Query 017543
Match_columns 369
No_of_seqs 344 out of 2632
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 09:30:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017543.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017543hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03194 putative disease resi 100.0 7.7E-32 1.7E-36 233.3 8.4 142 95-257 8-155 (187)
2 PLN03210 Resistant to P. syrin 100.0 2.2E-31 4.7E-36 294.2 6.9 138 118-257 13-154 (1153)
3 KOG4658 Apoptotic ATPase [Sign 99.7 3.7E-18 8.1E-23 182.3 -2.9 272 22-369 342-648 (889)
4 PF01582 TIR: TIR domain; Int 99.6 3.6E-18 7.8E-23 145.1 -3.9 127 120-246 1-139 (141)
5 smart00255 TIR Toll - interleu 99.5 5E-15 1.1E-19 125.1 4.2 131 117-248 1-136 (140)
6 KOG0617 Ras suppressor protein 99.2 1.8E-12 4E-17 111.2 -1.0 112 253-368 64-178 (264)
7 PLN00113 leucine-rich repeat r 99.1 5.8E-11 1.3E-15 130.3 5.7 121 246-368 166-289 (968)
8 PLN03210 Resistant to P. syrin 99.1 2E-10 4.2E-15 128.1 8.1 119 246-368 780-898 (1153)
9 KOG0617 Ras suppressor protein 99.1 7.7E-12 1.7E-16 107.4 -2.8 107 253-363 87-196 (264)
10 PLN00113 leucine-rich repeat r 99.0 1.5E-10 3.2E-15 127.1 5.4 122 245-368 189-313 (968)
11 KOG0444 Cytoskeletal regulator 99.0 1.4E-11 3E-16 123.3 -3.6 82 285-368 213-296 (1255)
12 KOG0472 Leucine-rich repeat pr 99.0 2.2E-10 4.8E-15 109.7 2.6 98 255-358 445-545 (565)
13 KOG0444 Cytoskeletal regulator 99.0 2.2E-11 4.9E-16 121.9 -4.4 111 253-368 230-344 (1255)
14 KOG0472 Leucine-rich repeat pr 98.9 1.2E-10 2.5E-15 111.6 -1.2 124 236-368 176-302 (565)
15 PLN03150 hypothetical protein; 98.9 2.1E-09 4.5E-14 112.6 7.0 92 271-362 419-513 (623)
16 PF13676 TIR_2: TIR domain; PD 98.8 5.3E-10 1.1E-14 89.2 -1.2 82 120-207 1-86 (102)
17 PF14580 LRR_9: Leucine-rich r 98.7 1E-08 2.2E-13 89.9 3.7 97 268-368 40-145 (175)
18 PLN03150 hypothetical protein; 98.7 2.3E-08 5E-13 104.7 5.7 92 266-357 438-533 (623)
19 KOG1259 Nischarin, modulator o 98.6 6E-09 1.3E-13 96.8 -0.8 122 238-368 279-404 (490)
20 PF13855 LRR_8: Leucine rich r 98.6 4.4E-08 9.6E-13 70.6 3.5 57 293-350 1-60 (61)
21 KOG0532 Leucine-rich repeat (L 98.5 3.6E-09 7.7E-14 105.4 -4.3 106 253-363 106-212 (722)
22 PF14580 LRR_9: Leucine-rich r 98.5 6.8E-08 1.5E-12 84.8 2.4 98 267-367 16-117 (175)
23 KOG4658 Apoptotic ATPase [Sign 98.4 6.8E-08 1.5E-12 104.1 2.0 85 264-349 565-652 (889)
24 KOG0532 Leucine-rich repeat (L 98.4 2.1E-08 4.6E-13 100.0 -2.3 103 253-361 151-255 (722)
25 PF13855 LRR_8: Leucine rich r 98.4 2.2E-07 4.7E-12 66.9 3.5 57 270-328 1-61 (61)
26 KOG0618 Serine/threonine phosp 98.4 3.8E-08 8.2E-13 102.9 -0.7 106 255-364 31-138 (1081)
27 PF12799 LRR_4: Leucine Rich r 98.3 5.1E-07 1.1E-11 60.7 3.2 40 316-356 1-40 (44)
28 KOG0618 Serine/threonine phosp 98.3 1.2E-07 2.6E-12 99.3 -0.3 82 266-350 379-463 (1081)
29 PRK15370 E3 ubiquitin-protein 98.2 1.5E-06 3.2E-11 92.5 5.8 103 245-360 221-324 (754)
30 PRK15387 E3 ubiquitin-protein 98.2 1.2E-06 2.6E-11 93.1 4.7 83 271-359 383-465 (788)
31 KOG4194 Membrane glycoprotein 98.2 1.1E-06 2.3E-11 88.4 3.9 109 255-368 112-226 (873)
32 KOG4194 Membrane glycoprotein 98.2 3.7E-07 8E-12 91.6 -0.4 91 257-350 257-352 (873)
33 PRK15387 E3 ubiquitin-protein 98.1 2.8E-06 6.1E-11 90.3 6.1 90 271-368 343-450 (788)
34 COG4886 Leucine-rich repeat (L 98.1 9.5E-07 2.1E-11 87.4 2.1 110 254-368 125-237 (394)
35 PRK15370 E3 ubiquitin-protein 98.1 3.7E-06 8.1E-11 89.5 6.5 101 246-359 201-302 (754)
36 KOG1259 Nischarin, modulator o 98.1 2.9E-07 6.3E-12 85.7 -1.7 89 266-357 325-416 (490)
37 COG4886 Leucine-rich repeat (L 98.1 1.4E-06 3E-11 86.2 1.4 109 255-368 150-260 (394)
38 PF12799 LRR_4: Leucine Rich r 98.0 4.4E-06 9.5E-11 56.1 2.6 40 293-333 1-41 (44)
39 KOG4579 Leucine-rich repeat (L 97.9 1.2E-06 2.5E-11 73.1 -1.8 89 268-359 51-142 (177)
40 PRK15386 type III secretion pr 97.9 2E-05 4.3E-10 77.7 5.9 102 238-352 47-169 (426)
41 KOG4237 Extracellular matrix p 97.9 7.3E-07 1.6E-11 85.8 -4.4 112 254-368 76-193 (498)
42 KOG4579 Leucine-rich repeat (L 97.9 9.7E-07 2.1E-11 73.6 -3.1 94 272-368 29-128 (177)
43 KOG0531 Protein phosphatase 1, 97.7 1.7E-05 3.8E-10 79.2 1.6 88 266-357 91-179 (414)
44 PRK15386 type III secretion pr 97.7 4.1E-05 8.9E-10 75.5 4.1 84 268-362 50-137 (426)
45 KOG4237 Extracellular matrix p 97.6 3.9E-06 8.5E-11 80.9 -2.9 96 271-368 68-169 (498)
46 cd00116 LRR_RI Leucine-rich re 97.6 1.2E-05 2.6E-10 76.5 -0.6 98 270-368 108-226 (319)
47 KOG3207 Beta-tubulin folding c 97.5 3E-05 6.4E-10 75.7 1.3 99 268-368 220-331 (505)
48 KOG1859 Leucine-rich repeat pr 97.5 7.2E-06 1.6E-10 84.4 -3.2 92 252-350 171-265 (1096)
49 cd00116 LRR_RI Leucine-rich re 97.5 2.8E-05 6.1E-10 74.0 0.2 85 267-352 133-234 (319)
50 KOG0531 Protein phosphatase 1, 97.1 0.00017 3.7E-09 72.0 0.8 84 269-356 71-156 (414)
51 KOG2739 Leucine-rich acidic nu 97.1 0.00051 1.1E-08 63.2 3.7 82 267-350 40-127 (260)
52 KOG2123 Uncharacterized conser 97.0 3E-05 6.4E-10 71.9 -4.9 96 271-368 20-122 (388)
53 KOG1644 U2-associated snRNP A' 96.9 0.0014 3E-08 58.3 4.8 89 255-348 52-149 (233)
54 PF00560 LRR_1: Leucine Rich R 96.7 0.00051 1.1E-08 38.8 0.6 21 317-337 1-21 (22)
55 KOG1859 Leucine-rich repeat pr 96.7 0.0001 2.2E-09 76.2 -4.0 103 242-350 185-290 (1096)
56 KOG1644 U2-associated snRNP A' 96.6 0.0025 5.4E-08 56.8 4.5 97 269-368 41-145 (233)
57 KOG3665 ZYG-1-like serine/thre 96.5 0.00066 1.4E-08 71.9 0.2 82 268-350 146-231 (699)
58 KOG3207 Beta-tubulin folding c 96.5 0.00041 8.9E-09 68.0 -1.6 82 268-350 195-282 (505)
59 KOG3665 ZYG-1-like serine/thre 96.3 0.0026 5.7E-08 67.4 2.8 83 266-351 169-262 (699)
60 KOG2739 Leucine-rich acidic nu 96.1 0.0029 6.3E-08 58.2 2.0 75 286-363 35-113 (260)
61 PF00560 LRR_1: Leucine Rich R 95.7 0.0036 7.7E-08 35.3 0.4 22 340-362 1-22 (22)
62 KOG3678 SARM protein (with ste 95.6 0.0087 1.9E-07 59.2 2.9 85 118-208 613-710 (832)
63 PF13504 LRR_7: Leucine rich r 95.2 0.011 2.4E-07 31.1 1.3 16 317-332 2-17 (17)
64 PF08937 DUF1863: MTH538 TIR-l 94.9 0.028 6.1E-07 46.8 3.7 75 118-193 1-97 (130)
65 KOG2120 SCF ubiquitin ligase, 94.5 0.0014 2.9E-08 61.7 -5.8 26 26-51 3-28 (419)
66 smart00369 LRR_TYP Leucine-ric 94.2 0.031 6.8E-07 32.6 1.7 21 315-335 1-21 (26)
67 smart00370 LRR Leucine-rich re 94.2 0.031 6.8E-07 32.6 1.7 21 315-335 1-21 (26)
68 KOG2982 Uncharacterized conser 94.2 0.01 2.2E-07 55.9 -0.8 13 268-280 95-107 (418)
69 KOG2123 Uncharacterized conser 93.5 0.0046 9.9E-08 57.7 -4.3 78 266-345 37-123 (388)
70 PF13504 LRR_7: Leucine rich r 93.4 0.046 1E-06 28.7 1.2 17 339-356 1-17 (17)
71 smart00369 LRR_TYP Leucine-ric 92.8 0.088 1.9E-06 30.6 2.0 23 338-361 1-23 (26)
72 smart00370 LRR Leucine-rich re 92.8 0.088 1.9E-06 30.6 2.0 23 338-361 1-23 (26)
73 KOG0473 Leucine-rich repeat pr 92.5 0.0028 6.1E-08 57.7 -7.0 84 266-351 38-123 (326)
74 KOG1909 Ran GTPase-activating 91.9 0.028 6E-07 54.0 -1.5 84 266-350 209-309 (382)
75 KOG0473 Leucine-rich repeat pr 91.7 0.0046 1E-07 56.3 -6.6 76 291-368 40-116 (326)
76 KOG2120 SCF ubiquitin ligase, 91.3 0.038 8.2E-07 52.2 -1.2 59 291-349 311-373 (419)
77 PF13306 LRR_5: Leucine rich r 91.0 0.36 7.8E-06 39.1 4.4 92 266-365 31-128 (129)
78 PF13306 LRR_5: Leucine rich r 89.1 1 2.2E-05 36.4 5.7 87 266-359 8-99 (129)
79 COG5238 RNA1 Ran GTPase-activa 88.4 0.28 6E-06 46.0 1.9 39 291-329 90-133 (388)
80 KOG2982 Uncharacterized conser 87.0 0.2 4.3E-06 47.5 0.1 83 267-350 68-157 (418)
81 KOG1947 Leucine rich repeat pr 86.3 0.15 3.2E-06 51.1 -1.3 87 266-352 210-308 (482)
82 PF10137 TIR-like: Predicted n 86.1 2 4.4E-05 35.5 5.7 56 119-177 1-61 (125)
83 smart00364 LRR_BAC Leucine-ric 86.0 0.42 9.2E-06 28.0 1.1 17 317-333 3-19 (26)
84 KOG1909 Ran GTPase-activating 85.8 0.24 5.1E-06 47.8 -0.0 81 269-350 184-281 (382)
85 PF08357 SEFIR: SEFIR domain; 82.8 2.7 5.8E-05 35.4 5.2 61 119-179 2-71 (150)
86 smart00365 LRR_SD22 Leucine-ri 82.4 0.94 2E-05 26.6 1.5 17 315-331 1-17 (26)
87 KOG3864 Uncharacterized conser 77.3 0.29 6.2E-06 43.8 -2.6 57 292-348 124-185 (221)
88 COG5238 RNA1 Ran GTPase-activa 70.9 6.3 0.00014 37.2 4.3 83 265-351 115-226 (388)
89 PF13516 LRR_6: Leucine Rich r 70.4 2 4.4E-05 24.2 0.7 14 316-329 2-15 (24)
90 KOG3864 Uncharacterized conser 70.1 0.83 1.8E-05 40.9 -1.5 60 266-325 121-185 (221)
91 KOG4341 F-box protein containi 69.6 0.83 1.8E-05 45.2 -1.7 84 268-351 318-413 (483)
92 KOG4341 F-box protein containi 66.0 1.9 4.2E-05 42.7 -0.0 60 291-350 370-437 (483)
93 PF13271 DUF4062: Domain of un 59.9 37 0.00079 25.6 6.1 63 119-182 1-68 (83)
94 PF15178 TOM_sub5: Mitochondri 59.6 6.5 0.00014 26.3 1.6 16 18-33 10-25 (51)
95 KOG3763 mRNA export factor TAP 58.0 6 0.00013 40.6 1.8 61 268-329 216-283 (585)
96 smart00368 LRR_RI Leucine rich 52.6 10 0.00022 22.4 1.5 12 317-328 3-14 (28)
97 smart00367 LRR_CC Leucine-rich 49.6 12 0.00027 21.4 1.6 13 294-306 3-15 (26)
98 PF08945 Bclx_interact: Bcl-x 40.5 13 0.00028 23.8 0.6 8 27-34 19-26 (40)
99 KOG3763 mRNA export factor TAP 37.6 16 0.00035 37.6 1.2 62 291-354 216-285 (585)
100 KOG1947 Leucine rich repeat pr 36.6 9.6 0.00021 37.9 -0.6 83 269-351 187-281 (482)
101 COG4916 Uncharacterized protei 31.7 50 0.0011 30.7 3.2 75 118-194 178-262 (329)
102 PHA02920 putative virulence fa 30.3 48 0.001 26.4 2.5 57 1-57 45-101 (117)
No 1
>PLN03194 putative disease resistance protein; Provisional
Probab=99.97 E-value=7.7e-32 Score=233.33 Aligned_cols=142 Identities=24% Similarity=0.381 Sum_probs=119.6
Q ss_pred cCCCCCCccccceeccccCCCCCCCeeecCCCccccCchHHHHHHHHhhCCcceEe-----ccCcchhHHHHHHHHHcce
Q 017543 95 RTPNREGYRYGYILHSHAHFDSYEGVPTAIPSEDTRDNFTSHLYSALSQKSIETFI-----NRGDEISQSLVDAIEASAI 169 (369)
Q Consensus 95 ~~~~r~~~~~~~~~~~~~~~~~~~dvFis~~~~d~r~~F~~~L~~aL~~~gi~~~~-----~~G~~i~~~l~~~ie~S~i 169 (369)
+.-||.-.+|+ ++.--...|||||||+|+|+|+.|++|||.+|.++||++|+ .+|+.|.+.|.+||++|++
T Consensus 8 ~~~~~~~~~~~----~~~~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri 83 (187)
T PLN03194 8 QLNNRLFLHYP----SSSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKV 83 (187)
T ss_pred HHhhhhhcccc----cCCCCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeE
Confidence 33455545554 22223345799999999999999999999999999999999 6899999999999999999
Q ss_pred eeEEeccCCcccccccccceeeEEeeeccCeEEeeeeeccCCCCccCC-CCCccccchhhhhhhhcchhHHHHHHHhhhh
Q 017543 170 SLIIFSEGYASSRWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWP-TGSYGDSFLKLEERFKENSEKLQTWRNALKE 248 (369)
Q Consensus 170 ~ivv~S~~y~~S~~cl~ELv~i~~~~~~~~l~vlPiFy~V~pS~Vr~q-~g~fg~af~~~e~~~~~~~~~l~~W~~aL~~ 248 (369)
+|+|||++|+.|.||++||++|++|. ..|+||||+|+|++|++| .+. ...+++++|+.||++
T Consensus 84 ~IvVfS~~Ya~S~WCLdEL~~I~e~~----~~ViPIFY~VdPsdVr~q~~~~-------------~~~e~v~~Wr~AL~~ 146 (187)
T PLN03194 84 GVAVFSPRYCESYFCLHELALIMESK----KRVIPIFCDVKPSQLRVVDNGT-------------CPDEEIRRFNWALEE 146 (187)
T ss_pred EEEEECCCcccchhHHHHHHHHHHcC----CEEEEEEecCCHHHhhccccCC-------------CCHHHHHHHHHHHHH
Confidence 99999999999999999999999873 479999999999999997 332 135789999999999
Q ss_pred hhhhhcccc
Q 017543 249 KIISACNIF 257 (369)
Q Consensus 249 L~ll~~~~l 257 (369)
++.+.+..+
T Consensus 147 va~l~G~~~ 155 (187)
T PLN03194 147 AKYTVGLTF 155 (187)
T ss_pred HhccccccC
Confidence 988776543
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.97 E-value=2.2e-31 Score=294.16 Aligned_cols=138 Identities=34% Similarity=0.606 Sum_probs=129.3
Q ss_pred CCeeecCCCccccCchHHHHHHHHhhCCcceEe----ccCcchhHHHHHHHHHcceeeEEeccCCcccccccccceeeEE
Q 017543 118 EGVPTAIPSEDTRDNFTSHLYSALSQKSIETFI----NRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLVKILQ 193 (369)
Q Consensus 118 ~dvFis~~~~d~r~~F~~~L~~aL~~~gi~~~~----~~G~~i~~~l~~~ie~S~i~ivv~S~~y~~S~~cl~ELv~i~~ 193 (369)
||||+||||+|+|+.|++|||.||.++||.+|+ .+|+.|.++|.+||++|+++|||||++|++|+|||+||++|++
T Consensus 13 ~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s~wcl~el~~i~~ 92 (1153)
T PLN03210 13 YDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLNELLEIVR 92 (1153)
T ss_pred CcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCcccchHHHHHHHHHHH
Confidence 499999999999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred eeeccCeEEeeeeeccCCCCccCCCCCccccchhhhhhhhcchhHHHHHHHhhhhhhhhhcccc
Q 017543 194 CKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQTWRNALKEKIISACNIF 257 (369)
Q Consensus 194 ~~~~~~l~vlPiFy~V~pS~Vr~q~g~fg~af~~~e~~~~~~~~~l~~W~~aL~~L~ll~~~~l 257 (369)
|.++.++.|+||||+|+|++|++|+|.||++|.+++... ..+++++|+.||++++...+...
T Consensus 93 ~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~--~~~~~~~w~~al~~~~~~~g~~~ 154 (1153)
T PLN03210 93 CKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNK--TEDEKIQWKQALTDVANILGYHS 154 (1153)
T ss_pred hhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhccc--chhHHHHHHHHHHHHhCcCceec
Confidence 999999999999999999999999999999999877643 46789999999999887765443
No 3
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.66 E-value=3.7e-18 Score=182.30 Aligned_cols=272 Identities=22% Similarity=0.285 Sum_probs=184.0
Q ss_pred HHHHhHhhhhhhc-------cCCCCCCC-CCCchhHHHHhhhcCCCcccccccCCCCCCCcCCCCCCCCCCcccCCCCCC
Q 017543 22 EEELRWMSQEVRE-------SSPRTSAA-SGDDWRSAFDAAANGPVSLRSYSRSASNGHSRRYSDPAENGDVRSGSNSGS 93 (369)
Q Consensus 22 ~~~~~~~~~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (369)
++=-|-|++.++| .|+.|++. +-.+|+.+........+... + +. -
T Consensus 342 ~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~-----~-------------------~~---~ 394 (889)
T KOG4658|consen 342 EELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADF-----S-------------------GM---E 394 (889)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCC-----C-------------------ch---h
Confidence 4455778888888 77888888 55699999987665532210 0 00 1
Q ss_pred ccCCCCCCccccceeccccCCCCCCCeeecCCCccccCchHHHHHHHH--------hhCCcceEe---------------
Q 017543 94 RRTPNREGYRYGYILHSHAHFDSYEGVPTAIPSEDTRDNFTSHLYSAL--------SQKSIETFI--------------- 150 (369)
Q Consensus 94 ~~~~~r~~~~~~~~~~~~~~~~~~~dvFis~~~~d~r~~F~~~L~~aL--------~~~gi~~~~--------------- 150 (369)
.....-.+|+|+. .. ++.|.|| ||||| .++.|.+|+
T Consensus 395 ~~i~~iLklSyd~-----------------L~-~~lK~CF---LycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~ 453 (889)
T KOG4658|consen 395 ESILPILKLSYDN-----------------LP-EELKSCF---LYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAE 453 (889)
T ss_pred hhhHHhhhccHhh-----------------hh-HHHHHHH---HhhccCCcccccchHHHHHHHHhccCcCccccccchh
Confidence 2333446677763 33 5689999 99999 444556666
Q ss_pred ccCcchhHHHHHHHHHcceeeEEeccCCcccccccccceeeEEeeeccCeEEeeeeeccCCCCccCCCCCccccchhhhh
Q 017543 151 NRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEE 230 (369)
Q Consensus 151 ~~G~~i~~~l~~~ie~S~i~ivv~S~~y~~S~~cl~ELv~i~~~~~~~~l~vlPiFy~V~pS~Vr~q~g~fg~af~~~e~ 230 (369)
..|+++.++|..+. .+.... ++ . --+-++|||.++++.+++ .++...+...+. ... ..
T Consensus 454 d~G~~~i~~LV~~~---Ll~~~~---~~-~----~~~~~kmHDvvRe~al~i--------as~~~~~~e~~i--v~~-~~ 511 (889)
T KOG4658|consen 454 DVGYDYIEELVRAS---LLIEER---DE-G----RKETVKMHDVVREMALWI--------ASDFGKQEENQI--VSD-GV 511 (889)
T ss_pred cchHHHHHHHHHHH---HHhhcc---cc-c----ceeEEEeeHHHHHHHHHH--------hccccccccceE--EEC-Cc
Confidence 35566666665553 111111 11 0 124469999999999988 555554443311 111 11
Q ss_pred hhhcchhHHHHHHHhhhhhhhhhcccccCCCCCCCccccceeeEEeecCCCC-CCCcCccc--cccCccEEEccCCCCCC
Q 017543 231 RFKENSEKLQTWRNALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKS-LKSLPAGI--HLEFLKELDLSGCSKLK 307 (369)
Q Consensus 231 ~~~~~~~~l~~W~~aL~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~-l~~lP~~i--~L~~L~~L~Ls~~~~l~ 307 (369)
.. .+.+++..|. +.+.+.. .++.+..++.. ...++|++|-+.+|.. +..++..+ .++.|++|||++|..+.
T Consensus 512 ~~-~~~~~~~~~~-~~rr~s~-~~~~~~~~~~~---~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~ 585 (889)
T KOG4658|consen 512 GL-SEIPQVKSWN-SVRRMSL-MNNKIEHIAGS---SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLS 585 (889)
T ss_pred Cc-cccccccchh-heeEEEE-eccchhhccCC---CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccC
Confidence 11 1255677774 3333333 33445555443 3455799999999842 67777765 79999999999999999
Q ss_pred cCCC-CCCCCCCCEEEeecCCCcccCccccCCCCCcEEecccCCCCCcCCccccCCCCCCCCC
Q 017543 308 RLPD-ISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRIR 369 (369)
Q Consensus 308 ~lP~-i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L~ 369 (369)
.+|+ |+.|.+|++|+|+++.|..||.++++|++|.+|++..+..+..+|..+..|++|+.|+
T Consensus 586 ~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~ 648 (889)
T KOG4658|consen 586 KLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLR 648 (889)
T ss_pred cCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEE
Confidence 9998 9999999999999999999999999999999999999887777766666688888763
No 4
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.65 E-value=3.6e-18 Score=145.12 Aligned_cols=127 Identities=26% Similarity=0.446 Sum_probs=104.9
Q ss_pred eeecCCCccccCchHHHHHHHHhhC--CcceEe-----ccCcchhHHHHHHHHHcceeeEEeccCCcccccccccceeeE
Q 017543 120 VPTAIPSEDTRDNFTSHLYSALSQK--SIETFI-----NRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLVKIL 192 (369)
Q Consensus 120 vFis~~~~d~r~~F~~~L~~aL~~~--gi~~~~-----~~G~~i~~~l~~~ie~S~i~ivv~S~~y~~S~~cl~ELv~i~ 192 (369)
|||||++.+.+..|+.+|..+|.++ |+++|+ ..|..+.+++.++|++|++.|+|||++|+.|.||+.|+..++
T Consensus 1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~ 80 (141)
T PF01582_consen 1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL 80 (141)
T ss_dssp EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence 8999999666889999999999999 999999 689999999999999999999999999999999999999999
Q ss_pred EeeeccC--eEEeeeeeccCCCCcc-CCCCCccccchhhhhhhhcc--hhHHHHHHHhh
Q 017543 193 QCKRVYG--QIVLPVFYGVDPAPVK-WPTGSYGDSFLKLEERFKEN--SEKLQTWRNAL 246 (369)
Q Consensus 193 ~~~~~~~--l~vlPiFy~V~pS~Vr-~q~g~fg~af~~~e~~~~~~--~~~l~~W~~aL 246 (369)
++....+ ..|+|+||++.+.++. .+.+.|+..+.........+ ......|+..+
T Consensus 81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~ 139 (141)
T PF01582_consen 81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLR 139 (141)
T ss_dssp HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHH
T ss_pred hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHh
Confidence 9877655 7999999999999999 67777776665555433322 45667787543
No 5
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.53 E-value=5e-15 Score=125.09 Aligned_cols=131 Identities=31% Similarity=0.495 Sum_probs=103.9
Q ss_pred CCCeeecCCC-ccccCchHHHHHHHHhhCCcceEe---ccCcchhHHHHHHHHHcceeeEEeccCCcccccccccceeeE
Q 017543 117 YEGVPTAIPS-EDTRDNFTSHLYSALSQKSIETFI---NRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLVKIL 192 (369)
Q Consensus 117 ~~dvFis~~~-~d~r~~F~~~L~~aL~~~gi~~~~---~~G~~i~~~l~~~ie~S~i~ivv~S~~y~~S~~cl~ELv~i~ 192 (369)
+|||||||++ +++...|+.+|..+|...|+.+|. ..|.....++.++|++|++.|+++|++|..|.||..|+..+.
T Consensus 1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~~~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a~ 80 (140)
T smart00255 1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLEEIDEAIEKSRIAIVVLSPNYAESEWCLDELVAAL 80 (140)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccccchHHHHHHHHHHCcEEEEEECcccccChhHHHHHHHHH
Confidence 3699999999 677789999999999999999999 344444448999999999999999999999999999998877
Q ss_pred Eeeec-cCeEEeeeeeccCCCCccCCCCCccccchhhhhhhhcchhHHHHHHHhhhh
Q 017543 193 QCKRV-YGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQTWRNALKE 248 (369)
Q Consensus 193 ~~~~~-~~l~vlPiFy~V~pS~Vr~q~g~fg~af~~~e~~~~~~~~~l~~W~~aL~~ 248 (369)
..... ....++||+++..|..+..+.+.+...+......+..+..+ ..|...+..
T Consensus 81 ~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~-~fW~~~~~~ 136 (140)
T smart00255 81 ENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKE-RFWKKALYA 136 (140)
T ss_pred HHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhH-HHHHHHHHH
Confidence 65433 45799999999988888888888887766553344333332 567765543
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.19 E-value=1.8e-12 Score=111.16 Aligned_cols=112 Identities=26% Similarity=0.327 Sum_probs=66.7
Q ss_pred hcccccCCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCC-cCCC-CCCCCCCCEEEeecCCCc
Q 017543 253 ACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLK-RLPD-ISSAANIEEMFLNGTAIE 329 (369)
Q Consensus 253 ~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~-~lP~-i~~L~~L~~L~Ls~n~l~ 329 (369)
..+.++++|.. +..+++|+.|++.-| .+..+|.++ .++.|++|||+.|+.-+ .+|. +--|+.|+.|.|+.|.++
T Consensus 64 ~nnqie~lp~~--issl~klr~lnvgmn-rl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe 140 (264)
T KOG0617|consen 64 SNNQIEELPTS--ISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE 140 (264)
T ss_pred ccchhhhcChh--hhhchhhhheecchh-hhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc
Confidence 34556666654 667777777777777 467777777 77777777777644321 2343 333444444444445555
Q ss_pred ccCccccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543 330 ELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI 368 (369)
Q Consensus 330 ~LP~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L 368 (369)
-||..+|+|++|+.|.+.+|. +-++|.+++.|+.|+.|
T Consensus 141 ~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lrel 178 (264)
T KOG0617|consen 141 ILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLREL 178 (264)
T ss_pred cCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHHH
Confidence 556666666666666666665 44566666665555443
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.11 E-value=5.8e-11 Score=130.35 Aligned_cols=121 Identities=21% Similarity=0.254 Sum_probs=82.0
Q ss_pred hhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEe
Q 017543 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFL 323 (369)
Q Consensus 246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~L 323 (369)
|+.+.+..+.....+|.. +.++++|++|+|++|...+.+|..+ ++++|+.|+|++|...+.+|. ++++++|++|+|
T Consensus 166 L~~L~L~~n~l~~~~p~~--~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 243 (968)
T PLN00113 166 LKVLDLGGNVLVGKIPNS--LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDL 243 (968)
T ss_pred CCEEECccCcccccCChh--hhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEEC
Confidence 333444343333344433 5667777777777775455667777 777777777777665566775 777777777777
Q ss_pred ecCCCc-ccCccccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543 324 NGTAIE-ELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI 368 (369)
Q Consensus 324 s~n~l~-~LP~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L 368 (369)
++|.+. .+|..+++|++|++|+|++|++.+.+|..+..+++|+.|
T Consensus 244 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 289 (968)
T PLN00113 244 VYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISL 289 (968)
T ss_pred cCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEE
Confidence 777765 677777777777777777777667777777777777654
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.08 E-value=2e-10 Score=128.12 Aligned_cols=119 Identities=35% Similarity=0.608 Sum_probs=101.5
Q ss_pred hhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccccccCccEEEccCCCCCCcCCCCCCCCCCCEEEeec
Q 017543 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNG 325 (369)
Q Consensus 246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~ 325 (369)
|+.+.+..|..+..+|.. ++++++|+.|++++|..++.+|..+.+++|+.|+|++|+.+..+|.+ .++|+.|+|++
T Consensus 780 L~~L~Ls~n~~l~~lP~s--i~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~ 855 (1153)
T PLN03210 780 LTRLFLSDIPSLVELPSS--IQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI--STNISDLNLSR 855 (1153)
T ss_pred chheeCCCCCCccccChh--hhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc--ccccCEeECCC
Confidence 444445555556667654 77899999999999988999998888999999999999999988874 36899999999
Q ss_pred CCCcccCccccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543 326 TAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI 368 (369)
Q Consensus 326 n~l~~LP~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L 368 (369)
|.|+++|.+++++++|+.|+|++|+.+..+|..+..|++|+.|
T Consensus 856 n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L 898 (1153)
T PLN03210 856 TGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETV 898 (1153)
T ss_pred CCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCee
Confidence 9999999999999999999999999999999988888777654
No 9
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.07 E-value=7.7e-12 Score=107.36 Aligned_cols=107 Identities=24% Similarity=0.327 Sum_probs=94.6
Q ss_pred hcccccCCCCCCCccccceeeEEeecCCCCC-CCcCccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCc
Q 017543 253 ACNIFTKTPNPSFSQHLNTLVVLNLRDCKSL-KSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIE 329 (369)
Q Consensus 253 ~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l-~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~ 329 (369)
+.+.+..+|.. ++.++.|++|+|.+|+.- ..+|..+ .++.|+.|.|++ +.++-+|. +|+|++|+.|.+..|.+-
T Consensus 87 gmnrl~~lprg--fgs~p~levldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~dvg~lt~lqil~lrdndll 163 (264)
T KOG0617|consen 87 GMNRLNILPRG--FGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPDVGKLTNLQILSLRDNDLL 163 (264)
T ss_pred chhhhhcCccc--cCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccCChhhhhhcceeEEeeccCchh
Confidence 34566667766 899999999999998432 3699988 999999999999 77888996 999999999999999999
Q ss_pred ccCccccCCCCCcEEecccCCCCCcCCccccCCC
Q 017543 330 ELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCR 363 (369)
Q Consensus 330 ~LP~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~ 363 (369)
+||.+||.|..|+.|.+.+|. +..+|.+++.+.
T Consensus 164 ~lpkeig~lt~lrelhiqgnr-l~vlppel~~l~ 196 (264)
T KOG0617|consen 164 SLPKEIGDLTRLRELHIQGNR-LTVLPPELANLD 196 (264)
T ss_pred hCcHHHHHHHHHHHHhcccce-eeecChhhhhhh
Confidence 999999999999999999998 899999998764
No 10
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.04 E-value=1.5e-10 Score=127.13 Aligned_cols=122 Identities=22% Similarity=0.290 Sum_probs=102.9
Q ss_pred hhhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEE
Q 017543 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMF 322 (369)
Q Consensus 245 aL~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~ 322 (369)
.|+.+....+.....+|.. ++.+++|+.|+|++|...+.+|..+ ++++|++|+|++|...+.+|. ++++++|++|+
T Consensus 189 ~L~~L~L~~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 266 (968)
T PLN00113 189 SLEFLTLASNQLVGQIPRE--LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLF 266 (968)
T ss_pred CCCeeeccCCCCcCcCChH--HcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEE
Confidence 3444555555544455543 7789999999999996556889888 999999999999877778887 99999999999
Q ss_pred eecCCCc-ccCccccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543 323 LNGTAIE-ELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI 368 (369)
Q Consensus 323 Ls~n~l~-~LP~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L 368 (369)
|++|.+. .+|.+++++++|++|+|++|++.+.+|..+..+++|+.|
T Consensus 267 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 313 (968)
T PLN00113 267 LYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEIL 313 (968)
T ss_pred CcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEE
Confidence 9999887 789999999999999999999888999999999888876
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.02 E-value=1.4e-11 Score=123.34 Aligned_cols=82 Identities=24% Similarity=0.406 Sum_probs=64.6
Q ss_pred CcCccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCcccCccccCCCCCcEEecccCCCCCcCCccccCC
Q 017543 285 SLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLC 362 (369)
Q Consensus 285 ~lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L 362 (369)
.+|.++ .|.+|+.+|||. |.+..+|+ +-++.+|+.|+||+|+|++|-..++...+|++|+|+.|+ +..||+.+.+|
T Consensus 213 N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~avcKL 290 (1255)
T KOG0444|consen 213 NIPTSLDDLHNLRDVDLSE-NNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQ-LTVLPDAVCKL 290 (1255)
T ss_pred cCCCchhhhhhhhhccccc-cCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccch-hccchHHHhhh
Confidence 356666 667777777775 66777887 778888888888888888888888888888888888888 78888888888
Q ss_pred CCCCCC
Q 017543 363 RNKCRI 368 (369)
Q Consensus 363 ~~L~~L 368 (369)
++|++|
T Consensus 291 ~kL~kL 296 (1255)
T KOG0444|consen 291 TKLTKL 296 (1255)
T ss_pred HHHHHH
Confidence 877765
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.97 E-value=2.2e-10 Score=109.71 Aligned_cols=98 Identities=21% Similarity=0.362 Sum_probs=60.3
Q ss_pred ccccCCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCccc
Q 017543 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEEL 331 (369)
Q Consensus 255 ~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~L 331 (369)
+.+..+|.+ .+.+..|+.|+++.| .+..+|..+ .+..|+.+-.++ +.++.+|+ +++|.+|..|||.+|.|..+
T Consensus 445 N~Ln~LP~e--~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~-nqi~~vd~~~l~nm~nL~tLDL~nNdlq~I 520 (565)
T KOG0472|consen 445 NLLNDLPEE--MGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASN-NQIGSVDPSGLKNMRNLTTLDLQNNDLQQI 520 (565)
T ss_pred chhhhcchh--hhhhhhhheeccccc-ccccchHHHhhHHHHHHHHhcc-ccccccChHHhhhhhhcceeccCCCchhhC
Confidence 344444443 344444555555555 355555554 333333333333 56677774 77788888888888888888
Q ss_pred CccccCCCCCcEEecccCCCCCcCCcc
Q 017543 332 PSSIECLYKLLHLDLEDCKSLKSLPSG 358 (369)
Q Consensus 332 P~~i~~L~~L~~L~Ls~n~~l~~lP~~ 358 (369)
|+.+|++++|++|+|.||++ . .|..
T Consensus 521 Pp~LgnmtnL~hLeL~gNpf-r-~Pr~ 545 (565)
T KOG0472|consen 521 PPILGNMTNLRHLELDGNPF-R-QPRH 545 (565)
T ss_pred ChhhccccceeEEEecCCcc-C-CCHH
Confidence 88888888888888888773 3 5543
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.97 E-value=2.2e-11 Score=121.87 Aligned_cols=111 Identities=26% Similarity=0.390 Sum_probs=65.3
Q ss_pred hcccccCCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCc-
Q 017543 253 ACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIE- 329 (369)
Q Consensus 253 ~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~- 329 (369)
+|+.+...|+. +-++.+|+.|+|++| .++.+-..+ ...+|..|+||. |.++.+|+ +++|+.|+.|.+.+|++.
T Consensus 230 S~N~Lp~vPec--ly~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSr-NQLt~LP~avcKL~kL~kLy~n~NkL~F 305 (1255)
T KOG0444|consen 230 SENNLPIVPEC--LYKLRNLRRLNLSGN-KITELNMTEGEWENLETLNLSR-NQLTVLPDAVCKLTKLTKLYANNNKLTF 305 (1255)
T ss_pred cccCCCcchHH--HhhhhhhheeccCcC-ceeeeeccHHHHhhhhhhcccc-chhccchHHHhhhHHHHHHHhccCcccc
Confidence 34444444443 344555566666665 355555555 455555566665 45566665 666666666666666543
Q ss_pred -ccCccccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543 330 -ELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI 368 (369)
Q Consensus 330 -~LP~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L 368 (369)
-||++||+|.+|+.+...+|+ +.-+|.++.++.+|++|
T Consensus 306 eGiPSGIGKL~~Levf~aanN~-LElVPEglcRC~kL~kL 344 (1255)
T KOG0444|consen 306 EGIPSGIGKLIQLEVFHAANNK-LELVPEGLCRCVKLQKL 344 (1255)
T ss_pred cCCccchhhhhhhHHHHhhccc-cccCchhhhhhHHHHHh
Confidence 566666666666666666655 66666666666666554
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.92 E-value=1.2e-10 Score=111.65 Aligned_cols=124 Identities=25% Similarity=0.331 Sum_probs=91.6
Q ss_pred hhHHHHHHHhhhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC--C
Q 017543 236 SEKLQTWRNALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD--I 312 (369)
Q Consensus 236 ~~~l~~W~~aL~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~--i 312 (369)
.+....|+ .++++... .+.++.+|.. ++.+..|..|+|+.| .+..+| +| .+..|+.|.++. |.++.+|. .
T Consensus 176 ~~~~i~m~-~L~~ld~~-~N~L~tlP~~--lg~l~~L~~LyL~~N-ki~~lP-ef~gcs~L~Elh~g~-N~i~~lpae~~ 248 (565)
T KOG0472|consen 176 PENHIAMK-RLKHLDCN-SNLLETLPPE--LGGLESLELLYLRRN-KIRFLP-EFPGCSLLKELHVGE-NQIEMLPAEHL 248 (565)
T ss_pred CHHHHHHH-HHHhcccc-hhhhhcCChh--hcchhhhHHHHhhhc-ccccCC-CCCccHHHHHHHhcc-cHHHhhHHHHh
Confidence 33344454 34433332 2567777766 788888888888888 588888 56 788888888886 77888885 4
Q ss_pred CCCCCCCEEEeecCCCcccCccccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543 313 SSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI 368 (369)
Q Consensus 313 ~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L 368 (369)
.+|.+|..|||..|+++++|.++..|.+|..||+++|. +..+|.++++| .|+.|
T Consensus 249 ~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L 302 (565)
T KOG0472|consen 249 KHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFL 302 (565)
T ss_pred cccccceeeeccccccccCchHHHHhhhhhhhcccCCc-cccCCcccccc-eeeeh
Confidence 47888888888888888888888888888888888777 78888888877 65544
No 15
>PLN03150 hypothetical protein; Provisional
Probab=98.90 E-value=2.1e-09 Score=112.57 Aligned_cols=92 Identities=24% Similarity=0.275 Sum_probs=83.3
Q ss_pred eeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCc-ccCccccCCCCCcEEecc
Q 017543 271 TLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIE-ELPSSIECLYKLLHLDLE 347 (369)
Q Consensus 271 ~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~-~LP~~i~~L~~L~~L~Ls 347 (369)
.++.|+|++|...+.+|..+ .|++|+.|+|++|...+.+|. ++.|++|+.|+|++|.+. .+|..+++|++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999996567899999 999999999999777779997 999999999999999998 899999999999999999
Q ss_pred cCCCCCcCCccccCC
Q 017543 348 DCKSLKSLPSGLFLC 362 (369)
Q Consensus 348 ~n~~l~~lP~~i~~L 362 (369)
+|++.+.+|..+..+
T Consensus 499 ~N~l~g~iP~~l~~~ 513 (623)
T PLN03150 499 GNSLSGRVPAALGGR 513 (623)
T ss_pred CCcccccCChHHhhc
Confidence 999999999987653
No 16
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=98.80 E-value=5.3e-10 Score=89.24 Aligned_cols=82 Identities=27% Similarity=0.413 Sum_probs=68.3
Q ss_pred eeecCCCccccCchHHHHHHHHhhCCcceEe----ccCcchhHHHHHHHHHcceeeEEeccCCcccccccccceeeEEee
Q 017543 120 VPTAIPSEDTRDNFTSHLYSALSQKSIETFI----NRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLVKILQCK 195 (369)
Q Consensus 120 vFis~~~~d~r~~F~~~L~~aL~~~gi~~~~----~~G~~i~~~l~~~ie~S~i~ivv~S~~y~~S~~cl~ELv~i~~~~ 195 (369)
|||||+++| ..++..|...|...|+.+|+ ..|+.+.+.+.++|++|+..|+++|++|..|.||..|+....
T Consensus 1 VFIS~~~~D--~~~a~~l~~~L~~~g~~v~~d~~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~--- 75 (102)
T PF13676_consen 1 VFISYSSED--REFAERLAERLESAGIRVFLDRDIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAW--- 75 (102)
T ss_dssp EEEEEEGGG--CCCHHHHHHHHHHTT--EE-GGEE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHH---
T ss_pred eEEEecCCc--HHHHHHHHHHHhhcCCEEEEEEeCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHH---
Confidence 899999999 45999999999999999999 678888889999999999999999999999999999987663
Q ss_pred eccCeEEeeeee
Q 017543 196 RVYGQIVLPVFY 207 (369)
Q Consensus 196 ~~~~l~vlPiFy 207 (369)
..+..++|+..
T Consensus 76 -~~~~~iipv~~ 86 (102)
T PF13676_consen 76 -KRGKPIIPVRL 86 (102)
T ss_dssp -CTSESEEEEEC
T ss_pred -HCCCEEEEEEE
Confidence 25557888874
No 17
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.70 E-value=1e-08 Score=89.94 Aligned_cols=97 Identities=25% Similarity=0.397 Sum_probs=44.1
Q ss_pred ccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC-C-CCCCCCCEEEeecCCCcccCc--cccCCCCCc
Q 017543 268 HLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-I-SSAANIEEMFLNGTAIEELPS--SIECLYKLL 342 (369)
Q Consensus 268 ~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i-~~L~~L~~L~Ls~n~l~~LP~--~i~~L~~L~ 342 (369)
.+.+|+.|+|++| .+..++. + .|+.|+.|++++ |.+..+++ + ..+++|+.|+|++|+|..+-. .+..+++|+
T Consensus 40 ~l~~L~~L~Ls~N-~I~~l~~-l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~ 116 (175)
T PF14580_consen 40 TLDKLEVLDLSNN-QITKLEG-LPGLPRLKTLDLSN-NRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLR 116 (175)
T ss_dssp T-TT--EEE-TTS---S--TT-----TT--EEE--S-S---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--
T ss_pred hhcCCCEEECCCC-CCccccC-ccChhhhhhcccCC-CCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcc
Confidence 4678888888888 5777763 5 788888888887 67777765 4 368888888888888875543 457788888
Q ss_pred EEecccCCCCCcCCc----cccCCCCCCCC
Q 017543 343 HLDLEDCKSLKSLPS----GLFLCRNKCRI 368 (369)
Q Consensus 343 ~L~Ls~n~~l~~lP~----~i~~L~~L~~L 368 (369)
+|+|.+|+ +..-+. -|..+|+|+.|
T Consensus 117 ~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~L 145 (175)
T PF14580_consen 117 VLSLEGNP-VCEKKNYRLFVIYKLPSLKVL 145 (175)
T ss_dssp EEE-TT-G-GGGSTTHHHHHHHH-TT-SEE
T ss_pred eeeccCCc-ccchhhHHHHHHHHcChhhee
Confidence 88888888 444442 24556666554
No 18
>PLN03150 hypothetical protein; Provisional
Probab=98.66 E-value=2.3e-08 Score=104.74 Aligned_cols=92 Identities=21% Similarity=0.342 Sum_probs=81.3
Q ss_pred ccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCc-ccCccccCC-CCC
Q 017543 266 SQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIE-ELPSSIECL-YKL 341 (369)
Q Consensus 266 ~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~-~LP~~i~~L-~~L 341 (369)
+..+++|+.|+|++|...+.+|..+ .+++|+.|+|++|...+.+|+ +++|++|+.|+|++|.+. .+|..++.+ .++
T Consensus 438 i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~ 517 (623)
T PLN03150 438 ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHR 517 (623)
T ss_pred HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccC
Confidence 6678999999999996556899989 999999999999877788998 999999999999999998 999999764 578
Q ss_pred cEEecccCCCCCcCCc
Q 017543 342 LHLDLEDCKSLKSLPS 357 (369)
Q Consensus 342 ~~L~Ls~n~~l~~lP~ 357 (369)
..+++.+|..++.+|.
T Consensus 518 ~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 518 ASFNFTDNAGLCGIPG 533 (623)
T ss_pred ceEEecCCccccCCCC
Confidence 8999999987777664
No 19
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.60 E-value=6e-09 Score=96.76 Aligned_cols=122 Identities=26% Similarity=0.333 Sum_probs=72.6
Q ss_pred HHHHHHHhhhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC-CCCC
Q 017543 238 KLQTWRNALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSA 315 (369)
Q Consensus 238 ~l~~W~~aL~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L 315 (369)
.+..|. +|+++.+.. +.+..+.+. ..-++.++.|+++.| .+..+.. + .|.+|+.||||+ |.+..+-. -.+|
T Consensus 279 ~~dTWq-~LtelDLS~-N~I~~iDES--vKL~Pkir~L~lS~N-~i~~v~n-La~L~~L~~LDLS~-N~Ls~~~Gwh~KL 351 (490)
T KOG1259|consen 279 SADTWQ-ELTELDLSG-NLITQIDES--VKLAPKLRRLILSQN-RIRTVQN-LAELPQLQLLDLSG-NLLAECVGWHLKL 351 (490)
T ss_pred ecchHh-hhhhccccc-cchhhhhhh--hhhccceeEEecccc-ceeeehh-hhhcccceEeeccc-chhHhhhhhHhhh
Confidence 355676 566665543 555555443 445677888888887 4666555 4 777888888887 55555544 2345
Q ss_pred CCCCEEEeecCCCcccCccccCCCCCcEEecccCCCCCcCC--ccccCCCCCCCC
Q 017543 316 ANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLP--SGLFLCRNKCRI 368 (369)
Q Consensus 316 ~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L~Ls~n~~l~~lP--~~i~~L~~L~~L 368 (369)
-|++.|.|++|.|+.| .++++|.+|..||+++|+ +..+- .+|++|+.|.+|
T Consensus 352 GNIKtL~La~N~iE~L-SGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l 404 (490)
T KOG1259|consen 352 GNIKTLKLAQNKIETL-SGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETL 404 (490)
T ss_pred cCEeeeehhhhhHhhh-hhhHhhhhheeccccccc-hhhHHHhcccccccHHHHH
Confidence 5666666666666655 346666666666666665 33333 245555555443
No 20
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.58 E-value=4.4e-08 Score=70.60 Aligned_cols=57 Identities=32% Similarity=0.481 Sum_probs=45.9
Q ss_pred cCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCcccCc-cccCCCCCcEEecccCC
Q 017543 293 EFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPS-SIECLYKLLHLDLEDCK 350 (369)
Q Consensus 293 ~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~LP~-~i~~L~~L~~L~Ls~n~ 350 (369)
++|++|++++ +.+..+|. +..+++|++|+|++|.|+.+|. .+..|++|++|++++|+
T Consensus 1 p~L~~L~l~~-n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSN-NKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETS-STESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCC-CCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4678888887 46778884 7888888888888888888865 46888888888888886
No 21
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.54 E-value=3.6e-09 Score=105.40 Aligned_cols=106 Identities=28% Similarity=0.386 Sum_probs=93.7
Q ss_pred hcccccCCCCCCCccccceeeEEeecCCCCCCCcCccccccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCccc
Q 017543 253 ACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEEL 331 (369)
Q Consensus 253 ~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~~L 331 (369)
..+.+..+|.+ ++++..|+.|+|+.| .+..+|..+-.--|++|.+++ |+++.+|+ |+.+..|..||.+.|.|.++
T Consensus 106 y~n~~r~ip~~--i~~L~~lt~l~ls~N-qlS~lp~~lC~lpLkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~nei~sl 181 (722)
T KOG0532|consen 106 YHNCIRTIPEA--ICNLEALTFLDLSSN-QLSHLPDGLCDLPLKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKNEIQSL 181 (722)
T ss_pred Hhccceecchh--hhhhhHHHHhhhccc-hhhcCChhhhcCcceeEEEec-CccccCCcccccchhHHHhhhhhhhhhhc
Confidence 34556677766 789999999999999 699999999444499999997 88999997 99999999999999999999
Q ss_pred CccccCCCCCcEEecccCCCCCcCCccccCCC
Q 017543 332 PSSIECLYKLLHLDLEDCKSLKSLPSGLFLCR 363 (369)
Q Consensus 332 P~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~ 363 (369)
|..++.|.+|+.|.+..|+ +..+|.++..|+
T Consensus 182 psql~~l~slr~l~vrRn~-l~~lp~El~~Lp 212 (722)
T KOG0532|consen 182 PSQLGYLTSLRDLNVRRNH-LEDLPEELCSLP 212 (722)
T ss_pred hHHhhhHHHHHHHHHhhhh-hhhCCHHHhCCc
Confidence 9999999999999999999 888999988765
No 22
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.47 E-value=6.8e-08 Score=84.80 Aligned_cols=98 Identities=21% Similarity=0.253 Sum_probs=32.5
Q ss_pred cccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccCccc-cCCCCCcEE
Q 017543 267 QHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSI-ECLYKLLHL 344 (369)
Q Consensus 267 ~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP~~i-~~L~~L~~L 344 (369)
.+...++.|+|.+| .+..+..-- .+.+|+.|+|++ |.+..++.+..|++|+.|++++|.|++++..+ ..+++|++|
T Consensus 16 ~n~~~~~~L~L~~n-~I~~Ie~L~~~l~~L~~L~Ls~-N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 16 NNPVKLRELNLRGN-QISTIENLGATLDKLEVLDLSN-NQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TT-S--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred cccccccccccccc-ccccccchhhhhcCCCEEECCC-CCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence 44556788888888 577665332 578888999998 67888887888888999999999988887666 468889999
Q ss_pred ecccCCCCCcCC--ccccCCCCCCC
Q 017543 345 DLEDCKSLKSLP--SGLFLCRNKCR 367 (369)
Q Consensus 345 ~Ls~n~~l~~lP--~~i~~L~~L~~ 367 (369)
++++|+ +..+- ..+..+++|+.
T Consensus 94 ~L~~N~-I~~l~~l~~L~~l~~L~~ 117 (175)
T PF14580_consen 94 YLSNNK-ISDLNELEPLSSLPKLRV 117 (175)
T ss_dssp E-TTS----SCCCCGGGGG-TT--E
T ss_pred ECcCCc-CCChHHhHHHHcCCCcce
Confidence 998887 44442 23344455543
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.44 E-value=6.8e-08 Score=104.13 Aligned_cols=85 Identities=32% Similarity=0.429 Sum_probs=74.9
Q ss_pred CCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCC-CcccCccccCCCC
Q 017543 264 SFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTA-IEELPSSIECLYK 340 (369)
Q Consensus 264 ~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~-l~~LP~~i~~L~~ 340 (369)
.|+..++.|++|||++|..++.+|..| +|.+||+|+|++ +.+..+|. +++|..|.+||+..+. +..+|..+..|.+
T Consensus 565 ~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~ 643 (889)
T KOG4658|consen 565 EFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQS 643 (889)
T ss_pred HHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhheeccccccccccccchhhhccc
Confidence 346679999999999999999999999 899999999999 88999998 9999999999999984 5566665667999
Q ss_pred CcEEecccC
Q 017543 341 LLHLDLEDC 349 (369)
Q Consensus 341 L~~L~Ls~n 349 (369)
|++|.+...
T Consensus 644 Lr~L~l~~s 652 (889)
T KOG4658|consen 644 LRVLRLPRS 652 (889)
T ss_pred ccEEEeecc
Confidence 999998754
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.42 E-value=2.1e-08 Score=100.00 Aligned_cols=103 Identities=26% Similarity=0.391 Sum_probs=70.0
Q ss_pred hcccccCCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCcc
Q 017543 253 ACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEE 330 (369)
Q Consensus 253 ~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~~ 330 (369)
..+.++.+|++ ++.+..|..|+.+.| .+..+|..+ .|.+|+.|++.. |.+..+|+ ++.|+ |..||+|+|+|..
T Consensus 151 sNNkl~~lp~~--ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrR-n~l~~lp~El~~Lp-Li~lDfScNkis~ 225 (722)
T KOG0532|consen 151 SNNKLTSLPEE--IGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEELCSLP-LIRLDFSCNKISY 225 (722)
T ss_pred ecCccccCCcc--cccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhh-hhhhhCCHHHhCCc-eeeeecccCceee
Confidence 34455555555 555666666666666 466666666 666777777776 44556664 66554 7778888888888
Q ss_pred cCccccCCCCCcEEecccCCCCCcCCccccC
Q 017543 331 LPSSIECLYKLLHLDLEDCKSLKSLPSGLFL 361 (369)
Q Consensus 331 LP~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~ 361 (369)
||-.|.+|+.|++|-|.+|. +.+-|..|.-
T Consensus 226 iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~ 255 (722)
T KOG0532|consen 226 LPVDFRKMRHLQVLQLENNP-LQSPPAQICE 255 (722)
T ss_pred cchhhhhhhhheeeeeccCC-CCCChHHHHh
Confidence 88888888888888888777 7777776653
No 25
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.41 E-value=2.2e-07 Score=66.94 Aligned_cols=57 Identities=28% Similarity=0.445 Sum_probs=50.8
Q ss_pred ceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCC
Q 017543 270 NTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAI 328 (369)
Q Consensus 270 ~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l 328 (369)
++|+.|++++| .+..+|... .+++|++|++++ +.+..+|. +..|++|++|++++|+|
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 46899999999 699999766 899999999997 67888885 89999999999999975
No 26
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.41 E-value=3.8e-08 Score=102.95 Aligned_cols=106 Identities=26% Similarity=0.389 Sum_probs=90.2
Q ss_pred ccccCCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCcccC
Q 017543 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELP 332 (369)
Q Consensus 255 ~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~~LP 332 (369)
+.+-..|- .|....-+|..|++++| .+..+|..+ .+.+|+.|+++. |.+..+|. ++++.+|++|+|.+|.+..+|
T Consensus 31 N~~l~~pl-~~~~~~v~L~~l~lsnn-~~~~fp~~it~l~~L~~ln~s~-n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP 107 (1081)
T KOG0618|consen 31 NSLLSRPL-EFVEKRVKLKSLDLSNN-QISSFPIQITLLSHLRQLNLSR-NYIRSVPSSCSNMRNLQYLNLKNNRLQSLP 107 (1081)
T ss_pred cccccCch-HHhhheeeeEEeecccc-ccccCCchhhhHHHHhhcccch-hhHhhCchhhhhhhcchhheeccchhhcCc
Confidence 33444442 34444556999999999 699999999 999999999997 88999997 999999999999999999999
Q ss_pred ccccCCCCCcEEecccCCCCCcCCccccCCCC
Q 017543 333 SSIECLYKLLHLDLEDCKSLKSLPSGLFLCRN 364 (369)
Q Consensus 333 ~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~ 364 (369)
.++..+++|++|+++.|+ ++.+|.-|..++.
T Consensus 108 ~~~~~lknl~~LdlS~N~-f~~~Pl~i~~lt~ 138 (1081)
T KOG0618|consen 108 ASISELKNLQYLDLSFNH-FGPIPLVIEVLTA 138 (1081)
T ss_pred hhHHhhhcccccccchhc-cCCCchhHHhhhH
Confidence 999999999999999998 8899987765543
No 27
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.32 E-value=5.1e-07 Score=60.68 Aligned_cols=40 Identities=28% Similarity=0.473 Sum_probs=29.1
Q ss_pred CCCCEEEeecCCCcccCccccCCCCCcEEecccCCCCCcCC
Q 017543 316 ANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLP 356 (369)
Q Consensus 316 ~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L~Ls~n~~l~~lP 356 (369)
++|++|+|++|+|+.+|..|++|++|++|++++|+ +..+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 46788888888888888778888888888888887 54443
No 28
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.29 E-value=1.2e-07 Score=99.26 Aligned_cols=82 Identities=33% Similarity=0.461 Sum_probs=68.9
Q ss_pred ccccceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCcccCccccCCCCCc
Q 017543 266 SQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSSIECLYKLL 342 (369)
Q Consensus 266 ~~~l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~ 342 (369)
+.++.+|++|+|++| .+.++|... +|..|+.|+||+ |+++.||+ +.++..|++|-..+|.|..+| ++.+|+.|+
T Consensus 379 l~~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~ 455 (1081)
T KOG0618|consen 379 LVNFKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLK 455 (1081)
T ss_pred hccccceeeeeeccc-ccccCCHHHHhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcce
Confidence 456788999999998 588888877 788899999998 78888887 888888888888888888888 788888888
Q ss_pred EEecccCC
Q 017543 343 HLDLEDCK 350 (369)
Q Consensus 343 ~L~Ls~n~ 350 (369)
.+||+.|+
T Consensus 456 ~lDlS~N~ 463 (1081)
T KOG0618|consen 456 VLDLSCNN 463 (1081)
T ss_pred EEecccch
Confidence 88888776
No 29
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.22 E-value=1.5e-06 Score=92.51 Aligned_cols=103 Identities=23% Similarity=0.386 Sum_probs=70.2
Q ss_pred hhhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccccccCccEEEccCCCCCCcCCC-CCCCCCCCEEEe
Q 017543 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFL 323 (369)
Q Consensus 245 aL~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~L 323 (369)
.|+.+.... +.+..+|.. + ..+|+.|+|++| .+..+|..+ ..+|+.|+|++ +.+..+|+ +. .+|+.|+|
T Consensus 221 nL~~L~Ls~-N~LtsLP~~--l--~~~L~~L~Ls~N-~L~~LP~~l-~s~L~~L~Ls~-N~L~~LP~~l~--~sL~~L~L 290 (754)
T PRK15370 221 NIKTLYANS-NQLTSIPAT--L--PDTIQEMELSIN-RITELPERL-PSALQSLDLFH-NKISCLPENLP--EELRYLSV 290 (754)
T ss_pred CCCEEECCC-CccccCChh--h--hccccEEECcCC-ccCcCChhH-hCCCCEEECcC-CccCccccccC--CCCcEEEC
Confidence 344444443 445566542 2 246888888888 477777765 24688888886 56777886 54 47888888
Q ss_pred ecCCCcccCccccCCCCCcEEecccCCCCCcCCcccc
Q 017543 324 NGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLF 360 (369)
Q Consensus 324 s~n~l~~LP~~i~~L~~L~~L~Ls~n~~l~~lP~~i~ 360 (369)
++|+|+.+|..+. .+|++|+|++|+ +..+|..+.
T Consensus 291 s~N~Lt~LP~~lp--~sL~~L~Ls~N~-Lt~LP~~l~ 324 (754)
T PRK15370 291 YDNSIRTLPAHLP--SGITHLNVQSNS-LTALPETLP 324 (754)
T ss_pred CCCccccCcccch--hhHHHHHhcCCc-cccCCcccc
Confidence 8888888887653 468888888887 566776543
No 30
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.20 E-value=1.2e-06 Score=93.06 Aligned_cols=83 Identities=27% Similarity=0.289 Sum_probs=53.8
Q ss_pred eeeEEeecCCCCCCCcCccccccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccCccccCCCCCcEEecccCC
Q 017543 271 TLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCK 350 (369)
Q Consensus 271 ~L~~L~L~~n~~l~~lP~~i~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L~Ls~n~ 350 (369)
+|+.|++++| .+..+|.. ..+|+.|++++ |.+..+|.+ ..+|+.|+|++|+|+.||.++++|.+|+.|+|++|+
T Consensus 383 ~L~~LdLs~N-~Lt~LP~l--~s~L~~LdLS~-N~LssIP~l--~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 383 GLKELIVSGN-RLTSLPVL--PSELKELMVSG-NRLTSLPML--PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred ccceEEecCC-cccCCCCc--ccCCCEEEccC-CcCCCCCcc--hhhhhhhhhccCcccccChHHhhccCCCeEECCCCC
Confidence 4555555555 35555542 24566666666 445566652 235667777777787888888888888888888888
Q ss_pred CCCcCCccc
Q 017543 351 SLKSLPSGL 359 (369)
Q Consensus 351 ~l~~lP~~i 359 (369)
+.+..|..+
T Consensus 457 Ls~~~~~~L 465 (788)
T PRK15387 457 LSERTLQAL 465 (788)
T ss_pred CCchHHHHH
Confidence 766666655
No 31
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.20 E-value=1.1e-06 Score=88.35 Aligned_cols=109 Identities=27% Similarity=0.415 Sum_probs=64.4
Q ss_pred ccccCCCCCCCccccceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCcc
Q 017543 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEE 330 (369)
Q Consensus 255 ~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~ 330 (369)
+.++.+|. |.....+|+.|+|.+| .+.++-.+- -++.|+.||||. |.+.++|. +..-.+|++|+|++|.|+.
T Consensus 112 N~Lt~IP~--f~~~sghl~~L~L~~N-~I~sv~se~L~~l~alrslDLSr-N~is~i~~~sfp~~~ni~~L~La~N~It~ 187 (873)
T KOG4194|consen 112 NELTRIPR--FGHESGHLEKLDLRHN-LISSVTSEELSALPALRSLDLSR-NLISEIPKPSFPAKVNIKKLNLASNRITT 187 (873)
T ss_pred chhhhccc--ccccccceeEEeeecc-ccccccHHHHHhHhhhhhhhhhh-chhhcccCCCCCCCCCceEEeeccccccc
Confidence 44555553 2444455667777766 355444332 466667777776 55666663 5555667777777776666
Q ss_pred cCc-cccCCCCCcEEecccCCCCCcCCccccC-CCCCCCC
Q 017543 331 LPS-SIECLYKLLHLDLEDCKSLKSLPSGLFL-CRNKCRI 368 (369)
Q Consensus 331 LP~-~i~~L~~L~~L~Ls~n~~l~~lP~~i~~-L~~L~~L 368 (369)
+-. .+..|.+|-.|.|++|. +..||.-+++ |++|+.|
T Consensus 188 l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~L 226 (873)
T KOG4194|consen 188 LETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESL 226 (873)
T ss_pred cccccccccchheeeecccCc-ccccCHHHhhhcchhhhh
Confidence 543 35666666666666666 6666655444 6655544
No 32
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.15 E-value=3.7e-07 Score=91.60 Aligned_cols=91 Identities=27% Similarity=0.377 Sum_probs=53.5
Q ss_pred ccCCCCCCCccccceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCC-C-CCCCCCCCEEEeecCCCcccC
Q 017543 257 FTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLP-D-ISSAANIEEMFLNGTAIEELP 332 (369)
Q Consensus 257 l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP-~-i~~L~~L~~L~Ls~n~l~~LP 332 (369)
+..+.+..|. .+.+++.|+|..| .+..+-.+. +|+.|+.|+||. |.+..|- + |.-++.|+.|+|++|.|++||
T Consensus 257 I~kL~DG~Fy-~l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~L~lS~-NaI~rih~d~WsftqkL~~LdLs~N~i~~l~ 333 (873)
T KOG4194|consen 257 ISKLDDGAFY-GLEKMEHLNLETN-RLQAVNEGWLFGLTSLEQLDLSY-NAIQRIHIDSWSFTQKLKELDLSSNRITRLD 333 (873)
T ss_pred cccccCccee-eecccceeecccc-hhhhhhcccccccchhhhhccch-hhhheeecchhhhcccceeEeccccccccCC
Confidence 3344443333 4666777777777 466555555 677777777776 4455443 3 666677777777777777665
Q ss_pred cc-ccCCCCCcEEecccCC
Q 017543 333 SS-IECLYKLLHLDLEDCK 350 (369)
Q Consensus 333 ~~-i~~L~~L~~L~Ls~n~ 350 (369)
++ +..|..|+.|+|++|.
T Consensus 334 ~~sf~~L~~Le~LnLs~Ns 352 (873)
T KOG4194|consen 334 EGSFRVLSQLEELNLSHNS 352 (873)
T ss_pred hhHHHHHHHhhhhcccccc
Confidence 43 4444445555554444
No 33
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.15 E-value=2.8e-06 Score=90.27 Aligned_cols=90 Identities=31% Similarity=0.453 Sum_probs=54.7
Q ss_pred eeeEEeecCCCCCCCcCccc-cc-----------------cCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccC
Q 017543 271 TLVVLNLRDCKSLKSLPAGI-HL-----------------EFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELP 332 (369)
Q Consensus 271 ~L~~L~L~~n~~l~~lP~~i-~L-----------------~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP 332 (369)
+|+.|+|++| .+..+|... .| .+|+.|+|++ |.+..+|.+ ..+|+.|+|++|.|..+|
T Consensus 343 ~Lq~LdLS~N-~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~-N~Lt~LP~l--~s~L~~LdLS~N~LssIP 418 (788)
T PRK15387 343 GLQELSVSDN-QLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSG-NRLTSLPVL--PSELKELMVSGNRLTSLP 418 (788)
T ss_pred ccceEecCCC-ccCCCCCCCcccceehhhccccccCcccccccceEEecC-CcccCCCCc--ccCCCEEEccCCcCCCCC
Confidence 5677777776 466666422 11 2345555554 344445542 235666666666666666
Q ss_pred ccccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543 333 SSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI 368 (369)
Q Consensus 333 ~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L 368 (369)
.. ..+|+.|++++|+ ++.||..+.++++|..|
T Consensus 419 ~l---~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~L 450 (788)
T PRK15387 419 ML---PSGLLSLSVYRNQ-LTRLPESLIHLSSETTV 450 (788)
T ss_pred cc---hhhhhhhhhccCc-ccccChHHhhccCCCeE
Confidence 53 2356778888877 67888888888777654
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.13 E-value=9.5e-07 Score=87.35 Aligned_cols=110 Identities=35% Similarity=0.462 Sum_probs=75.3
Q ss_pred cccccCCCCCCCccccc-eeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCcc
Q 017543 254 CNIFTKTPNPSFSQHLN-TLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEE 330 (369)
Q Consensus 254 ~~~l~~~p~~~~~~~l~-~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~~ 330 (369)
.+.+..++.. ...+. +|+.|++++| .+..+|..+ .++.|+.|++++ +.+..+|. .+.+++|+.|++++|++..
T Consensus 125 ~n~i~~i~~~--~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~~~L~~L~ls~N~i~~ 200 (394)
T COG4886 125 NNNITDIPPL--IGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSF-NDLSDLPKLLSNLSNLNNLDLSGNKISD 200 (394)
T ss_pred CcccccCccc--cccchhhccccccccc-chhhhhhhhhccccccccccCC-chhhhhhhhhhhhhhhhheeccCCcccc
Confidence 3445555443 33443 7778888777 577777666 778888888887 56777776 5577778888888888888
Q ss_pred cCccccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543 331 LPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI 368 (369)
Q Consensus 331 LP~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L 368 (369)
+|..++.+..|+.|.+++|. ...+|..+.++.++..|
T Consensus 201 l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l 237 (394)
T COG4886 201 LPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGL 237 (394)
T ss_pred CchhhhhhhhhhhhhhcCCc-ceecchhhhhccccccc
Confidence 88777777778888887775 45566666666555443
No 35
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.12 E-value=3.7e-06 Score=89.46 Aligned_cols=101 Identities=23% Similarity=0.395 Sum_probs=74.9
Q ss_pred hhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccccccCccEEEccCCCCCCcCCC-CCCCCCCCEEEee
Q 017543 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLN 324 (369)
Q Consensus 246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls 324 (369)
+..+.+ .++.+..+|.. ...+|+.|++++| .+..+|..+ ..+|+.|+|++ +.+..+|. +. .+|+.|+|+
T Consensus 201 L~~L~L-s~N~LtsLP~~----l~~nL~~L~Ls~N-~LtsLP~~l-~~~L~~L~Ls~-N~L~~LP~~l~--s~L~~L~Ls 270 (754)
T PRK15370 201 ITTLIL-DNNELKSLPEN----LQGNIKTLYANSN-QLTSIPATL-PDTIQEMELSI-NRITELPERLP--SALQSLDLF 270 (754)
T ss_pred CcEEEe-cCCCCCcCChh----hccCCCEEECCCC-ccccCChhh-hccccEEECcC-CccCcCChhHh--CCCCEEECc
Confidence 333433 34566777653 2357889999988 588888765 23688999998 45778886 54 579999999
Q ss_pred cCCCcccCccccCCCCCcEEecccCCCCCcCCccc
Q 017543 325 GTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGL 359 (369)
Q Consensus 325 ~n~l~~LP~~i~~L~~L~~L~Ls~n~~l~~lP~~i 359 (369)
+|+|..+|..+. .+|++|+|++|+ +..+|..+
T Consensus 271 ~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~l 302 (754)
T PRK15370 271 HNKISCLPENLP--EELRYLSVYDNS-IRTLPAHL 302 (754)
T ss_pred CCccCccccccC--CCCcEEECCCCc-cccCcccc
Confidence 999999998774 589999999987 67788654
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.12 E-value=2.9e-07 Score=85.73 Aligned_cols=89 Identities=25% Similarity=0.232 Sum_probs=77.2
Q ss_pred ccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccC--ccccCCCCCc
Q 017543 266 SQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELP--SSIECLYKLL 342 (369)
Q Consensus 266 ~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP--~~i~~L~~L~ 342 (369)
+..+.+|+.|+|++| .+.++-..- +|-+++.|.|++ |.++.+..+++|.+|.+||+++|+|+.+- .+||+|+.|+
T Consensus 325 La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~La~-N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE 402 (490)
T KOG1259|consen 325 LAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKLAQ-NKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLE 402 (490)
T ss_pred hhhcccceEeecccc-hhHhhhhhHhhhcCEeeeehhh-hhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHH
Confidence 567899999999999 577766444 899999999999 88999988999999999999999999774 5799999999
Q ss_pred EEecccCCCCCcCCc
Q 017543 343 HLDLEDCKSLKSLPS 357 (369)
Q Consensus 343 ~L~Ls~n~~l~~lP~ 357 (369)
+|.|.+|+ +..+|+
T Consensus 403 ~l~L~~NP-l~~~vd 416 (490)
T KOG1259|consen 403 TLRLTGNP-LAGSVD 416 (490)
T ss_pred HHhhcCCC-ccccch
Confidence 99999999 666653
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.05 E-value=1.4e-06 Score=86.18 Aligned_cols=109 Identities=35% Similarity=0.448 Sum_probs=80.7
Q ss_pred ccccCCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCcccC
Q 017543 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELP 332 (369)
Q Consensus 255 ~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~~LP 332 (369)
+.+..+|.+ +..+++|+.|++++| .+..+|... .++.|+.|++++ +.+..+|. +..+.+|++|.+++|.+..+|
T Consensus 150 N~i~~l~~~--~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~ls~-N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~ 225 (394)
T COG4886 150 NKIESLPSP--LRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLDLSG-NKISDLPPEIELLSALEELDLSNNSIIELL 225 (394)
T ss_pred cchhhhhhh--hhccccccccccCCc-hhhhhhhhhhhhhhhhheeccC-CccccCchhhhhhhhhhhhhhcCCcceecc
Confidence 445555433 567788888888888 578888777 788888888887 67788886 566777888888888777777
Q ss_pred ccccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543 333 SSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI 368 (369)
Q Consensus 333 ~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L 368 (369)
..+.++++|..|.+.+|+ +..+|..+..+++|+.|
T Consensus 226 ~~~~~~~~l~~l~l~~n~-~~~~~~~~~~l~~l~~L 260 (394)
T COG4886 226 SSLSNLKNLSGLELSNNK-LEDLPESIGNLSNLETL 260 (394)
T ss_pred hhhhhcccccccccCCce-eeeccchhcccccccee
Confidence 778888888888877776 55667777777666554
No 38
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.00 E-value=4.4e-06 Score=56.13 Aligned_cols=40 Identities=33% Similarity=0.580 Sum_probs=31.9
Q ss_pred cCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCcccCc
Q 017543 293 EFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPS 333 (369)
Q Consensus 293 ~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~~LP~ 333 (369)
++|++|+|++ +.+..+|. +++|++|+.|++++|+|+.+|.
T Consensus 1 ~~L~~L~l~~-N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSN-NQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETS-SS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccC-CCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 4688888888 67888888 9999999999999999887764
No 39
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.90 E-value=1.2e-06 Score=73.10 Aligned_cols=89 Identities=19% Similarity=0.299 Sum_probs=78.5
Q ss_pred ccceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCcccCccccCCCCCcEE
Q 017543 268 HLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSSIECLYKLLHL 344 (369)
Q Consensus 268 ~l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L 344 (369)
....|...+|++| .++.+|+.+ ..+.++.|+|++ |.+..+|+ +..|+.|+.|+++.|.+...|.-|-.|.+|-.|
T Consensus 51 ~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 51 KGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDML 128 (177)
T ss_pred CCceEEEEecccc-hhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHh
Confidence 4567888899999 699999988 677999999998 88999997 999999999999999999999999889999999
Q ss_pred ecccCCCCCcCCccc
Q 017543 345 DLEDCKSLKSLPSGL 359 (369)
Q Consensus 345 ~Ls~n~~l~~lP~~i 359 (369)
+..+|. ...||-.+
T Consensus 129 ds~~na-~~eid~dl 142 (177)
T KOG4579|consen 129 DSPENA-RAEIDVDL 142 (177)
T ss_pred cCCCCc-cccCcHHH
Confidence 998887 77777554
No 40
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.88 E-value=2e-05 Score=77.71 Aligned_cols=102 Identities=25% Similarity=0.528 Sum_probs=69.1
Q ss_pred HHHHHHHhhhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccccccCccEEEccCCCCCCcCCCCCCCCC
Q 017543 238 KLQTWRNALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAAN 317 (369)
Q Consensus 238 ~l~~W~~aL~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i~L~~L~~L~Ls~~~~l~~lP~i~~L~~ 317 (369)
++..| ..++.+.+..| .+..+|. + ..+|+.|.+++|..+..+|..+ ..+|++|++++|..+..+|+ +
T Consensus 47 r~~~~-~~l~~L~Is~c-~L~sLP~---L--P~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP~-----s 113 (426)
T PRK15386 47 QIEEA-RASGRLYIKDC-DIESLPV---L--PNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGLPE-----S 113 (426)
T ss_pred HHHHh-cCCCEEEeCCC-CCcccCC---C--CCCCcEEEccCCCCcccCCchh-hhhhhheEccCccccccccc-----c
Confidence 35555 34556666666 4666652 1 2468899999988888888655 35788999998877777774 3
Q ss_pred CCEEEeecCC---CcccCccccCC------------------CCCcEEecccCCCC
Q 017543 318 IEEMFLNGTA---IEELPSSIECL------------------YKLLHLDLEDCKSL 352 (369)
Q Consensus 318 L~~L~Ls~n~---l~~LP~~i~~L------------------~~L~~L~Ls~n~~l 352 (369)
|+.|+++++. |..||.+|..| .+|++|++.+|..+
T Consensus 114 Le~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i 169 (426)
T PRK15386 114 VRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI 169 (426)
T ss_pred cceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc
Confidence 5666666553 56777777655 26888888887743
No 41
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.85 E-value=7.3e-07 Score=85.78 Aligned_cols=112 Identities=22% Similarity=0.284 Sum_probs=83.7
Q ss_pred cccccCCCCCCCccccceeeEEeecCCCCCCCc-Cccc-cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCc
Q 017543 254 CNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSL-PAGI-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIE 329 (369)
Q Consensus 254 ~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~l-P~~i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~ 329 (369)
-|.+..+|... ++.+++|+.|+|++| .++.+ |..+ .|.+|..|-+.++|+|+.+|. +++|..|+.|.+.-|++.
T Consensus 76 qN~I~~iP~~a-F~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~ 153 (498)
T KOG4237|consen 76 QNQISSIPPGA-FKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHIN 153 (498)
T ss_pred cCCcccCChhh-ccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhc
Confidence 36677777654 467888888888888 46665 4445 788888888888788888884 888888888888888888
Q ss_pred ccCc-cccCCCCCcEEecccCCCCCcCCc-cccCCCCCCCC
Q 017543 330 ELPS-SIECLYKLLHLDLEDCKSLKSLPS-GLFLCRNKCRI 368 (369)
Q Consensus 330 ~LP~-~i~~L~~L~~L~Ls~n~~l~~lP~-~i~~L~~L~~L 368 (369)
-++. .+..|++|..|.+.+|. +..++. .+..+..++++
T Consensus 154 Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tl 193 (498)
T KOG4237|consen 154 CIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTL 193 (498)
T ss_pred chhHHHHHHhhhcchhcccchh-hhhhccccccchhccchH
Confidence 6554 46888888888888887 777877 45555555443
No 42
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.85 E-value=9.7e-07 Score=73.56 Aligned_cols=94 Identities=19% Similarity=0.276 Sum_probs=76.3
Q ss_pred eeEEeecCCCCCCCcCccc----cccCccEEEccCCCCCCcCCC-C-CCCCCCCEEEeecCCCcccCccccCCCCCcEEe
Q 017543 272 LVVLNLRDCKSLKSLPAGI----HLEFLKELDLSGCSKLKRLPD-I-SSAANIEEMFLNGTAIEELPSSIECLYKLLHLD 345 (369)
Q Consensus 272 L~~L~L~~n~~l~~lP~~i----~L~~L~~L~Ls~~~~l~~lP~-i-~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L~ 345 (369)
+-.|+|+.| .+..++... ....|...+|++ |.+..+|. + .+.+-++.|+|++|.|..+|.++..++.|+.|+
T Consensus 29 ~h~ldLssc-~lm~i~davy~l~~~~el~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSC-QLMYIADAVYMLSKGYELTKISLSD-NGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccc-hhhHHHHHHHHHhCCceEEEEeccc-chhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence 445678888 477666655 456677789999 78999997 4 456689999999999999999999999999999
Q ss_pred cccCCCCCcCCccccCCCCCCCC
Q 017543 346 LEDCKSLKSLPSGLFLCRNKCRI 368 (369)
Q Consensus 346 Ls~n~~l~~lP~~i~~L~~L~~L 368 (369)
++.|+ +...|.-|..|.+|-.|
T Consensus 107 l~~N~-l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 107 LRFNP-LNAEPRVIAPLIKLDML 128 (177)
T ss_pred cccCc-cccchHHHHHHHhHHHh
Confidence 99998 77888888777666543
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.65 E-value=1.7e-05 Score=79.16 Aligned_cols=88 Identities=27% Similarity=0.396 Sum_probs=69.4
Q ss_pred ccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccCccccCCCCCcEE
Q 017543 266 SQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHL 344 (369)
Q Consensus 266 ~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L 344 (369)
+..+.+|..|++.+| .+..+...+ .+++|++|+|++ |.|+.+..+..|+.|+.|++++|.|..++. +..|..|+.|
T Consensus 91 l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~-N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l 167 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSF-NKITKLEGLSTLTLLKELNLSGNLISDISG-LESLKSLKLL 167 (414)
T ss_pred cccccceeeeecccc-chhhcccchhhhhcchheeccc-cccccccchhhccchhhheeccCcchhccC-Cccchhhhcc
Confidence 566788888888888 577777656 788888999988 778888888888888888888888887754 5668888888
Q ss_pred ecccCCCCCcCCc
Q 017543 345 DLEDCKSLKSLPS 357 (369)
Q Consensus 345 ~Ls~n~~l~~lP~ 357 (369)
++++|. +..++.
T Consensus 168 ~l~~n~-i~~ie~ 179 (414)
T KOG0531|consen 168 DLSYNR-IVDIEN 179 (414)
T ss_pred cCCcch-hhhhhh
Confidence 888887 555544
No 44
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.65 E-value=4.1e-05 Score=75.49 Aligned_cols=84 Identities=29% Similarity=0.553 Sum_probs=64.9
Q ss_pred ccceeeEEeecCCCCCCCcCccccccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecC-CCcccCccccCCCCCcEEe
Q 017543 268 HLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGT-AIEELPSSIECLYKLLHLD 345 (369)
Q Consensus 268 ~l~~L~~L~L~~n~~l~~lP~~i~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n-~l~~LP~~i~~L~~L~~L~ 345 (369)
.+.++..|++++| .+..+|. + ..+|+.|.+++|+.+..+|+ +. .+|++|++++| .+..||.+ |+.|+
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP~-L-P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s------Le~L~ 118 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLPV-L-PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES------VRSLE 118 (426)
T ss_pred HhcCCCEEEeCCC-CCcccCC-C-CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc------cceEE
Confidence 3567889999999 6999983 2 34699999999999999997 63 68999999999 88899976 44444
Q ss_pred cccC--CCCCcCCccccCC
Q 017543 346 LEDC--KSLKSLPSGLFLC 362 (369)
Q Consensus 346 Ls~n--~~l~~lP~~i~~L 362 (369)
|.++ ..++.||.++..|
T Consensus 119 L~~n~~~~L~~LPssLk~L 137 (426)
T PRK15386 119 IKGSATDSIKNVPNGLTSL 137 (426)
T ss_pred eCCCCCcccccCcchHhhe
Confidence 5443 3477888777555
No 45
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.65 E-value=3.9e-06 Score=80.86 Aligned_cols=96 Identities=24% Similarity=0.291 Sum_probs=77.0
Q ss_pred eeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCC-C-CCCCCCCCEEEeec-CCCcccCcc-ccCCCCCcEE
Q 017543 271 TLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLP-D-ISSAANIEEMFLNG-TAIEELPSS-IECLYKLLHL 344 (369)
Q Consensus 271 ~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP-~-i~~L~~L~~L~Ls~-n~l~~LP~~-i~~L~~L~~L 344 (369)
.-+.+.|..| .++.+|++. .+.+|+.|||++ |.|..|- + +..|.+|-.|-+-+ |+|+.||.. ++.|..|+-|
T Consensus 68 ~tveirLdqN-~I~~iP~~aF~~l~~LRrLdLS~-N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 68 ETVEIRLDQN-QISSIPPGAFKTLHRLRRLDLSK-NNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred cceEEEeccC-CcccCChhhccchhhhceecccc-cchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 4567888899 699999987 899999999999 6677775 4 88998888776655 899999987 6999999999
Q ss_pred ecccCCCCCcCCccccCCCCCCCC
Q 017543 345 DLEDCKSLKSLPSGLFLCRNKCRI 368 (369)
Q Consensus 345 ~Ls~n~~l~~lP~~i~~L~~L~~L 368 (369)
.+.-|+........+..|++|+.|
T Consensus 146 llNan~i~Cir~~al~dL~~l~lL 169 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLL 169 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchh
Confidence 999888544445556667776543
No 46
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.59 E-value=1.2e-05 Score=76.55 Aligned_cols=98 Identities=21% Similarity=0.247 Sum_probs=70.4
Q ss_pred ceeeEEeecCCCCCC-----CcCccc-cc-cCccEEEccCCCCCC----cCCC-CCCCCCCCEEEeecCCCc-----ccC
Q 017543 270 NTLVVLNLRDCKSLK-----SLPAGI-HL-EFLKELDLSGCSKLK----RLPD-ISSAANIEEMFLNGTAIE-----ELP 332 (369)
Q Consensus 270 ~~L~~L~L~~n~~l~-----~lP~~i-~L-~~L~~L~Ls~~~~l~----~lP~-i~~L~~L~~L~Ls~n~l~-----~LP 332 (369)
++|+.|++++|. +. .+...+ .+ ++|+.|+|++|.... .++. +..+.+|++|+|++|.+. .++
T Consensus 108 ~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 186 (319)
T cd00116 108 SSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALA 186 (319)
T ss_pred CcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHH
Confidence 349999999994 44 233344 56 899999999976442 3344 667889999999999887 455
Q ss_pred ccccCCCCCcEEecccCCCC----CcCCccccCCCCCCCC
Q 017543 333 SSIECLYKLLHLDLEDCKSL----KSLPSGLFLCRNKCRI 368 (369)
Q Consensus 333 ~~i~~L~~L~~L~Ls~n~~l----~~lP~~i~~L~~L~~L 368 (369)
..+..+++|++|+|++|.+. +.++..+..+++|++|
T Consensus 187 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L 226 (319)
T cd00116 187 EGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVL 226 (319)
T ss_pred HHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEE
Confidence 66677789999999999743 2344455566777765
No 47
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=3e-05 Score=75.74 Aligned_cols=99 Identities=21% Similarity=0.273 Sum_probs=66.1
Q ss_pred ccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC---CCCCCCCCEEEeecCCCcc--cCcc-----cc
Q 017543 268 HLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD---ISSAANIEEMFLNGTAIEE--LPSS-----IE 336 (369)
Q Consensus 268 ~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~---i~~L~~L~~L~Ls~n~l~~--LP~~-----i~ 336 (369)
.+++|..|+|..|..+..--... -+..|+.|||++|+ +..++. ++.|+.|..|+++.|.|.+ +|+. ..
T Consensus 220 ~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~ 298 (505)
T KOG3207|consen 220 TFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTH 298 (505)
T ss_pred hCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc-ccccccccccccccchhhhhccccCcchhcCCCccchhhhc
Confidence 35566666666663222111122 47789999999844 555662 8899999999999998874 4654 35
Q ss_pred CCCCCcEEecccCCCCCcCC--ccccCCCCCCCC
Q 017543 337 CLYKLLHLDLEDCKSLKSLP--SGLFLCRNKCRI 368 (369)
Q Consensus 337 ~L~~L~~L~Ls~n~~l~~lP--~~i~~L~~L~~L 368 (369)
...+|++|++..|+ +..+| ..+..+++|++|
T Consensus 299 ~f~kL~~L~i~~N~-I~~w~sl~~l~~l~nlk~l 331 (505)
T KOG3207|consen 299 TFPKLEYLNISENN-IRDWRSLNHLRTLENLKHL 331 (505)
T ss_pred ccccceeeecccCc-cccccccchhhccchhhhh
Confidence 67889999999988 54444 345566666665
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.52 E-value=7.2e-06 Score=84.38 Aligned_cols=92 Identities=29% Similarity=0.336 Sum_probs=67.9
Q ss_pred hhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCCCC--CCCCCCEEEeecCCC
Q 017543 252 SACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDIS--SAANIEEMFLNGTAI 328 (369)
Q Consensus 252 l~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~i~--~L~~L~~L~Ls~n~l 328 (369)
.+||.+..+... +.-++.|+.|+|+.| ++..+. .+ .|+.|+.|||+. |.+..+|.++ .+. |+.|+|++|.+
T Consensus 171 fsyN~L~~mD~S--Lqll~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc~-L~~L~lrnN~l 244 (1096)
T KOG1859|consen 171 FSYNRLVLMDES--LQLLPALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSY-NCLRHVPQLSMVGCK-LQLLNLRNNAL 244 (1096)
T ss_pred cchhhHHhHHHH--HHHHHHhhhhccchh-hhhhhH-HHHhccccccccccc-chhccccccchhhhh-heeeeecccHH
Confidence 344554444332 455788889999998 466665 44 788899999998 7788888632 344 88899999988
Q ss_pred cccCccccCCCCCcEEecccCC
Q 017543 329 EELPSSIECLYKLLHLDLEDCK 350 (369)
Q Consensus 329 ~~LP~~i~~L~~L~~L~Ls~n~ 350 (369)
++| .+|.+|++|+.|||+.|-
T Consensus 245 ~tL-~gie~LksL~~LDlsyNl 265 (1096)
T KOG1859|consen 245 TTL-RGIENLKSLYGLDLSYNL 265 (1096)
T ss_pred Hhh-hhHHhhhhhhccchhHhh
Confidence 888 458889999999998875
No 49
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.47 E-value=2.8e-05 Score=74.02 Aligned_cols=85 Identities=26% Similarity=0.319 Sum_probs=64.0
Q ss_pred ccc-ceeeEEeecCCCCCC-----CcCccc-cccCccEEEccCCCCCC----cCCC-CCCCCCCCEEEeecCCCc-----
Q 017543 267 QHL-NTLVVLNLRDCKSLK-----SLPAGI-HLEFLKELDLSGCSKLK----RLPD-ISSAANIEEMFLNGTAIE----- 329 (369)
Q Consensus 267 ~~l-~~L~~L~L~~n~~l~-----~lP~~i-~L~~L~~L~Ls~~~~l~----~lP~-i~~L~~L~~L~Ls~n~l~----- 329 (369)
..+ ++|+.|++++|. +. .++..+ .+.+|+.|+|++|+... .++. +..+++|+.|+|++|.+.
T Consensus 133 ~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 211 (319)
T cd00116 133 KDLPPALEKLVLGRNR-LEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGAS 211 (319)
T ss_pred HhCCCCceEEEcCCCc-CCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHH
Confidence 345 789999999995 54 234444 67899999999965432 2333 556689999999999885
Q ss_pred ccCccccCCCCCcEEecccCCCC
Q 017543 330 ELPSSIECLYKLLHLDLEDCKSL 352 (369)
Q Consensus 330 ~LP~~i~~L~~L~~L~Ls~n~~l 352 (369)
.++..+..+++|++|++++|++.
T Consensus 212 ~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 212 ALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHHHHhcccCCCCEEecCCCcCc
Confidence 45566778899999999999844
No 50
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.07 E-value=0.00017 Score=72.04 Aligned_cols=84 Identities=26% Similarity=0.382 Sum_probs=68.9
Q ss_pred cceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCcccCccccCCCCCcEEec
Q 017543 269 LNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDL 346 (369)
Q Consensus 269 l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L~L 346 (369)
+..+..+.++.| .++.+-..+ .+++|..|++.+ +.+..+.. +..|++|++|+|++|.|+.+. .+..|..|+.|++
T Consensus 71 l~~l~~l~l~~n-~i~~~~~~l~~~~~l~~l~l~~-n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 71 LTSLKELNLRQN-LIAKILNHLSKLKSLEALDLYD-NKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNL 147 (414)
T ss_pred hHhHHhhccchh-hhhhhhcccccccceeeeeccc-cchhhcccchhhhhcchheecccccccccc-chhhccchhhhee
Confidence 455666667777 466644445 789999999999 78999998 999999999999999999885 4788889999999
Q ss_pred ccCCCCCcCC
Q 017543 347 EDCKSLKSLP 356 (369)
Q Consensus 347 s~n~~l~~lP 356 (369)
++|. +..++
T Consensus 148 ~~N~-i~~~~ 156 (414)
T KOG0531|consen 148 SGNL-ISDIS 156 (414)
T ss_pred ccCc-chhcc
Confidence 9998 55554
No 51
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.06 E-value=0.00051 Score=63.17 Aligned_cols=82 Identities=28% Similarity=0.353 Sum_probs=53.1
Q ss_pred cccceeeEEeecCCCCCCCcCccccccCccEEEccCC--CCCCcCCC-CCCCCCCCEEEeecCCCcc---cCccccCCCC
Q 017543 267 QHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGC--SKLKRLPD-ISSAANIEEMFLNGTAIEE---LPSSIECLYK 340 (369)
Q Consensus 267 ~~l~~L~~L~L~~n~~l~~lP~~i~L~~L~~L~Ls~~--~~l~~lP~-i~~L~~L~~L~Ls~n~l~~---LP~~i~~L~~ 340 (369)
..+.+|..|.+.++ .+.++-..-.|++|+.|.+++| .....++. ..++++|++|+|++|+|+- ++. +..|.+
T Consensus 40 d~~~~le~ls~~n~-gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p-l~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINV-GLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP-LKELEN 117 (260)
T ss_pred ccccchhhhhhhcc-ceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch-hhhhcc
Confidence 34566777777666 3443332226788888888886 33444554 4556888888888887763 322 466777
Q ss_pred CcEEecccCC
Q 017543 341 LLHLDLEDCK 350 (369)
Q Consensus 341 L~~L~Ls~n~ 350 (369)
|..|++.+|.
T Consensus 118 L~~Ldl~n~~ 127 (260)
T KOG2739|consen 118 LKSLDLFNCS 127 (260)
T ss_pred hhhhhcccCC
Confidence 7788888776
No 52
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.00 E-value=3e-05 Score=71.88 Aligned_cols=96 Identities=22% Similarity=0.308 Sum_probs=52.0
Q ss_pred eeeEEeecCCCCCCCcCccccccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccCc--cccCCCCCcEEeccc
Q 017543 271 TLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPS--SIECLYKLLHLDLED 348 (369)
Q Consensus 271 ~L~~L~L~~n~~l~~lP~~i~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP~--~i~~L~~L~~L~Ls~ 348 (369)
+.+.|++.|| .+..+.-..+++.|++|.|+- |++..+-.+..|++|++|.|..|.|..|-+ -+.+|++|+.|.|..
T Consensus 20 ~vkKLNcwg~-~L~DIsic~kMp~lEVLsLSv-NkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 20 NVKKLNCWGC-GLDDISICEKMPLLEVLSLSV-NKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred HhhhhcccCC-CccHHHHHHhcccceeEEeec-cccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence 3444555555 344443222566666666665 555555555666666666666666655533 245666666666666
Q ss_pred CCCCCcCCcc-----ccCCCCCCCC
Q 017543 349 CKSLKSLPSG-----LFLCRNKCRI 368 (369)
Q Consensus 349 n~~l~~lP~~-----i~~L~~L~~L 368 (369)
|+..+.-+.+ +--|+||++|
T Consensus 98 NPCc~~ag~nYR~~VLR~LPnLkKL 122 (388)
T KOG2123|consen 98 NPCCGEAGQNYRRKVLRVLPNLKKL 122 (388)
T ss_pred CCcccccchhHHHHHHHHcccchhc
Confidence 6655555543 2335555554
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.89 E-value=0.0014 Score=58.31 Aligned_cols=89 Identities=27% Similarity=0.348 Sum_probs=68.9
Q ss_pred ccccCCCCCCCccccceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCC---CCCCCCCCEEEeecCCCc
Q 017543 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD---ISSAANIEEMFLNGTAIE 329 (369)
Q Consensus 255 ~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~---i~~L~~L~~L~Ls~n~l~ 329 (369)
+.+..++. ++.++.|.+|.|.+| .+..+-+.+ -+++|+.|.|.+ |.+.++-+ +..|+.|++|.+-+|.++
T Consensus 52 Ndl~~l~~---lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 52 NDLRKLDN---LPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTN-NSIQELGDLDPLASCPKLEYLTLLGNPVE 126 (233)
T ss_pred cchhhccc---CCCccccceEEecCC-cceeeccchhhhccccceEEecC-cchhhhhhcchhccCCccceeeecCCchh
Confidence 44444433 567888999999888 688888888 578899999998 55666664 667889999999999888
Q ss_pred ccCc----cccCCCCCcEEeccc
Q 017543 330 ELPS----SIECLYKLLHLDLED 348 (369)
Q Consensus 330 ~LP~----~i~~L~~L~~L~Ls~ 348 (369)
..+. -|.++++|++||..+
T Consensus 127 ~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 127 HKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cccCceeEEEEecCcceEeehhh
Confidence 7664 367899999999864
No 54
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.74 E-value=0.00051 Score=38.82 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=11.7
Q ss_pred CCCEEEeecCCCcccCccccC
Q 017543 317 NIEEMFLNGTAIEELPSSIEC 337 (369)
Q Consensus 317 ~L~~L~Ls~n~l~~LP~~i~~ 337 (369)
+|++|+|++|.|+++|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 355566666655555555443
No 55
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.74 E-value=0.0001 Score=76.23 Aligned_cols=103 Identities=25% Similarity=0.193 Sum_probs=78.6
Q ss_pred HHHhhhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCCCCCCCCCCE
Q 017543 242 WRNALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEE 320 (369)
Q Consensus 242 W~~aL~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~ 320 (369)
...+++.+.+.+ |.+.+. .++..+++|..|||+.| .+..+|.-- .-..|+.|.|++ |.++.+-.|.+|.+|+.
T Consensus 185 ll~ale~LnLsh-Nk~~~v---~~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~L~~L~lrn-N~l~tL~gie~LksL~~ 258 (1096)
T KOG1859|consen 185 LLPALESLNLSH-NKFTKV---DNLRRLPKLKHLDLSYN-CLRHVPQLSMVGCKLQLLNLRN-NALTTLRGIENLKSLYG 258 (1096)
T ss_pred HHHHhhhhccch-hhhhhh---HHHHhcccccccccccc-hhccccccchhhhhheeeeecc-cHHHhhhhHHhhhhhhc
Confidence 334454444433 444433 34778999999999999 689888654 333499999998 78898988999999999
Q ss_pred EEeecCCCcccCc--cccCCCCCcEEecccCC
Q 017543 321 MFLNGTAIEELPS--SIECLYKLLHLDLEDCK 350 (369)
Q Consensus 321 L~Ls~n~l~~LP~--~i~~L~~L~~L~Ls~n~ 350 (369)
|||++|-|....+ -++.|..|+.|.|.||+
T Consensus 259 LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 259 LDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred cchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 9999998864322 26789999999999998
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.65 E-value=0.0025 Score=56.76 Aligned_cols=97 Identities=22% Similarity=0.291 Sum_probs=68.6
Q ss_pred cceeeEEeecCCCCCCCcCccccccCccEEEccCCCCCCcCCC-CC-CCCCCCEEEeecCCCcccCc--cccCCCCCcEE
Q 017543 269 LNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD-IS-SAANIEEMFLNGTAIEELPS--SIECLYKLLHL 344 (369)
Q Consensus 269 l~~L~~L~L~~n~~l~~lP~~i~L~~L~~L~Ls~~~~l~~lP~-i~-~L~~L~~L~Ls~n~l~~LP~--~i~~L~~L~~L 344 (369)
+.....++|++| .+..++.--.+..|..|.|++ |.|..|-+ +. -+++|..|.|.+|.|.+|-+ .+..+++|++|
T Consensus 41 ~d~~d~iDLtdN-dl~~l~~lp~l~rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 41 LDQFDAIDLTDN-DLRKLDNLPHLPRLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccccceeccccc-chhhcccCCCccccceEEecC-CcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 346778899998 577666433889999999998 66777765 65 46779999999999887643 35678899999
Q ss_pred ecccCCCCCcCCc----cccCCCCCCCC
Q 017543 345 DLEDCKSLKSLPS----GLFLCRNKCRI 368 (369)
Q Consensus 345 ~Ls~n~~l~~lP~----~i~~L~~L~~L 368 (369)
.+-+|+ ....+. -+..+++|+.|
T Consensus 119 tll~Np-v~~k~~YR~yvl~klp~l~~L 145 (233)
T KOG1644|consen 119 TLLGNP-VEHKKNYRLYVLYKLPSLRTL 145 (233)
T ss_pred eecCCc-hhcccCceeEEEEecCcceEe
Confidence 998887 333221 24455555543
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.53 E-value=0.00066 Score=71.91 Aligned_cols=82 Identities=23% Similarity=0.272 Sum_probs=59.0
Q ss_pred ccceeeEEeecCCCCC-CCcCccc-cccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccCc--cccCCCCCcE
Q 017543 268 HLNTLVVLNLRDCKSL-KSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPS--SIECLYKLLH 343 (369)
Q Consensus 268 ~l~~L~~L~L~~n~~l-~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP~--~i~~L~~L~~ 343 (369)
.|+.|+.|.+.|-... ..+-.-. ++++|..||+|+ +++..+-.|++|+||+.|.+.+=.++.-+. .+-+|++|++
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~-TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISG-TNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCC-CCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 4788888888874211 1222222 688899999998 667777558899999999887766665443 4678999999
Q ss_pred EecccCC
Q 017543 344 LDLEDCK 350 (369)
Q Consensus 344 L~Ls~n~ 350 (369)
||+|..+
T Consensus 225 LDIS~~~ 231 (699)
T KOG3665|consen 225 LDISRDK 231 (699)
T ss_pred eeccccc
Confidence 9998765
No 58
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.00041 Score=67.97 Aligned_cols=82 Identities=18% Similarity=0.173 Sum_probs=59.8
Q ss_pred ccceeeEEeecCCCCCCC--cCccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCcccC--ccccCCCCC
Q 017543 268 HLNTLVVLNLRDCKSLKS--LPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELP--SSIECLYKL 341 (369)
Q Consensus 268 ~l~~L~~L~L~~n~~l~~--lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~~LP--~~i~~L~~L 341 (369)
.+..|..|.|+.|. +.. +-... .+++|..|+|..|+.+...-. ...+..|+.|||++|++..+| .-++.|+.|
T Consensus 195 ~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L 273 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGL 273 (505)
T ss_pred hhhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccch
Confidence 56788888888883 542 22222 578899999998643322222 445677999999999998888 457999999
Q ss_pred cEEecccCC
Q 017543 342 LHLDLEDCK 350 (369)
Q Consensus 342 ~~L~Ls~n~ 350 (369)
..|+++.|.
T Consensus 274 ~~Lnls~tg 282 (505)
T KOG3207|consen 274 NQLNLSSTG 282 (505)
T ss_pred hhhhccccC
Confidence 999999887
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.26 E-value=0.0026 Score=67.42 Aligned_cols=83 Identities=16% Similarity=0.217 Sum_probs=65.1
Q ss_pred ccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC---CCCCCCCCEEEeecCCCcccCc-------c
Q 017543 266 SQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD---ISSAANIEEMFLNGTAIEELPS-------S 334 (369)
Q Consensus 266 ~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~---i~~L~~L~~L~Ls~n~l~~LP~-------~ 334 (369)
..++++|..||++++ +++.+ .++ +|++|++|.+.+ -.++.-.+ +.+|++|+.||+|...-..-|. .
T Consensus 169 c~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~L~mrn-Le~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec 245 (699)
T KOG3665|consen 169 CASFPNLRSLDISGT-NISNL-SGISRLKNLQVLSMRN-LEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLEC 245 (699)
T ss_pred hhccCccceeecCCC-CccCc-HHHhccccHHHHhccC-CCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHh
Confidence 347899999999999 58888 677 999999999997 55655553 7899999999999875443332 1
Q ss_pred ccCCCCCcEEecccCCC
Q 017543 335 IECLYKLLHLDLEDCKS 351 (369)
Q Consensus 335 i~~L~~L~~L~Ls~n~~ 351 (369)
-..|++|+.||.+++..
T Consensus 246 ~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 246 GMVLPELRFLDCSGTDI 262 (699)
T ss_pred cccCccccEEecCCcch
Confidence 13599999999998763
No 60
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.11 E-value=0.0029 Score=58.23 Aligned_cols=75 Identities=20% Similarity=0.169 Sum_probs=53.1
Q ss_pred cCccc-cccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecC--CCc-ccCccccCCCCCcEEecccCCCCCcCCccccC
Q 017543 286 LPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGT--AIE-ELPSSIECLYKLLHLDLEDCKSLKSLPSGLFL 361 (369)
Q Consensus 286 lP~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n--~l~-~LP~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~ 361 (369)
+.... .+..|+.|.+.++ .+..+-.+..|++|++|.++.| .+. .|+.-+.++++|++|++++|+ +.. ++++--
T Consensus 35 ~~gl~d~~~~le~ls~~n~-gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~-lstl~p 111 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINV-GLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKD-LSTLRP 111 (260)
T ss_pred cccccccccchhhhhhhcc-ceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-ccc-ccccch
Confidence 44334 6777788877763 3444444667889999999999 665 787777888999999999998 332 444433
Q ss_pred CC
Q 017543 362 CR 363 (369)
Q Consensus 362 L~ 363 (369)
++
T Consensus 112 l~ 113 (260)
T KOG2739|consen 112 LK 113 (260)
T ss_pred hh
Confidence 33
No 61
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.70 E-value=0.0036 Score=35.29 Aligned_cols=22 Identities=36% Similarity=0.392 Sum_probs=18.1
Q ss_pred CCcEEecccCCCCCcCCccccCC
Q 017543 340 KLLHLDLEDCKSLKSLPSGLFLC 362 (369)
Q Consensus 340 ~L~~L~Ls~n~~l~~lP~~i~~L 362 (369)
+|++|+|++|+ ++.||.++.+|
T Consensus 1 ~L~~Ldls~n~-l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNN-LTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSE-ESEEGTTTTT-
T ss_pred CccEEECCCCc-CEeCChhhcCC
Confidence 58999999997 66999997654
No 62
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=95.60 E-value=0.0087 Score=59.20 Aligned_cols=85 Identities=18% Similarity=0.326 Sum_probs=60.4
Q ss_pred CCeeecCCCccccCchHHHHHHHHhhCCcceEe-----ccCcchhHHHHHHHHHcceeeEEeccCCc--------ccccc
Q 017543 118 EGVPTAIPSEDTRDNFTSHLYSALSQKSIETFI-----NRGDEISQSLVDAIEASAISLIIFSEGYA--------SSRWF 184 (369)
Q Consensus 118 ~dvFis~~~~d~r~~F~~~L~~aL~~~gi~~~~-----~~G~~i~~~l~~~ie~S~i~ivv~S~~y~--------~S~~c 184 (369)
-|||||||... -+-..+.|-.-|.-+|.++|| ..|+ ..+.|++.|...+-+|.|++||-. +..|.
T Consensus 613 ~DVFISYRRst-GnQLASLiKV~LQL~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~sLDr~lnD~nCeDWV 690 (832)
T KOG3678|consen 613 IDVFISYRRST-GNQLASLIKVLLQLRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNSLDRLLNDDNCEDWV 690 (832)
T ss_pred cceEEEeeccc-cHHHHHHHHHHHHhcCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcchHHHHhccccHHHHH
Confidence 39999999763 445666566677889999999 3444 445899999999999999999743 23344
Q ss_pred cccceeeEEeeeccCeEEeeeeec
Q 017543 185 FDKLVKILQCKRVYGQIVLPVFYG 208 (369)
Q Consensus 185 l~ELv~i~~~~~~~~l~vlPiFy~ 208 (369)
-.|++ |.-+.+..|+|||..
T Consensus 691 HKEl~----~Afe~~KNIiPI~D~ 710 (832)
T KOG3678|consen 691 HKELK----CAFEHQKNIIPIFDT 710 (832)
T ss_pred HHHHH----HHHHhcCCeeeeecc
Confidence 44443 333455688999864
No 63
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.22 E-value=0.011 Score=31.13 Aligned_cols=16 Identities=25% Similarity=0.519 Sum_probs=5.9
Q ss_pred CCCEEEeecCCCcccC
Q 017543 317 NIEEMFLNGTAIEELP 332 (369)
Q Consensus 317 ~L~~L~Ls~n~l~~LP 332 (369)
+|+.|+|++|.|++||
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 3455555555554444
No 64
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=94.93 E-value=0.028 Score=46.76 Aligned_cols=75 Identities=16% Similarity=0.291 Sum_probs=37.4
Q ss_pred CCeeecCCCccccCchHHHHHHHHhhC-------Ccce-Ee---------c-----cCcchhHHHHHHHHHcceeeEEec
Q 017543 118 EGVPTAIPSEDTRDNFTSHLYSALSQK-------SIET-FI---------N-----RGDEISQSLVDAIEASAISLIIFS 175 (369)
Q Consensus 118 ~dvFis~~~~d~r~~F~~~L~~aL~~~-------gi~~-~~---------~-----~G~~i~~~l~~~ie~S~i~ivv~S 175 (369)
|.|||||+..|-. .....|...+... .+.. |. . ..+.|...|.++|..|.+.||+.+
T Consensus 1 ~~vFIS~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig 79 (130)
T PF08937_consen 1 YKVFISYSHDDDD-WYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG 79 (130)
T ss_dssp ----------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred CCccccccccCcH-HHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence 4799999998855 3444444444441 2211 11 1 223677899999999999999999
Q ss_pred cCCcccccccccceeeEE
Q 017543 176 EGYASSRWFFDKLVKILQ 193 (369)
Q Consensus 176 ~~y~~S~~cl~ELv~i~~ 193 (369)
++-..|.|+-+|+...++
T Consensus 80 ~~T~~s~wV~~EI~~A~~ 97 (130)
T PF08937_consen 80 PNTAKSKWVNWEIEYALK 97 (130)
T ss_dssp TT----HHHHHHHHHHTT
T ss_pred CCcccCcHHHHHHHHHHH
Confidence 999999999999975443
No 65
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=94.49 E-value=0.0014 Score=61.67 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=13.8
Q ss_pred hHhhhhhhccCCCCCCCCCCchhHHH
Q 017543 26 RWMSQEVRESSPRTSAASGDDWRSAF 51 (369)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 51 (369)
|.|.||.-+-+.++.-.-+-+|..+=
T Consensus 3 ~~h~q~i~~lss~v~~s~~~s~~s~~ 28 (419)
T KOG2120|consen 3 RKHLQEIPDLSSNVATSFTWSWDSSK 28 (419)
T ss_pred hhhhhhccCccchhhcccCcccchhH
Confidence 56788885433333323455565543
No 66
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.23 E-value=0.031 Score=32.57 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=12.6
Q ss_pred CCCCCEEEeecCCCcccCccc
Q 017543 315 AANIEEMFLNGTAIEELPSSI 335 (369)
Q Consensus 315 L~~L~~L~Ls~n~l~~LP~~i 335 (369)
|++|++|+|++|.|+.+|..+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 345666666666666666543
No 67
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.23 E-value=0.031 Score=32.57 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=12.6
Q ss_pred CCCCCEEEeecCCCcccCccc
Q 017543 315 AANIEEMFLNGTAIEELPSSI 335 (369)
Q Consensus 315 L~~L~~L~Ls~n~l~~LP~~i 335 (369)
|++|++|+|++|.|+.+|..+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 345666666666666666543
No 68
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.18 E-value=0.01 Score=55.95 Aligned_cols=13 Identities=38% Similarity=0.398 Sum_probs=6.3
Q ss_pred ccceeeEEeecCC
Q 017543 268 HLNTLVVLNLRDC 280 (369)
Q Consensus 268 ~l~~L~~L~L~~n 280 (369)
+++.|++|+|+.|
T Consensus 95 ~lP~l~~LNls~N 107 (418)
T KOG2982|consen 95 QLPALTTLNLSCN 107 (418)
T ss_pred cCccceEeeccCC
Confidence 3444555555444
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.47 E-value=0.0046 Score=57.68 Aligned_cols=78 Identities=23% Similarity=0.291 Sum_probs=61.0
Q ss_pred ccccceeeEEeecCCCCCCCcCccccccCccEEEccCCCCCCcCCC---CCCCCCCCEEEeecCCCc-ccCcc-----cc
Q 017543 266 SQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD---ISSAANIEEMFLNGTAIE-ELPSS-----IE 336 (369)
Q Consensus 266 ~~~l~~L~~L~L~~n~~l~~lP~~i~L~~L~~L~Ls~~~~l~~lP~---i~~L~~L~~L~Ls~n~l~-~LP~~-----i~ 336 (369)
...++.|++|.|+-| .+.+|-+-..++.|+.|+|.. |.|..|-+ +.+|++|+.|.|..|... +-+.. |.
T Consensus 37 c~kMp~lEVLsLSvN-kIssL~pl~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR 114 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVN-KISSLAPLQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLR 114 (388)
T ss_pred HHhcccceeEEeecc-ccccchhHHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHH
Confidence 457889999999999 588887644899999999999 77888876 789999999999998654 33332 34
Q ss_pred CCCCCcEEe
Q 017543 337 CLYKLLHLD 345 (369)
Q Consensus 337 ~L~~L~~L~ 345 (369)
-|++|+.||
T Consensus 115 ~LPnLkKLD 123 (388)
T KOG2123|consen 115 VLPNLKKLD 123 (388)
T ss_pred Hcccchhcc
Confidence 566676664
No 70
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.41 E-value=0.046 Score=28.70 Aligned_cols=17 Identities=47% Similarity=0.649 Sum_probs=11.5
Q ss_pred CCCcEEecccCCCCCcCC
Q 017543 339 YKLLHLDLEDCKSLKSLP 356 (369)
Q Consensus 339 ~~L~~L~Ls~n~~l~~lP 356 (369)
++|+.|+|++|+ +.+||
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 479999999999 78877
No 71
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.79 E-value=0.088 Score=30.62 Aligned_cols=23 Identities=48% Similarity=0.693 Sum_probs=20.0
Q ss_pred CCCCcEEecccCCCCCcCCccccC
Q 017543 338 LYKLLHLDLEDCKSLKSLPSGLFL 361 (369)
Q Consensus 338 L~~L~~L~Ls~n~~l~~lP~~i~~ 361 (369)
|++|++|+|++|+ +..||.+++.
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQ-LSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHHHcc
Confidence 5789999999998 9999998764
No 72
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.79 E-value=0.088 Score=30.62 Aligned_cols=23 Identities=48% Similarity=0.693 Sum_probs=20.0
Q ss_pred CCCCcEEecccCCCCCcCCccccC
Q 017543 338 LYKLLHLDLEDCKSLKSLPSGLFL 361 (369)
Q Consensus 338 L~~L~~L~Ls~n~~l~~lP~~i~~ 361 (369)
|++|++|+|++|+ +..||.+++.
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQ-LSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHHHcc
Confidence 5789999999998 9999998764
No 73
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.51 E-value=0.0028 Score=57.65 Aligned_cols=84 Identities=19% Similarity=0.158 Sum_probs=69.2
Q ss_pred ccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCcccCccccCCCCCcE
Q 017543 266 SQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSSIECLYKLLH 343 (369)
Q Consensus 266 ~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~ 343 (369)
+..+...+.||++.| .+..+...+ -++.|..|+++. +.+..+|. .+.+..+..+++..|..+.+|.+.++++.+++
T Consensus 38 i~~~kr~tvld~~s~-r~vn~~~n~s~~t~~~rl~~sk-nq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSN-RLVNLGKNFSILTRLVRLDLSK-NQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKK 115 (326)
T ss_pred hhccceeeeehhhhh-HHHhhccchHHHHHHHHHhccH-hhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcch
Confidence 345677888999888 466777777 688888899997 77888886 88888888888888899999999999999999
Q ss_pred EecccCCC
Q 017543 344 LDLEDCKS 351 (369)
Q Consensus 344 L~Ls~n~~ 351 (369)
+++.+|.+
T Consensus 116 ~e~k~~~~ 123 (326)
T KOG0473|consen 116 NEQKKTEF 123 (326)
T ss_pred hhhccCcc
Confidence 99888774
No 74
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=91.93 E-value=0.028 Score=54.00 Aligned_cols=84 Identities=29% Similarity=0.397 Sum_probs=60.4
Q ss_pred ccccceeeEEeecCCCCCCC-----cCccc-cccCccEEEccCCCCCCc----CCC--CCCCCCCCEEEeecCCCc----
Q 017543 266 SQHLNTLVVLNLRDCKSLKS-----LPAGI-HLEFLKELDLSGCSKLKR----LPD--ISSAANIEEMFLNGTAIE---- 329 (369)
Q Consensus 266 ~~~l~~L~~L~L~~n~~l~~-----lP~~i-~L~~L~~L~Ls~~~~l~~----lP~--i~~L~~L~~L~Ls~n~l~---- 329 (369)
+..+++|++|+|++|. ++. +...+ .+++|+.|++++|..-.. +-+ -...++|+.|.|.+|.|+
T Consensus 209 l~~~~~LevLdl~DNt-ft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~ 287 (382)
T KOG1909|consen 209 LEHCPHLEVLDLRDNT-FTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAA 287 (382)
T ss_pred HHhCCcceeeecccch-hhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHH
Confidence 4568899999999984 432 23333 577899999999864322 222 234688999999999886
Q ss_pred -ccCccccCCCCCcEEecccCC
Q 017543 330 -ELPSSIECLYKLLHLDLEDCK 350 (369)
Q Consensus 330 -~LP~~i~~L~~L~~L~Ls~n~ 350 (369)
.+-..+...+.|..|+|++|.
T Consensus 288 ~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 288 LALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHHHHHhcchhhHHhcCCccc
Confidence 344556778899999999998
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.68 E-value=0.0046 Score=56.27 Aligned_cols=76 Identities=16% Similarity=0.125 Sum_probs=66.3
Q ss_pred cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCcccCccccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543 291 HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI 368 (369)
Q Consensus 291 ~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L 368 (369)
.....++||++. +.+..+-. ++.++.|..|+++.|.|..+|...+.+..+.++++.+|+ +..+|.+...++.++.+
T Consensus 40 ~~kr~tvld~~s-~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 40 SFKRVTVLDLSS-NRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKEPHPKKN 116 (326)
T ss_pred ccceeeeehhhh-hHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCccccccCCcchh
Confidence 577888999998 55656665 778899999999999999999999999999999999877 89999999998887764
No 76
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=91.32 E-value=0.038 Score=52.21 Aligned_cols=59 Identities=24% Similarity=0.212 Sum_probs=28.5
Q ss_pred cccCccEEEccCCCCCCcC--CCCCCCCCCCEEEeecCC-Cc-ccCccccCCCCCcEEecccC
Q 017543 291 HLEFLKELDLSGCSKLKRL--PDISSAANIEEMFLNGTA-IE-ELPSSIECLYKLLHLDLEDC 349 (369)
Q Consensus 291 ~L~~L~~L~Ls~~~~l~~l--P~i~~L~~L~~L~Ls~n~-l~-~LP~~i~~L~~L~~L~Ls~n 349 (369)
..++|..|||++|..+..= -++-++..|++|.|+.|. |- +.--.++..++|.+|++.+|
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 3455556666665544431 014455556666665552 21 11123455555666666554
No 77
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=90.98 E-value=0.36 Score=39.14 Aligned_cols=92 Identities=17% Similarity=0.305 Sum_probs=45.7
Q ss_pred ccccceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCcccCcc-ccCCCC
Q 017543 266 SQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPSS-IECLYK 340 (369)
Q Consensus 266 ~~~l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~LP~~-i~~L~~ 340 (369)
+..+..|+.+.+.++ +..++... ++.+|+.+.+.+ .+..++. +..+++|+.+++..+ +..++.. +.+. +
T Consensus 31 F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~ 104 (129)
T PF13306_consen 31 FSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-N 104 (129)
T ss_dssp TTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T
T ss_pred ccccccccccccccc--ccccceeeeecccccccccccc--cccccccccccccccccccccCcc-ccEEchhhhcCC-C
Confidence 445667788887764 66666655 666788888864 4566665 667888888888665 6666554 4555 7
Q ss_pred CcEEecccCCCCCcCCccc-cCCCCC
Q 017543 341 LLHLDLEDCKSLKSLPSGL-FLCRNK 365 (369)
Q Consensus 341 L~~L~Ls~n~~l~~lP~~i-~~L~~L 365 (369)
|+.+.+.. . +..++... .++++|
T Consensus 105 l~~i~~~~-~-~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 105 LKEINIPS-N-ITKIEENAFKNCTKL 128 (129)
T ss_dssp --EEE-TT-B--SS----GGG-----
T ss_pred ceEEEECC-C-ccEECCccccccccC
Confidence 88887764 2 45555543 334444
No 78
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=89.05 E-value=1 Score=36.41 Aligned_cols=87 Identities=13% Similarity=0.257 Sum_probs=50.0
Q ss_pred ccccceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCcccCcc-ccCCCC
Q 017543 266 SQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPSS-IECLYK 340 (369)
Q Consensus 266 ~~~l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~LP~~-i~~L~~ 340 (369)
+..+.+|+.+.+..+ +..++... .+.+|+.+.+.+ + +..++. +.++.+|+.+.+.. .+..++.. +..+.+
T Consensus 8 F~~~~~l~~i~~~~~--~~~I~~~~F~~~~~l~~i~~~~-~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 8 FYNCSNLESITFPNT--IKKIGENAFSNCTSLKSINFPN-N-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTT-TT--EEEETST----EE-TTTTTT-TT-SEEEESS-T-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HhCCCCCCEEEECCC--eeEeChhhcccccccccccccc-c-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 445667888887753 66777665 677888888886 3 777885 77887899998865 66666654 456888
Q ss_pred CcEEecccCCCCCcCCccc
Q 017543 341 LLHLDLEDCKSLKSLPSGL 359 (369)
Q Consensus 341 L~~L~Ls~n~~l~~lP~~i 359 (369)
|+.+++..+ +..++...
T Consensus 83 l~~i~~~~~--~~~i~~~~ 99 (129)
T PF13306_consen 83 LKNIDIPSN--ITEIGSSS 99 (129)
T ss_dssp ECEEEETTT---BEEHTTT
T ss_pred ccccccCcc--ccEEchhh
Confidence 888888643 44555443
No 79
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=88.38 E-value=0.28 Score=45.98 Aligned_cols=39 Identities=26% Similarity=0.374 Sum_probs=18.1
Q ss_pred cccCccEEEccCCCCCCcCCC-----CCCCCCCCEEEeecCCCc
Q 017543 291 HLEFLKELDLSGCSKLKRLPD-----ISSAANIEEMFLNGTAIE 329 (369)
Q Consensus 291 ~L~~L~~L~Ls~~~~l~~lP~-----i~~L~~L~~L~Ls~n~l~ 329 (369)
+++.|+..+||+|-.-..+|+ |.+-++|+.|.|++|.+.
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 344555555555333222332 344455555555555444
No 80
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.04 E-value=0.2 Score=47.52 Aligned_cols=83 Identities=24% Similarity=0.306 Sum_probs=59.4
Q ss_pred cccceeeEEeecCCCCCCCcC---ccc-cccCccEEEccCCCCCCcCCCC-CCCCCCCEEEeecCCCc--ccCccccCCC
Q 017543 267 QHLNTLVVLNLRDCKSLKSLP---AGI-HLEFLKELDLSGCSKLKRLPDI-SSAANIEEMFLNGTAIE--ELPSSIECLY 339 (369)
Q Consensus 267 ~~l~~L~~L~L~~n~~l~~lP---~~i-~L~~L~~L~Ls~~~~l~~lP~i-~~L~~L~~L~Ls~n~l~--~LP~~i~~L~ 339 (369)
..++.++.|+|.+| .+..-. .-+ +|+.|+.|+|+.|..-..|-.+ -.+.||+.|-|.++.+. .+-..+..|+
T Consensus 68 ~~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 68 SSVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred HHhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 34677889999999 465433 223 8999999999975332112112 35678999999999775 6666678898
Q ss_pred CCcEEecccCC
Q 017543 340 KLLHLDLEDCK 350 (369)
Q Consensus 340 ~L~~L~Ls~n~ 350 (369)
+++.|+++.|+
T Consensus 147 ~vtelHmS~N~ 157 (418)
T KOG2982|consen 147 KVTELHMSDNS 157 (418)
T ss_pred hhhhhhhccch
Confidence 99999888885
No 81
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=86.32 E-value=0.15 Score=51.15 Aligned_cols=87 Identities=29% Similarity=0.410 Sum_probs=54.5
Q ss_pred ccccceeeEEeecCC-CCCCCcC---ccc--cccCccEEEccCCCCCCcCC--CCC-CCCCCCEEEeecCC-Cc--ccCc
Q 017543 266 SQHLNTLVVLNLRDC-KSLKSLP---AGI--HLEFLKELDLSGCSKLKRLP--DIS-SAANIEEMFLNGTA-IE--ELPS 333 (369)
Q Consensus 266 ~~~l~~L~~L~L~~n-~~l~~lP---~~i--~L~~L~~L~Ls~~~~l~~lP--~i~-~L~~L~~L~Ls~n~-l~--~LP~ 333 (369)
...++.|+.|+++++ ......+ ..+ .+.+|+.|+++.|..+...- .+. .+++|+.|.+.++. ++ .|=.
T Consensus 210 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~ 289 (482)
T KOG1947|consen 210 ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVS 289 (482)
T ss_pred HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHH
Confidence 345678888888873 2222222 112 46788888888876544332 122 37788888877664 54 3333
Q ss_pred cccCCCCCcEEecccCCCC
Q 017543 334 SIECLYKLLHLDLEDCKSL 352 (369)
Q Consensus 334 ~i~~L~~L~~L~Ls~n~~l 352 (369)
-...++.|++|+|+.|..+
T Consensus 290 i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 290 IAERCPSLRELDLSGCHGL 308 (482)
T ss_pred HHHhcCcccEEeeecCccc
Confidence 3356778999999888754
No 82
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=86.09 E-value=2 Score=35.47 Aligned_cols=56 Identities=20% Similarity=0.287 Sum_probs=43.7
Q ss_pred CeeecCCCccccCchHHHHHHHHhhCCcceEe-----ccCcchhHHHHHHHHHcceeeEEeccC
Q 017543 119 GVPTAIPSEDTRDNFTSHLYSALSQKSIETFI-----NRGDEISQSLVDAIEASAISLIIFSEG 177 (369)
Q Consensus 119 dvFis~~~~d~r~~F~~~L~~aL~~~gi~~~~-----~~G~~i~~~l~~~ie~S~i~ivv~S~~ 177 (369)
.|||-|. +|.. ....+...|+..|+.+-+ ..|..|.+.|.+...++..+|++++|+
T Consensus 1 kVFIvhg-~~~~--~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpD 61 (125)
T PF10137_consen 1 KVFIVHG-RDLA--AAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPD 61 (125)
T ss_pred CEEEEeC-CCHH--HHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEccc
Confidence 3888887 5532 444566677767877766 788999999999999999999999984
No 83
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=86.01 E-value=0.42 Score=28.05 Aligned_cols=17 Identities=18% Similarity=0.517 Sum_probs=11.7
Q ss_pred CCCEEEeecCCCcccCc
Q 017543 317 NIEEMFLNGTAIEELPS 333 (369)
Q Consensus 317 ~L~~L~Ls~n~l~~LP~ 333 (369)
+|+.|++++|++++||+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 46677777777777765
No 84
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=85.79 E-value=0.24 Score=47.76 Aligned_cols=81 Identities=23% Similarity=0.288 Sum_probs=44.4
Q ss_pred cceeeEEeecCCCCCCC-----cCccc-cccCccEEEccCCCCCCc----CCC-CCCCCCCCEEEeecCCCc-----ccC
Q 017543 269 LNTLVVLNLRDCKSLKS-----LPAGI-HLEFLKELDLSGCSKLKR----LPD-ISSAANIEEMFLNGTAIE-----ELP 332 (369)
Q Consensus 269 l~~L~~L~L~~n~~l~~-----lP~~i-~L~~L~~L~Ls~~~~l~~----lP~-i~~L~~L~~L~Ls~n~l~-----~LP 332 (369)
.+.|..+.++.|. +.. +-..+ .+++|++|||.+|..-.. +-. ++.+++|+.|++++|.++ .+-
T Consensus 184 ~~~leevr~~qN~-I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~ 262 (382)
T KOG1909|consen 184 HPTLEEVRLSQNG-IRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFV 262 (382)
T ss_pred ccccceEEEeccc-ccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHH
Confidence 3455666666552 221 11223 567777777777543221 222 556667777777777665 222
Q ss_pred ccc-cCCCCCcEEecccCC
Q 017543 333 SSI-ECLYKLLHLDLEDCK 350 (369)
Q Consensus 333 ~~i-~~L~~L~~L~Ls~n~ 350 (369)
..+ ...++|+.|.+.+|.
T Consensus 263 ~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 263 DALKESAPSLEVLELAGNE 281 (382)
T ss_pred HHHhccCCCCceeccCcch
Confidence 233 235677777777765
No 85
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=82.75 E-value=2.7 Score=35.43 Aligned_cols=61 Identities=18% Similarity=0.253 Sum_probs=46.8
Q ss_pred CeeecCCCcccc-CchHHHHHHHHhhC-CcceEe---c----cCcchhHHHHHHHHHcceeeEEeccCCc
Q 017543 119 GVPTAIPSEDTR-DNFTSHLYSALSQK-SIETFI---N----RGDEISQSLVDAIEASAISLIIFSEGYA 179 (369)
Q Consensus 119 dvFis~~~~d~r-~~F~~~L~~aL~~~-gi~~~~---~----~G~~i~~~l~~~ie~S~i~ivv~S~~y~ 179 (369)
.|||+|..+.-. ..-|-.|...|+.. |+.+.+ . .+.....=+.+.++++...|||.|+.+.
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~~ 71 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGYK 71 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccchh
Confidence 489999875433 24567788889999 999999 1 2556666788889999999999997643
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=82.37 E-value=0.94 Score=26.60 Aligned_cols=17 Identities=29% Similarity=0.485 Sum_probs=11.1
Q ss_pred CCCCCEEEeecCCCccc
Q 017543 315 AANIEEMFLNGTAIEEL 331 (369)
Q Consensus 315 L~~L~~L~Ls~n~l~~L 331 (369)
|++|+.|+|+.|+|+.+
T Consensus 1 L~~L~~L~L~~NkI~~I 17 (26)
T smart00365 1 LTNLEELDLSQNKIKKI 17 (26)
T ss_pred CCccCEEECCCCcccee
Confidence 35677777777776544
No 87
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.30 E-value=0.29 Score=43.84 Aligned_cols=57 Identities=25% Similarity=0.369 Sum_probs=25.9
Q ss_pred ccCccEEEccCCCCCCcCC-C-CC-CCCCCCEEEeecC-CCccc-CccccCCCCCcEEeccc
Q 017543 292 LEFLKELDLSGCSKLKRLP-D-IS-SAANIEEMFLNGT-AIEEL-PSSIECLYKLLHLDLED 348 (369)
Q Consensus 292 L~~L~~L~Ls~~~~l~~lP-~-i~-~L~~L~~L~Ls~n-~l~~L-P~~i~~L~~L~~L~Ls~ 348 (369)
++.|+.|.+.+|..+...- + ++ -.++|+.|+|++| .|++- -..+.++++|+-|.|.+
T Consensus 124 l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 124 LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 4444445555544333221 1 22 2345555555555 45422 13345555555555543
No 88
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=70.88 E-value=6.3 Score=37.21 Aligned_cols=83 Identities=22% Similarity=0.259 Sum_probs=52.6
Q ss_pred CccccceeeEEeecCCCCCCCcCcc--------------c-cccCccEEEccCCCCCCcCCC------CCCCCCCCEEEe
Q 017543 265 FSQHLNTLVVLNLRDCKSLKSLPAG--------------I-HLEFLKELDLSGCSKLKRLPD------ISSAANIEEMFL 323 (369)
Q Consensus 265 ~~~~l~~L~~L~L~~n~~l~~lP~~--------------i-~L~~L~~L~Ls~~~~l~~lP~------i~~L~~L~~L~L 323 (369)
++..-+.|..|.|++| .++.+... . +-+.|++..... |.+...|. +..-.+|+.+-+
T Consensus 115 ~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr-NRlengs~~~~a~~l~sh~~lk~vki 192 (388)
T COG5238 115 LISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR-NRLENGSKELSAALLESHENLKEVKI 192 (388)
T ss_pred HHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc-chhccCcHHHHHHHHHhhcCceeEEe
Confidence 3445567888888877 45543321 1 235677777776 45555552 222257888888
Q ss_pred ecCCCcccCc--------cccCCCCCcEEecccCCC
Q 017543 324 NGTAIEELPS--------SIECLYKLLHLDLEDCKS 351 (369)
Q Consensus 324 s~n~l~~LP~--------~i~~L~~L~~L~Ls~n~~ 351 (369)
-.|.|. |. .+.-+.+|+.|||.+|.+
T Consensus 193 ~qNgIr--pegv~~L~~~gl~y~~~LevLDlqDNtf 226 (388)
T COG5238 193 QQNGIR--PEGVTMLAFLGLFYSHSLEVLDLQDNTF 226 (388)
T ss_pred eecCcC--cchhHHHHHHHHHHhCcceeeeccccch
Confidence 888876 33 334678999999998863
No 89
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=70.40 E-value=2 Score=24.17 Aligned_cols=14 Identities=29% Similarity=0.434 Sum_probs=5.9
Q ss_pred CCCCEEEeecCCCc
Q 017543 316 ANIEEMFLNGTAIE 329 (369)
Q Consensus 316 ~~L~~L~Ls~n~l~ 329 (369)
++|+.|+|++|.|.
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34555555555443
No 90
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.09 E-value=0.83 Score=40.95 Aligned_cols=60 Identities=23% Similarity=0.418 Sum_probs=43.5
Q ss_pred ccccceeeEEeecCCCCCCCcCc-cc--cccCccEEEccCCCCCCcCC-C-CCCCCCCCEEEeec
Q 017543 266 SQHLNTLVVLNLRDCKSLKSLPA-GI--HLEFLKELDLSGCSKLKRLP-D-ISSAANIEEMFLNG 325 (369)
Q Consensus 266 ~~~l~~L~~L~L~~n~~l~~lP~-~i--~L~~L~~L~Ls~~~~l~~lP-~-i~~L~~L~~L~Ls~ 325 (369)
+.+++.++.|.+.+|..+...-- .+ -.++|+.|+|++|..|++-- . +.+++||+.|.|.+
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 34566777888888865432111 11 46899999999999998876 3 88899999998765
No 91
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=69.62 E-value=0.83 Score=45.18 Aligned_cols=84 Identities=25% Similarity=0.370 Sum_probs=40.4
Q ss_pred ccceeeEEeecCCCCCCCcCccc---cccCccEEEccCCCCCCcC--CC-CCCCCCCCEEEeecC-CCc-----ccCccc
Q 017543 268 HLNTLVVLNLRDCKSLKSLPAGI---HLEFLKELDLSGCSKLKRL--PD-ISSAANIEEMFLNGT-AIE-----ELPSSI 335 (369)
Q Consensus 268 ~l~~L~~L~L~~n~~l~~lP~~i---~L~~L~~L~Ls~~~~l~~l--P~-i~~L~~L~~L~Ls~n-~l~-----~LP~~i 335 (369)
+..+|++|.+..|..++..--.. +...|+.|++-.|..+..- -. -.+++.|+.|.|+.+ .|+ .+-.+-
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~ 397 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS 397 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc
Confidence 34455555555554333222111 3455555555554433221 11 124566666666655 222 123333
Q ss_pred cCCCCCcEEecccCCC
Q 017543 336 ECLYKLLHLDLEDCKS 351 (369)
Q Consensus 336 ~~L~~L~~L~Ls~n~~ 351 (369)
..+..|..|-|++|+.
T Consensus 398 c~~~~l~~lEL~n~p~ 413 (483)
T KOG4341|consen 398 CSLEGLEVLELDNCPL 413 (483)
T ss_pred ccccccceeeecCCCC
Confidence 4566677777777764
No 92
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=66.02 E-value=1.9 Score=42.67 Aligned_cols=60 Identities=20% Similarity=0.291 Sum_probs=29.7
Q ss_pred cccCccEEEccCCCCCCcC-----CC-CCCCCCCCEEEeecCCCc--ccCccccCCCCCcEEecccCC
Q 017543 291 HLEFLKELDLSGCSKLKRL-----PD-ISSAANIEEMFLNGTAIE--ELPSSIECLYKLLHLDLEDCK 350 (369)
Q Consensus 291 ~L~~L~~L~Ls~~~~l~~l-----P~-i~~L~~L~~L~Ls~n~l~--~LP~~i~~L~~L~~L~Ls~n~ 350 (369)
+.+.|++|.|++|..++.. -. -+.+..|+.|.|+++.+. ..-+.+.+..+|+.+++.+|+
T Consensus 370 ~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred CCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 4555666666655544433 11 234555666666665332 222334445555555555554
No 93
>PF13271 DUF4062: Domain of unknown function (DUF4062)
Probab=59.87 E-value=37 Score=25.56 Aligned_cols=63 Identities=14% Similarity=0.160 Sum_probs=45.6
Q ss_pred CeeecCCCccccCchHHHHHHHHhhCCcceEe-----ccCcchhHHHHHHHHHcceeeEEeccCCcccc
Q 017543 119 GVPTAIPSEDTRDNFTSHLYSALSQKSIETFI-----NRGDEISQSLVDAIEASAISLIIFSEGYASSR 182 (369)
Q Consensus 119 dvFis~~~~d~r~~F~~~L~~aL~~~gi~~~~-----~~G~~i~~~l~~~ie~S~i~ivv~S~~y~~S~ 182 (369)
.||||=.-.|++. --..|...+.+.|..... ..+....+..++.|++|.+.|.++-..|....
T Consensus 1 rVFiSSt~~Dl~~-eR~~l~~~i~~~~~~~~~~e~~~a~~~~~~~~cl~~v~~cDifI~ilG~rYG~~~ 68 (83)
T PF13271_consen 1 RVFISSTFRDLKE-ERDALIEAIRRLGCEPVGMEFFPASDQSPLEICLKEVDECDIFILILGNRYGSVP 68 (83)
T ss_pred CEEEecChhhHHH-HHHHHHHHHHHCCCeeeeeeeecCCCCCHHHHHHHHHhhCCEEEEeeccccCCCC
Confidence 3788877777651 224477777766665544 45677777889999999999999998887543
No 94
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=59.60 E-value=6.5 Score=26.30 Aligned_cols=16 Identities=44% Similarity=0.518 Sum_probs=14.0
Q ss_pred CCChHHHHhHhhhhhh
Q 017543 18 PADPEEELRWMSQEVR 33 (369)
Q Consensus 18 ~~~~~~~~~~~~~~~~ 33 (369)
-+||||+-|.|-|+|-
T Consensus 10 k~DPeE~k~kmR~dvi 25 (51)
T PF15178_consen 10 KMDPEEMKRKMREDVI 25 (51)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4799999999999984
No 95
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=58.04 E-value=6 Score=40.61 Aligned_cols=61 Identities=26% Similarity=0.373 Sum_probs=40.3
Q ss_pred ccceeeEEeecCCCCCCCcCc--cc--cccCccEEEccCCC-CCCcCCCCCCC--CCCCEEEeecCCCc
Q 017543 268 HLNTLVVLNLRDCKSLKSLPA--GI--HLEFLKELDLSGCS-KLKRLPDISSA--ANIEEMFLNGTAIE 329 (369)
Q Consensus 268 ~l~~L~~L~L~~n~~l~~lP~--~i--~L~~L~~L~Ls~~~-~l~~lP~i~~L--~~L~~L~Ls~n~l~ 329 (369)
+.+.+..++|++| .+..|-. .+ ..++|+.|+|++|. .+...+++.++ .-|++|.|.+|.|.
T Consensus 216 n~p~i~sl~lsnN-rL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNN-RLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccc-hhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 4567788889888 4554432 12 57889999999852 45555553332 23789999999876
No 96
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=52.59 E-value=10 Score=22.36 Aligned_cols=12 Identities=17% Similarity=0.396 Sum_probs=6.6
Q ss_pred CCCEEEeecCCC
Q 017543 317 NIEEMFLNGTAI 328 (369)
Q Consensus 317 ~L~~L~Ls~n~l 328 (369)
+|++|+|++|.|
T Consensus 3 ~L~~LdL~~N~i 14 (28)
T smart00368 3 SLRELDLSNNKL 14 (28)
T ss_pred ccCEEECCCCCC
Confidence 455555555554
No 97
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=49.63 E-value=12 Score=21.37 Aligned_cols=13 Identities=62% Similarity=1.160 Sum_probs=6.6
Q ss_pred CccEEEccCCCCC
Q 017543 294 FLKELDLSGCSKL 306 (369)
Q Consensus 294 ~L~~L~Ls~~~~l 306 (369)
+|+.|+|++|..+
T Consensus 3 ~L~~L~l~~C~~i 15 (26)
T smart00367 3 NLRELDLSGCTNI 15 (26)
T ss_pred CCCEeCCCCCCCc
Confidence 4555555555443
No 98
>PF08945 Bclx_interact: Bcl-x interacting, BH3 domain; InterPro: IPR015040 Apoptosis, or programmed cell death (PCD), is a common and evolutionarily conserved property of all metazoans []. In many biological processes, apoptosis is required to eliminate supernumerary or dangerous (such as pre-cancerous) cells and to promote normal development. Dysregulation of apoptosis can, therefore, contribute to the development of many major diseases including cancer, autoimmunity and neurodegenerative disorders. In most cases, proteins of the caspase family execute the genetic programme that leads to cell death. Bcl-2 proteins are central regulators of caspase activation, and play a key role in cell death by regulating the integrity of the mitochondrial and endoplasmic reticulum (ER) membranes []. At least 20 Bcl-2 proteins have been reported in mammals, and several others have been identified in viruses. Bcl-2 family proteins fall roughly into three subtypes, which either promote cell survival (anti-apoptotic) or trigger cell death (pro-apoptotic). All members contain at least one of four conserved motifs, termed Bcl-2 Homology (BH) domains. Bcl-2 subfamily proteins, which contain at least BH1 and BH2, promote cell survival by inhibiting the adapters needed for the activation of caspases. Pro-apoptotic members potentially exert their effects by displacing the adapters from the pro-survival proteins; these proteins belong either to the Bax subfamily, which contain BH1-BH3, or to the BH3 subfamily, which mostly only feature BH3 []. Thus, the balance between antagonistic family members is believed to play a role in determining cell fate. Members of the wider Bcl-2 family, which also includes Bcl-x, Bcl-w and Mcl-1, are described by their similarity to Bcl-2 protein, a member of the pro-survival Bcl-2 subfamily []. Full-length Bcl-2 proteins feature all four BH domains, seven alpha-helices, and a C-terminal hydrophobic motif that targets the protein to the outer mitochondrial membrane, ER and nuclear envelope. Members of this entry induce apoptosis. The isoform BimL is more potent than the isoform BimEL. They form heterodimers with a number of antiapoptotic Bcl-2 proteins including Mcl-1, Bcl-2, Bcl-X(L), BFL-1, and BHRF1, but do not heterodimerise with proapoptotic proteins such as BAD, BOK, BAX or BAK. They are peripheral membrane proteins, associated with intracytoplasmic membranes. The BH3 motif is required for Bcl-2 binding and cytotoxicity. After antigen-driven expansion, the majority of T cells involved in an immune response die rapidly by apoptosis dependent on the Bcl-2 related proteins; Bim and Bax or Bak []. Bcl-xL regulates Bax and Bim is an important regulator of bcl-x deficiency induced cell death during hematopoiesis and testicular development in mice []. Bim(L) displaces Bcl-x(L) in the mitochondria and promotes Bax translocation during TNFalpha-induced apoptosis []. A potent inhibitor of antiapoptotic Bcl-2 family members, including Bcl-X(L), is AT-101 []. The immunophilin protein FKBP8 and its splice variant are Bcl-XL-interacting proteins and regulate the apoptotic signalling pathways in the RPE []. This protein is a long alpha helix, required for interaction with Bcl-x. It is found in BAM, Bim and Bcl2-like protein 11 []. ; PDB: 2NL9_B 2V6Q_B 3KJ0_B 3KJ1_B 3FDL_B 3D7V_B 3IO8_D 2K7W_B 2VM6_B 3IO9_B ....
Probab=40.47 E-value=13 Score=23.80 Aligned_cols=8 Identities=50% Similarity=1.290 Sum_probs=7.1
Q ss_pred Hhhhhhhc
Q 017543 27 WMSQEVRE 34 (369)
Q Consensus 27 ~~~~~~~~ 34 (369)
|+|||.|-
T Consensus 19 wiAqELRR 26 (40)
T PF08945_consen 19 WIAQELRR 26 (40)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999985
No 99
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=37.63 E-value=16 Score=37.63 Aligned_cols=62 Identities=21% Similarity=0.206 Sum_probs=44.4
Q ss_pred cccCccEEEccCCCCCCcCCC----CCCCCCCCEEEeecC--CCcccCccccCCC--CCcEEecccCCCCCc
Q 017543 291 HLEFLKELDLSGCSKLKRLPD----ISSAANIEEMFLNGT--AIEELPSSIECLY--KLLHLDLEDCKSLKS 354 (369)
Q Consensus 291 ~L~~L~~L~Ls~~~~l~~lP~----i~~L~~L~~L~Ls~n--~l~~LP~~i~~L~--~L~~L~Ls~n~~l~~ 354 (369)
+.+.+..++|++ |.+..+-. -...++|..|+|++| .+...+ ++++++ .|+.|-+.||++...
T Consensus 216 n~p~i~sl~lsn-NrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~-el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSN-NRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES-ELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeeccc-chhhchhhhhHHHHhcchhheeecccchhhhcchh-hhhhhcCCCHHHeeecCCccccc
Confidence 577788888998 66666654 235689999999999 555443 455555 478999999985443
No 100
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=36.63 E-value=9.6 Score=37.94 Aligned_cols=83 Identities=28% Similarity=0.426 Sum_probs=56.6
Q ss_pred cceeeEEeecCCCCCCC--cCccc-cccCccEEEccC-CCCCCcCC----C-CCCCCCCCEEEeecCC-CcccC-ccc-c
Q 017543 269 LNTLVVLNLRDCKSLKS--LPAGI-HLEFLKELDLSG-CSKLKRLP----D-ISSAANIEEMFLNGTA-IEELP-SSI-E 336 (369)
Q Consensus 269 l~~L~~L~L~~n~~l~~--lP~~i-~L~~L~~L~Ls~-~~~l~~lP----~-i~~L~~L~~L~Ls~n~-l~~LP-~~i-~ 336 (369)
++.|+.|.+.+|..+.. +-... ..+.|+.|++++ |......+ . ...+.+|+.|+++.+. ++..= ..+ .
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 57788888888865654 22233 789999999998 34444444 1 3456889999999886 55221 122 2
Q ss_pred CCCCCcEEecccCCC
Q 017543 337 CLYKLLHLDLEDCKS 351 (369)
Q Consensus 337 ~L~~L~~L~Ls~n~~ 351 (369)
.+++|++|.+.+|..
T Consensus 267 ~c~~L~~L~l~~c~~ 281 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSN 281 (482)
T ss_pred hCCCcceEccCCCCc
Confidence 378999999887763
No 101
>COG4916 Uncharacterized protein containing a TIR (Toll-Interleukin 1-resistance) domain [Function unknown]
Probab=31.71 E-value=50 Score=30.71 Aligned_cols=75 Identities=9% Similarity=0.019 Sum_probs=50.0
Q ss_pred CCeeecCCCccccCchHHHHHHHHh--hCCcceEe--ccCcch----hHHHHHHH--HHcceeeEEeccCCccccccccc
Q 017543 118 EGVPTAIPSEDTRDNFTSHLYSALS--QKSIETFI--NRGDEI----SQSLVDAI--EASAISLIIFSEGYASSRWFFDK 187 (369)
Q Consensus 118 ~dvFis~~~~d~r~~F~~~L~~aL~--~~gi~~~~--~~G~~i----~~~l~~~i--e~S~i~ivv~S~~y~~S~~cl~E 187 (369)
||+=+||.||. ...|......+. ...+..|+ ..-..+ .+.++.-+ +.|++.+|....||..+.||--|
T Consensus 178 ~DiG~SFaGEA--R~LVEqV~~E~~~~~~p~~~FYD~~~~~~L~~~sL~~~L~~~Y~~rC~~~~VF~~~~Y~~K~~c~~E 255 (329)
T COG4916 178 VDSGISFAGEA--RNLVEQVQTEHSGLDIPTRRFYDLLVAHPLYPGSLVSTLDPGYDIRCVVTTVFNTGSYICKSTCHIE 255 (329)
T ss_pred cceeeEeehhh--hhHHHHHHHhhhcccCCceeeeechhhccccCccHHHhcccccCceEEEEEEEeCCceEEeeeeccc
Confidence 47889999996 467777777776 44557777 111111 12333333 35788888888999999999888
Q ss_pred ceeeEEe
Q 017543 188 LVKILQC 194 (369)
Q Consensus 188 Lv~i~~~ 194 (369)
...|.+.
T Consensus 256 ~~~~r~~ 262 (329)
T COG4916 256 GLEGRLN 262 (329)
T ss_pred hhhcccc
Confidence 7666543
No 102
>PHA02920 putative virulence factor; Provisional
Probab=30.28 E-value=48 Score=26.38 Aligned_cols=57 Identities=23% Similarity=0.296 Sum_probs=38.2
Q ss_pred CccccCCCCCccccccCCCChHHHHhHhhhhhhccCCCCCCCCCCchhHHHHhhhcC
Q 017543 1 MMRQSLSDGSLDTMARRPADPEEELRWMSQEVRESSPRTSAASGDDWRSAFDAAANG 57 (369)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (369)
.|+-+.+||+.=.-+.-|+.|+|+..-|-.=+.-.++....-+.-.|...|+...+-
T Consensus 45 nMkltL~DGPrLdkL~e~~~~~e~~k~~Iglca~lAekV~~~~eI~Wd~vf~~LF~~ 101 (117)
T PHA02920 45 NMRMTLSDGPLLDRLNQPVNNVEDVKRMIAISAKVARDIGERSEIRWEESFTILFRM 101 (117)
T ss_pred cceecccCCccccccccccCcHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHH
Confidence 488899999988888999999999554432222122222222356799999987753
Done!