Query 017542
Match_columns 369
No_of_seqs 255 out of 3759
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 09:30:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017542.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017542hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 1.6E-27 3.4E-32 243.5 14.9 217 3-219 147-370 (968)
2 PLN00113 leucine-rich repeat r 99.9 6.4E-27 1.4E-31 239.0 16.2 281 2-282 170-485 (968)
3 PLN03210 Resistant to P. syrin 99.9 2.2E-25 4.7E-30 228.7 17.9 313 12-336 580-948 (1153)
4 PLN03210 Resistant to P. syrin 99.9 3.8E-23 8.2E-28 212.2 23.1 272 8-290 600-911 (1153)
5 KOG4194 Membrane glycoprotein 99.9 1.2E-25 2.7E-30 201.0 3.8 243 17-261 100-351 (873)
6 KOG0444 Cytoskeletal regulator 99.9 1.2E-26 2.6E-31 209.2 -3.5 274 12-289 95-379 (1255)
7 KOG4194 Membrane glycoprotein 99.9 6.9E-26 1.5E-30 202.6 0.2 273 8-282 113-426 (873)
8 KOG0444 Cytoskeletal regulator 99.9 1.1E-24 2.5E-29 196.6 -3.1 259 7-268 113-379 (1255)
9 KOG0472 Leucine-rich repeat pr 99.8 6.3E-23 1.4E-27 176.1 -6.3 247 9-262 57-308 (565)
10 KOG0472 Leucine-rich repeat pr 99.8 8.9E-22 1.9E-26 169.1 -8.8 258 19-283 45-308 (565)
11 PRK15370 E3 ubiquitin-protein 99.8 4.5E-18 9.7E-23 164.8 15.5 241 19-283 178-426 (754)
12 PRK15387 E3 ubiquitin-protein 99.8 5.9E-18 1.3E-22 163.1 15.5 231 3-261 208-455 (788)
13 PRK15370 E3 ubiquitin-protein 99.8 3.5E-18 7.5E-23 165.5 10.4 233 8-262 189-426 (754)
14 KOG0618 Serine/threonine phosp 99.7 8E-20 1.7E-24 172.0 -2.5 72 126-198 255-326 (1081)
15 KOG0618 Serine/threonine phosp 99.7 1.3E-19 2.7E-24 170.7 -1.7 263 18-286 218-490 (1081)
16 PRK15387 E3 ubiquitin-protein 99.7 5.9E-17 1.3E-21 156.3 15.8 236 20-289 202-438 (788)
17 KOG0617 Ras suppressor protein 99.7 8.1E-19 1.8E-23 134.3 -1.4 174 4-181 18-195 (264)
18 cd00116 LRR_RI Leucine-rich re 99.6 2.2E-17 4.8E-22 148.0 0.0 221 41-261 24-288 (319)
19 KOG4237 Extracellular matrix p 99.6 1.1E-16 2.4E-21 137.7 0.6 258 23-283 50-357 (498)
20 KOG0617 Ras suppressor protein 99.6 3E-17 6.5E-22 125.7 -3.7 157 86-245 32-190 (264)
21 cd00116 LRR_RI Leucine-rich re 99.6 2.2E-16 4.8E-21 141.5 0.3 219 44-262 2-261 (319)
22 KOG4237 Extracellular matrix p 99.6 1.5E-16 3.2E-21 137.0 -1.7 254 7-262 56-357 (498)
23 KOG4341 F-box protein containi 99.4 6.2E-16 1.3E-20 134.1 -9.0 295 41-348 139-456 (483)
24 KOG4658 Apoptotic ATPase [Sign 99.4 2.2E-13 4.7E-18 134.5 5.5 257 8-267 512-786 (889)
25 KOG4658 Apoptotic ATPase [Sign 99.3 5.9E-13 1.3E-17 131.5 3.7 257 32-291 513-789 (889)
26 KOG4341 F-box protein containi 99.2 2.7E-13 5.9E-18 117.9 -6.9 298 20-334 139-467 (483)
27 KOG3207 Beta-tubulin folding c 99.2 7E-12 1.5E-16 109.9 1.3 200 61-261 119-336 (505)
28 KOG0532 Leucine-rich repeat (L 99.2 3.4E-12 7.3E-17 115.4 -1.1 211 45-261 55-270 (722)
29 KOG3207 Beta-tubulin folding c 99.2 1.3E-11 2.7E-16 108.3 2.2 201 41-241 122-339 (505)
30 COG4886 Leucine-rich repeat (L 99.1 7.8E-11 1.7E-15 108.8 7.5 193 67-264 97-290 (394)
31 PF14580 LRR_9: Leucine-rich r 99.1 2.5E-11 5.3E-16 96.9 2.8 129 155-290 15-147 (175)
32 KOG1909 Ran GTPase-activating 99.1 3.4E-12 7.4E-17 108.8 -2.5 221 41-262 31-309 (382)
33 COG4886 Leucine-rich repeat (L 99.1 2.8E-10 6.2E-15 105.0 7.9 195 45-244 98-293 (394)
34 KOG1259 Nischarin, modulator o 99.1 4.4E-11 9.5E-16 100.2 1.4 123 158-283 283-410 (490)
35 PF14580 LRR_9: Leucine-rich r 99.0 1.3E-10 2.8E-15 92.7 3.6 127 132-261 16-150 (175)
36 KOG1259 Nischarin, modulator o 99.0 1.9E-11 4E-16 102.4 -1.7 216 41-262 183-410 (490)
37 KOG0532 Leucine-rich repeat (L 99.0 1E-11 2.2E-16 112.3 -4.6 191 86-282 74-270 (722)
38 KOG1909 Ran GTPase-activating 98.9 4.7E-10 1E-14 95.9 3.2 103 179-282 154-280 (382)
39 KOG2120 SCF ubiquitin ligase, 98.8 9.2E-11 2E-15 98.2 -5.6 173 112-284 186-375 (419)
40 KOG2120 SCF ubiquitin ligase, 98.8 5.6E-11 1.2E-15 99.5 -7.0 175 64-238 186-373 (419)
41 PLN03150 hypothetical protein; 98.7 7.7E-08 1.7E-12 93.4 9.2 106 65-170 420-526 (623)
42 KOG0531 Protein phosphatase 1, 98.6 7.8E-09 1.7E-13 95.8 0.5 171 41-219 96-269 (414)
43 PLN03150 hypothetical protein; 98.5 2.3E-07 5E-12 90.1 7.5 106 88-193 419-526 (623)
44 KOG1859 Leucine-rich repeat pr 98.5 2.5E-09 5.5E-14 99.8 -6.8 124 136-262 165-290 (1096)
45 PF13855 LRR_8: Leucine rich r 98.4 1.7E-07 3.7E-12 61.4 3.2 57 41-97 2-59 (61)
46 PRK15386 type III secretion pr 98.4 1.8E-06 4E-11 77.6 10.4 136 84-238 49-187 (426)
47 KOG0531 Protein phosphatase 1, 98.4 4.3E-08 9.2E-13 90.9 -0.3 212 41-261 73-287 (414)
48 KOG2982 Uncharacterized conser 98.4 3.1E-07 6.6E-12 77.4 4.0 226 62-289 44-285 (418)
49 PF13855 LRR_8: Leucine rich r 98.4 4.1E-07 8.9E-12 59.6 3.7 58 64-121 2-59 (61)
50 KOG1859 Leucine-rich repeat pr 98.2 2.9E-08 6.2E-13 93.0 -5.6 190 86-283 83-290 (1096)
51 KOG2982 Uncharacterized conser 98.2 1.9E-07 4.1E-12 78.7 -0.9 81 41-121 72-156 (418)
52 PRK15386 type III secretion pr 98.2 9.2E-06 2E-10 73.2 8.9 31 182-214 156-186 (426)
53 PF12799 LRR_4: Leucine Rich r 98.2 2.5E-06 5.4E-11 51.3 3.4 39 228-267 1-39 (44)
54 COG5238 RNA1 Ran GTPase-activa 98.1 1.4E-06 3E-11 72.6 2.1 193 59-261 26-252 (388)
55 PF12799 LRR_4: Leucine Rich r 98.0 4.8E-06 1E-10 50.1 3.2 40 205-244 1-40 (44)
56 KOG3665 ZYG-1-like serine/thre 98.0 2.9E-06 6.3E-11 82.6 2.1 156 87-261 122-285 (699)
57 KOG1947 Leucine rich repeat pr 97.9 3E-06 6.4E-11 80.5 0.1 108 41-148 189-308 (482)
58 KOG1947 Leucine rich repeat pr 97.8 3.5E-07 7.5E-12 86.8 -6.8 109 110-218 187-308 (482)
59 KOG3665 ZYG-1-like serine/thre 97.8 5.5E-06 1.2E-10 80.7 -0.1 103 158-261 147-260 (699)
60 KOG4579 Leucine-rich repeat (L 97.6 2.4E-06 5.2E-11 63.9 -3.6 77 184-260 55-132 (177)
61 KOG1644 U2-associated snRNP A' 97.6 9.6E-05 2.1E-09 59.2 5.0 99 161-260 44-149 (233)
62 KOG4579 Leucine-rich repeat (L 97.6 2.9E-06 6.4E-11 63.4 -3.5 86 159-244 53-139 (177)
63 COG5238 RNA1 Ran GTPase-activa 97.6 1.8E-05 3.9E-10 66.2 0.5 179 39-218 29-255 (388)
64 KOG1644 U2-associated snRNP A' 97.4 0.00038 8.3E-09 55.9 5.5 81 181-262 41-124 (233)
65 KOG2739 Leucine-rich acidic nu 97.2 0.00029 6.4E-09 58.8 3.1 58 204-261 64-126 (260)
66 KOG2739 Leucine-rich acidic nu 96.9 0.0006 1.3E-08 57.0 2.8 56 41-97 44-101 (260)
67 KOG2123 Uncharacterized conser 96.9 6.3E-05 1.4E-09 63.2 -3.0 97 41-141 20-123 (388)
68 KOG2123 Uncharacterized conser 96.8 7.8E-05 1.7E-09 62.7 -3.8 97 18-117 18-123 (388)
69 PF13306 LRR_5: Leucine rich r 96.4 0.012 2.7E-07 44.6 6.6 11 203-213 79-89 (129)
70 PF13306 LRR_5: Leucine rich r 96.4 0.0088 1.9E-07 45.5 5.6 81 59-143 8-89 (129)
71 PF00560 LRR_1: Leucine Rich R 96.0 0.0036 7.7E-08 31.2 1.0 20 229-248 1-20 (22)
72 PF13504 LRR_7: Leucine rich r 95.4 0.013 2.8E-07 27.1 1.6 15 229-243 2-16 (17)
73 PF00560 LRR_1: Leucine Rich R 95.1 0.015 3.2E-07 28.9 1.4 16 42-57 2-17 (22)
74 KOG3864 Uncharacterized conser 94.9 0.0049 1.1E-07 49.7 -1.0 84 206-289 102-193 (221)
75 KOG3864 Uncharacterized conser 93.1 0.022 4.7E-07 46.1 -0.5 15 135-149 151-165 (221)
76 KOG4308 LRR-containing protein 92.1 0.0013 2.8E-08 61.7 -10.1 36 65-100 89-128 (478)
77 smart00370 LRR Leucine-rich re 91.7 0.19 4.1E-06 26.0 2.2 20 228-247 2-21 (26)
78 smart00369 LRR_TYP Leucine-ric 91.7 0.19 4.1E-06 26.0 2.2 20 228-247 2-21 (26)
79 smart00367 LRR_CC Leucine-rich 90.9 0.17 3.7E-06 26.2 1.5 17 250-266 1-17 (26)
80 KOG4308 LRR-containing protein 90.0 0.0016 3.5E-08 61.0 -11.5 174 89-262 89-301 (478)
81 KOG0473 Leucine-rich repeat pr 83.8 0.016 3.6E-07 47.8 -7.4 85 179-263 39-123 (326)
82 smart00364 LRR_BAC Leucine-ric 83.2 0.87 1.9E-05 23.5 1.4 18 228-245 2-19 (26)
83 KOG0473 Leucine-rich repeat pr 78.3 0.13 2.8E-06 42.8 -4.1 83 135-218 42-124 (326)
84 PF13516 LRR_6: Leucine Rich r 77.7 0.56 1.2E-05 23.6 -0.4 12 63-74 2-13 (24)
85 smart00365 LRR_SD22 Leucine-ri 74.9 2.9 6.3E-05 21.6 1.8 16 228-243 2-17 (26)
86 KOG3763 mRNA export factor TAP 69.3 1.5 3.3E-05 41.2 -0.0 65 61-125 216-284 (585)
87 KOG3763 mRNA export factor TAP 63.8 3 6.6E-05 39.3 0.8 34 182-215 218-254 (585)
88 smart00368 LRR_RI Leucine rich 63.7 6.5 0.00014 20.6 1.8 14 228-241 2-15 (28)
89 KOG4242 Predicted myosin-I-bin 34.1 2.6E+02 0.0057 26.5 8.0 35 207-241 415-453 (553)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.95 E-value=1.6e-27 Score=243.50 Aligned_cols=217 Identities=23% Similarity=0.274 Sum_probs=147.6
Q ss_pred CCCCcCCccCCCCC-CCCCccEEecCCCCCccccCCccC---CeeEEecCCccCc-ccCccCCCCCCCCEEeCcCCcccc
Q 017542 3 MAGCESLRCFPQNI-HFISSIKIDCYKCVNLREFPRISG---NVVELNLMCTPIE-EVPLSIECLPNLETLEMSFCNSLK 77 (369)
Q Consensus 3 l~~c~~l~~~p~~~-~~~~L~~L~l~~~~~l~~~~~~~~---~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~ 77 (369)
+.++.--..+|..+ .+++|++|++++|.....+|..+. +|++|++++|.+. .+|..+..+++|++|++++|....
T Consensus 147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 226 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG 226 (968)
T ss_pred CcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC
Confidence 44443333566655 778888888888875556665544 7788888777765 566667777888888888777666
Q ss_pred cccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCC
Q 017542 78 RLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGN 157 (369)
Q Consensus 78 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 157 (369)
.+|..++++++|++|++++|.....+|..++.+++|++|++++|...+.+|..+..+++|++|++++|.....+|..+..
T Consensus 227 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~ 306 (968)
T PLN00113 227 EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ 306 (968)
T ss_pred cCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcC
Confidence 77777777778888888777666667777777777777777777666666666777777777777776665566666667
Q ss_pred CcchhhhccCcccCC-CCCcccccCCCCcEEeecCCCC-CCCCccccCCCCCcEEeccCCCCcc
Q 017542 158 LKSLERLHAGLLAIP-QAPSSIVDLNKLETLSLFECRG-LVLPPLLSGLSSLKKLELGDCEIME 219 (369)
Q Consensus 158 l~~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~ 219 (369)
+++|+.|++++|.+. ..|..+..+++|+.|++++|.. ..+|..+..+++|+.|++++|.+.+
T Consensus 307 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~ 370 (968)
T PLN00113 307 LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTG 370 (968)
T ss_pred CCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEe
Confidence 777777777776655 3445566666666666666663 2455555556666666666665543
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.94 E-value=6.4e-27 Score=239.02 Aligned_cols=281 Identities=22% Similarity=0.259 Sum_probs=180.9
Q ss_pred CCCCCcCCccCCCCC-CCCCccEEecCCCCCccccCCccC---CeeEEecCCccCc-ccCccCCCCCCCCEEeCcCCccc
Q 017542 2 IMAGCESLRCFPQNI-HFISSIKIDCYKCVNLREFPRISG---NVVELNLMCTPIE-EVPLSIECLPNLETLEMSFCNSL 76 (369)
Q Consensus 2 ~l~~c~~l~~~p~~~-~~~~L~~L~l~~~~~l~~~~~~~~---~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~ 76 (369)
++.++.-...+|..+ .+++|++|++++|.....+|..++ +|++|++++|.+. .+|..+..+++|++|++++|...
T Consensus 170 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 249 (968)
T PLN00113 170 DLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT 249 (968)
T ss_pred ECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceec
Confidence 345554344567666 788888888888885556675554 7888888887776 57777788888888888888777
Q ss_pred ccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccC
Q 017542 77 KRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLG 156 (369)
Q Consensus 77 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 156 (369)
+.+|..+.++++|++|++++|......|..+..+++|++|++++|.....+|..+..+++|+.|++++|...+..|..+.
T Consensus 250 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 329 (968)
T PLN00113 250 GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT 329 (968)
T ss_pred cccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHh
Confidence 77777788888888888888776666777777888888888887766666777777777888888777766666666677
Q ss_pred CCcchhhhccCcccCC-CCCcccccCCCCcEEeecCCCC-CCCCccccC------------------------CCCCcEE
Q 017542 157 NLKSLERLHAGLLAIP-QAPSSIVDLNKLETLSLFECRG-LVLPPLLSG------------------------LSSLKKL 210 (369)
Q Consensus 157 ~l~~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~l~~~~~-~~~~~~~~~------------------------~~~L~~L 210 (369)
.+++|+.|++++|.+. .+|..+..+++|+.|++++|.. ..+|..+.. +++|+.|
T Consensus 330 ~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L 409 (968)
T PLN00113 330 SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRV 409 (968)
T ss_pred cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEE
Confidence 7777777777777765 4555666666777777766652 233444444 4444444
Q ss_pred eccCCCCcc-CCCCCCCCCCCCEEEccCCcCC-ccchhhccCCcCcEecccCCcccccCCCC--Ccccceeccccc
Q 017542 211 ELGDCEIME-IPPDIGCLSSLESLNLSGNNIE-SLPTSISQLSRLRWLYLVNCVKLQSLPEL--PLLLVMLGASDC 282 (369)
Q Consensus 211 ~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~L~~L~l~~c 282 (369)
++++|.+.+ ++..+..++.|+.|++++|.++ .++..+..+++|+.|++++|.....+|.. ..+|+.|++++|
T Consensus 410 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n 485 (968)
T PLN00113 410 RLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRN 485 (968)
T ss_pred ECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCC
Confidence 444444443 3333444455555555555444 33333444555555555555333333321 134455555444
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=2.2e-25 Score=228.65 Aligned_cols=313 Identities=27% Similarity=0.422 Sum_probs=219.8
Q ss_pred CCCCC-CC-CCccEEecCCCCCccccCCccC--CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCC
Q 017542 12 FPQNI-HF-ISSIKIDCYKCVNLREFPRISG--NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLK 87 (369)
Q Consensus 12 ~p~~~-~~-~~L~~L~l~~~~~l~~~~~~~~--~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 87 (369)
+|..+ .+ +.|+.|++.++. ++.+|..+. +|++|++.++.+..+|..+..+++|++|++++|.....+|. ++.++
T Consensus 580 lp~~~~~lp~~Lr~L~~~~~~-l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~ 657 (1153)
T PLN03210 580 LPEGFDYLPPKLRLLRWDKYP-LRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMAT 657 (1153)
T ss_pred cCcchhhcCcccEEEEecCCC-CCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCC
Confidence 45555 34 359999999987 888887665 99999999999999998888999999999999887888876 78899
Q ss_pred CCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccC
Q 017542 88 SLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAG 167 (369)
Q Consensus 88 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 167 (369)
+|+.|++++|.....+|..+..+++|++|++++|..+..+|..+ ++++|+.|++++|..+..+|.. ..+|++|+++
T Consensus 658 ~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~ 733 (1153)
T PLN03210 658 NLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLD 733 (1153)
T ss_pred cccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecC
Confidence 99999999998888899999999999999999998888888755 7899999999999877776643 4567788888
Q ss_pred cccCCCCCcccccCC-------------------------------CCcEEeecCCC-CCCCCccccCCCCCcEEeccCC
Q 017542 168 LLAIPQAPSSIVDLN-------------------------------KLETLSLFECR-GLVLPPLLSGLSSLKKLELGDC 215 (369)
Q Consensus 168 ~~~~~~~~~~l~~~~-------------------------------~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~ 215 (369)
++.+..+|..+ .++ +|+.|++++|. ...+|..++++++|+.|++++|
T Consensus 734 ~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C 812 (1153)
T PLN03210 734 ETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENC 812 (1153)
T ss_pred CCccccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCC
Confidence 88877666543 233 45555555554 3345555555556666666555
Q ss_pred CCcc-CCCCCCCCCCCCEEEccCC-cCCccchhhccCCcCcEecccCCcccccCCC---CCcccceeccccccccccCCC
Q 017542 216 EIME-IPPDIGCLSSLESLNLSGN-NIESLPTSISQLSRLRWLYLVNCVKLQSLPE---LPLLLVMLGASDCKRLQFLPE 290 (369)
Q Consensus 216 ~~~~-~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~L~~L~l~~c~~L~~l~~ 290 (369)
...+ +|... .+++|++|++++| .+..+|.. .++|++|++++| .++.+|. .+++|+.|++.+|++|+.++.
T Consensus 813 ~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n-~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~ 887 (1153)
T PLN03210 813 INLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRT-GIEEVPWWIEKFSNLSFLDMNGCNNLQRVSL 887 (1153)
T ss_pred CCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCC-CCccChHHHhcCCCCCEEECCCCCCcCccCc
Confidence 4322 44332 4555666666655 23333321 245666666555 4555553 346788888999999988876
Q ss_pred ch---hhhHHHhHHHHHhhhcccccccc------------CCCCCcEEEecCccCcchhhH
Q 017542 291 LT---SCLEELDASILQALSNRTGERLS------------KHMSPVQLIFANCLKLNESIW 336 (369)
Q Consensus 291 ~~---~~l~~l~~~~~~~l~~~~~~~~~------------~~~~~~~~~~~~c~~l~~~~~ 336 (369)
.. .+++.+++.+|.+++.+.....+ .......+.+.+|.++...++
T Consensus 888 ~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~a~ 948 (1153)
T PLN03210 888 NISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQEAL 948 (1153)
T ss_pred ccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCchhh
Confidence 54 45556678888877655432211 111123456789988887665
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=3.8e-23 Score=212.22 Aligned_cols=272 Identities=31% Similarity=0.443 Sum_probs=219.3
Q ss_pred CCccCCCCCCCCCccEEecCCCCCccccCCccC---CeeEEecCCc-cCcccCccCCCCCCCCEEeCcCCcccccccccc
Q 017542 8 SLRCFPQNIHFISSIKIDCYKCVNLREFPRISG---NVVELNLMCT-PIEEVPLSIECLPNLETLEMSFCNSLKRLSTSI 83 (369)
Q Consensus 8 ~l~~~p~~~~~~~L~~L~l~~~~~l~~~~~~~~---~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 83 (369)
.++.+|..+.+.+|+.|++.++. +..++.... +|+.|+++++ .++.+|. +..+++|++|++++|.....+|..+
T Consensus 600 ~l~~lP~~f~~~~L~~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si 677 (1153)
T PLN03210 600 PLRCMPSNFRPENLVKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSI 677 (1153)
T ss_pred CCCCCCCcCCccCCcEEECcCcc-ccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhh
Confidence 46778888888999999999988 788776544 9999999654 4677775 7888999999999999888999889
Q ss_pred cCCCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCccc--------
Q 017542 84 CKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESL-------- 155 (369)
Q Consensus 84 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-------- 155 (369)
..+++|+.|++++|.....+|..+ ++++|++|++++|..+..+|.. .++|++|+++++. +..+|..+
T Consensus 678 ~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~-i~~lP~~~~l~~L~~L 752 (1153)
T PLN03210 678 QYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETA-IEEFPSNLRLENLDEL 752 (1153)
T ss_pred hccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCc-cccccccccccccccc
Confidence 999999999999998888888765 7899999999998777666543 3567777777754 33333221
Q ss_pred ----------------------CCCcchhhhccCccc-CCCCCcccccCCCCcEEeecCCC-CCCCCccccCCCCCcEEe
Q 017542 156 ----------------------GNLKSLERLHAGLLA-IPQAPSSIVDLNKLETLSLFECR-GLVLPPLLSGLSSLKKLE 211 (369)
Q Consensus 156 ----------------------~~l~~L~~L~l~~~~-~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~ 211 (369)
...++|+.|++++|. +..+|..+.++++|+.|++++|. ...+|... .+++|+.|+
T Consensus 753 ~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~ 831 (1153)
T PLN03210 753 ILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLD 831 (1153)
T ss_pred cccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEE
Confidence 113467888888775 44688889999999999999987 66777654 689999999
Q ss_pred ccCCCCcc-CCCCCCCCCCCCEEEccCCcCCccchhhccCCcCcEecccCCcccccCCCCC---cccceecccccccccc
Q 017542 212 LGDCEIME-IPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPELP---LLLVMLGASDCKRLQF 287 (369)
Q Consensus 212 l~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~---~~L~~L~l~~c~~L~~ 287 (369)
+++|.... ++. ...+|++|++++|.++.+|..+..+++|+.|++++|..++.++... ++|+.+++.+|++|+.
T Consensus 832 Ls~c~~L~~~p~---~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 832 LSGCSRLRTFPD---ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred CCCCCccccccc---cccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccc
Confidence 99986554 433 2468999999999999999999999999999999999999987643 5788889999999986
Q ss_pred CCC
Q 017542 288 LPE 290 (369)
Q Consensus 288 l~~ 290 (369)
+..
T Consensus 909 ~~l 911 (1153)
T PLN03210 909 ASW 911 (1153)
T ss_pred ccC
Confidence 643
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.91 E-value=1.2e-25 Score=201.01 Aligned_cols=243 Identities=23% Similarity=0.221 Sum_probs=179.7
Q ss_pred CCCCccEEecCCCCCccccCCccC---CeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCccccccc-ccccCCCCCcE
Q 017542 17 HFISSIKIDCYKCVNLREFPRISG---NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLS-TSICKLKSLRS 91 (369)
Q Consensus 17 ~~~~L~~L~l~~~~~l~~~~~~~~---~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~ 91 (369)
++++|+.+++.+|. +..+|.+.. +|+.|++.+|.|..+.. .+..++.|++||++.|.. ..++ ..|..-.++++
T Consensus 100 nl~nLq~v~l~~N~-Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~i-s~i~~~sfp~~~ni~~ 177 (873)
T KOG4194|consen 100 NLPNLQEVNLNKNE-LTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLI-SEIPKPSFPAKVNIKK 177 (873)
T ss_pred cCCcceeeeeccch-hhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchh-hcccCCCCCCCCCceE
Confidence 78889999998888 888887665 79999999999887654 577788999999998654 4443 45666688999
Q ss_pred EecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccC
Q 017542 92 LDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAI 171 (369)
Q Consensus 92 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 171 (369)
|++++|.+.+.-...|.++.+|..|.++.|+....-+..|+++++|+.|++..|..-..-...|..+++|+.|.+..|.+
T Consensus 178 L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I 257 (873)
T KOG4194|consen 178 LNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDI 257 (873)
T ss_pred EeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCc
Confidence 99999876666667788888999999997765555556788899999999988543222244578888999999998888
Q ss_pred CCCCc-ccccCCCCcEEeecCCCCCCCCc-cccCCCCCcEEeccCCCCcc-CCCCCCCCCCCCEEEccCCcCCccc-hhh
Q 017542 172 PQAPS-SIVDLNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIME-IPPDIGCLSSLESLNLSGNNIESLP-TSI 247 (369)
Q Consensus 172 ~~~~~-~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~~~~-~~~ 247 (369)
..+.+ .|..+.++++|+++.|+...+.+ ++-++.+|+.|+++.|.+.. -++.+..+++|++|+|++|+++.++ ..+
T Consensus 258 ~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf 337 (873)
T KOG4194|consen 258 SKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSF 337 (873)
T ss_pred ccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHH
Confidence 86643 45668888888888888655543 56677788888888888877 3455677788888888888777665 333
Q ss_pred ccCCcCcEecccCC
Q 017542 248 SQLSRLRWLYLVNC 261 (369)
Q Consensus 248 ~~~~~L~~L~l~~~ 261 (369)
..+..|++|++++|
T Consensus 338 ~~L~~Le~LnLs~N 351 (873)
T KOG4194|consen 338 RVLSQLEELNLSHN 351 (873)
T ss_pred HHHHHhhhhccccc
Confidence 44444444444444
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.91 E-value=1.2e-26 Score=209.25 Aligned_cols=274 Identities=28% Similarity=0.369 Sum_probs=222.3
Q ss_pred CCCCC-CCCCccEEecCCCCCccccCCccC---CeeEEecCCccCcccCcc-CCCCCCCCEEeCcCCcccccccccccCC
Q 017542 12 FPQNI-HFISSIKIDCYKCVNLREFPRISG---NVVELNLMCTPIEEVPLS-IECLPNLETLEMSFCNSLKRLSTSICKL 86 (369)
Q Consensus 12 ~p~~~-~~~~L~~L~l~~~~~l~~~~~~~~---~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 86 (369)
+|+.+ .+..|..|++++|. ++++|..+. ++-.|++++|.|..||.. +.++..|-+||+++| ..+.+|+.+.++
T Consensus 95 iP~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL 172 (1255)
T KOG0444|consen 95 IPTDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRL 172 (1255)
T ss_pred CCchhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHH
Confidence 66655 99999999999999 999998776 888999999999999874 568888999999985 566778888889
Q ss_pred CCCcEEecCCCcCCccCchhhhccCccceeeccccccc-cccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhc
Q 017542 87 KSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNI-KELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLH 165 (369)
Q Consensus 87 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 165 (369)
.+|+.|++++|+....--..+.++++|+.|.+++.+.. ..+|.++..+.+|..++++. +.+..+|+.+.++++|+.|+
T Consensus 173 ~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLN 251 (1255)
T KOG0444|consen 173 SMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECLYKLRNLRRLN 251 (1255)
T ss_pred hhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchHHHhhhhhhheec
Confidence 99999999998655432333446777888888865443 47888888888888888887 55677788888888899999
Q ss_pred cCcccCCCCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCc--cCCCCCCCCCCCCEEEccCCcCCcc
Q 017542 166 AGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIM--EIPPDIGCLSSLESLNLSGNNIESL 243 (369)
Q Consensus 166 l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~l~~~ 243 (369)
+++|.++.+........+|++|++++|+.+.+|+.+.++++|+.|.+.+|++. ++|..++.+..|+.+..++|.+.-+
T Consensus 252 LS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElV 331 (1255)
T KOG0444|consen 252 LSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELV 331 (1255)
T ss_pred cCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccC
Confidence 99998887777777788889999999988888888888888888888888764 3888888888888888888888888
Q ss_pred chhhccCCcCcEecccCCcccccCCC---CCcccceeccccccccccCC
Q 017542 244 PTSISQLSRLRWLYLVNCVKLQSLPE---LPLLLVMLGASDCKRLQFLP 289 (369)
Q Consensus 244 ~~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~L~~L~l~~c~~L~~l~ 289 (369)
|.+++.|+.|+.|.++.| .+..+|+ ..+.|+.|++...++|-.=|
T Consensus 332 PEglcRC~kL~kL~L~~N-rLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 332 PEGLCRCVKLQKLKLDHN-RLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred chhhhhhHHHHHhccccc-ceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 888888999999998887 4555665 44778888888888876443
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.91 E-value=6.9e-26 Score=202.60 Aligned_cols=273 Identities=23% Similarity=0.181 Sum_probs=156.8
Q ss_pred CCccCCCCC-CCCCccEEecCCCCCccccCC----ccCCeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCcccccccc
Q 017542 8 SLRCFPQNI-HFISSIKIDCYKCVNLREFPR----ISGNVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLST 81 (369)
Q Consensus 8 ~l~~~p~~~-~~~~L~~L~l~~~~~l~~~~~----~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~ 81 (369)
.|+.+|... ...+++.|++.+|. +.++.. ..+.|+.|+++-|.|.+++. .+..-.++++|++++|...+.-..
T Consensus 113 ~Lt~IP~f~~~sghl~~L~L~~N~-I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~ 191 (873)
T KOG4194|consen 113 ELTRIPRFGHESGHLEKLDLRHNL-ISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETG 191 (873)
T ss_pred hhhhcccccccccceeEEeeeccc-cccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccc
Confidence 355667666 44557777777776 555431 22266666666666666654 344445666666666555443344
Q ss_pred cccCCCCCcEEecCCCcCCccCchhhhccCccceeecccccccc------------------------ccchhhhcCCCC
Q 017542 82 SICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIK------------------------ELPSSIENLEGL 137 (369)
Q Consensus 82 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~------------------------~~~~~~~~l~~L 137 (369)
.|..+.+|..|.+++|...+..+..|.++++|+.|++..|+.-. --..+|..+.++
T Consensus 192 ~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~km 271 (873)
T KOG4194|consen 192 HFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKM 271 (873)
T ss_pred cccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeeccc
Confidence 55556666666666654444444555556666666666554322 222233444555
Q ss_pred CeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCC-CcccccCCCCcEEeecCCCCCCCCc-cccCCCCCcEEeccCC
Q 017542 138 KQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQA-PSSIVDLNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDC 215 (369)
Q Consensus 138 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~ 215 (369)
++|++..|+....-..++.+++.|+.|++++|.|..+ ++.+..+++|+.|+++.|.+..+++ .+..+..|++|.+++|
T Consensus 272 e~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~N 351 (873)
T KOG4194|consen 272 EHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHN 351 (873)
T ss_pred ceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhccccc
Confidence 5555555443333334555666666666666666633 3555666677777777766665553 4555566666666666
Q ss_pred CCccCCCC-CCCCCCCCEEEccCCcCC----ccchhhccCCcCcEecccCCcccccCCC----CCcccceeccccc
Q 017542 216 EIMEIPPD-IGCLSSLESLNLSGNNIE----SLPTSISQLSRLRWLYLVNCVKLQSLPE----LPLLLVMLGASDC 282 (369)
Q Consensus 216 ~~~~~~~~-~~~~~~L~~L~l~~~~l~----~~~~~~~~~~~L~~L~l~~~~~l~~~~~----~~~~L~~L~l~~c 282 (369)
.+..+.+. +..+.+|++|||++|.++ +-...+.++++|+.|.+.+| ++++++. .+++||.|++.+.
T Consensus 352 si~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 352 SIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred chHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCCC
Confidence 66654332 455667777777777655 22334556777777777776 6666664 3356666666554
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=1.1e-24 Score=196.57 Aligned_cols=259 Identities=23% Similarity=0.305 Sum_probs=228.0
Q ss_pred cCCccCCCCC-CCCCccEEecCCCCCccccCCccC----CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccc
Q 017542 7 ESLRCFPQNI-HFISSIKIDCYKCVNLREFPRISG----NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLST 81 (369)
Q Consensus 7 ~~l~~~p~~~-~~~~L~~L~l~~~~~l~~~~~~~~----~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 81 (369)
..|.+.|... .-+++-+|++++|. +..+|.... .|-.|++++|++..+|.....+.+|++|++++|+....-..
T Consensus 113 NqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLr 191 (1255)
T KOG0444|consen 113 NQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLR 191 (1255)
T ss_pred hhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHh
Confidence 4677889888 77889999999999 999997655 67789999999999999899999999999999886554444
Q ss_pred cccCCCCCcEEecCCCcCC-ccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcc
Q 017542 82 SICKLKSLRSLDLSYCINL-ESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKS 160 (369)
Q Consensus 82 ~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 160 (369)
.+..+.+|++|.+++.+.. ..+|..+..+.+|..+|++ ++.+..+|..+.++++|+.|++++|. ++.+.-..+...+
T Consensus 192 QLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS-~N~Lp~vPecly~l~~LrrLNLS~N~-iteL~~~~~~W~~ 269 (1255)
T KOG0444|consen 192 QLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS-ENNLPIVPECLYKLRNLRRLNLSGNK-ITELNMTEGEWEN 269 (1255)
T ss_pred cCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccc-ccCCCcchHHHhhhhhhheeccCcCc-eeeeeccHHHHhh
Confidence 5666889999999987654 4589999999999999999 56688889999999999999999954 5555555677889
Q ss_pred hhhhccCcccCCCCCcccccCCCCcEEeecCCC--CCCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCC
Q 017542 161 LERLHAGLLAIPQAPSSIVDLNKLETLSLFECR--GLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGN 238 (369)
Q Consensus 161 L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 238 (369)
|+.|+++.|.++.+|+.+..+++|+.|...+|. ...+|..++++..|+.+..++|.+.-+|..+..|+.|+.|.|++|
T Consensus 270 lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~N 349 (1255)
T KOG0444|consen 270 LETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHN 349 (1255)
T ss_pred hhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhccccc
Confidence 999999999999999999999999999999998 567899999999999999999999889999999999999999999
Q ss_pred cCCccchhhccCCcCcEecccCCcccccCC
Q 017542 239 NIESLPTSISQLSRLRWLYLVNCVKLQSLP 268 (369)
Q Consensus 239 ~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 268 (369)
.+..+|+++--++.|+.||+..|+.+.--|
T Consensus 350 rLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 350 RLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred ceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 999999999999999999999999876543
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.82 E-value=6.3e-23 Score=176.14 Aligned_cols=247 Identities=32% Similarity=0.421 Sum_probs=211.7
Q ss_pred CccCCCCC-CCCCccEEecCCCCCccccCCccC---CeeEEecCCccCcccCccCCCCCCCCEEeCcCCccccccccccc
Q 017542 9 LRCFPQNI-HFISSIKIDCYKCVNLREFPRISG---NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSIC 84 (369)
Q Consensus 9 l~~~p~~~-~~~~L~~L~l~~~~~l~~~~~~~~---~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 84 (369)
++.+-... .+..+.++++.+|. +.+.|+..+ .++.++++++++..+|..++..++|+.++.++|. ...+++.++
T Consensus 57 l~~l~~dl~nL~~l~vl~~~~n~-l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~-~~el~~~i~ 134 (565)
T KOG0472|consen 57 LEVLREDLKNLACLTVLNVHDNK-LSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNE-LKELPDSIG 134 (565)
T ss_pred hhhccHhhhcccceeEEEeccch-hhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccc-eeecCchHH
Confidence 34433333 78889999999998 888888777 7888999999999999999999999999999965 456667788
Q ss_pred CCCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhh
Q 017542 85 KLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERL 164 (369)
Q Consensus 85 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 164 (369)
.+..|+.++..+| ...+.|..+.++.+|..+++.+|.. ..+|+..-+++.|++++... +.++.+|..++.+.+|+-|
T Consensus 135 ~~~~l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~n~l-~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~lg~l~~L~~L 211 (565)
T KOG0472|consen 135 RLLDLEDLDATNN-QISSLPEDMVNLSKLSKLDLEGNKL-KALPENHIAMKRLKHLDCNS-NLLETLPPELGGLESLELL 211 (565)
T ss_pred HHhhhhhhhcccc-ccccCchHHHHHHHHHHhhccccch-hhCCHHHHHHHHHHhcccch-hhhhcCChhhcchhhhHHH
Confidence 8999999998885 4556788899999999999997664 44555555589999999877 5678899999999999999
Q ss_pred ccCcccCCCCCcccccCCCCcEEeecCCCCCCCCcc-ccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCcc
Q 017542 165 HAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPL-LSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESL 243 (369)
Q Consensus 165 ~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 243 (369)
++.+|.+..+| .|.+|+.|++|.++.|....+|.. ...++++..|++..|++.++|+.+.-+++|++||+++|.++.+
T Consensus 212 yL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~L 290 (565)
T KOG0472|consen 212 YLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSL 290 (565)
T ss_pred HhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccC
Confidence 99999999998 788999999999999998888864 4488999999999999999999988899999999999999999
Q ss_pred chhhccCCcCcEecccCCc
Q 017542 244 PTSISQLSRLRWLYLVNCV 262 (369)
Q Consensus 244 ~~~~~~~~~L~~L~l~~~~ 262 (369)
|..++.+ .|++|-+.||+
T Consensus 291 p~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 291 PYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred Ccccccc-eeeehhhcCCc
Confidence 9999999 99999999986
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.78 E-value=8.9e-22 Score=169.15 Aligned_cols=258 Identities=29% Similarity=0.363 Sum_probs=194.8
Q ss_pred CCccEEecCCCCCccccCCc---cCCeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecC
Q 017542 19 ISSIKIDCYKCVNLREFPRI---SGNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLS 95 (369)
Q Consensus 19 ~~L~~L~l~~~~~l~~~~~~---~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 95 (369)
..++.+.+++|. +..+.+- ...+.+|++.++....+|..++.+..++.++.++| ....+|..+..+..|..++.+
T Consensus 45 v~l~~lils~N~-l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n-~ls~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 45 VDLQKLILSHND-LEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHN-KLSELPEQIGSLISLVKLDCS 122 (565)
T ss_pred cchhhhhhccCc-hhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccc-hHhhccHHHhhhhhhhhhhcc
Confidence 346677777776 4444332 22677777777777777777777777777777774 455667777777888888887
Q ss_pred CCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCC
Q 017542 96 YCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAP 175 (369)
Q Consensus 96 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 175 (369)
++ ....+++.++.+-.|..++..+ +.+...|+++.++.++..+++.++ .....|.....++.|+++++..|-+..+|
T Consensus 123 ~n-~~~el~~~i~~~~~l~dl~~~~-N~i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld~~~N~L~tlP 199 (565)
T KOG0472|consen 123 SN-ELKELPDSIGRLLDLEDLDATN-NQISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIAMKRLKHLDCNSNLLETLP 199 (565)
T ss_pred cc-ceeecCchHHHHhhhhhhhccc-cccccCchHHHHHHHHHHhhcccc-chhhCCHHHHHHHHHHhcccchhhhhcCC
Confidence 74 4455667777788888887774 445567777778888888888884 44555555555888999998888888889
Q ss_pred cccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCC-CCCCCCCEEEccCCcCCccchhhccCCcCc
Q 017542 176 SSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDI-GCLSSLESLNLSGNNIESLPTSISQLSRLR 254 (369)
Q Consensus 176 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~ 254 (369)
..++.+.+|..|++.+|....+| .|.+|..|++++++.|.+..+|... ..++++..||+.+|+++.+|+.+..+.+|.
T Consensus 200 ~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~ 278 (565)
T KOG0472|consen 200 PELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLE 278 (565)
T ss_pred hhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhh
Confidence 88998999999999999888888 4788888999999999888877664 478899999999999999999999999999
Q ss_pred EecccCCcccccCCCCCcc--cceecccccc
Q 017542 255 WLYLVNCVKLQSLPELPLL--LVMLGASDCK 283 (369)
Q Consensus 255 ~L~l~~~~~l~~~~~~~~~--L~~L~l~~c~ 283 (369)
+||+++| .++++|....+ |++|.+.|.|
T Consensus 279 rLDlSNN-~is~Lp~sLgnlhL~~L~leGNP 308 (565)
T KOG0472|consen 279 RLDLSNN-DISSLPYSLGNLHLKFLALEGNP 308 (565)
T ss_pred hhcccCC-ccccCCcccccceeeehhhcCCc
Confidence 9999988 67777765443 4555566554
No 11
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.77 E-value=4.5e-18 Score=164.76 Aligned_cols=241 Identities=20% Similarity=0.284 Sum_probs=178.9
Q ss_pred CCccEEecCCCCCccccCCccC-CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCC
Q 017542 19 ISSIKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYC 97 (369)
Q Consensus 19 ~~L~~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 97 (369)
.+...|+++++. +..+|..++ .++.|++++|.++.+|..+. ++|++|++++|. .+.+|..+. .+|+.|++++|
T Consensus 178 ~~~~~L~L~~~~-LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 178 NNKTELRLKILG-LTTIPACIPEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred cCceEEEeCCCC-cCcCCcccccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccccEEECcCC
Confidence 346788898877 888887555 89999999999998887543 589999999875 446665443 57999999997
Q ss_pred cCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcc
Q 017542 98 INLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSS 177 (369)
Q Consensus 98 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 177 (369)
... .+|..+. .+|++|++++|. +..+|..+. ++|+.|++++|. +..+|..+. ++|+.|++++|.+..+|..
T Consensus 252 ~L~-~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~ 322 (754)
T PRK15370 252 RIT-ELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNS-IRTLPAHLP--SGITHLNVQSNSLTALPET 322 (754)
T ss_pred ccC-cCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCCc-cccCcccch--hhHHHHHhcCCccccCCcc
Confidence 654 5666543 579999998654 445665443 589999999864 455664432 4789999999998887765
Q ss_pred cccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccchhhccCCcCcEec
Q 017542 178 IVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLY 257 (369)
Q Consensus 178 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~ 257 (369)
+ .++|+.|++++|....+|..+. ++|+.|++++|.+..+|..+ .++|++|++++|.++.+|..+. +.|+.|+
T Consensus 323 l--~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~--~sL~~Ld 394 (754)
T PRK15370 323 L--PPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETL--PPTITTLDVSRNALTNLPENLP--AALQIMQ 394 (754)
T ss_pred c--cccceeccccCCccccCChhhc--CcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCCCCCHhHH--HHHHHHh
Confidence 4 3689999999998877876553 68999999999988777644 3689999999999998887654 3688999
Q ss_pred ccCCcccccCCCCC-------cccceecccccc
Q 017542 258 LVNCVKLQSLPELP-------LLLVMLGASDCK 283 (369)
Q Consensus 258 l~~~~~l~~~~~~~-------~~L~~L~l~~c~ 283 (369)
+++| .++.+|... +.+..+++.+.+
T Consensus 395 Ls~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 395 ASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred hccC-CcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 9988 566766532 344556665543
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.77 E-value=5.9e-18 Score=163.14 Aligned_cols=231 Identities=22% Similarity=0.195 Sum_probs=128.4
Q ss_pred CCCCcCCccCCCCCCCCCccEEecCCCCCccccCCccCCeeEEecCCccCcccCccCCCCCCCCEEeCcCCccccccccc
Q 017542 3 MAGCESLRCFPQNIHFISSIKIDCYKCVNLREFPRISGNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTS 82 (369)
Q Consensus 3 l~~c~~l~~~p~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 82 (369)
+.++ +++++|..+ .++|+.|++.+|. +..+|...++|++|++++|.++.+|.. .++|+.|++++|. ...+|..
T Consensus 208 Ls~~-~LtsLP~~l-~~~L~~L~L~~N~-Lt~LP~lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~-L~~Lp~l 280 (788)
T PRK15387 208 VGES-GLTTLPDCL-PAHITTLVIPDNN-LTSLPALPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP-LTHLPAL 280 (788)
T ss_pred cCCC-CCCcCCcch-hcCCCEEEccCCc-CCCCCCCCCCCcEEEecCCccCcccCc---ccccceeeccCCc-hhhhhhc
Confidence 3443 677888866 3578999999887 888888777999999999998888753 3678888888764 3344432
Q ss_pred ccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchh
Q 017542 83 ICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLE 162 (369)
Q Consensus 83 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 162 (369)
..+|+.|++++|.. ..+|. ..++|++|++++|.. ..+|.. ..+|+.|++++|. ++.+|.. ..+|+
T Consensus 281 ---p~~L~~L~Ls~N~L-t~LP~---~p~~L~~LdLS~N~L-~~Lp~l---p~~L~~L~Ls~N~-L~~LP~l---p~~Lq 345 (788)
T PRK15387 281 ---PSGLCKLWIFGNQL-TSLPV---LPPGLQELSVSDNQL-ASLPAL---PSELCKLWAYNNQ-LTSLPTL---PSGLQ 345 (788)
T ss_pred ---hhhcCEEECcCCcc-ccccc---cccccceeECCCCcc-ccCCCC---cccccccccccCc-ccccccc---ccccc
Confidence 24566777776543 33443 235677777775533 233321 1234444444432 2223321 12344
Q ss_pred hhccCcccCCCCCcccc-----------------cCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCCC
Q 017542 163 RLHAGLLAIPQAPSSIV-----------------DLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIG 225 (369)
Q Consensus 163 ~L~l~~~~~~~~~~~l~-----------------~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 225 (369)
.|++++|.++.+|.... ...+|+.|++++|....+|.. .++|+.|++++|.+..+|..
T Consensus 346 ~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~LssIP~l-- 420 (788)
T PRK15387 346 ELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTSLPML-- 420 (788)
T ss_pred eEecCCCccCCCCCCCcccceehhhccccccCcccccccceEEecCCcccCCCCc---ccCCCEEEccCCcCCCCCcc--
Confidence 45555544444432110 013455555555554444432 23455555555555554432
Q ss_pred CCCCCCEEEccCCcCCccchhhccCCcCcEecccCC
Q 017542 226 CLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNC 261 (369)
Q Consensus 226 ~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~ 261 (369)
+.+|+.|++++|.++.+|..+..+++|+.|++++|
T Consensus 421 -~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N 455 (788)
T PRK15387 421 -PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGN 455 (788)
T ss_pred -hhhhhhhhhccCcccccChHHhhccCCCeEECCCC
Confidence 23455555555555555555555555555555555
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.75 E-value=3.5e-18 Score=165.54 Aligned_cols=233 Identities=23% Similarity=0.354 Sum_probs=183.8
Q ss_pred CCccCCCCCCCCCccEEecCCCCCccccCCccC-CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCC
Q 017542 8 SLRCFPQNIHFISSIKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKL 86 (369)
Q Consensus 8 ~l~~~p~~~~~~~L~~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 86 (369)
+++++|..+ .++++.|++++|. +..+|.... +|++|++++|.++.+|..+. ++|+.|++++|... .+|..+.
T Consensus 189 ~LtsLP~~I-p~~L~~L~Ls~N~-LtsLP~~l~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~-- 261 (754)
T PRK15370 189 GLTTIPACI-PEQITTLILDNNE-LKSLPENLQGNIKTLYANSNQLTSIPATLP--DTIQEMELSINRIT-ELPERLP-- 261 (754)
T ss_pred CcCcCCccc-ccCCcEEEecCCC-CCcCChhhccCCCEEECCCCccccCChhhh--ccccEEECcCCccC-cCChhHh--
Confidence 577788765 4679999999998 888887555 99999999999999887543 58999999997654 6776554
Q ss_pred CCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhcc
Q 017542 87 KSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHA 166 (369)
Q Consensus 87 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 166 (369)
.+|+.|++++|.. ..+|..+. ++|++|++++|. +..+|..+. ++|+.|++++|. +..+|..+ .++|+.|++
T Consensus 262 s~L~~L~Ls~N~L-~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp--~sL~~L~Ls~N~-Lt~LP~~l--~~sL~~L~L 332 (754)
T PRK15370 262 SALQSLDLFHNKI-SCLPENLP--EELRYLSVYDNS-IRTLPAHLP--SGITHLNVQSNS-LTALPETL--PPGLKTLEA 332 (754)
T ss_pred CCCCEEECcCCcc-CccccccC--CCCcEEECCCCc-cccCcccch--hhHHHHHhcCCc-cccCCccc--cccceeccc
Confidence 5899999998754 45676443 589999999875 445554432 478999999865 44555433 368999999
Q ss_pred CcccCCCCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccchh
Q 017542 167 GLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTS 246 (369)
Q Consensus 167 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 246 (369)
++|.++.+|..+. ++|+.|++++|....+|..+. ++|+.|++++|.+..+|..+. ..|+.|++++|+++.+|..
T Consensus 333 s~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L~~LP~s 406 (754)
T PRK15370 333 GENALTSLPASLP--PELQVLDVSKNQITVLPETLP--PTITTLDVSRNALTNLPENLP--AALQIMQASRNNLVRLPES 406 (754)
T ss_pred cCCccccCChhhc--CcccEEECCCCCCCcCChhhc--CCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCcccCchh
Confidence 9999998887663 799999999999888886553 689999999999998877543 4799999999999988765
Q ss_pred h----ccCCcCcEecccCCc
Q 017542 247 I----SQLSRLRWLYLVNCV 262 (369)
Q Consensus 247 ~----~~~~~L~~L~l~~~~ 262 (369)
+ +.++++..+++.+|+
T Consensus 407 l~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 407 LPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred HHHHhhcCCCccEEEeeCCC
Confidence 4 345889999999996
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.74 E-value=8e-20 Score=171.99 Aligned_cols=72 Identities=28% Similarity=0.315 Sum_probs=44.3
Q ss_pred ccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCC
Q 017542 126 ELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLP 198 (369)
Q Consensus 126 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 198 (369)
.+|.|++.+.+|+.+.+..|. +..+|..+....+|+.+.+..|.+..+|......+.|++|++..|....+|
T Consensus 255 ~lp~wi~~~~nle~l~~n~N~-l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp 326 (1081)
T KOG0618|consen 255 NLPEWIGACANLEALNANHNR-LVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLP 326 (1081)
T ss_pred cchHHHHhcccceEecccchh-HHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccc
Confidence 344555666666666666533 344555555566666666666666666666666777777777666654444
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.74 E-value=1.3e-19 Score=170.68 Aligned_cols=263 Identities=26% Similarity=0.328 Sum_probs=180.5
Q ss_pred CCCccEEecCCCCCccccCCccC-CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCC
Q 017542 18 FISSIKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSY 96 (369)
Q Consensus 18 ~~~L~~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 96 (369)
-++++.|+..+|......+...+ +|++++++.+.+..+|.++..+.+|+.++..+|.. ..+|..+....+|+.|.+.+
T Consensus 218 g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~ 296 (1081)
T KOG0618|consen 218 GPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAY 296 (1081)
T ss_pred CcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhh
Confidence 44566666666663322333333 77777777777777777677777777777777544 55565566667777777766
Q ss_pred CcCCccCchhhhccCccceeeccccccccccchh-hhcCC-CCCeEeecCCCCCCCCCc-ccCCCcchhhhccCcccCC-
Q 017542 97 CINLESFPEILEKMELLEEINLEEASNIKELPSS-IENLE-GLKQLKLTGCTKLGSLPE-SLGNLKSLERLHAGLLAIP- 172 (369)
Q Consensus 97 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~-~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~- 172 (369)
| ....+|.....++.|++|++..|.. ..+|.. +.... +++.++.+. ..+...|. .-.....|+.|++.+|.++
T Consensus 297 n-el~yip~~le~~~sL~tLdL~~N~L-~~lp~~~l~v~~~~l~~ln~s~-n~l~~lp~~~e~~~~~Lq~LylanN~Ltd 373 (1081)
T KOG0618|consen 297 N-ELEYIPPFLEGLKSLRTLDLQSNNL-PSLPDNFLAVLNASLNTLNVSS-NKLSTLPSYEENNHAALQELYLANNHLTD 373 (1081)
T ss_pred h-hhhhCCCcccccceeeeeeehhccc-cccchHHHhhhhHHHHHHhhhh-ccccccccccchhhHHHHHHHHhcCcccc
Confidence 4 3445566666677777777775543 333332 22222 244444444 22333331 1234567899999999887
Q ss_pred CCCcccccCCCCcEEeecCCCCCCCCc-cccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccchhhccCC
Q 017542 173 QAPSSIVDLNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLS 251 (369)
Q Consensus 173 ~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~ 251 (369)
..-..+....+|+.|++++|....+|+ .+.+++.|+.|+++||++..++..+..++.|++|...+|.+..+| .+..++
T Consensus 374 ~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~ 452 (1081)
T KOG0618|consen 374 SCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLP 452 (1081)
T ss_pred cchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcC
Confidence 333567778899999999999888886 677889999999999999999988889999999999999999999 788899
Q ss_pred cCcEecccCCcccccC--CC-CC-cccceeccccccccc
Q 017542 252 RLRWLYLVNCVKLQSL--PE-LP-LLLVMLGASDCKRLQ 286 (369)
Q Consensus 252 ~L~~L~l~~~~~l~~~--~~-~~-~~L~~L~l~~c~~L~ 286 (369)
.|+.+|++.| .++.+ +. .+ +.|++|+++|...+.
T Consensus 453 qL~~lDlS~N-~L~~~~l~~~~p~p~LkyLdlSGN~~l~ 490 (1081)
T KOG0618|consen 453 QLKVLDLSCN-NLSEVTLPEALPSPNLKYLDLSGNTRLV 490 (1081)
T ss_pred cceEEecccc-hhhhhhhhhhCCCcccceeeccCCcccc
Confidence 9999999877 44432 22 34 789999999887643
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.73 E-value=5.9e-17 Score=156.27 Aligned_cols=236 Identities=27% Similarity=0.301 Sum_probs=175.9
Q ss_pred CccEEecCCCCCccccCCccC-CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCc
Q 017542 20 SSIKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCI 98 (369)
Q Consensus 20 ~L~~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 98 (369)
.-..|+++++. +..+|+.++ +|+.|++..|.++.+|.. .++|++|++++|. ++.+|.. .++|+.|++++|.
T Consensus 202 ~~~~LdLs~~~-LtsLP~~l~~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~-LtsLP~l---p~sL~~L~Ls~N~ 273 (788)
T PRK15387 202 GNAVLNVGESG-LTTLPDCLPAHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQ-LTSLPVL---PPGLLELSIFSNP 273 (788)
T ss_pred CCcEEEcCCCC-CCcCCcchhcCCCEEEccCCcCCCCCCC---CCCCcEEEecCCc-cCcccCc---ccccceeeccCCc
Confidence 35689999997 889998666 999999999999998863 5899999999974 4456642 4689999999975
Q ss_pred CCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCccc
Q 017542 99 NLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSI 178 (369)
Q Consensus 99 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l 178 (369)
...+|.. .++|+.|++++|. +..+|. ..++|+.|++++|. +..+|.. ..+|+.|++++|.+..+|..
T Consensus 274 -L~~Lp~l---p~~L~~L~Ls~N~-Lt~LP~---~p~~L~~LdLS~N~-L~~Lp~l---p~~L~~L~Ls~N~L~~LP~l- 340 (788)
T PRK15387 274 -LTHLPAL---PSGLCKLWIFGNQ-LTSLPV---LPPGLQELSVSDNQ-LASLPAL---PSELCKLWAYNNQLTSLPTL- 340 (788)
T ss_pred -hhhhhhc---hhhcCEEECcCCc-cccccc---cccccceeECCCCc-cccCCCC---cccccccccccCcccccccc-
Confidence 3455543 3678899999875 445554 34789999999964 4455542 34688899999999888752
Q ss_pred ccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccchhhccCCcCcEecc
Q 017542 179 VDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYL 258 (369)
Q Consensus 179 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l 258 (369)
..+|+.|++++|....+|.. .++|+.|++++|.+..+|.. ..+|+.|++++|.++.+|.. .++|+.|++
T Consensus 341 --p~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdL 409 (788)
T PRK15387 341 --PSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLPVL---PSELKELMV 409 (788)
T ss_pred --ccccceEecCCCccCCCCCC---CcccceehhhccccccCccc---ccccceEEecCCcccCCCCc---ccCCCEEEc
Confidence 35899999999998888763 35678888888888877653 35688888888888877743 357888888
Q ss_pred cCCcccccCCCCCcccceeccccccccccCC
Q 017542 259 VNCVKLQSLPELPLLLVMLGASDCKRLQFLP 289 (369)
Q Consensus 259 ~~~~~l~~~~~~~~~L~~L~l~~c~~L~~l~ 289 (369)
++| .++.+|..+.+|+.|+++++ +++.+|
T Consensus 410 S~N-~LssIP~l~~~L~~L~Ls~N-qLt~LP 438 (788)
T PRK15387 410 SGN-RLTSLPMLPSGLLSLSVYRN-QLTRLP 438 (788)
T ss_pred cCC-cCCCCCcchhhhhhhhhccC-cccccC
Confidence 887 57777776666777777653 344444
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.70 E-value=8.1e-19 Score=134.27 Aligned_cols=174 Identities=28% Similarity=0.400 Sum_probs=148.3
Q ss_pred CCCcCCccCCCCCCCCCccEEecCCCCCccccCCccC---CeeEEecCCccCcccCccCCCCCCCCEEeCcCCccccccc
Q 017542 4 AGCESLRCFPQNIHFISSIKIDCYKCVNLREFPRISG---NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLS 80 (369)
Q Consensus 4 ~~c~~l~~~p~~~~~~~L~~L~l~~~~~l~~~~~~~~---~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~ 80 (369)
+|.+++.++|..+.+.+++.|.+++|. +..+|..+. +|+.|++++|.++++|..++.+++|+.|++.- +....+|
T Consensus 18 rgiSsf~~~~gLf~~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgm-nrl~~lp 95 (264)
T KOG0617|consen 18 RGISSFEELPGLFNMSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM-NRLNILP 95 (264)
T ss_pred cccccHhhcccccchhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecch-hhhhcCc
Confidence 466778889999999999999999999 888888776 88899999999999999999999999999987 4566788
Q ss_pred ccccCCCCCcEEecCCCcCC-ccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCc
Q 017542 81 TSICKLKSLRSLDLSYCINL-ESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLK 159 (369)
Q Consensus 81 ~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 159 (369)
..|+.++.|++||+.+|+.. ..+|..|-.++.|+-|.+++| ....+|..++++++|+.|.+..++ +-.+|..++.++
T Consensus 96 rgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt 173 (264)
T KOG0617|consen 96 RGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLT 173 (264)
T ss_pred cccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHH
Confidence 88999999999999987654 458888888999999999965 467788889999999999998855 455678888999
Q ss_pred chhhhccCcccCCCCCcccccC
Q 017542 160 SLERLHAGLLAIPQAPSSIVDL 181 (369)
Q Consensus 160 ~L~~L~l~~~~~~~~~~~l~~~ 181 (369)
.|++|++.+|.+..+|..++.+
T Consensus 174 ~lrelhiqgnrl~vlppel~~l 195 (264)
T KOG0617|consen 174 RLRELHIQGNRLTVLPPELANL 195 (264)
T ss_pred HHHHHhcccceeeecChhhhhh
Confidence 9999999999988887666543
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.64 E-value=2.2e-17 Score=148.00 Aligned_cols=221 Identities=24% Similarity=0.232 Sum_probs=127.0
Q ss_pred CeeEEecCCccCc-----ccCccCCCCCCCCEEeCcCCccc------ccccccccCCCCCcEEecCCCcCCccCchhhhc
Q 017542 41 NVVELNLMCTPIE-----EVPLSIECLPNLETLEMSFCNSL------KRLSTSICKLKSLRSLDLSYCINLESFPEILEK 109 (369)
Q Consensus 41 ~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~~~~~------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 109 (369)
+|++++++++.++ .++..+...++|++++++++... ..++..+..+++|++|++++|......+..+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 5667777666653 34444556666777777665433 122334555667777777776555444444444
Q ss_pred cCc---cceeecccccccc----ccchhhhcC-CCCCeEeecCCCCCC----CCCcccCCCcchhhhccCcccCCC----
Q 017542 110 MEL---LEEINLEEASNIK----ELPSSIENL-EGLKQLKLTGCTKLG----SLPESLGNLKSLERLHAGLLAIPQ---- 173 (369)
Q Consensus 110 l~~---L~~L~l~~~~~~~----~~~~~~~~l-~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~---- 173 (369)
+.+ |++|++++|.... .+...+..+ ++|+.|++++|.... .+...+..+++|++|++++|.+..
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 183 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR 183 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHH
Confidence 444 7777777665432 122234445 677777777765442 122334455667777777766652
Q ss_pred -CCcccccCCCCcEEeecCCCCC-----CCCccccCCCCCcEEeccCCCCcc--CC---CC-CCCCCCCCEEEccCCcCC
Q 017542 174 -APSSIVDLNKLETLSLFECRGL-----VLPPLLSGLSSLKKLELGDCEIME--IP---PD-IGCLSSLESLNLSGNNIE 241 (369)
Q Consensus 174 -~~~~l~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~--~~---~~-~~~~~~L~~L~l~~~~l~ 241 (369)
++..+...++|++|++++|... .+...+..+++|++|++++|.+.+ +. .. ....+.|++|++++|.++
T Consensus 184 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 184 ALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 2223444567777777777643 223345566777777777777664 10 00 012367778888777765
Q ss_pred -----ccchhhccCCcCcEecccCC
Q 017542 242 -----SLPTSISQLSRLRWLYLVNC 261 (369)
Q Consensus 242 -----~~~~~~~~~~~L~~L~l~~~ 261 (369)
.+...+..+++|+++++++|
T Consensus 264 ~~~~~~l~~~~~~~~~L~~l~l~~N 288 (319)
T cd00116 264 DDGAKDLAEVLAEKESLLELDLRGN 288 (319)
T ss_pred cHHHHHHHHHHhcCCCccEEECCCC
Confidence 23344555677777877777
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.60 E-value=1.1e-16 Score=137.73 Aligned_cols=258 Identities=22% Similarity=0.241 Sum_probs=170.8
Q ss_pred EEecCCCCCccccCCccC-CeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCC
Q 017542 23 KIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINL 100 (369)
Q Consensus 23 ~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 100 (369)
..+.++-. +.+||..++ .-..+.+..|.|+.||. .|..+++|+.|||++|.....-|..|.+++.|..|.+.+++.+
T Consensus 50 ~VdCr~~G-L~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI 128 (498)
T KOG4237|consen 50 IVDCRGKG-LTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI 128 (498)
T ss_pred eEEccCCC-cccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence 34444444 788887776 78888888888888876 6888888888898888777777788888888888888775566
Q ss_pred ccCc-hhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCc-ccCCCcchhhhccCcccCC---CC-
Q 017542 101 ESFP-EILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPE-SLGNLKSLERLHAGLLAIP---QA- 174 (369)
Q Consensus 101 ~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~---~~- 174 (369)
+++| ..|+.+..|+.|.+.-|...-.....+..++++..|.+.++. ...+++ .+..+..++.+.+..|.+. .+
T Consensus 129 ~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~ 207 (498)
T KOG4237|consen 129 TDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLP 207 (498)
T ss_pred hhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccc
Confidence 6655 567788888888777665554555677777888888777743 344443 5666677777766665521 00
Q ss_pred ---------CcccccCC----------------------CCcEE---eecCC-CCCCCCc-cccCCCCCcEEeccCCCCc
Q 017542 175 ---------PSSIVDLN----------------------KLETL---SLFEC-RGLVLPP-LLSGLSSLKKLELGDCEIM 218 (369)
Q Consensus 175 ---------~~~l~~~~----------------------~L~~L---~l~~~-~~~~~~~-~~~~~~~L~~L~l~~~~~~ 218 (369)
+-.++... .++.+ -.+.+ .+...|. .|.++++|++|++++|+++
T Consensus 208 wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~ 287 (498)
T KOG4237|consen 208 WLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT 287 (498)
T ss_pred hhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc
Confidence 00011110 01111 01112 2333332 5778888999999999988
Q ss_pred cC-CCCCCCCCCCCEEEccCCcCCccc-hhhccCCcCcEecccCCcccccCCC-C---Ccccceecccccc
Q 017542 219 EI-PPDIGCLSSLESLNLSGNNIESLP-TSISQLSRLRWLYLVNCVKLQSLPE-L---PLLLVMLGASDCK 283 (369)
Q Consensus 219 ~~-~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~-~---~~~L~~L~l~~c~ 283 (369)
.+ ..++.....+++|.|..|++..+. ..+.++..|+.|++.+| +++.+.. . ..+|.+|.+.+.|
T Consensus 288 ~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N-~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 288 RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDN-QITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred hhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCC-eeEEEecccccccceeeeeehccCc
Confidence 85 345677888889999999888766 44577888888999888 5665432 2 2456666655443
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.59 E-value=3e-17 Score=125.72 Aligned_cols=157 Identities=30% Similarity=0.502 Sum_probs=69.4
Q ss_pred CCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhc
Q 017542 86 LKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLH 165 (369)
Q Consensus 86 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 165 (369)
+.+.+.|.+++| ..+.+|..+..+.+|+.|++. |+.++++|..+..+++|+.|++.. +.+...|.+|+.++.|+.|+
T Consensus 32 ~s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~-nnqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHN-KLTVVPPNIAELKNLEVLNLS-NNQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccC-ceeecCCcHHHhhhhhhhhcc-cchhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhh
Confidence 333444444442 222333334444444444444 223334444444444444444443 23334444444444444444
Q ss_pred cCcccCC--CCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCcc
Q 017542 166 AGLLAIP--QAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESL 243 (369)
Q Consensus 166 l~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 243 (369)
+++|.+. .+|..|..++.|+.|.+++|....+|...+++++|+.|.+..|.+.++|..++.+..|++|++.+|+++-+
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vl 188 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVL 188 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeec
Confidence 4444433 33444444444444444444444444444444444444444444444444444444455555555544444
Q ss_pred ch
Q 017542 244 PT 245 (369)
Q Consensus 244 ~~ 245 (369)
|.
T Consensus 189 pp 190 (264)
T KOG0617|consen 189 PP 190 (264)
T ss_pred Ch
Confidence 43
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.58 E-value=2.2e-16 Score=141.50 Aligned_cols=219 Identities=23% Similarity=0.185 Sum_probs=154.0
Q ss_pred EEecCCccCc--ccCccCCCCCCCCEEeCcCCcccc----cccccccCCCCCcEEecCCCcCCc------cCchhhhccC
Q 017542 44 ELNLMCTPIE--EVPLSIECLPNLETLEMSFCNSLK----RLSTSICKLKSLRSLDLSYCINLE------SFPEILEKME 111 (369)
Q Consensus 44 ~L~l~~~~~~--~l~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~------~~~~~~~~l~ 111 (369)
.|++.++.++ .....+..+++|+.|++++|.... .++..+...++|++++++++.... .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 3556566554 333345566789999999987533 345556678889999999875541 2345677788
Q ss_pred ccceeeccccccccccchhhhcCCC---CCeEeecCCCCCC----CCCcccCCC-cchhhhccCcccCC-----CCCccc
Q 017542 112 LLEEINLEEASNIKELPSSIENLEG---LKQLKLTGCTKLG----SLPESLGNL-KSLERLHAGLLAIP-----QAPSSI 178 (369)
Q Consensus 112 ~L~~L~l~~~~~~~~~~~~~~~l~~---L~~L~l~~~~~~~----~~~~~~~~l-~~L~~L~l~~~~~~-----~~~~~l 178 (369)
+|++|++++|......+..+..+.+ |++|++++|.... .+...+..+ ++|+++++++|.++ .+...+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 9999999988776555555555554 9999999976542 122334566 88999999999877 233456
Q ss_pred ccCCCCcEEeecCCCCC-----CCCccccCCCCCcEEeccCCCCcc-----CCCCCCCCCCCCEEEccCCcCCcc--chh
Q 017542 179 VDLNKLETLSLFECRGL-----VLPPLLSGLSSLKKLELGDCEIME-----IPPDIGCLSSLESLNLSGNNIESL--PTS 246 (369)
Q Consensus 179 ~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~l~~~--~~~ 246 (369)
..+++|++|++++|... .++..+...++|+.|++++|.+.+ +...+..+++|++|++++|.+++. ...
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l 241 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence 66789999999998854 223345556799999999998864 333456778999999999988742 221
Q ss_pred hcc----CCcCcEecccCCc
Q 017542 247 ISQ----LSRLRWLYLVNCV 262 (369)
Q Consensus 247 ~~~----~~~L~~L~l~~~~ 262 (369)
... .+.|++|++++|.
T Consensus 242 ~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 242 ASALLSPNISLLTLSLSCND 261 (319)
T ss_pred HHHHhccCCCceEEEccCCC
Confidence 222 4799999999983
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.57 E-value=1.5e-16 Score=136.96 Aligned_cols=254 Identities=20% Similarity=0.177 Sum_probs=188.2
Q ss_pred cCCccCCCCCCCCCccEEecCCCCCccccCCc-cC---CeeEEecCCccCcccC-ccCCCCCCCCEEeCcCCcccccccc
Q 017542 7 ESLRCFPQNIHFISSIKIDCYKCVNLREFPRI-SG---NVVELNLMCTPIEEVP-LSIECLPNLETLEMSFCNSLKRLST 81 (369)
Q Consensus 7 ~~l~~~p~~~~~~~L~~L~l~~~~~l~~~~~~-~~---~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~ 81 (369)
.+|+++|..+ .+.-..+.+..|. ++.+|+. |+ +|+.|+++.|.|+.|. ..|..+++|..|-+.+++.++++|.
T Consensus 56 ~GL~eVP~~L-P~~tveirLdqN~-I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k 133 (498)
T KOG4237|consen 56 KGLTEVPANL-PPETVEIRLDQNQ-ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK 133 (498)
T ss_pred CCcccCcccC-CCcceEEEeccCC-cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence 5688888887 4456789999998 9999863 44 9999999999999774 5789999999999998778888874
Q ss_pred -cccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCC----------
Q 017542 82 -SICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGS---------- 150 (369)
Q Consensus 82 -~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~---------- 150 (369)
.|.++..|+.|.+.-|...-.....+..+++|..|.+.+|.....-...+..+.+++.+.+..+..+..
T Consensus 134 ~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~ 213 (498)
T KOG4237|consen 134 GAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDL 213 (498)
T ss_pred hHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHH
Confidence 678899999999998877777888999999999999998776554444777888888888877653211
Q ss_pred --CCcccCC--Cc---c-----------------hhhh--cc-CcccCC-CCC-cccccCCCCcEEeecCCCCCCCC-cc
Q 017542 151 --LPESLGN--LK---S-----------------LERL--HA-GLLAIP-QAP-SSIVDLNKLETLSLFECRGLVLP-PL 200 (369)
Q Consensus 151 --~~~~~~~--l~---~-----------------L~~L--~l-~~~~~~-~~~-~~l~~~~~L~~L~l~~~~~~~~~-~~ 200 (369)
.+..++. +. . ++.+ .+ ..+... ..| ..|..+++|++|++++|.++.+. .+
T Consensus 214 a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~a 293 (498)
T KOG4237|consen 214 AMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGA 293 (498)
T ss_pred hhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhh
Confidence 1111111 10 0 1111 00 111111 112 24677899999999999977665 47
Q ss_pred ccCCCCCcEEeccCCCCccCCC-CCCCCCCCCEEEccCCcCCcc-chhhccCCcCcEecccCCc
Q 017542 201 LSGLSSLKKLELGDCEIMEIPP-DIGCLSSLESLNLSGNNIESL-PTSISQLSRLRWLYLVNCV 262 (369)
Q Consensus 201 ~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~ 262 (369)
|.+..+++.|.+..|++..+.. .+.++..|+.|+|.+|+|+.+ |..+.....|.+|++-.|+
T Consensus 294 Fe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 294 FEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred hcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 8888999999999999887433 367788999999999999944 5667778889999887765
No 23
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.43 E-value=6.2e-16 Score=134.14 Aligned_cols=295 Identities=19% Similarity=0.229 Sum_probs=181.4
Q ss_pred CeeEEecCCccCc---ccCccCCCCCCCCEEeCcCCccccccc--ccccCCCCCcEEecCCCcCCccCc--hhhhccCcc
Q 017542 41 NVVELNLMCTPIE---EVPLSIECLPNLETLEMSFCNSLKRLS--TSICKLKSLRSLDLSYCINLESFP--EILEKMELL 113 (369)
Q Consensus 41 ~L~~L~l~~~~~~---~l~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~l~~L 113 (369)
.|+.|++++..-. .+.....++|+++.|.+.+|..+++.. ..-..+++|++|++..|...+... .....|++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 5677777544322 233334567777777777777555321 222447777777777766554422 344567777
Q ss_pred ceeeccccccccc--cchhhhcCCCCCeEeecCCCCCCC--CCcccCCCcchhhhccCcccCCCCCc---ccccCCCCcE
Q 017542 114 EEINLEEASNIKE--LPSSIENLEGLKQLKLTGCTKLGS--LPESLGNLKSLERLHAGLLAIPQAPS---SIVDLNKLET 186 (369)
Q Consensus 114 ~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~---~l~~~~~L~~ 186 (369)
+++++++|..+.. +.....++..++.+...+|...+. +...-..+..+.++++..|....-.+ .-..+..|+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 7777777766552 333345566666666666654332 11111334455556655553221111 1123677888
Q ss_pred EeecCCCCCC---CCccccCCCCCcEEeccCCCCcc---CCCCCCCCCCCCEEEccCCcCC---ccchhhccCCcCcEec
Q 017542 187 LSLFECRGLV---LPPLLSGLSSLKKLELGDCEIME---IPPDIGCLSSLESLNLSGNNIE---SLPTSISQLSRLRWLY 257 (369)
Q Consensus 187 L~l~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~L~~L~l~~~~l~---~~~~~~~~~~~L~~L~ 257 (369)
++.+++.... +...-.++.+|+.+.+++|+.-+ +...-.+++.|+.+++.++... .+-..-.+++.|+++.
T Consensus 299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls 378 (483)
T KOG4341|consen 299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS 378 (483)
T ss_pred hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence 8888877321 11234467888888888887432 3333467788888888887433 2334446788889998
Q ss_pred ccCCcccccCCCCCcccceeccccccccccCCCchhhhHHHhHHHHHhhhccccccccCCCCCcEEEecCccCcchhhHH
Q 017542 258 LVNCVKLQSLPELPLLLVMLGASDCKRLQFLPELTSCLEELDASILQALSNRTGERLSKHMSPVQLIFANCLKLNESIWA 337 (369)
Q Consensus 258 l~~~~~l~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~l~~~~~~ 337 (369)
+++|..+++- +-..+.....+...++.+++.+|+.+++...+.+.....++++.+.+|...+...+.
T Consensus 379 lshce~itD~-------------gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~ 445 (483)
T KOG4341|consen 379 LSHCELITDE-------------GIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAIS 445 (483)
T ss_pred hhhhhhhhhh-------------hhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhH
Confidence 8888777763 112333333445566667777788888888888888888889999999999888887
Q ss_pred HHHHHHHHHHH
Q 017542 338 DLQKRIRHMII 348 (369)
Q Consensus 338 ~~~~~~~~~~~ 348 (369)
....+++.+..
T Consensus 446 ~~~~~lp~i~v 456 (483)
T KOG4341|consen 446 RFATHLPNIKV 456 (483)
T ss_pred HHHhhCcccee
Confidence 77777766544
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.40 E-value=2.2e-13 Score=134.51 Aligned_cols=257 Identities=25% Similarity=0.313 Sum_probs=159.3
Q ss_pred CCccCCCCCCCCCccEEecCCCCCccccCCccC--CeeEEecCCcc--CcccCc-cCCCCCCCCEEeCcCCccccccccc
Q 017542 8 SLRCFPQNIHFISSIKIDCYKCVNLREFPRISG--NVVELNLMCTP--IEEVPL-SIECLPNLETLEMSFCNSLKRLSTS 82 (369)
Q Consensus 8 ~l~~~p~~~~~~~L~~L~l~~~~~l~~~~~~~~--~L~~L~l~~~~--~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~ 82 (369)
++.+.|........+.+.+.++. ...++.... .|++|-+..+. +..++. .|..+|.|++||+++|.....+|..
T Consensus 512 ~~~~~~~~~~~~~~rr~s~~~~~-~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~ 590 (889)
T KOG4658|consen 512 GLSEIPQVKSWNSVRRMSLMNNK-IEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS 590 (889)
T ss_pred CccccccccchhheeEEEEeccc-hhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH
Confidence 34456666677788888888887 666665544 78888886664 555554 3677999999999998888999999
Q ss_pred ccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCC--CCCCcccCCCcc
Q 017542 83 ICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKL--GSLPESLGNLKS 160 (369)
Q Consensus 83 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~l~~ 160 (369)
++.+.+||+|+++++ ....+|..+++++.|.+|++..+.....++.....+++|++|.+...... ...-..+..+++
T Consensus 591 I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~ 669 (889)
T KOG4658|consen 591 IGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEH 669 (889)
T ss_pred HhhhhhhhcccccCC-CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccc
Confidence 999999999999985 45578999999999999999977766666777777999999988763311 111123345555
Q ss_pred hhhhccCcccCCCCCcccccCCCCc----EEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCC-CC-----CC-CCC
Q 017542 161 LERLHAGLLAIPQAPSSIVDLNKLE----TLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPP-DI-----GC-LSS 229 (369)
Q Consensus 161 L~~L~l~~~~~~~~~~~l~~~~~L~----~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~-----~~-~~~ 229 (369)
|+.+....... .+...+..+..|+ .+.+.++.....+..+..+.+|+.|.+.+|.+.+... +. .. +++
T Consensus 670 L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~ 748 (889)
T KOG4658|consen 670 LENLSITISSV-LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPN 748 (889)
T ss_pred hhhheeecchh-HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHH
Confidence 55555543332 1112222233333 2222223333444455666777777777777654211 11 00 223
Q ss_pred CCEEEccCCcCCccchhhccCCcCcEecccCCcccccC
Q 017542 230 LESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSL 267 (369)
Q Consensus 230 L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~ 267 (369)
+..+.+.++..-..+.+.--.|+|+.|.+.+|+.+.++
T Consensus 749 l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~ 786 (889)
T KOG4658|consen 749 LSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDI 786 (889)
T ss_pred HHHHHhhccccccccchhhccCcccEEEEecccccccC
Confidence 33333333322223333334566777777666655544
No 25
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.33 E-value=5.9e-13 Score=131.50 Aligned_cols=257 Identities=27% Similarity=0.364 Sum_probs=186.0
Q ss_pred ccccCCccC--CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcc-ccccc-ccccCCCCCcEEecCCCcCCccCchhh
Q 017542 32 LREFPRISG--NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNS-LKRLS-TSICKLKSLRSLDLSYCINLESFPEIL 107 (369)
Q Consensus 32 l~~~~~~~~--~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~-~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~ 107 (369)
..++|.... ..+...+.++.+..++.. ..++.|++|-+.++.. ...++ ..|..++.|++||+++|.....+|..+
T Consensus 513 ~~~~~~~~~~~~~rr~s~~~~~~~~~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I 591 (889)
T KOG4658|consen 513 LSEIPQVKSWNSVRRMSLMNNKIEHIAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI 591 (889)
T ss_pred ccccccccchhheeEEEEeccchhhccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH
Confidence 444554433 888999988888877764 3456899999998762 33333 457789999999999999999999999
Q ss_pred hccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCC---CCCcccccCCCC
Q 017542 108 EKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIP---QAPSSIVDLNKL 184 (369)
Q Consensus 108 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~---~~~~~l~~~~~L 184 (369)
+.+-+||+|++++ ..+..+|..+.++..|.+|++..+.....++.....+.+|++|.+...... .....+..+.+|
T Consensus 592 ~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L 670 (889)
T KOG4658|consen 592 GELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHL 670 (889)
T ss_pred hhhhhhhcccccC-CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccch
Confidence 9999999999995 457789999999999999999988777777666667999999998776533 122345566677
Q ss_pred cEEeecCCCCCCCCccccCCCCC----cEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccch-h-----hcc-CCcC
Q 017542 185 ETLSLFECRGLVLPPLLSGLSSL----KKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPT-S-----ISQ-LSRL 253 (369)
Q Consensus 185 ~~L~l~~~~~~~~~~~~~~~~~L----~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~-----~~~-~~~L 253 (369)
+.+.+..... .+..-+.....| +.+.+.++........+..+.+|+.|.+.++.+.++.. . ... ++++
T Consensus 671 ~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l 749 (889)
T KOG4658|consen 671 ENLSITISSV-LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNL 749 (889)
T ss_pred hhheeecchh-HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHH
Confidence 7777654443 111112222333 24444445555566667888999999999998763321 1 122 6688
Q ss_pred cEecccCCcccccCC--CCCcccceeccccccccccCCCc
Q 017542 254 RWLYLVNCVKLQSLP--ELPLLLVMLGASDCKRLQFLPEL 291 (369)
Q Consensus 254 ~~L~l~~~~~l~~~~--~~~~~L~~L~l~~c~~L~~l~~~ 291 (369)
..+.+.+|...+... .++++|+.|.+.+|+.++.....
T Consensus 750 ~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~ 789 (889)
T KOG4658|consen 750 SKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPK 789 (889)
T ss_pred HHHHhhccccccccchhhccCcccEEEEecccccccCCCH
Confidence 888888898777765 36799999999999988765443
No 26
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.18 E-value=2.7e-13 Score=117.94 Aligned_cols=298 Identities=18% Similarity=0.222 Sum_probs=197.3
Q ss_pred CccEEecCCCCCccccC-----CccCCeeEEec-CCccCcc--cCccCCCCCCCCEEeCcCCccccccc--ccccCCCCC
Q 017542 20 SSIKIDCYKCVNLREFP-----RISGNVVELNL-MCTPIEE--VPLSIECLPNLETLEMSFCNSLKRLS--TSICKLKSL 89 (369)
Q Consensus 20 ~L~~L~l~~~~~l~~~~-----~~~~~L~~L~l-~~~~~~~--l~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L 89 (369)
.|+.|.++|+...+.-+ ...+++++|++ .+.++++ ....-..|++|++|++..|..++... .....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 47888888887544322 22338888888 4555552 22223578999999999988777543 223568999
Q ss_pred cEEecCCCcCCcc--CchhhhccCccceeecccccccc--ccchhhhcCCCCCeEeecCCCCCCCCCc--ccCCCcchhh
Q 017542 90 RSLDLSYCINLES--FPEILEKMELLEEINLEEASNIK--ELPSSIENLEGLKQLKLTGCTKLGSLPE--SLGNLKSLER 163 (369)
Q Consensus 90 ~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~ 163 (369)
++|++++|..... +......++.++.+...||...+ .+...-..+..+.++++..|..+++..- .-..+..|+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 9999999976644 33455677888888777776554 1222233556677888888877665431 2245778899
Q ss_pred hccCcccCC-CC--CcccccCCCCcEEeecCCCC---CCCCccccCCCCCcEEeccCCCCcc---CCCCCCCCCCCCEEE
Q 017542 164 LHAGLLAIP-QA--PSSIVDLNKLETLSLFECRG---LVLPPLLSGLSSLKKLELGDCEIME---IPPDIGCLSSLESLN 234 (369)
Q Consensus 164 L~l~~~~~~-~~--~~~l~~~~~L~~L~l~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~L~~L~ 234 (369)
+..+++... .. ..-..++.+|+.+.+..|.. ..+...-.+++.|+.+++.+|.... +.....+++.|+++.
T Consensus 299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls 378 (483)
T KOG4341|consen 299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS 378 (483)
T ss_pred hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence 988877542 11 12234678999999999982 2222234568899999999886644 444457899999999
Q ss_pred ccCCc-CCcc-----chhhccCCcCcEecccCCcccccCCCCCcccceeccccccccccCCCchhhhHHHhHHHHHhhhc
Q 017542 235 LSGNN-IESL-----PTSISQLSRLRWLYLVNCVKLQSLPELPLLLVMLGASDCKRLQFLPELTSCLEELDASILQALSN 308 (369)
Q Consensus 235 l~~~~-l~~~-----~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~l~~l~~~~~~~l~~ 308 (369)
+++|. +++. .....+...|..+.+++|+.+++ ..|++|. .|++|+. +++.+|+.++.
T Consensus 379 lshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d-----~~Le~l~--~c~~Ler----------i~l~~~q~vtk 441 (483)
T KOG4341|consen 379 LSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITD-----ATLEHLS--ICRNLER----------IELIDCQDVTK 441 (483)
T ss_pred hhhhhhhhhhhhhhhhhccccccccceeeecCCCCchH-----HHHHHHh--hCcccce----------eeeechhhhhh
Confidence 99984 4422 33345677899999999987765 3344333 3555544 56677888888
Q ss_pred cccccccCCCCCcEEEecCccCcchh
Q 017542 309 RTGERLSKHMSPVQLIFANCLKLNES 334 (369)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~c~~l~~~ 334 (369)
.++..+..+.|..++.-...+...+.
T Consensus 442 ~~i~~~~~~lp~i~v~a~~a~~t~p~ 467 (483)
T KOG4341|consen 442 EAISRFATHLPNIKVHAYFAPVTPPG 467 (483)
T ss_pred hhhHHHHhhCccceehhhccCCCCcc
Confidence 88888887777766665555444443
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=7e-12 Score=109.87 Aligned_cols=200 Identities=25% Similarity=0.228 Sum_probs=111.8
Q ss_pred CCCCCCEEeCcCCccccccc--ccccCCCCCcEEecCCCcCCc--cCchhhhccCccceeeccccccccccch-hhhcCC
Q 017542 61 CLPNLETLEMSFCNSLKRLS--TSICKLKSLRSLDLSYCINLE--SFPEILEKMELLEEINLEEASNIKELPS-SIENLE 135 (369)
Q Consensus 61 ~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~ 135 (369)
++.+|+.+.+..+.. ...+ .....|++++.||+++|-... .+...+..+++|+.|+++.|........ .-..++
T Consensus 119 n~kkL~~IsLdn~~V-~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRV-EDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCccc-cccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 445566666655432 2222 233456666666666642211 2334455666666666665544321111 112455
Q ss_pred CCCeEeecCCCCCC-CCCcccCCCcchhhhccCccc-CCCCCcccccCCCCcEEeecCCCCCCCC--ccccCCCCCcEEe
Q 017542 136 GLKQLKLTGCTKLG-SLPESLGNLKSLERLHAGLLA-IPQAPSSIVDLNKLETLSLFECRGLVLP--PLLSGLSSLKKLE 211 (369)
Q Consensus 136 ~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~ 211 (369)
.|+.|.+++|.... ++...+..+|+|+.|++.+|. +........-+..|+.|++++|.....+ ...+.++.|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 67777777766542 222334556777777777774 2211122233556777777777755554 3456677777777
Q ss_pred ccCCCCcc--CCCC-----CCCCCCCCEEEccCCcCCccc--hhhccCCcCcEecccCC
Q 017542 212 LGDCEIME--IPPD-----IGCLSSLESLNLSGNNIESLP--TSISQLSRLRWLYLVNC 261 (369)
Q Consensus 212 l~~~~~~~--~~~~-----~~~~~~L~~L~l~~~~l~~~~--~~~~~~~~L~~L~l~~~ 261 (369)
++.|.+.+ .++. ...+++|++|++..|++.+++ ..+...++|+.|.+..+
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccc
Confidence 77777766 3332 345678888888888776555 23455667777776655
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.16 E-value=3.4e-12 Score=115.36 Aligned_cols=211 Identities=27% Similarity=0.386 Sum_probs=163.6
Q ss_pred EecCCccCcccCccCC--CCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccc
Q 017542 45 LNLMCTPIEEVPLSIE--CLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEAS 122 (369)
Q Consensus 45 L~l~~~~~~~l~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 122 (369)
|.|++-.++.+|..-. .+..-...|++.| ....+|..++.+..|+.+.++.| ....+|..+.++..|++++++.|+
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrN-R~~elp~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~Nq 132 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRN-RFSELPEEACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSNQ 132 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhcccc-ccccCchHHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccch
Confidence 4455555555554322 2333456678875 44567777788888888888884 566788888999999999999665
Q ss_pred cccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCcccc
Q 017542 123 NIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLS 202 (369)
Q Consensus 123 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 202 (369)
+..+|..++.++ |+.|.+++ +.++.+|..++...+|..|+.+.|.+..+|..+..+.+|+.|.+..|....+|+.+.
T Consensus 133 -lS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~ 209 (722)
T KOG0532|consen 133 -LSHLPDGLCDLP-LKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC 209 (722)
T ss_pred -hhcCChhhhcCc-ceeEEEec-CccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh
Confidence 455666677665 88888877 667888888888889999999999999999999999999999999999888888777
Q ss_pred CCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccchhhc---cCCcCcEecccCC
Q 017542 203 GLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSIS---QLSRLRWLYLVNC 261 (369)
Q Consensus 203 ~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~---~~~~L~~L~l~~~ 261 (369)
.+ .|..|+++.|++..+|..+..+..|++|-|.+|.+.+-|..+. ..-=.++|++.-|
T Consensus 210 ~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 210 SL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred CC-ceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 55 4889999999999999999999999999999999887776552 2233567777776
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=1.3e-11 Score=108.31 Aligned_cols=201 Identities=17% Similarity=0.158 Sum_probs=130.3
Q ss_pred CeeEEecCCccCcccCc--cCCCCCCCCEEeCcCCcccc--cccccccCCCCCcEEecCCCcCCccCc-hhhhccCccce
Q 017542 41 NVVELNLMCTPIEEVPL--SIECLPNLETLEMSFCNSLK--RLSTSICKLKSLRSLDLSYCINLESFP-EILEKMELLEE 115 (369)
Q Consensus 41 ~L~~L~l~~~~~~~l~~--~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~ 115 (369)
+|+...++++.+...+. ....|++++.||+++|-... .+......+++|+.|+++.|....-.. ..-..+++|+.
T Consensus 122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~ 201 (505)
T KOG3207|consen 122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQ 201 (505)
T ss_pred hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhhe
Confidence 67777777777765552 45677888888888764332 333445667888888888764332211 12235677888
Q ss_pred eecccccccc-ccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCC--cccccCCCCcEEeecCC
Q 017542 116 INLEEASNIK-ELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAP--SSIVDLNKLETLSLFEC 192 (369)
Q Consensus 116 L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~l~~~~~L~~L~l~~~ 192 (369)
|.+++|.... ++...+..+|+|+.|++.+|............+..|++|++++|.+...+ ...+.++.|+.|+++.+
T Consensus 202 L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t 281 (505)
T KOG3207|consen 202 LVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST 281 (505)
T ss_pred EEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcccc
Confidence 8888776543 34444567788888888876533322223345667888888888776554 34566778888888877
Q ss_pred CCCCC--Ccc-----ccCCCCCcEEeccCCCCccCC--CCCCCCCCCCEEEccCCcCC
Q 017542 193 RGLVL--PPL-----LSGLSSLKKLELGDCEIMEIP--PDIGCLSSLESLNLSGNNIE 241 (369)
Q Consensus 193 ~~~~~--~~~-----~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~l~ 241 (369)
...++ |+. ...+++|+.|++..|++.+++ ..+..+++|+.|.+..|.++
T Consensus 282 gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 282 GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred CcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 74433 222 356788999999999887643 33566778888887777665
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.15 E-value=7.8e-11 Score=108.77 Aligned_cols=193 Identities=34% Similarity=0.480 Sum_probs=128.0
Q ss_pred EEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccC-ccceeeccccccccccchhhhcCCCCCeEeecCC
Q 017542 67 TLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKME-LLEEINLEEASNIKELPSSIENLEGLKQLKLTGC 145 (369)
Q Consensus 67 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 145 (369)
.++...+........ +..+..++.|++.++ ....++.....++ +|+.|++++|. +..++..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~~~-~~~~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNISE-LLELTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCchh-hhcccceeEEecCCc-ccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCc
Confidence 455555443233222 344567777777774 3445555555664 77778777544 4444455667777888887774
Q ss_pred CCCCCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCCC
Q 017542 146 TKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIG 225 (369)
Q Consensus 146 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 225 (369)
+ +..++...+..+.|+.+++++|.+..+|........|+++.+++|.....+..+.++.++..+.+.++++..++..+.
T Consensus 174 ~-l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~ 252 (394)
T COG4886 174 D-LSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIG 252 (394)
T ss_pred h-hhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhc
Confidence 3 455554444677778888888887777766556666778888777655555556667777777777777776666677
Q ss_pred CCCCCCEEEccCCcCCccchhhccCCcCcEecccCCccc
Q 017542 226 CLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKL 264 (369)
Q Consensus 226 ~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~l 264 (369)
.++++++|++++|.+++++. ++...+++.|+++++...
T Consensus 253 ~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 253 NLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred cccccceecccccccccccc-ccccCccCEEeccCcccc
Confidence 77778888888888777775 777778888888777433
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.13 E-value=2.5e-11 Score=96.88 Aligned_cols=129 Identities=28% Similarity=0.291 Sum_probs=44.3
Q ss_pred cCCCcchhhhccCcccCCCCCcccc-cCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCC-CCCCCCCE
Q 017542 155 LGNLKSLERLHAGLLAIPQAPSSIV-DLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDI-GCLSSLES 232 (369)
Q Consensus 155 ~~~l~~L~~L~l~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~ 232 (369)
+.+..++++|++.++.+..+. .+. .+.+|+.|++++|....+.. +..+++|+.|++++|.+.++...+ ..+|+|++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~-l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEG-LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--TT-----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred ccccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccC-ccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 344556777777777777653 344 46777888888887766653 566778888888888887764433 34678888
Q ss_pred EEccCCcCCccc--hhhccCCcCcEecccCCcccccCCCCCcccceeccccccccccCCC
Q 017542 233 LNLSGNNIESLP--TSISQLSRLRWLYLVNCVKLQSLPELPLLLVMLGASDCKRLQFLPE 290 (369)
Q Consensus 233 L~l~~~~l~~~~--~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~c~~L~~l~~ 290 (369)
|++++|++.++. ..++.+|+|++|++.+|+--.. +..+..-+..+|+|+.++.
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-----~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-----KNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-----TTHHHHHHHH-TT-SEETT
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-----hhHHHHHHHHcChhheeCC
Confidence 888888777443 3556788888888888853221 2344444555666665553
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.12 E-value=3.4e-12 Score=108.80 Aligned_cols=221 Identities=21% Similarity=0.220 Sum_probs=142.3
Q ss_pred CeeEEecCCccCc-----ccCccCCCCCCCCEEeCcCCcc---ccccc-------ccccCCCCCcEEecCCCcCCccC--
Q 017542 41 NVVELNLMCTPIE-----EVPLSIECLPNLETLEMSFCNS---LKRLS-------TSICKLKSLRSLDLSYCINLESF-- 103 (369)
Q Consensus 41 ~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~~~~---~~~~~-------~~~~~~~~L~~L~l~~~~~~~~~-- 103 (369)
.++++++++|.+. .+-..+.+.+.|+..++++-.. ...+| +.+-.+++|++|+||.|-.....
T Consensus 31 s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~ 110 (382)
T KOG1909|consen 31 SLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIR 110 (382)
T ss_pred ceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchH
Confidence 6777777777664 2333455566777777765211 11222 22344667888888876444332
Q ss_pred --chhhhccCccceeeccccccccccch-------------hhhcCCCCCeEeecCCCCCCCCC-----cccCCCcchhh
Q 017542 104 --PEILEKMELLEEINLEEASNIKELPS-------------SIENLEGLKQLKLTGCTKLGSLP-----ESLGNLKSLER 163 (369)
Q Consensus 104 --~~~~~~l~~L~~L~l~~~~~~~~~~~-------------~~~~l~~L~~L~l~~~~~~~~~~-----~~~~~l~~L~~ 163 (369)
.+.+.++..|++|.+.+|........ ....-+.|+.+...+| .+.+.+ ..+...+.|+.
T Consensus 111 ~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~ga~~~A~~~~~~~~lee 189 (382)
T KOG1909|consen 111 GLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGGATALAEAFQSHPTLEE 189 (382)
T ss_pred HHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccccccHHHHHHHHHhccccce
Confidence 24456778888888875543322111 1234567888888774 343322 34566788888
Q ss_pred hccCcccCC--CC---CcccccCCCCcEEeecCCCCC-----CCCccccCCCCCcEEeccCCCCcc-----CCCC-CCCC
Q 017542 164 LHAGLLAIP--QA---PSSIVDLNKLETLSLFECRGL-----VLPPLLSGLSSLKKLELGDCEIME-----IPPD-IGCL 227 (369)
Q Consensus 164 L~l~~~~~~--~~---~~~l~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~-~~~~ 227 (369)
+.+..|.+. ++ ...+..+++|+.|++..|..+ .+...++.+++|+.|+++.|.+.. +... -...
T Consensus 190 vr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~ 269 (382)
T KOG1909|consen 190 VRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESA 269 (382)
T ss_pred EEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccC
Confidence 888888765 22 245678899999999988743 234467778899999999998866 1111 2347
Q ss_pred CCCCEEEccCCcCC-----ccchhhccCCcCcEecccCCc
Q 017542 228 SSLESLNLSGNNIE-----SLPTSISQLSRLRWLYLVNCV 262 (369)
Q Consensus 228 ~~L~~L~l~~~~l~-----~~~~~~~~~~~L~~L~l~~~~ 262 (369)
|+|+++.+.+|.++ .+...+...|.|+.|++++|.
T Consensus 270 p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 270 PSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred CCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 89999999999887 223345567899999999984
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.08 E-value=2.8e-10 Score=105.03 Aligned_cols=195 Identities=30% Similarity=0.446 Sum_probs=142.9
Q ss_pred EecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCC-CCcEEecCCCcCCccCchhhhccCccceeecccccc
Q 017542 45 LNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLK-SLRSLDLSYCINLESFPEILEKMELLEEINLEEASN 123 (369)
Q Consensus 45 L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 123 (369)
+....+.+..-...+...+.++.|++.++ ....++....... +|+.|+++++. ...++..++.+++|+.|++++|+
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~- 174 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFND- 174 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCc-ccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCch-
Confidence 55555555322222444567888888874 4455555455553 88888888854 44555667888889999888655
Q ss_pred ccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCccccC
Q 017542 124 IKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSG 203 (369)
Q Consensus 124 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 203 (369)
+..++......++|+.|++++ +.+..+|........|+++.+++|.....+..+....++..+.+.+++...++..++.
T Consensus 175 l~~l~~~~~~~~~L~~L~ls~-N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~ 253 (394)
T COG4886 175 LSDLPKLLSNLSNLNNLDLSG-NKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGN 253 (394)
T ss_pred hhhhhhhhhhhhhhhheeccC-CccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhcc
Confidence 445555555778889999988 4566666655566779999999987666667778888888888888887776777888
Q ss_pred CCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccc
Q 017542 204 LSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLP 244 (369)
Q Consensus 204 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 244 (369)
++.++.|++++|.+..++. ++...++++|+++++.+..++
T Consensus 254 l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 254 LSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred ccccceecccccccccccc-ccccCccCEEeccCccccccc
Confidence 8889999999999998776 788889999999999877554
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.06 E-value=4.4e-11 Score=100.24 Aligned_cols=123 Identities=25% Similarity=0.193 Sum_probs=75.3
Q ss_pred CcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccC
Q 017542 158 LKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSG 237 (369)
Q Consensus 158 l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 237 (369)
.+.|+++++++|.++.+.+++.-.+.++.|++++|....+.. +..+++|+.|++++|.+..+..|-..+-+.++|.+++
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence 456667777777777666666666777777777776555444 5566677777777776666544444455666777777
Q ss_pred CcCCccchhhccCCcCcEecccCCcccccCCC-----CCcccceecccccc
Q 017542 238 NNIESLPTSISQLSRLRWLYLVNCVKLQSLPE-----LPLLLVMLGASDCK 283 (369)
Q Consensus 238 ~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-----~~~~L~~L~l~~c~ 283 (369)
|.+.++. ++..+-+|..||+++| ++..+.+ ..|.|+.+.+.+.|
T Consensus 362 N~iE~LS-GL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 362 NKIETLS-GLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhHhhhh-hhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCC
Confidence 7666554 4556666777777766 3332221 22445555555544
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.04 E-value=1.3e-10 Score=92.73 Aligned_cols=127 Identities=27% Similarity=0.345 Sum_probs=52.1
Q ss_pred hcCCCCCeEeecCCCCCCCCCcccC-CCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCccc-cCCCCCcE
Q 017542 132 ENLEGLKQLKLTGCTKLGSLPESLG-NLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLL-SGLSSLKK 209 (369)
Q Consensus 132 ~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~ 209 (369)
.+..++++|++.++. +..+. .++ .+.+|+.|++++|.+..+ +.+..+++|+.|++++|....+.+.+ ..+++|+.
T Consensus 16 ~n~~~~~~L~L~~n~-I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQ-ISTIE-NLGATLDKLEVLDLSNNQITKL-EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred ccccccccccccccc-ccccc-chhhhhcCCCEEECCCCCCccc-cCccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 344567777777744 33332 344 467788888888888876 35777888999999999887776544 35789999
Q ss_pred EeccCCCCccCCC--CCCCCCCCCEEEccCCcCCccc----hhhccCCcCcEecccCC
Q 017542 210 LELGDCEIMEIPP--DIGCLSSLESLNLSGNNIESLP----TSISQLSRLRWLYLVNC 261 (369)
Q Consensus 210 L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~----~~~~~~~~L~~L~l~~~ 261 (369)
|.+++|++.++.. .+..+++|++|++.+|.++.-+ ..+..+|+|+.||-...
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 9999999887433 3667899999999999887443 34578899999987544
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.03 E-value=1.9e-11 Score=102.44 Aligned_cols=216 Identities=23% Similarity=0.249 Sum_probs=146.4
Q ss_pred CeeEEecCCcc--Cc-------ccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccC
Q 017542 41 NVVELNLMCTP--IE-------EVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKME 111 (369)
Q Consensus 41 ~L~~L~l~~~~--~~-------~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 111 (369)
+|+.|-++... +. .+|..+..+++|+.+.++.|...... .....-+.|+.+...+. .....+. +--.+
T Consensus 183 ~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~-~~~~~kptl~t~~v~~s-~~~~~~~-l~pe~ 259 (490)
T KOG1259|consen 183 QLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIV-DIELLKPTLQTICVHNT-TIQDVPS-LLPET 259 (490)
T ss_pred heeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhhee-ceeecCchhheeeeecc-ccccccc-ccchh
Confidence 67777664332 11 23334556678888888887543322 21222367777776653 2222221 11112
Q ss_pred ccceeecccccc-ccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEEeec
Q 017542 112 LLEEINLEEASN-IKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLF 190 (369)
Q Consensus 112 ~L~~L~l~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~ 190 (369)
.+.......-.. .+.....+...+.|+++++++ +.++.+.+++.-.++++.|++++|.+..+. .+..+++|+.|+++
T Consensus 260 ~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~-N~I~~iDESvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS 337 (490)
T KOG1259|consen 260 ILADPSGSEPSTSNGSALVSADTWQELTELDLSG-NLITQIDESVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLS 337 (490)
T ss_pred hhcCccCCCCCccCCceEEecchHhhhhhccccc-cchhhhhhhhhhccceeEEeccccceeeeh-hhhhcccceEeecc
Confidence 222221111000 011112233456799999999 567777788888999999999999998774 48889999999999
Q ss_pred CCCCCCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccc--hhhccCCcCcEecccCCc
Q 017542 191 ECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLP--TSISQLSRLRWLYLVNCV 262 (369)
Q Consensus 191 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~~L~~L~l~~~~ 262 (369)
+|....+..+-.++-+++.|.+++|.+.++. .+..+-+|..||+++|+|..+. ..++++|.|+++.+.+|+
T Consensus 338 ~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 338 GNLLAECVGWHLKLGNIKTLKLAQNKIETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred cchhHhhhhhHhhhcCEeeeehhhhhHhhhh-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 9998888877778889999999999988753 3677789999999999998554 568999999999999996
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.01 E-value=1e-11 Score=112.33 Aligned_cols=191 Identities=29% Similarity=0.380 Sum_probs=160.4
Q ss_pred CCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhc
Q 017542 86 LKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLH 165 (369)
Q Consensus 86 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 165 (369)
+..-...+++.| ....+|..+..+..|+.+.++.| .+..+|..++++..|..++++.| .+..+|..+..++ |+.|-
T Consensus 74 ltdt~~aDlsrN-R~~elp~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRN-RFSELPEEACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhcccc-ccccCchHHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEE
Confidence 334455677874 56678988999999999988854 46678888999999999999995 4667777777776 89999
Q ss_pred cCcccCCCCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccch
Q 017542 166 AGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPT 245 (369)
Q Consensus 166 l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 245 (369)
+++|.++.+|+.++....|..|+.+.|...++|..++++.+|+.|.+..|++..+|..+..+ .|..||+++|++..+|.
T Consensus 150 ~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~iPv 228 (722)
T KOG0532|consen 150 VSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISYLPV 228 (722)
T ss_pred EecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceeecch
Confidence 99999999999999999999999999999999999999999999999999999999888855 68999999999999999
Q ss_pred hhccCCcCcEecccCCcccccCCCC------Ccccceeccccc
Q 017542 246 SISQLSRLRWLYLVNCVKLQSLPEL------PLLLVMLGASDC 282 (369)
Q Consensus 246 ~~~~~~~L~~L~l~~~~~l~~~~~~------~~~L~~L~l~~c 282 (369)
.+..+..|++|-|.+|+ +++-|.. -.=.++|++..|
T Consensus 229 ~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 229 DFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence 99999999999999885 5544321 122577777777
No 38
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.94 E-value=4.7e-10 Score=95.95 Aligned_cols=103 Identities=22% Similarity=0.222 Sum_probs=64.6
Q ss_pred ccCCCCcEEeecCCCCCCCC-----ccccCCCCCcEEeccCCCCcc-----CCCCCCCCCCCCEEEccCCcCC-----cc
Q 017542 179 VDLNKLETLSLFECRGLVLP-----PLLSGLSSLKKLELGDCEIME-----IPPDIGCLSSLESLNLSGNNIE-----SL 243 (369)
Q Consensus 179 ~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~l~-----~~ 243 (369)
.+.++|+.+..++|+...-+ ..+...+.|+.+.+..|.+.. +...+..+++|+.||+.+|.++ .+
T Consensus 154 ~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L 233 (382)
T KOG1909|consen 154 ASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL 233 (382)
T ss_pred CCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH
Confidence 34567777777777743322 345566777788777777655 2233567778888888887766 33
Q ss_pred chhhccCCcCcEecccCCccccc---------CCCCCcccceeccccc
Q 017542 244 PTSISQLSRLRWLYLVNCVKLQS---------LPELPLLLVMLGASDC 282 (369)
Q Consensus 244 ~~~~~~~~~L~~L~l~~~~~l~~---------~~~~~~~L~~L~l~~c 282 (369)
...++.+++|++|++++| .+.+ +....++|+.+.+.+|
T Consensus 234 akaL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gN 280 (382)
T KOG1909|consen 234 AKALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGN 280 (382)
T ss_pred HHHhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcc
Confidence 455566777888888777 3332 1223456666666555
No 39
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=9.2e-11 Score=98.18 Aligned_cols=173 Identities=17% Similarity=0.206 Sum_probs=96.4
Q ss_pred ccceeecccccccc-ccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCccc-CCCC--CcccccCCCCcEE
Q 017542 112 LLEEINLEEASNIK-ELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLA-IPQA--PSSIVDLNKLETL 187 (369)
Q Consensus 112 ~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~--~~~l~~~~~L~~L 187 (369)
.|+++|++...... .+-..+..|.+|+.|.+.+...-..+...+.+-.+|+.++++.+. ++.. .-.+.+|+.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 35556665322211 223334455556666655544333333344455556666655543 2211 1234556667777
Q ss_pred eecCCCCCCC--Cccc-cCCCCCcEEeccCCCCc----cCCCCCCCCCCCCEEEccCC-cCC-ccchhhccCCcCcEecc
Q 017542 188 SLFECRGLVL--PPLL-SGLSSLKKLELGDCEIM----EIPPDIGCLSSLESLNLSGN-NIE-SLPTSISQLSRLRWLYL 258 (369)
Q Consensus 188 ~l~~~~~~~~--~~~~-~~~~~L~~L~l~~~~~~----~~~~~~~~~~~L~~L~l~~~-~l~-~~~~~~~~~~~L~~L~l 258 (369)
++++|.+..- .... .--++|+.|+++|+.-. .+......+|+|.+|||++| .++ +....+.+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 7777663211 1111 11256777777776422 12223467889999999987 555 44566778899999999
Q ss_pred cCCcccccC--C--CCCcccceeccccccc
Q 017542 259 VNCVKLQSL--P--ELPLLLVMLGASDCKR 284 (369)
Q Consensus 259 ~~~~~l~~~--~--~~~~~L~~L~l~~c~~ 284 (369)
+.|..+..- - ...+++.+|++.+|-.
T Consensus 346 sRCY~i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 346 SRCYDIIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred hhhcCCChHHeeeeccCcceEEEEeccccC
Confidence 999755321 1 1337788888888753
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=5.6e-11 Score=99.45 Aligned_cols=175 Identities=18% Similarity=0.153 Sum_probs=91.2
Q ss_pred CCCEEeCcCCcccc-cccccccCCCCCcEEecCCCcCCccCchhhhccCccceeecccccccccc--chhhhcCCCCCeE
Q 017542 64 NLETLEMSFCNSLK-RLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKEL--PSSIENLEGLKQL 140 (369)
Q Consensus 64 ~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L 140 (369)
+|+++|++...... .+...++.|.+|+.|.+.+....+.+...+..-.+|+.++++.|..++.. .-.+.+|+.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 35555555433221 22233444555555555554444444444555555555555555544422 1234455555555
Q ss_pred eecCCCCCCCCCc-ccCC-CcchhhhccCcccCC----CCCcccccCCCCcEEeecCCCCC--CCCccccCCCCCcEEec
Q 017542 141 KLTGCTKLGSLPE-SLGN-LKSLERLHAGLLAIP----QAPSSIVDLNKLETLSLFECRGL--VLPPLLSGLSSLKKLEL 212 (369)
Q Consensus 141 ~l~~~~~~~~~~~-~~~~-l~~L~~L~l~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l 212 (369)
++++|......-. .+.+ -++|..|+++|+.-. .+.--...+++|.+||+++|... .....+.+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 5555543322110 0111 134555665554311 12122345778888888877621 22234667788888888
Q ss_pred cCCCCcc--CCCCCCCCCCCCEEEccCC
Q 017542 213 GDCEIME--IPPDIGCLSSLESLNLSGN 238 (369)
Q Consensus 213 ~~~~~~~--~~~~~~~~~~L~~L~l~~~ 238 (369)
+.|.... ..-.+...|+|.+|++.++
T Consensus 346 sRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 346 SRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhcCCChHHeeeeccCcceEEEEeccc
Confidence 8886543 2223667788888888886
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.67 E-value=7.7e-08 Score=93.39 Aligned_cols=106 Identities=25% Similarity=0.288 Sum_probs=61.9
Q ss_pred CCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecC
Q 017542 65 LETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTG 144 (369)
Q Consensus 65 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 144 (369)
++.|+|++|...+.+|..+..+++|+.|++++|.....+|..++.+++|+.|++++|.....+|..+..+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 55566666555555565566666666666666655555666666666666666666555555666666666666666666
Q ss_pred CCCCCCCCcccCCC-cchhhhccCccc
Q 017542 145 CTKLGSLPESLGNL-KSLERLHAGLLA 170 (369)
Q Consensus 145 ~~~~~~~~~~~~~l-~~L~~L~l~~~~ 170 (369)
|...+.+|..+... .++..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 65555555544332 233444555443
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.62 E-value=7.8e-09 Score=95.78 Aligned_cols=171 Identities=26% Similarity=0.273 Sum_probs=76.0
Q ss_pred CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccc
Q 017542 41 NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEE 120 (369)
Q Consensus 41 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 120 (369)
+|+.+++..|.+..+...+..+++|++|++++|... .+.. +..+..|+.|++++|.... + ..+..++.|+.+++++
T Consensus 96 ~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~-~i~~-l~~l~~L~~L~l~~N~i~~-~-~~~~~l~~L~~l~l~~ 171 (414)
T KOG0531|consen 96 SLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKIT-KLEG-LSTLTLLKELNLSGNLISD-I-SGLESLKSLKLLDLSY 171 (414)
T ss_pred ceeeeeccccchhhcccchhhhhcchheeccccccc-cccc-hhhccchhhheeccCcchh-c-cCCccchhhhcccCCc
Confidence 555555555555555443455555666666554322 2222 3444455555555543322 1 1233355555555555
Q ss_pred cccccccc-hhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcccccCCC--CcEEeecCCCCCCC
Q 017542 121 ASNIKELP-SSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNK--LETLSLFECRGLVL 197 (369)
Q Consensus 121 ~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~--L~~L~l~~~~~~~~ 197 (369)
|.....-+ . ...+.+++.+.+.++.... + ..+..+..+..+++..+.+..+. .+..... |+.+++.++.....
T Consensus 172 n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~-i-~~~~~~~~l~~~~l~~n~i~~~~-~l~~~~~~~L~~l~l~~n~i~~~ 247 (414)
T KOG0531|consen 172 NRIVDIENDE-LSELISLEELDLGGNSIRE-I-EGLDLLKKLVLLSLLDNKISKLE-GLNELVMLHLRELYLSGNRISRS 247 (414)
T ss_pred chhhhhhhhh-hhhccchHHHhccCCchhc-c-cchHHHHHHHHhhcccccceecc-CcccchhHHHHHHhcccCccccc
Confidence 44333221 1 2344555555555432211 1 12233333334444444443321 1111222 55555555554444
Q ss_pred CccccCCCCCcEEeccCCCCcc
Q 017542 198 PPLLSGLSSLKKLELGDCEIME 219 (369)
Q Consensus 198 ~~~~~~~~~L~~L~l~~~~~~~ 219 (369)
+..+..+..+..+++..+.+..
T Consensus 248 ~~~~~~~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 248 PEGLENLKNLPVLDLSSNRISN 269 (414)
T ss_pred cccccccccccccchhhccccc
Confidence 3334445555555555555444
No 43
>PLN03150 hypothetical protein; Provisional
Probab=98.51 E-value=2.3e-07 Score=90.10 Aligned_cols=106 Identities=25% Similarity=0.320 Sum_probs=93.1
Q ss_pred CCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccC
Q 017542 88 SLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAG 167 (369)
Q Consensus 88 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 167 (369)
.++.|+|++|.....+|..+..+++|+.|++++|...+.+|..+..+++|+.|++++|...+.+|..++.+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999988888899999999999999999988877899899999999999999998888899999999999999999
Q ss_pred cccCC-CCCccccc-CCCCcEEeecCCC
Q 017542 168 LLAIP-QAPSSIVD-LNKLETLSLFECR 193 (369)
Q Consensus 168 ~~~~~-~~~~~l~~-~~~L~~L~l~~~~ 193 (369)
+|.+. .+|..+.. ..++..+++.+|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCc
Confidence 99987 66766654 3466788888886
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.47 E-value=2.5e-09 Score=99.78 Aligned_cols=124 Identities=26% Similarity=0.209 Sum_probs=93.7
Q ss_pred CCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCC
Q 017542 136 GLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDC 215 (369)
Q Consensus 136 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 215 (369)
.|...+.++ +.+..+...+.-++.++.|++++|.+.++. .+..+++|++||++.|....+|..-..--+|..|.+++|
T Consensus 165 ~L~~a~fsy-N~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN 242 (1096)
T KOG1859|consen 165 KLATASFSY-NRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNN 242 (1096)
T ss_pred hHhhhhcch-hhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeeccc
Confidence 455555555 445556666777888999999999988774 778889999999999998877763222234999999999
Q ss_pred CCccCCCCCCCCCCCCEEEccCCcCCccc--hhhccCCcCcEecccCCc
Q 017542 216 EIMEIPPDIGCLSSLESLNLSGNNIESLP--TSISQLSRLRWLYLVNCV 262 (369)
Q Consensus 216 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~~L~~L~l~~~~ 262 (369)
.++++. .+.++++|+.||++.|-+.... ..+..+..|+.|.+.||+
T Consensus 243 ~l~tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 243 ALTTLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred HHHhhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 888864 3677889999999999777443 345677788888888886
No 45
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.44 E-value=1.7e-07 Score=61.40 Aligned_cols=57 Identities=39% Similarity=0.477 Sum_probs=28.7
Q ss_pred CeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCC
Q 017542 41 NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYC 97 (369)
Q Consensus 41 ~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 97 (369)
+|++|++++|.++.++. .+..+++|++|++++|.....-+..|.++++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 34555555555555543 3445555555555554443333334455555555555554
No 46
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.43 E-value=1.8e-06 Score=77.60 Aligned_cols=136 Identities=30% Similarity=0.425 Sum_probs=78.6
Q ss_pred cCCCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhh
Q 017542 84 CKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLER 163 (369)
Q Consensus 84 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 163 (369)
..+.+++.|++++| .+..+|. --.+|++|.+++|..+..+|..+ .++|++|.+++|..+..+|. +|+.
T Consensus 49 ~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~ 116 (426)
T PRK15386 49 EEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRS 116 (426)
T ss_pred HHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccce
Confidence 34678888888887 4555552 23458888888777776666544 25788888888766655553 3455
Q ss_pred hccCcccCCCCCcccccCCCCcEEeecCCC-C--CCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCC
Q 017542 164 LHAGLLAIPQAPSSIVDLNKLETLSLFECR-G--LVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGN 238 (369)
Q Consensus 164 L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~-~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 238 (369)
|++..+....++. -+++|+.|.+.++. . ..++.. -.++|+.|.+++|....+|..+ ..+|+.|.++.+
T Consensus 117 L~L~~n~~~~L~~---LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~LP~~L--P~SLk~L~ls~n 187 (426)
T PRK15386 117 LEIKGSATDSIKN---VPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIILPEKL--PESLQSITLHIE 187 (426)
T ss_pred EEeCCCCCccccc---CcchHhheeccccccccccccccc--cCCcccEEEecCCCcccCcccc--cccCcEEEeccc
Confidence 5555444322211 12355666664332 1 111111 1257788888877765544332 257778877765
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.42 E-value=4.3e-08 Score=90.91 Aligned_cols=212 Identities=30% Similarity=0.340 Sum_probs=131.3
Q ss_pred CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccc
Q 017542 41 NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEE 120 (369)
Q Consensus 41 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 120 (369)
.++.++++.+.+..+-..+..+++|+.|++.+|... .+...+..+++|++|++++|.+... ..+..++.|+.|++.+
T Consensus 73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSG 149 (414)
T ss_pred hHHhhccchhhhhhhhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccc--cchhhccchhhheecc
Confidence 666667777777765455777888888888885443 3333356688888888888655433 2345666788888887
Q ss_pred cccccccchhhhcCCCCCeEeecCCCCCCCCCcc-cCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCc
Q 017542 121 ASNIKELPSSIENLEGLKQLKLTGCTKLGSLPES-LGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPP 199 (369)
Q Consensus 121 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 199 (369)
|..... ..+..++.|+.+++++|..... ... ...+.+++.+.+.+|.+..+ ..+.....+..+++..+....+..
T Consensus 150 N~i~~~--~~~~~l~~L~~l~l~~n~i~~i-e~~~~~~~~~l~~l~l~~n~i~~i-~~~~~~~~l~~~~l~~n~i~~~~~ 225 (414)
T KOG0531|consen 150 NLISDI--SGLESLKSLKLLDLSYNRIVDI-ENDELSELISLEELDLGGNSIREI-EGLDLLKKLVLLSLLDNKISKLEG 225 (414)
T ss_pred Ccchhc--cCCccchhhhcccCCcchhhhh-hhhhhhhccchHHHhccCCchhcc-cchHHHHHHHHhhcccccceeccC
Confidence 765432 1233477888888888554332 221 36677888888888877654 233334445555666665443332
Q ss_pred cccCCC--CCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccchhhccCCcCcEecccCC
Q 017542 200 LLSGLS--SLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNC 261 (369)
Q Consensus 200 ~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~ 261 (369)
+.... +|+.+.++++++...+..+..+..+..+++.++.+..+. .+...+.+..+....+
T Consensus 226 -l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~-~~~~~~~~~~~~~~~~ 287 (414)
T KOG0531|consen 226 -LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLE-GLERLPKLSELWLNDN 287 (414)
T ss_pred -cccchhHHHHHHhcccCccccccccccccccccccchhhccccccc-cccccchHHHhccCcc
Confidence 11222 278888888888776555667778888888888766443 1223334444444443
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.38 E-value=3.1e-07 Score=77.45 Aligned_cols=226 Identities=21% Similarity=0.175 Sum_probs=141.2
Q ss_pred CCCCCEEeCcCCcccc--cccccccCCCCCcEEecCCCcCCc--cCchhhhccCccceeeccccccccccchhhhcCCCC
Q 017542 62 LPNLETLEMSFCNSLK--RLSTSICKLKSLRSLDLSYCINLE--SFPEILEKMELLEEINLEEASNIKELPSSIENLEGL 137 (369)
Q Consensus 62 ~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 137 (369)
...++.+.+.+|..-+ ++...-..+..++.+++.+|.+.. ++...+.++|.|+.|+++.|+....+...-....+|
T Consensus 44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl 123 (418)
T KOG2982|consen 44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNL 123 (418)
T ss_pred ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccce
Confidence 3345556666654322 222222457889999999976543 244567889999999999665444332111245689
Q ss_pred CeEeecCCCCCC-CCCcccCCCcchhhhccCcccCCCC---CcccccC-CCCcEEeecCCCCCC---CCccccCCCCCcE
Q 017542 138 KQLKLTGCTKLG-SLPESLGNLKSLERLHAGLLAIPQA---PSSIVDL-NKLETLSLFECRGLV---LPPLLSGLSSLKK 209 (369)
Q Consensus 138 ~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~---~~~l~~~-~~L~~L~l~~~~~~~---~~~~~~~~~~L~~ 209 (369)
+.|.+.+...-. .....+..++.+++++++.|....+ ....... +.++++....|.... .-.....+|++..
T Consensus 124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~s 203 (418)
T KOG2982|consen 124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNS 203 (418)
T ss_pred EEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchh
Confidence 999988754322 2233467788899998888854421 1112222 356666666665211 1112234688899
Q ss_pred EeccCCCCccC--CCCCCCCCCCCEEEccCCcCCccc--hhhccCCcCcEecccCCcccccCCCCCcccceecccccccc
Q 017542 210 LELGDCEIMEI--PPDIGCLSSLESLNLSGNNIESLP--TSISQLSRLRWLYLVNCVKLQSLPELPLLLVMLGASDCKRL 285 (369)
Q Consensus 210 L~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~c~~L 285 (369)
+.+..|++.+. ......+|.+.-|+++.+++.++. +.+.+++.|+.|.+++++.+..+.. ..=+.|-|...+++
T Consensus 204 v~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~--~err~llIaRL~~v 281 (418)
T KOG2982|consen 204 VFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG--GERRFLLIARLTKV 281 (418)
T ss_pred eeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccC--CcceEEEEeeccce
Confidence 99999988773 334566788889999999988554 5688999999999999987776543 22234444555555
Q ss_pred ccCC
Q 017542 286 QFLP 289 (369)
Q Consensus 286 ~~l~ 289 (369)
+.+-
T Consensus 282 ~vLN 285 (418)
T KOG2982|consen 282 QVLN 285 (418)
T ss_pred EEec
Confidence 5443
No 49
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.37 E-value=4.1e-07 Score=59.58 Aligned_cols=58 Identities=26% Similarity=0.293 Sum_probs=29.1
Q ss_pred CCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeecccc
Q 017542 64 NLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEA 121 (369)
Q Consensus 64 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 121 (369)
+|++|++++|.....-+..|.++++|++|++++|......+..+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 4555555554332222234455555555555555444334445555555555555544
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.24 E-value=2.9e-08 Score=92.96 Aligned_cols=190 Identities=22% Similarity=0.184 Sum_probs=122.9
Q ss_pred CCCCcEEecCCCcCCccC-chhhhccCccceeeccccccccccchhhhcC-CCCCeEee-----------cCCCCCCCCC
Q 017542 86 LKSLRSLDLSYCINLESF-PEILEKMELLEEINLEEASNIKELPSSIENL-EGLKQLKL-----------TGCTKLGSLP 152 (369)
Q Consensus 86 ~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l-----------~~~~~~~~~~ 152 (369)
+++++.|.+-........ |-.+..+..|++|.+.+|..... ..+..+ ..|++|.= +.| .+++.
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~Sl~Al~~v~asc--ggd~~ 158 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHNSLDALRHVFASC--GGDIS 158 (1096)
T ss_pred HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhccHHHHHHHHHHh--ccccc
Confidence 556666666553333222 55566778888888888765431 011000 12222211 111 11111
Q ss_pred cccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCE
Q 017542 153 ESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLES 232 (369)
Q Consensus 153 ~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 232 (369)
.+ .....|...+.+.|.+..+.+.+.-++.+++|++++|+...+. .+..+++|++|+++.|.+..+|..-..--.|..
T Consensus 159 ns-~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~ 236 (1096)
T KOG1859|consen 159 NS-PVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQL 236 (1096)
T ss_pred cc-hhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhhee
Confidence 10 1234677778888888877778888899999999999977666 578899999999999999887654322234999
Q ss_pred EEccCCcCCccchhhccCCcCcEecccCCcccccCCC-----CCcccceecccccc
Q 017542 233 LNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPE-----LPLLLVMLGASDCK 283 (369)
Q Consensus 233 L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-----~~~~L~~L~l~~c~ 283 (369)
|.+.+|.++.+. .+.++++|+.||++.| -+....+ ...+|..|.+.|.|
T Consensus 237 L~lrnN~l~tL~-gie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 237 LNLRNNALTTLR-GIENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred eeecccHHHhhh-hHHhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 999999988776 5778999999999998 3433332 12456667776654
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=1.9e-07 Score=78.68 Aligned_cols=81 Identities=25% Similarity=0.262 Sum_probs=45.8
Q ss_pred CeeEEecCCccCcc---cCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCc-cCchhhhccCcccee
Q 017542 41 NVVELNLMCTPIEE---VPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLE-SFPEILEKMELLEEI 116 (369)
Q Consensus 41 ~L~~L~l~~~~~~~---l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L 116 (369)
.++.+++.+|.+.+ +-..+.++|+|++|+++.|.....+..--....+|+.|.+.+..... ........+|.+++|
T Consensus 72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtel 151 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTEL 151 (418)
T ss_pred hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhh
Confidence 66777777777753 33345677777777777765443332211235577777776643221 123445566666666
Q ss_pred ecccc
Q 017542 117 NLEEA 121 (369)
Q Consensus 117 ~l~~~ 121 (369)
.++.|
T Consensus 152 HmS~N 156 (418)
T KOG2982|consen 152 HMSDN 156 (418)
T ss_pred hhccc
Confidence 66655
No 52
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.17 E-value=9.2e-06 Score=73.20 Aligned_cols=31 Identities=39% Similarity=0.588 Sum_probs=13.0
Q ss_pred CCCcEEeecCCCCCCCCccccCCCCCcEEeccC
Q 017542 182 NKLETLSLFECRGLVLPPLLSGLSSLKKLELGD 214 (369)
Q Consensus 182 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 214 (369)
++|+.|++++|....+|..+. .+|+.|.++.
T Consensus 156 sSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~ 186 (426)
T PRK15386 156 PSLKTLSLTGCSNIILPEKLP--ESLQSITLHI 186 (426)
T ss_pred CcccEEEecCCCcccCccccc--ccCcEEEecc
Confidence 345555555444333332221 3445555443
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.15 E-value=2.5e-06 Score=51.30 Aligned_cols=39 Identities=38% Similarity=0.573 Sum_probs=25.4
Q ss_pred CCCCEEEccCCcCCccchhhccCCcCcEecccCCcccccC
Q 017542 228 SSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSL 267 (369)
Q Consensus 228 ~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~ 267 (369)
++|++|++++|+++++|..++.+++|+.|++++| .++++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBE
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCC
Confidence 3567777777777777766777777777777777 45544
No 54
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.10 E-value=1.4e-06 Score=72.64 Aligned_cols=193 Identities=23% Similarity=0.222 Sum_probs=94.6
Q ss_pred CCCCCCCCEEeCcCCcccccc----cccccCCCCCcEEecCCCcCC---ccCc-------hhhhccCccceeeccccccc
Q 017542 59 IECLPNLETLEMSFCNSLKRL----STSICKLKSLRSLDLSYCINL---ESFP-------EILEKMELLEEINLEEASNI 124 (369)
Q Consensus 59 ~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~---~~~~-------~~~~~l~~L~~L~l~~~~~~ 124 (369)
+..+..+..+++++|...+.. ...+.+-.+|+..+++.-... ..++ ..+-.|++|+..++++|...
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 344667777888887665432 233344566777666652111 1111 23455677777777766655
Q ss_pred cccchh----hhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCc-
Q 017542 125 KELPSS----IENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPP- 199 (369)
Q Consensus 125 ~~~~~~----~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~- 199 (369)
...|+. +..-+.|++|.+++|.....-...++ +.|.+|- .| .-...-+.|+....+.|+....+.
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rig--kal~~la--~n------KKaa~kp~Le~vicgrNRlengs~~ 175 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIG--KALFHLA--YN------KKAADKPKLEVVICGRNRLENGSKE 175 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHH--HHHHHHH--HH------hhhccCCCceEEEeccchhccCcHH
Confidence 544432 33445666666666542211111010 0111110 00 011233556666666666333221
Q ss_pred ----cccCCCCCcEEeccCCCCccC------CCCCCCCCCCCEEEccCCcCCc-----cchhhccCCcCcEecccCC
Q 017542 200 ----LLSGLSSLKKLELGDCEIMEI------PPDIGCLSSLESLNLSGNNIES-----LPTSISQLSRLRWLYLVNC 261 (369)
Q Consensus 200 ----~~~~~~~L~~L~l~~~~~~~~------~~~~~~~~~L~~L~l~~~~l~~-----~~~~~~~~~~L~~L~l~~~ 261 (369)
.+..-..|+.+.+..|.+..- ...+..+.+|+.||+..|.++. +...+..-+.|+.|.+.+|
T Consensus 176 ~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 176 LSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred HHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence 222234566666666666541 1123456667777777766652 1223344455666666666
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.04 E-value=4.8e-06 Score=50.06 Aligned_cols=40 Identities=38% Similarity=0.737 Sum_probs=27.7
Q ss_pred CCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccc
Q 017542 205 SSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLP 244 (369)
Q Consensus 205 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 244 (369)
++|++|++++|++.+++..+..+++|++|++++|.+++++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 3577777777777776665777777777777777777665
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.98 E-value=2.9e-06 Score=82.57 Aligned_cols=156 Identities=20% Similarity=0.284 Sum_probs=92.5
Q ss_pred CCCcEEecCCCcCCcc-Cc-hhhhccCccceeecccccccc-ccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhh
Q 017542 87 KSLRSLDLSYCINLES-FP-EILEKMELLEEINLEEASNIK-ELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLER 163 (369)
Q Consensus 87 ~~L~~L~l~~~~~~~~-~~-~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 163 (369)
.+|++|++++...... .+ ..-.-+|.|+.|.+.+-.... ++.....++++|..||+++++ ++.+ .+++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHHH
Confidence 5788888877544432 22 233457888888887433222 333445577888888888844 4444 45778888888
Q ss_pred hccCcccCCCCC--cccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCcc-CCCCCCCCCCCCEEEccCCcC
Q 017542 164 LHAGLLAIPQAP--SSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIME-IPPDIGCLSSLESLNLSGNNI 240 (369)
Q Consensus 164 L~l~~~~~~~~~--~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~l 240 (369)
|.+.+-.+.... ..+.++++|+.||++.......+. +.. ..+.-..+|+|+.||.|++.+
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~-----------------ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTK-----------------IIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchH-----------------HHHHHHHhcccCccccEEecCCcch
Confidence 887776665322 345567777777777654222221 000 011123467888888888777
Q ss_pred C--ccchhhccCCcCcEecccCC
Q 017542 241 E--SLPTSISQLSRLRWLYLVNC 261 (369)
Q Consensus 241 ~--~~~~~~~~~~~L~~L~l~~~ 261 (369)
. .+...+...|+|+.+.+-+|
T Consensus 263 ~~~~le~ll~sH~~L~~i~~~~~ 285 (699)
T KOG3665|consen 263 NEEILEELLNSHPNLQQIAALDC 285 (699)
T ss_pred hHHHHHHHHHhCccHhhhhhhhh
Confidence 6 22334456677777765544
No 57
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.88 E-value=3e-06 Score=80.47 Aligned_cols=108 Identities=30% Similarity=0.427 Sum_probs=52.9
Q ss_pred CeeEEec-CCccCcc--cCccCCCCCCCCEEeCcCC-ccccccc----ccccCCCCCcEEecCCCcCCcc--Cchhhhcc
Q 017542 41 NVVELNL-MCTPIEE--VPLSIECLPNLETLEMSFC-NSLKRLS----TSICKLKSLRSLDLSYCINLES--FPEILEKM 110 (369)
Q Consensus 41 ~L~~L~l-~~~~~~~--l~~~~~~~~~L~~L~l~~~-~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l 110 (369)
.|+.+.+ .+..++. +......+++|+.|++++| ......+ .....+++|+.|+++++...++ +......|
T Consensus 189 ~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c 268 (482)
T KOG1947|consen 189 LLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRC 268 (482)
T ss_pred hhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhC
Confidence 5555555 2333433 2233455666666666652 2211111 1223456666666666653322 11222336
Q ss_pred Cccceeecccccccc--ccchhhhcCCCCCeEeecCCCCC
Q 017542 111 ELLEEINLEEASNIK--ELPSSIENLEGLKQLKLTGCTKL 148 (369)
Q Consensus 111 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~ 148 (369)
++|++|.+.+|..++ .+......+++|++|++++|..+
T Consensus 269 ~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 269 PNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred CCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 666666665555332 23333445666777776666554
No 58
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.84 E-value=3.5e-07 Score=86.83 Aligned_cols=109 Identities=27% Similarity=0.387 Sum_probs=48.1
Q ss_pred cCccceeeccccccccc--cchhhhcCCCCCeEeecCC-CCCCCCC----cccCCCcchhhhccCccc-CCCC-Ccccc-
Q 017542 110 MELLEEINLEEASNIKE--LPSSIENLEGLKQLKLTGC-TKLGSLP----ESLGNLKSLERLHAGLLA-IPQA-PSSIV- 179 (369)
Q Consensus 110 l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~-~~~~~~~----~~~~~l~~L~~L~l~~~~-~~~~-~~~l~- 179 (369)
++.|+.+.+.++..+.. +......++.|+.|++++| ......+ .....+++|+.++++++. ++.. ...+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45555555555544443 2233445555555555542 2211111 112334555555555554 3211 11111
Q ss_pred cCCCCcEEeecCCCC-C--CCCccccCCCCCcEEeccCCCCc
Q 017542 180 DLNKLETLSLFECRG-L--VLPPLLSGLSSLKKLELGDCEIM 218 (369)
Q Consensus 180 ~~~~L~~L~l~~~~~-~--~~~~~~~~~~~L~~L~l~~~~~~ 218 (369)
.+++|+.|.+.+|.. + .+......++.|+.|++++|...
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 255666666555552 1 12223344555666666655543
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.76 E-value=5.5e-06 Score=80.71 Aligned_cols=103 Identities=20% Similarity=0.148 Sum_probs=62.4
Q ss_pred CcchhhhccCcccCC--CCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccC--CCCCCCCCCCCEE
Q 017542 158 LKSLERLHAGLLAIP--QAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEI--PPDIGCLSSLESL 233 (369)
Q Consensus 158 l~~L~~L~l~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~L~~L 233 (369)
+|+|+.|.+.+-.+. .+.....++++|..||++++....+ ..++.+++|+.|.+.+-.+... ...+..+++|+.|
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vL 225 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVL 225 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCee
Confidence 455555555544332 1122344566777777777765555 3466677777777766665542 2236778888889
Q ss_pred EccCCcCCccc-------hhhccCCcCcEecccCC
Q 017542 234 NLSGNNIESLP-------TSISQLSRLRWLYLVNC 261 (369)
Q Consensus 234 ~l~~~~l~~~~-------~~~~~~~~L~~L~l~~~ 261 (369)
|+|.......+ +.-..+|+|+.||.++.
T Consensus 226 DIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 226 DISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred eccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 88886444222 12235789999999876
No 60
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.63 E-value=2.4e-06 Score=63.87 Aligned_cols=77 Identities=26% Similarity=0.368 Sum_probs=33.7
Q ss_pred CcEEeecCCCCCCCCccc-cCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccchhhccCCcCcEecccC
Q 017542 184 LETLSLFECRGLVLPPLL-SGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVN 260 (369)
Q Consensus 184 L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~ 260 (369)
|+..++++|....+|+.+ .+++.++.|++++|.++++|..+..++.|+.|+++.|.+...|..+..+.++-.|+.-+
T Consensus 55 l~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 55 LTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred EEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCC
Confidence 333344444444444322 23334444444444444444444444444444444444444444443344444444333
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.62 E-value=9.6e-05 Score=59.22 Aligned_cols=99 Identities=26% Similarity=0.278 Sum_probs=50.8
Q ss_pred hhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCcccc-CCCCCcEEeccCCCCccCC--CCCCCCCCCCEEEccC
Q 017542 161 LERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLS-GLSSLKKLELGDCEIMEIP--PDIGCLSSLESLNLSG 237 (369)
Q Consensus 161 L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~ 237 (369)
...+++++|.+..+ ..+..++.|..|.+++|.+..+.+.+. .+++|..|.+.+|.+.++. ..+..||.|++|.+-+
T Consensus 44 ~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred cceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence 34445555554433 234445556666666655544443222 2345666666666665532 2245566666666666
Q ss_pred CcCCccc----hhhccCCcCcEecccC
Q 017542 238 NNIESLP----TSISQLSRLRWLYLVN 260 (369)
Q Consensus 238 ~~l~~~~----~~~~~~~~L~~L~l~~ 260 (369)
|.+++-. ..+..+|+|+.||+.+
T Consensus 123 Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 123 NPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CchhcccCceeEEEEecCcceEeehhh
Confidence 6555322 1234556666666544
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.60 E-value=2.9e-06 Score=63.41 Aligned_cols=86 Identities=19% Similarity=0.178 Sum_probs=42.3
Q ss_pred cchhhhccCcccCCCCCccccc-CCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccC
Q 017542 159 KSLERLHAGLLAIPQAPSSIVD-LNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSG 237 (369)
Q Consensus 159 ~~L~~L~l~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 237 (369)
.+|...++++|.+..+|..|.. .+.++.|++++|....+|..+..++.|+.|+++.|.+...|..+..+.++-.|+.-+
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCC
Confidence 3344444455554444443332 234455555555555555445555555555555555555444444455555555555
Q ss_pred CcCCccc
Q 017542 238 NNIESLP 244 (369)
Q Consensus 238 ~~l~~~~ 244 (369)
|.+..++
T Consensus 133 na~~eid 139 (177)
T KOG4579|consen 133 NARAEID 139 (177)
T ss_pred CccccCc
Confidence 5554444
No 63
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.58 E-value=1.8e-05 Score=66.19 Aligned_cols=179 Identities=20% Similarity=0.196 Sum_probs=104.6
Q ss_pred cCCeeEEecCCccCc-----ccCccCCCCCCCCEEeCcCCcc---cccc-------cccccCCCCCcEEecCCCcCCccC
Q 017542 39 SGNVVELNLMCTPIE-----EVPLSIECLPNLETLEMSFCNS---LKRL-------STSICKLKSLRSLDLSYCINLESF 103 (369)
Q Consensus 39 ~~~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~~~~---~~~~-------~~~~~~~~~L~~L~l~~~~~~~~~ 103 (369)
+..++.+++++|.|. .+...+.+-++|+..++++-.. ...+ .+.+-+||.|+..+++.|-.....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 348999999999986 3344466778999999986321 1122 234567999999999998666554
Q ss_pred c----hhhhccCccceeecccccccccc----chh---------hhcCCCCCeEeecCCCCCCCCCc-----ccCCCcch
Q 017542 104 P----EILEKMELLEEINLEEASNIKEL----PSS---------IENLEGLKQLKLTGCTKLGSLPE-----SLGNLKSL 161 (369)
Q Consensus 104 ~----~~~~~l~~L~~L~l~~~~~~~~~----~~~---------~~~l~~L~~L~l~~~~~~~~~~~-----~~~~l~~L 161 (369)
| +.+++-+.|.+|.+.+|...... ..+ ..+-|.|+.+...+| .+...+. .+..-..|
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN-Rlengs~~~~a~~l~sh~~l 187 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN-RLENGSKELSAALLESHENL 187 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc-hhccCcHHHHHHHHHhhcCc
Confidence 4 45678889999999965433211 111 123456777766663 3333221 12233466
Q ss_pred hhhccCcccCCC--CC----cccccCCCCcEEeecCCCCCC-----CCccccCCCCCcEEeccCCCCc
Q 017542 162 ERLHAGLLAIPQ--AP----SSIVDLNKLETLSLFECRGLV-----LPPLLSGLSSLKKLELGDCEIM 218 (369)
Q Consensus 162 ~~L~l~~~~~~~--~~----~~l~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~ 218 (369)
+++.+..|+|.. +. ..+..+.+|+.|++..|..+. +...+..|+.|+.|.+..|-++
T Consensus 188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 666777666651 10 123345666666666655321 1123444555555555555443
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.38 E-value=0.00038 Score=55.87 Aligned_cols=81 Identities=27% Similarity=0.429 Sum_probs=65.0
Q ss_pred CCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCCC-CCCCCCEEEccCCcCCccc--hhhccCCcCcEec
Q 017542 181 LNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIG-CLSSLESLNLSGNNIESLP--TSISQLSRLRWLY 257 (369)
Q Consensus 181 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~l~~~~--~~~~~~~~L~~L~ 257 (369)
......+++++|....++. +..++.|.+|.+.+|.++.+...+. .+++|..|.+.+|++..+. +.+..||.|++|.
T Consensus 41 ~d~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccccceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 3467788899888665554 6678999999999999999655554 4688999999999888443 4578899999999
Q ss_pred ccCCc
Q 017542 258 LVNCV 262 (369)
Q Consensus 258 l~~~~ 262 (369)
+-+|+
T Consensus 120 ll~Np 124 (233)
T KOG1644|consen 120 LLGNP 124 (233)
T ss_pred ecCCc
Confidence 99985
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.18 E-value=0.00029 Score=58.80 Aligned_cols=58 Identities=40% Similarity=0.553 Sum_probs=24.1
Q ss_pred CCCCcEEeccCC--CCcc-CCCCCCCCCCCCEEEccCCcCCccc--hhhccCCcCcEecccCC
Q 017542 204 LSSLKKLELGDC--EIME-IPPDIGCLSSLESLNLSGNNIESLP--TSISQLSRLRWLYLVNC 261 (369)
Q Consensus 204 ~~~L~~L~l~~~--~~~~-~~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~~L~~L~l~~~ 261 (369)
+++|++|.++.| ++.. +...+..+|+|+++++++|++..+. ..+..+++|..|++.+|
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNC 126 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccC
Confidence 344444444444 2222 2222333355555555555444221 12334444455555544
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.94 E-value=0.0006 Score=56.99 Aligned_cols=56 Identities=23% Similarity=0.210 Sum_probs=23.9
Q ss_pred CeeEEecCCccCcccCccCCCCCCCCEEeCcCC--cccccccccccCCCCCcEEecCCC
Q 017542 41 NVVELNLMCTPIEEVPLSIECLPNLETLEMSFC--NSLKRLSTSICKLKSLRSLDLSYC 97 (369)
Q Consensus 41 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~ 97 (369)
.|+.+++.+..++.+.. +..+++|++|.++.| .....++.....+++|++|++++|
T Consensus 44 ~le~ls~~n~gltt~~~-~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N 101 (260)
T KOG2739|consen 44 ELELLSVINVGLTTLTN-FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN 101 (260)
T ss_pred chhhhhhhccceeeccc-CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC
Confidence 44444444433333222 333455555555554 222233322333455555555554
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.94 E-value=6.3e-05 Score=63.25 Aligned_cols=97 Identities=26% Similarity=0.310 Sum_probs=54.8
Q ss_pred CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCc--hhhhccCccceeec
Q 017542 41 NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFP--EILEKMELLEEINL 118 (369)
Q Consensus 41 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l 118 (369)
+.++|+..++++.+|.. ...|+.|++|.|+.|... .+.. +..|.+|++|+|..|.+. ++. +-+.++++|+.|.+
T Consensus 20 ~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvNkIs-sL~p-l~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVNKIS-SLAP-LQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHHHH-HHhcccceeEEeeccccc-cchh-HHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhh
Confidence 45566666666665533 345677777777765433 2222 556777777777665332 222 23456777777777
Q ss_pred cccccccccch-----hhhcCCCCCeEe
Q 017542 119 EEASNIKELPS-----SIENLEGLKQLK 141 (369)
Q Consensus 119 ~~~~~~~~~~~-----~~~~l~~L~~L~ 141 (369)
..|+.....+. .+..+++|+.|+
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 76666553322 234566666664
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.76 E-value=7.8e-05 Score=62.70 Aligned_cols=97 Identities=19% Similarity=0.214 Sum_probs=74.9
Q ss_pred CCCccEEecCCCCCccccC--CccCCeeEEecCCccCcccCccCCCCCCCCEEeCcCCccccccc--ccccCCCCCcEEe
Q 017542 18 FISSIKIDCYKCVNLREFP--RISGNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLS--TSICKLKSLRSLD 93 (369)
Q Consensus 18 ~~~L~~L~l~~~~~l~~~~--~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~ 93 (369)
+.+.+.|++.||. +.+|. ..++.|+.|.|+-|.|+.+.. +..|++|+.|+|+.|.... +. .-+.++++|+.|.
T Consensus 18 l~~vkKLNcwg~~-L~DIsic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-LDDISICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCC-ccHHHHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhhHh
Confidence 4567889999998 88765 456699999999999998755 7889999999999975433 22 2367899999999
Q ss_pred cCCCcCCccCc-----hhhhccCccceee
Q 017542 94 LSYCINLESFP-----EILEKMELLEEIN 117 (369)
Q Consensus 94 l~~~~~~~~~~-----~~~~~l~~L~~L~ 117 (369)
|..|+--...+ ..+.-+++|++||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 98876544433 4567788999886
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.39 E-value=0.012 Score=44.60 Aligned_cols=11 Identities=18% Similarity=0.486 Sum_probs=4.4
Q ss_pred CCCCCcEEecc
Q 017542 203 GLSSLKKLELG 213 (369)
Q Consensus 203 ~~~~L~~L~l~ 213 (369)
.+++++.+.+.
T Consensus 79 ~~~~l~~i~~~ 89 (129)
T PF13306_consen 79 NCTNLKNIDIP 89 (129)
T ss_dssp T-TTECEEEET
T ss_pred ccccccccccC
Confidence 34444444443
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.37 E-value=0.0088 Score=45.45 Aligned_cols=81 Identities=16% Similarity=0.215 Sum_probs=30.5
Q ss_pred CCCCCCCCEEeCcCCcccccc-cccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCC
Q 017542 59 IECLPNLETLEMSFCNSLKRL-STSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGL 137 (369)
Q Consensus 59 ~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 137 (369)
+..+++|+.+.+.. . ...+ ...|..+.+|+.+.+... ....-...+..+++++.+.+.+ .........+..++++
T Consensus 8 F~~~~~l~~i~~~~-~-~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-T-IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC-C-eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 44555566555553 1 2222 233455555666665542 2222223445555555555542 1111122234445555
Q ss_pred CeEeec
Q 017542 138 KQLKLT 143 (369)
Q Consensus 138 ~~L~l~ 143 (369)
+.+.+.
T Consensus 84 ~~i~~~ 89 (129)
T PF13306_consen 84 KNIDIP 89 (129)
T ss_dssp CEEEET
T ss_pred cccccC
Confidence 555553
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.97 E-value=0.0036 Score=31.20 Aligned_cols=20 Identities=60% Similarity=0.923 Sum_probs=12.1
Q ss_pred CCCEEEccCCcCCccchhhc
Q 017542 229 SLESLNLSGNNIESLPTSIS 248 (369)
Q Consensus 229 ~L~~L~l~~~~l~~~~~~~~ 248 (369)
+|++|++++|.++.+|..++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 35666666666666665443
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.38 E-value=0.013 Score=27.06 Aligned_cols=15 Identities=47% Similarity=0.724 Sum_probs=6.0
Q ss_pred CCCEEEccCCcCCcc
Q 017542 229 SLESLNLSGNNIESL 243 (369)
Q Consensus 229 ~L~~L~l~~~~l~~~ 243 (369)
+|++|++++|+++.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 455555555554443
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.05 E-value=0.015 Score=28.93 Aligned_cols=16 Identities=19% Similarity=0.316 Sum_probs=6.5
Q ss_pred eeEEecCCccCcccCc
Q 017542 42 VVELNLMCTPIEEVPL 57 (369)
Q Consensus 42 L~~L~l~~~~~~~l~~ 57 (369)
|++|++++|.++.+|.
T Consensus 2 L~~Ldls~n~l~~ip~ 17 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPS 17 (22)
T ss_dssp ESEEEETSSEESEEGT
T ss_pred ccEEECCCCcCEeCCh
Confidence 3444444444444433
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.88 E-value=0.0049 Score=49.67 Aligned_cols=84 Identities=19% Similarity=0.148 Sum_probs=41.8
Q ss_pred CCcEEeccCCCCcc-CCCCCCCCCCCCEEEccCCc-CCccc-hhh-ccCCcCcEecccCCcccccCCC----CCccccee
Q 017542 206 SLKKLELGDCEIME-IPPDIGCLSSLESLNLSGNN-IESLP-TSI-SQLSRLRWLYLVNCVKLQSLPE----LPLLLVML 277 (369)
Q Consensus 206 ~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~-l~~~~-~~~-~~~~~L~~L~l~~~~~l~~~~~----~~~~L~~L 277 (369)
.++.++-+++.+.. -.+.+..++.++.|.+.+|. +.+.- ..+ +-.++|+.|+|++|+.+++-+- -+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 34555555555544 22335555666666666652 22111 111 2346677777777766665331 23455555
Q ss_pred ccccccccccCC
Q 017542 278 GASDCKRLQFLP 289 (369)
Q Consensus 278 ~l~~c~~L~~l~ 289 (369)
.+++.+....+.
T Consensus 182 ~l~~l~~v~~~e 193 (221)
T KOG3864|consen 182 HLYDLPYVANLE 193 (221)
T ss_pred HhcCchhhhchH
Confidence 555555444333
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.08 E-value=0.022 Score=46.07 Aligned_cols=15 Identities=33% Similarity=0.864 Sum_probs=6.4
Q ss_pred CCCCeEeecCCCCCC
Q 017542 135 EGLKQLKLTGCTKLG 149 (369)
Q Consensus 135 ~~L~~L~l~~~~~~~ 149 (369)
++|+.|++++|..++
T Consensus 151 ~~L~~L~lsgC~rIT 165 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRIT 165 (221)
T ss_pred cchheeeccCCCeec
Confidence 344444444444433
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.09 E-value=0.0013 Score=61.67 Aligned_cols=36 Identities=28% Similarity=0.154 Sum_probs=17.0
Q ss_pred CCEEeCcCCccccc----ccccccCCCCCcEEecCCCcCC
Q 017542 65 LETLEMSFCNSLKR----LSTSICKLKSLRSLDLSYCINL 100 (369)
Q Consensus 65 L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~ 100 (369)
+..+.+.+|..... +...+...+.|+.|++++|...
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~ 128 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG 128 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc
Confidence 44555555543321 2233344555566666555443
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.72 E-value=0.19 Score=25.95 Aligned_cols=20 Identities=40% Similarity=0.662 Sum_probs=13.9
Q ss_pred CCCCEEEccCCcCCccchhh
Q 017542 228 SSLESLNLSGNNIESLPTSI 247 (369)
Q Consensus 228 ~~L~~L~l~~~~l~~~~~~~ 247 (369)
++|++|++++|.++.+|..+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 46777777777777776543
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.72 E-value=0.19 Score=25.95 Aligned_cols=20 Identities=40% Similarity=0.662 Sum_probs=13.9
Q ss_pred CCCCEEEccCCcCCccchhh
Q 017542 228 SSLESLNLSGNNIESLPTSI 247 (369)
Q Consensus 228 ~~L~~L~l~~~~l~~~~~~~ 247 (369)
++|++|++++|.++.+|..+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 46777777777777776543
No 79
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=90.86 E-value=0.17 Score=26.17 Aligned_cols=17 Identities=29% Similarity=0.468 Sum_probs=12.9
Q ss_pred CCcCcEecccCCccccc
Q 017542 250 LSRLRWLYLVNCVKLQS 266 (369)
Q Consensus 250 ~~~L~~L~l~~~~~l~~ 266 (369)
+++|++|++++|+.+++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 46788888888877765
No 80
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=90.04 E-value=0.0016 Score=61.00 Aligned_cols=174 Identities=24% Similarity=0.285 Sum_probs=75.0
Q ss_pred CcEEecCCCcCCcc----CchhhhccCccceeeccccccccccc----hhhhcC-CCCCeEeecCCCCCCC----CCccc
Q 017542 89 LRSLDLSYCINLES----FPEILEKMELLEEINLEEASNIKELP----SSIENL-EGLKQLKLTGCTKLGS----LPESL 155 (369)
Q Consensus 89 L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~l-~~L~~L~l~~~~~~~~----~~~~~ 155 (369)
+..|.+.+|..... +...+...+.|+.|++++|....... ..+... ..+++|.+..|..... +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 55555555544332 22334445556666666555442111 111111 2344444444433322 12233
Q ss_pred CCCcchhhhccCcccCCC-----CCccc----ccCCCCcEEeecCCCCCCC-----CccccCCCC-CcEEeccCCCCcc-
Q 017542 156 GNLKSLERLHAGLLAIPQ-----APSSI----VDLNKLETLSLFECRGLVL-----PPLLSGLSS-LKKLELGDCEIME- 219 (369)
Q Consensus 156 ~~l~~L~~L~l~~~~~~~-----~~~~l----~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~-L~~L~l~~~~~~~- 219 (369)
.....++.++++.|.+.. ++..+ ....++++|.+++|..+.. ...+...++ +..+++..|.+.+
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 345555556555555431 11111 2244555555555553211 112222233 4445555555543
Q ss_pred ----CCCCCCCC-CCCCEEEccCCcCC-----ccchhhccCCcCcEecccCCc
Q 017542 220 ----IPPDIGCL-SSLESLNLSGNNIE-----SLPTSISQLSRLRWLYLVNCV 262 (369)
Q Consensus 220 ----~~~~~~~~-~~L~~L~l~~~~l~-----~~~~~~~~~~~L~~L~l~~~~ 262 (369)
+...+..+ +.+++++++.|.++ .+...+..++.++.+.++.|+
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~ 301 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNP 301 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCc
Confidence 11122222 45566666666554 233344455566666665553
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=83.77 E-value=0.016 Score=47.85 Aligned_cols=85 Identities=19% Similarity=0.109 Sum_probs=53.4
Q ss_pred ccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccchhhccCCcCcEecc
Q 017542 179 VDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYL 258 (369)
Q Consensus 179 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l 258 (369)
......+.||++.++...+-..++.+..+..|+++.+.+.-+|..+.....+..+++..|..+..|...+..|.+++++.
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence 34455566666666544444444555566666666666666666666666666666666777777766677777777777
Q ss_pred cCCcc
Q 017542 259 VNCVK 263 (369)
Q Consensus 259 ~~~~~ 263 (369)
.+++.
T Consensus 119 k~~~~ 123 (326)
T KOG0473|consen 119 KKTEF 123 (326)
T ss_pred ccCcc
Confidence 66653
No 82
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=83.23 E-value=0.87 Score=23.55 Aligned_cols=18 Identities=50% Similarity=0.761 Sum_probs=11.8
Q ss_pred CCCCEEEccCCcCCccch
Q 017542 228 SSLESLNLSGNNIESLPT 245 (369)
Q Consensus 228 ~~L~~L~l~~~~l~~~~~ 245 (369)
+.|+.|++++|+++.+|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 456677777777666664
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=78.30 E-value=0.13 Score=42.78 Aligned_cols=83 Identities=18% Similarity=0.106 Sum_probs=46.0
Q ss_pred CCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccC
Q 017542 135 EGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGD 214 (369)
Q Consensus 135 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 214 (369)
...+.|+++.+. .......++.++.+..++++.+.+...|..+.+...++.++...|.....|.+++..+.+++++..+
T Consensus 42 kr~tvld~~s~r-~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~ 120 (326)
T KOG0473|consen 42 KRVTVLDLSSNR-LVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKK 120 (326)
T ss_pred ceeeeehhhhhH-HHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhcc
Confidence 334444444422 2222334455556666666666666666666666666666666666666666666666666666665
Q ss_pred CCCc
Q 017542 215 CEIM 218 (369)
Q Consensus 215 ~~~~ 218 (369)
+.+.
T Consensus 121 ~~~~ 124 (326)
T KOG0473|consen 121 TEFF 124 (326)
T ss_pred Ccch
Confidence 5543
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=77.72 E-value=0.56 Score=23.59 Aligned_cols=12 Identities=58% Similarity=0.805 Sum_probs=4.9
Q ss_pred CCCCEEeCcCCc
Q 017542 63 PNLETLEMSFCN 74 (369)
Q Consensus 63 ~~L~~L~l~~~~ 74 (369)
++|++|+|++|.
T Consensus 2 ~~L~~L~l~~n~ 13 (24)
T PF13516_consen 2 PNLETLDLSNNQ 13 (24)
T ss_dssp TT-SEEE-TSSB
T ss_pred CCCCEEEccCCc
Confidence 345555555544
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=74.89 E-value=2.9 Score=21.64 Aligned_cols=16 Identities=44% Similarity=0.715 Sum_probs=10.1
Q ss_pred CCCCEEEccCCcCCcc
Q 017542 228 SSLESLNLSGNNIESL 243 (369)
Q Consensus 228 ~~L~~L~l~~~~l~~~ 243 (369)
.+|++|+++.|+|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4566777777766543
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=69.26 E-value=1.5 Score=41.23 Aligned_cols=65 Identities=28% Similarity=0.185 Sum_probs=29.7
Q ss_pred CCCCCCEEeCcCCcccc--cccccccCCCCCcEEecCCCcCCccCchhhh--ccCccceeecccccccc
Q 017542 61 CLPNLETLEMSFCNSLK--RLSTSICKLKSLRSLDLSYCINLESFPEILE--KMELLEEINLEEASNIK 125 (369)
Q Consensus 61 ~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~ 125 (369)
+.+.+..+++++|.... .+.......++|+.|+|++|.........+. ....|++|.+.||+..+
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 44555566666554321 2222223356666666666522211111121 22345666666666554
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=63.80 E-value=3 Score=39.35 Aligned_cols=34 Identities=29% Similarity=0.250 Sum_probs=15.3
Q ss_pred CCCcEEeecCCCCCCC---CccccCCCCCcEEeccCC
Q 017542 182 NKLETLSLFECRGLVL---PPLLSGLSSLKKLELGDC 215 (369)
Q Consensus 182 ~~L~~L~l~~~~~~~~---~~~~~~~~~L~~L~l~~~ 215 (369)
+.+..+++++|+...+ .......|+|+.|+|++|
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 3444455555542222 122333455555555555
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=63.69 E-value=6.5 Score=20.61 Aligned_cols=14 Identities=43% Similarity=0.634 Sum_probs=9.9
Q ss_pred CCCCEEEccCCcCC
Q 017542 228 SSLESLNLSGNNIE 241 (369)
Q Consensus 228 ~~L~~L~l~~~~l~ 241 (369)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46777777777665
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=34.06 E-value=2.6e+02 Score=26.53 Aligned_cols=35 Identities=23% Similarity=0.330 Sum_probs=18.5
Q ss_pred CcEEeccCCCCcc----CCCCCCCCCCCCEEEccCCcCC
Q 017542 207 LKKLELGDCEIME----IPPDIGCLSSLESLNLSGNNIE 241 (369)
Q Consensus 207 L~~L~l~~~~~~~----~~~~~~~~~~L~~L~l~~~~l~ 241 (369)
++.+.++.|.... ....+..-+.+.+|++++|...
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mg 453 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMG 453 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcc
Confidence 4455555555433 1122344566777777777555
Done!