Query 017542
Match_columns 369
No_of_seqs 255 out of 3759
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 16:06:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017542.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017542hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eco_A Uncharacterized protein 100.0 3.2E-30 1.1E-34 250.3 15.1 265 35-303 198-523 (636)
2 3rgz_A Protein brassinosteroid 100.0 1.3E-29 4.6E-34 251.3 19.8 249 41-289 395-721 (768)
3 4eco_A Uncharacterized protein 100.0 1E-29 3.4E-34 246.8 14.0 216 41-259 306-544 (636)
4 3rgz_A Protein brassinosteroid 100.0 7.2E-29 2.5E-33 246.0 20.2 268 18-285 393-740 (768)
5 4ecn_A Leucine-rich repeat pro 100.0 4.4E-29 1.5E-33 247.1 18.2 263 35-302 440-762 (876)
6 3v47_A TOLL-like receptor 5B a 100.0 1.1E-27 3.9E-32 223.9 23.5 272 7-282 20-381 (455)
7 2ft3_A Biglycan; proteoglycan, 100.0 1.7E-27 5.7E-32 213.5 22.6 271 5-283 12-305 (332)
8 4fmz_A Internalin; leucine ric 100.0 2.2E-27 7.7E-32 214.0 23.3 270 3-288 51-326 (347)
9 4fmz_A Internalin; leucine ric 100.0 1.2E-27 4E-32 215.8 21.1 300 11-328 36-343 (347)
10 2id5_A Lingo-1, leucine rich r 100.0 3.4E-28 1.2E-32 228.8 18.3 273 7-282 21-330 (477)
11 2id5_A Lingo-1, leucine rich r 100.0 2.2E-27 7.4E-32 223.3 23.5 258 3-262 39-331 (477)
12 1xku_A Decorin; proteoglycan, 100.0 4.4E-27 1.5E-31 210.5 24.4 257 20-283 32-304 (330)
13 4ecn_A Leucine-rich repeat pro 100.0 2.1E-28 7E-33 242.3 17.1 245 12-261 481-763 (876)
14 3o6n_A APL1; leucine-rich repe 100.0 2.5E-27 8.7E-32 217.0 22.3 240 17-261 43-328 (390)
15 2z7x_B TOLL-like receptor 1, v 100.0 2.1E-27 7.1E-32 225.8 20.9 137 2-147 6-150 (520)
16 2z81_A CD282 antigen, TOLL-lik 100.0 5.4E-28 1.8E-32 231.4 16.3 140 8-149 16-162 (549)
17 3t6q_A CD180 antigen; protein- 100.0 7.6E-27 2.6E-31 226.0 24.5 244 17-261 55-386 (606)
18 1ogq_A PGIP-2, polygalacturona 100.0 2.4E-28 8.1E-33 216.9 12.2 247 40-287 50-306 (313)
19 2z81_A CD282 antigen, TOLL-lik 100.0 1.4E-27 4.9E-32 228.4 18.4 327 2-333 32-512 (549)
20 1ogq_A PGIP-2, polygalacturona 100.0 7.2E-28 2.5E-32 213.8 14.7 247 19-267 50-307 (313)
21 3bz5_A Internalin-J, INLJ; leu 100.0 5.5E-27 1.9E-31 218.4 20.5 267 17-305 40-319 (457)
22 3oja_B Anopheles plasmodium-re 100.0 9.8E-27 3.3E-31 224.5 22.7 264 17-283 49-356 (597)
23 3t6q_A CD180 antigen; protein- 100.0 1.6E-26 5.4E-31 223.8 24.0 260 20-282 255-533 (606)
24 3v47_A TOLL-like receptor 5B a 99.9 2E-26 6.7E-31 215.4 23.5 280 2-283 36-406 (455)
25 4fcg_A Uncharacterized protein 99.9 4.2E-27 1.4E-31 210.1 17.7 218 41-261 82-311 (328)
26 3bz5_A Internalin-J, INLJ; leu 99.9 7.7E-27 2.6E-31 217.5 20.0 285 2-307 48-342 (457)
27 3vq2_A TLR4, TOLL-like recepto 99.9 1.6E-26 5.6E-31 223.7 21.0 139 8-148 22-166 (606)
28 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 4.1E-26 1.4E-30 218.8 23.0 316 8-333 42-512 (562)
29 1o6v_A Internalin A; bacterial 99.9 2.5E-26 8.5E-31 215.3 21.0 260 8-282 57-341 (466)
30 2z7x_B TOLL-like receptor 1, v 99.9 1.3E-26 4.3E-31 220.4 19.2 94 2-99 27-127 (520)
31 3vq2_A TLR4, TOLL-like recepto 99.9 1.7E-26 5.8E-31 223.6 19.9 114 9-123 44-165 (606)
32 1xku_A Decorin; proteoglycan, 99.9 2.6E-25 8.9E-30 199.0 25.3 248 8-263 42-305 (330)
33 1ziw_A TOLL-like receptor 3; i 99.9 6.1E-26 2.1E-30 222.6 22.4 205 104-310 398-626 (680)
34 3zyj_A Leucine-rich repeat-con 99.9 1.4E-25 4.7E-30 208.7 23.3 241 20-262 44-290 (440)
35 3zyi_A Leucine-rich repeat-con 99.9 1.8E-25 6.2E-30 208.6 22.6 240 21-262 56-301 (452)
36 4fcg_A Uncharacterized protein 99.9 4.7E-26 1.6E-30 203.3 17.7 210 62-274 80-300 (328)
37 2ft3_A Biglycan; proteoglycan, 99.9 3E-25 1E-29 198.7 23.0 267 8-283 44-331 (332)
38 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.4E-25 4.7E-30 215.2 22.1 95 2-100 58-159 (562)
39 3o6n_A APL1; leucine-rich repe 99.9 6.6E-26 2.3E-30 207.6 18.2 248 9-262 57-350 (390)
40 2z63_A TOLL-like receptor 4, v 99.9 5.3E-26 1.8E-30 218.5 17.8 148 181-330 372-530 (570)
41 2z63_A TOLL-like receptor 4, v 99.9 4.9E-26 1.7E-30 218.8 17.4 135 9-145 19-159 (570)
42 2z80_A TOLL-like receptor 2, v 99.9 1.2E-25 3.9E-30 203.2 18.8 281 15-302 27-327 (353)
43 3j0a_A TOLL-like receptor 5; m 99.9 1E-25 3.5E-30 225.7 20.1 166 3-169 31-214 (844)
44 2z66_A Variable lymphocyte rec 99.9 1.8E-25 6E-30 198.0 18.3 239 22-262 10-259 (306)
45 1o6v_A Internalin A; bacterial 99.9 7.5E-25 2.6E-29 205.2 23.0 266 3-283 75-364 (466)
46 1ozn_A Reticulon 4 receptor; N 99.9 2E-25 6.9E-30 195.5 17.7 219 22-241 14-238 (285)
47 3j0a_A TOLL-like receptor 5; m 99.9 7.9E-25 2.7E-29 219.2 24.3 272 7-282 14-372 (844)
48 1jl5_A Outer protein YOPM; leu 99.9 1.2E-24 4E-29 202.6 23.3 266 9-301 83-365 (454)
49 3oja_B Anopheles plasmodium-re 99.9 3E-25 1E-29 214.1 18.2 249 9-262 63-356 (597)
50 1ziw_A TOLL-like receptor 3; i 99.9 1.4E-24 4.7E-29 213.0 21.6 144 3-148 32-184 (680)
51 2z80_A TOLL-like receptor 2, v 99.9 2.2E-25 7.4E-30 201.4 14.3 253 7-262 41-312 (353)
52 2z66_A Variable lymphocyte rec 99.9 7.6E-25 2.6E-29 193.9 16.2 232 7-241 17-261 (306)
53 1jl5_A Outer protein YOPM; leu 99.9 2.3E-23 7.9E-28 193.8 26.3 250 8-283 102-368 (454)
54 1ozn_A Reticulon 4 receptor; N 99.9 9.1E-24 3.1E-28 185.0 21.4 218 43-262 14-236 (285)
55 1wwl_A Monocyte differentiatio 99.9 2.3E-26 7.8E-31 204.1 2.8 240 17-262 41-307 (312)
56 3zyj_A Leucine-rich repeat-con 99.9 2.6E-23 9E-28 193.3 22.0 239 41-283 44-290 (440)
57 3zyi_A Leucine-rich repeat-con 99.9 2.4E-23 8.3E-28 194.2 21.0 239 41-283 55-301 (452)
58 3o53_A Protein LRIM1, AGAP0063 99.9 6.4E-25 2.2E-29 195.3 8.4 237 18-265 33-276 (317)
59 4g8a_A TOLL-like receptor 4; l 99.9 9.1E-23 3.1E-27 198.3 23.3 136 8-145 42-183 (635)
60 3o53_A Protein LRIM1, AGAP0063 99.9 5.3E-24 1.8E-28 189.3 11.4 284 20-333 11-301 (317)
61 3g06_A SSPH2 (leucine-rich rep 99.9 6.5E-22 2.2E-26 189.8 24.2 243 7-283 50-295 (622)
62 2z62_A TOLL-like receptor 4, v 99.9 1.9E-22 6.5E-27 175.7 17.7 214 24-262 12-235 (276)
63 3g06_A SSPH2 (leucine-rich rep 99.9 1.1E-21 3.6E-26 188.3 24.3 237 19-289 40-277 (622)
64 2z62_A TOLL-like receptor 4, v 99.9 2.7E-22 9.1E-27 174.8 18.0 212 8-241 18-237 (276)
65 3oja_A Leucine-rich immune mol 99.9 2.6E-23 9.1E-28 195.3 10.2 231 18-259 33-270 (487)
66 1wwl_A Monocyte differentiatio 99.9 4.3E-24 1.5E-28 189.5 4.1 235 41-282 44-306 (312)
67 4g8a_A TOLL-like receptor 4; l 99.9 3.8E-22 1.3E-26 193.9 18.1 149 22-171 34-185 (635)
68 2o6q_A Variable lymphocyte rec 99.9 5.9E-21 2E-25 165.7 20.5 98 21-119 18-117 (270)
69 2o6q_A Variable lymphocyte rec 99.9 6.9E-21 2.4E-25 165.2 20.5 199 41-241 17-218 (270)
70 3oja_A Leucine-rich immune mol 99.9 3.7E-22 1.3E-26 187.4 13.2 212 41-263 35-249 (487)
71 1z7x_W Ribonuclease inhibitor; 99.9 1.6E-24 5.6E-29 202.7 -6.7 264 17-282 54-380 (461)
72 2xwt_C Thyrotropin receptor; s 99.9 2.8E-21 9.6E-26 164.6 13.6 203 32-262 23-237 (239)
73 4glp_A Monocyte differentiatio 99.9 2.5E-21 8.4E-26 171.5 13.5 219 41-262 65-305 (310)
74 1p9a_G Platelet glycoprotein I 99.9 2.5E-20 8.4E-25 163.3 19.2 193 41-262 11-206 (290)
75 2xwt_C Thyrotropin receptor; s 99.9 3.1E-21 1.1E-25 164.3 12.1 187 6-198 20-221 (239)
76 1z7x_W Ribonuclease inhibitor; 99.9 9.8E-23 3.3E-27 190.7 3.0 244 17-261 26-323 (461)
77 1p9a_G Platelet glycoprotein I 99.9 4.2E-20 1.4E-24 161.8 19.2 197 17-241 8-208 (290)
78 3rfs_A Internalin B, repeat mo 99.8 2.4E-20 8E-25 162.0 15.0 202 61-272 39-243 (272)
79 3rfs_A Internalin B, repeat mo 99.8 1.5E-20 5.2E-25 163.2 13.1 225 18-252 18-247 (272)
80 2ca6_A RAN GTPase-activating p 99.8 2.5E-22 8.5E-27 183.6 1.1 222 41-262 33-314 (386)
81 1h6u_A Internalin H; cell adhe 99.8 6.6E-20 2.2E-24 162.1 16.2 186 41-261 42-227 (308)
82 1h6u_A Internalin H; cell adhe 99.8 5.8E-20 2E-24 162.4 15.8 191 17-219 39-231 (308)
83 2ast_B S-phase kinase-associat 99.8 1.4E-21 4.9E-26 175.1 5.2 219 20-238 48-282 (336)
84 4ay9_X Follicle-stimulating ho 99.8 8E-20 2.7E-24 164.6 15.6 236 22-261 12-256 (350)
85 4glp_A Monocyte differentiatio 99.8 1.9E-20 6.4E-25 165.9 11.0 221 17-242 62-308 (310)
86 2ast_B S-phase kinase-associat 99.8 5.6E-22 1.9E-26 177.7 0.4 218 41-261 48-282 (336)
87 2ca6_A RAN GTPase-activating p 99.8 9.4E-22 3.2E-26 179.7 -0.7 241 42-283 11-314 (386)
88 3goz_A Leucine-rich repeat-con 99.8 3.4E-21 1.2E-25 174.4 1.8 239 24-262 3-295 (362)
89 3m19_A Variable lymphocyte rec 99.8 1.5E-18 5.1E-23 148.8 17.3 63 179-241 128-192 (251)
90 3ogk_B Coronatine-insensitive 99.8 5.2E-22 1.8E-26 191.5 -6.4 176 17-193 110-304 (592)
91 3m19_A Variable lymphocyte rec 99.8 2.5E-18 8.7E-23 147.4 17.0 175 20-219 15-193 (251)
92 4ay9_X Follicle-stimulating ho 99.8 2.5E-18 8.6E-23 154.8 15.4 233 43-280 12-254 (350)
93 3ogk_B Coronatine-insensitive 99.8 6.6E-22 2.3E-26 190.8 -9.4 148 21-170 140-304 (592)
94 3goz_A Leucine-rich repeat-con 99.8 5.6E-20 1.9E-24 166.4 3.1 240 44-283 2-295 (362)
95 3cvr_A Invasion plasmid antige 99.7 1.5E-17 5.1E-22 157.8 15.7 184 41-248 60-251 (571)
96 2p1m_B Transport inhibitor res 99.7 1.4E-20 4.7E-25 181.6 -5.5 127 17-143 103-243 (594)
97 2p1m_B Transport inhibitor res 99.7 1E-20 3.4E-25 182.6 -6.8 218 17-235 64-345 (594)
98 3cvr_A Invasion plasmid antige 99.7 5.3E-17 1.8E-21 154.0 17.8 180 63-266 59-245 (571)
99 1h6t_A Internalin B; cell adhe 99.7 2.4E-17 8.1E-22 144.4 13.6 183 44-261 28-210 (291)
100 1h6t_A Internalin B; cell adhe 99.7 1.9E-17 6.5E-22 145.0 12.8 187 21-242 26-214 (291)
101 2o6s_A Variable lymphocyte rec 99.7 6.3E-17 2.2E-21 134.5 13.1 68 179-252 121-190 (208)
102 4ezg_A Putative uncharacterize 99.7 3E-17 1E-21 135.3 10.9 148 41-193 45-192 (197)
103 2o6s_A Variable lymphocyte rec 99.7 8.7E-17 3E-21 133.7 12.9 174 23-227 11-188 (208)
104 1m9s_A Internalin B; cell inva 99.7 8.2E-17 2.8E-21 154.3 11.4 168 41-219 44-211 (605)
105 2v70_A SLIT-2, SLIT homolog 2 99.7 3.4E-16 1.2E-20 131.2 13.4 148 22-170 14-164 (220)
106 1dce_A Protein (RAB geranylger 99.7 2.7E-18 9.2E-23 163.5 0.5 105 161-268 443-549 (567)
107 2v9t_B SLIT homolog 2 protein 99.7 4.8E-16 1.6E-20 130.3 14.0 124 22-146 14-139 (220)
108 1m9s_A Internalin B; cell inva 99.7 5.3E-16 1.8E-20 148.6 15.8 192 41-244 22-213 (605)
109 4ezg_A Putative uncharacterize 99.7 1.5E-16 5.2E-21 131.0 9.1 150 86-241 43-194 (197)
110 2xot_A Amphoterin-induced prot 99.7 5E-16 1.7E-20 140.3 12.4 170 22-193 21-200 (361)
111 2v9t_B SLIT homolog 2 protein 99.7 1.5E-15 5.2E-20 127.2 14.2 150 43-217 14-164 (220)
112 1dce_A Protein (RAB geranylger 99.6 4.2E-18 1.4E-22 162.2 -2.6 194 60-258 346-567 (567)
113 1xeu_A Internalin C; cellular 99.6 2.5E-16 8.5E-21 135.7 8.8 167 63-241 19-185 (263)
114 2xot_A Amphoterin-induced prot 99.6 5.9E-16 2E-20 139.8 11.2 174 42-217 20-201 (361)
115 3e6j_A Variable lymphocyte rec 99.6 3.9E-15 1.3E-19 125.6 14.7 146 45-193 24-170 (229)
116 2v70_A SLIT-2, SLIT homolog 2 99.6 3.3E-15 1.1E-19 125.2 14.1 151 43-218 14-166 (220)
117 3e6j_A Variable lymphocyte rec 99.6 3.8E-15 1.3E-19 125.6 13.9 151 65-218 21-172 (229)
118 1xeu_A Internalin C; cellular 99.6 1.5E-15 5.1E-20 130.8 9.7 167 41-219 20-186 (263)
119 2ell_A Acidic leucine-rich nuc 99.6 3.6E-15 1.2E-19 119.5 9.5 132 135-268 24-163 (168)
120 2ell_A Acidic leucine-rich nuc 99.6 9.5E-15 3.2E-19 117.0 8.6 133 87-245 24-164 (168)
121 2je0_A Acidic leucine-rich nuc 99.5 6E-15 2.1E-19 115.6 7.0 124 135-259 17-148 (149)
122 1w8a_A SLIT protein; signaling 99.5 4.9E-14 1.7E-18 115.4 11.8 128 22-150 11-141 (192)
123 2wfh_A SLIT homolog 2 protein 99.5 9.4E-14 3.2E-18 113.7 12.7 125 22-147 13-138 (193)
124 2je0_A Acidic leucine-rich nuc 99.5 1.1E-13 3.9E-18 108.3 9.8 123 19-143 17-148 (149)
125 4b8c_D Glucose-repressible alc 99.5 7.8E-15 2.7E-19 143.9 2.8 120 49-172 210-329 (727)
126 4b8c_D Glucose-repressible alc 99.5 3.5E-14 1.2E-18 139.3 7.2 153 126-282 215-369 (727)
127 1w8a_A SLIT protein; signaling 99.5 2.7E-13 9.3E-18 110.9 10.9 128 43-172 11-139 (192)
128 1a9n_A U2A', U2A'; complex (nu 99.5 6.5E-14 2.2E-18 113.0 6.7 126 133-261 17-150 (176)
129 3sb4_A Hypothetical leucine ri 99.4 2E-13 6.9E-18 121.6 8.9 86 181-269 225-314 (329)
130 1a9n_A U2A', U2A'; complex (nu 99.4 5.5E-13 1.9E-17 107.5 9.8 130 12-146 12-151 (176)
131 2wfh_A SLIT homolog 2 protein 99.4 1.4E-12 4.7E-17 106.7 11.7 101 43-146 13-113 (193)
132 2o6r_A Variable lymphocyte rec 99.4 3.4E-12 1.2E-16 102.9 13.2 127 21-148 9-137 (177)
133 3sb4_A Hypothetical leucine ri 99.4 7E-13 2.4E-17 118.1 9.2 230 41-279 26-304 (329)
134 2o6r_A Variable lymphocyte rec 99.4 4E-12 1.4E-16 102.5 11.9 129 42-172 9-137 (177)
135 4fdw_A Leucine rich hypothetic 99.4 7.2E-11 2.5E-15 107.6 20.9 229 19-261 113-355 (401)
136 1ds9_A Outer arm dynein; leuci 99.3 8.4E-15 2.9E-19 120.6 -6.8 80 161-241 72-153 (198)
137 4fdw_A Leucine rich hypothetic 99.3 3.7E-10 1.3E-14 102.9 21.6 207 41-260 114-332 (401)
138 1ds9_A Outer arm dynein; leuci 99.3 1.9E-14 6.5E-19 118.5 -7.7 110 106-219 43-154 (198)
139 3g39_A Variable lymphocyte rec 99.2 5.5E-11 1.9E-15 95.1 10.7 102 21-123 11-114 (170)
140 2r9u_A Variable lymphocyte rec 99.2 1.1E-10 3.6E-15 93.7 10.7 101 22-123 15-117 (174)
141 3g39_A Variable lymphocyte rec 99.2 1.1E-10 3.8E-15 93.3 10.8 106 41-148 10-115 (170)
142 2r9u_A Variable lymphocyte rec 99.2 1.7E-10 5.9E-15 92.5 10.6 104 42-147 14-117 (174)
143 4fs7_A Uncharacterized protein 99.0 2.2E-09 7.5E-14 97.9 12.5 39 105-144 156-194 (394)
144 3un9_A NLR family member X1; l 99.0 1.2E-11 4.1E-16 111.6 -4.1 60 202-261 180-249 (372)
145 3un9_A NLR family member X1; l 99.0 2.3E-11 8E-16 109.7 -2.8 84 159-242 155-253 (372)
146 4fs7_A Uncharacterized protein 98.9 1.3E-07 4.6E-12 86.0 19.3 102 155-260 249-352 (394)
147 2ifg_A High affinity nerve gro 98.9 9.9E-09 3.4E-13 91.8 10.7 100 23-124 12-116 (347)
148 2ifg_A High affinity nerve gro 98.8 7.8E-09 2.7E-13 92.5 9.4 102 139-241 12-116 (347)
149 4gt6_A Cell surface protein; l 98.8 5.8E-07 2E-11 81.8 20.5 81 177-259 260-342 (394)
150 2ra8_A Uncharacterized protein 98.8 8.4E-09 2.9E-13 92.3 6.3 132 127-261 164-317 (362)
151 4gt6_A Cell surface protein; l 98.7 1.6E-06 5.5E-11 78.8 20.1 60 200-260 260-320 (394)
152 2ra8_A Uncharacterized protein 98.6 6.2E-09 2.1E-13 93.2 1.8 81 180-262 250-341 (362)
153 4h09_A Hypothetical leucine ri 98.6 7.2E-06 2.5E-10 74.0 21.0 103 156-260 214-319 (379)
154 3e4g_A ATP synthase subunit S, 98.5 6.9E-09 2.4E-13 82.0 -0.9 23 313-335 134-156 (176)
155 4h09_A Hypothetical leucine ri 98.5 9.8E-06 3.3E-10 73.2 19.5 247 9-268 57-348 (379)
156 3e4g_A ATP synthase subunit S, 98.5 1.4E-07 5E-12 74.4 5.4 87 64-150 62-154 (176)
157 1io0_A Tropomodulin; LRR prote 98.3 1.1E-07 3.6E-12 76.9 0.0 83 179-261 62-161 (185)
158 1io0_A Tropomodulin; LRR prote 98.2 8.5E-07 2.9E-11 71.5 4.7 105 41-145 37-161 (185)
159 3rw6_A Nuclear RNA export fact 97.9 3.5E-06 1.2E-10 71.6 2.2 77 180-257 168-257 (267)
160 3rw6_A Nuclear RNA export fact 97.8 3.6E-05 1.2E-09 65.4 7.0 37 86-122 169-207 (267)
161 1pgv_A TMD-1, tropomodulin TMD 96.8 0.00027 9.4E-09 56.7 0.6 34 204-237 97-135 (197)
162 1pgv_A TMD-1, tropomodulin TMD 96.8 0.0014 4.6E-08 52.7 4.6 104 41-144 42-166 (197)
163 3rfe_A Platelet glycoprotein I 96.7 0.0025 8.7E-08 47.6 5.7 52 23-75 12-67 (130)
164 3rfe_A Platelet glycoprotein I 96.2 0.01 3.5E-07 44.2 6.4 52 209-262 12-66 (130)
165 2lz0_A Uncharacterized protein 55.9 14 0.00046 25.6 3.9 44 52-96 8-52 (100)
166 2lz0_A Uncharacterized protein 41.5 63 0.0022 22.1 5.5 37 82-119 15-51 (100)
No 1
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=3.2e-30 Score=250.30 Aligned_cols=265 Identities=19% Similarity=0.249 Sum_probs=213.0
Q ss_pred cCCccC---CeeEEecCCccCcc------------------cCccCC--CCCCCCEEeCcCCcccccccccccCCCCCcE
Q 017542 35 FPRISG---NVVELNLMCTPIEE------------------VPLSIE--CLPNLETLEMSFCNSLKRLSTSICKLKSLRS 91 (369)
Q Consensus 35 ~~~~~~---~L~~L~l~~~~~~~------------------l~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 91 (369)
+|+.++ +|++|++++|.++. +|..+. .+++|++|++++|...+.+|..+.++++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 565554 89999999999987 899888 9999999999999888899988999999999
Q ss_pred EecCCCc-CCc-cCchhhhcc------Cccceeeccccccccccch--hhhcCCCCCeEeecCCCCCCCCCcccCCCcch
Q 017542 92 LDLSYCI-NLE-SFPEILEKM------ELLEEINLEEASNIKELPS--SIENLEGLKQLKLTGCTKLGSLPESLGNLKSL 161 (369)
Q Consensus 92 L~l~~~~-~~~-~~~~~~~~l------~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 161 (369)
|++++|. ... .+|..++.+ ++|++|++++|... .+|. .+..+++|++|++++|...+.+| .+..+++|
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L 355 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKL 355 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEE
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCC
Confidence 9999987 555 688888776 99999999987766 7887 89999999999999977665788 78889999
Q ss_pred hhhccCcccCCCCCcccccCCC-CcEEeecCCCCCCCCccccCCC--CCcEEeccCCCCcc-CCCCCC-------CCCCC
Q 017542 162 ERLHAGLLAIPQAPSSIVDLNK-LETLSLFECRGLVLPPLLSGLS--SLKKLELGDCEIME-IPPDIG-------CLSSL 230 (369)
Q Consensus 162 ~~L~l~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~-~~~~~~-------~~~~L 230 (369)
++|++++|.+..+|..+..+++ |++|++++|....+|..+...+ +|+.|++++|.+.+ .|..+. .+++|
T Consensus 356 ~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L 435 (636)
T 4eco_A 356 ASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV 435 (636)
T ss_dssp SEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCE
T ss_pred CEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCC
Confidence 9999999999988888999998 9999999999888888766554 89999999998877 555555 66788
Q ss_pred CEEEccCCcCCccchhh-ccCCcCcEecccCCcccccCCCCC-c----------ccceeccccccccccCCC-----chh
Q 017542 231 ESLNLSGNNIESLPTSI-SQLSRLRWLYLVNCVKLQSLPELP-L----------LLVMLGASDCKRLQFLPE-----LTS 293 (369)
Q Consensus 231 ~~L~l~~~~l~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~-~----------~L~~L~l~~c~~L~~l~~-----~~~ 293 (369)
++|++++|.++.+|..+ ..+++|++|++++| .++.+|... . +|+.|+++++. +..++. ..+
T Consensus 436 ~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~l~ 513 (636)
T 4eco_A 436 SSINLSNNQISKFPKELFSTGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDFRATTLP 513 (636)
T ss_dssp EEEECCSSCCCSCCTHHHHTTCCCSEEECCSS-CCSBCCSSSSEETTEECTTGGGCCEEECCSSC-CCBCCGGGSTTTCT
T ss_pred CEEECcCCccCcCCHHHHccCCCCCEEECCCC-CCCCcCHHHhccccccccccCCccEEECcCCc-CCccChhhhhccCC
Confidence 99999999888888654 45888888888888 566666421 1 78888887663 444442 224
Q ss_pred hhHHHhHHHH
Q 017542 294 CLEELDASIL 303 (369)
Q Consensus 294 ~l~~l~~~~~ 303 (369)
+++.|++.++
T Consensus 514 ~L~~L~Ls~N 523 (636)
T 4eco_A 514 YLVGIDLSYN 523 (636)
T ss_dssp TCCEEECCSS
T ss_pred CcCEEECCCC
Confidence 5555555443
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=1.3e-29 Score=251.27 Aligned_cols=249 Identities=24% Similarity=0.300 Sum_probs=164.4
Q ss_pred CeeEEecCCccCc-ccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeecc
Q 017542 41 NVVELNLMCTPIE-EVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLE 119 (369)
Q Consensus 41 ~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 119 (369)
+|++|++++|.++ .+|..+..+++|++|++++|...+.+|..+..+++|++|++++|.....+|..+..+++|++|+++
T Consensus 395 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 474 (768)
T 3rgz_A 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474 (768)
T ss_dssp CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred CccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEec
Confidence 4556666555555 455556666677777777666555666666666777777777766666666667777777777777
Q ss_pred ccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCC-CCCcccccCCCCcEEeecCCCC-CCC
Q 017542 120 EASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIP-QAPSSIVDLNKLETLSLFECRG-LVL 197 (369)
Q Consensus 120 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~l~~~~~-~~~ 197 (369)
+|...+.+|..+..+++|++|++++|...+.+|..++.+++|++|++++|.+. .+|..+..+++|+.|++++|.. +.+
T Consensus 475 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i 554 (768)
T 3rgz_A 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBC
T ss_pred CCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcC
Confidence 66666566666777777777777776666666666777777777777777766 5566677777777777776652 122
Q ss_pred Cc----------------------------------------------------------------------cccCCCCC
Q 017542 198 PP----------------------------------------------------------------------LLSGLSSL 207 (369)
Q Consensus 198 ~~----------------------------------------------------------------------~~~~~~~L 207 (369)
|. .+..+++|
T Consensus 555 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L 634 (768)
T 3rgz_A 555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 634 (768)
T ss_dssp CGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCC
T ss_pred ChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccc
Confidence 22 22334567
Q ss_pred cEEeccCCCCcc-CCCCCCCCCCCCEEEccCCcCC-ccchhhccCCcCcEecccCCcccccCCCC---Ccccceeccccc
Q 017542 208 KKLELGDCEIME-IPPDIGCLSSLESLNLSGNNIE-SLPTSISQLSRLRWLYLVNCVKLQSLPEL---PLLLVMLGASDC 282 (369)
Q Consensus 208 ~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~---~~~L~~L~l~~c 282 (369)
+.|++++|.+.+ +|..++.++.|++|++++|.++ .+|..++.+++|++|++++|.--..+|.. .++|+.|+++++
T Consensus 635 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 635 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714 (768)
T ss_dssp CEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS
T ss_pred cEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCC
Confidence 777777777775 6666777777777777777777 67777777777777777777433355543 355777777776
Q ss_pred cccccCC
Q 017542 283 KRLQFLP 289 (369)
Q Consensus 283 ~~L~~l~ 289 (369)
+--..+|
T Consensus 715 ~l~g~iP 721 (768)
T 3rgz_A 715 NLSGPIP 721 (768)
T ss_dssp EEEEECC
T ss_pred cccccCC
Confidence 5333444
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=1e-29 Score=246.80 Aligned_cols=216 Identities=14% Similarity=0.162 Sum_probs=101.6
Q ss_pred CeeEEecCCccCcccCc--cCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCc-cceee
Q 017542 41 NVVELNLMCTPIEEVPL--SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMEL-LEEIN 117 (369)
Q Consensus 41 ~L~~L~l~~~~~~~l~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~ 117 (369)
+|++|++++|.++.+|. .+..+++|++|++++|...+.+| .+..+++|++|++++|... .+|..+..+++ |++|+
T Consensus 306 ~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~ 383 (636)
T 4eco_A 306 KIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLS 383 (636)
T ss_dssp TCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEE
T ss_pred CCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEE
Confidence 44444444444444444 44444444444444444333444 3444444444444444322 34444444444 55555
Q ss_pred ccccccccccchhhhcCC--CCCeEeecCCCCCCCCCcccC-------CCcchhhhccCcccCCCCCcccc-cCCCCcEE
Q 017542 118 LEEASNIKELPSSIENLE--GLKQLKLTGCTKLGSLPESLG-------NLKSLERLHAGLLAIPQAPSSIV-DLNKLETL 187 (369)
Q Consensus 118 l~~~~~~~~~~~~~~~l~--~L~~L~l~~~~~~~~~~~~~~-------~l~~L~~L~l~~~~~~~~~~~l~-~~~~L~~L 187 (369)
+++|... .+|..+...+ +|++|++++|...+..|..+. .+++|++|++++|.+..+|..+. .+++|++|
T Consensus 384 Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L 462 (636)
T 4eco_A 384 FAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSI 462 (636)
T ss_dssp CCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEE
T ss_pred ccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEE
Confidence 5444322 3443333322 455555555444444444343 44455555555555554444322 24555555
Q ss_pred eecCCCCCCCCccccC--------CCCCcEEeccCCCCccCCCCCC--CCCCCCEEEccCCcCCccchhhccCCcCcEec
Q 017542 188 SLFECRGLVLPPLLSG--------LSSLKKLELGDCEIMEIPPDIG--CLSSLESLNLSGNNIESLPTSISQLSRLRWLY 257 (369)
Q Consensus 188 ~l~~~~~~~~~~~~~~--------~~~L~~L~l~~~~~~~~~~~~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~ 257 (369)
++++|....+|..... +++|+.|++++|.+..++..+. .+++|++|++++|.++.+|..+..+++|++|+
T Consensus 463 ~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~ 542 (636)
T 4eco_A 463 NLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFG 542 (636)
T ss_dssp ECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEE
T ss_pred ECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEE
Confidence 5555554444432111 1155555555555555554443 55555555555555555555555555555555
Q ss_pred cc
Q 017542 258 LV 259 (369)
Q Consensus 258 l~ 259 (369)
++
T Consensus 543 Ls 544 (636)
T 4eco_A 543 IR 544 (636)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=7.2e-29 Score=246.02 Aligned_cols=268 Identities=22% Similarity=0.253 Sum_probs=219.6
Q ss_pred CCCccEEecCCCCCccccCCccC---CeeEEecCCccCc-ccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEe
Q 017542 18 FISSIKIDCYKCVNLREFPRISG---NVVELNLMCTPIE-EVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLD 93 (369)
Q Consensus 18 ~~~L~~L~l~~~~~l~~~~~~~~---~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 93 (369)
+++|++|++++|.....+|..+. +|++|++++|.++ .+|..+..+++|++|++++|...+.+|..+..+++|++|+
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence 66788888888874446666554 8889999888887 6677788888999999998887778888888888999999
Q ss_pred cCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCC-
Q 017542 94 LSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIP- 172 (369)
Q Consensus 94 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~- 172 (369)
+++|.....+|..+..+++|++|++++|...+.+|.++..+++|++|++++|...+.+|..+..+++|+.|++++|.+.
T Consensus 473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 552 (768)
T 3rgz_A 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCC
Confidence 9888877778888888899999999888877788888888889999999888777778888888888888888888654
Q ss_pred CCCc----------------------------------------------------------------------ccccCC
Q 017542 173 QAPS----------------------------------------------------------------------SIVDLN 182 (369)
Q Consensus 173 ~~~~----------------------------------------------------------------------~l~~~~ 182 (369)
.+|. .+..++
T Consensus 553 ~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~ 632 (768)
T 3rgz_A 553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632 (768)
T ss_dssp BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSB
T ss_pred cCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccc
Confidence 2332 234457
Q ss_pred CCcEEeecCCCC-CCCCccccCCCCCcEEeccCCCCcc-CCCCCCCCCCCCEEEccCCcCC-ccchhhccCCcCcEeccc
Q 017542 183 KLETLSLFECRG-LVLPPLLSGLSSLKKLELGDCEIME-IPPDIGCLSSLESLNLSGNNIE-SLPTSISQLSRLRWLYLV 259 (369)
Q Consensus 183 ~L~~L~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~ 259 (369)
+|+.|++++|.. +.+|..++.+++|+.|++++|.+.+ +|..++.+++|++|++++|+++ .+|..++.+++|++|+++
T Consensus 633 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls 712 (768)
T 3rgz_A 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712 (768)
T ss_dssp CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECC
T ss_pred cccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECc
Confidence 899999999995 4788899999999999999999996 8888999999999999999999 889999999999999999
Q ss_pred CCcccccCCCC--Ccccceecccccccc
Q 017542 260 NCVKLQSLPEL--PLLLVMLGASDCKRL 285 (369)
Q Consensus 260 ~~~~l~~~~~~--~~~L~~L~l~~c~~L 285 (369)
+|.--..+|.. +.++....+.+++.|
T Consensus 713 ~N~l~g~iP~~~~~~~~~~~~~~gN~~L 740 (768)
T 3rgz_A 713 NNNLSGPIPEMGQFETFPPAKFLNNPGL 740 (768)
T ss_dssp SSEEEEECCSSSSGGGSCGGGGCSCTEE
T ss_pred CCcccccCCCchhhccCCHHHhcCCchh
Confidence 99655666653 344555555555544
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=4.4e-29 Score=247.13 Aligned_cols=263 Identities=17% Similarity=0.224 Sum_probs=203.6
Q ss_pred cCCccC---CeeEEecCCccCcc------------------cCccCC--CCCCCCEEeCcCCcccccccccccCCCCCcE
Q 017542 35 FPRISG---NVVELNLMCTPIEE------------------VPLSIE--CLPNLETLEMSFCNSLKRLSTSICKLKSLRS 91 (369)
Q Consensus 35 ~~~~~~---~L~~L~l~~~~~~~------------------l~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 91 (369)
+|..++ +|++|++++|.++. +|..+. .+++|++|++++|...+.+|..+.++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 555444 89999999999987 888877 9999999999999888888988999999999
Q ss_pred EecCCCc-CCc-cCchhhhccC-------ccceeeccccccccccch--hhhcCCCCCeEeecCCCCCCCCCcccCCCcc
Q 017542 92 LDLSYCI-NLE-SFPEILEKME-------LLEEINLEEASNIKELPS--SIENLEGLKQLKLTGCTKLGSLPESLGNLKS 160 (369)
Q Consensus 92 L~l~~~~-~~~-~~~~~~~~l~-------~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 160 (369)
|++++|. ... .+|..++.++ +|++|++++|... .+|. .+..+++|+.|++++|... .+| .++.+++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~ 596 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVK 596 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCc
Confidence 9999987 554 5777776665 9999999987766 7887 8899999999999997655 777 7889999
Q ss_pred hhhhccCcccCCCCCcccccCCC-CcEEeecCCCCCCCCccccCCC--CCcEEeccCCCCccCCC----CCC--CCCCCC
Q 017542 161 LERLHAGLLAIPQAPSSIVDLNK-LETLSLFECRGLVLPPLLSGLS--SLKKLELGDCEIMEIPP----DIG--CLSSLE 231 (369)
Q Consensus 161 L~~L~l~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~----~~~--~~~~L~ 231 (369)
|+.|++++|.+..+|..+..+++ |+.|++++|....+|..+...+ +|+.|++++|.+.+.+. .+. ..++|+
T Consensus 597 L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~ 676 (876)
T 4ecn_A 597 LTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAS 676 (876)
T ss_dssp ESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEE
T ss_pred ceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcC
Confidence 99999999999988888888888 9999999999878887766654 38899999888866322 122 345788
Q ss_pred EEEccCCcCCccchhh-ccCCcCcEecccCCcccccCCCCC-----------cccceeccccccccccCCCc-----hhh
Q 017542 232 SLNLSGNNIESLPTSI-SQLSRLRWLYLVNCVKLQSLPELP-----------LLLVMLGASDCKRLQFLPEL-----TSC 294 (369)
Q Consensus 232 ~L~l~~~~l~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~-----------~~L~~L~l~~c~~L~~l~~~-----~~~ 294 (369)
+|++++|.++.+|..+ ..+++|+.|++++| .++.+|... ++|+.|++++| ++..++.. .++
T Consensus 677 ~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~ 754 (876)
T 4ecn_A 677 TVTLSYNEIQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPY 754 (876)
T ss_dssp EEECCSSCCCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTT
T ss_pred EEEccCCcCCccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCC-CCccchHHhhhccCCC
Confidence 8888888888777655 46788888888887 566666421 16777877776 44444422 245
Q ss_pred hHHHhHHH
Q 017542 295 LEELDASI 302 (369)
Q Consensus 295 l~~l~~~~ 302 (369)
|+.|++.+
T Consensus 755 L~~L~Ls~ 762 (876)
T 4ecn_A 755 LSNMDVSY 762 (876)
T ss_dssp CCEEECCS
T ss_pred cCEEEeCC
Confidence 55555544
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=1.1e-27 Score=223.86 Aligned_cols=272 Identities=19% Similarity=0.165 Sum_probs=169.9
Q ss_pred cCCccCCCCCCCCCccEEecCCCCCcccc-CCccC---CeeEEecCCccCc-cc-CccCCCCCCCCEEeCcCCccccccc
Q 017542 7 ESLRCFPQNIHFISSIKIDCYKCVNLREF-PRISG---NVVELNLMCTPIE-EV-PLSIECLPNLETLEMSFCNSLKRLS 80 (369)
Q Consensus 7 ~~l~~~p~~~~~~~L~~L~l~~~~~l~~~-~~~~~---~L~~L~l~~~~~~-~l-~~~~~~~~~L~~L~l~~~~~~~~~~ 80 (369)
.+++.+|. -.++|++|++++|. +..+ |..+. +|++|+++++.+. .+ +..+..+++|++|++++|......|
T Consensus 20 ~~l~~lp~--l~~~l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~ 96 (455)
T 3v47_A 20 RGLHQVPE--LPAHVNYVDLSLNS-IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLET 96 (455)
T ss_dssp SCCSSCCC--CCTTCCEEECCSSC-CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECT
T ss_pred CCcccCCC--CCCccCEEEecCCc-cCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccCh
Confidence 35667776 24678888888887 5554 44444 7888888877775 44 3457778888888888877666667
Q ss_pred ccccCCCCCcEEecCCCcCCccCchh--hhccCccceeeccccccccccchh-hhcCCCCCeEeecCCCCCCCCCcccC-
Q 017542 81 TSICKLKSLRSLDLSYCINLESFPEI--LEKMELLEEINLEEASNIKELPSS-IENLEGLKQLKLTGCTKLGSLPESLG- 156 (369)
Q Consensus 81 ~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~- 156 (369)
..+.++++|++|++++|......+.. +..+++|++|++++|......|.. +..+++|++|++++|......+..+.
T Consensus 97 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 176 (455)
T 3v47_A 97 GAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLN 176 (455)
T ss_dssp TTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGG
T ss_pred hhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhc
Confidence 77788888888888887665544433 777888888888877765555544 67788888888887665444333332
Q ss_pred ---------------------------------CCcchhhhccCcccCCCC-Ccc-------------------------
Q 017542 157 ---------------------------------NLKSLERLHAGLLAIPQA-PSS------------------------- 177 (369)
Q Consensus 157 ---------------------------------~l~~L~~L~l~~~~~~~~-~~~------------------------- 177 (369)
.+++|++|++++|.+... +..
T Consensus 177 l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 256 (455)
T 3v47_A 177 FQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF 256 (455)
T ss_dssp GTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT
T ss_pred cccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc
Confidence 224566666666654310 000
Q ss_pred ------------cc--cCCCCcEEeecCCCCCC-CCccccCCCCCcEEeccCCCCccC-CCCCCCCCCCCEEEccCCcCC
Q 017542 178 ------------IV--DLNKLETLSLFECRGLV-LPPLLSGLSSLKKLELGDCEIMEI-PPDIGCLSSLESLNLSGNNIE 241 (369)
Q Consensus 178 ------------l~--~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~ 241 (369)
+. ..++|+.|++++|.... .+..+..+++|+.|++++|.+.++ +..+..+++|++|++++|.++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 336 (455)
T 3v47_A 257 GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG 336 (455)
T ss_dssp TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccC
Confidence 00 11356666666665333 344566666677777777666663 345566666677777666666
Q ss_pred cc-chhhccCCcCcEecccCCcccccC-CC---CCcccceeccccc
Q 017542 242 SL-PTSISQLSRLRWLYLVNCVKLQSL-PE---LPLLLVMLGASDC 282 (369)
Q Consensus 242 ~~-~~~~~~~~~L~~L~l~~~~~l~~~-~~---~~~~L~~L~l~~c 282 (369)
.+ +..++.+++|++|++++| .++.+ +. ..++|++|+++++
T Consensus 337 ~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N 381 (455)
T 3v47_A 337 SIDSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTN 381 (455)
T ss_dssp EECGGGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcChhHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCC
Confidence 44 345566666666666666 34433 22 2255666666654
No 7
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.7e-27 Score=213.46 Aligned_cols=271 Identities=19% Similarity=0.238 Sum_probs=216.4
Q ss_pred CCcCCccCCCCC--CCC-----CccEEecCCCCCccccCCccC-CeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCcc
Q 017542 5 GCESLRCFPQNI--HFI-----SSIKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNS 75 (369)
Q Consensus 5 ~c~~l~~~p~~~--~~~-----~L~~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~ 75 (369)
+...++++|..+ .++ +++.++++++. +..+|..+. ++++|+++++.++.++. .+..+++|++|++++|..
T Consensus 12 ~~~~l~~lp~~~~~~cp~~c~c~l~~l~~~~~~-l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 90 (332)
T 2ft3_A 12 GIPDLDSLPPTYSAMCPFGCHCHLRVVQCSDLG-LKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90 (332)
T ss_dssp -------------CCCCSSCEEETTEEECCSSC-CSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCCccccCCCcccCCCCCCCcccCCEEECCCCC-ccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCcc
Confidence 345566777655 333 69999999988 889987665 99999999999998754 789999999999999877
Q ss_pred cccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCC--CCCCc
Q 017542 76 LKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKL--GSLPE 153 (369)
Q Consensus 76 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~ 153 (369)
....+..+.++++|++|++++|... .+|..+. ++|++|++++|......+..+..+++|++|++++|... ...+.
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 167 (332)
T 2ft3_A 91 SKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPG 167 (332)
T ss_dssp CEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTT
T ss_pred CccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcc
Confidence 7666788999999999999997654 5555443 89999999988766555567889999999999997653 24556
Q ss_pred ccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCC-ccccCCCCCcEEeccCCCCccCCC-CCCCCCCCC
Q 017542 154 SLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLP-PLLSGLSSLKKLELGDCEIMEIPP-DIGCLSSLE 231 (369)
Q Consensus 154 ~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~ 231 (369)
.+..+ +|++|++++|.+..+|..+. ++|++|++++|....++ ..+..+++|+.|++++|.+.+++. .+..+++|+
T Consensus 168 ~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 244 (332)
T 2ft3_A 168 AFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLR 244 (332)
T ss_dssp SSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCC
T ss_pred cccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCC
Confidence 67777 99999999999999887664 79999999999977665 578899999999999999998654 578899999
Q ss_pred EEEccCCcCCccchhhccCCcCcEecccCCcccccCCCC----------Ccccceecccccc
Q 017542 232 SLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPEL----------PLLLVMLGASDCK 283 (369)
Q Consensus 232 ~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~----------~~~L~~L~l~~c~ 283 (369)
+|++++|.++.+|..+..+++|++|++++| .++.++.. ..+++.+++.+++
T Consensus 245 ~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 245 ELHLDNNKLSRVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp EEECCSSCCCBCCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred EEECCCCcCeecChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCc
Confidence 999999999999999999999999999998 57766531 2457788888776
No 8
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=2.2e-27 Score=213.96 Aligned_cols=270 Identities=23% Similarity=0.284 Sum_probs=213.5
Q ss_pred CCCCcCCccCCCCCCCCCccEEecCCCCCccccCCccC--CeeEEecCCccCcccCccCCCCCCCCEEeCcCCccccccc
Q 017542 3 MAGCESLRCFPQNIHFISSIKIDCYKCVNLREFPRISG--NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLS 80 (369)
Q Consensus 3 l~~c~~l~~~p~~~~~~~L~~L~l~~~~~l~~~~~~~~--~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~ 80 (369)
+.++ .+..+|....+++|++|++++|. +..++.... +|++|+++++.++.++ .+..+++|++|++++|... .++
T Consensus 51 l~~~-~i~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~-~~~ 126 (347)
T 4fmz_A 51 VAGE-KVASIQGIEYLTNLEYLNLNGNQ-ITDISPLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNIS-DIS 126 (347)
T ss_dssp CCSS-CCCCCTTGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCC-CCG
T ss_pred EeCC-ccccchhhhhcCCccEEEccCCc-cccchhhhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCccc-Cch
Confidence 4454 46677765589999999999997 777776332 9999999999999876 4889999999999997654 444
Q ss_pred ccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcc
Q 017542 81 TSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKS 160 (369)
Q Consensus 81 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 160 (369)
. +..+++|++|++++|......+. +..+++|++|++++|.... .+. +..+++|++|++++|.. ..++. +..+++
T Consensus 127 ~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~-~~~-~~~l~~L~~L~l~~n~l-~~~~~-~~~l~~ 200 (347)
T 4fmz_A 127 P-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKD-VTP-IANLTDLYSLSLNYNQI-EDISP-LASLTS 200 (347)
T ss_dssp G-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCSEEECTTSCC-CCCGG-GGGCTT
T ss_pred h-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCC-chh-hccCCCCCEEEccCCcc-ccccc-ccCCCc
Confidence 4 78899999999999876665554 8899999999999776544 333 77899999999999754 44443 778889
Q ss_pred hhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcC
Q 017542 161 LERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNI 240 (369)
Q Consensus 161 L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l 240 (369)
|+.+++++|.+..++. +..+++|++|++++|....++. +..+++|++|++++|.+..++ .+..+++|++|++++|.+
T Consensus 201 L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l 277 (347)
T 4fmz_A 201 LHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQI 277 (347)
T ss_dssp CCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCC
T ss_pred cceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCCh-hHhcCCCcCEEEccCCcc
Confidence 9999999998887655 7788999999999998777776 788899999999999888763 477888999999999988
Q ss_pred CccchhhccCCcCcEecccCCcccccCC-C---CCcccceeccccccccccC
Q 017542 241 ESLPTSISQLSRLRWLYLVNCVKLQSLP-E---LPLLLVMLGASDCKRLQFL 288 (369)
Q Consensus 241 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~---~~~~L~~L~l~~c~~L~~l 288 (369)
+.++ .+..+++|++|++++|. ++..+ . ..++|+.|++++|+ +..+
T Consensus 278 ~~~~-~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~-l~~~ 326 (347)
T 4fmz_A 278 SDIS-VLNNLSQLNSLFLNNNQ-LGNEDMEVIGGLTNLTTLFLSQNH-ITDI 326 (347)
T ss_dssp CCCG-GGGGCTTCSEEECCSSC-CCGGGHHHHHTCTTCSEEECCSSS-CCCC
T ss_pred CCCh-hhcCCCCCCEEECcCCc-CCCcChhHhhccccCCEEEccCCc-cccc
Confidence 8875 57888999999999984 44433 1 34778888888886 4443
No 9
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=1.2e-27 Score=215.80 Aligned_cols=300 Identities=20% Similarity=0.228 Sum_probs=235.0
Q ss_pred cCCCCCCCCCccEEecCCCCCccccCCc--cCCeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCC
Q 017542 11 CFPQNIHFISSIKIDCYKCVNLREFPRI--SGNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKS 88 (369)
Q Consensus 11 ~~p~~~~~~~L~~L~l~~~~~l~~~~~~--~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 88 (369)
.++....+++|+.|+++++. +..++.. +.+|++|+++++.++.++. +..+++|++|++++|... .++ .+..+++
T Consensus 36 ~~~~~~~l~~L~~L~l~~~~-i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~-~~~-~~~~l~~ 111 (347)
T 4fmz_A 36 DVVTQEELESITKLVVAGEK-VASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKIT-DIS-ALQNLTN 111 (347)
T ss_dssp SEECHHHHTTCSEEECCSSC-CCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-CCG-GGTTCTT
T ss_pred CcccchhcccccEEEEeCCc-cccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCccc-Cch-HHcCCCc
Confidence 33444478999999999988 7787753 3399999999999998877 889999999999998544 444 4888999
Q ss_pred CcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCc
Q 017542 89 LRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGL 168 (369)
Q Consensus 89 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 168 (369)
|++|++++|.... ++. +..+++|++|++++|.....++. +..+++|++|++++|... ..+. +..+++|++|++++
T Consensus 112 L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~-~~~~-~~~l~~L~~L~l~~ 186 (347)
T 4fmz_A 112 LRELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVK-DVTP-IANLTDLYSLSLNY 186 (347)
T ss_dssp CSEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCC-CCGG-GGGCTTCSEEECTT
T ss_pred CCEEECcCCcccC-chh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcC-Cchh-hccCCCCCEEEccC
Confidence 9999999986544 444 88999999999998877766554 889999999999997644 3333 78899999999999
Q ss_pred ccCCCCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccchhhc
Q 017542 169 LAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSIS 248 (369)
Q Consensus 169 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~ 248 (369)
|.+..++. +..+++|+.+++++|....++. +..+++|++|++++|.+..++. +..+++|++|++++|.++.++ .+.
T Consensus 187 n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~ 262 (347)
T 4fmz_A 187 NQIEDISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDIN-AVK 262 (347)
T ss_dssp SCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGT
T ss_pred Cccccccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCCh-hHh
Confidence 99988765 8889999999999999777665 7788999999999999998765 888999999999999999875 688
Q ss_pred cCCcCcEecccCCcccccCCC--CCcccceeccccccccccCC----CchhhhHHHhHHHHHhhhccccccccCCCCCcE
Q 017542 249 QLSRLRWLYLVNCVKLQSLPE--LPLLLVMLGASDCKRLQFLP----ELTSCLEELDASILQALSNRTGERLSKHMSPVQ 322 (369)
Q Consensus 249 ~~~~L~~L~l~~~~~l~~~~~--~~~~L~~L~l~~c~~L~~l~----~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~ 322 (369)
.+++|++|++++| .++.++. ..++|+.|++++|+ +.... ...++++.|++.+++ ++... .+.....+..
T Consensus 263 ~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~--~~~~l~~L~~ 337 (347)
T 4fmz_A 263 DLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNNQ-LGNEDMEVIGGLTNLTTLFLSQNH-ITDIR--PLASLSKMDS 337 (347)
T ss_dssp TCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSC-CCGGGHHHHHTCTTCSEEECCSSS-CCCCG--GGGGCTTCSE
T ss_pred cCCCcCEEEccCC-ccCCChhhcCCCCCCEEECcCCc-CCCcChhHhhccccCCEEEccCCc-ccccc--Chhhhhccce
Confidence 9999999999999 6666653 34789999999884 33222 123456666666554 22221 1333444556
Q ss_pred EEecCc
Q 017542 323 LIFANC 328 (369)
Q Consensus 323 ~~~~~c 328 (369)
+.+.+|
T Consensus 338 L~l~~N 343 (347)
T 4fmz_A 338 ADFANQ 343 (347)
T ss_dssp ESSSCC
T ss_pred eehhhh
Confidence 666665
No 10
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=3.4e-28 Score=228.76 Aligned_cols=273 Identities=21% Similarity=0.196 Sum_probs=166.8
Q ss_pred cCCccCCCCCCCCCccEEecCCCCCccccC-CccC---CeeEEecCCccCccc-CccCCCCCCCCEEeCcCCcccccccc
Q 017542 7 ESLRCFPQNIHFISSIKIDCYKCVNLREFP-RISG---NVVELNLMCTPIEEV-PLSIECLPNLETLEMSFCNSLKRLST 81 (369)
Q Consensus 7 ~~l~~~p~~~~~~~L~~L~l~~~~~l~~~~-~~~~---~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~ 81 (369)
.+++.+|..+ .+++++|++++|. +..++ ..+. +|++|++++|.++.+ |..+..+++|++|++++|......+.
T Consensus 21 ~~l~~ip~~~-~~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 98 (477)
T 2id5_A 21 KRFVAVPEGI-PTETRLLDLGKNR-IKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLG 98 (477)
T ss_dssp CCCSSCCSCC-CTTCSEEECCSSC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTT
T ss_pred CCcCcCCCCC-CCCCcEEECCCCc-cceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcc
Confidence 3566677655 4578888888877 55553 3333 788888888877765 55677888888888888654433334
Q ss_pred cccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcch
Q 017542 82 SICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSL 161 (369)
Q Consensus 82 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 161 (369)
.+.++++|++|++++|......+..+..+++|++|++++|......+..+..+++|++|++++|......+..+..+++|
T Consensus 99 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 178 (477)
T 2id5_A 99 VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGL 178 (477)
T ss_dssp SSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTC
T ss_pred cccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCC
Confidence 56777888888888877666666777778888888888776655556667777778888877765443333446667777
Q ss_pred hhhccCcccCCCCC-cccccCCCCcEEeecCC------------------------CCCCCCc-cccCCCCCcEEeccCC
Q 017542 162 ERLHAGLLAIPQAP-SSIVDLNKLETLSLFEC------------------------RGLVLPP-LLSGLSSLKKLELGDC 215 (369)
Q Consensus 162 ~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~------------------------~~~~~~~-~~~~~~~L~~L~l~~~ 215 (369)
+.|++++|.+..++ ..+..+++|+.|++++| ....++. .+..+++|+.|++++|
T Consensus 179 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 258 (477)
T 2id5_A 179 IVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN 258 (477)
T ss_dssp CEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSS
T ss_pred cEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCC
Confidence 77777777665443 24455555555555554 4333332 3444555555555555
Q ss_pred CCccCC-CCCCCCCCCCEEEccCCcCCcc-chhhccCCcCcEecccCCcccccCCC----CCcccceeccccc
Q 017542 216 EIMEIP-PDIGCLSSLESLNLSGNNIESL-PTSISQLSRLRWLYLVNCVKLQSLPE----LPLLLVMLGASDC 282 (369)
Q Consensus 216 ~~~~~~-~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~----~~~~L~~L~l~~c 282 (369)
.+..++ ..+..+++|++|++++|.++.+ +..+..+++|++|++++| .++.++. ..++|+.|++.++
T Consensus 259 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 259 PISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp CCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSS
T ss_pred cCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCC
Confidence 555532 2344555555555555555533 344455555555555555 3444432 1234555555444
No 11
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=2.2e-27 Score=223.29 Aligned_cols=258 Identities=20% Similarity=0.229 Sum_probs=185.1
Q ss_pred CCCCcCCccCCC-CC-CCCCccEEecCCCCCcccc-CCccC---CeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCcc
Q 017542 3 MAGCESLRCFPQ-NI-HFISSIKIDCYKCVNLREF-PRISG---NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNS 75 (369)
Q Consensus 3 l~~c~~l~~~p~-~~-~~~~L~~L~l~~~~~l~~~-~~~~~---~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~ 75 (369)
+.++ +++.+++ .+ .+++|++|++++|. +..+ |..+. +|++|++++|.++.++. .+..+++|++|++++|..
T Consensus 39 L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i 116 (477)
T 2id5_A 39 LGKN-RIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI 116 (477)
T ss_dssp CCSS-CCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCC
T ss_pred CCCC-ccceECHhHccCCCCCCEEECCCCc-cCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCcc
Confidence 3443 3555543 34 77888888888887 5554 44443 78888888888877765 367788888888888766
Q ss_pred cccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCC----------
Q 017542 76 LKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGC---------- 145 (369)
Q Consensus 76 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~---------- 145 (369)
....+..+..+++|++|++++|......+..+..+++|++|++++|......+..+..+++|+.|++++|
T Consensus 117 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~ 196 (477)
T 2id5_A 117 VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSF 196 (477)
T ss_dssp CEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCS
T ss_pred ccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhc
Confidence 6665666777777777777776655555556666777777777665544333334555555555555554
Q ss_pred --------------CCCCCCCcccCCCcchhhhccCcccCCCCC-cccccCCCCcEEeecCCCCCCCC-ccccCCCCCcE
Q 017542 146 --------------TKLGSLPESLGNLKSLERLHAGLLAIPQAP-SSIVDLNKLETLSLFECRGLVLP-PLLSGLSSLKK 209 (369)
Q Consensus 146 --------------~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~ 209 (369)
.....++.......+|++|++++|.+..++ ..+..+++|+.|++++|....++ ..+..+++|+.
T Consensus 197 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 276 (477)
T 2id5_A 197 KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQE 276 (477)
T ss_dssp CSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCE
T ss_pred ccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCE
Confidence 433333333333446777777777777776 35778999999999999976665 46788999999
Q ss_pred EeccCCCCccC-CCCCCCCCCCCEEEccCCcCCccch-hhccCCcCcEecccCCc
Q 017542 210 LELGDCEIMEI-PPDIGCLSSLESLNLSGNNIESLPT-SISQLSRLRWLYLVNCV 262 (369)
Q Consensus 210 L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~ 262 (369)
|++++|.+..+ +..+..+++|++|++++|.++.++. .+..+++|++|++++|+
T Consensus 277 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 277 IQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp EECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred EECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCC
Confidence 99999999984 6678899999999999999998875 46889999999999995
No 12
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=4.4e-27 Score=210.52 Aligned_cols=257 Identities=19% Similarity=0.196 Sum_probs=216.5
Q ss_pred CccEEecCCCCCccccCCccC-CeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCC
Q 017542 20 SSIKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYC 97 (369)
Q Consensus 20 ~L~~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 97 (369)
+++.++++++. +..+|..++ .++.|+++++.++.++. .+..+++|++|++++|......|..+..+++|++|++++|
T Consensus 32 ~l~~l~~~~~~-l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 32 HLRVVQCSDLG-LEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp ETTEEECTTSC-CCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred CCeEEEecCCC-ccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 69999999988 888987665 99999999999998876 6889999999999998777666888999999999999997
Q ss_pred cCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCC--CCCcccCCCcchhhhccCcccCCCCC
Q 017542 98 INLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLG--SLPESLGNLKSLERLHAGLLAIPQAP 175 (369)
Q Consensus 98 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~ 175 (369)
... .+|..+. ++|++|++++|......+..+..+++|+.|++++|.... ..+..+..+++|++|++++|.+..+|
T Consensus 111 ~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~ 187 (330)
T 1xku_A 111 QLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP 187 (330)
T ss_dssp CCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC
T ss_pred cCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCC
Confidence 644 5555443 799999999887766666778999999999999976643 45567888999999999999999888
Q ss_pred cccccCCCCcEEeecCCCCCCC-CccccCCCCCcEEeccCCCCccCCC-CCCCCCCCCEEEccCCcCCccchhhccCCcC
Q 017542 176 SSIVDLNKLETLSLFECRGLVL-PPLLSGLSSLKKLELGDCEIMEIPP-DIGCLSSLESLNLSGNNIESLPTSISQLSRL 253 (369)
Q Consensus 176 ~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L 253 (369)
..+. ++|++|++++|....+ +..+..+++|+.|++++|.+.+++. .+..+++|++|++++|.++.+|..+..+++|
T Consensus 188 ~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L 265 (330)
T 1xku_A 188 QGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYI 265 (330)
T ss_dssp SSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSC
T ss_pred cccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCc
Confidence 7664 8999999999997665 5678899999999999999998544 6788999999999999999999999999999
Q ss_pred cEecccCCcccccCCCC----------Ccccceecccccc
Q 017542 254 RWLYLVNCVKLQSLPEL----------PLLLVMLGASDCK 283 (369)
Q Consensus 254 ~~L~l~~~~~l~~~~~~----------~~~L~~L~l~~c~ 283 (369)
++|++++| .++.++.. ..+++.+++.+.+
T Consensus 266 ~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 266 QVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp CEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred CEEECCCC-cCCccChhhcCCcccccccccccceEeecCc
Confidence 99999999 57766531 2456677777665
No 13
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=2.1e-28 Score=242.33 Aligned_cols=245 Identities=16% Similarity=0.190 Sum_probs=129.3
Q ss_pred CCCCC---CCCCccEEecCCCCCccccCCccC---CeeEEecCCcc-Ccc--cCccC-------CCCCCCCEEeCcCCcc
Q 017542 12 FPQNI---HFISSIKIDCYKCVNLREFPRISG---NVVELNLMCTP-IEE--VPLSI-------ECLPNLETLEMSFCNS 75 (369)
Q Consensus 12 ~p~~~---~~~~L~~L~l~~~~~l~~~~~~~~---~L~~L~l~~~~-~~~--l~~~~-------~~~~~L~~L~l~~~~~ 75 (369)
+|..+ .+++|++|++++|.....+|..+. +|++|++++|. ++. +|..+ ..+++|++|++++|..
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 55554 466677777766665556665443 66666666665 542 44432 2334666666666554
Q ss_pred cccccc--cccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCC-CCeEeecCCCCCCCCC
Q 017542 76 LKRLST--SICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEG-LKQLKLTGCTKLGSLP 152 (369)
Q Consensus 76 ~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~ 152 (369)
. .+|. .+.++++|+.|++++|... .+| .++.+++|++|++++|... .+|..+..+++ |+.|++++|.. ..+|
T Consensus 561 ~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L-~~lp 635 (876)
T 4ecn_A 561 E-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKL-KYIP 635 (876)
T ss_dssp C-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCC-CSCC
T ss_pred C-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCC-CcCc
Confidence 4 5555 5666666666666665544 555 5666666666666655544 55555666666 66666666543 2555
Q ss_pred cccCCCcc--hhhhccCcccCCCCCcc----cc--cCCCCcEEeecCCCCCCCCccc-cCCCCCcEEeccCCCCccCCCC
Q 017542 153 ESLGNLKS--LERLHAGLLAIPQAPSS----IV--DLNKLETLSLFECRGLVLPPLL-SGLSSLKKLELGDCEIMEIPPD 223 (369)
Q Consensus 153 ~~~~~l~~--L~~L~l~~~~~~~~~~~----l~--~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~ 223 (369)
..+..++. |+.|++++|.+.+.+.. +. ..++|+.|++++|....+|..+ ..+++|+.|++++|.+..++..
T Consensus 636 ~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~ 715 (876)
T 4ecn_A 636 NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPEN 715 (876)
T ss_dssp SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTT
T ss_pred hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChH
Confidence 44444332 55555555555432111 11 2234555555555544444322 2444555555555555444433
Q ss_pred CCCC--------CCCCEEEccCCcCCccchhhc--cCCcCcEecccCC
Q 017542 224 IGCL--------SSLESLNLSGNNIESLPTSIS--QLSRLRWLYLVNC 261 (369)
Q Consensus 224 ~~~~--------~~L~~L~l~~~~l~~~~~~~~--~~~~L~~L~l~~~ 261 (369)
.... ++|++|+|++|.++.+|..+. .+++|+.|++++|
T Consensus 716 ~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N 763 (876)
T 4ecn_A 716 SLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYN 763 (876)
T ss_dssp SSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSS
T ss_pred HhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCC
Confidence 2221 145555555555555544443 4555555555554
No 14
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=2.5e-27 Score=217.02 Aligned_cols=240 Identities=16% Similarity=0.134 Sum_probs=127.8
Q ss_pred CCCCccEEecCCCCCccccCCcc----CCeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCcccccccccccCCCCCcE
Q 017542 17 HFISSIKIDCYKCVNLREFPRIS----GNVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRS 91 (369)
Q Consensus 17 ~~~~L~~L~l~~~~~l~~~~~~~----~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 91 (369)
.++++++++++++. ++.+|... .+|++|+++++.++.++. .+..+++|++|++++|......+..+.++++|++
T Consensus 43 ~l~~l~~l~l~~~~-l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCE-ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCc-hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 45666777776666 66666432 366777776666665543 5666667777777766554444455666667777
Q ss_pred EecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCc------------
Q 017542 92 LDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLK------------ 159 (369)
Q Consensus 92 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~------------ 159 (369)
|++++|......+..+..+++|++|++++|......+..+..+++|++|++++|.... ++ +..++
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~--~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD--LSLIPSLFHANVSYNLL 198 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-CC--GGGCTTCSEEECCSSCC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-cc--cccccccceeecccccc
Confidence 7776654443333334666677777776665544444556666666766666654322 11 11122
Q ss_pred ----------------------------chhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCC-CccccCCCCCcEE
Q 017542 160 ----------------------------SLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVL-PPLLSGLSSLKKL 210 (369)
Q Consensus 160 ----------------------------~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L 210 (369)
+|+.|++++|.+... ..+..+++|++|++++|....+ +..+..+++|+.|
T Consensus 199 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 277 (390)
T 3o6n_A 199 STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 277 (390)
T ss_dssp SEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEE
T ss_pred cccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEE
Confidence 333333333333332 2344444555555555543322 3344445555555
Q ss_pred eccCCCCccCCCCCCCCCCCCEEEccCCcCCccchhhccCCcCcEecccCC
Q 017542 211 ELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNC 261 (369)
Q Consensus 211 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~ 261 (369)
++++|.+..++.....+++|++|++++|.++.+|..+..+++|++|++++|
T Consensus 278 ~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N 328 (390)
T 3o6n_A 278 YISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN 328 (390)
T ss_dssp ECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSS
T ss_pred ECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCC
Confidence 555555544444444445555555555555555444444555555555554
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=2.1e-27 Score=225.82 Aligned_cols=137 Identities=17% Similarity=0.132 Sum_probs=101.2
Q ss_pred CCCCCcCCccCCCCCCCCCccEEecCCCCCccccC-Ccc---CCeeEEecCCccCccc-CccCCCCCCCCEEeCcCCccc
Q 017542 2 IMAGCESLRCFPQNIHFISSIKIDCYKCVNLREFP-RIS---GNVVELNLMCTPIEEV-PLSIECLPNLETLEMSFCNSL 76 (369)
Q Consensus 2 ~l~~c~~l~~~p~~~~~~~L~~L~l~~~~~l~~~~-~~~---~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~ 76 (369)
+++++ +++.+|..+. ++|++|++++|. +..++ ..+ .+|++|++++|.++.+ |..+..+++|++|++++|...
T Consensus 6 ~ls~n-~l~~ip~~~~-~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 82 (520)
T 2z7x_B 6 DRSKN-GLIHVPKDLS-QKTTILNISQNY-ISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82 (520)
T ss_dssp ECTTS-CCSSCCCSCC-TTCSEEECCSSC-CCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC
T ss_pred ecCCC-Cccccccccc-ccccEEECCCCc-ccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee
Confidence 34554 5778887765 889999999988 66654 333 3899999999998876 567888999999999997554
Q ss_pred ccccccccCCCCCcEEecCCCcCCc-cCchhhhccCccceeeccccccccccchhhhcCCCC--CeEeecCCCC
Q 017542 77 KRLSTSICKLKSLRSLDLSYCINLE-SFPEILEKMELLEEINLEEASNIKELPSSIENLEGL--KQLKLTGCTK 147 (369)
Q Consensus 77 ~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~ 147 (369)
.+|.. .+++|++|++++|.... .+|..++.+++|++|++++|.... ..+..+++| ++|++++|..
T Consensus 83 -~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 83 -KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp -EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred -ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccc
Confidence 66665 78999999999987665 467888889999999988776543 234445555 6666666544
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=5.4e-28 Score=231.37 Aligned_cols=140 Identities=16% Similarity=0.159 Sum_probs=86.7
Q ss_pred CCccCCCCCCCCCccEEecCCCCCcccc-CCccC---CeeEEecCCccCcccC-ccCCCCCCCCEEeCcCCccccccccc
Q 017542 8 SLRCFPQNIHFISSIKIDCYKCVNLREF-PRISG---NVVELNLMCTPIEEVP-LSIECLPNLETLEMSFCNSLKRLSTS 82 (369)
Q Consensus 8 ~l~~~p~~~~~~~L~~L~l~~~~~l~~~-~~~~~---~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~ 82 (369)
+++++|..+ .++|++|++++|. +..+ +..+. +|++|++++|.++.++ ..+..+++|++|++++|...+..+..
T Consensus 16 ~l~~ip~~~-~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 93 (549)
T 2z81_A 16 SFTSIPSGL-TAAMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSW 93 (549)
T ss_dssp CCSSCCSCC-CTTCCEEECCSSC-CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHH
T ss_pred ccccccccC-CCCccEEECcCCc-cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHH
Confidence 566677655 3667777777777 5544 33333 7777777777777554 45677777777777776655544445
Q ss_pred ccCCCCCcEEecCCCcCCc-cCchhhhccCccceeeccccccccccc-hhhhcCCCCCeEeecCCCCCC
Q 017542 83 ICKLKSLRSLDLSYCINLE-SFPEILEKMELLEEINLEEASNIKELP-SSIENLEGLKQLKLTGCTKLG 149 (369)
Q Consensus 83 ~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~ 149 (369)
++++++|++|++++|.... ..+..++.+++|++|++++|...+.++ ..+..+++|++|++++|...+
T Consensus 94 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 94 FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp HTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred hccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence 6677777777777765443 234556666777777776665444433 345555666666665554433
No 17
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=7.6e-27 Score=226.02 Aligned_cols=244 Identities=19% Similarity=0.144 Sum_probs=127.9
Q ss_pred CCCCccEEecCCCCCcccc-CCccC---CeeEEecCCccCccc-CccCCCCCCCCEEeCcCCcccccccccccCCCCCcE
Q 017542 17 HFISSIKIDCYKCVNLREF-PRISG---NVVELNLMCTPIEEV-PLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRS 91 (369)
Q Consensus 17 ~~~~L~~L~l~~~~~l~~~-~~~~~---~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 91 (369)
.+++|++|++++|. +..+ |..+. +|++|++++|.++.+ |..+..+++|++|++++|......+..+..+++|++
T Consensus 55 ~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~ 133 (606)
T 3t6q_A 55 RLINLTFLDLTRCQ-IYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLES 133 (606)
T ss_dssp TCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCE
T ss_pred cCccceEEECCCCc-cceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccE
Confidence 55566666666655 3332 33332 566666666655543 334555666666666665444333344555566666
Q ss_pred EecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCC--eEeecCCCCCC--------------------
Q 017542 92 LDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLK--QLKLTGCTKLG-------------------- 149 (369)
Q Consensus 92 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~--~L~l~~~~~~~-------------------- 149 (369)
|++++|.........+..+++|++|++++|......+..+..+++|+ .|++++|...+
T Consensus 134 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~ 213 (606)
T 3t6q_A 134 LYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ 213 (606)
T ss_dssp EECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCS
T ss_pred EECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCch
Confidence 66666544332112222356666666665544444444455555555 44444433221
Q ss_pred -------------------------------------------------------CCCcccCCCcchhhhccCcccCCCC
Q 017542 150 -------------------------------------------------------SLPESLGNLKSLERLHAGLLAIPQA 174 (369)
Q Consensus 150 -------------------------------------------------------~~~~~~~~l~~L~~L~l~~~~~~~~ 174 (369)
..+..+..+++|++|++++|.+..+
T Consensus 214 ~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l 293 (606)
T 3t6q_A 214 NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSEL 293 (606)
T ss_dssp CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCC
T ss_pred hHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCC
Confidence 1112244555666666666666666
Q ss_pred CcccccCCCCcEEeecCCCCCCC-CccccCCCCCcEEeccCCCCcc-CCC-CCCCCCCCCEEEccCCcCCcc---chhhc
Q 017542 175 PSSIVDLNKLETLSLFECRGLVL-PPLLSGLSSLKKLELGDCEIME-IPP-DIGCLSSLESLNLSGNNIESL---PTSIS 248 (369)
Q Consensus 175 ~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~-~~~-~~~~~~~L~~L~l~~~~l~~~---~~~~~ 248 (369)
|..+..+++|++|++++|....+ +..+..+++|+.|++++|.+.. ++. .+..+++|++|++++|.++.+ +..++
T Consensus 294 p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 373 (606)
T 3t6q_A 294 PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR 373 (606)
T ss_dssp CSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTT
T ss_pred ChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcc
Confidence 66666666666666666664443 2345555555555555555542 322 245556666666666665533 34455
Q ss_pred cCCcCcEecccCC
Q 017542 249 QLSRLRWLYLVNC 261 (369)
Q Consensus 249 ~~~~L~~L~l~~~ 261 (369)
.+++|++|++++|
T Consensus 374 ~l~~L~~L~l~~n 386 (606)
T 3t6q_A 374 NLSHLQSLNLSYN 386 (606)
T ss_dssp TCTTCCEEECCSC
T ss_pred cCCCCCEEECCCC
Confidence 5666666666665
No 18
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=2.4e-28 Score=216.93 Aligned_cols=247 Identities=21% Similarity=0.247 Sum_probs=192.4
Q ss_pred CCeeEEecCCccCc---ccCccCCCCCCCCEEeCcC-CcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccce
Q 017542 40 GNVVELNLMCTPIE---EVPLSIECLPNLETLEMSF-CNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEE 115 (369)
Q Consensus 40 ~~L~~L~l~~~~~~---~l~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 115 (369)
++++.|+++++.++ .+|..+..+++|++|++++ |...+.+|..+.++++|++|++++|.....+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 47888888888876 4777788888888888885 6666677777888888888888887766677888888888888
Q ss_pred eeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCc-chhhhccCcccCC-CCCcccccCCCCcEEeecCCC
Q 017542 116 INLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLK-SLERLHAGLLAIP-QAPSSIVDLNKLETLSLFECR 193 (369)
Q Consensus 116 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~l~~~~ 193 (369)
|++++|.....+|..+..+++|++|++++|...+.+|..+..++ +|++|++++|.+. .+|..+..++ |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 88887776667777888888888888888766557777777777 8888888888877 5667777776 8888888888
Q ss_pred CC-CCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCC-ccchhhccCCcCcEecccCCcccccCCCC-
Q 017542 194 GL-VLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIE-SLPTSISQLSRLRWLYLVNCVKLQSLPEL- 270 (369)
Q Consensus 194 ~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~- 270 (369)
.. ..+..+..+++|+.|++++|.+...+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.--..+|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~ 288 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCc
Confidence 44 4556778888888888888888765444677788888888888888 77888888888888888888433355543
Q ss_pred -Ccccceecccccccccc
Q 017542 271 -PLLLVMLGASDCKRLQF 287 (369)
Q Consensus 271 -~~~L~~L~l~~c~~L~~ 287 (369)
.++|+.+++.+++.+..
T Consensus 289 ~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 289 NLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp TGGGSCGGGTCSSSEEES
T ss_pred cccccChHHhcCCCCccC
Confidence 36677788887776554
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=1.4e-27 Score=228.42 Aligned_cols=327 Identities=16% Similarity=0.136 Sum_probs=187.7
Q ss_pred CCCCCcCCccCC-CCC-CCCCccEEecCCCCCccccC-CccC---CeeEEecCCccCcccCcc-CCCCCCCCEEeCcCCc
Q 017542 2 IMAGCESLRCFP-QNI-HFISSIKIDCYKCVNLREFP-RISG---NVVELNLMCTPIEEVPLS-IECLPNLETLEMSFCN 74 (369)
Q Consensus 2 ~l~~c~~l~~~p-~~~-~~~~L~~L~l~~~~~l~~~~-~~~~---~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~~~ 74 (369)
++.++. ++.++ ..+ .+++|++|++++|. +..++ ..+. +|++|++++|.++.++.. +..+++|++|++++|.
T Consensus 32 ~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 109 (549)
T 2z81_A 32 DLSFNK-ITYIGHGDLRACANLQVLILKSSR-INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP 109 (549)
T ss_dssp ECCSSC-CCEECSSTTSSCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCC
T ss_pred ECcCCc-cCccChhhhhcCCcccEEECCCCC-cCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCc
Confidence 345553 55554 344 78889999998887 55554 4443 888888888888877654 7888888888888876
Q ss_pred ccc-cccccccCCCCCcEEecCCCcCCccCc-hhhhccCccceeeccccccccccchhhh--------------------
Q 017542 75 SLK-RLSTSICKLKSLRSLDLSYCINLESFP-EILEKMELLEEINLEEASNIKELPSSIE-------------------- 132 (369)
Q Consensus 75 ~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~-------------------- 132 (369)
... ..+..+.++++|++|++++|.....++ ..+..+++|++|++++|......+..+.
T Consensus 110 l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 189 (549)
T 2z81_A 110 YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLE 189 (549)
T ss_dssp CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHH
T ss_pred ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccch
Confidence 554 345567778888888888876444444 5677777777777777665544444333
Q ss_pred ----cCCCCCeEeecCCCCCCCC--Ccc----------------------------------------------------
Q 017542 133 ----NLEGLKQLKLTGCTKLGSL--PES---------------------------------------------------- 154 (369)
Q Consensus 133 ----~l~~L~~L~l~~~~~~~~~--~~~---------------------------------------------------- 154 (369)
.+++|++|++++|...+.. +..
T Consensus 190 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~ 269 (549)
T 2z81_A 190 IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDF 269 (549)
T ss_dssp HHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCC
T ss_pred hhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccc
Confidence 3456666666654432210 000
Q ss_pred -------cCC-----------------------------CcchhhhccCcccCCCCCccc-ccCCCCcEEeecCCCCCC-
Q 017542 155 -------LGN-----------------------------LKSLERLHAGLLAIPQAPSSI-VDLNKLETLSLFECRGLV- 196 (369)
Q Consensus 155 -------~~~-----------------------------l~~L~~L~l~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~- 196 (369)
+.. .++|+.+++++|.+..+|..+ ..+++|+.|++++|....
T Consensus 270 ~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~ 349 (549)
T 2z81_A 270 NPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEE 349 (549)
T ss_dssp CCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHH
T ss_pred cccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccc
Confidence 000 123344444444444455444 356777777777776432
Q ss_pred C---CccccCCCCCcEEeccCCCCccCC---CCCCCCCCCCEEEccCCcCCccchhhccCCcCcEecccCCcccccCC--
Q 017542 197 L---PPLLSGLSSLKKLELGDCEIMEIP---PDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLP-- 268 (369)
Q Consensus 197 ~---~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~-- 268 (369)
+ +..++.+++|+.|++++|.+.+++ ..+..+++|++|++++|.++.+|..++.+++|++|++++| .++.++
T Consensus 350 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N-~l~~l~~~ 428 (549)
T 2z81_A 350 YLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSST-GIRVVKTC 428 (549)
T ss_dssp HHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTS-CCSCCCTT
T ss_pred cccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCC-Ccccccch
Confidence 1 122455666666666666665532 2245566666666666666666665556666666666665 344433
Q ss_pred -------------------CCCcccceeccccccccccCCCc--hhhhHHHhHHHHHhhhccccccccCCCCCcEEEecC
Q 017542 269 -------------------ELPLLLVMLGASDCKRLQFLPEL--TSCLEELDASILQALSNRTGERLSKHMSPVQLIFAN 327 (369)
Q Consensus 269 -------------------~~~~~L~~L~l~~c~~L~~l~~~--~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 327 (369)
...++|+.|+++++ +++.++.. .++++.|+++++ .++......+.....+..+.+.+
T Consensus 429 ~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~ 506 (549)
T 2z81_A 429 IPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPDASLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHT 506 (549)
T ss_dssp SCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCCGGGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCS
T ss_pred hcCCceEEECCCCChhhhcccCChhcEEECCCC-ccCcCCCcccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecC
Confidence 23344555555544 33334322 234555555443 22222222334444556777777
Q ss_pred ccCcch
Q 017542 328 CLKLNE 333 (369)
Q Consensus 328 c~~l~~ 333 (369)
++-..+
T Consensus 507 N~~~~~ 512 (549)
T 2z81_A 507 NPWDCS 512 (549)
T ss_dssp SCBCCC
T ss_pred CCccCC
Confidence 754443
No 20
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=7.2e-28 Score=213.79 Aligned_cols=247 Identities=18% Similarity=0.193 Sum_probs=216.1
Q ss_pred CCccEEecCCCCCcc--ccCCccC---CeeEEecC-CccCc-ccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcE
Q 017542 19 ISSIKIDCYKCVNLR--EFPRISG---NVVELNLM-CTPIE-EVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRS 91 (369)
Q Consensus 19 ~~L~~L~l~~~~~l~--~~~~~~~---~L~~L~l~-~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 91 (369)
.+++.|+++++.... .+|..+. +|++|+++ ++.+. .+|..+..+++|++|++++|...+.+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 579999999998444 6776655 99999998 47776 78888999999999999998887788888999999999
Q ss_pred EecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCC-CCCeEeecCCCCCCCCCcccCCCcchhhhccCccc
Q 017542 92 LDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLE-GLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLA 170 (369)
Q Consensus 92 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 170 (369)
|++++|.....+|..+..+++|++|++++|.....+|..+..++ +|++|++++|...+..|..+..++ |++|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 99999987778899999999999999999887778888899998 999999999877767888888887 9999999999
Q ss_pred CC-CCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCcc-CCCCCCCCCCCCEEEccCCcCC-ccchhh
Q 017542 171 IP-QAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIME-IPPDIGCLSSLESLNLSGNNIE-SLPTSI 247 (369)
Q Consensus 171 ~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~-~~~~~~ 247 (369)
+. ..+..+..+++|+.|++++|.....+..+..+++|++|++++|.+.+ +|..+..+++|++|++++|.++ .+|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~- 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG- 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-
Confidence 88 45677889999999999999966555557888999999999999985 7888899999999999999998 66654
Q ss_pred ccCCcCcEecccCCcccccC
Q 017542 248 SQLSRLRWLYLVNCVKLQSL 267 (369)
Q Consensus 248 ~~~~~L~~L~l~~~~~l~~~ 267 (369)
..+++|+.+++++|+.+...
T Consensus 288 ~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 288 GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp TTGGGSCGGGTCSSSEEEST
T ss_pred ccccccChHHhcCCCCccCC
Confidence 88999999999999866654
No 21
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=5.5e-27 Score=218.42 Aligned_cols=267 Identities=18% Similarity=0.168 Sum_probs=147.7
Q ss_pred CCCCccEEecCCCCCccccCCcc--CCeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEec
Q 017542 17 HFISSIKIDCYKCVNLREFPRIS--GNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDL 94 (369)
Q Consensus 17 ~~~~L~~L~l~~~~~l~~~~~~~--~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 94 (369)
.+++|++|++++|. +..+|... .+|++|++++|.++.++ +..+++|++|++++|...+ ++ ++.+++|++|++
T Consensus 40 ~l~~L~~L~Ls~n~-l~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 40 QLATLTSLDCHNSS-ITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNC 113 (457)
T ss_dssp HHTTCCEEECCSSC-CCCCTTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEEC
T ss_pred HcCCCCEEEccCCC-cccChhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEEC
Confidence 45666677776665 55555322 26666677666666654 5666666777776655333 22 556666666766
Q ss_pred CCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCC
Q 017542 95 SYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQA 174 (369)
Q Consensus 95 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 174 (369)
++|.... ++ ++.+++|++|++++|.... ++ +..+++|++|++++|...+.+ .+..+++|++|++++|.++.+
T Consensus 114 ~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l 185 (457)
T 3bz5_A 114 DTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL 185 (457)
T ss_dssp CSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCC
T ss_pred CCCcCCe-ec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcccee
Confidence 6654333 33 5666666666666554333 22 455666666666666555544 255666666666666666665
Q ss_pred CcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccchhhccCCc--
Q 017542 175 PSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSR-- 252 (369)
Q Consensus 175 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~-- 252 (369)
+ +..+++|+.|++++|....++ +..+++|+.|++++|.+.+++ +..+++|++|++++|.++.++ .+.+++
T Consensus 186 ~--l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~--~~~l~~L~ 257 (457)
T 3bz5_A 186 D--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELD--VSTLSKLT 257 (457)
T ss_dssp C--CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCC
T ss_pred c--cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcC--HHHCCCCC
Confidence 4 555666666666666655442 555666666666666666654 455666666666666665444 222222
Q ss_pred --------CcEecccCCcccccCCC-CCcccceeccccccccccCCCchhhhHHHhHHHHHh
Q 017542 253 --------LRWLYLVNCVKLQSLPE-LPLLLVMLGASDCKRLQFLPELTSCLEELDASILQA 305 (369)
Q Consensus 253 --------L~~L~l~~~~~l~~~~~-~~~~L~~L~l~~c~~L~~l~~~~~~l~~l~~~~~~~ 305 (369)
|+.|++++|..+..+|. ..++|+.|++++|+.+..++...+.++.+++..+++
T Consensus 258 ~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~ 319 (457)
T 3bz5_A 258 TLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPK 319 (457)
T ss_dssp EEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTT
T ss_pred EEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhccc
Confidence 23334444433333321 124455555555554444444444444444444433
No 22
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=9.8e-27 Score=224.49 Aligned_cols=264 Identities=16% Similarity=0.102 Sum_probs=155.3
Q ss_pred CCCCccEEecCCCCCccccCCc----cCCeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCcccccccccccCCCCCcE
Q 017542 17 HFISSIKIDCYKCVNLREFPRI----SGNVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRS 91 (369)
Q Consensus 17 ~~~~L~~L~l~~~~~l~~~~~~----~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 91 (369)
.+++++.++++++. +..+|.. +.+|++|+++++.++.++. .+..+++|++|++++|......+..++.+++|++
T Consensus 49 ~l~~l~~l~l~~~~-l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCE-ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCC-CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 44555666666555 5555542 1256666666666655443 4555666666666665544444444555666666
Q ss_pred EecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCccc----------------
Q 017542 92 LDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESL---------------- 155 (369)
Q Consensus 92 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~---------------- 155 (369)
|++++|......+..++.+++|++|++++|......+..+..+++|++|++++|.........+
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l 207 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTL 207 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEE
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccc
Confidence 6666654443333334556666666666555444444455556666666665543322110000
Q ss_pred CC---------------------CcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCC-CccccCCCCCcEEecc
Q 017542 156 GN---------------------LKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVL-PPLLSGLSSLKKLELG 213 (369)
Q Consensus 156 ~~---------------------l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~ 213 (369)
.. .++|+.|++++|.+... ..+..+++|+.|++++|....+ |..+..+++|+.|+++
T Consensus 208 ~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 286 (597)
T 3oja_B 208 AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 286 (597)
T ss_dssp ECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECT
T ss_pred cCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECC
Confidence 01 12355555555555543 4566677777777777775443 5567777778888888
Q ss_pred CCCCccCCCCCCCCCCCCEEEccCCcCCccchhhccCCcCcEecccCCcccccCC-CCCcccceecccccc
Q 017542 214 DCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLP-ELPLLLVMLGASDCK 283 (369)
Q Consensus 214 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~L~~L~l~~c~ 283 (369)
+|.+.+++.....+++|++|++++|.++.+|..+..+++|++|++++|. ++.++ ..+++|+.|++++++
T Consensus 287 ~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 287 NNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS-IVTLKLSTHHTLKNLTLSHND 356 (597)
T ss_dssp TSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSC-CCCCCCCTTCCCSEEECCSSC
T ss_pred CCCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCC-CCCcChhhcCCCCEEEeeCCC
Confidence 8777777666666778888888888777777777777788888887773 44443 234667777776654
No 23
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=1.6e-26 Score=223.80 Aligned_cols=260 Identities=22% Similarity=0.207 Sum_probs=163.7
Q ss_pred CccEEecCCCCCccccCCc-cC---CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecC
Q 017542 20 SSIKIDCYKCVNLREFPRI-SG---NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLS 95 (369)
Q Consensus 20 ~L~~L~l~~~~~l~~~~~~-~~---~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 95 (369)
+|+.|++++|. +..++.. +. +|++|+++++.++.+|..+..+++|++|++++|......+..+..+++|++|+++
T Consensus 255 ~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHY-FFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCC-CSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCc-cCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 57777777776 5554432 32 7777777777777777667777777777777766555555566667777777777
Q ss_pred CCcCCccCc-hhhhccCccceeecccccccccc--chhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCC
Q 017542 96 YCINLESFP-EILEKMELLEEINLEEASNIKEL--PSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIP 172 (369)
Q Consensus 96 ~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 172 (369)
+|.....++ ..+..+++|++|++++|...... +..+..+++|++|++++|......+..+..+++|++|++++|.+.
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence 765554443 34667777777777766554433 455667777777777776555555556666777777777777665
Q ss_pred CCC--cccccCCCCcEEeecCCCCCCC-CccccCCCCCcEEeccCCCCcc--CC--CCCCCCCCCCEEEccCCcCCcc-c
Q 017542 173 QAP--SSIVDLNKLETLSLFECRGLVL-PPLLSGLSSLKKLELGDCEIME--IP--PDIGCLSSLESLNLSGNNIESL-P 244 (369)
Q Consensus 173 ~~~--~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~--~~--~~~~~~~~L~~L~l~~~~l~~~-~ 244 (369)
... ..+..+++|+.|++++|..... +..+..+++|++|++++|.+.+ ++ ..+..+++|++|++++|.++.+ |
T Consensus 414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 493 (606)
T 3t6q_A 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ 493 (606)
T ss_dssp CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECT
T ss_pred CcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccCh
Confidence 432 2366667777777777764433 4456667777777777777654 11 3356667777777777777644 4
Q ss_pred hhhccCCcCcEecccCCcccccC-CCC---Ccccceeccccc
Q 017542 245 TSISQLSRLRWLYLVNCVKLQSL-PEL---PLLLVMLGASDC 282 (369)
Q Consensus 245 ~~~~~~~~L~~L~l~~~~~l~~~-~~~---~~~L~~L~l~~c 282 (369)
..++.+++|++|++++|. ++.+ +.. .++| .|+++++
T Consensus 494 ~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~L-~L~L~~N 533 (606)
T 3t6q_A 494 HAFTSLKMMNHVDLSHNR-LTSSSIEALSHLKGI-YLNLASN 533 (606)
T ss_dssp TTTTTCTTCCEEECCSSC-CCGGGGGGGTTCCSC-EEECCSS
T ss_pred hhhccccCCCEEECCCCc-cCcCChhHhCccccc-EEECcCC
Confidence 556677777777777763 3332 222 2344 5555555
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=2e-26 Score=215.43 Aligned_cols=280 Identities=19% Similarity=0.136 Sum_probs=217.0
Q ss_pred CCCCCcCCccC-CCCC-CCCCccEEecCCCCCccccC-CccC---CeeEEecCCccCccc-CccCCCCCCCCEEeCcCCc
Q 017542 2 IMAGCESLRCF-PQNI-HFISSIKIDCYKCVNLREFP-RISG---NVVELNLMCTPIEEV-PLSIECLPNLETLEMSFCN 74 (369)
Q Consensus 2 ~l~~c~~l~~~-p~~~-~~~~L~~L~l~~~~~l~~~~-~~~~---~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~ 74 (369)
+++++ .++.+ |..+ .+++|++|++++|.....++ ..+. +|++|++++|.++.+ |..+..+++|++|++++|.
T Consensus 36 ~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 114 (455)
T 3v47_A 36 DLSLN-SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCN 114 (455)
T ss_dssp ECCSS-CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSC
T ss_pred EecCC-ccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCC
Confidence 34554 45555 5555 89999999999998544654 3333 999999999999866 6678999999999999987
Q ss_pred cccccccc--ccCCCCCcEEecCCCcCCccCchh-hhccCccceeeccccccccccchhhhc------------------
Q 017542 75 SLKRLSTS--ICKLKSLRSLDLSYCINLESFPEI-LEKMELLEEINLEEASNIKELPSSIEN------------------ 133 (369)
Q Consensus 75 ~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~------------------ 133 (369)
..+..+.. +..+++|++|++++|......|.. +..+++|++|++++|......+..+..
T Consensus 115 l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~ 194 (455)
T 3v47_A 115 LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQD 194 (455)
T ss_dssp CBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTT
T ss_pred CCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccc
Confidence 76655543 788999999999998777665654 789999999999988766554444433
Q ss_pred ----------------CCCCCeEeecCCCCCCCCCcc-------------------------------------cC--CC
Q 017542 134 ----------------LEGLKQLKLTGCTKLGSLPES-------------------------------------LG--NL 158 (369)
Q Consensus 134 ----------------l~~L~~L~l~~~~~~~~~~~~-------------------------------------~~--~l 158 (369)
+++|++|++++|......+.. +. ..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (455)
T 3v47_A 195 MNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEA 274 (455)
T ss_dssp CSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTT
T ss_pred cchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccc
Confidence 356888888876543211110 11 12
Q ss_pred cchhhhccCcccCCCC-CcccccCCCCcEEeecCCCCCCC-CccccCCCCCcEEeccCCCCccC-CCCCCCCCCCCEEEc
Q 017542 159 KSLERLHAGLLAIPQA-PSSIVDLNKLETLSLFECRGLVL-PPLLSGLSSLKKLELGDCEIMEI-PPDIGCLSSLESLNL 235 (369)
Q Consensus 159 ~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l 235 (369)
++|+++++++|.+... +..+..+++|++|++++|....+ +..+..+++|+.|++++|.+.++ +..+..+++|++|++
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 5788999999988854 56788899999999999997665 45788999999999999999885 556788999999999
Q ss_pred cCCcCCcc-chhhccCCcCcEecccCCcccccCCC----CCcccceecccccc
Q 017542 236 SGNNIESL-PTSISQLSRLRWLYLVNCVKLQSLPE----LPLLLVMLGASDCK 283 (369)
Q Consensus 236 ~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~----~~~~L~~L~l~~c~ 283 (369)
++|.++.+ |..+..+++|++|++++| .++.++. ..++|+.|++++++
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCcccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCC
Confidence 99999966 678899999999999998 6777664 34688999998875
No 25
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=4.2e-27 Score=210.13 Aligned_cols=218 Identities=28% Similarity=0.422 Sum_probs=154.1
Q ss_pred CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccc
Q 017542 41 NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEE 120 (369)
Q Consensus 41 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 120 (369)
+++.|+++++.++.+|..+..+++|++|++++|... .+|..+..+++|++|++++|... .+|..+..+++|++|++++
T Consensus 82 ~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 82 GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRA 159 (328)
T ss_dssp TCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEE
T ss_pred ceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCC
Confidence 777888888888878777777888888888886655 67777777888888888886554 6677778888888888887
Q ss_pred cccccccchhhhc---------CCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecC
Q 017542 121 ASNIKELPSSIEN---------LEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFE 191 (369)
Q Consensus 121 ~~~~~~~~~~~~~---------l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~ 191 (369)
|...+.+|..+.. +++|++|++++|. ++.+|..+..+++|++|++++|.+..++..+..+++|++|++++
T Consensus 160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~ 238 (328)
T 4fcg_A 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRG 238 (328)
T ss_dssp ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTT
T ss_pred CCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcC
Confidence 7777766665443 6777777777754 33666666667777777777777776666666777777777777
Q ss_pred CC-CCCCCccccCCCCCcEEeccCCCCcc-CCCCCCCCCCCCEEEccCCcCC-ccchhhccCCcCcEecccCC
Q 017542 192 CR-GLVLPPLLSGLSSLKKLELGDCEIME-IPPDIGCLSSLESLNLSGNNIE-SLPTSISQLSRLRWLYLVNC 261 (369)
Q Consensus 192 ~~-~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~ 261 (369)
|. ...+|..+..+++|+.|++++|.+.+ +|..+..+++|++|++++|.+. .+|..++.+++|+.+++..+
T Consensus 239 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 239 CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 65 44556666667777777777766555 5656666777777777776544 66777777777777766654
No 26
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=7.7e-27 Score=217.48 Aligned_cols=285 Identities=16% Similarity=0.139 Sum_probs=230.3
Q ss_pred CCCCCcCCccCCCCCCCCCccEEecCCCCCccccC-CccCCeeEEecCCccCcccCccCCCCCCCCEEeCcCCccccccc
Q 017542 2 IMAGCESLRCFPQNIHFISSIKIDCYKCVNLREFP-RISGNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLS 80 (369)
Q Consensus 2 ~l~~c~~l~~~p~~~~~~~L~~L~l~~~~~l~~~~-~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~ 80 (369)
++.++ +++.+|....+++|++|++++|. +..++ ..+.+|++|++++|.++.++ +..+++|++|++++|.... ++
T Consensus 48 ~Ls~n-~l~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~-l~ 122 (457)
T 3bz5_A 48 DCHNS-SITDMTGIEKLTGLTKLICTSNN-ITTLDLSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTK-LD 122 (457)
T ss_dssp ECCSS-CCCCCTTGGGCTTCSEEECCSSC-CSCCCCTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSC-CC
T ss_pred EccCC-CcccChhhcccCCCCEEEccCCc-CCeEccccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCe-ec
Confidence 34554 56777754589999999999998 77776 12239999999999999886 8899999999999986554 44
Q ss_pred ccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcc
Q 017542 81 TSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKS 160 (369)
Q Consensus 81 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 160 (369)
++.+++|++|++++|.... ++ ++.+++|++|++++|...+.+ .+..+++|++|++++|. ++.++ +..+++
T Consensus 123 --~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~-l~~l~--l~~l~~ 192 (457)
T 3bz5_A 123 --VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK-ITELD--VSQNKL 192 (457)
T ss_dssp --CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC-CCCCC--CTTCTT
T ss_pred --CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc-cceec--cccCCC
Confidence 7889999999999986554 33 788999999999998777666 46789999999999965 44455 788999
Q ss_pred hhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcC
Q 017542 161 LERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNI 240 (369)
Q Consensus 161 L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l 240 (369)
|+.|++++|.+..+ .+..+++|+.|++++|....+| +..+++|+.|++++|.+.+++ ...+++|+.|++++|.+
T Consensus 193 L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~--~~~l~~L~~L~l~~n~L 266 (457)
T 3bz5_A 193 LNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDL 266 (457)
T ss_dssp CCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECTTCCC
T ss_pred CCEEECcCCcCCee--ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcC--HHHCCCCCEEeccCCCC
Confidence 99999999999987 3788999999999999988887 788999999999999999865 44566777666666655
Q ss_pred Cccch---------hhccCCcCcEecccCCcccccCCCCCcccceeccccccccccCCCchhhhHHHhHHHHHhhh
Q 017542 241 ESLPT---------SISQLSRLRWLYLVNCVKLQSLPELPLLLVMLGASDCKRLQFLPELTSCLEELDASILQALS 307 (369)
Q Consensus 241 ~~~~~---------~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~l~~l~~~~~~~l~ 307 (369)
+.+.- ..+.+++|+.|++++|..+..+|....+++.+++++|++|+.+....+.++.+++..|++++
T Consensus 267 ~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~l~~l~~L~ 342 (457)
T 3bz5_A 267 LEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELDVSHNTKLK 342 (457)
T ss_dssp SCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCS
T ss_pred CEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccccccCCcCc
Confidence 43210 14578999999999999888888877889999999999999998877777666544444443
No 27
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=1.6e-26 Score=223.70 Aligned_cols=139 Identities=19% Similarity=0.096 Sum_probs=95.7
Q ss_pred CCccCCCCCCCCCccEEecCCCCCccccCC-ccC---CeeEEecCCccCccc-CccCCCCCCCCEEeCcCCccccccccc
Q 017542 8 SLRCFPQNIHFISSIKIDCYKCVNLREFPR-ISG---NVVELNLMCTPIEEV-PLSIECLPNLETLEMSFCNSLKRLSTS 82 (369)
Q Consensus 8 ~l~~~p~~~~~~~L~~L~l~~~~~l~~~~~-~~~---~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~ 82 (369)
+++.+|..+ .+++++|++++|. +..++. .+. +|++|++++|.++.+ |..+..+++|++|++++|......|..
T Consensus 22 ~l~~ip~~~-~~~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 99 (606)
T 3vq2_A 22 KLSKVPDDI-PSSTKNIDLSFNP-LKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGS 99 (606)
T ss_dssp CCSSCCTTS-CTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTS
T ss_pred CcccCCCCC-CCCcCEEECCCCC-cCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhh
Confidence 466777655 3677888888777 555543 333 777888877777765 345677778888888777655555667
Q ss_pred ccCCCCCcEEecCCCcCCccCchhhhccCccceeecccccccc-ccchhhhcCCCCCeEeecCCCCC
Q 017542 83 ICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIK-ELPSSIENLEGLKQLKLTGCTKL 148 (369)
Q Consensus 83 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~ 148 (369)
++++++|++|++++|......+..++.+++|++|++++|.... .+|..+.++++|++|++++|...
T Consensus 100 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 100 FSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp STTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred cCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcce
Confidence 7777778888887776555554667777777777777766554 45677777777777777776543
No 28
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=4.1e-26 Score=218.82 Aligned_cols=316 Identities=18% Similarity=0.094 Sum_probs=192.3
Q ss_pred CCccCCCCCCCCCccEEecCCCCCccccC-CccC---CeeEEecCCccCccc-CccCCCCCCCCEEeCcCCccccccccc
Q 017542 8 SLRCFPQNIHFISSIKIDCYKCVNLREFP-RISG---NVVELNLMCTPIEEV-PLSIECLPNLETLEMSFCNSLKRLSTS 82 (369)
Q Consensus 8 ~l~~~p~~~~~~~L~~L~l~~~~~l~~~~-~~~~---~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~ 82 (369)
+++.+|..+ .+++++|++++|. +..++ ..+. +|++|++++|.++.+ |..+..+++|++|++++|... .+|..
T Consensus 42 ~L~~ip~~~-~~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~ 118 (562)
T 3a79_B 42 NLTHVPKDL-PPRTKALSLSQNS-ISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC 118 (562)
T ss_dssp CCCSCCTTS-CTTCCEEECCSSC-CCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC
T ss_pred CCccCCCCC-CCCcCEEECCCCC-ccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc
Confidence 567777765 3778888888887 66655 3333 888888888888866 456788888888888886644 56654
Q ss_pred ccCCCCCcEEecCCCcCCc-cCchhhhccCccceeeccccccccccchhhhcCCCC--CeEeecCCCC--CCCCCcccCC
Q 017542 83 ICKLKSLRSLDLSYCINLE-SFPEILEKMELLEEINLEEASNIKELPSSIENLEGL--KQLKLTGCTK--LGSLPESLGN 157 (369)
Q Consensus 83 ~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~~~~~~~ 157 (369)
.+++|++|++++|.... ..|..++.+++|++|++++|..... .+..+++| ++|++++|.. ....+..+..
T Consensus 119 --~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~ 193 (562)
T 3a79_B 119 --PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQI 193 (562)
T ss_dssp --CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEE
T ss_pred --ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccc
Confidence 68888888888876554 2457788888888888887665432 23334444 6666666544 2222222211
Q ss_pred --------------------------Cc----------------------------------------------------
Q 017542 158 --------------------------LK---------------------------------------------------- 159 (369)
Q Consensus 158 --------------------------l~---------------------------------------------------- 159 (369)
++
T Consensus 194 l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~ 273 (562)
T 3a79_B 194 PNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF 273 (562)
T ss_dssp CCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH
T ss_pred cCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh
Confidence 11
Q ss_pred ---chhhhccCcccCC-CCCccc-----------------------------------------------------ccCC
Q 017542 160 ---SLERLHAGLLAIP-QAPSSI-----------------------------------------------------VDLN 182 (369)
Q Consensus 160 ---~L~~L~l~~~~~~-~~~~~l-----------------------------------------------------~~~~ 182 (369)
+|++|++++|.+. .+|..+ ..++
T Consensus 274 ~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~ 353 (562)
T 3a79_B 274 WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPS 353 (562)
T ss_dssp TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCC
T ss_pred hcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCC
Confidence 3444444444433 333322 4456
Q ss_pred CCcEEeecCCCCCC-CCccccCCCCCcEEeccCCCCccCC---CCCCCCCCCCEEEccCCcCCc-cchh-hccCCcCcEe
Q 017542 183 KLETLSLFECRGLV-LPPLLSGLSSLKKLELGDCEIMEIP---PDIGCLSSLESLNLSGNNIES-LPTS-ISQLSRLRWL 256 (369)
Q Consensus 183 ~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~L~~L~l~~~~l~~-~~~~-~~~~~~L~~L 256 (369)
+|++|++++|.... .|..+..+++|+.|++++|.+.+++ ..+..+++|++|++++|.++. +|.. +..+++|++|
T Consensus 354 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L 433 (562)
T 3a79_B 354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVL 433 (562)
T ss_dssp CCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEE
T ss_pred CceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEE
Confidence 67777777776443 4556666777777777777776543 345666777777777777764 6543 5566777777
Q ss_pred cccCCcccccCCCCC-cccceeccccccccccCCCc---hhhhHHHhHHHHHhhhccccccccCCCCCcEEEecCccCcc
Q 017542 257 YLVNCVKLQSLPELP-LLLVMLGASDCKRLQFLPEL---TSCLEELDASILQALSNRTGERLSKHMSPVQLIFANCLKLN 332 (369)
Q Consensus 257 ~l~~~~~l~~~~~~~-~~L~~L~l~~c~~L~~l~~~---~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~l~ 332 (369)
++++|.--..++... ++|+.|+++++ +++.++.. .++++.|++.++. ++.+....+.....+..+.+.+++--.
T Consensus 434 ~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 434 NLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQ-LKSVPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp ECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSC-CCCCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred ECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCC-CCCCCHHHHhcCCCCCEEEecCCCcCC
Confidence 777774323333333 57788888776 55555432 3456666665542 322222224444455667777665443
Q ss_pred h
Q 017542 333 E 333 (369)
Q Consensus 333 ~ 333 (369)
+
T Consensus 512 ~ 512 (562)
T 3a79_B 512 T 512 (562)
T ss_dssp C
T ss_pred C
Confidence 3
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=2.5e-26 Score=215.29 Aligned_cols=260 Identities=22% Similarity=0.303 Sum_probs=145.3
Q ss_pred CCccCCCCCCCCCccEEecCCCCCccccCCccC--CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccC
Q 017542 8 SLRCFPQNIHFISSIKIDCYKCVNLREFPRISG--NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICK 85 (369)
Q Consensus 8 ~l~~~p~~~~~~~L~~L~l~~~~~l~~~~~~~~--~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 85 (369)
+++.+|....+++|++|++++|. +..++.... +|++|+++++.++.++. +..+++|++|++++|... .++. +..
T Consensus 57 ~i~~l~~~~~l~~L~~L~Ls~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~-~~~~-~~~ 132 (466)
T 1o6v_A 57 GIKSIDGVEYLNNLTQINFSNNQ-LTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQIT-DIDP-LKN 132 (466)
T ss_dssp CCCCCTTGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-CCGG-GTT
T ss_pred CCccCcchhhhcCCCEEECCCCc-cCCchhhhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCC-CChH-HcC
Confidence 35667765578888888888887 666665222 88888888888887766 788888888888887543 3443 777
Q ss_pred CCCCcEEecCCCcCCccCchhhhccCccc---------------------eeeccccccccccchhhhcCCCCCeEeecC
Q 017542 86 LKSLRSLDLSYCINLESFPEILEKMELLE---------------------EINLEEASNIKELPSSIENLEGLKQLKLTG 144 (369)
Q Consensus 86 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~---------------------~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 144 (369)
+++|++|++++|.... ++ .+..+++|+ +|++++|.. ..++ .+..+++|++|++++
T Consensus 133 l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~-~l~~l~~L~~L~l~~ 208 (466)
T 1o6v_A 133 LTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV-SDIS-VLAKLTNLESLIATN 208 (466)
T ss_dssp CTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCC-CCCG-GGGGCTTCSEEECCS
T ss_pred CCCCCEEECCCCccCC-Ch-hhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcC-CCCh-hhccCCCCCEEEecC
Confidence 8888888888765332 22 244444444 444443332 1111 234444444554444
Q ss_pred CCCCCCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCC
Q 017542 145 CTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDI 224 (369)
Q Consensus 145 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 224 (369)
|......+ ++.+++|++|++++|.+..+ ..+..+++|+.|++++|.....+. +..+++|+.|++++|.+..++. +
T Consensus 209 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~ 283 (466)
T 1o6v_A 209 NQISDITP--LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP-L 283 (466)
T ss_dssp SCCCCCGG--GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-G
T ss_pred Cccccccc--ccccCCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc-c
Confidence 33222211 33444555555555554443 234445555555555555444433 4455555555555555555433 4
Q ss_pred CCCCCCCEEEccCCcCCccchhhccCCcCcEecccCCcccccCCC--CCcccceeccccc
Q 017542 225 GCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPE--LPLLLVMLGASDC 282 (369)
Q Consensus 225 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~L~~L~l~~c 282 (369)
..+++|++|++++|.++.++. ++.+++|++|++++| .+++++. ..++|+.|++++|
T Consensus 284 ~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~n 341 (466)
T 1o6v_A 284 AGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFN-NISDISPVSSLTKLQRLFFYNN 341 (466)
T ss_dssp TTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSS-CCSCCGGGGGCTTCCEEECCSS
T ss_pred cCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCC-cCCCchhhccCccCCEeECCCC
Confidence 455555666666555555443 455556666666555 3333322 2245555555554
No 30
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=1.3e-26 Score=220.39 Aligned_cols=94 Identities=13% Similarity=0.067 Sum_probs=67.4
Q ss_pred CCCCCcCCccCCC-CC-CCCCccEEecCCCCCcccc-CCccC---CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcc
Q 017542 2 IMAGCESLRCFPQ-NI-HFISSIKIDCYKCVNLREF-PRISG---NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNS 75 (369)
Q Consensus 2 ~l~~c~~l~~~p~-~~-~~~~L~~L~l~~~~~l~~~-~~~~~---~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 75 (369)
+++++ .++.+++ .+ .+++|++|++++|. +..+ |..+. +|++|++++|.++.+|.. .+++|++|++++|..
T Consensus 27 ~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l 102 (520)
T 2z7x_B 27 NISQN-YISELWTSDILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAF 102 (520)
T ss_dssp ECCSS-CCCCCCHHHHTTCTTCCEEECCSSC-CCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCC
T ss_pred ECCCC-cccccChhhccccccccEEecCCCc-cCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEeccCCcc
Confidence 34454 3555553 33 78888888888887 5554 44444 888888888888888765 788888888888776
Q ss_pred cc-cccccccCCCCCcEEecCCCcC
Q 017542 76 LK-RLSTSICKLKSLRSLDLSYCIN 99 (369)
Q Consensus 76 ~~-~~~~~~~~~~~L~~L~l~~~~~ 99 (369)
.+ .+|..++++++|++|++++|..
T Consensus 103 ~~~~~p~~~~~l~~L~~L~L~~n~l 127 (520)
T 2z7x_B 103 DALPICKEFGNMSQLKFLGLSTTHL 127 (520)
T ss_dssp SSCCCCGGGGGCTTCCEEEEEESSC
T ss_pred ccccchhhhccCCcceEEEecCccc
Confidence 55 4567778888888888877654
No 31
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=1.7e-26 Score=223.57 Aligned_cols=114 Identities=19% Similarity=0.244 Sum_probs=72.9
Q ss_pred CccCCC-CC-CCCCccEEecCCCCCcccc-CCccC---CeeEEecCCccCccc-CccCCCCCCCCEEeCcCCcccccccc
Q 017542 9 LRCFPQ-NI-HFISSIKIDCYKCVNLREF-PRISG---NVVELNLMCTPIEEV-PLSIECLPNLETLEMSFCNSLKRLST 81 (369)
Q Consensus 9 l~~~p~-~~-~~~~L~~L~l~~~~~l~~~-~~~~~---~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~ 81 (369)
++.++. .+ .+++|++|++++|. +..+ |..+. +|++|++++|.++.+ |..+..+++|++|++++|......+.
T Consensus 44 l~~~~~~~~~~l~~L~~L~Ls~n~-l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~ 122 (606)
T 3vq2_A 44 LKILKSYSFSNFSELQWLDLSRCE-IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESF 122 (606)
T ss_dssp CCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSS
T ss_pred cCEeChhhccCCccCcEEeCCCCc-ccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcccccccc
Confidence 455544 33 67777777777776 5554 33333 777777777777655 55677777777777777655444445
Q ss_pred cccCCCCCcEEecCCCcCCc-cCchhhhccCccceeecccccc
Q 017542 82 SICKLKSLRSLDLSYCINLE-SFPEILEKMELLEEINLEEASN 123 (369)
Q Consensus 82 ~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~ 123 (369)
.++++++|++|++++|.... .+|..++.+++|++|++++|..
T Consensus 123 ~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l 165 (606)
T 3vq2_A 123 PIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165 (606)
T ss_dssp CCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCC
T ss_pred ccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcc
Confidence 56667777777777765543 3566666777777777666543
No 32
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.94 E-value=2.6e-25 Score=199.01 Aligned_cols=248 Identities=18% Similarity=0.220 Sum_probs=206.1
Q ss_pred CCccCCCCCCCCCccEEecCCCCCccccCC-ccC---CeeEEecCCccCccc-CccCCCCCCCCEEeCcCCccccccccc
Q 017542 8 SLRCFPQNIHFISSIKIDCYKCVNLREFPR-ISG---NVVELNLMCTPIEEV-PLSIECLPNLETLEMSFCNSLKRLSTS 82 (369)
Q Consensus 8 ~l~~~p~~~~~~~L~~L~l~~~~~l~~~~~-~~~---~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~ 82 (369)
+++.+|..+ .+.+++|++++|. +..++. .+. +|++|++++|.++.+ |..+..+++|++|++++|.. +.+|..
T Consensus 42 ~l~~lp~~~-~~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~l~~~ 118 (330)
T 1xku_A 42 GLEKVPKDL-PPDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KELPEK 118 (330)
T ss_dssp CCCSCCCSC-CTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC-SBCCSS
T ss_pred CccccCccC-CCCCeEEECCCCc-CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcC-CccChh
Confidence 466777655 4789999999998 777764 343 999999999999977 67899999999999999764 456654
Q ss_pred ccCCCCCcEEecCCCcCCccCchhhhccCccceeecccccccc--ccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcc
Q 017542 83 ICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIK--ELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKS 160 (369)
Q Consensus 83 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 160 (369)
+. ++|++|++++|......+..+..+++|++|++++|.... ..+..+..+++|++|++++|. +..+|..+. ++
T Consensus 119 ~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~--~~ 193 (330)
T 1xku_A 119 MP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLP--PS 193 (330)
T ss_dssp CC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCC--TT
T ss_pred hc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCcccc--cc
Confidence 43 799999999987777677789999999999999887643 556778899999999999965 455665443 78
Q ss_pred hhhhccCcccCCCC-CcccccCCCCcEEeecCCCCCCCCc-cccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCC
Q 017542 161 LERLHAGLLAIPQA-PSSIVDLNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGN 238 (369)
Q Consensus 161 L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 238 (369)
|++|++++|.+..+ +..+..+++|++|++++|....++. .+..+++|++|++++|.+..++..+..+++|++|++++|
T Consensus 194 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN 273 (330)
T ss_dssp CSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSS
T ss_pred CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCC
Confidence 99999999998866 5678899999999999999766654 788899999999999999999998999999999999999
Q ss_pred cCCccchh-hc------cCCcCcEecccCCcc
Q 017542 239 NIESLPTS-IS------QLSRLRWLYLVNCVK 263 (369)
Q Consensus 239 ~l~~~~~~-~~------~~~~L~~L~l~~~~~ 263 (369)
.++.++.. +. ..+.++.+++++|+.
T Consensus 274 ~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 274 NISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred cCCccChhhcCCcccccccccccceEeecCcc
Confidence 99977643 22 247899999999963
No 33
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=6.1e-26 Score=222.59 Aligned_cols=205 Identities=23% Similarity=0.236 Sum_probs=128.0
Q ss_pred chhhhccCccceeeccccccccccc-hhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCC---CCCcccc
Q 017542 104 PEILEKMELLEEINLEEASNIKELP-SSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIP---QAPSSIV 179 (369)
Q Consensus 104 ~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~---~~~~~l~ 179 (369)
+..+..+++|++|++++|.....++ ..+..+++|++|++++|......+..+..+++|+.|++++|.+. ..|..+.
T Consensus 398 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~ 477 (680)
T 1ziw_A 398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ 477 (680)
T ss_dssp TTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT
T ss_pred hhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccc
Confidence 3445555555555555554443333 34555555666666555443333444555666666666666553 3456677
Q ss_pred cCCCCcEEeecCCCCCCCCc-cccCCCCCcEEeccCCCCccCCC---------CCCCCCCCCEEEccCCcCCccch-hhc
Q 017542 180 DLNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIMEIPP---------DIGCLSSLESLNLSGNNIESLPT-SIS 248 (369)
Q Consensus 180 ~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~---------~~~~~~~L~~L~l~~~~l~~~~~-~~~ 248 (369)
.+++|+.|++++|....++. .+..+++|+.|++++|.+..++. .+..+++|++|++++|.++.+|. .+.
T Consensus 478 ~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~ 557 (680)
T 1ziw_A 478 PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFK 557 (680)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcc
Confidence 77788888888887666554 46777888888888887765321 25667788888888888887774 467
Q ss_pred cCCcCcEecccCCcccccCCCC----CcccceeccccccccccCCCc-----hhhhHHHhHHHHHhhhccc
Q 017542 249 QLSRLRWLYLVNCVKLQSLPEL----PLLLVMLGASDCKRLQFLPEL-----TSCLEELDASILQALSNRT 310 (369)
Q Consensus 249 ~~~~L~~L~l~~~~~l~~~~~~----~~~L~~L~l~~c~~L~~l~~~-----~~~l~~l~~~~~~~l~~~~ 310 (369)
.+++|++|++++| .++.++.. .++|+.|+++++ .++.++.. .++++.+++.+++..++..
T Consensus 558 ~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 558 DLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred cccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 7888888888877 56666642 367788888776 45555432 2445555555555444443
No 34
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=1.4e-25 Score=208.69 Aligned_cols=241 Identities=24% Similarity=0.253 Sum_probs=207.6
Q ss_pred CccEEecCCCCCccccCCccC-CeeEEecCCccCcccC-ccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCC
Q 017542 20 SSIKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVP-LSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYC 97 (369)
Q Consensus 20 ~L~~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 97 (369)
..+.++.++.. +..+|..++ +++.|++++|.++.++ ..+..+++|++|++++|......+..+.++++|++|++++|
T Consensus 44 ~~~~v~c~~~~-l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 44 QFSKVICVRKN-LREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp TSCEEECCSCC-CSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCCEEEeCCCC-cCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 35678888877 899998776 9999999999999776 57899999999999998776666677899999999999998
Q ss_pred cCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCc-ccCCCcchhhhccCcccCCCCCc
Q 017542 98 INLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPE-SLGNLKSLERLHAGLLAIPQAPS 176 (369)
Q Consensus 98 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~ 176 (369)
......+..+..+++|++|++++|......+..+..+++|++|++++|+.+..++. .+..+++|++|++++|.+..+|
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~- 201 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP- 201 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-
Confidence 76655556789999999999998876655566888999999999999887776654 5788999999999999999887
Q ss_pred ccccCCCCcEEeecCCCCCCC-CccccCCCCCcEEeccCCCCccC-CCCCCCCCCCCEEEccCCcCCccch-hhccCCcC
Q 017542 177 SIVDLNKLETLSLFECRGLVL-PPLLSGLSSLKKLELGDCEIMEI-PPDIGCLSSLESLNLSGNNIESLPT-SISQLSRL 253 (369)
Q Consensus 177 ~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L 253 (369)
.+..+++|+.|++++|....+ +..+..+++|+.|++++|.+..+ +..+..+++|++|+|++|.++.++. .+..+++|
T Consensus 202 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 281 (440)
T 3zyj_A 202 NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL 281 (440)
T ss_dssp CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTC
T ss_pred ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCC
Confidence 478899999999999997666 56888999999999999999984 5567889999999999999997774 46889999
Q ss_pred cEecccCCc
Q 017542 254 RWLYLVNCV 262 (369)
Q Consensus 254 ~~L~l~~~~ 262 (369)
+.|++++|+
T Consensus 282 ~~L~L~~Np 290 (440)
T 3zyj_A 282 ERIHLHHNP 290 (440)
T ss_dssp CEEECCSSC
T ss_pred CEEEcCCCC
Confidence 999999986
No 35
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=1.8e-25 Score=208.60 Aligned_cols=240 Identities=27% Similarity=0.258 Sum_probs=206.8
Q ss_pred ccEEecCCCCCccccCCccC-CeeEEecCCccCccc-CccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCc
Q 017542 21 SIKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEV-PLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCI 98 (369)
Q Consensus 21 L~~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 98 (369)
...++.++.. +..+|..++ ++++|++++|.++.+ +..+..+++|++|++++|......+..+.++++|++|++++|.
T Consensus 56 ~~~v~c~~~~-l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 56 FSKVVCTRRG-LSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp SCEEECCSSC-CSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CcEEEECCCC-cCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 5678888776 889998666 999999999999976 4578999999999999987766666788999999999999987
Q ss_pred CCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCc-ccCCCcchhhhccCcccCCCCCcc
Q 017542 99 NLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPE-SLGNLKSLERLHAGLLAIPQAPSS 177 (369)
Q Consensus 99 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~ 177 (369)
.....+..+..+++|++|++++|......+..+..+++|++|++++|+.++.++. .+..+++|++|++++|.+..++ .
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~ 213 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-N 213 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-C
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-c
Confidence 6666667789999999999998876655556788999999999999888777664 5788999999999999999886 5
Q ss_pred cccCCCCcEEeecCCCCCCC-CccccCCCCCcEEeccCCCCccC-CCCCCCCCCCCEEEccCCcCCccch-hhccCCcCc
Q 017542 178 IVDLNKLETLSLFECRGLVL-PPLLSGLSSLKKLELGDCEIMEI-PPDIGCLSSLESLNLSGNNIESLPT-SISQLSRLR 254 (369)
Q Consensus 178 l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~ 254 (369)
+..+++|+.|++++|....+ +..+..+++|+.|++++|.+..+ +..+..+++|++|++++|.++.++. .+..+++|+
T Consensus 214 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 293 (452)
T 3zyi_A 214 LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV 293 (452)
T ss_dssp CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCC
T ss_pred ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCC
Confidence 78899999999999997665 56788999999999999999984 5567889999999999999998774 467899999
Q ss_pred EecccCCc
Q 017542 255 WLYLVNCV 262 (369)
Q Consensus 255 ~L~l~~~~ 262 (369)
+|++++|+
T Consensus 294 ~L~L~~Np 301 (452)
T 3zyi_A 294 ELHLHHNP 301 (452)
T ss_dssp EEECCSSC
T ss_pred EEEccCCC
Confidence 99999985
No 36
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=4.7e-26 Score=203.33 Aligned_cols=210 Identities=28% Similarity=0.455 Sum_probs=187.1
Q ss_pred CCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEe
Q 017542 62 LPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLK 141 (369)
Q Consensus 62 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 141 (369)
.+++++|++++|... .+|..+.++++|++|++++|... .+|..++.+++|++|++++|... .+|..+..+++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 478999999997654 78888888999999999998765 88888999999999999987655 7888999999999999
Q ss_pred ecCCCCCCCCCcccCC---------CcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEec
Q 017542 142 LTGCTKLGSLPESLGN---------LKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLEL 212 (369)
Q Consensus 142 l~~~~~~~~~~~~~~~---------l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 212 (369)
+++|+..+.+|..+.. +++|++|++++|.+..+|..+..+++|++|++++|....+|..+..+++|++|++
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~L 236 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDL 236 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEEC
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEEC
Confidence 9999988888876654 8999999999999999999999999999999999998889888999999999999
Q ss_pred cCCCCcc-CCCCCCCCCCCCEEEccCCcCC-ccchhhccCCcCcEecccCCcccccCCCCCccc
Q 017542 213 GDCEIME-IPPDIGCLSSLESLNLSGNNIE-SLPTSISQLSRLRWLYLVNCVKLQSLPELPLLL 274 (369)
Q Consensus 213 ~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L 274 (369)
++|.+.+ ++..+..+++|++|++++|.+. .+|..++.+++|++|++++|...+.+|..+..+
T Consensus 237 s~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L 300 (328)
T 4fcg_A 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300 (328)
T ss_dssp TTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGS
T ss_pred cCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhc
Confidence 9998877 7778899999999999998665 888889999999999999998888888755433
No 37
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.94 E-value=3e-25 Score=198.74 Aligned_cols=267 Identities=18% Similarity=0.196 Sum_probs=210.3
Q ss_pred CCccCCCCCCCCCccEEecCCCCCccccC-CccC---CeeEEecCCccCccc-CccCCCCCCCCEEeCcCCccccccccc
Q 017542 8 SLRCFPQNIHFISSIKIDCYKCVNLREFP-RISG---NVVELNLMCTPIEEV-PLSIECLPNLETLEMSFCNSLKRLSTS 82 (369)
Q Consensus 8 ~l~~~p~~~~~~~L~~L~l~~~~~l~~~~-~~~~---~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~ 82 (369)
+++.+|..+ .+++++|++++|. +..++ ..+. +|++|++++|.++.+ +..+..+++|++|++++|... .+|..
T Consensus 44 ~l~~ip~~~-~~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~ 120 (332)
T 2ft3_A 44 GLKAVPKEI-SPDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPN 120 (332)
T ss_dssp CCSSCCSCC-CTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSS
T ss_pred CccccCCCC-CCCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcc
Confidence 567788766 5789999999998 66664 3444 999999999999977 567899999999999997654 66654
Q ss_pred ccCCCCCcEEecCCCcCCccCchhhhccCccceeecccccccc--ccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcc
Q 017542 83 ICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIK--ELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKS 160 (369)
Q Consensus 83 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 160 (369)
+. ++|++|++++|......+..+..+++|++|++++|.... ..+..+..+ +|++|++++|. +..+|..+. ++
T Consensus 121 ~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~--~~ 194 (332)
T 2ft3_A 121 LP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDLP--ET 194 (332)
T ss_dssp CC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSC--SS
T ss_pred cc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCcccc--CC
Confidence 44 899999999987766666678999999999999887643 455666667 99999999965 455665443 78
Q ss_pred hhhhccCcccCCCCC-cccccCCCCcEEeecCCCCCCCCc-cccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCC
Q 017542 161 LERLHAGLLAIPQAP-SSIVDLNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGN 238 (369)
Q Consensus 161 L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 238 (369)
|++|++++|.+..++ ..+..+++|+.|++++|....++. .+..+++|+.|++++|.+..+|..+..+++|++|++++|
T Consensus 195 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N 274 (332)
T 2ft3_A 195 LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTN 274 (332)
T ss_dssp CSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSS
T ss_pred CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCC
Confidence 999999999998775 678899999999999999776664 788899999999999999999998999999999999999
Q ss_pred cCCccchh-hcc------CCcCcEecccCCcccc-cCC-C---CCcccceecccccc
Q 017542 239 NIESLPTS-ISQ------LSRLRWLYLVNCVKLQ-SLP-E---LPLLLVMLGASDCK 283 (369)
Q Consensus 239 ~l~~~~~~-~~~------~~~L~~L~l~~~~~l~-~~~-~---~~~~L~~L~l~~c~ 283 (369)
.++.++.. +.. .++|+.|++++|+... .++ . ..++|+.+++.+++
T Consensus 275 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 275 NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 99977632 322 4779999999996321 222 1 22455666665543
No 38
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=1.4e-25 Score=215.19 Aligned_cols=95 Identities=14% Similarity=0.124 Sum_probs=71.8
Q ss_pred CCCCCcCCccCCC-CC-CCCCccEEecCCCCCcccc-CCccC---CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcc
Q 017542 2 IMAGCESLRCFPQ-NI-HFISSIKIDCYKCVNLREF-PRISG---NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNS 75 (369)
Q Consensus 2 ~l~~c~~l~~~p~-~~-~~~~L~~L~l~~~~~l~~~-~~~~~---~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 75 (369)
++.++ .++.+|+ .+ .+++|++|++++|. +..+ |..+. +|++|++++|.++.+|.. .+++|++|++++|..
T Consensus 58 ~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l 133 (562)
T 3a79_B 58 SLSQN-SISELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDF 133 (562)
T ss_dssp ECCSS-CCCCCCGGGTTTCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCC
T ss_pred ECCCC-CccccChhhhccCCCccEEECCCCC-CCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCc
Confidence 34554 3566664 44 88999999999998 6665 44444 899999999999988875 788999999999876
Q ss_pred cc-cccccccCCCCCcEEecCCCcCC
Q 017542 76 LK-RLSTSICKLKSLRSLDLSYCINL 100 (369)
Q Consensus 76 ~~-~~~~~~~~~~~L~~L~l~~~~~~ 100 (369)
.+ ..|..++++++|++|++++|...
T Consensus 134 ~~l~~p~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 134 DVLPVCKEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp SBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred cccCchHhhcccCcccEEecCCCccc
Confidence 55 34567888889999998887543
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=6.6e-26 Score=207.61 Aligned_cols=248 Identities=19% Similarity=0.169 Sum_probs=187.4
Q ss_pred CccCCCCC--CCCCccEEecCCCCCccccCC-ccC---CeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCcccccccc
Q 017542 9 LRCFPQNI--HFISSIKIDCYKCVNLREFPR-ISG---NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLST 81 (369)
Q Consensus 9 l~~~p~~~--~~~~L~~L~l~~~~~l~~~~~-~~~---~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~ 81 (369)
++.+|... .+++|++|++++|. +..++. .+. +|++|++++|.++.++. .+..+++|++|++++|... .+|.
T Consensus 57 l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~ 134 (390)
T 3o6n_A 57 MRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPR 134 (390)
T ss_dssp ESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred hhhCChhHhcccccCcEEECCCCc-ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCH
Confidence 55667653 67888888888887 565543 333 78888888888876654 4677888888888886544 4443
Q ss_pred -cccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhh----------------------------
Q 017542 82 -SICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIE---------------------------- 132 (369)
Q Consensus 82 -~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~---------------------------- 132 (369)
.+..+++|++|++++|......+..+..+++|++|++++|.........+.
T Consensus 135 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~ 214 (390)
T 3o6n_A 135 GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASH 214 (390)
T ss_dssp TTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCS
T ss_pred HHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCC
Confidence 357788888888888766665666677788888888887654332111111
Q ss_pred ---------cCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCC-CcccccCCCCcEEeecCCCCCCCCcccc
Q 017542 133 ---------NLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQA-PSSIVDLNKLETLSLFECRGLVLPPLLS 202 (369)
Q Consensus 133 ---------~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 202 (369)
..++|+.|++++|... .. ..+..+++|++|++++|.+..+ +..+..+++|++|++++|....++..+.
T Consensus 215 n~l~~~~~~~~~~L~~L~l~~n~l~-~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 292 (390)
T 3o6n_A 215 NSINVVRGPVNVELTILKLQHNNLT-DT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQ 292 (390)
T ss_dssp SCCCEEECCCCSSCCEEECCSSCCC-CC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSS
T ss_pred CeeeeccccccccccEEECCCCCCc-cc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccC
Confidence 1124555555554332 22 3577889999999999999865 6788899999999999999888888788
Q ss_pred CCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccchhhccCCcCcEecccCCc
Q 017542 203 GLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCV 262 (369)
Q Consensus 203 ~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~ 262 (369)
.+++|+.|++++|.+..++..+..+++|++|++++|.++.++ +..+++|++|++++|+
T Consensus 293 ~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 293 PIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp CCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSC
T ss_pred CCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeC--chhhccCCEEEcCCCC
Confidence 899999999999999998877888899999999999999886 7788999999999995
No 40
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=5.3e-26 Score=218.52 Aligned_cols=148 Identities=20% Similarity=0.208 Sum_probs=78.5
Q ss_pred CCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCC--CCCCCCCCCCEEEccCCcCC-ccchhhccCCcCcEec
Q 017542 181 LNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIP--PDIGCLSSLESLNLSGNNIE-SLPTSISQLSRLRWLY 257 (369)
Q Consensus 181 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~ 257 (369)
+++|++|++++|....++..+..+++|+.|++++|.+...+ ..+..+++|++|++++|.++ ..+..+..+++|++|+
T Consensus 372 ~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 451 (570)
T 2z63_A 372 TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 451 (570)
T ss_dssp CSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred cCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEE
Confidence 33444444444433333333445555555555555555432 23556667777777777666 3445566677777777
Q ss_pred ccCCccc-ccCCC---CCcccceeccccccccccC-CC---chhhhHHHhHHHHHhhhccccccccCCCCCcEEEecCcc
Q 017542 258 LVNCVKL-QSLPE---LPLLLVMLGASDCKRLQFL-PE---LTSCLEELDASILQALSNRTGERLSKHMSPVQLIFANCL 329 (369)
Q Consensus 258 l~~~~~l-~~~~~---~~~~L~~L~l~~c~~L~~l-~~---~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~ 329 (369)
+++|... ..+|. ..++|+.|++++|. +..+ +. ..++++.|++.++ .++......+.....+..+.+.+++
T Consensus 452 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcCCcCccccchhhhhcccCCCEEECCCCc-cccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCc
Confidence 7777422 13343 23567777777763 2222 21 2356666766655 3333333334445556677777654
Q ss_pred C
Q 017542 330 K 330 (369)
Q Consensus 330 ~ 330 (369)
-
T Consensus 530 ~ 530 (570)
T 2z63_A 530 W 530 (570)
T ss_dssp B
T ss_pred c
Confidence 3
No 41
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=4.9e-26 Score=218.75 Aligned_cols=135 Identities=20% Similarity=0.153 Sum_probs=59.5
Q ss_pred CccCCCCCCCCCccEEecCCCCCccccCC-ccC---CeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCcccccccccc
Q 017542 9 LRCFPQNIHFISSIKIDCYKCVNLREFPR-ISG---NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTSI 83 (369)
Q Consensus 9 l~~~p~~~~~~~L~~L~l~~~~~l~~~~~-~~~---~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~ 83 (369)
++.+|..+ .+++++|++++|. +..++. .+. +|++|++++|.++.++. .+..+++|++|++++|......+..+
T Consensus 19 l~~ip~~l-~~~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 96 (570)
T 2z63_A 19 FYKIPDNL-PFSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF 96 (570)
T ss_dssp CSSCCSSS-CSSCCEEECCSCC-CCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT
T ss_pred ccccCCCc-cccccEEEccCCc-cCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhh
Confidence 44455433 2345555555555 333331 121 55555555555554432 34455555555555544333333344
Q ss_pred cCCCCCcEEecCCCcCCccCchhhhccCccceeecccccccc-ccchhhhcCCCCCeEeecCC
Q 017542 84 CKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIK-ELPSSIENLEGLKQLKLTGC 145 (369)
Q Consensus 84 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~ 145 (369)
.++++|++|++++|......+..++.+++|++|++++|.... .+|..+.++++|++|++++|
T Consensus 97 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n 159 (570)
T 2z63_A 97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159 (570)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS
T ss_pred cCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCC
Confidence 444555555554443222222234444444444444443332 23444444444444444443
No 42
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=1.2e-25 Score=203.20 Aligned_cols=281 Identities=18% Similarity=0.148 Sum_probs=224.6
Q ss_pred CCCCCCccEEecCCCCCccccCCccC-CeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCcccccccccccCCCCCcEE
Q 017542 15 NIHFISSIKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSL 92 (369)
Q Consensus 15 ~~~~~~L~~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 92 (369)
...|+.....+++++. +..+|..+. +|++|+++++.++.++. .+..+++|++|++++|...+..+..+.++++|++|
T Consensus 27 ~~~C~~~~~c~~~~~~-l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 27 SLSCDRNGICKGSSGS-LNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp CCEECTTSEEECCSTT-CSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCCCeEeeCCCCC-cccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 3366777778998888 899998665 99999999999998876 68999999999999987666656778899999999
Q ss_pred ecCCCcCCccCchhhhccCccceeeccccccccccch--hhhcCCCCCeEeecCCCCCCCC-CcccCCCcchhhhccCcc
Q 017542 93 DLSYCINLESFPEILEKMELLEEINLEEASNIKELPS--SIENLEGLKQLKLTGCTKLGSL-PESLGNLKSLERLHAGLL 169 (369)
Q Consensus 93 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~ 169 (369)
++++|......+..+..+++|++|++++|... .++. .+..+++|++|++++|+..+.+ +..+..+++|++|++++|
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence 99998766555555899999999999987655 4444 6888999999999998655544 456889999999999999
Q ss_pred cCCCC-CcccccCCCCcEEeecCCCCCCCCcc-ccCCCCCcEEeccCCCCccCCCC----CCCCCCCCEEEccCCcCC--
Q 017542 170 AIPQA-PSSIVDLNKLETLSLFECRGLVLPPL-LSGLSSLKKLELGDCEIMEIPPD----IGCLSSLESLNLSGNNIE-- 241 (369)
Q Consensus 170 ~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~L~~L~l~~~~l~-- 241 (369)
.+... +..+..+++|++|++++|....++.. +..+++|+.|++++|.+.+.+.. ......++.++++++.++
T Consensus 185 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~ 264 (353)
T 2z80_A 185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE 264 (353)
T ss_dssp TCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHH
T ss_pred CcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCc
Confidence 98855 67888999999999999997777653 44578999999999999874321 234667888999888776
Q ss_pred ---ccchhhccCCcCcEecccCCcccccCCCC----CcccceeccccccccccCCCchhhhHHHhHHH
Q 017542 242 ---SLPTSISQLSRLRWLYLVNCVKLQSLPEL----PLLLVMLGASDCKRLQFLPELTSCLEELDASI 302 (369)
Q Consensus 242 ---~~~~~~~~~~~L~~L~l~~~~~l~~~~~~----~~~L~~L~l~~c~~L~~l~~~~~~l~~l~~~~ 302 (369)
.+|..+..+++|++|++++| .++.+|.. .++|++|++++++ +...++.++.+..+.
T Consensus 265 ~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~----~~~~~~~l~~l~~~~ 327 (353)
T 2z80_A 265 SLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP----WDCSCPRIDYLSRWL 327 (353)
T ss_dssp HHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC----BCCCHHHHHHHHHHH
T ss_pred chhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC----ccCcCCCcHHHHHHH
Confidence 46778899999999999999 67777752 3678899998875 344555666666553
No 43
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.94 E-value=1e-25 Score=225.65 Aligned_cols=166 Identities=17% Similarity=0.146 Sum_probs=117.9
Q ss_pred CCCCcCCccC-CCCC-CCCCccEEecCCCCCcccc-CCccC---CeeEEecCCccCccc-CccCCCCCCCCEEeCcCCcc
Q 017542 3 MAGCESLRCF-PQNI-HFISSIKIDCYKCVNLREF-PRISG---NVVELNLMCTPIEEV-PLSIECLPNLETLEMSFCNS 75 (369)
Q Consensus 3 l~~c~~l~~~-p~~~-~~~~L~~L~l~~~~~l~~~-~~~~~---~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~ 75 (369)
++++ .++.+ |..+ .+++|++|++++|.....+ |..+. +|++|++++|.+..+ |..+..+++|++|++++|..
T Consensus 31 Ls~N-~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l 109 (844)
T 3j0a_A 31 LSFN-YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGL 109 (844)
T ss_dssp EESC-CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCC
T ss_pred CCCC-cCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCC
Confidence 4444 34554 4455 8899999999999666676 44444 899999999999866 66889999999999999877
Q ss_pred ccccccc--ccCCCCCcEEecCCCcCCccCc-hhhhccCccceeeccccccccccchhhhcC--CCCCeEeecCCCCCCC
Q 017542 76 LKRLSTS--ICKLKSLRSLDLSYCINLESFP-EILEKMELLEEINLEEASNIKELPSSIENL--EGLKQLKLTGCTKLGS 150 (369)
Q Consensus 76 ~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~ 150 (369)
.+.++.. +..+++|++|++++|......+ ..++++++|++|++++|......+..+..+ ++|+.|++++|.....
T Consensus 110 ~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~ 189 (844)
T 3j0a_A 110 SDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSR 189 (844)
T ss_dssp SSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCC
T ss_pred CcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccc
Confidence 6655544 7889999999999987665533 578899999999999887666555555555 6666666666555444
Q ss_pred CCcccCCCcc------hhhhccCcc
Q 017542 151 LPESLGNLKS------LERLHAGLL 169 (369)
Q Consensus 151 ~~~~~~~l~~------L~~L~l~~~ 169 (369)
.+..+..+.+ |+.|++++|
T Consensus 190 ~~~~~~~~~~~~~~~~L~~L~Ls~n 214 (844)
T 3j0a_A 190 VSVDWGKCMNPFRNMVLEILDVSGN 214 (844)
T ss_dssp CCCCCCSSSCTTTTCCBSEEBCSSC
T ss_pred cccchhhcCCccccCceeEEecCCC
Confidence 4433333332 555555554
No 44
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=1.8e-25 Score=197.97 Aligned_cols=239 Identities=23% Similarity=0.278 Sum_probs=186.2
Q ss_pred cEEecCCCCCccccCCccC-CeeEEecCCccCcccCcc-CCCCCCCCEEeCcCCcccc--cccccccCCCCCcEEecCCC
Q 017542 22 IKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPLS-IECLPNLETLEMSFCNSLK--RLSTSICKLKSLRSLDLSYC 97 (369)
Q Consensus 22 ~~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~ 97 (369)
+.++++++. +..+|..+. +|++|+++++.++.++.. +..+++|++|++++|.... ..+..+..+++|++|++++|
T Consensus 10 ~~l~c~~~~-l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 10 TEIRCNSKG-LTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp TEEECCSSC-CSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred CEEEcCCCC-cccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence 467888777 888887665 999999999999888764 6889999999999876543 22455667899999999997
Q ss_pred cCCccCchhhhccCccceeeccccccccccc-hhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCC--C
Q 017542 98 INLESFPEILEKMELLEEINLEEASNIKELP-SSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQ--A 174 (369)
Q Consensus 98 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~ 174 (369)
.. ..++..+..+++|++|++++|......+ ..+..+++|++|++++|......+..+..+++|++|++++|.+.. .
T Consensus 89 ~i-~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 167 (306)
T 2z66_A 89 GV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167 (306)
T ss_dssp SE-EEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred cc-ccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccc
Confidence 54 3566678889999999999776554333 467888899999999877665666667888888889988888774 6
Q ss_pred CcccccCCCCcEEeecCCCCCCC-CccccCCCCCcEEeccCCCCccCCC-CCCCCCCCCEEEccCCcCCc-cchhhccCC
Q 017542 175 PSSIVDLNKLETLSLFECRGLVL-PPLLSGLSSLKKLELGDCEIMEIPP-DIGCLSSLESLNLSGNNIES-LPTSISQLS 251 (369)
Q Consensus 175 ~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~ 251 (369)
|..+..+++|++|++++|....+ +..+..+++|+.|++++|.+.+++. .+..+++|++|++++|.++. .+..+..++
T Consensus 168 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 247 (306)
T 2z66_A 168 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP 247 (306)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCC
T ss_pred hhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhh
Confidence 77788888888898888886655 5567788888888888888887554 46778888888888888874 445666774
Q ss_pred -cCcEecccCCc
Q 017542 252 -RLRWLYLVNCV 262 (369)
Q Consensus 252 -~L~~L~l~~~~ 262 (369)
+|++|++++|+
T Consensus 248 ~~L~~L~L~~N~ 259 (306)
T 2z66_A 248 SSLAFLNLTQND 259 (306)
T ss_dssp TTCCEEECTTCC
T ss_pred ccCCEEEccCCC
Confidence 88888888884
No 45
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=7.5e-25 Score=205.22 Aligned_cols=266 Identities=24% Similarity=0.326 Sum_probs=191.2
Q ss_pred CCCCcCCccCCCCCCCCCccEEecCCCCCccccCCcc--CCeeEEecCCccCcccCccCCCCCCCCEEeCcCCccccccc
Q 017542 3 MAGCESLRCFPQNIHFISSIKIDCYKCVNLREFPRIS--GNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLS 80 (369)
Q Consensus 3 l~~c~~l~~~p~~~~~~~L~~L~l~~~~~l~~~~~~~--~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~ 80 (369)
+.+| .++.+|+...+++|++|++++|. +..++... .+|++|+++++.++.++. +..+++|++|++++|.... ++
T Consensus 75 Ls~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~ 150 (466)
T 1o6v_A 75 FSNN-QLTDITPLKNLTKLVDILMNNNQ-IADITPLANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISD-IS 150 (466)
T ss_dssp CCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECC-CG
T ss_pred CCCC-ccCCchhhhccccCCEEECCCCc-cccChhhcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCC-Ch
Confidence 4444 35666664478888888888887 66655422 288888888888877765 7778888888888765332 11
Q ss_pred --------------------ccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeE
Q 017542 81 --------------------TSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQL 140 (369)
Q Consensus 81 --------------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 140 (369)
..+..+++|++|++++|... .+ ..+..+++|++|++++|......+ +..+++|++|
T Consensus 151 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 226 (466)
T 1o6v_A 151 ALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS-DI-SVLAKLTNLESLIATNNQISDITP--LGILTNLDEL 226 (466)
T ss_dssp GGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCC-CC-GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEE
T ss_pred hhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCC-CC-hhhccCCCCCEEEecCCccccccc--ccccCCCCEE
Confidence 12566788888888887543 33 347888999999999776544333 6678889999
Q ss_pred eecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccC
Q 017542 141 KLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEI 220 (369)
Q Consensus 141 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 220 (369)
++++|.. ..++ .+..+++|++|++++|.+...+. +..+++|+.|++++|....++. +..+++|+.|++++|.+.++
T Consensus 227 ~l~~n~l-~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~ 302 (466)
T 1o6v_A 227 SLNGNQL-KDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDI 302 (466)
T ss_dssp ECCSSCC-CCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCC
T ss_pred ECCCCCc-ccch-hhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCc
Confidence 9988654 3343 46778888888888888877654 7778888888888888766665 67788888888888888775
Q ss_pred CCCCCCCCCCCEEEccCCcCCccchhhccCCcCcEecccCCcccccCCC--CCcccceecccccc
Q 017542 221 PPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPE--LPLLLVMLGASDCK 283 (369)
Q Consensus 221 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~L~~L~l~~c~ 283 (369)
+. +..+++|++|++++|.++.++. +..+++|++|++++| .++.++. ..++|+.|++++|+
T Consensus 303 ~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 303 SP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNN-KVSDVSSLANLTNINWLSAGHNQ 364 (466)
T ss_dssp GG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC
T ss_pred hh-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCC-ccCCchhhccCCCCCEEeCCCCc
Confidence 54 6677888888888888876654 677888888888887 5555543 23667777777664
No 46
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=2e-25 Score=195.54 Aligned_cols=219 Identities=22% Similarity=0.227 Sum_probs=124.2
Q ss_pred cEEecCCCCCccccCCccC-CeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcC
Q 017542 22 IKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCIN 99 (369)
Q Consensus 22 ~~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 99 (369)
+.++++++. +..+|..+. +|++|+++++.++.++. .+..+++|++|++++|......+..+..+++|++|++++|..
T Consensus 14 ~~~~c~~~~-l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 14 VTTSCPQQG-LQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp CEEECCSSC-CSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred eEEEcCcCC-cccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 567777666 777776444 77888887777776653 467777788888877655544456677777777777777652
Q ss_pred Ccc-CchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCc-c
Q 017542 100 LES-FPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPS-S 177 (369)
Q Consensus 100 ~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~ 177 (369)
... .+..+..+++|++|++++|......+..+..+++|++|++++|......+..+..+++|++|++++|.+..++. .
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 172 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA 172 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHH
Confidence 333 35666677777777777665544445556666666666666654333323334455555555555555444332 2
Q ss_pred cccCCCCcEEeecCCCCCCC-CccccCCCCCcEEeccCCCCccCCC-CCCCCCCCCEEEccCCcCC
Q 017542 178 IVDLNKLETLSLFECRGLVL-PPLLSGLSSLKKLELGDCEIMEIPP-DIGCLSSLESLNLSGNNIE 241 (369)
Q Consensus 178 l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~l~ 241 (369)
+..+++|+.|++++|....+ +..+..+++|+.|++++|.+.+++. .+..+++|++|++++|.+.
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred hcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 44444455555544443322 3334444444444444444444332 1334444444444444433
No 47
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.93 E-value=7.9e-25 Score=219.23 Aligned_cols=272 Identities=18% Similarity=0.162 Sum_probs=182.8
Q ss_pred cCCccCCCCCCCCCccEEecCCCCCcccc-CCccC---CeeEEecCCcc-Cccc-CccCCCCCCCCEEeCcCCccccccc
Q 017542 7 ESLRCFPQNIHFISSIKIDCYKCVNLREF-PRISG---NVVELNLMCTP-IEEV-PLSIECLPNLETLEMSFCNSLKRLS 80 (369)
Q Consensus 7 ~~l~~~p~~~~~~~L~~L~l~~~~~l~~~-~~~~~---~L~~L~l~~~~-~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~ 80 (369)
.+++.+|. -.+++++|++++|. +..+ +..+. +|++|+++++. +..+ +..+.++++|++|++++|......|
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~-i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p 90 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP 90 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCC-CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT
T ss_pred CCCCCCCC--CCCCcCEEECCCCc-CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH
Confidence 46788888 46789999999998 5555 44444 89999998774 4466 5678999999999999988777778
Q ss_pred ccccCCCCCcEEecCCCcCCccCchh--hhccCccceeeccccccccccc-hhhhcCCCCCeEeecCCCCCCCCCcccCC
Q 017542 81 TSICKLKSLRSLDLSYCINLESFPEI--LEKMELLEEINLEEASNIKELP-SSIENLEGLKQLKLTGCTKLGSLPESLGN 157 (369)
Q Consensus 81 ~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 157 (369)
..+.++++|++|++++|......+.. +..+++|++|++++|...+..+ ..+.++++|++|++++|......+..+..
T Consensus 91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~ 170 (844)
T 3j0a_A 91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170 (844)
T ss_dssp TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence 88999999999999998776655544 8899999999999887666433 57889999999999997766666666666
Q ss_pred C--cchhhhccCcccCCC-CCcccccCCC------CcEEeecCC------------------------------------
Q 017542 158 L--KSLERLHAGLLAIPQ-APSSIVDLNK------LETLSLFEC------------------------------------ 192 (369)
Q Consensus 158 l--~~L~~L~l~~~~~~~-~~~~l~~~~~------L~~L~l~~~------------------------------------ 192 (369)
+ ++|+.|++++|.+.. .+..+..+.+ |+.|++++|
T Consensus 171 l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~ 250 (844)
T 3j0a_A 171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250 (844)
T ss_dssp HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCS
T ss_pred ccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccc
Confidence 6 788999998887653 2222222222 444444444
Q ss_pred --------------------------CCCCC-CccccCCCCCcEEeccCCCCccC-CCCCCCCCCCCEEEccCCcCCcc-
Q 017542 193 --------------------------RGLVL-PPLLSGLSSLKKLELGDCEIMEI-PPDIGCLSSLESLNLSGNNIESL- 243 (369)
Q Consensus 193 --------------------------~~~~~-~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~- 243 (369)
....+ +..+..+++|+.|++++|.+..+ +..+..+++|++|++++|.++.+
T Consensus 251 ~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 330 (844)
T 3j0a_A 251 NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY 330 (844)
T ss_dssp SSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC
T ss_pred ccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccC
Confidence 32222 23344555566666666655552 33455556666666666665533
Q ss_pred chhhccCCcCcEecccCCcccccCCC----CCcccceeccccc
Q 017542 244 PTSISQLSRLRWLYLVNCVKLQSLPE----LPLLLVMLGASDC 282 (369)
Q Consensus 244 ~~~~~~~~~L~~L~l~~~~~l~~~~~----~~~~L~~L~l~~c 282 (369)
+..+..+++|++|++++| .++.++. ..++|+.|+++++
T Consensus 331 ~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N 372 (844)
T 3j0a_A 331 SSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDN 372 (844)
T ss_dssp SCSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETC
T ss_pred HHHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCC
Confidence 345555666666666655 3444332 1245555555544
No 48
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=1.2e-24 Score=202.60 Aligned_cols=266 Identities=26% Similarity=0.244 Sum_probs=145.5
Q ss_pred CccCCCCCCCCCccEEecCCCCCccccCCccCCeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCC
Q 017542 9 LRCFPQNIHFISSIKIDCYKCVNLREFPRISGNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKS 88 (369)
Q Consensus 9 l~~~p~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 88 (369)
++.+|.. .++|++|++++|. +..+|....+|++|++++|.++.++.. .++|++|++++|... .+| .++.+++
T Consensus 83 l~~lp~~--~~~L~~L~l~~n~-l~~lp~~~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~-~lp-~~~~l~~ 154 (454)
T 1jl5_A 83 LSSLPEL--PPHLESLVASCNS-LTELPELPQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLE-KLP-ELQNSSF 154 (454)
T ss_dssp CSCCCSC--CTTCSEEECCSSC-CSSCCCCCTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCS-SCC-CCTTCTT
T ss_pred cccCCCC--cCCCCEEEccCCc-CCccccccCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCC-CCc-ccCCCCC
Confidence 4555552 3567777777666 555666555677777766666655432 156777777776444 355 3666777
Q ss_pred CcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCc
Q 017542 89 LRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGL 168 (369)
Q Consensus 89 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 168 (369)
|++|++++|... .+|.. .++|++|++++|.... +| .+..+++|++|++++|.. ..+|.. .++|++|++++
T Consensus 155 L~~L~l~~N~l~-~lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l-~~l~~~---~~~L~~L~l~~ 224 (454)
T 1jl5_A 155 LKIIDVDNNSLK-KLPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSL-KKLPDL---PLSLESIVAGN 224 (454)
T ss_dssp CCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCC-SSCCCC---CTTCCEEECCS
T ss_pred CCEEECCCCcCc-ccCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcC-CcCCCC---cCcccEEECcC
Confidence 777777776433 34432 2466677776554333 44 456666666666666543 223322 23566666666
Q ss_pred ccCCCCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccchhh-
Q 017542 169 LAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSI- 247 (369)
Q Consensus 169 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~- 247 (369)
|.+..+|+ +..+++|++|++++|....+|.. +++|+.|++++|.+.+++.. +++|++|++++|.++.++...
T Consensus 225 n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l~~~~~ 297 (454)
T 1jl5_A 225 NILEELPE-LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGLSELPP 297 (454)
T ss_dssp SCCSSCCC-CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEESCCCT
T ss_pred CcCCcccc-cCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccccCcc---cCcCCEEECcCCccCcccCcCC
Confidence 66665553 55666666666666665555432 24566666666665554432 245555555555555433210
Q ss_pred ---------------ccC-CcCcEecccCCcccccCCCCCcccceeccccccccccCCCchhhhHHHhHH
Q 017542 248 ---------------SQL-SRLRWLYLVNCVKLQSLPELPLLLVMLGASDCKRLQFLPELTSCLEELDAS 301 (369)
Q Consensus 248 ---------------~~~-~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~l~~l~~~ 301 (369)
..+ ++|++|++++| .++.+|..+++|+.|+++++ +++.++....+++.|++.
T Consensus 298 ~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N-~l~~lp~~~~~L~~L~L~~N-~l~~lp~~l~~L~~L~L~ 365 (454)
T 1jl5_A 298 NLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIELPALPPRLERLIASFN-HLAEVPELPQNLKQLHVE 365 (454)
T ss_dssp TCCEEECCSSCCSEECCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECC
T ss_pred cCCEEECcCCcCCcccCCcCcCCEEECCCC-ccccccccCCcCCEEECCCC-ccccccchhhhccEEECC
Confidence 011 35555555555 34445554555566665554 344444434444444443
No 49
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=3e-25 Score=214.06 Aligned_cols=249 Identities=18% Similarity=0.161 Sum_probs=192.7
Q ss_pred CccCCCCC--CCCCccEEecCCCCCccccCC-ccC---CeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCcccccccc
Q 017542 9 LRCFPQNI--HFISSIKIDCYKCVNLREFPR-ISG---NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLST 81 (369)
Q Consensus 9 l~~~p~~~--~~~~L~~L~l~~~~~l~~~~~-~~~---~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~ 81 (369)
++.+|... .+++|++|++++|. +..++. .+. +|++|++++|.++.++. .+..+++|++|++++|......+.
T Consensus 63 l~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~ 141 (597)
T 3oja_B 63 MRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG 141 (597)
T ss_dssp ESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCcCHHHHccCCCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHH
Confidence 55667654 68888899998887 666553 443 88888888888887665 467888888888888765533334
Q ss_pred cccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhc----------------------------
Q 017542 82 SICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIEN---------------------------- 133 (369)
Q Consensus 82 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~---------------------------- 133 (369)
.+..+++|++|++++|......+..+..+++|++|++++|.........+..
T Consensus 142 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n 221 (597)
T 3oja_B 142 IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHN 221 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSS
T ss_pred HhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCC
Confidence 4578888888888888776666777888888888888877644321111111
Q ss_pred ---------CCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCC-CcccccCCCCcEEeecCCCCCCCCccccC
Q 017542 134 ---------LEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQA-PSSIVDLNKLETLSLFECRGLVLPPLLSG 203 (369)
Q Consensus 134 ---------l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 203 (369)
.++|+.|++++|.... +..+..+++|+.|++++|.+..+ |..+..+++|+.|++++|....+|..+..
T Consensus 222 ~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 299 (597)
T 3oja_B 222 SINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQP 299 (597)
T ss_dssp CCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSC
T ss_pred cccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCccccc
Confidence 1235555555543322 24578899999999999999865 67888999999999999998888888888
Q ss_pred CCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccchhhccCCcCcEecccCCc
Q 017542 204 LSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCV 262 (369)
Q Consensus 204 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~ 262 (369)
+++|+.|++++|.+..+|..+..+++|++|++++|.++.++ +..+++|+.|++++|+
T Consensus 300 l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 300 IPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp CTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSC
T ss_pred CCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCC
Confidence 99999999999999998888888999999999999999875 7788999999999995
No 50
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.93 E-value=1.4e-24 Score=213.01 Aligned_cols=144 Identities=19% Similarity=0.179 Sum_probs=92.4
Q ss_pred CCCCcCCccCCCC-C-CCCCccEEecCCCCCcccc-CCccC---CeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCcc
Q 017542 3 MAGCESLRCFPQN-I-HFISSIKIDCYKCVNLREF-PRISG---NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNS 75 (369)
Q Consensus 3 l~~c~~l~~~p~~-~-~~~~L~~L~l~~~~~l~~~-~~~~~---~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~ 75 (369)
+.++ +++.+|.. + .+++|++|++++|. +..+ |..+. +|++|++++|.++.+|. .+..+++|++|++++|..
T Consensus 32 Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l 109 (680)
T 1ziw_A 32 LTHN-QLRRLPAANFTRYSQLTSLDVGFNT-ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 109 (680)
T ss_dssp CCSS-CCCCCCGGGGGGGTTCSEEECCSSC-CCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC
T ss_pred CCCC-CCCCcCHHHHhCCCcCcEEECCCCc-cCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCcc
Confidence 3443 35556553 3 67778888888777 4444 33332 77888887777777765 477777888888887765
Q ss_pred cccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhh--cCCCCCeEeecCCCCC
Q 017542 76 LKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIE--NLEGLKQLKLTGCTKL 148 (369)
Q Consensus 76 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~ 148 (369)
....+..++++++|++|++++|......+..+..+++|++|++++|......+..+. .+++|++|++++|...
T Consensus 110 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 110 QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 444445677777788888877766655666667777777777776654443333332 3456666666665443
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=2.2e-25 Score=201.41 Aligned_cols=253 Identities=19% Similarity=0.189 Sum_probs=206.4
Q ss_pred cCCccCCCCCCCCCccEEecCCCCCccccCC-ccC---CeeEEecCCccCcccC-ccCCCCCCCCEEeCcCCcccccccc
Q 017542 7 ESLRCFPQNIHFISSIKIDCYKCVNLREFPR-ISG---NVVELNLMCTPIEEVP-LSIECLPNLETLEMSFCNSLKRLST 81 (369)
Q Consensus 7 ~~l~~~p~~~~~~~L~~L~l~~~~~l~~~~~-~~~---~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~ 81 (369)
.+++++|..+ .++|++|++++|. +..++. .+. +|++|++++|.++.++ ..+..+++|++|++++|......+.
T Consensus 41 ~~l~~iP~~~-~~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 118 (353)
T 2z80_A 41 GSLNSIPSGL-TEAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSS 118 (353)
T ss_dssp TTCSSCCTTC-CTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHH
T ss_pred CCcccccccc-cccCcEEECCCCc-CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHh
Confidence 3577888866 4689999999998 777765 343 9999999999999775 4689999999999999866544344
Q ss_pred cccCCCCCcEEecCCCcCCccCch--hhhccCccceeecccccccccc-chhhhcCCCCCeEeecCCCCCCCCCcccCCC
Q 017542 82 SICKLKSLRSLDLSYCINLESFPE--ILEKMELLEEINLEEASNIKEL-PSSIENLEGLKQLKLTGCTKLGSLPESLGNL 158 (369)
Q Consensus 82 ~~~~~~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l 158 (369)
.+.++++|++|++++|... .++. .+..+++|++|++++|.....+ +..+..+++|++|++++|......+..+..+
T Consensus 119 ~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 197 (353)
T 2z80_A 119 WFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSI 197 (353)
T ss_dssp HHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred HhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhcc
Confidence 4888999999999998655 4444 7889999999999988655544 5678899999999999988777678889999
Q ss_pred cchhhhccCcccCCCCCccc-ccCCCCcEEeecCCCCCCCCc----cccCCCCCcEEeccCCCCcc-----CCCCCCCCC
Q 017542 159 KSLERLHAGLLAIPQAPSSI-VDLNKLETLSLFECRGLVLPP----LLSGLSSLKKLELGDCEIME-----IPPDIGCLS 228 (369)
Q Consensus 159 ~~L~~L~l~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~ 228 (369)
++|++|++++|.+..++..+ ..+++|+.|++++|.....+. .......++.++++++.+.+ ++..+..++
T Consensus 198 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~ 277 (353)
T 2z80_A 198 QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQIS 277 (353)
T ss_dssp SEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCT
T ss_pred ccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhccc
Confidence 99999999999988776543 358999999999998655442 22345678899999888765 555677899
Q ss_pred CCCEEEccCCcCCccchhh-ccCCcCcEecccCCc
Q 017542 229 SLESLNLSGNNIESLPTSI-SQLSRLRWLYLVNCV 262 (369)
Q Consensus 229 ~L~~L~l~~~~l~~~~~~~-~~~~~L~~L~l~~~~ 262 (369)
+|++|++++|.++.+|..+ +.+++|++|++++|+
T Consensus 278 ~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 278 GLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCC
Confidence 9999999999999999775 899999999999995
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.92 E-value=7.6e-25 Score=193.87 Aligned_cols=232 Identities=21% Similarity=0.256 Sum_probs=194.5
Q ss_pred cCCccCCCCCCCCCccEEecCCCCCccccCCc-cC---CeeEEecCCccCccc---CccCCCCCCCCEEeCcCCcccccc
Q 017542 7 ESLRCFPQNIHFISSIKIDCYKCVNLREFPRI-SG---NVVELNLMCTPIEEV---PLSIECLPNLETLEMSFCNSLKRL 79 (369)
Q Consensus 7 ~~l~~~p~~~~~~~L~~L~l~~~~~l~~~~~~-~~---~L~~L~l~~~~~~~l---~~~~~~~~~L~~L~l~~~~~~~~~ 79 (369)
.+++++|..+ .+++++|++++|. +..+|.. +. +|++|++++|.++.+ +..+..+++|++|++++|... .+
T Consensus 17 ~~l~~ip~~~-~~~l~~L~L~~n~-l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l 93 (306)
T 2z66_A 17 KGLTSVPTGI-PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TM 93 (306)
T ss_dssp SCCSSCCSCC-CTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EE
T ss_pred CCcccCCCCC-CCCCCEEECCCCc-cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cC
Confidence 3577888866 4789999999998 7788753 33 999999999998754 455667899999999997654 56
Q ss_pred cccccCCCCCcEEecCCCcCCccCc-hhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCC-CCCcccCC
Q 017542 80 STSICKLKSLRSLDLSYCINLESFP-EILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLG-SLPESLGN 157 (369)
Q Consensus 80 ~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~ 157 (369)
+..+..+++|++|++++|......+ ..+..+++|++|++++|......+..+..+++|++|++++|.... ..+..+..
T Consensus 94 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 173 (306)
T 2z66_A 94 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 173 (306)
T ss_dssp EEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred hhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhh
Confidence 7778899999999999986554433 578899999999999888777777788999999999999976554 46778899
Q ss_pred CcchhhhccCcccCCCC-CcccccCCCCcEEeecCCCCCCCCc-cccCCCCCcEEeccCCCCcc-CCCCCCCC-CCCCEE
Q 017542 158 LKSLERLHAGLLAIPQA-PSSIVDLNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIME-IPPDIGCL-SSLESL 233 (369)
Q Consensus 158 l~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~-~~~~~~~~-~~L~~L 233 (369)
+++|++|++++|.+..+ +..+..+++|++|++++|....++. .+..+++|+.|++++|.+.+ .+..+..+ ++|++|
T Consensus 174 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L 253 (306)
T 2z66_A 174 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 253 (306)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEE
T ss_pred CcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEE
Confidence 99999999999999866 5678889999999999999777664 67889999999999999988 45556776 499999
Q ss_pred EccCCcCC
Q 017542 234 NLSGNNIE 241 (369)
Q Consensus 234 ~l~~~~l~ 241 (369)
++++|.++
T Consensus 254 ~L~~N~~~ 261 (306)
T 2z66_A 254 NLTQNDFA 261 (306)
T ss_dssp ECTTCCEE
T ss_pred EccCCCee
Confidence 99999887
No 53
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=2.3e-23 Score=193.85 Aligned_cols=250 Identities=24% Similarity=0.226 Sum_probs=180.5
Q ss_pred CCccCCCCCCCCCccEEecCCCCCccccCCccCCeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCC
Q 017542 8 SLRCFPQNIHFISSIKIDCYKCVNLREFPRISGNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLK 87 (369)
Q Consensus 8 ~l~~~p~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 87 (369)
.++.+|.. +++|++|++++|. +..++....+|++|++++|.++.+| .+..+++|++|++++|... .+|.. ..
T Consensus 102 ~l~~lp~~--~~~L~~L~l~~n~-l~~l~~~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~-~lp~~---~~ 173 (454)
T 1jl5_A 102 SLTELPEL--PQSLKSLLVDNNN-LKALSDLPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLK-KLPDL---PP 173 (454)
T ss_dssp CCSSCCCC--CTTCCEEECCSSC-CSCCCSCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCS-CCCCC---CT
T ss_pred cCCccccc--cCCCcEEECCCCc-cCcccCCCCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCc-ccCCC---cc
Confidence 45556653 4789999999987 7888776679999999999999888 4899999999999997654 45543 35
Q ss_pred CCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccC
Q 017542 88 SLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAG 167 (369)
Q Consensus 88 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 167 (369)
+|++|++++|.... +| .++.+++|++|++++|...+ +|.. .++|++|++++|. +..+|. +..+++|++|+++
T Consensus 174 ~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~l~ 245 (454)
T 1jl5_A 174 SLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNI-LEELPE-LQNLPFLTTIYAD 245 (454)
T ss_dssp TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSC-CSSCCC-CTTCTTCCEEECC
T ss_pred cccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCc-CCcccc-cCCCCCCCEEECC
Confidence 89999999875544 56 57889999999998776443 4332 2478888888864 346663 7788888888888
Q ss_pred cccCCCCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCC---C-------------CC-CCCC
Q 017542 168 LLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPD---I-------------GC-LSSL 230 (369)
Q Consensus 168 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~-------------~~-~~~L 230 (369)
+|.+..+|.. +++|+.|++++|....+|.. +++|+.|++++|.+.+++.. + .. .++|
T Consensus 246 ~N~l~~l~~~---~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L 319 (454)
T 1jl5_A 246 NNLLKTLPDL---PPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSL 319 (454)
T ss_dssp SSCCSSCCSC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTC
T ss_pred CCcCCccccc---ccccCEEECCCCcccccCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcC
Confidence 8887776653 36677777777775555543 24555555555555442211 0 11 2478
Q ss_pred CEEEccCCcCCccchhhccCCcCcEecccCCcccccCCCCCcccceecccccc
Q 017542 231 ESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPELPLLLVMLGASDCK 283 (369)
Q Consensus 231 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~c~ 283 (369)
++|++++|.++.+|.. +++|++|++++| .++.+|..+++|+.|++++++
T Consensus 320 ~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N-~l~~lp~~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 320 EELNVSNNKLIELPAL---PPRLERLIASFN-HLAEVPELPQNLKQLHVEYNP 368 (454)
T ss_dssp CEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSC
T ss_pred CEEECCCCcccccccc---CCcCCEEECCCC-ccccccchhhhccEEECCCCC
Confidence 8888888888877653 588999999988 677788777889999988764
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.92 E-value=9.1e-24 Score=184.99 Aligned_cols=218 Identities=23% Similarity=0.295 Sum_probs=187.9
Q ss_pred eEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccc
Q 017542 43 VELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEAS 122 (369)
Q Consensus 43 ~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 122 (369)
++++.+++.++.+|..+ .++|++|++++|......+..+..+++|++|++++|......+..+..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 57788888899988643 5799999999987666555678899999999999987766668889999999999999887
Q ss_pred ccccc-chhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCc-ccccCCCCcEEeecCCCCCCCCc-
Q 017542 123 NIKEL-PSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPS-SIVDLNKLETLSLFECRGLVLPP- 199 (369)
Q Consensus 123 ~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~- 199 (369)
.+..+ +..+..+++|++|++++|......+..+..+++|++|++++|.+..++. .+..+++|++|++++|....++.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 171 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER 171 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHH
Confidence 45544 6788999999999999987666667778999999999999999998765 47889999999999999877775
Q ss_pred cccCCCCCcEEeccCCCCccC-CCCCCCCCCCCEEEccCCcCCccc-hhhccCCcCcEecccCCc
Q 017542 200 LLSGLSSLKKLELGDCEIMEI-PPDIGCLSSLESLNLSGNNIESLP-TSISQLSRLRWLYLVNCV 262 (369)
Q Consensus 200 ~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~ 262 (369)
.+..+++|+.|++++|.+.++ +..+..+++|++|++++|.++.++ ..+..+++|++|++++|+
T Consensus 172 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred HhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 588899999999999999884 777888999999999999999877 458899999999999995
No 55
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=2.3e-26 Score=204.13 Aligned_cols=240 Identities=17% Similarity=0.115 Sum_probs=187.2
Q ss_pred CCCCccEEecCCCCCccccCCccC-CeeEEecCCccCc--ccCccCC-------CCCCCCEEeCcCCcccccccccc--c
Q 017542 17 HFISSIKIDCYKCVNLREFPRISG-NVVELNLMCTPIE--EVPLSIE-------CLPNLETLEMSFCNSLKRLSTSI--C 84 (369)
Q Consensus 17 ~~~~L~~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~--~l~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~--~ 84 (369)
..++|+.+++++|. + .+|..++ .|+.|+++++.++ .++..+. .+++|++|++++|...+.+|..+ .
T Consensus 41 ~~~~L~~l~l~~n~-l-~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 41 GGRSLEYLLKRVDT-E-ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp EEEECTTHHHHCCT-T-CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred cCCCceeEeecccc-c-ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 45668888888888 4 6776544 7888899888885 3454343 68899999999988777777765 7
Q ss_pred CCCCCcEEecCCCcCCccCchhhhcc-----CccceeeccccccccccchhhhcCCCCCeEeecCCCCCCC--CCccc--
Q 017542 85 KLKSLRSLDLSYCINLESFPEILEKM-----ELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGS--LPESL-- 155 (369)
Q Consensus 85 ~~~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~-- 155 (369)
.+++|++|++++|..... |..++.+ ++|++|++++|......+..+..+++|++|++++|...+. .+..+
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 899999999999866555 7777777 8999999998877666667888999999999999775543 22233
Q ss_pred CCCcchhhhccCcccCCCCCc----ccccCCCCcEEeecCCCCCCCC--ccccCCCCCcEEeccCCCCccCCCCCCCCCC
Q 017542 156 GNLKSLERLHAGLLAIPQAPS----SIVDLNKLETLSLFECRGLVLP--PLLSGLSSLKKLELGDCEIMEIPPDIGCLSS 229 (369)
Q Consensus 156 ~~l~~L~~L~l~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 229 (369)
..+++|++|++++|.+..++. .+..+++|++|++++|.....+ ..+..+++|++|++++|.+..+|..+. ++
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~ 275 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AK 275 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SE
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CC
Confidence 788899999999998874432 2346789999999999866544 345567889999999999988877665 78
Q ss_pred CCEEEccCCcCCccchhhccCCcCcEecccCCc
Q 017542 230 LESLNLSGNNIESLPTSISQLSRLRWLYLVNCV 262 (369)
Q Consensus 230 L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~ 262 (369)
|++|++++|.++.+|. +..+++|++|++++|+
T Consensus 276 L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 276 LSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp EEEEECCSSCCCSCCC-TTTSCEEEEEECTTCT
T ss_pred ceEEECCCCCCCCChh-HhhCCCCCEEeccCCC
Confidence 9999999999998876 8888999999999883
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=2.6e-23 Score=193.30 Aligned_cols=239 Identities=21% Similarity=0.190 Sum_probs=200.9
Q ss_pred CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccc
Q 017542 41 NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEE 120 (369)
Q Consensus 41 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 120 (369)
..+.++.++..++.+|..+. +++++|++++|......+..+.++++|++|++++|......+..+..+++|++|++++
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 46678888888999997654 7899999999877666667889999999999999887776778899999999999998
Q ss_pred cccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcc-cCCCCCc-ccccCCCCcEEeecCCCCCCCC
Q 017542 121 ASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLL-AIPQAPS-SIVDLNKLETLSLFECRGLVLP 198 (369)
Q Consensus 121 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~ 198 (369)
|......+..+..+++|++|++++|......+..+..+++|++|+++++ .+..++. .+..+++|++|++++|....+|
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 201 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP 201 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc
Confidence 8665555557889999999999997755545557889999999999985 4555543 6788999999999999988888
Q ss_pred ccccCCCCCcEEeccCCCCccC-CCCCCCCCCCCEEEccCCcCCccc-hhhccCCcCcEecccCCcccccCCC----CCc
Q 017542 199 PLLSGLSSLKKLELGDCEIMEI-PPDIGCLSSLESLNLSGNNIESLP-TSISQLSRLRWLYLVNCVKLQSLPE----LPL 272 (369)
Q Consensus 199 ~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~----~~~ 272 (369)
. +..+++|+.|++++|.+.++ +..+..+++|++|++++|.++.++ ..+..+++|++|++++| .++.++. ..+
T Consensus 202 ~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~ 279 (440)
T 3zyj_A 202 N-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLH 279 (440)
T ss_dssp C-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCT
T ss_pred c-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhcccc
Confidence 5 78899999999999999985 667889999999999999999664 56789999999999999 6777664 236
Q ss_pred ccceecccccc
Q 017542 273 LLVMLGASDCK 283 (369)
Q Consensus 273 ~L~~L~l~~c~ 283 (369)
+|+.|++.+++
T Consensus 280 ~L~~L~L~~Np 290 (440)
T 3zyj_A 280 HLERIHLHHNP 290 (440)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEEcCCCC
Confidence 78888888765
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.91 E-value=2.4e-23 Score=194.22 Aligned_cols=239 Identities=23% Similarity=0.205 Sum_probs=200.8
Q ss_pred CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccc
Q 017542 41 NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEE 120 (369)
Q Consensus 41 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 120 (369)
....++.++..++.+|..+. +++++|++++|......+..+.++++|++|++++|......+..+..+++|++|++++
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 45678888888899987554 6999999999887776677899999999999999987777778899999999999998
Q ss_pred cccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcc-cCCCCCc-ccccCCCCcEEeecCCCCCCCC
Q 017542 121 ASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLL-AIPQAPS-SIVDLNKLETLSLFECRGLVLP 198 (369)
Q Consensus 121 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~ 198 (369)
|......+..+..+++|++|++++|......+..+..+++|++|+++++ .+..++. .+..+++|+.|++++|....+|
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 212 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP 212 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc
Confidence 8766555566889999999999997755444557889999999999984 4555543 5788999999999999988887
Q ss_pred ccccCCCCCcEEeccCCCCccC-CCCCCCCCCCCEEEccCCcCCcc-chhhccCCcCcEecccCCcccccCCC----CCc
Q 017542 199 PLLSGLSSLKKLELGDCEIMEI-PPDIGCLSSLESLNLSGNNIESL-PTSISQLSRLRWLYLVNCVKLQSLPE----LPL 272 (369)
Q Consensus 199 ~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~----~~~ 272 (369)
. +..+++|+.|++++|.+.++ +..+..+++|++|++++|.++.+ +..+..+++|++|++++| .++.++. ..+
T Consensus 213 ~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~ 290 (452)
T 3zyi_A 213 N-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLR 290 (452)
T ss_dssp C-CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCT
T ss_pred c-ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhcccc
Confidence 5 77889999999999999985 56688999999999999999966 467889999999999999 6777764 246
Q ss_pred ccceecccccc
Q 017542 273 LLVMLGASDCK 283 (369)
Q Consensus 273 ~L~~L~l~~c~ 283 (369)
+|+.|++.+++
T Consensus 291 ~L~~L~L~~Np 301 (452)
T 3zyi_A 291 YLVELHLHHNP 301 (452)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEEccCCC
Confidence 78899988775
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=6.4e-25 Score=195.25 Aligned_cols=237 Identities=18% Similarity=0.093 Sum_probs=118.8
Q ss_pred CCCccEEecCCCCCccccC-Ccc---CCeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEe
Q 017542 18 FISSIKIDCYKCVNLREFP-RIS---GNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLD 93 (369)
Q Consensus 18 ~~~L~~L~l~~~~~l~~~~-~~~---~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 93 (369)
+++|++|++++|. +..++ ..+ .+|++|++++|.++.++. +..+++|++|++++|... .++ ..++|++|+
T Consensus 33 ~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~-~l~----~~~~L~~L~ 105 (317)
T 3o53_A 33 AWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQ-ELL----VGPSIETLH 105 (317)
T ss_dssp GGGCSEEECTTSC-CCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEE-EEE----ECTTCCEEE
T ss_pred CCCCCEEECcCCc-cCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccc-ccc----CCCCcCEEE
Confidence 3455555555555 33333 222 255555555555554433 555555555555554322 222 235555555
Q ss_pred cCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCccc-CCCcchhhhccCcccCC
Q 017542 94 LSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESL-GNLKSLERLHAGLLAIP 172 (369)
Q Consensus 94 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~ 172 (369)
+++|......+. .+++|++|++++|......+..+..+++|++|++++|......+..+ ..+++|++|++++|.+.
T Consensus 106 l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 182 (317)
T 3o53_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (317)
T ss_dssp CCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence 555543332221 24555555555554444333445555555555555544333222222 24555555555555555
Q ss_pred CCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCC--ccchhhccC
Q 017542 173 QAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIE--SLPTSISQL 250 (369)
Q Consensus 173 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~--~~~~~~~~~ 250 (369)
.++.. ..+++|++|++++|....++..+..+++|+.|++++|.+..++..+..+++|++|++++|.++ .++..+..+
T Consensus 183 ~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~ 261 (317)
T 3o53_A 183 DVKGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261 (317)
T ss_dssp EEECC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTC
T ss_pred ccccc-cccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhcc
Confidence 44322 235555555555555555554455555555555555555555555555555555555555555 444455555
Q ss_pred CcCcEecccCCcccc
Q 017542 251 SRLRWLYLVNCVKLQ 265 (369)
Q Consensus 251 ~~L~~L~l~~~~~l~ 265 (369)
++|+.++++++..++
T Consensus 262 ~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 262 QRVQTVAKQTVKKLT 276 (317)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred ccceEEECCCchhcc
Confidence 555555555544443
No 59
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.91 E-value=9.1e-23 Score=198.29 Aligned_cols=136 Identities=20% Similarity=0.154 Sum_probs=85.9
Q ss_pred CCccCCCCCCCCCccEEecCCCCCccccCC-ccC---CeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCccccccccc
Q 017542 8 SLRCFPQNIHFISSIKIDCYKCVNLREFPR-ISG---NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTS 82 (369)
Q Consensus 8 ~l~~~p~~~~~~~L~~L~l~~~~~l~~~~~-~~~---~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~ 82 (369)
+++++|..+ .+++++|++++|. ++.++. .+. +|++|++++|.++.++. .|..+++|++|+|++|......+..
T Consensus 42 ~l~~vP~~l-p~~~~~LdLs~N~-i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~ 119 (635)
T 4g8a_A 42 NFYKIPDNL-PFSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 119 (635)
T ss_dssp CCSSCCSSS-CTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGG
T ss_pred CcCccCCCC-CcCCCEEEeeCCC-CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHH
Confidence 566777655 3457777777777 666653 233 77777777777776654 4677777777777776544333345
Q ss_pred ccCCCCCcEEecCCCcCCccCchhhhccCccceeecccccccc-ccchhhhcCCCCCeEeecCC
Q 017542 83 ICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIK-ELPSSIENLEGLKQLKLTGC 145 (369)
Q Consensus 83 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~ 145 (369)
|.++++|++|++++|......+..++.+++|++|++++|.... ..|..+..+++|++|++++|
T Consensus 120 f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 120 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp GTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred hcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence 6667777777777765544444456667777777776665433 34455556666666666554
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.90 E-value=5.3e-24 Score=189.34 Aligned_cols=284 Identities=16% Similarity=0.133 Sum_probs=183.3
Q ss_pred CccEEecCCCCCccccCC----ccCCeeEEecCCccCcccC-ccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEec
Q 017542 20 SSIKIDCYKCVNLREFPR----ISGNVVELNLMCTPIEEVP-LSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDL 94 (369)
Q Consensus 20 ~L~~L~l~~~~~l~~~~~----~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 94 (369)
.++..+++.+. +..++. ...+|++|++++|.++.++ ..+..+++|++|++++|...+..+ +..+++|++|++
T Consensus 11 ~l~i~~ls~~~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 11 RYKIEKVTDSS-LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp EEEEESCCTTT-HHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred ceeEeeccccc-hhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 35566666665 443322 2237888888888888665 467788888888888876544333 777888888888
Q ss_pred CCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCC
Q 017542 95 SYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQA 174 (369)
Q Consensus 95 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 174 (369)
++|... .++ ..++|++|++++|......+. .+++|++|++++|......+..+..+++|++|++++|.+..+
T Consensus 88 s~n~l~-~l~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 88 NNNYVQ-ELL----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp CSSEEE-EEE----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred cCCccc-ccc----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence 887533 222 347888888887765443332 356788888888665554455667778888888888877754
Q ss_pred C-ccc-ccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccchhhccCCc
Q 017542 175 P-SSI-VDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSR 252 (369)
Q Consensus 175 ~-~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 252 (369)
+ ..+ ..+++|++|++++|....++.. ..+++|+.|++++|.+.+++..+..+++|++|++++|.++.+|..+..+++
T Consensus 160 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~ 238 (317)
T 3o53_A 160 NFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQN 238 (317)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTT
T ss_pred cHHHHhhccCcCCEEECCCCcCcccccc-cccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCC
Confidence 3 333 3567888888888876666542 346778888888888877766677777888888888888877777777788
Q ss_pred CcEecccCCcccccCCCCCcccceeccccccccccCCCchhhhHHHhHHHHHhhhccccccccCCCCCcEEEecCccCcc
Q 017542 253 LRWLYLVNCVKLQSLPELPLLLVMLGASDCKRLQFLPELTSCLEELDASILQALSNRTGERLSKHMSPVQLIFANCLKLN 332 (369)
Q Consensus 253 L~~L~l~~~~~l~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~l~ 332 (369)
|++|++++|+. . |..+...-...+.++.+++..+..++........ ........-..|..++
T Consensus 239 L~~L~l~~N~~-~----------------~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~-~~~~~~~~~~cc~~l~ 300 (317)
T 3o53_A 239 LEHFDLRGNGF-H----------------CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT-VPTLGHYGAYCCEDLP 300 (317)
T ss_dssp CCEEECTTCCC-B----------------HHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCCCS-STTCEEETTEEEBCCT
T ss_pred CCEEEccCCCc-c----------------CcCHHHHHhccccceEEECCCchhccCCchhccC-CCceecccceeeccCC
Confidence 88888887742 2 1111111123456777777777766543222211 1122233344677776
Q ss_pred h
Q 017542 333 E 333 (369)
Q Consensus 333 ~ 333 (369)
.
T Consensus 301 ~ 301 (317)
T 3o53_A 301 A 301 (317)
T ss_dssp T
T ss_pred h
Confidence 4
No 61
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.90 E-value=6.5e-22 Score=189.84 Aligned_cols=243 Identities=22% Similarity=0.213 Sum_probs=175.4
Q ss_pred cCCccCCCCCCCCCccEEecCCCCCccccCCccCCeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCC
Q 017542 7 ESLRCFPQNIHFISSIKIDCYKCVNLREFPRISGNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKL 86 (369)
Q Consensus 7 ~~l~~~p~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 86 (369)
.+++.+|..+. ++|++|++++|. +..+|..+.+|++|++++|.++.+|. .+++|++|++++|.. ..+|. .+
T Consensus 50 n~L~~lp~~l~-~~L~~L~L~~N~-l~~lp~~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l-~~l~~---~l 120 (622)
T 3g06_A 50 SGLTTLPDCLP-AHITTLVIPDNN-LTSLPALPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPL-THLPA---LP 120 (622)
T ss_dssp SCCSCCCSCCC-TTCSEEEECSCC-CSCCCCCCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCC-CCCCC---CC
T ss_pred CCcCccChhhC-CCCcEEEecCCC-CCCCCCcCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcC-CCCCC---CC
Confidence 35778888764 889999999998 88888877799999999999998886 578999999998754 44554 46
Q ss_pred CCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhcc
Q 017542 87 KSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHA 166 (369)
Q Consensus 87 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 166 (369)
++|+.|++++|... .+|.. +++|++|++++|... .++. .+++|+.|++++|. +..++ ..+++|+.|++
T Consensus 121 ~~L~~L~L~~N~l~-~lp~~---l~~L~~L~Ls~N~l~-~l~~---~~~~L~~L~L~~N~-l~~l~---~~~~~L~~L~L 188 (622)
T 3g06_A 121 SGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLA-SLPA---LPSELCKLWAYNNQ-LTSLP---MLPSGLQELSV 188 (622)
T ss_dssp TTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSC-CSCCC---CCCTTCCEEEC
T ss_pred CCcCEEECCCCCCC-cCCCC---CCCCCEEECcCCcCC-CcCC---ccCCCCEEECCCCC-CCCCc---ccCCCCcEEEC
Confidence 88999999987543 45543 488999999977543 4443 34678888888754 44455 34677888888
Q ss_pred CcccCCCCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccchh
Q 017542 167 GLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTS 246 (369)
Q Consensus 167 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 246 (369)
++|.+..+|.. +++|+.|++++|....+|.. +++|+.|++++|.+..++ ..+++|++|++++|.++.+|.
T Consensus 189 s~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~- 258 (622)
T 3g06_A 189 SDNQLASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM- 258 (622)
T ss_dssp CSSCCSCCCCC---CTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-
T ss_pred CCCCCCCCCCc---cchhhEEECcCCcccccCCC---CCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc-
Confidence 88888776653 36777888887777666643 367778888888777765 345677788888887777775
Q ss_pred hccCCcCcEecccCCcccccCCCC---Ccccceecccccc
Q 017542 247 ISQLSRLRWLYLVNCVKLQSLPEL---PLLLVMLGASDCK 283 (369)
Q Consensus 247 ~~~~~~L~~L~l~~~~~l~~~~~~---~~~L~~L~l~~c~ 283 (369)
.+++|++|++++| .++.+|.. .++|+.|++++++
T Consensus 259 --~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 259 --LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp --CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred --ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCC
Confidence 5677778888777 56666542 2455666665554
No 62
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=1.9e-22 Score=175.74 Aligned_cols=214 Identities=21% Similarity=0.229 Sum_probs=125.8
Q ss_pred EecCCCCCccccCCccC-CeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCc
Q 017542 24 IDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLE 101 (369)
Q Consensus 24 L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 101 (369)
.+..+.. +..+|..++ +|++|+++++.++.++. .+..+++|++|++++|......+..+..+++|++|++++|....
T Consensus 12 ~~c~~~~-l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 90 (276)
T 2z62_A 12 YQCMELN-FYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90 (276)
T ss_dssp EECTTSC-CSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred EEecCCC-ccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc
Confidence 3444433 555665444 56666666666665544 45566666666666654443333345556666666666654444
Q ss_pred cCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCC--CCcccc
Q 017542 102 SFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQ--APSSIV 179 (369)
Q Consensus 102 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~l~ 179 (369)
..+..+..+++|++|++++|...... +..+..+++|++|++++|.+.. +|..+.
T Consensus 91 ~~~~~~~~l~~L~~L~l~~n~l~~~~------------------------~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~ 146 (276)
T 2z62_A 91 LALGAFSGLSSLQKLVAVETNLASLE------------------------NFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146 (276)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCCST------------------------TCCCTTCTTCCEEECCSSCCCCCCCCGGGG
T ss_pred cChhhhcCCccccEEECCCCCccccC------------------------chhcccCCCCCEEECcCCccceecCchhhc
Confidence 44444555555555555544333222 2234445555555555555543 455666
Q ss_pred cCCCCcEEeecCCCCCCCC-ccccCCCCCc----EEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccchh-hccCCcC
Q 017542 180 DLNKLETLSLFECRGLVLP-PLLSGLSSLK----KLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTS-ISQLSRL 253 (369)
Q Consensus 180 ~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~----~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~L 253 (369)
.+++|++|++++|....++ ..+..+++|+ .|++++|.+..++.......+|++|++++|.++.++.. +..+++|
T Consensus 147 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 226 (276)
T 2z62_A 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSL 226 (276)
T ss_dssp GCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSC
T ss_pred cCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccc
Confidence 6677777777777655443 2343344444 77888888777665555556788888888888877644 4778888
Q ss_pred cEecccCCc
Q 017542 254 RWLYLVNCV 262 (369)
Q Consensus 254 ~~L~l~~~~ 262 (369)
++|++++|+
T Consensus 227 ~~L~l~~N~ 235 (276)
T 2z62_A 227 QKIWLHTNP 235 (276)
T ss_dssp CEEECCSSC
T ss_pred cEEEccCCc
Confidence 888888874
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.89 E-value=1.1e-21 Score=188.35 Aligned_cols=237 Identities=26% Similarity=0.267 Sum_probs=195.7
Q ss_pred CCccEEecCCCCCccccCCccC-CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCC
Q 017542 19 ISSIKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYC 97 (369)
Q Consensus 19 ~~L~~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 97 (369)
.+++.|+++++. +..+|..++ +|++|++++|.++.+|. .+++|++|++++|.. +.+|. .+++|++|++++|
T Consensus 40 ~~l~~L~ls~n~-L~~lp~~l~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l-~~lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 40 NGNAVLNVGESG-LTTLPDCLPAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQL-TSLPV---LPPGLLELSIFSN 111 (622)
T ss_dssp HCCCEEECCSSC-CSCCCSCCCTTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCC-SCCCC---CCTTCCEEEECSC
T ss_pred CCCcEEEecCCC-cCccChhhCCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcC-CcCCC---CCCCCCEEECcCC
Confidence 358999999998 889998665 99999999999999887 578999999999764 45665 6799999999997
Q ss_pred cCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcc
Q 017542 98 INLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSS 177 (369)
Q Consensus 98 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 177 (369)
... .+|. .+++|++|++++|. +..+|.. +++|++|++++|. ++.++. .+++|+.|++++|.+..+|
T Consensus 112 ~l~-~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~-l~~l~~---~~~~L~~L~L~~N~l~~l~-- 177 (622)
T 3g06_A 112 PLT-HLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQ-LASLPA---LPSELCKLWAYNNQLTSLP-- 177 (622)
T ss_dssp CCC-CCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCSCCC--
T ss_pred cCC-CCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCc-CCCcCC---ccCCCCEEECCCCCCCCCc--
Confidence 544 4554 67899999999776 4445553 5899999999974 455554 3567899999999999987
Q ss_pred cccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccchhhccCCcCcEec
Q 017542 178 IVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLY 257 (369)
Q Consensus 178 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~ 257 (369)
..+++|+.|++++|....+|.. .++|+.|++++|.+..++.. +++|++|++++|.++.+| ..+++|++|+
T Consensus 178 -~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~ 247 (622)
T 3g06_A 178 -MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLP---VLPSELKELM 247 (622)
T ss_dssp -CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCC---CCCTTCCEEE
T ss_pred -ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccCCC---CCCCCEEEccCCccCcCC---CCCCcCcEEE
Confidence 4568999999999998887764 47899999999999987753 479999999999999988 4678999999
Q ss_pred ccCCcccccCCCCCcccceeccccccccccCC
Q 017542 258 LVNCVKLQSLPELPLLLVMLGASDCKRLQFLP 289 (369)
Q Consensus 258 l~~~~~l~~~~~~~~~L~~L~l~~c~~L~~l~ 289 (369)
+++| .++.+|..+++|+.|++++| .+..++
T Consensus 248 Ls~N-~L~~lp~~~~~L~~L~Ls~N-~L~~lp 277 (622)
T 3g06_A 248 VSGN-RLTSLPMLPSGLLSLSVYRN-QLTRLP 277 (622)
T ss_dssp CCSS-CCSCCCCCCTTCCEEECCSS-CCCSCC
T ss_pred CCCC-CCCcCCcccccCcEEeCCCC-CCCcCC
Confidence 9999 78889888889999999887 444443
No 64
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=2.7e-22 Score=174.81 Aligned_cols=212 Identities=20% Similarity=0.163 Sum_probs=156.9
Q ss_pred CCccCCCCCCCCCccEEecCCCCCccccCC-ccC---CeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCccccccccc
Q 017542 8 SLRCFPQNIHFISSIKIDCYKCVNLREFPR-ISG---NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTS 82 (369)
Q Consensus 8 ~l~~~p~~~~~~~L~~L~l~~~~~l~~~~~-~~~---~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~ 82 (369)
++..+|..+ .++|++|++++|. +..++. .+. +|++|++++|.++.++. .+..+++|++|++++|......+..
T Consensus 18 ~l~~ip~~l-~~~l~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (276)
T 2z62_A 18 NFYKIPDNL-PFSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 95 (276)
T ss_dssp CCSSCCSSS-CTTCCEEECTTCC-CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred CccccCCCC-CCCccEEECCCCc-ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhh
Confidence 355678766 3679999999998 777664 343 99999999999998765 6889999999999998776666677
Q ss_pred ccCCCCCcEEecCCCcCCccCchhhhccCccceeecccccccc-ccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcch
Q 017542 83 ICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIK-ELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSL 161 (369)
Q Consensus 83 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 161 (369)
+.++++|++|++++|......+..+..+++|++|++++|.... .+|..+..+++|++|++++|......+..+..++++
T Consensus 96 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 175 (276)
T 2z62_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (276)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred hcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhc
Confidence 8999999999999987666555568899999999999877655 357778888888888888865433322223222222
Q ss_pred hhhccCcccCCCCCcccccCCCCc-EEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCC-CCCCCCCCEEEccCCc
Q 017542 162 ERLHAGLLAIPQAPSSIVDLNKLE-TLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPD-IGCLSSLESLNLSGNN 239 (369)
Q Consensus 162 ~~L~l~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~ 239 (369)
+ .+. +|++++|....++.......+|+.|++++|.+..++.. +..+++|++|++++|.
T Consensus 176 ~--------------------~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 176 P--------------------LLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp T--------------------TCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred c--------------------ccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence 2 222 66777777665555444445788888888888776554 4678888888888887
Q ss_pred CC
Q 017542 240 IE 241 (369)
Q Consensus 240 l~ 241 (369)
++
T Consensus 236 ~~ 237 (276)
T 2z62_A 236 WD 237 (276)
T ss_dssp BC
T ss_pred cc
Confidence 65
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=2.6e-23 Score=195.25 Aligned_cols=231 Identities=17% Similarity=0.088 Sum_probs=157.0
Q ss_pred CCCccEEecCCCCCccccC-CccC---CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEe
Q 017542 18 FISSIKIDCYKCVNLREFP-RISG---NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLD 93 (369)
Q Consensus 18 ~~~L~~L~l~~~~~l~~~~-~~~~---~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 93 (369)
+++|++|++++|. +..++ ..+. +|++|++++|.++.++. +..+++|++|++++|... .++. .++|++|+
T Consensus 33 ~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~-~l~~----~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQ-ELLV----GPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSC-CCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEE-EEEE----CTTCCEEE
T ss_pred CCCccEEEeeCCc-CCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCC-CCCC----CCCcCEEE
Confidence 3467788888777 55443 3333 77778887777775544 677777888888776432 3332 36777888
Q ss_pred cCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccC-CCcchhhhccCcccCC
Q 017542 94 LSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLG-NLKSLERLHAGLLAIP 172 (369)
Q Consensus 94 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~ 172 (369)
+++|......+. .+++|++|++++|......+..+..+++|+.|++++|...+..+..+. .+++|+.|++++|.+.
T Consensus 106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 877655443332 456777777777666555566677777777787777665554555453 5777777777777777
Q ss_pred CCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCC--ccchhhccC
Q 017542 173 QAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIE--SLPTSISQL 250 (369)
Q Consensus 173 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~--~~~~~~~~~ 250 (369)
.++. ...+++|+.|++++|....+|..+..+++|+.|++++|.+.++|..+..+++|+.|++++|.+. .+|..+..+
T Consensus 183 ~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l 261 (487)
T 3oja_A 183 DVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261 (487)
T ss_dssp EEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTC
T ss_pred cccc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhC
Confidence 6543 3346777777777777766666677777777777777777777777777777777777777776 566666777
Q ss_pred CcCcEeccc
Q 017542 251 SRLRWLYLV 259 (369)
Q Consensus 251 ~~L~~L~l~ 259 (369)
+.|+.++++
T Consensus 262 ~~L~~l~~~ 270 (487)
T 3oja_A 262 QRVQTVAKQ 270 (487)
T ss_dssp HHHHHHHHH
T ss_pred CCCcEEecc
Confidence 777777665
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.89 E-value=4.3e-24 Score=189.49 Aligned_cols=235 Identities=19% Similarity=0.165 Sum_probs=186.2
Q ss_pred CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccc-ccccccc-------CCCCCcEEecCCCcCCccCchhh--hcc
Q 017542 41 NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLK-RLSTSIC-------KLKSLRSLDLSYCINLESFPEIL--EKM 110 (369)
Q Consensus 41 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~--~~l 110 (369)
+|++|+++++.+ .+|..+... |++|++++|.... .++..+. .+++|++|++++|......|..+ ..+
T Consensus 44 ~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 120 (312)
T 1wwl_A 44 SLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG 120 (312)
T ss_dssp ECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCS
T ss_pred CceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcC
Confidence 688888888888 777654433 8889999876632 4555444 68999999999988777777765 899
Q ss_pred CccceeeccccccccccchhhhcC-----CCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCC---CCccc--cc
Q 017542 111 ELLEEINLEEASNIKELPSSIENL-----EGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQ---APSSI--VD 180 (369)
Q Consensus 111 ~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~---~~~~l--~~ 180 (369)
++|++|++++|..... |..+..+ ++|++|++++|......+..++.+++|++|++++|.+.+ ++..+ ..
T Consensus 121 ~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 199 (312)
T 1wwl_A 121 PDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199 (312)
T ss_dssp CCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred CCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence 9999999998876555 7777776 899999999987766666789999999999999998653 23333 77
Q ss_pred CCCCcEEeecCCCCCCCC----ccccCCCCCcEEeccCCCCccCC--CCCCCCCCCCEEEccCCcCCccchhhccCCcCc
Q 017542 181 LNKLETLSLFECRGLVLP----PLLSGLSSLKKLELGDCEIMEIP--PDIGCLSSLESLNLSGNNIESLPTSISQLSRLR 254 (369)
Q Consensus 181 ~~~L~~L~l~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~ 254 (369)
+++|++|++++|....++ ..+..+++|+.|++++|.+.+.+ ..+..+++|++|++++|.++.+|..+. ++|+
T Consensus 200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~ 277 (312)
T 1wwl_A 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLS 277 (312)
T ss_dssp CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEE
T ss_pred CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCce
Confidence 899999999999976443 23457789999999999998844 345668999999999999999998776 8999
Q ss_pred EecccCCcccccCCC--CCcccceeccccc
Q 017542 255 WLYLVNCVKLQSLPE--LPLLLVMLGASDC 282 (369)
Q Consensus 255 ~L~l~~~~~l~~~~~--~~~~L~~L~l~~c 282 (369)
+|++++| .++.+|. ..++|+.|++++.
T Consensus 278 ~L~Ls~N-~l~~~p~~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 278 VLDLSYN-RLDRNPSPDELPQVGNLSLKGN 306 (312)
T ss_dssp EEECCSS-CCCSCCCTTTSCEEEEEECTTC
T ss_pred EEECCCC-CCCCChhHhhCCCCCEEeccCC
Confidence 9999999 6777665 2356777777654
No 67
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.88 E-value=3.8e-22 Score=193.92 Aligned_cols=149 Identities=21% Similarity=0.235 Sum_probs=120.1
Q ss_pred cEEecCCCCCccccCCccC-CeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcC
Q 017542 22 IKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCIN 99 (369)
Q Consensus 22 ~~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 99 (369)
+..+.++.. +..||..++ ++++|++++|.++.++. .|.++++|++|++++|......+.+|.++++|++|++++|..
T Consensus 34 ~~~~c~~~~-l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l 112 (635)
T 4g8a_A 34 ITYQCMELN-FYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 112 (635)
T ss_dssp TEEECTTSC-CSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred CEEECCCCC-cCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC
Confidence 355666655 889998777 99999999999999875 689999999999999876555556789999999999999876
Q ss_pred CccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCC-CCCcccCCCcchhhhccCcccC
Q 017542 100 LESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLG-SLPESLGNLKSLERLHAGLLAI 171 (369)
Q Consensus 100 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~ 171 (369)
....+..+..+++|++|++++|......+..+.++++|++|++++|.... ..+..+..+++|++|++++|.+
T Consensus 113 ~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 113 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp CEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred CCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence 65566788999999999999887655555578999999999999976543 3456666777777777666544
No 68
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.87 E-value=5.9e-21 Score=165.66 Aligned_cols=98 Identities=17% Similarity=0.190 Sum_probs=44.5
Q ss_pred ccEEecCCCCCccccCCccC-CeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCc
Q 017542 21 SIKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCI 98 (369)
Q Consensus 21 L~~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 98 (369)
.+.++++++. +..+|..++ ++++|+++++.++.++. .+..+++|++|++++|......+..+..+++|++|++++|.
T Consensus 18 ~~~l~~~~~~-l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~ 96 (270)
T 2o6q_A 18 KNSVDCSSKK-LTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96 (270)
T ss_dssp TTEEECTTSC-CSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCEEEccCCC-CCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc
Confidence 4455555555 555554333 55555555555554443 34555555555555543332222223444555555555443
Q ss_pred CCccCchhhhccCccceeecc
Q 017542 99 NLESFPEILEKMELLEEINLE 119 (369)
Q Consensus 99 ~~~~~~~~~~~l~~L~~L~l~ 119 (369)
.....+..+..+++|++|+++
T Consensus 97 l~~~~~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 97 LQALPIGVFDQLVNLAELRLD 117 (270)
T ss_dssp CCCCCTTTTTTCSSCCEEECC
T ss_pred CCcCCHhHcccccCCCEEECC
Confidence 332222333333444444443
No 69
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.87 E-value=6.9e-21 Score=165.24 Aligned_cols=199 Identities=20% Similarity=0.256 Sum_probs=168.7
Q ss_pred CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccc
Q 017542 41 NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEE 120 (369)
Q Consensus 41 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 120 (369)
..++++++++.++.+|..+. +++++|++++|......+..+.++++|++|++++|......+..+..+++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 67889999999999987554 6899999999876555455788999999999999876655556678999999999998
Q ss_pred cccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcc-cccCCCCcEEeecCCCCCCCCc
Q 017542 121 ASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSS-IVDLNKLETLSLFECRGLVLPP 199 (369)
Q Consensus 121 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~ 199 (369)
|......+..+..+++|++|++++|......+..+..+++|++|++++|.+..++.. +..+++|++|++++|....++.
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 876655556778999999999999776665566688999999999999999988754 7889999999999999877775
Q ss_pred -cccCCCCCcEEeccCCCCccCCCC-CCCCCCCCEEEccCCcCC
Q 017542 200 -LLSGLSSLKKLELGDCEIMEIPPD-IGCLSSLESLNLSGNNIE 241 (369)
Q Consensus 200 -~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~l~ 241 (369)
.+..+++|+.|++++|.+..++.. +..+++|++|++++|.+.
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 578899999999999999987654 678899999999999875
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=3.7e-22 Score=187.43 Aligned_cols=212 Identities=18% Similarity=0.161 Sum_probs=165.7
Q ss_pred CeeEEecCCccCcccC-ccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeecc
Q 017542 41 NVVELNLMCTPIEEVP-LSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLE 119 (369)
Q Consensus 41 ~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 119 (369)
+|++|++++|.++.++ ..+..+++|++|++++|...+..+ +..+++|++|++++|... .++ ..++|++|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~----~~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELL----VGPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEE----ECTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCC----CCCCcCEEECc
Confidence 7899999999888765 468888999999999877654443 788899999999987543 223 33889999999
Q ss_pred ccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCC-Ccccc-cCCCCcEEeecCCCCCCC
Q 017542 120 EASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQA-PSSIV-DLNKLETLSLFECRGLVL 197 (369)
Q Consensus 120 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~l~-~~~~L~~L~l~~~~~~~~ 197 (369)
+|......+. .+++|+.|++++|...+..+..++.+++|+.|++++|.+... |..+. .+++|+.|++++|....+
T Consensus 108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 7765554332 467899999988776666666778888899999999888753 44554 678899999998887666
Q ss_pred CccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccchhhccCCcCcEecccCCcc
Q 017542 198 PPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVK 263 (369)
Q Consensus 198 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~ 263 (369)
+. ...+++|+.|++++|.+.+++..+..+++|+.|++++|.++.+|..+..+++|+.|++++|+.
T Consensus 185 ~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 185 KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCB
T ss_pred cc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCC
Confidence 54 345788999999999888877777788889999999998888888888888899999988853
No 71
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.86 E-value=1.6e-24 Score=202.75 Aligned_cols=264 Identities=20% Similarity=0.195 Sum_probs=139.7
Q ss_pred CCCCccEEecCCCCCccc-----cCCccC----CeeEEecCCccCc-----ccCccCCCCCCCCEEeCcCCccccccccc
Q 017542 17 HFISSIKIDCYKCVNLRE-----FPRISG----NVVELNLMCTPIE-----EVPLSIECLPNLETLEMSFCNSLKRLSTS 82 (369)
Q Consensus 17 ~~~~L~~L~l~~~~~l~~-----~~~~~~----~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 82 (369)
.+++|++|++++|. +.+ +...+. +|++|++++|.++ .++..+..+++|++|++++|......+..
T Consensus 54 ~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 132 (461)
T 1z7x_W 54 VNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQL 132 (461)
T ss_dssp TCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHH
T ss_pred hCCCcCEEeCCCCc-CChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHH
Confidence 45666666666665 322 111122 4666666666655 23445566666666666665543322221
Q ss_pred c-----cCCCCCcEEecCCCcCCcc----CchhhhccCccceeeccccccccccchhhh-----cCCCCCeEeecCCCCC
Q 017542 83 I-----CKLKSLRSLDLSYCINLES----FPEILEKMELLEEINLEEASNIKELPSSIE-----NLEGLKQLKLTGCTKL 148 (369)
Q Consensus 83 ~-----~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~ 148 (369)
+ ...++|++|++++|..... ++..+..+++|++|++++|......+..+. ..++|++|++++|...
T Consensus 133 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 212 (461)
T 1z7x_W 133 LCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVT 212 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCB
T ss_pred HHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCc
Confidence 1 1234566666666644432 234455566666666666553332222221 2446667776665433
Q ss_pred CC----CCcccCCCcchhhhccCcccCCCC------CcccccCCCCcEEeecCCCCCC-----CCccccCCCCCcEEecc
Q 017542 149 GS----LPESLGNLKSLERLHAGLLAIPQA------PSSIVDLNKLETLSLFECRGLV-----LPPLLSGLSSLKKLELG 213 (369)
Q Consensus 149 ~~----~~~~~~~l~~L~~L~l~~~~~~~~------~~~l~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~ 213 (369)
.. ++..+..+++|++|++++|.+... +..+..+++|++|++++|.... ++..+..+++|++|+++
T Consensus 213 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls 292 (461)
T 1z7x_W 213 SDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLA 292 (461)
T ss_dssp TTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECT
T ss_pred HHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECC
Confidence 21 233445566667777766665421 1111235667777777766443 44455556677777777
Q ss_pred CCCCcc-----CCCCC-CCCCCCCEEEccCCcCCc-----cchhhccCCcCcEecccCCcccccCC-----C----CCcc
Q 017542 214 DCEIME-----IPPDI-GCLSSLESLNLSGNNIES-----LPTSISQLSRLRWLYLVNCVKLQSLP-----E----LPLL 273 (369)
Q Consensus 214 ~~~~~~-----~~~~~-~~~~~L~~L~l~~~~l~~-----~~~~~~~~~~L~~L~l~~~~~l~~~~-----~----~~~~ 273 (369)
+|.+.+ +...+ ...++|++|++++|.++. ++..+..+++|++|++++| .+++.+ . ..++
T Consensus 293 ~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~ 371 (461)
T 1z7x_W 293 GNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSV 371 (461)
T ss_dssp TCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCC
T ss_pred CCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCc
Confidence 776643 11111 123567777777776662 3445566677777777776 343321 0 1246
Q ss_pred cceeccccc
Q 017542 274 LVMLGASDC 282 (369)
Q Consensus 274 L~~L~l~~c 282 (369)
|++|++++|
T Consensus 372 L~~L~L~~n 380 (461)
T 1z7x_W 372 LRVLWLADC 380 (461)
T ss_dssp CCEEECTTS
T ss_pred eEEEECCCC
Confidence 666666665
No 72
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=2.8e-21 Score=164.62 Aligned_cols=203 Identities=19% Similarity=0.258 Sum_probs=109.7
Q ss_pred ccccCCccC-CeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCccccccc-ccccCCCCCcEEecCC-CcCCccCchhh
Q 017542 32 LREFPRISG-NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLS-TSICKLKSLRSLDLSY-CINLESFPEIL 107 (369)
Q Consensus 32 l~~~~~~~~-~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~-~~~~~~~~~~~ 107 (369)
++.+|. ++ ++++|+++++.++.++. .+..+++|++|++++|...+.++ ..+.++++|++|++++ |......+..+
T Consensus 23 l~~ip~-~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 23 IQRIPS-LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp CSSCCC-CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred ccccCC-CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 566666 43 67777777777766655 46666777777777665333333 3456666666666665 43333333445
Q ss_pred hccCccceeeccccccccccchhhhcCCCCC---eEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCc-ccccCCC
Q 017542 108 EKMELLEEINLEEASNIKELPSSIENLEGLK---QLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPS-SIVDLNK 183 (369)
Q Consensus 108 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~---~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~l~~~~~ 183 (369)
..+++|++|++++|... .+|. +..+++|+ +|++++|. .+..++. .+..+++
T Consensus 102 ~~l~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~~L~l~~N~-----------------------~l~~i~~~~~~~l~~ 156 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLK-MFPD-LTKVYSTDIFFILEITDNP-----------------------YMTSIPVNAFQGLCN 156 (239)
T ss_dssp ECCTTCCEEEEEEECCC-SCCC-CTTCCBCCSEEEEEEESCT-----------------------TCCEECTTTTTTTBS
T ss_pred CCCCCCCEEeCCCCCCc-cccc-cccccccccccEEECCCCc-----------------------chhhcCcccccchhc
Confidence 55566666666544322 2332 33344443 44444431 3333322 2444555
Q ss_pred Cc-EEeecCCCCCCCCccccCCCCCcEEeccCCC-CccCC-CCCCCC-CCCCEEEccCCcCCccchhhccCCcCcEeccc
Q 017542 184 LE-TLSLFECRGLVLPPLLSGLSSLKKLELGDCE-IMEIP-PDIGCL-SSLESLNLSGNNIESLPTSISQLSRLRWLYLV 259 (369)
Q Consensus 184 L~-~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~-~~~~~~-~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~ 259 (369)
|+ .|++++|....+|......++|+.|++++|+ +..++ ..+..+ ++|++|++++|.++.+|.. .+++|+.|+++
T Consensus 157 L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~ 234 (239)
T 2xwt_C 157 ETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIAR 234 (239)
T ss_dssp SEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECT
T ss_pred ceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeecc
Confidence 55 5555555544444422222566666666663 55543 234555 6677777777766666543 56666666666
Q ss_pred CCc
Q 017542 260 NCV 262 (369)
Q Consensus 260 ~~~ 262 (369)
++.
T Consensus 235 ~~~ 237 (239)
T 2xwt_C 235 NTW 237 (239)
T ss_dssp TC-
T ss_pred Ccc
Confidence 553
No 73
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=2.5e-21 Score=171.54 Aligned_cols=219 Identities=16% Similarity=0.112 Sum_probs=162.9
Q ss_pred CeeEEecCCccCcc--cCc--cCCCCCCCCEEeCcCCcccccccccc--cCCCCCcEEecCCCcCCccCc----hhhhcc
Q 017542 41 NVVELNLMCTPIEE--VPL--SIECLPNLETLEMSFCNSLKRLSTSI--CKLKSLRSLDLSYCINLESFP----EILEKM 110 (369)
Q Consensus 41 ~L~~L~l~~~~~~~--l~~--~~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~----~~~~~l 110 (369)
.++.+.+....++. +.. .+..+++|++|++++|...+..|..+ ..+++|++|++++|......+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 56777776666541 111 12234679999999988777777766 788999999999887665433 334578
Q ss_pred CccceeeccccccccccchhhhcCCCCCeEeecCCCCCCC--C--CcccCCCcchhhhccCcccCCCCCcc----cccCC
Q 017542 111 ELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGS--L--PESLGNLKSLERLHAGLLAIPQAPSS----IVDLN 182 (369)
Q Consensus 111 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~--~~~~~~l~~L~~L~l~~~~~~~~~~~----l~~~~ 182 (369)
++|++|++++|......+..+..+++|++|++++|...+. + +..+..+++|++|++++|.++.++.. +..++
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~ 224 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV 224 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence 8999999998877666667788889999999998765432 1 22246788899999999988755442 46678
Q ss_pred CCcEEeecCCCCCCC-CccccCC---CCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccchhhccCCcCcEecc
Q 017542 183 KLETLSLFECRGLVL-PPLLSGL---SSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYL 258 (369)
Q Consensus 183 ~L~~L~l~~~~~~~~-~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l 258 (369)
+|++|++++|..... |..+..+ ++|++|++++|.+..+|..+. ++|++|++++|.++.+|. +..+++|++|++
T Consensus 225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L 301 (310)
T 4glp_A 225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTL 301 (310)
T ss_dssp CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEEC
T ss_pred CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEEC
Confidence 999999999986655 5555555 689999999999988877653 789999999999888764 677889999999
Q ss_pred cCCc
Q 017542 259 VNCV 262 (369)
Q Consensus 259 ~~~~ 262 (369)
++|+
T Consensus 302 ~~N~ 305 (310)
T 4glp_A 302 DGNP 305 (310)
T ss_dssp SSTT
T ss_pred cCCC
Confidence 8884
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.86 E-value=2.5e-20 Score=163.26 Aligned_cols=193 Identities=22% Similarity=0.269 Sum_probs=103.1
Q ss_pred CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccc
Q 017542 41 NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEE 120 (369)
Q Consensus 41 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 120 (369)
++++++++++.++.+|..+. +++++|++++|......+..+..+++|++|++++|.... ++.. ..
T Consensus 11 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~----------- 75 (290)
T 1p9a_G 11 SHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-GT----------- 75 (290)
T ss_dssp TCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-SC-----------
T ss_pred CccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-CC-----------
Confidence 44555555555555554332 455555555544433333444555555555555543222 2211 34
Q ss_pred cccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCC-cccccCCCCcEEeecCCCCCCCCc
Q 017542 121 ASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAP-SSIVDLNKLETLSLFECRGLVLPP 199 (369)
Q Consensus 121 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~ 199 (369)
+++|++|++++|. +..+|..+..+++|++|++++|.+..++ ..+..+++|++|++++|....++.
T Consensus 76 -------------l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~ 141 (290)
T 1p9a_G 76 -------------LPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141 (290)
T ss_dssp -------------CTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT
T ss_pred -------------CCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccCh
Confidence 4445555555432 3344444455555555555555555544 345556666666666666554443
Q ss_pred -cccCCCCCcEEeccCCCCccCCCC-CCCCCCCCEEEccCCcCCccchhhccCCcCcEecccCCc
Q 017542 200 -LLSGLSSLKKLELGDCEIMEIPPD-IGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCV 262 (369)
Q Consensus 200 -~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~ 262 (369)
.+..+++|+.|++++|++..++.. +..+++|++|++++|.++.+|..+...++|+.+++++|+
T Consensus 142 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 142 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred hhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 345566666666666666665543 345666666666666666666666666666666666664
No 75
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=3.1e-21 Score=164.33 Aligned_cols=187 Identities=16% Similarity=0.202 Sum_probs=127.4
Q ss_pred CcCCccCCCCCCCCCccEEecCCCCCccccCC-ccC---CeeEEecCCcc-CcccCc-cCCCCCCCCEEeCcCCcccccc
Q 017542 6 CESLRCFPQNIHFISSIKIDCYKCVNLREFPR-ISG---NVVELNLMCTP-IEEVPL-SIECLPNLETLEMSFCNSLKRL 79 (369)
Q Consensus 6 c~~l~~~p~~~~~~~L~~L~l~~~~~l~~~~~-~~~---~L~~L~l~~~~-~~~l~~-~~~~~~~L~~L~l~~~~~~~~~ 79 (369)
|.+++++|. + .+++++|++++|. +..++. .+. +|++|++++|. ++.++. .+..+++|++|++++|+..+.+
T Consensus 20 c~~l~~ip~-~-~~~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i 96 (239)
T 2xwt_C 20 CKDIQRIPS-L-PPSTQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI 96 (239)
T ss_dssp ECSCSSCCC-C-CTTCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE
T ss_pred ccCccccCC-C-CCcccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc
Confidence 667888998 3 4589999999998 777775 343 99999999997 888876 6789999999999984444444
Q ss_pred c-ccccCCCCCcEEecCCCcCCccCchhhhccCccc---eeeccccccccccc-hhhhcCCCCC-eEeecCCCCCCCCCc
Q 017542 80 S-TSICKLKSLRSLDLSYCINLESFPEILEKMELLE---EINLEEASNIKELP-SSIENLEGLK-QLKLTGCTKLGSLPE 153 (369)
Q Consensus 80 ~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~---~L~l~~~~~~~~~~-~~~~~l~~L~-~L~l~~~~~~~~~~~ 153 (369)
+ ..+..+++|++|++++|... .+|. +..+++|+ +|++++|..+..++ ..+..+++|+ +|++++|... .++.
T Consensus 97 ~~~~f~~l~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~ 173 (239)
T 2xwt_C 97 DPDALKELPLLKFLGIFNTGLK-MFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQG 173 (239)
T ss_dssp CTTSEECCTTCCEEEEEEECCC-SCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECT
T ss_pred CHHHhCCCCCCCEEeCCCCCCc-cccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCH
Confidence 4 57888999999999997654 4665 78888888 99999883444443 4577788888 8888775433 4443
Q ss_pred ccCCCcchhhhccCccc-CCCCC-cccccC-CCCcEEeecCCCCCCCC
Q 017542 154 SLGNLKSLERLHAGLLA-IPQAP-SSIVDL-NKLETLSLFECRGLVLP 198 (369)
Q Consensus 154 ~~~~l~~L~~L~l~~~~-~~~~~-~~l~~~-~~L~~L~l~~~~~~~~~ 198 (369)
.....++|++|++++|. +..++ ..+..+ ++|+.|++++|....+|
T Consensus 174 ~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~ 221 (239)
T 2xwt_C 174 YAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALP 221 (239)
T ss_dssp TTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCC
T ss_pred hhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCC
Confidence 22222455555555552 44332 223333 44444444444433333
No 76
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.85 E-value=9.8e-23 Score=190.67 Aligned_cols=244 Identities=21% Similarity=0.224 Sum_probs=118.9
Q ss_pred CCCCccEEecCCCCCcc-----ccCCcc---CCeeEEecCCccCcc--cCccCCCCC----CCCEEeCcCCcccc----c
Q 017542 17 HFISSIKIDCYKCVNLR-----EFPRIS---GNVVELNLMCTPIEE--VPLSIECLP----NLETLEMSFCNSLK----R 78 (369)
Q Consensus 17 ~~~~L~~L~l~~~~~l~-----~~~~~~---~~L~~L~l~~~~~~~--l~~~~~~~~----~L~~L~l~~~~~~~----~ 78 (369)
.+++|++|++++|. +. .++..+ .+|++|+++++.++. +......++ +|++|++++|.... .
T Consensus 26 ~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~ 104 (461)
T 1z7x_W 26 LLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV 104 (461)
T ss_dssp HHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHH
Confidence 45566666666665 33 122222 256666666665542 111111222 46666666655432 3
Q ss_pred ccccccCCCCCcEEecCCCcCCccCchhhh-----ccCccceeeccccccccc----cchhhhcCCCCCeEeecCCCCCC
Q 017542 79 LSTSICKLKSLRSLDLSYCINLESFPEILE-----KMELLEEINLEEASNIKE----LPSSIENLEGLKQLKLTGCTKLG 149 (369)
Q Consensus 79 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~ 149 (369)
++..+..+++|++|++++|......+..+. ..++|++|++++|..... ++..+..+++|++|++++|....
T Consensus 105 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 184 (461)
T 1z7x_W 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 184 (461)
T ss_dssp HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcch
Confidence 344555566666666666543322222111 234566666665544332 23344455666666666654221
Q ss_pred CCCcccC-----CCcchhhhccCcccCCC-----CCcccccCCCCcEEeecCCCCCCC------CccccCCCCCcEEecc
Q 017542 150 SLPESLG-----NLKSLERLHAGLLAIPQ-----APSSIVDLNKLETLSLFECRGLVL------PPLLSGLSSLKKLELG 213 (369)
Q Consensus 150 ~~~~~~~-----~l~~L~~L~l~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~~~~------~~~~~~~~~L~~L~l~ 213 (369)
.....+. ..++|++|++++|.+.. ++..+..+++|++|++++|..... +.....+++|++|+++
T Consensus 185 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~ 264 (461)
T 1z7x_W 185 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIW 264 (461)
T ss_dssp HHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECc
Confidence 1111111 23356666666666553 234445556666666666653321 1122245566666666
Q ss_pred CCCCcc-----CCCCCCCCCCCCEEEccCCcCCccc-hhhc-----cCCcCcEecccCC
Q 017542 214 DCEIME-----IPPDIGCLSSLESLNLSGNNIESLP-TSIS-----QLSRLRWLYLVNC 261 (369)
Q Consensus 214 ~~~~~~-----~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~-----~~~~L~~L~l~~~ 261 (369)
+|.+.. ++..+..+++|++|++++|.+++.. ..+. ..++|++|++++|
T Consensus 265 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 323 (461)
T 1z7x_W 265 ECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 323 (461)
T ss_dssp TSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred CCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC
Confidence 666555 3333444566666666666654211 1111 1246666666666
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.85 E-value=4.2e-20 Score=161.77 Aligned_cols=197 Identities=23% Similarity=0.247 Sum_probs=142.1
Q ss_pred CCCCccEEecCCCCCccccCCccC-CeeEEecCCccCcccC-ccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEec
Q 017542 17 HFISSIKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVP-LSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDL 94 (369)
Q Consensus 17 ~~~~L~~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 94 (369)
.+++++.++++++. +..+|..++ +++.|++++|.++.++ ..+..+++|++|++++|... .++. ...+++|++|++
T Consensus 8 ~l~~l~~l~~~~~~-l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~l~~L~~L~L 84 (290)
T 1p9a_G 8 KVASHLEVNCDKRN-LTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDL 84 (290)
T ss_dssp CSTTCCEEECTTSC-CSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC-CSCCTTCCEEEC
T ss_pred ccCCccEEECCCCC-CCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccC-CCCCCcCCEEEC
Confidence 67889999999988 899987666 9999999999998764 56899999999999997654 4444 377999999999
Q ss_pred CCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCC
Q 017542 95 SYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQA 174 (369)
Q Consensus 95 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 174 (369)
++|.. ..+|..+..+++|++|++++|......+..+..+++|++|++++|. +..+
T Consensus 85 s~N~l-~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~------------------------l~~~ 139 (290)
T 1p9a_G 85 SHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE------------------------LKTL 139 (290)
T ss_dssp CSSCC-SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC------------------------CCCC
T ss_pred CCCcC-CcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC------------------------CCcc
Confidence 99754 4667777778888888888665544444456666666666666643 3333
Q ss_pred Cc-ccccCCCCcEEeecCCCCCCCCc-cccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCC
Q 017542 175 PS-SIVDLNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIE 241 (369)
Q Consensus 175 ~~-~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 241 (369)
+. .+..+++|+.|++++|....+|. .+..+++|+.|++++|.+..+|..+...++|+++++++|.+.
T Consensus 140 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred ChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 22 23445666666666666555554 345667777777777777777777766777888888877654
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.84 E-value=2.4e-20 Score=162.04 Aligned_cols=202 Identities=19% Similarity=0.170 Sum_probs=118.2
Q ss_pred CCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeE
Q 017542 61 CLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQL 140 (369)
Q Consensus 61 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 140 (369)
.+++|+.|++++|.. ..++ .+..+++|++|++++|.... + ..+..+++|++|++++|......+..+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i-~~~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 39 ELNSIDQIIANNSDI-KSVQ-GIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHTTCCEEECTTSCC-CCCT-TGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccceeeeeeCCCCc-cccc-ccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 345555555555432 2222 24445555555555543322 2 244555555555555554333333344555666666
Q ss_pred eecCCCCCCCCCcccCCCcchhhhccCcccCCCCCc-ccccCCCCcEEeecCCCCCCCCc-cccCCCCCcEEeccCCCCc
Q 017542 141 KLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPS-SIVDLNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIM 218 (369)
Q Consensus 141 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~ 218 (369)
++++|......+..+..+++|++|++++|.+..++. .+..+++|+.|++++|....++. .+..+++|+.|++++|.+.
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 666654433333345566666666666666665543 34567777777777777655554 4567778888888888887
Q ss_pred cCCCC-CCCCCCCCEEEccCCcCCccchhhccCCcCcEecccCCcccccCCCCCc
Q 017542 219 EIPPD-IGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPELPL 272 (369)
Q Consensus 219 ~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 272 (369)
+++.. +..+++|++|++++|.+. +.+++|+.++++.|..-..+|....
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBBCTTS
T ss_pred ccCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcccCccc
Confidence 75443 567788888888888654 3466788888777754445554433
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.84 E-value=1.5e-20 Score=163.24 Aligned_cols=225 Identities=19% Similarity=0.167 Sum_probs=172.9
Q ss_pred CCCccEEecCCCCCccccCC--ccCCeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecC
Q 017542 18 FISSIKIDCYKCVNLREFPR--ISGNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLS 95 (369)
Q Consensus 18 ~~~L~~L~l~~~~~l~~~~~--~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 95 (369)
+..+..+++.++. +.++.. .+.+|+.|+++++.++.++. +..+++|++|++++|.... ++ .+..+++|++|+++
T Consensus 18 ~~~l~~l~l~~~~-~~~~~~~~~l~~L~~L~l~~~~i~~~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 18 FAETIKANLKKKS-VTDAVTQNELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHD-IS-ALKELTNLTYLILT 93 (272)
T ss_dssp HHHHHHHHHTCSC-TTSEECHHHHTTCCEEECTTSCCCCCTT-GGGCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECT
T ss_pred HHHHHHHHhcCcc-cccccccccccceeeeeeCCCCcccccc-cccCCCCcEEECCCCCCCC-ch-hhcCCCCCCEEECC
Confidence 3445556666655 333332 23388999998888887764 7788999999999976543 33 57888999999999
Q ss_pred CCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCC
Q 017542 96 YCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAP 175 (369)
Q Consensus 96 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 175 (369)
+|......+..+..+++|++|++++|......+..+..+++|++|++++|......+..+..+++|++|++++|.+..++
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 173 (272)
T 3rfs_A 94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP 173 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC
Confidence 98766666666788999999999988766555566788999999999997655444455688999999999999988776
Q ss_pred cc-cccCCCCcEEeecCCCCCCCCc-cccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCC-ccchhhccCCc
Q 017542 176 SS-IVDLNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIE-SLPTSISQLSR 252 (369)
Q Consensus 176 ~~-l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~ 252 (369)
.. +..+++|+.|++++|....++. .+..+++|+.|++++|.+. ..+++|+.++++.|.++ .+|..++.++.
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred HHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 54 5788999999999999776664 5788999999999999755 34678999999999887 77777665544
No 80
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=2.5e-22 Score=183.55 Aligned_cols=222 Identities=21% Similarity=0.194 Sum_probs=146.5
Q ss_pred CeeEEecCCccCcc-----cCccCCCCCCCCEEeCcCCcc---ccccccc-------ccCCCCCcEEecCCCcCCc----
Q 017542 41 NVVELNLMCTPIEE-----VPLSIECLPNLETLEMSFCNS---LKRLSTS-------ICKLKSLRSLDLSYCINLE---- 101 (369)
Q Consensus 41 ~L~~L~l~~~~~~~-----l~~~~~~~~~L~~L~l~~~~~---~~~~~~~-------~~~~~~L~~L~l~~~~~~~---- 101 (369)
+|++|+++++.++. +...+..+++|++|++++|.. ...+|.. +..+++|++|++++|....
T Consensus 33 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 112 (386)
T 2ca6_A 33 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQE 112 (386)
T ss_dssp CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHH
T ss_pred CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHH
Confidence 67777777776652 333466777788888777532 1233332 3567788888888776554
Q ss_pred cCchhhhccCccceeeccccccccc----cchhhhcC---------CCCCeEeecCCCCC-CCCC---cccCCCcchhhh
Q 017542 102 SFPEILEKMELLEEINLEEASNIKE----LPSSIENL---------EGLKQLKLTGCTKL-GSLP---ESLGNLKSLERL 164 (369)
Q Consensus 102 ~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l---------~~L~~L~l~~~~~~-~~~~---~~~~~l~~L~~L 164 (369)
.++..+..+++|++|++++|..... ++..+..+ ++|++|++++|... ..++ ..+..+++|++|
T Consensus 113 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 192 (386)
T 2ca6_A 113 PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV 192 (386)
T ss_dssp HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEE
Confidence 3556677778888888877665432 22233333 77888888776543 2222 234566677777
Q ss_pred ccCcccCC------CCCcccccCCCCcEEeecCCCC-----CCCCccccCCCCCcEEeccCCCCccC-----CCCC--CC
Q 017542 165 HAGLLAIP------QAPSSIVDLNKLETLSLFECRG-----LVLPPLLSGLSSLKKLELGDCEIMEI-----PPDI--GC 226 (369)
Q Consensus 165 ~l~~~~~~------~~~~~l~~~~~L~~L~l~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~-----~~~~--~~ 226 (369)
++++|.+. -.+..+..+++|+.|++++|.. ..++..+..+++|+.|++++|.+... +..+ ..
T Consensus 193 ~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~ 272 (386)
T 2ca6_A 193 KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLE 272 (386)
T ss_dssp ECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCS
T ss_pred ECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhcc
Confidence 77777766 1223666778888888888875 44566677788888888888887652 3333 33
Q ss_pred CCCCCEEEccCCcCCc-----cchhh-ccCCcCcEecccCCc
Q 017542 227 LSSLESLNLSGNNIES-----LPTSI-SQLSRLRWLYLVNCV 262 (369)
Q Consensus 227 ~~~L~~L~l~~~~l~~-----~~~~~-~~~~~L~~L~l~~~~ 262 (369)
+++|++|++++|.++. ++..+ ..+++|++|++++|.
T Consensus 273 ~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 273 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp SCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred CCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 7788888888888876 77666 557888888888883
No 81
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=6.6e-20 Score=162.07 Aligned_cols=186 Identities=26% Similarity=0.342 Sum_probs=100.8
Q ss_pred CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccc
Q 017542 41 NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEE 120 (369)
Q Consensus 41 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 120 (369)
+|++|+++++.++.++ .+..+++|++|++++|... .++. +..+++|++|++++|... .++
T Consensus 42 ~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~-~~~~-~~~l~~L~~L~L~~n~l~-~~~---------------- 101 (308)
T 1h6u_A 42 GITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNPLK-NVS---------------- 101 (308)
T ss_dssp TCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCCSCCEEECCSCCCS-CCG----------------
T ss_pred CcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCC-CChh-HccCCCCCEEEccCCcCC-Cch----------------
Confidence 5555555555555444 2444555555555554322 2222 444555555555554322 222
Q ss_pred cccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCcc
Q 017542 121 ASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPL 200 (369)
Q Consensus 121 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 200 (369)
.+..+++|++|++++|.. ..++. +..+++|++|++++|.+..++. +..+++|+.|++++|....++.
T Consensus 102 ---------~~~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~- 168 (308)
T 1h6u_A 102 ---------AIAGLQSIKTLDLTSTQI-TDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP- 168 (308)
T ss_dssp ---------GGTTCTTCCEEECTTSCC-CCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-
T ss_pred ---------hhcCCCCCCEEECCCCCC-CCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-
Confidence 244444555555555332 22222 4555555555555555554433 5556666666666666555554
Q ss_pred ccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccchhhccCCcCcEecccCC
Q 017542 201 LSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNC 261 (369)
Q Consensus 201 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~ 261 (369)
+..+++|+.|++++|.+.+++. +..+++|++|++++|.++.++. +..+++|++|++++|
T Consensus 169 l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 169 LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQ 227 (308)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEE
T ss_pred hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCC
Confidence 5666667777777776666543 5566677777777777666653 566677777777766
No 82
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=5.8e-20 Score=162.42 Aligned_cols=191 Identities=20% Similarity=0.265 Sum_probs=132.0
Q ss_pred CCCCccEEecCCCCCccccCCcc--CCeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEec
Q 017542 17 HFISSIKIDCYKCVNLREFPRIS--GNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDL 94 (369)
Q Consensus 17 ~~~~L~~L~l~~~~~l~~~~~~~--~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 94 (369)
.+++|++|++++|. +..++... .+|++|++++|.++.++. +..+++|++|++++|... .++ .+..+++|++|++
T Consensus 39 ~l~~L~~L~l~~~~-i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 39 DLDGITTLSAFGTG-VTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHHTCCEEECTTSC-CCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEEEC
T ss_pred HcCCcCEEEeeCCC-ccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCC-Cch-hhcCCCCCCEEEC
Confidence 68899999999998 78887543 399999999999998887 899999999999998744 444 4888999999999
Q ss_pred CCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCC
Q 017542 95 SYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQA 174 (369)
Q Consensus 95 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 174 (369)
++|.... ++. +..+++|++|++++|.... ++. +..+++|++|++++|. +..++. +..+++|++|++++|.+..+
T Consensus 115 ~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~ 188 (308)
T 1h6u_A 115 TSTQITD-VTP-LAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQ-VSDLTP-LANLSKLTTLKADDNKISDI 188 (308)
T ss_dssp TTSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCCC
T ss_pred CCCCCCC-chh-hcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEccCCc-CCCChh-hcCCCCCCEEECCCCccCcC
Confidence 9986544 443 7888999999998775433 333 6677788888887754 333333 55555666666666655544
Q ss_pred CcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCcc
Q 017542 175 PSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIME 219 (369)
Q Consensus 175 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 219 (369)
+. +..+++|++|++++|....++. +..+++|+.|++++|.+..
T Consensus 189 ~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 189 SP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp GG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEEC
T ss_pred hh-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeec
Confidence 33 4445555555555555444432 4444555555555554443
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.83 E-value=1.4e-21 Score=175.08 Aligned_cols=219 Identities=15% Similarity=0.132 Sum_probs=137.7
Q ss_pred CccEEecCCCCCccccCCcc--CCeeEEecCCccCcccCccCCCCCCCCEEeCcCCccccc-ccccccCCCCCcEEecCC
Q 017542 20 SSIKIDCYKCVNLREFPRIS--GNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKR-LSTSICKLKSLRSLDLSY 96 (369)
Q Consensus 20 ~L~~L~l~~~~~l~~~~~~~--~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~ 96 (369)
.++.++++++.......... ..++.|+++++.+...+..+..+++|++|++++|..... ++..+..+++|++|++++
T Consensus 48 ~~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~ 127 (336)
T 2ast_B 48 LWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG 127 (336)
T ss_dssp TSSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred hheeeccccccCCHHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcC
Confidence 36677777765222111122 377788887777776555566778888888888765443 566667778888888888
Q ss_pred CcCCccCchhhhccCccceeecccccccc--ccchhhhcCCCCCeEeecCCCCCCC--CCcccCCCc-chhhhccCccc-
Q 017542 97 CINLESFPEILEKMELLEEINLEEASNIK--ELPSSIENLEGLKQLKLTGCTKLGS--LPESLGNLK-SLERLHAGLLA- 170 (369)
Q Consensus 97 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~-~L~~L~l~~~~- 170 (369)
|......+..+..+++|++|++++|..++ .++..+..+++|++|++++|..++. ++..+..++ +|++|++++|.
T Consensus 128 ~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~ 207 (336)
T 2ast_B 128 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK 207 (336)
T ss_dssp CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG
T ss_pred cccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcc
Confidence 76555566677778888888888774444 3555667778888888887733332 344455666 77777777763
Q ss_pred -CC--CCCcccccCCCCcEEeecCCC-C-CCCCccccCCCCCcEEeccCCC-Ccc-CCCCCCCCCCCCEEEccCC
Q 017542 171 -IP--QAPSSIVDLNKLETLSLFECR-G-LVLPPLLSGLSSLKKLELGDCE-IME-IPPDIGCLSSLESLNLSGN 238 (369)
Q Consensus 171 -~~--~~~~~l~~~~~L~~L~l~~~~-~-~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~~L~~L~l~~~ 238 (369)
++ .++..+..+++|++|++++|. . ...+..+..+++|+.|++++|. +.. ....+..+++|++|++++|
T Consensus 208 ~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 208 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred cCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 32 334455566777777777766 2 2334455666777777777664 211 1123455667777777766
No 84
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=8e-20 Score=164.58 Aligned_cols=236 Identities=18% Similarity=0.197 Sum_probs=176.2
Q ss_pred cEEecCCCCCccccCCccC-CeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCcccccccc-cccCCCCCcEEec-CCC
Q 017542 22 IKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLST-SICKLKSLRSLDL-SYC 97 (369)
Q Consensus 22 ~~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l-~~~ 97 (369)
+.++.+++. +.++|..++ ++++|++++|.++.+|. .|.++++|++|+|++|...+.++. .|.++++++++.. +.|
T Consensus 12 ~~v~C~~~~-Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 12 RVFLCQESK-VTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp TEEEEESTT-CCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred CEEEecCCC-CCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 567888777 899997665 99999999999999986 588999999999999887776664 5778888887554 444
Q ss_pred cCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCc-ccCCC-cchhhhccCcccCCCCC
Q 017542 98 INLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPE-SLGNL-KSLERLHAGLLAIPQAP 175 (369)
Q Consensus 98 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l-~~L~~L~l~~~~~~~~~ 175 (369)
......+..+..+++|++|++++|......+..+....++..+++.++..+..++. .+..+ ..++.|++++|.+..++
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~ 170 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH 170 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC
T ss_pred cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCC
Confidence 44444567889999999999998776554445556667888888887766665553 34444 35778888888888777
Q ss_pred cccccCCCCcEEeecC-CCCCCCCc-cccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCC-cCCccchhhccCCc
Q 017542 176 SSIVDLNKLETLSLFE-CRGLVLPP-LLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGN-NIESLPTSISQLSR 252 (369)
Q Consensus 176 ~~l~~~~~L~~L~l~~-~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~~ 252 (369)
.......+|+++.+.+ |....+|. .+..+++|+.|++++|++..+|.. .+.+|+.|.+.++ .++.+| .+..+++
T Consensus 171 ~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP-~l~~l~~ 247 (350)
T 4ay9_X 171 NSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLP-TLEKLVA 247 (350)
T ss_dssp TTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCC-CTTTCCS
T ss_pred hhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCC-CchhCcC
Confidence 7666667788888875 44667764 567788888888888888877653 3557777776664 566777 3677788
Q ss_pred CcEecccCC
Q 017542 253 LRWLYLVNC 261 (369)
Q Consensus 253 L~~L~l~~~ 261 (369)
|+.+++.++
T Consensus 248 L~~l~l~~~ 256 (350)
T 4ay9_X 248 LMEASLTYP 256 (350)
T ss_dssp CCEEECSCH
T ss_pred hhhCcCCCC
Confidence 888877643
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.83 E-value=1.9e-20 Score=165.88 Aligned_cols=221 Identities=15% Similarity=0.116 Sum_probs=173.4
Q ss_pred CCCCccEEecCCCCCccc-----cCCcc--CCeeEEecCCccCc-ccCccC--CCCCCCCEEeCcCCccccccc----cc
Q 017542 17 HFISSIKIDCYKCVNLRE-----FPRIS--GNVVELNLMCTPIE-EVPLSI--ECLPNLETLEMSFCNSLKRLS----TS 82 (369)
Q Consensus 17 ~~~~L~~L~l~~~~~l~~-----~~~~~--~~L~~L~l~~~~~~-~l~~~~--~~~~~L~~L~l~~~~~~~~~~----~~ 82 (369)
....++.+.+.++. +.. +.... .+|++|+++++.+. ..|..+ ..+++|++|++++|......+ ..
T Consensus 62 ~~~~l~~l~l~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~ 140 (310)
T 4glp_A 62 KALRVRRLTVGAAQ-VPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQ 140 (310)
T ss_dssp SSCCCCEEEECSCC-CBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHH
T ss_pred hhcceeEEEEeCCc-CCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHH
Confidence 33457788888776 322 11221 27999999999987 455555 889999999999988765433 23
Q ss_pred ccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccccccc--cc--hhhhcCCCCCeEeecCCCCCCCCCc----c
Q 017542 83 ICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKE--LP--SSIENLEGLKQLKLTGCTKLGSLPE----S 154 (369)
Q Consensus 83 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~--~~~~~l~~L~~L~l~~~~~~~~~~~----~ 154 (369)
+..+++|++|++++|......+..++.+++|++|++++|+..+. ++ ..+..+++|++|++++|.. +.++. .
T Consensus 141 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l 219 (310)
T 4glp_A 141 QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAAL 219 (310)
T ss_dssp TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHHH
T ss_pred hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHHH
Confidence 45689999999999988777778899999999999998876542 22 2346889999999999754 43333 2
Q ss_pred cCCCcchhhhccCcccCCCC-CcccccC---CCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCC
Q 017542 155 LGNLKSLERLHAGLLAIPQA-PSSIVDL---NKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSL 230 (369)
Q Consensus 155 ~~~l~~L~~L~l~~~~~~~~-~~~l~~~---~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L 230 (369)
+..+++|++|++++|.+... |..+..+ ++|++|++++|....+|..+. ++|+.|++++|.+.+++. +..+++|
T Consensus 220 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L 296 (310)
T 4glp_A 220 AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEV 296 (310)
T ss_dssp HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCC
T ss_pred HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCc
Confidence 46779999999999999876 6666665 699999999999888887664 799999999999998765 6788999
Q ss_pred CEEEccCCcCCc
Q 017542 231 ESLNLSGNNIES 242 (369)
Q Consensus 231 ~~L~l~~~~l~~ 242 (369)
++|++++|.+++
T Consensus 297 ~~L~L~~N~l~~ 308 (310)
T 4glp_A 297 DNLTLDGNPFLV 308 (310)
T ss_dssp SCEECSSTTTSC
T ss_pred cEEECcCCCCCC
Confidence 999999998763
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.82 E-value=5.6e-22 Score=177.74 Aligned_cols=218 Identities=18% Similarity=0.215 Sum_probs=167.1
Q ss_pred CeeEEecCCccCcccCccCCCC--CCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCcc-CchhhhccCccceee
Q 017542 41 NVVELNLMCTPIEEVPLSIECL--PNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLES-FPEILEKMELLEEIN 117 (369)
Q Consensus 41 ~L~~L~l~~~~~~~l~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~ 117 (369)
.++.++++++.+. +..+..+ +++++|++++|...+..+. +..+++|++|++++|..... ++..+..+++|++|+
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 5788999887776 2334445 7899999999766555444 56789999999999875544 777888999999999
Q ss_pred ccccccccccchhhhcCCCCCeEeecCCCCCCC--CCcccCCCcchhhhccCcc-cCCC--CCcccccCC-CCcEEeecC
Q 017542 118 LEEASNIKELPSSIENLEGLKQLKLTGCTKLGS--LPESLGNLKSLERLHAGLL-AIPQ--APSSIVDLN-KLETLSLFE 191 (369)
Q Consensus 118 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~-~~~~--~~~~l~~~~-~L~~L~l~~ 191 (369)
+++|......+..+..+++|++|++++|..++. ++..+..+++|++|++++| .++. ++..+..++ +|++|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 998876666777888899999999999855542 4555677889999999998 7763 456677788 999999998
Q ss_pred CCC----CCCCccccCCCCCcEEeccCCC-Ccc-CCCCCCCCCCCCEEEccCCc-CC-ccchhhccCCcCcEecccCC
Q 017542 192 CRG----LVLPPLLSGLSSLKKLELGDCE-IME-IPPDIGCLSSLESLNLSGNN-IE-SLPTSISQLSRLRWLYLVNC 261 (369)
Q Consensus 192 ~~~----~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~~L~~L~l~~~~-l~-~~~~~~~~~~~L~~L~l~~~ 261 (369)
|.. ..++..+..+++|+.|++++|. +.+ .+..+..+++|++|++++|. +. .....++.+++|++|++++|
T Consensus 205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 842 3455666778899999999998 443 45567778899999999984 33 11235677899999999988
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.81 E-value=9.4e-22 Score=179.74 Aligned_cols=241 Identities=17% Similarity=0.122 Sum_probs=182.6
Q ss_pred eeEEecCCccCcccCccCCCCCCCCEEeCcCCccccc----ccccccCCCCCcEEecCCCcCC---ccCchh-------h
Q 017542 42 VVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKR----LSTSICKLKSLRSLDLSYCINL---ESFPEI-------L 107 (369)
Q Consensus 42 L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~---~~~~~~-------~ 107 (369)
|+...++...+..+...+..+++|++|++++|..... ++..+..+++|++|++++|... ..+|.. +
T Consensus 11 L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l 90 (386)
T 2ca6_A 11 LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQAL 90 (386)
T ss_dssp CEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHH
Confidence 3344445555556777778889999999999876654 3344678999999999997332 234443 3
Q ss_pred hccCccceeecccccccc----ccchhhhcCCCCCeEeecCCCCCCC----CCcccCCC---------cchhhhccCccc
Q 017542 108 EKMELLEEINLEEASNIK----ELPSSIENLEGLKQLKLTGCTKLGS----LPESLGNL---------KSLERLHAGLLA 170 (369)
Q Consensus 108 ~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l---------~~L~~L~l~~~~ 170 (369)
..+++|++|++++|.... .++..+..+++|++|++++|..... ++..+..+ ++|++|++++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 689999999999887665 3677888999999999999865322 22223334 899999999999
Q ss_pred CC--CCC---cccccCCCCcEEeecCCCCC------CCCccccCCCCCcEEeccCCCCc-----cCCCCCCCCCCCCEEE
Q 017542 171 IP--QAP---SSIVDLNKLETLSLFECRGL------VLPPLLSGLSSLKKLELGDCEIM-----EIPPDIGCLSSLESLN 234 (369)
Q Consensus 171 ~~--~~~---~~l~~~~~L~~L~l~~~~~~------~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~ 234 (369)
+. .++ ..+..+++|++|++++|... ..+..+..+++|+.|++++|.+. .++..+..+++|++|+
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence 86 333 35667899999999999865 23336788999999999999994 3666678889999999
Q ss_pred ccCCcCCc-----cchhhc--cCCcCcEecccCCccccc-----CCCC----Ccccceecccccc
Q 017542 235 LSGNNIES-----LPTSIS--QLSRLRWLYLVNCVKLQS-----LPEL----PLLLVMLGASDCK 283 (369)
Q Consensus 235 l~~~~l~~-----~~~~~~--~~~~L~~L~l~~~~~l~~-----~~~~----~~~L~~L~l~~c~ 283 (369)
+++|.++. ++..+. .+++|++|++++| .++. ++.. .++|++|++.+|+
T Consensus 251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 99999984 456663 4899999999999 4554 5542 4789999998875
No 88
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.81 E-value=3.4e-21 Score=174.36 Aligned_cols=239 Identities=13% Similarity=0.072 Sum_probs=137.1
Q ss_pred EecCCCCCccccCCccC---CeeEEecCCccCcccC-----ccCCCCC-CCCEEeCcCCcccccccccccCC-----CCC
Q 017542 24 IDCYKCVNLREFPRISG---NVVELNLMCTPIEEVP-----LSIECLP-NLETLEMSFCNSLKRLSTSICKL-----KSL 89 (369)
Q Consensus 24 L~l~~~~~l~~~~~~~~---~L~~L~l~~~~~~~l~-----~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~-----~~L 89 (369)
.+++.+.....+|++.. +|++|++++|.++..+ ..+..++ +|++|++++|......+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 45666653334454433 5777777777776554 3455666 77777777776555444444443 777
Q ss_pred cEEecCCCcCCccCchh----hhcc-Cccceeeccccccccccchhh----hc-CCCCCeEeecCCCCCCCC----Cccc
Q 017542 90 RSLDLSYCINLESFPEI----LEKM-ELLEEINLEEASNIKELPSSI----EN-LEGLKQLKLTGCTKLGSL----PESL 155 (369)
Q Consensus 90 ~~L~l~~~~~~~~~~~~----~~~l-~~L~~L~l~~~~~~~~~~~~~----~~-l~~L~~L~l~~~~~~~~~----~~~~ 155 (369)
++|++++|......+.. +..+ ++|++|++++|......+..+ .. .++|++|++++|...... +..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 77777777655444443 3333 677777777766544333332 23 357777777776543221 2223
Q ss_pred CCCc-chhhhccCcccCCCCCc-----ccccC-CCCcEEeecCCCCCC-----CCccccC-CCCCcEEeccCCCCccCC-
Q 017542 156 GNLK-SLERLHAGLLAIPQAPS-----SIVDL-NKLETLSLFECRGLV-----LPPLLSG-LSSLKKLELGDCEIMEIP- 221 (369)
Q Consensus 156 ~~l~-~L~~L~l~~~~~~~~~~-----~l~~~-~~L~~L~l~~~~~~~-----~~~~~~~-~~~L~~L~l~~~~~~~~~- 221 (369)
...+ +|++|++++|.+..... .+..+ ++|++|++++|.... ++..+.. .++|++|++++|.+.+.+
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 3333 67777777776654321 23333 477777777777444 3333333 346777777777766532
Q ss_pred ----CCCCCCCCCCEEEccCCcCCc--------cchhhccCCcCcEecccCCc
Q 017542 222 ----PDIGCLSSLESLNLSGNNIES--------LPTSISQLSRLRWLYLVNCV 262 (369)
Q Consensus 222 ----~~~~~~~~L~~L~l~~~~l~~--------~~~~~~~~~~L~~L~l~~~~ 262 (369)
..+..+++|++|++++|.+.. ++..+..+++|++|++++|.
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 224556677777777776332 22334556667777777763
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.80 E-value=1.5e-18 Score=148.80 Aligned_cols=63 Identities=25% Similarity=0.422 Sum_probs=38.6
Q ss_pred ccCCCCcEEeecCCCCCCCCc-cccCCCCCcEEeccCCCCccCCC-CCCCCCCCCEEEccCCcCC
Q 017542 179 VDLNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIMEIPP-DIGCLSSLESLNLSGNNIE 241 (369)
Q Consensus 179 ~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~l~ 241 (369)
..+++|+.|++++|....++. .+..+++|+.|++++|.+..++. .+..+++|++|++++|.++
T Consensus 128 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 128 DRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred ccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 445555566666555544443 45566666666666666666443 4556677777777777665
No 90
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.79 E-value=5.2e-22 Score=191.54 Aligned_cols=176 Identities=12% Similarity=0.032 Sum_probs=104.2
Q ss_pred CCCCccEEecCCCCCccccC----CccC-CeeEEecCCcc-Cc--ccCccCCCCCCCCEEeCcCCccccc----cccccc
Q 017542 17 HFISSIKIDCYKCVNLREFP----RISG-NVVELNLMCTP-IE--EVPLSIECLPNLETLEMSFCNSLKR----LSTSIC 84 (369)
Q Consensus 17 ~~~~L~~L~l~~~~~l~~~~----~~~~-~L~~L~l~~~~-~~--~l~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~ 84 (369)
.+++|++|++++|......+ ..++ +|++|+++++. ++ .++.....+++|++|++++|...+. ++....
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 46778888888875222222 2223 48888885544 32 2333345678888888888865433 333445
Q ss_pred CCCCCcEEecCCCcCC----ccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCC---CCCCcccCC
Q 017542 85 KLKSLRSLDLSYCINL----ESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKL---GSLPESLGN 157 (369)
Q Consensus 85 ~~~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~---~~~~~~~~~ 157 (369)
.+++|++|++++|... ..++..+..+++|++|++++|.. ..++..+..+++|++|+++.+... ......+..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI-LELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG-GGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH-HHHHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 6788888888887654 23455667788888888887653 345666777788888887643222 112223344
Q ss_pred CcchhhhccCcccCCCCCcccccCCCCcEEeecCCC
Q 017542 158 LKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECR 193 (369)
Q Consensus 158 l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~ 193 (369)
+++|+.+++.++....++..+..+++|++|++++|.
T Consensus 269 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL 304 (592)
T ss_dssp CTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC
T ss_pred cccccccCccccchhHHHHHHhhcCCCcEEecCCCc
Confidence 455555555444333444444445555555555554
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.79 E-value=2.5e-18 Score=147.36 Aligned_cols=175 Identities=17% Similarity=0.188 Sum_probs=98.6
Q ss_pred CccEEecCCCCCccccCCccC-CeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCC
Q 017542 20 SSIKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYC 97 (369)
Q Consensus 20 ~L~~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 97 (369)
..++++++++. +..+|..++ .+++|+++++.++.++. .+..+++|++|++++|......+..+..+++|++|++++|
T Consensus 15 ~~~~l~~~~~~-l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 15 GKKEVDCQGKS-LDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GGTEEECTTCC-CSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCeEEecCCCC-ccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 35566666665 666665444 66666666666665443 4556666666666665544444444555666666666665
Q ss_pred cCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCc-
Q 017542 98 INLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPS- 176 (369)
Q Consensus 98 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~- 176 (369)
......+..+..+++|++|++++|......+.. +..+++|++|++++|.+..++.
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~------------------------~~~l~~L~~L~Ls~N~l~~~~~~ 149 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGV------------------------FDRLTKLKELRLNTNQLQSIPAG 149 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT------------------------TTTCTTCCEEECCSSCCCCCCTT
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcChhH------------------------hccCCcccEEECcCCcCCccCHH
Confidence 544434444555555555555544333222223 3444555555555555554443
Q ss_pred ccccCCCCcEEeecCCCCCCCCc-cccCCCCCcEEeccCCCCcc
Q 017542 177 SIVDLNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIME 219 (369)
Q Consensus 177 ~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~ 219 (369)
.+..+++|++|++++|....++. .+..+++|+.|++++|++..
T Consensus 150 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 150 AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred HcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 35556666666666666555543 45666777777777776543
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.78 E-value=2.5e-18 Score=154.76 Aligned_cols=233 Identities=21% Similarity=0.199 Sum_probs=164.8
Q ss_pred eEEecCCccCcccCccCCCCCCCCEEeCcCCccccccc-ccccCCCCCcEEecCCCcCCccCc-hhhhccCccceeeccc
Q 017542 43 VELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLS-TSICKLKSLRSLDLSYCINLESFP-EILEKMELLEEINLEE 120 (369)
Q Consensus 43 ~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~ 120 (369)
++++.++++++++|..+ .+++++|++++|.. +.++ ..|.++++|++|++++|...+.++ ..+.++++++++...+
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i-~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKL-RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCC-SEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcC-CCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 45677788889998765 36899999999754 4555 468889999999999987766555 4678888888755544
Q ss_pred ccccc-ccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCc-ccCCCCCc-ccccC-CCCcEEeecCCCCCC
Q 017542 121 ASNIK-ELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGL-LAIPQAPS-SIVDL-NKLETLSLFECRGLV 196 (369)
Q Consensus 121 ~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~-~l~~~-~~L~~L~l~~~~~~~ 196 (369)
+..+. ..+.++..+++|++|++++|......+..+....++..+++.+ +.+..++. .+..+ ..++.|++++|....
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 44444 4466788899999999998665443333444555666777654 45555443 33443 468888999888888
Q ss_pred CCccccCCCCCcEEeccC-CCCccCCCC-CCCCCCCCEEEccCCcCCccchhhccCCcCcEecccCCcccccCCCC--Cc
Q 017542 197 LPPLLSGLSSLKKLELGD-CEIMEIPPD-IGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPEL--PL 272 (369)
Q Consensus 197 ~~~~~~~~~~L~~L~l~~-~~~~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~ 272 (369)
++.......+|+++.+.+ |.+..++.. +..+++|++|++++|+++.+|.. .+.+|++|.+.++..++.+|.. ++
T Consensus 169 i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~l~~l~ 246 (350)
T 4ay9_X 169 IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPTLEKLV 246 (350)
T ss_dssp ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCCTTTCC
T ss_pred CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCCchhCc
Confidence 877655667788888874 566667654 57788899999999988888753 4667788877777777777752 34
Q ss_pred ccceeccc
Q 017542 273 LLVMLGAS 280 (369)
Q Consensus 273 ~L~~L~l~ 280 (369)
+|+.+++.
T Consensus 247 ~L~~l~l~ 254 (350)
T 4ay9_X 247 ALMEASLT 254 (350)
T ss_dssp SCCEEECS
T ss_pred ChhhCcCC
Confidence 55555543
No 93
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.78 E-value=6.6e-22 Score=190.84 Aligned_cols=148 Identities=16% Similarity=0.073 Sum_probs=72.9
Q ss_pred ccEEecCCCCCccc--cC---CccCCeeEEecCCccCcc-----cCccCCCCCCCCEEeCcCCccc----ccccccccCC
Q 017542 21 SIKIDCYKCVNLRE--FP---RISGNVVELNLMCTPIEE-----VPLSIECLPNLETLEMSFCNSL----KRLSTSICKL 86 (369)
Q Consensus 21 L~~L~l~~~~~l~~--~~---~~~~~L~~L~l~~~~~~~-----l~~~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~ 86 (369)
|++|++++|..... ++ ...++|++|+++++.++. ++.....+++|++|++++|... ..++..+.++
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~ 219 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence 77777766652211 11 123467777776665542 2222345666777777665543 2333444556
Q ss_pred CCCcEEecCCCcCCccCchhhhccCccceeeccccccc---cccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhh
Q 017542 87 KSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNI---KELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLER 163 (369)
Q Consensus 87 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~---~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 163 (369)
++|+.|++++|... .++..+..+++|++|+++++... ......+..+++|+.+.++++ ....++..+..+++|++
T Consensus 220 ~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~ 297 (592)
T 3ogk_B 220 RSLVSVKVGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRK 297 (592)
T ss_dssp TTCCEEECSSCBGG-GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCE
T ss_pred CCCcEEeccCccHH-HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcE
Confidence 67777777665433 35555666666666666532221 112223334444555444442 22233333344444555
Q ss_pred hccCccc
Q 017542 164 LHAGLLA 170 (369)
Q Consensus 164 L~l~~~~ 170 (369)
|++++|.
T Consensus 298 L~Ls~~~ 304 (592)
T 3ogk_B 298 LDLLYAL 304 (592)
T ss_dssp EEETTCC
T ss_pred EecCCCc
Confidence 5544444
No 94
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.77 E-value=5.6e-20 Score=166.42 Aligned_cols=240 Identities=15% Similarity=0.079 Sum_probs=172.9
Q ss_pred EEecCCccCc-ccCccCCCCCCCCEEeCcCCccccccc----ccccCCC-CCcEEecCCCcCCccCchhhhcc-----Cc
Q 017542 44 ELNLMCTPIE-EVPLSIECLPNLETLEMSFCNSLKRLS----TSICKLK-SLRSLDLSYCINLESFPEILEKM-----EL 112 (369)
Q Consensus 44 ~L~l~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l-----~~ 112 (369)
.+.++.+.++ .+|..+...++|++|++++|......+ ..+..++ +|++|++++|......+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 4567888887 445545556679999999987655444 5677788 99999999997776666666664 99
Q ss_pred cceeeccccccccccchh----hhcC-CCCCeEeecCCCCCCCCCcc----cCC-CcchhhhccCcccCCCC-----Ccc
Q 017542 113 LEEINLEEASNIKELPSS----IENL-EGLKQLKLTGCTKLGSLPES----LGN-LKSLERLHAGLLAIPQA-----PSS 177 (369)
Q Consensus 113 L~~L~l~~~~~~~~~~~~----~~~l-~~L~~L~l~~~~~~~~~~~~----~~~-l~~L~~L~l~~~~~~~~-----~~~ 177 (369)
|++|++++|......+.. +..+ ++|++|++++|......+.. +.. .++|++|++++|.+... +..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999988866554443 4444 89999999997754433322 344 36899999999998732 333
Q ss_pred cccCC-CCcEEeecCCCCCCCCc-----cccCC-CCCcEEeccCCCCcc-----CCCCCCC-CCCCCEEEccCCcCCccc
Q 017542 178 IVDLN-KLETLSLFECRGLVLPP-----LLSGL-SSLKKLELGDCEIME-----IPPDIGC-LSSLESLNLSGNNIESLP 244 (369)
Q Consensus 178 l~~~~-~L~~L~l~~~~~~~~~~-----~~~~~-~~L~~L~l~~~~~~~-----~~~~~~~-~~~L~~L~l~~~~l~~~~ 244 (369)
+...+ +|++|++++|....... .+..+ ++|+.|++++|.+.+ ++..+.. .++|++|++++|.++..+
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 44555 99999999999654442 34455 599999999999887 3433444 469999999999998543
Q ss_pred -----hhhccCCcCcEecccCCc--c-----cccCCC---CCcccceecccccc
Q 017542 245 -----TSISQLSRLRWLYLVNCV--K-----LQSLPE---LPLLLVMLGASDCK 283 (369)
Q Consensus 245 -----~~~~~~~~L~~L~l~~~~--~-----l~~~~~---~~~~L~~L~l~~c~ 283 (369)
..+..+++|++|++++|. . +..++. ..++|+.|++++++
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 344778999999999994 1 222222 33567888887764
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.75 E-value=1.5e-17 Score=157.77 Aligned_cols=184 Identities=23% Similarity=0.233 Sum_probs=96.3
Q ss_pred CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccc
Q 017542 41 NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEE 120 (369)
Q Consensus 41 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 120 (369)
+++.|+++++.++.+|..+ +++|++|++++|... .+| ..+++|++|++++|.... +|. +.. +|++|++++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCC
Confidence 4555555555555555433 245555555554332 344 234555555555543332 443 322 555555554
Q ss_pred cccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCcc
Q 017542 121 ASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPL 200 (369)
Q Consensus 121 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 200 (369)
|.... +|. .+++|+.|++++|. ++.+|. .+++|++|++++|.++.+|. +. ++|+.|++++|....+|.
T Consensus 130 N~l~~-lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~- 197 (571)
T 3cvr_A 130 NQLTM-LPE---LPALLEYINADNNQ-LTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA- 197 (571)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-
T ss_pred CcCCC-CCC---cCccccEEeCCCCc-cCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-
Confidence 43322 333 34556666665543 223443 34556666666666655555 33 566666666666555555
Q ss_pred ccCCCCC-------cEEeccCCCCccCCCCCCCCCCCCEEEccCCcCC-ccchhhc
Q 017542 201 LSGLSSL-------KKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIE-SLPTSIS 248 (369)
Q Consensus 201 ~~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~ 248 (369)
+.. +| +.|++++|.+..+|..+..+++|++|++++|.++ .+|..+.
T Consensus 198 ~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 251 (571)
T 3cvr_A 198 VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLS 251 (571)
T ss_dssp CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHH
T ss_pred HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHH
Confidence 332 45 6666666666666665555666666666666665 4444443
No 96
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.75 E-value=1.4e-20 Score=181.65 Aligned_cols=127 Identities=17% Similarity=0.157 Sum_probs=61.8
Q ss_pred CCCCccEEecCCCCCccccC----CccCCeeEEecCCc-cCcc--cCccCCCCCCCCEEeCcCCccccc----ccccccC
Q 017542 17 HFISSIKIDCYKCVNLREFP----RISGNVVELNLMCT-PIEE--VPLSIECLPNLETLEMSFCNSLKR----LSTSICK 85 (369)
Q Consensus 17 ~~~~L~~L~l~~~~~l~~~~----~~~~~L~~L~l~~~-~~~~--l~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~ 85 (369)
.+++|++|++++|......+ ..+++|++|+++++ .++. ++.....+++|++|++++|..... ++.....
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 35566666666655211111 12336666666444 3432 333334566666666666553221 1222224
Q ss_pred CCCCcEEecCCCc-CC--ccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeec
Q 017542 86 LKSLRSLDLSYCI-NL--ESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLT 143 (369)
Q Consensus 86 ~~~L~~L~l~~~~-~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 143 (369)
+++|++|++++|. .. ..+...+..+++|++|++++|.....++..+..+++|++|++.
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~ 243 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG 243 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECS
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccc
Confidence 5566666666654 01 1122233445666666666654444444555555566666543
No 97
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.75 E-value=1e-20 Score=182.65 Aligned_cols=218 Identities=20% Similarity=0.213 Sum_probs=141.6
Q ss_pred CCCCccEEecCCCCCccccC------------------CccCCeeEEecCCccCcc-cCccCC-CCCCCCEEeCcCCccc
Q 017542 17 HFISSIKIDCYKCVNLREFP------------------RISGNVVELNLMCTPIEE-VPLSIE-CLPNLETLEMSFCNSL 76 (369)
Q Consensus 17 ~~~~L~~L~l~~~~~l~~~~------------------~~~~~L~~L~l~~~~~~~-l~~~~~-~~~~L~~L~l~~~~~~ 76 (369)
.+++|+.|+++++....++. ...++|++|+++++.++. .+..+. .+++|++|++++|...
T Consensus 64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~ 143 (594)
T 2p1m_B 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF 143 (594)
T ss_dssp HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence 67899999999987554432 123389999998888763 222333 6899999999998655
Q ss_pred cc--ccccccCCCCCcEEecCCCcCCcc----CchhhhccCccceeeccccc-ccc--ccchhhhcCCCCCeEeecCCCC
Q 017542 77 KR--LSTSICKLKSLRSLDLSYCINLES----FPEILEKMELLEEINLEEAS-NIK--ELPSSIENLEGLKQLKLTGCTK 147 (369)
Q Consensus 77 ~~--~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~-~~~--~~~~~~~~l~~L~~L~l~~~~~ 147 (369)
+. ++..+.++++|++|++++|..... ++.....+++|++|++++|. .+. .+......+++|++|++++|..
T Consensus 144 ~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~ 223 (594)
T 2p1m_B 144 STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP 223 (594)
T ss_dssp EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC
T ss_pred CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc
Confidence 43 455455799999999999874433 23334578899999999876 111 2333345689999999999855
Q ss_pred CCCCCcccCCCcchhhhccCccc-------------------------------CCCCCcccccCCCCcEEeecCCCCCC
Q 017542 148 LGSLPESLGNLKSLERLHAGLLA-------------------------------IPQAPSSIVDLNKLETLSLFECRGLV 196 (369)
Q Consensus 148 ~~~~~~~~~~l~~L~~L~l~~~~-------------------------------~~~~~~~l~~~~~L~~L~l~~~~~~~ 196 (369)
.+.++..+..+++|++|+++.+. ...++..+..+++|++|++++|....
T Consensus 224 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~ 303 (594)
T 2p1m_B 224 LEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQS 303 (594)
T ss_dssp HHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCH
T ss_pred HHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCH
Confidence 44455455566666666644332 11222233356788888888877321
Q ss_pred --CCccccCCCCCcEEeccCCCCcc--CCCCCCCCCCCCEEEc
Q 017542 197 --LPPLLSGLSSLKKLELGDCEIME--IPPDIGCLSSLESLNL 235 (369)
Q Consensus 197 --~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l 235 (369)
+...+..+++|+.|++++| +.. +......+++|++|++
T Consensus 304 ~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L 345 (594)
T 2p1m_B 304 YDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRV 345 (594)
T ss_dssp HHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEE
T ss_pred HHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEE
Confidence 2223556788888888877 322 2111233566777766
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.74 E-value=5.3e-17 Score=153.99 Aligned_cols=180 Identities=21% Similarity=0.234 Sum_probs=148.5
Q ss_pred CCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEee
Q 017542 63 PNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKL 142 (369)
Q Consensus 63 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 142 (369)
.+|++|++++|... .+|..+ +++|++|++++|... .+| ..+++|++|++++|.... +|. +.. +|++|++
T Consensus 59 ~~L~~L~Ls~n~L~-~lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLNLS-SLPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSCCS-CCCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CCccEEEeCCCCCC-ccCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 38999999997654 477655 388999999998655 666 568999999999876544 666 544 9999999
Q ss_pred cCCCCCCCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCC
Q 017542 143 TGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPP 222 (369)
Q Consensus 143 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 222 (369)
++|.. +.+|. .+++|+.|++++|.++.+|. .+++|+.|++++|....+|. +. ++|+.|++++|.+..+|.
T Consensus 128 s~N~l-~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~ 197 (571)
T 3cvr_A 128 DNNQL-TMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA 197 (571)
T ss_dssp CSSCC-SCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC
T ss_pred CCCcC-CCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh
Confidence 99654 44765 68899999999999998887 57899999999999888888 55 899999999999999887
Q ss_pred CCCCCCCC-------CEEEccCCcCCccchhhccCCcCcEecccCCccccc
Q 017542 223 DIGCLSSL-------ESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQS 266 (369)
Q Consensus 223 ~~~~~~~L-------~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~ 266 (369)
+.. +| ++|++++|.++.+|..+..+++|+.|++++|+--..
T Consensus 198 -~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 198 -VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp -CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHH
T ss_pred -HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCc
Confidence 443 77 999999999999999898899999999999954333
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=2.4e-17 Score=144.38 Aligned_cols=183 Identities=26% Similarity=0.308 Sum_probs=95.6
Q ss_pred EEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeecccccc
Q 017542 44 ELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASN 123 (369)
Q Consensus 44 ~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 123 (369)
.+.+....++.+.. ...+++|++|++++|.. ..++. +..+++|++|++++|.... ++. +..+++|++|++++|..
T Consensus 28 ~~~l~~~~~~~~~~-~~~l~~L~~L~l~~~~i-~~~~~-~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l 102 (291)
T 1h6t_A 28 KDNLKKKSVTDAVT-QNELNSIDQIIANNSDI-KSVQG-IQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKV 102 (291)
T ss_dssp HHHTTCSCTTSEEC-HHHHHTCCEEECTTSCC-CCCTT-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCC
T ss_pred HHHhcCCCcccccc-hhhcCcccEEEccCCCc-ccChh-HhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcC
Confidence 33444444443322 34456677777776543 33333 5566677777777654433 222 56666666666665543
Q ss_pred ccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCccccC
Q 017542 124 IKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSG 203 (369)
Q Consensus 124 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 203 (369)
. .++ .+..+++|++|++++| .+..+ ..+..+++|+.|++++|....+ ..+..
T Consensus 103 ~-~~~-~l~~l~~L~~L~L~~n------------------------~i~~~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~ 154 (291)
T 1h6t_A 103 K-DLS-SLKDLKKLKSLSLEHN------------------------GISDI-NGLVHLPQLESLYLGNNKITDI-TVLSR 154 (291)
T ss_dssp C-CGG-GGTTCTTCCEEECTTS------------------------CCCCC-GGGGGCTTCCEEECCSSCCCCC-GGGGG
T ss_pred C-CCh-hhccCCCCCEEECCCC------------------------cCCCC-hhhcCCCCCCEEEccCCcCCcc-hhhcc
Confidence 2 222 2455555555555554 33333 2344445555555555554444 23445
Q ss_pred CCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccchhhccCCcCcEecccCC
Q 017542 204 LSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNC 261 (369)
Q Consensus 204 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~ 261 (369)
+++|+.|++++|.+.+++. +..+++|++|++++|.++.++. +..+++|+.|++++|
T Consensus 155 l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 155 LTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQ 210 (291)
T ss_dssp CTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEE
T ss_pred CCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCC
Confidence 5555555555555555433 4555555566666555555542 555556666666555
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=1.9e-17 Score=144.98 Aligned_cols=187 Identities=23% Similarity=0.267 Sum_probs=122.7
Q ss_pred ccEEecCCCCCccccCC--ccCCeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCc
Q 017542 21 SIKIDCYKCVNLREFPR--ISGNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCI 98 (369)
Q Consensus 21 L~~L~l~~~~~l~~~~~--~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 98 (369)
+..+.+.... +.++.. .+.+|++|+++++.++.++. +..+++|++|++++|.... ++. +..+++|++|++++|.
T Consensus 26 ~~~~~l~~~~-~~~~~~~~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~ 101 (291)
T 1h6t_A 26 TIKDNLKKKS-VTDAVTQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENK 101 (291)
T ss_dssp HHHHHTTCSC-TTSEECHHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSC
T ss_pred HHHHHhcCCC-cccccchhhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCc
Confidence 4444555554 444332 23399999999999998865 7889999999999976554 444 8899999999999986
Q ss_pred CCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCccc
Q 017542 99 NLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSI 178 (369)
Q Consensus 99 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l 178 (369)
... ++ .+..+++|++|++++|.... + ..+..+++|+.|++++|... .+ ..+..+
T Consensus 102 l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~-~~-~~l~~l-------------------- 155 (291)
T 1h6t_A 102 VKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKIT-DI-TVLSRL-------------------- 155 (291)
T ss_dssp CCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCC-CC-GGGGGC--------------------
T ss_pred CCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCC-cc-hhhccC--------------------
Confidence 543 44 48899999999999876443 3 35677888888888875432 22 234444
Q ss_pred ccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCc
Q 017542 179 VDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIES 242 (369)
Q Consensus 179 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 242 (369)
++|+.|++++|....++. +..+++|+.|++++|.+.+++. +..+++|+.|++++|.++.
T Consensus 156 ---~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 156 ---TKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp ---TTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEEC
T ss_pred ---CCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcccC
Confidence 445555555554444433 4445555555555555555432 4555556666666555543
No 101
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.72 E-value=6.3e-17 Score=134.54 Aligned_cols=68 Identities=19% Similarity=0.182 Sum_probs=34.9
Q ss_pred ccCCCCcEEeecCCCCCCCCc-cccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCC-ccchhhccCCc
Q 017542 179 VDLNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIE-SLPTSISQLSR 252 (369)
Q Consensus 179 ~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~ 252 (369)
..+++|++|++++|....++. .+..+++|+.|++++|.+. ..+++|++|+++.|.++ .+|..++.++.
T Consensus 121 ~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 121 DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 344455555555554443333 2445555666666555332 23455666666666665 55555554433
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=3e-17 Score=135.28 Aligned_cols=148 Identities=16% Similarity=0.201 Sum_probs=83.4
Q ss_pred CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccc
Q 017542 41 NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEE 120 (369)
Q Consensus 41 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 120 (369)
+|++|+++++.++.++ .+..+++|++|++++| ....++ .+..+++|++|++++|......+..+..+++|++|++++
T Consensus 45 ~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~ 121 (197)
T 4ezg_A 45 SLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121 (197)
T ss_dssp TCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCS
T ss_pred CccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecC
Confidence 6666777666666666 4666667777777666 233332 356666677777766655544555566666666666666
Q ss_pred cccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCC
Q 017542 121 ASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECR 193 (369)
Q Consensus 121 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~ 193 (369)
|......+..+..+++|++|++++|..++.++ .+..+++|++|++++|.+..++ .+..+++|+.|++++|.
T Consensus 122 n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 122 SAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp SBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred CccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcc
Confidence 65555455556666666666666654344443 3444444555555444444433 34444444444444443
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.71 E-value=8.7e-17 Score=133.70 Aligned_cols=174 Identities=17% Similarity=0.142 Sum_probs=80.5
Q ss_pred EEecCCCCCccccCCccC-CeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCC
Q 017542 23 KIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINL 100 (369)
Q Consensus 23 ~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 100 (369)
.++++++. +..+|.... +|++|+++++.++.++. .+..+++|++|++++|......+..+..+++|++|++++|...
T Consensus 11 ~v~c~~~~-l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 89 (208)
T 2o6s_A 11 TVECYSQG-RTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ 89 (208)
T ss_dssp EEECCSSC-CSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EEEecCCC-ccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC
Confidence 34444444 444443333 55555555555554443 2344555555555554333222223344455555555544333
Q ss_pred ccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcc-cc
Q 017542 101 ESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSS-IV 179 (369)
Q Consensus 101 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-l~ 179 (369)
...+..+..+++|++|++++|... ...+..+..+++|++|++++|.+..++.. +.
T Consensus 90 ~~~~~~~~~l~~L~~L~L~~N~l~------------------------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 145 (208)
T 2o6s_A 90 SLPNGVFDKLTQLKELALNTNQLQ------------------------SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFD 145 (208)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCC------------------------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred ccCHhHhcCccCCCEEEcCCCcCc------------------------ccCHhHhccCCcCCEEECCCCccceeCHHHhc
Confidence 222233344444444444433322 22222234444555555555554444332 45
Q ss_pred cCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCcc-CCCCCCCC
Q 017542 180 DLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIME-IPPDIGCL 227 (369)
Q Consensus 180 ~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~ 227 (369)
.+++|++|++++|.. ...+++|+.|+++.|.+.+ +|.+++.+
T Consensus 146 ~l~~L~~L~l~~N~~------~~~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 146 RLTSLQYIWLHDNPW------DCTCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp TCTTCCEEECCSCCB------CCCTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred cCCCccEEEecCCCe------ecCCCCHHHHHHHHHhCCceeeccCccc
Confidence 556666666666642 2334566666666666665 55554443
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.69 E-value=8.2e-17 Score=154.25 Aligned_cols=168 Identities=23% Similarity=0.240 Sum_probs=80.8
Q ss_pred CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccc
Q 017542 41 NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEE 120 (369)
Q Consensus 41 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 120 (369)
+|+.|+++++.+..++. +..+++|+.|+|++|.... ++. +..+++|+.|++++|... .++ .+..+++|++|++++
T Consensus 44 ~L~~L~l~~n~i~~l~~-l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N~l~-~l~-~l~~l~~L~~L~Ls~ 118 (605)
T 1m9s_A 44 SIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSLEH 118 (605)
T ss_dssp TCCCCBCTTCCCCCCTT-GGGCTTCCEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCC-CCT-TSTTCTTCCEEECTT
T ss_pred CCCEEECcCCCCCCChH-HccCCCCCEEEeeCCCCCC-Chh-hccCCCCCEEECcCCCCC-CCh-hhccCCCCCEEEecC
Confidence 56666666666655543 5556666666666654332 222 555666666666665332 222 355555555665554
Q ss_pred cccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCcc
Q 017542 121 ASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPL 200 (369)
Q Consensus 121 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 200 (369)
|.... + ..+..+++|+.|++++|... .+ ..+..+++|+.|++++|.+..++. +..+++|+.|++++|....++ .
T Consensus 119 N~l~~-l-~~l~~l~~L~~L~Ls~N~l~-~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~-~ 192 (605)
T 1m9s_A 119 NGISD-I-NGLVHLPQLESLYLGNNKIT-DI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR-A 192 (605)
T ss_dssp SCCCC-C-GGGGGCTTCSEEECCSSCCC-CC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG-G
T ss_pred CCCCC-C-ccccCCCccCEEECCCCccC-Cc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCCh-H
Confidence 44322 2 23445555555555554322 22 234444444444444444444332 444444444444444433332 2
Q ss_pred ccCCCCCcEEeccCCCCcc
Q 017542 201 LSGLSSLKKLELGDCEIME 219 (369)
Q Consensus 201 ~~~~~~L~~L~l~~~~~~~ 219 (369)
+..+++|+.|++++|.+..
T Consensus 193 l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 193 LAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp GTTCTTCSEEECCSEEEEC
T ss_pred HccCCCCCEEEccCCcCcC
Confidence 3444444444444444433
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.68 E-value=3.4e-16 Score=131.22 Aligned_cols=148 Identities=16% Similarity=0.128 Sum_probs=88.5
Q ss_pred cEEecCCCCCccccCCccC-CeeEEecCCccCcccCc--cCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCc
Q 017542 22 IKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPL--SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCI 98 (369)
Q Consensus 22 ~~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 98 (369)
+.++++++. +..+|..++ .+++|++++|.++.++. .+..+++|++|++++|......+..+.++++|++|++++|.
T Consensus 14 ~~l~~s~n~-l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQK-LNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSC-CSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCCC-cccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 467777766 667776555 67777777777776532 35667777777777765544444456667777777777765
Q ss_pred CCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCccc
Q 017542 99 NLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLA 170 (369)
Q Consensus 99 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 170 (369)
.....+..+..+++|++|++++|......+..+..+++|++|++++|...+..+..+..+++|+.|++++|.
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 555555556666666666666655544445555555666666665544333334444444444444444443
No 106
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.68 E-value=2.7e-18 Score=163.54 Aligned_cols=105 Identities=23% Similarity=0.258 Sum_probs=67.6
Q ss_pred hhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcC
Q 017542 161 LERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNI 240 (369)
Q Consensus 161 L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l 240 (369)
|+.|++++|.++.+|. +..+++|+.|++++|....+|..++.+++|+.|++++|.+.++| .+..+++|++|++++|.+
T Consensus 443 L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l 520 (567)
T 1dce_A 443 VRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRL 520 (567)
T ss_dssp CSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCC
T ss_pred ceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCC
Confidence 5556666666666654 66666666666666666666666666666666666666666655 566666666666666666
Q ss_pred Ccc--chhhccCCcCcEecccCCcccccCC
Q 017542 241 ESL--PTSISQLSRLRWLYLVNCVKLQSLP 268 (369)
Q Consensus 241 ~~~--~~~~~~~~~L~~L~l~~~~~l~~~~ 268 (369)
+.+ |..++.+++|+.|++++| .++.+|
T Consensus 521 ~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~ 549 (567)
T 1dce_A 521 QQSAAIQPLVSCPRLVLLNLQGN-SLCQEE 549 (567)
T ss_dssp CSSSTTGGGGGCTTCCEEECTTS-GGGGSS
T ss_pred CCCCCcHHHhcCCCCCEEEecCC-cCCCCc
Confidence 655 566666666777776666 344443
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.68 E-value=4.8e-16 Score=130.29 Aligned_cols=124 Identities=20% Similarity=0.161 Sum_probs=77.2
Q ss_pred cEEecCCCCCccccCCccC-CeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcC
Q 017542 22 IKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCIN 99 (369)
Q Consensus 22 ~~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 99 (369)
+.++++++. +..+|..++ +++.|++++|.++.++. .+..+++|++|++++|......+..+.++++|++|++++|..
T Consensus 14 ~~v~c~~~~-l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 14 NIVDCRGKG-LTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp TEEECTTSC-CSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred CEEEcCCCC-cCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 466777666 677776554 77777777777776654 566677777777777665555566666677777777777654
Q ss_pred CccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCC
Q 017542 100 LESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCT 146 (369)
Q Consensus 100 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 146 (369)
....+..+..+++|++|++++|......+..+..+++|++|++++|.
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 139 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK 139 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc
Confidence 43333445566666666666555444444455555555555555543
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.68 E-value=5.3e-16 Score=148.63 Aligned_cols=192 Identities=24% Similarity=0.271 Sum_probs=128.9
Q ss_pred CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccc
Q 017542 41 NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEE 120 (369)
Q Consensus 41 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 120 (369)
.+..+.+..+.+..+.. +..+++|+.|++++|.. ..++ .+..+++|+.|++++|..... +. +..+++|++|++++
T Consensus 22 ~l~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i-~~l~-~l~~l~~L~~L~Ls~N~l~~~-~~-l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDI-KSVQ-GIQYLPNVTKLFLNGNKLTDI-KP-LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCCC-CCCT-TGGGCTTCCEEECTTSCCCCC-GG-GGGCTTCCEEECCS
T ss_pred HHHHHhccCCCcccccc-hhcCCCCCEEECcCCCC-CCCh-HHccCCCCCEEEeeCCCCCCC-hh-hccCCCCCEEECcC
Confidence 45555666666655433 45677888888888654 3444 377788888888888755443 33 77888888888887
Q ss_pred cccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCcc
Q 017542 121 ASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPL 200 (369)
Q Consensus 121 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 200 (369)
|... .++ .+..+++|+.|++++|... .++ .+..+++|+.|++++|.+..+ ..+..+++|+.|++++|....++.
T Consensus 97 N~l~-~l~-~l~~l~~L~~L~Ls~N~l~-~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~- 170 (605)
T 1m9s_A 97 NKIK-DLS-SLKDLKKLKSLSLEHNGIS-DIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP- 170 (605)
T ss_dssp SCCC-CCT-TSTTCTTCCEEECTTSCCC-CCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-
T ss_pred CCCC-CCh-hhccCCCCCEEEecCCCCC-CCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-
Confidence 6543 333 5677778888888775533 333 466677777777777777666 556667777777777777655554
Q ss_pred ccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccc
Q 017542 201 LSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLP 244 (369)
Q Consensus 201 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 244 (369)
+..+++|+.|++++|.+.+++ .+..+++|+.|++++|.+...|
T Consensus 171 l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 171 LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEECCC
T ss_pred hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcCCc
Confidence 666777777777777776653 3666777777777777666443
No 109
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=1.5e-16 Score=131.04 Aligned_cols=150 Identities=19% Similarity=0.189 Sum_probs=81.8
Q ss_pred CCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhc
Q 017542 86 LKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLH 165 (369)
Q Consensus 86 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 165 (369)
+++|++|++++|... .++ .+..+++|++|++++| .+..+ ..+..+++|++|++++|......+..+..+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n-~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNI-HATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESC-CCSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCC-CCCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 344444444443222 223 3444444555555444 12222 2344455555555555443333344455555555566
Q ss_pred cCcccCCC-CCcccccCCCCcEEeecCCC-CCCCCccccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCC
Q 017542 166 AGLLAIPQ-APSSIVDLNKLETLSLFECR-GLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIE 241 (369)
Q Consensus 166 l~~~~~~~-~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 241 (369)
+++|.+.. .+..+..+++|++|++++|. ...++ .+..+++|+.|++++|.+.+++ .+..+++|++|++++|.+.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC---
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccC
Confidence 65555553 34455666777777777776 55555 4666777777777777777755 4666777888888777654
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.66 E-value=5e-16 Score=140.31 Aligned_cols=170 Identities=19% Similarity=0.188 Sum_probs=125.6
Q ss_pred cEEecCCCCCccccCCccC-CeeEEecCCccCcccCcc-CC-CCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCc
Q 017542 22 IKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPLS-IE-CLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCI 98 (369)
Q Consensus 22 ~~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 98 (369)
+.++++++. +..+|..++ .++.|++++|.++.++.. +. .+++|++|++++|......+..+..+++|++|++++|.
T Consensus 21 ~~l~c~~~~-l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 21 NILSCSKQQ-LPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp TEEECCSSC-CSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCC-cCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 578888887 888887666 889999999999877654 54 78999999999876665555678888999999999987
Q ss_pred CCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcc-c---CCCcchhhhccCcccCCCC
Q 017542 99 NLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPES-L---GNLKSLERLHAGLLAIPQA 174 (369)
Q Consensus 99 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~---~~l~~L~~L~l~~~~~~~~ 174 (369)
.....+..+..+++|++|++++|......+..+..+++|++|++++|. +..++.. + ..+++|+.|++++|.+..+
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 665556678888999999998877666666778888888888888854 4444433 2 4577777777777777766
Q ss_pred C-cccccCCC--CcEEeecCCC
Q 017542 175 P-SSIVDLNK--LETLSLFECR 193 (369)
Q Consensus 175 ~-~~l~~~~~--L~~L~l~~~~ 193 (369)
+ ..+..++. ++.|++++|+
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSC
T ss_pred CHHHhhhccHhhcceEEecCCC
Confidence 5 23444554 3667777665
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.66 E-value=1.5e-15 Score=127.19 Aligned_cols=150 Identities=18% Similarity=0.191 Sum_probs=91.2
Q ss_pred eEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccc
Q 017542 43 VELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEAS 122 (369)
Q Consensus 43 ~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 122 (369)
+.++.+++.++.+|..+. ++|++|++++|......+..+..+++|++|++++|......+..+..+++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 456777777777776543 678888888866554444466777788888887776655556677777777777777655
Q ss_pred cccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCc-cc
Q 017542 123 NIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPP-LL 201 (369)
Q Consensus 123 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~ 201 (369)
.....+..+..+++|++|++++|......+.. +..+++|+.|++++|....++. .+
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~-----------------------~~~l~~L~~L~L~~N~l~~~~~~~~ 148 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDA-----------------------FQDLHNLNLLSLYDNKLQTIAKGTF 148 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-----------------------TTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHH-----------------------cCCCCCCCEEECCCCcCCEECHHHH
Confidence 44333334455666666666664433333333 4445555555555555444443 35
Q ss_pred cCCCCCcEEeccCCCC
Q 017542 202 SGLSSLKKLELGDCEI 217 (369)
Q Consensus 202 ~~~~~L~~L~l~~~~~ 217 (369)
..+++|+.|++++|++
T Consensus 149 ~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 149 SPLRAIQTMHLAQNPF 164 (220)
T ss_dssp TTCTTCCEEECCSSCE
T ss_pred hCCCCCCEEEeCCCCc
Confidence 5556666666666654
No 112
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.65 E-value=4.2e-18 Score=162.23 Aligned_cols=194 Identities=20% Similarity=0.169 Sum_probs=144.4
Q ss_pred CCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCc-------------CCccCchhhhccCccceee-cccccccc
Q 017542 60 ECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCI-------------NLESFPEILEKMELLEEIN-LEEASNIK 125 (369)
Q Consensus 60 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------~~~~~~~~~~~l~~L~~L~-l~~~~~~~ 125 (369)
..+++|+.|++++|. .+.+|..++.+++|+.|++++|. .....|..++.+++|+.|+ ++.+. ..
T Consensus 346 ~~~~~L~~L~Ls~n~-L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~-~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEK-STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY-LD 423 (567)
T ss_dssp STTTTSSSCCCCHHH-HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH-HH
T ss_pred ccCccceeccCChhh-HHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc-cc
Confidence 567888888888854 45778888888888888886653 3344566777888888887 44332 11
Q ss_pred ccch------hhhc--CCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCC
Q 017542 126 ELPS------SIEN--LEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVL 197 (369)
Q Consensus 126 ~~~~------~~~~--l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 197 (369)
.++. .+.. ...|+.|++++|. ++.+|. ++.+++|+.|++++|.+..+|..+..+++|+.|++++|....+
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l 501 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 501 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTSC-CSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred hhhhhhhhcccccccCccCceEEEecCCC-CCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCC
Confidence 1111 1111 1368889998864 455675 8888889999999998888888888889999999999887777
Q ss_pred CccccCCCCCcEEeccCCCCccC--CCCCCCCCCCCEEEccCCcCCccchh----hccCCcCcEecc
Q 017542 198 PPLLSGLSSLKKLELGDCEIMEI--PPDIGCLSSLESLNLSGNNIESLPTS----ISQLSRLRWLYL 258 (369)
Q Consensus 198 ~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~l~~~~~~----~~~~~~L~~L~l 258 (369)
| .++.+++|+.|++++|.+.++ |..+..+++|++|++++|.++.+|.. +..+|+|+.|++
T Consensus 502 p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 502 D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 7 688888999999999988886 77788888999999999988866543 244788888753
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.65 E-value=2.5e-16 Score=135.74 Aligned_cols=167 Identities=20% Similarity=0.260 Sum_probs=78.7
Q ss_pred CCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEee
Q 017542 63 PNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKL 142 (369)
Q Consensus 63 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 142 (369)
.++..++++++. .+.++ .+..+++|++|++++|.. ..++ .+..+++|++|++++|.. ..++. +..+++|++|++
T Consensus 19 ~~l~~l~l~~~~-i~~~~-~~~~l~~L~~L~l~~n~i-~~l~-~l~~l~~L~~L~L~~N~i-~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQS-VTDLV-SQKELSGVQNFNGDNSNI-QSLA-GMQFFTNLKELHLSHNQI-SDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSC-TTSEE-CHHHHTTCSEEECTTSCC-CCCT-TGGGCTTCCEEECCSSCC-CCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCC-ccccc-chhhcCcCcEEECcCCCc-ccch-HHhhCCCCCEEECCCCcc-CCChh-hccCCCCCEEEC
Confidence 344455555533 22333 245566666666666533 2333 455666666666665443 22333 555566666666
Q ss_pred cCCCCCCCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCC
Q 017542 143 TGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPP 222 (369)
Q Consensus 143 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 222 (369)
++|. ++.++. +.. ++|++|++++|.+..++ .+..+++|+.|++++|....++ .+..+++|+.|++++|.+.++ .
T Consensus 93 ~~N~-l~~l~~-~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~ 166 (263)
T 1xeu_A 93 NRNR-LKNLNG-IPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-G 166 (263)
T ss_dssp CSSC-CSCCTT-CCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-T
T ss_pred CCCc-cCCcCc-ccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-H
Confidence 6543 222322 111 44555555555444432 3444444555555444444333 234444444444444444444 2
Q ss_pred CCCCCCCCCEEEccCCcCC
Q 017542 223 DIGCLSSLESLNLSGNNIE 241 (369)
Q Consensus 223 ~~~~~~~L~~L~l~~~~l~ 241 (369)
.+..+++|++|++++|.++
T Consensus 167 ~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 167 GLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp TSTTCCCCCEEEEEEEEEE
T ss_pred HhccCCCCCEEeCCCCccc
Confidence 3444444444444444443
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.65 E-value=5.9e-16 Score=139.85 Aligned_cols=174 Identities=20% Similarity=0.110 Sum_probs=121.9
Q ss_pred eeEEecCCccCcccCccCCCCCCCCEEeCcCCccccccccccc-CCCCCcEEecCCCcCCccCchhhhccCccceeeccc
Q 017542 42 VVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSIC-KLKSLRSLDLSYCINLESFPEILEKMELLEEINLEE 120 (369)
Q Consensus 42 L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 120 (369)
-+.++++++.++.+|..+. +.+++|++++|......+..+. .+++|++|++++|......+..+..+++|++|++++
T Consensus 20 ~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TTEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 3578888888988887543 5689999999766555455565 789999999999876666667788899999999998
Q ss_pred cccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCccc----ccCCCCcEEeecCCCCCC
Q 017542 121 ASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSI----VDLNKLETLSLFECRGLV 196 (369)
Q Consensus 121 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l----~~~~~L~~L~l~~~~~~~ 196 (369)
|......+..+..+++|+.|++++|......+..+..+++|+.|++++|.+..++..+ ..+++|+.|++++|....
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 7755555556778888888888887655555566777777777777777777666543 346667777777666555
Q ss_pred CCc-cccCCCC--CcEEeccCCCC
Q 017542 197 LPP-LLSGLSS--LKKLELGDCEI 217 (369)
Q Consensus 197 ~~~-~~~~~~~--L~~L~l~~~~~ 217 (369)
++. .+..++. ++.|++++|++
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCE
T ss_pred cCHHHhhhccHhhcceEEecCCCc
Confidence 552 3333443 25566666554
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.64 E-value=3.9e-15 Score=125.57 Aligned_cols=146 Identities=18% Similarity=0.151 Sum_probs=65.1
Q ss_pred EecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccccc
Q 017542 45 LNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNI 124 (369)
Q Consensus 45 L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 124 (369)
++.+++.++.+|..+. ++|++|++++|......+..+..+++|++|++++|......+..+..+++|++|++++|...
T Consensus 24 v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~ 101 (229)
T 3e6j_A 24 VDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT 101 (229)
T ss_dssp EECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred eEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCC
Confidence 3444444444443221 34444444444333333333444444444444444332222233344444444444444332
Q ss_pred cccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCc-ccccCCCCcEEeecCCC
Q 017542 125 KELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPS-SIVDLNKLETLSLFECR 193 (369)
Q Consensus 125 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~ 193 (369)
...+..+..+++|++|++++|. +..+|..+..+++|++|++++|.+..++. .+..+++|+.|++++|.
T Consensus 102 ~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 102 VLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred ccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 2222333444455555554432 23444444555555555555555554442 34555666666666665
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.64 E-value=3.3e-15 Score=125.18 Aligned_cols=151 Identities=19% Similarity=0.138 Sum_probs=90.0
Q ss_pred eEEecCCccCcccCccCCCCCCCCEEeCcCCccccccc-ccccCCCCCcEEecCCCcCCccCchhhhccCccceeecccc
Q 017542 43 VELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLS-TSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEA 121 (369)
Q Consensus 43 ~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 121 (369)
+.++++++.++.+|..+. +.+++|++++|......+ ..+..+++|++|++++|......+..+..+++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 467777777777776442 456788888765544323 34667777777777776655545556677777777777766
Q ss_pred ccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCC-Ccc
Q 017542 122 SNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVL-PPL 200 (369)
Q Consensus 122 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~ 200 (369)
......+..+..+++|++|++++|......+..+. .+++|+.|++++|....+ |..
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-----------------------~l~~L~~L~L~~N~l~~~~~~~ 148 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFI-----------------------GLSSVRLLSLYDNQITTVAPGA 148 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSST-----------------------TCTTCSEEECTTSCCCCBCTTT
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcC-----------------------CCccCCEEECCCCcCCEECHHH
Confidence 55444444566666666666666544333344444 445555555555554433 344
Q ss_pred ccCCCCCcEEeccCCCCc
Q 017542 201 LSGLSSLKKLELGDCEIM 218 (369)
Q Consensus 201 ~~~~~~L~~L~l~~~~~~ 218 (369)
+..+++|+.|++++|.+.
T Consensus 149 ~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 149 FDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TTTCTTCCEEECCSCCEE
T ss_pred hcCCCCCCEEEecCcCCc
Confidence 555556666666665543
No 117
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.63 E-value=3.8e-15 Score=125.59 Aligned_cols=151 Identities=18% Similarity=0.090 Sum_probs=93.4
Q ss_pred CCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecC
Q 017542 65 LETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTG 144 (369)
Q Consensus 65 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 144 (369)
-+.++.++ ...+.+|..+. ++|++|++++|......+..+..+++|++|++++|......+..+..+++|+.|++++
T Consensus 21 ~~~v~c~~-~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRS-KRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTT-SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccC-CCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 34566655 33445554332 6677777777665555566666777777777776654333334456667777777777
Q ss_pred CCCCCCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCc-cccCCCCCcEEeccCCCCc
Q 017542 145 CTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIM 218 (369)
Q Consensus 145 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~ 218 (369)
|......+..+..+++|++|++++|.+..+|..+..+++|+.|++++|....++. .+..+++|+.|++++|++.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 5443333344566677777777777777666666667777777777776655553 4566667777777776554
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.61 E-value=1.5e-15 Score=130.85 Aligned_cols=167 Identities=22% Similarity=0.204 Sum_probs=84.3
Q ss_pred CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccc
Q 017542 41 NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEE 120 (369)
Q Consensus 41 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 120 (369)
+++.++++.+.+++++ .+..+++|++|++++|. ...++ .+..+++|++|++++|.... ++. +..+++|++|++++
T Consensus 20 ~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCS
T ss_pred HHHHHHhcCCCccccc-chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCC
Confidence 4444555555555444 24455555666665543 22333 34555556666665543332 222 55555666666654
Q ss_pred cccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCcc
Q 017542 121 ASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPL 200 (369)
Q Consensus 121 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 200 (369)
|.... ++.. .. ++|++|++++|. ++.++ .+..+++|++|++++|.++.++ .+..+++|+.|++++|....+ ..
T Consensus 95 N~l~~-l~~~-~~-~~L~~L~L~~N~-l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~ 167 (263)
T 1xeu_A 95 NRLKN-LNGI-PS-ACLSRLFLDNNE-LRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GG 167 (263)
T ss_dssp SCCSC-CTTC-CC-SSCCEEECCSSC-CSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-TT
T ss_pred CccCC-cCcc-cc-CcccEEEccCCc-cCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-HH
Confidence 43322 2221 11 555666665543 22232 3555555666666665555543 455555566666665554444 33
Q ss_pred ccCCCCCcEEeccCCCCcc
Q 017542 201 LSGLSSLKKLELGDCEIME 219 (369)
Q Consensus 201 ~~~~~~L~~L~l~~~~~~~ 219 (369)
+..+++|+.|++++|.+..
T Consensus 168 l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 168 LTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp STTCCCCCEEEEEEEEEEC
T ss_pred hccCCCCCEEeCCCCcccC
Confidence 4555556666665555544
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.59 E-value=3.6e-15 Score=119.47 Aligned_cols=132 Identities=25% Similarity=0.310 Sum_probs=93.7
Q ss_pred CCCCeEeecCCCCC-CCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCC-CCccccCCCCCcEEec
Q 017542 135 EGLKQLKLTGCTKL-GSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLV-LPPLLSGLSSLKKLEL 212 (369)
Q Consensus 135 ~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l 212 (369)
+++++|++++|... ..++..+..+++|++|++++|.+..+ ..+..+++|+.|++++|.... +|..+..+++|+.|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 45666666665533 25555556666677777777666665 566677788888888887655 5555666788888888
Q ss_pred cCCCCccCC--CCCCCCCCCCEEEccCCcCCccch----hhccCCcCcEecccCCcccccCC
Q 017542 213 GDCEIMEIP--PDIGCLSSLESLNLSGNNIESLPT----SISQLSRLRWLYLVNCVKLQSLP 268 (369)
Q Consensus 213 ~~~~~~~~~--~~~~~~~~L~~L~l~~~~l~~~~~----~~~~~~~L~~L~l~~~~~l~~~~ 268 (369)
++|.+.+++ ..+..+++|++|++++|.++.++. .+..+++|++|++++| .+..+|
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~ 163 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAP 163 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET-TSCBCC
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC-Chhhcc
Confidence 888887754 557778888888888888887765 6778888888888888 344433
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.55 E-value=9.5e-15 Score=116.98 Aligned_cols=133 Identities=22% Similarity=0.210 Sum_probs=79.9
Q ss_pred CCCcEEecCCCcCC-ccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhc
Q 017542 87 KSLRSLDLSYCINL-ESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLH 165 (369)
Q Consensus 87 ~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 165 (369)
++|++|++++|... ..+|..+..+++|++|++++|.. ..+ ..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l-------------------------~~~-~~~~~l~~L~~L~ 77 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL-------------------------ISV-SNLPKLPKLKKLE 77 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCC-------------------------CCC-SSCCCCSSCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCC-------------------------CCh-hhhccCCCCCEEE
Confidence 55666666655433 24444445555555555554432 222 3344455555555
Q ss_pred cCcccCCC-CCcccccCCCCcEEeecCCCCCCCC--ccccCCCCCcEEeccCCCCccCCC----CCCCCCCCCEEEccCC
Q 017542 166 AGLLAIPQ-APSSIVDLNKLETLSLFECRGLVLP--PLLSGLSSLKKLELGDCEIMEIPP----DIGCLSSLESLNLSGN 238 (369)
Q Consensus 166 l~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~L~~L~l~~~ 238 (369)
+++|.+.. +|..+..+++|+.|++++|....++ ..+..+++|+.|++++|.+..++. .+..+++|++|++++|
T Consensus 78 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 78 LSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp EESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred CcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 55555554 4444445677777777777766654 456677777777777777777665 5667778888888887
Q ss_pred cCCccch
Q 017542 239 NIESLPT 245 (369)
Q Consensus 239 ~l~~~~~ 245 (369)
.+..+|+
T Consensus 158 ~~~~~~~ 164 (168)
T 2ell_A 158 EDQEAPD 164 (168)
T ss_dssp TSCBCCS
T ss_pred Chhhccc
Confidence 7776664
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.55 E-value=6e-15 Score=115.64 Aligned_cols=124 Identities=24% Similarity=0.288 Sum_probs=85.4
Q ss_pred CCCCeEeecCCCCC-CCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCC-CCccccCCCCCcEEec
Q 017542 135 EGLKQLKLTGCTKL-GSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLV-LPPLLSGLSSLKKLEL 212 (369)
Q Consensus 135 ~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l 212 (369)
+++++|++++|... +.++..+..+++|++|++++|.+..+ ..+..+++|+.|++++|.... +|..+..+++|+.|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 45666666665443 34555556666666666666666655 556667777777777777655 5555566777888888
Q ss_pred cCCCCccCC--CCCCCCCCCCEEEccCCcCCccch----hhccCCcCcEeccc
Q 017542 213 GDCEIMEIP--PDIGCLSSLESLNLSGNNIESLPT----SISQLSRLRWLYLV 259 (369)
Q Consensus 213 ~~~~~~~~~--~~~~~~~~L~~L~l~~~~l~~~~~----~~~~~~~L~~L~l~ 259 (369)
++|.+.+++ ..+..+++|++|++++|.++.++. .+..+++|++|+++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 888777643 556777888888888888776664 56778888888775
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.54 E-value=4.9e-14 Score=115.38 Aligned_cols=128 Identities=21% Similarity=0.215 Sum_probs=106.7
Q ss_pred cEEecCCCCCccccCCccC-CeeEEecCCccCcccCcc--CCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCc
Q 017542 22 IKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPLS--IECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCI 98 (369)
Q Consensus 22 ~~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 98 (369)
+.++++++. ++.+|..+. ++++|++++|.++.++.. +..+++|++|++++|...+..+..+.++++|++|++++|.
T Consensus 11 ~~l~~s~~~-l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRG-LKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSC-CSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCC-cCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 688999888 788887665 999999999999887753 7889999999999987776667788889999999999987
Q ss_pred CCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCC
Q 017542 99 NLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGS 150 (369)
Q Consensus 99 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 150 (369)
.....+..+..+++|++|++++|......+..+..+++|++|++++|.....
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 7766777788899999999998877777777888889999999988765443
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.53 E-value=9.4e-14 Score=113.70 Aligned_cols=125 Identities=18% Similarity=0.190 Sum_probs=102.1
Q ss_pred cEEecCCCCCccccCCccC-CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCC
Q 017542 22 IKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINL 100 (369)
Q Consensus 22 ~~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 100 (369)
++++++++. +..+|..+. +|++|++++|.++.+|..+..+++|++|++++|......+..|.++++|++|++++|...
T Consensus 13 ~~l~~~~~~-l~~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 13 TVVRCSNKG-LKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp TEEECTTSC-CSSCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEcCCCC-CCcCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence 578888887 888887655 999999999999988888888999999999998776665667888999999999998776
Q ss_pred ccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCC
Q 017542 101 ESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTK 147 (369)
Q Consensus 101 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 147 (369)
...+..+..+++|++|++++|......+..+..+++|+.|++++|+.
T Consensus 92 ~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 66667788899999999997765554445677888888888888654
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.49 E-value=1.1e-13 Score=108.29 Aligned_cols=123 Identities=17% Similarity=0.081 Sum_probs=64.2
Q ss_pred CCccEEecCCCCCcc--ccCCccC---CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEe
Q 017542 19 ISSIKIDCYKCVNLR--EFPRISG---NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLD 93 (369)
Q Consensus 19 ~~L~~L~l~~~~~l~--~~~~~~~---~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 93 (369)
++++.|++++|. +. .+|..+. +|++|++++|.++.+ ..+..+++|++|++++|.....+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSR-SNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCB-CBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCc-CChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 456666666665 33 4544332 566666666555555 3455556666666666554444454444556666666
Q ss_pred cCCCcCCcc-CchhhhccCccceeeccccccccccc---hhhhcCCCCCeEeec
Q 017542 94 LSYCINLES-FPEILEKMELLEEINLEEASNIKELP---SSIENLEGLKQLKLT 143 (369)
Q Consensus 94 l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~L~l~ 143 (369)
+++|..... .+..+..+++|++|++++|......+ ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 665543321 22445556666666666554333222 245555555555543
No 125
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.48 E-value=7.8e-15 Score=143.93 Aligned_cols=120 Identities=19% Similarity=0.138 Sum_probs=64.5
Q ss_pred CccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccccccccc
Q 017542 49 CTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELP 128 (369)
Q Consensus 49 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 128 (369)
++.+...+..+..+++|++|+|++|... .++..+..+++|++|+|++|... .+|..+..+++|++|++++|... .+|
T Consensus 210 ~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp 286 (727)
T 4b8c_D 210 ENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLP 286 (727)
T ss_dssp ------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCC
T ss_pred ccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccC
Confidence 3333333445556666666666665433 45544555666666666665443 55666666666666666655533 555
Q ss_pred hhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCC
Q 017542 129 SSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIP 172 (369)
Q Consensus 129 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 172 (369)
..+..+++|++|++++|. ++.+|..++.+++|+.|++++|.+.
T Consensus 287 ~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 287 AELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp SSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred hhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccC
Confidence 566666666666666643 3455555666666666666666655
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.47 E-value=3.5e-14 Score=139.30 Aligned_cols=153 Identities=21% Similarity=0.198 Sum_probs=104.1
Q ss_pred ccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCccccCCC
Q 017542 126 ELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLS 205 (369)
Q Consensus 126 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 205 (369)
..+..+..+++|+.|++++|. +..++..+..+++|++|++++|.+..+|..+..+++|+.|++++|.+..+|..+..++
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~ 293 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCF 293 (727)
T ss_dssp -------CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGT
T ss_pred cChhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCC
Confidence 345566777888888888855 4466766778888888888888888888888888999999999998888888888888
Q ss_pred CCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCC-ccchhhccCC-cCcEecccCCcccccCCCCCcccceeccccc
Q 017542 206 SLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIE-SLPTSISQLS-RLRWLYLVNCVKLQSLPELPLLLVMLGASDC 282 (369)
Q Consensus 206 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~c 282 (369)
+|+.|++++|.+..+|..+..+++|++|+|++|.++ .+|..+.... .+..+++++|..-. ..+..++.|++.++
T Consensus 294 ~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~---~~p~~l~~l~l~~n 369 (727)
T 4b8c_D 294 QLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEI---PLPHERRFIEINTD 369 (727)
T ss_dssp TCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCC---CCCCC---------
T ss_pred CCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccC---cCccccceeEeecc
Confidence 999999999988888888888899999999999888 4445443322 12235666663222 23345666666544
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.47 E-value=2.7e-13 Score=110.90 Aligned_cols=128 Identities=20% Similarity=0.152 Sum_probs=86.3
Q ss_pred eEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccc-cccCCCCCcEEecCCCcCCccCchhhhccCccceeecccc
Q 017542 43 VELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLST-SICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEA 121 (369)
Q Consensus 43 ~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 121 (369)
++++++++.++.+|..+. ++|++|++++|......+. .+..+++|++|++++|......+..+..+++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 567888888888886543 3788888888755433332 3677888888888887766666777778888888888877
Q ss_pred ccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCC
Q 017542 122 SNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIP 172 (369)
Q Consensus 122 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 172 (369)
......+..+..+++|++|++++|...+..+..+..+++|++|++++|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 655555555667777777777776554444555555555555555555543
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.46 E-value=6.5e-14 Score=112.97 Aligned_cols=126 Identities=20% Similarity=0.205 Sum_probs=69.7
Q ss_pred cCCCCCeEeecCCCCCCCCCcccCCC-cchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCcc-ccCCCCCcEE
Q 017542 133 NLEGLKQLKLTGCTKLGSLPESLGNL-KSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPL-LSGLSSLKKL 210 (369)
Q Consensus 133 ~l~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L 210 (369)
.+.+|++|++++|.. ..++. +..+ ++|+.|++++|.+..+ ..+..+++|+.|++++|....++.. +..+++|+.|
T Consensus 17 ~~~~L~~L~l~~n~l-~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 17 NAVRDRELDLRGYKI-PVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp CTTSCEEEECTTSCC-CSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CcCCceEEEeeCCCC-chhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 344555555555432 23332 2222 2555555555555544 3455556666666666665555432 2556666666
Q ss_pred eccCCCCccCCC--CCCCCCCCCEEEccCCcCCccchh----hccCCcCcEecccCC
Q 017542 211 ELGDCEIMEIPP--DIGCLSSLESLNLSGNNIESLPTS----ISQLSRLRWLYLVNC 261 (369)
Q Consensus 211 ~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~----~~~~~~L~~L~l~~~ 261 (369)
++++|.+..++. .+..+++|++|++++|.++.+|.. +..+++|+.|++++|
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 666666655544 455566666666666666655543 566666666666665
No 129
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.44 E-value=2e-13 Score=121.57 Aligned_cols=86 Identities=16% Similarity=0.274 Sum_probs=63.8
Q ss_pred CCCCcEEeecCCCCCCCCc-cccCCCCCcEEeccCCCCccCCC-CCCCCCCCC-EEEccCCcCCccc-hhhccCCcCcEe
Q 017542 181 LNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIMEIPP-DIGCLSSLE-SLNLSGNNIESLP-TSISQLSRLRWL 256 (369)
Q Consensus 181 ~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~-~L~l~~~~l~~~~-~~~~~~~~L~~L 256 (369)
+++|+.+++.+|....++. .|.++++|+.+++.++ +..++. .+..+++|+ .+++.+ .++.++ .++.+|++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 6788888888887777765 6778888888888887 555443 467788888 888887 677665 567788888888
Q ss_pred cccCCcccccCCC
Q 017542 257 YLVNCVKLQSLPE 269 (369)
Q Consensus 257 ~l~~~~~l~~~~~ 269 (369)
++.++ .++.++.
T Consensus 303 ~l~~n-~i~~I~~ 314 (329)
T 3sb4_A 303 LATGD-KITTLGD 314 (329)
T ss_dssp EECSS-CCCEECT
T ss_pred EeCCC-ccCccch
Confidence 88766 5555543
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.43 E-value=5.5e-13 Score=107.52 Aligned_cols=130 Identities=12% Similarity=0.083 Sum_probs=94.3
Q ss_pred CCCCCCCCCccEEecCCCCCccccCCccC---CeeEEecCCccCcccCccCCCCCCCCEEeCcCCccccccc-ccccCCC
Q 017542 12 FPQNIHFISSIKIDCYKCVNLREFPRISG---NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLS-TSICKLK 87 (369)
Q Consensus 12 ~p~~~~~~~L~~L~l~~~~~l~~~~~~~~---~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~ 87 (369)
.|....+++|+.|++++|. +..++.... +|++|++++|.++.+ ..+..+++|++|++++|... .++ ..+..++
T Consensus 12 ~~~~~~~~~L~~L~l~~n~-l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~ 88 (176)
T 1a9n_A 12 AAQYTNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALP 88 (176)
T ss_dssp SCEEECTTSCEEEECTTSC-CCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCC-EECSCHHHHCT
T ss_pred HHhcCCcCCceEEEeeCCC-CchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCccc-ccCcchhhcCC
Confidence 3444477888899998887 667664332 788888888888877 45788888888888887654 444 3347788
Q ss_pred CCcEEecCCCcCCccCch--hhhccCccceeeccccccccccch----hhhcCCCCCeEeecCCC
Q 017542 88 SLRSLDLSYCINLESFPE--ILEKMELLEEINLEEASNIKELPS----SIENLEGLKQLKLTGCT 146 (369)
Q Consensus 88 ~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~~~ 146 (369)
+|++|++++|.. ..++. .+..+++|++|++++|... ..+. .+..+++|+.|+++++.
T Consensus 89 ~L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 89 DLTELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp TCCEEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCEEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCC
Confidence 888888888755 44554 6778888888888877654 3444 36778888888877653
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.42 E-value=1.4e-12 Score=106.73 Aligned_cols=101 Identities=17% Similarity=0.142 Sum_probs=60.9
Q ss_pred eEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccccc
Q 017542 43 VELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEAS 122 (369)
Q Consensus 43 ~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 122 (369)
+.++++++.++.+|..+. ++|++|++++|.. +.+|..+..+++|++|++++|......+..+..+++|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i-~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCC-CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcC-chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 456677777777765432 5677777777543 3555566667777777777765555445556666666666666555
Q ss_pred cccccchhhhcCCCCCeEeecCCC
Q 017542 123 NIKELPSSIENLEGLKQLKLTGCT 146 (369)
Q Consensus 123 ~~~~~~~~~~~l~~L~~L~l~~~~ 146 (369)
.....+..+..+++|+.|++++|.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~ 113 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGND 113 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEeCHHHhCCCCCCCEEECCCCC
Confidence 444444445555555555555543
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.41 E-value=3.4e-12 Score=102.93 Aligned_cols=127 Identities=18% Similarity=0.154 Sum_probs=93.2
Q ss_pred ccEEecCCCCCccccCCccC-CeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCc
Q 017542 21 SIKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCI 98 (369)
Q Consensus 21 L~~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 98 (369)
.+.++++++. +..+|.... +|++|+++++.++.++. .+..+++|++|++++|......+..+..+++|++|++++|.
T Consensus 9 ~~~l~~~~~~-l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 9 GTEIRCNSKG-LTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TTEEECCSSC-CSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEecCCC-CccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 4678888777 777776554 88888888888887765 45778888888888876554444456778888888888876
Q ss_pred CCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCC
Q 017542 99 NLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKL 148 (369)
Q Consensus 99 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 148 (369)
.....+..+..+++|++|++++|......+..+..+++|++|++++|...
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 66555556778888888888877654433344577888888888886543
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.39 E-value=7e-13 Score=118.06 Aligned_cols=230 Identities=15% Similarity=0.069 Sum_probs=128.7
Q ss_pred CeeEEecCCccCc-ccCccCCC-CCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhc--------c
Q 017542 41 NVVELNLMCTPIE-EVPLSIEC-LPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEK--------M 110 (369)
Q Consensus 41 ~L~~L~l~~~~~~-~l~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--------l 110 (369)
+++.|.++++--. ++. .+.. +++|++|||++|........ -+.++.++.+.+..+ ......|.. |
T Consensus 26 ~l~~L~l~g~i~~~~~~-~l~~~l~~L~~LdLs~n~i~~~~~~-~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~ 100 (329)
T 3sb4_A 26 SITHLTLTGKLNAEDFR-HLRDEFPSLKVLDISNAEIKMYSGK-AGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGK 100 (329)
T ss_dssp HCSEEEEEEEECHHHHH-HHHHSCTTCCEEEEEEEEECCEEES-SSSSGGGCCEEECTT---EECTTTTEEEETTEEEEC
T ss_pred ceeEEEEeccccHHHHH-HHHHhhccCeEEecCcceeEEecCc-ccccccccccccccc---ccCHHHhccccccccccc
Confidence 7888888654211 221 1222 78999999999765511000 111222333443332 122344556 7
Q ss_pred CccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCccc----CCCC-CcccccCCCCc
Q 017542 111 ELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLA----IPQA-PSSIVDLNKLE 185 (369)
Q Consensus 111 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~----~~~~-~~~l~~~~~L~ 185 (369)
++|+++++.+ ........+|.++++|+.+++.++......+..+..+.++..+...... ...+ ...+..+..|+
T Consensus 101 ~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~ 179 (329)
T 3sb4_A 101 QTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLE 179 (329)
T ss_dssp TTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCE
T ss_pred CCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccc
Confidence 8888888875 3333334567778888888887755444344456666656555544321 1111 12334444454
Q ss_pred -EEeec-------------------------CCCCCCCC-ccccCCCCCcEEeccCCCCccCCCC-CCCCCCCCEEEccC
Q 017542 186 -TLSLF-------------------------ECRGLVLP-PLLSGLSSLKKLELGDCEIMEIPPD-IGCLSSLESLNLSG 237 (369)
Q Consensus 186 -~L~l~-------------------------~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~ 237 (369)
.+.+. +.-..... .....+++|+.+++++|.+..++.. +..+.+|+++++.+
T Consensus 180 ~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ 259 (329)
T 3sb4_A 180 TTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPH 259 (329)
T ss_dssp EEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCT
T ss_pred eeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCc
Confidence 23332 21100000 0011367899999998888886654 67788999999988
Q ss_pred CcCCccc-hhhccCCcCc-EecccCCcccccCCC----CCcccceecc
Q 017542 238 NNIESLP-TSISQLSRLR-WLYLVNCVKLQSLPE----LPLLLVMLGA 279 (369)
Q Consensus 238 ~~l~~~~-~~~~~~~~L~-~L~l~~~~~l~~~~~----~~~~L~~L~l 279 (369)
| ++.++ .++.++++|+ .+++.+ .++.++. ...+|+.+++
T Consensus 260 n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l 304 (329)
T 3sb4_A 260 N-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLA 304 (329)
T ss_dssp T-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEE
T ss_pred c-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEe
Confidence 7 77666 4568888898 888876 5666553 1244555554
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.38 E-value=4e-12 Score=102.48 Aligned_cols=129 Identities=19% Similarity=0.114 Sum_probs=73.9
Q ss_pred eeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeecccc
Q 017542 42 VVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEA 121 (369)
Q Consensus 42 L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 121 (369)
.+.+++++++++.+|..+ .++|++|++++|......+..+..+++|++|++++|......+..+..+++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 356677777777777433 367778888776654433344566777777777776554444445566777777777765
Q ss_pred ccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCC
Q 017542 122 SNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIP 172 (369)
Q Consensus 122 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 172 (369)
......+..+..+++|++|++++|......+..+..+++|++|++++|.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 544333334555666666666664332222222344455555555554443
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.37 E-value=7.2e-11 Score=107.55 Aligned_cols=229 Identities=10% Similarity=0.093 Sum_probs=137.0
Q ss_pred CCccEEecCCCCCccccCCc-cC--CeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCcccccccccccCCCCCcEEec
Q 017542 19 ISSIKIDCYKCVNLREFPRI-SG--NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDL 94 (369)
Q Consensus 19 ~~L~~L~l~~~~~l~~~~~~-~~--~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 94 (369)
..++.+.+-+. ++.++.. +. +|+.+.+..+ ++.+.. .|.+ .+|+.+.+.. .....-...|.+|.+|+.+++
T Consensus 113 ~~l~~i~ip~~--i~~I~~~aF~~~~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPNS--VKSIPKDAFRNSQIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCTT--CCEECTTTTTTCCCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECCc--cCEehHhhcccCCccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 44555555442 4444421 22 6777777544 555554 3444 3677777765 222222345677777777777
Q ss_pred CCCcCCccCchhhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCC-cccCCCcchhhhccCcccCCC
Q 017542 95 SYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLP-ESLGNLKSLERLHAGLLAIPQ 173 (369)
Q Consensus 95 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~ 173 (369)
..+.........+. +.+|+.+.+.. ........+|.++++|+.+.+..+ +..++ ..+.. .+|+.+.+. +.+..
T Consensus 188 ~~n~l~~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp-~~i~~ 261 (401)
T 4fdw_A 188 SKTKITKLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLP-NGVTN 261 (401)
T ss_dssp TTSCCSEECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEE-TTCCE
T ss_pred CCCcceEechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeC-CCccE
Confidence 76544333333444 57777777763 222233456777777777777652 33332 23444 567777763 33443
Q ss_pred C-CcccccCCCCcEEeecCCCCC-----CCC-ccccCCCCCcEEeccCCCCccCC-CCCCCCCCCCEEEccCCcCCccc-
Q 017542 174 A-PSSIVDLNKLETLSLFECRGL-----VLP-PLLSGLSSLKKLELGDCEIMEIP-PDIGCLSSLESLNLSGNNIESLP- 244 (369)
Q Consensus 174 ~-~~~l~~~~~L~~L~l~~~~~~-----~~~-~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~- 244 (369)
+ ...|..|++|+.+.+.++... .++ ..|.+|++|+.+.+.+ .+..+. ..+..|.+|+.+.+..+ ++.+.
T Consensus 262 I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~ 339 (401)
T 4fdw_A 262 IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINF 339 (401)
T ss_dssp ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECT
T ss_pred EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcH
Confidence 3 346777888888888776543 233 4677888888888874 355543 34667788888888554 66554
Q ss_pred hhhccCCcCcEecccCC
Q 017542 245 TSISQLSRLRWLYLVNC 261 (369)
Q Consensus 245 ~~~~~~~~L~~L~l~~~ 261 (369)
.++..+ +|+.+++.++
T Consensus 340 ~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 340 SAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp TSSSSS-CCCEEEECCS
T ss_pred HhCCCC-CCCEEEEcCC
Confidence 456777 8888888877
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.33 E-value=8.4e-15 Score=120.63 Aligned_cols=80 Identities=24% Similarity=0.211 Sum_probs=37.5
Q ss_pred hhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCC--CCCCCCCCCEEEccCC
Q 017542 161 LERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPP--DIGCLSSLESLNLSGN 238 (369)
Q Consensus 161 L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~ 238 (369)
|++|++++|.+..+|..+..+++|+.|++++|....++ .+..+++|+.|++++|.+..++. .+..+++|++|++++|
T Consensus 72 L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 72 LRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp CCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred CCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence 33333333333333333333444555555555444433 23444555555555555554322 3445556666666666
Q ss_pred cCC
Q 017542 239 NIE 241 (369)
Q Consensus 239 ~l~ 241 (369)
.++
T Consensus 151 ~l~ 153 (198)
T 1ds9_A 151 PLY 153 (198)
T ss_dssp HHH
T ss_pred ccc
Confidence 554
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.30 E-value=3.7e-10 Score=102.87 Aligned_cols=207 Identities=12% Similarity=0.112 Sum_probs=102.1
Q ss_pred CeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCccccccc-ccccCCCCCcEEecCCCcCCccCchhhhccCccceeec
Q 017542 41 NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLS-TSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINL 118 (369)
Q Consensus 41 ~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 118 (369)
.++.+.+.. .++.++. .|.++ +|+.+.+..+ +..++ ..|.+ .+|+.+.+.. .....-...|..|++|+.+++
T Consensus 114 ~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 114 GYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG--LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT--CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CccEEEECC-ccCEehHhhcccC-CccEEEeCCC--ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 444444432 2344433 34443 5666666542 33332 23444 3566666654 233333355666666666666
Q ss_pred cccccccccchhhhcCCCCCeEeecCCCCCCCC-CcccCCCcchhhhccCcccCCCCCc-ccccCCCCcEEeecCCCCCC
Q 017542 119 EEASNIKELPSSIENLEGLKQLKLTGCTKLGSL-PESLGNLKSLERLHAGLLAIPQAPS-SIVDLNKLETLSLFECRGLV 196 (369)
Q Consensus 119 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~ 196 (369)
.++........+|. +.+|+.+.+.. . +..+ ...+..+++|+.+.+..+ +..+.. .|.. .+|+.+.+..+ ...
T Consensus 188 ~~n~l~~I~~~aF~-~~~L~~l~lp~-~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~~-i~~ 261 (401)
T 4fdw_A 188 SKTKITKLPASTFV-YAGIEEVLLPV-T-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPNG-VTN 261 (401)
T ss_dssp TTSCCSEECTTTTT-TCCCSEEECCT-T-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEETT-CCE
T ss_pred CCCcceEechhhEe-ecccCEEEeCC-c-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCCC-ccE
Confidence 64432222222333 45666666653 2 2222 234556666666666543 232222 2333 56666666332 223
Q ss_pred C-CccccCCCCCcEEeccCCCCc-----cC-CCCCCCCCCCCEEEccCCcCCccc-hhhccCCcCcEecccC
Q 017542 197 L-PPLLSGLSSLKKLELGDCEIM-----EI-PPDIGCLSSLESLNLSGNNIESLP-TSISQLSRLRWLYLVN 260 (369)
Q Consensus 197 ~-~~~~~~~~~L~~L~l~~~~~~-----~~-~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~ 260 (369)
+ ...|.++++|+.+.+.++... .+ ...+..|++|+.+++.+ .++.++ ..+.+|++|+.+.+..
T Consensus 262 I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~ 332 (401)
T 4fdw_A 262 IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPA 332 (401)
T ss_dssp ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECT
T ss_pred EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECc
Confidence 3 235566666666666665543 22 22355666666666663 355444 3445566666666643
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.27 E-value=1.9e-14 Score=118.48 Aligned_cols=110 Identities=18% Similarity=0.214 Sum_probs=59.0
Q ss_pred hhhccCccceeeccccccccccchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcccccCCCCc
Q 017542 106 ILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLE 185 (369)
Q Consensus 106 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~ 185 (369)
.+..+++|++|++++|.. ..+| .+..+++|+.|++++|. +..+|..+..+++|++|++++|.+..++ .+..+++|+
T Consensus 43 ~~~~l~~L~~L~ls~n~l-~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~ 118 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNI-EKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLR 118 (198)
T ss_dssp HHHHTTTCSEEECSEEEE-SCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSS
T ss_pred HHhcCCCCCEEECCCCCC-cccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCC
Confidence 444444444444443332 2233 34444455555554432 2233433344455555555555555443 455566777
Q ss_pred EEeecCCCCCCCCc--cccCCCCCcEEeccCCCCcc
Q 017542 186 TLSLFECRGLVLPP--LLSGLSSLKKLELGDCEIME 219 (369)
Q Consensus 186 ~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~ 219 (369)
.|++++|....++. .+..+++|+.|++++|.+..
T Consensus 119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred EEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 77777776555443 56677778888888777655
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.23 E-value=5.5e-11 Score=95.07 Aligned_cols=102 Identities=19% Similarity=0.134 Sum_probs=65.3
Q ss_pred ccEEecCCCCCccccCCccC-CeeEEecCCccCccc-CccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCc
Q 017542 21 SIKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEV-PLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCI 98 (369)
Q Consensus 21 L~~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 98 (369)
.+.++++++. +..+|..+. +|++|++++|.++.+ +..+..+++|++|++++|......+..+..+++|++|++++|.
T Consensus 11 ~~~l~~s~n~-l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 11 GTTVDCSGKS-LASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TTEEECTTSC-CSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEeCCCC-cCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 4567777766 666775544 777777777777766 3456677777777777765443333445667777777777765
Q ss_pred CCccCchhhhccCccceeecccccc
Q 017542 99 NLESFPEILEKMELLEEINLEEASN 123 (369)
Q Consensus 99 ~~~~~~~~~~~l~~L~~L~l~~~~~ 123 (369)
.....+..+..+++|++|++++|+.
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 5444444566677777777766543
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.19 E-value=1.1e-10 Score=93.71 Aligned_cols=101 Identities=20% Similarity=0.145 Sum_probs=63.1
Q ss_pred cEEecCCCCCccccCCccC-CeeEEecCCccCccc-CccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcC
Q 017542 22 IKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEV-PLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCIN 99 (369)
Q Consensus 22 ~~L~l~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 99 (369)
+.++++++. +..+|..+. +|++|++++|.++.+ +..+..+++|++|++++|......+..+.++++|++|++++|..
T Consensus 15 ~~l~~~~n~-l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 15 TLVNCQNIR-LASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp SEEECCSSC-CSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cEEEeCCCC-CCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence 567777766 677776544 777777777777765 34566777777777777644433233346677777777777654
Q ss_pred CccCchhhhccCccceeecccccc
Q 017542 100 LESFPEILEKMELLEEINLEEASN 123 (369)
Q Consensus 100 ~~~~~~~~~~l~~L~~L~l~~~~~ 123 (369)
....+..+..+++|++|++++|+.
T Consensus 94 ~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 94 KSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCB
T ss_pred ceeCHHHhccccCCCEEEeCCCCc
Confidence 433334466666666666666543
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.19 E-value=1.1e-10 Score=93.25 Aligned_cols=106 Identities=16% Similarity=0.121 Sum_probs=84.3
Q ss_pred CeeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeeccc
Q 017542 41 NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEE 120 (369)
Q Consensus 41 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 120 (369)
..+.++++++.++.+|..+ .++|++|++++|......+..+.++++|++|++++|......+..+..+++|++|++++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 4567899999999988755 37899999999877666677788899999999999876655556678899999999998
Q ss_pred cccccccchhhhcCCCCCeEeecCCCCC
Q 017542 121 ASNIKELPSSIENLEGLKQLKLTGCTKL 148 (369)
Q Consensus 121 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 148 (369)
|......+..+..+++|++|++++|...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 7655544556888889999999886543
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.17 E-value=1.7e-10 Score=92.49 Aligned_cols=104 Identities=15% Similarity=0.125 Sum_probs=80.4
Q ss_pred eeEEecCCccCcccCccCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCccCchhhhccCccceeecccc
Q 017542 42 VVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEA 121 (369)
Q Consensus 42 L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 121 (369)
-+.++++++.++.+|..+. ++|++|++++|......+..+.++++|++|++++|......+..+..+++|++|++++|
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 3678889999998887554 78999999998766666777888999999999997655544455688899999999877
Q ss_pred ccccccchhhhcCCCCCeEeecCCCC
Q 017542 122 SNIKELPSSIENLEGLKQLKLTGCTK 147 (369)
Q Consensus 122 ~~~~~~~~~~~~l~~L~~L~l~~~~~ 147 (369)
......+..+..+++|++|++++|..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred ccceeCHHHhccccCCCEEEeCCCCc
Confidence 65544444577888888888888653
No 143
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.02 E-value=2.2e-09 Score=97.86 Aligned_cols=39 Identities=23% Similarity=0.210 Sum_probs=19.6
Q ss_pred hhhhccCccceeeccccccccccchhhhcCCCCCeEeecC
Q 017542 105 EILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTG 144 (369)
Q Consensus 105 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 144 (369)
..+..|++|+.+.+.++ .......+|.++.+|+.+.+..
T Consensus 156 ~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~ 194 (394)
T 4fs7_A 156 EAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPR 194 (394)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCT
T ss_pred hhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCC
Confidence 34555666666666522 1222233455566666665543
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.98 E-value=1.2e-11 Score=111.62 Aligned_cols=60 Identities=20% Similarity=0.231 Sum_probs=28.7
Q ss_pred cCCCCCcEEeccCCCCcc-----CCCCCCCCCCCCEEEccCCcCCc-----cchhhccCCcCcEecccCC
Q 017542 202 SGLSSLKKLELGDCEIME-----IPPDIGCLSSLESLNLSGNNIES-----LPTSISQLSRLRWLYLVNC 261 (369)
Q Consensus 202 ~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~l~~-----~~~~~~~~~~L~~L~l~~~ 261 (369)
...++|++|++++|.+.+ +...+...++|++|++++|.+++ +...+..+++|++|++++|
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence 344455555555555443 12223334455555555555542 2223334455555555555
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.96 E-value=2.3e-11 Score=109.71 Aligned_cols=84 Identities=18% Similarity=0.101 Sum_probs=54.0
Q ss_pred cchhhhccCcccCCC-----CCcccccCCCCcEEeecCCCCCC-----CCccccCCCCCcEEeccCCCCcc-----CCCC
Q 017542 159 KSLERLHAGLLAIPQ-----APSSIVDLNKLETLSLFECRGLV-----LPPLLSGLSSLKKLELGDCEIME-----IPPD 223 (369)
Q Consensus 159 ~~L~~L~l~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~-----~~~~ 223 (369)
++|++|++++|.++. ++..+...++|++|++++|.... +...+...++|+.|++++|.+.+ +...
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~ 234 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA 234 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence 445555555554431 22334556778888888877432 23445666788888888888865 2233
Q ss_pred CCCCCCCCEEEccCCcCCc
Q 017542 224 IGCLSSLESLNLSGNNIES 242 (369)
Q Consensus 224 ~~~~~~L~~L~l~~~~l~~ 242 (369)
+...++|++|++++|.+++
T Consensus 235 L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 235 AREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHCSSCCEEECTTSSCCH
T ss_pred HHhCCCCCEEeccCCCCCH
Confidence 4456789999999998873
No 146
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.89 E-value=1.3e-07 Score=86.00 Aligned_cols=102 Identities=18% Similarity=0.094 Sum_probs=49.3
Q ss_pred cCCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCC-CCCCCCCCCCEE
Q 017542 155 LGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIP-PDIGCLSSLESL 233 (369)
Q Consensus 155 ~~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L 233 (369)
+..+..++.+.+..+...-....+..+..++......... ....+..+.+|+.+.+..+ +..+. ..+..+.+|+.+
T Consensus 249 f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i--~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i 325 (394)
T 4fs7_A 249 FYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIV--PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSI 325 (394)
T ss_dssp TTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEE--CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEE
T ss_pred ccccccceeEEcCCCcceeeccccccccccceeccCceee--ccccccccccccccccccc-cceechhhhcCCCCCCEE
Confidence 3444555555544433222223344455555554433221 1123455666666666543 33332 235556666666
Q ss_pred EccCCcCCccc-hhhccCCcCcEecccC
Q 017542 234 NLSGNNIESLP-TSISQLSRLRWLYLVN 260 (369)
Q Consensus 234 ~l~~~~l~~~~-~~~~~~~~L~~L~l~~ 260 (369)
++..+ ++.+. .++.+|.+|+.+++..
T Consensus 326 ~lp~~-v~~I~~~aF~~c~~L~~i~lp~ 352 (394)
T 4fs7_A 326 DLPYL-VEEIGKRSFRGCTSLSNINFPL 352 (394)
T ss_dssp CCCTT-CCEECTTTTTTCTTCCEECCCT
T ss_pred EeCCc-ccEEhHHhccCCCCCCEEEECc
Confidence 66533 55443 3455666666666643
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.87 E-value=9.9e-09 Score=91.82 Aligned_cols=100 Identities=16% Similarity=0.146 Sum_probs=67.0
Q ss_pred EEecCCCCCccccCCccC---CeeEEecCC-ccCcccCc-cCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCCC
Q 017542 23 KIDCYKCVNLREFPRISG---NVVELNLMC-TPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYC 97 (369)
Q Consensus 23 ~L~l~~~~~l~~~~~~~~---~L~~L~l~~-~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 97 (369)
.++++++..+..+|. ++ +|++|++++ |.++.++. .+..+++|++|+|++|...+..+..|.++++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 456766623777777 54 578888874 77777663 5777788888888877655555556777788888888876
Q ss_pred cCCccCchhhhccCccceeeccccccc
Q 017542 98 INLESFPEILEKMELLEEINLEEASNI 124 (369)
Q Consensus 98 ~~~~~~~~~~~~l~~L~~L~l~~~~~~ 124 (369)
......+..+..++ |++|++.+|...
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 55544444444444 777777766543
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.85 E-value=7.8e-09 Score=92.48 Aligned_cols=102 Identities=22% Similarity=0.194 Sum_probs=71.6
Q ss_pred eEeecCCCCCCCCCcccCCCcchhhhccCc-ccCCCCC-cccccCCCCcEEeecCCCCCCCCc-cccCCCCCcEEeccCC
Q 017542 139 QLKLTGCTKLGSLPESLGNLKSLERLHAGL-LAIPQAP-SSIVDLNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDC 215 (369)
Q Consensus 139 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~ 215 (369)
.++.++++.+..+|. +..+++|++|++++ |.+..++ ..|..+++|+.|++++|.+..++. .|.++++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 455555435666777 77777888888875 7777666 457777888888888887665543 5677788888888888
Q ss_pred CCccCCCCCCCCCCCCEEEccCCcCC
Q 017542 216 EIMEIPPDIGCLSSLESLNLSGNNIE 241 (369)
Q Consensus 216 ~~~~~~~~~~~~~~L~~L~l~~~~l~ 241 (369)
.+..++........|++|++.+|.+.
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred ccceeCHHHcccCCceEEEeeCCCcc
Confidence 88776655433334888888887766
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.81 E-value=5.8e-07 Score=81.77 Aligned_cols=81 Identities=14% Similarity=0.205 Sum_probs=43.9
Q ss_pred ccccCCCCcEEeecCCCCCCCCccccCCCCCcEEeccCCCCccCCC-CCCCCCCCCEEEccCCcCCccc-hhhccCCcCc
Q 017542 177 SIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPP-DIGCLSSLESLNLSGNNIESLP-TSISQLSRLR 254 (369)
Q Consensus 177 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~ 254 (369)
.|..+..|+.+.+......--...+.++++|+.+.+.. .+..++. .+.+|.+|+.++|..+ ++.+. .++.+|.+|+
T Consensus 260 aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE 337 (394)
T ss_dssp TTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred eeeecccccEEecccccceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence 34556666666665443222223455666677666642 2333332 3555666777766543 44443 3456666676
Q ss_pred Eeccc
Q 017542 255 WLYLV 259 (369)
Q Consensus 255 ~L~l~ 259 (369)
.+.+.
T Consensus 338 ~i~ip 342 (394)
T 4gt6_A 338 RIAIP 342 (394)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 66664
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.76 E-value=8.4e-09 Score=92.31 Aligned_cols=132 Identities=23% Similarity=0.392 Sum_probs=72.7
Q ss_pred cchhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCC-Cccc--ccCCCCcEEeecCCC---CC-----
Q 017542 127 LPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQA-PSSI--VDLNKLETLSLFECR---GL----- 195 (369)
Q Consensus 127 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~l--~~~~~L~~L~l~~~~---~~----- 195 (369)
+...+..+++|++|.++++.... ++. + .+++|++|++..+.+..- ...+ ..+++|++|+++.+. ..
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~-l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLS-IGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCB-CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCce-ecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence 33445566677777776653221 222 2 256666666665554311 1112 246777777775321 11
Q ss_pred CCCccc--cCCCCCcEEeccCCCCcc-CCC---CCCCCCCCCEEEccCCcCCc-----cchhhccCCcCcEecccCC
Q 017542 196 VLPPLL--SGLSSLKKLELGDCEIME-IPP---DIGCLSSLESLNLSGNNIES-----LPTSISQLSRLRWLYLVNC 261 (369)
Q Consensus 196 ~~~~~~--~~~~~L~~L~l~~~~~~~-~~~---~~~~~~~L~~L~l~~~~l~~-----~~~~~~~~~~L~~L~l~~~ 261 (369)
.+...+ ..+++|+.|.+.+|.+.. ... ....+++|++|+|+.|.+.+ ++..+..+++|+.|++++|
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 111112 246788888888777654 100 11346778888888887763 3334456778888888777
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.71 E-value=1.6e-06 Score=78.84 Aligned_cols=60 Identities=13% Similarity=0.185 Sum_probs=36.3
Q ss_pred cccCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEccCCcCCccc-hhhccCCcCcEecccC
Q 017542 200 LLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLP-TSISQLSRLRWLYLVN 260 (369)
Q Consensus 200 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~ 260 (369)
.|..+..|+.+.+......--...+..++.|+.+.+. +.++.++ ..+.+|.+|+.+++..
T Consensus 260 aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~ 320 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPE 320 (394)
T ss_dssp TTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCT
T ss_pred eeeecccccEEecccccceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCC
Confidence 4566677777777554332223345667777777775 3455554 3456677777777754
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.64 E-value=6.2e-09 Score=93.16 Aligned_cols=81 Identities=10% Similarity=0.151 Sum_probs=53.5
Q ss_pred cCCCCcEEeecCCCCCC-CCc---cccCCCCCcEEeccCCCCcc-----CCCCCCCCCCCCEEEccCCcCCcc-chhhcc
Q 017542 180 DLNKLETLSLFECRGLV-LPP---LLSGLSSLKKLELGDCEIME-----IPPDIGCLSSLESLNLSGNNIESL-PTSISQ 249 (369)
Q Consensus 180 ~~~~L~~L~l~~~~~~~-~~~---~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~ 249 (369)
.+++|+.|++.+|.... ... ....+++|++|+++.|.+.+ +...+..+++|+.|++++|.+++- -..+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 46889999998887432 111 11346889999999998876 334445678999999999987732 222222
Q ss_pred -CCcCcEecccCCc
Q 017542 250 -LSRLRWLYLVNCV 262 (369)
Q Consensus 250 -~~~L~~L~l~~~~ 262 (369)
+ ...++++.+.
T Consensus 330 al--g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL--PMKIDVSDSQ 341 (362)
T ss_dssp HC--CSEEECCSBC
T ss_pred Hc--CCEEEecCCc
Confidence 2 3567777664
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.60 E-value=7.2e-06 Score=74.04 Aligned_cols=103 Identities=16% Similarity=0.170 Sum_probs=57.2
Q ss_pred CCCcchhhhccCcccCCCCCcccccCCCCcEEeecCCCCCCC-CccccCCCCCcEEeccCCCCccCC-CCCCCCCCCCEE
Q 017542 156 GNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVL-PPLLSGLSSLKKLELGDCEIMEIP-PDIGCLSSLESL 233 (369)
Q Consensus 156 ~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L 233 (369)
..+.+++.+.+..+-..-....+..+..|+.+.+..+- ..+ ...+..+.+|+.+.+..+ +..++ ..+..+.+|+.+
T Consensus 214 ~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~v-~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i 291 (379)
T 4h09_A 214 SYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKNV-TSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKV 291 (379)
T ss_dssp TTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTTC-CEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEE
T ss_pred ccccccceeeeccceeEEccccccCCccceEEEcCCCc-cEeCccccceeehhcccccccc-ceeccccccccccccccc
Confidence 33444544444332111112345556677777765442 222 234566677777777543 33332 335667777777
Q ss_pred EccCCcCCccc-hhhccCCcCcEecccC
Q 017542 234 NLSGNNIESLP-TSISQLSRLRWLYLVN 260 (369)
Q Consensus 234 ~l~~~~l~~~~-~~~~~~~~L~~L~l~~ 260 (369)
.+.++.++.++ ..+.+|.+|+.+.+..
T Consensus 292 ~l~~~~i~~I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 292 VMDNSAIETLEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp EECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred cccccccceehhhhhcCCCCCCEEEcCc
Confidence 77777777665 4556777777777743
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.53 E-value=6.9e-09 Score=82.00 Aligned_cols=23 Identities=13% Similarity=0.092 Sum_probs=15.5
Q ss_pred cccCCCCCcEEEecCccCcchhh
Q 017542 313 RLSKHMSPVQLIFANCLKLNESI 335 (369)
Q Consensus 313 ~~~~~~~~~~~~~~~c~~l~~~~ 335 (369)
.+.....+..+.+++|+++++..
T Consensus 134 ~L~~~~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 134 ALHHFRNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp HGGGCTTCCEEEEESCTTCCCHH
T ss_pred HHhcCCCCCEEECCCCCCCCchH
Confidence 33334445578888999998754
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.52 E-value=9.8e-06 Score=73.16 Aligned_cols=247 Identities=13% Similarity=0.110 Sum_probs=142.3
Q ss_pred CccCCCCC--CCCCccEEecCCCCCccccCCc-cC--CeeEEecCCccCcccCccCCCCCCCCEEeCcCCccccccc-cc
Q 017542 9 LRCFPQNI--HFISSIKIDCYKCVNLREFPRI-SG--NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLS-TS 82 (369)
Q Consensus 9 l~~~p~~~--~~~~L~~L~l~~~~~l~~~~~~-~~--~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~~ 82 (369)
+++++... .|.+|+.+++..+ +..+.+. +. .|+.+.+.. .++.+........+|+.+.+..+ ...+. ..
T Consensus 57 vt~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF~~c~l~~i~~~~-~l~~I~~~aF~~~~L~~i~lp~~--~~~i~~~~ 131 (379)
T 4h09_A 57 ITSIGEANFNSCYNMTKVTVAST--VTSIGDGAFADTKLQSYTGME-RVKKFGDYVFQGTDLDDFEFPGA--TTEIGNYI 131 (379)
T ss_dssp EEEECTTTTTTCTTCCEEEECTT--CCEECTTTTTTCCCCEEEECT-TCCEECTTTTTTCCCSEEECCTT--CCEECTTT
T ss_pred ccChHHHHhhCCCCCCEEEeCCc--ceEechhhhcCCCCceEECCc-eeeEeccceeccCCcccccCCCc--cccccccc
Confidence 44555543 7889999999643 5666542 22 677776643 35555543333347888888653 12222 22
Q ss_pred ccCCCCCcEEecCCCcCCccCchhhhccCccceeecccccc-----------------------------------cccc
Q 017542 83 ICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASN-----------------------------------IKEL 127 (369)
Q Consensus 83 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-----------------------------------~~~~ 127 (369)
+.. .+|+.+.+..+ ....-...+..+.+++.+.+..... ....
T Consensus 132 F~~-~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 209 (379)
T 4h09_A 132 FYN-SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKTVT 209 (379)
T ss_dssp TTT-CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCEEC
T ss_pred ccc-ceeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccceeEEe
Confidence 222 23444444331 1111222333344444333321110 1111
Q ss_pred chhhhcCCCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCC-CcccccCCCCcEEeecCCCCCCCC-ccccCCC
Q 017542 128 PSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQA-PSSIVDLNKLETLSLFECRGLVLP-PLLSGLS 205 (369)
Q Consensus 128 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~ 205 (369)
...+..+.+++.+.+... ........+..+..|+.+.+..+ +..+ ...+..+.+|+.+.+... ...++ ..+..+.
T Consensus 210 ~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~ 286 (379)
T 4h09_A 210 AYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCS 286 (379)
T ss_dssp TTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCT
T ss_pred ecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccc
Confidence 223445566777666541 11122234667788888887655 3333 245777889999998654 33333 4678899
Q ss_pred CCcEEeccCCCCccCCC-CCCCCCCCCEEEccCCcCCccc-hhhccCCcCcEecccCCcccccCC
Q 017542 206 SLKKLELGDCEIMEIPP-DIGCLSSLESLNLSGNNIESLP-TSISQLSRLRWLYLVNCVKLQSLP 268 (369)
Q Consensus 206 ~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~l~~~~ 268 (369)
+|+.+.+.++.+..+.. .+.+|.+|+.+.|..+ ++.+. .++.+|.+|+.+.+..+ ++.++
T Consensus 287 ~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~--v~~I~ 348 (379)
T 4h09_A 287 NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS--ITLIE 348 (379)
T ss_dssp TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT--CCEEC
T ss_pred ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc--cCEEc
Confidence 99999999888877543 4778999999999754 66665 46788999999988543 44443
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.48 E-value=1.4e-07 Score=74.43 Aligned_cols=87 Identities=14% Similarity=0.195 Sum_probs=45.1
Q ss_pred CCCEEeCcCCcccccccccccCCCCCcEEecCCCcCCcc-Cchhhhc----cCccceeeccccccccc-cchhhhcCCCC
Q 017542 64 NLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLES-FPEILEK----MELLEEINLEEASNIKE-LPSSIENLEGL 137 (369)
Q Consensus 64 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~----l~~L~~L~l~~~~~~~~-~~~~~~~l~~L 137 (369)
+|+.||+++|.....--..+.++++|++|++++|..+++ -...+.. +++|++|++++|..+++ .-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 456666666553333333345566666666666654333 1122332 23566666666654442 22334556666
Q ss_pred CeEeecCCCCCCC
Q 017542 138 KQLKLTGCTKLGS 150 (369)
Q Consensus 138 ~~L~l~~~~~~~~ 150 (369)
++|++++|..+++
T Consensus 142 ~~L~L~~c~~Itd 154 (176)
T 3e4g_A 142 KYLFLSDLPGVKE 154 (176)
T ss_dssp CEEEEESCTTCCC
T ss_pred CEEECCCCCCCCc
Confidence 6666666665544
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.27 E-value=1.1e-07 Score=76.88 Aligned_cols=83 Identities=14% Similarity=0.118 Sum_probs=48.2
Q ss_pred ccCCCCcEEeecCCCCCC-----CCccccCCCCCcEEeccCCCCcc-----CCCCCCCCCCCCEEEc--cCCcCCc----
Q 017542 179 VDLNKLETLSLFECRGLV-----LPPLLSGLSSLKKLELGDCEIME-----IPPDIGCLSSLESLNL--SGNNIES---- 242 (369)
Q Consensus 179 ~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l--~~~~l~~---- 242 (369)
...++|++|++++|.... +...+...++|++|++++|.+.+ +...+...+.|++|++ ++|.+.+
T Consensus 62 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~ 141 (185)
T 1io0_A 62 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM 141 (185)
T ss_dssp TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHH
Confidence 334556666666665321 22233444566777777776654 2334555667777777 6676662
Q ss_pred -cchhhccCCcCcEecccCC
Q 017542 243 -LPTSISQLSRLRWLYLVNC 261 (369)
Q Consensus 243 -~~~~~~~~~~L~~L~l~~~ 261 (369)
+...+...++|++|++++|
T Consensus 142 ~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 142 EIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHhCCCcCEEeccCC
Confidence 3445556677777777776
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.24 E-value=8.5e-07 Score=71.52 Aligned_cols=105 Identities=15% Similarity=0.125 Sum_probs=51.5
Q ss_pred CeeEEecCCc-cCc-----ccCccCCCCCCCCEEeCcCCccccc----ccccccCCCCCcEEecCCCcCCcc----Cchh
Q 017542 41 NVVELNLMCT-PIE-----EVPLSIECLPNLETLEMSFCNSLKR----LSTSICKLKSLRSLDLSYCINLES----FPEI 106 (369)
Q Consensus 41 ~L~~L~l~~~-~~~-----~l~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~ 106 (369)
.|++|+++++ .++ .+...+...++|++|+|++|..... +...+...++|++|++++|..... +...
T Consensus 37 ~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~ 116 (185)
T 1io0_A 37 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA 116 (185)
T ss_dssp TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHG
T ss_pred CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHH
Confidence 5555555555 443 1223344455666666666544321 223334445666666666544332 2334
Q ss_pred hhccCccceeec--cccccccc----cchhhhcCCCCCeEeecCC
Q 017542 107 LEKMELLEEINL--EEASNIKE----LPSSIENLEGLKQLKLTGC 145 (369)
Q Consensus 107 ~~~l~~L~~L~l--~~~~~~~~----~~~~~~~l~~L~~L~l~~~ 145 (369)
+...+.|++|++ ++|..... +...+...++|++|++++|
T Consensus 117 L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 117 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 445555666666 44443321 2333444556666666554
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.90 E-value=3.5e-06 Score=71.60 Aligned_cols=77 Identities=26% Similarity=0.302 Sum_probs=46.7
Q ss_pred cCCCCcEEeecCCCCCCCC---ccccCCCCCcEEeccCCCCccCCC--CCCCCCCCCEEEccCCcCC-ccc-------hh
Q 017542 180 DLNKLETLSLFECRGLVLP---PLLSGLSSLKKLELGDCEIMEIPP--DIGCLSSLESLNLSGNNIE-SLP-------TS 246 (369)
Q Consensus 180 ~~~~L~~L~l~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~l~-~~~-------~~ 246 (369)
.+++|+.|++++|....++ ..+..+++|+.|++++|.+.++.. .+..+ +|++|++++|.+. .+| ..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHH
Confidence 4667777777777755443 344567777777777777766421 12223 6777777777665 232 23
Q ss_pred hccCCcCcEec
Q 017542 247 ISQLSRLRWLY 257 (369)
Q Consensus 247 ~~~~~~L~~L~ 257 (369)
+..+|+|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 45666666665
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.81 E-value=3.6e-05 Score=65.35 Aligned_cols=37 Identities=27% Similarity=0.292 Sum_probs=15.6
Q ss_pred CCCCcEEecCCCcCCc--cCchhhhccCccceeeccccc
Q 017542 86 LKSLRSLDLSYCINLE--SFPEILEKMELLEEINLEEAS 122 (369)
Q Consensus 86 ~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~ 122 (369)
+++|+.|+|++|.... .++..+..+++|+.|++++|.
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~ 207 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE 207 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc
Confidence 4444444444443322 222333444444444444433
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.76 E-value=0.00027 Score=56.74 Aligned_cols=34 Identities=12% Similarity=0.078 Sum_probs=15.6
Q ss_pred CCCCcEEeccCCCCcc-----CCCCCCCCCCCCEEEccC
Q 017542 204 LSSLKKLELGDCEIME-----IPPDIGCLSSLESLNLSG 237 (369)
Q Consensus 204 ~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~ 237 (369)
-+.|+.|++++|.+.. +...+..-+.|++|+|++
T Consensus 97 N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 97 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred CCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 3445555555555443 222233334455555554
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.75 E-value=0.0014 Score=52.69 Aligned_cols=104 Identities=13% Similarity=0.113 Sum_probs=52.6
Q ss_pred CeeEEecCCc-cCc-----ccCccCCCCCCCCEEeCcCCccccc----ccccccCCCCCcEEecCCCcCCcc----Cchh
Q 017542 41 NVVELNLMCT-PIE-----EVPLSIECLPNLETLEMSFCNSLKR----LSTSICKLKSLRSLDLSYCINLES----FPEI 106 (369)
Q Consensus 41 ~L~~L~l~~~-~~~-----~l~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~ 106 (369)
.|+.|+++++ .+. .+-..+...+.|+.|+|++|...+. +...+..-..|+.|+|++|.+... +.+.
T Consensus 42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~a 121 (197)
T 1pgv_A 42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS 121 (197)
T ss_dssp SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHH
Confidence 5666666553 443 2233344556666666666654332 223334456666666666654432 2233
Q ss_pred hhccCccceeecccccc--cc-----ccchhhhcCCCCCeEeecC
Q 017542 107 LEKMELLEEINLEEASN--IK-----ELPSSIENLEGLKQLKLTG 144 (369)
Q Consensus 107 ~~~l~~L~~L~l~~~~~--~~-----~~~~~~~~l~~L~~L~l~~ 144 (369)
+..-+.|++|+++++.. ++ .+...+..-+.|++|+++.
T Consensus 122 L~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 122 TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF 166 (197)
T ss_dssp TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred HhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccC
Confidence 44445566666653321 11 1333445556666666654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.72 E-value=0.0025 Score=47.60 Aligned_cols=52 Identities=23% Similarity=0.342 Sum_probs=38.0
Q ss_pred EEecCCCCCcc--ccCCccC-CeeEEecCCccCcccCc-cCCCCCCCCEEeCcCCcc
Q 017542 23 KIDCYKCVNLR--EFPRISG-NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNS 75 (369)
Q Consensus 23 ~L~l~~~~~l~--~~~~~~~-~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~ 75 (369)
.++.+++. +. .+|..++ +|++|+|++|.++.++. .+..+++|++|+|++|.+
T Consensus 12 ~v~Cs~~~-L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRG-LTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSC-CCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCC-CccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 67777766 66 7776655 78888888888887765 356677788888777654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.24 E-value=0.01 Score=44.24 Aligned_cols=52 Identities=25% Similarity=0.337 Sum_probs=27.1
Q ss_pred EEeccCCCCc--cCCCCCCCCCCCCEEEccCCcCCccch-hhccCCcCcEecccCCc
Q 017542 209 KLELGDCEIM--EIPPDIGCLSSLESLNLSGNNIESLPT-SISQLSRLRWLYLVNCV 262 (369)
Q Consensus 209 ~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~ 262 (369)
.++.++..++ .+|.. ..++|++|+|++|.|+.++. .+..+++|+.|+|.+|+
T Consensus 12 ~v~Cs~~~L~~~~vP~~--lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA--FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSC--CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCC--CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4444454444 44432 12356666666666665553 33555666666666653
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=55.90 E-value=14 Score=25.56 Aligned_cols=44 Identities=7% Similarity=-0.100 Sum_probs=22.5
Q ss_pred CcccCc-cCCCCCCCCEEeCcCCcccccccccccCCCCCcEEecCC
Q 017542 52 IEEVPL-SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSY 96 (369)
Q Consensus 52 ~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 96 (369)
++.|.. .|.+|.+|+.+.|-.. ....-...|.+|.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344433 3556666666666542 2222223455666666666654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=41.53 E-value=63 Score=22.07 Aligned_cols=37 Identities=11% Similarity=0.062 Sum_probs=19.0
Q ss_pred cccCCCCCcEEecCCCcCCccCchhhhccCccceeecc
Q 017542 82 SICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLE 119 (369)
Q Consensus 82 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 119 (369)
.|.+|.+|+.+.|-. .....-...|..|.+|+.+.+.
T Consensus 15 aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 15 LFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp TTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEEC
T ss_pred HhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEc
Confidence 455566666666654 2222233445555566555554
Done!