHHHH-TTTSCEEEETHHHHHHHHHTTCEEEEEEE------------EEE----
T ss_pred -----------------hhhhhHHHHHHHHh-cCCCcEEEEehHHHHHHHHhCCEEeccCC------------CcC----
Confidence 0111 234677775 78999999999999999999999987532 123
Q ss_pred CCCCceeEEEEcCCC--cchhhhhccccccceEEEEecccchhhcccCCCeEEEEEc-CCCcEEEEEeCCCCCCCCCCcE
Q 017539 170 NYDGHRHVVKVVKDT--PLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFA-PDGLIEGFYDPDAYNPAEGKFI 246 (369)
Q Consensus 170 ~~~~~~~~V~i~~~s--~L~~~~~~~~~~~~~~~~vns~H~~~V~~L~~g~~vlA~s-~dg~Veaie~~~~~~~~~~~~i 246 (369)
+.++++.+.+++ ++++.++ ..+.++++|++.|+++|++++++|++ +||.++|+++++ .++
T Consensus 107 ---g~~~~v~~~~~~~~~l~~~~~-------~~~~v~~~H~~~v~~l~~~~~vla~s~~~g~i~a~~~~~-------~~~ 169 (195)
T 1qdl_B 107 ---GKISNIILVNNSPLSLYYGIA-------KEFKATRYHSLVVDEVHRPLIVDAISAEDNEIMAIHHEE-------YPI 169 (195)
T ss_dssp ---EEEEEEEECCSSCCSTTTTCC-------SEEEEEEEEEEEEECCCTTEEEEEEESSSCCEEEEEESS-------SSE
T ss_pred ---CCceEEEECCCCHhHHHhcCC-------CceEEeccccchhhhCCCCcEEEEEECCCCcEEEEEeCC-------CCE
Confidence 235677776677 7877774 36789999999999999999999999 899999999985 589
Q ss_pred EEEcccCCccCCCCCCCCCCCCchHHHHHHHH
Q 017539 247 MGLQFHPERMRRPDSDEFDYPGCPSAYQEFVK 278 (369)
Q Consensus 247 ~GvQFHPE~~~~~~~~~~~~~~~~~lf~~Fv~ 278 (369)
+|+|||||++.++.+ .++|++|++
T Consensus 170 ~gvQfHPE~~~~~~g--------~~l~~~f~~ 193 (195)
T 1qdl_B 170 YGVQFHPESVGTSLG--------YKILYNFLN 193 (195)
T ss_dssp EEESSBTTSTTCTTH--------HHHHHHHHH
T ss_pred EEEecCCCCCCCccH--------HHHHHHHHh
Confidence 999999999875433 689999987
No 5
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=99.97 E-value=1.7e-30 Score=233.73 Aligned_cols=186 Identities=19% Similarity=0.244 Sum_probs=139.3
Q ss_pred EEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhH
Q 017539 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEE 91 (369)
Q Consensus 12 ~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~ 91 (369)
+|+|+.....+ ...+.++++++|+.+++++...+.+.+.. ..+||||||||+ +|..+ .
T Consensus 2 mi~iid~~~~~--------~~~~~~~l~~~G~~~~~~~~~~~~~~~~~--~~~dglil~Gg~--~~~~~---~------- 59 (189)
T 1wl8_A 2 MIVIMDNGGQY--------VHRIWRTLRYLGVETKIIPNTTPLEEIKA--MNPKGIIFSGGP--SLENT---G------- 59 (189)
T ss_dssp EEEEEECSCTT--------HHHHHHHHHHTTCEEEEEETTCCHHHHHH--TCCSEEEECCCS--CTTCC---T-------
T ss_pred eEEEEECCCch--------HHHHHHHHHHCCCeEEEEECCCChHHhcc--cCCCEEEECCCC--Chhhh---h-------
Confidence 48888766432 33688999999999999997665444432 269999999996 33211 0
Q ss_pred HHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeecccCCC
Q 017539 92 LEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNY 171 (369)
Q Consensus 92 ~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~ 171 (369)
.+..+++++.+.++|+||||+|||+|+.++||++.+....++
T Consensus 60 --------------------~~~~~i~~~~~~~~PilGIC~G~Q~l~~~~gg~v~~~~~~~~------------------ 101 (189)
T 1wl8_A 60 --------------------NCEKVLEHYDEFNVPILGICLGHQLIAKFFGGKVGRGEKAEY------------------ 101 (189)
T ss_dssp --------------------THHHHHHTGGGTCSCEEEETHHHHHHHHHHTCEEEECSCCSC------------------
T ss_pred --------------------hHHHHHHHHhhCCCeEEEEcHHHHHHHHHhCCceecCCCccc------------------
Confidence 124567766678999999999999999999999987432122
Q ss_pred CCceeEEEEcCCCcchhhhhccccccceEEEEecccchhhcccCCCeEEEEEcCCCcEEEEEeCCCCCCCCCCcEEEEcc
Q 017539 172 DGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQF 251 (369)
Q Consensus 172 ~~~~~~V~i~~~s~L~~~~~~~~~~~~~~~~vns~H~~~V~~L~~g~~vlA~s~dg~Veaie~~~~~~~~~~~~i~GvQF 251 (369)
++..+.+..++++++.++ ..+.++++|++.+.++|++++++|+++||.++|+++++ .|++|+||
T Consensus 102 --G~~~~~~~~~~~l~~~~~-------~~~~~~~~h~~~v~~l~~~~~vla~s~~g~i~a~~~~~-------~~~~gvQf 165 (189)
T 1wl8_A 102 --SLVEIEIIDEXEIFKGLP-------KRLKVWESHMDEVKELPPKFKILARSETCPIEAMKHEE-------LPIYGVQF 165 (189)
T ss_dssp --EEEEEEESCC--CCTTSC-------SEEEEEECCSEEEEECCTTEEEEEEESSCSCSEEEESS-------SCEEEESS
T ss_pred --CceeEEEecCchHHhCCC-------CceEEEEEeeeehhhCCCCcEEEEEcCCCCEEEEEeCC-------ceEEEEec
Confidence 134555555666766553 25677889999998899999999999999999999985 56999999
Q ss_pred cCCccCCCCCCCCCCCCchHHHHHHHHHHH
Q 017539 252 HPERMRRPDSDEFDYPGCPSAYQEFVKAVI 281 (369)
Q Consensus 252 HPE~~~~~~~~~~~~~~~~~lf~~Fv~a~~ 281 (369)
|||++.++. ..++|++|+++|+
T Consensus 166 HPE~~~~~~--------g~~l~~~f~~~~~ 187 (189)
T 1wl8_A 166 HPEVAHTEK--------GEEILRNFAKLCG 187 (189)
T ss_dssp CTTSTTSTT--------HHHHHHHHHHHHC
T ss_pred CCCcCCCcc--------hHHHHHHHHHHHh
Confidence 999986443 2689999999774
No 6
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=99.97 E-value=3.2e-31 Score=244.86 Aligned_cols=187 Identities=20% Similarity=0.267 Sum_probs=139.1
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCCh
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSP 89 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~ 89 (369)
.++|+|+.....+ . ....++++++|+.++++|.+.+.+.+.. ..+||||||||++ +.|++....
T Consensus 24 ~~~I~iiD~g~~~-------~-~~i~~~l~~~G~~~~vv~~~~~~~~l~~--~~~dglil~Gg~~---~~~~~~~~~--- 87 (218)
T 2vpi_A 24 EGAVVILDAGAQY-------G-KVIDRRVRELFVQSEIFPLETPAFAIKE--QGFRAIIISGGPN---SVYAEDAPW--- 87 (218)
T ss_dssp TTCEEEEECSTTT-------T-HHHHHHHHHTTCCEEEECTTCCHHHHHH--HTCSEEEEEC------------CCC---
T ss_pred CCeEEEEECCCch-------H-HHHHHHHHHCCCEEEEEECCCChHHHhh--cCCCEEEECCCCc---ccccccchh---
Confidence 4789999766432 1 3567889999999999998776666553 3699999999974 224322210
Q ss_pred hHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeecccC
Q 017539 90 EELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYD 169 (369)
Q Consensus 90 ~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~~~ 169 (369)
. .+.+++.++|+||||+|||+|+.++||++.+....+.
T Consensus 88 ---------------~-----------~~~~~~~~~PilGIC~G~Qll~~~~GG~v~~~~~~~~---------------- 125 (218)
T 2vpi_A 88 ---------------F-----------DPAIFTIGKPVLGICYGMQMMNKVFGGTVHKKSVRED---------------- 125 (218)
T ss_dssp ---------------C-----------CGGGGTSSCCEEEETHHHHHHHHHTTCCEEEEEECSC----------------
T ss_pred ---------------H-----------HHHHHHcCCCEEEEcHHHHHHHHHhCCceEeCCCCcc----------------
Confidence 0 0122357899999999999999999999987532222
Q ss_pred CCCCceeEEEEcCCCcchhhhhccccccceEEEEecccchhhcccCCCeEEEEEcCCCcEEEEEeCCCCCCCCCCcEEEE
Q 017539 170 NYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGL 249 (369)
Q Consensus 170 ~~~~~~~~V~i~~~s~L~~~~~~~~~~~~~~~~vns~H~~~V~~L~~g~~vlA~s~dg~Veaie~~~~~~~~~~~~i~Gv 249 (369)
+++++.+.+++++++.+++ .+.++++|++.|+++|++++++|++ ++.|+|+++++ .+++|+
T Consensus 126 ----G~~~v~~~~~~~l~~~l~~-------~~~v~~~H~~~v~~l~~~~~vlA~s-~~~i~ai~~~~-------~~i~gv 186 (218)
T 2vpi_A 126 ----GVFNISVDNTCSLFRGLQK-------EEVVLLTHGDSVDKVADGFKVVARS-GNIVAGIANES-------KKLYGA 186 (218)
T ss_dssp ----EEEEEEECTTSGGGTTCCS-------EEEEEECSEEEESSCCTTCEEEEEE-TTEEEEEEETT-------TTEEEE
T ss_pred ----cEEEEEEccCChhHhcCCC-------CcEEeehhhhHhhhcCCCCEEEEEc-CCeEEEEEECC-------CCEEEE
Confidence 3678888888899888752 4678899999999999999999999 77999999875 689999
Q ss_pred cccCCccCCCCCCCCCCCCchHHHHHHH-HHHH
Q 017539 250 QFHPERMRRPDSDEFDYPGCPSAYQEFV-KAVI 281 (369)
Q Consensus 250 QFHPE~~~~~~~~~~~~~~~~~lf~~Fv-~a~~ 281 (369)
|||||++.++.+ .++|++|+ ++|.
T Consensus 187 QfHPE~~~~~~g--------~~l~~~F~~~~~~ 211 (218)
T 2vpi_A 187 QFHPEVGLTENG--------KVILKNFLYDIAG 211 (218)
T ss_dssp SSCTTSTTSTTH--------HHHHHHHHTTTTC
T ss_pred EcCCCCCCChhH--------HHHHHHHHHHHhC
Confidence 999999875433 68999999 6653
No 7
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=99.97 E-value=2e-29 Score=249.97 Aligned_cols=173 Identities=25% Similarity=0.387 Sum_probs=135.3
Q ss_pred hHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhH
Q 017539 32 EYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDS 111 (369)
Q Consensus 32 ~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~ 111 (369)
..++++|.++|+.++++|++.+.+++.. ..+|||||+|||+ +|. ++.
T Consensus 202 ~ni~r~L~~~G~~v~vvp~~~~~e~i~~--~~~DGliLsGGPg-dp~------------------------------~~~ 248 (379)
T 1a9x_B 202 RNILRMLVDRGCRLTIVPAQTSAEDVLK--MNPDGIFLSNGPG-DPA------------------------------PCD 248 (379)
T ss_dssp HHHHHHHHHTTEEEEEEETTCCHHHHHT--TCCSEEEECCCSB-CST------------------------------TCH
T ss_pred HHHHHHHHHCCCEEEEEeccCCHHHHhh--cCCCEEEEeCCCC-ChH------------------------------HHH
Confidence 3589999999999999998877666553 2699999999974 331 123
Q ss_pred HHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeecccCCCCCceeEEEEcCCCcchhhhh
Q 017539 112 IELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKDTPLHDWFK 191 (369)
Q Consensus 112 ~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~~~~~~V~i~~~s~L~~~~~ 191 (369)
.++.+++++++.++|+||||+|||+|+.++||++++.. + .|.+ .+|++...+.
T Consensus 249 ~~~~~Ir~~~~~~~PILGIClG~QLLa~A~GG~v~k~~---~----------gh~g------~n~pv~~~~~-------- 301 (379)
T 1a9x_B 249 YAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMK---F----------GHHG------GNHPVKDVEK-------- 301 (379)
T ss_dssp HHHHHHHHHTTSCCCEEEETHHHHHHHHHTTCCEEEEE---E----------EEEE------EEEEEEETTT--------
T ss_pred HHHHHHHHHHHcCCCEEEECchHHHHHHHhCcEEEecc---c----------cccc------CceeeEecCC--------
Confidence 45678899998899999999999999999999998752 2 2332 2566653221
Q ss_pred ccccccceEEEEecccchhhcc--cCCCeEEEEEc-CCCcEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCC
Q 017539 192 DSLEEEKMEIWVNSYHHQGVKR--LAQRFVPMAFA-PDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPG 268 (369)
Q Consensus 192 ~~~~~~~~~~~vns~H~~~V~~--L~~g~~vlA~s-~dg~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~~~~~ 268 (369)
...+.+.++|+++|+. ||+++++++++ +||.|||+++++ .+++|+|||||.+..+..
T Consensus 302 ------g~v~its~~H~~aV~~~~Lp~~~~v~a~s~~Dg~ieai~~~~-------~pi~gVQFHPE~~~~p~d------- 361 (379)
T 1a9x_B 302 ------NVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTD-------KPAFSFQGNPEASPGPHD------- 361 (379)
T ss_dssp ------TEEEEEEEEEEEEECSTTCCTTEEEEEEETTTCCEEEEEESS-------SSEEEESSCTTCSSSCST-------
T ss_pred ------CcEEEEecCccceEecccCCCCeEEEEEeCCCCcEEEEEECC-------CCEEEEEeCCcCCCCccc-------
Confidence 1234456789999975 99999999998 799999999975 789999999999876432
Q ss_pred chHHHHHHHHHHHHHH
Q 017539 269 CPSAYQEFVKAVIAYQ 284 (369)
Q Consensus 269 ~~~lf~~Fv~a~~~~~ 284 (369)
..++|++|++++++++
T Consensus 362 ~~~Lf~~Fl~~~~~~~ 377 (379)
T 1a9x_B 362 AAPLFDHFIELIEQYR 377 (379)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 2589999999987654
No 8
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=99.97 E-value=2e-29 Score=227.62 Aligned_cols=188 Identities=19% Similarity=0.224 Sum_probs=132.3
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCC--CCEEEECCCCCCCCCCccccCCCCC
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEP--IHGVLLCEGEDIDPSLYEAETSNLS 88 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~--~DGlll~GG~didp~~y~~~~~~~~ 88 (369)
|+|+|+++.++ +...+++++++.|+.++++++..+.+++.+.+.. .+++||+||++ +|. +..
T Consensus 1 ~~i~iiDn~~s--------~~~~i~~~l~~~G~~~~v~~~~~~~~~i~~~l~~~~~~~iil~gGpg-~~~---~~~---- 64 (192)
T 1i1q_B 1 ADILLLDNIDS--------FTWNLADQLRTNGHNVVIYRNHIPAQTLIDRLATMKNPVLMLSPGPG-VPS---EAG---- 64 (192)
T ss_dssp CEEEEEECSCS--------SHHHHHHHHHHTTCEEEEEETTSCSHHHHHHHTTCSSEEEEECCCSS-CGG---GST----
T ss_pred CcEEEEECCcc--------HHHHHHHHHHHCCCeEEEEECCCCHHHHHHHhhhccCCeEEECCCCc-Cch---hCc----
Confidence 68999986543 3456889999999999999987655666544432 45799999974 221 100
Q ss_pred hhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeeccc
Q 017539 89 PEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDY 168 (369)
Q Consensus 89 ~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~~ 168 (369)
....+++. ++.++|+||||+|||+|+.++||++.+....+.
T Consensus 65 -----------------------~~~~l~~~-~~~~~PilGIC~G~Qll~~~~Gg~v~~~~~~~~--------------- 105 (192)
T 1i1q_B 65 -----------------------CMPELLTR-LRGKLPIIGICLGHQAIVEAYGGYVGQAGEILH--------------- 105 (192)
T ss_dssp -----------------------THHHHHHH-HBTTBCEEEETHHHHHHHHHTSCCCCC---CCS---------------
T ss_pred -----------------------hHHHHHHH-HhcCCCEEEECcChHHHHHHhCCEEEeCCCcEe---------------
Confidence 11245554 567899999999999999999999875421111
Q ss_pred CCCCCceeEEEEcCCCcchhhhhccccccceEEEEecccchhhcccCCCeEEEEEcCCCcEEEEEeCCCCCCCCCCcEEE
Q 017539 169 DNYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMG 248 (369)
Q Consensus 169 ~~~~~~~~~V~i~~~s~L~~~~~~~~~~~~~~~~vns~H~~~V~~L~~g~~vlA~s~dg~Veaie~~~~~~~~~~~~i~G 248 (369)
+....+. ..++++++.++ ..+.++++|++.|.++|++++++|. .|+.++++++++ .+++|
T Consensus 106 ----g~~~~~~-~~~~~l~~~~~-------~~~~v~~~H~~~v~~lp~~~~v~a~-~~~~~~ai~~~~-------~~~~g 165 (192)
T 1i1q_B 106 ----GKATSIE-HDGQAMFAGLA-------NPLPVARYHSLVGSNVPAGLTINAH-FNGMVMAVRHDA-------DRVCG 165 (192)
T ss_dssp ----SEEEEEE-ECCCGGGTTSC-------SSEEEEECCC---CCCCTTCEEEEE-ETTEEEEEEETT-------TTEEE
T ss_pred ----cceeEEe-cCCChHHhcCC-------CCcEEEechhhHhhhCCCccEEEEC-CCCcEEEEEECC-------CCEEE
Confidence 1122232 24556666553 3578999999999999999999995 568999999875 68999
Q ss_pred EcccCCccCCCCCCCCCCCCchHHHHHHHHHHH
Q 017539 249 LQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVI 281 (369)
Q Consensus 249 vQFHPE~~~~~~~~~~~~~~~~~lf~~Fv~a~~ 281 (369)
+|||||++.++.+ .+++++|++.+.
T Consensus 166 vQfHPE~~~~~~g--------~~il~nf~~~~~ 190 (192)
T 1i1q_B 166 FQFHPESILTTQG--------ARLLEQTLAWAQ 190 (192)
T ss_dssp ESSBTTSTTCTTH--------HHHHHHHHHHHT
T ss_pred EEccCcccCCccc--------HHHHHHHHHHHh
Confidence 9999999865443 589999998753
No 9
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=99.96 E-value=4.4e-29 Score=257.91 Aligned_cols=192 Identities=22% Similarity=0.314 Sum_probs=146.9
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCCh
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSP 89 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~ 89 (369)
.++|+|++..+. | .+.+.++++++|+.++++|++.+.+++.+. .+||||||||++ +.|++....
T Consensus 7 ~~~IlIlD~g~~-------~-~~~i~r~lr~~G~~~~i~p~~~~~~~i~~~--~~dgiILsGGp~---s~~~~~~~~--- 70 (525)
T 1gpm_A 7 KHRILILDFGSQ-------Y-TQLVARRVRELGVYCELWAWDVTEAQIRDF--NPSGIILSGGPE---STTEENSPR--- 70 (525)
T ss_dssp SSEEEEEECSCT-------T-HHHHHHHHHHTTCEEEEEESCCCHHHHHHH--CCSEEEECCCSS---CTTSTTCCC---
T ss_pred CCEEEEEECCCc-------c-HHHHHHHHHHCCCEEEEEECCCCHHHHhcc--CCCEEEECCcCc---cccccCCcc---
Confidence 378999975532 2 256889999999999999998777777654 589999999974 345443210
Q ss_pred hHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeecccC
Q 017539 90 EELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYD 169 (369)
Q Consensus 90 ~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~~~ 169 (369)
.+ +.+.+.++||||||+|||+|+.++||++.+....++|
T Consensus 71 ---------------~~-----------~~~~~~g~PvLGIC~G~Qlla~~~GG~V~~~~~~e~G--------------- 109 (525)
T 1gpm_A 71 ---------------AP-----------QYVFEAGVPVFGVCYGMQTMAMQLGGHVEASNEREFG--------------- 109 (525)
T ss_dssp ---------------CC-----------GGGGTSSSCEEEETHHHHHHHHHHTCEEECCSSCEEE---------------
T ss_pred ---------------hH-----------HHHHHCCCCEEEEChHHHHHHHHcCCEEEeCCCcccc---------------
Confidence 01 2234678999999999999999999999876433433
Q ss_pred CCCCceeEEEEcCCCcchhhhhccccc-cceEEEEecccchhhcccCCCeEEEEEcCCCcEEEEEeCCCCCCCCCCcEEE
Q 017539 170 NYDGHRHVVKVVKDTPLHDWFKDSLEE-EKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMG 248 (369)
Q Consensus 170 ~~~~~~~~V~i~~~s~L~~~~~~~~~~-~~~~~~vns~H~~~V~~L~~g~~vlA~s~dg~Veaie~~~~~~~~~~~~i~G 248 (369)
++.+.+.+++++++.+++.... ....+.++++|++.|+++|++++++|+++++.|+|+++++ .+++|
T Consensus 110 -----~~~v~~~~~~~L~~~l~~~~~~~~~~~~~v~~~H~~~V~~lp~g~~v~A~s~~~~i~ai~~~~-------~~i~g 177 (525)
T 1gpm_A 110 -----YAQVEVVNDSALVRGIEDALTADGKPLLDVWMSHGDKVTAIPSDFITVASTESCPFAIMANEE-------KRFYG 177 (525)
T ss_dssp -----EEEEEECSCCTTTTTCCSEECTTSCEEEEEEEEECSEEEECCTTCEEEEECSSCSCSEEEETT-------TTEEE
T ss_pred -----eEEEEeCCCCHhhccCccccccccccceEEEEEccceeeeCCCCCEEEEECCCCCEEEEEECC-------CCEEE
Confidence 5677777778888877531100 1125789999999999999999999999999999999975 68999
Q ss_pred EcccCCccCCCCCCCCCCCCchHHHHHHHH
Q 017539 249 LQFHPERMRRPDSDEFDYPGCPSAYQEFVK 278 (369)
Q Consensus 249 vQFHPE~~~~~~~~~~~~~~~~~lf~~Fv~ 278 (369)
+|||||.+.++.+ .++|++|+.
T Consensus 178 vQFHPE~~~~~~g--------~~ll~nF~~ 199 (525)
T 1gpm_A 178 VQFHPEVTHTRQG--------MRMLERFVR 199 (525)
T ss_dssp ESBCTTSTTSTTH--------HHHHHHHHH
T ss_pred EecCCCCCcchhH--------HHHHHHHHH
Confidence 9999999987544 589999984
No 10
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=99.96 E-value=4e-29 Score=257.01 Aligned_cols=183 Identities=21% Similarity=0.350 Sum_probs=140.5
Q ss_pred EEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhHH
Q 017539 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEEL 92 (369)
Q Consensus 13 IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~~ 92 (369)
|+|++..+. |. +.+.++++++|+.++++|++.+.+++.+. .+||||||||++ +.|++....
T Consensus 2 i~ilD~g~~-------~~-~~i~r~l~~~G~~~~i~p~~~~~~~i~~~--~~dgiIlsGGp~---s~~~~~~~~------ 62 (503)
T 2ywb_A 2 VLVLDFGSQ-------YT-RLIARRLRELRAFSLILPGDAPLEEVLKH--RPQALILSGGPR---SVFDPDAPR------ 62 (503)
T ss_dssp EEEEESSCT-------TH-HHHHHHHHTTTCCEEEEETTCCHHHHHTT--CCSEEEECCCSS---CSSCTTCCC------
T ss_pred EEEEECCCc-------HH-HHHHHHHHHCCCEEEEEECCCCHHHHHhc--CCCEEEECCCCc---hhccCCCcc------
Confidence 677765532 22 56889999999999999998777776643 579999999974 345543210
Q ss_pred HHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeecccCCCC
Q 017539 93 EEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNYD 172 (369)
Q Consensus 93 ~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~ 172 (369)
.+ +.+++.++|+||||+|||+|+.++||++.+....++|
T Consensus 63 ------------~~-----------~~~~~~~~PvLGIC~G~Qlla~~~GG~v~~~~~~e~G------------------ 101 (503)
T 2ywb_A 63 ------------PD-----------PRLFSSGLPLLGICYGMQLLAQELGGRVERAGRAEYG------------------ 101 (503)
T ss_dssp ------------CC-----------GGGGCSSCCEEEETHHHHHHHHTTTCEEECC---CEE------------------
T ss_pred ------------hH-----------HHHHhCCCCEEEECHHHHHHHHHhCCeEeeCCCCccc------------------
Confidence 01 2233578999999999999999999999876433443
Q ss_pred CceeEEEEcCCCcchhhhhccccccceEEEEecccchhhcccCCCeEEEEEcCCCcEEEEEeCCCCCCCCCCcEEEEccc
Q 017539 173 GHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQFH 252 (369)
Q Consensus 173 ~~~~~V~i~~~s~L~~~~~~~~~~~~~~~~vns~H~~~V~~L~~g~~vlA~s~dg~Veaie~~~~~~~~~~~~i~GvQFH 252 (369)
++.+.+.+ +++++.+++ .+.++++|++.|.++|++++++|+++++.|+|+++++ .+++|+|||
T Consensus 102 --~~~v~~~~-~~l~~~~~~-------~~~v~~~H~~~v~~lp~g~~v~A~s~~~~i~ai~~~~-------~~~~gvQFH 164 (503)
T 2ywb_A 102 --KALLTRHE-GPLFRGLEG-------EVQVWMSHQDAVTAPPPGWRVVAETEENPVAAIASPD-------GRAYGVQFH 164 (503)
T ss_dssp --EEECSEEC-SGGGTTCCS-------CCEEEEECSCEEEECCTTCEEEEECSSCSCSEEECTT-------SSEEEESBC
T ss_pred --eEEEEecC-cHHhhcCCC-------ccEEEEECCCccccCCCCCEEEEEECCCCEEEEEeCC-------CCEEEEecC
Confidence 45565555 778877742 4568899999999999999999999999999999975 689999999
Q ss_pred CCccCCCCCCCCCCCCchHHHHHHHHHH
Q 017539 253 PERMRRPDSDEFDYPGCPSAYQEFVKAV 280 (369)
Q Consensus 253 PE~~~~~~~~~~~~~~~~~lf~~Fv~a~ 280 (369)
||.+.++.+ .++|++|++.|
T Consensus 165 PE~~~~~~g--------~~ll~~F~~~~ 184 (503)
T 2ywb_A 165 PEVAHTPKG--------MQILENFLELA 184 (503)
T ss_dssp TTSTTSTTH--------HHHHHHHHHHT
T ss_pred CCccccccc--------HHHHHHHHHHh
Confidence 999986543 58999999765
No 11
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=99.96 E-value=6.6e-28 Score=225.44 Aligned_cols=176 Identities=24% Similarity=0.287 Sum_probs=134.5
Q ss_pred HHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhHH
Q 017539 33 YHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSI 112 (369)
Q Consensus 33 ~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~ 112 (369)
++.+++++.|+.+++++.+. .+.+.+.++.+||||||||+ ++.|++...+ |+ ..
T Consensus 28 ~i~~~l~~~G~~v~v~~~~~-~~~~~~~l~~~Dglil~GG~---~~~~~~~~~~-------~l---------------~~ 81 (239)
T 1o1y_A 28 MMEDIFREKNWSFDYLDTPK-GEKLERPLEEYSLVVLLGGY---MGAYEEEKYP-------FL---------------KY 81 (239)
T ss_dssp HHHHHHHHTTCEEEEECGGG-TCCCSSCGGGCSEEEECCCS---CCTTCTTTCT-------HH---------------HH
T ss_pred HHHHHHHhCCCcEEEeCCcC-ccccccchhcCCEEEECCCC---ccccCCccCh-------hH---------------HH
Confidence 46778888898888777542 23344455679999999996 3445543211 11 24
Q ss_pred HHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeecccCCCCCceeEEEEcCCCcchhhhhc
Q 017539 113 ELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKDTPLHDWFKD 192 (369)
Q Consensus 113 e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~~~~~~V~i~~~s~L~~~~~~ 192 (369)
+..+++++++.++|+||||+|||+|+.++||++++... | +++ ++++|...+++++++.++
T Consensus 82 ~~~~i~~~~~~~~PiLGIC~G~QlL~~alGG~v~~~~~---g---------~~~-------G~~~v~~~~~~~l~~~~~- 141 (239)
T 1o1y_A 82 EFQLIEEILKKEIPFLGICLGSQMLAKVLGASVYRGKN---G---------EEI-------GWYFVEKVSDNKFFREFP- 141 (239)
T ss_dssp HHHHHHHHHHHTCCEEEETHHHHHHHHHTTCCEEECTT---C---------CEE-------EEEEEEECCCCGGGTTSC-
T ss_pred HHHHHHHHHHCCCCEEEEchhHHHHHHHcCCeEecCCC---C---------Ccc-------ccEEEEECCCCchHHhCC-
Confidence 56889999999999999999999999999999998642 1 122 257787777888888775
Q ss_pred cccccceEEEEecccchhhcccCCCeEEEEEcCCCcEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCCchHH
Q 017539 193 SLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSA 272 (369)
Q Consensus 193 ~~~~~~~~~~vns~H~~~V~~L~~g~~vlA~s~dg~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~~~~~~~~l 272 (369)
..+.++.+|++.+ ++|++++++|+++||.++|++++ . ++|+|||||++. .+
T Consensus 142 ------~~~~~~~~H~~~v-~lp~~~~vlA~s~~~~iea~~~~--------~-i~gvQfHPE~~~-------------~~ 192 (239)
T 1o1y_A 142 ------DRLRVFQWHGDTF-DLPRRATRVFTSEKYENQGFVYG--------K-AVGLQFHIEVGA-------------RT 192 (239)
T ss_dssp ------SEEEEEEEESEEE-CCCTTCEEEEECSSCSCSEEEET--------T-EEEESSBSSCCH-------------HH
T ss_pred ------CCceeEeecCCcc-ccCCCCEEEEEcCCCCEEEEEEC--------C-EEEEEeCccCCH-------------HH
Confidence 2577888999988 69999999999999999999986 4 999999999853 58
Q ss_pred HHHHHHHHHHH
Q 017539 273 YQEFVKAVIAY 283 (369)
Q Consensus 273 f~~Fv~a~~~~ 283 (369)
+++|++...+.
T Consensus 193 ~~~~~~~~~~~ 203 (239)
T 1o1y_A 193 MKRWIEAYKDE 203 (239)
T ss_dssp HHHHHHHTHHH
T ss_pred HHHHHHHhHHH
Confidence 89998876544
No 12
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=99.96 E-value=1.3e-28 Score=254.54 Aligned_cols=191 Identities=24% Similarity=0.343 Sum_probs=139.8
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChh
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPE 90 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~ 90 (369)
.+|+|++..+. | ...+.++++++|+.+.++|++.+.+++.+. .+||||||||+. +.|++...
T Consensus 11 ~~I~IlD~g~~-------~-~~~i~r~lr~~Gv~~~i~p~~~~~~~i~~~--~~dgIILsGGp~---sv~~~~~~----- 72 (527)
T 3tqi_A 11 HRILILDFGSQ-------Y-AQLIARRVREIGVYCELMPCDIDEETIRDF--NPHGIILSGGPE---TVTLSHTL----- 72 (527)
T ss_dssp SEEEEEECSCT-------T-HHHHHHHHHHHTCEEEEEETTCCSSSSTTT--CCSEEEECCCCC----------------
T ss_pred CeEEEEECCCc-------c-HHHHHHHHHHCCCeEEEEECCCCHHHHHhc--CCCEEEECCcCc---ccccCCCh-----
Confidence 58999976542 2 246788999999999999987776665543 579999999974 23433211
Q ss_pred HHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeecccCC
Q 017539 91 ELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDN 170 (369)
Q Consensus 91 ~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~ 170 (369)
.+.+.+.+.++||||||+|||+|+.++||++.+....++|
T Consensus 73 ------------------------~~~~~~~~~~~PvLGIC~G~Qlla~~lGG~V~~~~~~e~G---------------- 112 (527)
T 3tqi_A 73 ------------------------RAPAFIFEIGCPVLGICYGMQTMAYQLGGKVNRTAKAEFG---------------- 112 (527)
T ss_dssp -------------------------CCCSTTTSSSCEEEETHHHHHHHHHSSSCBC-----CEE----------------
T ss_pred ------------------------hhHHHHHhcCCCEEEEChHHHHHHHHcCCeEEeCCCcccc----------------
Confidence 1112334679999999999999999999999875433433
Q ss_pred CCCceeEEEEcCCCcchhhhhcccc-ccceEEEEecccchhhcccCCCeEEEEEcCCCcEEEEEeCCCCCCCCCCcEEEE
Q 017539 171 YDGHRHVVKVVKDTPLHDWFKDSLE-EEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGL 249 (369)
Q Consensus 171 ~~~~~~~V~i~~~s~L~~~~~~~~~-~~~~~~~vns~H~~~V~~L~~g~~vlA~s~dg~Veaie~~~~~~~~~~~~i~Gv 249 (369)
++.+.+.+++++++.+++... .+...+.++++|++.|.++|++++++|+++++.++|+++++ +++||+
T Consensus 113 ----~~~v~~~~~~~l~~~l~~~~~~~~~~~~~v~~~H~d~v~~lp~g~~v~A~s~~~~i~ai~~~~-------~~~~Gv 181 (527)
T 3tqi_A 113 ----HAQLRVLNPAFLFDGIEDQVSPQGEPLLDVWMSHGDIVSELPPGFEATACTDNSPLAAMADFK-------RRFFGL 181 (527)
T ss_dssp ----EEEEEESSCTTTTSSCCSBCCTTSCCEEEEEEESSSCBCSCCTTCEEEEEETTEEEEEEECSS-------SCEEEE
T ss_pred ----ceEEEEcCCChhhcCCccccccccccceEEEEEcccchhccCCCCEEEEEeCCCcEEEEEcCC-------CCEEEE
Confidence 577888777888877753100 00125789999999999999999999999999999999975 689999
Q ss_pred cccCCccCCCCCCCCCCCCchHHHHHHHH
Q 017539 250 QFHPERMRRPDSDEFDYPGCPSAYQEFVK 278 (369)
Q Consensus 250 QFHPE~~~~~~~~~~~~~~~~~lf~~Fv~ 278 (369)
|||||++.++.+ .++|++|+.
T Consensus 182 QFHPE~~~t~~G--------~~ll~nF~~ 202 (527)
T 3tqi_A 182 QFHPEVTHTPQG--------HRILAHFVI 202 (527)
T ss_dssp SBCSSSTTSTTH--------HHHHHHHHH
T ss_pred Eecccccccccc--------chhhhhhhh
Confidence 999999987654 588999984
No 13
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=99.96 E-value=2.6e-28 Score=248.46 Aligned_cols=221 Identities=20% Similarity=0.289 Sum_probs=153.5
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCC-h--hh--hhhhcCCCCEEEECCCCCCCCCCccccCC
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSG-V--HM--LLDSFEPIHGVLLCEGEDIDPSLYEAETS 85 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~-~--~~--l~~~l~~~DGlll~GG~didp~~y~~~~~ 85 (369)
-+|++|.-+......+. -+.+....+-...++.+.+...++. . +. ..+.++.+||||+|||++ ++ .
T Consensus 294 v~IalVGKY~~l~DaY~-Sv~eAL~hag~~~~~~V~I~wIds~~l~~~~~~~~~~L~~~DgIIlpGG~G-~~------~- 364 (535)
T 3nva_A 294 INIALVGKYTKLKDSYI-SIKEAIYHASAYIGVRPKLIWIESTDLESDTKNLNEILGNVNGIIVLPGFG-SR------G- 364 (535)
T ss_dssp EEEEEEESCTTSGGGGH-HHHHHHHHHHHHTTCEEEEEEEEGGGGCCSSSCCTTTTTSCSEEEECCCCS-ST------T-
T ss_pred eEEEEEecCcCCchhHH-HHHHHHHHHHHHcCCCeEEEEecchhccccccchhhhccCCCEEEECCCCC-Cc------c-
Confidence 46888877754323322 2223333334445666665432221 0 10 134677899999999963 11 0
Q ss_pred CCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCee--eeccc-hhhhccCCCCcc
Q 017539 86 NLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTL--YQDIE-KEVSRKCPENQR 162 (369)
Q Consensus 86 ~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l--~~~~~-~e~g~~~~~~~~ 162 (369)
....+.++++++++++|+||||+|||+|++++||++ +++.. .|+++. ...+
T Consensus 365 ------------------------~~g~i~~ir~a~~~~~PiLGIClG~Qll~va~Gg~v~g~qda~s~Ef~~~--~~~p 418 (535)
T 3nva_A 365 ------------------------AEGKIKAIKYAREHNIPFLGICFGFQLSIVEFARDVLGLSEANSTEINPN--TKDP 418 (535)
T ss_dssp ------------------------HHHHHHHHHHHHHHTCCEEEETHHHHHHHHHHHHTTTCCTTCEETTTCTT--CSCE
T ss_pred ------------------------HHHHHHHHHHHHHcCCcEEEECcchhHHHHHhhccccCccCCcccccCCC--CCCC
Confidence 022457889999999999999999999999999998 46664 445321 1122
Q ss_pred -eeeccc----C----CCCCceeEEEEcCCCcchhhhhcccccc--ceEEEEecccchhhcccCCCeEEEEEcCCCcEEE
Q 017539 163 -VVHIDY----D----NYDGHRHVVKVVKDTPLHDWFKDSLEEE--KMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEG 231 (369)
Q Consensus 163 -v~H~~~----~----~~~~~~~~V~i~~~s~L~~~~~~~~~~~--~~~~~vns~H~~~V~~L~~g~~vlA~s~dg~Vea 231 (369)
+.|+.. . .+..+.|+|.+.++|.++++|+...+.+ +++|.||+.|++.++ +++|+++|+++||.|||
T Consensus 419 vI~~m~eq~~~~~~ggtmrlg~h~v~l~~gS~L~~iyG~~~I~erHrHryeVNs~h~q~l~--~~GL~vsA~s~DG~IEA 496 (535)
T 3nva_A 419 VITLLDEQKNVTQLGGTMRLGAQKIILKEGTIAYQLYGKKVVYERHRHRYEVNPKYVDILE--DAGLVVSGISENGLVEI 496 (535)
T ss_dssp EEECBCSSSCBCSSCCCCEEEEEEEEECTTSHHHHHHTSSEEEEEEEECCEECHHHHHHHH--HTTCEEEEECTTCCEEE
T ss_pred eeecchhcccccccCCccccCceEEEEcCCCcHHHHhCCCeeeecccccceechHHHhhcc--cCCeEEEEEeCCCCEEE
Confidence 233311 1 1223689999999999999998644333 356899999999997 48999999999999999
Q ss_pred EEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCCchHHHHHHHHHHH
Q 017539 232 FYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVI 281 (369)
Q Consensus 232 ie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~~~~~~~~lf~~Fv~a~~ 281 (369)
+++++ ++|++|+|||||+.+++... .++|++|+++|.
T Consensus 497 IE~~~------~pf~vGVQfHPE~~~~p~~~-------~~LF~~Fv~Aa~ 533 (535)
T 3nva_A 497 IELPS------NKFFVATQAHPEFKSRPTNP-------SPIYLGFIRAVA 533 (535)
T ss_dssp EECTT------SSCEEEESSCGGGGCCSSSC-------CHHHHHHHHHHT
T ss_pred EEeCC------CCcEEEEEeCCEecCCCCCh-------hHHHHHHHHHHH
Confidence 99986 46789999999998875433 489999999885
No 14
>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}
Probab=99.95 E-value=7.9e-29 Score=236.19 Aligned_cols=220 Identities=17% Similarity=0.202 Sum_probs=142.8
Q ss_pred CCcEEEEecCc-ccCcCcccccchhHHHHHHHHCCCEEEEEcCCCCh-hh-----hhhhcCCCCEEEECCCCCCCCCCcc
Q 017539 9 ILPRVLIVSRR-SVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGV-HM-----LLDSFEPIHGVLLCEGEDIDPSLYE 81 (369)
Q Consensus 9 ~~P~IgIv~~~-~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~-~~-----l~~~l~~~DGlll~GG~didp~~y~ 81 (369)
..++|+|+..+ ....+++.+++ .....+....|+.+.++..+... +. +.+.++.+||||||||++ ++
T Consensus 7 ~~~~Iaivg~y~~~~~dny~S~~-~aL~~~g~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~dgiil~GG~~-~~---- 80 (273)
T 2w7t_A 7 PTVRIAFVGKYLQDAGDTYFSVL-QCFEHCQIALQVRLDILYVDSEELEGPNADEARKALLGCDGIFVPGGFG-NR---- 80 (273)
T ss_dssp -CEEEEEEECCHHHHTTTTHHHH-HHHHHHHHHHTCCEEEEEEEGGGGSSTTTHHHHHHHHTCSEEEECCCCT-TT----
T ss_pred CCCEEEEEeCCCcCCchHHHHHH-HHHHHHHHhcCCceEEeccChhhcccccchhHHHHHhhCCEEEecCCCC-Cc----
Confidence 34899999766 22222333332 23334444566767766544211 10 324566899999999953 11
Q ss_pred ccCCCCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeee--eccc-hhhhccCC
Q 017539 82 AETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLY--QDIE-KEVSRKCP 158 (369)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~--~~~~-~e~g~~~~ 158 (369)
. ...++.+++++++.++|+||||+|||+|++++||++. ++.. .|++..
T Consensus 81 --~-------------------------~~~~~~~i~~~~~~~~PilGIC~G~Qll~~a~Gg~v~~~~~~~s~E~~~~-- 131 (273)
T 2w7t_A 81 --G-------------------------VDGKCAAAQVARMNNIPYFGVXLGMQVAVIELSRNVVGWSDANSEEFNKE-- 131 (273)
T ss_dssp --T-------------------------HHHHHHHHHHHHHHTCCEEEETHHHHHHHHHHHHHTTCCTTCEETTTCTT--
T ss_pred --C-------------------------chhHHHHHHHHHHCCCcEEEECcCHHHHHHHHhCccccccCCchhhcccc--
Confidence 0 0124578899999999999999999999999999984 3432 343311
Q ss_pred CCcc----eeeccc---CCCCCceeEEEEc-CCCcchhhhhccccccceEEEEecccc-------hhhccc-CCCeEEEE
Q 017539 159 ENQR----VVHIDY---DNYDGHRHVVKVV-KDTPLHDWFKDSLEEEKMEIWVNSYHH-------QGVKRL-AQRFVPMA 222 (369)
Q Consensus 159 ~~~~----v~H~~~---~~~~~~~~~V~i~-~~s~L~~~~~~~~~~~~~~~~vns~H~-------~~V~~L-~~g~~vlA 222 (369)
...+ +.|... ..+..++++|.+. +++++++++++ ...++++|+ +.+++| |++++++|
T Consensus 132 ~~~~~l~~~~~~~~~~~~~~~~g~~~v~~~~~~s~l~~~~~~-------~~~v~~~H~Hsy~v~~~~v~~l~~~g~~v~A 204 (273)
T 2w7t_A 132 STHQVVRIMDCDRNKMGANMHLGACDVYIVEKSSIMAKIYSK-------SNIVVERHRHRYEVNTAYFEDLRKAGLCISA 204 (273)
T ss_dssp CSCEEEECCGGGBCSSCBCCEEEEEEEEECCTTSHHHHHTTT-------CSEEEEEEEECCEECGGGHHHHHHTTCEEEE
T ss_pred cCCCceeeccccccccCCcccccceEEEEecCCcHHHHHhCC-------CceEEeecccccccCHHHHHhhccCCcEEEE
Confidence 0001 112110 0011347889886 48888888863 234556553 666678 89999999
Q ss_pred EcCC----C-cEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCCchHHHHHHHHHHHHH
Q 017539 223 FAPD----G-LIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVIAY 283 (369)
Q Consensus 223 ~s~d----g-~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~~~~~~~~lf~~Fv~a~~~~ 283 (369)
+++| | .|++|++++ +++++|+|||||++.++... .++|++|+++|.++
T Consensus 205 ~s~d~~~~g~~ieaie~~~------~p~~~GvQfHPE~~~~~~~~-------~~l~~~Fv~~~~~~ 257 (273)
T 2w7t_A 205 VTDPTFSSRCRVEAVENPS------LRFFLAVQFHPEFISTPMDP-------APTYLSFMAAAAKK 257 (273)
T ss_dssp ESCTTCCTTCCEEEEECTT------SSSEEEESSCGGGSCBTTBC-------CHHHHHHHHHHHTC
T ss_pred EcCCcCCCCCeEEEEEcCC------CCeEEEEeCCCCcCCCCCch-------HHHHHHHHHHHHHH
Confidence 9998 6 899999985 35678999999999875432 48999999988653
No 15
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=99.95 E-value=2.7e-27 Score=245.90 Aligned_cols=205 Identities=20% Similarity=0.263 Sum_probs=141.9
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCCh
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSP 89 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~ 89 (369)
..+|+|++..+.+ .....++|+++|+.+.++|++.+.+++... .+||||||||+. +.|++....
T Consensus 7 ~~~IlilD~Gs~~--------~~~I~r~lre~Gv~~eiv~~~~~~~~i~~~--~~dgIIlsGGp~---s~~~~~~~~--- 70 (556)
T 3uow_A 7 YDKILVLNFGSQY--------FHLIVKRLNNIKIFSETKDYGVELKDIKDM--NIKGVILSGGPY---SVTEAGSPH--- 70 (556)
T ss_dssp CCEEEEEESSCTT--------HHHHHHHHHHTTCCEEEEETTCCGGGTTTS--CEEEEEECCCSC---CTTSTTCCC---
T ss_pred CCEEEEEECCCcc--------HHHHHHHHHHCCCeEEEEECCCCHHHHhhc--CCCEEEECCCCC---cccccCCcc---
Confidence 3679998766432 335788999999999999987766665432 689999999974 234332110
Q ss_pred hHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccC---CCCc-----
Q 017539 90 EELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKC---PENQ----- 161 (369)
Q Consensus 90 ~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~---~~~~----- 161 (369)
+...+++.+.+.++|+||||+|||+|+.++||++.+....++|... ....
T Consensus 71 ----------------------~~~~l~~~a~~~g~PvLGIC~G~QlLa~~lGG~V~~~~~~E~G~~~l~~~~~~~~~~~ 128 (556)
T 3uow_A 71 ----------------------LKKEVFEYFLEKKIPIFGICYGMQEIAVQMNGEVKKSKTSEYGCTDVNILRNDNINNI 128 (556)
T ss_dssp ----------------------CCHHHHHHHHHTTCCEEEETHHHHHHHHHTTCEEEEEEEEEEEEEEEEECCTTGGGGC
T ss_pred ----------------------hhHHHHHHhhhcCCCEEEECHHHHHHHHHhCCcEecCCCcccCCcceeeccCcccccc
Confidence 0124667777889999999999999999999999876555554210 0000
Q ss_pred --------ceeecccCCCCCceeEEEEcCCCcchhhhhccccccceEEEEecccchhhcccCCCeEEEEEcCCCcEEEEE
Q 017539 162 --------RVVHIDYDNYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFY 233 (369)
Q Consensus 162 --------~v~H~~~~~~~~~~~~V~i~~~s~L~~~~~~~~~~~~~~~~vns~H~~~V~~L~~g~~vlA~s~dg~Veaie 233 (369)
..+|++|... .+.....+++++.+. +..+.++++|++.|..+|++++++|++++|.++|++
T Consensus 129 p~v~~~~~~~~~mg~~~n-----~~~~~~~~~Lf~gl~------~~~~~v~~~H~d~V~~lp~g~~vlA~s~~~~i~ai~ 197 (556)
T 3uow_A 129 TYCRNFGDSSSAMDLYSN-----YKLMNETCCLFENIK------SDITTVWMNHNDEVTKIPENFYLVSSSENCLICSIY 197 (556)
T ss_dssp SGGGGC---CCHHHHHTT-----SCCCC--CGGGTTCC------SSEEEEEEEEEEEEEECCTTCEEEEEETTEEEEEEE
T ss_pred cceecccccccccccccc-----cccccccchhhcccc------cCceEEEEEccceeeccCCCcEEEEEeCCCCEEEEE
Confidence 0012222000 000111234555441 236789999999999999999999999999999999
Q ss_pred eCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCCchHHHHHHHH
Q 017539 234 DPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVK 278 (369)
Q Consensus 234 ~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~~~~~~~~lf~~Fv~ 278 (369)
+++ .++||+|||||++.++.+ .++|++|+.
T Consensus 198 ~~~-------~~i~GvQFHPE~~~~~~G--------~~ll~nFl~ 227 (556)
T 3uow_A 198 NKE-------YNIYGVQYHPEVYESLDG--------ELMFYNFAY 227 (556)
T ss_dssp ETT-------TTEEEESSCTTSTTSTTH--------HHHHHHHHT
T ss_pred ECC-------CCEEEEEcCCCCCccccc--------hHHHHHHHH
Confidence 975 679999999999987654 578888883
No 16
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=99.95 E-value=9.8e-28 Score=247.35 Aligned_cols=227 Identities=22% Similarity=0.274 Sum_probs=149.6
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCC---hhhhhhhcCCCCEEEECCCCCCCCCCccccCCC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSG---VHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSN 86 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~---~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~ 86 (369)
.+.|+++..+......+.+ +.+....+....|+.+.+++.+.. ++.+.+.+..+||||||||++ +|.
T Consensus 300 ~v~I~ivgkyv~l~D~y~S-v~~aL~~~g~~~g~~v~I~~~d~~~~~~~~~~~~L~~~DGIILpGGfG-d~~-------- 369 (550)
T 1vco_A 300 TVKIAIAGKYVKMPDAYLS-LLEALRHAGIKNRARVEVKWVDAESLEAADLEEAFRDVSGILVPGGFG-VRG-------- 369 (550)
T ss_dssp EEEEEEEESCC---CTTHH-HHHHHHHHHHHTTEEEEEEEEEGGGC--CCHHHHTTTCSCEEECCCCS-STT--------
T ss_pred ceEEcccCCeEEEEecHHH-HHHHHHHHHHHcCCeEEEEEeCccccccchHHHHHhcCCEEEECCCCC-Ccc--------
Confidence 4678887765432222222 223344455567778887755432 123445577899999999963 221
Q ss_pred CChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeec--c-chhhhccCCC----
Q 017539 87 LSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQD--I-EKEVSRKCPE---- 159 (369)
Q Consensus 87 ~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~--~-~~e~g~~~~~---- 159 (369)
....+.+++++++.++|+||||+|||+|+.++||++.+. . ..|+++...+
T Consensus 370 -----------------------~~g~i~~ir~a~e~~iPiLGICLGmQlL~~a~Gg~v~~l~~~~s~E~~~~~~hpvi~ 426 (550)
T 1vco_A 370 -----------------------IEGKVRAAQYARERKIPYLGICLGLQIAVIEFARNVAGLKGANSTEFDPHTPHPVID 426 (550)
T ss_dssp -----------------------HHHHHHHHHHHHHTTCCEEEETHHHHHHHHHHHHHTSCCTTCEETTTCTTCSCEEEE
T ss_pred -----------------------hhhhHHHHHHHHHCCCcEEEECcCHHHHHHHhCcccccCCccccccccCCCCCCeEE
Confidence 012357889999999999999999999999999987742 2 1333211000
Q ss_pred ----CcceeecccCCCCCceeEEEEcCCCcchhhhhcccc--ccceEEEEecccchhhcccCCCeEEEEEcCCC------
Q 017539 160 ----NQRVVHIDYDNYDGHRHVVKVVKDTPLHDWFKDSLE--EEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDG------ 227 (369)
Q Consensus 160 ----~~~v~H~~~~~~~~~~~~V~i~~~s~L~~~~~~~~~--~~~~~~~vns~H~~~V~~L~~g~~vlA~s~dg------ 227 (369)
...++|++- .+..++++|.+.+++.+..+++...+ ...+.|.||++|++.+. +++++++|+++||
T Consensus 427 ~~~~q~~i~~~gg-tmrlG~~~v~i~~~s~l~~iy~~~~v~e~h~H~Y~Vns~~~~~l~--~~gl~v~a~s~dG~g~~~~ 503 (550)
T 1vco_A 427 LMPEQLEVEGLGG-TMRLGDWPMRIKPGTLLHRLYGKEEVLERHRHRYEVNPLYVDGLE--RAGLVVSATTPGMRGRGAG 503 (550)
T ss_dssp ESCGGGCC---CC-CCEEEEEEEEECTTSHHHHHHCCSEEEEEEEESEEECHHHHHHHH--HHTEEEEEECCCBTTBSTT
T ss_pred eccccccccccCC-cccccceEEEEccCchhhHhcCCceeeeeccceEEEchHHhhccc--cCCeEEEEEeCCCCccCCC
Confidence 011222221 11125789999888888888865332 12467899999988765 2789999999885
Q ss_pred cEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCCchHHHHHHHHHHHHHHH
Q 017539 228 LIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVIAYQK 285 (369)
Q Consensus 228 ~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~~~~~~~~lf~~Fv~a~~~~~~ 285 (369)
.||++++++ +++++|+|||||+++++... .+||++|++++.++++
T Consensus 504 ~VeaIe~~~------~p~fvGVQFHPE~~~~p~~g-------~~LF~~Fv~aa~~~~~ 548 (550)
T 1vco_A 504 LVEAIELKD------HPFFLGLQSHPEFKSRPMRP-------SPPFVGFVEAALAYQE 548 (550)
T ss_dssp CEEEEEETT------SSSEEEESSCGGGGCBTTBC-------CHHHHHHHHHHHHHTC
T ss_pred cEEEEEeCC------CCEEEEEEeCCccCCCCCCh-------HHHHHHHHHHHHhhcc
Confidence 999999986 23444999999999876422 4899999999887643
No 17
>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A
Probab=99.95 E-value=1.4e-27 Score=229.34 Aligned_cols=218 Identities=15% Similarity=0.185 Sum_probs=143.3
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCC----EEEEEcCCC----------Chhhhh---hhcCCCCEEEECCC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGA----VPAIVPRVS----------GVHMLL---DSFEPIHGVLLCEG 72 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga----~~vivp~~~----------~~~~l~---~~l~~~DGlll~GG 72 (369)
.++|+|+.......+. + .+++++|+.+|+ .++++..+. +.+.+. +.++.+||||||||
T Consensus 25 ~~~Iavv~d~~~~~~s---~--~si~~~L~~~G~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgiil~GG 99 (289)
T 2v4u_A 25 ICSIALVGKYTKLRDC---Y--ASVFKALEHSALAINHKLNLMYIDSIDLEKITETEDPVKFHEAWQKLCKADGILVPGG 99 (289)
T ss_dssp EEEEEEEESCSSCCGG---G--HHHHHHHHHHHHHTTEEEEEEEEEGGGGSHHHHHHCHHHHHHHHHHHHHCSEEEECSC
T ss_pred ceEEEEEecCcCCCcc---H--HHHHHHHHHhhhhhCCceEEEEechhhcccccccCChhhhhhHHHHHhhCCEEEecCC
Confidence 3578888444111111 1 256788887765 333332221 111111 13557999999999
Q ss_pred CCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeee--eccc
Q 017539 73 EDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLY--QDIE 150 (369)
Q Consensus 73 ~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~--~~~~ 150 (369)
++ ++ . ...+..+++++++.++||||||+|||+|+.++||++. ++..
T Consensus 100 ~~-~~-------~------------------------~~~~~~~i~~~~~~~~PilGIC~G~Q~l~~a~Gg~v~~~~~~~ 147 (289)
T 2v4u_A 100 FG-IR-------G------------------------TLGKLQAISWARTKKIPFLGVXLGMQLAVIEFARNCLNLKDAD 147 (289)
T ss_dssp CS-ST-------T------------------------HHHHHHHHHHHHHTTCCEEEETHHHHHHHHHHHHHHSCCTTEE
T ss_pred CC-ch-------h------------------------HHHHHHHHHHHHHcCCcEEEECccHHHHHHHHhccccccccCc
Confidence 53 11 0 0124578899999999999999999999999999985 3432
Q ss_pred -hhhhccCCCCcce-----eecccC---CCCCceeEEEEc-CCCcchhhhhccccccceEEEEecccc-------hhhcc
Q 017539 151 -KEVSRKCPENQRV-----VHIDYD---NYDGHRHVVKVV-KDTPLHDWFKDSLEEEKMEIWVNSYHH-------QGVKR 213 (369)
Q Consensus 151 -~e~g~~~~~~~~v-----~H~~~~---~~~~~~~~V~i~-~~s~L~~~~~~~~~~~~~~~~vns~H~-------~~V~~ 213 (369)
.|++.. ...++ .|...+ .+..++++|.+. ++++++++++. .+.++++|+ +.|++
T Consensus 148 ~~e~~~~--~~~~~i~~~~~h~~~~~~~~~~~g~~~v~~~~~~s~l~~~~~~-------~~~v~~~H~H~y~vn~~~v~~ 218 (289)
T 2v4u_A 148 STEFRPN--APVPLVIDMPEHNPGNLGGTMRLGIRRTVFKTENSILRKLYGD-------VPFIEERHRHRFEVNPNLIKQ 218 (289)
T ss_dssp ESTTCTT--CSEEEEEECCBCCTTCSSCBCEEEEEEEEESCSCCHHHHHTTS-------CSEEEEEEEECEEECGGGSGG
T ss_pred ccccCcc--ccccceecchhhcccccCCccccceEEEEEecCCCHHHHhcCC-------CceEEEecccccccCHHHHHh
Confidence 234311 00111 132110 011236889887 68899998863 245677776 88888
Q ss_pred cC-CCeEEEEEcCCCc-EEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCCchHHHHHHHHHHHHHHHh
Q 017539 214 LA-QRFVPMAFAPDGL-IEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVIAYQKK 286 (369)
Q Consensus 214 L~-~g~~vlA~s~dg~-Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~~~~~~~~lf~~Fv~a~~~~~~~ 286 (369)
|| ++++++|+++||. ||||++++ +++++|+|||||++.++... .++|++|+++|.+...+
T Consensus 219 l~~~g~~v~A~s~dg~~ieaie~~~------~p~~lGvQfHPE~~~~~~~~-------~~lf~~Fv~~~~~~~~~ 280 (289)
T 2v4u_A 219 FEQNDLSFVGQDVDGDRMEIIELAN------HPYFVGVQFHPEFSSRPMKP-------SPPYLGLLLAATGNLNA 280 (289)
T ss_dssp GTTSSEEEEEEETTSCSEEEEEESS------SSCEEEESSBGGGGCBTTBC-------CHHHHHHHHHHHTCHHH
T ss_pred cccCCeEEEEEcCCCCeEEEEEcCC------CCeEEEEECCCCCCCCCCch-------HHHHHHHHHHHHhhhhh
Confidence 99 9999999999996 99999985 34577999999998865422 48999999988765444
No 18
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=99.94 E-value=3.3e-27 Score=250.51 Aligned_cols=167 Identities=22% Similarity=0.319 Sum_probs=126.7
Q ss_pred HHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhHHH
Q 017539 34 HLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIE 113 (369)
Q Consensus 34 ~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e 113 (369)
..+.+++.|+.++++|++.+.+++.. ..+||||||||++ +.|++.... ++
T Consensus 45 iar~lre~Gv~~~ivp~~~~~e~i~~--~~~dGIILsGGp~---s~~~~~~~~------------------~~------- 94 (697)
T 2vxo_A 45 IDRRVRELFVQSEIFPLETPAFAIKE--QGFRAIIISGGPN---SVYAEDAPW------------------FD------- 94 (697)
T ss_dssp HHHHHHHTTCCEEEEETTCCHHHHHH--HTCSEEEEEECC----------CCC------------------CC-------
T ss_pred HHHHHHHCCCEEEEEECCCCHHHHhh--cCCCEEEECCCCC---cccCccchh------------------HH-------
Confidence 56889999999999999877776654 3799999999985 345433211 11
Q ss_pred HHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeecccCCCCCceeEEEEcCCCcchhhhhcc
Q 017539 114 LRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKDTPLHDWFKDS 193 (369)
Q Consensus 114 ~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~~~~~~V~i~~~s~L~~~~~~~ 193 (369)
+.+.+.++|+||||+|||+|+.++||++.+....++| ++++.+.+++++++.+++
T Consensus 95 ----~~i~~~g~PvLGIC~G~QlLa~~lGG~v~~~~~~e~G--------------------~~~v~~~~~~~Lf~~l~~- 149 (697)
T 2vxo_A 95 ----PAIFTIGKPVLGICYGMQMMNKVFGGTVHKKSVREDG--------------------VFNISVDNTCSLFRGLQK- 149 (697)
T ss_dssp ----GGGTTSSCCEEEEEHHHHHHHHHTTCCBCC---------------------------CEEEEECTTSGGGTTCCS-
T ss_pred ----HHHHhCCCCEEEECHHHHHHHHHhCCeEeecCCCccc--------------------eEEEEecCCChhhhcCCc-
Confidence 1123578999999999999999999998875333332 578888778888887752
Q ss_pred ccccceEEEEecccchhhcccCCCeEEEEEcCCCcEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCCchHHH
Q 017539 194 LEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAY 273 (369)
Q Consensus 194 ~~~~~~~~~vns~H~~~V~~L~~g~~vlA~s~dg~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~~~~~~~~lf 273 (369)
.+.++++|++.|+++|++++++|+++ +.|+|+++++ .+++|+|||||.+.++.+ .++|
T Consensus 150 ------~~~v~~~H~~~V~~lp~g~~vlA~s~-~~i~ai~~~~-------~~i~GvQFHPE~~~t~~g--------~~ll 207 (697)
T 2vxo_A 150 ------EEVVLLTHGDSVDKVADGFKVVARSG-NIVAGIANES-------KKLYGAQFHPEVGLTENG--------KVIL 207 (697)
T ss_dssp ------EEEECCCSSCCBSSCCTTCEEEEEET-TEEEEEEETT-------TTEEEESSCTTSSSSTTH--------HHHH
T ss_pred ------cCcceeecccceecCCCCeEEEEEeC-CceEEEEeCC-------CCEEEEEecccCCCCccc--------hhhh
Confidence 56789999999999999999999995 4999999985 789999999999876554 5888
Q ss_pred HHHH
Q 017539 274 QEFV 277 (369)
Q Consensus 274 ~~Fv 277 (369)
++|+
T Consensus 208 ~nFl 211 (697)
T 2vxo_A 208 KNFL 211 (697)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 8888
No 19
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=99.94 E-value=7.9e-27 Score=217.48 Aligned_cols=178 Identities=15% Similarity=0.135 Sum_probs=132.6
Q ss_pred HHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCC-ccccCCCCChhHHHHHHhhcCCCCccCchhhH
Q 017539 33 YHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSL-YEAETSNLSPEELEEIRRLHTSDTAIDKEKDS 111 (369)
Q Consensus 33 ~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~-y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~ 111 (369)
.+.+++.+.|..+.+++.... +.+.+.++.+|||||+||+. +|.. +++.++ + +..
T Consensus 16 ~~~~~l~~~g~~~~~~~~~~~-~~~p~~~~~~d~lii~GGp~-~~~~~~~~~~~---------~-------------~~~ 71 (236)
T 3l7n_A 16 AYLAWAALRGHDVSMTKVYRY-EKLPKDIDDFDMLILMGGPQ-SPSSTKKEFPY---------Y-------------DAQ 71 (236)
T ss_dssp HHHHHHHHTTCEEEEEEGGGT-CCCCSCGGGCSEEEECCCSS-CTTCCTTTCTT---------C-------------CHH
T ss_pred HHHHHHHHCCCeEEEEeeeCC-CCCCCCccccCEEEECCCCC-CcccccccCcc---------c-------------chH
Confidence 466788999999988875332 22233345799999999984 3321 111111 0 112
Q ss_pred HHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeecccCCCCCceeEEEEcC---CCcchh
Q 017539 112 IELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVK---DTPLHD 188 (369)
Q Consensus 112 ~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~~~~~~V~i~~---~s~L~~ 188 (369)
.+..+|+.+++.++|+||||+|||+|+.++||++.+.... ++ ++++|.+.. .+++++
T Consensus 72 ~~~~~i~~~~~~~~PvLGIClG~QlL~~~~Gg~v~~~~~~-------------~~-------G~~~v~~~~~~~~~~l~~ 131 (236)
T 3l7n_A 72 AEVKLIQKAAKSEKIIVGVCLGAQLMGVAYGADYLHSPKK-------------EI-------GNYLISLTEAGKMDSYLS 131 (236)
T ss_dssp HHHHHHHHHHHTTCEEEEETHHHHHHHHHTTCCCEEEEEE-------------EE-------EEEEEEECTTGGGCGGGT
T ss_pred HHHHHHHHHHHcCCCEEEEchHHHHHHHHhCCEEecCCCc-------------ee-------eeEEEEEccCcccChHHh
Confidence 3468899999999999999999999999999998876422 22 257888876 366777
Q ss_pred hhhccccccceEEEEecccchhhcccCCCeEEEEEcCCCcEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCC
Q 017539 189 WFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPG 268 (369)
Q Consensus 189 ~~~~~~~~~~~~~~vns~H~~~V~~L~~g~~vlA~s~dg~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~~~~~ 268 (369)
.++ ..+.++++|++. ..+|++++++|++++|.+++++++ .+++|+|||||++.
T Consensus 132 ~~~-------~~~~v~~~H~~~-~~lp~~~~vla~s~~~~~~a~~~~--------~~v~gvQfHPE~~~----------- 184 (236)
T 3l7n_A 132 DFS-------DDLLVGHWHGDM-PGLPDKAQVLAISQGCPRQIIKFG--------PKQYAFQCHLEFTP----------- 184 (236)
T ss_dssp TSC-------SEEEEEEEEEEE-CCCCTTCEEEEECSSCSCSEEEEE--------TTEEEESSBSSCCH-----------
T ss_pred cCC-------CCcEEEEecCCc-ccCCChheEEEECCCCCEEEEEEC--------CCEEEEEeCCCCCH-----------
Confidence 664 367888999986 569999999999999999999986 47999999999862
Q ss_pred chHHHHHHHHHHHHH
Q 017539 269 CPSAYQEFVKAVIAY 283 (369)
Q Consensus 269 ~~~lf~~Fv~a~~~~ 283 (369)
.++++|++.+..+
T Consensus 185 --~~~~~~~~~~~~~ 197 (236)
T 3l7n_A 185 --ELVAALIAQEDDL 197 (236)
T ss_dssp --HHHHHHHHHCSCH
T ss_pred --HHHHHHHHhhhhh
Confidence 6889999887644
No 20
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=99.94 E-value=7.3e-27 Score=240.66 Aligned_cols=221 Identities=19% Similarity=0.241 Sum_probs=150.4
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCC----EEEEEcCCCChhhhh----hhcCCCCEEEECCCCCCCCCCcc
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGA----VPAIVPRVSGVHMLL----DSFEPIHGVLLCEGEDIDPSLYE 81 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga----~~vivp~~~~~~~l~----~~l~~~DGlll~GG~didp~~y~ 81 (369)
.+.|+++..+.. ..| .-.+++++|..+|+ .+++++.+ .+.+. +.+..+||||||||++ +|.
T Consensus 289 ~v~i~~vGkyv~----l~D-~y~Si~~aL~~~G~~~~~~V~i~~~d--~e~i~~~~~~~l~~~DGIilsGGpg-~~~--- 357 (545)
T 1s1m_A 289 EVTIGMVGKYIE----LPD-AYKSVIEALKHGGLKNRVSVNIKLID--SQDVETRGVEILKGLDAILVPGGFG-YRG--- 357 (545)
T ss_dssp EEEEEEEESSCS----SGG-GGHHHHHHHHHHHHHHTEEEEEEEEE--HHHHHHHCTTTTTTCSEEEECCCCS-STT---
T ss_pred eEEeCCcCCeEE----EEE-HHHHHHHHHHHhCcccCCeEEEccCC--HHHhhhhhhhhhhcCCEEEECCCCC-Ccc---
Confidence 466777665432 122 22457788888775 33444332 22322 3467899999999964 221
Q ss_pred ccCCCCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeee--cc-chhhhccCC
Q 017539 82 AETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQ--DI-EKEVSRKCP 158 (369)
Q Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~--~~-~~e~g~~~~ 158 (369)
......+++++++.++|+||||+|||+|++++||++++ +. ..|++..
T Consensus 358 ----------------------------~~g~~~~i~~a~~~~~PiLGIClG~Qll~va~Gg~v~~l~~a~s~E~~~~-- 407 (545)
T 1s1m_A 358 ----------------------------VEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPD-- 407 (545)
T ss_dssp ----------------------------HHHHHHHHHHHHHTTCCEEEETHHHHHHHHHHHHHHHCCTTCEETTTCSS--
T ss_pred ----------------------------chhhHHHHHHHHHCCCcEEEECChHHHHHHHhCCceecCCCCcccccCCC--
Confidence 01235788999999999999999999999999999874 22 2344321
Q ss_pred CCcceee-c-ccC-----------------CCCCceeEEEEcCCCcchhhhhccccc--cceEEEEecccchhhcccCCC
Q 017539 159 ENQRVVH-I-DYD-----------------NYDGHRHVVKVVKDTPLHDWFKDSLEE--EKMEIWVNSYHHQGVKRLAQR 217 (369)
Q Consensus 159 ~~~~v~H-~-~~~-----------------~~~~~~~~V~i~~~s~L~~~~~~~~~~--~~~~~~vns~H~~~V~~L~~g 217 (369)
...++.+ + .|. .+..+++++.+.+++.+..+|+...+. ..+.|.||+.|++.+. +++
T Consensus 408 ~~hpvi~l~~~w~~~~g~~~~q~~~~~~ggtmrlG~~~v~l~~~s~l~~iyg~~~v~e~h~Hry~VNs~~~~~l~--~~g 485 (545)
T 1s1m_A 408 CKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIE--DAG 485 (545)
T ss_dssp CSCEEEECTTTCCCTTSCCC----------CCEEEEEEEEECTTCHHHHHTTSSEEEEEEEECCEECHHHHHHHH--HTT
T ss_pred CCCceEEeecccccccccccccccccccCccccccceeeEeccCCHHHHhcCCceEEEecCcceEEChHHhhhcc--cCC
Confidence 1112222 1 011 011257889998999999888753221 2456788888888765 489
Q ss_pred eEEEEEcCCC-cEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCCchHHHHHHHHHHHHHHHh
Q 017539 218 FVPMAFAPDG-LIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVIAYQKK 286 (369)
Q Consensus 218 ~~vlA~s~dg-~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~~~~~~~~lf~~Fv~a~~~~~~~ 286 (369)
++++|+++|| .||++++++ +++++|+|||||+..++... .+||++|++++.+++++
T Consensus 486 l~v~a~s~dg~~VEaie~~~------~p~flGVQFHPE~~~~p~~g-------~~LF~~Fv~aa~~~~~~ 542 (545)
T 1s1m_A 486 LRVAGRSGDDQLVEIIEVPN------HPWFVACQFHPEFTSTPRDG-------HPLFAGFVKAASEFQKR 542 (545)
T ss_dssp CEEEEECSSSCCEEEEECTT------SSSEEEESSCGGGTCCTTTC-------CHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCceEEEEeCC------CCEEEEEeCCCCCCCCCCCh-------HHHHHHHHHHHHHHHhh
Confidence 9999999999 899999986 35566999999999876532 49999999999887654
No 21
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}
Probab=99.94 E-value=7e-26 Score=206.39 Aligned_cols=202 Identities=20% Similarity=0.194 Sum_probs=136.6
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCCh
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSP 89 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~ 89 (369)
+++|+|+...... ....++++++.+|+.+++++... .++.+||||||||.+..... . .
T Consensus 2 ~~~i~il~~~~~~-------~~~~~~~~l~~~g~~~~~~~~~~-------~~~~~d~lil~Gg~~~~~~~-~--~----- 59 (213)
T 3d54_D 2 KPRACVVVYPGSN-------CDRDAYHALEINGFEPSYVGLDD-------KLDDYELIILPGGFSYGDYL-R--P----- 59 (213)
T ss_dssp CCEEEEECCTTEE-------EHHHHHHHHHTTTCEEEEECTTC-------CCSSCSEEEECEECGGGGCS-S--T-----
T ss_pred CcEEEEEEcCCCC-------ccHHHHHHHHHCCCEEEEEecCC-------CcccCCEEEECCCCchhhhh-c--c-----
Confidence 4789998765321 01246889999999999997531 24579999999996421100 0 0
Q ss_pred hHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHH--hCCeeeeccchhhhccCCCCcceeecc
Q 017539 90 EELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVA--CGGTLYQDIEKEVSRKCPENQRVVHID 167 (369)
Q Consensus 90 ~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a--~GG~l~~~~~~e~g~~~~~~~~v~H~~ 167 (369)
.. ..++..+..+++++.++++|+||||+|+|+|+.+ ++|++.+... + + .|.
T Consensus 60 ~~---------------~~~~~~~~~~l~~~~~~~~pilgIC~G~qlLa~aGll~g~v~~~~~---~-------~-~~~- 112 (213)
T 3d54_D 60 GA---------------VAAREKIAFEIAKAAERGKLIMGICNGFQILIEMGLLKGALLQNSS---G-------K-FIC- 112 (213)
T ss_dssp TH---------------HHHTSTTHHHHHHHHHHTCEEEECHHHHHHHHHHTSSCSEEECCSS---S-------S-CBC-
T ss_pred cc---------------ccccHHHHHHHHHHHHCCCEEEEECHHHHHHHHcCCCCCCeecCCC---C-------c-eEe-
Confidence 00 0011123578888888999999999999999999 8888765321 0 0 132
Q ss_pred cCCCCCceeEEEEc-CCCcchhhhhccccccceEEEEecccchhhccc-CCCeEEEEEcCC--C---cEEEEEeCCCCCC
Q 017539 168 YDNYDGHRHVVKVV-KDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRL-AQRFVPMAFAPD--G---LIEGFYDPDAYNP 240 (369)
Q Consensus 168 ~~~~~~~~~~V~i~-~~s~L~~~~~~~~~~~~~~~~vns~H~~~V~~L-~~g~~vlA~s~d--g---~Veaie~~~~~~~ 240 (369)
+++.|++. +++++++.+++ ...+.++++|+++...+ |+++.++|++++ | .|+|+++++
T Consensus 113 ------g~~~v~~~~~~~~l~~~~~~-----~~~~~~~~~H~~~s~~~~~~~~~~~a~~~~~ng~~~~i~a~~~~~---- 177 (213)
T 3d54_D 113 ------KWVDLIVENNDTPFTNAFEK-----GEKIRIPIAHGFGRYVKIDDVNVVLRYVKDVNGSDERIAGVLNES---- 177 (213)
T ss_dssp ------CEEEEEECCCSSTTSTTSCT-----TCEEEEECCBSSCEEECSSCCEEEEEESSCSSCCGGGEEEEECSS----
T ss_pred ------eeEEEEeCCCCCceeeccCC-----CCEEEEEeecCceEEEecCCCcEEEEEcCCCCCCccceeEEEcCC----
Confidence 36788887 57888887742 23677888995531112 478999999876 5 899999864
Q ss_pred CCCCcEEEEcccCCccCCCCCCCCCCCCchHHHHHHHHHHH
Q 017539 241 AEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVI 281 (369)
Q Consensus 241 ~~~~~i~GvQFHPE~~~~~~~~~~~~~~~~~lf~~Fv~a~~ 281 (369)
.+++|+|||||++...... .+...++|++|+++|+
T Consensus 178 ---~~~~gvQfHPE~~~~~~~~---~~~g~~l~~~f~~~~~ 212 (213)
T 3d54_D 178 ---GNVFGLMPHPERAVEELIG---GEDGKKVFQSILNYLK 212 (213)
T ss_dssp ---SCEEEECSCSTTTTSTTTT---CSTTSHHHHHHHHHCC
T ss_pred ---CCEEEEeCCHHHhcCHhhh---cCccHHHHHHHHHHhh
Confidence 7899999999998732100 0112589999998763
No 22
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=99.94 E-value=9.4e-26 Score=212.45 Aligned_cols=164 Identities=16% Similarity=0.183 Sum_probs=120.7
Q ss_pred hHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhH
Q 017539 32 EYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDS 111 (369)
Q Consensus 32 ~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~ 111 (369)
..+.+++++.|..+.++..... +.+...++.+|||||+||+. + .|++.+ |+ .
T Consensus 18 ~~i~~~l~~~G~~v~v~~~~~~-~~~p~~~~~~d~lIl~GGp~-~--~~d~~~---------~~---------------~ 69 (250)
T 3m3p_A 18 GHFGDFLAGEHIPFQVLRMDRS-DPLPAEIRDCSGLAMMGGPM-S--ANDDLP---------WM---------------P 69 (250)
T ss_dssp HHHHHHHHHTTCCEEEEEGGGT-CCCCSCGGGSSEEEECCCSS-C--TTSCCT---------TH---------------H
T ss_pred HHHHHHHHHCCCeEEEEeccCC-CcCcCccccCCEEEECCCCC-c--ccccch---------HH---------------H
Confidence 3467789999999988874322 11222345799999999973 1 232211 11 2
Q ss_pred HHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeecccCCCCCceeEEEEcCCCcchhhhh
Q 017539 112 IELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKDTPLHDWFK 191 (369)
Q Consensus 112 ~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~~~~~~~V~i~~~s~L~~~~~ 191 (369)
.+..+++.+++.++|+||||+|+|+|+.++||++++.... +++ +++|.+.+++....+++
T Consensus 70 ~~~~~i~~~~~~~~PvlGIC~G~Qll~~~lGG~V~~~~~~-------------e~G-------~~~v~~~~~~~~~~l~g 129 (250)
T 3m3p_A 70 TLLALIRDAVAQRVPVIGHCLGGQLLAKAMGGEVTDSPHA-------------EIG-------WVRAWPQHVPQALEWLG 129 (250)
T ss_dssp HHHHHHHHHHHHTCCEEEETHHHHHHHHHTTCCEEEEEEE-------------EEE-------EEEEEECSSHHHHHHHS
T ss_pred HHHHHHHHHHHcCCCEEEECHHHHHHHHHhCCEEEeCCCC-------------cee-------eEEEEEecCCCCccccc
Confidence 2457889999999999999999999999999999986432 322 57788766532233332
Q ss_pred ccccccceEEEEecccchhhcccCCCeEEEEEcCCCcEEEEEeCCCCCCCCCCcEEEEcccCCccC
Q 017539 192 DSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMR 257 (369)
Q Consensus 192 ~~~~~~~~~~~vns~H~~~V~~L~~g~~vlA~s~dg~Veaie~~~~~~~~~~~~i~GvQFHPE~~~ 257 (369)
-+..+.++++|++.| ++|++++++|++++|.++|+++++ +++|+|||||++.
T Consensus 130 -----~~~~~~v~~~H~~~v-~lp~~~~vlA~s~~~~~~a~~~~~--------~~~GvQfHPE~~~ 181 (250)
T 3m3p_A 130 -----TWDELELFEWHYQTF-SIPPGAVHILRSEHCANQAYVLDD--------LHIGFQCHIEMQA 181 (250)
T ss_dssp -----CSSCEEEEEEEEEEE-CCCTTEEEEEEETTEEEEEEEETT--------TEEEESSCTTCCH
T ss_pred -----CCCccEEEEEcccee-ecCCCCEEEEEeCCCCEEEEEECC--------eeEEEEeCCcCCH
Confidence 123688999999999 799999999999999999999973 5999999999864
No 23
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=99.94 E-value=3.9e-26 Score=240.37 Aligned_cols=190 Identities=17% Similarity=0.188 Sum_probs=139.9
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChh
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPE 90 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~ 90 (369)
++|+|++..+. ....+.+++.+.|+.+++++++...+ +..+|||||+||+. +|.. ...
T Consensus 447 k~IlviD~gds--------f~~~l~~~l~~~G~~v~Vv~~d~~~~-----~~~~DgIIlsGGPg-~p~d--~~~------ 504 (645)
T 3r75_A 447 CRALIVDAEDH--------FTAMIAQQLSSLGLATEVCGVHDAVD-----LARYDVVVMGPGPG-DPSD--AGD------ 504 (645)
T ss_dssp CEEEEEESSCT--------HHHHHHHHHHHTTCEEEEEETTCCCC-----GGGCSEEEECCCSS-CTTC--TTS------
T ss_pred CEEEEEECCcc--------HHHHHHHHHHHCCCEEEEEECCCccc-----ccCCCEEEECCCCC-Chhh--hhh------
Confidence 46888877643 23457888999999999999875422 23699999999974 3311 110
Q ss_pred HHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeecccCC
Q 017539 91 ELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDN 170 (369)
Q Consensus 91 ~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~ 170 (369)
.|+ ..+..+++++++.++|+||||+|||+|+.++||++.+.... |.
T Consensus 505 --p~i---------------~~~~~lI~~a~~~~iPiLGIClG~QlLa~alGG~V~~~~~~-------------~~---- 550 (645)
T 3r75_A 505 --PRI---------------ARLYAWLRHLIDEGKPFMAVCLSHQILNAILGIPLVRREVP-------------NQ---- 550 (645)
T ss_dssp --HHH---------------HHHHHHHHHHHHHTCCEEEETHHHHHHHHHTTCCEEEEEEE-------------EE----
T ss_pred --hhH---------------HHHHHHHHHHHHCCCCEEEECHHHHHHHHHhCCEEEcCCCc-------------cc----
Confidence 011 22457889999999999999999999999999999875321 21
Q ss_pred CCCceeEEEEcCCCcchhhhhccccccceEEEEecccchhhcccCCCeEEEEEcCCCcEEEEEeCCCCCCCCCCcEEEEc
Q 017539 171 YDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQ 250 (369)
Q Consensus 171 ~~~~~~~V~i~~~s~L~~~~~~~~~~~~~~~~vns~H~~~V~~L~~g~~vlA~s~dg~Veaie~~~~~~~~~~~~i~GvQ 250 (369)
|..+.+.+. +++++..+ .+.+.++++|.+.+..+|++++++|+++||.|++++++ +++|||
T Consensus 551 --G~~~~i~~~-~~~l~~~~-------~~~~~v~~~h~~~~~~lp~g~~v~A~s~dg~i~Ai~~~---------~~~GVQ 611 (645)
T 3r75_A 551 --GIQVEIDLF-GQRERVGF-------YNTYVAQTVRDEMDVDGVGTVAISRDPRTGEVHALRGP---------TFSSMQ 611 (645)
T ss_dssp --EEEEEEEET-TEEEEEEE-------EEEEEEBCSCSEEEETTTEEEEEEECTTTCBEEEEEET---------TEEEES
T ss_pred --ccceEEeee-cCcceecC-------CCcEEEEEehhhccccCCCCeEEEEEcCCCcEEEEEcC---------CEEEEE
Confidence 224556553 34443333 25678888887777779999999999999999999986 379999
Q ss_pred ccCCccCCCCCCCCCCCCchHHHHHHHHHHHHH
Q 017539 251 FHPERMRRPDSDEFDYPGCPSAYQEFVKAVIAY 283 (369)
Q Consensus 251 FHPE~~~~~~~~~~~~~~~~~lf~~Fv~a~~~~ 283 (369)
||||+..++.+ .+||++|++.+...
T Consensus 612 FHPE~~~t~~G--------~~Ll~nFl~~~~~~ 636 (645)
T 3r75_A 612 FHAESVLTVDG--------PRILGEAITHAIRR 636 (645)
T ss_dssp SBTTSTTCTTH--------HHHHHHHHHHHTTT
T ss_pred eCCeecCCcch--------HHHHHHHHHHHHhc
Confidence 99999876554 59999999988643
No 24
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}
Probab=99.93 E-value=6.2e-26 Score=203.27 Aligned_cols=182 Identities=20% Similarity=0.216 Sum_probs=118.9
Q ss_pred EEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhH
Q 017539 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEE 91 (369)
Q Consensus 12 ~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~ 91 (369)
+|+|+.... ++ .+|+++++++|+.+++++. .+ .++.+||||||||++ +.|++.
T Consensus 2 ~i~vl~~~g----~~-----~~~~~~l~~~G~~~~~~~~---~~----~~~~~dglil~GG~~---~~~~~~-------- 54 (186)
T 2ywj_A 2 IIGVLAIQG----DV-----EEHEEAIKKAGYEAKKVKR---VE----DLEGIDALIIPGGES---TAIGKL-------- 54 (186)
T ss_dssp EEEEECSSS----CC-----HHHHHHHHHTTSEEEEECS---GG----GGTTCSEEEECCSCH---HHHHHH--------
T ss_pred EEEEEecCc----ch-----HHHHHHHHHCCCEEEEECC---hH----HhccCCEEEECCCCc---hhhhhh--------
Confidence 688887542 21 2468999999999999873 22 345799999999963 122210
Q ss_pred HHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeecccCCC
Q 017539 92 LEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDNY 171 (369)
Q Consensus 92 ~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~~ 171 (369)
.+.++.. ..++ +.++|+||||+|||+|+.++||++ +. ++. ....+.+.... +
T Consensus 55 --------------~~~~~~~--~~i~---~~~~PilGIC~G~Qll~~~~gg~~-~~----lg~---~~~~~~~~~~~-~ 106 (186)
T 2ywj_A 55 --------------MKKYGLL--EKIK---NSNLPILGTCAGMVLLSKGTGINQ-IL----LEL---MDITVKRNAYG-R 106 (186)
T ss_dssp --------------HHHTTHH--HHHH---TCCCCEEEETHHHHHHSSCCSSCC-CC----CCC---SSEEEETTTTC-S
T ss_pred --------------hhccCHH--HHHH---hcCCcEEEECHHHHHHHHHhCCCc-Cc----cCC---CceeEEeccCC-C
Confidence 0111221 2233 788999999999999999999983 22 220 00011111100 0
Q ss_pred CCceeEEEEcCCCcchhhhhccccccceEEEEecccchhhccc-CCCeEEEEEcCCCcEEEEEeCCCCCCCCCCcEEEEc
Q 017539 172 DGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRL-AQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQ 250 (369)
Q Consensus 172 ~~~~~~V~i~~~s~L~~~~~~~~~~~~~~~~vns~H~~~V~~L-~~g~~vlA~s~dg~Veaie~~~~~~~~~~~~i~GvQ 250 (369)
....+... .++..+ ..+.++++|++.|+++ |++++++|++ |+.++|++++ +++|+|
T Consensus 107 ~~~~~~~~-----~~~~~~--------~~~~~~~~H~~~v~~l~~~~~~v~a~s-d~~~~a~~~~---------~~~gvQ 163 (186)
T 2ywj_A 107 QVDSFEKE-----IEFKDL--------GKVYGVFIRAPVVDKILSDDVEVIARD-GDKIVGVKQG---------KYMALS 163 (186)
T ss_dssp SSCCEEEE-----EEETTT--------EEEEEEESSCCEEEEECCTTCEEEEEE-TTEEEEEEET---------TEEEES
T ss_pred cccceecc-----cccccC--------CcEEEEEEecceeeecCCCCeEEEEEE-CCEEEEEeeC---------CEEEEE
Confidence 00111111 111111 3567889999999889 9999999999 8999999974 699999
Q ss_pred ccCCccCCCCCCCCCCCCchHHHHHHHHHHH
Q 017539 251 FHPERMRRPDSDEFDYPGCPSAYQEFVKAVI 281 (369)
Q Consensus 251 FHPE~~~~~~~~~~~~~~~~~lf~~Fv~a~~ 281 (369)
||||++.. + .++|++|+++|+
T Consensus 164 fHPE~~~~--g--------~~l~~~F~~~~~ 184 (186)
T 2ywj_A 164 FHPELSED--G--------YKVYKYFVENCV 184 (186)
T ss_dssp SCGGGSTT--H--------HHHHHHHHHHHT
T ss_pred CCCCcCCc--h--------hHHHHHHHHHHh
Confidence 99998752 2 589999999874
No 25
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=99.93 E-value=1.6e-25 Score=206.32 Aligned_cols=189 Identities=16% Similarity=0.136 Sum_probs=127.8
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCCh
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSP 89 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~ 89 (369)
+++|+|+.... .+ ..++++++++|+.+++++. .+. ++.+||||||||++ ..+++
T Consensus 23 ~~~I~il~~~~----~~-----~~~~~~l~~~G~~~~~~~~---~~~----l~~~Dglil~GG~~---~~~~~------- 76 (219)
T 1q7r_A 23 NMKIGVLGLQG----AV-----REHVRAIEACGAEAVIVKK---SEQ----LEGLDGLVLPGGES---TTMRR------- 76 (219)
T ss_dssp CCEEEEESCGG----GC-----HHHHHHHHHTTCEEEEECS---GGG----GTTCSEEEECCCCH---HHHHH-------
T ss_pred CCEEEEEeCCC----Cc-----HHHHHHHHHCCCEEEEECC---HHH----HhhCCEEEECCCCh---HHHHH-------
Confidence 57899996432 11 2367899999999999874 222 45799999999952 11110
Q ss_pred hHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeec--c
Q 017539 90 EELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHI--D 167 (369)
Q Consensus 90 ~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~--~ 167 (369)
+ .++..+..+++++++.++||||||+|||+|+.++||++++++.. +. ..+.+. +
T Consensus 77 --~---------------~~~~~~~~~i~~~~~~~~PilGIC~G~QlL~~~~gg~~~~~lg~-~~------~~~~~~~~g 132 (219)
T 1q7r_A 77 --L---------------IDRYGLMEPLKQFAAAGKPMFGTCAGLILLAKRIVGYDEPHLGL-MD------ITVERNSFG 132 (219)
T ss_dssp --H---------------HHHTTCHHHHHHHHHTTCCEEEETTHHHHHEEEEESSCCCCCCC-EE------EEEECHHHH
T ss_pred --H---------------hhhhHHHHHHHHHHHcCCeEEEECHHHHHHHHHhCCCCcCCcCc-cc------eEEEecCCC
Confidence 0 01112357889999999999999999999999999987654310 00 001110 1
Q ss_pred cCCCCCceeEEEEcCCCcchhhhhccccccceEEEEecccchhhcccCCCeEEEEEcCCCcEEEEEeCCCCCCCCCCcEE
Q 017539 168 YDNYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIM 247 (369)
Q Consensus 168 ~~~~~~~~~~V~i~~~s~L~~~~~~~~~~~~~~~~vns~H~~~V~~L~~g~~vlA~s~dg~Veaie~~~~~~~~~~~~i~ 247 (369)
+. ...+.... .+ ..++ ..+.++.+|++.|+.+|++++++|++ |+.+||++++ +++
T Consensus 133 ~~---~~~~~~~~----~~-~g~g-------~~~~~~~~h~~~v~~l~~~~~v~a~s-dg~~ea~~~~---------~i~ 187 (219)
T 1q7r_A 133 RQ---RESFEAEL----SI-KGVG-------DGFVGVFIRAPHIVEAGDGVDVLATY-NDRIVAARQG---------QFL 187 (219)
T ss_dssp CC---CCCEEEEE----EE-TTTE-------EEEEEEESSCCEEEEECTTCEEEEEE-TTEEEEEEET---------TEE
T ss_pred cc---ccceecCc----cc-CCCC-------CceEEEEEecceeeccCCCcEEEEEc-CCEEEEEEEC---------CEE
Confidence 10 01111110 01 1122 35677788999998899999999999 8999999974 699
Q ss_pred EEcccCCccCCCCCCCCCCCCchHHHHHHHHHHHHHH
Q 017539 248 GLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVIAYQ 284 (369)
Q Consensus 248 GvQFHPE~~~~~~~~~~~~~~~~~lf~~Fv~a~~~~~ 284 (369)
|+|||||.+.. ..+|++|+++|.+++
T Consensus 188 GvQfHPE~~~~-----------~~l~~~fl~~~~~~~ 213 (219)
T 1q7r_A 188 GCSFHPELTDD-----------HRLMQYFLNMVKEAK 213 (219)
T ss_dssp EESSCGGGSSC-----------CHHHHHHHHHHHHHH
T ss_pred EEEECcccCCC-----------HHHHHHHHHHHHHhh
Confidence 99999998742 279999999987654
No 26
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=99.92 E-value=3.5e-25 Score=198.65 Aligned_cols=185 Identities=14% Similarity=0.126 Sum_probs=121.9
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCCh
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSP 89 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~ 89 (369)
+|+|||++... + ...|+++++++|+.+++++.. + .++.+|||+||||+ +..+
T Consensus 2 ~p~Igi~~~~~----~-----~~~~~~~l~~~G~~~~~~~~~---~----~l~~~dglil~GG~---~~~~--------- 53 (191)
T 2ywd_A 2 RGVVGVLALQG----D-----FREHKEALKRLGIEAKEVRKK---E----HLEGLKALIVPGGE---STTI--------- 53 (191)
T ss_dssp -CCEEEECSSS----C-----HHHHHHHHHTTTCCCEEECSG---G----GGTTCSEEEECSSC---HHHH---------
T ss_pred CcEEEEEecCC----c-----hHHHHHHHHHCCCEEEEeCCh---h----hhccCCEEEECCCC---hhhh---------
Confidence 69999998642 1 136899999999999998742 2 23469999999994 1111
Q ss_pred hHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcC-CCEEEEeHHHHHHHHHhCC-eeeeccchhhhccCCCCcceeecc
Q 017539 90 EELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERN-IPYLGICRGSQVLNVACGG-TLYQDIEKEVSRKCPENQRVVHID 167 (369)
Q Consensus 90 ~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~-iPiLGIClG~QlL~~a~GG-~l~~~~~~e~g~~~~~~~~v~H~~ 167 (369)
++++ ++.....+++++.+.+ +|+||||+|||+|+.++|+ +++++.. -+. ..+.+..
T Consensus 54 ---~~~~------------~~~~~~~~i~~~~~~~~~PilGiC~G~Q~l~~~~gg~~~~~~lg-~~~------~~~~~~~ 111 (191)
T 2ywd_A 54 ---GKLA------------REYGIEDEVRKRVEEGSLALFGTCAGAIWLAKEIVGYPEQPRLG-VLE------AWVERNA 111 (191)
T ss_dssp ---HHHH------------HHTTHHHHHHHHHHTTCCEEEEETHHHHHHEEEETTCTTCCCCC-CEE------EEEETTC
T ss_pred ---HHhh------------hhhhHHHHHHHHHHCCCCeEEEECHHHHHHHHHhCCCCCCcccc-ccc------eEEEcCC
Confidence 0110 0111257888888889 9999999999999999998 7655431 000 0011110
Q ss_pred cCCCCCcee--EEEEcCCCcchhhhhccccccceEEEEecccchhhcccCCCeEEEEEcCCCcEEEEEeCCCCCCCCCCc
Q 017539 168 YDNYDGHRH--VVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKF 245 (369)
Q Consensus 168 ~~~~~~~~~--~V~i~~~s~L~~~~~~~~~~~~~~~~vns~H~~~V~~L~~g~~vlA~s~dg~Veaie~~~~~~~~~~~~ 245 (369)
.. .....+ .+.+ ++ + ..+.+..+|++.+..+|++++++|++ |+.+++++++ +
T Consensus 112 ~g-~~~~~~~~~~~~-~~------~--------~~~~~~~~Hs~~v~~l~~~~~~~a~~-~~~~~a~~~~---------~ 165 (191)
T 2ywd_A 112 FG-RQVESFEEDLEV-EG------L--------GSFHGVFIRAPVFRRLGEGVEVLARL-GDLPVLVRQG---------K 165 (191)
T ss_dssp SC-CSSSEEEEEEEE-TT------T--------EEEEEEEESCCEEEEECTTCEEEEEE-TTEEEEEEET---------T
T ss_pred cC-Cccccccccccc-cC------C--------CceeEEEEcccceeccCCCcEEEEEE-CCEEEEEEEC---------C
Confidence 00 000111 1111 11 1 23455667887777789999999999 6999999985 4
Q ss_pred EEEEcccCCccCCCCCCCCCCCCchHHHHHHHHHHH
Q 017539 246 IMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVI 281 (369)
Q Consensus 246 i~GvQFHPE~~~~~~~~~~~~~~~~~lf~~Fv~a~~ 281 (369)
++|+|||||.+.. .++|++|+++|.
T Consensus 166 ~~gvQfHPE~~~~-----------~~l~~~f~~~~~ 190 (191)
T 2ywd_A 166 VLASSFHPELTED-----------PRLHRYFLELAG 190 (191)
T ss_dssp EEEESSCGGGSSC-----------CHHHHHHHHHHT
T ss_pred EEEEEeCCCCCCC-----------cHHHHHHHHHhc
Confidence 9999999997642 279999998763
No 27
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=99.92 E-value=9.5e-25 Score=197.13 Aligned_cols=192 Identities=16% Similarity=0.192 Sum_probs=122.9
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChh
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPE 90 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~ 90 (369)
.+|+|+.... .+ .+++++++++|+.+++++. .+. ++.+||||||||+ +..|++.
T Consensus 2 m~I~il~~~~----~~-----~~~~~~l~~~g~~~~~~~~---~~~----l~~~d~iil~GG~---~~~~~~~------- 55 (196)
T 2nv0_A 2 LTIGVLGLQG----AV-----REHIHAIEACGAAGLVVKR---PEQ----LNEVDGLILPGGE---STTMRRL------- 55 (196)
T ss_dssp CEEEEECSSS----CC-----HHHHHHHHHTTCEEEEECS---GGG----GGGCSEEEECCSC---HHHHHHH-------
T ss_pred cEEEEEEccC----Cc-----HHHHHHHHHCCCEEEEeCC---hHH----HhhCCEEEECCCC---hhhHHHH-------
Confidence 4788886421 22 2356889999999998864 222 3469999999995 2222210
Q ss_pred HHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeecccCC
Q 017539 91 ELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDN 170 (369)
Q Consensus 91 ~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~ 170 (369)
.+ ......+++.+.+.++|+||||+|+|+|+.++||+++++. |- ++ ..+.+... .
T Consensus 56 --~~---------------~~~~~~~i~~~~~~~~pilgIC~G~q~l~~~~gg~~~~~l----g~-~~--~~~~~~~~-g 110 (196)
T 2nv0_A 56 --ID---------------TYQFMEPLREFAAQGKPMFGTCAGLIILAKEIAGSDNPHL----GL-LN--VVVERNSF-G 110 (196)
T ss_dssp --HH---------------HTTCHHHHHHHHHTTCCEEEETHHHHHHSBCCC----CCC----CC-SC--EEEECCCS-C
T ss_pred --hh---------------hHHHHHHHHHHHHCCCcEEEECHHHHHHHHHhcCCCCCcc----cC-Cc--eeEeccCC-C
Confidence 00 0011467888889999999999999999999999876543 10 00 00111000 0
Q ss_pred CCCceeEEEEcCCCcchhhhhccccccceEEEEecccchhhcccCCCeEEEEEcCCCcEEEEEeCCCCCCCCCCcEEEEc
Q 017539 171 YDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQ 250 (369)
Q Consensus 171 ~~~~~~~V~i~~~s~L~~~~~~~~~~~~~~~~vns~H~~~V~~L~~g~~vlA~s~dg~Veaie~~~~~~~~~~~~i~GvQ 250 (369)
+.. ..+ ..+..+ ..++ +.+.++++|++.|+.+|++++++|++ |+.++|++++ +++|+|
T Consensus 111 ~~~--~~~--~~~~~~-~~~g-------~~~~~~~~h~~~v~~~~~~~~v~a~~-d~~~~a~~~~---------~~~gvQ 168 (196)
T 2nv0_A 111 RQV--DSF--EADLTI-KGLD-------EPFTGVFIRAPHILEAGENVEVLSEH-NGRIVAAKQG---------QFLGCS 168 (196)
T ss_dssp TTT--SEE--EEEECC-TTCS-------SCEEEEEESCCEEEEECTTCEEEEEE-TTEEEEEEET---------TEEEES
T ss_pred ccc--ccc--cCCccc-ccCC-------CceEEEEEecceecccCCCcEEEEEE-CCEEEEEEEC---------CEEEEE
Confidence 000 011 111111 2232 35678889999998899999999998 7889999874 699999
Q ss_pred ccCCccCCCCCCCCCCCCchHHHHHHHHHHHHHHHh
Q 017539 251 FHPERMRRPDSDEFDYPGCPSAYQEFVKAVIAYQKK 286 (369)
Q Consensus 251 FHPE~~~~~~~~~~~~~~~~~lf~~Fv~a~~~~~~~ 286 (369)
||||.+.. ..+|++|++.|++.+++
T Consensus 169 fHPE~~~~-----------~~l~~~fl~~~~~~~~~ 193 (196)
T 2nv0_A 169 FHPELTED-----------HRVTQLFVEMVEEYKQK 193 (196)
T ss_dssp SCTTSSSC-----------CHHHHHHHHHHHHHHHH
T ss_pred ECCccCCc-----------hHHHHHHHHHHHhhhhh
Confidence 99998642 27999999998765443
No 28
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=99.92 E-value=8e-26 Score=206.29 Aligned_cols=200 Identities=19% Similarity=0.139 Sum_probs=120.4
Q ss_pred EEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhH
Q 017539 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEE 91 (369)
Q Consensus 12 ~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~ 91 (369)
+|+|++.-.. ++ .+..++|+++|+.++++. +++++. .+||||||||++ +..+
T Consensus 4 ~I~iiD~g~~-------n~-~si~~al~~~G~~~~v~~---~~~~l~----~~D~lilPG~g~--~~~~----------- 55 (211)
T 4gud_A 4 NVVIIDTGCA-------NI-SSVKFAIERLGYAVTISR---DPQVVL----AADKLFLPGVGT--ASEA----------- 55 (211)
T ss_dssp CEEEECCCCT-------TH-HHHHHHHHHTTCCEEEEC---CHHHHH----HCSEEEECCCSC--HHHH-----------
T ss_pred EEEEEECCCC-------hH-HHHHHHHHHCCCEEEEEC---CHHHHh----CCCEEEECCCCC--HHHH-----------
Confidence 5778754321 11 357789999999999874 455554 589999998642 1100
Q ss_pred HHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeecccCC-
Q 017539 92 LEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYDN- 170 (369)
Q Consensus 92 ~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~~~~- 170 (369)
... ..+..+++.+++.++|+||||+|||+|+.++|+++.+......+-.. -...+.+.....
T Consensus 56 ~~~----------------~~~~~~i~~~~~~~~PvlGIClG~QlL~~~~g~~~~~~~~~~~gl~~-~~~~v~~~~~~~~ 118 (211)
T 4gud_A 56 MKN----------------LTERDLIELVKRVEKPLLGICLGMQLLGKLSEEKGQKADEIVQCLGL-VDGEVRLLQTGDL 118 (211)
T ss_dssp HHH----------------HHHTTCHHHHHHCCSCEEEETHHHHTTSSEECCC----CCCEECCCS-SSCEEEECCCTTS
T ss_pred HHH----------------HHhcChHHHHHHcCCCEEEEchhHhHHHHHhCCcccccCCcccccee-ccceEEEcccCCc
Confidence 001 11223567777889999999999999999999987654321111000 001111111100
Q ss_pred --CCCceeEEEEcCCCcchhhhhccccccceEEEEecccchhhcccCCCeEEEEEcCCCcEEEEEeCCCCCCCCCCcEEE
Q 017539 171 --YDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMG 248 (369)
Q Consensus 171 --~~~~~~~V~i~~~s~L~~~~~~~~~~~~~~~~vns~H~~~V~~L~~g~~vlA~s~dg~Veaie~~~~~~~~~~~~i~G 248 (369)
....+..+.....+++++.++. ...++.+|++.+ +.+..++|++++|.+.+...++ .+++|
T Consensus 119 ~~~~~~~~~~~~~~~~~l~~~l~~-------~~~~~~~H~~~v---~~~~~~~a~~~~g~~~~~~v~~-------~~v~G 181 (211)
T 4gud_A 119 PLPHMGWNTVQVKEGHPLFNGIEP-------DAYFYFVHSFAM---PVGDYTIAQCEYGQPFSAAIQA-------GNYYG 181 (211)
T ss_dssp CSSEEEEECCEECTTCGGGTTCCT-------TCCEEEEESEEC---CCCTTEEEEEESSSEEEEEEEE-------TTEEE
T ss_pred ceeeccceeeeeeccChhhcCCCC-------CcEEEEEeeEEe---CCCCeEEEEecCCCeEEEEEeC-------CCEEE
Confidence 1112345555667778777653 234566787765 4567788999888555444443 57999
Q ss_pred EcccCCccCCCCCCCCCCCCchHHHHHHHHHHHH
Q 017539 249 LQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVIA 282 (369)
Q Consensus 249 vQFHPE~~~~~~~~~~~~~~~~~lf~~Fv~a~~~ 282 (369)
+|||||++. +.+ .++|++|++.|.+
T Consensus 182 vQFHPE~s~-~~G--------~~ll~nFl~~~ge 206 (211)
T 4gud_A 182 VQFHPERSS-KAG--------ARLIQNFLELRGE 206 (211)
T ss_dssp ESSCGGGSH-HHH--------HHHHHHHHHC---
T ss_pred EEccCEecC-ccH--------HHHHHHHHHHhcc
Confidence 999999863 232 5899999997753
No 29
>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B
Probab=99.91 E-value=1.6e-25 Score=203.06 Aligned_cols=187 Identities=12% Similarity=0.119 Sum_probs=123.1
Q ss_pred EEEEecCcccCcCcccccchhHHHHHHHHCC-----CEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCC
Q 017539 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYG-----AVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSN 86 (369)
Q Consensus 12 ~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~G-----a~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~ 86 (369)
+|+|+..... + . .+|.++++++| +.+++++... + ..+||||||||.+ + ++
T Consensus 2 ~I~iid~~~g---~----~-~s~~~~l~~~G~~~~~~~~~~~~~~~---~-----~~~dglilpG~g~--~---~~---- 56 (201)
T 1gpw_B 2 RIGIISVGPG---N----I-MNLYRGVKRASENFEDVSIELVESPR---N-----DLYDLLFIPGVGH--F---GE---- 56 (201)
T ss_dssp EEEEECCSSS---C----C-HHHHHHHHHHSTTBSSCEEEEECSCC---S-----SCCSEEEECCCSC--S---HH----
T ss_pred EEEEEecCCc---h----H-HHHHHHHHHcCCCCCceEEEEECCCc---c-----cCCCEEEECCCCc--H---HH----
Confidence 6888853311 1 1 45778899999 8888887521 1 3699999998643 1 11
Q ss_pred CChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhC--CeeeeccchhhhccCC--CCcc
Q 017539 87 LSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACG--GTLYQDIEKEVSRKCP--ENQR 162 (369)
Q Consensus 87 ~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~G--G~l~~~~~~e~g~~~~--~~~~ 162 (369)
...++++ ..+..+++++++.++|+||||+|||+|+.++| |+ +++.. .++.... ...+
T Consensus 57 ----~~~~l~~-------------~~~~~~i~~~~~~~~PilGIC~G~Qll~~~~g~~G~-~~~l~-~~~g~v~~~~~~~ 117 (201)
T 1gpw_B 57 ----GMRRLRE-------------NDLIDFVRKHVEDERYVVGVCLGMQLLFEESEEAPG-VKGLS-LIEGNVVKLRSRR 117 (201)
T ss_dssp ----HHHHHHH-------------TTCHHHHHHHHHTTCEEEEETHHHHTTSSEETTEEE-EECCC-SSSEEEEECCCSS
T ss_pred ----HHHHHHh-------------hCHHHHHHHHHHcCCeEEEEChhHHHHHHhhccCCC-CCCcc-eeeeEEEEcCCCC
Confidence 1223321 12357889998999999999999999999997 54 44331 0110000 0001
Q ss_pred eeecccCCCCCceeEEEEcCCCcchhhhhccccccceEEEEecccchhhcccCCCeEEEEEcCC-C-cEEEEEeCCCCCC
Q 017539 163 VVHIDYDNYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPD-G-LIEGFYDPDAYNP 240 (369)
Q Consensus 163 v~H~~~~~~~~~~~~V~i~~~s~L~~~~~~~~~~~~~~~~vns~H~~~V~~L~~g~~vlA~s~d-g-~Veaie~~~~~~~ 240 (369)
++|++ ++++.....+ ..+.++++|++.|+.+ +++++|++++ | .++|++++
T Consensus 118 ~~~~g-------~~~l~~~~~~--------------~~~~v~~~H~~~v~~~--~~~vla~s~~~g~~~~a~~~~----- 169 (201)
T 1gpw_B 118 LPHMG-------WNEVIFKDTF--------------PNGYYYFVHTYRAVCE--EEHVLGTTEYDGEIFPSAVRK----- 169 (201)
T ss_dssp CSEEE-------EEEEEESSSS--------------CCEEEEEEESEEEEEC--GGGEEEEEEETTEEEEEEEEE-----
T ss_pred CCccc-------ceeeEeccCC--------------CCCeEEEECcceeccC--CCEEEEEEccCCceEEEEEEC-----
Confidence 22322 3445432211 2467889999999866 7899999987 6 89999986
Q ss_pred CCCCcEEEEcccCCccCCCCCCCCCCCCchHHHHHHHHHHHH
Q 017539 241 AEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVIA 282 (369)
Q Consensus 241 ~~~~~i~GvQFHPE~~~~~~~~~~~~~~~~~lf~~Fv~a~~~ 282 (369)
.+++|+|||||++.. . ..++|++|+++|.+
T Consensus 170 ---~~i~gvQfHPE~~~~-~--------~~~l~~~f~~~~~~ 199 (201)
T 1gpw_B 170 ---GRILGFQFHPEKSSK-I--------GRKLLEKVIECSLS 199 (201)
T ss_dssp ---TTEEEESSCGGGSHH-H--------HHHHHHHHHHHSSC
T ss_pred ---CCEEEEECCCcccCH-h--------HHHHHHHHHHHhhc
Confidence 479999999999832 2 25899999987653
No 30
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=99.90 E-value=9e-24 Score=192.95 Aligned_cols=188 Identities=12% Similarity=0.082 Sum_probs=120.6
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCCh
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSP 89 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~ 89 (369)
+.+|+|+.- .++ -..++++++++|+.+++++. .+. ++.+|||||||| .|..|++..
T Consensus 20 ~~~I~ii~~----~~~-----~~~~~~~l~~~g~~~~~~~~---~~~----l~~~d~iil~GG---~~~~~~~~~----- 75 (208)
T 2iss_D 20 HMKIGVLGV----QGD-----VREHVEALHKLGVETLIVKL---PEQ----LDMVDGLILPGG---ESTTMIRIL----- 75 (208)
T ss_dssp CCEEEEECS----SSC-----HHHHHHHHHHTTCEEEEECS---GGG----GGGCSEEEECSS---CHHHHHHHH-----
T ss_pred CcEEEEEEC----CCc-----hHHHHHHHHHCCCEEEEeCC---hHH----HhhCCEEEECCC---cHHHHHhhh-----
Confidence 568999842 111 12367889999999998863 223 346999999999 344443200
Q ss_pred hHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCCeeeeccchhhhccCCCCcceeecccC
Q 017539 90 EELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEVSRKCPENQRVVHIDYD 169 (369)
Q Consensus 90 ~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG~l~~~~~~e~g~~~~~~~~v~H~~~~ 169 (369)
+ +.....+++++.+.++|+||||+|||+|+.++||+.++++. -+. ..+.+..
T Consensus 76 ----~---------------~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~~gg~~~~~lg-~~~------~~v~~~~-- 127 (208)
T 2iss_D 76 ----K---------------EMDMDEKLVERINNGLPVFATCAGVILLAKRIKNYSQEKLG-VLD------ITVERNA-- 127 (208)
T ss_dssp ----H---------------HTTCHHHHHHHHHTTCCEEEETHHHHHHEEEEC---CCCCC-CEE------EEEETTT--
T ss_pred ----h---------------hhhHHHHHHHHHHCCCeEEEECHHHHHHHHHcCCCCCCCcc-ccc------eEEEecC--
Confidence 0 00124678888889999999999999999999997554331 000 0000000
Q ss_pred CCCCceeEEEEcCCCcchhhhhccccccceEEEEecccchhhcccCCCeEEEEEcCCCcEEEEEeCCCCCCCCCCcEEEE
Q 017539 170 NYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGL 249 (369)
Q Consensus 170 ~~~~~~~~V~i~~~s~L~~~~~~~~~~~~~~~~vns~H~~~V~~L~~g~~vlA~s~dg~Veaie~~~~~~~~~~~~i~Gv 249 (369)
.....+.+ ..++.+ ..++ .+.+.++++|++.++.+|++++++|++ |+.+++++.+ +++|+
T Consensus 128 -~g~~~~~~--~~~~~~-~~~~------~~~~~~~~~h~~~v~~~~~~~~v~a~~-d~~~~a~~~~---------~i~Gv 187 (208)
T 2iss_D 128 -YGRQVESF--ETFVEI-PAVG------KDPFRAIFIRAPRIVETGKNVEILATY-DYDPVLVKEG---------NILAC 187 (208)
T ss_dssp -TCSGGGCE--EEEECC-GGGC------SSCEEEEESSCCEEEEECSSCEEEEEE-TTEEEEEEET---------TEEEE
T ss_pred -CCcccccc--cCCccc-ccCC------CCceEEEEEeCcccccCCCCcEEEEEE-CCEEEEEEEC---------CEEEE
Confidence 00000111 011222 2232 135778889999998889999999998 6999999864 59999
Q ss_pred cccCCccCCCCCCCCCCCCchHHHHHHHHHH
Q 017539 250 QFHPERMRRPDSDEFDYPGCPSAYQEFVKAV 280 (369)
Q Consensus 250 QFHPE~~~~~~~~~~~~~~~~~lf~~Fv~a~ 280 (369)
|||||.+.. ..+|++|+++|
T Consensus 188 QfHPE~~~~-----------~~l~~~fl~~~ 207 (208)
T 2iss_D 188 TFHPELTDD-----------LRLHRYFLEMV 207 (208)
T ss_dssp SSCGGGSSC-----------CHHHHHHHTTC
T ss_pred EeCCCcCCc-----------HHHHHHHHHHh
Confidence 999998753 27999999764
No 31
>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G
Probab=99.89 E-value=3.2e-23 Score=191.48 Aligned_cols=201 Identities=15% Similarity=0.185 Sum_probs=123.4
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHC---CCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGY---GAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSN 86 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~---Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~ 86 (369)
+++|+|++... .+ ..|+++++++ |+.+++++. .+.+ +.+||||||||++ +.++...
T Consensus 3 ~~~I~Il~~~~----~~-----~~~~~~l~~~~~~G~~~~~~~~---~~~l----~~~dglil~GG~~---~~~~~~~-- 61 (227)
T 2abw_A 3 EITIGVLSLQG----DF-----EPHINHFIKLQIPSLNIIQVRN---VHDL----GLCDGLVIPGGES---TTVRRCC-- 61 (227)
T ss_dssp CEEEEEECTTS----CC-----HHHHHHHHTTCCTTEEEEEECS---HHHH----HTCSEEEECCSCH---HHHHHHT--
T ss_pred CcEEEEEeCCC----Cc-----HHHHHHHHHhccCCeEEEEEcC---cccc----ccCCEEEECCCcH---HHHHHHH--
Confidence 47899997552 11 3589999999 999998873 2333 4699999999952 2221100
Q ss_pred CChhHHHHHHhhcCCCCccCchhh-HHHHHHHHHHHHc-CCCEEEEeHHHHHHHHHhCCeeeecc---chhhhccCCCCc
Q 017539 87 LSPEELEEIRRLHTSDTAIDKEKD-SIELRLAKLCLER-NIPYLGICRGSQVLNVACGGTLYQDI---EKEVSRKCPENQ 161 (369)
Q Consensus 87 ~~~~~~~~i~~~~~~~~~~~~~rd-~~e~~li~~~~e~-~iPiLGIClG~QlL~~a~GG~l~~~~---~~e~g~~~~~~~ 161 (369)
.+| .-...+++.+.+. ++||||||+|||+|+.++||++.... ..++|- + ..
T Consensus 62 ---------------------~~d~~~~~~~i~~~~~~~g~PilGIC~G~QlL~~~~gg~~~~~~~~~~~~lG~-~--~~ 117 (227)
T 2abw_A 62 ---------------------AYENDTLYNALVHFIHVLKKPIWGTCAGCILLSKNVENIKLYSNFGNKFSFGG-L--DI 117 (227)
T ss_dssp ---------------------THHHHHHHHHHHHHHHTSCCCEEEETHHHHHTEEEEECCCSCCTTGGGSCCCC-E--EE
T ss_pred ---------------------HHhHHHHHHHHHHHHHhcCCEEEEECHHHHHHHHHhcCCccccccccccccCc-e--eE
Confidence 111 1225788888899 99999999999999999998752210 112220 0 00
Q ss_pred ceeecccCCCCCce--eEEEEcCCCcchhhhhccccccceEEEEecccchhhccc-CCCeEEEEEcC-----CCcEEEEE
Q 017539 162 RVVHIDYDNYDGHR--HVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRL-AQRFVPMAFAP-----DGLIEGFY 233 (369)
Q Consensus 162 ~v~H~~~~~~~~~~--~~V~i~~~s~L~~~~~~~~~~~~~~~~vns~H~~~V~~L-~~g~~vlA~s~-----dg~Veaie 233 (369)
.+.+... .+.... +.+.+ ++-. ...+ +.+.+...|.+.|..+ |++++++|+++ ++.++|++
T Consensus 118 ~~~~~~~-g~~~~~~~~~~~~-~~~~--~~~g-------~~~~~~~~h~~~v~~~~~~~~~vla~~~~~~~g~~~~~a~~ 186 (227)
T 2abw_A 118 TICRNFY-GSQNDSFICSLNI-ISDS--SAFK-------KDLTAACIRAPYIREILSDEVKVLATFSHESYGPNIIAAVE 186 (227)
T ss_dssp EEECCC-----CCEEEEECEE-CCCC--TTCC-------TTCEEEEESCCEEEEECCTTCEEEEEEEETTTEEEEEEEEE
T ss_pred EEEecCC-Ccccccccccccc-cccc--ccCC-------CceeEEEEEcceEeecCCCCcEEEEEcccccCCCCceEEEE
Confidence 0000000 000000 11111 1100 0001 1233334567777777 99999999996 68899998
Q ss_pred eCCCCCCCCCCcEEEEcccCCccCCCCCCCCCCCCchHHHHHHHHHHHHHHHh
Q 017539 234 DPDAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAVIAYQKK 286 (369)
Q Consensus 234 ~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~~~~~~~~lf~~Fv~a~~~~~~~ 286 (369)
.+ +++|+|||||.+.. ..+|++|+++|+++...
T Consensus 187 ~~---------~v~gvQfHPE~~~~-----------~~l~~~Fl~~~~~~~~~ 219 (227)
T 2abw_A 187 QN---------NCLGTVFHPELLPH-----------TAFQQYFYEKVKNYKYS 219 (227)
T ss_dssp ET---------TEEEESSCGGGSSC-----------CHHHHHHHHHHHHHHHH
T ss_pred EC---------CEEEEEECCeeCCC-----------cHHHHHHHHHHHhhhcc
Confidence 63 59999999998742 38999999998765443
No 32
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=99.89 E-value=9e-24 Score=191.59 Aligned_cols=188 Identities=17% Similarity=0.242 Sum_probs=115.9
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChh
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPE 90 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~ 90 (369)
.+|+|+.... .++ .+++++++++|+.+++++.. + .++.+||||||||.+..+.
T Consensus 3 ~~I~iid~~~---~~~-----~~~~~~l~~~G~~~~~~~~~---~----~l~~~d~lil~G~g~~~~~------------ 55 (200)
T 1ka9_H 3 MKALLIDYGS---GNL-----RSAAKALEAAGFSVAVAQDP---K----AHEEADLLVLPGQGHFGQV------------ 55 (200)
T ss_dssp CEEEEECSSC---SCH-----HHHHHHHHHTTCEEEEESST---T----SCSSCSEEEECCCSCHHHH------------
T ss_pred cEEEEEeCCC---ccH-----HHHHHHHHHCCCeEEEecCh---H----HcccCCEEEECCCCcHHHH------------
Confidence 4788884321 111 34689999999999998742 1 2457999999985432110
Q ss_pred HHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHH---hCCeeeeccchhhhccCCCC--cceee
Q 017539 91 ELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVA---CGGTLYQDIEKEVSRKCPEN--QRVVH 165 (369)
Q Consensus 91 ~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a---~GG~l~~~~~~e~g~~~~~~--~~v~H 165 (369)
..++ ++..+..+++++.+.++|+||||+|||+|+.+ +|+ +++.. .+....... .+.+|
T Consensus 56 -~~~l-------------~~~~~~~~i~~~~~~~~PilGIC~G~Qll~~~~~~~Gg--~~~l~-~~~g~v~~~~~~~~~~ 118 (200)
T 1ka9_H 56 -MRAF-------------QESGFVERVRRHLERGLPFLGICVGMQVLYEGSEEAPG--VRGLG-LVPGEVRRFRAGRVPQ 118 (200)
T ss_dssp -HHTT-------------SSSCTHHHHHHHHHTTCCEEECTHHHHTTSSEETTSTT--CCCCC-SSSSEEEECCSSSSSE
T ss_pred -HHHH-------------HhcCHHHHHHHHHHcCCeEEEEcHHHHHHHHhccccCC--cCCcc-ccccEEEECCCCCCCc
Confidence 0111 11123578888889999999999999999999 575 44431 110000000 01234
Q ss_pred cccCCCCCceeEEEEcCCCcchhhhhccccccceEEEEecccchhhcccCCCeEEEEEcCC-C-cEEEEEeCCCCCCCCC
Q 017539 166 IDYDNYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKRLAQRFVPMAFAPD-G-LIEGFYDPDAYNPAEG 243 (369)
Q Consensus 166 ~~~~~~~~~~~~V~i~~~s~L~~~~~~~~~~~~~~~~vns~H~~~V~~L~~g~~vlA~s~d-g-~Veaie~~~~~~~~~~ 243 (369)
.+ ++.+.+.+ + +..+. +...+++|++|. .+ +++ .+ |+++| | .++++.++
T Consensus 119 ~G-------~~~v~~~~-~-l~~~~------~~~~~~~Hs~~~-~~---~~~-~v-a~s~~~g~~~~~~~~~-------- 169 (200)
T 1ka9_H 119 MG-------WNALEFGG-A-FAPLT------GRHFYFANSYYG-PL---TPY-SL-GKGEYEGTPFTALLAK-------- 169 (200)
T ss_dssp EE-------EEECEECG-G-GGGGT------TCEEEEEESEEC-CC---CTT-CC-EEEEETTEEEEEEEEC--------
T ss_pred ee-------EEEEEech-h-hhcCC------CCCEEEeccccc-CC---CCC-cE-EEEEeCCeEEEEEEee--------
Confidence 33 56777765 4 33222 123466777776 43 444 56 88887 7 67888775
Q ss_pred CcEEEEcccCCccCCCCCCCCCCCCchHHH---HHHHHHH
Q 017539 244 KFIMGLQFHPERMRRPDSDEFDYPGCPSAY---QEFVKAV 280 (369)
Q Consensus 244 ~~i~GvQFHPE~~~~~~~~~~~~~~~~~lf---~~Fv~a~ 280 (369)
.+++|+|||||++.. . ..++| ++|++.|
T Consensus 170 ~~i~gvQfHPE~~~~-~--------g~~l~~~~~~F~~~~ 200 (200)
T 1ka9_H 170 ENLLAPQFHPEKSGK-A--------GLAFLALARRYFEVL 200 (200)
T ss_dssp SSEEEESSCTTSSHH-H--------HHHHHHHHHHHC---
T ss_pred CCEEEEecCCCcCcc-c--------hhHHHHHHHHHHhhC
Confidence 489999999999862 2 25899 9998764
No 33
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=99.88 E-value=3.4e-24 Score=222.64 Aligned_cols=200 Identities=17% Similarity=0.156 Sum_probs=130.6
Q ss_pred CCcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCC
Q 017539 9 ILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLS 88 (369)
Q Consensus 9 ~~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~ 88 (369)
.+|+|+|+..... . . ..|+++++++|+.+++++.. +. ..++.+||||||||++.++ +.
T Consensus 3 ~m~~I~Iid~~~g---~----~-~~~~~~l~~~G~~~~vv~~~---~~--~~l~~~DglILpGgG~~~~--~~------- 60 (555)
T 1jvn_A 3 HMPVVHVIDVESG---N----L-QSLTNAIEHLGYEVQLVKSP---KD--FNISGTSRLILPGVGNYGH--FV------- 60 (555)
T ss_dssp SSCEEEEECCSCS---C----C-HHHHHHHHHTTCEEEEESSG---GG--CCSTTCSCEEEEECSCHHH--HH-------
T ss_pred CCCEEEEEECCCC---C----H-HHHHHHHHHCCCEEEEECCc---cc--cccccCCEEEECCCCchHh--Hh-------
Confidence 3689999964311 1 1 36889999999999998732 22 2355799999998643221 10
Q ss_pred hhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHh--CCeeeeccchhhhcc---CCC-Ccc
Q 017539 89 PEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVAC--GGTLYQDIEKEVSRK---CPE-NQR 162 (369)
Q Consensus 89 ~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~--GG~l~~~~~~e~g~~---~~~-~~~ 162 (369)
.+++ +.....+++.+++.++|+||||+|||+|+.++ ||. ++++. .++.. ++. ..+
T Consensus 61 ----~~l~-------------~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~a~~egg~-~~~Lg-~lgg~v~~~~~~~~~ 121 (555)
T 1jvn_A 61 ----DNLF-------------NRGFEKPIREYIESGKPIMGIXVGLQALFAGSVESPK-STGLN-YIDFKLSRFDDSEKP 121 (555)
T ss_dssp ----HHHH-------------HTTCHHHHHHHHHTTCCEEEEEHHHHTTEEEETTBTT-CCCCC-SEEEEEEECCTTTSC
T ss_pred ----hhhh-------------hccHHHHHHHHHHcCCcEEEEchhhhhhhhhhhcCCC-ccccC-CCCcEEEECCcCCCC
Confidence 1111 11125788888899999999999999999988 221 23221 01100 000 113
Q ss_pred eeecccCCCCCceeEEEEcCCCcchhhhhccccccceEEEEecccchhhcc----cCCCeEEEEEcC---CCcEEEEEeC
Q 017539 163 VVHIDYDNYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHHQGVKR----LAQRFVPMAFAP---DGLIEGFYDP 235 (369)
Q Consensus 163 v~H~~~~~~~~~~~~V~i~~~s~L~~~~~~~~~~~~~~~~vns~H~~~V~~----L~~g~~vlA~s~---dg~Veaie~~ 235 (369)
++|++| +.+.+. +++++.++. ....+++||+|++.++. ||+++.++|+++ |+.+++++.
T Consensus 122 ~~~~G~-------~~v~~~--~~L~~~l~~----~~~~~~vHS~~~~~i~~~~~~L~~g~~vlA~s~~~~D~~i~ai~~- 187 (555)
T 1jvn_A 122 VPEIGW-------NSCIPS--ENLFFGLDP----YKRYYFVHSFAAILNSEKKKNLENDGWKIAKAKYGSEEFIAAVNK- 187 (555)
T ss_dssp SSEEEE-------ECCCCC--TTCCTTCCT----TSCEEEEESEECBCCHHHHHHHHHTTCEEEEEEETTEEEEEEEEE-
T ss_pred Cccccc-------eEEEEc--CHHHhhCCC----CceEEEEEEEEEEecccccccCCCCCEEEEEEcCCCCCeEEEEEe-
Confidence 455544 444443 666666542 12467899999998765 377888999887 578999995
Q ss_pred CCCCCCCCCcEEEEcccCCccCCCCCCCCCCCCchHHHHHHHHHH
Q 017539 236 DAYNPAEGKFIMGLQFHPERMRRPDSDEFDYPGCPSAYQEFVKAV 280 (369)
Q Consensus 236 ~~~~~~~~~~i~GvQFHPE~~~~~~~~~~~~~~~~~lf~~Fv~a~ 280 (369)
.+++|+|||||.+.. . ..++|++|+++.
T Consensus 188 --------~~i~GvQFHPE~s~~-~--------g~~l~~~Fl~~~ 215 (555)
T 1jvn_A 188 --------NNIFATQFHPEKSGK-A--------GLNVIENFLKQQ 215 (555)
T ss_dssp --------TTEEEESSBGGGSHH-H--------HHHHHHHHHTTC
T ss_pred --------CCEEEEEeCcEecCh-h--------HHHHHHHHHhcc
Confidence 469999999997642 1 258999999864
No 34
>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A
Probab=99.69 E-value=6.3e-16 Score=148.86 Aligned_cols=137 Identities=14% Similarity=0.092 Sum_probs=95.9
Q ss_pred CCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHh
Q 017539 62 EPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVAC 141 (369)
Q Consensus 62 ~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~ 141 (369)
+.+||+|++||+- ....|++.+. + .-+..+++++.+.++|+||||+|+|++..++
T Consensus 98 ~~~DglIITGap~-~~~~~ed~~y---------w---------------~el~~li~~~~~~~~~~lgIC~GaQ~~l~~~ 152 (301)
T 2vdj_A 98 EKFDGLIITGAPV-ETLSFEEVDY---------W---------------EELKRIMEYSKTNVTSTLHICWGAQAGLYHH 152 (301)
T ss_dssp SCEEEEEECCCTT-TTSCGGGSTT---------H---------------HHHHHHHHHHHHHEEEEEEETHHHHHHHHHH
T ss_pred cccCEEEECCCCC-cCCCcccCch---------H---------------HHHHHHHHHHHHcCCcEEEEcHHHHHHHHHh
Confidence 5799999999972 2223444332 1 1135788899899999999999999977666
Q ss_pred CC-eeeeccchhhhccCCCCcceeecccCCCCCceeEEEEc-CCCcchhhhhccccccceEEEEecc-----cchhhccc
Q 017539 142 GG-TLYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVV-KDTPLHDWFKDSLEEEKMEIWVNSY-----HHQGVKRL 214 (369)
Q Consensus 142 GG-~l~~~~~~e~g~~~~~~~~v~H~~~~~~~~~~~~V~i~-~~s~L~~~~~~~~~~~~~~~~vns~-----H~~~V~~L 214 (369)
|| ..+....+++| ..++++. +.+++++.+++ .|.+..+ |.+.|.++
T Consensus 153 ~G~~k~~~~~K~~G--------------------v~~~~~~~~~~pL~~g~~~-------~f~~phsr~~~~~~~~v~~~ 205 (301)
T 2vdj_A 153 YGVQKYPLKEKMFG--------------------VFEHEVREQHVKLLQGFDE-------LFFAVHSRHTEVRESDIREV 205 (301)
T ss_dssp HCCCCEEEEEEEEE--------------------EEEEEECCSSCGGGTTCCS-------EEEEEEEEEEECCHHHHHTC
T ss_pred CCCccccCCCCEEE--------------------EEEEEecCCCCccccCCCC-------ceEeeeEeccCcCHHHccCC
Confidence 66 33332223443 2333433 35778777753 5555554 44667777
Q ss_pred CCCeEEEEEcCCCcEEEEEeCCCCCCCCCCcEEEEcccCCccCC
Q 017539 215 AQRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMRR 258 (369)
Q Consensus 215 ~~g~~vlA~s~dg~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~ 258 (369)
| +++++|.|+.+.++++..++ ..++|+|||||++..
T Consensus 206 p-ga~vLA~S~~~~~~~~~~~~-------~~~~~vQgHpEyd~~ 241 (301)
T 2vdj_A 206 K-ELTLLANSEEAGVHLVIGQE-------GRQVFALGHSEYSCD 241 (301)
T ss_dssp T-TEEEEEEETTTEEEEEEEGG-------GTEEEECSCTTCCTT
T ss_pred C-CCEEEEeCCCCcceEEEecC-------CCEEEEECCCCCCHH
Confidence 5 99999999999999999864 579999999999763
No 35
>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}
Probab=99.68 E-value=7.2e-16 Score=148.94 Aligned_cols=137 Identities=14% Similarity=0.089 Sum_probs=95.7
Q ss_pred CCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHh
Q 017539 62 EPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVAC 141 (369)
Q Consensus 62 ~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~ 141 (369)
+.+||+|++||+- ....|++.+. + .-+..+++++.+.++|+||||+|+|++..++
T Consensus 110 ~~~DglIITGsP~-~~~~~ed~~y---------w---------------~el~~li~~~~~~~~p~LGIC~GaQ~~l~~~ 164 (312)
T 2h2w_A 110 RKFDGFIITGAPV-ELLPFEEVDY---------W---------------EELTEIMEWSRHNVYSTMFICWAAQAGLYYF 164 (312)
T ss_dssp CCEEEEEECCCSC-TTSCGGGSTT---------H---------------HHHHHHHHHHHHHEEEEEEETHHHHHHHHHH
T ss_pred cCcCEEEECCCCC-CCCCCccCch---------H---------------HHHHHHHHHHHHcCCcEEEECHHHHHHHHHh
Confidence 5799999999972 2223444432 1 1135788889899999999999999977777
Q ss_pred CCe-eeeccchhhhccCCCCcceeecccCCCCCceeEEEEcCCCcchhhhhccccccceEEEEecccc-----hhhcccC
Q 017539 142 GGT-LYQDIEKEVSRKCPENQRVVHIDYDNYDGHRHVVKVVKDTPLHDWFKDSLEEEKMEIWVNSYHH-----QGVKRLA 215 (369)
Q Consensus 142 GG~-l~~~~~~e~g~~~~~~~~v~H~~~~~~~~~~~~V~i~~~s~L~~~~~~~~~~~~~~~~vns~H~-----~~V~~L~ 215 (369)
||. .+....+++| ..++.+...+++++.+++ .|.+..+|+ +.|..+
T Consensus 165 ~G~~k~~~~~K~~G--------------------v~~~~~~~~~pL~~g~~~-------~f~vphsr~~e~~~~~v~~~- 216 (312)
T 2h2w_A 165 YGIPKYELPQKLSG--------------------VYKHRVAKDSVLFRGHDD-------FFWAPHSRYTEVKKEDIDKV- 216 (312)
T ss_dssp HCCCCEEEEEEEEE--------------------EEEEEESSCCGGGTTCCS-------EEEEEEEEEEECCHHHHTTC-
T ss_pred CCCccccCCCCEEE--------------------EEEEEEcCCCccccCCCC-------ceEeeEEeccccCHHHccCC-
Confidence 663 3322223443 345566667788877753 566665533 334544
Q ss_pred CCeEEEEEcCCCcEEEEEeCCCCCCCCCCcEEEEcccCCccCC
Q 017539 216 QRFVPMAFAPDGLIEGFYDPDAYNPAEGKFIMGLQFHPERMRR 258 (369)
Q Consensus 216 ~g~~vlA~s~dg~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~ 258 (369)
++++++|.|+.+.++++..++ ..++|+|||||++..
T Consensus 217 pga~vLA~S~~~~~q~~~~~~-------~~~~~vQgHPEyd~~ 252 (312)
T 2h2w_A 217 PELEILAESDEAGVYVVANKS-------ERQIFVTGHPEYDRY 252 (312)
T ss_dssp C-CEEEEEETTTEEEEEECSS-------SSEEEECSCTTCCTT
T ss_pred CCCEEEEcCCCCcceEEEecC-------CCEEEEECCCCCCHH
Confidence 599999999999999999864 579999999999763
No 36
>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*
Probab=99.20 E-value=2.7e-10 Score=127.59 Aligned_cols=215 Identities=15% Similarity=0.164 Sum_probs=118.5
Q ss_pred CCcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCC
Q 017539 9 ILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLS 88 (369)
Q Consensus 9 ~~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~ 88 (369)
.+|+|+|+.-+... ....+.++++.+|+.+++++.. +...-...++.+|||+||||.. |++....
T Consensus 1046 ~~pkVaIi~~~G~N-------~~~~~~~A~~~aG~~~~~v~~~-dl~~~~~~l~~~d~lvlPGGfS-----ygD~l~~-- 1110 (1303)
T 3ugj_A 1046 ARPKVAVLREQGVN-------SHVEMAAAFHRAGFDAIDVHMS-DLLGGRIGLGNFHALVACGGFS-----YGDVLGA-- 1110 (1303)
T ss_dssp CCCEEEEEECTTCC-------CHHHHHHHHHHTTCEEEEEEHH-HHHTTSCCGGGCSEEEECCSCG-----GGGTTST--
T ss_pred CCCEEEEEecCCcC-------CHHHHHHHHHHhCCceEEEeec-ccccCcccHhhCCEEEECCCCc-----chhhhcc--
Confidence 47999999765432 1224678999999999988631 0000112345799999999952 4443210
Q ss_pred hhHHHHHHhhcCCCCccCchhhHHHHHHHHHHH-HcCCCEEEEeHHHHHHHHHh---CCe-----eeeccchhhhccCCC
Q 017539 89 PEELEEIRRLHTSDTAIDKEKDSIELRLAKLCL-ERNIPYLGICRGSQVLNVAC---GGT-----LYQDIEKEVSRKCPE 159 (369)
Q Consensus 89 ~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~-e~~iPiLGIClG~QlL~~a~---GG~-----l~~~~~~e~g~~~~~ 159 (369)
..- | .....++......++.+. +.++|+||||.|||+|+.+- .|. +.++...
T Consensus 1111 g~~--~---------a~~~l~~~~l~~~l~~~~~~~g~pvLGICnG~QlL~e~~gllPg~~~~p~l~~N~s~-------- 1171 (1303)
T 3ugj_A 1111 GEG--W---------AKSILFNHRVRDEFETFFHRPQTLALGVCNGCQMMSNLRELIPGSELWPRFVRNHSD-------- 1171 (1303)
T ss_dssp THH--H---------HHHHHTSHHHHHHHHHHHHSSSCEEEEETHHHHHHHTTGGGSTTCTTCCEEECCTTS--------
T ss_pred chh--H---------HHHHHhchhHHHHHHHHHHhCCCcEEEECHHHHHHHHhcCcCCCCCCCCeEecCCCC--------
Confidence 000 0 001112233344566544 57899999999999999862 221 1111100
Q ss_pred CcceeecccCCCCCceeEEEEcC-CCcchhhhhccccccceEEEEecccchh---------hccc-CCCeEEEEE-----
Q 017539 160 NQRVVHIDYDNYDGHRHVVKVVK-DTPLHDWFKDSLEEEKMEIWVNSYHHQG---------VKRL-AQRFVPMAF----- 223 (369)
Q Consensus 160 ~~~v~H~~~~~~~~~~~~V~i~~-~s~L~~~~~~~~~~~~~~~~vns~H~~~---------V~~L-~~g~~vlA~----- 223 (369)
.| ...+..+++.+ .|++++.+.. ..+.++-.|+.+ .++| .++..++-+
T Consensus 1172 ----~f------~~r~~~~~v~~~~s~~~~~~~g------~~~~i~vaHgEG~~~~~~~~~l~~l~~~~~v~~rY~d~~g 1235 (1303)
T 3ugj_A 1172 ----RF------EARFSLVEVTQSPSLLLQGMVG------SQMPIAVSHGEGRVEVRDDAHLAALESKGLVALRYVDNFG 1235 (1303)
T ss_dssp ----SC------EEEEEEEEECCCSCGGGTTCTT------CEEEEEEEESSCEEECSSHHHHHHHHHTTCEEEEEBCTTS
T ss_pred ----Ce------EEeCeEEEECCCCChhhhccCC------CEEeeeeEeCCCCeeeCCHHHHHHHHhCCcEEEEEeCCCC
Confidence 01 11234455543 4666666632 344544455432 1111 234444444
Q ss_pred --------cCCC---cEEEEEeCCCCCCCCCCcEEEEcccCCccCCCCCC-----C-CCCCCchHHHHHHHHHH
Q 017539 224 --------APDG---LIEGFYDPDAYNPAEGKFIMGLQFHPERMRRPDSD-----E-FDYPGCPSAYQEFVKAV 280 (369)
Q Consensus 224 --------s~dg---~Veaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~-----~-~~~~~~~~lf~~Fv~a~ 280 (369)
+++| -|++|-.++ .+++|+..||||...+.-. + -+.....++|++-.++|
T Consensus 1236 ~~~~~yp~NPNGS~~~IaGi~s~~-------Grvlg~MpHPEr~~~~~~~~~~p~~~~~~~pw~~~F~na~~w~ 1302 (1303)
T 3ugj_A 1236 KVTETYPANPNGSPNGITAVTTEN-------GRVTIMMPHPERVFRTVANSWHPENWGEDSPWMRIFRNARKQL 1302 (1303)
T ss_dssp CBCCSTTTSSSCCGGGEEEEECTT-------SSEEEESSBGGGSSBGGGCSSCCTTCCSBCTTHHHHHHHHHHH
T ss_pred CcccCCCCCCCCChhhceEeECCC-------CCEEEEcCChHHccccccccCCCcccCCCCcHHHHHHHHHHhc
Confidence 3566 599999987 7899999999997542211 0 11234556776655443
No 37
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.42 E-value=2.5e-07 Score=84.19 Aligned_cols=101 Identities=13% Similarity=0.105 Sum_probs=65.4
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCC-CChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRV-SGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLS 88 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~-~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~ 88 (369)
-|+|+++..-+.. ... +....++.+++++.|+.+.++... .+.++..+.+...|+|+++||.-.
T Consensus 27 ~~~i~~Ip~As~~-~~~-~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~ad~I~l~GG~~~------------- 91 (206)
T 3l4e_A 27 GKTVTFIPTASTV-EEV-TFYVEAGKKALESLGLLVEELDIATESLGEITTKLRKNDFIYVTGGNTF------------- 91 (206)
T ss_dssp TCEEEEECGGGGG-CSC-CHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHHSSEEEECCSCHH-------------
T ss_pred CCEEEEECCCCCC-CCH-HHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHhCCEEEECCCCHH-------------
Confidence 3788888644321 011 222345678999999998877422 244444455667999999998410
Q ss_pred hhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHH
Q 017539 89 PEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNV 139 (369)
Q Consensus 89 ~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~ 139 (369)
.-+..+ ++......++.+.++++|++|||.|+|+++.
T Consensus 92 -~l~~~L-------------~~~gl~~~l~~~~~~G~p~~G~sAGa~~l~~ 128 (206)
T 3l4e_A 92 -FLLQEL-------------KRTGADKLILEEIAAGKLYIGESAGAVITSP 128 (206)
T ss_dssp -HHHHHH-------------HHHTHHHHHHHHHHTTCEEEEETHHHHTTSS
T ss_pred -HHHHHH-------------HHCChHHHHHHHHHcCCeEEEECHHHHHhcc
Confidence 001112 2223356788888899999999999999975
No 38
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=98.35 E-value=2.2e-07 Score=85.76 Aligned_cols=100 Identities=16% Similarity=0.164 Sum_probs=62.6
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCCh
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSP 89 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~ 89 (369)
.|+|+|+..-... .. .+.-..++.+++++.|+.++.+....+. .+.++.+|+|+|+||.. .
T Consensus 31 ~~~i~iI~~a~~~-~~-~~~~~~~~~~al~~lG~~~~~v~~~~d~---~~~l~~ad~I~lpGG~~---~----------- 91 (229)
T 1fy2_A 31 RRSAVFIPFAGVT-QT-WDEYTDKTAEVLAPLGVNVTGIHRVADP---LAAIEKAEIIIVGGGNT---F----------- 91 (229)
T ss_dssp CCEEEEECTTCCS-SC-HHHHHHHHHHHHGGGTCEEEETTSSSCH---HHHHHHCSEEEECCSCH---H-----------
T ss_pred CCeEEEEECCCCC-CC-HHHHHHHHHHHHHHCCCEEEEEeccccH---HHHHhcCCEEEECCCcH---H-----------
Confidence 5889998643211 11 1222345677888999988877533232 23344699999999841 0
Q ss_pred hHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHh
Q 017539 90 EELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVAC 141 (369)
Q Consensus 90 ~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~ 141 (369)
.-+..+++ .-....++.++++++|++|||.|||+|+...
T Consensus 92 ~~~~~l~~-------------~gl~~~l~~~~~~G~p~~G~sAG~~~l~~~~ 130 (229)
T 1fy2_A 92 QLLKESRE-------------RGLLAPMADRVKRGALYIGWSAGANLACPTI 130 (229)
T ss_dssp HHHHHHHH-------------TTCHHHHHHHHHTTCEEEEETHHHHHTSSBS
T ss_pred HHHHHHHH-------------CChHHHHHHHHHcCCEEEEECHHHHhhcccc
Confidence 01122221 1124677888888999999999999998743
No 39
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=97.75 E-value=7.8e-05 Score=66.33 Aligned_cols=98 Identities=16% Similarity=0.218 Sum_probs=61.1
Q ss_pred CCcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCCh---------h-----hhhh-hcCCCCEEEECCCC
Q 017539 9 ILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGV---------H-----MLLD-SFEPIHGVLLCEGE 73 (369)
Q Consensus 9 ~~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~---------~-----~l~~-~l~~~DGlll~GG~ 73 (369)
.+.+|+|+...... ..--..-.+.+..+|..+.++....++ . .+.+ ..+.+|+||+|||.
T Consensus 22 ~~~kV~ill~~g~~-----~~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~~v~~~~~l~~~~~~~~D~livpGG~ 96 (193)
T 1oi4_A 22 LSKKIAVLITDEFE-----DSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGH 96 (193)
T ss_dssp CCCEEEEECCTTBC-----THHHHHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEEECCBT
T ss_pred cCCEEEEEECCCCC-----HHHHHHHHHHHHHCCCEEEEEECCCCcceecCCCCeEEECCCChHHCCcccCCEEEECCCc
Confidence 34678888654211 111123456788899998877643321 0 1111 12368999999994
Q ss_pred CCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHH
Q 017539 74 DIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (369)
Q Consensus 74 didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a 140 (369)
+ +. . ...+.....+++++.++++||.|||.|.|+|+.+
T Consensus 97 ~--~~---~------------------------l~~~~~l~~~l~~~~~~gk~i~aIC~G~~lLa~a 134 (193)
T 1oi4_A 97 S--PD---Y------------------------LRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISA 134 (193)
T ss_dssp H--HH---H------------------------HTTSHHHHHHHHHHHHTTCCEEEETTTHHHHHHH
T ss_pred C--HH---H------------------------hhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHC
Confidence 2 10 0 0011234578888889999999999999999987
No 40
>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}
Probab=97.40 E-value=0.00059 Score=60.24 Aligned_cols=103 Identities=15% Similarity=0.177 Sum_probs=63.5
Q ss_pred CCCCCCCcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCC-----------hh-hhhh-hcCCCCEEEEC
Q 017539 4 HDLSVILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSG-----------VH-MLLD-SFEPIHGVLLC 70 (369)
Q Consensus 4 ~~~~~~~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~-----------~~-~l~~-~l~~~DGlll~ 70 (369)
+-|...+.+|+|+....-.. ..++ .-++.++++|..+.++..... ++ .+.+ ..+.+|+|++|
T Consensus 2 ~~m~~t~~~v~il~~~gFe~---~E~~--~p~~~l~~ag~~V~~~s~~~~~v~~~~G~~v~~d~~l~~v~~~~yD~liiP 76 (177)
T 4hcj_A 2 NAMGKTNNILYVMSGQNFQD---EEYF--ESKKIFESAGYKTKVSSTFIGTAQGKLGGMTNIDLLFSEVDAVEFDAVVFV 76 (177)
T ss_dssp ---CCCCEEEEECCSEEECH---HHHH--HHHHHHHHTTCEEEEEESSSEEEEETTSCEEEECEEGGGCCGGGCSEEEEC
T ss_pred CccccCCCEEEEECCCCccH---HHHH--HHHHHHHHCCCEEEEEECCCCeEeeCCCCEEecCccHHHCCHhHCCEEEEC
Confidence 34777778888886442111 1122 234668899999987754211 11 1111 12468999999
Q ss_pred CCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHH
Q 017539 71 EGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (369)
Q Consensus 71 GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a 140 (369)
||.+ +... ..+.....+++++.++++||.+||-|-++|+.+
T Consensus 77 GG~g--~~~l---------------------------~~~~~~~~~l~~~~~~~k~iaaIC~g~~~La~a 117 (177)
T 4hcj_A 77 GGIG--CITL---------------------------WDDWRTQGLAKLFLDNQKIVAGIGSGVVIMANA 117 (177)
T ss_dssp CSGG--GGGG---------------------------TTCHHHHHHHHHHHHTTCEEEEETTHHHHHHHT
T ss_pred CCcc--HHHH---------------------------hhCHHHHHHHHHHHHhCCEEEEecccHHHHHHC
Confidence 9953 1110 012223578899999999999999999999875
No 41
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=97.08 E-value=0.0011 Score=60.59 Aligned_cols=31 Identities=16% Similarity=0.076 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHcCCCEEEEeHHHHHHHHHhC
Q 017539 112 IELRLAKLCLERNIPYLGICRGSQVLNVACG 142 (369)
Q Consensus 112 ~e~~li~~~~e~~iPiLGIClG~QlL~~a~G 142 (369)
....+++++.++++||.+||-|-++|+.++.
T Consensus 121 ~l~~~l~~~~~~gk~vaaIC~G~~~La~aL~ 151 (232)
T 1vhq_A 121 ELKALAQAMHQAGKPLGFMCIAPAMLPKIFD 151 (232)
T ss_dssp HHHHHHHHHHHTTCCEEEETTGGGGHHHHCS
T ss_pred HHHHHHHHHHHcCCEEEEECHHHHHHHHHhc
Confidence 3467889999999999999999999998854
No 42
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...
Probab=96.83 E-value=0.0025 Score=56.49 Aligned_cols=79 Identities=18% Similarity=0.135 Sum_probs=51.9
Q ss_pred HHHHHHHCCCEEEEEcCCCC------------hh-hhhhh--cCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhh
Q 017539 34 HLDLIVGYGAVPAIVPRVSG------------VH-MLLDS--FEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRL 98 (369)
Q Consensus 34 ~l~~l~~~Ga~~vivp~~~~------------~~-~l~~~--l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~ 98 (369)
-++.+..+|..+.++..... .+ .+.+. ...+|.|++|||.. .+ .
T Consensus 22 ~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~v~~d~~l~~~~~~~~~D~livpGG~~-~~--~------------------ 80 (197)
T 2rk3_A 22 PVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNL-GA--Q------------------ 80 (197)
T ss_dssp HHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHTTCCCSEEEECCCHH-HH--H------------------
T ss_pred HHHHHHHCCCEEEEEEcCCCCccccCCCCEEeCCcCHHHcCCccCCCEEEECCCch-hH--H------------------
Confidence 45678888988887754321 11 11221 25799999999941 00 0
Q ss_pred cCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHH
Q 017539 99 HTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (369)
Q Consensus 99 ~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a 140 (369)
+...+.....+++++.++++||.+||-|.++|+.+
T Consensus 81 -------~l~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~a 115 (197)
T 2rk3_A 81 -------NLSESAAVKEILKEQENRKGLIATICAGPTALLAH 115 (197)
T ss_dssp -------HHHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred -------HhhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHC
Confidence 00112334578888889999999999999999975
No 43
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A
Probab=96.83 E-value=0.0029 Score=54.37 Aligned_cols=96 Identities=21% Similarity=0.344 Sum_probs=58.2
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCC-----------hh-hhhhh-cCCCCEEEECCCCCCCC
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSG-----------VH-MLLDS-FEPIHGVLLCEGEDIDP 77 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~-----------~~-~l~~~-l~~~DGlll~GG~didp 77 (369)
.+|+|+....... .++ ..-++.++.+|..+.++..... .+ .+.+. ...+|.|++|||.+ +
T Consensus 3 ~ki~il~~~g~~~---~e~--~~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~--~ 75 (168)
T 3l18_A 3 MKVLFLSADGFED---LEL--IYPLHRIKEEGHEVYVASFQRGKITGKHGYSVNVDLTFEEVDPDEFDALVLPGGKA--P 75 (168)
T ss_dssp CEEEEECCTTBCH---HHH--HHHHHHHHHTTCEEEEEESSSEEEECTTSCEEEECEEGGGCCGGGCSEEEECCBSH--H
T ss_pred cEEEEEeCCCccH---HHH--HHHHHHHHHCCCEEEEEECCCCEEecCCCcEEeccCChhHCCHhhCCEEEECCCcC--H
Confidence 3677775442211 111 2345677889998887754321 00 11111 12599999999952 1
Q ss_pred CCccccCCCCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHH
Q 017539 78 SLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (369)
Q Consensus 78 ~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a 140 (369)
.. ...+.....+++.+.++++||.+||-|.++|+.+
T Consensus 76 ~~---------------------------~~~~~~l~~~l~~~~~~~k~i~aiC~G~~~La~a 111 (168)
T 3l18_A 76 EI---------------------------VRLNEKAVMITRRMFEDDKPVASICHGPQILISA 111 (168)
T ss_dssp HH---------------------------HTTCHHHHHHHHHHHHTTCCEEEETTTHHHHHHT
T ss_pred HH---------------------------hccCHHHHHHHHHHHHCCCEEEEECHhHHHHHHC
Confidence 00 0011233578888899999999999999999975
No 44
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}
Probab=96.79 E-value=0.0048 Score=57.07 Aligned_cols=29 Identities=10% Similarity=0.088 Sum_probs=26.0
Q ss_pred HHHHHHHHHHcCCCEEEEeHHHHHHHHHh
Q 017539 113 ELRLAKLCLERNIPYLGICRGSQVLNVAC 141 (369)
Q Consensus 113 e~~li~~~~e~~iPiLGIClG~QlL~~a~ 141 (369)
...+++.+.++++||.+||-|..+|+.+-
T Consensus 140 l~~~lr~~~~~gk~IaaIC~G~~~La~ag 168 (242)
T 3l3b_A 140 FKNAVREFYNAKKPIGAVCISPAVVVALL 168 (242)
T ss_dssp HHHHHHHHHHTTCCEEEETTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCEEEEECHHHHHHHHhC
Confidence 45788999999999999999999999875
No 45
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=96.78 E-value=0.0036 Score=54.87 Aligned_cols=96 Identities=17% Similarity=0.308 Sum_probs=57.2
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCC----------------hh-hhhhh-cCCCCEEEECCC
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSG----------------VH-MLLDS-FEPIHGVLLCEG 72 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~----------------~~-~l~~~-l~~~DGlll~GG 72 (369)
.+|+|+...... ..++ ..-++.+..+|..+.++..... .+ .+.+. ...+|+||+|||
T Consensus 10 ~~v~il~~~g~~---~~e~--~~~~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~g~~v~~~~~~~~~~~~~~D~livpGG 84 (190)
T 2vrn_A 10 KKIAILAADGVE---EIEL--TSPRAAIEAAGGTTELISLEPGEIQSMKGDIEPQEKYRVDHVVSEVQVSDYDGLLLPGG 84 (190)
T ss_dssp CEEEEECCTTCB---HHHH--HHHHHHHHHTTCEEEEEESSSSEEEEEETTTEEEEEEECSEEGGGCCGGGCSEEEECCC
T ss_pred CEEEEEeCCCCC---HHHH--HHHHHHHHHCCCEEEEEecCCCccccccccccCCcEEeCCCChhhCChhhCCEEEECCC
Confidence 578887543211 1111 1235667888988877654321 00 11111 136899999999
Q ss_pred C-CCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHH
Q 017539 73 E-DIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (369)
Q Consensus 73 ~-didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a 140 (369)
. +.. . ...+.-...+++++.++++||.+||-|.++|+.+
T Consensus 85 ~~~~~----~-------------------------~~~~~~l~~~l~~~~~~gk~i~aiC~G~~~La~a 124 (190)
T 2vrn_A 85 TVNPD----K-------------------------LRLEEGAMKFVRDMYDAGKPIAAICHGPWSLSET 124 (190)
T ss_dssp THHHH----H-------------------------HTTCHHHHHHHHHHHHTTCCEEEC-CTTHHHHHT
T ss_pred chhHH----H-------------------------HhhCHHHHHHHHHHHHcCCEEEEECHhHHHHHhC
Confidence 4 210 0 0012234578888889999999999999999985
No 46
>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2
Probab=96.66 E-value=0.0051 Score=53.99 Aligned_cols=95 Identities=13% Similarity=0.029 Sum_probs=56.5
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHH-CCCEEEEEcCCCC-----------hh-hhhhh-cCCCCEEEECCCCCCC
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVG-YGAVPAIVPRVSG-----------VH-MLLDS-FEPIHGVLLCEGEDID 76 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~-~Ga~~vivp~~~~-----------~~-~l~~~-l~~~DGlll~GG~did 76 (369)
.+|+|+.-..... .++. .-++.+.. .|..+.++..... .+ .+.+. .+.+|+|++|||....
T Consensus 2 ~~i~ill~~g~~~---~e~~--~~~~~l~~a~~~~v~~vs~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~~~ 76 (188)
T 2fex_A 2 TRIAIALAQDFAD---WEPA--LLAAAARSYLGVEIVHATPDGMPVTSMGGLKVTPDTSYDALDPVDIDALVIPGGLSWE 76 (188)
T ss_dssp CEEEEECCTTBCT---TSSH--HHHHHHHHHSCCEEEEEETTSSCEECTTCCEEECSEEGGGCCTTTCSEEEECCBSHHH
T ss_pred cEEEEEeCCCchH---HHHH--HHHHHHhhcCCceEEEEeCCCCceeeCCCcEEeccccHHHCCcccCCEEEECCCCccc
Confidence 4677775432211 1221 23456666 8888877754321 11 11211 1269999999995211
Q ss_pred CCCccccCCCCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHH
Q 017539 77 PSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (369)
Q Consensus 77 p~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a 140 (369)
. ...+ -...+++++.++++||.+||-|.++|+.+
T Consensus 77 ~---~~~~---------------------------~l~~~l~~~~~~~k~i~aiC~G~~~La~a 110 (188)
T 2fex_A 77 K---GTAA---------------------------DLGGLVKRFRDRDRLVAGICAAASALGGT 110 (188)
T ss_dssp H---TCCC---------------------------CCHHHHHHHHHTTCEEEEETHHHHHHHHT
T ss_pred c---cccH---------------------------HHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence 0 0000 12467888888999999999999999875
No 47
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}
Probab=96.55 E-value=0.007 Score=53.19 Aligned_cols=79 Identities=15% Similarity=0.074 Sum_probs=51.8
Q ss_pred HHHHHHHCCCEEEEEcCCC-Ch-----------h-hhhhh-cCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhc
Q 017539 34 HLDLIVGYGAVPAIVPRVS-GV-----------H-MLLDS-FEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLH 99 (369)
Q Consensus 34 ~l~~l~~~Ga~~vivp~~~-~~-----------~-~l~~~-l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~ 99 (369)
-++.++.+|..+.++.... .+ + .+.+. .+.+|.|++|||.. .+ .
T Consensus 24 ~~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~~~~~~~~D~livpGG~~-~~--~------------------- 81 (190)
T 4e08_A 24 AADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFDVVVLPGGLG-GS--N------------------- 81 (190)
T ss_dssp HHHHHHHTTCEEEEEESSSSSCEECTTSCEEECSEETGGGTTCCCSEEEECCCHH-HH--H-------------------
T ss_pred HHHHHHHCCCEEEEEECCCCcceecCCCcEEECCCCHHHCCcccCCEEEECCCCh-HH--H-------------------
Confidence 4567888999988876443 10 0 12221 13589999999931 00 0
Q ss_pred CCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHH
Q 017539 100 TSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (369)
Q Consensus 100 ~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a 140 (369)
+...+.....+++.+.++++||.+||-|.++|+.+
T Consensus 82 ------~~~~~~~~~~~l~~~~~~~k~i~aiC~G~~~La~a 116 (190)
T 4e08_A 82 ------AMGESSLVGDLLRSQESGGGLIAAICAAPTVLAKH 116 (190)
T ss_dssp ------HHHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred ------HhhhCHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence 00112234578888899999999999999999874
No 48
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}
Probab=96.45 E-value=0.015 Score=52.19 Aligned_cols=95 Identities=17% Similarity=0.138 Sum_probs=57.8
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHC-CCEEEEEcCCCC----------h-hhhhhhcCCCCEEEECCCCCCCC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGY-GAVPAIVPRVSG----------V-HMLLDSFEPIHGVLLCEGEDIDP 77 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~-Ga~~vivp~~~~----------~-~~l~~~l~~~DGlll~GG~didp 77 (369)
+++|+|+.-..... .++. .-.+.+.++ |..+.++..... . ..+.+..+.+|.|++|||.+ +
T Consensus 3 m~kV~ill~~g~~~---~E~~--~~~~~l~~~~~~~v~~vs~~~~V~~~~G~~v~~d~~l~~~~~~~D~livpGG~~--~ 75 (206)
T 3f5d_A 3 LKKALFLILDQYAD---WEGV--YLASALNQREDWSVHTVSLDPIVSSIGGFKTSVDYIIGLEPANFNLLVMIGGDS--W 75 (206)
T ss_dssp CEEEEEECCSSBCT---TTSH--HHHHHHHTSTTEEEEEEESSSEEEBTTSCEEECSEETTSSCSCCSEEEECCBSC--C
T ss_pred ccEEEEEEcCCCcH---HHHH--HHHHHHhccCCeEEEEEECCCCEEecCCcEEecCcChhhCCcCCCEEEEcCCCC--h
Confidence 46788875443211 1221 234556666 777766643211 0 11222223699999999963 2
Q ss_pred CCccccCCCCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHH
Q 017539 78 SLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (369)
Q Consensus 78 ~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a 140 (369)
.. .+.....+++++.++++||.+||-|-++|+.+
T Consensus 76 ~~-----------------------------~~~~l~~~l~~~~~~gk~iaaiC~G~~~La~a 109 (206)
T 3f5d_A 76 SN-----------------------------DNKKLLHFVKTAFQKNIPIAAICGAVDFLAKN 109 (206)
T ss_dssp CC-----------------------------CCHHHHHHHHHHHHTTCCEEEETHHHHHHHHT
T ss_pred hh-----------------------------cCHHHHHHHHHHHHcCCEEEEECHHHHHHHHc
Confidence 11 11223577888888999999999999999875
No 49
>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}
Probab=96.31 E-value=0.023 Score=51.02 Aligned_cols=28 Identities=18% Similarity=0.157 Sum_probs=24.6
Q ss_pred HHHHHHHHHHcCCCEEEEeHHHHHHHHH
Q 017539 113 ELRLAKLCLERNIPYLGICRGSQVLNVA 140 (369)
Q Consensus 113 e~~li~~~~e~~iPiLGIClG~QlL~~a 140 (369)
...+++.+.++++||.+||-|-.+|+.+
T Consensus 94 l~~~l~~~~~~gk~iaaiC~G~~~La~a 121 (212)
T 3efe_A 94 ILERIGQALKIGTIVAAICGATDALANM 121 (212)
T ss_dssp HHHHHHHHHHHTCEEEEETHHHHHHHHT
T ss_pred HHHHHHHHHHCCCEEEEEcHHHHHHHHc
Confidence 3578888889999999999999999875
No 50
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=96.24 E-value=0.0094 Score=55.27 Aligned_cols=29 Identities=17% Similarity=0.155 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHcCCCEEEEeHHHHHHHHH
Q 017539 112 IELRLAKLCLERNIPYLGICRGSQVLNVA 140 (369)
Q Consensus 112 ~e~~li~~~~e~~iPiLGIClG~QlL~~a 140 (369)
....+++.+.++++||-+||-|-.+|+.+
T Consensus 126 ~l~~~l~~~~~~gk~iaaIC~Gp~~La~a 154 (247)
T 3n7t_A 126 HLQNIAQDIYKRGGVIGAVCHGPAMLPGI 154 (247)
T ss_dssp HHHHHHHHHHHTTCEEEEETTGGGGGGGC
T ss_pred HHHHHHHHHHHcCCEEEEEChHHHHHHHh
Confidence 34678899999999999999999998765
No 51
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Probab=96.16 E-value=0.004 Score=55.61 Aligned_cols=79 Identities=16% Similarity=0.118 Sum_probs=51.7
Q ss_pred HHHHHHHCCCEEEEEcCCCC--------------hh-hhhhh-cCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHh
Q 017539 34 HLDLIVGYGAVPAIVPRVSG--------------VH-MLLDS-FEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRR 97 (369)
Q Consensus 34 ~l~~l~~~Ga~~vivp~~~~--------------~~-~l~~~-l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~ 97 (369)
-++.+..+|..+.++..... .+ .+.+. .+.+|+||+|||.. .+ .
T Consensus 21 ~~~~l~~ag~~v~~vs~~~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpGG~~-~~--~----------------- 80 (205)
T 2ab0_A 21 TIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIK-GA--E----------------- 80 (205)
T ss_dssp HHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHH-HH--H-----------------
T ss_pred HHHHHHHCCCEEEEEeCCCCCCceeecCCCeEEecCCCHHHCCcccCCEEEECCCcc-cH--H-----------------
Confidence 35678889998887754321 11 12221 24699999999941 00 0
Q ss_pred hcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHH-HHHHHH
Q 017539 98 LHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGS-QVLNVA 140 (369)
Q Consensus 98 ~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~-QlL~~a 140 (369)
+...+.....+++.+.++++||.+||-|. ++|+.+
T Consensus 81 --------~l~~~~~l~~~l~~~~~~gk~i~aiC~G~~~lLa~a 116 (205)
T 2ab0_A 81 --------CFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPH 116 (205)
T ss_dssp --------HHHHCHHHHHHHHHHHHTTCEEEEETHHHHHHTTTT
T ss_pred --------HhccCHHHHHHHHHHHHcCCEEEEECHhHHHHHHHC
Confidence 00112334578888899999999999999 999864
No 52
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=95.86 E-value=0.004 Score=59.27 Aligned_cols=99 Identities=13% Similarity=0.111 Sum_probs=61.9
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCC-EEEEEcCCC----ChhhhhhhcCCCCEEEECCCCCCCCCCccccC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGA-VPAIVPRVS----GVHMLLDSFEPIHGVLLCEGEDIDPSLYEAET 84 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga-~~vivp~~~----~~~~l~~~l~~~DGlll~GG~didp~~y~~~~ 84 (369)
.|+|+++..-+.. .+...+.|.+++++.|+ .+..++... +.+++.+.+...|+|+++||. ...+-
T Consensus 56 ~~~I~~IptAs~~----~~~~~~~~~~~f~~lG~~~v~~L~i~~r~~a~~~~~~~~l~~ad~I~v~GGn---t~~l~--- 125 (291)
T 3en0_A 56 DAIIGIIPSASRE----PLLIGERYQTIFSDMGVKELKVLDIRDRAQGDDSGYRLFVEQCTGIFMTGGD---QLRLC--- 125 (291)
T ss_dssp GCEEEEECTTCSS----HHHHHHHHHHHHHHHCCSEEEECCCCSGGGGGCHHHHHHHHHCSEEEECCSC---HHHHH---
T ss_pred CCeEEEEeCCCCC----hHHHHHHHHHHHHHcCCCeeEEEEecCccccCCHHHHHHHhcCCEEEECCCC---HHHHH---
Confidence 3788888654321 12234557788899999 555665421 122344556689999999993 21111
Q ss_pred CCCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcC-CCEEEEeHHHHHHHH
Q 017539 85 SNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERN-IPYLGICRGSQVLNV 139 (369)
Q Consensus 85 ~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~-iPiLGIClG~QlL~~ 139 (369)
..+ ++.-...+|+.+.+++ +|+.|+|-|.-+++.
T Consensus 126 --------~~l-------------~~t~l~~~L~~~~~~G~~~~~GtSAGA~i~~~ 160 (291)
T 3en0_A 126 --------GLL-------------ADTPLMDRIRQRVHNGEISLAGTSAGAAVMGH 160 (291)
T ss_dssp --------HHH-------------TTCHHHHHHHHHHHTTSSEEEEETHHHHTTSS
T ss_pred --------HHH-------------HhCCHHHHHHHHHHCCCeEEEEeCHHHHhhhH
Confidence 111 1223357788888889 999999999887754
No 53
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=95.77 E-value=0.049 Score=57.32 Aligned_cols=102 Identities=12% Similarity=-0.038 Sum_probs=61.0
Q ss_pred EEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCC------hhhhhhhcCCCCEEEECCCCCCCCCCccccCC
Q 017539 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSG------VHMLLDSFEPIHGVLLCEGEDIDPSLYEAETS 85 (369)
Q Consensus 12 ~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~------~~~l~~~l~~~DGlll~GG~didp~~y~~~~~ 85 (369)
+|+|+..... +-+.-..+..++|+++|+.+.+|-.... .+... ...+|+|||+||..-.+..-+. +.
T Consensus 539 KVaILvadG~----fE~~El~~p~~aL~~aGa~V~vVsp~~g~GvD~t~~~~~--s~~fDAVvlPGG~~~~~~~~~~-~d 611 (688)
T 3ej6_A 539 RVGVLSTTKG----GSLDKAKALKEQLEKDGLKVTVIAEYLASGVDQTYSAAD--ATAFDAVVVAEGAERVFSGKGA-MS 611 (688)
T ss_dssp EEEEECCSSS----SHHHHHHHHHHHHHHTTCEEEEEESSCCTTCCEETTTCC--GGGCSEEEECTTCCTTTSTTTT-CC
T ss_pred EEEEEccCCC----ccHHHHHHHHHHHHHCCCEEEEEeCCCCCCcccCcccCC--hhcCcEEEECCCcccccccccc-hh
Confidence 6777754321 1112223456889999999998864321 11111 1259999999995211100000 00
Q ss_pred CCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHH
Q 017539 86 NLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (369)
Q Consensus 86 ~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a 140 (369)
. ...+.--+.+++.+.+.++||-.||-|-|+|..+
T Consensus 612 ~--------------------Lr~~~~a~~fV~e~~~hgKpIAAIchgp~lL~~A 646 (688)
T 3ej6_A 612 P--------------------LFPAGRPSQILTDGYRWGKPVAAVGSAKKALQSI 646 (688)
T ss_dssp T--------------------TSCTTHHHHHHHHHHHTTCCEEEEGGGHHHHHHT
T ss_pred h--------------------hccCHHHHHHHHHHHHcCCEEEEeCccHHHHHHc
Confidence 0 0011123578899999999999999999999875
No 54
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=95.74 E-value=0.023 Score=52.48 Aligned_cols=29 Identities=14% Similarity=0.124 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHcCCCEEEEeHHHHHHHHH
Q 017539 112 IELRLAKLCLERNIPYLGICRGSQVLNVA 140 (369)
Q Consensus 112 ~e~~li~~~~e~~iPiLGIClG~QlL~~a 140 (369)
....+++.+.++++||-+||-|-.+|+.+
T Consensus 119 ~l~~~l~~~~~~gk~iaaIC~G~~~La~a 147 (244)
T 3kkl_A 119 NLQDIASKIYANGGVIAAICHGPLLFDGL 147 (244)
T ss_dssp HHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred HHHHHHHHHHHcCCEEEEECHHHHHHHHh
Confidence 34678899999999999999999999765
No 55
>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}
Probab=95.62 E-value=0.04 Score=49.34 Aligned_cols=29 Identities=14% Similarity=0.014 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHcCCCEEEEeHHHHHHHHH
Q 017539 112 IELRLAKLCLERNIPYLGICRGSQVLNVA 140 (369)
Q Consensus 112 ~e~~li~~~~e~~iPiLGIClG~QlL~~a 140 (369)
..+.+++++.+++++|.+||-|-.+|+.+
T Consensus 96 ~l~~~l~~~~~~g~~iaaIC~G~~~La~a 124 (209)
T 3er6_A 96 ALFDWIRELHLKGSKIVAIDTGIFVVAKA 124 (209)
T ss_dssp HHHHHHHHHHHTTCEEEEETTHHHHHHHH
T ss_pred HHHHHHHHHHhcCCEEEEEcHHHHHHHHc
Confidence 34678888889999999999999999986
No 56
>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}
Probab=95.61 E-value=0.028 Score=50.02 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=24.0
Q ss_pred HHHHHHHHHcCCCEEEEeHHHHHHHHH
Q 017539 114 LRLAKLCLERNIPYLGICRGSQVLNVA 140 (369)
Q Consensus 114 ~~li~~~~e~~iPiLGIClG~QlL~~a 140 (369)
..+++++.+++++|.+||-|-.+|+.+
T Consensus 91 ~~~l~~~~~~g~~iaaIC~G~~~La~a 117 (202)
T 3gra_A 91 DRLLNDCAAHGMALGGLWNGAWFLGRA 117 (202)
T ss_dssp HHHHHHHHHHTCEEEEETTHHHHHHHH
T ss_pred HHHHHHHHhhCCEEEEECHHHHHHHHc
Confidence 467788888999999999999999986
No 57
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=95.58 E-value=0.038 Score=54.09 Aligned_cols=97 Identities=18% Similarity=0.238 Sum_probs=60.7
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCCh----------------------------hhhhhh-
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGV----------------------------HMLLDS- 60 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~----------------------------~~l~~~- 60 (369)
+++|+|+.-... ...--..-++.++++|+.+.++.....+ ..+.+.
T Consensus 12 ~~kv~ill~dg~-----e~~E~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~ 86 (396)
T 3uk7_A 12 SRTVLILCGDYM-----EDYEVMVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLNATFDEVD 86 (396)
T ss_dssp CCEEEEECCTTE-----EHHHHHHHHHHHHHTTCEEEEECTTCCTTCEECEEEEECSSSSSCEEEECCCEECCSCGGGCC
T ss_pred CCeEEEEeCCCc-----cHHHHHHHHHHHHHCCCEEEEEcCCCcCCCcccccccccccchhhhhccCceeeccCChhhcC
Confidence 467888764321 1111123467788999999888543211 011111
Q ss_pred cCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHH
Q 017539 61 FEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (369)
Q Consensus 61 l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a 140 (369)
.+.+|.|++|||.. +.. ...+.....+++.+.++++||.+||-|.++|+.+
T Consensus 87 ~~~~D~livpGG~~--~~~---------------------------~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~La~a 137 (396)
T 3uk7_A 87 LSKYDGLVIPGGRA--PEY---------------------------LALTASVVELVKEFSRSGKPIASICHGQLILAAA 137 (396)
T ss_dssp GGGCSEEEECCBSH--HHH---------------------------HTTCHHHHHHHHHHHHTTCCEEEETTTHHHHHHT
T ss_pred cccCCEEEECCCcc--hhh---------------------------cccCHHHHHHHHHHHHcCCEEEEECchHHHHHhc
Confidence 24689999999942 100 0011234578888899999999999999999986
No 58
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
Probab=95.52 E-value=0.022 Score=55.77 Aligned_cols=97 Identities=15% Similarity=0.189 Sum_probs=58.7
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCCh-------------hhhhhhc--CCCCEEEECCCCC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGV-------------HMLLDSF--EPIHGVLLCEGED 74 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~-------------~~l~~~l--~~~DGlll~GG~d 74 (369)
+.+|+|+.-.... ..++ ..-++.+..+|..+.++.....+ +...+.+ ..+|.||+|||.+
T Consensus 10 mkkV~ILl~dgf~---~~El--~~p~dvL~~Ag~~v~vvS~~~g~~V~ss~G~~~i~~d~~l~~v~~~~~DaLiVPGG~g 84 (365)
T 3fse_A 10 KKKVAILIEQAVE---DTEF--IIPCNGLKQAGFEVVVLGSRMNEKYKGKRGRLSTQADGTTTEAIASEFDAVVIPGGMA 84 (365)
T ss_dssp -CEEEEECCTTBC---HHHH--HHHHHHHHHTTCEEEEEESSSSCCEECTTSCCEECCSEETTTCCGGGCSEEEECCBTH
T ss_pred ceEEEEEECCCCc---HHHH--HHHHHHHHHCCCEEEEEECCCCceeecCCCceEEeCCCCHhhCCCcCCCEEEEECCcc
Confidence 4578887644211 1111 23456788899888777543221 0001111 2489999999952
Q ss_pred CCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHH
Q 017539 75 IDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (369)
Q Consensus 75 idp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a 140 (369)
+.. ...+.-...+++.+.++++||.+||-|-.+|+.+
T Consensus 85 --~~~---------------------------l~~~~~l~~~Lr~~~~~gk~IaAIC~G~~lLA~A 121 (365)
T 3fse_A 85 --PDK---------------------------MRRNPNTVRFVQEAMEQGKLVAAVCHGPQVLIEG 121 (365)
T ss_dssp --HHH---------------------------HTTCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred --hhh---------------------------ccCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHc
Confidence 100 0012234578888889999999999999999875
No 59
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...
Probab=95.49 E-value=0.021 Score=60.65 Aligned_cols=95 Identities=11% Similarity=-0.009 Sum_probs=60.1
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCC-----------hhh-hhhh-cCCCCEEEECCCCCCCC
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSG-----------VHM-LLDS-FEPIHGVLLCEGEDIDP 77 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~-----------~~~-l~~~-l~~~DGlll~GG~didp 77 (369)
.+|+|+.-.... ..-...-++.|+++|+.+.+|..... .+. +.+. ...+|+|||||| + +
T Consensus 601 rKVaILlaDGfE-----e~El~~pvdaLr~AG~~V~vVS~~~g~V~gs~G~~V~aD~t~~~v~s~~fDALVVPGG-g--~ 672 (753)
T 3ttv_A 601 RVVAILLNDEVR-----SADLLAILKALKAKGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSLTVDAVIVPCG-N--I 672 (753)
T ss_dssp CEEEEECCTTCC-----HHHHHHHHHHHHHHTCEEEEEESSSSEEECTTSCEEECCEETTTSCGGGCSEEEECCS-C--G
T ss_pred CEEEEEecCCCC-----HHHHHHHHHHHHHCCCEEEEEEcCCCeEEeCCCCEEecccchhhCCCcCCCEEEECCC-C--h
Confidence 467877544221 11123457789999999988854321 111 1111 124899999999 3 2
Q ss_pred CCccccCCCCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHH
Q 017539 78 SLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (369)
Q Consensus 78 ~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a 140 (369)
... ..+.-.+.+++.+.+.++||-+||-|-++|..+
T Consensus 673 ~~L---------------------------r~d~~vl~~Vre~~~~gKpIAAIC~Gp~lLa~A 708 (753)
T 3ttv_A 673 ADI---------------------------ADNGDANYYLMEAYKHLKPIALAGDARKFKATI 708 (753)
T ss_dssp GGT---------------------------TTCHHHHHHHHHHHHTTCCEEEEGGGGGGGGGG
T ss_pred HHh---------------------------hhCHHHHHHHHHHHhcCCeEEEECchHHHHHHc
Confidence 111 112234578899999999999999999999875
No 60
>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}
Probab=95.36 E-value=0.012 Score=50.87 Aligned_cols=29 Identities=17% Similarity=0.319 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHcCCCEEEEeHHHHHHHHH
Q 017539 112 IELRLAKLCLERNIPYLGICRGSQVLNVA 140 (369)
Q Consensus 112 ~e~~li~~~~e~~iPiLGIClG~QlL~~a 140 (369)
....+++++.++++||.+||-|.++|+.+
T Consensus 92 ~~~~~l~~~~~~gk~i~aiC~G~~~La~a 120 (175)
T 3cne_A 92 DLMEVIKTFGEKGKMMIGHCAGAMMFDFT 120 (175)
T ss_dssp HHHHHHHHHHHTTCEEEEETTHHHHHHHT
T ss_pred HHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence 34678888999999999999999999976
No 61
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=95.35 E-value=0.038 Score=54.12 Aligned_cols=98 Identities=17% Similarity=0.261 Sum_probs=60.6
Q ss_pred CCcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCCh----------------------------hhhhhh
Q 017539 9 ILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGV----------------------------HMLLDS 60 (369)
Q Consensus 9 ~~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~----------------------------~~l~~~ 60 (369)
.+++|+|+.-.... ..--..-++.++++|+.+.++...... ..+.+.
T Consensus 204 ~~~ki~ill~dg~~-----~~e~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~ 278 (396)
T 3uk7_A 204 ANKRILFLCGDYME-----DYEVKVPFQSLQALGCQVDAVCPEKKAGDRCPTAIHDFEGDQTYSEKPGHTFALTTNFDDL 278 (396)
T ss_dssp CCCEEEEECCTTEE-----HHHHHHHHHHHHHHTCEEEEECTTCCTTCEECEEEEECCSSSSCEEEECCCEECCSCGGGC
T ss_pred ccceEEEEecCCCc-----chhHHHHHHHHHHCCCEEEEECCCCCCCcccccccccccccchhhhcCCceeeccCCHHHC
Confidence 34678887553211 111123456788899999887543211 011111
Q ss_pred -cCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHH
Q 017539 61 -FEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNV 139 (369)
Q Consensus 61 -l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~ 139 (369)
.+.+|.|++|||.+ +.. + ..+.-...+++++.++++||.+||-|.++|+.
T Consensus 279 ~~~~~D~livpGg~~--~~~---------------~------------~~~~~~~~~l~~~~~~~~~i~aiC~g~~~La~ 329 (396)
T 3uk7_A 279 VSSSYDALVIPGGRA--PEY---------------L------------ALNEHVLNIVKEFMNSEKPVASICHGQQILAA 329 (396)
T ss_dssp CGGGCSEEEECCBSH--HHH---------------H------------TTCHHHHHHHHHHHHTTCCEEEEGGGHHHHHH
T ss_pred CcccCCEEEECCCcc--hhh---------------h------------ccCHHHHHHHHHHHHCCCEEEEEchHHHHHHH
Confidence 23699999999942 100 0 01122357888888999999999999999998
Q ss_pred H
Q 017539 140 A 140 (369)
Q Consensus 140 a 140 (369)
+
T Consensus 330 a 330 (396)
T 3uk7_A 330 A 330 (396)
T ss_dssp T
T ss_pred c
Confidence 6
No 62
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0
Probab=94.99 E-value=0.028 Score=50.16 Aligned_cols=98 Identities=14% Similarity=0.092 Sum_probs=58.6
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCC-Ch-----------h-hhhhh-cCCCCEEEECCCCCC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS-GV-----------H-MLLDS-FEPIHGVLLCEGEDI 75 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~-~~-----------~-~l~~~-l~~~DGlll~GG~di 75 (369)
+++|+|+.-.... ..++ ..-++.+..+|..+.++.... .+ + .+.+. .+.+|.||+|||..
T Consensus 9 ~~~v~ill~~g~~---~~e~--~~~~~~l~~ag~~v~~vs~~g~~~v~~~~G~~v~~d~~l~~~~~~~~D~livpGG~~- 82 (208)
T 3ot1_A 9 SKRILVPVAHGSE---EMET--VIIVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSAEAFDALALPGGVG- 82 (208)
T ss_dssp CCEEEEEECTTCC---HHHH--HHHHHHHHHTTCEEEEEESSSCSEEECTTSCEEECSEEGGGCCGGGCSEEEECCCHH-
T ss_pred CCeEEEEECCCCc---HHHH--HHHHHHHHHCCCEEEEEEcCCCcceecCCCcEEeCCCCHHHCCCcCCCEEEECCCch-
Confidence 3578887544211 1111 124567888898887776532 10 1 12221 13689999999931
Q ss_pred CCCCccccCCCCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHH-HHHHHH
Q 017539 76 DPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGS-QVLNVA 140 (369)
Q Consensus 76 dp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~-QlL~~a 140 (369)
.+. +...+.-...+++.+.++++||.+||-|- .+|+.+
T Consensus 83 ~~~---------------------------~l~~~~~l~~~l~~~~~~gk~i~aiC~G~a~~La~a 121 (208)
T 3ot1_A 83 GAQ---------------------------AFADSTALLALIDAFSQQGKLVAAICATPALVFAKQ 121 (208)
T ss_dssp HHH---------------------------HHHTCHHHHHHHHHHHHTTCEEEEETTHHHHTTTTT
T ss_pred HHH---------------------------HHhhCHHHHHHHHHHHHcCCEEEEEChhHHHHHHHC
Confidence 000 00112234578888999999999999998 788763
No 63
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=94.78 E-value=0.021 Score=52.37 Aligned_cols=29 Identities=10% Similarity=0.121 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHcCCCEEEEeHHHHHHHHH
Q 017539 112 IELRLAKLCLERNIPYLGICRGSQVLNVA 140 (369)
Q Consensus 112 ~e~~li~~~~e~~iPiLGIClG~QlL~~a 140 (369)
...++++.+.++++||.+||-|-.+|+.+
T Consensus 119 ~l~~~l~~~~~~gk~vaaIC~G~~~La~a 147 (243)
T 1rw7_A 119 DLQDIASEIYANGGVVAAVCHGPAIFDGL 147 (243)
T ss_dssp HHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred HHHHHHHHHHHcCCEEEEECCCHHHHHhc
Confidence 34678899999999999999999988865
No 64
>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}
Probab=94.67 E-value=0.072 Score=49.36 Aligned_cols=28 Identities=25% Similarity=0.273 Sum_probs=24.6
Q ss_pred HHHHHHHHHHcCCCEEEEeHHHHHHHHH
Q 017539 113 ELRLAKLCLERNIPYLGICRGSQVLNVA 140 (369)
Q Consensus 113 e~~li~~~~e~~iPiLGIClG~QlL~~a 140 (369)
.+.+++.+.+++++|.+||-|..+|+.+
T Consensus 106 l~~~Lr~~~~~gk~IaaICtG~~lLa~A 133 (253)
T 3ewn_A 106 TLAFMADRGARAKYITSVCSGSLILGAA 133 (253)
T ss_dssp HHHHHHHHHTTCSEEEEETTHHHHHHHT
T ss_pred HHHHHHHHHHcCCEEEEEChHHHHHHHc
Confidence 4578888888999999999999999875
No 65
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=94.02 E-value=0.019 Score=51.57 Aligned_cols=28 Identities=18% Similarity=0.129 Sum_probs=24.6
Q ss_pred HHHHHHHHHHcCCCEEEEeHHHHHHHHH
Q 017539 113 ELRLAKLCLERNIPYLGICRGSQVLNVA 140 (369)
Q Consensus 113 e~~li~~~~e~~iPiLGIClG~QlL~~a 140 (369)
...+++++.++++||.+||-|-++|+.+
T Consensus 111 l~~~l~~~~~~~k~iaaiC~G~~~La~a 138 (224)
T 1u9c_A 111 LQYVLQQFAEDGRIIAAVCHGPSGLVNA 138 (224)
T ss_dssp HHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred HHHHHHHHHHCCCEEEEEChHHHHHHHc
Confidence 4578888999999999999999998865
No 66
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=93.68 E-value=0.12 Score=54.57 Aligned_cols=113 Identities=13% Similarity=0.106 Sum_probs=62.5
Q ss_pred cEEEEecC--cccCcCcccccchhHHHHHHHHCCCEEEEEcCCCC--hhh-hhh-hcCCCCEEEECCCCCCCCCCccccC
Q 017539 11 PRVLIVSR--RSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSG--VHM-LLD-SFEPIHGVLLCEGEDIDPSLYEAET 84 (369)
Q Consensus 11 P~IgIv~~--~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~--~~~-l~~-~l~~~DGlll~GG~didp~~y~~~~ 84 (369)
.+|+|+.. ... -..-....++.|+++|+.+++|-.... .+. +.+ ....+|+|||+||. +.+++...
T Consensus 530 ~kVaIL~a~~dGf-----e~~E~~~~~~~L~~aG~~V~vVs~~~g~~vD~t~~~~~s~~fDAVvlPGG~---~g~~~~~~ 601 (688)
T 2iuf_A 530 LKVGLLASVNKPA-----SIAQGAKLQVALSSVGVDVVVVAERXANNVDETYSASDAVQFDAVVVADGA---EGLFGADS 601 (688)
T ss_dssp CEEEEECCTTCHH-----HHHHHHHHHHHHGGGTCEEEEEESSCCTTCCEESTTCCGGGCSEEEECTTC---GGGCCTTT
T ss_pred CEEEEEecCCCCC-----cHHHHHHHHHHHHHCCCEEEEEeccCCcccccchhcCCccccCeEEecCCC---cccccccc
Confidence 46888755 211 112223467789999999998865321 111 111 12369999999994 12111000
Q ss_pred CCCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHH
Q 017539 85 SNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (369)
Q Consensus 85 ~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a 140 (369)
. .... ...+..-....+.-.+.+++.+.+.++||-.||-|-++|..+
T Consensus 602 ~--~~~~-------~~~~~~~~L~~~~~~~~~v~~~~~~gKpIaAIc~ap~vL~~a 648 (688)
T 2iuf_A 602 F--TVEP-------SAGSGASTLYPAGRPLNILLDAFRFGKTVGALGSGSDALESG 648 (688)
T ss_dssp T--TCCC-------CTTSCCCSSSCTTHHHHHHHHHHHHTCEEEEEGGGHHHHHHT
T ss_pred c--cccc-------ccccchhhcccChHHHHHHHHHHHcCCEEEEECchHHHHHHc
Confidence 0 0000 000000011122234578899999999999999999988864
No 67
>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3
Probab=93.55 E-value=0.18 Score=53.50 Aligned_cols=99 Identities=12% Similarity=0.087 Sum_probs=61.0
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCC-----------hh-hhhhh-cCCCCEEEECCCC-CCC
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSG-----------VH-MLLDS-FEPIHGVLLCEGE-DID 76 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~-----------~~-~l~~~-l~~~DGlll~GG~-did 76 (369)
.+|+|+..... ...--..-++.+..+|+.+.++..... .+ .+.+. ...+|+|||+||. ...
T Consensus 535 rkVaILl~dGf-----e~~El~~p~dvL~~AG~~V~ivS~~gg~V~ss~G~~v~~d~~l~~v~~~~yDaViVPGG~~~~~ 609 (715)
T 1sy7_A 535 RRVAIIIADGY-----DNVAYDAAYAAISANQAIPLVIGPRRSKVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKAAE 609 (715)
T ss_dssp CEEEEECCTTB-----CHHHHHHHHHHHHHTTCEEEEEESCSSCEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHHHH
T ss_pred CEEEEEEcCCC-----CHHHHHHHHHHHHhcCCEEEEEECCCCceecCCCceEecccccccCCcccCCEEEEcCCcccHh
Confidence 46888765321 111112355678889999988754321 11 11111 1358999999993 110
Q ss_pred CCCccccCCCCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHHHHHHhCC
Q 017539 77 PSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGSQVLNVACGG 143 (369)
Q Consensus 77 p~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~QlL~~a~GG 143 (369)
+...+.-...+++.+.+.++||.+||-|-.+|+.++|-
T Consensus 610 -----------------------------~l~~~~~l~~~Lr~~~~~gK~IaAIC~G~~lLA~AlGL 647 (715)
T 1sy7_A 610 -----------------------------TLSKNGRALHWIREAFGHLKAIGATGEAVDLVAKAIAL 647 (715)
T ss_dssp -----------------------------HHHTCHHHHHHHHHHHHTTCEEEEETTHHHHHHHHHCC
T ss_pred -----------------------------hhccCHHHHHHHHHHHhCCCEEEEECHHHHHHHHccCc
Confidence 00112234578889999999999999999999988543
No 68
>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A
Probab=92.94 E-value=0.073 Score=48.45 Aligned_cols=28 Identities=25% Similarity=0.234 Sum_probs=24.4
Q ss_pred HHHHHHHHHHcCCCEEEEeHHHHHHHHH
Q 017539 113 ELRLAKLCLERNIPYLGICRGSQVLNVA 140 (369)
Q Consensus 113 e~~li~~~~e~~iPiLGIClG~QlL~~a 140 (369)
.+.+++.+.+++++|.+||-|-.+|+.+
T Consensus 86 l~~~lr~~~~~g~~v~aiC~G~~~La~a 113 (231)
T 3noq_A 86 ALAFIRQQAARARYVTSVSTGSLVLGAA 113 (231)
T ss_dssp HHHHHHHHHTTCSEEEEETTHHHHHHHT
T ss_pred HHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence 4577888888999999999999999875
No 69
>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A
Probab=92.33 E-value=0.068 Score=50.48 Aligned_cols=28 Identities=7% Similarity=0.208 Sum_probs=24.4
Q ss_pred HHHHHHHHHHcCCCEEEEeHHHHHHHHH
Q 017539 113 ELRLAKLCLERNIPYLGICRGSQVLNVA 140 (369)
Q Consensus 113 e~~li~~~~e~~iPiLGIClG~QlL~~a 140 (369)
...+++++.+++++|.+||-|-.+|..+
T Consensus 167 l~~~l~~~~~~gk~VaaIC~Gp~~La~a 194 (291)
T 1n57_A 167 VAAALQWAIKNDRFVISLCHGPAAFLAL 194 (291)
T ss_dssp HHHHHHHHHHTTCEEEEETTGGGGGGGG
T ss_pred HHHHHHHHHHcCCEEEEECccHHHHHhh
Confidence 4678899999999999999999987765
No 70
>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum}
Probab=91.47 E-value=0.11 Score=46.63 Aligned_cols=28 Identities=18% Similarity=0.327 Sum_probs=24.6
Q ss_pred HHHHHHHHHHcCCCEEEEeHHHHHHHHH
Q 017539 113 ELRLAKLCLERNIPYLGICRGSQVLNVA 140 (369)
Q Consensus 113 e~~li~~~~e~~iPiLGIClG~QlL~~a 140 (369)
.+.+++.+.+++++|.+||-|-.+|+.+
T Consensus 86 ~~~~l~~~~~~~k~iaaiC~G~~~La~a 113 (211)
T 3mgk_A 86 FINFIGNMVKESKYIISVCTGSALLSKA 113 (211)
T ss_dssp HHHHHHHHHHHCSEEEECTTHHHHHHHT
T ss_pred HHHHHHHHHHcCCEEEEEchHHHHHHhc
Confidence 4578888888999999999999999875
No 71
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=91.46 E-value=0.42 Score=42.21 Aligned_cols=68 Identities=19% Similarity=0.221 Sum_probs=44.2
Q ss_pred CCcEEEEecCcc-cCcCcccccchhHHHHHHHHCCCEEEEEcCC-CChhhh----hhhc-CCCCEEEECCCCCCCC
Q 017539 9 ILPRVLIVSRRS-VRKNKFVDFVGEYHLDLIVGYGAVPAIVPRV-SGVHML----LDSF-EPIHGVLLCEGEDIDP 77 (369)
Q Consensus 9 ~~P~IgIv~~~~-~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~-~~~~~l----~~~l-~~~DGlll~GG~didp 77 (369)
.+|+|+|++--+ ...++ .|.-......++++.|+.++..... ++.+.+ .+.+ +.+|-||.+||.++.+
T Consensus 29 ~~~rvaIistGdEl~~G~-~Dsn~~~L~~~L~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~DlVIttGGts~g~ 103 (185)
T 3rfq_A 29 VVGRALVVVVDDRTAHGD-EDHSGPLVTELLTEAGFVVDGVVAVEADEVDIRNALNTAVIGGVDLVVSVGGTGVTP 103 (185)
T ss_dssp CCEEEEEEEECHHHHTTC-CCSHHHHHHHHHHHTTEEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESCCSSST
T ss_pred CCCEEEEEEECcccCCCC-cCcHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCC
Confidence 479999997543 33455 6665566677889999988743322 233333 3333 5799999999975543
No 72
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=90.98 E-value=0.49 Score=41.36 Aligned_cols=69 Identities=14% Similarity=0.166 Sum_probs=43.5
Q ss_pred CCcEEEEecCccc-C----c-CcccccchhHHHHHHHHCCCEEEEEcCC-CChhhh----hhhcCC--CCEEEECCCCCC
Q 017539 9 ILPRVLIVSRRSV-R----K-NKFVDFVGEYHLDLIVGYGAVPAIVPRV-SGVHML----LDSFEP--IHGVLLCEGEDI 75 (369)
Q Consensus 9 ~~P~IgIv~~~~~-~----~-~~~~~~v~~~~l~~l~~~Ga~~vivp~~-~~~~~l----~~~l~~--~DGlll~GG~di 75 (369)
.+|+|+|++--+. . . +...|.-......++.+.|+.++..... ++.+.+ .+.++. +|-||.+||.++
T Consensus 14 ~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVittGG~s~ 93 (178)
T 2pjk_A 14 KSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGTGY 93 (178)
T ss_dssp CCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCCSS
T ss_pred CCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCCCC
Confidence 4789999975432 1 2 4555555555667888999988743322 234433 344455 899999999754
Q ss_pred CC
Q 017539 76 DP 77 (369)
Q Consensus 76 dp 77 (369)
.+
T Consensus 94 g~ 95 (178)
T 2pjk_A 94 SP 95 (178)
T ss_dssp ST
T ss_pred CC
Confidence 43
No 73
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=90.55 E-value=0.63 Score=40.31 Aligned_cols=75 Identities=17% Similarity=0.146 Sum_probs=44.4
Q ss_pred CCCCCCCCCCcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCC-CChhhh----hhhcC--CCCEEEECCCC
Q 017539 1 MAAHDLSVILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRV-SGVHML----LDSFE--PIHGVLLCEGE 73 (369)
Q Consensus 1 ~~~~~~~~~~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~-~~~~~l----~~~l~--~~DGlll~GG~ 73 (369)
|+.++-.-.+|+|+|++--+. .+...|.-......++.+.|+.++..... ++.+.+ .+.++ .+|-||.+||.
T Consensus 1 ~~~~~~~~~~~~v~Ii~tGdE-~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVittGG~ 79 (172)
T 1mkz_A 1 MSQVSTEFIPTRIAILTVSNR-RGEEDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGT 79 (172)
T ss_dssp --CCCSSCCCCEEEEEEECSS-CCGGGCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEESCC
T ss_pred CCCCCCCCCCCEEEEEEEeCC-CCcccCccHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeCCCC
Confidence 444443445789999975443 34445554455667888999987643322 233333 33344 39999999996
Q ss_pred CCC
Q 017539 74 DID 76 (369)
Q Consensus 74 did 76 (369)
++.
T Consensus 80 g~~ 82 (172)
T 1mkz_A 80 GLT 82 (172)
T ss_dssp SSS
T ss_pred CCC
Confidence 543
No 74
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=87.43 E-value=0.51 Score=44.03 Aligned_cols=86 Identities=15% Similarity=0.099 Sum_probs=49.5
Q ss_pred CCCcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCCh--------hhhhhhcCCCCEEEECCCCCCCCCC
Q 017539 8 VILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGV--------HMLLDSFEPIHGVLLCEGEDIDPSL 79 (369)
Q Consensus 8 ~~~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~--------~~l~~~l~~~DGlll~GG~didp~~ 79 (369)
..+.+|+|+.++.. .. .........+++.+.|..+++.+..... ......-+.+|.||..||-
T Consensus 3 ~~mkki~ii~np~~--~~-~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~GGD------ 73 (292)
T 2an1_A 3 NHFKCIGIVGHPRH--PT-ALTTHEMLYRWLCDQGYEVIVEQQIAHELQLKNVPTGTLAEIGQQADLAVVVGGD------ 73 (292)
T ss_dssp -CCCEEEEECC----------CHHHHHHHHHHHTTCEEEEEHHHHHHTTCSSCCEECHHHHHHHCSEEEECSCH------
T ss_pred CcCcEEEEEEcCCC--HH-HHHHHHHHHHHHHHCCCEEEEecchhhhcccccccccchhhcccCCCEEEEEcCc------
Confidence 33568999988753 11 1233455678899999988776421000 0001112358999999992
Q ss_pred ccccCCCCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHH
Q 017539 80 YEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRG 133 (369)
Q Consensus 80 y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG 133 (369)
.-.+..++.+.+.++|++||=.|
T Consensus 74 -------------------------------GT~l~a~~~~~~~~~P~lGI~~G 96 (292)
T 2an1_A 74 -------------------------------GNMLGAARTLARYDINVIGINRG 96 (292)
T ss_dssp -------------------------------HHHHHHHHHHTTSSCEEEEBCSS
T ss_pred -------------------------------HHHHHHHHHhhcCCCCEEEEECC
Confidence 11245566666668999999655
No 75
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=87.24 E-value=0.45 Score=41.06 Aligned_cols=66 Identities=14% Similarity=0.246 Sum_probs=39.9
Q ss_pred CCCcEEEEecCcc-cCcCcccccchhHHHHHHHHCCCEEE---EEcCCCChhhh----hhhcC-CCCEEEECCCCCCC
Q 017539 8 VILPRVLIVSRRS-VRKNKFVDFVGEYHLDLIVGYGAVPA---IVPRVSGVHML----LDSFE-PIHGVLLCEGEDID 76 (369)
Q Consensus 8 ~~~P~IgIv~~~~-~~~~~~~~~v~~~~l~~l~~~Ga~~v---ivp~~~~~~~l----~~~l~-~~DGlll~GG~did 76 (369)
..+|+|+|++--+ ...+...|.-......++++.|+.++ ++|- + +.+ .+.++ .+|-||.+||.++.
T Consensus 5 ~~~~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~D--d-~~i~~al~~a~~~~~DlVittGG~s~g 79 (164)
T 3pzy_A 5 MTTRSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVAD--G-SPVGEALRKAIDDDVDVILTSGGTGIA 79 (164)
T ss_dssp --CCEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEECS--S-HHHHHHHHHHHHTTCSEEEEESCCSSS
T ss_pred CCCCEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeCC--H-HHHHHHHHHHHhCCCCEEEECCCCCCC
Confidence 4578999997543 33345555555556678889999886 4553 2 333 33343 79999999997543
No 76
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=86.74 E-value=1.1 Score=38.58 Aligned_cols=67 Identities=21% Similarity=0.196 Sum_probs=41.7
Q ss_pred CCcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCC-CChh----hhhhhcC--CCCEEEECCCCCCC
Q 017539 9 ILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRV-SGVH----MLLDSFE--PIHGVLLCEGEDID 76 (369)
Q Consensus 9 ~~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~-~~~~----~l~~~l~--~~DGlll~GG~did 76 (369)
.+|+|+|++--+.. +...|.-......++.+.|+.++..... ++.+ .+.+.++ .+|-||.+||.++.
T Consensus 12 ~~~rv~Ii~tGdEl-g~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~g 85 (169)
T 1y5e_A 12 KEVRCKIVTISDTR-TEETDKSGQLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNGGTGIT 85 (169)
T ss_dssp CCCEEEEEEECSSC-CTTTCHHHHHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEECCCSSS
T ss_pred cCCEEEEEEEcCcc-CeeccChHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEcCCCCCC
Confidence 36899999754333 4444544445566788899987643322 2333 3444555 79999999996543
No 77
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=86.21 E-value=0.67 Score=40.47 Aligned_cols=67 Identities=10% Similarity=-0.002 Sum_probs=42.1
Q ss_pred CCcEEEEecCcc-cCcCcccccchhHHHHHHHHCCCEEEEEcCC-CChhhh----hhhcCCCCEEEECCCCCC
Q 017539 9 ILPRVLIVSRRS-VRKNKFVDFVGEYHLDLIVGYGAVPAIVPRV-SGVHML----LDSFEPIHGVLLCEGEDI 75 (369)
Q Consensus 9 ~~P~IgIv~~~~-~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~-~~~~~l----~~~l~~~DGlll~GG~di 75 (369)
+.|+++|++--+ ...+...|.-.....+++.+.|+.+..+... .+.+.+ .+.++.+|-||.+||-+.
T Consensus 2 ~~~~v~IistGdEll~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~DlVittGG~g~ 74 (172)
T 3kbq_A 2 NAKNASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVALEVSDLVVSSGGLGP 74 (172)
T ss_dssp --CEEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHHCSEEEEESCCSS
T ss_pred CCCEEEEEEEcccccCCcEEeHHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEEcCCCcC
Confidence 458888886443 3335555655556677889999988744322 233333 334456999999999643
No 78
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=85.77 E-value=0.64 Score=40.51 Aligned_cols=70 Identities=13% Similarity=0.071 Sum_probs=38.6
Q ss_pred CCCCCcEEEEecCcc-cCcCcccccchhHHHHHHH---HCCCEEEEEcCC-CChh----hhhhhcC--CCCEEEECCCCC
Q 017539 6 LSVILPRVLIVSRRS-VRKNKFVDFVGEYHLDLIV---GYGAVPAIVPRV-SGVH----MLLDSFE--PIHGVLLCEGED 74 (369)
Q Consensus 6 ~~~~~P~IgIv~~~~-~~~~~~~~~v~~~~l~~l~---~~Ga~~vivp~~-~~~~----~l~~~l~--~~DGlll~GG~d 74 (369)
|++.+|+|+|++--+ ...+...|.-......+++ +.|+.+. .... ++.+ .+.+.++ .+|-||.+||-+
T Consensus 1 ~~~~~~rv~IistGdE~~~G~i~Dsn~~~l~~~l~~l~~~G~~v~-~~iv~Dd~~~I~~~l~~~~~~~~~DlVittGG~g 79 (178)
T 2pbq_A 1 MSEKKAVIGVVTISDRASKGIYEDISGKAIIDYLKDVIITPFEVE-YRVIPDERDLIEKTLIELADEKGCSLILTTGGTG 79 (178)
T ss_dssp ----CCEEEEEEECHHHHHTSSCCHHHHHHHHHHHHHBCSCCEEE-EEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCS
T ss_pred CCCCCCEEEEEEeCCcCCCCCeecchHHHHHHHHHHHHhCCCEEE-EEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 566789999997543 2334444443334445555 6898773 2222 3333 3334444 699999999965
Q ss_pred CC
Q 017539 75 ID 76 (369)
Q Consensus 75 id 76 (369)
+.
T Consensus 80 ~g 81 (178)
T 2pbq_A 80 PA 81 (178)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 79
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=85.25 E-value=3.8 Score=36.75 Aligned_cols=65 Identities=8% Similarity=0.006 Sum_probs=41.6
Q ss_pred CCCCCcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhc-----CCCCEEEECCC
Q 017539 6 LSVILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSF-----EPIHGVLLCEG 72 (369)
Q Consensus 6 ~~~~~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l-----~~~DGlll~GG 72 (369)
|+....+||++.... .+.+..-+.....+.+.+.|..+++.....+.+...+.+ ..+||||+.+.
T Consensus 1 ~s~~~~~Ig~i~~~~--~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 70 (291)
T 3l49_A 1 MSLEGKTIGITAIGT--DHDWDLKAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLG 70 (291)
T ss_dssp -CCTTCEEEEEESCC--SSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESS
T ss_pred CCCCCcEEEEEeCCC--CChHHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 455556899986532 244555555666778888999999887655432211111 37999999865
No 80
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=84.76 E-value=0.95 Score=39.93 Aligned_cols=76 Identities=20% Similarity=0.208 Sum_probs=38.7
Q ss_pred CCCCCCCCC----CcEEEEecCcc-cCcCcccccchhHHHHHHHH---CCCEEEEEcCC-CChhh----hhhhcC--CCC
Q 017539 1 MAAHDLSVI----LPRVLIVSRRS-VRKNKFVDFVGEYHLDLIVG---YGAVPAIVPRV-SGVHM----LLDSFE--PIH 65 (369)
Q Consensus 1 ~~~~~~~~~----~P~IgIv~~~~-~~~~~~~~~v~~~~l~~l~~---~Ga~~vivp~~-~~~~~----l~~~l~--~~D 65 (369)
|+..++++. +|+|+|++--+ ...+...|.-......++.+ .|+.++..... ++.+. +.+.++ .+|
T Consensus 1 ~a~~g~~~v~v~~~~rv~IistGdEl~~g~~~D~n~~~L~~~L~~~~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~D 80 (189)
T 1jlj_A 1 MATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDEIEEIKETLIDWCDEKELN 80 (189)
T ss_dssp ------------CCCEEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTTTCCEEEEEEEECSCHHHHHHHHHHHHHTSCCS
T ss_pred CCcCCcccccccCCCEEEEEEECCccCCCcccchHHHHHHHHHhchhcCCcEEEEEEEeCCCHHHHHHHHHHHhhcCCCC
Confidence 444444443 68999997543 22233344433344455666 79888643322 23333 333444 689
Q ss_pred EEEECCCCCCC
Q 017539 66 GVLLCEGEDID 76 (369)
Q Consensus 66 Glll~GG~did 76 (369)
-||.+||.+++
T Consensus 81 lVIttGGtg~g 91 (189)
T 1jlj_A 81 LILTTGGTGFA 91 (189)
T ss_dssp EEEEESCCSSS
T ss_pred EEEEcCCCCCC
Confidence 99999997543
No 81
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=82.50 E-value=0.91 Score=38.92 Aligned_cols=67 Identities=15% Similarity=0.000 Sum_probs=40.6
Q ss_pred CcEEEEecCcc-cCcCcccccchhHHHHHHHHCCCEEEEEcCC-CChh----hhhhhcC--CCCEEEECCCCCCC
Q 017539 10 LPRVLIVSRRS-VRKNKFVDFVGEYHLDLIVGYGAVPAIVPRV-SGVH----MLLDSFE--PIHGVLLCEGEDID 76 (369)
Q Consensus 10 ~P~IgIv~~~~-~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~-~~~~----~l~~~l~--~~DGlll~GG~did 76 (369)
+|+|+|++--+ ...+...|.-......++.++|+.++..... ++.+ .+.+.++ .+|-||.+||.++.
T Consensus 1 ~~~v~Ii~tGdEl~~G~i~D~n~~~l~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~g 75 (164)
T 2is8_A 1 MFRVGILTVSDKGFRGERQDTTHLAIREVLAGGPFEVAAYELVPDEPPMIKKVLRLWADREGLDLILTNGGTGLA 75 (164)
T ss_dssp CEEEEEEEECHHHHHTSSCCCHHHHHHHHHTTSSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSS
T ss_pred CcEEEEEEEcCcccCCCcccchHHHHHHHHHHCCCeEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEcCCCCCC
Confidence 47888886433 3334445554455566788899887633222 2333 3334444 69999999996543
No 82
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=82.48 E-value=7.4 Score=34.78 Aligned_cols=62 Identities=5% Similarity=-0.040 Sum_probs=40.7
Q ss_pred CCcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhc-----CCCCEEEECCC
Q 017539 9 ILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSF-----EPIHGVLLCEG 72 (369)
Q Consensus 9 ~~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l-----~~~DGlll~GG 72 (369)
...+||++.... .+.+...+-...-+.+.+.|..+++.....+.+...+.+ ..+||||+.+.
T Consensus 14 ~~~~Igvi~~~~--~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 80 (298)
T 3tb6_A 14 SNKTIGVLTTYI--SDYIFPSIIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPT 80 (298)
T ss_dssp -CCEEEEEESCS--SSTTHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCS
T ss_pred cCceEEEEeCCC--CchHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEecc
Confidence 346899886542 345555566666778889999999887654433211111 37999999875
No 83
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=82.20 E-value=3 Score=39.28 Aligned_cols=83 Identities=18% Similarity=0.168 Sum_probs=48.1
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCCh------------------hhh--h-hhcCCCCEEEE
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGV------------------HML--L-DSFEPIHGVLL 69 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~------------------~~l--~-~~l~~~DGlll 69 (369)
.+|+|+.++... .. .-......+++.+.|..+++....... ... . ...+.+|-||.
T Consensus 5 ~ki~iI~n~~~~--~~-~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~ 81 (307)
T 1u0t_A 5 RSVLLVVHTGRD--EA-TETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCELVLV 81 (307)
T ss_dssp CEEEEEESSSGG--GG-SHHHHHHHHHHHTTTCEEEEEC-----------------------------------CCCEEE
T ss_pred CEEEEEEeCCCH--HH-HHHHHHHHHHHHHCCCEEEEecchhhhhhcccccccccccccccccccccccccccCCCEEEE
Confidence 579999887542 21 223456788899999988766532211 000 0 12335788888
Q ss_pred CCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHH
Q 017539 70 CEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRG 133 (369)
Q Consensus 70 ~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG 133 (369)
-||- .-.+..++.+...++|++||=.|
T Consensus 82 ~GGD-------------------------------------GT~l~a~~~~~~~~~pvlgi~~G 108 (307)
T 1u0t_A 82 LGGD-------------------------------------GTFLRAAELARNASIPVLGVNLG 108 (307)
T ss_dssp EECH-------------------------------------HHHHHHHHHHHHHTCCEEEEECS
T ss_pred EeCC-------------------------------------HHHHHHHHHhccCCCCEEEEeCC
Confidence 8881 22345666666678999999766
No 84
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=77.86 E-value=2.9 Score=39.18 Aligned_cols=47 Identities=11% Similarity=0.079 Sum_probs=33.6
Q ss_pred EEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCC
Q 017539 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEG 72 (369)
Q Consensus 12 ~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG 72 (369)
+|+|+.+.... .+...+++++.|..+.+..... + .++.+|.||.-||
T Consensus 31 ki~iv~~~~~~--------~~~l~~~L~~~g~~v~~~~~~~--~----~~~~~DlvIvlGG 77 (278)
T 1z0s_A 31 RAAVVYKTDGH--------VKRIEEALKRLEVEVELFNQPS--E----ELENFDFIVSVGG 77 (278)
T ss_dssp EEEEEESSSTT--------HHHHHHHHHHTTCEEEEESSCC--G----GGGGSSEEEEEEC
T ss_pred EEEEEeCCcHH--------HHHHHHHHHHCCCEEEEccccc--c----ccCCCCEEEEECC
Confidence 58898876432 4567888999999887765321 1 2346999999999
No 85
>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4}
Probab=77.12 E-value=0.6 Score=42.61 Aligned_cols=19 Identities=32% Similarity=0.350 Sum_probs=16.0
Q ss_pred HcCC-CEEEEeHHHHHHHHH
Q 017539 122 ERNI-PYLGICRGSQVLNVA 140 (369)
Q Consensus 122 e~~i-PiLGIClG~QlL~~a 140 (369)
+++. +|.+||-|-.+|+.+
T Consensus 109 ~~~~~~IaaIC~G~~lLa~A 128 (236)
T 3bhn_A 109 DPSRQLIGSICAGSFVLHEL 128 (236)
T ss_dssp CTTTCEEEEETTHHHHHHHT
T ss_pred CCCCCEEEEEcHHHHHHHHc
Confidence 4455 999999999999975
No 86
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=77.03 E-value=1.9 Score=38.17 Aligned_cols=66 Identities=15% Similarity=0.103 Sum_probs=38.0
Q ss_pred CcEEEEecCcc-cCcCcccccchhHHHHHHHHCCCE--EE---EEcCCCChhh----hhhhcC--CCCEEEECCCCCCCC
Q 017539 10 LPRVLIVSRRS-VRKNKFVDFVGEYHLDLIVGYGAV--PA---IVPRVSGVHM----LLDSFE--PIHGVLLCEGEDIDP 77 (369)
Q Consensus 10 ~P~IgIv~~~~-~~~~~~~~~v~~~~l~~l~~~Ga~--~v---ivp~~~~~~~----l~~~l~--~~DGlll~GG~didp 77 (369)
+|+|+|++--+ ...+...|.-.....+++.++|+. ++ ++| ++.+. +.+.++ .+|-||.+||.++.+
T Consensus 3 ~~rv~IIttGdEl~~G~i~D~n~~~L~~~L~~~G~~~~v~~~~iV~--Dd~~~I~~al~~a~~~~~~DlVitTGGtg~g~ 80 (195)
T 1di6_A 3 TLRIGLVSISDRASSGVYQDKGIPALEEWLTSALTTPFELETRLIP--DEQAIIEQTLCELVDEMSCHLVLTTGGTGPAR 80 (195)
T ss_dssp CEEEEEEEEECC-------CCHHHHHHHHHHHHBCSCEEEEEEEEE--SCHHHHHHHHHHHHHTSCCSEEEEESCCSSST
T ss_pred CCEEEEEEECCCCCCCeEEchHHHHHHHHHHHcCCCCceEEEEEeC--CCHHHHHHHHHHHHhcCCCCEEEECCCCCCCC
Confidence 68999986433 344555665555666788888876 33 444 23333 333444 589999999975443
No 87
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=76.95 E-value=13 Score=33.18 Aligned_cols=61 Identities=5% Similarity=-0.091 Sum_probs=40.2
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhc-----CCCCEEEECCC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSF-----EPIHGVLLCEG 72 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l-----~~~DGlll~GG 72 (369)
..+||++.... .+.+...+.....+.+.+.|..+++.....+.+...+.+ ..+||||+.+.
T Consensus 8 ~~~Ig~i~~~~--~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 73 (293)
T 3l6u_A 8 RNIVGFTIVND--KHEFAQRLINAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTL 73 (293)
T ss_dssp -CEEEEEESCS--CSHHHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred CcEEEEEEecC--CcHHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 46888886542 345555666667778889999999887665543221111 37999999865
No 88
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=76.61 E-value=8.3 Score=34.64 Aligned_cols=63 Identities=8% Similarity=0.010 Sum_probs=39.2
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChh---hhhhhc--CCCCEEEECCC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVH---MLLDSF--EPIHGVLLCEG 72 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~---~l~~~l--~~~DGlll~GG 72 (369)
..+|||+.......+.+...+-...-+.+.+.|..+++.....+.+ .+.+.+ ..+||||+.+.
T Consensus 8 s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 75 (288)
T 3gv0_A 8 TNVIALVLSVDEELMGFTSQMVFGITEVLSTTQYHLVVTPHIHAKDSMVPIRYILETGSADGVIISKI 75 (288)
T ss_dssp CCEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEESC
T ss_pred CCEEEEEecCCccccHHHHHHHHHHHHHHHHcCCEEEEecCCcchhHHHHHHHHHHcCCccEEEEecC
Confidence 4678888654322235555555566677788999988876543322 222222 47999999864
No 89
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=75.81 E-value=3.2 Score=38.74 Aligned_cols=61 Identities=11% Similarity=0.096 Sum_probs=41.1
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChh----hhhhhcC---CCCEEEECC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVH----MLLDSFE---PIHGVLLCE 71 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~----~l~~~l~---~~DGlll~G 71 (369)
+++||++.... ..+.+...+....-+.+.+.|..+++.....+.+ .+...+. .+||||+.+
T Consensus 3 ~~~Ig~i~p~~-~~~~f~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~ 70 (350)
T 3h75_A 3 LTSVVFLNPGN-STETFWVSYSQFMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVN 70 (350)
T ss_dssp CCEEEEEECSC-TTCHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEEC
T ss_pred CCEEEEECCCC-CCChHHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence 46888886542 2235666666667778888999998887655433 2333443 899999985
No 90
>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A
Probab=74.86 E-value=1.5 Score=38.39 Aligned_cols=24 Identities=21% Similarity=0.141 Sum_probs=17.6
Q ss_pred HHHHHHHHH-cCCCEEEEeHHHHHH
Q 017539 114 LRLAKLCLE-RNIPYLGICRGSQVL 137 (369)
Q Consensus 114 ~~li~~~~e-~~iPiLGIClG~QlL 137 (369)
..+++.+.+ .++++-.||-|..++
T Consensus 96 ~~~l~~~~~~~~k~iaaiC~g~~l~ 120 (194)
T 4gdh_A 96 QQVVKEFYKKPNKWIGMICAGTLTA 120 (194)
T ss_dssp HHHHHHHTTCTTCEEEEEGGGGHHH
T ss_pred HHHHHHhhhcCCceEEeecccccch
Confidence 467777655 478999999998443
No 91
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=74.75 E-value=1.9 Score=36.92 Aligned_cols=68 Identities=10% Similarity=0.066 Sum_probs=38.0
Q ss_pred CCcEEEEecCcc-cCcCcccccchhHHHHH----HHHCCCEEEEEcCC-CChhh----hhhhcC-CCCEEEECCCCCCC
Q 017539 9 ILPRVLIVSRRS-VRKNKFVDFVGEYHLDL----IVGYGAVPAIVPRV-SGVHM----LLDSFE-PIHGVLLCEGEDID 76 (369)
Q Consensus 9 ~~P~IgIv~~~~-~~~~~~~~~v~~~~l~~----l~~~Ga~~vivp~~-~~~~~----l~~~l~-~~DGlll~GG~did 76 (369)
+.|+++|++--+ ...+...|.-.....++ +.+.|+.++..... ++.+. +.+.++ .+|-||.+||-++.
T Consensus 4 m~~~v~Ii~~GdEl~~G~i~D~n~~~l~~~~~~~l~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~~DlVittGG~g~~ 82 (167)
T 2g2c_A 4 MHIKSAIIVVSDRISTGTRENKALPLLQRLMSDELQDYSYELISEVVVPEGYDTVVEAIATALKQGARFIITAGGTGIR 82 (167)
T ss_dssp CEEEEEEEEECHHHHHTSSCCCHHHHHHHHHCC----CEEEEEEEEEECSSHHHHHHHHHHHHHTTCSEEEEESCCSSS
T ss_pred CccEEEEEEECCcccCCceeccHHHHHHHhHHhHHHHCCCEEeEEEEeCCCHHHHHHHHHHHHhCCCCEEEECCCCCCC
Confidence 457898886443 33344455444445566 78899887633222 23333 334444 49999999996543
No 92
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor biosynthesis, metal binding protein; 1.95A {Escherichia coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A 1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A 2nrp_A 2nqv_A 2nrs_A 2nqn_A
Probab=74.59 E-value=3.4 Score=40.80 Aligned_cols=67 Identities=13% Similarity=0.107 Sum_probs=42.1
Q ss_pred CcEEEEecCcc-cC-------cCcccccchhHHHHHHHHCCCEEEEEcCC-CChhhh----hhhcCCCCEEEECCCCCCC
Q 017539 10 LPRVLIVSRRS-VR-------KNKFVDFVGEYHLDLIVGYGAVPAIVPRV-SGVHML----LDSFEPIHGVLLCEGEDID 76 (369)
Q Consensus 10 ~P~IgIv~~~~-~~-------~~~~~~~v~~~~l~~l~~~Ga~~vivp~~-~~~~~l----~~~l~~~DGlll~GG~did 76 (369)
+|+|+|++.-+ .. .+...|.-......++++.|+.++..... ++.+.+ .+.++.+|-||.+||.+++
T Consensus 177 ~~rv~iistGdEl~~~g~~~~~G~i~dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~al~~a~~~~DlvittGG~s~g 256 (411)
T 1g8l_A 177 KVRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVSVG 256 (411)
T ss_dssp CCEEEEEEECTTEECTTSCCCSSCEECCHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHHCSEEEECSSSCSS
T ss_pred CCEEEEEEcCccccCCCCCCCCCcEEcCchHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHhhcCCEEEECCCCCCC
Confidence 68999997433 11 34445554455666788899988744322 233333 3344468999999997543
No 93
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=74.22 E-value=13 Score=32.75 Aligned_cols=60 Identities=7% Similarity=-0.082 Sum_probs=39.2
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhh---hhc--CCCCEEEECCC
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLL---DSF--EPIHGVLLCEG 72 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~---~~l--~~~DGlll~GG 72 (369)
.+||++.... .+.+...+....-+.+.+.|..+++.....+.+... +.+ ..+||||+.+.
T Consensus 3 ~~Igvi~~~~--~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 67 (272)
T 3o74_A 3 RTLGFILPDL--ENPSYARIAKQLEQGARARGYQLLIASSDDQPDSERQLQQLFRARRCDALFVASC 67 (272)
T ss_dssp CEEEEEESCT--TCHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred eEEEEEeCCC--cChhHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 3688876442 245555566666778888999999887655433211 111 37999999876
No 94
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=74.20 E-value=5.7 Score=32.59 Aligned_cols=70 Identities=11% Similarity=0.103 Sum_probs=44.1
Q ss_pred hHHHHHHHHCCCEEEEEcCCCChhhhhhhcC--CCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCCccCchh
Q 017539 32 EYHLDLIVGYGAVPAIVPRVSGVHMLLDSFE--PIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDTAIDKEK 109 (369)
Q Consensus 32 ~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~--~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~r 109 (369)
+.+++.+...-...+++|-+.. +.+...++ ++-+|||+||-.+++
T Consensus 42 ~~~~~~~~~~~~~l~I~~G~r~-~~~l~a~~~~~~~~iIlt~g~~~~~-------------------------------- 88 (139)
T 2ioj_A 42 QSALRYLREARNAALVTGGDRS-DLLLTALEMPNVRCLILTGNLEPVQ-------------------------------- 88 (139)
T ss_dssp HHHHHHHHTCSSEEEEEETTCH-HHHHHHTTCTTEEEEEEETTCCCCH--------------------------------
T ss_pred HHHHHHHhcCCCEEEEEcCCHH-HHHHHHHhCCCCcEEEEcCCCCCCH--------------------------------
Confidence 4567777653235666754432 33444444 788999999953221
Q ss_pred hHHHHHHHHHHHHcCCCEEEEeHHHHHHHH
Q 017539 110 DSIELRLAKLCLERNIPYLGICRGSQVLNV 139 (369)
Q Consensus 110 d~~e~~li~~~~e~~iPiLGIClG~QlL~~ 139 (369)
.+++.|.+.++|||-+=...--.+.
T Consensus 89 -----~i~~~A~~~~ipvl~t~~~T~~~~~ 113 (139)
T 2ioj_A 89 -----LVLTKAEERGVPVILTGHDTLTAVS 113 (139)
T ss_dssp -----HHHHHHHHHTCCEEECSSCHHHHHH
T ss_pred -----HHHHHHHHCCCeEEEECCCHHHHHH
Confidence 3456666789999988766554444
No 95
>1wu2_A MOEA protein, molybdopterin biosynthesis MOEA protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.30A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1xi8_A
Probab=73.79 E-value=2.9 Score=41.15 Aligned_cols=68 Identities=18% Similarity=0.175 Sum_probs=37.6
Q ss_pred CcEEEEecCcc-cC---------cCcccccchhHHHHHHHHCCCEEEEEcCC-CChhh----hhhhcCCCCEEEECCCCC
Q 017539 10 LPRVLIVSRRS-VR---------KNKFVDFVGEYHLDLIVGYGAVPAIVPRV-SGVHM----LLDSFEPIHGVLLCEGED 74 (369)
Q Consensus 10 ~P~IgIv~~~~-~~---------~~~~~~~v~~~~l~~l~~~Ga~~vivp~~-~~~~~----l~~~l~~~DGlll~GG~d 74 (369)
+|+|+|++.-+ .. .+...|.-......++++.|+.++..... ++.+. +.+.++.+|-||.+||.+
T Consensus 182 ~prv~IistGdEl~~~~g~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~DlvittGG~s 261 (396)
T 1wu2_A 182 KPKVGIIITGSELIEEPSEEGFKEGKIVETNSIMLQGLVEKFFGEPILYGVLPDDESIIKETLEKAKNECDIVLITGGSA 261 (396)
T ss_dssp CCEEEEEEECTTEESSCCHHHHHTTCEECCHHHHHHHHHHHTTCEEEEEEEECSCHHHHTTHHHHHHHCSEEEECC----
T ss_pred CCEEEEEEcCcccccCCCCcccCCCcEecchHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHhhCCCEEEEeCCCC
Confidence 78999997433 21 13444544445566788899988744322 23333 334445799999999975
Q ss_pred CCC
Q 017539 75 IDP 77 (369)
Q Consensus 75 idp 77 (369)
+++
T Consensus 262 ~g~ 264 (396)
T 1wu2_A 262 FGD 264 (396)
T ss_dssp ---
T ss_pred CCh
Confidence 443
No 96
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=73.79 E-value=14 Score=32.83 Aligned_cols=63 Identities=14% Similarity=0.048 Sum_probs=40.6
Q ss_pred CcEEEEecCccc---CcCcccccchhHHHHHHHHCCCEEEEEcCCCChhh---hhhhc--CCCCEEEECCC
Q 017539 10 LPRVLIVSRRSV---RKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM---LLDSF--EPIHGVLLCEG 72 (369)
Q Consensus 10 ~P~IgIv~~~~~---~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~---l~~~l--~~~DGlll~GG 72 (369)
..+||++..... ..+.+...+.....+.+.+.|..+++.....+.+. +.+.+ ..+||||+.+.
T Consensus 8 ~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~ 78 (292)
T 3k4h_A 8 TKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYS 78 (292)
T ss_dssp CCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCC
T ss_pred CCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCC
Confidence 467888865421 33556666666677788899999888765443322 12222 47999999865
No 97
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2
Probab=73.08 E-value=2.4 Score=41.79 Aligned_cols=67 Identities=15% Similarity=0.191 Sum_probs=40.4
Q ss_pred CcEEEEecCcc-c-------CcCcccccchhHHHHHHHHCCCEEEEEcCC-CChhh----hhhhcCCCCEEEECCCCCCC
Q 017539 10 LPRVLIVSRRS-V-------RKNKFVDFVGEYHLDLIVGYGAVPAIVPRV-SGVHM----LLDSFEPIHGVLLCEGEDID 76 (369)
Q Consensus 10 ~P~IgIv~~~~-~-------~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~-~~~~~----l~~~l~~~DGlll~GG~did 76 (369)
+|+|+|++.-+ . ..+...|.-......++++.|+.++..... ++.+. +.+.++.+|-||.+||.+++
T Consensus 180 ~prv~IistGdEl~~~g~~~~~G~i~DsN~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~DlVittGG~s~g 259 (402)
T 1uz5_A 180 KPKVAVISTGNEIVPPGNELKPGQIYDINGRALCDAINELGGEGIFMGVARDDKESLKALIEKAVNVGDVVVISGGASGG 259 (402)
T ss_dssp CCEEEEEEECTTEECTTSCCCTTCEECCHHHHHHHHHHHHTSEEEEEEEECSSHHHHHHHHHHHHHHCSEEEEECCC---
T ss_pred CCEEEEEEcCccccCCCCCCCCCcEEcchHHHHHHHHHhCCCeEEEEEEeCCCHHHHHHHHHHHhhCCCEEEEcCCCCCC
Confidence 78999997433 1 134445554445566788899988754322 23333 33344468999999996543
No 98
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=72.77 E-value=10 Score=33.76 Aligned_cols=59 Identities=5% Similarity=-0.049 Sum_probs=37.6
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEG 72 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG 72 (369)
..+||++... ..+.+...+-....+.+.+.|..+++.....+.+..... .+||||+.+.
T Consensus 8 ~~~Igvi~~~--~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~--~vdgiI~~~~ 66 (277)
T 3cs3_A 8 TNIIGVYLAD--YGGSFYGELLEGIKKGLALFDYEMIVCSGKKSHLFIPEK--MVDGAIILDW 66 (277)
T ss_dssp CCEEEEEECS--SCTTTHHHHHHHHHHHHHTTTCEEEEEESTTTTTCCCTT--TCSEEEEECT
T ss_pred CcEEEEEecC--CCChhHHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHhhc--cccEEEEecC
Confidence 4578888643 224455555555666778899988877654433322222 7999999865
No 99
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=72.57 E-value=8.4 Score=32.92 Aligned_cols=66 Identities=14% Similarity=0.203 Sum_probs=40.7
Q ss_pred CcEEEEecCcc------cCcCcccccchhHHHHHHHHCCCEEEEEcCC-CChhhhhhh------cCCCCEEEECCCCCC
Q 017539 10 LPRVLIVSRRS------VRKNKFVDFVGEYHLDLIVGYGAVPAIVPRV-SGVHMLLDS------FEPIHGVLLCEGEDI 75 (369)
Q Consensus 10 ~P~IgIv~~~~------~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~-~~~~~l~~~------l~~~DGlll~GG~di 75 (369)
.++|+|++--+ ...+...|--+....++|.+.|+.++-.... ++.+.+.+. .+.+|-||.+||-+.
T Consensus 15 ~~~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittGG~g~ 93 (178)
T 3iwt_A 15 SLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGTGY 93 (178)
T ss_dssp CCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCCSS
T ss_pred CCEEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecCCccc
Confidence 46888886322 1223445665666778899999998744322 233433322 246899999999643
No 100
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=72.15 E-value=4.7 Score=34.40 Aligned_cols=68 Identities=16% Similarity=0.086 Sum_probs=37.8
Q ss_pred CCCcEEEEecCcc-cCcCcccccchhHHHHHHHHC-----CCEEEEEcCC-CChhhh----hhhc--CCCCEEEECCCCC
Q 017539 8 VILPRVLIVSRRS-VRKNKFVDFVGEYHLDLIVGY-----GAVPAIVPRV-SGVHML----LDSF--EPIHGVLLCEGED 74 (369)
Q Consensus 8 ~~~P~IgIv~~~~-~~~~~~~~~v~~~~l~~l~~~-----Ga~~vivp~~-~~~~~l----~~~l--~~~DGlll~GG~d 74 (369)
-.+|+|+|++--+ ...+...+.-.....+.+.+. |+.++..... ++.+.+ .+.+ +.+|-||.+||.+
T Consensus 3 ~~~~rv~IistGde~~~G~~~d~n~~~l~~~l~~~~~~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g 82 (167)
T 1uuy_A 3 GPEYKVAILTVSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPDEVERIKDILQKWSDVDEMDLILTLGGTG 82 (167)
T ss_dssp CCSEEEEEEEECHHHHTTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCS
T ss_pred CCCcEEEEEEECCcccCCCCccCcHHHHHHHHHhccccCCCcEEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 4578999997433 222333332223334566666 8877643322 233333 3333 3699999999965
Q ss_pred C
Q 017539 75 I 75 (369)
Q Consensus 75 i 75 (369)
+
T Consensus 83 ~ 83 (167)
T 1uuy_A 83 F 83 (167)
T ss_dssp S
T ss_pred C
Confidence 4
No 101
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=71.50 E-value=18 Score=31.77 Aligned_cols=60 Identities=13% Similarity=0.087 Sum_probs=37.8
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCC--CChhh----hhhhc-CC-CCEEEECCC
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRV--SGVHM----LLDSF-EP-IHGVLLCEG 72 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~--~~~~~----l~~~l-~~-~DGlll~GG 72 (369)
|+||++.... .+.+...+....-+.+.+.|..+++.... .+.+. +.... .. +||||+.+.
T Consensus 1 ~~Ig~i~~~~--~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~ 68 (276)
T 3ksm_A 1 PKLLLVLKGD--SNAYWRQVYLGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPN 68 (276)
T ss_dssp CEEEEECSCS--SSTHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCS
T ss_pred CeEEEEeCCC--CChHHHHHHHHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 5788886542 24555556666677788899998887632 33321 21111 26 999999875
No 102
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=71.21 E-value=14 Score=32.84 Aligned_cols=64 Identities=8% Similarity=0.068 Sum_probs=41.1
Q ss_pred CCCCcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhh---hhhc--CCCCEEEECCC
Q 017539 7 SVILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHML---LDSF--EPIHGVLLCEG 72 (369)
Q Consensus 7 ~~~~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l---~~~l--~~~DGlll~GG 72 (369)
+....+||++.... .+.+...+-...-+.+.+.|..+++.....+.+.. .+.+ ..+||||+.+.
T Consensus 4 ~~~s~~Igvi~~~~--~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 72 (276)
T 3jy6_A 4 TQSSKLIAVIVANI--DDYFSTELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSF 72 (276)
T ss_dssp -CCCCEEEEEESCT--TSHHHHHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESS
T ss_pred CCCCcEEEEEeCCC--CchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecC
Confidence 34456888886442 34555555666677788899999988765543321 1111 37999999876
No 103
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=70.56 E-value=20 Score=32.15 Aligned_cols=61 Identities=7% Similarity=-0.015 Sum_probs=39.5
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCC--CChhh----hhhhc-CCCCEEEECCC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRV--SGVHM----LLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~--~~~~~----l~~~l-~~~DGlll~GG 72 (369)
+-+||++.... .+.+...+.....+.+.+.|..+++.... .+.+. +.... ..+||||+.+.
T Consensus 3 ~~~Igvi~~~~--~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 70 (297)
T 3rot_A 3 RDKYYLITHGS--QDPYWTSLFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIP 70 (297)
T ss_dssp CCEEEEECSCC--CSHHHHHHHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCC
T ss_pred eEEEEEEecCC--CCchHHHHHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 35788886543 35566666666777888899999887644 23222 21111 37999999865
No 104
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=70.35 E-value=18 Score=32.67 Aligned_cols=61 Identities=3% Similarity=-0.063 Sum_probs=39.4
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhh---c--CCCCEEEECCC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDS---F--EPIHGVLLCEG 72 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~---l--~~~DGlll~GG 72 (369)
+.+||++.... .+.+...+....-+.+.+.|..+++.....+.+...+. + ..+||||+.+.
T Consensus 2 ~~~Igvi~~~~--~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 67 (313)
T 3m9w_A 2 EVKIGMAIDDL--RLERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPY 67 (313)
T ss_dssp -CEEEEEESCC--SSSTTHHHHHHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred CcEEEEEeCCC--CChHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 35788886532 24555556666777888999999888765443321111 1 37999999875
No 105
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=70.20 E-value=14 Score=33.21 Aligned_cols=64 Identities=13% Similarity=-0.021 Sum_probs=40.1
Q ss_pred CCcEEEEecCcc---cCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhh---hhhhc--CCCCEEEECCC
Q 017539 9 ILPRVLIVSRRS---VRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM---LLDSF--EPIHGVLLCEG 72 (369)
Q Consensus 9 ~~P~IgIv~~~~---~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~---l~~~l--~~~DGlll~GG 72 (369)
...+|||+.... ...+.+...+-...-+.+.+.|..+++.....+.+. +.+.+ ..+||||+.+.
T Consensus 6 ~s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~ 77 (295)
T 3hcw_A 6 QTYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYS 77 (295)
T ss_dssp CSCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCC
T ss_pred CCcEEEEEeecCCcccccChHHHHHHHHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCc
Confidence 446899986321 223555555666667788889999887765433221 22222 47999999865
No 106
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=69.59 E-value=16 Score=33.17 Aligned_cols=61 Identities=7% Similarity=-0.106 Sum_probs=40.4
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhh----hhhc-CCCCEEEECCC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHML----LDSF-EPIHGVLLCEG 72 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l----~~~l-~~~DGlll~GG 72 (369)
..+|||+.... .+.+...+....-+.+.+.|..+++.....+.+.. ...+ ..+||||+.+.
T Consensus 3 ~~~Igvi~~~~--~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~ 68 (330)
T 3uug_A 3 KGSVGIAMPTK--SSARWIDDGNNIVKQLQEAGYKTDLQYADDDIPNQLSQIENMVTKGVKVLVIASI 68 (330)
T ss_dssp CCEEEEEECCS--SSTHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCS
T ss_pred CcEEEEEeCCC--cchHHHHHHHHHHHHHHHcCCEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEEcC
Confidence 46888886542 24555666666778888999999888755443321 1111 37999999865
No 107
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=68.96 E-value=27 Score=30.97 Aligned_cols=60 Identities=10% Similarity=0.055 Sum_probs=37.6
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhhc-CCCCEEEECCC
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~----l~~~l-~~~DGlll~GG 72 (369)
.+||++.... .+.+...+.....+.+.+.|..+++.....+.+. +.... ..+||||+.+.
T Consensus 3 ~~Ig~i~~~~--~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 67 (290)
T 2fn9_A 3 GKMAIVISTL--NNPWFVVLAETAKQRAEQLGYEATIFDSQNDTAKESAHFDAIIAAGYDAIIFNPT 67 (290)
T ss_dssp CEEEEEESCS--SSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred eEEEEEeCCC--CChHHHHHHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 4688876432 2455555556666778889999888765444322 22111 37999999865
No 108
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=67.83 E-value=15 Score=32.88 Aligned_cols=62 Identities=15% Similarity=0.106 Sum_probs=40.7
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhh---hhhc--CCCCEEEECCCC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHML---LDSF--EPIHGVLLCEGE 73 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l---~~~l--~~~DGlll~GG~ 73 (369)
..+||++... ..+.+...+-...-+.+.+.|..+++.....+.+.. .+.+ ..+||||+.+..
T Consensus 8 ~~~Igvv~~~--~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 74 (291)
T 3egc_A 8 SNVVGLIVSD--IENVFFAEVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSE 74 (291)
T ss_dssp CCEEEEEESC--TTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCS
T ss_pred CcEEEEEECC--CcchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 4678888643 234555556666677888899999988765543321 1112 379999998763
No 109
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=67.73 E-value=19 Score=33.01 Aligned_cols=63 Identities=3% Similarity=-0.064 Sum_probs=41.1
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhh---hhc--CCCCEEEECCC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLL---DSF--EPIHGVLLCEG 72 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~---~~l--~~~DGlll~GG 72 (369)
..+||++.......+.+...+-....+.+.+.|..+++.....+.+... +.+ ..+||||+.+.
T Consensus 61 ~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 128 (338)
T 3dbi_A 61 TQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPR 128 (338)
T ss_dssp CSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCC
Confidence 4678888654223455666666667778889999998887554433211 111 37999999865
No 110
>2fts_A Gephyrin; gephyrin, neuroreceptor anchoring, structu protein; 2.41A {Rattus norvegicus} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 2fu3_A 1t3e_A
Probab=66.76 E-value=4.2 Score=40.23 Aligned_cols=66 Identities=17% Similarity=0.124 Sum_probs=40.7
Q ss_pred CcEEEEecCcc-cC-------cCcccccchhHHHHHHHHCCCEEEEEcCC-CChhhh----hhhcCCCCEEEECCCCCC
Q 017539 10 LPRVLIVSRRS-VR-------KNKFVDFVGEYHLDLIVGYGAVPAIVPRV-SGVHML----LDSFEPIHGVLLCEGEDI 75 (369)
Q Consensus 10 ~P~IgIv~~~~-~~-------~~~~~~~v~~~~l~~l~~~Ga~~vivp~~-~~~~~l----~~~l~~~DGlll~GG~di 75 (369)
+|+|+|++.-+ .. .+...+.-......++++.|+.++.+... ++.+.+ .+.++.+|-||.+||.++
T Consensus 181 ~prv~IistGdEl~~~g~~~~~G~i~dsN~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~DlVittGG~s~ 259 (419)
T 2fts_A 181 FPVVAVMSTGNELLNPEDDLLPGKIRDSNRSTLLATIQEHGYPTINLGIVGDNPDDLLNALNEGISRADVIITSGGVSM 259 (419)
T ss_dssp CCCEEEEEECTTEECTTSCCCTTCEECCHHHHHHHHHHTTTCCEEEEEEECSSHHHHHHHHHHHHHHCSEEEEESCCSS
T ss_pred CCEEEEEEechhccCCCCCCCCCcEecCchHHHHHHHHHCCCEEEEEeecCCCHHHHHHHHHHHHhcCCEEEEcCCCcC
Confidence 68999997432 11 34445544444556788899988744332 233333 334446899999999654
No 111
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=65.42 E-value=16 Score=33.49 Aligned_cols=65 Identities=6% Similarity=-0.071 Sum_probs=39.2
Q ss_pred CCCCCcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhhc-CC--CCEEEECCC
Q 017539 6 LSVILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDSF-EP--IHGVLLCEG 72 (369)
Q Consensus 6 ~~~~~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~----l~~~l-~~--~DGlll~GG 72 (369)
|+....+||++... ..+.+...+....-+.+.+.|..+++.....+.+. +.... .. +||||+.+.
T Consensus 1 ~~~~s~~Igvi~~~--~~~~~~~~~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~~~~vdgiIi~~~ 72 (332)
T 2rjo_A 1 MSLGQTTLACSFRS--LTNPYYTAFNKGAQSFAKSVGLPYVPLTTEGSSEKGIADIRALLQKTGGNLVLNVDPN 72 (332)
T ss_dssp --CCCCEEEEEESC--TTSHHHHHHHHHHHHHHHHHTCCEEEEECTTCHHHHHHHHHHHHHHTTTCEEEEECCS
T ss_pred CCCCccEEEEEecC--CCcHHHHHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHCCCCCCEEEEeCC
Confidence 34455688888643 22445555555566777888999888765444322 22111 36 999999865
No 112
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=65.41 E-value=25 Score=31.14 Aligned_cols=63 Identities=3% Similarity=-0.052 Sum_probs=37.5
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhhc-CCCCEEEECCC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~----l~~~l-~~~DGlll~GG 72 (369)
..+||++.......+.+...+.....+.+.+.|..+++.....+.+. +.... ..+||||+.+.
T Consensus 19 ~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~ 86 (296)
T 3brq_A 19 TQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPR 86 (296)
T ss_dssp CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEEECCTTSHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred CceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 45788886432123445555555566677889999888765444321 22211 47999999865
No 113
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=65.28 E-value=13 Score=33.06 Aligned_cols=66 Identities=9% Similarity=0.026 Sum_probs=37.4
Q ss_pred CCCCcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcC--CCChhh----hhhhc-CCCCEEEECCC
Q 017539 7 SVILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPR--VSGVHM----LLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 7 ~~~~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~--~~~~~~----l~~~l-~~~DGlll~GG 72 (369)
+....+||++.......+.+...+-...-+.+.+.|..++++.. ..+.+. +.... ..+||||+.+.
T Consensus 2 ~~~~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~ 74 (289)
T 3brs_A 2 SLKQYYMICIPKVLDDSSDFWSVLVEGAQMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAA 74 (289)
T ss_dssp ---CCEEEEECSCCCSSSHHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCS
T ss_pred CCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 44456899986532211445444555556677788998887754 233221 11111 47999999875
No 114
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=63.95 E-value=38 Score=31.01 Aligned_cols=61 Identities=15% Similarity=-0.054 Sum_probs=38.3
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhh----c-CCCCEEEECCC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDS----F-EPIHGVLLCEG 72 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~----l-~~~DGlll~GG 72 (369)
..+||++.... .+.+...+-...-+.+.+.|..+++.....+.+...+. . ..+||||+.+.
T Consensus 62 ~~~Igvi~~~~--~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~ 127 (339)
T 3h5o_A 62 SRTVLVLIPSL--ANTVFLETLTGIETVLDAAGYQMLIGNSHYDAGQELQLLRAYLQHRPDGVLITGL 127 (339)
T ss_dssp -CEEEEEESCS--TTCTTHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred CCEEEEEeCCC--CCHHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHcCCCCEEEEeCC
Confidence 35788875432 24455555556667788899999887765443322211 1 37999999875
No 115
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=63.66 E-value=33 Score=30.63 Aligned_cols=60 Identities=5% Similarity=-0.009 Sum_probs=36.3
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEE-cCCCChhhhhhhc-----CCCCEEEECCC
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIV-PRVSGVHMLLDSF-----EPIHGVLLCEG 72 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~viv-p~~~~~~~l~~~l-----~~~DGlll~GG 72 (369)
.+|+++.... .+.+...+-...-+.+.+.|..++++ ....+.+...+.+ ..+||||+.+.
T Consensus 5 ~~I~~i~~~~--~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 70 (305)
T 3g1w_A 5 ETYMMITFQS--GMDYWKRCLKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAI 70 (305)
T ss_dssp CEEEEEESST--TSTHHHHHHHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCS
T ss_pred ceEEEEEccC--CChHHHHHHHHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 4666665432 24555555666677788899999884 4333432211111 37999999875
No 116
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=63.43 E-value=29 Score=31.02 Aligned_cols=61 Identities=11% Similarity=0.106 Sum_probs=38.4
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhhc-CCCCEEEECCC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~----l~~~l-~~~DGlll~GG 72 (369)
..+|||+... ..+.+...+-....+.+.+.|..+++.....+.+. +.... ..+||||+.+.
T Consensus 16 s~~Igvi~~~--~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 81 (289)
T 2fep_A 16 TTTVGVIIPD--ISSIFYSELARGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGG 81 (289)
T ss_dssp CCEEEEEESC--TTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CCeEEEEeCC--CCCchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecC
Confidence 4578888643 22455555555666778889999887765444322 11111 47999999865
No 117
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=63.07 E-value=28 Score=31.02 Aligned_cols=61 Identities=5% Similarity=-0.098 Sum_probs=38.0
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChh-------hhhhhc-CCCCEEEECCC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVH-------MLLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~-------~l~~~l-~~~DGlll~GG 72 (369)
..+||++.... .+.+...+....-+.+.+.|..+++.....+.+ .+.... ..+||||+.+.
T Consensus 8 ~~~Ig~i~~~~--~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 76 (290)
T 2rgy_A 8 LGIIGLFVPTF--FGSYYGTILKQTDLELRAVHRHVVVATGCGESTPREQALEAVRFLIGRDCDGVVVISH 76 (290)
T ss_dssp CCEEEEECSCS--CSHHHHHHHHHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CCeEEEEeCCC--CCchHHHHHHHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHHHHhcCccEEEEecC
Confidence 35788886432 344555555566677888999988776543322 122222 37999999875
No 118
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=62.63 E-value=28 Score=31.79 Aligned_cols=60 Identities=10% Similarity=0.049 Sum_probs=35.6
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHC-CCEEEEEcCCCChhh----hhhhc-CCCCEEEECCC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGY-GAVPAIVPRVSGVHM----LLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~-Ga~~vivp~~~~~~~----l~~~l-~~~DGlll~GG 72 (369)
..+||++... .+.+...+.....+.+.+. |..+++.....+.+. +.... ..+||||+.+.
T Consensus 6 ~~~Igvi~~~---~~~~~~~~~~gi~~~a~~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 71 (325)
T 2x7x_A 6 HFRIGVAQCS---DDSWRHKMNDEILREAMFYNGVSVEIRSAGDDNSKQAEDVHYFMDEGVDLLIISAN 71 (325)
T ss_dssp CCEEEEEESC---CSHHHHHHHHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CeEEEEEecC---CCHHHHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 3578887643 3444444444455566677 888887765444321 22211 47999999865
No 119
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=62.34 E-value=35 Score=30.38 Aligned_cols=62 Identities=8% Similarity=-0.163 Sum_probs=37.7
Q ss_pred cEEEEecCc-c-cCcCcccccchhHHHHHHHHCCCEEEEEcCCCCh----hhhhhhc-CCCCEEEECCC
Q 017539 11 PRVLIVSRR-S-VRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGV----HMLLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 11 P~IgIv~~~-~-~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~----~~l~~~l-~~~DGlll~GG 72 (369)
.+||++... . ...+.+...+.....+.+.+.|..+++.....+. +.+.... ..+||||+.+.
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 73 (287)
T 3bbl_A 5 FMIGYSWTQTEPGQVNHILDQFLSSMVREAGAVNYFVLPFPFSEDRSQIDIYRDLIRSGNVDGFVLSSI 73 (287)
T ss_dssp CEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHTTCEEEECCCCSSTTCCHHHHHHHHTTCCSEEEECSC
T ss_pred eEEEEEecccccccCChhHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHHHHHHHHHcCCCCEEEEeec
Confidence 478888643 1 0134555555666667788899988876543322 1222222 37999999865
No 120
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=62.07 E-value=29 Score=31.24 Aligned_cols=61 Identities=11% Similarity=-0.086 Sum_probs=38.8
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhh---hhhhc--CCCCEEEECCC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM---LLDSF--EPIHGVLLCEG 72 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~---l~~~l--~~~DGlll~GG 72 (369)
..+||++... ..+.+...+-...-+.+.+.|..+++.....+.+. +.+.+ ..+||||+.+.
T Consensus 15 s~~Igvi~~~--~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 80 (303)
T 3kke_A 15 SGTIGLIVPD--VNNAVFADMFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRR 80 (303)
T ss_dssp --CEEEEESC--TTSTTHHHHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHSCSSSEEEECCC
T ss_pred CCEEEEEeCC--CcChHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecC
Confidence 3568887643 23455555666667788889999998876544322 12222 37999999876
No 121
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=61.99 E-value=20 Score=32.32 Aligned_cols=64 Identities=13% Similarity=0.068 Sum_probs=39.5
Q ss_pred CCcEEEEecCccc---CcCcccccchhHHHHHHHHCCCEEEEEcCCCChhh---hhhhc--CCCCEEEECCC
Q 017539 9 ILPRVLIVSRRSV---RKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM---LLDSF--EPIHGVLLCEG 72 (369)
Q Consensus 9 ~~P~IgIv~~~~~---~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~---l~~~l--~~~DGlll~GG 72 (369)
...+||++..... ..+.+...+-...-+.+.+.|..+++.....+.+. +.+.+ ..+||||+.+.
T Consensus 21 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 92 (305)
T 3huu_A 21 KTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQSKSVDGFILLYS 92 (305)
T ss_dssp CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHTTCCSEEEESSC
T ss_pred CCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCC
Confidence 3467888865411 23455555556666778888998888765443221 12222 37999999875
No 122
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=61.67 E-value=29 Score=30.56 Aligned_cols=61 Identities=10% Similarity=-0.015 Sum_probs=37.6
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhhc-CCCCEEEECCC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~----l~~~l-~~~DGlll~GG 72 (369)
+++||++... ..+.+...+....-+.+.+.|..+++.....+.+. +.... ..+||||+.+.
T Consensus 1 ~~~Igvi~~~--~~~~f~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 66 (271)
T 2dri_A 1 KDTIALVVST--LNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPT 66 (271)
T ss_dssp CCEEEEEESC--SSSHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHTTTTEEEEEECCS
T ss_pred CcEEEEEecC--CCCHHHHHHHHHHHHHHHHcCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 3578888643 23455555566666778888998887764434321 22222 36999999754
No 123
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=60.38 E-value=35 Score=30.30 Aligned_cols=61 Identities=15% Similarity=0.035 Sum_probs=38.3
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhhc-CCCCEEEECCC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~----l~~~l-~~~DGlll~GG 72 (369)
..+||++... ..+.+...+-....+.+.+.|..+++.....+.+. +.... ..+||||+.+.
T Consensus 8 ~~~Igvi~~~--~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 73 (285)
T 3c3k_A 8 TGMLLVMVSN--IANPFCAAVVKGIEKTAEKNGYRILLCNTESDLARSRSCLTLLSGKMVDGVITMDA 73 (285)
T ss_dssp CCEEEEEESC--TTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHTHHHHTTCCSEEEECCC
T ss_pred CCEEEEEeCC--CCCchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 3578888643 22455555555566778889999888765444322 12111 37999999865
No 124
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=58.97 E-value=38 Score=30.00 Aligned_cols=60 Identities=10% Similarity=0.005 Sum_probs=36.3
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhhc-CCCCEEEECCC
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~----l~~~l-~~~DGlll~GG 72 (369)
.+||++... ..+.+...+....-+.+.+.|..+++.....+.+. +...+ ..+||||+.+.
T Consensus 2 ~~Igvi~~~--~~~~f~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 66 (283)
T 2ioy_A 2 KTIGLVIST--LNNPFFVTLKNGAEEKAKELGYKIIVEDSQNDSSKELSNVEDLIQQKVDVLLINPV 66 (283)
T ss_dssp CEEEEEESC--SSSHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred eEEEEEecC--CCCHHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 367887543 22455555555566677888999887765444322 22212 37999999754
No 125
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=58.90 E-value=21 Score=33.56 Aligned_cols=62 Identities=13% Similarity=0.002 Sum_probs=38.4
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCC--hhhh-hhh-cCCCCEEEECCC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSG--VHML-LDS-FEPIHGVLLCEG 72 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~--~~~l-~~~-l~~~DGlll~GG 72 (369)
+.+++|+.++...++..... .....+++.++|..+.+...... ...+ .+. .+.+|.||..||
T Consensus 24 m~~i~vI~NP~sg~~~~~~~-~~~i~~~L~~~g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~GG 89 (337)
T 2qv7_A 24 RKRARIIYNPTSGKEQFKRE-LPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGG 89 (337)
T ss_dssp CEEEEEEECTTSTTSCHHHH-HHHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEEC
T ss_pred cceEEEEECCCCCCCchHHH-HHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhcCCCEEEEEcC
Confidence 45788988886544333222 24567788899988777654332 1111 122 246899999999
No 126
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=58.35 E-value=35 Score=30.35 Aligned_cols=61 Identities=8% Similarity=0.015 Sum_probs=38.2
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhhc-CCCCEEEECCC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~----l~~~l-~~~DGlll~GG 72 (369)
..+||++... ..+.+...+....-+.+.+.|..+++.....+.+. +.... ..+||||+.+.
T Consensus 20 ~~~Ig~i~~~--~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~ 85 (293)
T 2iks_A 20 TRSIGLVIPD--LENTSYTRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQVDAIIVSTS 85 (293)
T ss_dssp CCEEEEEESC--SCSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CcEEEEEeCC--CcCcHHHHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4578888643 22445555555566778889999887765444322 22111 37999999875
No 127
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=58.30 E-value=39 Score=30.31 Aligned_cols=60 Identities=7% Similarity=-0.065 Sum_probs=35.8
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhhc-CCCCEEEECCC
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~----l~~~l-~~~DGlll~GG 72 (369)
.+||++.... .+.+...+....-+.+.+.|..+++.....+.+. +.... ..+||||+.+.
T Consensus 3 ~~Ig~i~~~~--~~~~~~~~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 67 (306)
T 2vk2_A 3 LTVGFSQVGS--ESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPV 67 (306)
T ss_dssp CEEEEEECCC--CSHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCS
T ss_pred eEEEEEeCCC--CCHHHHHHHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4788886542 2334444444455677788999887765444322 11111 37999999865
No 128
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=56.28 E-value=51 Score=29.40 Aligned_cols=63 Identities=8% Similarity=0.018 Sum_probs=39.1
Q ss_pred CcEEEEecCcc--cCcCcccccchhHHHHHHHHCCCEEEEEcCCC--Chhhhhhhc--CCCCEEEECCC
Q 017539 10 LPRVLIVSRRS--VRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS--GVHMLLDSF--EPIHGVLLCEG 72 (369)
Q Consensus 10 ~P~IgIv~~~~--~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~--~~~~l~~~l--~~~DGlll~GG 72 (369)
..+||++.... ...+.+..-+-...-+.+.+.|..+++..... ....+.+.+ ..+||||+.+.
T Consensus 6 s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~ 74 (294)
T 3qk7_A 6 TDAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHT 74 (294)
T ss_dssp CCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSC
T ss_pred cceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCC
Confidence 35788886421 22345555555666677888999998876442 122233333 37999999876
No 129
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=56.17 E-value=66 Score=27.31 Aligned_cols=56 Identities=16% Similarity=0.237 Sum_probs=41.8
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCC------------------CChhhhhhhcCCCCEEEECC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRV------------------SGVHMLLDSFEPIHGVLLCE 71 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~------------------~~~~~l~~~l~~~DGlll~G 71 (369)
+++|+|+.-. .+++...++.+.+.|..++.+-+. .+.+.+.+.++.+|.||-+-
T Consensus 4 m~~ilItGat--------G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a 75 (227)
T 3dhn_A 4 VKKIVLIGAS--------GFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKVKKADVSSLDEVCEVCKGADAVISAF 75 (227)
T ss_dssp CCEEEEETCC--------HHHHHHHHHHHHTTTCEEEEECSCGGGCCCCCTTEEEECCCTTCHHHHHHHHTTCSEEEECC
T ss_pred CCEEEEEcCC--------chHHHHHHHHHHHCCCEEEEEEcCcccchhccCceEEEEecCCCHHHHHHHhcCCCEEEEeC
Confidence 3578887654 578888999999999888877543 13455667788899999987
Q ss_pred CC
Q 017539 72 GE 73 (369)
Q Consensus 72 G~ 73 (369)
|.
T Consensus 76 ~~ 77 (227)
T 3dhn_A 76 NP 77 (227)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 130
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=55.94 E-value=36 Score=30.31 Aligned_cols=60 Identities=5% Similarity=-0.054 Sum_probs=36.6
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHHCCC-EEEEEcCCCChhh----hhhhc-CCCCEEEECCC
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGA-VPAIVPRVSGVHM----LLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga-~~vivp~~~~~~~----l~~~l-~~~DGlll~GG 72 (369)
.+||++... ..+.+...+.....+.+.+.|. .+++.....+.+. +.... ..+||||+.+.
T Consensus 3 ~~Igvi~~~--~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~ 68 (309)
T 2fvy_A 3 TRIGVTIYK--YDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLV 68 (309)
T ss_dssp EEEEEEESC--TTSHHHHHHHHHHHHHHHTCTTEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred cEEEEEecc--CCcHHHHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 478888643 2244555555566677888998 7777665434321 22111 47999999865
No 131
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=55.93 E-value=27 Score=28.22 Aligned_cols=91 Identities=14% Similarity=0.036 Sum_probs=50.4
Q ss_pred hhHHHHHHHHCCCEEEEEcCCCC-------hhhhhhhcCCCCEEEECCCCCCCCCCccccCCCCChhHHHHHHhhcCCCC
Q 017539 31 GEYHLDLIVGYGAVPAIVPRVSG-------VHMLLDSFEPIHGVLLCEGEDIDPSLYEAETSNLSPEELEEIRRLHTSDT 103 (369)
Q Consensus 31 ~~~~l~~l~~~Ga~~vivp~~~~-------~~~l~~~l~~~DGlll~GG~didp~~y~~~~~~~~~~~~~~i~~~~~~~~ 103 (369)
+..-++.|.+.|..+.+|....+ ...+.++-+ +|-+++.=.+..-| +-++++-++.....
T Consensus 20 g~~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~dlp~-vDlavi~~p~~~v~------------~~v~e~~~~g~k~v 86 (122)
T 3ff4_A 20 AYLAAERLKSHGHEFIPVGRKKGEVLGKTIINERPVIEG-VDTVTLYINPQNQL------------SEYNYILSLKPKRV 86 (122)
T ss_dssp HHHHHHHHHHHTCCEEEESSSCSEETTEECBCSCCCCTT-CCEEEECSCHHHHG------------GGHHHHHHHCCSEE
T ss_pred HHHHHHHHHHCCCeEEEECCCCCcCCCeeccCChHHCCC-CCEEEEEeCHHHHH------------HHHHHHHhcCCCEE
Confidence 34456778888887777754322 122333334 78777764432112 12333333333211
Q ss_pred ccCchhhHHHHHHHHHHHHcCCCEEEEeHHHHH
Q 017539 104 AIDKEKDSIELRLAKLCLERNIPYLGICRGSQV 136 (369)
Q Consensus 104 ~~~~~rd~~e~~li~~~~e~~iPiLGIClG~Ql 136 (369)
.+... ..+.++++.|.+.++.++|=|+|+++
T Consensus 87 ~~~~G--~~~~e~~~~a~~~Girvv~nC~gv~l 117 (122)
T 3ff4_A 87 IFNPG--TENEELEEILSENGIEPVIGCTLVML 117 (122)
T ss_dssp EECTT--CCCHHHHHHHHHTTCEEEESCHHHHH
T ss_pred EECCC--CChHHHHHHHHHcCCeEECCcCeEEe
Confidence 11111 11246778888899999999999876
No 132
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=55.61 E-value=36 Score=31.47 Aligned_cols=61 Identities=8% Similarity=-0.114 Sum_probs=37.7
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhc-----CCCCEEEECCC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSF-----EPIHGVLLCEG 72 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l-----~~~DGlll~GG 72 (369)
..+||++.... .+.+...+-...-+.+.+.|..+++.....+.+...+.+ ..+||||+.+.
T Consensus 70 ~~~Igvi~~~~--~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~ 135 (355)
T 3e3m_A 70 SGFVGLLLPSL--NNLHFAQTAQSLTDVLEQGGLQLLLGYTAYSPEREEQLVETMLRRRPEAMVLSYD 135 (355)
T ss_dssp -CEEEEEESCS--BCHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred CCEEEEEeCCC--CchHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCC
Confidence 35788875432 244444455556677888999998887654433221111 37999999865
No 133
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=55.47 E-value=49 Score=30.34 Aligned_cols=61 Identities=10% Similarity=-0.104 Sum_probs=38.1
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhh----c-CCCCEEEECCC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDS----F-EPIHGVLLCEG 72 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~----l-~~~DGlll~GG 72 (369)
..+||++.... .+.+...+-...-+.+.+.|..+++.....+.+...+. + ..+||||+.+.
T Consensus 68 ~~~Ig~i~~~~--~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~ 133 (344)
T 3kjx_A 68 VNLVAVIIPSL--SNMVFPEVLTGINQVLEDTELQPVVGVTDYLPEKEEKVLYEMLSWRPSGVIIAGL 133 (344)
T ss_dssp CSEEEEEESCS--SSSSHHHHHHHHHHHHTSSSSEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred CCEEEEEeCCC--CcHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEECC
Confidence 45788886432 24455555555666777889999887655444322221 1 37999999864
No 134
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=54.74 E-value=20 Score=31.66 Aligned_cols=59 Identities=14% Similarity=0.157 Sum_probs=37.8
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhh---hhhhc--CCCCEEEECC
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM---LLDSF--EPIHGVLLCE 71 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~---l~~~l--~~~DGlll~G 71 (369)
.+||++... ..+.+..-+.....+.+.+.|..+++.....+.+. +.+.+ ..+||||+.+
T Consensus 9 ~~Ig~i~~~--~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~ 72 (277)
T 3e61_A 9 KLIGLLLPD--MSNPFFTLIARGVEDVALAHGYQVLIGNSDNDIKKAQGYLATFVSHNCTGMISTA 72 (277)
T ss_dssp -CEEEEESC--TTSHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSEEEECG
T ss_pred CEEEEEECC--CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEec
Confidence 568887643 22455555566667788889999988876555332 11212 3799999986
No 135
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=54.65 E-value=36 Score=30.32 Aligned_cols=17 Identities=18% Similarity=0.440 Sum_probs=15.5
Q ss_pred HHHHHHHHcCCCEEEEe
Q 017539 115 RLAKLCLERNIPYLGIC 131 (369)
Q Consensus 115 ~li~~~~e~~iPiLGIC 131 (369)
.++++|...++|+.|+|
T Consensus 129 ~ai~EA~~l~IPvIalv 145 (208)
T 1vi6_A 129 QAVSEATAVGIPVVALC 145 (208)
T ss_dssp HHHHHHHHTTCCEEEEE
T ss_pred hHHHHHHHhCCCEEEEe
Confidence 57889999999999999
No 136
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=54.37 E-value=60 Score=29.15 Aligned_cols=59 Identities=8% Similarity=0.103 Sum_probs=35.2
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEc-CCCChhh----hhhhc-CCCCEEEECCC
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVP-RVSGVHM----LLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp-~~~~~~~----l~~~l-~~~DGlll~GG 72 (369)
.+||++.... .+ +...+....-+.+.+.|..++++. ...+.+. +.... ..+||||+.+.
T Consensus 2 ~~Ig~i~~~~--~~-~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 66 (313)
T 2h3h_A 2 LTIGVIGKSV--HP-YWSQVEQGVKAAGKALGVDTKFFVPQKEDINAQLQMLESFIAEGVNGIAIAPS 66 (313)
T ss_dssp CEEEEECSCS--SH-HHHHHHHHHHHHHHHHTCEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred eEEEEEeCCC--cH-HHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 5788886432 23 544555555667778899888764 2233222 12111 47999999865
No 137
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=54.15 E-value=57 Score=29.71 Aligned_cols=61 Identities=11% Similarity=0.164 Sum_probs=37.4
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhh---hhhhc--CCCCEEEECCC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM---LLDSF--EPIHGVLLCEG 72 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~---l~~~l--~~~DGlll~GG 72 (369)
..+||++... ..+.+...+-...-+.+.+.|..+++.....+.+. +.+.+ ..+||||+.+.
T Consensus 63 ~~~Ig~i~~~--~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 128 (332)
T 2o20_A 63 TTTVGVILPT--ITSTYFAAITRGVDDIASMYKYNMILANSDNDVEKEEKVLETFLSKQVDGIVYMGS 128 (332)
T ss_dssp CCEEEEEESC--TTCHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECSS
T ss_pred CCEEEEEeCC--CCCcHHHHHHHHHHHHHHHcCCEEEEEECCCChHHHHHHHHHHHhCCCCEEEEeCC
Confidence 3578887643 22444444555556677889999888765444321 11111 47999999875
No 138
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=53.81 E-value=25 Score=31.44 Aligned_cols=59 Identities=5% Similarity=0.020 Sum_probs=38.0
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhhc-CCCCEEEECCC
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~----l~~~l-~~~DGlll~GG 72 (369)
.+||++... ..+.+...+....-+.+.+.|..++++... +.+. +.... ..+||||+.+.
T Consensus 3 ~~Ig~i~~~--~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~i~~l~~~~vdgiii~~~ 66 (306)
T 8abp_A 3 LKLGFLVKQ--PEEPWFQTEWKFADKAGKDLGFEVIKIAVP-DGEKTLNAIDSLAASGAKGFVICTP 66 (306)
T ss_dssp EEEEEEESC--TTSHHHHHHHHHHHHHHHHHTEEEEEEECC-SHHHHHHHHHHHHHTTCCEEEEECS
T ss_pred eEEEEEeCC--CCchHHHHHHHHHHHHHHHcCCEEEEeCCC-CHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 578888653 234566666666677888889988877653 4322 11111 37999999865
No 139
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=53.34 E-value=28 Score=32.73 Aligned_cols=63 Identities=11% Similarity=0.027 Sum_probs=35.7
Q ss_pred CCCCCCcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCCh--hhh-hhh-cCCCCEEEECCC
Q 017539 5 DLSVILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGV--HML-LDS-FEPIHGVLLCEG 72 (369)
Q Consensus 5 ~~~~~~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~--~~l-~~~-l~~~DGlll~GG 72 (369)
.|+. +.+++|+.++...+++ .....++++.++|..+.+....... ..+ .+. .+.+|.||..||
T Consensus 25 ~m~~-~~~~~vi~Np~sg~~~----~~~~i~~~l~~~g~~~~~~~t~~~~~~~~~~~~~~~~~~d~vvv~GG 91 (332)
T 2bon_A 25 GMAE-FPASLLILNGKSTDNL----PLREAIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGGG 91 (332)
T ss_dssp ------CCEEEEECSSSTTCH----HHHHHHHHHHTTTCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEEES
T ss_pred hhhh-cceEEEEECCCCCCCc----hHHHHHHHHHHcCCcEEEEEecCcchHHHHHHHHHhcCCCEEEEEcc
Confidence 3544 3568888887654331 2245677888899888776543221 111 111 136899999999
No 140
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=52.77 E-value=26 Score=30.76 Aligned_cols=60 Identities=10% Similarity=-0.045 Sum_probs=37.1
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhhc-CCCCEEEECCC
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~----l~~~l-~~~DGlll~GG 72 (369)
.+||++.... .+.+...+....-+.+.+.|..+++.....+.+. +.... ..+||||+.+.
T Consensus 4 ~~Ig~i~~~~--~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~ 68 (275)
T 3d8u_A 4 YSIALIIPSL--FEKACAHFLPSFQQALNKAGYQLLLGYSDYSIEQEEKLLSTFLESRPAGVVLFGS 68 (275)
T ss_dssp CEEEEEESCS--SCHHHHHHHHHHHHHHHHTSCEECCEECTTCHHHHHHHHHHHHTSCCCCEEEESS
T ss_pred eEEEEEeCCC--ccccHHHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 4788876432 2445555555566778889998887765444322 22211 47999999865
No 141
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=52.18 E-value=32 Score=30.54 Aligned_cols=61 Identities=7% Similarity=-0.095 Sum_probs=39.0
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCC--Chhhhhhh----c-CCCCEEEECCC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS--GVHMLLDS----F-EPIHGVLLCEG 72 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~--~~~~l~~~----l-~~~DGlll~GG 72 (369)
..+||++.... .+.+...+....-+.+.+.|..+++..... +.+...+. . ..+||||+.+.
T Consensus 5 ~~~Igvi~~~~--~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~ 72 (304)
T 3o1i_D 5 DEKICAIYPHL--KDSYWLSVNYGMVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTV 72 (304)
T ss_dssp CCEEEEEESCS--CSHHHHHHHHHHHHHHHHHTCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCS
T ss_pred CcEEEEEeCCC--CCcHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 35788886532 345555556666777888899998887654 42221111 1 27999999965
No 142
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=51.82 E-value=9.8 Score=36.96 Aligned_cols=34 Identities=6% Similarity=-0.078 Sum_probs=21.8
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEE
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAI 47 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vi 47 (369)
..|||+..... .-........++||.+.|..+++
T Consensus 39 k~I~iv~K~~~---~~~~~~~~~l~~~L~~~~~~V~v 72 (365)
T 3pfn_A 39 KSVLVIKKMRD---ASLLQPFKELCTHLMEENMIVYV 72 (365)
T ss_dssp CEEEEEECTTC---GGGHHHHHHHHHHHHHTSCEEEE
T ss_pred CEEEEEecCCC---HHHHHHHHHHHHHHHHCCCEEEE
Confidence 36889887532 11233445578899999977665
No 143
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=51.49 E-value=24 Score=33.68 Aligned_cols=60 Identities=10% Similarity=-0.136 Sum_probs=35.7
Q ss_pred CCCCcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhc-CCCCEEEE
Q 017539 7 SVILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSF-EPIHGVLL 69 (369)
Q Consensus 7 ~~~~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l-~~~DGlll 69 (369)
+....+|||+.. ..+.+...+-...-+.+.+.|..+++.......+.+.... ..+||||+
T Consensus 22 ~~~s~~Igvv~~---~~~~f~~~l~~gi~~~a~~~g~~~~i~~~~~~~~~i~~l~~~~vDGiIi 82 (412)
T 4fe7_A 22 FTKRHRITLLFN---ANKAYDRQVVEGVGEYLQASQSEWDIFIEEDFRARIDKIKDWLGDGVIA 82 (412)
T ss_dssp CCCCEEEEEECC---TTSHHHHHHHHHHHHHHHHHTCCEEEEECC-CC--------CCCSEEEE
T ss_pred CCCCceEEEEeC---CcchhhHHHHHHHHHHHHhcCCCeEEEecCCccchhhhHhcCCCCEEEE
Confidence 334578999883 3455555566666677888898888776443322222222 26999999
No 144
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=47.92 E-value=91 Score=28.25 Aligned_cols=61 Identities=3% Similarity=-0.057 Sum_probs=35.1
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEE--cCC--CChh----hhhhhc-CCCCEEEECC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIV--PRV--SGVH----MLLDSF-EPIHGVLLCE 71 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~viv--p~~--~~~~----~l~~~l-~~~DGlll~G 71 (369)
..+||++.... ..+.+...+-....+.+.+.|..++++ ... .+.+ .+.... ..+||||+++
T Consensus 43 ~~~Igvi~~~~-~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~ 112 (342)
T 1jx6_A 43 PIKISVVYPGQ-QVSDYWVRNIASFEKRLYKLNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFTL 112 (342)
T ss_dssp CEEEEEEECCC-SSCCHHHHHHHHHHHHHHHTTCCEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEECC
T ss_pred ceEEEEEecCC-cccHHHHHHHHHHHHHHHHcCCeEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 46788886431 124555555556667788899877665 232 2322 122211 3799999953
No 145
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=46.10 E-value=32 Score=30.62 Aligned_cols=61 Identities=18% Similarity=0.163 Sum_probs=35.0
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEE-cCCCChh----hhhhhc-CCCCEEEECCC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIV-PRVSGVH----MLLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~viv-p~~~~~~----~l~~~l-~~~DGlll~GG 72 (369)
..+||++... ..+.+...+-....+.+.+.|..+++. ....+.+ .+.... ..+||||+.+.
T Consensus 8 ~~~Ig~i~~~--~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 74 (290)
T 3clk_A 8 SNVIAAVVSS--VRTNFAQQILDGIQEEAHKNGYNLIIVYSGSADPEEQKHALLTAIERPVMGILLLSI 74 (290)
T ss_dssp CCEEEEECCC--CSSSHHHHHHHHHHHHHHTTTCEEEEEC----------CHHHHHHSSCCSEEEEESC
T ss_pred CCEEEEEeCC--CCChHHHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecc
Confidence 3578888643 224455555555667788899988877 4322221 122222 47999999765
No 146
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=45.96 E-value=47 Score=30.66 Aligned_cols=60 Identities=8% Similarity=0.070 Sum_probs=36.3
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhh---hhhhc--CCCCEEEECCC
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM---LLDSF--EPIHGVLLCEG 72 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~---l~~~l--~~~DGlll~GG 72 (369)
.+||++... ..+.+...+-...-+.+.+.|..+++.....+.+. +.+.+ ..+||||+.+.
T Consensus 67 ~~Igvi~~~--~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 131 (348)
T 3bil_A 67 NTIGVIVPS--LINHYFAAMVTEIQSTASKAGLATIITNSNEDATTMSGSLEFLTSHGVDGIICVPN 131 (348)
T ss_dssp -CEEEEESC--SSSHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSCEEECCC
T ss_pred CEEEEEeCC--CCCcHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 467877543 12445555555566677889999888765444322 11112 37999999865
No 147
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=45.91 E-value=1.1e+02 Score=28.08 Aligned_cols=89 Identities=11% Similarity=0.017 Sum_probs=51.9
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCC-CEEEEEcCC---CChhhhhhhcCCCCEEEECCCCCCCCCCccccCC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYG-AVPAIVPRV---SGVHMLLDSFEPIHGVLLCEGEDIDPSLYEAETS 85 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~G-a~~vivp~~---~~~~~l~~~l~~~DGlll~GG~didp~~y~~~~~ 85 (369)
+.+|+|++.... +. .........+.+++.| ..+.+.... .+.+.+.+.|+.+|.||+.-..+.
T Consensus 4 ~~kvLiv~G~~~--H~-~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~~~L~~~D~vV~~~~~~~---------- 70 (281)
T 4e5v_A 4 PIKTLLITGQNN--HN-WQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFVLDFSPYQLVVLDYNGDS---------- 70 (281)
T ss_dssp CEEEEEEESCCS--SC-HHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCCCCCTTCSEEEECCCSSC----------
T ss_pred ceEEEEEcCCCC--CC-hHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHHhhhhhcCCEEEEeCCCCc----------
Confidence 457888866542 22 3444556777888888 555554321 011222345788999998542210
Q ss_pred CCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHH
Q 017539 86 NLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGS 134 (369)
Q Consensus 86 ~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~ 134 (369)
++++ ..+.+...++.|.+++|+.-+.
T Consensus 71 -l~~~----------------------~~~~l~~yV~~Ggglv~~H~a~ 96 (281)
T 4e5v_A 71 -WPEE----------------------TNRRFLEYVQNGGGVVIYHAAD 96 (281)
T ss_dssp -CCHH----------------------HHHHHHHHHHTTCEEEEEGGGG
T ss_pred -CCHH----------------------HHHHHHHHHHcCCCEEEEeccc
Confidence 1111 1345566677899999998654
No 148
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=45.76 E-value=30 Score=32.01 Aligned_cols=56 Identities=20% Similarity=0.227 Sum_probs=35.8
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCC--------------------------ChhhhhhhcC-
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS--------------------------GVHMLLDSFE- 62 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~--------------------------~~~~l~~~l~- 62 (369)
+.+|+|+.-. .+++...++.+.+.|..++.+-+.. +.+.+...++
T Consensus 10 ~~~IlVtGat--------G~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~ 81 (346)
T 3i6i_A 10 KGRVLIAGAT--------GFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKE 81 (346)
T ss_dssp -CCEEEECTT--------SHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHH
T ss_pred CCeEEEECCC--------cHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhh
Confidence 3578887654 3566666777777776665554322 3455666677
Q ss_pred -CCCEEEECCCC
Q 017539 63 -PIHGVLLCEGE 73 (369)
Q Consensus 63 -~~DGlll~GG~ 73 (369)
.+|.||-+.|.
T Consensus 82 ~~~d~Vi~~a~~ 93 (346)
T 3i6i_A 82 HEIDIVVSTVGG 93 (346)
T ss_dssp TTCCEEEECCCG
T ss_pred CCCCEEEECCch
Confidence 88988888773
No 149
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=44.80 E-value=37 Score=30.27 Aligned_cols=60 Identities=10% Similarity=-0.052 Sum_probs=39.0
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCCh---hhhhhhc-CCCCEEEECCC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGV---HMLLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~---~~l~~~l-~~~DGlll~GG 72 (369)
..+||++. . ..+.+...+-...-+.+.+.|..+++.....+. +.+.... ..+||||+.+.
T Consensus 12 ~~~Igvi~-~--~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 75 (289)
T 3k9c_A 12 SRLLGVVF-E--LQQPFHGDLVEQIYAAATRRGYDVMLSAVAPSRAEKVAVQALMRERCEAAILLGT 75 (289)
T ss_dssp -CEEEEEE-E--TTCHHHHHHHHHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHHTTTTEEEEEEETC
T ss_pred CCEEEEEE-e--cCCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHhCCCCEEEEECC
Confidence 46788888 3 345566666666777888999999887654332 1222222 37999999875
No 150
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=44.49 E-value=52 Score=30.18 Aligned_cols=17 Identities=24% Similarity=0.266 Sum_probs=15.3
Q ss_pred HHHHHHHHcCCCEEEEe
Q 017539 115 RLAKLCLERNIPYLGIC 131 (369)
Q Consensus 115 ~li~~~~e~~iPiLGIC 131 (369)
..++.|...++|+.|+|
T Consensus 131 ~ai~EA~~l~IP~Ial~ 147 (252)
T 3u5c_A 131 QAIKEASYVNIPVIALT 147 (252)
T ss_dssp HHHHHHHTTTCCEEEEE
T ss_pred HHHHHHHHcCCCEEEEE
Confidence 57888888999999999
No 151
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=44.22 E-value=67 Score=28.46 Aligned_cols=59 Identities=14% Similarity=0.035 Sum_probs=35.8
Q ss_pred EEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEc--CCCChhh----hhhhc-CCCCEEEECCC
Q 017539 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVP--RVSGVHM----LLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 12 ~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp--~~~~~~~----l~~~l-~~~DGlll~GG 72 (369)
+||++... ..+.+...+....-+.+.+.|..+++.. ...+.+. +.... ..+||||+.+.
T Consensus 3 ~Igvi~~~--~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~ 68 (288)
T 1gud_A 3 EYAVVLKT--LSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPL 68 (288)
T ss_dssp EEEEEESC--SSSHHHHHHHHHHHHHHHHHTCCEEEEECSSTTCHHHHHHHHHHHHTSSEEEEEECCS
T ss_pred EEEEEeCC--CCchHHHHHHHHHHHHHHHcCCEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 67777533 2345555555666677888898888765 3333222 22222 36999999865
No 152
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=44.13 E-value=23 Score=31.40 Aligned_cols=62 Identities=5% Similarity=-0.067 Sum_probs=37.3
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCC---hhhhhhhc--CCCCEEEECCC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSG---VHMLLDSF--EPIHGVLLCEG 72 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~---~~~l~~~l--~~~DGlll~GG 72 (369)
..+|||+.... ..+.+...+-...-+.+.+.|..+++.....+ ...+.+.+ ..+||||+.+.
T Consensus 11 ~~~Igvi~~~~-~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 77 (289)
T 3g85_A 11 KPTIALYWSSD-ISVNIISRFLRGLQSKLAKQNYNYNVVICPYKTDCLHLEKGISKENSFDAAIIANI 77 (289)
T ss_dssp CCEEEEEEETT-SCGGGHHHHHHHHHHHHHHTTTCSEEEEEEECTTCGGGCGGGSTTTCCSEEEESSC
T ss_pred CceEEEEeccc-cchHHHHHHHHHHHHHHHHcCCeEEEEecCCCchhHHHHHHHHhccCCCEEEEecC
Confidence 46788886521 23455555556666778889988876643222 12222222 26999999865
No 153
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=43.66 E-value=22 Score=32.53 Aligned_cols=43 Identities=16% Similarity=0.058 Sum_probs=27.6
Q ss_pred EEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCC
Q 017539 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEG 72 (369)
Q Consensus 12 ~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG 72 (369)
+|+|+.++.. + ..-+.+...+++++.|..+. .+.+|-||.-||
T Consensus 2 ki~ii~n~~~---~-~~~~~~~l~~~l~~~g~~v~--------------~~~~D~vv~lGG 44 (272)
T 2i2c_A 2 KYMITSKGDE---K-SDLLRLNMIAGFGEYDMEYD--------------DVEPEIVISIGG 44 (272)
T ss_dssp EEEEEECCSH---H-HHHHHHHHHHHHTTSSCEEC--------------SSSCSEEEEEES
T ss_pred EEEEEECCCH---H-HHHHHHHHHHHHHHCCCEeC--------------CCCCCEEEEEcC
Confidence 5788877421 1 12234456677888888651 136899999999
No 154
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=43.44 E-value=69 Score=29.01 Aligned_cols=60 Identities=10% Similarity=0.097 Sum_probs=36.3
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEE-cCCCChh----hhhhhc-CCCCEEEECCC
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIV-PRVSGVH----MLLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~viv-p~~~~~~----~l~~~l-~~~DGlll~GG 72 (369)
.+||++.... .+.+...+....-+.+.+.|..+++. +...+.+ .+...+ ..+||||+.+.
T Consensus 4 ~~Igvi~~~~--~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~ 69 (316)
T 1tjy_A 4 ERIAFIPKLV--GVGFFTSGGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAV 69 (316)
T ss_dssp CEEEEECSSS--SSHHHHHHHHHHHHHHHHHTCEEEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CEEEEEeCCC--CChHHHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4788886432 24455555556666778889888875 3333332 122222 47999999864
No 155
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=43.26 E-value=36 Score=30.83 Aligned_cols=61 Identities=20% Similarity=0.200 Sum_probs=38.8
Q ss_pred CCcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCC-C-----------hhhhhhhcCCCCEEEEC
Q 017539 9 ILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS-G-----------VHMLLDSFEPIHGVLLC 70 (369)
Q Consensus 9 ~~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~-~-----------~~~l~~~l~~~DGlll~ 70 (369)
.+++|+|+..- .+++.....+.+..++.+.+.|+.+.++.... . ...+.+.+...|||||.
T Consensus 33 ~~mkIliI~GS-~r~~s~t~~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~~ 105 (247)
T 2q62_A 33 HRPRILILYGS-LRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWV 105 (247)
T ss_dssp SCCEEEEEECC-CCSSCHHHHHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEEE
T ss_pred CCCeEEEEEcc-CCCCCHHHHHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEEE
Confidence 34567666432 22345556677777888888899888765322 1 23445566679999996
No 156
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=42.42 E-value=47 Score=30.49 Aligned_cols=17 Identities=18% Similarity=0.372 Sum_probs=15.6
Q ss_pred HHHHHHHHcCCCEEEEe
Q 017539 115 RLAKLCLERNIPYLGIC 131 (369)
Q Consensus 115 ~li~~~~e~~iPiLGIC 131 (369)
.++++|...+||+.|+|
T Consensus 165 ~AI~EA~~lgIPvIalv 181 (253)
T 3bch_A 165 QPLTEASYVNLPTIALC 181 (253)
T ss_dssp HHHHHHHHTTCCEEEEE
T ss_pred hHHHHHHHhCCCEEEEE
Confidence 57889999999999999
No 157
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=41.47 E-value=62 Score=29.83 Aligned_cols=62 Identities=6% Similarity=0.023 Sum_probs=38.5
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCCh--hh-hhhhcCCCCEEEECCC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGV--HM-LLDSFEPIHGVLLCEG 72 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~--~~-l~~~l~~~DGlll~GG 72 (369)
+.+++|+-++..-++.....+ ....+++.++|..+.+....... .. ..+..+.+|.|+..||
T Consensus 8 m~~~~vi~Np~sG~~~~~~~~-~~i~~~l~~~~~~~~~~~t~~~~~a~~~~~~~~~~~d~vv~~GG 72 (304)
T 3s40_A 8 FEKVLLIVNPKAGQGDLHTNL-TKIVPPLAAAFPDLHILHTKEQGDATKYCQEFASKVDLIIVFGG 72 (304)
T ss_dssp CSSEEEEECTTCSSSCHHHHH-HHHHHHHHHHCSEEEEEECCSTTHHHHHHHHHTTTCSEEEEEEC
T ss_pred CCEEEEEECcccCCCchHHHH-HHHHHHHHHcCCeEEEEEccCcchHHHHHHHhhcCCCEEEEEcc
Confidence 457788888765444332332 44567888889888776543321 12 2233347899999999
No 158
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=41.10 E-value=21 Score=32.86 Aligned_cols=57 Identities=18% Similarity=0.251 Sum_probs=34.4
Q ss_pred CCCcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECC
Q 017539 8 VILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCE 71 (369)
Q Consensus 8 ~~~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~G 71 (369)
+-+++|+||.... .......+.++++..|..+..++...-+.. .+.|+.+|.||++.
T Consensus 2 ~~m~~vLiV~g~~------~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~-~~~L~~yDvIIl~d 58 (259)
T 3rht_A 2 NAMTRVLYCGDTS------LETAAGYLAGLMTSWQWEFDYIPSHVGLDV-GELLAKQDLVILSD 58 (259)
T ss_dssp ----CEEEEESSC------TTTTHHHHHHHHHHTTCCCEEECTTSCBCS-SHHHHTCSEEEEES
T ss_pred CCCceEEEECCCC------chhHHHHHHHHHHhCCceEEEecccccccC-hhHHhcCCEEEEcC
Confidence 4468899995322 122334566789999999988875433221 23456899999973
No 159
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=41.00 E-value=72 Score=28.00 Aligned_cols=61 Identities=10% Similarity=0.017 Sum_probs=36.7
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhhc-CCCCEEEECCC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~----l~~~l-~~~DGlll~GG 72 (369)
..+||++.... .+.+...+.....+.+.+.|..+++.....+.+. +.... ..+||||+.+.
T Consensus 7 ~~~Ig~i~~~~--~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~ 72 (289)
T 1dbq_A 7 TKSIGLLATSS--EAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCS 72 (289)
T ss_dssp -CEEEEEESCT--TSHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred CCEEEEEeCCC--CChHHHHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHhCCCCEEEEEec
Confidence 35788886432 2444444555556677788998887765444332 12111 37999999765
No 160
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=40.23 E-value=53 Score=29.87 Aligned_cols=61 Identities=15% Similarity=0.172 Sum_probs=36.7
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhh---hhhhc--CCCCEEEECCC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM---LLDSF--EPIHGVLLCEG 72 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~---l~~~l--~~~DGlll~GG 72 (369)
..+||++... ..+.+...+-...-+.+.+.|..+++.....+.+. +.+.+ ..+||||+.+.
T Consensus 60 ~~~Ig~i~~~--~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 125 (332)
T 2hsg_A 60 TTTVGVIIPD--ISNIFYAELARGIEDIATMYKYNIILSNSDQNQDKELHLLNNMLGKQVDGIIFMSG 125 (332)
T ss_dssp CCEEEEEEC----CCSHHHHHHHHHHHHHHHHTCEEEEEECCSHHHHHHHHHHHTSCCSSCCEEECCS
T ss_pred CCEEEEEeCC--CCCcHHHHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecC
Confidence 3578888643 12445455555556677788999888765433221 12222 37999999875
No 161
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}
Probab=40.22 E-value=39 Score=29.39 Aligned_cols=59 Identities=10% Similarity=0.042 Sum_probs=38.1
Q ss_pred CCCCCcEEEEecCcccCcCcccccchhHHHHHHHHCC-CEEEEEcCC-------------------CChhhhhhhcCCCC
Q 017539 6 LSVILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYG-AVPAIVPRV-------------------SGVHMLLDSFEPIH 65 (369)
Q Consensus 6 ~~~~~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~G-a~~vivp~~-------------------~~~~~l~~~l~~~D 65 (369)
+.+.+++|+|+.-. .+++...++.+.+.| +.++.+-+. .+.+.+...++.+|
T Consensus 19 ~~~~mk~vlVtGat--------G~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D 90 (236)
T 3qvo_A 19 FQGHMKNVLILGAG--------GQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQD 90 (236)
T ss_dssp ---CCEEEEEETTT--------SHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCS
T ss_pred ecCcccEEEEEeCC--------cHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhcCCC
Confidence 33445678887544 467888888888888 666655432 23455666777888
Q ss_pred EEEECCC
Q 017539 66 GVLLCEG 72 (369)
Q Consensus 66 Glll~GG 72 (369)
.||.+.|
T Consensus 91 ~vv~~a~ 97 (236)
T 3qvo_A 91 IVYANLT 97 (236)
T ss_dssp EEEEECC
T ss_pred EEEEcCC
Confidence 8887655
No 162
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=39.40 E-value=1.7e+02 Score=24.56 Aligned_cols=46 Identities=11% Similarity=0.044 Sum_probs=33.5
Q ss_pred ccchhHHHHHHHHCCCEEEEEcCC-----------------CC-hhhhhhhcCCCCEEEECCCC
Q 017539 28 DFVGEYHLDLIVGYGAVPAIVPRV-----------------SG-VHMLLDSFEPIHGVLLCEGE 73 (369)
Q Consensus 28 ~~v~~~~l~~l~~~Ga~~vivp~~-----------------~~-~~~l~~~l~~~DGlll~GG~ 73 (369)
.+++...++.+.+.|..++.+-+. .+ .+.+.+.++.+|.||-+.|.
T Consensus 10 G~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~ 73 (219)
T 3dqp_A 10 GRVGKSLLKSLSTTDYQIYAGARKVEQVPQYNNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGS 73 (219)
T ss_dssp SHHHHHHHHHHTTSSCEEEEEESSGGGSCCCTTEEEEECCTTSCHHHHHTTTTTCSEEEECCCC
T ss_pred CHHHHHHHHHHHHCCCEEEEEECCccchhhcCCceEEEecccCCHHHHHHHHcCCCEEEECCcC
Confidence 467777777787778777665432 23 56677788899999999875
No 163
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=38.59 E-value=77 Score=28.98 Aligned_cols=59 Identities=12% Similarity=0.045 Sum_probs=35.2
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCC-hhhhhhhcCCCCEEEEC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSG-VHMLLDSFEPIHGVLLC 70 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~-~~~l~~~l~~~DGlll~ 70 (369)
+.+|+|++.-.+...+..-.-+...++++.+.|..++.+..... ...+.. ..+|.++..
T Consensus 13 ~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~~g~~v~~i~~~~~~~~~l~~--~~~D~v~~~ 72 (317)
T 4eg0_A 13 FGKVAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERPLSALKD--EGFVRAFNA 72 (317)
T ss_dssp GCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCTTHHHH--TTCCEEEEC
T ss_pred cceEEEEECCCCCcceeeHHHHHHHHHHHHHCCCEEEEEeCCCchHHHhhh--cCCCEEEEc
Confidence 46899987543221221112345678899999999999874322 222221 368988875
No 164
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=38.57 E-value=57 Score=30.66 Aligned_cols=17 Identities=18% Similarity=0.372 Sum_probs=15.6
Q ss_pred HHHHHHHHcCCCEEEEe
Q 017539 115 RLAKLCLERNIPYLGIC 131 (369)
Q Consensus 115 ~li~~~~e~~iPiLGIC 131 (369)
..++.|...+||+.|+|
T Consensus 132 ~AI~EA~~lgIPvIalv 148 (295)
T 2zkq_b 132 QPLTEASYVNLPTIALC 148 (295)
T ss_dssp HHHHHHHHHTCCEEEEE
T ss_pred hHHHHHHHhCCCEEEEe
Confidence 57889999999999999
No 165
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=38.28 E-value=1.1e+02 Score=26.82 Aligned_cols=60 Identities=10% Similarity=0.118 Sum_probs=35.7
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEc-CCCChhh----hhhhc-CCCCEEEECCC
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVP-RVSGVHM----LLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp-~~~~~~~----l~~~l-~~~DGlll~GG 72 (369)
.+||++.... .+.+...+....-+.+.+.|..++++. ...+.+. +.... ..+||||+.+.
T Consensus 5 ~~Ig~i~~~~--~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 70 (303)
T 3d02_A 5 KTVVNISKVD--GMPWFNRMGEGVVQAGKEFNLNASQVGPSSTDAPQQVKIIEDLIARKVDAITIVPN 70 (303)
T ss_dssp EEEEEECSCS--SCHHHHHHHHHHHHHHHHTTEEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred eEEEEEeccC--CChHHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 5788886432 234555555556667888998887543 3333322 22211 47999999865
No 166
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=36.74 E-value=11 Score=36.87 Aligned_cols=35 Identities=9% Similarity=-0.083 Sum_probs=20.8
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHC--CCEEEE
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGY--GAVPAI 47 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~--Ga~~vi 47 (369)
+..|+|+.+... .-........+++|.+. |..+++
T Consensus 41 ~k~V~II~n~~~---~~~~~~~~~l~~~L~~~~~gi~V~v 77 (388)
T 3afo_A 41 LQNVYITKKPWT---PSTREAMVEFITHLHESYPEVNVIV 77 (388)
T ss_dssp CCEEEEEECTTC---HHHHHHHHHHHHHHHHHCTTCEEEC
T ss_pred CcEEEEEEeCCC---HHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 356899987642 11223344567788877 766654
No 167
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=35.72 E-value=61 Score=28.86 Aligned_cols=62 Identities=15% Similarity=0.014 Sum_probs=39.8
Q ss_pred CCcEEEEecCcccCcCcccc-cchhHHHHHHHHCCCEEEEEcCCCChhhhhh---hc--CCCCEEEECCC
Q 017539 9 ILPRVLIVSRRSVRKNKFVD-FVGEYHLDLIVGYGAVPAIVPRVSGVHMLLD---SF--EPIHGVLLCEG 72 (369)
Q Consensus 9 ~~P~IgIv~~~~~~~~~~~~-~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~---~l--~~~DGlll~GG 72 (369)
...+||++.... .+.+.. .+-...-+.+.+.|..+++.....+.+...+ .+ ..+||||+.+.
T Consensus 12 ~s~~Igvi~~~~--~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~ 79 (301)
T 3miz_A 12 RSNTFGIITDYV--STTPYSVDIVRGIQDWANANGKTILIANTGGSSEREVEIWKMFQSHRIDGVLYVTM 79 (301)
T ss_dssp CCCEEEEEESST--TTCCSCHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred CCCEEEEEeCCC--cCcccHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEecC
Confidence 346788886442 234444 5556667788899999998876544332111 11 37999999864
No 168
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=35.07 E-value=69 Score=30.17 Aligned_cols=17 Identities=29% Similarity=0.456 Sum_probs=15.3
Q ss_pred HHHHHHHHcCCCEEEEe
Q 017539 115 RLAKLCLERNIPYLGIC 131 (369)
Q Consensus 115 ~li~~~~e~~iPiLGIC 131 (369)
..+++|...+||+.|+|
T Consensus 136 qAI~EA~~lnIPtIALv 152 (305)
T 3iz6_A 136 QPIKESALGNIPTIAFC 152 (305)
T ss_dssp HHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHcCCCEEEEE
Confidence 57888888999999999
No 169
>1ehs_A STB, heat-stable enterotoxin B; disulfide; NMR {Escherichia coli} SCOP: g.2.1.1
Probab=34.81 E-value=5.5 Score=26.09 Aligned_cols=17 Identities=35% Similarity=0.585 Sum_probs=13.2
Q ss_pred CEEEEeHHHHHHHHHhC
Q 017539 126 PYLGICRGSQVLNVACG 142 (369)
Q Consensus 126 PiLGIClG~QlL~~a~G 142 (369)
-.-|.|.|.|+|..+-|
T Consensus 31 gtagacfgaqimvaakg 47 (48)
T 1ehs_A 31 GTAGACFGAQIMVAAKG 47 (48)
T ss_dssp SSCCTTTTTHHHHTTTT
T ss_pred CccccccchhHhhhccc
Confidence 35688999999986654
No 170
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=34.43 E-value=75 Score=28.75 Aligned_cols=104 Identities=12% Similarity=0.074 Sum_probs=55.5
Q ss_pred CcEEEEecCcc-cCcCc-----ccccchhHHHHHHHHCCCEEEEEcCCCChhhh-hhhcCCCCEEEECCCCCCCCCCccc
Q 017539 10 LPRVLIVSRRS-VRKNK-----FVDFVGEYHLDLIVGYGAVPAIVPRVSGVHML-LDSFEPIHGVLLCEGEDIDPSLYEA 82 (369)
Q Consensus 10 ~P~IgIv~~~~-~~~~~-----~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l-~~~l~~~DGlll~GG~didp~~y~~ 82 (369)
.++|+|.+... ...+. +-+-+.....+.|...|..+..+..+.....+ .+.|+.+|.||+-|...-+.
T Consensus 7 ~~~vlv~~~~~h~~~~~~v~~~~p~g~~~~i~~~L~~~gf~V~~~t~dd~~~~~~~~~L~~~DvvV~~~~~~~~~----- 81 (252)
T 1t0b_A 7 PIRVVVWNEFRHEKKDEQVRAIYPEGMHTVIASYLAEAGFDAATAVLDEPEHGLTDEVLDRCDVLVWWGHIAHDE----- 81 (252)
T ss_dssp CCEEEEEECCCHHHHCHHHHHHCTTCHHHHHHHHHHHTTCEEEEEESSSGGGGCCHHHHHTCSEEEEECSSCGGG-----
T ss_pred CcEEEEECCccccccchhhhccCchHHHHHHHHHHhhCCcEEEEEeccCccccCCHhHHhcCCEEEEecCCCCCc-----
Confidence 47999987431 11111 11223344577888899888775422211111 24567899999842110000
Q ss_pred cCCCCChhHHHHHHhhcCCCCccCchhhHHHHHHHHHHHHcCCCEEEEeHHH--HHHHHHhCCe
Q 017539 83 ETSNLSPEELEEIRRLHTSDTAIDKEKDSIELRLAKLCLERNIPYLGICRGS--QVLNVACGGT 144 (369)
Q Consensus 83 ~~~~~~~~~~~~i~~~~~~~~~~~~~rd~~e~~li~~~~e~~iPiLGIClG~--QlL~~a~GG~ 144 (369)
+++++ .+.++..+++|.+++||=-|. +-....+|+.
T Consensus 82 ----l~~~~----------------------~~al~~~V~~GgG~vgiH~a~~~~~y~~llGg~ 119 (252)
T 1t0b_A 82 ----VKDEV----------------------VERVHRRVLEGMGLIVLHSGHFSKIFKKLMGTT 119 (252)
T ss_dssp ----SCHHH----------------------HHHHHHHHHTTCEEEEEGGGGGSHHHHHHHCSC
T ss_pred ----CCHHH----------------------HHHHHHHHHcCCCEEEEcccCCcHHHHhhhCCc
Confidence 11121 345667778899999995552 3333445554
No 171
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=33.97 E-value=31 Score=30.74 Aligned_cols=61 Identities=11% Similarity=0.136 Sum_probs=40.5
Q ss_pred CcEEEEec-Cccc--CcCcccccchhHHHHHHHHCCCEEEEEcCC--CChhhhhhhcCCCCEEEEC
Q 017539 10 LPRVLIVS-RRSV--RKNKFVDFVGEYHLDLIVGYGAVPAIVPRV--SGVHMLLDSFEPIHGVLLC 70 (369)
Q Consensus 10 ~P~IgIv~-~~~~--~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~--~~~~~l~~~l~~~DGlll~ 70 (369)
|.+|+||. .+.. +++.+...+.+...+.+...|..+.++... .+.+...+.+...|+||+.
T Consensus 25 M~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g~ev~~~dL~~~~Dv~~~~~~l~~aD~iv~~ 90 (218)
T 3rpe_A 25 MSNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGHQVKITTVDQGYDIESEIENYLWADTIIYQ 90 (218)
T ss_dssp CCCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTTCCEEEEEGGGCCCHHHHHHHHHHCSEEEEE
T ss_pred CcceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCCCEEEEEECCCccCHHHHHHHHHhCCEEEEE
Confidence 44566664 3321 234556667777888888899888776543 3445556667789999996
No 172
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Probab=33.64 E-value=1.3e+02 Score=28.06 Aligned_cols=62 Identities=10% Similarity=-0.017 Sum_probs=43.5
Q ss_pred CCCCCCCcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCC-------------------ChhhhhhhcCCC
Q 017539 4 HDLSVILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS-------------------GVHMLLDSFEPI 64 (369)
Q Consensus 4 ~~~~~~~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~-------------------~~~~l~~~l~~~ 64 (369)
+.|...+.+|+|+... .+++...++.|.+.|..++.+-+.. +.+.+.+.++.+
T Consensus 23 ~~~~~~~~~vlVtGat--------G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 94 (379)
T 2c5a_A 23 QYWPSENLKISITGAG--------GFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGV 94 (379)
T ss_dssp CSCTTSCCEEEEETTT--------SHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTC
T ss_pred ccccccCCeEEEECCc--------cHHHHHHHHHHHHCCCeEEEEECCCccchhhccCCceEEECCCCCHHHHHHHhCCC
Confidence 3344455678887654 5788899999999998887664321 234455667789
Q ss_pred CEEEECCCC
Q 017539 65 HGVLLCEGE 73 (369)
Q Consensus 65 DGlll~GG~ 73 (369)
|.||-+.|.
T Consensus 95 d~Vih~A~~ 103 (379)
T 2c5a_A 95 DHVFNLAAD 103 (379)
T ss_dssp SEEEECCCC
T ss_pred CEEEECcee
Confidence 999998774
No 173
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2
Probab=33.31 E-value=2.3e+02 Score=24.99 Aligned_cols=21 Identities=14% Similarity=0.222 Sum_probs=15.3
Q ss_pred ChhhhhhhcCCCCEEEECCCC
Q 017539 53 GVHMLLDSFEPIHGVLLCEGE 73 (369)
Q Consensus 53 ~~~~l~~~l~~~DGlll~GG~ 73 (369)
+.+.+...++.+|.||.+.|.
T Consensus 66 d~~~l~~~~~~~d~vi~~a~~ 86 (313)
T 1qyd_A 66 DHQRLVDALKQVDVVISALAG 86 (313)
T ss_dssp CHHHHHHHHTTCSEEEECCCC
T ss_pred CHHHHHHHHhCCCEEEECCcc
Confidence 345666777889999988764
No 174
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}
Probab=33.09 E-value=1.6e+02 Score=27.00 Aligned_cols=65 Identities=14% Similarity=-0.029 Sum_probs=44.3
Q ss_pred CCCCCCCCCCcEEEEecCcccCcCcccccchhHHHHHHHH--CCCEEEEEcCCC--------------------------
Q 017539 1 MAAHDLSVILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVG--YGAVPAIVPRVS-------------------------- 52 (369)
Q Consensus 1 ~~~~~~~~~~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~--~Ga~~vivp~~~-------------------------- 52 (369)
|..-.|.....+|+|+.-. .+++...++.|.+ .|..++.+-+..
T Consensus 1 M~~~~~~~~~~~vlVTGat--------G~IG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (362)
T 3sxp_A 1 MRYIDDELENQTILITGGA--------GFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEV 72 (362)
T ss_dssp CCSSSCCCTTCEEEEETTT--------SHHHHHHHHHHHHHCTTSEEEEEECCCCC-------CCCCCCGGGGTTCCSEE
T ss_pred CcccchhcCCCEEEEECCC--------CHHHHHHHHHHHhhCCCCeEEEEECCCccccccccchhhhhhhhhccccCceE
Confidence 4444444455688887654 5789999999998 899988774311
Q ss_pred ------Chhhhhhh-cCCCCEEEECCCC
Q 017539 53 ------GVHMLLDS-FEPIHGVLLCEGE 73 (369)
Q Consensus 53 ------~~~~l~~~-l~~~DGlll~GG~ 73 (369)
+.+.+... +..+|.||-+.|.
T Consensus 73 ~~~Dl~d~~~~~~~~~~~~D~vih~A~~ 100 (362)
T 3sxp_A 73 IAADINNPLDLRRLEKLHFDYLFHQAAV 100 (362)
T ss_dssp EECCTTCHHHHHHHTTSCCSEEEECCCC
T ss_pred EECCCCCHHHHHHhhccCCCEEEECCcc
Confidence 23344444 5689999988773
No 175
>3dzv_A 4-methyl-5-(beta-hydroxyethyl)thiazole kinase; NP_816404.1, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.57A {Enterococcus faecalis}
Probab=32.74 E-value=2e+02 Score=26.25 Aligned_cols=51 Identities=14% Similarity=0.195 Sum_probs=36.2
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEG 72 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG 72 (369)
.|.|--+++... ...-.+.+...||.|++.. .++++.+..+..|+|+|--|
T Consensus 17 ~Plvh~iTN~V~---------~n~~AN~~La~GasP~M~~---~~~e~~e~~~~a~alvIn~G 67 (273)
T 3dzv_A 17 APLIQCITNEIT---------CESMANALLYIDAKPIMAD---DPREFPQMFQQTSALVLNLG 67 (273)
T ss_dssp CCEEEEECCTTT---------HHHHHHHHHHTTCEEECCC---CGGGHHHHHTTCSEEEEECC
T ss_pred CCEEEEecCcch---------hhhHHHHHHHcCCchhhcC---CHHHHHHHHHHCCeEEEecC
Confidence 466666665532 1223567888999999874 56777888888999999766
No 176
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=32.57 E-value=95 Score=25.85 Aligned_cols=62 Identities=16% Similarity=0.213 Sum_probs=42.4
Q ss_pred hHHHHHHHHCCCEEEEEcCCC--------C------hhhhhhhcCCCCEEEECCCC-CCCCCCccccCCCCChhHHHHHH
Q 017539 32 EYHLDLIVGYGAVPAIVPRVS--------G------VHMLLDSFEPIHGVLLCEGE-DIDPSLYEAETSNLSPEELEEIR 96 (369)
Q Consensus 32 ~~~l~~l~~~Ga~~vivp~~~--------~------~~~l~~~l~~~DGlll~GG~-didp~~y~~~~~~~~~~~~~~i~ 96 (369)
..+.++|...|..++..|... + .+. .+....+|.++|..|- |+
T Consensus 64 ~~~~~~L~~~g~~v~~~p~~~~~~~~~k~~~Dv~laiD~-~~~a~~~d~~vLvSgD~DF--------------------- 121 (165)
T 2qip_A 64 RQFHHILRGVGFEVMLKPYIQRRDGSAKGDWDVGITLDA-IEIAPDVDRVILVSGDGDF--------------------- 121 (165)
T ss_dssp HHHHHHHHHHTCEEEECCCCCCSSCCCSCCCHHHHHHHH-HHHGGGCSEEEEECCCGGG---------------------
T ss_pred HHHHHHHHHCCcEEEEEeeeeccCCccCCCccHHHHHHH-HHhhccCCEEEEEECChhH---------------------
Confidence 457889999999988766420 1 222 2234679999988772 21
Q ss_pred hhcCCCCccCchhhHHHHHHHHHHHHc-CCCEEEEeH
Q 017539 97 RLHTSDTAIDKEKDSIELRLAKLCLER-NIPYLGICR 132 (369)
Q Consensus 97 ~~~~~~~~~~~~rd~~e~~li~~~~e~-~iPiLGICl 132 (369)
..+++.+.++ |+.|.|++.
T Consensus 122 -----------------~plv~~lr~~~G~~V~v~g~ 141 (165)
T 2qip_A 122 -----------------SLLVERIQQRYNKKVTVYGV 141 (165)
T ss_dssp -----------------HHHHHHHHHHHCCEEEEEEC
T ss_pred -----------------HHHHHHHHHHcCcEEEEEeC
Confidence 3577888886 999999984
No 177
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=32.48 E-value=1.1e+02 Score=26.84 Aligned_cols=62 Identities=8% Similarity=-0.061 Sum_probs=35.9
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHC-CCEEEEEcC---CCChhh----hhhh-cCCCCEEEECCC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGY-GAVPAIVPR---VSGVHM----LLDS-FEPIHGVLLCEG 72 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~-Ga~~vivp~---~~~~~~----l~~~-l~~~DGlll~GG 72 (369)
..+||++.... ..+.+...+....-+.+.+. |..+.+... ..+.+. +... -..+||||+.+.
T Consensus 8 ~~~Igvi~~~~-~~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 78 (304)
T 3gbv_A 8 KYTFACLLPKH-LEGEYWTDVQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPT 78 (304)
T ss_dssp CEEEEEEEECC-CTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCS
T ss_pred cceEEEEecCC-CCchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence 45788775432 13455556666666778877 777666532 123221 2211 147999999975
No 178
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=32.41 E-value=32 Score=30.12 Aligned_cols=58 Identities=14% Similarity=0.051 Sum_probs=32.0
Q ss_pred EEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChh----hhhhhc-CCCCEEEECCC
Q 017539 13 VLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVH----MLLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 13 IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~----~l~~~l-~~~DGlll~GG 72 (369)
||++... ..+.+..-+-....+.+.+.|..+++.....+.+ .+.... ..+||||+.+.
T Consensus 2 Igvi~~~--~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 64 (276)
T 2h0a_A 2 VSVLLPF--VATEFYRRLVEGIEGVLLEQRYDLALFPILSLARLKRYLENTTLAYLTDGLILASY 64 (276)
T ss_dssp EEEEECC--SCCHHHHHHHHHHHHHHGGGTCEEEECCCCSCCCCC---------CCCSEEEEESC
T ss_pred EEEEECC--CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCchhhHHHHHHHHHhCCCCEEEEecC
Confidence 6666532 2244444455555667778899888765432211 122211 37999999865
No 179
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=31.19 E-value=75 Score=27.93 Aligned_cols=61 Identities=15% Similarity=0.141 Sum_probs=39.0
Q ss_pred CCcEEEEecCcccCcCcccccchhHHHHHHHHCCCE-EEEEcCCCChhhh---hhhc--CCCCEEEECC
Q 017539 9 ILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAV-PAIVPRVSGVHML---LDSF--EPIHGVLLCE 71 (369)
Q Consensus 9 ~~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~-~vivp~~~~~~~l---~~~l--~~~DGlll~G 71 (369)
...+||++.... .+.+...+-...-+.+.+.|.. +++.....+.+.. .+.+ ..+||||+.+
T Consensus 9 ~~~~Igvi~~~~--~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 9 KSKMIGIIIPDL--NNRFYAQIIDGIQEVIQKEGYTALISFSTNSDVKKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp CCCEEEEEESCT--TSHHHHHHHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred CCCEEEEEeCCC--CChhHHHHHHHHHHHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc
Confidence 346888886542 2455555666667788889999 7776655443321 1111 3799999987
No 180
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=30.86 E-value=55 Score=28.36 Aligned_cols=59 Identities=17% Similarity=0.129 Sum_probs=40.0
Q ss_pred EEEEe-cCcc--cCcCcccccchhHHHHHHHHCCCEEEEEcCC--CChhhhhhhcCCCCEEEEC
Q 017539 12 RVLIV-SRRS--VRKNKFVDFVGEYHLDLIVGYGAVPAIVPRV--SGVHMLLDSFEPIHGVLLC 70 (369)
Q Consensus 12 ~IgIv-~~~~--~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~--~~~~~l~~~l~~~DGlll~ 70 (369)
+|+|+ +.+. ..++.....+.+.+++.+.+.|+.+.++... .+.+.+.+.+...|+|||.
T Consensus 14 ~iLii~gsP~~~~s~~s~~~~l~~~~~~~~~~~g~~v~~~dL~~~~d~~~~~~~l~~AD~iV~~ 77 (204)
T 2amj_A 14 NILIINGAKKFAHSNGQLNDTLTEVADGTLRDLGHDVRIVRADSDYDVKAEVQNFLWADVVIWQ 77 (204)
T ss_dssp EEEEEECCC------CHHHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHHCSEEEEE
T ss_pred CEEEEEcCCCcccCcCcHHHHHHHHHHHHHHHcCCEEEEEeCCccccHHHHHHHHHhCCEEEEE
Confidence 45555 3332 1245677778888899999999988877643 2455666677789999996
No 181
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=29.90 E-value=58 Score=27.78 Aligned_cols=56 Identities=9% Similarity=-0.032 Sum_probs=34.9
Q ss_pred cEEEEec-CcccCcCcccccchhHHHHHHHHCCCEEEEEcCCC---------------------C-hhhhhhhcCCCCEE
Q 017539 11 PRVLIVS-RRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS---------------------G-VHMLLDSFEPIHGV 67 (369)
Q Consensus 11 P~IgIv~-~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~---------------------~-~~~l~~~l~~~DGl 67 (369)
.+|+|+. .+ +.....+.+...+.+.+.|+.+.++.... + ...+.+.+...|+|
T Consensus 7 mkilii~~S~----~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~i 82 (211)
T 1ydg_A 7 VKLAIVFYSS----TGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAI 82 (211)
T ss_dssp CEEEEEECCS----SSHHHHHHHHHHHHHHHTTCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCCHHHHHHCSEE
T ss_pred CeEEEEEECC----CChHHHHHHHHHHHHhcCCCEEEEEeccccccchhhhcccccccccccccchhHHHHHHHHHCCEE
Confidence 3566663 23 22345667777888888999887776433 1 12234445679999
Q ss_pred EEC
Q 017539 68 LLC 70 (369)
Q Consensus 68 ll~ 70 (369)
||.
T Consensus 83 i~g 85 (211)
T 1ydg_A 83 VFS 85 (211)
T ss_dssp EEE
T ss_pred EEE
Confidence 996
No 182
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=29.82 E-value=48 Score=29.32 Aligned_cols=59 Identities=8% Similarity=-0.027 Sum_probs=37.7
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhhc-CCCCEEEECCC
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~----l~~~l-~~~DGlll~GG 72 (369)
.+||++... .+.+...+.....+.+.+.|..+++.....+.+. +.... ..+||||+.+.
T Consensus 9 ~~Igvi~~~---~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 72 (288)
T 2qu7_A 9 NIIAFIVPD---QNPFFTEVLTEISHECQKHHLHVAVASSEENEDKQQDLIETFVSQNVSAIILVPV 72 (288)
T ss_dssp EEEEEEESS---CCHHHHHHHHHHHHHHGGGTCEEEEEECTTCHHHHHHHHHHHHHTTEEEEEECCS
T ss_pred CEEEEEECC---CCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCccEEEEecC
Confidence 578888644 3555555555566677788999888765444322 12111 47999999875
No 183
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=28.56 E-value=72 Score=29.52 Aligned_cols=60 Identities=23% Similarity=0.249 Sum_probs=38.8
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCC-C------------hhhhhhhcCCCCEEEEC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS-G------------VHMLLDSFEPIHGVLLC 70 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~-~------------~~~l~~~l~~~DGlll~ 70 (369)
+++|+|+..- .+++.....+.+..++.+...|+.+.++.... . ...+.+.+...|||||.
T Consensus 58 ~mKILiI~GS-~R~~S~T~~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~a 130 (279)
T 2fzv_A 58 PVRILLLYGS-LRARSFSRLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVWC 130 (279)
T ss_dssp CCEEEEEESC-CSSSCHHHHHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEEE
T ss_pred CCEEEEEEeC-CCCCCHHHHHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCCeEEEE
Confidence 4567776432 23455566777778888888999888765321 1 22344556678999996
No 184
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=28.56 E-value=1.1e+02 Score=27.70 Aligned_cols=62 Identities=6% Similarity=-0.023 Sum_probs=36.5
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhhc-CCCCEEEECCC
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~----l~~~l-~~~DGlll~GG 72 (369)
.+||++.......+.|.+.+.+...+...+.|..++++....+.+. +.... ..+||||++|.
T Consensus 6 ~~Ig~v~~~~~~d~~f~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~~vdgIi~~~~ 72 (296)
T 2hqb_A 6 GMVGLLVEDTIDDQGWNRKAYEGLLNIHSNLDVDVVLEEGVNSEQKAHRRIKELVDGGVNLIFGHGH 72 (296)
T ss_dssp CEEEEECCCC----CCTHHHHHHHHHHHHHSCCEEEEECCCCSHHHHHHHHHHHHHTTCCEEEECST
T ss_pred cEEEEEECCCCCCCcHHHHHHHHHHHHHHHhCCeEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEcCH
Confidence 4788876422222356666666667778889998887754333221 22221 36999999864
No 185
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=27.61 E-value=1e+02 Score=28.07 Aligned_cols=56 Identities=14% Similarity=0.041 Sum_probs=41.4
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCC-------------CChhhhhhhcCCCCEEEECCCC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRV-------------SGVHMLLDSFEPIHGVLLCEGE 73 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~-------------~~~~~l~~~l~~~DGlll~GG~ 73 (369)
..+|+|+.-. .+++...++.|.+.|..++.+-+. .+.+.+.+.++.+|.||-+.|.
T Consensus 19 ~~~vlVtGat--------G~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~ 87 (347)
T 4id9_A 19 SHMILVTGSA--------GRVGRAVVAALRTQGRTVRGFDLRPSGTGGEEVVGSLEDGQALSDAIMGVSAVLHLGAF 87 (347)
T ss_dssp --CEEEETTT--------SHHHHHHHHHHHHTTCCEEEEESSCCSSCCSEEESCTTCHHHHHHHHTTCSEEEECCCC
T ss_pred CCEEEEECCC--------ChHHHHHHHHHHhCCCEEEEEeCCCCCCCccEEecCcCCHHHHHHHHhCCCEEEECCcc
Confidence 4567776544 578999999999999988876542 2345667778899999999874
No 186
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=26.69 E-value=82 Score=25.08 Aligned_cols=56 Identities=20% Similarity=0.189 Sum_probs=32.5
Q ss_pred CCCCCCCcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhc--CCCCEEEE
Q 017539 4 HDLSVILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSF--EPIHGVLL 69 (369)
Q Consensus 4 ~~~~~~~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l--~~~DGlll 69 (369)
+.|+..+.+|+||..... +.....+.+++.|..++-.- .+.++..+.+ ..+|-||+
T Consensus 2 s~m~~r~~rILiVdD~~~--------~~~~l~~~L~~~G~~v~~~a--~~g~eAl~~~~~~~~Dlvll 59 (123)
T 2lpm_A 2 SHMTERRLRVLVVEDESM--------IAMLIEDTLCELGHEVAATA--SRMQEALDIARKGQFDIAII 59 (123)
T ss_dssp CCCCCCCCCEEEESSSTT--------TSHHHHHHHHHHCCCCCBCS--CCHHHHHHHHHHCCSSEEEE
T ss_pred CCCCCCCCEEEEEeCCHH--------HHHHHHHHHHHCCCEEEEEE--CCHHHHHHHHHhCCCCEEEE
Confidence 457777778999976532 23344556778898765322 2322222222 36888876
No 187
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}
Probab=26.59 E-value=83 Score=29.53 Aligned_cols=10 Identities=20% Similarity=0.414 Sum_probs=8.3
Q ss_pred CCCEEEECCC
Q 017539 63 PIHGVLLCEG 72 (369)
Q Consensus 63 ~~DGlll~GG 72 (369)
.+|.|+++..
T Consensus 65 ~~D~V~i~tp 74 (359)
T 3e18_A 65 KVDAVLIATP 74 (359)
T ss_dssp TCCEEEECSC
T ss_pred CCCEEEEcCC
Confidence 6999999865
No 188
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=26.15 E-value=91 Score=27.94 Aligned_cols=61 Identities=11% Similarity=0.030 Sum_probs=38.0
Q ss_pred CCcEEEEecCcccCcCcccccchhHHHHHHHHCCC------EEEEEcCCCChhhhhh---hc--CCCCEEEECCC
Q 017539 9 ILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGA------VPAIVPRVSGVHMLLD---SF--EPIHGVLLCEG 72 (369)
Q Consensus 9 ~~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga------~~vivp~~~~~~~l~~---~l--~~~DGlll~GG 72 (369)
....|||+. ...|.+..-+-+...+.+.+.|. ..++.....+.+.... .+ .++||||++|.
T Consensus 7 ~t~~IGvi~---~~~~p~~~~~~~gi~~~l~~~Gy~~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~ 78 (302)
T 2qh8_A 7 KTAKVAVSQ---IVEHPALDATRQGLLDGLKAKGYEEGKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGIAT 78 (302)
T ss_dssp CCEEEEEEE---SSCCHHHHHHHHHHHHHHHHTTCCBTTTEEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEESH
T ss_pred CCcEEEEEE---eccChhHHHHHHHHHHHHHHcCCCCCCceEEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCh
Confidence 346899983 23466666677777888999998 4444444334332211 11 37999999864
No 189
>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Probab=25.85 E-value=2e+02 Score=24.37 Aligned_cols=56 Identities=16% Similarity=0.215 Sum_probs=39.3
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHC--CCEEEEEcCC------------------CChhhhhhhcCCCCEEEE
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGY--GAVPAIVPRV------------------SGVHMLLDSFEPIHGVLL 69 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~--Ga~~vivp~~------------------~~~~~l~~~l~~~DGlll 69 (369)
+.+|+|+.-. .+++...++.+.+. |..++.+-+. .+.+.+.+.++.+|.||-
T Consensus 4 ~~~ilVtGas--------G~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~ 75 (253)
T 1xq6_A 4 LPTVLVTGAS--------GRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVI 75 (253)
T ss_dssp CCEEEEESTT--------SHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEE
T ss_pred CCEEEEEcCC--------cHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhcCCCeeEEEecCCCHHHHHHHHcCCCEEEE
Confidence 4577777544 46788888888888 6777665432 234566677788999999
Q ss_pred CCCC
Q 017539 70 CEGE 73 (369)
Q Consensus 70 ~GG~ 73 (369)
+.|.
T Consensus 76 ~a~~ 79 (253)
T 1xq6_A 76 LTSA 79 (253)
T ss_dssp CCCC
T ss_pred eccc
Confidence 8764
No 190
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Probab=25.81 E-value=1.7e+02 Score=25.25 Aligned_cols=42 Identities=26% Similarity=0.171 Sum_probs=24.4
Q ss_pred CCCCCCCCCCcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcC
Q 017539 1 MAAHDLSVILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPR 50 (369)
Q Consensus 1 ~~~~~~~~~~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~ 50 (369)
|+.+.|+....+|+|+.-. ..++...++.+.+.|+.++++-+
T Consensus 3 ~~~~~~~~~~k~vlVTGas--------ggiG~~~a~~l~~~G~~V~~~~r 44 (265)
T 2o23_A 3 MAAACRSVKGLVAVITGGA--------SGLGLATAERLVGQGASAVLLDL 44 (265)
T ss_dssp -----CCCTTCEEEEETTT--------SHHHHHHHHHHHHTTCEEEEEEC
T ss_pred ccccccCCCCCEEEEECCC--------ChHHHHHHHHHHHCCCEEEEEeC
Confidence 4444454444577776543 35777778888888887776643
No 191
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=25.59 E-value=75 Score=27.39 Aligned_cols=60 Identities=18% Similarity=0.156 Sum_probs=36.8
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhh---hhhhc--CCCCEEEECCC
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM---LLDSF--EPIHGVLLCEG 72 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~---l~~~l--~~~DGlll~GG 72 (369)
.+||++.... .+.+..-+-...-+.+.+.|..+++.....+.+. +.+.+ ..+||||+.+.
T Consensus 3 ~~Igvi~~~~--~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 67 (255)
T 1byk_A 3 KVVAIIVTRL--DSLSENLAVQTMLPAFYEQGYDPIMMESQFSPQLVAEHLGVLKRRNIDGVVLFGF 67 (255)
T ss_dssp CEEEEEESCT--TCHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CEEEEEeCCC--CCccHHHHHHHHHHHHHHcCCEEEEEeCCCcHHHHHHHHHHHHhcCCCEEEEecC
Confidence 4688876432 2444444555566677888999888765444322 11222 47999999875
No 192
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}
Probab=25.20 E-value=1.5e+02 Score=28.42 Aligned_cols=31 Identities=19% Similarity=-0.015 Sum_probs=18.8
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCC-CEEE
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYG-AVPA 46 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~G-a~~v 46 (369)
+-+|||+..-. ..+++..|+..+...+ ..++
T Consensus 37 ~~rvgiiG~G~------~~~ig~~h~~~~~~~~~~~lv 68 (417)
T 3v5n_A 37 RIRLGMVGGGS------GAFIGAVHRIAARLDDHYELV 68 (417)
T ss_dssp CEEEEEESCC--------CHHHHHHHHHHHHTSCEEEE
T ss_pred cceEEEEcCCC------chHHHHHHHHHHhhCCCcEEE
Confidence 34799996432 1356677777777766 3443
No 193
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=24.88 E-value=1.9e+02 Score=25.75 Aligned_cols=55 Identities=18% Similarity=0.404 Sum_probs=41.1
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCC---------------ChhhhhhhcCCCCEEEECCCC
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS---------------GVHMLLDSFEPIHGVLLCEGE 73 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~---------------~~~~l~~~l~~~DGlll~GG~ 73 (369)
++|+|+.-. .+++...++.|.+.|..++.+-+.. ..+.+.+.++.+|.||-+.|.
T Consensus 3 ~~vlVtGat--------G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~d~Vih~a~~ 72 (311)
T 3m2p_A 3 LKIAVTGGT--------GFLGQYVVESIKNDGNTPIILTRSIGNKAINDYEYRVSDYTLEDLINQLNDVDAVVHLAAT 72 (311)
T ss_dssp CEEEEETTT--------SHHHHHHHHHHHHTTCEEEEEESCCC-----CCEEEECCCCHHHHHHHTTTCSEEEECCCC
T ss_pred CEEEEECCC--------cHHHHHHHHHHHhCCCEEEEEeCCCCcccCCceEEEEccccHHHHHHhhcCCCEEEEcccc
Confidence 478887654 4788889999999998887665431 145566778899999999875
No 194
>2r47_A Uncharacterized protein MTH_862; unknown function, structural genomics, APC5901, PSI-2; 1.88A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=24.68 E-value=27 Score=29.82 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=15.4
Q ss_pred HHHHHHHHcCCCEEEEeHHHHHHHH
Q 017539 115 RLAKLCLERNIPYLGICRGSQVLNV 139 (369)
Q Consensus 115 ~li~~~~e~~iPiLGIClG~QlL~~ 139 (369)
.+|...++.+..+.||| +|-+..
T Consensus 108 ~li~ki~~~~~kiiGvC--Fms~F~ 130 (157)
T 2r47_A 108 KLVEDALEEGGELMGLC--YMDMFA 130 (157)
T ss_dssp HHHHHHEEEEEEEEEEE--ETTHHH
T ss_pred HHHHHhhcCCCCEEEEE--hHHHHH
Confidence 56666665667899999 444444
No 195
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=24.64 E-value=95 Score=27.65 Aligned_cols=60 Identities=8% Similarity=-0.079 Sum_probs=37.6
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCC---EEEEE--cCCCChhhhh---h-hc-CCCCEEEECCC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGA---VPAIV--PRVSGVHMLL---D-SF-EPIHGVLLCEG 72 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga---~~viv--p~~~~~~~l~---~-~l-~~~DGlll~GG 72 (369)
+..|||+ . . ..|.+.+-+-+..-+.+.+.|. .+.++ ....+.+... + .. .++||||+.|.
T Consensus 2 ~~~Igvi-~-~-~~~p~~~~i~~gi~~~l~~~gy~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~ 71 (295)
T 3lft_A 2 NAKIGVL-Q-F-VSHPSLDLIYKGIQDGLAEEGYKDDQVKIDFMNSEGDQSKVATMSKQLVANGNDLVVGIAT 71 (295)
T ss_dssp CEEEEEE-E-C-SCCHHHHHHHHHHHHHHHHTTCCGGGEEEEEEECTTCHHHHHHHHHHHTTSSCSEEEEESH
T ss_pred ceEEEEE-E-c-cCChhHHHHHHHHHHHHHHcCCCCCceEEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCc
Confidence 4689998 2 2 3466777777778888999998 65443 3333332211 1 12 37999999864
No 196
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=23.89 E-value=2.3e+02 Score=23.01 Aligned_cols=55 Identities=15% Similarity=0.094 Sum_probs=38.7
Q ss_pred cEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCC-------------------CChhhhhhhcCCCCEEEECC
Q 017539 11 PRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRV-------------------SGVHMLLDSFEPIHGVLLCE 71 (369)
Q Consensus 11 P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~-------------------~~~~~l~~~l~~~DGlll~G 71 (369)
.+|+|+.-. .+++...++.+.+.|..++.+-+. .+.+.+.+.++.+|.||.+-
T Consensus 4 ~~ilVtGat--------G~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a 75 (206)
T 1hdo_A 4 KKIAIFGAT--------GQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLL 75 (206)
T ss_dssp CEEEEESTT--------SHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECC
T ss_pred CEEEEEcCC--------cHHHHHHHHHHHHCCCeEEEEEeChhhcccccCCceEEEEecCCCHHHHHHHHcCCCEEEECc
Confidence 367776543 468888888888888887766432 12345666777899999887
Q ss_pred CC
Q 017539 72 GE 73 (369)
Q Consensus 72 G~ 73 (369)
|.
T Consensus 76 ~~ 77 (206)
T 1hdo_A 76 GT 77 (206)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 197
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=23.64 E-value=1.2e+02 Score=26.04 Aligned_cols=59 Identities=17% Similarity=0.101 Sum_probs=30.7
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCC------CC--------hhhhhhhcCCCCEEEEC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRV------SG--------VHMLLDSFEPIHGVLLC 70 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~------~~--------~~~l~~~l~~~DGlll~ 70 (369)
+++|+|++.- .+++.+...+.++ +..+...|+.+.++... .+ ...+.+.+...||+||.
T Consensus 2 ~k~I~vi~GS-~R~~S~~~~la~~-~~~~~~~~~~~~~idl~dLP~~~~d~~~~~p~~~~~l~~~i~~aD~~ii~ 74 (190)
T 3u7r_A 2 VKTVAVMVGS-LRKDSLNHKLMKV-LQKLAEGRLEFHLLHIGDLPHYNDDLWADAPESVLRLKDRIEHSDAVLAI 74 (190)
T ss_dssp CEEEEEEESC-CSTTCHHHHHHHH-HHHHHTTTEEEEECCGGGSCCCCGGGGGGCCHHHHHHHHHHHTSSEEEEE
T ss_pred CCEEEEEECC-CCCCCHHHHHHHH-HHHhccCCCEEEEEecccCCCCCCCcccCCCHHHHHHHHHHHhCCcEEEe
Confidence 3577777432 2233333334433 33344567777766421 11 12334566789999997
No 198
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=23.42 E-value=1.3e+02 Score=27.55 Aligned_cols=31 Identities=19% Similarity=0.320 Sum_probs=21.2
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEE
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIV 48 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~viv 48 (369)
+-+|||+..- .+++..|++.+...|+.++-+
T Consensus 3 mirvgiIG~g--------G~i~~~h~~~l~~~~~~lvav 33 (312)
T 3o9z_A 3 MTRFALTGLA--------GYIAPRHLKAIKEVGGVLVAS 33 (312)
T ss_dssp CCEEEEECTT--------SSSHHHHHHHHHHTTCEEEEE
T ss_pred ceEEEEECCC--------hHHHHHHHHHHHhCCCEEEEE
Confidence 3578888653 135567888888888777644
No 199
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=22.97 E-value=1.6e+02 Score=27.10 Aligned_cols=32 Identities=16% Similarity=-0.085 Sum_probs=16.7
Q ss_pred CCCCCcEEEEecCcccCcCcccccchhHHHHHHHHC-CCEEE
Q 017539 6 LSVILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGY-GAVPA 46 (369)
Q Consensus 6 ~~~~~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~-Ga~~v 46 (369)
|++.+.+|||+..- .++..+++.+.+. +..++
T Consensus 1 M~m~~~~igiiG~G---------~~g~~~~~~l~~~~~~~l~ 33 (330)
T 3e9m_A 1 MSLDKIRYGIMSTA---------QIVPRFVAGLRESAQAEVR 33 (330)
T ss_dssp --CCCEEEEECSCC---------TTHHHHHHHHHHSSSEEEE
T ss_pred CCCCeEEEEEECch---------HHHHHHHHHHHhCCCcEEE
Confidence 34455689998643 1344556666653 33443
No 200
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=22.94 E-value=93 Score=27.94 Aligned_cols=58 Identities=10% Similarity=0.121 Sum_probs=35.6
Q ss_pred CCCCCcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCC-----Chhhh---hhhcCCCCEEEECCC
Q 017539 6 LSVILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVS-----GVHML---LDSFEPIHGVLLCEG 72 (369)
Q Consensus 6 ~~~~~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~-----~~~~l---~~~l~~~DGlll~GG 72 (369)
|.+.-++|+| +|+.. -.+.+.+.|+++|+.++.+|.-. +...+ ...+..+|.|||+-.
T Consensus 10 ~~~~g~~Ilv-TRp~~--------~a~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~l~~~l~~l~~~d~vifTS~ 75 (269)
T 3re1_A 10 MDMSAWRLLL-TRPAE--------ESAALARVLADAGIFSSSLPLLETEPLPLTPAQRSIIFELLNYSAVIVVSK 75 (269)
T ss_dssp ---CCCEEEE-CSCHH--------HHHHHHHHHHTTTCEEEECCCCEEEECCCHHHHHHHHHTGGGSSEEEECSH
T ss_pred cccCCCEEEE-eCChH--------HHHHHHHHHHHCCCCEEEcCCEEEecCCCcHHHHHHHHhccCCCEEEEECH
Confidence 3344457766 55532 13457889999999999888532 11112 223567999999965
No 201
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Probab=22.83 E-value=87 Score=29.00 Aligned_cols=54 Identities=15% Similarity=0.095 Sum_probs=42.2
Q ss_pred EEEEecCcccCcCcccccchhHHHHHHHHCCC-EEEEEcCCCChhhhhhhcCCCCEEEECCCC
Q 017539 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGA-VPAIVPRVSGVHMLLDSFEPIHGVLLCEGE 73 (369)
Q Consensus 12 ~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga-~~vivp~~~~~~~l~~~l~~~DGlll~GG~ 73 (369)
+|+|+.-. .+++...++.|.+.|. .++.+-...+.+.+.+.++.+|.||-+.|.
T Consensus 2 ~VlVtGat--------G~iG~~l~~~L~~~g~~~v~~~d~~~d~~~l~~~~~~~d~Vih~a~~ 56 (369)
T 3st7_A 2 NIVITGAK--------GFVGKNLKADLTSTTDHHIFEVHRQTKEEELESALLKADFIVHLAGV 56 (369)
T ss_dssp EEEEETTT--------SHHHHHHHHHHHHHCCCEEEECCTTCCHHHHHHHHHHCSEEEECCCS
T ss_pred EEEEECCC--------CHHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHhccCCEEEECCcC
Confidence 46666544 5788899999999998 777776545777888888899999998774
No 202
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}
Probab=22.81 E-value=1.7e+02 Score=26.12 Aligned_cols=20 Identities=5% Similarity=0.044 Sum_probs=14.6
Q ss_pred ChhhhhhhcCCCCEEEECCC
Q 017539 53 GVHMLLDSFEPIHGVLLCEG 72 (369)
Q Consensus 53 ~~~~l~~~l~~~DGlll~GG 72 (369)
+.+.+...++.+|.||.+-|
T Consensus 67 d~~~l~~a~~~~d~vi~~a~ 86 (321)
T 3c1o_A 67 EHEKMVSVLKQVDIVISALP 86 (321)
T ss_dssp CHHHHHHHHTTCSEEEECCC
T ss_pred CHHHHHHHHcCCCEEEECCC
Confidence 34556677778898888866
No 203
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=22.77 E-value=1.3e+02 Score=27.24 Aligned_cols=61 Identities=10% Similarity=0.017 Sum_probs=38.0
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhh----hhhhc-CCCCEEEECCC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHM----LLDSF-EPIHGVLLCEG 72 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~----l~~~l-~~~DGlll~GG 72 (369)
..+||++.... .+.+...+-...-+.+.+.|..+++.....+.+. +.... ..+||||+.+.
T Consensus 58 ~~~Igvi~~~~--~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 123 (340)
T 1qpz_A 58 TKSIGLLATSS--EAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCS 123 (340)
T ss_dssp CSEEEEEESCS--CSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CCEEEEEeCCC--CChHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCC
Confidence 35788886432 3445555555566677889998887765444332 22212 37999999865
No 204
>2c92_A 6,7-dimethyl-8-ribityllumazine synthase; transferase, riboflavin biosynthesis, inhibitor binding; HET: TP6; 1.6A {Mycobacterium tuberculosis} PDB: 1w29_A* 1w19_A* 2c94_A* 2c97_A* 2c9b_A* 2c9d_A* 2vi5_A*
Probab=22.51 E-value=1.2e+02 Score=25.67 Aligned_cols=59 Identities=15% Similarity=0.013 Sum_probs=34.8
Q ss_pred CcEEEEec-CcccCcCcccccchhHHHHHHHHCCC---EEEEEcCCCC-hhhhhhhcCCCCEEEECC
Q 017539 10 LPRVLIVS-RRSVRKNKFVDFVGEYHLDLIVGYGA---VPAIVPRVSG-VHMLLDSFEPIHGVLLCE 71 (369)
Q Consensus 10 ~P~IgIv~-~~~~~~~~~~~~v~~~~l~~l~~~Ga---~~vivp~~~~-~~~l~~~l~~~DGlll~G 71 (369)
..+|+|+. ++.. ...+-+.+.-++.+.++|+ .++.||=... +-.+....+.+|+||-.|
T Consensus 17 ~~ri~IV~arfn~---~I~~~Ll~gA~~~l~~~G~~~i~v~~VPGafEiP~aak~la~~yDavIaLG 80 (160)
T 2c92_A 17 GVRLAIVASSWHG---KICDALLDGARKVAAGCGLDDPTVVRVLGAIEIPVVAQELARNHDAVVALG 80 (160)
T ss_dssp TCCEEEEEECSSH---HHHHHHHHHHHHHHHHTTCSCCEEEEESSGGGHHHHHHHHHTSCSEEEEEE
T ss_pred CCEEEEEEEeCcH---HHHHHHHHHHHHHHHHcCCCceEEEECCcHHHHHHHHHHHHhcCCEEEEEe
Confidence 35788885 4421 2344555667788999997 4556663222 112233344799988776
No 205
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=22.23 E-value=1.5e+02 Score=27.00 Aligned_cols=56 Identities=14% Similarity=0.124 Sum_probs=39.9
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCC------------------------------CChhhhhh
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRV------------------------------SGVHMLLD 59 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~------------------------------~~~~~l~~ 59 (369)
..+|+|+.-. .+++...++.|.+.|..++.+-+. .+.+.+..
T Consensus 25 ~~~vlVtGat--------G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~ 96 (351)
T 3ruf_A 25 PKTWLITGVA--------GFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQ 96 (351)
T ss_dssp CCEEEEETTT--------SHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHH
T ss_pred CCeEEEECCC--------cHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHH
Confidence 4578887654 478888888888888877766431 13445666
Q ss_pred hcCCCCEEEECCCC
Q 017539 60 SFEPIHGVLLCEGE 73 (369)
Q Consensus 60 ~l~~~DGlll~GG~ 73 (369)
.++.+|.||-+.|.
T Consensus 97 ~~~~~d~Vih~A~~ 110 (351)
T 3ruf_A 97 VMKGVDHVLHQAAL 110 (351)
T ss_dssp HTTTCSEEEECCCC
T ss_pred HhcCCCEEEECCcc
Confidence 77789999999874
No 206
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=21.99 E-value=75 Score=25.24 Aligned_cols=17 Identities=12% Similarity=0.198 Sum_probs=13.4
Q ss_pred HHHHHHHHcCCCEEEEe
Q 017539 115 RLAKLCLERNIPYLGIC 131 (369)
Q Consensus 115 ~li~~~~e~~iPiLGIC 131 (369)
.-|+.|.+.++|++||=
T Consensus 58 ~EI~~A~~~gkpIigV~ 74 (111)
T 1eiw_A 58 GAVDLARKSSKPIITVR 74 (111)
T ss_dssp HHHHHHTTTTCCEEEEC
T ss_pred HHHHHHHHcCCCEEEEE
Confidence 44577778999999984
No 207
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=21.76 E-value=1.4e+02 Score=24.53 Aligned_cols=43 Identities=14% Similarity=0.133 Sum_probs=29.5
Q ss_pred ccchhHHHHHHHHCCCEEEEEcCCC--ChhhhhhhcCCCCEEEEC
Q 017539 28 DFVGEYHLDLIVGYGAVPAIVPRVS--GVHMLLDSFEPIHGVLLC 70 (369)
Q Consensus 28 ~~v~~~~l~~l~~~Ga~~vivp~~~--~~~~l~~~l~~~DGlll~ 70 (369)
..+.+...+.+.+.|..+.++.... +.+++...+..+|+|||.
T Consensus 19 ~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~d~ii~G 63 (159)
T 3fni_A 19 DRLAQAIINGITKTGVGVDVVDLGAAVDLQELRELVGRCTGLVIG 63 (159)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHTEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCeEEEEECcCcCCHHHHHHHHHhCCEEEEE
Confidence 3455666777888898877776543 455555556679999885
No 208
>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A
Probab=21.57 E-value=1e+02 Score=28.88 Aligned_cols=11 Identities=18% Similarity=0.193 Sum_probs=8.9
Q ss_pred CCCEEEECCCC
Q 017539 63 PIHGVLLCEGE 73 (369)
Q Consensus 63 ~~DGlll~GG~ 73 (369)
.+|.|+++-.+
T Consensus 65 ~vD~V~i~tp~ 75 (358)
T 3gdo_A 65 AIELVIVTTPS 75 (358)
T ss_dssp TCCEEEECSCT
T ss_pred CCCEEEEcCCc
Confidence 69999998653
No 209
>1v8a_A Hydroxyethylthiazole kinase; alpha-beta, ATP binding, transferase, structural genomics, riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii} PDB: 3hpd_A
Probab=21.50 E-value=2.2e+02 Score=25.56 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=34.4
Q ss_pred CCcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCC
Q 017539 9 ILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEG 72 (369)
Q Consensus 9 ~~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG 72 (369)
..|.|--+++... ...-.+.+...||.|++... .+++.+.++..|.|++-.|
T Consensus 14 ~~plvh~itn~v~---------~~~~an~~la~gasp~M~~~---~~e~~~~~~~~dalvi~~G 65 (265)
T 1v8a_A 14 RRPLVHNITNFVV---------MNTTANALLALGASPVMAHA---EEELEEMIRLADAVVINIG 65 (265)
T ss_dssp HCCEEEEECCTTT---------HHHHHHHHHHHTCEEEECCC---TTTHHHHHHHCSEEEEECT
T ss_pred cCCeEEEEcccee---------ecchHHHHHhcCCCccccCC---HHHHHHHHHHCCEEEEEEC
Confidence 3577776666632 12234567788999999753 4455566667999999545
No 210
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=21.40 E-value=98 Score=28.72 Aligned_cols=19 Identities=11% Similarity=0.081 Sum_probs=11.8
Q ss_pred ChhhhhhhcCCCCEEEECCC
Q 017539 53 GVHMLLDSFEPIHGVLLCEG 72 (369)
Q Consensus 53 ~~~~l~~~l~~~DGlll~GG 72 (369)
+.+++.+. ..+|+|+++--
T Consensus 85 d~~ell~~-~~iDaV~IatP 103 (393)
T 4fb5_A 85 DWRALIAD-PEVDVVSVTTP 103 (393)
T ss_dssp CHHHHHHC-TTCCEEEECSC
T ss_pred CHHHHhcC-CCCcEEEECCC
Confidence 44444332 36999999854
No 211
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*
Probab=21.18 E-value=2.1e+02 Score=25.57 Aligned_cols=19 Identities=11% Similarity=0.144 Sum_probs=13.4
Q ss_pred hhhhhhhcCCCCEEEECCC
Q 017539 54 VHMLLDSFEPIHGVLLCEG 72 (369)
Q Consensus 54 ~~~l~~~l~~~DGlll~GG 72 (369)
.+.+...++.+|.||.+.|
T Consensus 70 ~~~l~~a~~~~d~vi~~a~ 88 (318)
T 2r6j_A 70 HEKLVELMKKVDVVISALA 88 (318)
T ss_dssp HHHHHHHHTTCSEEEECCC
T ss_pred HHHHHHHHcCCCEEEECCc
Confidence 4456666777888888766
No 212
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}
Probab=21.12 E-value=2.5e+02 Score=24.09 Aligned_cols=11 Identities=18% Similarity=0.483 Sum_probs=8.9
Q ss_pred CCCEEEECCCC
Q 017539 63 PIHGVLLCEGE 73 (369)
Q Consensus 63 ~~DGlll~GG~ 73 (369)
.+|.||-..|.
T Consensus 90 ~id~vi~~Ag~ 100 (260)
T 3awd_A 90 RVDILVACAGI 100 (260)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 68999998774
No 213
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=20.88 E-value=1.1e+02 Score=26.92 Aligned_cols=37 Identities=8% Similarity=-0.054 Sum_probs=22.7
Q ss_pred EEEEecCcccCcCcccccchhHHHHHHHHC-CCEEEEEc
Q 017539 12 RVLIVSRRSVRKNKFVDFVGEYHLDLIVGY-GAVPAIVP 49 (369)
Q Consensus 12 ~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~-Ga~~vivp 49 (369)
.|+|+... .+++.....+.+..++.+.+. |+.+.++.
T Consensus 3 kIliI~gS-~r~~s~T~~la~~i~~~l~~~~g~~v~~~d 40 (242)
T 1sqs_A 3 KIFIYAGV-RNHNSKTLEYTKRLSSIISSRNNVDISFRT 40 (242)
T ss_dssp EEEEEECC-CCTTCHHHHHHHHHHHHHHHHSCCEEEEEC
T ss_pred eEEEEECC-CCCCChHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 45555321 122344556777778888877 88887764
No 214
>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*
Probab=20.85 E-value=2.2e+02 Score=26.21 Aligned_cols=64 Identities=11% Similarity=0.095 Sum_probs=37.7
Q ss_pred CCCCCCCC--CcEEEEecCcccCcCcccccchhHHHHHHHHC-CC-EEEEEcCC-----------------------CCh
Q 017539 2 AAHDLSVI--LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGY-GA-VPAIVPRV-----------------------SGV 54 (369)
Q Consensus 2 ~~~~~~~~--~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~-Ga-~~vivp~~-----------------------~~~ 54 (369)
+.+++... ..+|+|+... .+++...++.+.+. |. .++++.+. .+.
T Consensus 11 ~~~~~~~~~~~k~vlVTGat--------G~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~ 82 (344)
T 2gn4_A 11 SMPNHQNMLDNQTILITGGT--------GSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDL 82 (344)
T ss_dssp -----CCTTTTCEEEEETTT--------SHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTCH
T ss_pred CCccHHHhhCCCEEEEECCC--------cHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCCH
Confidence 44444443 2578887544 46777777777776 76 65554332 234
Q ss_pred hhhhhhcCCCCEEEECCCC
Q 017539 55 HMLLDSFEPIHGVLLCEGE 73 (369)
Q Consensus 55 ~~l~~~l~~~DGlll~GG~ 73 (369)
+.+.+.++.+|.||-..|.
T Consensus 83 ~~l~~~~~~~D~Vih~Aa~ 101 (344)
T 2gn4_A 83 ERLNYALEGVDICIHAAAL 101 (344)
T ss_dssp HHHHHHTTTCSEEEECCCC
T ss_pred HHHHHHHhcCCEEEECCCC
Confidence 5566677789999988774
No 215
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2
Probab=20.64 E-value=2e+02 Score=25.37 Aligned_cols=40 Identities=15% Similarity=0.025 Sum_probs=21.0
Q ss_pred CCCCCCCCC-CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEE
Q 017539 1 MAAHDLSVI-LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIV 48 (369)
Q Consensus 1 ~~~~~~~~~-~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~viv 48 (369)
|+.++|+.. ..+|+|+... ..++...++.+.+.|+.++++
T Consensus 22 ~~~~~m~~l~~k~vlVTGas--------ggIG~~la~~l~~~G~~V~~~ 62 (279)
T 1xg5_A 22 MARPGMERWRDRLALVTGAS--------GGIGAAVARALVQQGLKVVGC 62 (279)
T ss_dssp -CCTTCGGGTTCEEEEESTT--------SHHHHHHHHHHHHTTCEEEEE
T ss_pred cccccccccCCCEEEEECCC--------chHHHHHHHHHHHCCCEEEEE
Confidence 566676543 3466666433 245555555555555555443
No 216
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=20.18 E-value=2.2e+02 Score=21.61 Aligned_cols=54 Identities=17% Similarity=0.170 Sum_probs=29.2
Q ss_pred CCCCCcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhc---CCCCEEEEC
Q 017539 6 LSVILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSF---EPIHGVLLC 70 (369)
Q Consensus 6 ~~~~~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l---~~~DGlll~ 70 (369)
|+...++|+|+.... .......+.+...|..++... +.++..+.+ ..+|-||+-
T Consensus 1 M~~~~~~ilivdd~~--------~~~~~l~~~L~~~g~~v~~~~---~~~~a~~~l~~~~~~dlvi~D 57 (140)
T 3h5i_A 1 MSLKDKKILIVEDSK--------FQAKTIANILNKYGYTVEIAL---TGEAAVEKVSGGWYPDLILMD 57 (140)
T ss_dssp -----CEEEEECSCH--------HHHHHHHHHHHHTTCEEEEES---SHHHHHHHHHTTCCCSEEEEE
T ss_pred CCCCCcEEEEEeCCH--------HHHHHHHHHHHHcCCEEEEec---ChHHHHHHHhcCCCCCEEEEe
Confidence 344457899987653 223345567788898776543 333333333 257877774
No 217
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=20.10 E-value=1.1e+02 Score=28.26 Aligned_cols=36 Identities=8% Similarity=0.208 Sum_probs=26.6
Q ss_pred EEEEe-cCcccCcCcccccchhHHHHHHHHCCCEEEEEc
Q 017539 12 RVLIV-SRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVP 49 (369)
Q Consensus 12 ~IgIv-~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp 49 (369)
+|+|| +.+. ++.+...+.+.+++.+++.|..+.++.
T Consensus 24 KiLII~aHP~--~~S~n~aL~~~~~~~l~~~G~eV~v~D 60 (280)
T 4gi5_A 24 KVLLIYAHPE--PRSLNGALKNFAIRHLQQAGHEVQVSD 60 (280)
T ss_dssp EEEEEECCSC--TTSHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred eEEEEEeCCC--CccHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 56666 4442 455667788889999999999988774
No 218
>3hpd_A Hydroxyethylthiazole kinase; alpha-beta, ATP binding, transferase, ATP-binding, M metal-binding, nucleotide-binding, thiamine biosynthesis; 1.85A {Pyrococcus horikoshii}
Probab=20.05 E-value=2.3e+02 Score=25.83 Aligned_cols=51 Identities=18% Similarity=0.204 Sum_probs=32.9
Q ss_pred CcEEEEecCcccCcCcccccchhHHHHHHHHCCCEEEEEcCCCChhhhhhhcCCCCEEEECCC
Q 017539 10 LPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPAIVPRVSGVHMLLDSFEPIHGVLLCEG 72 (369)
Q Consensus 10 ~P~IgIv~~~~~~~~~~~~~v~~~~l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGlll~GG 72 (369)
.|.|-=+++... ...-.+.+...||.|++... +++..+.....|+++|--|
T Consensus 15 ~PLvh~iTN~V~---------~n~~AN~lLA~GasPiMa~~---~~E~~e~~~~a~al~iNiG 65 (265)
T 3hpd_A 15 RPLVHNITNFVV---------MNTTANALLALGASPVMAHA---EEELEEMIRLADAVVINIG 65 (265)
T ss_dssp CCEEEEECCTTT---------HHHHHHHHHHHTCEEEECCC---TTTHHHHHHHCSEEEEECT
T ss_pred CCcEEeccchhh---------HHHHHHHHHHhCCchhhcCC---HHHHHHHHHHCCeEEEECC
Confidence 466665555522 12234567889999999753 3455555566899999766
Done!