Query 017540
Match_columns 369
No_of_seqs 114 out of 1254
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 09:29:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017540.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017540hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02663 Peptidase_C19G A subfa 100.0 4.7E-62 1E-66 439.4 30.5 297 24-360 1-300 (300)
2 cd02668 Peptidase_C19L A subfa 100.0 1.7E-60 3.7E-65 433.9 28.3 302 24-360 1-324 (324)
3 KOG1865 Ubiquitin carboxyl-ter 100.0 5.2E-61 1.1E-65 434.3 20.5 302 19-362 105-410 (545)
4 cd02671 Peptidase_C19O A subfa 100.0 7E-59 1.5E-63 420.3 29.7 292 12-360 14-332 (332)
5 cd02664 Peptidase_C19H A subfa 100.0 6.2E-59 1.3E-63 423.3 27.8 282 24-360 1-327 (327)
6 cd02660 Peptidase_C19D A subfa 100.0 8.2E-59 1.8E-63 425.0 27.8 299 23-360 1-328 (328)
7 cd02657 Peptidase_C19A A subfa 100.0 1.1E-58 2.3E-63 419.8 28.1 293 24-360 1-305 (305)
8 cd02659 peptidase_C19C A subfa 100.0 1.9E-58 4.1E-63 423.6 27.9 306 21-363 1-333 (334)
9 cd02661 Peptidase_C19E A subfa 100.0 6.7E-58 1.5E-62 415.1 27.8 300 22-360 1-304 (304)
10 cd02658 Peptidase_C19B A subfa 100.0 3.1E-57 6.8E-62 411.2 25.2 280 24-360 1-311 (311)
11 cd02667 Peptidase_C19K A subfa 100.0 1.1E-56 2.4E-61 400.0 24.7 244 24-360 1-279 (279)
12 cd02669 Peptidase_C19M A subfa 100.0 7.5E-55 1.6E-59 409.5 26.5 285 20-360 117-440 (440)
13 COG5533 UBP5 Ubiquitin C-termi 100.0 2.8E-53 6.2E-58 355.2 15.6 327 20-362 69-414 (415)
14 COG5560 UBP12 Ubiquitin C-term 100.0 4.4E-53 9.6E-58 384.1 13.7 322 21-362 264-822 (823)
15 cd02662 Peptidase_C19F A subfa 100.0 1.6E-51 3.6E-56 358.2 22.6 212 24-360 1-240 (240)
16 KOG0944 Ubiquitin-specific pro 100.0 5.5E-49 1.2E-53 360.1 17.0 292 19-363 304-763 (763)
17 cd02674 Peptidase_C19R A subfa 100.0 2.3E-48 5E-53 338.3 18.7 217 24-360 1-230 (230)
18 PF00443 UCH: Ubiquitin carbox 100.0 3.2E-47 6.9E-52 338.7 23.9 256 22-359 1-269 (269)
19 KOG1866 Ubiquitin carboxyl-ter 100.0 7.6E-49 1.6E-53 361.7 7.6 311 22-367 95-439 (944)
20 cd02666 Peptidase_C19J A subfa 100.0 1.1E-46 2.3E-51 340.1 16.3 278 22-360 1-343 (343)
21 cd02665 Peptidase_C19I A subfa 100.0 2.6E-45 5.6E-50 310.7 17.6 225 24-360 1-228 (228)
22 KOG1868 Ubiquitin C-terminal h 100.0 1.4E-45 3E-50 349.4 14.3 331 18-364 297-648 (653)
23 COG5077 Ubiquitin carboxyl-ter 100.0 3.1E-45 6.7E-50 338.6 9.5 304 19-363 190-512 (1089)
24 cd02673 Peptidase_C19Q A subfa 100.0 4.8E-43 1.1E-47 303.0 19.5 239 25-360 2-245 (245)
25 cd02257 Peptidase_C19 Peptidas 100.0 1.4E-42 3.1E-47 305.6 21.5 238 24-360 1-255 (255)
26 KOG1867 Ubiquitin-specific pro 100.0 3.1E-43 6.7E-48 327.9 17.1 311 20-365 159-487 (492)
27 COG5207 UBP14 Isopeptidase T [ 100.0 1.9E-40 4.1E-45 294.9 16.6 291 22-362 303-749 (749)
28 KOG4598 Putative ubiquitin-spe 100.0 8.5E-42 1.9E-46 313.0 6.2 283 21-367 86-446 (1203)
29 KOG1873 Ubiquitin-specific pro 100.0 2.3E-40 5E-45 306.5 8.9 326 18-362 201-877 (877)
30 PF13423 UCH_1: Ubiquitin carb 100.0 2.1E-38 4.4E-43 284.8 21.2 277 23-329 1-295 (295)
31 cd02672 Peptidase_C19P A subfa 100.0 4.5E-39 9.7E-44 282.0 13.4 234 19-360 12-268 (268)
32 KOG1863 Ubiquitin carboxyl-ter 100.0 6.9E-39 1.5E-43 327.1 14.6 305 22-366 170-489 (1093)
33 KOG1870 Ubiquitin C-terminal h 100.0 7E-39 1.5E-43 319.5 13.3 328 15-363 239-842 (842)
34 KOG1864 Ubiquitin-specific pro 100.0 1.2E-37 2.6E-42 294.9 18.0 343 1-343 207-562 (587)
35 cd02670 Peptidase_C19N A subfa 100.0 5.8E-34 1.3E-38 243.5 14.5 173 109-360 22-241 (241)
36 KOG1872 Ubiquitin-specific pro 100.0 3.6E-34 7.7E-39 254.9 8.2 304 20-364 103-471 (473)
37 KOG1871 Ubiquitin-specific pro 100.0 9.6E-31 2.1E-35 227.1 14.6 330 20-363 26-420 (420)
38 KOG2026 Spindle pole body prot 100.0 7.6E-29 1.6E-33 214.4 12.2 287 13-362 127-441 (442)
39 KOG1275 PAB-dependent poly(A) 99.9 9.9E-25 2.1E-29 206.7 13.4 317 20-359 497-860 (1118)
40 PF15499 Peptidase_C98: Ubiqui 98.9 2.1E-08 4.5E-13 84.0 13.0 134 164-330 119-254 (275)
41 KOG1887 Ubiquitin carboxyl-ter 98.0 4.2E-07 9E-12 87.9 -3.1 222 108-362 547-790 (806)
42 KOG1864 Ubiquitin-specific pro 97.6 0.00014 3.1E-09 70.4 7.2 108 21-130 31-154 (587)
43 KOG3556 Familial cylindromatos 97.5 4.5E-05 9.8E-10 70.1 1.7 31 21-51 367-397 (724)
44 PF08715 Viral_protease: Papai 96.3 0.054 1.2E-06 48.6 10.9 72 25-124 105-177 (320)
45 PF05408 Peptidase_C28: Foot-a 96.2 0.0023 5E-08 51.3 1.4 35 296-334 130-164 (193)
46 PF05408 Peptidase_C28: Foot-a 88.9 1.1 2.4E-05 36.3 5.4 27 17-43 28-54 (193)
47 PF03292 Pox_P4B: Poxvirus P4B 75.6 6.9 0.00015 38.0 5.8 84 249-333 479-575 (666)
48 PF14353 CpXC: CpXC protein 73.3 4.3 9.3E-05 31.3 3.3 48 180-237 2-49 (128)
49 PF01473 CW_binding_1: Putativ 68.0 7.4 0.00016 18.7 2.3 15 313-327 2-16 (19)
50 PF02099 Josephin: Josephin; 66.2 20 0.00044 28.8 5.8 44 294-342 98-143 (157)
51 COG3478 Predicted nucleic-acid 65.2 6.7 0.00014 25.8 2.3 35 226-260 4-40 (68)
52 KOG1867 Ubiquitin-specific pro 56.3 3.2 6.9E-05 40.1 -0.4 104 20-125 75-181 (492)
53 KOG1871 Ubiquitin-specific pro 48.4 10 0.00022 34.8 1.5 32 22-53 178-209 (420)
54 PF13002 LDB19: Arrestin_N ter 46.9 49 0.0011 27.4 5.0 66 227-301 23-88 (191)
55 cd02418 Peptidase_C39B A sub-f 46.6 1.3E+02 0.0028 22.8 7.7 34 306-339 87-122 (136)
56 KOG2691 RNA polymerase II subu 46.4 35 0.00076 25.1 3.6 57 180-236 27-83 (113)
57 cd02420 Peptidase_C39D A sub-f 39.3 1.3E+02 0.0027 22.5 6.3 32 308-339 83-116 (125)
58 PF03412 Peptidase_C39: Peptid 38.2 1.2E+02 0.0027 22.8 6.1 45 307-362 83-129 (131)
59 PF09855 DUF2082: Nucleic-acid 38.2 32 0.0007 22.9 2.3 15 227-241 1-15 (64)
60 smart00460 TGc Transglutaminas 34.6 57 0.0012 21.3 3.2 20 306-325 46-65 (68)
61 PF10264 Stork_head: Winged he 32.8 1.7E+02 0.0038 20.5 5.3 51 67-120 11-61 (80)
62 PF11164 DUF2948: Protein of u 32.8 2.4E+02 0.0053 22.1 6.7 72 243-315 29-106 (138)
63 cd01269 PLX Pollux (PLX) Phosp 32.3 1.9E+02 0.0042 22.1 5.8 31 287-317 77-107 (129)
64 TIGR00373 conserved hypothetic 31.5 1.6E+02 0.0036 23.6 5.9 20 112-131 78-97 (158)
65 KOG2906 RNA polymerase III sub 30.8 1.2E+02 0.0026 22.1 4.2 68 176-246 18-85 (105)
66 KOG2757 Mannose-6-phosphate is 29.9 1.1E+02 0.0023 28.3 4.8 83 34-119 146-230 (411)
67 PRK09750 hypothetical protein; 28.7 1.7E+02 0.0037 19.0 4.5 38 291-343 2-39 (64)
68 PF14690 zf-ISL3: zinc-finger 28.3 88 0.0019 18.8 3.0 33 227-259 3-43 (47)
69 cd02425 Peptidase_C39F A sub-f 26.7 2.3E+02 0.005 21.0 5.9 31 309-339 85-117 (126)
70 PF13499 EF-hand_7: EF-hand do 26.6 1.2E+02 0.0025 19.6 3.7 49 71-124 1-49 (66)
71 PF10748 DUF2531: Protein of u 25.5 98 0.0021 24.0 3.4 34 290-329 33-67 (132)
72 KOG2935 Ataxin 3/Josephin [Gen 25.3 8.9 0.00019 32.8 -2.4 58 296-364 104-163 (315)
73 PF13405 EF-hand_6: EF-hand do 24.9 1.1E+02 0.0024 16.4 2.7 27 71-99 1-27 (31)
74 cd02419 Peptidase_C39C A sub-f 23.7 3.1E+02 0.0067 20.4 6.7 32 308-339 83-116 (127)
75 cd05029 S-100A6 S-100A6: S-100 23.5 2.5E+02 0.0053 19.9 5.0 32 69-100 9-40 (88)
76 PF12252 SidE: Dot/Icm substra 23.4 78 0.0017 33.4 3.1 35 289-327 47-82 (1439)
77 PRK06266 transcription initiat 23.4 3E+02 0.0066 22.6 6.2 10 226-235 136-145 (178)
78 PF01088 Peptidase_C12: Ubiqui 22.6 1E+02 0.0022 26.2 3.4 25 309-333 166-190 (214)
79 KOG3911 Nucleolar protein NOP5 21.9 3.1E+02 0.0067 25.0 6.1 59 63-127 44-103 (378)
80 KOG2463 Predicted RNA-binding 21.5 1.1E+02 0.0024 27.7 3.3 37 226-263 257-294 (376)
81 COG0093 RplN Ribosomal protein 21.5 1.6E+02 0.0035 22.3 3.7 34 294-335 57-90 (122)
82 cd02549 Peptidase_C39A A sub-f 20.6 3.8E+02 0.0082 20.3 6.1 37 306-342 91-131 (141)
83 PF05997 Nop52: Nucleolar prot 20.4 5E+02 0.011 22.1 7.1 59 64-127 36-94 (217)
No 1
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.7e-62 Score=439.38 Aligned_cols=297 Identities=69% Similarity=1.160 Sum_probs=262.1
Q ss_pred ccccCCchhhhhHHHHHhhCChhHHHHHHhhhccCCCCCcchhhHHHHHHHHHHHHHhcccCCCccChHHHHHHHHhhcc
Q 017540 24 GLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQNE 103 (369)
Q Consensus 24 GL~N~gntCy~NsvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 103 (369)
||.|+||||||||+||+|++ .+++.+|+.||.+|+........++|..|+.++....+
T Consensus 1 Gl~NlGnTCY~NsvLQ~L~~----------------------~~l~~~L~~lf~~l~~~~~~~~~isP~~f~~~l~~~~~ 58 (300)
T cd02663 1 GLENFGNTCYCNSVLQALYF----------------------ENLLTCLKDLFESISEQKKRTGVISPKKFITRLKRENE 58 (300)
T ss_pred CccCCCcceehhHHHHHhhh----------------------HHHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHHhhcC
Confidence 89999999999999999987 45888999999999998766677999999999999889
Q ss_pred ccCCCCCChHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCcCCCCCCCCCCCCCcCCccccccccccceeEeeeeeec
Q 017540 104 LFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCL 183 (369)
Q Consensus 104 ~~~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lF~~~~~~~~~C~ 183 (369)
.|..+.||||+|||..||+.|++++............ ...........++|.++|.|.+...++|.
T Consensus 59 ~f~~~~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~i~~~F~G~~~~~~~C~ 124 (300)
T cd02663 59 LFDNYMHQDAHEFLNFLLNEIAEILDAERKAEKANRK--------------LNNNNNAEPQPTWVHEIFQGILTNETRCL 124 (300)
T ss_pred CCCCCccccHHHHHHHHHHHHHHHHHHHhhccccccc--------------ccccccCCcCCCChhhhCceEEEeeEEeC
Confidence 9999999999999999999999999876443221100 00111222345789999999999999999
Q ss_pred CCCCccccccceeecCcccccCccHHHHHHhcCccceecCCCcccccccCCcceeeEEEecccCCceEEEEeeeeeeecc
Q 017540 184 RCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQ 263 (369)
Q Consensus 184 ~C~~~~~~~~~~~~l~l~i~~~~~l~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~~L~i~l~R~~~~~~ 263 (369)
.|+..+...++|..|+|+++...+|+++|+.++.+|.+.+++.+.|++|+....+.++..|.++|++|+|+|+||.++..
T Consensus 125 ~C~~~s~~~e~f~~Lsl~i~~~~sl~~~L~~~~~~E~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~ 204 (300)
T cd02663 125 TCETVSSRDETFLDLSIDVEQNTSITSCLRQFSATETLCGRNKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYDEQ 204 (300)
T ss_pred CCCCCccccceeEEeccCCCCcCCHHHHHHHhhcccccCCCCcEECCCCCCceeEEEEEEeccCCceeEEEEEeEEeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred ccccccccceeecCcccccCCCCC---CCCceEEEEEEEEeecCCCCCccEEEEEeeCCcEEEEeCCcceeeChhhHHhh
Q 017540 264 LGRYKKLSYRVVFPLELKLSNTAE---DADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTF 340 (369)
Q Consensus 264 ~~~~~K~~~~v~~p~~l~l~~~~~---~~~~~Y~L~~vi~H~G~~~~~GHY~~~vr~~~~W~~~nD~~V~~v~~~~v~~~ 340 (369)
.+...|+...|.||..|++..+.+ .....|+|+|||+|.|.+.++|||+||+|.+++|++|||+.|+++++++|.+.
T Consensus 205 ~~~~~Ki~~~v~fp~~L~~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~a~~k~~~~W~~fdD~~V~~~~~~~v~~~ 284 (300)
T cd02663 205 LNRYIKLFYRVVFPLELRLFNTTDDAENPDRLYELVAVVVHIGGGPNHGHYVSIVKSHGGWLLFDDETVEKIDENAVEEF 284 (300)
T ss_pred cCCceecCceEecCcEEeccccccccCCCCeEEEEEEEEEEecCCCCCCceEEEEECCCcEEEEcCCceEEcCHHHHHHh
Confidence 667899999999999999987642 35679999999999998789999999999999999999999999999999987
Q ss_pred hcCcccCCCCCCceEEEEEE
Q 017540 341 FGSAQEYSSNTDHGYILFYE 360 (369)
Q Consensus 341 ~~~~~~~~~~~~~~y~l~Y~ 360 (369)
+++. ....+||||||+
T Consensus 285 ~~~~----~~~~~aYiLfY~ 300 (300)
T cd02663 285 FGDS----PNQATAYVLFYQ 300 (300)
T ss_pred cCCC----CCCCceEEEEeC
Confidence 6542 237899999996
No 2
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.7e-60 Score=433.86 Aligned_cols=302 Identities=27% Similarity=0.544 Sum_probs=260.8
Q ss_pred ccccCCchhhhhHHHHHhhCChhHHHHHHhhhccCCC--------CCcchhhHHHHHHHHHHHHHhcccCCCccChHHHH
Q 017540 24 GLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKN--------LGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFV 95 (369)
Q Consensus 24 GL~N~gntCy~NsvLQ~L~~~p~f~~~l~~~~~~~~~--------~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~ 95 (369)
||.|+||||||||+||+|+++|+|++.++........ ......+++.+|+.||.+|+.+... .++|..|.
T Consensus 1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~~~~--~i~p~~f~ 78 (324)
T cd02668 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFGNRS--VVDPSGFV 78 (324)
T ss_pred CcccCCceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhCCCc--eEChHHHH
Confidence 8999999999999999999999999999976432210 0012357999999999999987543 49999999
Q ss_pred HHHHhhccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCcCCCCCCCCCCCCCcCCcccccccccccee
Q 017540 96 QRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGI 175 (369)
Q Consensus 96 ~~l~~~~~~~~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lF~~~ 175 (369)
..+. +..++||||+||+..||+.|++++..... ....+++.++|.|.
T Consensus 79 ~~l~-----~~~~~QqDa~EFl~~lLd~L~~~l~~~~~----------------------------~~~~~~i~~~F~G~ 125 (324)
T cd02668 79 KALG-----LDTGQQQDAQEFSKLFLSLLEAKLSKSKN----------------------------PDLKNIVQDLFRGE 125 (324)
T ss_pred HHhC-----CCCccccCHHHHHHHHHHHHHHHHhhccC----------------------------CcccchhhhhcceE
Confidence 8884 66789999999999999999988754210 11336799999999
Q ss_pred EeeeeeecCCCCccccccceeecCcccccCccHHHHHHhcCccceecCCCcccccccCCcceeeEEEecccCCceEEEEe
Q 017540 176 LTNETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHL 255 (369)
Q Consensus 176 ~~~~~~C~~C~~~~~~~~~~~~l~l~i~~~~~l~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~~L~i~l 255 (369)
+...+.|..|+..+...++|..|+|+++...+|+++|+.++.++.++|++.+.|++|+.+..+.++..|.++|++|+|+|
T Consensus 126 ~~~~~~C~~C~~~s~~~e~f~~l~l~i~~~~sl~~~L~~~~~~e~l~g~~~~~C~~C~~~~~a~k~~~i~~lP~iLii~L 205 (324)
T cd02668 126 YSYVTQCSKCGRESSLPSKFYELELQLKGHKTLEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRIRLTTLPPTLNFQL 205 (324)
T ss_pred EEEEEEeCCCCCccccccccEEEEEEecccCCHHHHHHHhhCceecCCCccccCCCCCceeeeEEEEEecCCCCeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeccccccccccceeecCcccccCCCCCC---CCceEEEEEEEEeecCCCCCccEEEEEee--CCcEEEEeCCcce
Q 017540 256 KRFKYIEQLGRYKKLSYRVVFPLELKLSNTAED---ADIEYSLFAVVVHVGSGPNHGHYVSLVKS--HNHWLFFDDENVE 330 (369)
Q Consensus 256 ~R~~~~~~~~~~~K~~~~v~~p~~l~l~~~~~~---~~~~Y~L~~vi~H~G~~~~~GHY~~~vr~--~~~W~~~nD~~V~ 330 (369)
+||.++..++...|+...|.||..|||..++.. ...+|+|+|||+|.|.+.++|||+||+|+ +++|++|||+.|+
T Consensus 206 kRf~~d~~~~~~~Ki~~~v~fp~~Ldl~~~~~~~~~~~~~Y~L~~vI~H~G~~~~~GHY~~~~k~~~~~~W~~fdD~~V~ 285 (324)
T cd02668 206 LRFVFDRKTGAKKKLNASISFPEILDMGEYLAESDEGSYVYELSGVLIHQGVSAYSGHYIAHIKDEQTGEWYKFNDEDVE 285 (324)
T ss_pred EcceeecccCcceeCCcEEECCCeEechhhcccccCCCcEEEEEEEEEEcCCCCCCEeeEEEEECCCCCcEEEEECCceE
Confidence 999999887888999999999999999998743 57799999999999987899999999997 4899999999999
Q ss_pred eeChhhHHhhhcCcc---------cCCCCCCceEEEEEE
Q 017540 331 MIDESAVQTFFGSAQ---------EYSSNTDHGYILFYE 360 (369)
Q Consensus 331 ~v~~~~v~~~~~~~~---------~~~~~~~~~y~l~Y~ 360 (369)
+++++.|.+..+... .......+||||||+
T Consensus 286 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~y~ 324 (324)
T cd02668 286 EMPGKPLKLGNSEDPAKPRKSEIKKGTHSSRTAYMLVYK 324 (324)
T ss_pred EcCHHHhhcccccccccccccccCCCccccCceEEEEeC
Confidence 999999976443111 001347899999996
No 3
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-61 Score=434.28 Aligned_cols=302 Identities=31% Similarity=0.551 Sum_probs=270.1
Q ss_pred CCCccccccCCchhhhhHHHHHhhCChhHHHHHHhhhccCCCCCcchhhHHHHHHHHHHHHHhcccCCCccChHHHHHHH
Q 017540 19 GERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRL 98 (369)
Q Consensus 19 ~~~~~GL~N~gntCy~NsvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~l 98 (369)
...++||+|.|||||+|||||||.++|++.++|+...+. ..+.....|++++|+..+..-...... ++.|..|+..|
T Consensus 105 ~~~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs-~~C~~~~~C~lc~~q~hi~~A~~~~g~--pisP~~i~s~L 181 (545)
T KOG1865|consen 105 AAVGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHS-RSCHRAKFCMLCTFQAHITRALHNPGH--PISPSQILSNL 181 (545)
T ss_pred ccCCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhh-hhccccCeeeehHHHHHHHHHhcCCCC--ccChHHHHHhh
Confidence 345899999999999999999999999999999986433 234457789999999988766665443 49999999999
Q ss_pred HhhccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCcCCCCCCCCCCCCCcCCccccccccccceeEee
Q 017540 99 KKQNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTN 178 (369)
Q Consensus 99 ~~~~~~~~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lF~~~~~~ 178 (369)
..+...|..+.|+||+|||+++++.|....-.... ...-..+...+++.+|+|-+.+
T Consensus 182 ~~I~~~f~~grQEDAHEFLr~~vd~mqk~cL~g~~-----------------------~~~~~sq~ttlv~~iFGG~LrS 238 (545)
T KOG1865|consen 182 RNISAHFGRGRQEDAHEFLRFTVDAMQKACLPGHK-----------------------QVDPRSQDTTLVHQIFGGYLRS 238 (545)
T ss_pred hhhcccccCCchhhHHHHHHHHHHHHHHhhcCCCc-----------------------cCCcccccceehhhhhccchhh
Confidence 99999999999999999999999999876431100 0111123457899999999999
Q ss_pred eeeecCCCCccccccceeecCcccccCccHHHHHHhcCccceecCCCcccccccCCcceeeEEEecccCCceEEEEeeee
Q 017540 179 ETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRF 258 (369)
Q Consensus 179 ~~~C~~C~~~~~~~~~~~~l~l~i~~~~~l~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~~L~i~l~R~ 258 (369)
.++|..|.+++...|+.+.|+|+|....+|.++|+.|...|.++|++.|.|++|.++..+.++.+|.++|+||+|+|+||
T Consensus 239 ~vkC~~C~~vS~tyE~~~dltvei~d~~sl~~AL~qFt~~E~L~gen~Y~C~~Ck~~v~A~K~lti~raPnVLTi~LKRF 318 (545)
T KOG1865|consen 239 QIKCLHCKGVSDTYEPYLDLTLEIQDASSLQQALEQFTKPEKLDGENAYHCGRCKQKVPASKQLTIHRAPNVLTLHLKRF 318 (545)
T ss_pred ceecccCCCcccccccccceEEEeccchhHHHHHHHhhhHHhhCCccccccchhhhhCcccceeeeecCCceEEEeeehh
Confidence 99999999999999999999999998899999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccccccccceeecCcccccCCCCC---CCCceEEEEEEEEeecCCCCCccEEEEEee-CCcEEEEeCCcceeeCh
Q 017540 259 KYIEQLGRYKKLSYRVVFPLELKLSNTAE---DADIEYSLFAVVVHVGSGPNHGHYVSLVKS-HNHWLFFDDENVEMIDE 334 (369)
Q Consensus 259 ~~~~~~~~~~K~~~~v~~p~~l~l~~~~~---~~~~~Y~L~~vi~H~G~~~~~GHY~~~vr~-~~~W~~~nD~~V~~v~~ 334 (369)
++ +...|+.+.|.||+.|||..|+. +...+|.|+|||+|.|.+...|||++|||. +|.||.+||+.|+.++.
T Consensus 319 ~~----~~~gKI~K~I~fPE~LDl~PyMS~~~e~s~~Y~LYavlVH~g~~~~~GHY~cYvks~~g~Wy~~DDS~V~~~~~ 394 (545)
T KOG1865|consen 319 SN----GTGGKISKPVSFPETLDLQPYMSQPNEGSTVYKLYAVLVHLGTSCHSGHYFCYVKSQNGQWYKMDDSEVTQSSI 394 (545)
T ss_pred cc----CcccccccccCCcccccccccccCCCCCCceEEEEEEEEeccccccCCceEEEEEcCCCceEEccCceeeeccc
Confidence 97 56799999999999999999997 368899999999999999999999999999 88999999999999999
Q ss_pred hhHHhhhcCcccCCCCCCceEEEEEEEe
Q 017540 335 SAVQTFFGSAQEYSSNTDHGYILFYESL 362 (369)
Q Consensus 335 ~~v~~~~~~~~~~~~~~~~~y~l~Y~r~ 362 (369)
+.|+ ...||||||.|.
T Consensus 395 ~~VL------------sq~AYmLfY~R~ 410 (545)
T KOG1865|consen 395 ESVL------------SQQAYILFYARK 410 (545)
T ss_pred ccee------------cccceEEEEEee
Confidence 9999 899999999997
No 4
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=7e-59 Score=420.32 Aligned_cols=292 Identities=34% Similarity=0.628 Sum_probs=247.0
Q ss_pred hcCCCCCCCCccccccCCchhhhhHHHHHhhCChhHHHHHHhhhccCCCCCcchhhHHHHHHHHH---HHHHhcccCCCc
Q 017540 12 LGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLF---TQIRAQKKKTGV 88 (369)
Q Consensus 12 ~~~~~~~~~~~~GL~N~gntCy~NsvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~l~---~~l~~~~~~~~~ 88 (369)
-++..+-.++++||.|+||||||||+||+|+++|+||+.+....... .....++.++ ..++.... ..
T Consensus 14 ~~~~~~~~~~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~--------~~~~~~q~~~~~l~~~~~~~~--~~ 83 (332)
T cd02671 14 SCEKRENLLPFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSLI--------SSVEQLQSSFLLNPEKYNDEL--AN 83 (332)
T ss_pred cccccccCCCCcceeccCceEeHHHHHHHHHcChHHHHHHHhhhccc--------CcHHHHHHHHHHHHHHHhhcc--cc
Confidence 35566666779999999999999999999999999999998753110 0111222222 33333222 23
Q ss_pred cChHHHHHHHHhhccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCcCCCCCCCCCCCCCcCCcccccc
Q 017540 89 IAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWV 168 (369)
Q Consensus 89 ~~~~~~~~~l~~~~~~~~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 168 (369)
..|..|+..++...+.|..+.||||+|||..||+.|+. .+
T Consensus 84 ~~P~~~~~~l~~~~~~f~~~~QQDA~EFl~~LLd~L~~----------------------------------------~i 123 (332)
T cd02671 84 QAPRRLLNALREVNPMYEGYLQHDAQEVLQCILGNIQE----------------------------------------LV 123 (332)
T ss_pred cCHHHHHHHHHHhccccCCccccCHHHHHHHHHHHHHH----------------------------------------HH
Confidence 67999999999989999999999999999999999974 26
Q ss_pred ccccceeEeeeeeecCCCCccccccceeecCcccccC-------------------ccHHHHHHhcCccceecCCCcccc
Q 017540 169 HKNFQGILTNETRCLRCETVTARDETFFDLSLDIEQN-------------------SSITSCLKNFSSTETLNAEDKFFC 229 (369)
Q Consensus 169 ~~lF~~~~~~~~~C~~C~~~~~~~~~~~~l~l~i~~~-------------------~~l~~~L~~~~~~e~~~~~~~~~C 229 (369)
.++|+|.+...++|.+|++.+...++|..|+|+++.. .+|+++|+.|+.+|.+.|++.+.|
T Consensus 124 ~~~F~g~~~~~~~C~~C~~~s~~~E~f~~lsL~i~~~~~~~~~~~~~~~~~~~~~~~tL~~~L~~f~~~E~l~g~n~y~C 203 (332)
T cd02671 124 EKDFQGQLVLRTRCLECETFTERREDFQDISVPVQESELSKSEESSEISPDPKTEMKTLKWAISQFASVERIVGEDKYFC 203 (332)
T ss_pred HhhhceEEEEEEEeCCCCCeeceecccEEEEEEeCCCcccccccccccccccccccCCHHHHHHHhCCcceecCCCCeeC
Confidence 7889999999999999999999999999999999854 489999999999999999999999
Q ss_pred cccCCcceeeEEEecccCCceEEEEeeeeeeeccc----cccccccceeecCcccccCCCCCC-CCceEEEEEEEEeecC
Q 017540 230 DKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQL----GRYKKLSYRVVFPLELKLSNTAED-ADIEYSLFAVVVHVGS 304 (369)
Q Consensus 230 ~~C~~~~~~~~~~~i~~~P~~L~i~l~R~~~~~~~----~~~~K~~~~v~~p~~l~l~~~~~~-~~~~Y~L~~vi~H~G~ 304 (369)
++|+....+.++..|.++|++|+|+|+||.++... +...|+...|.||..|++..+... ....|+|+|||+|.|.
T Consensus 204 ~~C~~~~~a~k~~~~~~~P~vL~i~LkRF~~~~~~~~~~~~~~Ki~~~v~fp~~L~~~~~~~~~~~~~Y~L~~VI~H~G~ 283 (332)
T cd02671 204 ENCHHYTEAERSLLFDKLPEVITIHLKCFAANGSEFDCYGGLSKVNTPLLTPLKLSLEEWSTKPKNDVYRLFAVVMHSGA 283 (332)
T ss_pred CCCCCceeEEEEEEEecCCCEEEEEeeeeccccccccccCCceecCccccCccccccccccCCCCCCeEEEEEEEEEcCC
Confidence 99999999999999999999999999999976421 457899999999999999887644 4689999999999998
Q ss_pred CCCCccEEEEEeeCCcEEEEeCCcceeeChhhHHhhhcCcccCCCCCCceEEEEEE
Q 017540 305 GPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYE 360 (369)
Q Consensus 305 ~~~~GHY~~~vr~~~~W~~~nD~~V~~v~~~~v~~~~~~~~~~~~~~~~~y~l~Y~ 360 (369)
+.++|||+||+| |++|||+.|++++++++.+...++... ..+||||||+
T Consensus 284 ~~~~GHY~a~vr----W~~fdD~~V~~~~~~~~~~~~~~~~~~---~~~aYiLfY~ 332 (332)
T cd02671 284 TISSGHYTAYVR----WLLFDDSEVKVTEEKDFLEALSPNTSS---TSTPYLLFYK 332 (332)
T ss_pred CCCCCeEEEEEE----EEEEcCcceEEccHHHHHhhcCCCCCC---CCceEEEEEC
Confidence 789999999999 999999999999999998764443332 7899999995
No 5
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.2e-59 Score=423.26 Aligned_cols=282 Identities=35% Similarity=0.618 Sum_probs=245.6
Q ss_pred ccccCCchhhhhHHHHHhhCChhHHHHHHhhhccCCCCCcchhhHHHHHHHHHHHHHhcccCCCccChHH-HHHHHHhhc
Q 017540 24 GLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKR-FVQRLKKQN 102 (369)
Q Consensus 24 GL~N~gntCy~NsvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~-~~~~l~~~~ 102 (369)
||.|+||||||||+||+|+++|+||+++++..... ......++.+|+.+|..|....... +.+.. ++..+. .
T Consensus 1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~~---~~~~~~~~~~L~~lf~~l~~~~~~~--~~~~~~~l~~~~--~ 73 (327)
T cd02664 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPR---LGDSQSVMKKLQLLQAHLMHTQRRA--EAPPDYFLEASR--P 73 (327)
T ss_pred CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCccc---cCCcchHHHHHHHHHHHHhhcCCcc--cCCHHHHHHHhc--c
Confidence 89999999999999999999999999999864321 1234567889999999888654433 55555 555443 4
Q ss_pred cccCCCCCChHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCcCCCCCCCCCCCCCcCCccccccccccceeEeeeeee
Q 017540 103 ELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRC 182 (369)
Q Consensus 103 ~~~~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lF~~~~~~~~~C 182 (369)
+.|..+.||||+||+..||+.|+. +|.++|.|.+...++|
T Consensus 74 ~~f~~~~QqDa~EFl~~lLd~l~~----------------------------------------~i~~~F~G~~~~~i~C 113 (327)
T cd02664 74 PWFTPGSQQDCSEYLRYLLDRLHT----------------------------------------LIEKMFGGKLSTTIRC 113 (327)
T ss_pred cccCCCCcCCHHHHHHHHHHHHHH----------------------------------------HHHhhCcEEeEeEEEc
Confidence 568889999999999999999972 2788999999999999
Q ss_pred cCCCCccccccceeecCcccccCccHHHHHHhcCccceecCCCcccccccCCcceeeEEEecccCCceEEEEeeeeeeec
Q 017540 183 LRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIE 262 (369)
Q Consensus 183 ~~C~~~~~~~~~~~~l~l~i~~~~~l~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~~L~i~l~R~~~~~ 262 (369)
..|+..+...+++..|+|++| +++++|+.++.+|.++|++.+.|++|++...+.++..|.++|++|+|+|+||.++.
T Consensus 114 ~~C~~~s~~~e~f~~l~L~i~---sl~~~l~~~~~~E~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~ 190 (327)
T cd02664 114 LNCNSTSARTERFRDLDLSFP---SVQDLLNYFLSPEKLTGDNQYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSYDQ 190 (327)
T ss_pred CCCCCEecccccceeeecCCC---CHHHHHHHhcCeeEccCCCceeCCccCCccceeEEEEcccCChhhEEEeeeeEEcc
Confidence 999999999999999999998 89999999999999999999999999999999999999999999999999999998
Q ss_pred cccccccccceeecCcccccCCCCC----------------------CCCceEEEEEEEEeecCCCCCccEEEEEee-C-
Q 017540 263 QLGRYKKLSYRVVFPLELKLSNTAE----------------------DADIEYSLFAVVVHVGSGPNHGHYVSLVKS-H- 318 (369)
Q Consensus 263 ~~~~~~K~~~~v~~p~~l~l~~~~~----------------------~~~~~Y~L~~vi~H~G~~~~~GHY~~~vr~-~- 318 (369)
.++...|+...|.||..|||..+.. .....|+|.|||+|.|.++++|||+||+|. .
T Consensus 191 ~~~~~~Ki~~~v~fp~~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~Vi~H~G~~~~~GHY~a~~r~~~~ 270 (327)
T cd02664 191 KTHVREKIMDNVSINEVLSLPVRVESKSSESPLEKKEEESGDDGELVTRQVHYRLYAVVVHSGYSSESGHYFTYARDQTD 270 (327)
T ss_pred ccCcceecCceEecCCEEecCccccccccccccccccccccccccccCCCceEEEEEEEEEccCCCCCcceEEEEecCCc
Confidence 8788899999999999999988752 236789999999999987899999999997 3
Q ss_pred --------------------CcEEEEeCCcceeeChhhHHhhhcCcccCCCCCCceEEEEEE
Q 017540 319 --------------------NHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYE 360 (369)
Q Consensus 319 --------------------~~W~~~nD~~V~~v~~~~v~~~~~~~~~~~~~~~~~y~l~Y~ 360 (369)
++|++|||+.|+++++++|....+++ .+.+||||||+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~~~~~~v~~~~~~~-----~~~~aYlLfY~ 327 (327)
T cd02664 271 ADSTGQECPEPKDAEENDESKNWYLFNDSRVTFSSFESVQNVTSRF-----PKDTPYILFYE 327 (327)
T ss_pred cccccccccccccccccCCCCCEEEEeCCceEECCHHHHHHhhCCC-----CCCCEEEEEeC
Confidence 68999999999999999998654332 26899999995
No 6
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=8.2e-59 Score=424.96 Aligned_cols=299 Identities=32% Similarity=0.550 Sum_probs=259.1
Q ss_pred cccccCCchhhhhHHHHHhhCChhHHHHHHhhhccC-CCCCcchhhHHHHHHHHHHHHHhcccCCCccChHHHHHHHHhh
Q 017540 23 FGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNN-KNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQ 101 (369)
Q Consensus 23 ~GL~N~gntCy~NsvLQ~L~~~p~f~~~l~~~~~~~-~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~l~~~ 101 (369)
+||.|+||||||||+||+|+++|+|+++++...... ........++.++|..||..|+.... ...+.|..++..+...
T Consensus 1 rGl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~-~~~~~~~~~l~~~~~~ 79 (328)
T cd02660 1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSCLSCAMDEIFQEFYYSGD-RSPYGPINLLYLSWKH 79 (328)
T ss_pred CCccccCcchHHHHHHHHHhcCHHHHHHHhcCccccccccCCccccHHHHHHHHHHHHhcCCC-CCCcCHHHHHHHHHhh
Confidence 599999999999999999999999999999853221 11234456899999999999965433 2348899999999887
Q ss_pred ccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCcCCCCCCCCCCCCCcCCccccccccccceeEeeeee
Q 017540 102 NELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETR 181 (369)
Q Consensus 102 ~~~~~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lF~~~~~~~~~ 181 (369)
.+.|..+.||||+||+.+||+.|+++........ .......++|.++|.|.+...++
T Consensus 80 ~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~-----------------------~~~~~~~~~i~~~F~g~~~~~~~ 136 (328)
T cd02660 80 SRNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNEA-----------------------NDESHCNCIIHQTFSGSLQSSVT 136 (328)
T ss_pred chhhcccccccHHHHHHHHHHHHHHHhhcccccc-----------------------cccccCCceeEEecccEEEeeeE
Confidence 7889999999999999999999999876532210 01112457899999999999999
Q ss_pred ecCCCCccccccceeecCcccccC---------------ccHHHHHHhcCccceecCCCcccccccCCcceeeEEEeccc
Q 017540 182 CLRCETVTARDETFFDLSLDIEQN---------------SSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKK 246 (369)
Q Consensus 182 C~~C~~~~~~~~~~~~l~l~i~~~---------------~~l~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~ 246 (369)
|..|++.+...+++..|+|+++.. .+|+++|+.++.++.+.+.+ +.|++|+....+.++..|.+
T Consensus 137 C~~C~~~s~~~e~f~~lsl~i~~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~~~~~~-~~C~~C~~~~~~~~~~~i~~ 215 (328)
T cd02660 137 CQRCGGVSTTVDPFLDLSLDIPNKSTPSWALGESGVSGTPTLSDCLDRFTRPEKLGDFA-YKCSGCGSTQEATKQLSIKK 215 (328)
T ss_pred cCCCCCccceecccceeeeeccccccccccccccCCCCCCCHHHHHHHhcCccccCCCC-ccCCCCCCccceEEEEEecC
Confidence 999999999999999999999875 79999999999999998766 89999999999999999999
Q ss_pred CCceEEEEeeeeeeeccccccccccceeecCcccccCCCCC------------CCCceEEEEEEEEeecCCCCCccEEEE
Q 017540 247 SPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTAE------------DADIEYSLFAVVVHVGSGPNHGHYVSL 314 (369)
Q Consensus 247 ~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~p~~l~l~~~~~------------~~~~~Y~L~~vi~H~G~~~~~GHY~~~ 314 (369)
+|++|+|+|+||.++.. +...|+...|.||..|||..++. ....+|+|+|||.|.|+ .++|||++|
T Consensus 216 lP~~Lii~lkRf~~~~~-~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~-~~~GHY~~~ 293 (328)
T cd02660 216 LPPVLCFQLKRFEHSLN-KTSRKIDTYVQFPLELNMTPYTSSSIGDTQDSNSLDPDYTYDLFAVVVHKGT-LDTGHYTAY 293 (328)
T ss_pred CCceeEEEEEeEEecCC-CCCcCCCcEEeCCCEechhhhcccccccccccccCCCCceEEEEEEEEeecc-CCCCcEEEE
Confidence 99999999999998875 56789999999999999999765 25789999999999998 789999999
Q ss_pred EeeC-CcEEEEeCCcceeeChhhHHhhhcCcccCCCCCCceEEEEEE
Q 017540 315 VKSH-NHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYE 360 (369)
Q Consensus 315 vr~~-~~W~~~nD~~V~~v~~~~v~~~~~~~~~~~~~~~~~y~l~Y~ 360 (369)
+|.. ++|++|||+.|+++++++|. ..+||||||.
T Consensus 294 ~~~~~~~W~~~nD~~V~~~~~~~v~------------~~~ayil~Y~ 328 (328)
T cd02660 294 CRQGDGQWFKFDDAMITRVSEEEVL------------KSQAYLLFYH 328 (328)
T ss_pred EECCCCcEEEEECCeeEECCHHHhc------------CCCcEEEEeC
Confidence 9995 99999999999999999998 6899999994
No 7
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.1e-58 Score=419.81 Aligned_cols=293 Identities=27% Similarity=0.444 Sum_probs=255.5
Q ss_pred ccccCCchhhhhHHHHHhhCChhHHHHHHhhhccCCCCCcchhhHHHHHHHHHHHHHhcccCCCccChHHHHHHHHhhcc
Q 017540 24 GLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQNE 103 (369)
Q Consensus 24 GL~N~gntCy~NsvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 103 (369)
||.|+||||||||+||+|+++|+|+++++..............+++++|+.||..|+.... .++|..|+..+....+
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~---~i~p~~~~~~l~~~~~ 77 (305)
T cd02657 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARRGANQSSDNLTNALRDLFDTMDKKQE---PVPPIEFLQLLRMAFP 77 (305)
T ss_pred CcccccchhHHHHHHHHHhCCHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhCCC---cCCcHHHHHHHHHHCc
Confidence 8999999999999999999999999999986443222334566899999999999988653 4899999999988777
Q ss_pred ccC------CCCCChHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCcCCCCCCCCCCCCCcCCccccccccccceeEe
Q 017540 104 LFR------SYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILT 177 (369)
Q Consensus 104 ~~~------~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lF~~~~~ 177 (369)
.|. .++||||+||+..+|+.|++++... ....+.|.++|.|.+.
T Consensus 78 ~f~~~~~~~~~~QqDA~EFl~~lld~L~~~~~~~------------------------------~~~~~~i~~~F~g~~~ 127 (305)
T cd02657 78 QFAEKQNQGGYAQQDAEECWSQLLSVLSQKLPGA------------------------------GSKGSFIDQLFGIELE 127 (305)
T ss_pred CcccccCCCCccccCHHHHHHHHHHHHHHHhccc------------------------------CCCCcHHHHhhceEEE
Confidence 773 4599999999999999999987431 0134679999999999
Q ss_pred eeeeecCCC-CccccccceeecCcccccC---ccHHHHHHhcCccceecCCCcccccccCCcceeeEEEecccCCceEEE
Q 017540 178 NETRCLRCE-TVTARDETFFDLSLDIEQN---SSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVI 253 (369)
Q Consensus 178 ~~~~C~~C~-~~~~~~~~~~~l~l~i~~~---~~l~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~~L~i 253 (369)
..++|..|+ ..+...+++..|+++++.. .+|+++|+.++..+.. ..|+.|+......++..|.++|++|+|
T Consensus 128 ~~~~C~~C~~~~~~~~e~f~~Lsl~i~~~~~~~~l~~~L~~~~~~~~~-----~~~~~~~~~~~~~k~~~i~~lP~vLii 202 (305)
T cd02657 128 TKMKCTESPDEEEVSTESEYKLQCHISITTEVNYLQDGLKKGLEEEIE-----KHSPTLGRDAIYTKTSRISRLPKYLTV 202 (305)
T ss_pred EEEEcCCCCCCCccccccceEEEeecCCCcccccHHHHHHHhhhhhhh-----hcCcccCCCceEEEEEEeccCCcEEEE
Confidence 999999999 7899999999999999876 5899999998886643 468899988888899999999999999
Q ss_pred EeeeeeeeccccccccccceeecCcccccCCCCCCCCceEEEEEEEEeecCCCCCccEEEEEeeC--CcEEEEeCCccee
Q 017540 254 HLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTAEDADIEYSLFAVVVHVGSGPNHGHYVSLVKSH--NHWLFFDDENVEM 331 (369)
Q Consensus 254 ~l~R~~~~~~~~~~~K~~~~v~~p~~l~l~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~~~vr~~--~~W~~~nD~~V~~ 331 (369)
+|+||.++...+...|+...|.||.+|||..++. ...+|+|+|||+|.|.+.++|||+||+|.. ++|++|||+.|++
T Consensus 203 ~LkRF~~~~~~~~~~Ki~~~v~fP~~Ldl~~~~~-~~~~Y~L~~vI~H~G~~~~~GHY~~~~~~~~~~~W~~fdD~~V~~ 281 (305)
T cd02657 203 QFVRFFWKRDIQKKAKILRKVKFPFELDLYELCT-PSGYYELVAVITHQGRSADSGHYVAWVRRKNDGKWIKFDDDKVSE 281 (305)
T ss_pred EEECCccccccCceeecCcEEECCceEecccccC-CCCcEEEEEEEEecCCCCCCcEEEEEEEcCCCCeEEEEECCceEE
Confidence 9999999887677889999999999999999886 568999999999999878999999999995 8999999999999
Q ss_pred eChhhHHhhhcCcccCCCCCCceEEEEEE
Q 017540 332 IDESAVQTFFGSAQEYSSNTDHGYILFYE 360 (369)
Q Consensus 332 v~~~~v~~~~~~~~~~~~~~~~~y~l~Y~ 360 (369)
+++++|.+..+|+ ...+||||||+
T Consensus 282 ~~~~~v~~~~~~~-----~~~~aYiL~Y~ 305 (305)
T cd02657 282 VTEEDILKLSGGG-----DWHIAYILLYK 305 (305)
T ss_pred eCHHHHHhhcCCC-----CCceEEEEEEC
Confidence 9999999876653 25799999996
No 8
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.9e-58 Score=423.63 Aligned_cols=306 Identities=28% Similarity=0.506 Sum_probs=260.4
Q ss_pred CccccccCCchhhhhHHHHHhhCChhHHHHHHhhhccCCCCCcchhhHHHHHHHHHHHHHhcccCCCccChHHHHHHHHh
Q 017540 21 RYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKK 100 (369)
Q Consensus 21 ~~~GL~N~gntCy~NsvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 100 (369)
+++||.|+||||||||+||+|+++|+|+++++.+... .......++.++|+.||.+|..+.... +.+..+. .+..
T Consensus 1 g~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~~--~~~~~~~~~~~~l~~lf~~~~~~~~~~--~~~~~~~-~~~~ 75 (334)
T cd02659 1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPT--EDDDDNKSVPLALQRLFLFLQLSESPV--KTTELTD-KTRS 75 (334)
T ss_pred CCCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCCc--ccCcccccHHHHHHHHHHHHHhCCccc--cCcchhh-eecc
Confidence 4899999999999999999999999999999986322 223345679999999999999876533 3443332 2222
Q ss_pred -hccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCcCCCCCCCCCCCCCcCCccccccccccceeEeee
Q 017540 101 -QNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNE 179 (369)
Q Consensus 101 -~~~~~~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lF~~~~~~~ 179 (369)
....+..+.||||+||+..|++.|++++... ...+++.++|.+.+...
T Consensus 76 ~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~-------------------------------~~~~~i~~lF~g~~~~~ 124 (334)
T cd02659 76 FGWDSLNTFEQHDVQEFFRVLFDKLEEKLKGT-------------------------------GQEGLIKNLFGGKLVNY 124 (334)
T ss_pred CCCCCCCcccchhHHHHHHHHHHHHHHHhccC-------------------------------cccchhhhhCceEEEeE
Confidence 2345778999999999999999999876431 12356999999999999
Q ss_pred eeecCCCCccccccceeecCcccccCccHHHHHHhcCccceecCCCcccccccCCcceeeEEEecccCCceEEEEeeeee
Q 017540 180 TRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFK 259 (369)
Q Consensus 180 ~~C~~C~~~~~~~~~~~~l~l~i~~~~~l~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~~L~i~l~R~~ 259 (369)
++|..|+..+...+++..|+|+++...+++++|+.++.++.+++.+.+.|++|++...+.++..|.++|++|+|+|+||.
T Consensus 125 ~~C~~C~~~s~~~e~f~~l~l~i~~~~~l~~~l~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vLii~l~Rf~ 204 (334)
T cd02659 125 IICKECPHESEREEYFLDLQVAVKGKKNLEESLDAYVQGETLEGDNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRFE 204 (334)
T ss_pred EEecCCCceecccccceEEEEEcCCCCCHHHHHHHhcCeeEecCCccEecCcCCCcccEEEEEEeecCCCEEEEEeeeeE
Confidence 99999999999999999999999999999999999999999999999999999999899999999999999999999999
Q ss_pred eeccccccccccceeecCcccccCCCCCC--------------CCceEEEEEEEEeecCCCCCccEEEEEee--CCcEEE
Q 017540 260 YIEQLGRYKKLSYRVVFPLELKLSNTAED--------------ADIEYSLFAVVVHVGSGPNHGHYVSLVKS--HNHWLF 323 (369)
Q Consensus 260 ~~~~~~~~~K~~~~v~~p~~l~l~~~~~~--------------~~~~Y~L~~vi~H~G~~~~~GHY~~~vr~--~~~W~~ 323 (369)
++...+...|+...|.||..|++..++.. ...+|+|+|||+|.|+ .++|||+||+|. +++|++
T Consensus 205 ~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~vI~H~G~-~~~GHY~~~vk~~~~~~W~~ 283 (334)
T cd02659 205 FDFETMMRIKINDRFEFPLELDMEPYTEKGLAKKEGDSEKKDSESYIYELHGVLVHSGD-AHGGHYYSYIKDRDDGKWYK 283 (334)
T ss_pred EccccCcceeCCceEeCCceecCccccccccccccccccccCCCCeeEEEEEEEEecCC-CCCCCeEEEEECCCCCceEE
Confidence 98777788999999999999999987643 3578999999999997 899999999998 599999
Q ss_pred EeCCcceeeChhhHHhhhcCcccCC----------CCCCceEEEEEEEeC
Q 017540 324 FDDENVEMIDESAVQTFFGSAQEYS----------SNTDHGYILFYESLG 363 (369)
Q Consensus 324 ~nD~~V~~v~~~~v~~~~~~~~~~~----------~~~~~~y~l~Y~r~~ 363 (369)
|||..|+++++++|++...|+.... ..+.+||||||+|++
T Consensus 284 ~nD~~V~~i~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~ay~l~Y~~~~ 333 (334)
T cd02659 284 FNDDVVTPFDPNDAEEECFGGEETQKTYDSGPRAFKRTTNAYMLFYERKS 333 (334)
T ss_pred EeCcccEECCHHHHHHHcCCCccccccccccccccccccceEEEEEEEeC
Confidence 9999999999999986655554332 236789999999975
No 9
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.7e-58 Score=415.13 Aligned_cols=300 Identities=33% Similarity=0.564 Sum_probs=260.7
Q ss_pred ccccccCCchhhhhHHHHHhhCChhHHHHHHhhhccCCCCCcchhhHHHHHHHHHHHHHhcccCCCccChHHHHHHHHhh
Q 017540 22 YFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQ 101 (369)
Q Consensus 22 ~~GL~N~gntCy~NsvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~l~~~ 101 (369)
|+||.|.||||||||+||+|+++|+|+++++...... .......++.++|+.++.+|....... +.|..|..++...
T Consensus 1 ~~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~p~~~~~~l~~~ 77 (304)
T cd02661 1 GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSK-DCCNEGFCMMCALEAHVERALASSGPG--SAPRIFSSNLKQI 77 (304)
T ss_pred CCCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhh-hccCCcchHHHHHHHHHHHHHhCCCCc--cChHHHHHHHHHH
Confidence 6899999999999999999999999999998643221 223345579999999999998765543 8899999999988
Q ss_pred ccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCcCCCCCCCCCCCCCcCCccccccccccceeEeeeee
Q 017540 102 NELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETR 181 (369)
Q Consensus 102 ~~~~~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lF~~~~~~~~~ 181 (369)
.+.|..+.||||+||+.++|+.|+.+.......... ........+++.++|.+.+...++
T Consensus 78 ~~~f~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~--------------------~~~~~~~~~~i~~~F~g~~~~~~~ 137 (304)
T cd02661 78 SKHFRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKA--------------------VDPSSQETTLVQQIFGGYLRSQVK 137 (304)
T ss_pred HHhhcCcchhhHHHHHHHHHHHHHHHHhhhcccccc--------------------cCccccCCChhhhcCCcEEeeeEE
Confidence 889999999999999999999999876543221100 001112346799999999999999
Q ss_pred ecCCCCccccccceeecCcccccCccHHHHHHhcCccceecCCCcccccccCCcceeeEEEecccCCceEEEEeeeeeee
Q 017540 182 CLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYI 261 (369)
Q Consensus 182 C~~C~~~~~~~~~~~~l~l~i~~~~~l~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~~L~i~l~R~~~~ 261 (369)
|..|+..+...+.+..++++++...+++++|+.++.++.+++.+.+.|++|++...+.++..|.++|++|+|+|+||.++
T Consensus 138 C~~C~~~s~~~e~~~~l~l~i~~~~~l~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~iL~i~l~Rf~~~ 217 (304)
T cd02661 138 CLNCKHVSNTYDPFLDLSLDIKGADSLEDALEQFTKPEQLDGENKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSNF 217 (304)
T ss_pred eCCCCCCcCccccceeeeeecCCCCcHHHHHHHhcCceeeCCCCCeeCCCCCCccceEEEEEEecCCcEEEEEEeccccC
Confidence 99999999999999999999999899999999999999999988899999999999999999999999999999999986
Q ss_pred ccccccccccceeecCcccccCCCCCC---CCceEEEEEEEEeecCCCCCccEEEEEee-CCcEEEEeCCcceeeChhhH
Q 017540 262 EQLGRYKKLSYRVVFPLELKLSNTAED---ADIEYSLFAVVVHVGSGPNHGHYVSLVKS-HNHWLFFDDENVEMIDESAV 337 (369)
Q Consensus 262 ~~~~~~~K~~~~v~~p~~l~l~~~~~~---~~~~Y~L~~vi~H~G~~~~~GHY~~~vr~-~~~W~~~nD~~V~~v~~~~v 337 (369)
...|+...|.||..|+|..+... ...+|+|+|||+|.|.+.++|||++|+|. +++|++|||..|+++++++|
T Consensus 218 ----~~~Ki~~~v~f~~~L~l~~~~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~~~~W~~~nD~~V~~v~~~~v 293 (304)
T cd02661 218 ----RGGKINKQISFPETLDLSPYMSQPNDGPLKYKLYAVLVHSGFSPHSGHYYCYVKSSNGKWYNMDDSKVSPVSIETV 293 (304)
T ss_pred ----CccccCCeEecCCeechhhccccCCCCCceeeEEEEEEECCCCCCCcCCEEEEECCCCCEEEEeCCeeEECCHHHh
Confidence 35799999999999999988764 57899999999999997799999999998 89999999999999999999
Q ss_pred HhhhcCcccCCCCCCceEEEEEE
Q 017540 338 QTFFGSAQEYSSNTDHGYILFYE 360 (369)
Q Consensus 338 ~~~~~~~~~~~~~~~~~y~l~Y~ 360 (369)
+ ..+||||||.
T Consensus 294 ~------------~~~aYil~Y~ 304 (304)
T cd02661 294 L------------SQKAYILFYI 304 (304)
T ss_pred c------------CCCcEEEEeC
Confidence 8 6799999994
No 10
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.1e-57 Score=411.15 Aligned_cols=280 Identities=31% Similarity=0.487 Sum_probs=242.1
Q ss_pred ccccCCchhhhhHHHHHhhCChhHHHHHHhhhccC-CCCCcchhhHHHHHHHHHHHHHhcccC------------CCccC
Q 017540 24 GLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNN-KNLGDAEENLLTCLADLFTQIRAQKKK------------TGVIA 90 (369)
Q Consensus 24 GL~N~gntCy~NsvLQ~L~~~p~f~~~l~~~~~~~-~~~~~~~~~~~~~l~~l~~~l~~~~~~------------~~~~~ 90 (369)
||.|+||||||||+||+|+++|+||++++...... .....+..++.++|.+||..|+..... ...+.
T Consensus 1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~i~ 80 (311)
T cd02658 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFPSDVVDPANDLNCQLIKLADGLLSGRYSKPASLKSENDPYQVGIK 80 (311)
T ss_pred CcccCCcchHHHHHHHHHHCCHHHHHHHhhhccccCCCcCCccccHHHHHHHHHHHhcCCCcCCCccccccccccccccC
Confidence 89999999999999999999999999998732211 122234567999999999999875422 23589
Q ss_pred hHHHHHHHHhhccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCcCCCCCCCCCCCCCcCCcccccccc
Q 017540 91 PKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHK 170 (369)
Q Consensus 91 ~~~~~~~l~~~~~~~~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 170 (369)
|..|+..++...+.|..+.||||+||+..||+.|++++... ....+.+
T Consensus 81 p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~--------------------------------~~~~~~~ 128 (311)
T cd02658 81 PSMFKALIGKGHPEFSTMRQQDALEFLLHLIDKLDRESFKN--------------------------------LGLNPND 128 (311)
T ss_pred cHHHHHHHhccChhhcccccccHHHHHHHHHHHHHHhhccc--------------------------------ccCCchh
Confidence 99999999998999999999999999999999999876421 1123778
Q ss_pred ccceeEeeeeeecCCCCccccccceeecCcccccC--------------ccHHHHHHhcCccceecCCCcccccccCCcc
Q 017540 171 NFQGILTNETRCLRCETVTARDETFFDLSLDIEQN--------------SSITSCLKNFSSTETLNAEDKFFCDKCCSLQ 236 (369)
Q Consensus 171 lF~~~~~~~~~C~~C~~~~~~~~~~~~l~l~i~~~--------------~~l~~~L~~~~~~e~~~~~~~~~C~~C~~~~ 236 (369)
+|.+.+...++|..|+..+...+++..++|+++.. .+|+++|+.++.++.++ +.|+.|+...
T Consensus 129 ~f~~~~~~~i~C~~C~~~s~~~e~~~~lsL~l~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~i~----~~C~~C~~~~ 204 (311)
T cd02658 129 LFKFMIEDRLECLSCKKVKYTSELSEILSLPVPKDEATEKEEGELVYEPVPLEDCLKAYFAPETIE----DFCSTCKEKT 204 (311)
T ss_pred heEEEeeEEEEcCCCCCEEEeecceeEEeeecccccccccccccccCCCCCHHHHHHHHcCccccc----ccccCCCCcc
Confidence 99999999999999999888889999999988753 38999999999998886 6799999999
Q ss_pred eeeEEEecccCCceEEEEeeeeeeeccccccccccceeecCcccccCCCCCCCCceEEEEEEEEeecCCCCCccEEEEEe
Q 017540 237 EAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTAEDADIEYSLFAVVVHVGSGPNHGHYVSLVK 316 (369)
Q Consensus 237 ~~~~~~~i~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~p~~l~l~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~~~vr 316 (369)
.+.++..|.++|++|+|+|+||.++.. +...|+...|.+|..+ ...+|+|+|||+|.|.+.++|||++|+|
T Consensus 205 ~a~k~~~i~~lP~vLii~LkRF~~~~~-~~~~Ki~~~v~~p~~l--------~~~~Y~L~~vI~H~G~~~~~GHY~~~vk 275 (311)
T cd02658 205 TATKTTGFKTFPDYLVINMKRFQLLEN-WVPKKLDVPIDVPEEL--------GPGKYELIAFISHKGTSVHSGHYVAHIK 275 (311)
T ss_pred cEEEEEEeecCCceEEEEeEEEEecCC-CceEeeccccccCCcC--------CCCcEEEEEEEEccCCCCCCcceEEEEe
Confidence 999999999999999999999998643 4568999999999877 4478999999999998889999999999
Q ss_pred eC----CcEEEEeCCcceeeChhhHHhhhcCcccCCCCCCceEEEEEE
Q 017540 317 SH----NHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYE 360 (369)
Q Consensus 317 ~~----~~W~~~nD~~V~~v~~~~v~~~~~~~~~~~~~~~~~y~l~Y~ 360 (369)
.. ++|++|||+.|++++..+|. ..+||||||+
T Consensus 276 ~~~~~~~~W~~fnD~~V~~~~~~~~~------------~~~~YilfY~ 311 (311)
T cd02658 276 KEIDGEGKWVLFNDEKVVASQDPPEM------------KKLGYIYFYQ 311 (311)
T ss_pred CCCCCCCCEEEecCceeEECCccccc------------CCcceEEEEC
Confidence 86 89999999999999999886 7899999996
No 11
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.1e-56 Score=400.02 Aligned_cols=244 Identities=39% Similarity=0.694 Sum_probs=222.1
Q ss_pred ccccCCchhhhhHHHHHhhCChhHHHHHHhhhccCCCCCcchhhHHHHHHHHHHHHHhcccCCCccChHHHHHHHHhhcc
Q 017540 24 GLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQNE 103 (369)
Q Consensus 24 GL~N~gntCy~NsvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 103 (369)
||.|+||||||||+||+|+++|+||++++. .|..|+..+....+
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~------------------------------------~P~~~~~~l~~~~~ 44 (279)
T cd02667 1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE------------------------------------TPKELFSQVCRKAP 44 (279)
T ss_pred CCcCCCCchHHHHHHHHHhcCHHHHHHHHH------------------------------------CHHHHHHHHHHhhH
Confidence 899999999999999999999999999987 45666666666667
Q ss_pred ccCCCCCChHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCcCCCCCCCCCCCCCcCCccccccccccceeEeeeeeec
Q 017540 104 LFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCL 183 (369)
Q Consensus 104 ~~~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lF~~~~~~~~~C~ 183 (369)
.|..++||||+|||..||+.|+. .+.++|.|.+...++|.
T Consensus 45 ~f~~~~QqDA~Efl~~lld~l~~----------------------------------------~i~~~F~G~~~~~i~C~ 84 (279)
T cd02667 45 QFKGYQQQDSHELLRYLLDGLRT----------------------------------------FIDSIFGGELTSTIMCE 84 (279)
T ss_pred hhcCCchhhHHHHHHHHHHHHHH----------------------------------------hhhhhcceEEEEEEEcC
Confidence 78999999999999999999972 37889999999999999
Q ss_pred CCCCccccccceeecCccccc----CccHHHHHHhcCccceecCCCcccccccCCcceeeEEEecccCCceEEEEeeeee
Q 017540 184 RCETVTARDETFFDLSLDIEQ----NSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFK 259 (369)
Q Consensus 184 ~C~~~~~~~~~~~~l~l~i~~----~~~l~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~~L~i~l~R~~ 259 (369)
.|+..+...+++..|+|+++. ..+|+++|+.++.+|.++|++.+.|++|++ +.++..|.++|++|+|+|+||.
T Consensus 85 ~C~~~s~~~E~f~~L~Lp~~~~~~~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~---a~k~~~i~~~P~~Lii~LkRF~ 161 (279)
T cd02667 85 SCGTVSLVYEPFLDLSLPRSDEIKSECSIESCLKQFTEVEILEGNNKFACENCTK---AKKQYLISKLPPVLVIHLKRFQ 161 (279)
T ss_pred CCCCEeCccccceEEecCCCcccCCCCCHHHHHHhhcCeeEecCCCcccCCccCc---eeeEeEhhhCCCeEEEEEeccc
Confidence 999999999999999998753 468999999999999999999999999987 7788999999999999999999
Q ss_pred eeccccccccccceeecCcccccCCCCCC--------CCceEEEEEEEEeecCCCCCccEEEEEee--------------
Q 017540 260 YIEQLGRYKKLSYRVVFPLELKLSNTAED--------ADIEYSLFAVVVHVGSGPNHGHYVSLVKS-------------- 317 (369)
Q Consensus 260 ~~~~~~~~~K~~~~v~~p~~l~l~~~~~~--------~~~~Y~L~~vi~H~G~~~~~GHY~~~vr~-------------- 317 (369)
++.. +...|+...|.||..|||..|+.. ...+|+|+|||+|.|.. ++|||+||+|.
T Consensus 162 ~~~~-~~~~Ki~~~v~fP~~Ldl~~~~~~~~~~~~~~~~~~Y~L~~vi~H~G~~-~~GHY~a~v~~~~~~~~~~~~~~~~ 239 (279)
T cd02667 162 QPRS-ANLRKVSRHVSFPEILDLAPFCDPKCNSSEDKSSVLYRLYGVVEHSGTM-RSGHYVAYVKVRPPQQRLSDLTKSK 239 (279)
T ss_pred cCcc-cCceecCceEeCCCccchhhccCccccccccCCCceEEEEEEEEEeCCC-CCCEeEEEEEcCccccccccccccc
Confidence 8776 367899999999999999998864 56899999999999995 99999999997
Q ss_pred ---------CCcEEEEeCCcceeeChhhHHhhhcCcccCCCCCCceEEEEEE
Q 017540 318 ---------HNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYE 360 (369)
Q Consensus 318 ---------~~~W~~~nD~~V~~v~~~~v~~~~~~~~~~~~~~~~~y~l~Y~ 360 (369)
++.||+|||+.|++++.++|. ..+||||||+
T Consensus 240 ~~~~~~~~~~~~W~~~dD~~V~~v~~~~v~------------~~~aYiLfYe 279 (279)
T cd02667 240 PAADEAGPGSGQWYYISDSDVREVSLEEVL------------KSEAYLLFYE 279 (279)
T ss_pred cccccCCCCCCcEEEEECCccEECCHHHhc------------cCCcEEEEeC
Confidence 579999999999999999998 6799999996
No 12
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=7.5e-55 Score=409.49 Aligned_cols=285 Identities=27% Similarity=0.436 Sum_probs=238.6
Q ss_pred CCccccccCCchhhhhHHHHHhhCChhHHHHHHhhhccCCCCCcchhhHHHHHHHHHHHHHhcccCCCccChHHHHHHHH
Q 017540 20 ERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLK 99 (369)
Q Consensus 20 ~~~~GL~N~gntCy~NsvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~l~ 99 (369)
++++||.|+|||||||||||+|+++|+||++++....... ......+++++|..++++||.+......++|..|++.+.
T Consensus 117 ~G~vGL~NlGnTCYmNsvLQ~L~~~p~lr~~~l~~~~~~~-~~~~~~~l~~~l~~l~~kl~~~~~~~~~isP~~fl~~l~ 195 (440)
T cd02669 117 PGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYEN-IKDRKSELVKRLSELIRKIWNPRNFKGHVSPHELLQAVS 195 (440)
T ss_pred CCccCccCCCCchHHHHHHHHHHCCHHHHHHHhhcccccc-ccCCCcHHHHHHHHHHHHHhccccCCCccCHHHHHHHHH
Confidence 4599999999999999999999999999999997432211 112345799999999999998765455699999999997
Q ss_pred hh-ccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCcCCCCCCCCCCCCCcCCccccccccccceeEee
Q 017540 100 KQ-NELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTN 178 (369)
Q Consensus 100 ~~-~~~~~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lF~~~~~~ 178 (369)
.. ...|..+.||||+|||.+||+.|++++.... ....++|+++|+|++..
T Consensus 196 ~~~~~~f~~~~QqDA~EFl~~LLd~L~~~l~~~~-----------------------------~~~~~ii~~~F~G~l~~ 246 (440)
T cd02669 196 KVSKKKFSITEQSDPVEFLSWLLNTLHKDLGGSK-----------------------------KPNSSIIHDCFQGKVQI 246 (440)
T ss_pred hhcccccCCcccCCHHHHHHHHHHHHHHHhccCC-----------------------------CCCCCcceeccCceEEE
Confidence 64 4678899999999999999999999875320 12457899999999999
Q ss_pred eeeecCCC---------------CccccccceeecCcccccCc--------------cHHHHHHhcCccceecCCCcccc
Q 017540 179 ETRCLRCE---------------TVTARDETFFDLSLDIEQNS--------------SITSCLKNFSSTETLNAEDKFFC 229 (369)
Q Consensus 179 ~~~C~~C~---------------~~~~~~~~~~~l~l~i~~~~--------------~l~~~L~~~~~~e~~~~~~~~~C 229 (369)
.+.|..|. ..++..++|+.|+|++|... +++++|+ ++.|
T Consensus 247 ~~~c~~~~~~~~~~~~~~~~c~~~~s~~~~pF~~LsLdip~~~~~~~~~~~~~l~~~~l~e~L~------------ky~~ 314 (440)
T cd02669 247 ETQKIKPHAEEEGSKDKFFKDSRVKKTSVSPFLLLTLDLPPPPLFKDGNEENIIPQVPLKQLLK------------KYDG 314 (440)
T ss_pred EEEeecccccccccccccccccccceeeeccceEEEecCCCCccccccccccccCcccHHHHHH------------hcCC
Confidence 99887553 24567889999999998753 4455553 3667
Q ss_pred cccCCcceeeEEEecccCCceEEEEeeeeeeeccccccccccceeecCcc-cccCCCCC------CCCceEEEEEEEEee
Q 017540 230 DKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPLE-LKLSNTAE------DADIEYSLFAVVVHV 302 (369)
Q Consensus 230 ~~C~~~~~~~~~~~i~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~p~~-l~l~~~~~------~~~~~Y~L~~vi~H~ 302 (369)
..|.....+.+++.|.++|++|+|+|+||.++. +...|+...|.||.. |||.+|+. ....+|+|+|||+|.
T Consensus 315 ~~c~~~~~a~k~~~I~~LP~vLiihLKRF~~~~--~~~~K~~t~V~FP~~~LDm~~y~~~~~~~~~~~~~Y~L~avI~H~ 392 (440)
T cd02669 315 KTETELKDSLKRYLISRLPKYLIFHIKRFSKNN--FFKEKNPTIVNFPIKNLDLSDYVHFDKPSLNLSTKYNLVANIVHE 392 (440)
T ss_pred ccceecccceEEEEEeeCCcEEEEEEecccCCC--CccccCCCEEECCCCccchhhhhCccccccCCCceEEEEEEEEEe
Confidence 777777778999999999999999999999875 467899999999997 89999974 457899999999999
Q ss_pred cCCCCCccEEEEEee--CCcEEEEeCCcceeeChhhHHhhhcCcccCCCCCCceEEEEEE
Q 017540 303 GSGPNHGHYVSLVKS--HNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYE 360 (369)
Q Consensus 303 G~~~~~GHY~~~vr~--~~~W~~~nD~~V~~v~~~~v~~~~~~~~~~~~~~~~~y~l~Y~ 360 (369)
|...++|||++|+|+ +++||+|||..|+++++++|. ..+||||||+
T Consensus 393 G~~~~sGHY~a~v~~~~~~~W~~fdD~~V~~v~~~~v~------------~~eaYll~Y~ 440 (440)
T cd02669 393 GTPQEDGTWRVQLRHKSTNKWFEIQDLNVKEVLPQLIF------------LSESYIQIWE 440 (440)
T ss_pred ccCCCCeeEEEEEEcCCCCeEEEEECCeeeEcCHHHhc------------cCCceEEEeC
Confidence 994499999999997 689999999999999999998 7999999996
No 13
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-53 Score=355.20 Aligned_cols=327 Identities=28% Similarity=0.400 Sum_probs=246.4
Q ss_pred CCccccccCCchhhhhHHHHHhhCChhHHHHHHhh-----hccCCCCCcchhhHHHHHHHHHHHHHhcccCCCccChHHH
Q 017540 20 ERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDY-----YSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRF 94 (369)
Q Consensus 20 ~~~~GL~N~gntCy~NsvLQ~L~~~p~f~~~l~~~-----~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~ 94 (369)
-++.||.|.|||||||++||||.++..+...++.- ......-........+.+..|..-|-+-..+ .+.|++|
T Consensus 69 ~~p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~prg~~g~~~~k~F~~l~~~~~~Hg~~--sis~~nF 146 (415)
T COG5533 69 LPPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYETPGCHGPK--SISPRNF 146 (415)
T ss_pred cCCccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCCCCcchhHHHHHHHHHhccccCCCc--ccchHHH
Confidence 44789999999999999999999999999866531 1111111122223444455555544432222 3999999
Q ss_pred HHHHHhhccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCcCCCCCCC----CCCCCCcCCcccccccc
Q 017540 95 VQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTN----GLANGVRKEPLVTWVHK 170 (369)
Q Consensus 95 ~~~l~~~~~~~~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~~ 170 (369)
+..++.+.+.|+..-|||++||+.++|+.||++++.-.....-....+.....+++..- ..++........+.+.+
T Consensus 147 ~~i~~~~n~~fs~dmQqD~qEFl~fflD~LHedln~N~Srs~i~~l~de~e~~Reel~l~~~S~~EWn~~L~sn~S~v~~ 226 (415)
T COG5533 147 IDILSGRNKLFSGDMQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVREELPLSHFSHHEWNLHLRSNKSLVAK 226 (415)
T ss_pred HHHHccccccccccchhhHHHHHHHHHHHHHhhhcCCcccccccccchHHHHHHhhcCcchhhhhhhHHhhccchHHHHH
Confidence 99999999999999999999999999999999987643332222222222222222221 23334445557799999
Q ss_pred ccceeEeeeeeecCCCCccccccceeecCcccccC--ccHHHHHHhcCccceecCCCcccccccCCcceeeEEEecccCC
Q 017540 171 NFQGILTNETRCLRCETVTARDETFFDLSLDIEQN--SSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSP 248 (369)
Q Consensus 171 lF~~~~~~~~~C~~C~~~~~~~~~~~~l~l~i~~~--~~l~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P 248 (369)
.|.|+..++.+|..|++.++...+|..|.++++.. ..|.++++.|.+.|.++|++.|.|++|+.++...+++.|..+|
T Consensus 227 ~f~gq~~srlqC~~C~~TStT~a~fs~l~vp~~~v~~~~l~eC~~~f~~~e~L~g~d~W~CpkC~~k~ss~K~~~I~~lP 306 (415)
T COG5533 227 TFFGQDKSRLQCEACNYTSTTIAMFSTLLVPPYEVVQLGLQECIDRFYEEEKLEGKDAWRCPKCGRKESSRKRMEILVLP 306 (415)
T ss_pred HHhhhhhhhhhhhhcCCceeEEeccceeeeccchheeecHHHHHHHhhhHHhhcCcccccCchhcccccchheEEEEecC
Confidence 99999999999999999999999999999999874 4599999999999999999999999999999999999999999
Q ss_pred ceEEEEeeeeeeeccccccccccc--------eeecCcccccCCCCCCCCceEEEEEEEEeecCCCCCccEEEEEeeCCc
Q 017540 249 HTLVIHLKRFKYIEQLGRYKKLSY--------RVVFPLELKLSNTAEDADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNH 320 (369)
Q Consensus 249 ~~L~i~l~R~~~~~~~~~~~K~~~--------~v~~p~~l~l~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~~~vr~~~~ 320 (369)
++|||+|+||..... ...|+.. .+++-..+++..-+.-.+.+|.|.|||||.|+ .++|||+++|+.++.
T Consensus 307 ~~LII~i~RF~i~V~--~~~kiD~p~gw~~~~~~e~~v~~~f~~~~~~~P~~Y~L~gv~Ch~G~-L~gGHY~s~v~~~~~ 383 (415)
T COG5533 307 DVLIIHISRFHISVM--GRKKIDTPQGWKNTASVEVNVTLLFNNGIGYIPRKYSLLGVVCHNGT-LNGGHYFSEVKRSGT 383 (415)
T ss_pred ceEEEEeeeeeEEee--cccccCCCcchhccCCceecccccccCCCCCCccceeEEEEEeecce-ecCceeEEeeeecCc
Confidence 999999999974333 1222221 11111122333333335789999999999999 999999999999999
Q ss_pred EEEEeCCcceeeChhhHHhhhcCcccCCCCCCceEEEEEEEe
Q 017540 321 WLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYESL 362 (369)
Q Consensus 321 W~~~nD~~V~~v~~~~v~~~~~~~~~~~~~~~~~y~l~Y~r~ 362 (369)
|+.|||+.|++++--.... ...+|+|||+|.
T Consensus 384 W~~~dDs~vr~~~~~t~~~-----------~pSsYilFY~r~ 414 (415)
T COG5533 384 WNVYDDSQVRKGSRTTSGS-----------HPSSYILFYTRS 414 (415)
T ss_pred eEEechhheeeccceeccc-----------CCcceEEEEEec
Confidence 9999999999997544332 568899999995
No 14
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-53 Score=384.06 Aligned_cols=322 Identities=30% Similarity=0.525 Sum_probs=269.7
Q ss_pred CccccccCCchhhhhHHHHHhhCChhHHHHHHhhhcc----CCCCCcchhhHHHHHHHHHHHHHhcccCCCccChHHHHH
Q 017540 21 RYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSN----NKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQ 96 (369)
Q Consensus 21 ~~~GL~N~gntCy~NsvLQ~L~~~p~f~~~l~~~~~~----~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~ 96 (369)
+.+||.|+||||||||.||||.|++.+|++++.-.-+ ..........++.++..|+.++..+.. .++.|+.|..
T Consensus 264 GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~vAsayadLik~ly~~~~--haf~Ps~fK~ 341 (823)
T COG5560 264 GTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNL--HAFTPSGFKK 341 (823)
T ss_pred cccceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccchhhhHHHHHHHHHHHHhCccc--cccChHHHHH
Confidence 5799999999999999999999999999999853111 112233445688888999999986543 4599999999
Q ss_pred HHHhhccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhCC-CCCCCCCCCcCCCCCCCCCCCCCc---CCcccccccccc
Q 017540 97 RLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKS-DPESSSPSEKTANGPTNGLANGVR---KEPLVTWVHKNF 172 (369)
Q Consensus 97 ~l~~~~~~~~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~lF 172 (369)
.++..+..|.++.|||++||+.++|+.||++++....... ..+...+.... ..+..+...+ .....|+|.++|
T Consensus 342 tIG~fn~~fsGy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~d~~---~vKk~a~ecW~~H~kRNdSiItdLF 418 (823)
T COG5560 342 TIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDV---VVKKKAKECWWEHLKRNDSIITDLF 418 (823)
T ss_pred HHhhhHHHhcCccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCcchH---HHHHHHHHHHHHHHhcCcccHHHHH
Confidence 9999999999999999999999999999999997654432 11111111000 1122222222 223779999999
Q ss_pred ceeEeeeeeecCCCCccccccceeecCcccccC-----------------------------------------------
Q 017540 173 QGILTNETRCLRCETVTARDETFFDLSLDIEQN----------------------------------------------- 205 (369)
Q Consensus 173 ~~~~~~~~~C~~C~~~~~~~~~~~~l~l~i~~~----------------------------------------------- 205 (369)
+|.+.+...|+.|+.+++..+||+.|+|++|..
T Consensus 419 qgmyKSTL~Cp~C~~vsitfDPfmdlTLPLPvs~vw~htiv~fp~~g~~~pl~iel~~sSt~~~lk~lv~~~~gk~gc~e 498 (823)
T COG5560 419 QGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQPLKIELDASSTIRGLKKLVDAEYGKLGCFE 498 (823)
T ss_pred HHHhhceeeccCcCceeeeecchhhccccCchhhcccccEEEECCCCCCCceEEEEeccchHHHHHHHHHHHhccCCccc
Confidence 999999999999999999999999999998742
Q ss_pred --------------------------------------------------------------------------------
Q 017540 206 -------------------------------------------------------------------------------- 205 (369)
Q Consensus 206 -------------------------------------------------------------------------------- 205 (369)
T Consensus 499 i~v~~iy~g~~y~~l~~~dk~ll~~I~~~d~vylYe~~~ngi~vpvvh~~~~~gYks~rlFg~pflqlnv~~~~~i~~kL 578 (823)
T COG5560 499 IKVMCIYYGGNYNMLEPADKVLLQDIPQTDFVYLYETNDNGIEVPVVHLRIEKGYKSKRLFGDPFLQLNVLIKASIYDKL 578 (823)
T ss_pred eeEEEEEeccchhhcchhhHHHHhhcCccceEEEeecCCCCeEEEEEeccccccccchhhhCCcceEEEeecchhhHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 017540 206 -------------------------------------------------------------------------------- 205 (369)
Q Consensus 206 -------------------------------------------------------------------------------- 205 (369)
T Consensus 579 vkE~~ell~~v~~k~tdvd~~~~q~~l~r~es~p~~wl~l~teid~kree~veeE~~~n~nd~vvi~cew~ek~y~~lFs 658 (823)
T COG5560 579 VKEFEELLVLVEMKKTDVDLVSEQVRLLREESSPSSWLKLETEIDTKREEQVEEEGQMNFNDAVVISCEWEEKRYLSLFS 658 (823)
T ss_pred HHHHHHHHHHHhhcchhhhhhhhhccchhcccCcchhhhhhhhccchhhhhhhhhhccCCCcceEEeeeccccchhhhhc
Confidence
Q ss_pred ----------------ccHHHHHHhcCccceecCCCcccccccCCcceeeEEEecccCCceEEEEeeeeeeecccccccc
Q 017540 206 ----------------SSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYKK 269 (369)
Q Consensus 206 ----------------~~l~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~~L~i~l~R~~~~~~~~~~~K 269 (369)
.||+++|..|.++|.+.-.+.++|+.|+.++.+.+++.++.+|++|+||++||+..+. ..-|
T Consensus 659 y~~lw~~~ei~~~~rtiTL~dCl~eFskpEqLgl~DswyCpgCkefrqasKqmelwrlP~iLiihLkRFss~rs--frdK 736 (823)
T COG5560 659 YDPLWTIREIGAAERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRS--FRDK 736 (823)
T ss_pred CCccchhHHhhhccCCCcHHHHHHHhccHhhcCCcccccCCchHhhhhhhhhhhhhcCChheeeehhhhhhccc--chhh
Confidence 4899999999999999999999999999999999999999999999999999997666 7789
Q ss_pred ccceeecCcc-cccCCCC---CCCCceEEEEEEEEeecCCCCCccEEEEEee--CCcEEEEeCCcceeeChhhHHhhhcC
Q 017540 270 LSYRVVFPLE-LKLSNTA---EDADIEYSLFAVVVHVGSGPNHGHYVSLVKS--HNHWLFFDDENVEMIDESAVQTFFGS 343 (369)
Q Consensus 270 ~~~~v~~p~~-l~l~~~~---~~~~~~Y~L~~vi~H~G~~~~~GHY~~~vr~--~~~W~~~nD~~V~~v~~~~v~~~~~~ 343 (369)
+..-|+||.. |+|+.+. .++...|.|+||=.|.|- ..+|||+||+|+ +++||+|||++|+++.+++..
T Consensus 737 iddlVeyPiddldLs~~~~~~~~p~liydlyavDNHygg-lsgGHYtAyarn~~n~~wy~fdDsritevdped~v----- 810 (823)
T COG5560 737 IDDLVEYPIDDLDLSGVEYMVDDPRLIYDLYAVDNHYGG-LSGGHYTAYARNFANNGWYLFDDSRITEVDPEDSV----- 810 (823)
T ss_pred hhhhhccccccccccceEEeecCcceEEEeeeccccccc-cCCcceeeeeecccCCceEEecCccccccCccccc-----
Confidence 9999999987 7888755 345688999999999998 899999999999 889999999999999999977
Q ss_pred cccCCCCCCceEEEEEEEe
Q 017540 344 AQEYSSNTDHGYILFYESL 362 (369)
Q Consensus 344 ~~~~~~~~~~~y~l~Y~r~ 362 (369)
...||+|||+|.
T Consensus 811 -------tssaYvLFyrrk 822 (823)
T COG5560 811 -------TSSAYVLFYRRK 822 (823)
T ss_pred -------cceeEEEEEEec
Confidence 789999999996
No 15
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.6e-51 Score=358.24 Aligned_cols=212 Identities=39% Similarity=0.670 Sum_probs=194.3
Q ss_pred ccccCCchhhhhHHHHHhhCChhHHHHHHhhhccCCCCCcchhhHHHHHHHHHHHHHhcccCCCccChHHHHHHHHhhcc
Q 017540 24 GLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQNE 103 (369)
Q Consensus 24 GL~N~gntCy~NsvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 103 (369)
||.|+||||||||+||+|+++|+||+++....
T Consensus 1 Gl~N~g~tCy~ns~lQ~L~~~~~f~~~~~~~~------------------------------------------------ 32 (240)
T cd02662 1 GLVNLGNTCFMNSVLQALASLPSLIEYLEEFL------------------------------------------------ 32 (240)
T ss_pred CCcCCCCccHHHHHHHHHHCCHHHHHHHHHHH------------------------------------------------
Confidence 89999999999999999999999999998842
Q ss_pred ccCCCCCChHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCcCCCCCCCCCCCCCcCCccccccccccceeEeeeeeec
Q 017540 104 LFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCL 183 (369)
Q Consensus 104 ~~~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lF~~~~~~~~~C~ 183 (369)
.||||+||+..||+.|+. .+.++|.|.+...++|.
T Consensus 33 -----~QqDa~EFl~~ll~~l~~----------------------------------------~i~~~F~g~~~~~i~C~ 67 (240)
T cd02662 33 -----EQQDAHELFQVLLETLEQ----------------------------------------LLKFPFDGLLASRIVCL 67 (240)
T ss_pred -----hhcCHHHHHHHHHHHHHH----------------------------------------hccCccccEEEEEEEeC
Confidence 999999999999999972 17788999999999999
Q ss_pred CCCCccc-cccceeecCcccccC-----ccHHHHHHhcCccceecCCCcccccccCCcceeeEEEecccCCceEEEEeee
Q 017540 184 RCETVTA-RDETFFDLSLDIEQN-----SSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKR 257 (369)
Q Consensus 184 ~C~~~~~-~~~~~~~l~l~i~~~-----~~l~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~~L~i~l~R 257 (369)
.|+..+. ..+++..|+|++|.. .+++++|+.++.+|.+++ +.|++| +..|.++|++|+|+|+|
T Consensus 68 ~C~~~s~~~~e~f~~LsL~ip~~~~~~~~sl~~~L~~~~~~E~l~~---~~C~~C--------~~~i~~lP~vLii~LkR 136 (240)
T cd02662 68 QCGESSKVRYESFTMLSLPVPNQSSGSGTTLEHCLDDFLSTEIIDD---YKCDRC--------QTVIVRLPQILCIHLSR 136 (240)
T ss_pred CCCCccCcceeeeeeeEecccccCCCCCCCHHHHHHHhcCcccccC---cCCCCC--------eEEeecCCcEEEEEEEE
Confidence 9999866 489999999999875 599999999999999875 889999 56899999999999999
Q ss_pred eeeeccccccccccceeecCcccccCCCCCCCCceEEEEEEEEeecCCCCCccEEEEEeeC-------------------
Q 017540 258 FKYIEQLGRYKKLSYRVVFPLELKLSNTAEDADIEYSLFAVVVHVGSGPNHGHYVSLVKSH------------------- 318 (369)
Q Consensus 258 ~~~~~~~~~~~K~~~~v~~p~~l~l~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~~~vr~~------------------- 318 (369)
|.++.. +...|+...|.||..| ....|+|+|||+|.|+ .++|||+||+|..
T Consensus 137 F~~~~~-~~~~K~~~~v~fp~~l--------~~~~Y~L~avi~H~G~-~~~GHY~~~~k~~~~~~~~~~~~~~~~~~~~~ 206 (240)
T cd02662 137 SVFDGR-GTSTKNSCKVSFPERL--------PKVLYRLRAVVVHYGS-HSSGHYVCYRRKPLFSKDKEPGSFVRMREGPS 206 (240)
T ss_pred EEEcCC-CceeeeccEEECCCcc--------CCceEEEEEEEEEecc-CCCceEEEEEeCCCcccccccccccccccccC
Confidence 999886 7889999999999998 5689999999999999 4999999999986
Q ss_pred ---CcEEEEeCCcceeeChhhHHhhhcCcccCCCCCCceEEEEEE
Q 017540 319 ---NHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYE 360 (369)
Q Consensus 319 ---~~W~~~nD~~V~~v~~~~v~~~~~~~~~~~~~~~~~y~l~Y~ 360 (369)
++||+|||+.|+++++++|+. ..+||||||+
T Consensus 207 ~~~~~W~~fnD~~V~~v~~~~v~~-----------~~~aY~LfYe 240 (240)
T cd02662 207 STSHPWWRISDTTVKEVSESEVLE-----------QKSAYMLFYE 240 (240)
T ss_pred ccCCCEEEEechheEEeCHHHHhh-----------CCCEEEEEeC
Confidence 899999999999999999942 7899999996
No 16
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-49 Score=360.12 Aligned_cols=292 Identities=29% Similarity=0.494 Sum_probs=253.4
Q ss_pred CCCccccccCCchhhhhHHHHHhhCChhHHHHHHhh-hccCCCCCcchhhHHHHHHHHHHHHHhcccCCC--------cc
Q 017540 19 GERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDY-YSNNKNLGDAEENLLTCLADLFTQIRAQKKKTG--------VI 89 (369)
Q Consensus 19 ~~~~~GL~N~gntCy~NsvLQ~L~~~p~f~~~l~~~-~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~--------~~ 89 (369)
+++++||.|+||+||+|||+|+|+++|.|....+.. ..-......+..+|-++|.+|...|.+++...+ -|
T Consensus 304 gpgytGl~NlGNSCYlnSVmQ~Lf~i~~fq~~~~~~~~~f~~~~~~P~ndf~cQ~~Kl~~gm~sgkys~p~~~~~~qngI 383 (763)
T KOG0944|consen 304 GPGYTGLINLGNSCYLNSVMQSLFSIPSFQRRYLEQERIFNCYPKDPTNDFNCQLAKLLHGMLSGKYSKPLMDPSNQNGI 383 (763)
T ss_pred CCCccceeecCcchhHHHHHHHheecccHHHhhccccceeecCCCCcchhHHHHHHHHHHHhhcCcccCccCCccccCCc
Confidence 345999999999999999999999999999998875 222234456677899999999999998875553 58
Q ss_pred ChHHHHHHHHhhccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCcCCCCCCCCCCCCCcCCccccccc
Q 017540 90 APKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVH 169 (369)
Q Consensus 90 ~~~~~~~~l~~~~~~~~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 169 (369)
+|..|...+++.++.|+..+||||+|||.+||+.|.+..... ...+.
T Consensus 384 sP~mFK~~igknHpeFst~~QQDA~EFllfLl~ki~~n~rs~---------------------------------~~npt 430 (763)
T KOG0944|consen 384 SPLMFKALIGKNHPEFSTNRQQDAQEFLLFLLEKIRENSRSS---------------------------------LPNPT 430 (763)
T ss_pred CHHHHHHHHcCCCccccchhhhhHHHHHHHHHHHHhhccccc---------------------------------CCCHH
Confidence 999999999999999999999999999999999997632211 02388
Q ss_pred cccceeEeeeeeecCCCCccccccceeecCccccc------CccHHHHHHhcCccceecCCCcccccccCCcceeeEEEe
Q 017540 170 KNFQGILTNETRCLRCETVTARDETFFDLSLDIEQ------NSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMK 243 (369)
Q Consensus 170 ~lF~~~~~~~~~C~~C~~~~~~~~~~~~l~l~i~~------~~~l~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~ 243 (369)
++|.+.+..++.|..|.+++...++...+.+++|. ..++..+|+.|+.+.+.+ +.|..|+.+..+.++.+
T Consensus 431 d~frF~ve~Rv~C~~c~kVrYs~~~~~~i~lpv~~~~~v~~~v~~~~cleaff~pq~~d----f~s~ac~~K~~a~kt~~ 506 (763)
T KOG0944|consen 431 DLFRFEVEDRVSCLGCRKVRYSYESEYLIQLPVPMTNEVREKVPISACLEAFFEPQVDD----FWSTACGEKKGATKTTR 506 (763)
T ss_pred HHHHhhhhhhhhhhccccccccchhheeeEeeccccccccccCCHHHHHHHhcCCcchh----hhhHhhcCccccccccc
Confidence 99999999999999999999999988899888874 459999999999995544 89999999999999999
Q ss_pred cccCCceEEEEeeeeeeeccccccccccceeecCcccccCCCCC------------------------------------
Q 017540 244 IKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTAE------------------------------------ 287 (369)
Q Consensus 244 i~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~p~~l~l~~~~~------------------------------------ 287 (369)
+.++|++|+||+.||.+. .+..+|+...+++|..||++.+..
T Consensus 507 ~ksfP~yLiiqv~rf~~~--dw~pkKld~~iempe~ldls~~rs~g~~p~ee~lpde~~~~~~~~~d~s~i~qL~~MGFp 584 (763)
T KOG0944|consen 507 FKSFPDYLIIQVGRFTLQ--DWVPKKLDVSIEMPEELDLSSYRSKGLQPGEEALPDEAPETSEFAADRSVISQLVEMGFP 584 (763)
T ss_pred cccCCceEEEEeeEEEec--CceeeeeccceecchhhchhhhhhcCCCCcccccCCcCcccCccchhHHHHHHHHHcCCC
Confidence 999999999999999993 368999999999999999988763
Q ss_pred --------------------------------------------------------------------------------
Q 017540 288 -------------------------------------------------------------------------------- 287 (369)
Q Consensus 288 -------------------------------------------------------------------------------- 287 (369)
T Consensus 585 ~eac~rAly~tgN~~aEaA~NWl~~HMdDpd~~~p~vvp~~~~~a~~~~~~e~~v~si~smGf~~~qa~~aL~~~n~nve 664 (763)
T KOG0944|consen 585 EEACRRALYYTGNSGAEAASNWLMEHMDDPDIDDPFVVPGNSPKADAREVDEESVASIVSMGFSRNQAIKALKATNNNVE 664 (763)
T ss_pred HHHHHHHHhhhcCccHHHHHHHHHHhccCcccCCceecCCCCCccccCCCChhHheeeeeecCcHHHHHHHHHhcCccHH
Confidence
Q ss_pred -------------------------------------CCCceEEEEEEEEeecCCCCCccEEEEEeeCCcEEEEeCCcce
Q 017540 288 -------------------------------------DADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVE 330 (369)
Q Consensus 288 -------------------------------------~~~~~Y~L~~vi~H~G~~~~~GHY~~~vr~~~~W~~~nD~~V~ 330 (369)
++..+|+|.|+|+|.|++..+|||||++|..|+|++|||++|-
T Consensus 665 ravDWif~h~d~~~ed~~~~~s~~~~~~~~~~~~~~~dg~~~Y~L~a~IsHmGts~~sGHYV~hirKegkWVlfNDeKv~ 744 (763)
T KOG0944|consen 665 RAVDWIFSHMDIPVEDAAEGESSSAIESESTPSGTGKDGPGKYALFAFISHMGTSAHSGHYVCHIRKEGKWVLFNDEKVA 744 (763)
T ss_pred HHHHHHHhcccccccccCcCCCCCcchhhcCCcccCCCCCcceeEEEEEecCCCCCCCcceEEEEeecCcEEEEcchhhh
Confidence 3578899999999999999999999999999999999999997
Q ss_pred eeChhhHHhhhcCcccCCCCCCceEEEEEEEeC
Q 017540 331 MIDESAVQTFFGSAQEYSSNTDHGYILFYESLG 363 (369)
Q Consensus 331 ~v~~~~v~~~~~~~~~~~~~~~~~y~l~Y~r~~ 363 (369)
.+.++. ...+|++||+|.+
T Consensus 745 -~S~~pp-------------K~lgYvY~y~R~~ 763 (763)
T KOG0944|consen 745 -ASQEPP-------------KDLGYVYLYTRIA 763 (763)
T ss_pred -hccCCh-------------hhcceEEEEEecC
Confidence 343333 6899999999974
No 17
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.3e-48 Score=338.29 Aligned_cols=217 Identities=43% Similarity=0.748 Sum_probs=200.2
Q ss_pred ccccCCchhhhhHHHHHhhCChhHHHHHHhhhccCCCCCcchhhHHHHHHHHHHHHHhcccCCCccChHHHHHHHHhhcc
Q 017540 24 GLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQNE 103 (369)
Q Consensus 24 GL~N~gntCy~NsvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 103 (369)
||.|.||+||+||+||+|++
T Consensus 1 gl~n~~~~cy~n~~~Q~l~~------------------------------------------------------------ 20 (230)
T cd02674 1 GLRNLGNTCYMNSILQCLSA------------------------------------------------------------ 20 (230)
T ss_pred CccccCcchhhhHHHHHHHH------------------------------------------------------------
Confidence 89999999999999999998
Q ss_pred ccCCCCCChHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCcCCCCCCCCCCCCCcCCccccccccccceeEeeeeeec
Q 017540 104 LFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCL 183 (369)
Q Consensus 104 ~~~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lF~~~~~~~~~C~ 183 (369)
.||||+||+.+||+.|+ +.+.++|.+.+...++|.
T Consensus 21 -----~QqDa~Ef~~~ll~~l~----------------------------------------~~i~~~F~~~~~~~~~C~ 55 (230)
T cd02674 21 -----DQQDAQEFLLFLLDGLH----------------------------------------SIIVDLFQGQLKSRLTCL 55 (230)
T ss_pred -----hhhhHHHHHHHHHHHHh----------------------------------------hhHHheeCCEEeCcEEcC
Confidence 89999999999999997 127889999999999999
Q ss_pred CCCCccccccceeecCcccccCc------cHHHHHHhcCccceecCCCcccccccCCcceeeEEEecccCCceEEEEeee
Q 017540 184 RCETVTARDETFFDLSLDIEQNS------SITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKR 257 (369)
Q Consensus 184 ~C~~~~~~~~~~~~l~l~i~~~~------~l~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~~L~i~l~R 257 (369)
.|+..+...+++..|+|++|... +|+++|+.++.++.+++.+.+.|++|+....+.++..+.++|++|+|+++|
T Consensus 56 ~C~~~~~~~e~~~~l~l~ip~~~~~~~~~sl~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~iLii~l~R 135 (230)
T cd02674 56 TCGKTSTTFEPFTYLSLPIPSGSGDAPKVTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKR 135 (230)
T ss_pred CCcCCcceecceeEEEEecccccCCCCCCCHHHHHHHhcCccccCCCCceeCCCCCCccceEEEEEEecCChhhEeEhhh
Confidence 99999999999999999998754 999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccccccccccceeecCc-ccccCCCC----CCCCceEEEEEEEEeecCCCCCccEEEEEeeC--CcEEEEeCCcce
Q 017540 258 FKYIEQLGRYKKLSYRVVFPL-ELKLSNTA----EDADIEYSLFAVVVHVGSGPNHGHYVSLVKSH--NHWLFFDDENVE 330 (369)
Q Consensus 258 ~~~~~~~~~~~K~~~~v~~p~-~l~l~~~~----~~~~~~Y~L~~vi~H~G~~~~~GHY~~~vr~~--~~W~~~nD~~V~ 330 (369)
|.++. +...|+...|.||. .+++..+. .....+|+|+|||+|.|.. .+|||+||+|.. ++|++|||+.|+
T Consensus 136 ~~~~~--~~~~K~~~~v~~~~~~l~l~~~~~~~~~~~~~~Y~L~~vI~H~G~~-~~GHY~~~~~~~~~~~W~~fnD~~V~ 212 (230)
T cd02674 136 FSFSR--GSTRKLTTPVTFPLNDLDLTPYVDTRSFTGPFKYDLYAVVNHYGSL-NGGHYTAYCKNNETNDWYKFDDSRVT 212 (230)
T ss_pred eecCC--CCcccCCceEeccccccccccccCcccCCCCceEEEEEEEEeeCCC-CCcEEEEEEECCCCCceEEEcCCeEE
Confidence 99876 46889999999996 47887763 3467889999999999995 999999999994 999999999999
Q ss_pred eeChhhHHhhhcCcccCCCCCCceEEEEEE
Q 017540 331 MIDESAVQTFFGSAQEYSSNTDHGYILFYE 360 (369)
Q Consensus 331 ~v~~~~v~~~~~~~~~~~~~~~~~y~l~Y~ 360 (369)
+++++++. +.+||||||+
T Consensus 213 ~i~~~~~~------------~~~~YlL~Y~ 230 (230)
T cd02674 213 KVSESSVV------------SSSAYILFYE 230 (230)
T ss_pred EcCHHHcc------------CCCceEEEeC
Confidence 99999984 8999999996
No 18
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=100.00 E-value=3.2e-47 Score=338.68 Aligned_cols=256 Identities=35% Similarity=0.586 Sum_probs=206.8
Q ss_pred ccccccCCchhhhhHHHHHhhCChhHHHHHHhh----hccCCCCCcchhhHHHHHHHHHHHHHhcccCCCccChHHHHHH
Q 017540 22 YFGLENFGNTCYCNSVLQALYFCVPFREQLLDY----YSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQR 97 (369)
Q Consensus 22 ~~GL~N~gntCy~NsvLQ~L~~~p~f~~~l~~~----~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~ 97 (369)
|+||.|.||||||||+||+|+++|+|+++|+.. ............+++++|+.+|..|+........+.+..+...
T Consensus 1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~~~~~~ 80 (269)
T PF00443_consen 1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSNSSDSSISPSDFINA 80 (269)
T ss_dssp --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSCSSSSEEHCHHHHHH
T ss_pred CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhcccccceeecccccc
Confidence 689999999999999999999999999999974 1111233344557999999999999998555566999999999
Q ss_pred HHhhccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCcCCCCCCCCCCCCCcCCccccccccccceeEe
Q 017540 98 LKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILT 177 (369)
Q Consensus 98 l~~~~~~~~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lF~~~~~ 177 (369)
+....+.|..+.||||+||+..|++.|+++....... ...........+++.++|.+.+.
T Consensus 81 l~~~~~~~~~~~qqDa~E~l~~ll~~l~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~f~~~~~ 140 (269)
T PF00443_consen 81 LSSINPSFSNGEQQDAHEFLSFLLDWLDEEFNSSFKR--------------------KSWKNTNSSEDSLISDLFGGQFE 140 (269)
T ss_dssp HHHHCGGGGSSSTEEHHHHHHHHHHHHHHHHTSCSSH--------------------HHHHHHHCCEESHHHHHH-EEEE
T ss_pred ccccccccccccccchhhhhcccccccchhhcccccc--------------------ccccccccccccccccccccccc
Confidence 9998888999999999999999999999876542100 00001122356788999999999
Q ss_pred eeeeecCCCCccccccceeecCcccccCccHHHHHHhcCccceecCCCcccccccCCcceeeEEEecccCCceEEEEeee
Q 017540 178 NETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKR 257 (369)
Q Consensus 178 ~~~~C~~C~~~~~~~~~~~~l~l~i~~~~~l~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~~L~i~l~R 257 (369)
..+.|..|+.. ...+.++|++|+|+++|
T Consensus 141 ~~~~c~~c~~~----------------------------------------------------~~~~~~~P~~L~i~l~R 168 (269)
T PF00443_consen 141 SSIKCSSCKNS----------------------------------------------------QSSISSLPPILIIQLKR 168 (269)
T ss_dssp EEEEETTTTCE----------------------------------------------------EEEEEEBBSEEEEEEE-
T ss_pred ccccccccccc----------------------------------------------------ccccccccceeeecccc
Confidence 99999998777 45788999999999999
Q ss_pred eeeeccccccccccceeecC-cccccCCCCCCC------CceEEEEEEEEeecCCCCCccEEEEEeeC--CcEEEEeCCc
Q 017540 258 FKYIEQLGRYKKLSYRVVFP-LELKLSNTAEDA------DIEYSLFAVVVHVGSGPNHGHYVSLVKSH--NHWLFFDDEN 328 (369)
Q Consensus 258 ~~~~~~~~~~~K~~~~v~~p-~~l~l~~~~~~~------~~~Y~L~~vi~H~G~~~~~GHY~~~vr~~--~~W~~~nD~~ 328 (369)
|.++...+...|+...|.+| .+|+|..+...+ ..+|+|+|||+|.| +.++|||+||+|++ ++|++|||+.
T Consensus 169 ~~~~~~~~~~~K~~~~v~~~~~~l~l~~~~~~~~~~~~~~~~Y~L~avi~H~G-~~~~GHY~a~v~~~~~~~W~~~dD~~ 247 (269)
T PF00443_consen 169 FEFDQETGRSKKINNPVEFPLEELDLSPYLEKNNSECQSNVKYRLVAVIVHYG-SADSGHYVAYVRDSDDGKWYKFDDSR 247 (269)
T ss_dssp EEEESTSSEEEE--CEEB--SSEEEGGGGBSSCCCTHTSSSEEEEEEEEEEES-STTSEEEEEEEEETTTTEEEEEETTE
T ss_pred ceeccccccccccccccccCchhhhhhhhhccccccccccceeeehhhhcccc-ccccceEEEeeccccCCeEEEeeCCc
Confidence 99988877899999999999 699999988654 47999999999999 59999999999984 4699999999
Q ss_pred ceeeChhhHHhhhcCcccCCCCCCceEEEEE
Q 017540 329 VEMIDESAVQTFFGSAQEYSSNTDHGYILFY 359 (369)
Q Consensus 329 V~~v~~~~v~~~~~~~~~~~~~~~~~y~l~Y 359 (369)
|+++++++|.+.. ..+||||||
T Consensus 248 v~~~~~~~v~~~~---------~~~~yll~Y 269 (269)
T PF00443_consen 248 VTEVSWEEVIKSS---------NSTAYLLFY 269 (269)
T ss_dssp EEEESHHHHCCGG---------STCEEEEEE
T ss_pred eEECCHHHHhhcc---------CCceEEEeC
Confidence 9999999998422 489999999
No 19
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.6e-49 Score=361.70 Aligned_cols=311 Identities=29% Similarity=0.472 Sum_probs=271.6
Q ss_pred ccccccCCchhhhhHHHHHhhCChhHHHHHHhhhccCC-CCCcchhhHHHHHHHHHHHHHhcccCCCccChHHHHHHHHh
Q 017540 22 YFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNK-NLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKK 100 (369)
Q Consensus 22 ~~GL~N~gntCy~NsvLQ~L~~~p~f~~~l~~~~~~~~-~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 100 (369)
++||.|-|+|||||+++|=|..+|.+|..+..+-.... ....-...++++|+.+|.++..++=.. +-|.-|...++-
T Consensus 95 fVGLKNagatcyMNav~QQlymIP~Lrh~ll~~~~~td~pd~s~~e~vl~~lQ~iF~hL~~s~lQy--yVPeg~Wk~Fr~ 172 (944)
T KOG1866|consen 95 FVGLKNAGATCYMNAVIQQLYMIPGLRHLLLAFVGTTDLPDMSGDEKVLRHLQVIFGHLAASQLQY--YVPEGFWKQFRL 172 (944)
T ss_pred eeeecCCCchHHHhhhhhhhhhcccccchhhhhcccccchhhcchHHHHHHHHHHHHHHHHHhhhh--hcchhHHHHhhc
Confidence 99999999999999999999999999999987533311 111122348999999999998875444 889999998888
Q ss_pred hccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCcCCCCCCCCCCCCCcCCccccccccccceeEeeee
Q 017540 101 QNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNET 180 (369)
Q Consensus 101 ~~~~~~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lF~~~~~~~~ 180 (369)
-+...+..+||||.|||..+++.+.+.+.+.. ..-.+...|+|.+....
T Consensus 173 ~~~pln~reqhDA~eFf~sLld~~De~LKklg-------------------------------~p~lf~n~f~G~ysdqK 221 (944)
T KOG1866|consen 173 WGEPLNLREQHDALEFFNSLLDSLDEALKKLG-------------------------------HPQLFSNTFGGSYSDQK 221 (944)
T ss_pred cCCccchHhhhhHHHHHHHHHHHHHHHHHHhC-------------------------------CcHHHHHHhcCccchhh
Confidence 77888899999999999999999999988763 23458888999999999
Q ss_pred eecCCCCccccccceeecCcccccCccHHHHHHhcCccceecCCCcccccccCCcceeeEEEecccCCceEEEEeeeeee
Q 017540 181 RCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKY 260 (369)
Q Consensus 181 ~C~~C~~~~~~~~~~~~l~l~i~~~~~l~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~~L~i~l~R~~~ 260 (369)
.|..|.+.-...|+|..++|++. ..+|+++|+.|.+-+.++|.|.|+|++|..++...++..|.+||.+|.||++||.+
T Consensus 222 IC~~CpHRY~~eE~F~~l~l~i~-~~nLeesLeqfv~gevlEG~nAYhCeKCdeK~~TvkRt~ik~LPsvl~IqLkRF~y 300 (944)
T KOG1866|consen 222 ICQGCPHRYECEESFTTLNLDIR-HQNLEESLEQFVKGEVLEGANAYHCEKCDEKVDTVKRTCIKKLPSVLAIQLKRFDY 300 (944)
T ss_pred hhccCCcccCccccceeeeeecc-cchHHHHHHHHHHHHHhcCcchhhhhhhhhhhHhHHHHHHhhCChhheehhhhccc
Confidence 99999998899999999999999 89999999999999999999999999999999999999999999999999999999
Q ss_pred eccccccccccceeecCcccccCCCCC--------------------CCCceEEEEEEEEeecCCCCCccEEEEEee---
Q 017540 261 IEQLGRYKKLSYRVVFPLELKLSNTAE--------------------DADIEYSLFAVVVHVGSGPNHGHYVSLVKS--- 317 (369)
Q Consensus 261 ~~~~~~~~K~~~~v~~p~~l~l~~~~~--------------------~~~~~Y~L~~vi~H~G~~~~~GHY~~~vr~--- 317 (369)
+...+..+|.+..++||..|||..|+. ..+.+|+|+||++|.|. +.+|||++|+++
T Consensus 301 D~e~~~~iK~n~~frFP~~ldMePYtvsg~a~~e~~~~~~g~~~e~s~~t~~YeLvGVlvHSGq-AsaGHYySfIk~rr~ 379 (944)
T KOG1866|consen 301 DWERECAIKFNDYFRFPRELDMEPYTVSGVAKLEGENVESGQQLEQSAGTTKYELVGVLVHSGQ-ASAGHYYSFIKQRRG 379 (944)
T ss_pred hhhhccccccchhcccchhhcCCceeehhhhhhccccCCcCcccccccCcceeEEEEEEEeccc-ccCcchhhhhhhhcc
Confidence 999899999999999999999999883 25789999999999999 899999999976
Q ss_pred --CCcEEEEeCCcceeeChhhHHhhhcCcccC--------CCCCCceEEEEEEEeCCCCC
Q 017540 318 --HNHWLFFDDENVEMIDESAVQTFFGSAQEY--------SSNTDHGYILFYESLGAGSN 367 (369)
Q Consensus 318 --~~~W~~~nD~~V~~v~~~~v~~~~~~~~~~--------~~~~~~~y~l~Y~r~~~~~~ 367 (369)
+++||+|||..|++.+..++...+-||..- -..+.+||||||+|++....
T Consensus 380 ~~~~kWykfnD~~Vte~~~n~me~~cfGGey~q~~~~~~~rrR~WNAYmlFYer~~d~p~ 439 (944)
T KOG1866|consen 380 EDGNKWYKFNDGDVTECKMNEMENECFGGEYMQMMKRMSYRRRWWNAYMLFYERMDDIPT 439 (944)
T ss_pred CCCCceEeccCccccccchhhHHHHhhcchhhhcccccchHHHhhhhHHHHHHHhcCCCc
Confidence 679999999999999988887554433211 03578999999999987643
No 20
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.1e-46 Score=340.06 Aligned_cols=278 Identities=24% Similarity=0.379 Sum_probs=216.1
Q ss_pred ccccccCCchhhhhHHHHHhhCChhHHHHHHhhhccCC--------------CCC-----cchhhHHHHHHHHHHHHHhc
Q 017540 22 YFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNK--------------NLG-----DAEENLLTCLADLFTQIRAQ 82 (369)
Q Consensus 22 ~~GL~N~gntCy~NsvLQ~L~~~p~f~~~l~~~~~~~~--------------~~~-----~~~~~~~~~l~~l~~~l~~~ 82 (369)
|+||.|+||||||||+||+|+++|+||+.++.+..... ... .....++.+|+.||..|+.+
T Consensus 1 PvGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s 80 (343)
T cd02666 1 PAGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHS 80 (343)
T ss_pred CCCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhC
Confidence 68999999999999999999999999999998642211 000 11236999999999999976
Q ss_pred ccCCCccChHHHHHHHHhhccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCcCCCCCCCCCCCCCcCC
Q 017540 83 KKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKE 162 (369)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~~~~~~~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (369)
... .+.|..++..+.. .||||+||+..+|+.|+.++........ ++ ......
T Consensus 81 ~~~--~v~P~~~l~~l~~--------~QQDa~Ef~~~lld~Le~~lk~~~~~~~-------------~~-----~~~~~~ 132 (343)
T cd02666 81 NTR--SVTPSKELAYLAL--------RQQDVTECIDNVLFQLEVALEPISNAFA-------------GP-----DTEDDK 132 (343)
T ss_pred CCC--ccCcHHHHHhccc--------cccchHHHHHHHHHHHHHHhcCcccccc-------------Cc-----cccccc
Confidence 544 4999998876652 8999999999999999998764221100 00 000111
Q ss_pred ccccccccccceeEeeeeeecCCC---CccccccceeecCccccc----------CccHHHHHHhcCccceecCCCcccc
Q 017540 163 PLVTWVHKNFQGILTNETRCLRCE---TVTARDETFFDLSLDIEQ----------NSSITSCLKNFSSTETLNAEDKFFC 229 (369)
Q Consensus 163 ~~~~~i~~lF~~~~~~~~~C~~C~---~~~~~~~~~~~l~l~i~~----------~~~l~~~L~~~~~~e~~~~~~~~~C 229 (369)
...++|.++|.|++.+.+.|..|+ ..+.+.|+|+.|+++|+. ..+|.++|+.++..+.
T Consensus 133 ~~~~~I~~lF~G~~~~~i~c~~~~~~~~~s~~~E~F~~L~l~I~~~~~~~~~~~~~~~L~d~L~~~~~~e~--------- 203 (343)
T cd02666 133 EQSDLIKRLFSGKTKQQLVPESMGNQPSVRTKTERFLSLLVDVGKKGREIVVLLEPKDLYDALDRYFDYDS--------- 203 (343)
T ss_pred chhhhhhHhceeeEEEEEEecccCCCCCCccccceeEEEEEecCcccccccccCCCCCHHHHHHHhcChhh---------
Confidence 345789999999999999999997 788899999999999985 6899999999998774
Q ss_pred cccCCcceeeEEEecccCCceEEEEeeeeeeeccccccccccceeecCcccccCCCC-----------------------
Q 017540 230 DKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTA----------------------- 286 (369)
Q Consensus 230 ~~C~~~~~~~~~~~i~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~p~~l~l~~~~----------------------- 286 (369)
|.++|++|.|+|+ .+.......+...+.++|...+...+.
T Consensus 204 --------------~~~~P~vl~~qlq---~~~~~~~~~~~~dry~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 266 (343)
T cd02666 204 --------------LTKLPQRSQVQAQ---LAQPLQRELISMDRYELPSSIDDIDELIREAIQSESSLVRQAQNELAELK 266 (343)
T ss_pred --------------hccCCHHHHHHHh---hcccccchheeeccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999988 222222445566666766654443322
Q ss_pred --------CCCCceEEEEEEEEeecCCCCCccEEEEEee--CCcEEEEeCCcceeeChhhHHhhhcCcccCCCCCCceEE
Q 017540 287 --------EDADIEYSLFAVVVHVGSGPNHGHYVSLVKS--HNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYI 356 (369)
Q Consensus 287 --------~~~~~~Y~L~~vi~H~G~~~~~GHY~~~vr~--~~~W~~~nD~~V~~v~~~~v~~~~~~~~~~~~~~~~~y~ 356 (369)
+....+|+|+|||+|.|. .++|||++|+|+ ++.|++|||..|++++.++|...-.|+ ..+||+
T Consensus 267 ~~~~~~~~~~~~~~Y~L~avv~H~G~-~~~GHY~~~~~~~~~~~W~~~dD~~V~~v~~~ev~~~~~~~------~~~pY~ 339 (343)
T cd02666 267 HEIEKQFDDLKSYGYRLHAVFIHRGE-ASSGHYWVYIKDFEENVWRKYNDETVTVVPASEVFLFTLGN------TATPYF 339 (343)
T ss_pred HHHHHhhcccCCCceEEEEEEEeecC-CCCCeEEEEEEECCCCeEEEEECCeeEEecHHHHhhcccCC------CCCCEE
Confidence 126888999999999999 599999999997 589999999999999999998642222 789999
Q ss_pred EEEE
Q 017540 357 LFYE 360 (369)
Q Consensus 357 l~Y~ 360 (369)
|+|.
T Consensus 340 l~Yv 343 (343)
T cd02666 340 LVYV 343 (343)
T ss_pred EEeC
Confidence 9995
No 21
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.6e-45 Score=310.67 Aligned_cols=225 Identities=27% Similarity=0.427 Sum_probs=188.3
Q ss_pred ccccCCchhhhhHHHHHhhCChhHHHHHHhhhccCCCCCcchhhHHHHHHHHHHHHHhcccCCCccChHHHHHHHHhhcc
Q 017540 24 GLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQNE 103 (369)
Q Consensus 24 GL~N~gntCy~NsvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 103 (369)
||.|.|||||+|++.|+|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~------------------------------------------------------------ 20 (228)
T cd02665 1 GLKNVGNTCWFSAVIQSLFS------------------------------------------------------------ 20 (228)
T ss_pred CccccCcchhHHHHHHHHHH------------------------------------------------------------
Confidence 89999999999999999987
Q ss_pred ccCCCCCChHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCcCCCCCCCCCCCCCcCCccccccccccceeEeeeeeec
Q 017540 104 LFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCL 183 (369)
Q Consensus 104 ~~~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lF~~~~~~~~~C~ 183 (369)
.||||+||+..||+.|++++....... .......++|.++|.|.....+.|
T Consensus 21 -----~QQDa~Ef~~~Lld~Le~~l~~~~~~~-----------------------~~~~~~~~~i~~lF~G~~~~~~~~- 71 (228)
T cd02665 21 -----QQQDVSEFTHLLLDWLEDAFQAAAEAI-----------------------SPGEKSKNPMVQLFYGTFLTEGVL- 71 (228)
T ss_pred -----HHHHHHHHHHHHHHHHHHHhccccccc-----------------------cccccccchHhhceEEEEEEEEEE-
Confidence 799999999999999999886432110 011124567999999999976666
Q ss_pred CCCCccccccceeecCcccccCccHHHHHHhcCccceecCCCcccccccCCcceeeEEEecccCCceEEEEeeeeeeecc
Q 017540 184 RCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQ 263 (369)
Q Consensus 184 ~C~~~~~~~~~~~~l~l~i~~~~~l~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~~L~i~l~R~~~~~~ 263 (369)
|+..+.+.|+|..|+|++....+|+++|+.++.++.+++.. |..+ ....++..|.++|++|+|+|+||.++.
T Consensus 72 -~~~~s~~~E~F~~L~l~i~~~~~L~e~L~~~~~ee~l~~~~---~~~~---~~~~~~~~i~~lP~vL~i~LkRF~~~~- 143 (228)
T cd02665 72 -EGKPFCNCETFGQYPLQVNGYGNLHECLEAAMFEGEVELLP---SDHS---VKSGQERWFTELPPVLTFELSRFEFNQ- 143 (228)
T ss_pred -CCCcccccCccEEEEEEECCCCCHHHHHHHhhhhccccccc---ccch---hhhhhhhhhhhCChhhEEEeEeeEEcC-
Confidence 77788899999999999999999999999999988887643 2222 234456679999999999999999976
Q ss_pred ccccccccceeecCcccccCCCCCCCCceEEEEEEEEeecCCCCCccEEEEEee--CCcEEEEeCCcceeeChhhHHhh-
Q 017540 264 LGRYKKLSYRVVFPLELKLSNTAEDADIEYSLFAVVVHVGSGPNHGHYVSLVKS--HNHWLFFDDENVEMIDESAVQTF- 340 (369)
Q Consensus 264 ~~~~~K~~~~v~~p~~l~l~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~~~vr~--~~~W~~~nD~~V~~v~~~~v~~~- 340 (369)
+...|+.+.|.||..| ....|+|+|||+|.|. .++|||++|+|. +++|++|||+.|+++++++|.+.
T Consensus 144 -~~~~Ki~~~v~FP~~l--------~~~~Y~L~aVi~H~G~-~~~GHY~~~i~~~~~~~W~~fdD~~V~~~~~~~v~~~~ 213 (228)
T cd02665 144 -GRPEKIHDKLEFPQII--------QQVPYELHAVLVHEGQ-ANAGHYWAYIYKQSRQEWEKYNDISVTESSWEEVERDS 213 (228)
T ss_pred -CccEECCEEEEeeCcc--------CCceeEEEEEEEecCC-CCCCEEEEEEEcCCCCEEEEEECCeeEEcCHHHHhhhc
Confidence 4678999999999987 3468999999999998 899999999986 78999999999999999999865
Q ss_pred hcCcccCCCCCCceEEEEEE
Q 017540 341 FGSAQEYSSNTDHGYILFYE 360 (369)
Q Consensus 341 ~~~~~~~~~~~~~~y~l~Y~ 360 (369)
+||+ .+.+||||||.
T Consensus 214 fGg~-----~~~~AYiLfYv 228 (228)
T cd02665 214 FGGG-----RNPSAYCLMYI 228 (228)
T ss_pred cCCC-----CCCceEEEEEC
Confidence 3443 26799999995
No 22
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-45 Score=349.43 Aligned_cols=331 Identities=33% Similarity=0.506 Sum_probs=259.8
Q ss_pred CCCCccccccCCchhhhhHHHHHhhCChhHHHHHHhhhccCC---CCCcchhhHHHHHHHHHHHHHhcccCCCccChHHH
Q 017540 18 EGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNK---NLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRF 94 (369)
Q Consensus 18 ~~~~~~GL~N~gntCy~NsvLQ~L~~~p~f~~~l~~~~~~~~---~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~ 94 (369)
.....+||.|+|||||||++||||..++.|+..++....... ...-....+..++..++..++....... +.|+.|
T Consensus 297 ~~~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~~~~~~~~~~l~~~~~~~l~~~~~~~~~~s-~~P~~f 375 (653)
T KOG1868|consen 297 DVFGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFINLDLFFGAEELESACAKLLQKLWHGHGQFS-VLPRRF 375 (653)
T ss_pred cccCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcccCCcccchhHHHHHHHhhhhhccCCCcee-cCcHHH
Confidence 345689999999999999999999999999966654311111 1233444677777777777777755443 889999
Q ss_pred HHHHHhhccccCCCCCChHHHHHHHHHHHHHHHHHHHHhh---CCCCCCCCCCCcCCCC-CCCCCCCCCcCCcccccccc
Q 017540 95 VQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEEAA---KSDPESSSPSEKTANG-PTNGLANGVRKEPLVTWVHK 170 (369)
Q Consensus 95 ~~~l~~~~~~~~~~~qqDa~Efl~~ll~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~ 170 (369)
+..+.+..+.|.+..|||++||+..+++.||+++...... .....+.......... ......+-.+....++.|.+
T Consensus 376 ~~~~~~y~~~~~~~~Qqd~qEfl~~lld~Lhe~ln~~~~~~~~~p~~~~~~~~~~~~~~s~~s~~~w~~~~~~~d~~i~~ 455 (653)
T KOG1868|consen 376 IRVLKRYSPNFSGYSQQDAQEFLIFLLDRLHEELNENTRPLKLSPLMGSYLLSELELSDSKKSLAEWLRYLEEEDSKIGD 455 (653)
T ss_pred HHHHhhcccccccccccchHHHHHHHHHhhhHhhhccCCCCccCccccccccccccccccchhHHHHHhhccccchHHHH
Confidence 9999999999999899999999999999999998775321 1111010000001111 10111222233334556999
Q ss_pred ccceeEeeeeeecCCCCccccccceeecCcccccC------ccHHHHHHhcCccceecCCCcccccccCCcceee--EEE
Q 017540 171 NFQGILTNETRCLRCETVTARDETFFDLSLDIEQN------SSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQ--KRM 242 (369)
Q Consensus 171 lF~~~~~~~~~C~~C~~~~~~~~~~~~l~l~i~~~------~~l~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~--~~~ 242 (369)
+|.++..+.++|..|+..+...+.|..++++||.. .+|++++..+++.+.+++++.+.|++|+...... ++.
T Consensus 456 lf~gQ~ks~Lkc~~cg~~s~t~~~f~~lslpIp~~~~~~~~~~L~~C~~~ft~~ekle~~~~w~Cp~c~~~~~~~~lK~~ 535 (653)
T KOG1868|consen 456 LFVGQLKSYLKCQACGYTSTTFETFTDLSLPIPKKGFAGGKVSLEDCLSLFTKEEKLEGDEAWLCPRCKHKESSKTLKKL 535 (653)
T ss_pred HHHHHHHhheehhhcCCcceeeecceeeEEecccccccccccchHhhhccccchhhcccccccCCccccCccccccccee
Confidence 99999999999999999999999999999999862 4599999999999999999999999999988885 999
Q ss_pred ecccCCceEEEEeeeeeeeccccccccccceeecCccc-ccCCCC---CCCCceEEEEEEEEeecCCCCCccEEEEEee-
Q 017540 243 KIKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPLEL-KLSNTA---EDADIEYSLFAVVVHVGSGPNHGHYVSLVKS- 317 (369)
Q Consensus 243 ~i~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~p~~l-~l~~~~---~~~~~~Y~L~~vi~H~G~~~~~GHY~~~vr~- 317 (369)
.|..+|++|++++.||..+.. ...|....|+||... ++..+. .+....|+|+|||+|.|+ .++|||+|+++.
T Consensus 536 ~i~~lp~iLiihL~Rf~~~~~--~~~k~~~~v~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~Gt-l~sGHYta~~~~~ 612 (653)
T KOG1868|consen 536 TILRLPKILIIHLKRFSSDGN--SFNKLSTGVDFPLREADLSPRFAEKGNNPKSYRLYAVVNHSGT-LNSGHYTAYVYKN 612 (653)
T ss_pred eeecCCHHHHHHHHHhccCcc--cccccceeeccchHhhhhchhccccCCCccceeeEEEEeccCc-ccCCceEEEEeec
Confidence 999999999999999998764 678899999999863 333222 234567999999999995 999999999987
Q ss_pred -CCcEEEEeCCcceeeChhhHHhhhcCcccCCCCCCceEEEEEEEeCC
Q 017540 318 -HNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYESLGA 364 (369)
Q Consensus 318 -~~~W~~~nD~~V~~v~~~~v~~~~~~~~~~~~~~~~~y~l~Y~r~~~ 364 (369)
.++|+.|||+.|+.++...+. ...||+|||+|.+.
T Consensus 613 ~~~~W~~fdDs~Vs~~~~~~~~------------~s~aYIlFY~~~~~ 648 (653)
T KOG1868|consen 613 EKQRWFTFDDSEVSPISETDVG------------SSSAYILFYERLGI 648 (653)
T ss_pred CCCceEEecCeeeecccccccc------------CCCceEEEeecCCc
Confidence 588999999999988888886 68999999999875
No 23
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-45 Score=338.58 Aligned_cols=304 Identities=27% Similarity=0.495 Sum_probs=260.8
Q ss_pred CCCccccccCCchhhhhHHHHHhhCChhHHHHHHhhhccCCCCCcchhhHHHHHHHHHHHHHhcccCCCccChHHHHHHH
Q 017540 19 GERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRL 98 (369)
Q Consensus 19 ~~~~~GL~N~gntCy~NsvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~l 98 (369)
-++++||.|.|.||||||.||+|+.+..||+.+...+..+ ......+.-+|+++|..|+.+... +++.+|.+.+
T Consensus 190 eTGYVGlrNqGATCYmNSLlQslffi~~FRk~Vy~ipTd~---p~grdSValaLQr~Fynlq~~~~P---vdTteltrsf 263 (1089)
T COG5077 190 ETGYVGLRNQGATCYMNSLLQSLFFIAKFRKDVYGIPTDH---PRGRDSVALALQRLFYNLQTGEEP---VDTTELTRSF 263 (1089)
T ss_pred ceeeeeeccCCceeeHHHHHHHHHHHHHHHHHhhcCCCCC---CCccchHHHHHHHHHHHHhccCCC---cchHHhhhhc
Confidence 3789999999999999999999999999999999875442 333445788999999999997654 8888877765
Q ss_pred HhhccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCcCCCCCCCCCCCCCcCCccccccccccceeEee
Q 017540 99 KKQNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTN 178 (369)
Q Consensus 99 ~~~~~~~~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lF~~~~~~ 178 (369)
+ +..+....|+|.+||...+.+.|+....+.. -+..+..+|-|...+
T Consensus 264 g--Wds~dsf~QHDiqEfnrVl~DnLEksmrgt~-------------------------------VEnaln~ifVgkmks 310 (1089)
T COG5077 264 G--WDSDDSFMQHDIQEFNRVLQDNLEKSMRGTV-------------------------------VENALNGIFVGKMKS 310 (1089)
T ss_pred C--cccchHHHHHhHHHHHHHHHHHHHHhhcCCh-------------------------------hhhHHhHHHHHHhhc
Confidence 4 3345567899999999999999987443321 234588999999999
Q ss_pred eeeecCCCCccccccceeecCcccccCccHHHHHHhcCccceecCCCcccccccCCcceeeEEEecccCCceEEEEeeee
Q 017540 179 ETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRF 258 (369)
Q Consensus 179 ~~~C~~C~~~~~~~~~~~~l~l~i~~~~~l~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~~L~i~l~R~ 258 (369)
.+.|.+-..++.+.+.+|.+++.+....+|++.+++|.+.|+++|+|+|.|++-| .+.+.+...|.++|++|.++++||
T Consensus 311 yikCvnvnyEsarvedfwdiqlNvK~~knLqeSfr~yIqvE~l~GdN~Y~ae~~G-lqdAkKGViFeSlPpVlhlqLKRF 389 (1089)
T COG5077 311 YIKCVNVNYESARVEDFWDIQLNVKGMKNLQESFRRYIQVETLDGDNRYNAEKHG-LQDAKKGVIFESLPPVLHLQLKRF 389 (1089)
T ss_pred eeeEEEechhhhhHHHHHHHHhcccchhhHHHHHHHhhhheeccCCccccccccc-chhhccceeeccCchHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999865 477889999999999999999999
Q ss_pred eeeccccccccccceeecCcccccCCCCCC-------CCceEEEEEEEEeecCCCCCccEEEEEee--CCcEEEEeCCcc
Q 017540 259 KYIEQLGRYKKLSYRVVFPLELKLSNTAED-------ADIEYSLFAVVVHVGSGPNHGHYVSLVKS--HNHWLFFDDENV 329 (369)
Q Consensus 259 ~~~~~~~~~~K~~~~v~~p~~l~l~~~~~~-------~~~~Y~L~~vi~H~G~~~~~GHY~~~vr~--~~~W~~~nD~~V 329 (369)
.++=..+...|++...+||.++||..+.+. .++.|.|+||++|.|+ ...|||+|+++. +++||+|||++|
T Consensus 390 eyDfe~d~mvKINDryEFP~eiDl~pfld~da~ksen~d~vY~LygVlVHsGD-l~~GHyYallKpe~dg~WykfdDtrV 468 (1089)
T COG5077 390 EYDFERDMMVKINDRYEFPLEIDLLPFLDRDADKSENSDAVYVLYGVLVHSGD-LHEGHYYALLKPEKDGRWYKFDDTRV 468 (1089)
T ss_pred ccccccCceeeecccccCcchhccccccCchhhhhcccCcEEEEEEEEEeccc-cCCceEEEEeccccCCCceeecceeh
Confidence 999888899999999999999999999863 4599999999999999 999999999994 999999999999
Q ss_pred eeeChhhHHhh-hcCcccCC---------CCCCceEEEEEEEeC
Q 017540 330 EMIDESAVQTF-FGSAQEYS---------SNTDHGYILFYESLG 363 (369)
Q Consensus 330 ~~v~~~~v~~~-~~~~~~~~---------~~~~~~y~l~Y~r~~ 363 (369)
+.++..+|++. +||..... ....+||||+|-|++
T Consensus 469 trat~kevleeNfGgd~~~~~k~r~~~~~kRfmsAYmLvYlRks 512 (1089)
T COG5077 469 TRATEKEVLEENFGGDHPYKDKIRDHSGIKRFMSAYMLVYLRKS 512 (1089)
T ss_pred hhHHHHHHHHHhcCCCCCCcccccCCchhhhhhhhheeeeehHh
Confidence 99999999854 55432221 123467999999975
No 24
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.8e-43 Score=303.00 Aligned_cols=239 Identities=29% Similarity=0.452 Sum_probs=184.6
Q ss_pred cccCCchhhhhHHHHHhhCChhHHHHHHhhhccCCCCCcchhhHHHHHHHHHHHHHhcccCCCccChHHHHHHHHhhccc
Q 017540 25 LENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQNEL 104 (369)
Q Consensus 25 L~N~gntCy~NsvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 104 (369)
|.|.||.||+|+.+|+|.++ ++..+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i------------------------------------------------------~~~~~~ 27 (245)
T cd02673 2 LVNTGNSCYFNSTMQALSSI------------------------------------------------------GKINTE 27 (245)
T ss_pred ceecCCeeeehhHHHHHHHH------------------------------------------------------hhhhhh
Confidence 78999999999999997642 223344
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCcCCCCCCCCCCCCCcCCccccccccccceeEeeeeeecC
Q 017540 105 FRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLR 184 (369)
Q Consensus 105 ~~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lF~~~~~~~~~C~~ 184 (369)
|..+.||||+|||..||+.|++++........... .........++|.+.+.+.++|..
T Consensus 28 F~~~~QQDAhEFL~~LLd~l~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~F~~~l~s~i~C~~ 86 (245)
T cd02673 28 FDNDDQQDAHEFLLTLLEAIDDIMQVNRTNVPPSN---------------------IEIKRLNPLEAFKYTIESSYVCIG 86 (245)
T ss_pred cCCCchhhHHHHHHHHHHHHHHHHHhhcccCCCCc---------------------ccccccCHhHheeeEEEeEEEecC
Confidence 88999999999999999999987654321110000 000011235789999999999999
Q ss_pred CCCccccccceeecCcccccC--ccHHHHHHhcCccceecCCCcccccccCCcceeeEEEecccCCceEEEEeeeeeeec
Q 017540 185 CETVTARDETFFDLSLDIEQN--SSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIE 262 (369)
Q Consensus 185 C~~~~~~~~~~~~l~l~i~~~--~~l~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~~L~i~l~R~~~~~ 262 (369)
|++++...++++.|+|+++.. ..++++++.+...+..+ +.|++|+.. .+.++.+|.++|++|+|+++||.+..
T Consensus 87 C~~~s~~~e~~~~L~L~i~~~~~~~le~l~~~~~~~~~~e----~~C~~C~~~-~a~k~~~i~~~P~vL~i~lkRf~~~~ 161 (245)
T cd02673 87 CSFEENVSDVGNFLDVSMIDNKLDIDELLISNFKTWSPIE----KDCSSCKCE-SAISSERIMTFPECLSINLKRYKLRI 161 (245)
T ss_pred CCCeeeeccccceeccccccCCcchHHHHHHHhhcccccC----ccCCCCCCc-cceeechhhhCChhhEEeeEeeeecc
Confidence 999999999999999999874 56778887777766554 799999975 67788889999999999999997644
Q ss_pred cccccccccceeecCcccccCCCCCCCCceEEEEEEEEeecCCCCCccEEEEEee---CCcEEEEeCCcceeeChhhHHh
Q 017540 263 QLGRYKKLSYRVVFPLELKLSNTAEDADIEYSLFAVVVHVGSGPNHGHYVSLVKS---HNHWLFFDDENVEMIDESAVQT 339 (369)
Q Consensus 263 ~~~~~~K~~~~v~~p~~l~l~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~~~vr~---~~~W~~~nD~~V~~v~~~~v~~ 339 (369)
......|.. .+++..+.. ...+|+|.|||+|.|.+.++|||+||+|. +++||.|||+.|+++++++|.+
T Consensus 162 ~~~~~~~~~-------~~~~~~~~~-~~~~Y~L~~VV~H~G~~~~~GHY~a~vk~~~~~~~Wy~fnD~~V~~v~~~~v~~ 233 (245)
T cd02673 162 ATSDYLKKN-------EEIMKKYCG-TDAKYSLVAVICHLGESPYDGHYIAYTKELYNGSSWLYCSDDEIRPVSKNDVST 233 (245)
T ss_pred ccccccccc-------ccccccccC-CCceEEEEEEEEECCCCCCCceEEEEEEcCCCCCeEEEeeCceeeEcCHHHHhh
Confidence 321112211 234555443 56789999999999987899999999997 5799999999999999999983
Q ss_pred hhcCcccCCCCCCceEEEEEE
Q 017540 340 FFGSAQEYSSNTDHGYILFYE 360 (369)
Q Consensus 340 ~~~~~~~~~~~~~~~y~l~Y~ 360 (369)
....+||||||+
T Consensus 234 ---------~~~~~aYiLFY~ 245 (245)
T cd02673 234 ---------NARSSGYLIFYD 245 (245)
T ss_pred ---------ccCCceEEEEEC
Confidence 125799999996
No 25
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.4e-42 Score=305.62 Aligned_cols=238 Identities=44% Similarity=0.708 Sum_probs=204.0
Q ss_pred ccccCCchhhhhHHHHHhhCChhHHHHHHhhhccCCCCCcchhhHHHHHHHHHHHHHhcccCCCccChHHHHHHHHhhcc
Q 017540 24 GLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQNE 103 (369)
Q Consensus 24 GL~N~gntCy~NsvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 103 (369)
||.|.||+||+||+||+|++
T Consensus 1 Gl~N~~n~Cy~ns~lq~l~~------------------------------------------------------------ 20 (255)
T cd02257 1 GLNNLGNTCYLNSVLQALFS------------------------------------------------------------ 20 (255)
T ss_pred CccccCcchHHhHHHHHHHH------------------------------------------------------------
Confidence 89999999999999999998
Q ss_pred ccCCCCCChHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCcCCCCCCCCCCCCCcCCccccccccccceeEeeeeeec
Q 017540 104 LFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCL 183 (369)
Q Consensus 104 ~~~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lF~~~~~~~~~C~ 183 (369)
.||||+|||..+++.|+.++...... ........+.+.++|.+.+.....|.
T Consensus 21 -----~q~Da~E~l~~ll~~l~~~~~~~~~~-----------------------~~~~~~~~~~i~~~F~~~~~~~~~c~ 72 (255)
T cd02257 21 -----EQQDAHEFLLFLLDKLHEELKKSSKR-----------------------TSDSSSLKSLIHDLFGGKLESTIVCL 72 (255)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHhhccc-----------------------ccccccCCchhhhhcccEEeeEEECC
Confidence 89999999999999999988764332 00111234679999999999999999
Q ss_pred CCCCccccccceeecCccccc----CccHHHHHHhcCccceecCCCcccccccC--CcceeeEEEecccCCceEEEEeee
Q 017540 184 RCETVTARDETFFDLSLDIEQ----NSSITSCLKNFSSTETLNAEDKFFCDKCC--SLQEAQKRMKIKKSPHTLVIHLKR 257 (369)
Q Consensus 184 ~C~~~~~~~~~~~~l~l~i~~----~~~l~~~L~~~~~~e~~~~~~~~~C~~C~--~~~~~~~~~~i~~~P~~L~i~l~R 257 (369)
.|+..+.....+..+.+++|. ..+|+++|+.++..+.+.+ ..|..|+ ......++..+.++|++|+|+++|
T Consensus 73 ~c~~~~~~~~~~~~l~l~~~~~~~~~~~l~~~l~~~~~~e~~~~---~~~~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R 149 (255)
T cd02257 73 ECGHESVSTEPELFLSLPLPVKGLPQVSLEDCLEKFFKEEILEG---DNCYKCEKKKKQEATKRLKIKKLPPVLIIHLKR 149 (255)
T ss_pred CCCCCccCcccceeEEeeccCCCCCCCcHHHHHHHhhhhhccCC---CCcccCCCCcccceeEEEecccCCceeEEEeec
Confidence 998877777777777777765 4799999999999988874 6788887 577788999999999999999999
Q ss_pred eeeeccccccccccceeecCcccccCCCCC---------CCCceEEEEEEEEeecCCCCCccEEEEEeeC--CcEEEEeC
Q 017540 258 FKYIEQLGRYKKLSYRVVFPLELKLSNTAE---------DADIEYSLFAVVVHVGSGPNHGHYVSLVKSH--NHWLFFDD 326 (369)
Q Consensus 258 ~~~~~~~~~~~K~~~~v~~p~~l~l~~~~~---------~~~~~Y~L~~vi~H~G~~~~~GHY~~~vr~~--~~W~~~nD 326 (369)
|.++.. +...|+...|.+|..+++..+.. ....+|+|+|||+|.|.+..+|||+||+|.. ++|++|||
T Consensus 150 ~~~~~~-~~~~k~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~Y~L~~vi~h~G~~~~~GHY~~~~~~~~~~~W~~~nD 228 (255)
T cd02257 150 FSFNED-GTKEKLNTKVSFPLELDLSPYLSEGEKDSDSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDPSDGKWYKFND 228 (255)
T ss_pred eeeccc-cccccCCCeEeCCCcccCccccccccccccccCCCccEEEEEEEEEecCCCCCcCeEEEEeCCCCCceEEEec
Confidence 998764 47889999999999999987754 4788999999999999977999999999994 99999999
Q ss_pred CcceeeChhhHHhhhcCcccCCCCCCceEEEEEE
Q 017540 327 ENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYE 360 (369)
Q Consensus 327 ~~V~~v~~~~v~~~~~~~~~~~~~~~~~y~l~Y~ 360 (369)
..|++++++++....+. +.+||+|||+
T Consensus 229 ~~V~~v~~~~~~~~~~~-------~~~~yll~Y~ 255 (255)
T cd02257 229 DKVTEVSEEEVLEFGSL-------SSSAYILFYE 255 (255)
T ss_pred cccEEcCHHHhhhccCC-------CCceEEEEEC
Confidence 99999999999643222 8999999996
No 26
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-43 Score=327.92 Aligned_cols=311 Identities=30% Similarity=0.496 Sum_probs=268.8
Q ss_pred CCccccccCCchhhhhHHHHHhhCChhHHHHHHhhhccCCCCCcchhhHHHHHHHHHHHHHhcccCCCccChHHHHHHHH
Q 017540 20 ERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLK 99 (369)
Q Consensus 20 ~~~~GL~N~gntCy~NsvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~l~ 99 (369)
.+.+||.|.|+|||||++||.|.+.|..++..+..............++.+++.++|+.|+.+.. ...+.|..++....
T Consensus 159 ~~l~g~~n~g~tcfmn~ilqsl~~~~~~~~~~l~~~h~~~~~~~~~~~l~~~~~~~~~~~~s~~~-~~~~sp~~~l~~~~ 237 (492)
T KOG1867|consen 159 LGLRGLRNLGSTCFMNVILQSLLHDPLSRSSFLSGIHSKEPSSSGSSCLVCDLDRLFQALYSGHN-RTPYSPFELLNLVW 237 (492)
T ss_pred ecccccccccHHHHHHHHHHHhhccchhhccchhhhcccCCCCCCCcchhhhhhhhhhHhhcCCC-CCCcChHHHHHHHH
Confidence 45889999999999999999999999988888876555455555577899999999999999874 33499999999999
Q ss_pred hhccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCcCCCCCCCCCCCCCcCCccccccccccceeEeee
Q 017540 100 KQNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNE 179 (369)
Q Consensus 100 ~~~~~~~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lF~~~~~~~ 179 (369)
...+.+.++.|||++||+..+++.++.+. +. .. .. ......+..+.+++...|.|.+...
T Consensus 238 k~~~~~~g~~Qqda~eF~~~~~~~~~~~~-~~---~~--k~--------------~~~~~~~~~c~~iv~~~F~G~L~~~ 297 (492)
T KOG1867|consen 238 KHSPNLAGYEQQDAHEFLIALLDRLHREK-DD---CG--KS--------------LIASQSNKQCPCIVHTIFSGTLQSD 297 (492)
T ss_pred HhCcccccccccchHHHHHHhcccccccc-cc---cc--cc--------------cccccCCcccccccceeecceeccc
Confidence 99999999999999999999999998876 00 00 00 0000111146789999999999999
Q ss_pred eeecCCCCccccccceeecCcccccC----------ccHHHHHHhcCccceecCCCcccccccCCcceeeEEEecccCCc
Q 017540 180 TRCLRCETVTARDETFFDLSLDIEQN----------SSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPH 249 (369)
Q Consensus 180 ~~C~~C~~~~~~~~~~~~l~l~i~~~----------~~l~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~ 249 (369)
+.|..|...++..++|+.++|++|.. .++.++++.+...+......++.|..|+......++..+..+|.
T Consensus 298 v~c~~c~~~S~~~dpf~disL~i~~~~~~~~~~~~~~~~~~cl~~~~~~~~~~~~~~~~c~~c~~~~~~~kql~~~~lP~ 377 (492)
T KOG1867|consen 298 VTCQTCGSKSTTYDPFMDISLDIPDQFTSSSVRSPELTLLDCLDRFTRSEQLGKDSKYKCSSCKSKQESTKQLTIRKLPA 377 (492)
T ss_pred eeehhhcceeeeccCccceeeecchhccCcccccchhhhhhhhhhhhhhhhcCcccccccCCcccccccccccccccCCc
Confidence 99999999999999999999999853 56899999998888877778899999999999999999999999
Q ss_pred eEEEEeeeeeeeccccccccccceeecCcccccCCCCCC--------CCceEEEEEEEEeecCCCCCccEEEEEeeCCcE
Q 017540 250 TLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTAED--------ADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHW 321 (369)
Q Consensus 250 ~L~i~l~R~~~~~~~~~~~K~~~~v~~p~~l~l~~~~~~--------~~~~Y~L~~vi~H~G~~~~~GHY~~~vr~~~~W 321 (369)
+|.++++||++....... |+.+.|.||..++|.+|... .++.|+|.|||+|+|. .++|||+||.|..+.|
T Consensus 378 ~l~~~lkRfe~~~~~~~~-ki~~~v~fp~~l~m~p~~~~~~~~~~~~~~~~Y~L~AVV~H~G~-~~SGHY~aY~r~~~~~ 455 (492)
T KOG1867|consen 378 VLCLHLKRFEHSATGARE-KIDSYVSFPVLLNMKPYCSSEKLKSQDNPDHLYELRAVVVHHGT-VGSGHYVAYRRQSGGW 455 (492)
T ss_pred eeeeeecccccccccccc-ccCcccccchhhcCCccccccccccCCCCCceEEEEEEEEeccC-CCCCceEEEEEeCCCc
Confidence 999999999998874444 99999999999999987752 5799999999999999 9999999999999999
Q ss_pred EEEeCCcceeeChhhHHhhhcCcccCCCCCCceEEEEEEEeCCC
Q 017540 322 LFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYESLGAG 365 (369)
Q Consensus 322 ~~~nD~~V~~v~~~~v~~~~~~~~~~~~~~~~~y~l~Y~r~~~~ 365 (369)
++|||+.|+.++.++|+ ..+||+|||.+....
T Consensus 456 ~~~dDs~v~~~s~~eVl------------~~~aylLFY~~~~~~ 487 (492)
T KOG1867|consen 456 FKCDDSTVTKVSEEEVL------------SSQAYLLFYTQEQVE 487 (492)
T ss_pred EEEcCeEEEEeeHHHhh------------hchhhheehhHHhhh
Confidence 99999999999999999 789999999887654
No 27
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-40 Score=294.88 Aligned_cols=291 Identities=25% Similarity=0.427 Sum_probs=239.1
Q ss_pred ccccccCCchhhhhHHHHHhhCChhHHHHHHhhh-ccCCCCCcchhhHHHHHHHHHHHHHhcccCC--CccChHHHHHHH
Q 017540 22 YFGLENFGNTCYCNSVLQALYFCVPFREQLLDYY-SNNKNLGDAEENLLTCLADLFTQIRAQKKKT--GVIAPKRFVQRL 98 (369)
Q Consensus 22 ~~GL~N~gntCy~NsvLQ~L~~~p~f~~~l~~~~-~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~--~~~~~~~~~~~l 98 (369)
++||.|+||+||++|+||.|.....+...+.... ........+..++.++|.+|...|....... .-+.|..|...+
T Consensus 303 ~~GliNlGNsCYl~SviqSlv~~~v~~~~~d~l~~~~~~~~~~P~~~l~CQl~kll~~mk~~p~~~y~ngi~p~~fk~~i 382 (749)
T COG5207 303 YVGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMKNPLECLFCQLMKLLSKMKETPDNEYVNGISPLDFKMLI 382 (749)
T ss_pred ccceEecCCeeeHHHHHHHHhccccchhhhhhhccceeeeecCCchhHHHHHHHHHhhccCCCCccccCCcChhhHHHHH
Confidence 9999999999999999999998877665554321 1111233456689999999999887755221 238899999999
Q ss_pred HhhccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCcCCCCCCCCCCCCCcCCccccccccccceeEee
Q 017540 99 KKQNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTN 178 (369)
Q Consensus 99 ~~~~~~~~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lF~~~~~~ 178 (369)
++.++.|+..+||||+|||.++|+.|...+... ..+.|.++|.+....
T Consensus 383 gq~h~eFg~~~QQDA~EFLlfLL~kirk~~~S~--------------------------------~~~~It~lf~Fe~e~ 430 (749)
T COG5207 383 GQDHPEFGKFAQQDAHEFLLFLLEKIRKGERSY--------------------------------LIPPITSLFEFEVER 430 (749)
T ss_pred cCCchhhhhhhhhhHHHHHHHHHHHHhhccchh--------------------------------cCCCcchhhhhhhcc
Confidence 999999999999999999999999997643221 335699999999999
Q ss_pred eeeecCCCCccccccceeecCccccc---CccHHHHHHhcCccceecCCCcccccccCCcceeeEEEecccCCceEEEEe
Q 017540 179 ETRCLRCETVTARDETFFDLSLDIEQ---NSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHL 255 (369)
Q Consensus 179 ~~~C~~C~~~~~~~~~~~~l~l~i~~---~~~l~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~~L~i~l 255 (369)
+..|..|+.++...++..++.+.+.. ..++.+.++.+|.+++++ |.|..|+.+..+.++..|.++|++||++.
T Consensus 431 rlsC~~C~~v~ySye~~~~i~i~le~n~E~~di~~~v~a~f~pdtiE----~~CenCk~K~~a~~k~~~kslPk~LIlq~ 506 (749)
T COG5207 431 RLSCSGCMDVSYSYESMLMICIFLEGNDEPQDIRKSVEAFFLPDTIE----WSCENCKGKKKASRKPFIKSLPKYLILQV 506 (749)
T ss_pred eecccccccccccccceEEEEeecccCcchhhHHHHHHheECcccee----eehhhhcCcccccccchhhccCceeEEec
Confidence 99999999999999988888888754 468999999999999997 99999999999999999999999999999
Q ss_pred eeeeeeccccccccccceeecCcc--cccCCCCC----------------------------------------------
Q 017540 256 KRFKYIEQLGRYKKLSYRVVFPLE--LKLSNTAE---------------------------------------------- 287 (369)
Q Consensus 256 ~R~~~~~~~~~~~K~~~~v~~p~~--l~l~~~~~---------------------------------------------- 287 (369)
.||...+. .+.|+..++.+... +++..++.
T Consensus 507 ~R~~lqny--~v~kls~pi~~~~D~m~~~~s~msk~~PqtEn~LPdedE~~t~Nqs~I~qL~~mGfp~~~~~rAL~~tgN 584 (749)
T COG5207 507 GRYSLQNY--KVEKLSDPIEMRSDDMIKLGSFMSKFDPQTENLLPDEDEAFTDNQSLIRQLVDMGFPEEDAARALGITGN 584 (749)
T ss_pred ceeeccce--eehhccCceEEccccccchhhHhhccCCcccccCCccccccCchHHHHHHHHHcCCCHHHHHHHHhhccC
Confidence 99987665 56777766666553 55555542
Q ss_pred --------------------------------------------------------------------------------
Q 017540 288 -------------------------------------------------------------------------------- 287 (369)
Q Consensus 288 -------------------------------------------------------------------------------- 287 (369)
T Consensus 585 qDaEsAMNWLFqHMdDPdlndP~~~~~~vPKkDkeVdE~~~~Slle~Gln~n~~Rkal~~~n~d~~r~V~w~~N~~D~tF 664 (749)
T COG5207 585 QDAESAMNWLFQHMDDPDLNDPFVPPPNVPKKDKEVDESKARSLLENGLNPNLCRKALMDMNTDSKRRVVWCINDDDGTF 664 (749)
T ss_pred cchHHHHHHHHhhccCcccCCCCCCCCCCCcccccccHHHHHHHHHcCCCHHHHHHHHHHccCCchheEEEEEeCCCCCC
Confidence
Q ss_pred ------------------CCCceEEEEEEEEeecCCCCCccEEEEEee----CCcEEEEeCCcceeeChhhHHhhhcCcc
Q 017540 288 ------------------DADIEYSLFAVVVHVGSGPNHGHYVSLVKS----HNHWLFFDDENVEMIDESAVQTFFGSAQ 345 (369)
Q Consensus 288 ------------------~~~~~Y~L~~vi~H~G~~~~~GHY~~~vr~----~~~W~~~nD~~V~~v~~~~v~~~~~~~~ 345 (369)
.....|.|.|||+|.|+++.+|||++|+|+ .-+|.++||+++.-++.-|++
T Consensus 665 ~EP~v~~eeqqqk~~~~~STa~PYaLtAvI~HkG~s~haGHYv~fIrk~~~~K~kWvl~nDek~v~~~svE~~------- 737 (749)
T COG5207 665 PEPEVPNEEQQQKKDLGYSTAKPYALTAVICHKGDSIHAGHYVWFIRKNGKDKWKWVLKNDEKTVLNSSVEVL------- 737 (749)
T ss_pred CCCCCCchhhhhcccccccccCcccceeEEeccCCcccccceEEEEecccCcceeEEEEccchheehhhHHHH-------
Confidence 124459999999999999999999999998 347999999999888777776
Q ss_pred cCCCCCCceEEEEEEEe
Q 017540 346 EYSSNTDHGYILFYESL 362 (369)
Q Consensus 346 ~~~~~~~~~y~l~Y~r~ 362 (369)
..++|++||+|.
T Consensus 738 -----k~nGYiylf~R~ 749 (749)
T COG5207 738 -----KDNGYIYLFKRC 749 (749)
T ss_pred -----hhCCeEEEEecC
Confidence 579999999983
No 28
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.5e-42 Score=313.00 Aligned_cols=283 Identities=24% Similarity=0.448 Sum_probs=244.4
Q ss_pred CccccccCCchhhhhHHHHHhhCChhHHHHHHhhhccCCCCCcchhhHHHHHHHHHHHHHhcccCCCccChHHHHHHHHh
Q 017540 21 RYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKK 100 (369)
Q Consensus 21 ~~~GL~N~gntCy~NsvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 100 (369)
+++||.|.--|||+|+.+|+|+-.|+|++.+...+ + ..+.+..+.+.++
T Consensus 86 ~yvglvnqa~~~~l~~~~~a~~~~~~~~~~~yts~----------------------------~--~~~et~dlt~sfg- 134 (1203)
T KOG4598|consen 86 RYVGLVNQASNDLLFEQSCAISLHDSGISKCYTSE----------------------------N--DSLETKDLTQSFG- 134 (1203)
T ss_pred ceEeehhhHHHHHHHHHhhhhccChhhhhhhhCCC----------------------------c--ccccchhhHhhcC-
Confidence 49999999999999999999999999999887411 1 1144445444443
Q ss_pred hccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCcCCCCCCCCCCCCCcCCccccccccccceeEeeee
Q 017540 101 QNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNET 180 (369)
Q Consensus 101 ~~~~~~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lF~~~~~~~~ 180 (369)
+..-..++|+|.+|+-...++.|+--+. ......+|.+++.|....-+
T Consensus 135 -w~s~ea~~qhdiqelcr~mfdalehk~k-------------------------------~t~~~~li~~ly~g~m~d~v 182 (1203)
T KOG4598|consen 135 -WTSNEAYDQHDVQELCRLMFDALEHKWK-------------------------------GTEHEKLIQDLYRGTMEDFV 182 (1203)
T ss_pred -CCcchhhhhhhHHHHHHHHHHHHHhhhc-------------------------------CchHHHHHHHHhcchHHHHH
Confidence 1223467899999999999999865433 33345779999999999999
Q ss_pred eecCCCCccccccceeecCccccc------CccHHHHHHhcCccceecCCCcccccccCCcceeeEEEecccCCceEEEE
Q 017540 181 RCLRCETVTARDETFFDLSLDIEQ------NSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIH 254 (369)
Q Consensus 181 ~C~~C~~~~~~~~~~~~l~l~i~~------~~~l~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~~L~i~ 254 (369)
.|.+|+.++++.+.|..|.|++.+ -.+++++|..|..+|+++|.+.|.|++|+++..+.+..+|.++|=+|.|+
T Consensus 183 ~cl~c~~e~~~~d~fld~pl~v~pfg~~~ay~sieeal~afvqpe~ldg~nqy~ce~ck~k~dahkgl~~~~fpy~lt~~ 262 (1203)
T KOG4598|consen 183 ACLKCGRESVKTDYFLDLPLAVKPFGAIHAYKSVEEALTAFVQPELLDGSNQYMCENCKSKQDAHKGLRITQFPYLLTIQ 262 (1203)
T ss_pred HHHHcCccccccceeecccccccCCcchhhhhhHHHHHHHhcChhhcCCccHHHHhhhhhhhhhhcCceeeccceeeEEe
Confidence 999999999999999999999865 35899999999999999999999999999999999999999999999999
Q ss_pred eeeeeeeccccccccccceeecCcccccCCCCC-----------------------------------------------
Q 017540 255 LKRFKYIEQLGRYKKLSYRVVFPLELKLSNTAE----------------------------------------------- 287 (369)
Q Consensus 255 l~R~~~~~~~~~~~K~~~~v~~p~~l~l~~~~~----------------------------------------------- 287 (369)
++||.++.+++-.+|++.++.||..|++..|++
T Consensus 263 lkrfdfdy~tmhriklnd~~tfp~~l~ln~~in~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~s~~~~~ 342 (1203)
T KOG4598|consen 263 LKRFDFDYNTMHRIKLNDKMTFPDVLDLNDYVNKEKRSTTSSAWQQIGKNKSENEEDDMELGSPNPKRCTPGVQSPNRYQ 342 (1203)
T ss_pred eecccccchheeeeeecccccCcccccHHHhhhhccCCcchhHhhhcccccccccccccccCCCCcccCcccccCccccc
Confidence 999999999999999999999999999998874
Q ss_pred ----------------------CCCceEEEEEEEEeecCCCCCccEEEEEee--CCcEEEEeCCcceeeChhhHHhhhcC
Q 017540 288 ----------------------DADIEYSLFAVVVHVGSGPNHGHYVSLVKS--HNHWLFFDDENVEMIDESAVQTFFGS 343 (369)
Q Consensus 288 ----------------------~~~~~Y~L~~vi~H~G~~~~~GHY~~~vr~--~~~W~~~nD~~V~~v~~~~v~~~~~~ 343 (369)
.++..|+|+||++|.|. ..+|||+||+++ +++||.|||.+|+.++.+++.+-+||
T Consensus 343 ~~~n~~~g~~~~~~~~~~~~~~sg~~~yelf~imihsg~-a~gghy~ayik~~d~~~w~~fnd~~v~~~t~~~i~~sfgg 421 (1203)
T KOG4598|consen 343 GSENVCVGQPIDHAAVDDIVKTSGDNVYELFSVMVHSGN-AAGGHYFAYIKNLDQDRWYVFNDTRVDFATPLEIEKSFGG 421 (1203)
T ss_pred CccccccCCcCchhhhhhHhhcCCccHHHhhhhheecCC-CCCceeeeeecccCcCceEEecCccccccCHHHHHHhhCC
Confidence 25788999999999999 899999999998 89999999999999999999999887
Q ss_pred cccC-CCCCCceEEEEEEEeCCCCC
Q 017540 344 AQEY-SSNTDHGYILFYESLGAGSN 367 (369)
Q Consensus 344 ~~~~-~~~~~~~y~l~Y~r~~~~~~ 367 (369)
..+. -..+.+||||+|+|+|.+.|
T Consensus 422 ~~~~~~~s~tnaymlmyr~id~krn 446 (1203)
T KOG4598|consen 422 HPSGWNQSNTNAYMLMYRRIDPKRN 446 (1203)
T ss_pred CCCCccccCcchhhhhhhhcCcccc
Confidence 5322 13467899999999998876
No 29
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-40 Score=306.51 Aligned_cols=326 Identities=29% Similarity=0.473 Sum_probs=244.7
Q ss_pred CCCCccccccCCchhhhhHHHHHhhCChhHHHHHHhhhccCC-----C-----------CCcchhhHHHHHHHHHHHHHh
Q 017540 18 EGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNK-----N-----------LGDAEENLLTCLADLFTQIRA 81 (369)
Q Consensus 18 ~~~~~~GL~N~gntCy~NsvLQ~L~~~p~f~~~l~~~~~~~~-----~-----------~~~~~~~~~~~l~~l~~~l~~ 81 (369)
.+...+||.|+|||||+|||+|.|..+|.+++.|........ . ......++..+|..|. .|
T Consensus 201 ~~~~VrGL~NLGNTCFFNavMQnL~qt~~L~d~l~e~~~Sgt~v~I~~~~~s~l~~L~~el~~~g~lt~al~~~~-e~-- 277 (877)
T KOG1873|consen 201 RGYIVRGLTNLGNTCFFNAVMQNLAQTPALRDVLKEEKESGTSVKIRPPLDSSLSPLFSELSSPGPLTYALANLL-EM-- 277 (877)
T ss_pred ccccccccccccchhhHHHHHHHHhhcHHHHHHHHhhccCCceeEecCccccchhhHHHhccCCcchhHHHHhhh-hh--
Confidence 345689999999999999999999999999999997543321 0 0011223334444422 22
Q ss_pred cccCCCccChHHHHHHHHhhccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhC--CCCCCCCCCCcCC-CCCCCCCCCC
Q 017540 82 QKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAK--SDPESSSPSEKTA-NGPTNGLANG 158 (369)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~ 158 (369)
.+....++.|+.|+..+....+.|.++.|||++|+|..||+.|..|........ ...++....-... ..+...-..+
T Consensus 278 ~e~~ksv~~Pr~lF~~~C~k~pqF~g~~QhDsHELLR~LLD~l~~EE~~~~kk~Il~~fG~~t~~l~scle~~q~sKvYe 357 (877)
T KOG1873|consen 278 SETTKSVITPRTLFGQFCSKAPQFRGYDQHDSHELLRCLLDSLRSEESRRRKKNILSNFGGETSSLVSCLECGQKSKVYE 357 (877)
T ss_pred hhccCCccCHHHHHHHHHHhCCcccccccccHHHHHHHHHHhhhHHHHHHHHHhHHHhhCccccchhhhhhccchhhccc
Confidence 334556699999999999999999999999999999999999986654432222 1111111000000 0011111111
Q ss_pred CcCCccccccccccceeEeeeeeecCCCCccccccceeecCcccccC---------------------------------
Q 017540 159 VRKEPLVTWVHKNFQGILTNETRCLRCETVTARDETFFDLSLDIEQN--------------------------------- 205 (369)
Q Consensus 159 ~~~~~~~~~i~~lF~~~~~~~~~C~~C~~~~~~~~~~~~l~l~i~~~--------------------------------- 205 (369)
.+ .....+...+|.+...+.+.|..|. ++..++.|...++++-..
T Consensus 358 ~f-~~~~~~vp~~~~~~~~s~~~~~~~~-vss~~~s~~~~t~pv~~~~~~~qs~~~s~~~~~tsd~sd~spst~~~t~n~ 435 (877)
T KOG1873|consen 358 PF-KDLSLPVPLSFNGPLTSQIECQACD-VSSVHESFLSETLPVLPSQSLSQSSDSSQHLHLTSDSSDTSPSTEAPTKNL 435 (877)
T ss_pred cc-ccCCcccccccCCCcccchhhhccc-eeccchhhcccccccccCccccccCCCcccceeccccccCCccccCcccCc
Confidence 11 1133456688999999999999998 666778888877776110
Q ss_pred --------------------------------------------------------------------------------
Q 017540 206 -------------------------------------------------------------------------------- 205 (369)
Q Consensus 206 -------------------------------------------------------------------------------- 205 (369)
T Consensus 436 ~~~e~~~~~t~dn~~~~k~qS~~~~~~S~~~~~~~k~~a~s~n~n~~~~g~~~~~a~~v~~~~~~~~p~gD~e~s~Ad~~ 515 (877)
T KOG1873|consen 436 PSSELLDSLTDDNDQVFKGQSDVAGTNSKEDQNKAKNQAKSQNLNEASQGKDNEKALQVNDRQLDILPLGDGELSKADMS 515 (877)
T ss_pred ccccccccccccCchhhccccccccCccccccchhhhhhhhhccccccccccchhhhhhchhhccccccCcccccccccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 017540 206 -------------------------------------------------------------------------------- 205 (369)
Q Consensus 206 -------------------------------------------------------------------------------- 205 (369)
T Consensus 516 lde~n~~~~sss~~~~~~~~~~~s~v~~~s~~ed~n~~~~~~~~~~~a~~Ss~~~d~~~~~~~v~~S~~s~sp~~se~~~ 595 (877)
T KOG1873|consen 516 LDEANMDEFSSSLEKGIFRGRSTSEVSQASCNEDCNDPEPIQDGSGEASSSSSSVDREHNNHRVARSRFSRSPKKSEVKI 595 (877)
T ss_pred cccccccccccccCCcccCCccHHHhhhhhhhcccCCcccccCCCCcccCCCcccccccccchhhhhhhcCCCcccceee
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 017540 206 -------------------------------------------------------------------------------- 205 (369)
Q Consensus 206 -------------------------------------------------------------------------------- 205 (369)
T Consensus 596 vs~n~~~~g~~g~~~~Sssf~~g~~~g~~~d~d~~~~e~~~~~~T~~~~~~g~~s~~kvs~~~f~a~~S~s~~~~~~~~D 675 (877)
T KOG1873|consen 596 VSGNDKTVGDQGETENSSSFNEGDLNGHASDNDEFLIEIPDDKLTRELPVFGPPSKAKVSEQGFDAFSSISDPEVLDSSD 675 (877)
T ss_pred eccccccccccceeeechhhhccCccccccchHHhhhcCcccCCCccccccCCCccceeccCCccccccccChhhccCCC
Confidence
Q ss_pred --ccHHHHHHhcCccceecCCCcccccccCCc---------------------------ceeeEEEecccCCceEEEEee
Q 017540 206 --SSITSCLKNFSSTETLNAEDKFFCDKCCSL---------------------------QEAQKRMKIKKSPHTLVIHLK 256 (369)
Q Consensus 206 --~~l~~~L~~~~~~e~~~~~~~~~C~~C~~~---------------------------~~~~~~~~i~~~P~~L~i~l~ 256 (369)
.+++.+|..|.+.|.+.|+|++.|++|.+. ..+.++..|..+|++|+|+++
T Consensus 676 ~p~Svq~CL~nFT~~E~Ls~~N~~~CEnCtk~~n~~~r~k~~~n~~~sk~s~~es~~~~t~akk~~li~~aPpVltihlK 755 (877)
T KOG1873|consen 676 EPCSVQRCLKNFTKVEILSGDNKWACENCTKNLNLQRREKRGLNEDNSKYSFNESEYRNTYAKKKVLINKAPPVLTIHLK 755 (877)
T ss_pred CCccHHHHHHhhhhhhhcccccchhhhhhhccccccchhhccCCCCcccccccchhhhhhhhheeeecccCCceeeehHh
Confidence 489999999999999999999999999751 113567788999999999999
Q ss_pred eeeeeccccccccccceeecCcccccCCCCCC--------CCceEEEEEEEEeecCCCCCccEEEEEee-----------
Q 017540 257 RFKYIEQLGRYKKLSYRVVFPLELKLSNTAED--------ADIEYSLFAVVVHVGSGPNHGHYVSLVKS----------- 317 (369)
Q Consensus 257 R~~~~~~~~~~~K~~~~v~~p~~l~l~~~~~~--------~~~~Y~L~~vi~H~G~~~~~GHY~~~vr~----------- 317 (369)
||..+.. +++.|.+.++.|+..+|+..|++. ..+.|+|.|+|.|.|+ +..|||++|+|.
T Consensus 756 rf~q~~~-~~~~k~~~h~~f~E~~dL~~~~~~rc~~l~~~~s~~Yrl~gvvehsgt-m~~ghyvayv~~~t~~~~~~~~~ 833 (877)
T KOG1873|consen 756 RFFQDIR-GRLSKLNKHVDFKEFEDLLDYMDFRCSHLDEPSSFVYRLAGVVEHSGT-MSYGHYVAYVRGGTFLDLSAPSN 833 (877)
T ss_pred hhhhhhh-chhhcccccchHHHHHHHHHHhhhhccccCCcchhhhhhccceecccc-ccCCcchhhhhccchhhccCccc
Confidence 9976654 669999999999999999988852 4668999999999999 999999999983
Q ss_pred -----------CCcEEEEeCCcceeeChhhHHhhhcCcccCCCCCCceEEEEEEEe
Q 017540 318 -----------HNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYESL 362 (369)
Q Consensus 318 -----------~~~W~~~nD~~V~~v~~~~v~~~~~~~~~~~~~~~~~y~l~Y~r~ 362 (369)
.++||...|..|+++++++|+ ..+||||||+|.
T Consensus 834 ~~~~~sd~~~~~~~Wy~iSDs~VrevS~d~vL------------kseAYlLFYERI 877 (877)
T KOG1873|consen 834 SKDFESDAGIPSGRWYYISDSIVREVSLDEVL------------KSEAYLLFYERI 877 (877)
T ss_pred cccchhccCCCCcceEEecchheecccHHHHh------------hhhhhhhheecC
Confidence 358999999999999999999 689999999995
No 30
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=100.00 E-value=2.1e-38 Score=284.82 Aligned_cols=277 Identities=27% Similarity=0.386 Sum_probs=235.7
Q ss_pred cccccCCchhhhhHHHHHhhCChhHHHHHHhhhccCCCCCcchhhHHHHHHHHHHHHH-hcccCCCccChHHHHHHHHhh
Q 017540 23 FGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIR-AQKKKTGVIAPKRFVQRLKKQ 101 (369)
Q Consensus 23 ~GL~N~gntCy~NsvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~-~~~~~~~~~~~~~~~~~l~~~ 101 (369)
+||.|.+++||+||+||+|+++|++|+.++.+. .+..+.+++++|+.||++|. .+.+.. +.+.+|+++++..
T Consensus 1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h~-----~c~~e~cL~cELgfLf~ml~~~~~g~~--cq~sNflr~l~~~ 73 (295)
T PF13423_consen 1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSHL-----ECPKEFCLLCELGFLFDMLDSKAKGIN--CQASNFLRALSWI 73 (295)
T ss_pred CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhCc-----CCCccccHHHHHHHHHHHhhhhcCCCc--ChHHHHHHHHhcC
Confidence 599999999999999999999999999999986 26778899999999999999 655444 8899999999887
Q ss_pred ccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCcCCCCCCCCCCCCCcCCccccccccccceeEeeeee
Q 017540 102 NELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETR 181 (369)
Q Consensus 102 ~~~~~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lF~~~~~~~~~ 181 (369)
......+.|+|.++|+.+|+++|+.++......... ..........+.|.++|........+
T Consensus 74 ~~a~~l~~~~~iq~~~~Fll~~l~~~~~~~~~~~~~------------------~~~~~~~~~~~~i~~~f~~~~~~~~~ 135 (295)
T PF13423_consen 74 PEAAALGLQQDIQSLNRFLLEQLSMELLTFKPDIFH------------------TSENSSSSPESSISQLFGTSFETTIR 135 (295)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHhHHHHhcCccccc------------------ccccccCCCcchHHHHhCcceeeeec
Confidence 766667779999999999999999988775432110 01111122446799999999999999
Q ss_pred ecCCCCccccccceeecCccccc---CccHHHHHHhcCccceecCCCcccccccCCcceeeEEEecccCCceEEEEeeee
Q 017540 182 CLRCETVTARDETFFDLSLDIEQ---NSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRF 258 (369)
Q Consensus 182 C~~C~~~~~~~~~~~~l~l~i~~---~~~l~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~~L~i~l~R~ 258 (369)
|..|+.+..+.+....+.+..|. ..++.+.|+.++..+.... ..|++|++......+..+.++|++|.|+++|.
T Consensus 136 c~~c~~~~~~~~~~~~~~l~yp~~~~~~tf~~~Le~sl~~e~~~~---a~C~~C~~~~~~~~~r~i~~LPpVL~In~~~~ 212 (295)
T PF13423_consen 136 CTSCGHESVKESSTLVLDLPYPPSNSNVTFSQVLEHSLNREQQTR---AWCEKCNKYQPTEQRRTIRSLPPVLSINLNRY 212 (295)
T ss_pred ccccCCeEEeecceeeeeccCCCCCccchHHHHHHHHHhhccccc---ccccccccccceeeeeeccCCCcEEEEEccCC
Confidence 99999999999988888888876 5699999999999888763 78999999999999999999999999999998
Q ss_pred eeeccccccccccceeecCcccccCCCC----------CCCCceEEEEEEEEeecCCCCCccEEEEEeeC----CcEEEE
Q 017540 259 KYIEQLGRYKKLSYRVVFPLELKLSNTA----------EDADIEYSLFAVVVHVGSGPNHGHYVSLVKSH----NHWLFF 324 (369)
Q Consensus 259 ~~~~~~~~~~K~~~~v~~p~~l~l~~~~----------~~~~~~Y~L~~vi~H~G~~~~~GHY~~~vr~~----~~W~~~ 324 (369)
..+.. ...|....+.+|..+.+..++ ..+..+|+|.|+|+|+|++..+||||++||.. ++||+|
T Consensus 213 ~~~~~--w~~~~~~~~~ip~~i~~~~~~~~~~~~~~~~~~~~~~Y~L~~~V~~i~~~~~~~HlVs~vrv~~~~~~~W~lF 290 (295)
T PF13423_consen 213 SEEEF--WPKKNWLKIWIPPSINLPHFIADDSQSDLEGESGIFKYELRSMVCHIGDSIESGHLVSLVRVGPSDDSQWYLF 290 (295)
T ss_pred Ccccc--cccccCCceecceeeeccccccccccccccCCCCceEEEEEEEEEEecCCCCCCceEEEEEcCCCCCCcEEEE
Confidence 87732 378888899999988777665 33678999999999999999999999999983 799999
Q ss_pred eCCcc
Q 017540 325 DDENV 329 (369)
Q Consensus 325 nD~~V 329 (369)
||..|
T Consensus 291 NDflV 295 (295)
T PF13423_consen 291 NDFLV 295 (295)
T ss_pred CcEeC
Confidence 99765
No 31
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.5e-39 Score=281.99 Aligned_cols=234 Identities=28% Similarity=0.407 Sum_probs=188.5
Q ss_pred CCCccccccCCchhhhhHHHHHhhCChhHHHHHHhhhccCCCCCcchhhHHHHHHHHHHHHHhcccCCCccChHHHHHHH
Q 017540 19 GERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRL 98 (369)
Q Consensus 19 ~~~~~GL~N~gntCy~NsvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~l 98 (369)
.+.++||.|.+.|||+||+||+|+++|+||+.+ .+. ......+.+++++|+.||. .+
T Consensus 12 ~t~~~gl~~~~~~~y~n~~lq~~~~~~~~~~~~-~~~---~~~~~~~~~l~~el~~lfs---------------~~---- 68 (268)
T cd02672 12 KTNYAGLENHITNSYCNSLLQLLYFIPPFRNFT-AII---LVACPKESCLLCELGYLFS---------------TL---- 68 (268)
T ss_pred cccccccccCCccchHHHHHHHHHhcHHHHHHH-Hhh---cccCCcCccHHHHHHHHHH---------------HH----
Confidence 366999999999999999999999999999983 322 2346678899999999991 11
Q ss_pred HhhccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCcCCCCCCCCCCCCCcCCccccccccccceeEee
Q 017540 99 KKQNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTN 178 (369)
Q Consensus 99 ~~~~~~~~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lF~~~~~~ 178 (369)
.+-|-.++++++..+.... +
T Consensus 69 --------------iq~F~~fll~~i~~~~~~~----------------------------------------~------ 88 (268)
T cd02672 69 --------------IQNFTRFLLETISQDQLGT----------------------------------------P------ 88 (268)
T ss_pred --------------HHHHHHHHHHHHHHHhccc----------------------------------------C------
Confidence 1335566777776443110 1
Q ss_pred eeeecCCCCccccccceeecCccccc-----CccHHHHHHhcCccceecCCCcccccccCCcceeeEEEecccCCc----
Q 017540 179 ETRCLRCETVTARDETFFDLSLDIEQ-----NSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPH---- 249 (369)
Q Consensus 179 ~~~C~~C~~~~~~~~~~~~l~l~i~~-----~~~l~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~---- 249 (369)
..|++++...+++..|+|++|. ..+|.++|+.++..|.. +.+.|++|++...+.++..|.++|+
T Consensus 89 ----~~C~~~s~~~~~~~~LsLpip~~~~~~~~sl~~cL~~~~~~E~~---~~~~C~~C~~~~~a~k~~~i~~lP~~L~~ 161 (268)
T cd02672 89 ----FSCGTSRNSVSLLYTLSLPLGSTKTSKESTFLQLLKRSLDLEKV---TKAWCDTCCKYQPLEQTTSIRHLPDILLL 161 (268)
T ss_pred ----CCCCceeeccccceeeeeecCccccccCCCHHHHHHHHhhhhhc---ccccccccCcccccEEEEEeecCCCcccc
Confidence 5689999999999999999985 45999999999998855 3588999999999999999999999
Q ss_pred eEEEEeeeeeeeccc-----cccccccceeecCcccccCCCCC---CCCceEEEEEEEEeecCCCCCccEEEEEee----
Q 017540 250 TLVIHLKRFKYIEQL-----GRYKKLSYRVVFPLELKLSNTAE---DADIEYSLFAVVVHVGSGPNHGHYVSLVKS---- 317 (369)
Q Consensus 250 ~L~i~l~R~~~~~~~-----~~~~K~~~~v~~p~~l~l~~~~~---~~~~~Y~L~~vi~H~G~~~~~GHY~~~vr~---- 317 (369)
+|+|+++||...... ....|+...|.+|..+++..... ....+|+|+|||+|+|.+.++|||+||+|.
T Consensus 162 VL~i~lkrf~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~Y~L~gvV~hig~~~~~GHyva~vk~~~~~ 241 (268)
T cd02672 162 VLVINLSVTNGEFDDINVVLPSGKVMQNKVSPKAIDHDKLVKNRGQESIYKYELVGYVCEINDSSRGQHNVVFVIKVNEE 241 (268)
T ss_pred eEEEEEeccChhhcccCcceeEEEecCCeecccccccchhhhccCCCCCceEEEEEEEEEecCCCCCCcEEEEEEccCCC
Confidence 999999999854321 22457778999998766544332 345789999999999986699999999998
Q ss_pred --CCcEEEEeCCcceeeChhhHHhhhcCcccCCCCCCceEEEEEE
Q 017540 318 --HNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYE 360 (369)
Q Consensus 318 --~~~W~~~nD~~V~~v~~~~v~~~~~~~~~~~~~~~~~y~l~Y~ 360 (369)
+++||+|||..|+++++ .||||||+
T Consensus 242 ~~~~~WylFND~~V~~vs~------------------~aYiLfY~ 268 (268)
T cd02672 242 STHGRWYLFNDFLVTPVSE------------------LAYILLYQ 268 (268)
T ss_pred CCCCcEEEecCeEEEEcCc------------------hheeeecC
Confidence 57899999999999877 68999995
No 32
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-39 Score=327.10 Aligned_cols=305 Identities=28% Similarity=0.463 Sum_probs=266.4
Q ss_pred ccccccCCchhhhhHHHHHhhCChhHHHHHHhhhccCCCCCcchhhHHHHHHHHHHHHHhcccCCCccChHHHHHHHHhh
Q 017540 22 YFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQ 101 (369)
Q Consensus 22 ~~GL~N~gntCy~NsvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~l~~~ 101 (369)
++||.|.||||||||+||.|+.++.||+.+...+.. .....+...+..+|++||..|.....+. +++.++...++..
T Consensus 170 ~vGL~N~GaTCY~NsllQ~lf~~~~FR~~Vy~~~~~-~~~~~~~~~v~~~lq~lF~~LQ~s~~k~--Vdt~~~~~~~~~~ 246 (1093)
T KOG1863|consen 170 PVGLKNLGATCYVNSLLQVLFLIPEFRRAVYSIPPF-TGHEDPRRSIPLALQRLFYELQMSKRKY--VDTSELTKSLGWD 246 (1093)
T ss_pred CccccCCCceeeehHHHHHHHccHHHHHHHhcCCCC-CCcccccchHHHHHHHHHHHHhhcCCCC--cCchhhhhhhhcc
Confidence 599999999999999999999999999999998641 2233344458999999999999987655 9999999988765
Q ss_pred ccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCcCCCCCCCCCCCCCcCCccccccccccceeEeeeee
Q 017540 102 NELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETR 181 (369)
Q Consensus 102 ~~~~~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lF~~~~~~~~~ 181 (369)
. .....|||++||...+++.|++.+..... ...+.++|.|.....+.
T Consensus 247 ~--~~~~~QqDvqEf~~~l~d~LE~~~~~~~~-------------------------------~~~l~~lf~g~~~~~i~ 293 (1093)
T KOG1863|consen 247 S--NDSFEQQDVQEFLTKLLDWLEDSMIDAKV-------------------------------ENTLQDLFTGKMKSVIK 293 (1093)
T ss_pred c--ccHHhhhhHHHHHHHHHHHHHhhccchhh-------------------------------hhhhhhhhcCCcceEEE
Confidence 4 55679999999999999999987765531 24599999999999999
Q ss_pred ecCCCCccccccceeecCcccccCccHHHHHHhcCccceecCCCcccccccCCcceeeEEEecccCCceEEEEeeeeeee
Q 017540 182 CLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYI 261 (369)
Q Consensus 182 C~~C~~~~~~~~~~~~l~l~i~~~~~l~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~~L~i~l~R~~~~ 261 (369)
|..|...+...+.|+.+.+.+....++.+.|+.|+..|.+.|++. .|..|.....+.+...+.++|++|.|++.||.++
T Consensus 294 c~~~~~~s~r~e~f~d~ql~~~g~~nl~~sf~~y~~~E~l~gdn~-~~~~~~~~~~a~k~~~f~~lPpvl~~qL~Rf~~~ 372 (1093)
T KOG1863|consen 294 CIDVDFESSRSESFLDLQLNGKGVKNLEDSLHLYFEAEILLGDNK-YDAECHGLQDAKKGVLFDSLPPVLFIQLMRFEYD 372 (1093)
T ss_pred EEeeeeeccccccccCccccccchhhHHHHHHHhhhHHHhcCCcc-ccccccchhhhhcceeeccCCchhhhhhhheeee
Confidence 999999999999999999999999999999999999999999987 8999999999999999999999999999999999
Q ss_pred ccccccccccceeecCcccccCCCCCC-------CCceEEEEEEEEeecCCCCCccEEEEEee--CCcEEEEeCCcceee
Q 017540 262 EQLGRYKKLSYRVVFPLELKLSNTAED-------ADIEYSLFAVVVHVGSGPNHGHYVSLVKS--HNHWLFFDDENVEMI 332 (369)
Q Consensus 262 ~~~~~~~K~~~~v~~p~~l~l~~~~~~-------~~~~Y~L~~vi~H~G~~~~~GHY~~~vr~--~~~W~~~nD~~V~~v 332 (369)
..++...|+...+.||..|+|..++.. ..+.|+|.||.+|.|. ..+|||++|++. .++|++|||..|..+
T Consensus 373 ~~~~~~~Ki~d~~~fp~~i~~d~~~~~~~~~~~~~~~~y~l~~v~vh~g~-~~~ghy~~~i~~~~~~~w~kfdd~~v~~~ 451 (1093)
T KOG1863|consen 373 FSTGQKIKINDKFEFPLIIDMDRYLSRFKAEESERSAVYSLHAVLVHSGD-AHSGHYVAYINPKLDGKWVKFDDLVVTVV 451 (1093)
T ss_pred ccCCceeehhhccCCccccccchhccccchhhhhccceeccchhhccccc-ccCccceeeecchhhccceeccCceeeec
Confidence 999999999999999999999999652 2359999999999887 899999999995 899999999999999
Q ss_pred ChhhHHhhhcCcccCCCCCCc------eEEEEEEEeCCCC
Q 017540 333 DESAVQTFFGSAQEYSSNTDH------GYILFYESLGAGS 366 (369)
Q Consensus 333 ~~~~v~~~~~~~~~~~~~~~~------~y~l~Y~r~~~~~ 366 (369)
+..++++...|+.+.- ... ||+++|.|.+..+
T Consensus 452 ~~~~~l~~~~g~~~~~--~~~~~~~~~~~~lv~~~~s~~~ 489 (1093)
T KOG1863|consen 452 SEKEALEQNYGTEEIE--LSSTADFKNAYMLVYIRDSCES 489 (1093)
T ss_pred cHHHHHHhhCCCcchh--hhcccccCCcceEEEEecCcHH
Confidence 9888886644433321 222 8999999988654
No 33
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-39 Score=319.54 Aligned_cols=328 Identities=30% Similarity=0.525 Sum_probs=279.6
Q ss_pred CCCCCCCccccccCCchhhhhHHHHHhhCChhHHHHHHhhhcc----CCCCCcchhhHHHHHHHHHHHHHhcccCCCccC
Q 017540 15 QFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSN----NKNLGDAEENLLTCLADLFTQIRAQKKKTGVIA 90 (369)
Q Consensus 15 ~~~~~~~~~GL~N~gntCy~NsvLQ~L~~~p~f~~~l~~~~~~----~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ 90 (369)
..+..++.+||.|+|||||||+.+|+|.+.+.+++.++..... ..........+...+..+...+|..... .+.
T Consensus 239 ~~~~~~g~~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~~~~~ein~~n~~~~~~~~~~~~~~l~~~~~s~~~~--~v~ 316 (842)
T KOG1870|consen 239 SSPSERGETGLSNLGNTCFMNSALQCLSNTPELLEYFLSDLYDREINESNPLGSAGEVASSFADLIKQLWSGNKS--AVA 316 (842)
T ss_pred cCCCcccccccccCCccccchhhhhhhccCcchhHHHHhHhhHhhhcccCCCcccceechhhhhHHHHhccCCcc--ccC
Confidence 4566677999999999999999999999999999999864322 2344556667888999999999998764 499
Q ss_pred hHHHHHHHHhhccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCcCCCCCCC--CCCCCCcCCcccccc
Q 017540 91 PKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTN--GLANGVRKEPLVTWV 168 (369)
Q Consensus 91 ~~~~~~~l~~~~~~~~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i 168 (369)
+..+...++...+.|.+..|+|.+||+.++++.+|+.+...... +.....+........ ...+........+.+
T Consensus 317 ~~~~~~~~~~~a~~~~g~~q~d~~E~lafllDglhedl~~~~~k----py~~~~d~~~rp~~~~~~~~~~~~~~~~~s~i 392 (842)
T KOG1870|consen 317 PTSFRTSLASFASEFSGYGQQDSQELLAFLLDGLHEDLNRVSSK----PYVEGKDSDLRPDQEVAAEVWDYHLKRNRSVI 392 (842)
T ss_pred chhhhhhhhhccccccCcccccchhhhhHHhhhhhHHhhccCCc----CcccccccccchhhhhhHHHHHhhhhhcccee
Confidence 99999999999999999999999999999999999988775444 111111111111111 112333445577899
Q ss_pred ccccceeEeeeeeecCCCCccccccceeecCcccccC-------------------------------------------
Q 017540 169 HKNFQGILTNETRCLRCETVTARDETFFDLSLDIEQN------------------------------------------- 205 (369)
Q Consensus 169 ~~lF~~~~~~~~~C~~C~~~~~~~~~~~~l~l~i~~~------------------------------------------- 205 (369)
.++|.+.+.+...|..|+++++..++|..|++++|..
T Consensus 393 ~d~~~~~~~S~~~c~~C~~~svt~d~f~~Lslp~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~~~ 472 (842)
T KOG1870|consen 393 VDLFDGTYKSTLQCPTCGKVSVTFDPFGYLSLPLPGKEIQKLEVTVPHGDGFRKPGALGVSVAKNGRIRDLLEYLSRTVG 472 (842)
T ss_pred eeeecceecccccCccCCCceEEeeccccccccCCCCcccceeEEEecCCCCCChhheeeeccccchHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999998732
Q ss_pred --------------------------------------------------------------------------------
Q 017540 206 -------------------------------------------------------------------------------- 205 (369)
Q Consensus 206 -------------------------------------------------------------------------------- 205 (369)
T Consensus 473 ~~~~~l~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~p 552 (842)
T KOG1870|consen 473 LLSWELKPVEILFDCFNKIFAADELKLDSIYSDEELFDYELGVLKVQGSIYAIIVVRFRSRLPRSKGIRSHVSSKLFGLP 552 (842)
T ss_pred cchhhcccceeccchhhhhhccCccccccccCCcceEEeecccccccccceEEEEEeeccccccccCcccCCCccccCCc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 017540 206 -------------------------------------------------------------------------------- 205 (369)
Q Consensus 206 -------------------------------------------------------------------------------- 205 (369)
T Consensus 553 ~~~~~~~~~~~t~~~l~~~~~~~~s~~~~~~~~~v~~~~~~~~~~~~~e~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (842)
T KOG1870|consen 553 LLVSVLSGAQSTEEDLLSVICHRTSRYSREPPLNVGYGVDDQSLKEVSEQSAESSSSVSRDPSEDDNSDQDLSLECLSEE 632 (842)
T ss_pred ceeeccCCCcccccchhhHHhhcccccCCcCccccccCCCcccccccccccccccccccCCChhHhccccccchhhccCc
Confidence
Q ss_pred ---------------------------------------------------------------ccHHHHHHhcCccceec
Q 017540 206 ---------------------------------------------------------------SSITSCLKNFSSTETLN 222 (369)
Q Consensus 206 ---------------------------------------------------------------~~l~~~L~~~~~~e~~~ 222 (369)
.+|+++|+.++.+|.+.
T Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cl~~F~~~E~L~ 712 (842)
T KOG1870|consen 633 SALRFFQSLESRNKSDSEFEPGSTSIAVDWSPSAKYKYSSSLVSQPPEVEPRGASRSKGSPAPNSLESCLELFSEPETLG 712 (842)
T ss_pred ccccccccccccccccccccCCCceeecccChhhccccccccccccccccccccccccCCCCcccHHHHHHhhcchhcCC
Confidence 48999999999999999
Q ss_pred CCCcccccccCCcceeeEEEecccCCceEEEEeeeeeeeccccccccccceeecCcc-cccCCCCCCCC-ceEEEEEEEE
Q 017540 223 AEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPLE-LKLSNTAEDAD-IEYSLFAVVV 300 (369)
Q Consensus 223 ~~~~~~C~~C~~~~~~~~~~~i~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~p~~-l~l~~~~~~~~-~~Y~L~~vi~ 300 (369)
.++.+.|++|..+..+.++..++++|++|+|+++||++.+. ...|+...|.||.. ||+++|+..+. ..|+|+||++
T Consensus 713 ~~~~w~C~~Cke~~~A~Kk~~lwrlPeiLiihLKrF~~~r~--~~~k~~~~v~fPi~~ld~s~~~~~~~~~~Y~l~av~n 790 (842)
T KOG1870|consen 713 KDDRWYCPQCKELRQATKKLDLWRLPEILIIHLKRFQYSRE--SSSKVKTKVEFPLGSLDLSEFVVNKEQVLYDLYAVGN 790 (842)
T ss_pred ccccccChHHHHHHHHhhhhhhhhCCceEEEEeecceeech--hhhhhCccccCCCcCCCcchhhccCccceeeeeeeec
Confidence 99999999999999999999999999999999999999887 56999999999988 89999997655 9999999999
Q ss_pred eecCCCCCccEEEEEee--CCcEEEEeCCcceeeChhhHHhhhcCcccCCCCCCceEEEEEEEeC
Q 017540 301 HVGSGPNHGHYVSLVKS--HNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYESLG 363 (369)
Q Consensus 301 H~G~~~~~GHY~~~vr~--~~~W~~~nD~~V~~v~~~~v~~~~~~~~~~~~~~~~~y~l~Y~r~~ 363 (369)
|.|. +.+|||+||.|. +++|+.|||..|.++.++++. ...||+|||+|++
T Consensus 791 HyG~-l~~GHYta~~k~~~~~~w~~fdDs~v~~~~~~~i~------------t~~aY~Lfy~r~~ 842 (842)
T KOG1870|consen 791 HYGQ-LSGGHYTAYAKNVGDGKWYLFDDSSVSEVDEDEID------------TEAAYVLFYRRLD 842 (842)
T ss_pred ccCC-cCCcchhhhhhcCCCCceEEeccccCCCCChhhcc------------cccceEEEEEecC
Confidence 9999 999999999998 899999999999999999988 8999999999975
No 34
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-37 Score=294.89 Aligned_cols=343 Identities=55% Similarity=0.892 Sum_probs=279.4
Q ss_pred CCCC-cccchhhhcCCCCC---CCCccccccCCchhhhh--HHHHHhhCChhHHHHHHhhhccCCCCCcchhhHHHHHHH
Q 017540 1 MGAA-GSKLEKALGDQFPE---GERYFGLENFGNTCYCN--SVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLAD 74 (369)
Q Consensus 1 ~~~~-~~~~~~~~~~~~~~---~~~~~GL~N~gntCy~N--svLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~ 74 (369)
||++ .|...+..++.++. +...-|..|.+++|+.| ++.+.++.+..++...................++.++..
T Consensus 207 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 286 (587)
T KOG1864|consen 207 MGQSLSSELLKEKGPTFSYSNANERVFGTNNFSNTCCCNFQSVEEALYFCRPFREAVLLYLTSLKRSYIIKEELLTCLLD 286 (587)
T ss_pred hhcccccccccccCCccccccccccccCccccCccccccchhhHHHHHhhhhhcccccchhhcccchhhhhHHHHHHhhh
Confidence 3444 44455555666555 35688999999999999 999999999999966665433322222345677888888
Q ss_pred HHHHHHhcccCCCccChHHHHHHHHhhccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCC-CCcCCCCCCC
Q 017540 75 LFTQIRAQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSP-SEKTANGPTN 153 (369)
Q Consensus 75 l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 153 (369)
++............+.|..+...+.+....|..+.||||+||+..+++.+.+.+............... ..........
T Consensus 287 ~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~f~~~~qQda~eF~~~l~~~~~e~~~~~~~~~~~~~~~~~~~gn~~~~~~~ 366 (587)
T KOG1864|consen 287 LFSSISSRKKLVGRISPTRFISDLIKENELFTNGMQQDAHEFLNFLLNEISETLERESSGTTTKVSPKESDGNSSTSAAS 366 (587)
T ss_pred hccchhhhcccccccCcchhhhhhhhcCCccCchhhccHHHHhhhhccchhhhhhhhccCCcccccccCCCCcccccccc
Confidence 888888777777779999999999999999999999999999999999999887765543332222100 0000000111
Q ss_pred CCCCCCcCCccccccccccceeEeeeeeecCCCCccccccceeecCcccc--cCccHHHHHHhcCccceecCCCcccccc
Q 017540 154 GLANGVRKEPLVTWVHKNFQGILTNETRCLRCETVTARDETFFDLSLDIE--QNSSITSCLKNFSSTETLNAEDKFFCDK 231 (369)
Q Consensus 154 ~~~~~~~~~~~~~~i~~lF~~~~~~~~~C~~C~~~~~~~~~~~~l~l~i~--~~~~l~~~L~~~~~~e~~~~~~~~~C~~ 231 (369)
....+........++..+|++.+....+|.+|+..+.+.+.|..++++++ ...++..+|..+..++.+.|++++.|++
T Consensus 367 ~~~~~~~~~~~~~~v~~lf~g~l~~et~Clsc~t~T~~de~f~D~~~~v~~de~~si~~~l~~~~~~e~l~g~nky~c~~ 446 (587)
T KOG1864|consen 367 WTNKGHHKSLRENWVSKLFQGILTNETRCLSCETITSRDEGFLDLSVAVEIDENTSITNLLKSFSSTETLSGENKYSCEN 446 (587)
T ss_pred ccccccccccchhHHHHhhcCeeeeeeeeccccccccccccccccceeccccccccHHHHHHHhcchhhccCCCcccccc
Confidence 11111333345578999999999999999999999999999999999998 6899999999999999999999999999
Q ss_pred cCCcceeeEEEecccCCceEEEEeeeeeeeccccccccccceeecCcccccCCCCCCCC---ceEEEEEEEEeecCCCCC
Q 017540 232 CCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTAEDAD---IEYSLFAVVVHVGSGPNH 308 (369)
Q Consensus 232 C~~~~~~~~~~~i~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~p~~l~l~~~~~~~~---~~Y~L~~vi~H~G~~~~~ 308 (369)
|...+.+++++.+.++|.+|+++++||.+........|+...+.+|..+.+.....+.. .+|.|+|||+|.|.+.+.
T Consensus 447 c~s~qeae~~l~~k~lp~~L~l~Lkrfk~~~~~~~~~kl~~~v~~plel~l~~~~~~~~~~~~~Y~L~avVvH~G~~p~~ 526 (587)
T KOG1864|consen 447 CCSLQEAERRLKIKKLPYVLTLHLKRFKYSEQQNRYTKLLYRVVFPLELRLKDTLKDDNNPDRKYDLVAVVVHLGSTPNR 526 (587)
T ss_pred cCchhhHHHhccccCCcceeeeehhccccccccccccccccccccccceeeccccccccCccceeeEEEEEEeccCCCCC
Confidence 99999999999999999999999999999887778899999999999999998887655 799999999999999999
Q ss_pred ccEEEEEeeCCc-EEEEeCCcceeeChhhHHhhhcC
Q 017540 309 GHYVSLVKSHNH-WLFFDDENVEMIDESAVQTFFGS 343 (369)
Q Consensus 309 GHY~~~vr~~~~-W~~~nD~~V~~v~~~~v~~~~~~ 343 (369)
|||+||+|..+. |++|||..|..++.++|.++.+.
T Consensus 527 GHYia~~r~~~~nWl~fdD~~V~~~s~~~v~~~~~~ 562 (587)
T KOG1864|consen 527 GHYVAYVKSLDFNWLLFDDDNVEPISEEPVSEFTGS 562 (587)
T ss_pred cceEEEEeeCCCCceecccccccccCcchhhhccCC
Confidence 999999999655 99999999999999999987654
No 35
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.8e-34 Score=243.51 Aligned_cols=173 Identities=26% Similarity=0.482 Sum_probs=132.5
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCcCCCCCCCCCCCCCcCCccccccccccceeEeeeeeecCCCCc
Q 017540 109 MHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETV 188 (369)
Q Consensus 109 ~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lF~~~~~~~~~C~~C~~~ 188 (369)
+|+|+.||+++|++.|..-+. .+.-++|.+-....-. .
T Consensus 22 ~q~D~~e~~~~l~~~~~~~~~------------------------------------~~~~~~~~~g~~~~~~------~ 59 (241)
T cd02670 22 EQQDPEEFFNFITDKLLMPLL------------------------------------EPKVDIIHGGKKDQDD------D 59 (241)
T ss_pred HhcCHHHHHHHHHHHHhhhhh------------------------------------hHHHHHHhcCcccccc------c
Confidence 899999999999999865222 1233344331111000 0
Q ss_pred cccccceeecCccccc---CccHHHHHHhcCccceecCCCcccccccCCcceeeEEEecccCCceEEEEeeeeeeecccc
Q 017540 189 TARDETFFDLSLDIEQ---NSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLG 265 (369)
Q Consensus 189 ~~~~~~~~~l~l~i~~---~~~l~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~~L~i~l~R~~~~~~~~ 265 (369)
+...+.+..|.++.+. ..+|+++|+.++..|. |.++|++|+|+|+||.++. +
T Consensus 60 ~~~~e~~l~l~ip~~~~~~~~tLedcLe~~~~~e~-----------------------i~~lP~vLiIhLKRF~~~~--~ 114 (241)
T cd02670 60 KLVNERLLQIPVPDDDDGGGITLEQCLEQYFNNSV-----------------------FAKAPSCLIICLKRYGKTE--G 114 (241)
T ss_pred cccccceEEeecccCCCCCcCCHHHHHHHHhchhh-----------------------hhhCCCeEEEEEEccccCC--C
Confidence 2334555566665532 4699999999999885 7899999999999999877 4
Q ss_pred ccccccceeecCcccccCCCCCC-------------------------CCceEEEEEEEEeecCCCCCccEEEEEeeC--
Q 017540 266 RYKKLSYRVVFPLELKLSNTAED-------------------------ADIEYSLFAVVVHVGSGPNHGHYVSLVKSH-- 318 (369)
Q Consensus 266 ~~~K~~~~v~~p~~l~l~~~~~~-------------------------~~~~Y~L~~vi~H~G~~~~~GHY~~~vr~~-- 318 (369)
...|+.+.|.||..|+|..++.. ...+|+|.|||+|.|.+..+|||+||+|..
T Consensus 115 ~~~Kl~~~I~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G~s~~sGHYva~vr~~~~ 194 (241)
T cd02670 115 KAQKMFKKILIPDEIDIPDFVADDPRACSKCQLECRVCYDDKDFSPTCGKFKLSLCSAVCHRGTSLETGHYVAFVRYGSY 194 (241)
T ss_pred cceeCCcEECCCCcCCchhhcccccccccccccccccccccccccCCCCCeEEEEEEEEEeCCCCCCCcCeEEEEECCcc
Confidence 67899999999999999998632 346899999999999888999999999983
Q ss_pred -----------CcEEEEeCCcceeeChh------hHHhhhcCcccCCCCCCceEEEEEE
Q 017540 319 -----------NHWLFFDDENVEMIDES------AVQTFFGSAQEYSSNTDHGYILFYE 360 (369)
Q Consensus 319 -----------~~W~~~nD~~V~~v~~~------~v~~~~~~~~~~~~~~~~~y~l~Y~ 360 (369)
+.|++|||..|+.+... .+. ..+||||||+
T Consensus 195 ~~~~~~~~~~~~~W~~FDD~~v~~~~~~~~~~~~~~~------------~~~aYmLFYq 241 (241)
T cd02670 195 SLTETDNEAYNAQWVFFDDMADRDGVSNGFNIPAARL------------LEDPYMLFYQ 241 (241)
T ss_pred cccccccCCCCCeEEEecCcccccccccccccchhcc------------cCCceEEEeC
Confidence 68999999998877543 222 7899999996
No 36
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-34 Score=254.87 Aligned_cols=304 Identities=24% Similarity=0.294 Sum_probs=231.2
Q ss_pred CCccccccCCchhhhhHHHHHhhCChhHHHHHHhhhccCCCCC--cchhhHHHHHHHHHHHHHhcccCCCccChHHHHHH
Q 017540 20 ERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLG--DAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQR 97 (369)
Q Consensus 20 ~~~~GL~N~gntCy~NsvLQ~L~~~p~f~~~l~~~~~~~~~~~--~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~ 97 (369)
+-++||.|.|||||||+.+|+|...|+++..+-.......... .....+..+++.+|+.|... ..+.|..++++
T Consensus 103 ~lp~gl~nlgNtcymnrtVq~lk~v~el~~~~s~~~~~~~~~~t~~~a~~i~~~mR~~f~~~~~~----~~v~pi~llqt 178 (473)
T KOG1872|consen 103 PLPVGLPNLGNTCYMNRTVQCLKGVPELPDALSLYKRKRGRGDTWERRRRISIETRTCFRPLCEK----GAVAPINLLQT 178 (473)
T ss_pred cCCccccchhHHHHhhhhhhhhhcCccCcchhhccchhccCCchhhhhhhHHHHHHHHHHhhhcc----CCcchHHHHHH
Confidence 4478999999999999999999999999998876542211111 22456788899999999887 33889999999
Q ss_pred HHhhccccC------CCCCChHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCcCCCCCCCCCCCCCcCCccccccccc
Q 017540 98 LKKQNELFR------SYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKN 171 (369)
Q Consensus 98 l~~~~~~~~------~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 171 (369)
+.+..+.|. ...||||.|+...++..++..+....... .....+..+
T Consensus 179 l~~~~Pqfa~~~~~g~~~qqda~ec~~~~m~~l~~~~~~~~~~~---------------------------~~~~~~d~~ 231 (473)
T KOG1872|consen 179 LSSQYPQFAEWVEYGIYMQQDAAECWMEEPGMLTEALTVATEAP---------------------------CLEAEAAAG 231 (473)
T ss_pred HHHHhHHHHHHhhhhhHHHHHHhHhHHHhhhheecccccccccc---------------------------chhHHHHHh
Confidence 987766665 48899999999999998877554432111 234568889
Q ss_pred cceeEeeeeeecCCCCcccc--ccceeecCcccccC-ccHHHHHHhcCccceecCCCcccccccCCcceeeEEEecccCC
Q 017540 172 FQGILTNETRCLRCETVTAR--DETFFDLSLDIEQN-SSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSP 248 (369)
Q Consensus 172 F~~~~~~~~~C~~C~~~~~~--~~~~~~l~l~i~~~-~~l~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P 248 (369)
|++.+...+.|..-...... .+.+..|...+... ..+...|..-+..+.-. ..+.-+....-.+...|..+|
T Consensus 232 f~~~~~~t~~~~e~e~~~~~~~~E~~~~L~c~i~~~~~~~k~Gl~~~~~e~~~K-----~s~~lgr~a~y~k~~~isrlP 306 (473)
T KOG1872|consen 232 FGAEFSTTMSCSEGEDEGGGAGRELVDQLKCIINKTVHDMRFGLKSGLSEEIQK-----ISSILGRPAAYQKVMYISRLP 306 (473)
T ss_pred hccccccceeeccCcccccccccccccccceEEeeeechhhhhhhhhhhhhhhc-----cCcccCCChHHHHHhHhhcCc
Confidence 99999999999887665444 56666677666543 23333333333221110 011112222235667899999
Q ss_pred ceEEEEeeeeeeeccccccccccceeecCcccccCCCCC-----------------------------------------
Q 017540 249 HTLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTAE----------------------------------------- 287 (369)
Q Consensus 249 ~~L~i~l~R~~~~~~~~~~~K~~~~v~~p~~l~l~~~~~----------------------------------------- 287 (369)
++|+|++.||.+....+...|+.+.|.||..+|..+.+.
T Consensus 307 ~ylTvq~vrf~~k~k~~~~akil~~V~fP~~ld~~d~ct~el~~k~~~~r~k~r~~edkk~~~~~~~k~~~~~~~~~~~~ 386 (473)
T KOG1872|consen 307 EYLTVQEVRFFSKAKIMVVAKILNAVNFPKDLDQQDLCTPELKKKLLCRRKKHRKVEDKKKEEDVMPKVKGAQERLKEVP 386 (473)
T ss_pred ccceEEEEEEEeccccchHHHHHHhccChhhhhHHHhhCHHhhcCccchHHHHHHHHhcCCchhhcccccCcCccccccc
Confidence 999999999999999999999999999999999887663
Q ss_pred ------------CCCceEEEEEEEEeecCCCCCccEEEEEee-CCcEEEEeCCcceeeChhhHHhhhcCcccCCCCCCce
Q 017540 288 ------------DADIEYSLFAVVVHVGSGPNHGHYVSLVKS-HNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHG 354 (369)
Q Consensus 288 ------------~~~~~Y~L~~vi~H~G~~~~~GHY~~~vr~-~~~W~~~nD~~V~~v~~~~v~~~~~~~~~~~~~~~~~ 354 (369)
.....|+|.|||.|.|.+.++|||++++|. .++|++|||..|+.+..+.++...||+ +|..|
T Consensus 387 ~e~~~~~~~~~s~~~g~y~l~~vithkgrss~sghy~aw~r~s~~~w~~fdd~~vs~v~~e~i~~lsggg-----d~~~a 461 (473)
T KOG1872|consen 387 LEGMYNKSGGKSRNSGLYDLQLVITHKGRSSKSGHYVAWNRVSEDKWGHFDDDMVSFVLGETILSLSGGG-----DWHSA 461 (473)
T ss_pred ccchhccccccccccceeeeeEeeeccccccCCCcceEEEeccCCceeeccccccccccccceeeecCCC-----ccchh
Confidence 115679999999999999999999999998 789999999999999999999888774 48999
Q ss_pred EEEEEEEeCC
Q 017540 355 YILFYESLGA 364 (369)
Q Consensus 355 y~l~Y~r~~~ 364 (369)
|+|+|.-...
T Consensus 462 yvllyk~~~l 471 (473)
T KOG1872|consen 462 YVLLYKARVL 471 (473)
T ss_pred hheeeccccc
Confidence 9999986543
No 37
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=9.6e-31 Score=227.05 Aligned_cols=330 Identities=24% Similarity=0.348 Sum_probs=236.2
Q ss_pred CCccccccCCchhhhhHHHHHhhCChhHHHHHHhhhccCCCCCcchhhHHHHHHHHHHHHHhcccCC-----------C-
Q 017540 20 ERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKT-----------G- 87 (369)
Q Consensus 20 ~~~~GL~N~gntCy~NsvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~-----------~- 87 (369)
-.|+|+.|.||-|||||+||+|+.|++|.+.+...+.....-.....+++.++..++....+-.... .
T Consensus 26 i~Prg~ink~n~c~~ns~Lqal~~c~pfy~l~~~i~~~~~~~~~~stp~lda~~~~~~df~n~~~~k~~r~N~~~~~~~~ 105 (420)
T KOG1871|consen 26 IDPRGSINKCNICFMNSILQALLYCSPFYNLLELIKRADGTVKEGSTPLLDASRPASSDFNNDSDAKLPRKNSLRVPEHV 105 (420)
T ss_pred cCCccccccceeEeeHHHHHHHHhCccHHHHHHhhhhhcCceecccchhHHHHHHHHhhccccchhhhhhhccCCccccc
Confidence 4599999999999999999999999999999987654433333445567777777776554211100 0
Q ss_pred --------------ccChHHHHHH-HHh-hccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC---------
Q 017540 88 --------------VIAPKRFVQR-LKK-QNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSS--------- 142 (369)
Q Consensus 88 --------------~~~~~~~~~~-l~~-~~~~~~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~--------- 142 (369)
++-+..+... +.. .......|.|+||.||+..+++.||+|+.........+...-
T Consensus 106 ~~~ses~~~d~~~dav~~d~~~~~l~t~~~~e~~~~g~qedAeefl~~~ld~lhee~~~v~~~~~~~n~e~t~~~~i~~~ 185 (420)
T KOG1871|consen 106 VEKSESNKSDLQGDAVKPDPIYLDLLTMSRFESLQVGKQEDAEEFLLDNLDFLHEESSEVPTELVPPNDEFTPRGLINNG 185 (420)
T ss_pred cchhhhhhhcccCccccCCchhhhcccCCchhhccccccccHHHHHHHHHhhhhHHHHhhhhhhcCCccccccccccccc
Confidence 0111111111 111 122334689999999999999999999887655444332220
Q ss_pred ------CCCcCC-CCCCC--------CCCCCCcCCccccccccccceeEeeeeeecCCCCccccccceeecCccc--ccC
Q 017540 143 ------PSEKTA-NGPTN--------GLANGVRKEPLVTWVHKNFQGILTNETRCLRCETVTARDETFFDLSLDI--EQN 205 (369)
Q Consensus 143 ------~~~~~~-~~~~~--------~~~~~~~~~~~~~~i~~lF~~~~~~~~~C~~C~~~~~~~~~~~~l~l~i--~~~ 205 (369)
...++. ++..+ -..-........++|.++|+|++.+...-+. .+++....||.-++|++ ..-
T Consensus 186 n~~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r~~~~~~spiS~ifgg~~rs~l~~~~-nkeS~tlqPF~tlqldiq~~~i 264 (420)
T KOG1871|consen 186 NLCNLDSTEEAGLSESSGVQLLGKIQKTDIPRADSFVRSPISEIFGGQLRSVLYQPS-NKESATLQPFFTLQLDIQSEKI 264 (420)
T ss_pred ccccccchhhcccccCchhhhcCCcccCccCCCCCcccCcHHHhhccccccceeccc-cccccccCccceeeeeeecccc
Confidence 000000 00000 0000111222457899999999998877655 34557889999999999 456
Q ss_pred ccHHHHHHhcCccceecCCCcccccccCCcceeeEEEecccCCceEEEEeeeeeeeccccccccccceeecCcccccCCC
Q 017540 206 SSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNT 285 (369)
Q Consensus 206 ~~l~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~p~~l~l~~~ 285 (369)
.+.+++++.+...+.+.+ + -.+-+....+.+++.+.++|++|++|++||.+... |+..|+.+.+.+|-.+.+...
T Consensus 265 ~sv~~ales~~~re~lp~---~-st~s~~eV~~s~q~~leklp~vlilhlkrF~ye~t-gg~~k~~K~i~~~~~l~i~~~ 339 (420)
T KOG1871|consen 265 HSVQDALESLVARESLPG---Y-STKSGQEVEASSQTTLEKLPPVLILHLKRFVYEKT-GGARKLGKKIEYPWTLKISKN 339 (420)
T ss_pred CCHHHHhhccChhhcccc---e-ecCCCCeechhhhhhHhhcchhhhhhhhHHHHHhc-cchhhhchhhhccceeeechh
Confidence 799999999888887764 2 22245556677888999999999999999998764 788999999999988777653
Q ss_pred CC---------CCCceEEEEEEEEeecCCCCCccEEEEEee--CCcEEEEeCCcceeeChhhHHhhhcCcccCCCCCCce
Q 017540 286 AE---------DADIEYSLFAVVVHVGSGPNHGHYVSLVKS--HNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHG 354 (369)
Q Consensus 286 ~~---------~~~~~Y~L~~vi~H~G~~~~~GHY~~~vr~--~~~W~~~nD~~V~~v~~~~v~~~~~~~~~~~~~~~~~ 354 (369)
+= .....|+|.++|.|.|.+...|||.+-+.+ .+.|+.+||..|..+..++|++. ....++
T Consensus 340 ~~s~gvk~~~~~~~~~yks~~vvyhtgtsatvghYl~dv~~s~~~gw~rIDD~~i~~v~q~dv~~~--------t~~r~~ 411 (420)
T KOG1871|consen 340 CFSQGLKIRILIATRPYKSLAVVYHTGTSATVGHYLEDVSRSVPSGWQRIDDALILFVAQEDVEKV--------TGSRTP 411 (420)
T ss_pred hhccccchhhhccccccceEEEEEecccccccCceEEeeeecccCceeEeccceeeeccHhhhccc--------cCccch
Confidence 31 235679999999999999999999999987 78999999999999999999963 237899
Q ss_pred EEEEEEEeC
Q 017540 355 YILFYESLG 363 (369)
Q Consensus 355 y~l~Y~r~~ 363 (369)
|++.|+|.+
T Consensus 412 yllyY~~~d 420 (420)
T KOG1871|consen 412 YLLYYIEAD 420 (420)
T ss_pred heeEeeecC
Confidence 999999864
No 38
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=99.96 E-value=7.6e-29 Score=214.37 Aligned_cols=287 Identities=26% Similarity=0.390 Sum_probs=226.0
Q ss_pred cCCCCCCCCccccccCCchhhhhHHHHHhhCChhHHHHHHhhhccCCCCCcchhhHHHHHHHHHHHHHhcccCCCccChH
Q 017540 13 GDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPK 92 (369)
Q Consensus 13 ~~~~~~~~~~~GL~N~gntCy~NsvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~ 92 (369)
+.++-++ ++||.|+.++-|+|++||+|++.+++|++++.- ....+....++.+|..+++++|.+..-...++|.
T Consensus 127 ~~tYLpG--~VGLnNik~~dy~n~vl~~ls~v~PlRnyFl~~----~n~~d~~~~lv~rl~~l~rklw~~r~fk~hvSph 200 (442)
T KOG2026|consen 127 GSTYLPG--FVGLNNIKANDYANAVLQALSHVVPLRNYFLLE----ENYFDNLTELVQRLGELIRKLWNPRNFKGHVSPH 200 (442)
T ss_pred CCcceee--eeccchhhhHHHHHHHHHHHhccchhhhhhccc----ccccchhHHHHHHHHHHHHHhcChhhhcccCCHH
Confidence 5555555 999999999999999999999999999999873 1234567789999999999999999988999999
Q ss_pred HHHHHHHh-hccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCcCCCCCCCCCCCCCcCCccccccccc
Q 017540 93 RFVQRLKK-QNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKN 171 (369)
Q Consensus 93 ~~~~~l~~-~~~~~~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 171 (369)
++++++.. ....|..++|-|+.||+.|+|+.||..+.... ...|+|+..
T Consensus 201 e~lqaV~~~s~k~f~i~~q~DpveFlswllntlhs~l~~~k------------------------------~~~SIi~~~ 250 (442)
T KOG2026|consen 201 EFLQAVMKLSKKRFRIGQQSDPVEFLSWLLNTLHSDLRGSK------------------------------KASSIIHKS 250 (442)
T ss_pred HHHHHHHHHhhhheecCCCCCHHHHHHHHHHHHHHHhCCCC------------------------------CchhHhhHh
Confidence 99999854 56789999999999999999999999876543 133789999
Q ss_pred cceeEeeeeeecC----CCCccccccceeecCcccccCc--------------cHHHHHHhcCccceecCCCcccccccC
Q 017540 172 FQGILTNETRCLR----CETVTARDETFFDLSLDIEQNS--------------SITSCLKNFSSTETLNAEDKFFCDKCC 233 (369)
Q Consensus 172 F~~~~~~~~~C~~----C~~~~~~~~~~~~l~l~i~~~~--------------~l~~~L~~~~~~e~~~~~~~~~C~~C~ 233 (369)
|+|.+....+-.. -........+|+.|.|++|+.+ .|.++|..|-....-+ + .
T Consensus 251 fqG~~ri~k~~~~~~~~~~~~~i~~~~Fl~LtLDLP~~plfkD~~e~niiPQV~l~~lL~Kf~g~t~~e----~-----~ 321 (442)
T KOG2026|consen 251 FQGEVRIVKEKQGEASENENKEISVMPFLYLTLDLPPPPLFKDVMEKNIIPQVALFDLLKKFDGETVTE----V-----V 321 (442)
T ss_pred hcceEEeeeeccccccccccceEEEEeeEEEEecCCCCCcccchhhhcccccchHHHHHHHhcCceeee----e-----c
Confidence 9998876544333 2223445668999999998753 5666666655433222 1 1
Q ss_pred CcceeeEEEecccCCceEEEEeeeeeeeccccccccccceeecC-cccccCCCC------CCCCceEEEEEEEEeecCCC
Q 017540 234 SLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFP-LELKLSNTA------EDADIEYSLFAVVVHVGSGP 306 (369)
Q Consensus 234 ~~~~~~~~~~i~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~p-~~l~l~~~~------~~~~~~Y~L~~vi~H~G~~~ 306 (369)
....+ ++.++.++|++|+++++||.-+. .-..|..+-+.|| ..+++.... ......|.|.|-++|. .
T Consensus 322 ~~~~~-~rf~l~k~P~ylifh~~rF~kNn--~f~ekNpTl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~i~~---~ 395 (442)
T KOG2026|consen 322 TPKLA-MRFRLTKLPRYLIFHMKRFKKNN--FFKEKNPTLVEFPYSEVDILHVLDRLKAVNHKVTQYSLVANAIHE---D 395 (442)
T ss_pred chhhh-hheeeecCCceEEEEeeeccccC--cccccCCceeeccCCccchhhhhhhcccccCccccccchhhhhcC---c
Confidence 11222 67789999999999999998655 4778999999999 334443322 3345789999999997 3
Q ss_pred CCccEEEEEee--CCcEEEEeCCcceeeChhhHHhhhcCcccCCCCCCceEEEEEEEe
Q 017540 307 NHGHYVSLVKS--HNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYESL 362 (369)
Q Consensus 307 ~~GHY~~~vr~--~~~W~~~nD~~V~~v~~~~v~~~~~~~~~~~~~~~~~y~l~Y~r~ 362 (369)
..|||...+++ .++||..+|-.|++..++.+. -.++||.+|+++
T Consensus 396 e~~~~riqi~~~~s~kW~eiqdl~v~e~~~qmi~------------L~Es~iQiwe~~ 441 (442)
T KOG2026|consen 396 EDGNFRIQIYDNSSEKWYEIQDLHVTERLPQMIF------------LKESFIQIWEKQ 441 (442)
T ss_pred ccCceEEEEEeCCCcceEEecccchhhhhhHHHH------------HHHHHHHHHhcc
Confidence 56999999998 789999999999999999888 689999999886
No 39
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.92 E-value=9.9e-25 Score=206.70 Aligned_cols=317 Identities=21% Similarity=0.267 Sum_probs=220.7
Q ss_pred CCccccccCCchhhhhHHHHHhhCChhHHHHHHhhhccCCCCCcchhhHHHHHHHHHHHHHhcccCCCccChHHHHHHHH
Q 017540 20 ERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLK 99 (369)
Q Consensus 20 ~~~~GL~N~gntCy~NsvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~l~ 99 (369)
+.|+||.-.+-+-|.||+||+|+.+|++|..++.|. +..+.|++|+|+.||.+|..+.+. .+...+|+++++
T Consensus 497 T~yaGLe~~i~N~YcNamiQllyfl~~~r~~vl~H~------C~~e~CL~CELGFLF~Ml~~S~G~--~Cqa~NFlraf~ 568 (1118)
T KOG1275|consen 497 TTYAGLETDIPNSYCNAMIQLLYFLPPIRSIVLRHI------CTKEFCLLCELGFLFTMLDSSTGD--PCQANNFLRAFR 568 (1118)
T ss_pred ceeeccCCCCchHHHHHHHHHHHhccHHHHHHHcCc------cchhHHHHHHHHHHHHHHhhhcCC--ccchhHHHHHHh
Confidence 669999999988899999999999999999999973 566889999999999999998877 499999999997
Q ss_pred hhccccCCC---CCChHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCC--CcCCCCCCCCCCCCCcCCccccccccccce
Q 017540 100 KQNELFRSY---MHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPS--EKTANGPTNGLANGVRKEPLVTWVHKNFQG 174 (369)
Q Consensus 100 ~~~~~~~~~---~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~lF~~ 174 (369)
.....-..+ .+.++.+.+.. ..+.+.+++.. ....+-... +......+.....+...-.++..+...|+.
T Consensus 569 t~~~a~~LG~vl~d~~~~~~~~~--~~liq~~~~~~---~set~~~~d~~~~~~~~~s~~~~~~~~~vn~~~~l~q~F~~ 643 (1118)
T KOG1275|consen 569 TNPEASALGLVLSDTQISGTVND--DVLIQDAEGFI---SSETSRHLDCQDCRGLQQSESVDGESFKVNYAPVLQQSFCQ 643 (1118)
T ss_pred hChHhhhhcccccchhhccccch--HHHhhhhhhcc---chhhhhhhhHHHhhhhhhhhcccCceeeecchhHHHHHhhh
Confidence 643322111 11112222111 01111110000 000000000 000000111222333444466789999999
Q ss_pred eEeeeeeecCCCCccccccceeecCcccccC---------ccHHHHHHhcCccceecCCCcccccccCCcceeeEEEecc
Q 017540 175 ILTNETRCLRCETVTARDETFFDLSLDIEQN---------SSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIK 245 (369)
Q Consensus 175 ~~~~~~~C~~C~~~~~~~~~~~~l~l~i~~~---------~~l~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~ 245 (369)
..+...+|..|+.+.++......+.+..|.. -.+.+.|.+-....... ...|+.|.+...-.++..+.
T Consensus 644 ~~e~~~~Cg~C~~~~~~~k~l~~~~lsyp~~~~id~~~~~~~F~~iL~R~l~l~kn~---~~~C~~C~k~ep~~q~~~vr 720 (1118)
T KOG1275|consen 644 EIEKSLRCGECGDEKQKSKSLLRKVLSYPNVLLIDTLAKSNNFVEILKRSLSLFKNK---QAWCETCTKPEPTSQKKNVR 720 (1118)
T ss_pred HHHHhhhcccccchhhhhhhhhheeecCCCccchhhcccccchHHHhhhhhhccccc---ccccccccCCCCcccccccc
Confidence 9999999999999888777666666666542 23455555443333222 26799999999999999999
Q ss_pred cCCceEEEEeeeeeeeccc--cccccccceeecCcccccCCCC---------------------CCCCceEEEEEEEEee
Q 017540 246 KSPHTLVIHLKRFKYIEQL--GRYKKLSYRVVFPLELKLSNTA---------------------EDADIEYSLFAVVVHV 302 (369)
Q Consensus 246 ~~P~~L~i~l~R~~~~~~~--~~~~K~~~~v~~p~~l~l~~~~---------------------~~~~~~Y~L~~vi~H~ 302 (369)
.+|.+|.|+..-+....-. ....|....|++|.++.|...- +....+|+|.|+|+|+
T Consensus 721 ~LPd~L~in~~~~~~~~~~~~a~q~~~~~~vWLP~~~~~~~~k~~~~~v~~~s~~~~~~~~~~d~~~~~vYeL~a~V~~I 800 (1118)
T KOG1275|consen 721 SLPDCLSINTCLNVHELVDFWARQNKLLEDVWLPEWFHMIISKNKAQLVSTISDLDVSPLPDYDEPSAVVYELDAMVHAI 800 (1118)
T ss_pred cCcceeeeeeeccchhhhhhHHHhhccccccccchheeEEEecccceeeeeeccccCCCCccccCCceEEEEeeeEEEEe
Confidence 9999999998765443221 2234667788999886665422 1245899999999999
Q ss_pred cCCCCCccEEEEEee----------CCcEEEEeCCcceeeChhhHHhhhcCcccCCCCCCceEEEEE
Q 017540 303 GSGPNHGHYVSLVKS----------HNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFY 359 (369)
Q Consensus 303 G~~~~~GHY~~~vr~----------~~~W~~~nD~~V~~v~~~~v~~~~~~~~~~~~~~~~~y~l~Y 359 (369)
|++.+.+|++++|+- +.+||+|||..|.+++++|++.+.+. |+.|.||+|
T Consensus 801 ~d~~~e~~lVs~Ikv~~~~~~~~~~dsqWylFNDfLV~~ite~EAl~~~~~-------WKvP~Il~Y 860 (1118)
T KOG1275|consen 801 GDNENEVNLVSPIKVLRPYHVIKPDDSQWYLFNDFLVSEITEEEALHFDGP-------WKVPAILYY 860 (1118)
T ss_pred ccCCCccceEEEEEccCcccccCcCcceeEEEcceeeeeCChHHheEeccC-------ccCcEEEEE
Confidence 998899999999984 36999999999999999999987665 999999999
No 40
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=98.95 E-value=2.1e-08 Score=83.97 Aligned_cols=134 Identities=22% Similarity=0.403 Sum_probs=85.6
Q ss_pred cccccccccceeEeeeeeecCCCCccccccceeecCcccccCccHHHHHHhcCccceecCCCcccccccCCcceeeEEEe
Q 017540 164 LVTWVHKNFQGILTNETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMK 243 (369)
Q Consensus 164 ~~~~i~~lF~~~~~~~~~C~~C~~~~~~~~~~~~l~l~i~~~~~l~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~ 243 (369)
.+..+.++|...+.=...|..||+.....-.-.- +|+...+-.|-. +....-..|.+|+. ....+++.
T Consensus 119 ~d~~~E~lF~~sf~WeFeC~~Cg~~~~~R~~K~L--------~TFtnv~pdwhP---LnA~h~~pCn~C~~-ksQ~rkMv 186 (275)
T PF15499_consen 119 LDPWIEKLFLYSFSWEFECSQCGHKYQNRCTKTL--------VTFTNVIPDWHP---LNAVHFGPCNSCNS-KSQRRKMV 186 (275)
T ss_pred cchHHHhHhheeeEEEEEccccCChhhhhheeee--------cccCCCCCCCCc---ccccccCCCcccCC-hHHhHhhh
Confidence 4456889999999999999999975432111000 011111111111 11111246999987 44567888
Q ss_pred cccCCceEEEEeeeeeeeccccccccccceeecCcccccCCCC-CCCCceEEEEEEEEeecCCCCCccEEEEEee-CCcE
Q 017540 244 IKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTA-EDADIEYSLFAVVVHVGSGPNHGHYVSLVKS-HNHW 321 (369)
Q Consensus 244 i~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~p~~l~l~~~~-~~~~~~Y~L~~vi~H~G~~~~~GHY~~~vr~-~~~W 321 (369)
+.++|++|.+++.- | +|.. |+..|. .-.+..|++.+||.+.-. --|+++++++ +|.|
T Consensus 187 lekv~~vfmLHFVe-------G----------LP~n-dl~~ysF~feg~~Y~Vt~VIQY~~~---~~HFvtWi~~~dGsW 245 (275)
T PF15499_consen 187 LEKVPPVFMLHFVE-------G----------LPHN-DLQHYSFHFEGCLYQVTSVIQYQAN---LNHFVTWIRDSDGSW 245 (275)
T ss_pred hhcCchhhhhhhhc-------c----------CCcc-CCCccceeecCeeEEEEEEEEEecc---CceeEEEEEcCCCCe
Confidence 99999999998541 1 1111 222222 224678999999999764 3699999999 8999
Q ss_pred EEEeCCcce
Q 017540 322 LFFDDENVE 330 (369)
Q Consensus 322 ~~~nD~~V~ 330 (369)
..|||-+=-
T Consensus 246 LecDDLkgp 254 (275)
T PF15499_consen 246 LECDDLKGP 254 (275)
T ss_pred EeeccCCCc
Confidence 999998753
No 41
>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=4.2e-07 Score=87.92 Aligned_cols=222 Identities=20% Similarity=0.266 Sum_probs=139.6
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCcCCCCCCCCCCCCCcCCccccccccccceeEeeeeeecCCCC
Q 017540 108 YMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCET 187 (369)
Q Consensus 108 ~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lF~~~~~~~~~C~~C~~ 187 (369)
....++.++|..++..|+........+... .......+..|....-.+...++|.........|..|..
T Consensus 547 ~~~~~~S~lL~~ll~~l~~~~~~ss~~~~v-----------~~aile~~~~Wk~~er~~l~~~lf~l~~~e~~Sc~~cr~ 615 (806)
T KOG1887|consen 547 KHEGVYSELLSDLLLSLEEVHNASSSAADV-----------VVAILEFWQCWKNPERESLVNRLFTLEEKERMSCSKCRR 615 (806)
T ss_pred HhhhhHHHHHHHHHhhhHHHhhhcchhhHH-----------HHHHHhcccccccHHHHHHHHhhhhhhhhhhcccccccc
Confidence 345577888888888887766543111110 001111222355555667899999999999999999987
Q ss_pred ccccccceee-cCcccc---------cCccHHHHHHhcCccceecCCCcccccc----cCCcceeeEEEecccCCceEEE
Q 017540 188 VTARDETFFD-LSLDIE---------QNSSITSCLKNFSSTETLNAEDKFFCDK----CCSLQEAQKRMKIKKSPHTLVI 253 (369)
Q Consensus 188 ~~~~~~~~~~-l~l~i~---------~~~~l~~~L~~~~~~e~~~~~~~~~C~~----C~~~~~~~~~~~i~~~P~~L~i 253 (369)
.....+...+ +.+... ...++.+.|.. ...+ +.+.|+. |++ .......|...|++++|
T Consensus 616 ~~n~peqsS~~~~~~a~slr~~k~a~~n~~f~~ilk~-i~m~-----~~m~cD~~~gGCgk--~n~v~h~is~~P~vftI 687 (806)
T KOG1887|consen 616 DLNYPEQSSYGIVIAADSLRQLKCAFQNITFEDILKN-IRMN-----DKMLCDKETGGCGK--ANLVHHILSPCPPVFTI 687 (806)
T ss_pred CCCCcchhhhhhhccchhhhhHHHHhhhhhHHHHHHH-hhhh-----hhhcccccCCCCcc--hhhhhhhcCCCCCeeEe
Confidence 6655532111 111111 12455555554 2221 2355654 553 23445567889999999
Q ss_pred Eeeeeeeecccccccc--ccceeecCcccccCCC---CCCCCceEEEEEEEEeecCCCCCccEEEEEeeCCcEE--EEeC
Q 017540 254 HLKRFKYIEQLGRYKK--LSYRVVFPLELKLSNT---AEDADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWL--FFDD 326 (369)
Q Consensus 254 ~l~R~~~~~~~~~~~K--~~~~v~~p~~l~l~~~---~~~~~~~Y~L~~vi~H~G~~~~~GHY~~~vr~~~~W~--~~nD 326 (369)
.+.+- .. +..+ ..+...+..++|++.. +..+..+|+|++||..... .++|.|+.+..++|. ..+|
T Consensus 688 vlewE---k~--ETe~eI~~T~~aL~teidis~~y~~g~ep~t~yrLVSmv~~~e~---~~~~~C~Aye~Nrwvs~r~~~ 759 (806)
T KOG1887|consen 688 VLEWE---KS--ETEKEISETTKALATEIDISRLYREGLEPNTKYRLVSMVGNHEE---GEEYICFAYEPNRWVSLRHED 759 (806)
T ss_pred eeehh---cc--cchHHHHHHHHHHHhhhhHHHHhhhccCcCceeEEEEEeeeccc---cceEEEeeccCCcchhhHHHH
Confidence 66532 21 1122 2223334455665542 3357889999999987642 579999999999998 9999
Q ss_pred Ccceee-ChhhHHhhhcCcccCCCCCCceEEEEEEEe
Q 017540 327 ENVEMI-DESAVQTFFGSAQEYSSNTDHGYILFYESL 362 (369)
Q Consensus 327 ~~V~~v-~~~~v~~~~~~~~~~~~~~~~~y~l~Y~r~ 362 (369)
..+..+ .|.+|..+++.. .-.+-+|||++.
T Consensus 760 ~~~e~iG~w~dvvr~c~e~------~vrpeil~ye~~ 790 (806)
T KOG1887|consen 760 SQGEVVGDWKDVVRFCGER------KVRPEILFYEAQ 790 (806)
T ss_pred HHhhhccchHHHHHHHhcc------cccHHHHHHHHH
Confidence 999888 799999988753 466888888763
No 42
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.00014 Score=70.42 Aligned_cols=108 Identities=26% Similarity=0.356 Sum_probs=64.2
Q ss_pred CccccccCCchhhhhHHHHHhhCChhHHHHHHhhhccCCCCC-------cchh------hHHHHHHHHHHHHHhcccCCC
Q 017540 21 RYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLG-------DAEE------NLLTCLADLFTQIRAQKKKTG 87 (369)
Q Consensus 21 ~~~GL~N~gntCy~NsvLQ~L~~~p~f~~~l~~~~~~~~~~~-------~~~~------~~~~~l~~l~~~l~~~~~~~~ 87 (369)
.++ |.|.||+||.|++||+|..+|+|+..+...+.-..... .... ....+....+... .......
T Consensus 31 ~~~-l~n~gn~cy~ns~~Q~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 108 (587)
T KOG1864|consen 31 KFR-LVNTGNSCYYNSTLQALSSCPPFVSRVEQLPRLVRPKIEALKDSLNRKKTRIFDEKSLEAVTLNFSKN-SSSNESF 108 (587)
T ss_pred ceE-EeecCCchhhhhHHHHHhhccHHHHHHHHHHHhcccccccCchhhccccccchhHHHHHHHHHhhhcc-CCccccc
Confidence 344 99999999999999999999999999986532211100 0111 1111222222222 1111122
Q ss_pred ccChHHHHHHHH---hhccccCCCCCChHHHHHHHHHHHHHHHHHH
Q 017540 88 VIAPKRFVQRLK---KQNELFRSYMHQDAHEFLNFLLNELVDILEK 130 (369)
Q Consensus 88 ~~~~~~~~~~l~---~~~~~~~~~~qqDa~Efl~~ll~~l~~~~~~ 130 (369)
......+.+.+. +....|....|+|+++++..++..+.+.+..
T Consensus 109 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~~~~~~~ 154 (587)
T KOG1864|consen 109 NLSVTQLVQSRLNNGKKYAEFNNNDQRDAHNFLLELMAMVDDVMGV 154 (587)
T ss_pred cchHHHHHHHHhhhhhhhhhhhcccHhhhhhhhhhhhHHHhhhccc
Confidence 233444444443 3445588899999999999988887665443
No 43
>KOG3556 consensus Familial cylindromatosis protein [General function prediction only]
Probab=97.49 E-value=4.5e-05 Score=70.13 Aligned_cols=31 Identities=19% Similarity=0.368 Sum_probs=23.1
Q ss_pred CccccccCCchhhhhHHHHHhhCChhHHHHH
Q 017540 21 RYFGLENFGNTCYCNSVLQALYFCVPFREQL 51 (369)
Q Consensus 21 ~~~GL~N~gntCy~NsvLQ~L~~~p~f~~~l 51 (369)
...|++-.-|.||+||.|-.++.-....+.+
T Consensus 367 k~kgiqgh~nscyldstlf~~f~f~sv~dS~ 397 (724)
T KOG3556|consen 367 KIKGIQGHPNSCYLDSTLFKPFEFDSVTDST 397 (724)
T ss_pred ccccccCCcchhhcccccccccccccccccc
Confidence 3778888889999999998877644443333
No 44
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=96.32 E-value=0.054 Score=48.63 Aligned_cols=72 Identities=22% Similarity=0.257 Sum_probs=36.5
Q ss_pred cccCCchhhhhHHHHHhhCChh-HHHHHHhhhccCCCCCcchhhHHHHHHHHHHHHHhcccCCCccChHHHHHHHHhhcc
Q 017540 25 LENFGNTCYCNSVLQALYFCVP-FREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQNE 103 (369)
Q Consensus 25 L~N~gntCy~NsvLQ~L~~~p~-f~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 103 (369)
|.=.-|+||+||++=+|=.... |+.. .|.+++..+.. -+|..|...+-.. .
T Consensus 105 Lkq~dNNCwVna~~~~LQ~~~~~f~~~--------------------~l~~aw~~f~~-------G~~~~fVa~~Ya~-~ 156 (320)
T PF08715_consen 105 LKQSDNNCWVNAACLQLQALKIKFKSP--------------------GLDEAWNEFKA-------GDPAPFVAWCYAS-T 156 (320)
T ss_dssp E---TTTHHHHHHHHHHTTST--BSSH--------------------HHHHHHHHHHT-------T--HHHHHHHHHH-T
T ss_pred EEecCCCcHHHHHHHHHHhcCCccCCH--------------------HHHHHHHHHhC-------CChHHHHHHHHHH-c
Confidence 4445699999999877655432 2221 23333333333 3455555555442 2
Q ss_pred ccCCCCCChHHHHHHHHHHHH
Q 017540 104 LFRSYMHQDAHEFLNFLLNEL 124 (369)
Q Consensus 104 ~~~~~~qqDa~Efl~~ll~~l 124 (369)
....|+..||+++|..+++.+
T Consensus 157 ~~~~G~~gDa~~~L~~ll~~~ 177 (320)
T PF08715_consen 157 NAKKGDPGDAEYVLSKLLKDA 177 (320)
T ss_dssp T--TTS---HHHHHHHHHTTB
T ss_pred CCCCCCCcCHHHHHHHHHHhc
Confidence 245678889999999988654
No 45
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=96.18 E-value=0.0023 Score=51.27 Aligned_cols=35 Identities=23% Similarity=0.278 Sum_probs=27.1
Q ss_pred EEEEEeecCCCCCccEEEEEeeCCcEEEEeCCcceeeCh
Q 017540 296 FAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDE 334 (369)
Q Consensus 296 ~~vi~H~G~~~~~GHY~~~vr~~~~W~~~nD~~V~~v~~ 334 (369)
.+.|.-.|. ||.+.+.+..+.||.+||+.+....+
T Consensus 130 ~agi~~~g~----~Havfa~~ts~gWy~iDDe~~y~~tP 164 (193)
T PF05408_consen 130 HAGIFLKGQ----EHAVFACVTSDGWYAIDDEDFYPWTP 164 (193)
T ss_dssp EEEEEEEST----TEEEEEEEETTCEEEEETTEEEE---
T ss_pred hhHheecCC----cceEEEEEeeCcEEEecCCeeeeCCC
Confidence 455555555 89999999999999999999988764
No 46
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=88.93 E-value=1.1 Score=36.28 Aligned_cols=27 Identities=26% Similarity=0.524 Sum_probs=16.9
Q ss_pred CCCCCccccccCCchhhhhHHHHHhhC
Q 017540 17 PEGERYFGLENFGNTCYCNSVLQALYF 43 (369)
Q Consensus 17 ~~~~~~~GL~N~gntCy~NsvLQ~L~~ 43 (369)
+..-.+.|+.|.+|+||+||++|++..
T Consensus 28 ~~~~eft~~PN~~dnCWlNaL~QL~~~ 54 (193)
T PF05408_consen 28 DGKMEFTGLPNNHDNCWLNALLQLFRY 54 (193)
T ss_dssp ----EEE----SSSTHHHHHHHHHHHH
T ss_pred CcceEEecCCCCCCChHHHHHHHHHHH
Confidence 444558899999999999999999764
No 47
>PF03292 Pox_P4B: Poxvirus P4B major core protein; InterPro: IPR004972 This family is the Poxvirus P4B major core protein. It is a precursor for one of the two most abundant structural components of the virion (major core proteins 4A and 4B).
Probab=75.59 E-value=6.9 Score=37.98 Aligned_cols=84 Identities=14% Similarity=0.076 Sum_probs=47.4
Q ss_pred ceEEEEeeeeeeecc-ccccccccceeecCcccccCCCCCCCCceEEEEEEEEee-cCCC----------CCccEEEEEe
Q 017540 249 HTLVIHLKRFKYIEQ-LGRYKKLSYRVVFPLELKLSNTAEDADIEYSLFAVVVHV-GSGP----------NHGHYVSLVK 316 (369)
Q Consensus 249 ~~L~i~l~R~~~~~~-~~~~~K~~~~v~~p~~l~l~~~~~~~~~~Y~L~~vi~H~-G~~~----------~~GHY~~~vr 316 (369)
.+|++.++|-+.... +|+----...+.-..-+|++..+.-+...|+|.+.|||. |+.. -.||| +.++
T Consensus 479 GvLIfyVeRRq~k~~~~Gec~tg~rs~ind~pidv~q~i~ingimyrL~SAVCYK~~d~~~d~C~~~diflkG~y-tIlf 557 (666)
T PF03292_consen 479 GVLIFYVERRQNKNTFSGECYTGFRSRINDSPIDVSQEITINGIMYRLKSAVCYKIGDQFFDGCNGNDIFLKGYY-TILF 557 (666)
T ss_pred ceEEEEEeehhccceeccccccchhhhhcCcccccccceeecceeeeeehhheeeccccccCCCCCCcceeceeE-EEEE
Confidence 789999998543211 111111111222222244444444556899999999996 4332 13665 5666
Q ss_pred eCCcEEEEe-CCcceeeC
Q 017540 317 SHNHWLFFD-DENVEMID 333 (369)
Q Consensus 317 ~~~~W~~~n-D~~V~~v~ 333 (369)
.+..||++| |..++.-+
T Consensus 558 Te~Gpw~YDP~s~~s~~s 575 (666)
T PF03292_consen 558 TEMGPWMYDPLSIFSKNS 575 (666)
T ss_pred ecCCceeeCchhhcCcch
Confidence 777788888 44444443
No 48
>PF14353 CpXC: CpXC protein
Probab=73.33 E-value=4.3 Score=31.34 Aligned_cols=48 Identities=13% Similarity=0.294 Sum_probs=27.0
Q ss_pred eeecCCCCccccccceeecCcccccCccHHHHHHhcCccceecCCCcccccccCCcce
Q 017540 180 TRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQE 237 (369)
Q Consensus 180 ~~C~~C~~~~~~~~~~~~l~l~i~~~~~l~~~L~~~~~~e~~~~~~~~~C~~C~~~~~ 237 (369)
+.|+.|++.....- ...++....+.+.+.| +..+.. .+.|++|+....
T Consensus 2 itCP~C~~~~~~~v---~~~I~~~~~p~l~e~i---l~g~l~----~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 2 ITCPHCGHEFEFEV---WTSINADEDPELKEKI---LDGSLF----SFTCPSCGHKFR 49 (128)
T ss_pred cCCCCCCCeeEEEE---EeEEcCcCCHHHHHHH---HcCCcC----EEECCCCCCcee
Confidence 67999987653322 2233333344455544 333333 388999997543
No 49
>PF01473 CW_binding_1: Putative cell wall binding repeat; InterPro: IPR018337 The cell wall-binding repeat (CW) is an about 20 amino acid residue module, essentially found in two bacterial Gram-positive protein families; the choline binding proteins and glucosyltransferases (2.4.1.5 from EC). In choline-binding proteins cell wall binding repeats bind to choline moieties of both teichoic and lipoteichoic acids, two components peculiar to the cell surface of Gram-positive bacteria [, ]. In glucosyltransferases the region spanning the CW repeats is a glucan binding domain []. Several crystal structures of CW have been solved [, ]. In the choline binding protein LytA, the repeats adopt a solenoid fold consisting exclusively of beta-hairpins that stack to form a left-handed superhelix with a boomerang-like shape. The choline groups bind between beta-hairpin 'steps' of the superhelix []. In Cpl-1 CW repeats assemble in two sub-domains: an N-terminal superhelical moiety similar to the LytA one and a C-terminal beta-sheet involved in interactions with the lysozyme domain. Choline is bound between repeats 1 and 2, and, 2 and 3 of the superhelical sub-domain []. Some proteins known to contain cell-wall binding repeats include: Pneumococcal N-acetylmuramoyl-L-alanine amidase (autolysin, lytA) (3.5.1.28 from EC). It is a surface-exposed enzyme that rules the self-destruction of pneumococcal cells through degradation of their peptidoglycan backbone. It mediates the release of toxic substances that damage the host tissues. Pneumococcal endo-beta-N-acetylglucosaminidase (lytB) (3.2.1.96 from EC). It plays an important role in cell wall degradation and cell separation. Pneumococcal teichoic acid phosphorylcholine esterase (pce or cbpE), a cell wall hydrolase important for cellular adhesion and colonisation. Lactobacillales glucosyltransferase. It catalyses the transfer of glucosyl units from the cleavage of sucrose to a growing chain of glucan. Clostridium difficile toxin A (tcdA) and toxin B (tcdb). They are the causative agents of the antibiotic-associated pseudomembranous colitis. They are intracellular acting toxins that reach their targets after receptor-mediated endocytosis. Clostridium acetobutylicum cspA protein. Siphoviridae bacteriophages N-acetylmuramoyl-L-alanine amidase. It lyses the bacterial host cell wall. Podoviridae lysozyme protein (cpl-1). It is capable of digesting the pneumococcal cell wall. The cell wall binding repeats are also known as the choline-binding repeats (ChBr) or the choline-binding domain (ChBD). ; PDB: 1GVM_C 2BML_B 1HCX_A 1OBA_A 1H09_A 2J8F_A 2IXU_A 2J8G_A 2IXV_A 2X8O_A ....
Probab=67.97 E-value=7.4 Score=18.69 Aligned_cols=15 Identities=27% Similarity=0.935 Sum_probs=11.7
Q ss_pred EEEeeCCcEEEEeCC
Q 017540 313 SLVKSHNHWLFFDDE 327 (369)
Q Consensus 313 ~~vr~~~~W~~~nD~ 327 (369)
.+++.++.||.|++.
T Consensus 2 ~W~~~~~~wYy~~~~ 16 (19)
T PF01473_consen 2 GWVQDNGNWYYFDSD 16 (19)
T ss_dssp EEEEETTEEEEETTT
T ss_pred cCEEECCEEEEeCCC
Confidence 356778999999865
No 50
>PF02099 Josephin: Josephin; InterPro: IPR006155 Human genes containing triplet repeats can markedly expand in length, leading to neuropsychiatric disease. Expansion of triplet repeats explains the phenomenon of anticipation, i.e. the increasing severity or earlier age of onset in successive generations in a pedigree []. A novel gene containing CAG repeats has been identified and mapped to chromosome 14q32.1, the genetic locus for Machado-Joseph disease (MJD). Normally, the gene contains 13-36 CAG repeats, but most clinically diagnosed patients and all affected members of a family with the clinical and pathological diagnosis of MJD show expansion of the repeat number, from 68-79 []. Similar abnormalities in related genes may give rise to diseases similar to MJD. MJD is a neurodegenerative disorder characterised by cerebellar ataxia, pyramidal and extra-pyramidal signs, peripheral nerve palsy, external ophtalmoplegia, facial and lingual fasciculation and bulging. The disease is autosomal dominant, with late onset of symptoms, generally after the fourth decade.; GO: 0008242 omega peptidase activity; PDB: 3O65_G 1YZB_A 2JRI_A 2DOS_A 2AGA_A.
Probab=66.16 E-value=20 Score=28.76 Aligned_cols=44 Identities=18% Similarity=0.453 Sum_probs=31.2
Q ss_pred EEEEEEEeecCCCCCccEEEEEeeCCcEEEEeCCcc--eeeChhhHHhhhc
Q 017540 294 SLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENV--EMIDESAVQTFFG 342 (369)
Q Consensus 294 ~L~~vi~H~G~~~~~GHY~~~vr~~~~W~~~nD~~V--~~v~~~~v~~~~~ 342 (369)
...|+|++.+. ||+|..|-++.||-+|=..- ..++..++..++.
T Consensus 98 ~~~gfI~N~~~-----HWf~iRki~~~wyNLDS~l~~P~~i~~~~l~~fL~ 143 (157)
T PF02099_consen 98 NEFGFICNLSR-----HWFAIRKIGGQWYNLDSKLKEPELISDFYLSAFLQ 143 (157)
T ss_dssp CSSEEEEECTT-----EEEEEEEETTEEEEECTTTSS-EEE-HHHHHHHHH
T ss_pred hceEEEeccCc-----ceEEEEeeCCeeEeccCCCCCCcccCHHHHHHHHH
Confidence 35688998664 99999888999999995544 3346666655543
No 51
>COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=65.22 E-value=6.7 Score=25.81 Aligned_cols=35 Identities=17% Similarity=0.333 Sum_probs=26.1
Q ss_pred cccccccCCcceeeEEEec--ccCCceEEEEeeeeee
Q 017540 226 KFFCDKCCSLQEAQKRMKI--KKSPHTLVIHLKRFKY 260 (369)
Q Consensus 226 ~~~C~~C~~~~~~~~~~~i--~~~P~~L~i~l~R~~~ 260 (369)
.+.|++|+...-.++.... ..+.+++-||.++|-.
T Consensus 4 ~~kCpKCgn~~~~ekei~~tg~~lskifdvq~n~f~~ 40 (68)
T COG3478 4 AFKCPKCGNTNYEEKEIAATGGGLSKIFDVQNNKFIV 40 (68)
T ss_pred cccCCCcCCcchhhceeeccCCCcceeEEecccEEEE
Confidence 3569999987666665554 4678999999998764
No 52
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=56.27 E-value=3.2 Score=40.08 Aligned_cols=104 Identities=17% Similarity=0.093 Sum_probs=55.8
Q ss_pred CCccccccCCchhhhhHHHHHhhCChhHHHHHHhhhccCCCCCcchhhHHHHHHHHHHHHHhcccCCCc---cChHHHHH
Q 017540 20 ERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGV---IAPKRFVQ 96 (369)
Q Consensus 20 ~~~~GL~N~gntCy~NsvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~---~~~~~~~~ 96 (369)
....++.+.+++|+||+.+|.++.++.|.-+............ ...++...+..+...++........ ..+. ...
T Consensus 75 ~~~~~~~~~~~~~~~~~g~~~~~~c~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~-~~~ 152 (492)
T KOG1867|consen 75 LEHSGNKKHNNTIDVNNGLLYCFACPDFIYDAELLKLADIKKY-KEQPFHQLDSTLLTHLAEATVCQQTLLKENPK-DRL 152 (492)
T ss_pred ccccccccccccceeehhhheeccCCcEeeccchhhHHHHHhh-hccchhhccchhhhhhhhhhccchhcccCCcc-ccc
Confidence 3478999999999999999999999987665543211100000 0112222222222211111111100 1111 112
Q ss_pred HHHhhccccCCCCCChHHHHHHHHHHHHH
Q 017540 97 RLKKQNELFRSYMHQDAHEFLNFLLNELV 125 (369)
Q Consensus 97 ~l~~~~~~~~~~~qqDa~Efl~~ll~~l~ 125 (369)
.+......+.+..-.++.+|+..|+..|.
T Consensus 153 ~~~~~~~~l~g~~n~g~tcfmn~ilqsl~ 181 (492)
T KOG1867|consen 153 VLSTTALGLRGLRNLGSTCFMNVILQSLL 181 (492)
T ss_pred ccceeeecccccccccHHHHHHHHHHHhh
Confidence 22333444556678899999999999986
No 53
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=48.44 E-value=10 Score=34.85 Aligned_cols=32 Identities=28% Similarity=0.085 Sum_probs=29.2
Q ss_pred ccccccCCchhhhhHHHHHhhCChhHHHHHHh
Q 017540 22 YFGLENFGNTCYCNSVLQALYFCVPFREQLLD 53 (369)
Q Consensus 22 ~~GL~N~gntCy~NsvLQ~L~~~p~f~~~l~~ 53 (369)
++|+.|.||.|+.++..|.+++.-++...+-.
T Consensus 178 ~~~~i~~~n~~n~~s~~e~~~~~~~~~~~~gk 209 (420)
T KOG1871|consen 178 PRGLINNGNLCNLDSTEEAGLSESSGVQLLGK 209 (420)
T ss_pred ccccccccccccccchhhcccccCchhhhcCC
Confidence 78999999999999999999999998887764
No 54
>PF13002 LDB19: Arrestin_N terminal like; InterPro: IPR024391 This entry represents a predicted Ig-like beta sandwich domain found towards the N terminus of protein LDB19 []. It is also found in other sequences and is related to the arrestin N-terminal fold [].
Probab=46.85 E-value=49 Score=27.45 Aligned_cols=66 Identities=21% Similarity=0.278 Sum_probs=42.6
Q ss_pred ccccccCCcceeeEEEecccCCceEEEEeeeeeeeccccccccccceeecCcccccCCCCCCCCceEEEEEEEEe
Q 017540 227 FFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTAEDADIEYSLFAVVVH 301 (369)
Q Consensus 227 ~~C~~C~~~~~~~~~~~i~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~p~~l~l~~~~~~~~~~Y~L~~vi~H 301 (369)
..|..|.......++-.|.+-|..|.....-|.|+-- -.=.+|-..+|.. ......+|+|.|.+..
T Consensus 23 ~~C~~C~~~~~eL~~W~~l~~~t~l~~G~h~fPFS~L--------iPG~LPaS~~lgs-~~l~~I~Yel~A~a~~ 88 (191)
T PF13002_consen 23 SHCADCKTQTTELKRWDFLTHPTTLTKGSHAFPFSYL--------IPGHLPASMDLGS-TPLVSIKYELKAEATY 88 (191)
T ss_pred CcChhHhccceeeeecceecCccccCCCcccCCeeEE--------CCCCCccccccCC-CCcEEEEEEEEEEEEE
Confidence 5799999888777777777778777766555554211 1112233334322 3345789999999998
No 55
>cd02418 Peptidase_C39B A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family.
Probab=46.56 E-value=1.3e+02 Score=22.85 Aligned_cols=34 Identities=18% Similarity=0.302 Sum_probs=23.8
Q ss_pred CCCccEEEEEeeCCcEEEEeCC--cceeeChhhHHh
Q 017540 306 PNHGHYVSLVKSHNHWLFFDDE--NVEMIDESAVQT 339 (369)
Q Consensus 306 ~~~GHY~~~vr~~~~W~~~nD~--~V~~v~~~~v~~ 339 (369)
...|||+...+.++.++...|- ....++.++..+
T Consensus 87 ~~~~~~~Vl~~~~~~~~~i~dp~~~~~~~~~~ef~~ 122 (136)
T cd02418 87 WKLNHYVVVYKIKKKKILIADPAVGITKISKEEFEK 122 (136)
T ss_pred CCCCeEEEEEEEcCCEEEEECCCCCCEEeeHHHHHh
Confidence 3569999998887777777664 334567777764
No 56
>KOG2691 consensus RNA polymerase II subunit 9 [Transcription]
Probab=46.37 E-value=35 Score=25.14 Aligned_cols=57 Identities=19% Similarity=0.349 Sum_probs=34.4
Q ss_pred eeecCCCCccccccceeecCcccccCccHHHHHHhcCccceecCCCcccccccCCcc
Q 017540 180 TRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQ 236 (369)
Q Consensus 180 ~~C~~C~~~~~~~~~~~~l~l~i~~~~~l~~~L~~~~~~e~~~~~~~~~C~~C~~~~ 236 (369)
..|.+|.++.....+-....--..+...+...+.......++.......|++|+...
T Consensus 27 laCrnCd~ve~A~s~~vY~~~~~~e~dE~t~ii~Dl~~DPTLPrts~~~C~~C~~~e 83 (113)
T KOG2691|consen 27 LACRNCDYVEEADSSRVYVNELSHEHDELTQIIMDLASDPTLPRTSDKHCPKCGHRE 83 (113)
T ss_pred EEecCCcceEecCCcceEcCCcccchhhHHHHHHhhccCCCcCccccccCCccCCcc
Confidence 567888776655554433333333344566666666665555544457899999753
No 57
>cd02420 Peptidase_C39D A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family.
Probab=39.32 E-value=1.3e+02 Score=22.54 Aligned_cols=32 Identities=6% Similarity=0.129 Sum_probs=20.9
Q ss_pred CccEEEEEee-CCcEEEEeCC-cceeeChhhHHh
Q 017540 308 HGHYVSLVKS-HNHWLFFDDE-NVEMIDESAVQT 339 (369)
Q Consensus 308 ~GHY~~~vr~-~~~W~~~nD~-~V~~v~~~~v~~ 339 (369)
.|||+...+. +++|+.++-. ....++.++..+
T Consensus 83 ~g~~~Vl~~~~~~~~~i~dp~~~~~~~s~~el~~ 116 (125)
T cd02420 83 FNHFLVVEGFDKRKVFLNDPATGRRTVSLEEFDQ 116 (125)
T ss_pred CCEEEEEEEEeCCEEEEECCCcCceeecHHHHHh
Confidence 3899999876 5566666622 234567777765
No 58
>PF03412 Peptidase_C39: Peptidase C39 family This is family C39 in the peptidase classification. ; InterPro: IPR005074 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of sequences defined by this cysteine peptidase domain belong to the MEROPS peptidase family C39 (clan CA). It is found in a wide range of ABC transporters, which are maturation proteases for peptide bacteriocins, the proteolytic domain residing in the N-terminal region of the protein []. A number of the proteins are classified as non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. Lantibiotic and non-lantibiotic bacteriocins are synthesised as precursor peptides containing N-terminal extensions (leader peptides) which are cleaved off during maturation. Most non-lantibiotics and also some lantibiotics have leader peptides of the so-called double-glycine type. These leader peptides share consensus sequences and also a common processing site with two conserved glycine residues in positions -1 and -2. The double- glycine-type leader peptides are unrelated to the N-terminal signal sequences which direct proteins across the cytoplasmic membrane via the sec pathway. Their processing sites are also different from typical signal peptidase cleavage sites, suggesting that a different processing enzyme is involved. ; GO: 0005524 ATP binding, 0008233 peptidase activity, 0006508 proteolysis, 0016021 integral to membrane; PDB: 3K8U_A 3B79_A.
Probab=38.23 E-value=1.2e+02 Score=22.84 Aligned_cols=45 Identities=16% Similarity=0.275 Sum_probs=28.9
Q ss_pred CCccEEEEEeeCCcEEEEeCC--cceeeChhhHHhhhcCcccCCCCCCceEEEEEEEe
Q 017540 307 NHGHYVSLVKSHNHWLFFDDE--NVEMIDESAVQTFFGSAQEYSSNTDHGYILFYESL 362 (369)
Q Consensus 307 ~~GHY~~~vr~~~~W~~~nD~--~V~~v~~~~v~~~~~~~~~~~~~~~~~y~l~Y~r~ 362 (369)
+.|||+-..+.++..+.+-|- ....++.++..+ ..++++|+-++.
T Consensus 83 ~~~h~vVi~~~~~~~~~i~dP~~g~~~~~~~~f~~-----------~w~G~~l~~~~~ 129 (131)
T PF03412_consen 83 KDGHFVVIYKIDDGRVLIYDPKKGKIKLSKEEFEE-----------IWTGEVLLIKPS 129 (131)
T ss_dssp CCCEEEEEEEECCCEEEECCTTTCEEEEEHHHHHH-----------HEEEEEEEEEE-
T ss_pred cCcceEEEEeEcCcEEEEEeCCCCeEEEeHHHHHh-----------hCCCEEEEEEeC
Confidence 448999988776666666553 334557777765 345777776654
No 59
>PF09855 DUF2082: Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082); InterPro: IPR018652 This family of proteins contains various hypothetical prokaryotic proteins as well as some Zn-ribbon nucleic-acid-binding proteins.
Probab=38.17 E-value=32 Score=22.89 Aligned_cols=15 Identities=20% Similarity=0.488 Sum_probs=9.8
Q ss_pred ccccccCCcceeeEE
Q 017540 227 FFCDKCCSLQEAQKR 241 (369)
Q Consensus 227 ~~C~~C~~~~~~~~~ 241 (369)
|.|++|+...-....
T Consensus 1 y~C~KCg~~~~e~~~ 15 (64)
T PF09855_consen 1 YKCPKCGNEEYESGE 15 (64)
T ss_pred CCCCCCCCcceecce
Confidence 579999975543333
No 60
>smart00460 TGc Transglutaminase/protease-like homologues. Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.
Probab=34.56 E-value=57 Score=21.32 Aligned_cols=20 Identities=20% Similarity=0.165 Sum_probs=17.6
Q ss_pred CCCccEEEEEeeCCcEEEEe
Q 017540 306 PNHGHYVSLVKSHNHWLFFD 325 (369)
Q Consensus 306 ~~~GHY~~~vr~~~~W~~~n 325 (369)
....|.+.-++.+++|+.+|
T Consensus 46 ~~~~H~W~ev~~~~~W~~~D 65 (68)
T smart00460 46 IWEAHAWAEVYLEGGWVPVD 65 (68)
T ss_pred CCCcEEEEEEEECCCeEEEe
Confidence 46789999999999999997
No 61
>PF10264 Stork_head: Winged helix Storkhead-box1 domain; InterPro: IPR019391 In humans the Storkhead-box protein controls polyploidization of extravillus trophoblast and is implicated in pre-eclampsia []. This entry represents the conserved N-terminal winged-helix domain, which is likely to bind DNA.
Probab=32.81 E-value=1.7e+02 Score=20.45 Aligned_cols=51 Identities=14% Similarity=0.091 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHHhcccCCCccChHHHHHHHHhhccccCCCCCChHHHHHHHH
Q 017540 67 NLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFL 120 (369)
Q Consensus 67 ~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~qqDa~Efl~~l 120 (369)
++...|+..+.+|+..... +....++..|.+..+.+..-.++.....|..|
T Consensus 11 PL~EvlC~~I~dln~~~~~---at~E~l~~~L~~~yp~i~~Ps~e~l~~~L~~L 61 (80)
T PF10264_consen 11 PLPEVLCWVISDLNAAGQP---ATQETLREHLRKHYPGIAIPSQEVLYNTLGTL 61 (80)
T ss_pred eHHHHHHHHHHHHhccCCc---chHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Confidence 5777888899999887543 77888999999888777654444444444433
No 62
>PF11164 DUF2948: Protein of unknown function (DUF2948); InterPro: IPR021335 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=32.81 E-value=2.4e+02 Score=22.09 Aligned_cols=72 Identities=18% Similarity=0.291 Sum_probs=49.1
Q ss_pred ecccCCceEEEEeeeeeeecc---ccccccccceeecCcccccCCCC---CCCCceEEEEEEEEeecCCCCCccEEEEE
Q 017540 243 KIKKSPHTLVIHLKRFKYIEQ---LGRYKKLSYRVVFPLELKLSNTA---EDADIEYSLFAVVVHVGSGPNHGHYVSLV 315 (369)
Q Consensus 243 ~i~~~P~~L~i~l~R~~~~~~---~~~~~K~~~~v~~p~~l~l~~~~---~~~~~~Y~L~~vi~H~G~~~~~GHY~~~v 315 (369)
.+..--..|.+-++||.|... .........-+.|...+.+..-. +++....+|.||-.+.|. .-+||-.-..
T Consensus 29 ~~~~~~rrf~l~~NRF~WE~~~~~~~~~eR~rs~L~f~~V~~Vks~gi~~~~~d~vLsLLai~fe~~e-~p~G~v~L~f 106 (138)
T PF11164_consen 29 RWLPKERRFALLLNRFRWEDAERRGRPPERVRSALRFDRVLAVKSRGIDRKDPDAVLSLLAITFEPGE-APAGHVLLTF 106 (138)
T ss_pred eEcccCCEEEEEeeeeEeccCccCCCCCcEEEEEEEEccEeeeeecCCCCCCCCceEEEEEEEEEeCC-CCCcEEEEEE
Confidence 344556779999999999765 34455566666677665554422 345789999999999987 4566654443
No 63
>cd01269 PLX Pollux (PLX) Phosphotyrosine-binding (PTB) domain. Pollux (PLX) Phosphotyrosine-binding (PTB) domain. PLX is calmodulin-binding protein containing a TBC domain, which is conserved from yeast to man, but it only has an N-terminal PTB domain in mammals. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=32.28 E-value=1.9e+02 Score=22.14 Aligned_cols=31 Identities=13% Similarity=0.238 Sum_probs=23.4
Q ss_pred CCCCceEEEEEEEEeecCCCCCccEEEEEee
Q 017540 287 EDADIEYSLFAVVVHVGSGPNHGHYVSLVKS 317 (369)
Q Consensus 287 ~~~~~~Y~L~~vi~H~G~~~~~GHY~~~vr~ 317 (369)
..+...=+..|+|+-..+...+-||++||-+
T Consensus 77 ~qg~~~~dhFgFIcrEs~~~~~~~f~CyVFq 107 (129)
T cd01269 77 SQGIKHVDHFGFICRESPEPGLSQYICYVFQ 107 (129)
T ss_pred hcCCCCcceEEEEeccCCCCCcceEEEEEEE
Confidence 3445566889999998875556799999844
No 64
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=31.48 E-value=1.6e+02 Score=23.58 Aligned_cols=20 Identities=20% Similarity=0.228 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 017540 112 DAHEFLNFLLNELVDILEKE 131 (369)
Q Consensus 112 Da~Efl~~ll~~l~~~~~~~ 131 (369)
|..+....|...++......
T Consensus 78 ~~~~i~d~Ik~~~~~~~~~l 97 (158)
T TIGR00373 78 NYEKALDVLKRKLEETAKKL 97 (158)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 66677777777766655543
No 65
>KOG2906 consensus RNA polymerase III subunit C11 [Transcription]
Probab=30.79 E-value=1.2e+02 Score=22.06 Aligned_cols=68 Identities=13% Similarity=0.194 Sum_probs=32.5
Q ss_pred EeeeeeecCCCCccccccceeecCcccccCccHHHHHHhcCccceecCCCcccccccCCcceeeEEEeccc
Q 017540 176 LTNETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKK 246 (369)
Q Consensus 176 ~~~~~~C~~C~~~~~~~~~~~~l~l~i~~~~~l~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~ 246 (369)
......|..|+.+........ +-..+....+++.|..--.-+..+. ....|+.|+..+--..++.+.+
T Consensus 18 ~~~rf~C~tCpY~~~I~~ei~--~r~~~~~Kevd~vlgg~~a~~nv~~-t~~~Cp~Cgh~rayF~qlQtRS 85 (105)
T KOG2906|consen 18 SCNRFSCRTCPYVFPISREIS--SRKYPKLKEVDDVLGGDEAWENVDQ-TEATCPTCGHERAYFMQLQTRS 85 (105)
T ss_pred eEeeEEcCCCCceeeEeeeee--ccccCchhhhhhhcCCcccccchhh-ccCcCCCCCCCceEEEEeeecc
Confidence 356778999988643321111 1111223445555533111111111 1257999998665544444443
No 66
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=29.90 E-value=1.1e+02 Score=28.26 Aligned_cols=83 Identities=18% Similarity=0.225 Sum_probs=46.2
Q ss_pred hhHHHHHhhCChhHHHHHHhhhccC-CCCCc-chhhHHHHHHHHHHHHHhcccCCCccChHHHHHHHHhhccccCCCCCC
Q 017540 34 CNSVLQALYFCVPFREQLLDYYSNN-KNLGD-AEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQNELFRSYMHQ 111 (369)
Q Consensus 34 ~NsvLQ~L~~~p~f~~~l~~~~~~~-~~~~~-~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~qq 111 (369)
+--+.|.|-.+|+|++++=+..-.+ ..... ........|+.+|..|+.........-...+.+.+... .+.....
T Consensus 146 ~~eI~~~l~~~pe~~~LvGeEa~~q~~~~~~~e~e~~~~~l~~~Fs~lM~~~~~~i~~~v~~L~~r~~~~---~~~~~~~ 222 (411)
T KOG2757|consen 146 LEEIKQFLDTIPELRELVGEEAARQLKDLTSHEDEDSKKVLKLCFSRLMKAEENVIKIQVSKLVKRLQNE---LNGFNLT 222 (411)
T ss_pred HHHHHHHHHhChHHHHHhhHHHHHHHHhhccchhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhcc---ccccCcc
Confidence 3457889999999999985421111 11111 22456678999999999887655333333333333322 2233444
Q ss_pred hHHHHHHH
Q 017540 112 DAHEFLNF 119 (369)
Q Consensus 112 Da~Efl~~ 119 (369)
|..|.+..
T Consensus 223 d~~eli~~ 230 (411)
T KOG2757|consen 223 DLEELILK 230 (411)
T ss_pred cHHHHHHH
Confidence 55554433
No 67
>PRK09750 hypothetical protein; Provisional
Probab=28.75 E-value=1.7e+02 Score=19.00 Aligned_cols=38 Identities=13% Similarity=0.376 Sum_probs=26.2
Q ss_pred ceEEEEEEEEeecCCCCCccEEEEEeeCCcEEEEeCCcceeeChhhHHhhhcC
Q 017540 291 IEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGS 343 (369)
Q Consensus 291 ~~Y~L~~vi~H~G~~~~~GHY~~~vr~~~~W~~~nD~~V~~v~~~~v~~~~~~ 343 (369)
.+|++.|.|---|.+ .-+|.+|.|...+ .+|-.+.+++
T Consensus 2 ykY~I~Ati~KpGg~------------P~~W~r~s~~~mt---k~ECeK~~s~ 39 (64)
T PRK09750 2 YMYKITATIEKEGGT------------PTNWTRYSKSKLT---KSECEKMLSG 39 (64)
T ss_pred ceeEEEEEEECCCCC------------ccceeEecCCcCC---HHHHHHHhcc
Confidence 478888888877652 4579999999764 4455555444
No 68
>PF14690 zf-ISL3: zinc-finger of transposase IS204/IS1001/IS1096/IS1165
Probab=28.27 E-value=88 Score=18.84 Aligned_cols=33 Identities=27% Similarity=0.371 Sum_probs=20.5
Q ss_pred ccccccCCcce---eeEEE-----ecccCCceEEEEeeeee
Q 017540 227 FFCDKCCSLQE---AQKRM-----KIKKSPHTLVIHLKRFK 259 (369)
Q Consensus 227 ~~C~~C~~~~~---~~~~~-----~i~~~P~~L~i~l~R~~ 259 (369)
..|+.|+.... ..+.. .+..-|-+|.+..+||.
T Consensus 3 ~~Cp~Cg~~~~~~~g~~~r~i~~l~~~~~~~~L~i~~~R~~ 43 (47)
T PF14690_consen 3 PRCPHCGSPSVHRHGYKTRRIRHLPIGGRPVYLRIRKRRYR 43 (47)
T ss_pred ccCCCcCCCceECCceEEEEEeecccCCEEEEEEEEeEEEE
Confidence 56899986542 11222 24455788888888874
No 69
>cd02425 Peptidase_C39F A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family.
Probab=26.73 E-value=2.3e+02 Score=21.00 Aligned_cols=31 Identities=19% Similarity=0.146 Sum_probs=19.1
Q ss_pred ccEEEEEeeCCcEEEEeCC--cceeeChhhHHh
Q 017540 309 GHYVSLVKSHNHWLFFDDE--NVEMIDESAVQT 339 (369)
Q Consensus 309 GHY~~~vr~~~~W~~~nD~--~V~~v~~~~v~~ 339 (369)
|||+...+.++..+...|. ....++.++..+
T Consensus 85 ~~~~Vl~~~~~~~~~i~dp~~~~~~~~~~~l~~ 117 (126)
T cd02425 85 NHFVVLEKIKKNKVTIVDPAIGRIKISIDEFLE 117 (126)
T ss_pred CcEEEEEEEECCEEEEEcCCCCCEEECHHHHHh
Confidence 8999998864444444443 233567777664
No 70
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=26.58 E-value=1.2e+02 Score=19.64 Aligned_cols=49 Identities=14% Similarity=0.308 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhcccCCCccChHHHHHHHHhhccccCCCCCChHHHHHHHHHHHH
Q 017540 71 CLADLFTQIRAQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNEL 124 (369)
Q Consensus 71 ~l~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~qqDa~Efl~~ll~~l 124 (369)
.|+.+|..+....... ++..+|...+........ ++...+.+..++..+
T Consensus 1 ~l~~~F~~~D~d~~G~--i~~~el~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 49 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGY--ISKEELRRALKHLGRDMS---DEESDEMIDQIFREF 49 (66)
T ss_dssp HHHHHHHHHSTTSSSE--EEHHHHHHHHHHTTSHST---HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCccCC--CCHHHHHHHHHHhccccc---HHHHHHHHHHHHHHh
Confidence 3678888888866555 999999998887644333 334455555555444
No 71
>PF10748 DUF2531: Protein of unknown function (DUF2531); InterPro: IPR019684 This entry represents proteins with unknown function and appears to be restricted to Enterobacteriaceae.
Probab=25.48 E-value=98 Score=24.03 Aligned_cols=34 Identities=15% Similarity=0.367 Sum_probs=26.6
Q ss_pred CceEEEEEEEEeecCCCCCccEEEEEee-CCcEEEEeCCcc
Q 017540 290 DIEYSLFAVVVHVGSGPNHGHYVSLVKS-HNHWLFFDDENV 329 (369)
Q Consensus 290 ~~~Y~L~~vi~H~G~~~~~GHY~~~vr~-~~~W~~~nD~~V 329 (369)
-..++|.|||-. +++|++++.+ +++|.+.-...+
T Consensus 33 Ls~WrlqGiVg~------~~~~~gwl~~p~g~W~Rv~~g~~ 67 (132)
T PF10748_consen 33 LSQWRLQGIVGQ------GDRWIGWLQDPQGKWLRVRQGQV 67 (132)
T ss_pred cccceEccEECC------CCcEEEEEECCCCCeEEeccCCC
Confidence 357999999863 4589999988 899998875544
No 72
>KOG2935 consensus Ataxin 3/Josephin [General function prediction only]
Probab=25.26 E-value=8.9 Score=32.79 Aligned_cols=58 Identities=14% Similarity=0.328 Sum_probs=37.1
Q ss_pred EEEEEeecCCCCCccEEEEEeeCCcEEEEeCCccee--eChhhHHhhhcCcccCCCCCCceEEEEEEEeCC
Q 017540 296 FAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEM--IDESAVQTFFGSAQEYSSNTDHGYILFYESLGA 364 (369)
Q Consensus 296 ~~vi~H~G~~~~~GHY~~~vr~~~~W~~~nD~~V~~--v~~~~v~~~~~~~~~~~~~~~~~y~l~Y~r~~~ 364 (369)
.|+|||.-. ||++..|-++.||-+|--..-+ ++.-.+..+... ....+|-+|-.+-+.
T Consensus 104 rafICnl~e-----HWF~iRKfg~qWfnlnSllagPellSdtyls~FL~q------lq~egySIFVVkG~l 163 (315)
T KOG2935|consen 104 RAFICNLKE-----HWFTIRKFGKQWFNLNSLLAGPELLSDTYLSAFLAQ------LQQEGYSIFVVKGDL 163 (315)
T ss_pred hhhhhcchh-----hhhhHhhhcchhccchhhhcchHHHHHHHHHHHHHH------HHhCCeeEEEEecCC
Confidence 578998775 9999877799999999654422 233333322221 146778777766543
No 73
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=24.93 E-value=1.1e+02 Score=16.43 Aligned_cols=27 Identities=15% Similarity=0.146 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhcccCCCccChHHHHHHHH
Q 017540 71 CLADLFTQIRAQKKKTGVIAPKRFVQRLK 99 (369)
Q Consensus 71 ~l~~l~~~l~~~~~~~~~~~~~~~~~~l~ 99 (369)
.|+.+|..+....... |+..+|...+.
T Consensus 1 ~l~~~F~~~D~d~dG~--I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGF--IDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSE--EEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCc--CcHHHHHHHHH
Confidence 3677888887765544 88888887776
No 74
>cd02419 Peptidase_C39C A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family.
Probab=23.75 E-value=3.1e+02 Score=20.36 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=20.4
Q ss_pred CccEEEEEeeCCcEEEEeCC--cceeeChhhHHh
Q 017540 308 HGHYVSLVKSHNHWLFFDDE--NVEMIDESAVQT 339 (369)
Q Consensus 308 ~GHY~~~vr~~~~W~~~nD~--~V~~v~~~~v~~ 339 (369)
.|||+...+.++..+.+.|. ....++.++..+
T Consensus 83 ~g~~~Vl~~~~~~~~~i~dp~~~~~~~~~~el~~ 116 (127)
T cd02419 83 MNHFVVLKKVSRRRIVIHDPALGKRKLSLEEASR 116 (127)
T ss_pred CCEEEEEEEEcCCEEEEECCccCCEEEcHHHHHh
Confidence 38999988874444444442 344577877775
No 75
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=23.48 E-value=2.5e+02 Score=19.89 Aligned_cols=32 Identities=13% Similarity=0.328 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhcccCCCccChHHHHHHHHh
Q 017540 69 LTCLADLFTQIRAQKKKTGVIAPKRFVQRLKK 100 (369)
Q Consensus 69 ~~~l~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 100 (369)
+..+..+|+++....+....++..+|...+.+
T Consensus 9 ~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~ 40 (88)
T cd05029 9 IGLLVAIFHKYSGREGDKNTLSKKELKELIQK 40 (88)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHH
Confidence 44566667766654443445777777777753
No 76
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=23.45 E-value=78 Score=33.39 Aligned_cols=35 Identities=26% Similarity=0.434 Sum_probs=26.5
Q ss_pred CCceEEEEEEEEeecCCCCCccEEEEEee-CCcEEEEeCC
Q 017540 289 ADIEYSLFAVVVHVGSGPNHGHYVSLVKS-HNHWLFFDDE 327 (369)
Q Consensus 289 ~~~~Y~L~~vi~H~G~~~~~GHY~~~vr~-~~~W~~~nD~ 327 (369)
..++--|.||-. ..++|||+..++. ++.+|+||--
T Consensus 47 qgfmpvltgv~p----~~~sghwimlikg~gn~y~lfdpl 82 (1439)
T PF12252_consen 47 QGFMPVLTGVSP----RQDSGHWIMLIKGQGNQYYLFDPL 82 (1439)
T ss_pred cCCceeecCcCC----CCcCceeEEEEEcCCCceEEeccc
Confidence 456666777644 4677999999998 7789999843
No 77
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=23.39 E-value=3e+02 Score=22.58 Aligned_cols=10 Identities=30% Similarity=0.916 Sum_probs=7.9
Q ss_pred cccccccCCc
Q 017540 226 KFFCDKCCSL 235 (369)
Q Consensus 226 ~~~C~~C~~~ 235 (369)
.+.|+.|+..
T Consensus 136 ~F~Cp~Cg~~ 145 (178)
T PRK06266 136 GFRCPQCGEM 145 (178)
T ss_pred CCcCCCCCCC
Confidence 3889999964
No 78
>PF01088 Peptidase_C12: Ubiquitin carboxyl-terminal hydrolase, family 1; InterPro: IPR001578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C12 (ubiquitin C-terminal hydrolase family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. The type example is the human ubiquitin C-terminal hydrolase UCH-L1. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa and 100-200 kDa, IPR001394 from INTERPRO) []: this family are the 20-30 kDa ppeptides which includes the yeast yuh1. Yeast yuh1 protease is known to be active only against small ubiquitin conjugates, being inactive against conjugated beta-galactosidase []. A mammalian homologue, UCH (ubiquitin conjugate hydrolase), is one of the most abundant proteins in the brain []. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process, 0005622 intracellular; PDB: 1CMX_A 4DM9_A 2ETL_A 3IRT_A 3KW5_A 3IFW_A 2LEN_A 3KVF_A 2WDT_C 2WE6_B ....
Probab=22.57 E-value=1e+02 Score=26.19 Aligned_cols=25 Identities=24% Similarity=0.382 Sum_probs=19.4
Q ss_pred ccEEEEEeeCCcEEEEeCCcceeeC
Q 017540 309 GHYVSLVKSHNHWLFFDDENVEMID 333 (369)
Q Consensus 309 GHY~~~vr~~~~W~~~nD~~V~~v~ 333 (369)
=||+|||..+|+-|..|-.+-.++.
T Consensus 166 ~HFI~fV~~~G~LyELDG~k~~Pi~ 190 (214)
T PF01088_consen 166 FHFIAFVPVDGHLYELDGRKSGPID 190 (214)
T ss_dssp EEEEEEEEETTEEEEEETTSSS-EE
T ss_pred ccEEEEEeECCeEEEcCCCCCCCeE
Confidence 3999999999999998877655543
No 79
>KOG3911 consensus Nucleolar protein NOP52/RRP1 [RNA processing and modification]
Probab=21.90 E-value=3.1e+02 Score=25.03 Aligned_cols=59 Identities=17% Similarity=0.265 Sum_probs=40.0
Q ss_pred cchhhHHHHHHHHHHHHHhcccCCCccChHHHHHHHHhhccccCCCCCChH-HHHHHHHHHHHHHH
Q 017540 63 DAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDA-HEFLNFLLNELVDI 127 (369)
Q Consensus 63 ~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~qqDa-~Efl~~ll~~l~~~ 127 (369)
-....|+.....||+.||-+... +--.++-..|+.+...|.. .++ .-|++.|+..++.|
T Consensus 44 F~~~dflklWKGLfY~MWmqDkP---llQeeLa~~laqLv~~f~~---~~a~i~F~~~FwktM~rE 103 (378)
T KOG3911|consen 44 FDQDDFLKLWKGLFYCMWMQDKP---LLQEELADTLAQLVHIFTS---TEAQILFVSAFWKTMCRE 103 (378)
T ss_pred CCHHHHHHHHHhhHHHHhhcCCc---hHHHHHHHHHHHHHHHhhc---hHHHHHHHHHHHHHHhhh
Confidence 44568999999999999997654 5566677777776666654 122 45666666666543
No 80
>KOG2463 consensus Predicted RNA-binding protein Nob1p involved in 26S proteasome assembly [Posttranslational modification, protein turnover, chaperones]
Probab=21.49 E-value=1.1e+02 Score=27.71 Aligned_cols=37 Identities=22% Similarity=0.428 Sum_probs=26.6
Q ss_pred cccccccCCcceeeEEEecccCCceEEEEee-eeeeecc
Q 017540 226 KFFCDKCCSLQEAQKRMKIKKSPHTLVIHLK-RFKYIEQ 263 (369)
Q Consensus 226 ~~~C~~C~~~~~~~~~~~i~~~P~~L~i~l~-R~~~~~~ 263 (369)
+.+|++||.++.......+.+= --+..+++ ||+|+..
T Consensus 257 k~FCp~CG~~TL~K~aVsv~~d-G~~~~h~k~r~~~n~R 294 (376)
T KOG2463|consen 257 KDFCPSCGHKTLTKCAVSVDED-GNGQTHFKKRFQWNNR 294 (376)
T ss_pred hhcccccCCCeeeEEEEEecCC-CceeEEeecccccccC
Confidence 5689999998777777777665 44566666 8887554
No 81
>COG0093 RplN Ribosomal protein L14 [Translation, ribosomal structure and biogenesis]
Probab=21.49 E-value=1.6e+02 Score=22.25 Aligned_cols=34 Identities=24% Similarity=0.402 Sum_probs=24.3
Q ss_pred EEEEEEEeecCCCCCccEEEEEeeCCcEEEEeCCcceeeChh
Q 017540 294 SLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDES 335 (369)
Q Consensus 294 ~L~~vi~H~G~~~~~GHY~~~vr~~~~W~~~nD~~V~~v~~~ 335 (369)
-+.|||+..-. -+.|.+|.|+.|+|.-..-++++
T Consensus 57 V~~AViVRtkk--------~~rR~DGs~i~FddNA~Viin~~ 90 (122)
T COG0093 57 VVKAVVVRTKK--------EVRRPDGSYIKFDDNAAVIINPD 90 (122)
T ss_pred eEEEEEEEeCC--------ceEcCCCCEEEeCCceEEEECCC
Confidence 45677776543 25566999999999988777643
No 82
>cd02549 Peptidase_C39A A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are
Probab=20.55 E-value=3.8e+02 Score=20.28 Aligned_cols=37 Identities=8% Similarity=0.179 Sum_probs=23.8
Q ss_pred CCCccEEEEEeeC-CcEEEEeCCcc---eeeChhhHHhhhc
Q 017540 306 PNHGHYVSLVKSH-NHWLFFDDENV---EMIDESAVQTFFG 342 (369)
Q Consensus 306 ~~~GHY~~~vr~~-~~W~~~nD~~V---~~v~~~~v~~~~~ 342 (369)
...|||+..+..+ +..+.+.|-.- ..++.++..+...
T Consensus 91 ~~~gH~vVv~g~~~~~~~~i~DP~~~~~~~~~~~~f~~~w~ 131 (141)
T cd02549 91 TPSGHAMVVIGYDRKGNVYVNDPGGGRRLVVSFDEFEKAWK 131 (141)
T ss_pred CCCCeEEEEEEEcCCCCEEEECCCCCcCEEEeHHHHHHHHH
Confidence 3569999999765 55566666433 3556666665543
No 83
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=20.42 E-value=5e+02 Score=22.06 Aligned_cols=59 Identities=19% Similarity=0.201 Sum_probs=39.4
Q ss_pred chhhHHHHHHHHHHHHHhcccCCCccChHHHHHHHHhhccccCCCCCChHHHHHHHHHHHHHHH
Q 017540 64 AEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDI 127 (369)
Q Consensus 64 ~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~qqDa~Efl~~ll~~l~~~ 127 (369)
....+.+--+.||..||.+.+. ..-.++...++.+...+.... .+.-|+..++..+..|
T Consensus 36 ~~~~~~kLWKGLfy~mWmsDkp---l~Q~~la~~la~l~~~~~~~~--~~~~f~~~f~~tm~rE 94 (217)
T PF05997_consen 36 TELDMLKLWKGLFYCMWMSDKP---LVQEELAEELASLIHSFPSEK--AALLFLKAFWETMRRE 94 (217)
T ss_pred CHHHHHHHHHHHHHHHHhcCCc---hhHHHHHHHHHHHHHhhcChH--HHHHHHHHHHHHHHHH
Confidence 5667899999999999997654 445555555665544444322 5666777777766654
Done!