Query 017540
Match_columns 369
No_of_seqs 114 out of 1254
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 16:04:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017540.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017540hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y6e_A Ubiquitin carboxyl-term 100.0 3.2E-63 1.1E-67 459.8 28.3 328 18-368 4-364 (367)
2 2gfo_A Ubiquitin carboxyl-term 100.0 7.5E-62 2.6E-66 453.7 29.1 322 19-363 59-396 (396)
3 3i3t_A Ubiquitin carboxyl-term 100.0 1.3E-62 4.6E-67 454.3 23.6 330 20-365 1-353 (355)
4 3nhe_A Ubiquitin carboxyl-term 100.0 1.4E-62 4.9E-67 452.9 23.2 326 19-366 6-346 (348)
5 2ayn_A Ubiquitin carboxyl-term 100.0 3.4E-61 1.2E-65 452.2 27.6 324 19-367 11-398 (404)
6 1nb8_A Ubiquitin carboxyl-term 100.0 4.7E-61 1.6E-65 442.0 27.3 306 18-364 2-316 (353)
7 1vjv_A Ubiquitin carboxyl-term 100.0 3.3E-60 1.1E-64 446.6 27.8 298 19-364 21-415 (415)
8 3mhs_A Ubiquitin carboxyl-term 100.0 2.1E-58 7.1E-63 441.6 29.2 318 14-364 133-475 (476)
9 2f1z_A Ubiquitin carboxyl-term 100.0 1.1E-57 3.7E-62 440.2 26.5 305 19-364 172-485 (522)
10 3ihp_A Ubiquitin carboxyl-term 100.0 5.7E-56 1.9E-60 445.2 23.5 230 19-286 341-622 (854)
11 2vhf_A Ubiquitin carboxyl-term 100.0 2.1E-31 7.1E-36 235.6 13.6 220 21-326 8-308 (374)
12 3mp2_A Non-structural protein 97.6 0.001 3.4E-08 54.3 11.8 35 296-333 161-195 (211)
13 2fe8_A PP1AB, ORF1AB, replicas 96.9 0.029 9.8E-07 48.9 14.4 37 296-334 260-296 (315)
14 1qmy_A Protease, leader protea 94.2 0.021 7E-07 42.7 2.1 37 294-334 108-144 (167)
15 2ww6_A Fibritin, T4 fibritin; 69.4 2.6 8.9E-05 21.4 1.6 15 312-326 11-25 (27)
16 3o65_A Putative ataxin-3-like 57.1 10 0.00034 30.4 3.8 59 295-364 110-170 (191)
17 1qmy_A Protease, leader protea 56.1 16 0.00055 27.4 4.4 33 21-53 12-45 (167)
18 3a43_A HYPD, hydrogenase nicke 49.0 41 0.0014 25.3 5.9 19 175-193 66-84 (139)
19 3h0g_I DNA-directed RNA polyme 44.2 18 0.0006 26.2 3.1 16 178-193 25-40 (113)
20 3b79_A Toxin secretion ATP-bin 43.7 52 0.0018 23.8 5.9 42 309-361 79-126 (129)
21 1xv3_A Penaeidin-4D, PEN-4D; a 32.8 27 0.00093 20.4 2.0 28 16-43 9-37 (47)
22 1g9o_A NHE-RF; PDZ domain, com 31.4 1.1E+02 0.0037 20.3 5.5 51 307-363 26-87 (91)
23 1yuz_A Nigerythrin; rubrythrin 27.4 1.2E+02 0.004 24.4 5.7 22 168-189 160-181 (202)
24 2con_A RUH-035 protein, NIN on 26.1 25 0.00085 23.6 1.2 30 226-256 30-59 (79)
25 2lv7_A Calcium-binding protein 23.0 1.6E+02 0.0055 20.2 5.2 46 67-117 33-78 (100)
26 3qt1_I DNA-directed RNA polyme 22.7 37 0.0013 25.4 1.7 15 179-193 46-60 (133)
27 2edv_A FERM and PDZ domain-con 22.1 1.6E+02 0.0054 19.9 5.0 45 315-366 48-92 (96)
28 3k8u_A Putative ABC transporte 21.9 1.1E+02 0.0037 23.0 4.5 45 308-363 94-142 (156)
29 1wi2_A Riken cDNA 2700099C19; 21.8 1.9E+02 0.0066 19.7 5.5 52 307-366 40-102 (104)
30 2pa1_A PDZ and LIM domain prot 21.8 1.7E+02 0.006 19.0 5.1 39 318-363 47-85 (87)
31 3rii_A Ubiquitin carboxyl-term 20.4 60 0.0021 26.8 2.7 22 308-329 167-188 (233)
32 1ltl_A DNA replication initiat 20.3 3.9E+02 0.013 22.4 11.2 85 227-317 157-241 (279)
33 1tfi_A Transcriptional elongat 20.0 1.4E+02 0.0048 17.8 3.7 28 226-253 9-38 (50)
No 1
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=100.00 E-value=3.2e-63 Score=459.85 Aligned_cols=328 Identities=29% Similarity=0.500 Sum_probs=266.5
Q ss_pred CCCCccccccCCchhhhhHHHHHhhCChhHHHHHHhhhccCC----CCCcchhhHHHHHHHHHHHHHhcccCCCccChHH
Q 017540 18 EGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNK----NLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKR 93 (369)
Q Consensus 18 ~~~~~~GL~N~gntCy~NsvLQ~L~~~p~f~~~l~~~~~~~~----~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~ 93 (369)
..++++||.|+||||||||+||+|+++|+|+++++....... ........++.+|+.||..|+.+.. ..++|..
T Consensus 4 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~--~~i~P~~ 81 (367)
T 2y6e_A 4 IQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRD--AHVAPRM 81 (367)
T ss_dssp CCTTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSSC--SEECCHH
T ss_pred CCCCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCCC--CCcCHHH
Confidence 445699999999999999999999999999999987432111 1112345799999999999998654 3499999
Q ss_pred HHHHHHhhccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCcCCCCCCC-C---CCCCCcCCccccccc
Q 017540 94 FVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTN-G---LANGVRKEPLVTWVH 169 (369)
Q Consensus 94 ~~~~l~~~~~~~~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~i~ 169 (369)
|+..++...+.|..+.||||+|||.+||+.|++++...... + ..... ...+... . .++........++|.
T Consensus 82 ~~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~---~-~~~~~--~~~g~~~~~~a~~~w~~~~~~~~s~i~ 155 (367)
T 2y6e_A 82 FKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKK---P-YLELK--DANGRPDAVVAKEAWENHRLRNDSVIV 155 (367)
T ss_dssp HHHHHHHHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSC---C-CCCCC--CCCSCCHHHHHHHHHHHHHHHCCSHHH
T ss_pred HHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHhhccC---C-ccccc--cccCCchhHHHHHHHHHHHHhcCCccc
Confidence 99999999999999999999999999999999886432110 0 00000 0000000 0 000000112457899
Q ss_pred cccceeEeeeeeecCCCCccccccceeecCcccccC-------------------ccHHHHHHhcCccceecCCCccccc
Q 017540 170 KNFQGILTNETRCLRCETVTARDETFFDLSLDIEQN-------------------SSITSCLKNFSSTETLNAEDKFFCD 230 (369)
Q Consensus 170 ~lF~~~~~~~~~C~~C~~~~~~~~~~~~l~l~i~~~-------------------~~l~~~L~~~~~~e~~~~~~~~~C~ 230 (369)
++|+|.+.+.++|..|++.+...++|+.|+|++|.. .+|+++|+.++.+|.+++++.+.|+
T Consensus 156 ~~F~G~l~s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~f~~~E~l~~~~~~~C~ 235 (367)
T 2y6e_A 156 DTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRDCIELFTTMETLGEHDPWYCP 235 (367)
T ss_dssp HHHCEEEEEEEECTTTCCEEEEEEEESSEEEECCC-------------------CEEHHHHHHHHTSCEECCC-CCEEET
T ss_pred cccCcEEeeeEEeCCCCCEeeeEccCeeEEeeCCCCcCCcceeeeeccccccCCCCCHHHHHHHhcccccCCCCCCccCC
Confidence 999999999999999999999999999999999752 5899999999999999999999999
Q ss_pred ccCCcceeeEEEecccCCceEEEEeeeeeeeccccccccccceeecCc-ccccCCCCCC---CCceEEEEEEEEeecCCC
Q 017540 231 KCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPL-ELKLSNTAED---ADIEYSLFAVVVHVGSGP 306 (369)
Q Consensus 231 ~C~~~~~~~~~~~i~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~p~-~l~l~~~~~~---~~~~Y~L~~vi~H~G~~~ 306 (369)
+|+....+.++..|.++|++|+|+|+||.++.. ...|+...|.||. .|||..++.. ....|+|+|||+|.|. .
T Consensus 236 ~C~~~~~a~K~~~i~~lP~vL~i~LkRF~~~~~--~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~-~ 312 (367)
T 2y6e_A 236 NCKKHQQATKKFDLWSLPKILVVHLKRFSYNRY--WRDKLDTVVEFPIRGLNMSEFVCNLSARPYVYDLIAVSNHYGA-M 312 (367)
T ss_dssp TTTEEECCEEEEEEEECCSEEEEEEECEEECSS--CEEECCCCEECCSSCEECGGGBSCSSSCCCEEEEEEEEEEECS-S
T ss_pred CCCCCceEEEEEEEecCCcEEEEEEeCeeecCc--cceecCceEEecCCcCChhhhccCCCCCCceEEEEEEeecCCC-C
Confidence 999999999999999999999999999998754 5689999999997 6999998854 4689999999999998 8
Q ss_pred CCccEEEEEee--CCcEEEEeCCcceeeChhhHHhhhcCcccCCCCCCceEEEEEEEeCCCCCC
Q 017540 307 NHGHYVSLVKS--HNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYESLGAGSNK 368 (369)
Q Consensus 307 ~~GHY~~~vr~--~~~W~~~nD~~V~~v~~~~v~~~~~~~~~~~~~~~~~y~l~Y~r~~~~~~~ 368 (369)
++|||+||+|. +++||+|||+.|+++++++|. ..+||||||+|.+....+
T Consensus 313 ~~GHY~a~~~~~~~~~W~~fnD~~V~~v~~~~v~------------~~~aYiLfY~r~~~~~~~ 364 (367)
T 2y6e_A 313 GVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIV------------TKAAYVLFYQRRDDEFYK 364 (367)
T ss_dssp SSCEEEEEEECTTTCCEEEEETTEEEECCGGGTS------------STTEEEEEEEECCC----
T ss_pred CCCeeeEEEEcCCCCeEEEECCCCceECCHHHcC------------CCCcEEEEEEEcCCCCCC
Confidence 99999999998 689999999999999999998 789999999999876543
No 2
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=100.00 E-value=7.5e-62 Score=453.66 Aligned_cols=322 Identities=32% Similarity=0.545 Sum_probs=264.7
Q ss_pred CCCccccccCCchhhhhHHHHHhhCChhHHHHHHhhhcc----CCCCCcchhhHHHHHHHHHHHHHhcccCCCccChHHH
Q 017540 19 GERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSN----NKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRF 94 (369)
Q Consensus 19 ~~~~~GL~N~gntCy~NsvLQ~L~~~p~f~~~l~~~~~~----~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~ 94 (369)
+++++||.|+||||||||+||+|+++|+|+++++..... .........+++.+|..|+..||.+... .++|..|
T Consensus 59 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~--~i~P~~f 136 (396)
T 2gfo_A 59 GPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYR--YISPKDF 136 (396)
T ss_dssp STTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSCEE--EECCHHH
T ss_pred CCCcccccccCCchhHhHHHHHhhCCHHHHHHHHcCcchhhhcccCCCCcccHHHHHHHHHHHHHHcCCCc--eECHHHH
Confidence 466999999999999999999999999999999864211 0111123457889999999999987643 4999999
Q ss_pred HHHHHhhccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCcCCCCCCC----CCCCCCcCCcccccccc
Q 017540 95 VQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTN----GLANGVRKEPLVTWVHK 170 (369)
Q Consensus 95 ~~~l~~~~~~~~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~~ 170 (369)
+..++...+.|..+.||||+|||.+||+.|++++......... . .....+... ..++........++|.+
T Consensus 137 ~~~l~~~~~~f~~~~QqDA~EFl~~LLd~L~~el~~~~~~~~~----~--~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~ 210 (396)
T 2gfo_A 137 KITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRY----K--EENNDHLDDFKAAEHAWQKHKQLNESIIVA 210 (396)
T ss_dssp HHHHHHHCGGGSSSSCCCHHHHHHHHHHHHHHHHCCCCC---------------TTSCHHHHHHHHHHHHHHHCCSHHHH
T ss_pred HHHHHHhchhhcCCCCCChHHHHHHHHHHHHHHHhhhcccccc----c--cccccccchhhHHHHHHHHhhhccCCccch
Confidence 9999999999999999999999999999999987432110000 0 000000000 00000001124578999
Q ss_pred ccceeEeeeeeecCCCCccccccceeecCcccccC--ccHHHHHHhcCccceecCCCcccccccCCcceeeEEEecccCC
Q 017540 171 NFQGILTNETRCLRCETVTARDETFFDLSLDIEQN--SSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSP 248 (369)
Q Consensus 171 lF~~~~~~~~~C~~C~~~~~~~~~~~~l~l~i~~~--~~l~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P 248 (369)
+|+|++.+.++|..|+..+...++|+.|+|++|.. .+|+++|+.++.+|.+++++.+.|++|+....+.++..|.++|
T Consensus 211 lF~G~l~s~i~C~~C~~~s~~~e~f~~LsL~ip~~~~~sL~~~L~~f~~~E~l~~~n~~~C~~C~~~~~a~k~~~i~~lP 290 (396)
T 2gfo_A 211 LFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLP 290 (396)
T ss_dssp HHCEEEEEEEEETTTCCEEEEEEEESSEEECCSCSSEEEHHHHHHHHTSCEEECSTTCEEETTTTEEECEEEEEEEEECC
T ss_pred hhCcEEEEEEEeCCCCceecccccceeeeecccccccCCHHHHHHHhCCcccccCCcccccCCcccccceEEEEEEecCC
Confidence 99999999999999999999999999999999874 6899999999999999999999999999999999999999999
Q ss_pred ceEEEEeeeeeeeccccccccccceeecCc-ccccCCCCCC---CCceEEEEEEEEeecCCCCCccEEEEEee--CCcEE
Q 017540 249 HTLVIHLKRFKYIEQLGRYKKLSYRVVFPL-ELKLSNTAED---ADIEYSLFAVVVHVGSGPNHGHYVSLVKS--HNHWL 322 (369)
Q Consensus 249 ~~L~i~l~R~~~~~~~~~~~K~~~~v~~p~-~l~l~~~~~~---~~~~Y~L~~vi~H~G~~~~~GHY~~~vr~--~~~W~ 322 (369)
++|+|+|+||.++.. ...|+...|.||. .|||..++.. ...+|+|+|||+|.| +.++|||+||+|. +++||
T Consensus 291 ~vLiihLkRF~~~~~--~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G-~~~~GHY~a~v~~~~~~~W~ 367 (396)
T 2gfo_A 291 PVLLVHLKRFSYDGR--WKQKLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYG-GLDGGHYTAYCKNAARQRWF 367 (396)
T ss_dssp SEEEEEECCEEECSS--SEEECCCEEECCSSCBCCGGGBCSCCSSCCCBEEEEEEEEES-CTTTCEEEEEEEETTTTEEE
T ss_pred cEEEEEecceeccCc--cceecCceEecchhhccccccccCCCCCCceEEEEEEEEecC-CCCCCceEEEEcCCCCCCEE
Confidence 999999999998764 4679999999996 6999998864 357899999999999 4999999999998 58999
Q ss_pred EEeCCcceeeChhhHHhhhcCcccCCCCCCceEEEEEEEeC
Q 017540 323 FFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYESLG 363 (369)
Q Consensus 323 ~~nD~~V~~v~~~~v~~~~~~~~~~~~~~~~~y~l~Y~r~~ 363 (369)
+|||+.|+++++++|. +.+||||||+|++
T Consensus 368 ~fnD~~V~~v~~~~v~------------~~~aYiLfY~r~~ 396 (396)
T 2gfo_A 368 KFDDHEVSDISVSSVK------------SSAAYILFYTSLG 396 (396)
T ss_dssp EEETTEEEECCHHHHS------------CTTEEEEEEECC-
T ss_pred EEeCCCeEECCHHHcC------------CCCceEEEEEEcC
Confidence 9999999999999998 7899999999975
No 3
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=100.00 E-value=1.3e-62 Score=454.32 Aligned_cols=330 Identities=29% Similarity=0.483 Sum_probs=260.9
Q ss_pred CCccccccCCchhhhhHHHHHhhCChhHHHHHHhhhccC-CCCCcchhhHHHHHHHHHHHHHhcccCCCccChHHHHHHH
Q 017540 20 ERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNN-KNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRL 98 (369)
Q Consensus 20 ~~~~GL~N~gntCy~NsvLQ~L~~~p~f~~~l~~~~~~~-~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~l 98 (369)
++++||.|+||||||||+||+|+++|+||++++...... ........+++.+|+.||..|+.+... ..++|..|...+
T Consensus 1 TG~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~-~~v~p~~~~~~l 79 (355)
T 3i3t_A 1 SGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWHPDSC-EAVNPTRFRAVF 79 (355)
T ss_dssp --CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC------CHHHHHHHHHHHHTSSCSSC-CCBCCHHHHHHH
T ss_pred CCCcCcEECCcchHHHHHHHHHhCCHHHHHHHHhchHHHhcCCCCchhHHHHHHHHHHHHHhcCCCC-CcccHHHHHHHH
Confidence 468999999999999999999999999999998642111 112223457999999999999987543 349999999999
Q ss_pred HhhccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCc-CC-CCCCCCCC-----------CCCcCCccc
Q 017540 99 KKQNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEK-TA-NGPTNGLA-----------NGVRKEPLV 165 (369)
Q Consensus 99 ~~~~~~~~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~-----------~~~~~~~~~ 165 (369)
....+.|..+.||||+|||.+||+.|++++.................. .. .+...... +........
T Consensus 80 ~~~~~~f~~~~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (355)
T 3i3t_A 80 QKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLERED 159 (355)
T ss_dssp HHHCGGGCSSCCCBHHHHHHHHHHHHHHHHCCC----------------------------CCHHHHHHHHHHHHHHHCC
T ss_pred HHhChhhCCCCccCHHHHHHHHHHHHHHHHhhhccCCCcccccCcccCccccccccccCCCCCHHHHHHHHHHHhhhccC
Confidence 999999999999999999999999999988543221110000000000 00 00000000 000011234
Q ss_pred cccccccceeEeeeeeecCCCCccccccceeecCcccccC------ccHHHHHHhcCccceecCCCcccccccCCcceee
Q 017540 166 TWVHKNFQGILTNETRCLRCETVTARDETFFDLSLDIEQN------SSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQ 239 (369)
Q Consensus 166 ~~i~~lF~~~~~~~~~C~~C~~~~~~~~~~~~l~l~i~~~------~~l~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~ 239 (369)
++|.++|.|.+...++|..|++.+...++|..|+|++|.. .+|+++|+.++.+|.+++.+.+.|++|+....+.
T Consensus 160 s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~~~~~~~~sl~~~L~~~~~~e~l~~~n~~~C~~C~~~~~a~ 239 (355)
T 3i3t_A 160 SKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESENAPVCDRCRQKTRST 239 (355)
T ss_dssp SHHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCCC-------CBHHHHHHHHHCCEEECGGGCCCCSSSCCCCCEE
T ss_pred CcccccccEEEEeeEEeCCCCCCceeeccceeecccCCccccccCccCHHHHHHHhCCccccCCCCCeeCCCCCCccceE
Confidence 6799999999999999999999999999999999999864 4999999999999999999999999999999999
Q ss_pred EEEecccCCceEEEEeeeeeeeccccccccccceeecCc-ccccCCCCCC--CCceEEEEEEEEeecCCCCCccEEEEEe
Q 017540 240 KRMKIKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPL-ELKLSNTAED--ADIEYSLFAVVVHVGSGPNHGHYVSLVK 316 (369)
Q Consensus 240 ~~~~i~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~p~-~l~l~~~~~~--~~~~Y~L~~vi~H~G~~~~~GHY~~~vr 316 (369)
++..|.++|++|+|+|+||.++. +...|+...|.||. .|+|..++.. ....|+|+|||+|.|+ .++|||+||+|
T Consensus 240 k~~~i~~lP~vL~i~lkRF~~~~--~~~~K~~~~v~fp~~~l~l~~~~~~~~~~~~Y~L~avv~H~G~-~~~GHY~~~~~ 316 (355)
T 3i3t_A 240 KKLTVQRFPRILVLHLNRFSASR--GSIKKSSVGVDFPLQRLSLGDFASDKAGSPVYQLYALCNHSGS-VHYGHYTALCR 316 (355)
T ss_dssp EEEEEEECCSEEEEEECCEECCS--SCCEECCCCCBCCSSCEECGGGBC----CCEEEEEEEEEEEEE-TTEEEEEEEEE
T ss_pred EEEEcccCChheEEEhhheecCC--CCceECCcceeCCccccCchhhccCCCCCcceEEEEEEEecCC-CCCCeEEEEEE
Confidence 99999999999999999998764 47789999999995 5999998754 4678999999999996 89999999999
Q ss_pred eCCcEEEEeCCcceeeChhhHHhhhcCcccCCCCCCceEEEEEEEeCCC
Q 017540 317 SHNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYESLGAG 365 (369)
Q Consensus 317 ~~~~W~~~nD~~V~~v~~~~v~~~~~~~~~~~~~~~~~y~l~Y~r~~~~ 365 (369)
.++.|++|||+.|+++++++|. ..+||||||+|++..
T Consensus 317 ~~~~W~~~nD~~V~~v~~~~v~------------~~~aYiLfY~r~~~~ 353 (355)
T 3i3t_A 317 CQTGWHVYNDSRVSPVSENQVA------------SSEGYVLFYQLMQEP 353 (355)
T ss_dssp ETTEEEEEETTEEEEECHHHHH------------TSCCSEEEEEEC---
T ss_pred cCCeEEEEcCCCcEECCHHHcC------------CCCcEEEEEEeccCC
Confidence 9999999999999999999998 789999999999865
No 4
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=100.00 E-value=1.4e-62 Score=452.88 Aligned_cols=326 Identities=29% Similarity=0.495 Sum_probs=268.2
Q ss_pred CCCccccccCCchhhhhHHHHHhhCChhHHHHHHhhhccC--CCCCcchhhHHHHHHHHHHHHHhcccCCCccChHHHHH
Q 017540 19 GERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNN--KNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQ 96 (369)
Q Consensus 19 ~~~~~GL~N~gntCy~NsvLQ~L~~~p~f~~~l~~~~~~~--~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~ 96 (369)
.++++||.|+||||||||+||+|+++|+||++++...... ........+++.+|..||..|+... ....++|..|+.
T Consensus 6 ~~g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~-~~~~~~p~~~~~ 84 (348)
T 3nhe_A 6 AQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSS-PNDVVSPSEFKT 84 (348)
T ss_dssp CCSCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSCSSCCTTHHHHHHHHHHHHHHTTCC-TTCEECCHHHHH
T ss_pred CCCCCCCCcCCccHHHHHHHHHHhcCHHHHHHHhcchhhHhhccCCCcccHHHHHHHHHHHHHHcCC-CCCccCHHHHHH
Confidence 4569999999999999999999999999999998743221 1223456789999999999999633 234599999999
Q ss_pred HHHhhccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCcCCCCCC----CCCCCCCcCCcccccccccc
Q 017540 97 RLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPT----NGLANGVRKEPLVTWVHKNF 172 (369)
Q Consensus 97 ~l~~~~~~~~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~lF 172 (369)
.+....+.|..+.||||+|||.+||+.|++++.......... . ....... +...+........++|.++|
T Consensus 85 ~l~~~~~~f~~~~QqDa~Efl~~lLd~L~~e~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F 158 (348)
T 3nhe_A 85 QIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSN----P--ENLDHLPDDEKGRQMWRKYLEREDSRIGDLF 158 (348)
T ss_dssp HHHHHSGGGSSSCCBCHHHHHHHHHHHHHHHHCSCSSCCCCC----C--CCCTTSCHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHhhhhhCCCCccCHHHHHHHHHHHHHHHHhhcccCCCCC----c--cccccCCchHHHHHHHHHHHhhcCCcccccc
Confidence 999999999999999999999999999999875321110000 0 0000000 00000001123457799999
Q ss_pred ceeEeeeeeecCCCCccccccceeecCcccccC----ccHHHHHHhcCccceecCCCcccccccCCcceeeEEEecccCC
Q 017540 173 QGILTNETRCLRCETVTARDETFFDLSLDIEQN----SSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSP 248 (369)
Q Consensus 173 ~~~~~~~~~C~~C~~~~~~~~~~~~l~l~i~~~----~~l~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P 248 (369)
.|.+...++|..|++.+...++|+.|+|+++.. .+|+++|+.++.+|.++|++++.|++|+....+.++..|.++|
T Consensus 159 ~g~~~~~~~C~~C~~~s~~~e~f~~LsL~i~~~~~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP 238 (348)
T 3nhe_A 159 VGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFP 238 (348)
T ss_dssp CEEEEEEEEETTTCCEEEEEEEESSEEECCCSSCSSCEEHHHHHHHHHSCEEECGGGCCEETTTTEECCEEEEEEEEECC
T ss_pred ceEEEEEEEcCCCCCEeeeeccceEEeeeCCCcccCCCCHHHHHHHhcCceEecCCCceECCCCCCcccEEEEEEeecCC
Confidence 999999999999999999999999999999874 4999999999999999999999999999999999999999999
Q ss_pred ceEEEEeeeeeeeccccccccccceeecCc-ccccCCCCCC--CCceEEEEEEEEeecCCCCCccEEEEEee--CCcEEE
Q 017540 249 HTLVIHLKRFKYIEQLGRYKKLSYRVVFPL-ELKLSNTAED--ADIEYSLFAVVVHVGSGPNHGHYVSLVKS--HNHWLF 323 (369)
Q Consensus 249 ~~L~i~l~R~~~~~~~~~~~K~~~~v~~p~-~l~l~~~~~~--~~~~Y~L~~vi~H~G~~~~~GHY~~~vr~--~~~W~~ 323 (369)
++|+|+|+||.++. +...|+...|.||. .|||..++.. ....|+|+|||+|.|+ ..+|||+||+|. +++|++
T Consensus 239 ~vL~i~lkRf~~~~--~~~~K~~~~v~fp~~~ldl~~~~~~~~~~~~Y~L~avv~H~G~-~~~GHY~~~~~~~~~~~W~~ 315 (348)
T 3nhe_A 239 KILVLHLKRFSESR--IRTSKLTTFVNFPLRDLDLREFASENTNHAVYNLYAVSNHSGT-TMGGHYTAYCRSPGTGEWHT 315 (348)
T ss_dssp SEEEEEECCBCCCS--SCCCBCCCCEECCSSCEECGGGBCTTCCCCEEEEEEEEEEEEC-SSCEEEEEEEECTTTCCEEE
T ss_pred ceEEEEEEcccccC--CceeecCcceeccCCcCCHhhhcCCCCCCCcEEEEEEEEccCC-CCCcccEEEEccCCCCcEEE
Confidence 99999999998755 47789999999995 6999998854 5678999999999996 899999999998 789999
Q ss_pred EeCCcceeeChhhHHhhhcCcccCCCCCCceEEEEEEEeCCCC
Q 017540 324 FDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYESLGAGS 366 (369)
Q Consensus 324 ~nD~~V~~v~~~~v~~~~~~~~~~~~~~~~~y~l~Y~r~~~~~ 366 (369)
|||+.|+++++++|. ..+||||||+|++..+
T Consensus 316 ~nD~~V~~v~~~~v~------------~~~aY~LfY~r~~~~~ 346 (348)
T 3nhe_A 316 FNDSSVTPMSSSQVR------------TSDAYLLFYELASPPS 346 (348)
T ss_dssp EETTEEEEECGGGTC------------CTTEEEEEEEECC---
T ss_pred EeCCCceECCHHHcC------------CCCceEEEEEecCCCC
Confidence 999999999999997 7899999999998754
No 5
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=100.00 E-value=3.4e-61 Score=452.23 Aligned_cols=324 Identities=26% Similarity=0.337 Sum_probs=261.1
Q ss_pred CCCccccccCCchhhhhHHHHHhhCChhHHHHHHhhhccC--CCCCcchhhHHHHHHHHHHHHHhcccCCCccChHHHHH
Q 017540 19 GERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNN--KNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQ 96 (369)
Q Consensus 19 ~~~~~GL~N~gntCy~NsvLQ~L~~~p~f~~~l~~~~~~~--~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~ 96 (369)
...++||.|+||||||||+||+|+++|+||++++.+.... ........+++++|+.||..|+.+. ..+.|..|+.
T Consensus 11 ~~~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~---~~v~P~~~~~ 87 (404)
T 2ayn_A 11 MELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTS---SSIPPIILLQ 87 (404)
T ss_dssp CCCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC------CHHHHHHHHHHHHHHHHHHHC---SEECCHHHHH
T ss_pred cCCCCCcccCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCCCCcccHHHHHHHHHHHHHhcCC---CcCChHHHHH
Confidence 4458999999999999999999999999999999864331 1112345689999999999999864 4599999999
Q ss_pred HHHhhccccC------CCCCChHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCcCCCCCCCCCCCCCcCCcccccccc
Q 017540 97 RLKKQNELFR------SYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHK 170 (369)
Q Consensus 97 ~l~~~~~~~~------~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 170 (369)
.+....+.|. .+.||||+|||.+||+.|++++.... . ....+ .....++........++|.+
T Consensus 88 ~l~~~~~~f~~~~~~~~~~QqDA~Efl~~lLd~L~~~~~~~~----~-----~~~~e---~~~~~~~~~~~~~~~s~i~~ 155 (404)
T 2ayn_A 88 FLHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIE----D-----DSVKE---TDSSSASAATPSKKKSLIDQ 155 (404)
T ss_dssp HHHHHCGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCC----C-----C---------------------CCHHHH
T ss_pred HHHHhCchhhccccCCCccccCHHHHHHHHHHHHHHHhcccc----C-----Ccccc---cchhhhhhhhccccCchhhh
Confidence 9998888776 58999999999999999998763210 0 00000 00111122233445678999
Q ss_pred ccceeEeeeeeecCCCCcc--ccccceeecCcccccC-ccHHHHHHhcCccceecCCCcccccccCCcceeeEEEecccC
Q 017540 171 NFQGILTNETRCLRCETVT--ARDETFFDLSLDIEQN-SSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKS 247 (369)
Q Consensus 171 lF~~~~~~~~~C~~C~~~~--~~~~~~~~l~l~i~~~-~~l~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~ 247 (369)
+|+|.+...++|..|++.+ ...++|+.|+|+++.. .+|+++|+.++..+ +. +.|++|+....+.++..|.++
T Consensus 156 ~F~G~l~s~i~C~~C~~~s~s~~~e~f~~Lsl~i~~~~~~l~~~L~~~~~e~-l~----~~c~~c~~~~~~~k~~~i~~l 230 (404)
T 2ayn_A 156 FFGVEFETTMKCTESEEEEVTKGKENQLQLSCFINQEVKYLFTGLKLRLQEE-IT----KQSPTLQRNALYIKSSKISRL 230 (404)
T ss_dssp HTCEEEEEEEEESSSCCCCCBCCEEEESSEEEECSSSCCBHHHHHHHTTEEC-CC----CEETTTTEECCEEEEEEEEEC
T ss_pred hccEEEEEEEEecCCCCccCceeeccCceEEeecCCCcccHHHHHHHhcccc-ee----ecchhhCCccceeeeeeHhhC
Confidence 9999999999999999984 7899999999999875 58999999988744 33 789999998899999999999
Q ss_pred CceEEEEeeeeeeeccccccccccceeecCcccccCCCCCC---------------------------------------
Q 017540 248 PHTLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTAED--------------------------------------- 288 (369)
Q Consensus 248 P~~L~i~l~R~~~~~~~~~~~K~~~~v~~p~~l~l~~~~~~--------------------------------------- 288 (369)
|++|+|+|+||.++..++...|+...|.||..|||..|+..
T Consensus 231 P~vL~i~LkRF~~~~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (404)
T 2ayn_A 231 PAYLTIQMVRFFYKEKESVNAKVLKDVKFPLMLDMYELCTPELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEVK 310 (404)
T ss_dssp CSSEEEEEECBCCCCSSSSCCBCCCCCBCCSEEECGGGBCHHHHHHTTTTTGGGTCTTC---------------------
T ss_pred CCceEEEEEEEEEecccCceeccCceeccCceeEHhHhcChhhhhhcchhhhHHhhhhcccchhhhhhcccccccccccc
Confidence 99999999999998877788999999999999999887632
Q ss_pred -------------CCceEEEEEEEEeecCCCCCccEEEEEee-CCcEEEEeCCcceeeChhhHHhhhcCcccCCCCCCce
Q 017540 289 -------------ADIEYSLFAVVVHVGSGPNHGHYVSLVKS-HNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHG 354 (369)
Q Consensus 289 -------------~~~~Y~L~~vi~H~G~~~~~GHY~~~vr~-~~~W~~~nD~~V~~v~~~~v~~~~~~~~~~~~~~~~~ 354 (369)
....|+|+|||+|.|.+.++|||+||+|. +++||+|||+.|+++++++|....+|+ .+.+|
T Consensus 311 ~e~~~~~~~~~~~~~~~Y~L~avv~H~G~s~~~GHY~a~v~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~-----~~~~a 385 (404)
T 2ayn_A 311 YEPFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSGGG-----DWHIA 385 (404)
T ss_dssp -CCCCCSCTTTTCCCSEEEEEEEEEEESSSTTSSEEEEEEEEETTEEEEEBTTBCCCBCHHHHGGGGSSS-----SSCEE
T ss_pred ccccccccccCcCCCceEEEEEEEEecCCCCCCCCeEEEEECCCCeEEEeecccceecCHHHHHhhhCCC-----CCceE
Confidence 24889999999999987999999999998 999999999999999999999776553 27889
Q ss_pred EEEEEEEeCCCCC
Q 017540 355 YILFYESLGAGSN 367 (369)
Q Consensus 355 y~l~Y~r~~~~~~ 367 (369)
|||||+|.+....
T Consensus 386 YiLfY~r~~~~~~ 398 (404)
T 2ayn_A 386 YVLLYGPRRVEIM 398 (404)
T ss_dssp EEEEEECC-----
T ss_pred EEEEEEecCCCCC
Confidence 9999999987643
No 6
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=100.00 E-value=4.7e-61 Score=442.05 Aligned_cols=306 Identities=25% Similarity=0.448 Sum_probs=256.4
Q ss_pred CCCCccccccCCchhhhhHHHHHhhCChhHHHHHHhhhccCCCCCcchhhHHHHHHHHHHHHHhcccCCCccChHHHHHH
Q 017540 18 EGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQR 97 (369)
Q Consensus 18 ~~~~~~GL~N~gntCy~NsvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~ 97 (369)
+.++++||.|+||||||||+||+|+++|+||++++..... ......++..+|+.||..|+.+.. ++.|..++..
T Consensus 2 ~~~g~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~~---~~~~~~~~~~~l~~lf~~l~~~~~---~~~~~~l~~~ 75 (353)
T 1nb8_A 2 KHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTE---GDDSSKSVPLALQRVFYELQHSDK---PVGTKKLTKS 75 (353)
T ss_dssp CCSSCCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCCT---TSCTTTCHHHHHHHHHHHHHHCSS---CBCCHHHHHH
T ss_pred CCCCCCCcccCchhhHHHHHHHHHHCCHHHHHHHHhCCCC---CCcccccHHHHHHHHHHHHhhcCC---CCCCHHHHhh
Confidence 3467999999999999999999999999999999865322 123345788999999999998643 4788888877
Q ss_pred HHhhccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCcCCCCCCCCCCCCCcCCccccccccccceeEe
Q 017540 98 LKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILT 177 (369)
Q Consensus 98 l~~~~~~~~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lF~~~~~ 177 (369)
++ ...|..+.||||+||+.+||+.|++++... ...++|.++|+|.+.
T Consensus 76 ~~--~~~~~~~~QqDA~EFl~~LLd~L~~~~~~~-------------------------------~~~s~i~~~F~g~~~ 122 (353)
T 1nb8_A 76 FG--WETLDSFMQHDVQELCRVLLDNVENKMKGT-------------------------------CVEGTIPKLFRGKMV 122 (353)
T ss_dssp HT--CCBTTTTTTSCHHHHHHHHHHHHHHHTTTS-------------------------------TTTTHHHHHHCEEEE
T ss_pred cC--CCCCCcccchhHHHHHHHHHHHHHHHhcCC-------------------------------CccchhhhhceeEEE
Confidence 74 356889999999999999999999865310 123579999999999
Q ss_pred eeeeecCCCCccccccceeecCcccccCccHHHHHHhcCccceecCCCcccccccCCcceeeEEEecccCCceEEEEeee
Q 017540 178 NETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKR 257 (369)
Q Consensus 178 ~~~~C~~C~~~~~~~~~~~~l~l~i~~~~~l~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~~L~i~l~R 257 (369)
+.++|..|+..+...++|+.|+|+++...++.++|+.++.+|.+++++.+.|+.|+ ...+.++..|.++|++|+|+|+|
T Consensus 123 ~~i~C~~C~~~s~~~e~f~~LsL~i~~~~~l~~~L~~~~~~E~l~~~~~~~C~~c~-~~~a~k~~~i~~lP~vL~i~LkR 201 (353)
T 1nb8_A 123 SYIQCKEVDYRSDRREDYYDIQLSIKGKKNIFESFVDYVAVEQLDGDNKYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMR 201 (353)
T ss_dssp EEEEESSSCCEEEEEEEESCEEECCTTCSBHHHHHHHHTCCEEECTTTCEECGGGC-EECEEEEEEESCCCSEEEEEECC
T ss_pred EEEEeccCCCeeceeeeeEEEEEEECCCcchHHHHHHhhCccccCCCccccCCcCc-cEeeEEEEEhhcCCCceEEEEec
Confidence 99999999999999999999999999999999999999999999999999999996 46788999999999999999999
Q ss_pred eeeeccccccccccceeecCcccccCCCCCC----CCceEEEEEEEEeecCCCCCccEEEEEee--CCcEEEEeCCccee
Q 017540 258 FKYIEQLGRYKKLSYRVVFPLELKLSNTAED----ADIEYSLFAVVVHVGSGPNHGHYVSLVKS--HNHWLFFDDENVEM 331 (369)
Q Consensus 258 ~~~~~~~~~~~K~~~~v~~p~~l~l~~~~~~----~~~~Y~L~~vi~H~G~~~~~GHY~~~vr~--~~~W~~~nD~~V~~ 331 (369)
|.++..++...|+...|.||..|||..++.. ....|+|+|||+|.|. .++|||+||+|. +++||+|||+.|++
T Consensus 202 F~~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~-~~~GHY~a~v~~~~~~~W~~fnD~~V~~ 280 (353)
T 1nb8_A 202 FMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGD-NHGGHYVVYLNPKGDGKWCKFDDDVVSR 280 (353)
T ss_dssp CC--------CCCCCCCBCCSEEECGGGBSSCCTTSCCEEEEEEEEEEESS-TTCCCEEEEECTTSSSCCEEEETTEEEE
T ss_pred EEEecccCceEecCcEEECCCeeehhhhhcccCCCCCceEEEEEEEEEeCC-CCCcEEEEEEecCCCCCEEEEECcceEE
Confidence 9998876778899999999999999998864 3689999999999999 799999999995 78999999999999
Q ss_pred eChhhHHhhhcCcccCC---CCCCceEEEEEEEeCC
Q 017540 332 IDESAVQTFFGSAQEYS---SNTDHGYILFYESLGA 364 (369)
Q Consensus 332 v~~~~v~~~~~~~~~~~---~~~~~~y~l~Y~r~~~ 364 (369)
+++++|++...|+.+.. ..+.+||||||+|.+.
T Consensus 281 v~~~~v~~~~~gg~~~~~~~~~~~~aYiLfY~r~~~ 316 (353)
T 1nb8_A 281 CTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESK 316 (353)
T ss_dssp CCHHHHTGGGSCCC-------CCEEEEEEEEEETTT
T ss_pred CCHHHHHHHhcCCCccccccCcCCeEEEEEEEECch
Confidence 99999986544432210 1247899999999875
No 7
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=100.00 E-value=3.3e-60 Score=446.57 Aligned_cols=298 Identities=21% Similarity=0.393 Sum_probs=252.6
Q ss_pred CCCccccccCCchhhhhHHHHHhhCChhHHHHHHhhhccCCCCCc------chhhHHHHHHHHHHHHHhcccCCCccChH
Q 017540 19 GERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGD------AEENLLTCLADLFTQIRAQKKKTGVIAPK 92 (369)
Q Consensus 19 ~~~~~GL~N~gntCy~NsvLQ~L~~~p~f~~~l~~~~~~~~~~~~------~~~~~~~~l~~l~~~l~~~~~~~~~~~~~ 92 (369)
...++||.|+||||||||+||+|+++|+||++++.+......... ...+++++|+.||..|+.+.. ..++|.
T Consensus 21 ~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~--~~v~p~ 98 (415)
T 1vjv_A 21 AQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKSF--KSVLPV 98 (415)
T ss_dssp CCCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC-C--CEECCH
T ss_pred CCCCCCCEeCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCcccccccchhHHHHHHHHHHHHHhcCCC--CccCHH
Confidence 356999999999999999999999999999999986433211111 255899999999999998643 349999
Q ss_pred HHHHHHHhhccccC-------CCCCChHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCcCCCCCCCCCCCCCcCCccc
Q 017540 93 RFVQRLKKQNELFR-------SYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLV 165 (369)
Q Consensus 93 ~~~~~l~~~~~~~~-------~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (369)
.|+..+....+.|. .+.||||+|||.+||+.|++++..
T Consensus 99 ~~~~~l~~~~~~f~~~~~~~~~~~QqDa~Efl~~lLd~L~~~~~~----------------------------------- 143 (415)
T 1vjv_A 99 VLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD----------------------------------- 143 (415)
T ss_dssp HHHHHHHHHCGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTH-----------------------------------
T ss_pred HHHHHHHHhCchhhccccCCCCccccCHHHHHHHHHHHHHHHhcc-----------------------------------
Confidence 99999999888887 899999999999999999998743
Q ss_pred cccccccceeEeeeeeecCCCCcc--ccccceeecCcccccC-ccHHHHHHhcCccceecCCCcccccccCCcceeeEEE
Q 017540 166 TWVHKNFQGILTNETRCLRCETVT--ARDETFFDLSLDIEQN-SSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRM 242 (369)
Q Consensus 166 ~~i~~lF~~~~~~~~~C~~C~~~~--~~~~~~~~l~l~i~~~-~~l~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~ 242 (369)
++|.++|+ .+...++|..|+..+ ...++|+.|+|+++.. .+|+++|+.++..+ +. +.|+.|+....+.++.
T Consensus 144 ~~i~~~F~-~~~~~~~C~~C~~~s~s~~~e~f~~Lsl~i~~~~~~l~~~L~~~~~e~-i~----~~c~~c~~~~~a~k~~ 217 (415)
T 1vjv_A 144 KFSEDFRI-QFKTTIKDTANDNDITVKENESDSKLQCHISGTTNFMRNGLLEGLNEK-IE----KRSDLTGANSIYSVEK 217 (415)
T ss_dssp HHHTTTCE-EEEEEEEETTEEEEEEEECCCEESCEEECCCTTCCBHHHHHHHHHEEC--------------CCCCEEEEE
T ss_pred chHHHHHH-hheEEEEECCCCCCccccccccceeeeeccccccchHHHHHHHHhhhh-hh----hcccccCCcccEEEEE
Confidence 45899999 999999999999986 5899999999999875 58999999988744 33 7899999999999999
Q ss_pred ecccCCceEEEEeeeeeeeccccccccccceeecCcccccCCCCCC----------------------------------
Q 017540 243 KIKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTAED---------------------------------- 288 (369)
Q Consensus 243 ~i~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~p~~l~l~~~~~~---------------------------------- 288 (369)
.|.++|++|+|+|+||.++..++...|+...|.||..|||..|+..
T Consensus 218 ~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~k~~~~~~ 297 (415)
T 1vjv_A 218 KISRLPKFLTVQYVRFFWKRSTNKKSKILRKVVFPFQLDVADMLTPEYAAEKVKVRDELRKVEKEKNEKEREIKRRKFDP 297 (415)
T ss_dssp EEEECBSEEEEEECCEEEETTTTEEEECCCCCBCCSEEECGGGBCHHHHHHHHHHHHHHHHHHHHHHHC-----------
T ss_pred EcccCCCeeEEEEEEEEEeCCCCcchhhcCccCCCcEeEhHHhcChhhhhhhhhhHHHHHHHhhhhhhhhhhhhhccccc
Confidence 9999999999999999999877788999999999999999987631
Q ss_pred --------------------------------------------CCceEEEEEEEEeecCCCCCccEEEEEee---CCcE
Q 017540 289 --------------------------------------------ADIEYSLFAVVVHVGSGPNHGHYVSLVKS---HNHW 321 (369)
Q Consensus 289 --------------------------------------------~~~~Y~L~~vi~H~G~~~~~GHY~~~vr~---~~~W 321 (369)
....|+|+|||+|.|.+.++|||+||+|. +++|
T Consensus 298 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~s~~~GHY~a~vr~~~~~~~W 377 (415)
T 1vjv_A 298 SSSENVMTPREQYETQVALNESEKDQWLEEYKKHFPPNLEKGENPSCVYNLIGVITHQGANSESGHYQAFIRDELDENKW 377 (415)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCTTBCSSSEEEEEEEEEEESSSTTSSEEEEEEECSSCTTCE
T ss_pred cccccccccchhhhhchhhHHhhhhhhhhhcccccccccccccCCCceEEEEEEEEecCCCCCCCCEEEEEeCCCCCCcE
Confidence 24789999999999977999999999998 8999
Q ss_pred EEEeCCcceeeChhhHHhhhcCcccCCCCCCceEEEEEEEeCC
Q 017540 322 LFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYESLGA 364 (369)
Q Consensus 322 ~~~nD~~V~~v~~~~v~~~~~~~~~~~~~~~~~y~l~Y~r~~~ 364 (369)
|+|||+.|+++++++|....+|+ .+.+||||||+|++.
T Consensus 378 ~~fnD~~V~~v~~~~v~~~~~g~-----~~~~aYiLfY~r~~l 415 (415)
T 1vjv_A 378 YKFNDDKVSVVEKEKIESLAGGG-----ESDSALILMYKGFGL 415 (415)
T ss_dssp EEEETTEEEEECHHHHHGGGCCT-----TSCEEEEEEEEETTC
T ss_pred EEeECCcCeEcCHHHHhhhcCCC-----CcceEEEEEEEecCC
Confidence 99999999999999999876553 277899999999863
No 8
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=100.00 E-value=2.1e-58 Score=441.58 Aligned_cols=318 Identities=28% Similarity=0.510 Sum_probs=264.5
Q ss_pred CCCCCCCCccccccCCchhhhhHHHHHhhCChhHHHHHHhhhcc-CCCCCcchhhHHHHHHHHHHHHHhcccC-------
Q 017540 14 DQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSN-NKNLGDAEENLLTCLADLFTQIRAQKKK------- 85 (369)
Q Consensus 14 ~~~~~~~~~~GL~N~gntCy~NsvLQ~L~~~p~f~~~l~~~~~~-~~~~~~~~~~~~~~l~~l~~~l~~~~~~------- 85 (369)
+....+++++||.|+||||||||+||+|+++|+|+++++..... ......+..++.++|..+|..|+.....
T Consensus 133 ~~~~~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~ 212 (476)
T 3mhs_A 133 PSMERRDGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGALNTKQASSSS 212 (476)
T ss_dssp CCGGGTTCCCCCCCSSSTHHHHHHHHHHHTCHHHHHHHHTTHHHHHCSSCCTTTCHHHHHHHHHHHHHSCCCC-------
T ss_pred CCccCCCCCCCCCcCCccHHHHHHHHHHhCCHHHHHHHHhcchhhhccCCCcccchHHHHHHHHHHHhhccccccccccc
Confidence 44445678999999999999999999999999999999864322 1122344667999999999999975432
Q ss_pred CCccChHHHHHHHH---hhccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCcCCCCCCCCCCCCCcCC
Q 017540 86 TGVIAPKRFVQRLK---KQNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKE 162 (369)
Q Consensus 86 ~~~~~~~~~~~~l~---~~~~~~~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (369)
...+.+..+...+. +..+.|..+.||||+|||.+||+.|++++......... .......
T Consensus 213 ~~~~~~~~~~~~l~~~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~~~~~~~~~~~------------------~~~~~~~ 274 (476)
T 3mhs_A 213 TSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNAKE------------------VSRANNK 274 (476)
T ss_dssp -CCCSCHHHHHHHHHHHHHCGGGSSSSCEEHHHHHHHHHHHHHHHHHHHCCC-------------------------CCC
T ss_pred ccccCcchHHHHHHHHHHhccccCCCCCcCHHHHHHHHHHHHHHHHhhccccccc------------------ccccccc
Confidence 11355666555554 77889999999999999999999999988654221100 0011122
Q ss_pred ccccccccccceeEeeeeeecCCCCccc-cccceeecCcccccCccHHHHHHhcCccceecCCCcccccccCCcceeeEE
Q 017540 163 PLVTWVHKNFQGILTNETRCLRCETVTA-RDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKR 241 (369)
Q Consensus 163 ~~~~~i~~lF~~~~~~~~~C~~C~~~~~-~~~~~~~l~l~i~~~~~l~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~ 241 (369)
...++|.++|.|.+.+.++|..|+.++. ..++|+.|+|+++...+|+++|+.++.+|.+++.+ +.|++|+....+.++
T Consensus 275 ~~~s~i~~~F~G~l~~~~~C~~C~~~s~~~~e~f~~LsL~i~~~~sl~~~L~~~~~~E~l~~~~-~~C~~C~~~~~a~k~ 353 (476)
T 3mhs_A 275 QCECIVHTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKDKKKLYECLDSFHKKEQLKDFN-YHCGECNSTQDAIKQ 353 (476)
T ss_dssp SCCSHHHHHSCEEEEEEEECTTTCCCCEEEEEEESCEEECCTTCCBHHHHHHHHHCCEECSSCC-CEETTTTEECCCEEE
T ss_pred cCCCcceeecceEEEEEEEECCCCCeeCCcccchhhhccchhhhhHHHHHHHHhcChhhccCCC-CcCCccCCcccEEEE
Confidence 3567899999999999999999999864 58999999999999999999999999999998654 999999999999999
Q ss_pred EecccCCceEEEEeeeeeeeccccccccccceeecCcccccCCCCCC------------CCceEEEEEEEEeecCCCCCc
Q 017540 242 MKIKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTAED------------ADIEYSLFAVVVHVGSGPNHG 309 (369)
Q Consensus 242 ~~i~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~p~~l~l~~~~~~------------~~~~Y~L~~vi~H~G~~~~~G 309 (369)
..|.++|++|+|+|+||.++.. +...|+...|.||..|||..++.. ....|+|+|||+|.|+ .++|
T Consensus 354 ~~i~~lP~vL~i~LkRF~~~~~-~~~~K~~~~V~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avv~H~G~-~~~G 431 (476)
T 3mhs_A 354 LGIHKLPSVLVLQLKRFEHLLN-GSNRKLDDFIEFPTYLNMKNYCSTKEKDKHSENGKVPDIIYELIGIVSHKGT-VNEG 431 (476)
T ss_dssp EEEEEBCSEEEEEECCEEECTT-SCEEECCCCCBCCSEEECGGGBSCCBCCC--CCCBCCCEEEEEEEEEEEEEC-SSSE
T ss_pred EEcccCCcceEEEeeeccccCC-CCeEECCEEEcCCCeeechhhcCcccccccccccCCCCCcEEEEEEEEeCCC-CCCC
Confidence 9999999999999999998754 568899999999999999998753 3567999999999997 8999
Q ss_pred cEEEEEee-CCcEEEEeCCcceeeChhhHHhhhcCcccCCCCCCceEEEEEEEeCC
Q 017540 310 HYVSLVKS-HNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYESLGA 364 (369)
Q Consensus 310 HY~~~vr~-~~~W~~~nD~~V~~v~~~~v~~~~~~~~~~~~~~~~~y~l~Y~r~~~ 364 (369)
||++|+|. +++||+|||+.|+++++++|. ..+||||||+|++.
T Consensus 432 HY~a~vr~~~~~W~~fnD~~V~~v~~~~v~------------~~~aYiLfY~r~~~ 475 (476)
T 3mhs_A 432 HYIAFCKISGGQWFKFNDSMVSSISQEEVL------------KEQAYLLFYTIRQV 475 (476)
T ss_dssp EEEEEEECTTSCEEEEETTEEEEECHHHHT------------TSCEEEEEEEEEEE
T ss_pred ceEEEEECCCCcEEEEeCCceEECCHHHhc------------cCCcEEEEEEEecC
Confidence 99999998 789999999999999999998 68999999999863
No 9
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=100.00 E-value=1.1e-57 Score=440.25 Aligned_cols=305 Identities=25% Similarity=0.441 Sum_probs=259.4
Q ss_pred CCCccccccCCchhhhhHHHHHhhCChhHHHHHHhhhccCCCCCcchhhHHHHHHHHHHHHHhcccCCCccChHHHHHHH
Q 017540 19 GERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRL 98 (369)
Q Consensus 19 ~~~~~GL~N~gntCy~NsvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~l 98 (369)
.++++||.|+||||||||+||+|+++|+||++++..... ......++..+|+.||..|+.+.. ++.|..|+..+
T Consensus 172 ~~g~~GL~NlGnTCYmNSvLQ~L~~~~~fr~~~~~~~~~---~~~~~~~~~~~l~~lf~~l~~~~~---~~~~~~l~~~~ 245 (522)
T 2f1z_A 172 HTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTE---GDDSSKSVPLALQRVFYELQHSDK---PVGTKKLTKSF 245 (522)
T ss_dssp TTSCCCBCCC--CTTHHHHHHHHHTCHHHHHHHHTCCCC---SSCTTTCHHHHHHHHHHHHHHCSS---CBCCTTHHHHT
T ss_pred cCCccceecCcccHHHHHHHHHHhccHHHHHHHhhcccc---CCcccchHHHHHHHHHHHHhcCCC---ccCcHHHHhhc
Confidence 467999999999999999999999999999999865322 123345788999999999998643 37788877766
Q ss_pred HhhccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCcCCCCCCCCCCCCCcCCccccccccccceeEee
Q 017540 99 KKQNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTN 178 (369)
Q Consensus 99 ~~~~~~~~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lF~~~~~~ 178 (369)
+ ...|..+.||||+||+.+||+.|++++... ...++|.++|+|.+.+
T Consensus 246 ~--~~~~~~~~QqDa~Efl~~LLd~L~~~l~~~-------------------------------~~~s~i~~lF~G~~~s 292 (522)
T 2f1z_A 246 G--WETLDSFMQHDVQELCRVLLDNVENKMKGT-------------------------------CVEGTIPKLFRGKMVS 292 (522)
T ss_dssp C--CCTTTSSTTSCHHHHHHHHHHHHHHHHTTS-------------------------------TTTTHHHHHHCEEEEE
T ss_pred C--CccCCCcccccHHHHHHHHHHHHHhhccCC-------------------------------ccccchhhheeEEEEE
Confidence 4 356889999999999999999999876321 1235799999999999
Q ss_pred eeeecCCCCccccccceeecCcccccCccHHHHHHhcCccceecCCCcccccccCCcceeeEEEecccCCceEEEEeeee
Q 017540 179 ETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRF 258 (369)
Q Consensus 179 ~~~C~~C~~~~~~~~~~~~l~l~i~~~~~l~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~~L~i~l~R~ 258 (369)
.++|..|+..+...++|+.|+|+++...++.++|+.++.+|.+++++.+.|+.|+. ..+.++..|.++|++|+|+|+||
T Consensus 293 ~i~C~~C~~~s~~~e~f~~LsL~i~~~~~l~~~L~~~~~~E~l~~~n~~~C~~c~~-~~a~k~~~i~~lP~vL~i~LkRF 371 (522)
T 2f1z_A 293 YIQCKEVDYRSDRREDYYDIQLSIKGKKNIFESFVDYVAVEQLDGDNKYDAGEHGL-QEAEKGVKFLTLPPVLHLQLMRF 371 (522)
T ss_dssp EECCSSSCCCCCEEEEESCEEECCTTCCBHHHHHHHHTCEEEECTTSCBCCGGGCS-BCEEEEEEESCCCSEEEEEECCE
T ss_pred EEEcCCCCceeeeeeeeEEEEEEeCCcccchHHHHHhhceeecCCcceeecCcCCc-cceEEEEEeecCCceEEEEEEeE
Confidence 99999999999999999999999999999999999999999999999999999974 67889999999999999999999
Q ss_pred eeeccccccccccceeecCcccccCCCCCC----CCceEEEEEEEEeecCCCCCccEEEEEee--CCcEEEEeCCcceee
Q 017540 259 KYIEQLGRYKKLSYRVVFPLELKLSNTAED----ADIEYSLFAVVVHVGSGPNHGHYVSLVKS--HNHWLFFDDENVEMI 332 (369)
Q Consensus 259 ~~~~~~~~~~K~~~~v~~p~~l~l~~~~~~----~~~~Y~L~~vi~H~G~~~~~GHY~~~vr~--~~~W~~~nD~~V~~v 332 (369)
.++..++...|+...|.||..|||..++.. ....|+|+|||+|.|. .++|||+||+|. +++||+|||+.|+++
T Consensus 372 ~~~~~~~~~~Ki~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~-~~~GHY~a~v~~~~~~~W~~fnD~~V~~v 450 (522)
T 2f1z_A 372 MYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGD-NHGGHYVVYLNPKGDGKWCKFDDDVVSRC 450 (522)
T ss_dssp EECSSSSCEEECCCCCBCCSEEECGGGBSSCCTTSCCEEEEEEEEEEECS-SSCSEEEEEECTTSSSCCEEEETTEEEEC
T ss_pred EEcccCCcceEcCcEEeCCCeecchhhhccccCCCCcEEEEEEEEEeccc-CCCceEEEEEecCCCCCEEEEECceeEEC
Confidence 998877778999999999999999998864 3689999999999999 799999999995 789999999999999
Q ss_pred ChhhHHhhhcCcccCC---CCCCceEEEEEEEeCC
Q 017540 333 DESAVQTFFGSAQEYS---SNTDHGYILFYESLGA 364 (369)
Q Consensus 333 ~~~~v~~~~~~~~~~~---~~~~~~y~l~Y~r~~~ 364 (369)
++++|++...|+.+.. ..+.+||||||+|.+.
T Consensus 451 ~~~~v~~~~~Gg~~~~~~~~~~~~aYiLfY~r~~~ 485 (522)
T 2f1z_A 451 TKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESK 485 (522)
T ss_dssp CHHHHSTTSSCCC--------CEEEEEEEEEETTS
T ss_pred CHHHHHHhhcCCCccccccCcCCceEEEEEEECCc
Confidence 9999986443332110 0146899999999875
No 10
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=100.00 E-value=5.7e-56 Score=445.15 Aligned_cols=230 Identities=25% Similarity=0.394 Sum_probs=200.5
Q ss_pred CCCccccccCCchhhhhHHHHHhhCChhHHHHHHhhhccC--CCCCcchhhHHHHHHHHHHHHHhcc-------------
Q 017540 19 GERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNN--KNLGDAEENLLTCLADLFTQIRAQK------------- 83 (369)
Q Consensus 19 ~~~~~GL~N~gntCy~NsvLQ~L~~~p~f~~~l~~~~~~~--~~~~~~~~~~~~~l~~l~~~l~~~~------------- 83 (369)
+++++||.|+||||||||+||+|+++|+||++++...... ........++.++|+.||..|+.+.
T Consensus 341 ~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~l~~~l~~L~~~L~s~~~s~~~~~~~~~~~ 420 (854)
T 3ihp_A 341 GPGYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPESGDGER 420 (854)
T ss_dssp STTCCCBCCCSSCHHHHHHHHHHTTSHHHHHHHTTTHHHHHHHCCSCGGGCHHHHHHHHHHHHHSCC-------------
T ss_pred CCCccceEecCCceehhHHHHHHhCcHHHHHHHHhhhhhhhccccCCccccHHHHHHHHHHHHhcccccccccccccccc
Confidence 4569999999999999999999999999999997432110 1233456689999999999998754
Q ss_pred -----cCCCccChHHHHHHHHhhccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCcCCCCCCCCCCCC
Q 017540 84 -----KKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANG 158 (369)
Q Consensus 84 -----~~~~~~~~~~~~~~l~~~~~~~~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (369)
.....+.|..|+..++...+.|..+.||||+|||.+||+.|++++..
T Consensus 421 ~~~~~~~~~~isP~~f~~~l~~~~~~F~~~~QQDA~EFl~~LLd~L~~el~~---------------------------- 472 (854)
T 3ihp_A 421 VPEQKEVQDGIAPRMFKALIGKGHPEFSTNRQQDAQEFFLHLINMVERNCRS---------------------------- 472 (854)
T ss_dssp --------CCBCCHHHHHHHTTTCTTTTSSSCCBHHHHHHHHHHHHHHTCTT----------------------------
T ss_pred ccccccCCCccChHHHHHHHhhhccccccccccCHHHHHHHHHHHHHHHhcc----------------------------
Confidence 23346999999999999999999999999999999999999986521
Q ss_pred CcCCccccccccccceeEeeeeeecCCCCccccccceeecCcccccC--------------------------------c
Q 017540 159 VRKEPLVTWVHKNFQGILTNETRCLRCETVTARDETFFDLSLDIEQN--------------------------------S 206 (369)
Q Consensus 159 ~~~~~~~~~i~~lF~~~~~~~~~C~~C~~~~~~~~~~~~l~l~i~~~--------------------------------~ 206 (369)
.+.|.++|.|.+...++|..|++++...++|+.|+|++|.. .
T Consensus 473 ------~s~i~~lF~G~l~s~i~C~~C~~vs~t~e~F~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 546 (854)
T 3ihp_A 473 ------SENPNEVFRFLVEEKIKCLATEKVKYTQRVDYIMQLPVPMDAALNKEELLEYEEKKRQAEEEKMALPELVRAQV 546 (854)
T ss_dssp ------SCCGGGGTCEEEEEEEEETTTTEEEEEEEEESEEEECCCGGGCTTHHHHHHHHHHHHHHHHTTCCCCCCCCEEC
T ss_pred ------cCCchhhcCceEEEEEEecCCCCEeEEeeeceEEEeeCCccccccccchhhhcccccccccccccccccccCCC
Confidence 24589999999999999999999999999999999999853 4
Q ss_pred cHHHHHHhcCccceecCCCcccccccCCcceeeEEEecccCCceEEEEeeeeeeeccccccccccceeecCcccccCCCC
Q 017540 207 SITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTA 286 (369)
Q Consensus 207 ~l~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~p~~l~l~~~~ 286 (369)
+|+++|+.|+.+|.+++ +.|++|+.+..+.++..|.++|++|+|+|+||.++.. +...|+...|.||..|||..|+
T Consensus 547 sL~dcL~~f~~~E~Le~---y~C~~C~~k~~a~K~~~i~~lP~vLiihLkRF~~d~~-~~~~Ki~~~V~FP~~LDl~~y~ 622 (854)
T 3ihp_A 547 PFSSCLEAYGAPEQVDD---FWSTALQAKSVAVKTTRFASFPDYLVIQIKKFTFGLD-WVPKKLDVSIEMPEELDISQLR 622 (854)
T ss_dssp CHHHHHHHHHSCEEEEE---EEETTTTEEEEEEEEEEESSCCSEEEEEECCEEECGG-GCEEECCEECCCCSEEECGGGB
T ss_pred CHHHHHHHhcCceEeee---eeccccCCcceeeEEEEeeeCCceEEEEeehheecCC-CceEECCeEEecCCcEehHHhc
Confidence 89999999999999985 9999999999999999999999999999999999766 6788999999999999998774
No 11
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=99.97 E-value=2.1e-31 Score=235.64 Aligned_cols=220 Identities=23% Similarity=0.349 Sum_probs=149.6
Q ss_pred CccccccCCchhhhhHHHHHhhCChhHHHHHHhhhccCCCCCcchhhHHHHH-HHHHHHHHhcccCCCccChHHHHHHHH
Q 017540 21 RYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCL-ADLFTQIRAQKKKTGVIAPKRFVQRLK 99 (369)
Q Consensus 21 ~~~GL~N~gntCy~NsvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l-~~l~~~l~~~~~~~~~~~~~~~~~~l~ 99 (369)
.++||+|+||||||||+||+|+++|++++.|+.+...... ......+..+| +.||..|.. . .+.|..++..|+
T Consensus 8 ~p~GLqNlgNTCYLNSTLq~Lfsipel~d~Ll~~~~~~~~-~~~~~~l~~~L~r~i~~~Lrk-~----~~~P~~~l~~LR 81 (374)
T 2vhf_A 8 KKKGIQGHYNSCYLDSTLFCLFAFSSVLDTVLLRPKEKND-VEYYSETQELLRTEIVNPLRI-Y----GYVCATKIMKLR 81 (374)
T ss_dssp ESCEECCCSSCHHHHHHHHHHHSSBGGGHHHHHCCCCTTS-CTTHHHHHHHHHHTTHHHHHH-T----SEECHHHHHHHH
T ss_pred CCccccCCCcCcHHHHHHHHHHhchHHHHHHHhCCCCCCc-chhHHHHHHHHHHHHHHHHhh-c----CCCcHHHHHHHH
Confidence 4889999999999999999999999999999987444322 22334688889 899999997 2 277888888887
Q ss_pred hhccccC-----CCCCChHHHHHHHHHHHHHHH-HHHHHhhCCCCCCCCCCCcCCCCCCCCCCCCCcCCccccccccccc
Q 017540 100 KQNELFR-----SYMHQDAHEFLNFLLNELVDI-LEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQ 173 (369)
Q Consensus 100 ~~~~~~~-----~~~qqDa~Efl~~ll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lF~ 173 (369)
+..+.|. ...||||.||++.||..|... +. .....+..+ ...+.+.++|.
T Consensus 82 ~~~pQfae~~G~~~~QQDaEE~~t~Ll~~L~~~ep~-----------------------lkl~s~~~~-~~~~~~~q~f~ 137 (374)
T 2vhf_A 82 KILEKVEAASGFTSEEKDPEEFLNILFHHILRVEPL-----------------------LKIRSAGQK-VQDCYFYQIFM 137 (374)
T ss_dssp HHHHHHC--------CCCHHHHHHHHHTTTTCCCCS-----------------------EEEEETTCC-CEEESCEECCC
T ss_pred HHhHHHhcccCCCccccCHHHHHHHHHHHHhhcccc-----------------------ccccccccc-ccccHHHHHhc
Confidence 7666554 478999999999999888421 00 000000000 01133444443
Q ss_pred eeEeeeeeecCCCCccccccceeecCcccccCccHHHHHHhcCccceecCCCcccccccCCcceeeEEEecccCCceEEE
Q 017540 174 GILTNETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKSPHTLVI 253 (369)
Q Consensus 174 ~~~~~~~~C~~C~~~~~~~~~~~~l~l~i~~~~~l~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~~L~i 253 (369)
...+ . +...++..+++..+-.+ ...|.++|++|+|
T Consensus 138 ----------------E~~e---~-----~~~e~~~qL~e~nfl~~---------------------gikisrLP~yLtV 172 (374)
T 2vhf_A 138 ----------------EKNE---K-----VGVPTIQQLLEWSFINS---------------------NLKFAEAPSCLII 172 (374)
T ss_dssp ----------------CCC----------CCCCBHHHHHHHHHHHH---------------------TEEESSCCSEEEE
T ss_pred ----------------Cccc---c-----cCCcHHHHhhhHHHHHc---------------------CCeeecCCcceEE
Confidence 0000 0 00234445543322111 1238999999999
Q ss_pred EeeeeeeeccccccccccceeecCcccccCCCCC----------------------------------------------
Q 017540 254 HLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTAE---------------------------------------------- 287 (369)
Q Consensus 254 ~l~R~~~~~~~~~~~K~~~~v~~p~~l~l~~~~~---------------------------------------------- 287 (369)
|+.|| +...|+.++|.||.+||+.++++
T Consensus 173 q~vRF------gKkaKIlrkV~fp~eLDvtdl~tdelr~~~vr~kl~e~e~~~~~k~~k~~~~~~~~~~~~~~~~~~~~~ 246 (374)
T 2vhf_A 173 QMPRF------GKDFKLFKKIFPSLELNITDLLEDTPRQCRICGGLAMYECRECYDDPDISAGKIKQFCKTCNTQVHLHP 246 (374)
T ss_dssp ECCCC------SSSSSCCCCCBCCSEECCGGGBSSSCCBCTTTSCBCCEECGGGTTCTTTTTTSCCEECHHHHHHHTTSG
T ss_pred eeecc------CccccccCCCCCcchhccHhhcCcchhhccHhHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhh
Confidence 99999 35679999999999998865432
Q ss_pred -------------------------CCCceEEEEEEEEeecCCCCCccEEEEEee---CCcEEEEeC
Q 017540 288 -------------------------DADIEYSLFAVVVHVGSGPNHGHYVSLVKS---HNHWLFFDD 326 (369)
Q Consensus 288 -------------------------~~~~~Y~L~~vi~H~G~~~~~GHY~~~vr~---~~~W~~~nD 326 (369)
.+...|+|+|||+ .++|||+||||. +++|+.||-
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~g~~psg~yeL~aVlt-----adsgHYvafVK~~~~d~~W~~FDs 308 (374)
T 2vhf_A 247 KRLNHKYNPVSLPKDLPDWDWRHGCIPCQNMELFAVLC-----IETSHYVAFVKYGKDDSAWLFFDS 308 (374)
T ss_dssp GGTTCCCEECCC----------------CCEEEEEEEE-----EETTEEEEEEECSSSTTCEEEEET
T ss_pred hhhcccccccccCccccccccccCCCCceeEEEEEEEE-----ccCCceEEEEEecCCCCCeEEEec
Confidence 0126799999999 677999999997 789999983
No 12
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=97.58 E-value=0.001 Score=54.32 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=27.5
Q ss_pred EEEEEeecCCCCCccEEEEEeeCCcEEEEeCCcceeeC
Q 017540 296 FAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMID 333 (369)
Q Consensus 296 ~~vi~H~G~~~~~GHY~~~vr~~~~W~~~nD~~V~~v~ 333 (369)
.+.++..|+ .++|||..+....+ +.+|-..+.+++
T Consensus 161 ~~~~vF~G~-~~~GHY~~~~~~~~--~~vDG~~~~~~~ 195 (211)
T 3mp2_A 161 VMHAVYTGT-TQNGHYMVDDIEHG--YCVDGMGIKPLK 195 (211)
T ss_dssp SEEEEEESC-TTTCEEEEEETTTT--EEEETTEEECCC
T ss_pred eeEEEEEcC-CCCceEEEEecccc--eEEeCCceeEcc
Confidence 566778998 89999999965544 788877777776
No 13
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A*
Probab=96.91 E-value=0.029 Score=48.89 Aligned_cols=37 Identities=16% Similarity=0.294 Sum_probs=27.6
Q ss_pred EEEEEeecCCCCCccEEEEEeeCCcEEEEeCCcceeeCh
Q 017540 296 FAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDE 334 (369)
Q Consensus 296 ~~vi~H~G~~~~~GHY~~~vr~~~~W~~~nD~~V~~v~~ 334 (369)
++..+..|. .++|||..+...... +++|-..+.+++.
T Consensus 260 ~~a~vF~G~-~~~GHYt~~~~~~~~-~~~Dg~~~~~~~~ 296 (315)
T 2fe8_A 260 LCANEYTGN-YQCGHYTHITAKETL-YRIDGAHLTKMSE 296 (315)
T ss_dssp SEEEEEESC-GGGCEEEEEEESSSE-EEEETTEEEEESE
T ss_pred EEEEEEECC-CCccceEEEecCCce-eEEeCCcceeccc
Confidence 455556898 689999988765444 7899888887764
No 14
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=94.19 E-value=0.021 Score=42.72 Aligned_cols=37 Identities=24% Similarity=0.300 Sum_probs=31.5
Q ss_pred EEEEEEEeecCCCCCccEEEEEeeCCcEEEEeCCcceeeCh
Q 017540 294 SLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDE 334 (369)
Q Consensus 294 ~L~~vi~H~G~~~~~GHY~~~vr~~~~W~~~nD~~V~~v~~ 334 (369)
+.+|-|.-.|. +|-+-++..+..||.+||+...+.++
T Consensus 108 DfhAgIflkg~----eHAVFa~~TS~GWyaiDDe~fypwtP 144 (167)
T 1qmy_A 108 DFHAGIFLKGQ----EHAVFACVTSNGWYAIDDEDFYPWTP 144 (167)
T ss_dssp GEEEEEEEETT----TEEEEEECCTTSSEEEETTEEEECCC
T ss_pred hhhhheeecCC----CceEEEEEccCceEEecccccccCCC
Confidence 45677777777 79999999999999999999988864
No 15
>2ww6_A Fibritin, T4 fibritin; D-amino acids, chaperone, viral protein; HET: DPN PG4; 0.98A {Enterobacteria phage T4} PDB: 1rfo_A 1u0p_A 2kbl_A 2ww7_A*
Probab=69.36 E-value=2.6 Score=21.45 Aligned_cols=15 Identities=13% Similarity=0.600 Sum_probs=12.5
Q ss_pred EEEEeeCCcEEEEeC
Q 017540 312 VSLVKSHNHWLFFDD 326 (369)
Q Consensus 312 ~~~vr~~~~W~~~nD 326 (369)
.+|||+++.|....+
T Consensus 11 ~~Yvr~dg~WV~l~t 25 (27)
T 2ww6_A 11 QAYVRKFGEWVLLST 25 (27)
T ss_dssp CEEEEETTEEEEGGG
T ss_pred ceeEEEcCeEEEccc
Confidence 478999999998765
No 16
>3o65_A Putative ataxin-3-like protein; papain-like fold, hydrolase-protein complex; 2.70A {Homo sapiens} PDB: 2aga_A 1yzb_A 2jri_A 2dos_A
Probab=57.07 E-value=10 Score=30.37 Aligned_cols=59 Identities=14% Similarity=0.301 Sum_probs=40.4
Q ss_pred EEEEEEeecCCCCCccEEEEEeeCCcEEEEeCCccee--eChhhHHhhhcCcccCCCCCCceEEEEEEEeCC
Q 017540 295 LFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEM--IDESAVQTFFGSAQEYSSNTDHGYILFYESLGA 364 (369)
Q Consensus 295 L~~vi~H~G~~~~~GHY~~~vr~~~~W~~~nD~~V~~--v~~~~v~~~~~~~~~~~~~~~~~y~l~Y~r~~~ 364 (369)
..|+|++... ||+|..|-++.||-+|=..-.+ ++...+..++..- ....|-+|-.+-+.
T Consensus 110 ~~~FI~N~~~-----HWfaiRkigg~WyNLdS~l~~P~~i~~~yL~~fL~ql------~~eg~siFvV~g~l 170 (191)
T 3o65_A 110 ERSFICNYKQ-----HWFTIRKFGKHWFNLNSLLAGPELISDTCLANFLARL------QQQAYSVFVVKGDL 170 (191)
T ss_dssp CCEEEEEESS-----CEEEEEEETTEEEECCTTSSSCEEECHHHHHHHHGGG------GSTTEEEEEEESCC
T ss_pred hhhhhhcccc-----ceeeEEecCCEEEEccCCCCCCCCcChHHHHHHHHHH------HHCCCEEEEEcCCC
Confidence 4688998764 9999998899999999655443 3555555444321 35677777776543
No 17
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=56.07 E-value=16 Score=27.40 Aligned_cols=33 Identities=18% Similarity=0.439 Sum_probs=24.8
Q ss_pred CccccccCCchhhhhHHHHHhhCCh-hHHHHHHh
Q 017540 21 RYFGLENFGNTCYCNSVLQALYFCV-PFREQLLD 53 (369)
Q Consensus 21 ~~~GL~N~gntCy~NsvLQ~L~~~p-~f~~~l~~ 53 (369)
.+.|+.|..++||+|++||+..... +|.++...
T Consensus 12 ~fys~pN~hdncWLNtilQLfryvdepfFd~~y~ 45 (167)
T 1qmy_A 12 TFYSRPNNHDNAWLNAILQLFRYVEEPFFDWVYS 45 (167)
T ss_dssp ECCCCCCSSSCHHHHHHHHHHHHHTCCTTHHHHT
T ss_pred ccccCCCCCcchHHHHHHHHHHHcCccchhhccC
Confidence 3789999999999999999976432 34444444
No 18
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=49.00 E-value=41 Score=25.28 Aligned_cols=19 Identities=16% Similarity=0.158 Sum_probs=13.8
Q ss_pred eEeeeeeecCCCCcccccc
Q 017540 175 ILTNETRCLRCETVTARDE 193 (369)
Q Consensus 175 ~~~~~~~C~~C~~~~~~~~ 193 (369)
......+|.+|++.....+
T Consensus 66 ~~p~~~~C~~CG~~~~~~~ 84 (139)
T 3a43_A 66 EEEAVFKCRNCNYEWKLKE 84 (139)
T ss_dssp EECCEEEETTTCCEEEGGG
T ss_pred ecCCcEECCCCCCEEeccc
Confidence 4455789999998765544
No 19
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=44.22 E-value=18 Score=26.22 Aligned_cols=16 Identities=13% Similarity=0.304 Sum_probs=11.1
Q ss_pred eeeeecCCCCcccccc
Q 017540 178 NETRCLRCETVTARDE 193 (369)
Q Consensus 178 ~~~~C~~C~~~~~~~~ 193 (369)
....|..|+......+
T Consensus 25 ~~~~C~~C~y~~~~~~ 40 (113)
T 3h0g_I 25 LRLACRNCDYSEIAAT 40 (113)
T ss_dssp CCEECSSSCCEECCSC
T ss_pred eEEECCCCCCeEEcCC
Confidence 3578999998654443
No 20
>3b79_A Toxin secretion ATP-binding protein; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.37A {Vibrio parahaemolyticus rimd 2210633}
Probab=43.70 E-value=52 Score=23.77 Aligned_cols=42 Identities=10% Similarity=-0.098 Sum_probs=26.2
Q ss_pred ccEEEEEeeCCc--EEEEeC----CcceeeChhhHHhhhcCcccCCCCCCceEEEEEEE
Q 017540 309 GHYVSLVKSHNH--WLFFDD----ENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYES 361 (369)
Q Consensus 309 GHY~~~vr~~~~--W~~~nD----~~V~~v~~~~v~~~~~~~~~~~~~~~~~y~l~Y~r 361 (369)
|||+...+.++. .+...| .....++.++..+. .++++++-++
T Consensus 79 ~h~vVl~~~~~~~~~~~i~dp~~~~g~~~~~~~ef~~~-----------w~G~~l~~~~ 126 (129)
T 3b79_A 79 GDSCVLNSINMETREAEVTTLESGMVPISIPLEDLLEQ-----------YTGRYFLVKK 126 (129)
T ss_dssp GEEEEEEEEETTTTEEEEECTTTTTSCEEEEHHHHHHH-----------EEEEEEEEEE
T ss_pred CCEEEEEEEcCCCceEEEEccCCCCCcEEeeHHHHHhh-----------CCEEEEEEec
Confidence 799988766333 444444 34567788887763 3566666554
No 21
>1xv3_A Penaeidin-4D, PEN-4D; antimicrobial peptide, antifungal peptide, cysteine-rich, disulfide bond, oxidative folding, proline- rich, shrimp, antibiotic; NMR {Synthetic}
Probab=32.78 E-value=27 Score=20.42 Aligned_cols=28 Identities=14% Similarity=0.157 Sum_probs=22.0
Q ss_pred CCCCCCccccccC-CchhhhhHHHHHhhC
Q 017540 16 FPEGERYFGLENF-GNTCYCNSVLQALYF 43 (369)
Q Consensus 16 ~~~~~~~~GL~N~-gntCy~NsvLQ~L~~ 43 (369)
++..+.|++..|+ .|.||.-+..|++.-
T Consensus 9 ~~RPpRPv~~rp~gC~sC~~is~s~Ar~C 37 (47)
T 1xv3_A 9 LRKPSRPIFIRPIGCDVCYGIPSSTARLC 37 (47)
T ss_dssp CCCCCCCCCCCCSSTTCTTTSCHHHHHHH
T ss_pred CCCCCCCcccCCcCCccccccCHHHHHHH
Confidence 4455578888998 599999999998753
No 22
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Probab=31.41 E-value=1.1e+02 Score=20.35 Aligned_cols=51 Identities=22% Similarity=0.275 Sum_probs=34.9
Q ss_pred CCccEEEEEee-----------CCcEEEEeCCcceeeChhhHHhhhcCcccCCCCCCceEEEEEEEeC
Q 017540 307 NHGHYVSLVKS-----------HNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYESLG 363 (369)
Q Consensus 307 ~~GHY~~~vr~-----------~~~W~~~nD~~V~~v~~~~v~~~~~~~~~~~~~~~~~y~l~Y~r~~ 363 (369)
..|.++..+.. ++....+|+..|...+..++.+.+... .....+++++|.+
T Consensus 26 ~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~------~~~~~~~~~~r~~ 87 (91)
T 1g9o_A 26 KLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAA------LNAVRLLVVDPET 87 (91)
T ss_dssp CSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTC------SSEEEEEEECCCC
T ss_pred CCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC------CCcEEEEEEcCCc
Confidence 45777777753 578999999999888888887766542 3445555555543
No 23
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=27.43 E-value=1.2e+02 Score=24.41 Aligned_cols=22 Identities=9% Similarity=-0.050 Sum_probs=13.7
Q ss_pred cccccceeEeeeeeecCCCCcc
Q 017540 168 VHKNFQGILTNETRCLRCETVT 189 (369)
Q Consensus 168 i~~lF~~~~~~~~~C~~C~~~~ 189 (369)
+..+-.+.....-+|..||.+.
T Consensus 160 l~~l~~~~~~~~~~C~~CG~i~ 181 (202)
T 1yuz_A 160 YNDIDAPDDDKFHLCPICGYIH 181 (202)
T ss_dssp HHTTTCCCSCCEEECSSSCCEE
T ss_pred HHHHhcCCCCcEEEECCCCCEE
Confidence 3333344344567899999874
No 24
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=26.08 E-value=25 Score=23.58 Aligned_cols=30 Identities=23% Similarity=0.533 Sum_probs=19.6
Q ss_pred cccccccCCcceeeEEEecccCCceEEEEee
Q 017540 226 KFFCDKCCSLQEAQKRMKIKKSPHTLVIHLK 256 (369)
Q Consensus 226 ~~~C~~C~~~~~~~~~~~i~~~P~~L~i~l~ 256 (369)
..+|++|+..........+.+- --+.++++
T Consensus 30 k~FCp~CGn~TL~Rvsvsvd~~-G~~~~hl~ 59 (79)
T 2con_A 30 RVFCGHCGNKTLKKVSVTINDD-GTLHMHFS 59 (79)
T ss_dssp CCSCSSSCCSCCEEEECBCCSS-CCCBCCCC
T ss_pred cccccccCcccceEEEEEECCC-CcEEEecc
Confidence 5789999997665555555443 44555665
No 25
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=22.96 E-value=1.6e+02 Score=20.15 Aligned_cols=46 Identities=7% Similarity=0.094 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHHhcccCCCccChHHHHHHHHhhccccCCCCCChHHHHH
Q 017540 67 NLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFL 117 (369)
Q Consensus 67 ~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~qqDa~Efl 117 (369)
.-...|+..|..++...... ++..+|...+...+..+ ...++.+++
T Consensus 33 ~~~~el~~~F~~~D~d~~G~--I~~~El~~~l~~lg~~~---~~~ei~~l~ 78 (100)
T 2lv7_A 33 DELEEIREAFKVFDRDGNGF--ISKQELGTAMRSLGYMP---NEVELEVII 78 (100)
T ss_dssp GGHHHHHHHHHHTCSSCSSC--BCHHHHHHHHHHHTCCC---CTTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCc--CCHHHHHHHHHHhCCCC---CHHHHHHHH
Confidence 34567899999988765554 99999999998765433 234444443
No 26
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=22.73 E-value=37 Score=25.35 Aligned_cols=15 Identities=20% Similarity=0.386 Sum_probs=10.2
Q ss_pred eeeecCCCCcccccc
Q 017540 179 ETRCLRCETVTARDE 193 (369)
Q Consensus 179 ~~~C~~C~~~~~~~~ 193 (369)
...|.+|+.......
T Consensus 46 ~~~CrtCgY~~~~~~ 60 (133)
T 3qt1_I 46 LFECRTCSYVEEAGS 60 (133)
T ss_dssp CCBCSSSCCBCCCSC
T ss_pred EEECCCCCCcEEcCC
Confidence 578889988654433
No 27
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.14 E-value=1.6e+02 Score=19.86 Aligned_cols=45 Identities=7% Similarity=0.064 Sum_probs=31.9
Q ss_pred EeeCCcEEEEeCCcceeeChhhHHhhhcCcccCCCCCCceEEEEEEEeCCCC
Q 017540 315 VKSHNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYESLGAGS 366 (369)
Q Consensus 315 vr~~~~W~~~nD~~V~~v~~~~v~~~~~~~~~~~~~~~~~y~l~Y~r~~~~~ 366 (369)
++.++..+.+|+..|...+..++...... ......|.+.|.+..+
T Consensus 48 L~~GD~Il~ing~~v~~~~~~~~~~~~~~-------~g~~v~l~v~R~~~~~ 92 (96)
T 2edv_A 48 LFPGDQILQMNNEPAEDLSWERAVDILRE-------AEDSLSITVVRCTSSG 92 (96)
T ss_dssp SCTTCBEEEESSCBSTTCCHHHHHHHHHH-------CSSCEEEEEEECCCCS
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHc-------CCCeEEEEEEECCCCC
Confidence 55589999999999988888887765543 2345666667766443
No 28
>3k8u_A Putative ABC transporter, ATP-binding protein COMA; cysteine protease, quorum-sensing, hydrolase; 1.90A {Streptococcus mutans}
Probab=21.92 E-value=1.1e+02 Score=23.03 Aligned_cols=45 Identities=20% Similarity=0.240 Sum_probs=27.0
Q ss_pred CccEEEEEee-CCcEEEEeC-Cc--ceeeChhhHHhhhcCcccCCCCCCceEEEEEEEeC
Q 017540 308 HGHYVSLVKS-HNHWLFFDD-EN--VEMIDESAVQTFFGSAQEYSSNTDHGYILFYESLG 363 (369)
Q Consensus 308 ~GHY~~~vr~-~~~W~~~nD-~~--V~~v~~~~v~~~~~~~~~~~~~~~~~y~l~Y~r~~ 363 (369)
.|||+...+- ++.++..|= .. ...++.++..+. .++++|+-++..
T Consensus 94 ~~hfvVl~~~~~~~v~I~DP~~g~~~~~ls~~ef~~~-----------w~G~~l~~~p~~ 142 (156)
T 3k8u_A 94 LQHYYVVYGSQNNQLIIGDPDPSVKVTRMSKERFQSE-----------WTGLAIFLAPQP 142 (156)
T ss_dssp EEEEEEEEEEETTEEEEEECSTTTEEEEEEHHHHHHH-----------EEEEEEEEEEC-
T ss_pred CcEEEEEEEEcCCEEEEEcCCCCcceEEEcHHHHHhh-----------CceEEEEEEcCc
Confidence 3799987765 444444442 22 466788887763 356666665543
No 29
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=21.83 E-value=1.9e+02 Score=19.71 Aligned_cols=52 Identities=15% Similarity=0.180 Sum_probs=36.1
Q ss_pred CCccEEEEEee-----------CCcEEEEeCCcceeeChhhHHhhhcCcccCCCCCCceEEEEEEEeCCCC
Q 017540 307 NHGHYVSLVKS-----------HNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYESLGAGS 366 (369)
Q Consensus 307 ~~GHY~~~vr~-----------~~~W~~~nD~~V~~v~~~~v~~~~~~~~~~~~~~~~~y~l~Y~r~~~~~ 366 (369)
..|.++..|.. ++..+.+|+..|...+.+++.+.+.. .....|.++|.+...
T Consensus 40 ~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~--------~~~v~l~v~r~~~~~ 102 (104)
T 1wi2_A 40 QLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILKT--------AREISMRVRFFSGPS 102 (104)
T ss_dssp CCCCEEEEECTTSHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHHH--------SSSEEEEEECCCCSC
T ss_pred CCCEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhC--------CCEEEEEEEECCCCC
Confidence 45677777653 67999999999988888888876553 244566666655543
No 30
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=21.82 E-value=1.7e+02 Score=19.04 Aligned_cols=39 Identities=10% Similarity=0.068 Sum_probs=28.0
Q ss_pred CCcEEEEeCCcceeeChhhHHhhhcCcccCCCCCCceEEEEEEEeC
Q 017540 318 HNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYESLG 363 (369)
Q Consensus 318 ~~~W~~~nD~~V~~v~~~~v~~~~~~~~~~~~~~~~~y~l~Y~r~~ 363 (369)
++....+|+..|...+.+++.+.... ......|.+.|.+
T Consensus 47 GD~I~~ing~~v~~~~~~~~~~~l~~-------~~~~v~l~v~R~~ 85 (87)
T 2pa1_A 47 GDIIVAINGESAEGMLHAEAQSKIRQ-------SPSPLRLQLDRIT 85 (87)
T ss_dssp TCEEEEETTEESTTCCHHHHHHHHHT-------CCSSEEEEEEECC
T ss_pred CCEEEEECCEECCCCCHHHHHHHHHc-------CCCeEEEEEEecC
Confidence 67999999999988777888776654 2255566666643
No 31
>3rii_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; alpha-beta-alpha fold, thiol hydroalse, cysteine protease, deubiquitinating enzyme; 2.00A {Homo sapiens} SCOP: d.3.1.0 PDB: 3ris_A 3sqa_A 3tb3_A 3a7s_A
Probab=20.40 E-value=60 Score=26.84 Aligned_cols=22 Identities=23% Similarity=0.191 Sum_probs=17.7
Q ss_pred CccEEEEEeeCCcEEEEeCCcc
Q 017540 308 HGHYVSLVKSHNHWLFFDDENV 329 (369)
Q Consensus 308 ~GHY~~~vr~~~~W~~~nD~~V 329 (369)
.-||+|||..+|+-|..|-.+-
T Consensus 167 ~~HFIafV~~dG~LyELDG~k~ 188 (233)
T 3rii_A 167 AFHFVSYVPVNGRLYELDGLRE 188 (233)
T ss_dssp GSEEEEEEEETTEEEEECTTSS
T ss_pred ceeEEEEEEeCCeEEEcCCCCC
Confidence 4599999998888888886653
No 32
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=20.28 E-value=3.9e+02 Score=22.43 Aligned_cols=85 Identities=9% Similarity=0.064 Sum_probs=42.6
Q ss_pred ccccccCCcceeeEEEecccCCceEEEEeeeeeeeccccccccccceeecCcccccCCCCCCCCceEEEEEEEEeecCCC
Q 017540 227 FFCDKCCSLQEAQKRMKIKKSPHTLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTAEDADIEYSLFAVVVHVGSGP 306 (369)
Q Consensus 227 ~~C~~C~~~~~~~~~~~i~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~p~~l~l~~~~~~~~~~Y~L~~vi~H~G~~~ 306 (369)
..|+.|+... .........+.=.|.-|.+.....-....++..+.+-..=||-+.+ .+.-...+.|+...... .
T Consensus 157 ~~Cp~C~~~~----f~l~~~~s~f~D~Q~ikiQE~pe~vp~G~~Prsi~V~l~~dLvd~~-~PGDrV~vtGI~~~~~~-~ 230 (279)
T 1ltl_A 157 SLCSECGGRS----FRLLQDESEFLDTQTLKLQEPLENLSGGEQPRQITVVLEDDLVDTL-TPGDIVRVTGTLRTVRD-E 230 (279)
T ss_dssp SCCTTTCCCC----EEECGGGCEEEEEEEEEEECCSTTCCSSCCCCEEEEEEEGGGTTCC-CTTCEEEEEEEEEEEEE-T
T ss_pred CcCCCCCCCC----cEEeccccEEEeeEEEEEecCcccCCCCCCCeEEEEEEcccccCcc-CCCCEEEEEEEEEEeeC-C
Confidence 4688888643 2223334444444544444433211122233333322222333322 24567889999877543 3
Q ss_pred CCccEEEEEee
Q 017540 307 NHGHYVSLVKS 317 (369)
Q Consensus 307 ~~GHY~~~vr~ 317 (369)
..+-|.+|+.-
T Consensus 231 ~~~~~~~~l~a 241 (279)
T 1ltl_A 231 RTKRFKNFIYG 241 (279)
T ss_dssp TTTEEEEEEEE
T ss_pred CCceEEEEEEE
Confidence 45778888764
No 33
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=20.05 E-value=1.4e+02 Score=17.76 Aligned_cols=28 Identities=21% Similarity=0.471 Sum_probs=16.8
Q ss_pred cccccccCCcceeeEEEecccC--CceEEE
Q 017540 226 KFFCDKCCSLQEAQKRMKIKKS--PHTLVI 253 (369)
Q Consensus 226 ~~~C~~C~~~~~~~~~~~i~~~--P~~L~i 253 (369)
...|++|+...-..-+..+.+. |..+++
T Consensus 9 ~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy 38 (50)
T 1tfi_A 9 LFTCGKCKKKNCTYTQVQTRSADEPMTTFV 38 (50)
T ss_dssp CSCCSSSCSSCEEEEEECSSSSSSCCEEEE
T ss_pred ccCCCCCCCCEEEEEEecCcCCCCCceEEE
Confidence 3679999986655444444444 544443
Done!