BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017543
(369 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 69/124 (55%), Gaps = 7/124 (5%)
Query: 128 DTRDNFTSHLYSALSQKSIETF-----INRGDEISQSLVDAIEASAISLIIFSEGYASSR 182
DTR NF S LY L ++SI TF + G S L IE S ++++ SE YA+S
Sbjct: 19 DTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASS 78
Query: 183 WFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQTW 242
W D+LV I+ ++ V+P+FYGV+P V+W TG + F K R E+ EK+ W
Sbjct: 79 WCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKW 136
Query: 243 RNAL 246
R AL
Sbjct: 137 RQAL 140
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 76/127 (59%), Gaps = 8/127 (6%)
Query: 128 DTRDNFTSHLYSALSQKSIETFIN-----RGDEISQSLVDAIEASAISLIIFSEGYASSR 182
DTR+ FT LY +L + I TF + +G EI +L+ AI+ S I + I S GYA S+
Sbjct: 46 DTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSK 105
Query: 183 WFFDKLVKILQCKRVYG-QIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQT 241
W +L +I++ + +I+LP+FY VDP+ V+ TG Y +F K +F + + +Q
Sbjct: 106 WCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKF--DGQTIQN 163
Query: 242 WRNALKE 248
W++ALK+
Sbjct: 164 WKDALKK 170
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 66/157 (42%), Gaps = 32/157 (20%)
Query: 244 NALKEKIISACNIFTKTPNPSFS-------QHLNTLVVL---------------NLRDCK 281
N L+E I AC T+ P P S Q L L L NL++ K
Sbjct: 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLK 209
Query: 282 SLKSL--------PAGIHLEFLKELDLSGCSKLKRLPDI-SSAANIEEMFLNGTA-IEEL 331
SLK PA HL L+ELDL GC+ L+ P I A ++ + L + + L
Sbjct: 210 SLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTL 269
Query: 332 PSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI 368
P I L +L LDL C +L LPS + C I
Sbjct: 270 PLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII 306
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 306 LKRLPDISSA-ANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGL 359
L LPD A +E + L + LP+SI L +L L + C L LP L
Sbjct: 116 LXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPL 170
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 283 LKSLPAGIH--LEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPSSIECL 338
L +LP G+ L L LDL G ++L LP +++E+F+ + ELP IE L
Sbjct: 76 LGALPVGVFDSLTQLTVLDL-GTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERL 134
Query: 339 YKLLHLDLEDCKSLKSLPSGLF 360
L HL L+ LKS+P G F
Sbjct: 135 THLTHLALDQ-NQLKSIPHGAF 155
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 298 LDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPS 357
LDLS +I + ++LNG ++ ELP+ I+ L L LDL + L SLP+
Sbjct: 229 LDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPA 287
Query: 358 GLFLC 362
L C
Sbjct: 288 ELGSC 292
>pdb|2IEW|A Chain A, Crystal Structure Of Inositol Phosphate Multikinase Ipk2
From S. Cerevisiae
pdb|2IEW|B Chain B, Crystal Structure Of Inositol Phosphate Multikinase Ipk2
From S. Cerevisiae
pdb|2IF8|A Chain A, Crystal Structure Of Inositol Phosphate Multikinase Ipk2
In Complex With Adp And Mn2+ From S. Cerevisiae
pdb|2IF8|B Chain B, Crystal Structure Of Inositol Phosphate Multikinase Ipk2
In Complex With Adp And Mn2+ From S. Cerevisiae
Length = 363
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 5/106 (4%)
Query: 5 SLSDGSLDTMARRPADPEEELRWMSQEVRESSPRTSAASGD----DWRSAFDAAANGPVS 60
+L+DG + +PA P+E + + +VR+ S R S+A GD W + N
Sbjct: 20 TLTDGD-GLLIFKPAFPQELEFYKAIQVRDVSRRKSSADGDAPLCSWMPTYLGVLNEGAK 78
Query: 61 LRSYSRSASNGHSRRYSDPAENGDVRSGSNSGSRRTPNREGYRYGY 106
+ +A R SD +N D + S++ E YG+
Sbjct: 79 IEQSGDAALLKIDERLSDSTDNLDSIPVKSEKSKQYLVLENLLYGF 124
>pdb|2WSK|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Glgx From
Escherichia Coli K-12
Length = 657
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 69 SNGHSRRYSDPAENGDVRSGSNSGSRRTPNREGYRYGYILHS 110
+NG RY P +GD+ G + R G RYGY +H
Sbjct: 40 ANGQEHRYDLPGHSGDIWHGYLPDA-----RPGLRYGYRVHG 76
>pdb|3LSB|A Chain A, Crystal Structure Of The Mutant E241q Of Atrazine
Chlorohydrolase Trzn From Arthrobacter Aurescens Tc1
Complexed With Zinc And Ametrin
pdb|3LSB|B Chain B, Crystal Structure Of The Mutant E241q Of Atrazine
Chlorohydrolase Trzn From Arthrobacter Aurescens Tc1
Complexed With Zinc And Ametrin
pdb|3LSC|A Chain A, Crystal Structure Of The Mutant E241q Of Atrazine
Chlorohydrolase Trzn From Arthrobacter Aurescens Tc1
Complexed With Zinc And Atraton
pdb|3LSC|B Chain B, Crystal Structure Of The Mutant E241q Of Atrazine
Chlorohydrolase Trzn From Arthrobacter Aurescens Tc1
Complexed With Zinc And Atraton
Length = 456
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 6 LSDGSLDTMARRPADPEEELRWMS-QEVRESSPRTSA 41
L D L +A RPADP E +W+S +E+ + R SA
Sbjct: 336 LGDLRLAALAHRPADPNEPEKWLSARELLRMATRGSA 372
>pdb|3LS9|A Chain A, Crystal Structure Of Atrazine Chlorohydrolase Trzn From
Arthrobacter Aurescens Tc1 Complexed With Zinc
pdb|3LS9|B Chain B, Crystal Structure Of Atrazine Chlorohydrolase Trzn From
Arthrobacter Aurescens Tc1 Complexed With Zinc
Length = 456
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 6 LSDGSLDTMARRPADPEEELRWMS-QEVRESSPRTSA 41
L D L +A RPADP E +W+S +E+ + R SA
Sbjct: 336 LGDLRLAALAHRPADPNEPEKWLSARELLRMATRGSA 372
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,305,738
Number of Sequences: 62578
Number of extensions: 472530
Number of successful extensions: 1121
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1102
Number of HSP's gapped (non-prelim): 15
length of query: 369
length of database: 14,973,337
effective HSP length: 100
effective length of query: 269
effective length of database: 8,715,537
effective search space: 2344479453
effective search space used: 2344479453
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)