Query 017543
Match_columns 369
No_of_seqs 344 out of 2632
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 16:07:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017543.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017543hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jrn_A AT1G72930 protein; TIR 100.0 6.1E-37 2.1E-41 266.3 -1.3 139 117-257 8-151 (176)
2 3ozi_A L6TR; plant TIR domain, 100.0 3.2E-36 1.1E-40 266.0 2.4 141 117-259 35-181 (204)
3 3h16_A TIR protein; bacteria T 99.9 6.1E-24 2.1E-28 182.2 4.3 112 118-230 21-137 (154)
4 3ub2_A TOLL/interleukin-1 rece 99.7 2.6E-19 8.8E-24 151.7 -4.1 125 119-246 12-145 (146)
5 1fyx_A TOLL-like receptor 2; b 99.6 3.6E-17 1.2E-21 139.1 2.6 94 116-211 4-107 (149)
6 2j67_A TOLL like receptor 10; 99.6 3.9E-16 1.3E-20 136.4 3.4 91 117-209 35-134 (178)
7 1t3g_A X-linked interleukin-1 99.6 3.6E-16 1.2E-20 134.3 2.4 94 117-210 2-113 (159)
8 2js7_A Myeloid differentiation 99.5 2.4E-16 8E-21 135.6 -2.9 92 118-211 17-117 (160)
9 4fcg_A Uncharacterized protein 99.4 1.9E-13 6.6E-18 130.4 10.2 111 255-368 193-306 (328)
10 4fcg_A Uncharacterized protein 99.4 2.2E-13 7.6E-18 130.0 8.2 119 246-368 129-258 (328)
11 3e6j_A Variable lymphocyte rec 99.4 1.4E-12 4.9E-17 117.9 10.1 118 246-368 42-164 (229)
12 4b8c_D Glucose-repressible alc 99.3 7.8E-13 2.7E-17 139.4 7.1 100 266-368 220-321 (727)
13 2v70_A SLIT-2, SLIT homolog 2 99.3 2.6E-12 9E-17 115.5 9.0 112 255-368 42-158 (220)
14 2ell_A Acidic leucine-rich nuc 99.3 1.6E-12 5.6E-17 111.3 6.8 117 246-368 26-152 (168)
15 2je0_A Acidic leucine-rich nuc 99.3 1.2E-12 4E-17 110.0 4.7 118 245-368 18-145 (149)
16 1w8a_A SLIT protein; signaling 99.3 8.9E-12 3.1E-16 109.5 10.5 96 271-368 30-131 (192)
17 2wfh_A SLIT homolog 2 protein 99.3 1.2E-11 4.1E-16 109.0 11.1 107 255-368 20-131 (193)
18 3m19_A Variable lymphocyte rec 99.3 1E-11 3.5E-16 113.5 10.3 118 246-368 61-184 (251)
19 3e6j_A Variable lymphocyte rec 99.3 1.9E-11 6.5E-16 110.4 11.2 107 255-368 29-140 (229)
20 2v9t_B SLIT homolog 2 protein 99.3 1E-11 3.6E-16 111.6 9.1 110 255-368 42-157 (220)
21 1dce_A Protein (RAB geranylger 99.3 9.4E-12 3.2E-16 127.5 9.1 109 254-368 450-565 (567)
22 1ogq_A PGIP-2, polygalacturona 99.3 1.6E-12 5.6E-17 123.0 3.2 120 246-368 78-202 (313)
23 1p9a_G Platelet glycoprotein I 99.2 2.4E-11 8.1E-16 113.9 11.0 109 255-368 87-200 (290)
24 2o6s_A Variable lymphocyte rec 99.2 2.2E-11 7.5E-16 107.9 10.1 98 267-367 49-152 (208)
25 3m19_A Variable lymphocyte rec 99.2 2.4E-11 8.3E-16 111.0 10.3 117 247-368 38-160 (251)
26 2ell_A Acidic leucine-rich nuc 99.2 2.5E-11 8.5E-16 103.8 8.9 97 269-368 23-125 (168)
27 1a9n_A U2A', U2A'; complex (nu 99.2 1.1E-11 3.9E-16 107.1 6.5 107 255-368 29-145 (176)
28 1a9n_A U2A', U2A'; complex (nu 99.2 2.5E-11 8.5E-16 104.9 8.4 99 267-368 16-118 (176)
29 2je0_A Acidic leucine-rich nuc 99.2 1.9E-11 6.5E-16 102.4 7.4 98 268-368 15-118 (149)
30 2o6r_A Variable lymphocyte rec 99.2 7.2E-11 2.5E-15 101.9 11.0 85 267-353 49-138 (177)
31 4g8a_A TOLL-like receptor 4; l 99.2 2E-11 6.7E-16 124.8 8.6 93 267-361 97-195 (635)
32 3rgz_A Protein brassinosteroid 99.2 9.8E-12 3.4E-16 131.6 6.4 76 293-368 632-709 (768)
33 2v9t_B SLIT homolog 2 protein 99.2 5.3E-11 1.8E-15 106.9 10.3 108 255-368 21-133 (220)
34 4b8c_D Glucose-repressible alc 99.2 7.6E-12 2.6E-16 131.8 5.4 102 255-360 234-337 (727)
35 2r9u_A Variable lymphocyte rec 99.2 5.1E-11 1.7E-15 103.2 9.6 99 254-359 21-124 (174)
36 3rfs_A Internalin B, repeat mo 99.2 6.1E-11 2.1E-15 109.7 10.3 119 246-368 87-210 (272)
37 4ezg_A Putative uncharacterize 99.2 4.4E-11 1.5E-15 105.3 8.6 99 266-368 84-186 (197)
38 1dce_A Protein (RAB geranylger 99.2 3.3E-11 1.1E-15 123.5 8.8 94 271-368 442-538 (567)
39 2xot_A Amphoterin-induced prot 99.2 4.5E-11 1.5E-15 115.3 9.3 88 266-356 84-179 (361)
40 2o6q_A Variable lymphocyte rec 99.2 6.8E-11 2.3E-15 109.2 10.1 118 246-368 63-186 (270)
41 2r9u_A Variable lymphocyte rec 99.2 8.6E-11 2.9E-15 101.8 10.0 92 273-368 15-110 (174)
42 2o6q_A Variable lymphocyte rec 99.2 1.4E-10 4.7E-15 107.1 11.4 118 246-368 87-210 (270)
43 2v70_A SLIT-2, SLIT homolog 2 99.2 1E-10 3.4E-15 105.1 10.2 108 255-368 21-134 (220)
44 1ozn_A Reticulon 4 receptor; N 99.2 7.5E-11 2.6E-15 109.5 9.5 100 266-368 125-230 (285)
45 1ogq_A PGIP-2, polygalacturona 99.2 9.3E-12 3.2E-16 117.8 3.3 120 246-368 103-226 (313)
46 4ezg_A Putative uncharacterize 99.2 3.5E-11 1.2E-15 105.9 6.7 108 255-368 54-164 (197)
47 3rgz_A Protein brassinosteroid 99.1 3.5E-11 1.2E-15 127.4 7.4 103 266-368 438-543 (768)
48 1p9a_G Platelet glycoprotein I 99.1 1.1E-10 3.7E-15 109.3 9.9 116 246-368 57-177 (290)
49 3g39_A Variable lymphocyte rec 99.1 1.4E-10 4.8E-15 99.9 9.6 94 254-353 18-116 (170)
50 2o6s_A Variable lymphocyte rec 99.1 2.2E-10 7.4E-15 101.4 11.0 97 269-368 27-129 (208)
51 3vq2_A TLR4, TOLL-like recepto 99.1 8.2E-11 2.8E-15 120.5 9.2 98 266-365 76-179 (606)
52 4g8a_A TOLL-like receptor 4; l 99.1 1E-10 3.4E-15 119.6 9.6 119 246-368 54-178 (635)
53 3rfs_A Internalin B, repeat mo 99.1 1.8E-10 6E-15 106.6 10.5 100 266-368 81-186 (272)
54 1ozn_A Reticulon 4 receptor; N 99.1 1.1E-10 3.6E-15 108.4 8.6 100 266-367 101-205 (285)
55 3g39_A Variable lymphocyte rec 99.1 2.9E-10 1E-14 97.9 10.8 93 272-368 11-107 (170)
56 1w8a_A SLIT protein; signaling 99.1 1.8E-10 6E-15 101.2 9.4 101 254-356 38-143 (192)
57 2z62_A TOLL-like receptor 4, v 99.1 1.3E-10 4.3E-15 107.4 8.6 118 246-367 54-177 (276)
58 3zyi_A Leucine-rich repeat-con 99.1 1.2E-10 4.1E-15 115.5 8.5 102 266-368 167-271 (452)
59 3zyj_A Leucine-rich repeat-con 99.1 1.2E-10 4.2E-15 115.0 8.5 101 267-368 157-260 (440)
60 4eco_A Uncharacterized protein 99.1 4.8E-11 1.6E-15 123.8 5.2 106 260-368 239-358 (636)
61 1xeu_A Internalin C; cellular 99.1 3.3E-10 1.1E-14 104.5 10.4 96 266-367 81-176 (263)
62 3o53_A Protein LRIM1, AGAP0063 99.1 8.3E-11 2.8E-15 111.2 6.4 100 266-368 140-242 (317)
63 1h6u_A Internalin H; cell adhe 99.1 2.3E-10 7.9E-15 107.9 9.4 97 266-368 81-178 (308)
64 2xwt_C Thyrotropin receptor; s 99.1 5.2E-11 1.8E-15 107.8 4.4 118 246-367 57-183 (239)
65 4eco_A Uncharacterized protein 99.1 1.3E-11 4.5E-16 128.0 0.4 119 245-368 250-382 (636)
66 2z63_A TOLL-like receptor 4, v 99.1 1.7E-10 5.8E-15 116.9 8.5 116 246-365 54-175 (570)
67 2z66_A Variable lymphocyte rec 99.1 2.1E-10 7.1E-15 107.5 8.3 101 266-368 146-253 (306)
68 2o6r_A Variable lymphocyte rec 99.1 2.8E-10 9.6E-15 98.1 8.4 107 255-368 17-129 (177)
69 3oja_A Leucine-rich immune mol 99.1 1E-10 3.4E-15 117.6 6.3 100 266-368 140-242 (487)
70 2z62_A TOLL-like receptor 4, v 99.1 2E-10 6.8E-15 106.1 7.8 91 267-360 97-197 (276)
71 3o6n_A APL1; leucine-rich repe 99.1 1.8E-10 6.2E-15 111.7 7.7 115 246-367 71-190 (390)
72 3oja_B Anopheles plasmodium-re 99.1 1.7E-10 5.7E-15 118.7 7.7 115 246-367 77-196 (597)
73 2z80_A TOLL-like receptor 2, v 99.1 3.8E-10 1.3E-14 108.1 9.7 120 245-368 53-179 (353)
74 2wfh_A SLIT homolog 2 protein 99.1 4.6E-10 1.6E-14 98.7 9.4 95 254-352 40-139 (193)
75 1h6u_A Internalin H; cell adhe 99.0 3.6E-10 1.2E-14 106.6 8.9 113 246-368 87-200 (308)
76 1h6t_A Internalin B; cell adhe 99.0 3.2E-10 1.1E-14 106.2 8.3 97 266-368 108-205 (291)
77 1xeu_A Internalin C; cellular 99.0 4.2E-10 1.5E-14 103.8 8.9 77 270-350 106-183 (263)
78 2z7x_B TOLL-like receptor 1, v 99.0 2.1E-10 7.2E-15 115.3 7.4 95 270-368 21-120 (520)
79 3zyj_A Leucine-rich repeat-con 99.0 3E-10 1E-14 112.2 8.2 120 245-368 161-284 (440)
80 3zyi_A Leucine-rich repeat-con 99.0 3.1E-10 1.1E-14 112.5 8.2 120 245-368 172-295 (452)
81 2z66_A Variable lymphocyte rec 99.0 4E-10 1.4E-14 105.5 8.5 114 255-368 111-228 (306)
82 1h6t_A Internalin B; cell adhe 99.0 5.5E-10 1.9E-14 104.5 9.4 97 266-368 86-183 (291)
83 2ifg_A High affinity nerve gro 99.0 4.2E-10 1.4E-14 107.4 8.6 92 256-352 20-116 (347)
84 3vq2_A TLR4, TOLL-like recepto 99.0 2.6E-10 8.8E-15 116.8 7.3 101 266-368 444-550 (606)
85 3v47_A TOLL-like receptor 5B a 99.0 2.9E-10 9.8E-15 112.2 7.2 95 266-361 75-176 (455)
86 3v47_A TOLL-like receptor 5B a 99.0 3.3E-10 1.1E-14 111.8 7.5 100 266-368 295-400 (455)
87 4ecn_A Leucine-rich repeat pro 99.0 8.3E-11 2.8E-15 126.0 3.2 105 260-368 481-600 (876)
88 3a79_B TLR6, VLRB.59, TOLL-lik 99.0 7.9E-10 2.7E-14 112.5 10.2 81 267-350 73-157 (562)
89 1ziw_A TOLL-like receptor 3; i 99.0 4.2E-10 1.4E-14 116.9 8.3 84 266-351 69-157 (680)
90 4ecn_A Leucine-rich repeat pro 99.0 9.4E-11 3.2E-15 125.6 3.1 111 249-364 496-619 (876)
91 2z80_A TOLL-like receptor 2, v 99.0 2E-10 6.9E-15 109.9 5.1 119 246-368 78-203 (353)
92 2xot_A Amphoterin-induced prot 99.0 8.2E-10 2.8E-14 106.4 9.2 113 253-368 47-168 (361)
93 3j0a_A TOLL-like receptor 5; m 99.0 4.7E-10 1.6E-14 119.9 8.1 121 246-368 50-179 (844)
94 1ds9_A Outer arm dynein; leuci 99.0 5.1E-12 1.7E-16 111.4 -6.0 89 266-356 66-157 (198)
95 3o53_A Protein LRIM1, AGAP0063 99.0 4.1E-11 1.4E-15 113.4 -0.1 119 246-367 146-266 (317)
96 2z81_A CD282 antigen, TOLL-lik 99.0 2.1E-10 7.3E-15 115.9 4.9 119 246-368 52-177 (549)
97 2xwt_C Thyrotropin receptor; s 99.0 1.8E-10 6.1E-15 104.2 3.9 121 245-368 81-210 (239)
98 2id5_A Lingo-1, leucine rich r 99.0 6.5E-10 2.2E-14 110.6 8.0 120 245-368 57-181 (477)
99 1xku_A Decorin; proteoglycan, 99.0 7.6E-10 2.6E-14 104.8 8.0 88 270-360 192-283 (330)
100 2z81_A CD282 antigen, TOLL-lik 99.0 1.2E-09 4E-14 110.4 9.8 120 245-368 27-153 (549)
101 4fmz_A Internalin; leucine ric 99.0 1.2E-09 4.3E-14 103.8 9.2 97 266-367 62-159 (347)
102 1m9s_A Internalin B; cell inva 99.0 1.5E-09 5E-14 112.0 10.4 97 266-368 83-180 (605)
103 2z63_A TOLL-like receptor 4, v 99.0 8.2E-10 2.8E-14 111.9 8.3 104 265-368 416-523 (570)
104 1m9s_A Internalin B; cell inva 99.0 1.1E-09 3.6E-14 113.1 8.7 113 246-368 89-202 (605)
105 3j0a_A TOLL-like receptor 5; m 98.9 1.1E-09 3.8E-14 117.0 9.0 122 245-368 25-153 (844)
106 4glp_A Monocyte differentiatio 98.9 2.6E-10 9E-15 107.3 3.4 98 266-368 193-299 (310)
107 2id5_A Lingo-1, leucine rich r 98.9 1.2E-09 4.3E-14 108.5 8.3 119 246-368 82-205 (477)
108 1wwl_A Monocyte differentiatio 98.9 6.7E-10 2.3E-14 104.7 6.0 101 248-350 99-212 (312)
109 3oja_B Anopheles plasmodium-re 98.9 1.8E-09 6.2E-14 110.9 9.5 46 256-303 134-181 (597)
110 3o6n_A APL1; leucine-rich repe 98.9 9.4E-10 3.2E-14 106.6 6.7 98 266-368 244-344 (390)
111 3t6q_A CD180 antigen; protein- 98.9 1.4E-09 4.9E-14 111.2 8.3 99 266-366 77-180 (606)
112 4ay9_X Follicle-stimulating ho 98.9 1.3E-09 4.5E-14 104.4 7.1 112 253-368 137-251 (350)
113 3bz5_A Internalin-J, INLJ; leu 98.9 2.2E-09 7.5E-14 106.9 9.0 100 256-368 53-153 (457)
114 1ds9_A Outer arm dynein; leuci 98.9 6.9E-12 2.3E-16 110.6 -8.4 98 266-368 44-145 (198)
115 2z7x_B TOLL-like receptor 1, v 98.9 2E-09 7E-14 108.1 8.5 98 267-368 371-473 (520)
116 3a79_B TLR6, VLRB.59, TOLL-lik 98.9 3.1E-09 1.1E-13 108.1 9.8 98 267-368 400-502 (562)
117 2ifg_A High affinity nerve gro 98.9 2.7E-09 9.3E-14 101.7 8.5 93 274-368 12-108 (347)
118 1wwl_A Monocyte differentiatio 98.9 7.6E-10 2.6E-14 104.3 4.3 100 268-368 93-206 (312)
119 1ziw_A TOLL-like receptor 3; i 98.9 3E-09 1E-13 110.4 9.0 120 245-368 26-150 (680)
120 3oja_A Leucine-rich immune mol 98.9 2E-10 6.7E-15 115.4 0.0 118 246-366 146-265 (487)
121 1xku_A Decorin; proteoglycan, 98.9 5.7E-09 2E-13 98.7 10.1 117 246-368 54-176 (330)
122 3cvr_A Invasion plasmid antige 98.9 3.9E-09 1.3E-13 108.1 9.5 89 269-367 139-234 (571)
123 1o6v_A Internalin A; bacterial 98.9 2.6E-09 9E-14 106.2 8.0 96 266-367 64-160 (466)
124 3bz5_A Internalin-J, INLJ; leu 98.9 5.8E-09 2E-13 103.9 10.4 109 246-368 66-175 (457)
125 2ft3_A Biglycan; proteoglycan, 98.9 4.3E-09 1.5E-13 99.8 8.8 81 266-350 74-158 (332)
126 3t6q_A CD180 antigen; protein- 98.9 4.8E-09 1.6E-13 107.3 9.8 110 256-368 289-405 (606)
127 2ft3_A Biglycan; proteoglycan, 98.9 6E-09 2.1E-13 98.7 9.6 104 256-368 44-152 (332)
128 4fmz_A Internalin; leucine ric 98.8 3.9E-09 1.3E-13 100.3 7.5 98 266-368 239-338 (347)
129 4glp_A Monocyte differentiatio 98.8 2.8E-09 9.6E-14 100.2 5.4 117 246-368 147-277 (310)
130 1o6v_A Internalin A; bacterial 98.8 1.2E-08 4E-13 101.5 8.3 96 267-368 43-139 (466)
131 3cvr_A Invasion plasmid antige 98.7 6.3E-09 2.1E-13 106.5 6.0 106 246-363 142-254 (571)
132 3g06_A SSPH2 (leucine-rich rep 98.7 3E-08 1E-12 102.6 10.7 89 270-368 201-289 (622)
133 1jl5_A Outer protein YOPM; leu 98.7 3.7E-08 1.3E-12 97.9 10.7 78 266-350 149-226 (454)
134 1jl5_A Outer protein YOPM; leu 98.7 6.6E-08 2.2E-12 96.1 10.5 84 270-360 131-215 (454)
135 2ast_B S-phase kinase-associat 98.7 6.4E-10 2.2E-14 105.2 -3.9 101 266-368 164-277 (336)
136 4ay9_X Follicle-stimulating ho 98.7 4E-08 1.4E-12 94.0 8.0 80 270-350 30-115 (350)
137 3g06_A SSPH2 (leucine-rich rep 98.6 8.7E-08 3E-12 99.1 10.3 86 270-362 61-163 (622)
138 2ast_B S-phase kinase-associat 98.6 4.1E-09 1.4E-13 99.6 -1.2 99 268-368 91-200 (336)
139 2ca6_A RAN GTPase-activating p 98.5 1.8E-08 6.1E-13 97.5 -0.2 36 315-350 273-314 (386)
140 3rw6_A Nuclear RNA export fact 98.3 1.4E-07 4.7E-12 87.3 1.5 98 268-368 139-256 (267)
141 2ca6_A RAN GTPase-activating p 98.3 1.4E-07 4.7E-12 91.2 0.9 102 266-368 183-308 (386)
142 3sb4_A Hypothetical leucine ri 98.2 2.4E-06 8.3E-11 80.7 7.1 95 269-368 225-326 (329)
143 3goz_A Leucine-rich repeat-con 98.0 1.1E-06 3.6E-11 84.4 0.9 101 266-368 46-172 (362)
144 3goz_A Leucine-rich repeat-con 97.9 1.6E-06 5.3E-11 83.2 0.9 96 270-368 109-230 (362)
145 3rw6_A Nuclear RNA export fact 97.9 6.3E-06 2.2E-10 76.1 3.6 77 268-346 168-258 (267)
146 1z7x_W Ribonuclease inhibitor; 97.8 7.8E-07 2.7E-11 87.5 -3.1 101 266-368 52-175 (461)
147 1z7x_W Ribonuclease inhibitor; 97.8 1.6E-06 5.5E-11 85.2 -1.8 99 268-368 225-346 (461)
148 3ogk_B Coronatine-insensitive 97.7 5.2E-06 1.8E-10 84.2 -0.1 98 268-368 190-298 (592)
149 2p1m_B Transport inhibitor res 97.7 3.3E-06 1.1E-10 85.7 -2.0 98 269-367 129-239 (594)
150 3ogk_B Coronatine-insensitive 97.7 2.2E-05 7.5E-10 79.6 3.9 101 267-368 217-323 (592)
151 3e4g_A ATP synthase subunit S, 97.6 2.1E-05 7.1E-10 68.0 2.4 83 270-354 61-154 (176)
152 3un9_A NLR family member X1; l 97.4 1.7E-05 5.7E-10 76.7 -0.3 100 267-368 123-244 (372)
153 3un9_A NLR family member X1; l 97.4 2.6E-05 8.8E-10 75.4 0.5 81 269-351 154-251 (372)
154 1io0_A Tropomodulin; LRR prote 97.4 2E-05 6.7E-10 68.4 -0.6 81 268-350 63-162 (185)
155 2p1m_B Transport inhibitor res 97.3 1.5E-05 5E-10 80.8 -2.3 99 268-368 103-216 (594)
156 3sb4_A Hypothetical leucine ri 97.1 0.00057 1.9E-08 64.2 6.6 86 256-346 237-328 (329)
157 1io0_A Tropomodulin; LRR prote 97.0 0.00015 5E-09 62.8 0.7 99 268-368 34-156 (185)
158 2ra8_A Uncharacterized protein 96.8 0.00031 1.1E-08 67.6 1.3 59 292-350 251-318 (362)
159 3rfe_A Platelet glycoprotein I 96.8 0.0021 7E-08 52.4 5.9 52 274-328 12-67 (130)
160 2ra8_A Uncharacterized protein 96.7 0.00033 1.1E-08 67.4 0.6 99 269-368 192-312 (362)
161 3e4g_A ATP synthase subunit S, 96.5 0.00096 3.3E-08 57.5 2.4 82 285-368 52-144 (176)
162 4fdw_A Leucine rich hypothetic 96.3 0.0093 3.2E-07 57.9 8.1 87 266-358 267-363 (401)
163 3rfe_A Platelet glycoprotein I 95.7 0.015 5E-07 47.2 5.7 51 297-350 12-66 (130)
164 4fdw_A Leucine rich hypothetic 95.7 0.027 9.2E-07 54.6 8.4 90 271-367 158-252 (401)
165 4fs7_A Uncharacterized protein 95.7 0.011 3.8E-07 56.8 5.5 97 266-369 293-394 (394)
166 4h09_A Hypothetical leucine ri 95.2 0.06 2.1E-06 51.0 8.9 54 291-346 261-317 (379)
167 4gt6_A Cell surface protein; l 94.1 0.088 3E-06 50.4 7.0 79 267-350 285-368 (394)
168 4gt6_A Cell surface protein; l 93.9 0.16 5.6E-06 48.4 8.5 96 266-368 261-362 (394)
169 4h09_A Hypothetical leucine ri 93.6 0.14 4.8E-06 48.4 7.4 78 266-347 259-341 (379)
170 1pgv_A TMD-1, tropomodulin TMD 89.8 0.077 2.6E-06 46.3 0.7 33 316-348 98-135 (197)
171 4fs7_A Uncharacterized protein 88.5 0.47 1.6E-05 45.2 5.3 74 266-344 316-393 (394)
172 1eiw_A Hypothetical protein MT 88.2 0.064 2.2E-06 42.3 -0.9 58 118-190 5-62 (111)
173 1pgv_A TMD-1, tropomodulin TMD 87.8 0.2 6.8E-06 43.6 1.9 58 293-350 41-109 (197)
174 1pq1_B BCL2-like protein 11; B 66.3 1.7 5.8E-05 25.5 0.6 8 27-34 7-14 (33)
175 3hyn_A Putative signal transdu 65.9 6.9 0.00024 33.3 4.6 52 154-208 67-118 (189)
176 3kj0_B BCL-2-like protein 11; 59.7 2.7 9.2E-05 23.4 0.6 8 27-34 9-16 (27)
177 2wh6_B BCL-2-like protein 11; 59.4 2.8 9.4E-05 23.2 0.6 8 27-34 7-14 (26)
178 1pd3_A Nonstructural protein N 48.2 6.7 0.00023 25.9 1.2 15 22-36 15-29 (58)
179 3ro3_B Minsc, peptide of prote 41.3 8.6 0.00029 20.4 0.7 8 22-29 14-21 (22)
180 2yvq_A Carbamoyl-phosphate syn 22.8 65 0.0022 25.8 3.4 31 118-150 25-55 (143)
181 1x41_A Transcriptional adaptor 21.1 54 0.0018 22.0 2.2 25 10-35 2-26 (60)
No 1
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=6.1e-37 Score=266.25 Aligned_cols=139 Identities=37% Similarity=0.630 Sum_probs=119.9
Q ss_pred CCCeeecCCCccccCchHHHHHHHHhhCCcceEe-----ccCcchhHHHHHHHHHcceeeEEeccCCcccccccccceee
Q 017543 117 YEGVPTAIPSEDTRDNFTSHLYSALSQKSIETFI-----NRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLVKI 191 (369)
Q Consensus 117 ~~dvFis~~~~d~r~~F~~~L~~aL~~~gi~~~~-----~~G~~i~~~l~~~ie~S~i~ivv~S~~y~~S~~cl~ELv~i 191 (369)
.|||||||+|+|+|+.|++|||.+|.++||++|+ .+|+.|.++|.+||++|+++|||||+||+.|.||++||++|
T Consensus 8 ~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL~~i 87 (176)
T 3jrn_A 8 KYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVTI 87 (176)
T ss_dssp CEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHHHHH
T ss_pred CCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHHHHH
Confidence 3599999999999999999999999999999999 68999999999999999999999999999999999999999
Q ss_pred EEeeeccCeEEeeeeeccCCCCccCCCCCccccchhhhhhhhcchhHHHHHHHhhhhhhhhhcccc
Q 017543 192 LQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQTWRNALKEKIISACNIF 257 (369)
Q Consensus 192 ~~~~~~~~l~vlPiFy~V~pS~Vr~q~g~fg~af~~~e~~~~~~~~~l~~W~~aL~~L~ll~~~~l 257 (369)
++|.++.++.|+||||+|+|++||+|+|.||++|.+++.. .+.+++++|+.||++++.+.+..+
T Consensus 88 ~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~ 151 (176)
T 3jrn_A 88 MDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCS 151 (176)
T ss_dssp HHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEEC
T ss_pred HhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceec
Confidence 9999889999999999999999999999999999999886 467899999999999988776554
No 2
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=3.2e-36 Score=265.98 Aligned_cols=141 Identities=35% Similarity=0.568 Sum_probs=131.1
Q ss_pred CCCeeecCCCccccCchHHHHHHHHhhCCcceEe-----ccCcchhHHHHHHHHHcceeeEEeccCCcccccccccceee
Q 017543 117 YEGVPTAIPSEDTRDNFTSHLYSALSQKSIETFI-----NRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLVKI 191 (369)
Q Consensus 117 ~~dvFis~~~~d~r~~F~~~L~~aL~~~gi~~~~-----~~G~~i~~~l~~~ie~S~i~ivv~S~~y~~S~~cl~ELv~i 191 (369)
.|||||||+|+|+|..|++|||.+|.++||++|+ .+|+.|.++|.+||++|+++|||||+||+.|.||++||++|
T Consensus 35 ~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~EL~~I 114 (204)
T 3ozi_A 35 EYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEI 114 (204)
T ss_dssp CCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHHHHHHH
T ss_pred CCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHHHHHHH
Confidence 3599999999999999999999999999999999 68999999999999999999999999999999999999999
Q ss_pred EEeeec-cCeEEeeeeeccCCCCccCCCCCccccchhhhhhhhcchhHHHHHHHhhhhhhhhhcccccC
Q 017543 192 LQCKRV-YGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQTWRNALKEKIISACNIFTK 259 (369)
Q Consensus 192 ~~~~~~-~~l~vlPiFy~V~pS~Vr~q~g~fg~af~~~e~~~~~~~~~l~~W~~aL~~L~ll~~~~l~~ 259 (369)
++|.++ .++.|+||||+|+|++||+|+|.||++|.+++..+. .+++++|+.||++++.+.+..+..
T Consensus 115 ~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~--~~~v~~Wr~AL~~va~lsG~~~~~ 181 (204)
T 3ozi_A 115 VRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFD--GQTIQNWKDALKKVGDLKGWHIGK 181 (204)
T ss_dssp HHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSC--HHHHHHHHHHHHHHHTSCBEEECT
T ss_pred HHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhC--HHHHHHHHHHHHHHhccCceecCC
Confidence 999864 579999999999999999999999999999998763 578999999999999887766554
No 3
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.88 E-value=6.1e-24 Score=182.16 Aligned_cols=112 Identities=17% Similarity=0.273 Sum_probs=105.1
Q ss_pred CCeeecCCCccccCchHHHHHHHHhhCCcceEe-----ccCcchhHHHHHHHHHcceeeEEeccCCcccccccccceeeE
Q 017543 118 EGVPTAIPSEDTRDNFTSHLYSALSQKSIETFI-----NRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLVKIL 192 (369)
Q Consensus 118 ~dvFis~~~~d~r~~F~~~L~~aL~~~gi~~~~-----~~G~~i~~~l~~~ie~S~i~ivv~S~~y~~S~~cl~ELv~i~ 192 (369)
|||||||+++| +..|+.||+.+|+++||++|+ ..|+.+.++|.++|++|++.|+|+|++|+.|.||++|+..++
T Consensus 21 ~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El~~~~ 99 (154)
T 3h16_A 21 HDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKELDGLF 99 (154)
T ss_dssp EEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHHHHHHT
T ss_pred ceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHHHHHHH
Confidence 39999999999 778999999999999999999 689999999999999999999999999999999999999999
Q ss_pred EeeeccCeEEeeeeeccCCCCccCCCCCccccchhhhh
Q 017543 193 QCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEE 230 (369)
Q Consensus 193 ~~~~~~~l~vlPiFy~V~pS~Vr~q~g~fg~af~~~e~ 230 (369)
+|....+..|+||||+|+|++|+++.|.|+++|.....
T Consensus 100 ~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~~ 137 (154)
T 3h16_A 100 QLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNTS 137 (154)
T ss_dssp CCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEETT
T ss_pred HHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhcC
Confidence 98877788999999999999999999999988875543
No 4
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.70 E-value=2.6e-19 Score=151.75 Aligned_cols=125 Identities=19% Similarity=0.278 Sum_probs=86.9
Q ss_pred CeeecCCCccccCchHHHHHHHHhh--CCcceEe-----ccCcchhHHHHHHHHHcceeeEEeccCCcccccccccceee
Q 017543 119 GVPTAIPSEDTRDNFTSHLYSALSQ--KSIETFI-----NRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLVKI 191 (369)
Q Consensus 119 dvFis~~~~d~r~~F~~~L~~aL~~--~gi~~~~-----~~G~~i~~~l~~~ie~S~i~ivv~S~~y~~S~~cl~ELv~i 191 (369)
||||||+++|++ |+.+|+.+|++ .|+++|+ ..|+.|.+++.++|++|++.|+|+|+||+.|.||..|+..+
T Consensus 12 DvFISy~~~D~~--~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc~~El~~a 89 (146)
T 3ub2_A 12 DVCVCHSEEDLV--AAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKYQMLQA 89 (146)
T ss_dssp EEEEECCGGGHH--HHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHHHHHHHHH
T ss_pred eEEEeCChhhHH--HHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHHHHHHHHH
Confidence 999999999976 79999999998 5999998 78999999999999999999999999999999999999988
Q ss_pred EEee-eccCeEEeeeeeccCCCCccCCCCC-ccccchhhhhhhhcchhHHHHHHHhh
Q 017543 192 LQCK-RVYGQIVLPVFYGVDPAPVKWPTGS-YGDSFLKLEERFKENSEKLQTWRNAL 246 (369)
Q Consensus 192 ~~~~-~~~~l~vlPiFy~V~pS~Vr~q~g~-fg~af~~~e~~~~~~~~~l~~W~~aL 246 (369)
+.+. ...+ .|+|+||+|+++++...-.. ....+...+..|....+.+.+|..++
T Consensus 90 l~~~~~~~~-~vIpv~~~v~~~~lp~~Lr~~~~id~~~~d~~f~~l~~~v~~~~~~~ 145 (146)
T 3ub2_A 90 LTEAPGAEG-CTIPLLSGLSRAAYPPELRFMYYVDGRGPDGGFRQVKEAVMRYLQTL 145 (146)
T ss_dssp HHTSSSSSS-EEEEEECSCCGGGSCGGGGGSCCEETTSGGGGHHHHHHHHHHHHTTC
T ss_pred HHHHhhcCC-cEEEEEcCCChhhCCHHHhCeeeeeccChHhhHHHHHHHHHHHHHhc
Confidence 8765 3334 56799999986654321111 11222344455555566677776553
No 5
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.64 E-value=3.6e-17 Score=139.11 Aligned_cols=94 Identities=14% Similarity=0.214 Sum_probs=82.5
Q ss_pred CCCCeeecCCCccccCchHHH-HHHHHhhC--CcceEe-----ccCcchhHHHHHHHHHcceeeEEeccCCccccccccc
Q 017543 116 SYEGVPTAIPSEDTRDNFTSH-LYSALSQK--SIETFI-----NRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDK 187 (369)
Q Consensus 116 ~~~dvFis~~~~d~r~~F~~~-L~~aL~~~--gi~~~~-----~~G~~i~~~l~~~ie~S~i~ivv~S~~y~~S~~cl~E 187 (369)
..|||||||+++|. .|+.+ |+.+|++. |+++|+ ..|+.+.++|.++|++|++.|+|+|++|+.|.||+.|
T Consensus 4 ~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~~E 81 (149)
T 1fyx_A 4 IXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXKYE 81 (149)
T ss_dssp CCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHHHH
T ss_pred ccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHHHH
Confidence 34699999999997 69986 99999886 999999 7899999999999999999999999999999999999
Q ss_pred ceeeEE-eeeccCeEEeeeeec-cCC
Q 017543 188 LVKILQ-CKRVYGQIVLPVFYG-VDP 211 (369)
Q Consensus 188 Lv~i~~-~~~~~~l~vlPiFy~-V~p 211 (369)
+..++. +....+..++||||+ +.+
T Consensus 82 l~~a~~~~~~~~~~~vIpv~~~~i~~ 107 (149)
T 1fyx_A 82 LDFSHFRLFDENNDAAILILLEPIEK 107 (149)
T ss_dssp SCCSCCTTCGGGTTCCEEEESSCCCT
T ss_pred HHHHHHHHHhcCCCEEEEEEecCCCh
Confidence 998875 445566788999985 444
No 6
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.58 E-value=3.9e-16 Score=136.40 Aligned_cols=91 Identities=16% Similarity=0.229 Sum_probs=76.6
Q ss_pred CCCeeecCCCccccCchHH-HHHHHHhh--CCcceEe-----ccCcchhHHHHHHHHHcceeeEEeccCCcccccccccc
Q 017543 117 YEGVPTAIPSEDTRDNFTS-HLYSALSQ--KSIETFI-----NRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKL 188 (369)
Q Consensus 117 ~~dvFis~~~~d~r~~F~~-~L~~aL~~--~gi~~~~-----~~G~~i~~~l~~~ie~S~i~ivv~S~~y~~S~~cl~EL 188 (369)
.|||||||+++|. .|+. +|+.+|++ .|+++|+ ..|+.|.++|.++|++|++.|+|+|++|+.|.||..|+
T Consensus 35 ~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc~~El 112 (178)
T 2j67_A 35 RFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWCHYEF 112 (178)
T ss_dssp CEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGGGTHH
T ss_pred cceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccchHHHHH
Confidence 3499999999995 6997 49999988 8999999 78999999999999999999999999999999999999
Q ss_pred eeeEEe-eeccCeEEeeeeecc
Q 017543 189 VKILQC-KRVYGQIVLPVFYGV 209 (369)
Q Consensus 189 v~i~~~-~~~~~l~vlPiFy~V 209 (369)
..++.+ ..+.+..|+||||+-
T Consensus 113 ~~a~~~~~~~~~~~vIpV~~~~ 134 (178)
T 2j67_A 113 YFAHHNLFHENSDHIILILLEP 134 (178)
T ss_dssp HHTTCC-------CEEEEESSC
T ss_pred HHHHHHHHhcCCCEEEEEEecC
Confidence 887754 345567899999964
No 7
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.58 E-value=3.6e-16 Score=134.25 Aligned_cols=94 Identities=13% Similarity=0.131 Sum_probs=81.8
Q ss_pred CCCeeecCCCccc---------cCchHHHHHH-HHh-hCCcceEe-----ccCcchhHHHHHHHHHcceeeEEeccCCc-
Q 017543 117 YEGVPTAIPSEDT---------RDNFTSHLYS-ALS-QKSIETFI-----NRGDEISQSLVDAIEASAISLIIFSEGYA- 179 (369)
Q Consensus 117 ~~dvFis~~~~d~---------r~~F~~~L~~-aL~-~~gi~~~~-----~~G~~i~~~l~~~ie~S~i~ivv~S~~y~- 179 (369)
.|||||||+++|+ +..||.||+. .|+ +.|+++|+ ..|+.|.++|.++|++|+..|+|+|+||.
T Consensus 2 ~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~~ 81 (159)
T 1t3g_A 2 DYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYVV 81 (159)
T ss_dssp CBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHHH
T ss_pred CceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchhh
Confidence 3699999999997 4679999887 598 79999999 68999999999999999999999999997
Q ss_pred ccccccccceeeEEee-eccCeEEeeeeeccC
Q 017543 180 SSRWFFDKLVKILQCK-RVYGQIVLPVFYGVD 210 (369)
Q Consensus 180 ~S~~cl~ELv~i~~~~-~~~~l~vlPiFy~V~ 210 (369)
.|.||..|+..++.+. ...+..|+||++.-.
T Consensus 82 ~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~ 113 (159)
T 1t3g_A 82 RRGWSIFELETRLRNMLVTGEIKVILIECSEL 113 (159)
T ss_dssp TTTTHHHHHSHHHHHHHHTTSSEEEEEECSCC
T ss_pred cChHHHHHHHHHHHHHHhcCCCEEEEEEeccc
Confidence 9999999999888764 455678999988643
No 8
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.53 E-value=2.4e-16 Score=135.55 Aligned_cols=92 Identities=14% Similarity=0.110 Sum_probs=80.9
Q ss_pred CCeeecCCCccccCchHHHHHHHHhhC--CcceEe-----ccCcchhHHHHHHHH-HcceeeEEeccCCcccccccccce
Q 017543 118 EGVPTAIPSEDTRDNFTSHLYSALSQK--SIETFI-----NRGDEISQSLVDAIE-ASAISLIIFSEGYASSRWFFDKLV 189 (369)
Q Consensus 118 ~dvFis~~~~d~r~~F~~~L~~aL~~~--gi~~~~-----~~G~~i~~~l~~~ie-~S~i~ivv~S~~y~~S~~cl~ELv 189 (369)
|||||||+++| ..|+.+|+.+|.+. |+++|+ ..|+.+.+++.++|+ +|++.|+|+|++|+.|.||..|+.
T Consensus 17 yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~~El~ 94 (160)
T 2js7_A 17 FDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECDFQTK 94 (160)
T ss_dssp EEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHHHHHH
T ss_pred eEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHHHHHH
Confidence 49999999999 46999999999884 699998 689999999999999 799999999999999999999999
Q ss_pred eeEEee-eccCeEEeeeeeccCC
Q 017543 190 KILQCK-RVYGQIVLPVFYGVDP 211 (369)
Q Consensus 190 ~i~~~~-~~~~l~vlPiFy~V~p 211 (369)
.++.+. ...+..|+||||+..+
T Consensus 95 ~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 95 FALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp HHHHHCTTHHHHTEEEEESSCCC
T ss_pred HHHHHHHccCCCEEEEEEEcccc
Confidence 888764 3345689999997654
No 9
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.45 E-value=1.9e-13 Score=130.39 Aligned_cols=111 Identities=32% Similarity=0.519 Sum_probs=98.8
Q ss_pred ccccCCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCC-ccc
Q 017543 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAI-EEL 331 (369)
Q Consensus 255 ~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l-~~L 331 (369)
+.+..+|.. +..+++|+.|+|++| .+..+|..+ .+++|++|+|++|+..+.+|. ++.+++|++|+|++|.+ ..+
T Consensus 193 n~l~~lp~~--l~~l~~L~~L~L~~N-~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~ 269 (328)
T 4fcg_A 193 TGIRSLPAS--IANLQNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTL 269 (328)
T ss_dssp ECCCCCCGG--GGGCTTCCEEEEESS-CCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBC
T ss_pred CCcCcchHh--hcCCCCCCEEEccCC-CCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhc
Confidence 345566643 778999999999999 588899888 899999999999999999998 99999999999999855 589
Q ss_pred CccccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543 332 PSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI 368 (369)
Q Consensus 332 P~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L 368 (369)
|..++++++|++|+|++|++++.+|.++++|++|+.+
T Consensus 270 p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l 306 (328)
T 4fcg_A 270 PLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII 306 (328)
T ss_dssp CTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEE
T ss_pred chhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEE
Confidence 9999999999999999999999999999999998765
No 10
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.42 E-value=2.2e-13 Score=129.97 Aligned_cols=119 Identities=27% Similarity=0.414 Sum_probs=92.9
Q ss_pred hhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccc-c---------ccCccEEEccCCCCCCcCCC-CCC
Q 017543 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-H---------LEFLKELDLSGCSKLKRLPD-ISS 314 (369)
Q Consensus 246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~---------L~~L~~L~Ls~~~~l~~lP~-i~~ 314 (369)
|+.+.+.. +.+..+|.. +..+++|+.|++++|..++.+|..+ . +++|++|+|++ +.+..+|. +++
T Consensus 129 L~~L~Ls~-n~l~~lp~~--l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~-n~l~~lp~~l~~ 204 (328)
T 4fcg_A 129 LETLTLAR-NPLRALPAS--IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEW-TGIRSLPASIAN 204 (328)
T ss_dssp CSEEEEES-CCCCCCCGG--GGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEE-ECCCCCCGGGGG
T ss_pred CCEEECCC-CccccCcHH--HhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcC-CCcCcchHhhcC
Confidence 44444433 345566543 6778888888888876778888776 4 88888888888 45668887 888
Q ss_pred CCCCCEEEeecCCCcccCccccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543 315 AANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI 368 (369)
Q Consensus 315 L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L 368 (369)
+++|++|+|++|.+..+|..++++++|++|+|++|+..+.+|..+..+++|+.|
T Consensus 205 l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L 258 (328)
T 4fcg_A 205 LQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRL 258 (328)
T ss_dssp CTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEE
T ss_pred CCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEE
Confidence 888888988888888888888888889999998888888888888888888765
No 11
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.37 E-value=1.4e-12 Score=117.90 Aligned_cols=118 Identities=30% Similarity=0.399 Sum_probs=92.3
Q ss_pred hhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCC--CCCCCCCCEE
Q 017543 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEM 321 (369)
Q Consensus 246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L 321 (369)
++.+.+.. +.+..++. ..+..+++|+.|+|++| .++.+|... .+++|++|+|++ +.+..+|. +..+++|++|
T Consensus 42 L~~L~Ls~-n~i~~~~~-~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L 117 (229)
T 3e6j_A 42 AQILYLHD-NQITKLEP-GVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGT-NQLTVLPSAVFDRLVHLKEL 117 (229)
T ss_dssp CSEEECCS-SCCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEE
T ss_pred CCEEEcCC-CccCccCH-HHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCC-CcCCccChhHhCcchhhCeE
Confidence 33344433 44455432 23677899999999999 588888765 799999999998 56778875 7899999999
Q ss_pred EeecCCCcccCccccCCCCCcEEecccCCCCCcCCc-cccCCCCCCCC
Q 017543 322 FLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPS-GLFLCRNKCRI 368 (369)
Q Consensus 322 ~Ls~n~l~~LP~~i~~L~~L~~L~Ls~n~~l~~lP~-~i~~L~~L~~L 368 (369)
+|++|.|+.+|..++.+++|++|+|++|+ +..+|. .+..+++|+.|
T Consensus 118 ~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L 164 (229)
T 3e6j_A 118 FMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHA 164 (229)
T ss_dssp ECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred eccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEE
Confidence 99999999999999999999999999998 666664 46677777765
No 12
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.34 E-value=7.8e-13 Score=139.36 Aligned_cols=100 Identities=22% Similarity=0.302 Sum_probs=58.9
Q ss_pred ccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCcccCccccCCCCCcE
Q 017543 266 SQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSSIECLYKLLH 343 (369)
Q Consensus 266 ~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~ 343 (369)
+..+..|+.|+|++| .+..+|..+ .+++|++|+|++ |.+..+|. |++|++|++|+|++|.|+.||.+|++|++|++
T Consensus 220 ~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 220 KYDDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNG-NSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKY 297 (727)
T ss_dssp --CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTT-SCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSE
T ss_pred hccCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeC-CcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCE
Confidence 345556666666666 355666555 566666666665 34445665 66666666666666666666666666666666
Q ss_pred EecccCCCCCcCCccccCCCCCCCC
Q 017543 344 LDLEDCKSLKSLPSGLFLCRNKCRI 368 (369)
Q Consensus 344 L~Ls~n~~l~~lP~~i~~L~~L~~L 368 (369)
|+|++|. ++.||.+|+.|++|+.|
T Consensus 298 L~L~~N~-l~~lp~~~~~l~~L~~L 321 (727)
T 4b8c_D 298 FYFFDNM-VTTLPWEFGNLCNLQFL 321 (727)
T ss_dssp EECCSSC-CCCCCSSTTSCTTCCCE
T ss_pred EECCCCC-CCccChhhhcCCCccEE
Confidence 6666655 45666666666655554
No 13
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.33 E-value=2.6e-12 Score=115.51 Aligned_cols=112 Identities=15% Similarity=0.200 Sum_probs=80.0
Q ss_pred ccccCCCCCCCccccceeeEEeecCCCCCCCcCc-cc-cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCcc
Q 017543 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPA-GI-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEE 330 (369)
Q Consensus 255 ~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~-~i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~ 330 (369)
+.+..++....+..+++|+.|+|++| .+..++. .+ .+++|++|+|++ +.+..+|. ++.+++|++|+|++|.|+.
T Consensus 42 N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 119 (220)
T 2v70_A 42 NEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTS-NRLENVQHKMFKGLESLKTLMLRSNRITC 119 (220)
T ss_dssp SCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS-SCCCCCCGGGGTTCSSCCEEECTTSCCCC
T ss_pred CcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCC-CccCccCHhHhcCCcCCCEEECCCCcCCe
Confidence 44444433334567788888888888 4676665 45 788888888887 45666664 7788888888888888886
Q ss_pred c-CccccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543 331 L-PSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI 368 (369)
Q Consensus 331 L-P~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L 368 (369)
+ |..++.+++|++|+|++|++.+..|..+..+++|+.|
T Consensus 120 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 158 (220)
T 2v70_A 120 VGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTL 158 (220)
T ss_dssp BCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEE
T ss_pred ECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEE
Confidence 6 5667888888888888887554457777777777654
No 14
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.32 E-value=1.6e-12 Score=111.28 Aligned_cols=117 Identities=22% Similarity=0.338 Sum_probs=90.9
Q ss_pred hhhhhhhhccccc--CCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEE
Q 017543 246 LKEKIISACNIFT--KTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEM 321 (369)
Q Consensus 246 L~~L~ll~~~~l~--~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L 321 (369)
++.+....+. +. .+|.. +..+++|+.|++++| .+..+ ..+ .+++|++|+|++|.....+|. ++++++|++|
T Consensus 26 L~~L~l~~n~-l~~~~i~~~--~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 26 VRELVLDNCK-SNDGKIEGL--TAEFVNLEFLSLINV-GLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp CSEEECCSCB-CBTTBCSSC--CGGGGGCCEEEEESS-CCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred CCEEECCCCC-CChhhHHHH--HHhCCCCCEEeCcCC-CCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 4444454444 44 56543 678899999999999 47777 566 899999999998554333676 6779999999
Q ss_pred EeecCCCcccC--ccccCCCCCcEEecccCCCCCcCCc----cccCCCCCCCC
Q 017543 322 FLNGTAIEELP--SSIECLYKLLHLDLEDCKSLKSLPS----GLFLCRNKCRI 368 (369)
Q Consensus 322 ~Ls~n~l~~LP--~~i~~L~~L~~L~Ls~n~~l~~lP~----~i~~L~~L~~L 368 (369)
+|++|.|+.+| ..++.+++|++|++++|+ +..+|. .+..+++|+.|
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L 152 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYL 152 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEE
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEe
Confidence 99999999887 678999999999999998 667776 77788888776
No 15
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.30 E-value=1.2e-12 Score=109.96 Aligned_cols=118 Identities=24% Similarity=0.347 Sum_probs=94.1
Q ss_pred hhhhhhhhhcccc-cCCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCc-CCC-CCCCCCCCE
Q 017543 245 ALKEKIISACNIF-TKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKR-LPD-ISSAANIEE 320 (369)
Q Consensus 245 aL~~L~ll~~~~l-~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~-lP~-i~~L~~L~~ 320 (369)
.++.+....+... ..+|. .+..+++|+.|++++| .+..+ ..+ .+++|++|+|++|. +.. +|. ++.+++|++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~--~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEG--LTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNR-VSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GCSEEECTTCBCBTTBCCS--CCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSC-CCSCTHHHHHHCTTCCE
T ss_pred cCeEEEccCCcCChhHHHH--HHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCc-ccchHHHHhhhCCCCCE
Confidence 3455555554433 25554 3678999999999999 57777 566 89999999999955 555 777 778999999
Q ss_pred EEeecCCCcccC--ccccCCCCCcEEecccCCCCCcCCc----cccCCCCCCCC
Q 017543 321 MFLNGTAIEELP--SSIECLYKLLHLDLEDCKSLKSLPS----GLFLCRNKCRI 368 (369)
Q Consensus 321 L~Ls~n~l~~LP--~~i~~L~~L~~L~Ls~n~~l~~lP~----~i~~L~~L~~L 368 (369)
|+|++|.++.+| ..++.+++|++|++++|+ +..+|. .+..+++|+.|
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L 145 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYL 145 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEE
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccc
Confidence 999999999876 789999999999999998 666665 68888888876
No 16
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.30 E-value=8.9e-12 Score=109.54 Aligned_cols=96 Identities=23% Similarity=0.316 Sum_probs=50.6
Q ss_pred eeeEEeecCCCCCCCcCcc--c-cccCccEEEccCCCCCCcC-CC-CCCCCCCCEEEeecCCCcccCcc-ccCCCCCcEE
Q 017543 271 TLVVLNLRDCKSLKSLPAG--I-HLEFLKELDLSGCSKLKRL-PD-ISSAANIEEMFLNGTAIEELPSS-IECLYKLLHL 344 (369)
Q Consensus 271 ~L~~L~L~~n~~l~~lP~~--i-~L~~L~~L~Ls~~~~l~~l-P~-i~~L~~L~~L~Ls~n~l~~LP~~-i~~L~~L~~L 344 (369)
+|+.|++++| .+..+|.. + .+++|++|+|++| .+..+ |. ++++++|++|+|++|.|+.+|.. ++.+++|++|
T Consensus 30 ~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 107 (192)
T 1w8a_A 30 HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTL 107 (192)
T ss_dssp TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEE
T ss_pred CCCEEECCCC-cCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence 4555555555 35555442 3 5555566666553 33333 33 55555566666655555544433 4555556666
Q ss_pred ecccCCCCCcCCccccCCCCCCCC
Q 017543 345 DLEDCKSLKSLPSGLFLCRNKCRI 368 (369)
Q Consensus 345 ~Ls~n~~l~~lP~~i~~L~~L~~L 368 (369)
+|++|++.+..|..+..+++|+.|
T Consensus 108 ~L~~N~l~~~~~~~~~~l~~L~~L 131 (192)
T 1w8a_A 108 NLYDNQISCVMPGSFEHLNSLTSL 131 (192)
T ss_dssp ECCSSCCCEECTTSSTTCTTCCEE
T ss_pred ECCCCcCCeeCHHHhhcCCCCCEE
Confidence 665555444445555555555443
No 17
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.30 E-value=1.2e-11 Score=108.98 Aligned_cols=107 Identities=17% Similarity=0.282 Sum_probs=76.3
Q ss_pred ccccCCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCccc
Q 017543 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEEL 331 (369)
Q Consensus 255 ~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~L 331 (369)
+.+..+|.. + ..+|+.|+|++| .+..+|..+ .+++|++|+|++ +.+..+|. +.+|++|++|+|++|.|+.+
T Consensus 20 ~~l~~ip~~--~--~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~-N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i 93 (193)
T 2wfh_A 20 KGLKVLPKG--I--PRDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSN-NRISTLSNQSFSNMTQLLTLILSYNRLRCI 93 (193)
T ss_dssp SCCSSCCSC--C--CTTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred CCCCcCCCC--C--CCCCCEEECCCC-cCchhHHHhhcccCCCEEECCC-CcCCEeCHhHccCCCCCCEEECCCCccCEe
Confidence 345555542 2 356788888888 577888777 788888888887 55666663 78888888888888888877
Q ss_pred Cc-cccCCCCCcEEecccCCCCCcCCcc-ccCCCCCCCC
Q 017543 332 PS-SIECLYKLLHLDLEDCKSLKSLPSG-LFLCRNKCRI 368 (369)
Q Consensus 332 P~-~i~~L~~L~~L~Ls~n~~l~~lP~~-i~~L~~L~~L 368 (369)
|. .++.|++|++|+|++|+ +..+|.. +..+++|+.|
T Consensus 94 ~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L 131 (193)
T 2wfh_A 94 PPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHL 131 (193)
T ss_dssp CTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEE
T ss_pred CHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEE
Confidence 65 47788888888888877 5566664 5567766654
No 18
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.28 E-value=1e-11 Score=113.46 Aligned_cols=118 Identities=28% Similarity=0.401 Sum_probs=90.0
Q ss_pred hhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCC--CCCCCCCCEE
Q 017543 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEM 321 (369)
Q Consensus 246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L 321 (369)
|+.+.+.. +.+..++. ..+..+++|+.|+|++| .+..+|... .+++|++|+|++ +.+..+|. ++.+++|++|
T Consensus 61 L~~L~L~~-n~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L 136 (251)
T 3m19_A 61 LTWLNLDY-NQLQTLSA-GVFDDLTELGTLGLANN-QLASLPLGVFDHLTQLDKLYLGG-NQLKSLPSGVFDRLTKLKEL 136 (251)
T ss_dssp CCEEECTT-SCCCCCCT-TTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEE
T ss_pred CCEEECCC-CcCCccCH-hHhccCCcCCEEECCCC-cccccChhHhcccCCCCEEEcCC-CcCCCcChhHhccCCcccEE
Confidence 44444444 44555543 23567899999999999 577777654 799999999998 56778875 7889999999
Q ss_pred EeecCCCcccCc-cccCCCCCcEEecccCCCCCcCCc-cccCCCCCCCC
Q 017543 322 FLNGTAIEELPS-SIECLYKLLHLDLEDCKSLKSLPS-GLFLCRNKCRI 368 (369)
Q Consensus 322 ~Ls~n~l~~LP~-~i~~L~~L~~L~Ls~n~~l~~lP~-~i~~L~~L~~L 368 (369)
+|++|.|+.+|. .++.+++|++|+|++|+ +..+|. .+..+++|+.|
T Consensus 137 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L 184 (251)
T 3m19_A 137 RLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQTI 184 (251)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEE
T ss_pred ECcCCcCCccCHHHcCcCcCCCEEECCCCc-CCccCHHHHhCCCCCCEE
Confidence 999999998887 58899999999999998 445554 67777777765
No 19
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.27 E-value=1.9e-11 Score=110.44 Aligned_cols=107 Identities=26% Similarity=0.315 Sum_probs=91.0
Q ss_pred ccccCCCCCCCccccceeeEEeecCCCCCCCc-Cccc-cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCcc
Q 017543 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSL-PAGI-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEE 330 (369)
Q Consensus 255 ~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~l-P~~i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~ 330 (369)
..+..+|.. ..++|+.|+|++|. +..+ |..+ .+++|++|+|++ +.++.+|. +..+++|++|+|++|.|+.
T Consensus 29 ~~l~~ip~~----~~~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~-N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~ 102 (229)
T 3e6j_A 29 KRHASVPAG----IPTNAQILYLHDNQ-ITKLEPGVFDSLINLKELYLGS-NQLGALPVGVFDSLTQLTVLDLGTNQLTV 102 (229)
T ss_dssp SCCSSCCSC----CCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCcCccCCC----CCCCCCEEEcCCCc-cCccCHHHhhCccCCcEEECCC-CCCCCcChhhcccCCCcCEEECCCCcCCc
Confidence 445666643 24889999999994 6666 5556 899999999999 56788885 7999999999999999999
Q ss_pred cCcc-ccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543 331 LPSS-IECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI 368 (369)
Q Consensus 331 LP~~-i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L 368 (369)
+|.. ++.+++|++|+|++|+ +..+|..+..+++|+.|
T Consensus 103 l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L 140 (229)
T 3e6j_A 103 LPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHL 140 (229)
T ss_dssp CCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEE
T ss_pred cChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEE
Confidence 9876 5899999999999998 77999999999988876
No 20
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.27 E-value=1e-11 Score=111.56 Aligned_cols=110 Identities=24% Similarity=0.308 Sum_probs=83.8
Q ss_pred ccccCCCCCCCccccceeeEEeecCCCCCCCc-Cccc-cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCcc
Q 017543 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSL-PAGI-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEE 330 (369)
Q Consensus 255 ~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~l-P~~i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~ 330 (369)
+.+..++.. .+..+++|+.|+|++| .+..+ |..+ .+++|++|+|++ +.+..+|. +..+++|++|+|++|.|+.
T Consensus 42 n~i~~i~~~-~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~N~l~~ 118 (220)
T 2v9t_B 42 NTIKVIPPG-AFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYG-NKITELPKSLFEGLFSLQLLLLNANKINC 118 (220)
T ss_dssp SCCCEECTT-SSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CcCCCcCHh-HhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCC-CcCCccCHhHccCCCCCCEEECCCCCCCE
Confidence 445555432 2567888999999998 46666 5566 899999999998 66778885 6889999999999999987
Q ss_pred c-CccccCCCCCcEEecccCCCCCcCCc-cccCCCCCCCC
Q 017543 331 L-PSSIECLYKLLHLDLEDCKSLKSLPS-GLFLCRNKCRI 368 (369)
Q Consensus 331 L-P~~i~~L~~L~~L~Ls~n~~l~~lP~-~i~~L~~L~~L 368 (369)
+ |..++.+++|++|+|++|+ +..+|. .+..+++|+.|
T Consensus 119 ~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L 157 (220)
T 2v9t_B 119 LRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTM 157 (220)
T ss_dssp CCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEE
T ss_pred eCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEE
Confidence 7 4568889999999999988 555554 46677777654
No 21
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.25 E-value=9.4e-12 Score=127.53 Aligned_cols=109 Identities=17% Similarity=0.227 Sum_probs=88.5
Q ss_pred cccccCCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCccc-
Q 017543 254 CNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEEL- 331 (369)
Q Consensus 254 ~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~L- 331 (369)
.+.+..+|. ++.+++|+.|+|++| .+..+|..+ .|++|+.|+|++ |.+..+|.+++|++|+.|+|++|.|+.+
T Consensus 450 ~n~l~~lp~---~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp~l~~l~~L~~L~Ls~N~l~~~~ 524 (567)
T 1dce_A 450 HKDLTVLCH---LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASD-NALENVDGVANLPRLQELLLCNNRLQQSA 524 (567)
T ss_dssp TSCCSSCCC---GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCS-SCCCCCGGGTTCSSCCEEECCSSCCCSSS
T ss_pred CCCCCCCcC---ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCC-CCCCCCcccCCCCCCcEEECCCCCCCCCC
Confidence 345666663 678899999999999 588999888 899999999998 5677788888999999999999999987
Q ss_pred -CccccCCCCCcEEecccCCCCCcCCcccc----CCCCCCCC
Q 017543 332 -PSSIECLYKLLHLDLEDCKSLKSLPSGLF----LCRNKCRI 368 (369)
Q Consensus 332 -P~~i~~L~~L~~L~Ls~n~~l~~lP~~i~----~L~~L~~L 368 (369)
|..++.|++|++|+|++|+ +..+|..+. .+++|+.|
T Consensus 525 ~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 525 AIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp TTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEE
T ss_pred CcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCcc
Confidence 8889999999999999988 555555432 36677655
No 22
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.25 E-value=1.6e-12 Score=122.95 Aligned_cols=120 Identities=19% Similarity=0.238 Sum_probs=85.0
Q ss_pred hhhhhhhhcccc-cCCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEE
Q 017543 246 LKEKIISACNIF-TKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMF 322 (369)
Q Consensus 246 L~~L~ll~~~~l-~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~ 322 (369)
|+.+.+.+++.+ ..+|.. +..+++|++|+|++|...+.+|..+ .+++|++|+|++|...+.+|. ++.+++|++|+
T Consensus 78 L~~L~L~~~n~l~~~~p~~--l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 155 (313)
T 1ogq_A 78 LNFLYIGGINNLVGPIPPA--IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155 (313)
T ss_dssp CSEEEEEEETTEESCCCGG--GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CCeeeCCCCCcccccCChh--HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEE
Confidence 444444432333 344433 6778888888888884333777777 788888888888554446776 88888888888
Q ss_pred eecCCCc-ccCccccCCC-CCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543 323 LNGTAIE-ELPSSIECLY-KLLHLDLEDCKSLKSLPSGLFLCRNKCRI 368 (369)
Q Consensus 323 Ls~n~l~-~LP~~i~~L~-~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L 368 (369)
|++|.++ .+|..++.+. +|++|+|++|++.+.+|..+..+. |+.|
T Consensus 156 L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L 202 (313)
T 1ogq_A 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFV 202 (313)
T ss_dssp CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEE
T ss_pred CcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEE
Confidence 8888887 7888888887 888888888886667888877765 5544
No 23
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.25 E-value=2.4e-11 Score=113.87 Aligned_cols=109 Identities=32% Similarity=0.450 Sum_probs=87.0
Q ss_pred ccccCCCCCCCccccceeeEEeecCCCCCCCcCcc-c-cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCcc
Q 017543 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAG-I-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEE 330 (369)
Q Consensus 255 ~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~-i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~ 330 (369)
+.+..+|.. +..+++|+.|++++| .+..+|.. + .+++|++|+|++ +.+..+|. +..+++|+.|+|++|+|+.
T Consensus 87 N~l~~l~~~--~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 87 NQLQSLPLL--GQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNNLTE 162 (290)
T ss_dssp SCCSSCCCC--TTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred CcCCcCchh--hccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCC-CCCCccChhhcccccCCCEEECCCCcCCc
Confidence 445566643 567888999999988 57777754 5 789999999998 56777775 7888999999999999998
Q ss_pred cCccc-cCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543 331 LPSSI-ECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI 368 (369)
Q Consensus 331 LP~~i-~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L 368 (369)
+|..+ ..+++|++|+|++|+ +..+|..++.+.+|++|
T Consensus 163 l~~~~~~~l~~L~~L~L~~N~-l~~ip~~~~~~~~L~~l 200 (290)
T 1p9a_G 163 LPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFA 200 (290)
T ss_dssp CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEE
T ss_pred cCHHHhcCcCCCCEEECCCCc-CCccChhhcccccCCeE
Confidence 88764 778999999999888 77899888887777654
No 24
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.25 E-value=2.2e-11 Score=107.91 Aligned_cols=98 Identities=32% Similarity=0.473 Sum_probs=52.2
Q ss_pred cccceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCcccCcc-ccCCCCC
Q 017543 267 QHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPSS-IECLYKL 341 (369)
Q Consensus 267 ~~l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~LP~~-i~~L~~L 341 (369)
..+++|+.|++++| .+..+|... .+++|++|+|++ +.+..+|. ++.+++|++|+|++|.|+.+|.. ++++++|
T Consensus 49 ~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 126 (208)
T 2o6s_A 49 DELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLST-NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQL 126 (208)
T ss_dssp TTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCC-CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcC
Confidence 45555666666655 355555433 455666666665 33444543 45566666666666666555544 4555666
Q ss_pred cEEecccCCCCCcCCcc-ccCCCCCCC
Q 017543 342 LHLDLEDCKSLKSLPSG-LFLCRNKCR 367 (369)
Q Consensus 342 ~~L~Ls~n~~l~~lP~~-i~~L~~L~~ 367 (369)
++|+|++|+ +..+|.. +..+++|+.
T Consensus 127 ~~L~l~~N~-l~~~~~~~~~~l~~L~~ 152 (208)
T 2o6s_A 127 KDLRLYQNQ-LKSVPDGVFDRLTSLQY 152 (208)
T ss_dssp CEEECCSSC-CSCCCTTTTTTCTTCCE
T ss_pred CEEECCCCc-cceeCHHHhccCCCccE
Confidence 666666555 3334433 344555544
No 25
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.24 E-value=2.4e-11 Score=110.98 Aligned_cols=117 Identities=26% Similarity=0.386 Sum_probs=93.0
Q ss_pred hhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCcc-c-cccCccEEEccCCCCCCcCCC--CCCCCCCCEEE
Q 017543 247 KEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAG-I-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMF 322 (369)
Q Consensus 247 ~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~-i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~ 322 (369)
+.+.+.. +.+..++.. .+..+++|+.|+|++| .+..++.. + .+++|++|+|++ +.+..+|. ++.+++|++|+
T Consensus 38 ~~L~L~~-n~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~ 113 (251)
T 3m19_A 38 EKLDLQS-TGLATLSDA-TFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLAN-NQLASLPLGVFDHLTQLDKLY 113 (251)
T ss_dssp CEEECTT-SCCCCCCTT-TTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEE
T ss_pred CEEEccC-CCcCccCHh-HhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECCC-CcccccChhHhcccCCCCEEE
Confidence 3344433 344555432 3678999999999999 57777665 5 899999999999 56777774 89999999999
Q ss_pred eecCCCcccCcc-ccCCCCCcEEecccCCCCCcCCc-cccCCCCCCCC
Q 017543 323 LNGTAIEELPSS-IECLYKLLHLDLEDCKSLKSLPS-GLFLCRNKCRI 368 (369)
Q Consensus 323 Ls~n~l~~LP~~-i~~L~~L~~L~Ls~n~~l~~lP~-~i~~L~~L~~L 368 (369)
|++|.|+.+|.. ++.+++|++|+|++|+ +..+|. .+..+++|+.|
T Consensus 114 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L 160 (251)
T 3m19_A 114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTL 160 (251)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred cCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEE
Confidence 999999999887 5899999999999998 666666 57788888765
No 26
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.22 E-value=2.5e-11 Score=103.83 Aligned_cols=97 Identities=22% Similarity=0.212 Sum_probs=85.0
Q ss_pred cceeeEEeecCCCCCC--CcCccc-cccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcc-cCccccCCCCCcEE
Q 017543 269 LNTLVVLNLRDCKSLK--SLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEE-LPSSIECLYKLLHL 344 (369)
Q Consensus 269 l~~L~~L~L~~n~~l~--~lP~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~-LP~~i~~L~~L~~L 344 (369)
.++|+.|++++|. +. .+|..+ .+++|++|+|++| .+..++.++.+++|++|+|++|.+.. +|..++++++|++|
T Consensus 23 ~~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINV-GLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESS-CCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCC-CCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 3679999999994 66 899888 9999999999995 47777559999999999999999997 88888889999999
Q ss_pred ecccCCCCCcCC--ccccCCCCCCCC
Q 017543 345 DLEDCKSLKSLP--SGLFLCRNKCRI 368 (369)
Q Consensus 345 ~Ls~n~~l~~lP--~~i~~L~~L~~L 368 (369)
+|++|+ +..+| ..+..+++|+.|
T Consensus 101 ~Ls~N~-l~~~~~~~~l~~l~~L~~L 125 (168)
T 2ell_A 101 NLSGNK-LKDISTLEPLKKLECLKSL 125 (168)
T ss_dssp ECBSSS-CCSSGGGGGGSSCSCCCEE
T ss_pred eccCCc-cCcchhHHHHhcCCCCCEE
Confidence 999998 77777 788888888876
No 27
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.22 E-value=1.1e-11 Score=107.11 Aligned_cols=107 Identities=15% Similarity=0.199 Sum_probs=86.3
Q ss_pred ccccCCCCCCCccccc-eeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCcc
Q 017543 255 NIFTKTPNPSFSQHLN-TLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEE 330 (369)
Q Consensus 255 ~~l~~~p~~~~~~~l~-~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~ 330 (369)
+.+..++. +..+. +|+.|++++| .+..+ ..+ .+++|++|+|++ +.+..+|. ++.+++|++|+|++|.|..
T Consensus 29 n~l~~i~~---~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~i~~ 102 (176)
T 1a9n_A 29 YKIPVIEN---LGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNN-NRICRIGEGLDQALPDLTELILTNNSLVE 102 (176)
T ss_dssp SCCCSCCC---GGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCS-SCCCEECSCHHHHCTTCCEEECCSCCCCC
T ss_pred CCCchhHH---hhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCC-CcccccCcchhhcCCCCCEEECCCCcCCc
Confidence 34555542 33444 8999999999 57777 456 899999999998 56778885 5889999999999999999
Q ss_pred cCc--cccCCCCCcEEecccCCCCCcCCcc----ccCCCCCCCC
Q 017543 331 LPS--SIECLYKLLHLDLEDCKSLKSLPSG----LFLCRNKCRI 368 (369)
Q Consensus 331 LP~--~i~~L~~L~~L~Ls~n~~l~~lP~~----i~~L~~L~~L 368 (369)
+|. .++.+++|++|++++|+ +..+|.. +..+++|+.|
T Consensus 103 ~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~L 145 (176)
T 1a9n_A 103 LGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVL 145 (176)
T ss_dssp GGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEE
T ss_pred chhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCcccee
Confidence 987 78999999999999998 6788885 7888888765
No 28
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.21 E-value=2.5e-11 Score=104.93 Aligned_cols=99 Identities=15% Similarity=0.179 Sum_probs=85.9
Q ss_pred cccceeeEEeecCCCCCCCcCcccccc-CccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccCccc-cCCCCCcEE
Q 017543 267 QHLNTLVVLNLRDCKSLKSLPAGIHLE-FLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSI-ECLYKLLHL 344 (369)
Q Consensus 267 ~~l~~L~~L~L~~n~~l~~lP~~i~L~-~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP~~i-~~L~~L~~L 344 (369)
..+.+|+.|++++| .+..+|....+. +|++|+|++ +.+..++.++.+++|++|+|++|.|+.+|..+ +.+++|++|
T Consensus 16 ~~~~~L~~L~l~~n-~l~~i~~~~~~~~~L~~L~Ls~-N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 16 TNAVRDRELDLRGY-KIPVIENLGATLDQFDAIDFSD-NEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp ECTTSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCS-SCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CCcCCceEEEeeCC-CCchhHHhhhcCCCCCEEECCC-CCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 45778999999999 588887544555 999999999 56777866999999999999999999999776 999999999
Q ss_pred ecccCCCCCcCCc--cccCCCCCCCC
Q 017543 345 DLEDCKSLKSLPS--GLFLCRNKCRI 368 (369)
Q Consensus 345 ~Ls~n~~l~~lP~--~i~~L~~L~~L 368 (369)
+|++|+ ++.+|. .+..+++|+.|
T Consensus 94 ~L~~N~-i~~~~~~~~l~~l~~L~~L 118 (176)
T 1a9n_A 94 ILTNNS-LVELGDLDPLASLKSLTYL 118 (176)
T ss_dssp ECCSCC-CCCGGGGGGGGGCTTCCEE
T ss_pred ECCCCc-CCcchhhHhhhcCCCCCEE
Confidence 999998 788998 78888888765
No 29
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.21 E-value=1.9e-11 Score=102.45 Aligned_cols=98 Identities=19% Similarity=0.199 Sum_probs=85.4
Q ss_pred ccceeeEEeecCCCCCC--CcCccc-cccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcc-cCccccCCCCCcE
Q 017543 268 HLNTLVVLNLRDCKSLK--SLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEE-LPSSIECLYKLLH 343 (369)
Q Consensus 268 ~l~~L~~L~L~~n~~l~--~lP~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~-LP~~i~~L~~L~~ 343 (369)
..++|+.|++++|. +. .+|..+ .+++|++|++++| .+..++.++.+++|++|+|++|.|.. +|..++.+++|++
T Consensus 15 ~~~~l~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSR-SNEGKLEGLTDEFEELEFLSTINV-GLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCB-CBTTBCCSCCTTCTTCCEEECTTS-CCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCc-CChhHHHHHHhhcCCCcEEECcCC-CCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 34789999999994 66 899888 8999999999995 67777559999999999999999997 8888888999999
Q ss_pred EecccCCCCCcCC--ccccCCCCCCCC
Q 017543 344 LDLEDCKSLKSLP--SGLFLCRNKCRI 368 (369)
Q Consensus 344 L~Ls~n~~l~~lP--~~i~~L~~L~~L 368 (369)
|++++|+ +..+| ..+..+++|+.|
T Consensus 93 L~ls~N~-i~~~~~~~~~~~l~~L~~L 118 (149)
T 2je0_A 93 LNLSGNK-IKDLSTIEPLKKLENLKSL 118 (149)
T ss_dssp EECTTSC-CCSHHHHGGGGGCTTCCEE
T ss_pred EECCCCc-CCChHHHHHHhhCCCCCEE
Confidence 9999999 66655 888999988876
No 30
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.20 E-value=7.2e-11 Score=101.91 Aligned_cols=85 Identities=27% Similarity=0.404 Sum_probs=44.7
Q ss_pred cccceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCcccCccc-cCCCCC
Q 017543 267 QHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPSSI-ECLYKL 341 (369)
Q Consensus 267 ~~l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~LP~~i-~~L~~L 341 (369)
..+++|+.|++++| .+..+|... .+++|++|+|++ +.+..+|. ++.+++|++|+|++|.|+.+|..+ ..+++|
T Consensus 49 ~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 126 (177)
T 2o6r_A 49 DKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHE-NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSL 126 (177)
T ss_dssp TTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred cCcccccEEECCCC-cceEeChhHccCCCccCEEECCC-CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCccc
Confidence 44555555555555 344554432 455555555555 33444443 455555555555555555555543 455555
Q ss_pred cEEecccCCCCC
Q 017543 342 LHLDLEDCKSLK 353 (369)
Q Consensus 342 ~~L~Ls~n~~l~ 353 (369)
++|+|++|++.+
T Consensus 127 ~~L~l~~N~~~~ 138 (177)
T 2o6r_A 127 QKIWLHTNPWDC 138 (177)
T ss_dssp CEEECCSSCBCC
T ss_pred CEEEecCCCeec
Confidence 555555555433
No 31
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.20 E-value=2e-11 Score=124.83 Aligned_cols=93 Identities=28% Similarity=0.332 Sum_probs=47.5
Q ss_pred cccceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCc--ccCccccCCCC
Q 017543 267 QHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIE--ELPSSIECLYK 340 (369)
Q Consensus 267 ~~l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~--~LP~~i~~L~~ 340 (369)
..+++|++|+|++| .+..+|... +|++|++|+|++ +.+..+|. +++|++|++|+|++|.++ .+|..++.|++
T Consensus 97 ~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L~Ls~-N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 174 (635)
T 4g8a_A 97 QSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVE-TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 174 (635)
T ss_dssp TTCTTCCEEECTTC-CCCEECGGGGTTCTTCCEEECTT-SCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTT
T ss_pred cCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCEEECCC-CcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchh
Confidence 44555555555555 355555432 455555555555 33444443 555555555555555554 23445555555
Q ss_pred CcEEecccCCCCCcCCccccC
Q 017543 341 LLHLDLEDCKSLKSLPSGLFL 361 (369)
Q Consensus 341 L~~L~Ls~n~~l~~lP~~i~~ 361 (369)
|++|++++|++.+..|..+..
T Consensus 175 L~~L~L~~N~l~~~~~~~l~~ 195 (635)
T 4g8a_A 175 LEHLDLSSNKIQSIYCTDLRV 195 (635)
T ss_dssp CCEEECCSSCCCEECGGGGHH
T ss_pred hhhhcccCccccccccccccc
Confidence 555555555533333334433
No 32
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.20 E-value=9.8e-12 Score=131.60 Aligned_cols=76 Identities=22% Similarity=0.168 Sum_probs=51.9
Q ss_pred cCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCc-ccCccccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543 293 EFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIE-ELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI 368 (369)
Q Consensus 293 ~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~-~LP~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L 368 (369)
++|++|+|++|...+.+|. +++|++|+.|+|++|.++ .+|.++++|++|++|||++|++.+.+|..+..|+.|+.|
T Consensus 632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 709 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709 (768)
T ss_dssp BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEE
T ss_pred ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEE
Confidence 4566666666555556665 777777777777777776 677777777777777777777666777777777666654
No 33
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.20 E-value=5.3e-11 Score=106.88 Aligned_cols=108 Identities=25% Similarity=0.349 Sum_probs=89.0
Q ss_pred ccccCCCCCCCccccceeeEEeecCCCCCCCcCc-cc-cccCccEEEccCCCCCCcC-CC-CCCCCCCCEEEeecCCCcc
Q 017543 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPA-GI-HLEFLKELDLSGCSKLKRL-PD-ISSAANIEEMFLNGTAIEE 330 (369)
Q Consensus 255 ~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~-~i-~L~~L~~L~Ls~~~~l~~l-P~-i~~L~~L~~L~Ls~n~l~~ 330 (369)
+.+..+|.. + ..+|+.|+|++| .+..+|. .+ .+++|++|+|++ +.+..+ |. +.++++|++|+|++|.|+.
T Consensus 21 ~~l~~iP~~--l--~~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~-N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 94 (220)
T 2v9t_B 21 KGLTEIPTN--L--PETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSN-NQISELAPDAFQGLRSLNSLVLYGNKITE 94 (220)
T ss_dssp SCCSSCCSS--C--CTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCS-SCCCEECTTTTTTCSSCCEEECCSSCCCC
T ss_pred CCcCcCCCc--c--CcCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCC-CcCCCcCHHHhhCCcCCCEEECCCCcCCc
Confidence 345666643 2 268999999999 5888887 45 899999999999 456666 55 9999999999999999999
Q ss_pred cCcc-ccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543 331 LPSS-IECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI 368 (369)
Q Consensus 331 LP~~-i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L 368 (369)
+|.. ++.+++|++|+|++|++.+..|..+..+++|+.|
T Consensus 95 l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 133 (220)
T 2v9t_B 95 LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLL 133 (220)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEE
Confidence 9987 5899999999999999555557778888888765
No 34
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.20 E-value=7.6e-12 Score=131.83 Aligned_cols=102 Identities=26% Similarity=0.296 Sum_probs=89.1
Q ss_pred ccccCCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCcccC
Q 017543 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELP 332 (369)
Q Consensus 255 ~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~~LP 332 (369)
+.+..+|.. +..+++|+.|+|++| .+..+|..+ .|++|++|+|++ |.+..+|. |++|++|++|+|++|.|+.||
T Consensus 234 n~l~~l~~~--~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp 309 (727)
T 4b8c_D 234 LQIFNISAN--IFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSH-NRLTSLPAELGSCFQLKYFYFFDNMVTTLP 309 (727)
T ss_dssp SCCSCCCGG--GGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTT-SCCSSCCSSGGGGTTCSEEECCSSCCCCCC
T ss_pred CCCCCCChh--hcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcC-CcCCccChhhcCCCCCCEEECCCCCCCccC
Confidence 445566654 558999999999999 588999999 999999999999 55779997 999999999999999999999
Q ss_pred ccccCCCCCcEEecccCCCCCcCCcccc
Q 017543 333 SSIECLYKLLHLDLEDCKSLKSLPSGLF 360 (369)
Q Consensus 333 ~~i~~L~~L~~L~Ls~n~~l~~lP~~i~ 360 (369)
.+|++|++|++|+|++|++.+.+|..+.
T Consensus 310 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 337 (727)
T 4b8c_D 310 WEFGNLCNLQFLGVEGNPLEKQFLKILT 337 (727)
T ss_dssp SSTTSCTTCCCEECTTSCCCSHHHHHHH
T ss_pred hhhhcCCCccEEeCCCCccCCCChHHHh
Confidence 9999999999999999997777776654
No 35
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.20 E-value=5.1e-11 Score=103.24 Aligned_cols=99 Identities=18% Similarity=0.251 Sum_probs=80.9
Q ss_pred cccccCCCCCCCccccceeeEEeecCCCCCCCcC-ccc-cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCc
Q 017543 254 CNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLP-AGI-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIE 329 (369)
Q Consensus 254 ~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP-~~i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~ 329 (369)
.+.+..+|.. + ..+|+.|+|++| .+..++ ..+ .+++|++|+|++ |.+..+|. ++++++|++|+|++|.|+
T Consensus 21 ~n~l~~iP~~--~--~~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L~~N~l~ 94 (174)
T 2r9u_A 21 NIRLASVPAG--I--PTDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNS-NKLTAIPTGVFDKLTQLTQLDLNDNHLK 94 (174)
T ss_dssp SSCCSSCCSC--C--CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCCccCCC--c--CCCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCC-CCCCccChhHhCCcchhhEEECCCCccc
Confidence 3456667653 2 378999999999 577774 456 899999999999 67888886 689999999999999999
Q ss_pred ccCcc-ccCCCCCcEEecccCCCCCcCCccc
Q 017543 330 ELPSS-IECLYKLLHLDLEDCKSLKSLPSGL 359 (369)
Q Consensus 330 ~LP~~-i~~L~~L~~L~Ls~n~~l~~lP~~i 359 (369)
.+|.. ++.|++|++|+|++|+ +...|..+
T Consensus 95 ~l~~~~~~~l~~L~~L~L~~N~-~~c~~~~~ 124 (174)
T 2r9u_A 95 SIPRGAFDNLKSLTHIYLYNNP-WDCECRDI 124 (174)
T ss_dssp CCCTTTTTTCTTCSEEECCSSC-BCTTBGGG
T ss_pred eeCHHHhccccCCCEEEeCCCC-cccccccH
Confidence 99986 8999999999999998 55555543
No 36
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.19 E-value=6.1e-11 Score=109.68 Aligned_cols=119 Identities=26% Similarity=0.307 Sum_probs=83.0
Q ss_pred hhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCcc-c-cccCccEEEccCCCCCCcCCC--CCCCCCCCEE
Q 017543 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAG-I-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEM 321 (369)
Q Consensus 246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~-i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L 321 (369)
|+.+.... +.+..++. ..+..+++|+.|++++| .+..+|.. + .+++|++|+|++| .+..+|. ++.+++|++|
T Consensus 87 L~~L~L~~-n~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 162 (272)
T 3rfs_A 87 LTYLILTG-NQLQSLPN-GVFDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTEL 162 (272)
T ss_dssp CCEEECTT-SCCCCCCT-TTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCEEECCC-CccCccCh-hHhcCCcCCCEEECCCC-cCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEE
Confidence 33343433 34455543 23567888888888888 46676665 3 7888888888884 5667764 6788888888
Q ss_pred EeecCCCcccCcc-ccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543 322 FLNGTAIEELPSS-IECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI 368 (369)
Q Consensus 322 ~Ls~n~l~~LP~~-i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L 368 (369)
+|++|.++.+|.. ++.+++|++|+|++|++.+..|..+..+++|+.|
T Consensus 163 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 210 (272)
T 3rfs_A 163 DLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 210 (272)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred ECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEE
Confidence 8888888877665 5788888888888888444444446677777654
No 37
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.18 E-value=4.4e-11 Score=105.26 Aligned_cols=99 Identities=15% Similarity=0.166 Sum_probs=50.5
Q ss_pred ccccceeeEEeecCCCCCC-CcCccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCC-CcccCccccCCCCC
Q 017543 266 SQHLNTLVVLNLRDCKSLK-SLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTA-IEELPSSIECLYKL 341 (369)
Q Consensus 266 ~~~l~~L~~L~L~~n~~l~-~lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~-l~~LP~~i~~L~~L 341 (369)
+..+++|+.|++++|. +. ..|..+ .+++|++|+|++|......|. ++.+++|++|+|++|. +..+| .++.+++|
T Consensus 84 l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L 161 (197)
T 4ezg_A 84 ISGLSNLERLRIMGKD-VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPEL 161 (197)
T ss_dssp GTTCTTCCEEEEECTT-CBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSC
T ss_pred hhcCCCCCEEEeECCc-cCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCC
Confidence 3445555555555553 33 244444 555555555555332222333 5555555555555554 55554 35555555
Q ss_pred cEEecccCCCCCcCCccccCCCCCCCC
Q 017543 342 LHLDLEDCKSLKSLPSGLFLCRNKCRI 368 (369)
Q Consensus 342 ~~L~Ls~n~~l~~lP~~i~~L~~L~~L 368 (369)
++|++++|+ +..+| .+..+++|++|
T Consensus 162 ~~L~l~~n~-i~~~~-~l~~l~~L~~L 186 (197)
T 4ezg_A 162 KSLNIQFDG-VHDYR-GIEDFPKLNQL 186 (197)
T ss_dssp CEEECTTBC-CCCCT-TGGGCSSCCEE
T ss_pred CEEECCCCC-CcChH-HhccCCCCCEE
Confidence 555555555 44444 45555555443
No 38
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.18 E-value=3.3e-11 Score=123.48 Aligned_cols=94 Identities=24% Similarity=0.329 Sum_probs=85.0
Q ss_pred eeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCcccCccccCCCCCcEEeccc
Q 017543 271 TLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLED 348 (369)
Q Consensus 271 ~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L~Ls~ 348 (369)
.|+.|+|++| .+..+|. + .+++|+.|+|++ |.+..+|. +++|++|+.|+|++|.|+.+| .+++|++|++|+|++
T Consensus 442 ~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSH-NRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTS-CCSSCCC-GGGGTTCCEEECCS-SCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS
T ss_pred CceEEEecCC-CCCCCcC-ccccccCcEeecCc-ccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC
Confidence 4889999999 6888997 8 999999999999 56779997 999999999999999999999 899999999999999
Q ss_pred CCCCCcC-CccccCCCCCCCC
Q 017543 349 CKSLKSL-PSGLFLCRNKCRI 368 (369)
Q Consensus 349 n~~l~~l-P~~i~~L~~L~~L 368 (369)
|++.+.. |..+..|++|+.|
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L 538 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLL 538 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEE
T ss_pred CCCCCCCCcHHHhcCCCCCEE
Confidence 9944443 9999999999876
No 39
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.18 E-value=4.5e-11 Score=115.26 Aligned_cols=88 Identities=27% Similarity=0.391 Sum_probs=46.4
Q ss_pred ccccceeeEEeecCCCCCCCcCcc-c-cccCccEEEccCCCCCCcCC-C-CCCCCCCCEEEeecCCCcccCccc----cC
Q 017543 266 SQHLNTLVVLNLRDCKSLKSLPAG-I-HLEFLKELDLSGCSKLKRLP-D-ISSAANIEEMFLNGTAIEELPSSI----EC 337 (369)
Q Consensus 266 ~~~l~~L~~L~L~~n~~l~~lP~~-i-~L~~L~~L~Ls~~~~l~~lP-~-i~~L~~L~~L~Ls~n~l~~LP~~i----~~ 337 (369)
+..+++|+.|+|++| .+..+|.. + .+.+|++|+|++ +.+..++ . +..|++|+.|+|++|.|+.+|..+ +.
T Consensus 84 ~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~ 161 (361)
T 2xot_A 84 FVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLLYN-NHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNK 161 (361)
T ss_dssp TTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----
T ss_pred ccCCCCCCEEECCCC-cCCcCCHHHhCCCcCCCEEECCC-CcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCccc
Confidence 345555666666555 35555443 2 555666666665 3344432 3 555566666666666665555543 34
Q ss_pred CCCCcEEecccCCCCCcCC
Q 017543 338 LYKLLHLDLEDCKSLKSLP 356 (369)
Q Consensus 338 L~~L~~L~Ls~n~~l~~lP 356 (369)
+++|++|+|++|+ +..+|
T Consensus 162 l~~L~~L~L~~N~-l~~l~ 179 (361)
T 2xot_A 162 LPKLMLLDLSSNK-LKKLP 179 (361)
T ss_dssp CTTCCEEECCSSC-CCCCC
T ss_pred CCcCCEEECCCCC-CCccC
Confidence 5556666666555 44444
No 40
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.18 E-value=6.8e-11 Score=109.17 Aligned_cols=118 Identities=26% Similarity=0.370 Sum_probs=89.8
Q ss_pred hhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCC--CCCCCCCCEE
Q 017543 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEM 321 (369)
Q Consensus 246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L 321 (369)
|+.+.+.. +.+..++.. .+..+++|+.|++++| .+..+|... .+++|++|+|++ +.+..+|. ++.+++|++|
T Consensus 63 L~~L~l~~-n~l~~i~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L 138 (270)
T 2o6q_A 63 LRLLYLND-NKLQTLPAG-IFKELKNLETLWVTDN-KLQALPIGVFDQLVNLAELRLDR-NQLKSLPPRVFDSLTKLTYL 138 (270)
T ss_dssp CCEEECCS-SCCSCCCTT-TTSSCTTCCEEECCSS-CCCCCCTTTTTTCSSCCEEECCS-SCCCCCCTTTTTTCTTCCEE
T ss_pred CCEEECCC-CccCeeChh-hhcCCCCCCEEECCCC-cCCcCCHhHcccccCCCEEECCC-CccCeeCHHHhCcCcCCCEE
Confidence 34343433 445566543 3467889999999998 577877655 789999999998 55667764 7899999999
Q ss_pred EeecCCCcccCcc-ccCCCCCcEEecccCCCCCcCCc-cccCCCCCCCC
Q 017543 322 FLNGTAIEELPSS-IECLYKLLHLDLEDCKSLKSLPS-GLFLCRNKCRI 368 (369)
Q Consensus 322 ~Ls~n~l~~LP~~-i~~L~~L~~L~Ls~n~~l~~lP~-~i~~L~~L~~L 368 (369)
+|++|.|+.+|.. ++.+++|++|+|++|. +..+|. .+..+++|+.|
T Consensus 139 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 186 (270)
T 2o6q_A 139 SLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKTL 186 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEE
T ss_pred ECCCCcCCccCHhHccCCcccceeEecCCc-CcEeChhHhccCCCcCEE
Confidence 9999999988876 6889999999999988 556665 46777887765
No 41
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.17 E-value=8.6e-11 Score=101.78 Aligned_cols=92 Identities=27% Similarity=0.501 Sum_probs=79.8
Q ss_pred eEEeecCCCCCCCcCccccccCccEEEccCCCCCCcCC-C-CCCCCCCCEEEeecCCCcccCccc-cCCCCCcEEecccC
Q 017543 273 VVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLP-D-ISSAANIEEMFLNGTAIEELPSSI-ECLYKLLHLDLEDC 349 (369)
Q Consensus 273 ~~L~L~~n~~l~~lP~~i~L~~L~~L~Ls~~~~l~~lP-~-i~~L~~L~~L~Ls~n~l~~LP~~i-~~L~~L~~L~Ls~n 349 (369)
+.+++++| .++.+|..+. .+|++|+|++ +.+..+| . ++++++|++|+|++|+|+.+|..+ ++|++|++|+|++|
T Consensus 15 ~~l~~~~n-~l~~iP~~~~-~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNI-RLASVPAGIP-TDKQRLWLNN-NQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSS-CCSSCCSCCC-TTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCC-CCCccCCCcC-CCCcEEEeCC-CCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 67899998 6899998774 7899999999 5577775 5 999999999999999999999874 89999999999999
Q ss_pred CCCCcCCcc-ccCCCCCCCC
Q 017543 350 KSLKSLPSG-LFLCRNKCRI 368 (369)
Q Consensus 350 ~~l~~lP~~-i~~L~~L~~L 368 (369)
+ +..+|.. +..+++|+.|
T Consensus 92 ~-l~~l~~~~~~~l~~L~~L 110 (174)
T 2r9u_A 92 H-LKSIPRGAFDNLKSLTHI 110 (174)
T ss_dssp C-CCCCCTTTTTTCTTCSEE
T ss_pred c-cceeCHHHhccccCCCEE
Confidence 8 6778876 7788888875
No 42
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.16 E-value=1.4e-10 Score=107.08 Aligned_cols=118 Identities=25% Similarity=0.376 Sum_probs=93.3
Q ss_pred hhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCC--CCCCCCCCEE
Q 017543 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEM 321 (369)
Q Consensus 246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L 321 (369)
|+.+.+.. +.+..++. ..+..+++|+.|++++| .+..+|... .+++|++|+|++ +.+..+|. ++.+++|++|
T Consensus 87 L~~L~l~~-n~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L 162 (270)
T 2o6q_A 87 LETLWVTD-NKLQALPI-GVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGY-NELQSLPKGVFDKLTSLKEL 162 (270)
T ss_dssp CCEEECCS-SCCCCCCT-TTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEE
T ss_pred CCEEECCC-CcCCcCCH-hHcccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCC-CcCCccCHhHccCCccccee
Confidence 33333333 44556654 33578899999999999 577777654 899999999999 56788885 8999999999
Q ss_pred EeecCCCcccCcc-ccCCCCCcEEecccCCCCCcCCcc-ccCCCCCCCC
Q 017543 322 FLNGTAIEELPSS-IECLYKLLHLDLEDCKSLKSLPSG-LFLCRNKCRI 368 (369)
Q Consensus 322 ~Ls~n~l~~LP~~-i~~L~~L~~L~Ls~n~~l~~lP~~-i~~L~~L~~L 368 (369)
+|++|.|+.+|.. +.++++|++|+|++|+ +..+|.. +..+++|+.|
T Consensus 163 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L 210 (270)
T 2o6q_A 163 RLYNNQLKRVPEGAFDKLTELKTLKLDNNQ-LKRVPEGAFDSLEKLKML 210 (270)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEE
T ss_pred EecCCcCcEeChhHhccCCCcCEEECCCCc-CCcCCHHHhccccCCCEE
Confidence 9999999988875 7899999999999998 6677765 6667887765
No 43
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.16 E-value=1e-10 Score=105.07 Aligned_cols=108 Identities=18% Similarity=0.254 Sum_probs=88.5
Q ss_pred ccccCCCCCCCccccceeeEEeecCCCCCCCcCc-c-c-cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCc
Q 017543 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPA-G-I-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIE 329 (369)
Q Consensus 255 ~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~-~-i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~ 329 (369)
+.++.+|.. + ...++.|+|++| .+..++. . + .+++|++|+|++ +.+..+|. ++++++|++|+|++|.|+
T Consensus 21 n~l~~iP~~--~--~~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~-N~i~~i~~~~~~~l~~L~~L~Ls~N~l~ 94 (220)
T 2v70_A 21 QKLNKIPEH--I--PQYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSN-NKITDIEEGAFEGASGVNEILLTSNRLE 94 (220)
T ss_dssp SCCSSCCSC--C--CTTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCcccCccC--C--CCCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCC-CcCCEECHHHhCCCCCCCEEECCCCccC
Confidence 455666643 2 345789999999 5887743 3 5 899999999999 56777774 999999999999999999
Q ss_pred ccCcc-ccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543 330 ELPSS-IECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI 368 (369)
Q Consensus 330 ~LP~~-i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L 368 (369)
.+|.. ++.+++|++|+|++|++.+..|..+..+++|+.|
T Consensus 95 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 134 (220)
T 2v70_A 95 NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLL 134 (220)
T ss_dssp CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEE
T ss_pred ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEE
Confidence 88775 8999999999999999666668888888888875
No 44
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.16 E-value=7.5e-11 Score=109.47 Aligned_cols=100 Identities=25% Similarity=0.400 Sum_probs=73.4
Q ss_pred ccccceeeEEeecCCCCCCCcCcc-c-cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCccc-CccccCCCC
Q 017543 266 SQHLNTLVVLNLRDCKSLKSLPAG-I-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEEL-PSSIECLYK 340 (369)
Q Consensus 266 ~~~l~~L~~L~L~~n~~l~~lP~~-i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~L-P~~i~~L~~ 340 (369)
+..+++|+.|++++| .+..+|.. + .+++|++|+|++ +.+..+|. +..+++|++|+|++|.+..+ |..++++++
T Consensus 125 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 202 (285)
T 1ozn_A 125 FRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202 (285)
T ss_dssp TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred hhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCC-CcccccCHHHhcCccccCEEECCCCcccccCHhHccCccc
Confidence 566778888888888 46666655 4 688888888887 45666664 77888888888888888755 677788888
Q ss_pred CcEEecccCCCCCcCC-ccccCCCCCCCC
Q 017543 341 LLHLDLEDCKSLKSLP-SGLFLCRNKCRI 368 (369)
Q Consensus 341 L~~L~Ls~n~~l~~lP-~~i~~L~~L~~L 368 (369)
|++|+|++|+ +..+| ..+..+++|+.|
T Consensus 203 L~~L~l~~n~-l~~~~~~~~~~l~~L~~L 230 (285)
T 1ozn_A 203 LMTLYLFANN-LSALPTEALAPLRALQYL 230 (285)
T ss_dssp CCEEECCSSC-CSCCCHHHHTTCTTCCEE
T ss_pred ccEeeCCCCc-CCcCCHHHcccCcccCEE
Confidence 8888888887 44455 346677777654
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.16 E-value=9.3e-12 Score=117.77 Aligned_cols=120 Identities=21% Similarity=0.231 Sum_probs=97.0
Q ss_pred hhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC-CCCCC-CCCEEE
Q 017543 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAA-NIEEMF 322 (369)
Q Consensus 246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~-~L~~L~ 322 (369)
|+.+....+.....+|.. +..+++|++|++++|...+.+|..+ .+++|++|+|++|...+.+|. ++.+. +|++|+
T Consensus 103 L~~L~Ls~n~l~~~~p~~--~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~ 180 (313)
T 1ogq_A 103 LHYLYITHTNVSGAIPDF--LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT 180 (313)
T ss_dssp CSEEEEEEECCEEECCGG--GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEE
T ss_pred CCEEECcCCeeCCcCCHH--HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEE
Confidence 444444444433355543 7789999999999995444788888 899999999999655558897 88888 999999
Q ss_pred eecCCCc-ccCccccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543 323 LNGTAIE-ELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI 368 (369)
Q Consensus 323 Ls~n~l~-~LP~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L 368 (369)
|++|.+. .+|..++.++ |++|+|++|++.+.+|..+..+++|+.|
T Consensus 181 L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 226 (313)
T 1ogq_A 181 ISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKI 226 (313)
T ss_dssp CCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEE
T ss_pred CcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEE
Confidence 9999998 8899999998 9999999999777888889989888876
No 46
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.16 E-value=3.5e-11 Score=105.93 Aligned_cols=108 Identities=14% Similarity=0.101 Sum_probs=88.9
Q ss_pred ccccCCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCc-cc
Q 017543 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIE-EL 331 (369)
Q Consensus 255 ~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~-~L 331 (369)
+.+..++ . +..+++|+.|++++| .+..++ .+ .+++|++|++++|......|. ++.|++|++|+|++|.+. ..
T Consensus 54 n~i~~l~-~--l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~ 128 (197)
T 4ezg_A 54 INVTDLT-G--IEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSI 128 (197)
T ss_dssp SCCSCCT-T--GGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGG
T ss_pred CCccChH-H--HhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHh
Confidence 4455655 2 678899999999999 566665 56 899999999999554444565 999999999999999998 47
Q ss_pred CccccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543 332 PSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI 368 (369)
Q Consensus 332 P~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L 368 (369)
|..++.+++|++|+|++|+.++.+| .+..+++|+.|
T Consensus 129 ~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L 164 (197)
T 4ezg_A 129 LTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSL 164 (197)
T ss_dssp HHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEE
T ss_pred HHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEE
Confidence 8889999999999999998788888 68888888765
No 47
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.15 E-value=3.5e-11 Score=127.39 Aligned_cols=103 Identities=22% Similarity=0.238 Sum_probs=61.9
Q ss_pred ccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCc-ccCccccCCCCCc
Q 017543 266 SQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIE-ELPSSIECLYKLL 342 (369)
Q Consensus 266 ~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~-~LP~~i~~L~~L~ 342 (369)
+..+++|+.|++++|...+.+|..+ .+++|++|+|++|...+.+|. ++++++|++|+|++|.+. .+|.+++.+++|+
T Consensus 438 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 517 (768)
T 3rgz_A 438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 517 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred HhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCC
Confidence 4455566666666664333555555 566666666666544445554 666666666666666665 5666666666666
Q ss_pred EEecccCCCCCcCCccccCCCCCCCC
Q 017543 343 HLDLEDCKSLKSLPSGLFLCRNKCRI 368 (369)
Q Consensus 343 ~L~Ls~n~~l~~lP~~i~~L~~L~~L 368 (369)
+|+|++|++.+.+|..+..+++|+.|
T Consensus 518 ~L~L~~N~l~~~~p~~l~~l~~L~~L 543 (768)
T 3rgz_A 518 ILKLSNNSFSGNIPAELGDCRSLIWL 543 (768)
T ss_dssp EEECCSSCCEEECCGGGGGCTTCCEE
T ss_pred EEECCCCcccCcCCHHHcCCCCCCEE
Confidence 66666666555666666666665543
No 48
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.14 E-value=1.1e-10 Score=109.34 Aligned_cols=116 Identities=29% Similarity=0.383 Sum_probs=94.4
Q ss_pred hhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCC-C-CCCCCCCCEEE
Q 017543 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLP-D-ISSAANIEEMF 322 (369)
Q Consensus 246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP-~-i~~L~~L~~L~ 322 (369)
|+.+.+.. +.+..++. ...+++|+.|++++| .+..+|..+ .+++|++|+|++ +.+..+| . +..+++|++|+
T Consensus 57 L~~L~L~~-n~l~~~~~---~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~l~~L~~L~ 130 (290)
T 1p9a_G 57 LTQLNLDR-AELTKLQV---DGTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSF-NRLTSLPLGALRGLGELQELY 130 (290)
T ss_dssp CCEEECTT-SCCCEEEC---CSCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCS-SCCCCCCSSTTTTCTTCCEEE
T ss_pred CCEEECCC-CccCcccC---CCCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECCC-CcCcccCHHHHcCCCCCCEEE
Confidence 33333333 44555543 257899999999999 689999988 899999999999 6678887 4 99999999999
Q ss_pred eecCCCcccCcc-ccCCCCCcEEecccCCCCCcCCccc-cCCCCCCCC
Q 017543 323 LNGTAIEELPSS-IECLYKLLHLDLEDCKSLKSLPSGL-FLCRNKCRI 368 (369)
Q Consensus 323 Ls~n~l~~LP~~-i~~L~~L~~L~Ls~n~~l~~lP~~i-~~L~~L~~L 368 (369)
|++|.|+.+|.. +..+++|++|+|++|+ +..+|.++ ..+++|+.|
T Consensus 131 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L 177 (290)
T 1p9a_G 131 LKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTL 177 (290)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEE
T ss_pred CCCCCCCccChhhcccccCCCEEECCCCc-CCccCHHHhcCcCCCCEE
Confidence 999999999876 5899999999999998 77888765 568887765
No 49
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.14 E-value=1.4e-10 Score=99.92 Aligned_cols=94 Identities=23% Similarity=0.300 Sum_probs=77.7
Q ss_pred cccccCCCCCCCccccceeeEEeecCCCCCCCcC-ccc-cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCc
Q 017543 254 CNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLP-AGI-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIE 329 (369)
Q Consensus 254 ~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP-~~i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~ 329 (369)
.+.+..+|.. + ..+|+.|+|++| .+..++ ..+ .+++|++|+|++ |.+..+|. +..+++|++|+|++|.|+
T Consensus 18 ~n~l~~ip~~--~--~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~N~l~ 91 (170)
T 3g39_A 18 GKSLASVPTG--I--PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDN-NQLTVLPAGVFDKLTQLTQLSLNDNQLK 91 (170)
T ss_dssp TSCCSSCCSC--C--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCcCccCcc--C--CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCC-CCcCccChhhccCCCCCCEEECCCCccC
Confidence 3556777753 2 478999999999 577774 456 899999999998 56888885 789999999999999999
Q ss_pred ccCcc-ccCCCCCcEEecccCCCCC
Q 017543 330 ELPSS-IECLYKLLHLDLEDCKSLK 353 (369)
Q Consensus 330 ~LP~~-i~~L~~L~~L~Ls~n~~l~ 353 (369)
.+|.. +++|++|++|+|++|++..
T Consensus 92 ~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 92 SIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred EeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 99875 8999999999999998443
No 50
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.14 E-value=2.2e-10 Score=101.40 Aligned_cols=97 Identities=31% Similarity=0.469 Sum_probs=83.2
Q ss_pred cceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCcccCcc-ccCCCCCcE
Q 017543 269 LNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPSS-IECLYKLLH 343 (369)
Q Consensus 269 l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~LP~~-i~~L~~L~~ 343 (369)
..+|+.|++++| .+..+|... .+++|++|+|++ +.+..+|. +..+++|++|+|++|.|+.+|.. ++.+++|++
T Consensus 27 ~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 104 (208)
T 2o6s_A 27 PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGG-NKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKE 104 (208)
T ss_dssp CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCC-CccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCE
Confidence 568999999999 578888764 899999999999 56778885 78999999999999999998876 689999999
Q ss_pred EecccCCCCCcCCcc-ccCCCCCCCC
Q 017543 344 LDLEDCKSLKSLPSG-LFLCRNKCRI 368 (369)
Q Consensus 344 L~Ls~n~~l~~lP~~-i~~L~~L~~L 368 (369)
|+|++|+ +..+|.. +..+++|+.|
T Consensus 105 L~L~~N~-l~~~~~~~~~~l~~L~~L 129 (208)
T 2o6s_A 105 LALNTNQ-LQSLPDGVFDKLTQLKDL 129 (208)
T ss_dssp EECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred EEcCCCc-CcccCHhHhccCCcCCEE
Confidence 9999998 5666665 6778888765
No 51
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.13 E-value=8.2e-11 Score=120.47 Aligned_cols=98 Identities=23% Similarity=0.259 Sum_probs=59.6
Q ss_pred ccccceeeEEeecCCCCCCCc-Cccc-cccCccEEEccCCCCCCcCC-C-CCCCCCCCEEEeecCCCc--ccCccccCCC
Q 017543 266 SQHLNTLVVLNLRDCKSLKSL-PAGI-HLEFLKELDLSGCSKLKRLP-D-ISSAANIEEMFLNGTAIE--ELPSSIECLY 339 (369)
Q Consensus 266 ~~~l~~L~~L~L~~n~~l~~l-P~~i-~L~~L~~L~Ls~~~~l~~lP-~-i~~L~~L~~L~Ls~n~l~--~LP~~i~~L~ 339 (369)
+..+++|++|+|++|. +..+ |..+ ++++|++|+|++ +.+..+| . ++++++|++|+|++|.+. .+|..+++|+
T Consensus 76 ~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~ 153 (606)
T 3vq2_A 76 WHGLHHLSNLILTGNP-IQSFSPGSFSGLTSLENLVAVE-TKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT 153 (606)
T ss_dssp TTTCTTCCEEECTTCC-CCCCCTTSSTTCTTCCEEECTT-SCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCT
T ss_pred hhchhhcCEeECCCCc-ccccChhhcCCcccCCEEEccC-CccccccccccCCCCCCCEEeCCCCcccceechHhHhhcC
Confidence 4566666777776663 4444 5555 666677777766 3444554 3 666667777777766665 4566666777
Q ss_pred CCcEEecccCCCCCcCCccccCCCCC
Q 017543 340 KLLHLDLEDCKSLKSLPSGLFLCRNK 365 (369)
Q Consensus 340 ~L~~L~Ls~n~~l~~lP~~i~~L~~L 365 (369)
+|++|++++|++.+..|..+..+.+|
T Consensus 154 ~L~~L~Ls~n~l~~~~~~~~~~l~~L 179 (606)
T 3vq2_A 154 NLVHVDLSYNYIQTITVNDLQFLREN 179 (606)
T ss_dssp TCCEEECCSSCCCEECTTTTHHHHHC
T ss_pred CCCEEEccCCcceecChhhhhhhhcc
Confidence 77777777666444444445444433
No 52
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.13 E-value=1e-10 Score=119.56 Aligned_cols=119 Identities=21% Similarity=0.252 Sum_probs=96.4
Q ss_pred hhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCcc-c-cccCccEEEccCCCCCCcCCC--CCCCCCCCEE
Q 017543 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAG-I-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEM 321 (369)
Q Consensus 246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~-i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L 321 (369)
++.+.+ +.+.++.++... +..+++|++|+|++| .+..+|+. + +|++|++|+|++ +.++.+|. +++|++|++|
T Consensus 54 ~~~LdL-s~N~i~~l~~~~-f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~-N~l~~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 54 TKNLDL-SFNPLRHLGSYS-FFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTG-NPIQSLALGAFSGLSSLQKL 129 (635)
T ss_dssp CCEEEC-TTSCCCEECTTT-TTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTT-CCCCEECGGGGTTCTTCCEE
T ss_pred CCEEEe-eCCCCCCCCHHH-HhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccC-CcCCCCCHHHhcCCCCCCEE
Confidence 344444 346677776533 578999999999999 58888775 5 899999999998 56888885 8999999999
Q ss_pred EeecCCCcccCcc-ccCCCCCcEEecccCCCCC-cCCccccCCCCCCCC
Q 017543 322 FLNGTAIEELPSS-IECLYKLLHLDLEDCKSLK-SLPSGLFLCRNKCRI 368 (369)
Q Consensus 322 ~Ls~n~l~~LP~~-i~~L~~L~~L~Ls~n~~l~-~lP~~i~~L~~L~~L 368 (369)
+|++|.|+.+|.. +++|++|++|+|++|.+.. .+|..+..+++|++|
T Consensus 130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L 178 (635)
T 4g8a_A 130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 178 (635)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhh
Confidence 9999999998864 8999999999999998433 568888888888876
No 53
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.13 E-value=1.8e-10 Score=106.57 Aligned_cols=100 Identities=33% Similarity=0.461 Sum_probs=84.0
Q ss_pred ccccceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCcccCcc-ccCCCC
Q 017543 266 SQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPSS-IECLYK 340 (369)
Q Consensus 266 ~~~l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~LP~~-i~~L~~ 340 (369)
+..+++|++|++++| .+..+|... .+++|++|+|++ +.+..+|. ++.+++|++|+|++|.++.+|.. ++++++
T Consensus 81 l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 158 (272)
T 3rfs_A 81 LKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVE-NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTN 158 (272)
T ss_dssp GTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEECCC-CcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCcc
Confidence 678899999999999 577777764 899999999999 45667775 89999999999999999988876 589999
Q ss_pred CcEEecccCCCCCcCCcc-ccCCCCCCCC
Q 017543 341 LLHLDLEDCKSLKSLPSG-LFLCRNKCRI 368 (369)
Q Consensus 341 L~~L~Ls~n~~l~~lP~~-i~~L~~L~~L 368 (369)
|++|++++|+ +..+|.. +..+++|+.|
T Consensus 159 L~~L~l~~n~-l~~~~~~~~~~l~~L~~L 186 (272)
T 3rfs_A 159 LTELDLSYNQ-LQSLPEGVFDKLTQLKDL 186 (272)
T ss_dssp CCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred CCEEECCCCC-cCccCHHHhcCCccCCEE
Confidence 9999999998 4555554 5778888765
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.12 E-value=1.1e-10 Score=108.44 Aligned_cols=100 Identities=26% Similarity=0.339 Sum_probs=48.7
Q ss_pred ccccceeeEEeecCCCCCCCcC-ccc-cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCcccCcc-ccCCCC
Q 017543 266 SQHLNTLVVLNLRDCKSLKSLP-AGI-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPSS-IECLYK 340 (369)
Q Consensus 266 ~~~l~~L~~L~L~~n~~l~~lP-~~i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~LP~~-i~~L~~ 340 (369)
+..+++|+.|++++|. +..++ ..+ .+++|++|+|++ +.+..+|. ++.+++|++|+|++|.|+.+|.. ++.+++
T Consensus 101 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 178 (285)
T 1ozn_A 101 FHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQD-NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS 178 (285)
T ss_dssp TTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred hcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCC-CcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccc
Confidence 3445555555555552 33332 223 455555555555 33444442 45555555555555555555443 455555
Q ss_pred CcEEecccCCCCCcCCccccCCCCCCC
Q 017543 341 LLHLDLEDCKSLKSLPSGLFLCRNKCR 367 (369)
Q Consensus 341 L~~L~Ls~n~~l~~lP~~i~~L~~L~~ 367 (369)
|++|+|++|++.+..|..+..+++|+.
T Consensus 179 L~~L~l~~n~l~~~~~~~~~~l~~L~~ 205 (285)
T 1ozn_A 179 LDRLLLHQNRVAHVHPHAFRDLGRLMT 205 (285)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred cCEEECCCCcccccCHhHccCcccccE
Confidence 555555555533333555555544443
No 55
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.12 E-value=2.9e-10 Score=97.91 Aligned_cols=93 Identities=25% Similarity=0.371 Sum_probs=76.1
Q ss_pred eeEEeecCCCCCCCcCccccccCccEEEccCCCCCCcCC-C-CCCCCCCCEEEeecCCCcccCcc-ccCCCCCcEEeccc
Q 017543 272 LVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLP-D-ISSAANIEEMFLNGTAIEELPSS-IECLYKLLHLDLED 348 (369)
Q Consensus 272 L~~L~L~~n~~l~~lP~~i~L~~L~~L~Ls~~~~l~~lP-~-i~~L~~L~~L~Ls~n~l~~LP~~-i~~L~~L~~L~Ls~ 348 (369)
.+.|++++| .+..+|..+ ..+|++|+|++ +.+..++ . ++.+++|++|+|++|+|+.+|.. ++.|++|++|+|++
T Consensus 11 ~~~l~~s~n-~l~~ip~~~-~~~l~~L~L~~-N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGK-SLASVPTGI-PTTTQVLYLYD-NQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTS-CCSSCCSCC-CTTCSEEECCS-SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCC-CcCccCccC-CCCCcEEEcCC-CcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 567899998 588898776 47889999998 5676774 4 88999999999999999988876 48999999999999
Q ss_pred CCCCCcCCcc-ccCCCCCCCC
Q 017543 349 CKSLKSLPSG-LFLCRNKCRI 368 (369)
Q Consensus 349 n~~l~~lP~~-i~~L~~L~~L 368 (369)
|+ +..+|.. +..+++|+.|
T Consensus 88 N~-l~~~~~~~~~~l~~L~~L 107 (170)
T 3g39_A 88 NQ-LKSIPRGAFDNLKSLTHI 107 (170)
T ss_dssp SC-CCCCCTTTTTTCTTCCEE
T ss_pred Cc-cCEeCHHHhcCCCCCCEE
Confidence 88 6667664 7778888765
No 56
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.12 E-value=1.8e-10 Score=101.18 Aligned_cols=101 Identities=22% Similarity=0.290 Sum_probs=83.3
Q ss_pred cccccCCCCCCCccccceeeEEeecCCCCCCCc-Cccc-cccCccEEEccCCCCCCcCC-C-CCCCCCCCEEEeecCCCc
Q 017543 254 CNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSL-PAGI-HLEFLKELDLSGCSKLKRLP-D-ISSAANIEEMFLNGTAIE 329 (369)
Q Consensus 254 ~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~l-P~~i-~L~~L~~L~Ls~~~~l~~lP-~-i~~L~~L~~L~Ls~n~l~ 329 (369)
.+.+..++....+..+++|+.|+|++| .+..+ |..+ .+++|++|+|++ +.+..+| . ++.+++|++|+|++|.|+
T Consensus 38 ~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 115 (192)
T 1w8a_A 38 DNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGE-NKIKEISNKMFLGLHQLKTLNLYDNQIS 115 (192)
T ss_dssp SCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCS-CCCCEECSSSSTTCTTCCEEECCSSCCC
T ss_pred CCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCC-CcCCccCHHHhcCCCCCCEEECCCCcCC
Confidence 345666655444678999999999999 47666 6667 899999999999 5566666 4 899999999999999999
Q ss_pred cc-CccccCCCCCcEEecccCCCCCcCC
Q 017543 330 EL-PSSIECLYKLLHLDLEDCKSLKSLP 356 (369)
Q Consensus 330 ~L-P~~i~~L~~L~~L~Ls~n~~l~~lP 356 (369)
.+ |..++.+++|++|+|++|++.+..|
T Consensus 116 ~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 116 CVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp EECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred eeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 65 7789999999999999999766554
No 57
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.11 E-value=1.3e-10 Score=107.45 Aligned_cols=118 Identities=24% Similarity=0.249 Sum_probs=82.4
Q ss_pred hhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCc-cc-cccCccEEEccCCCCCCcCCC--CCCCCCCCEE
Q 017543 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPA-GI-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEM 321 (369)
Q Consensus 246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~-~i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L 321 (369)
|+.+....+ .+..++.. .+..+++|+.|++++| .+..++. .+ .+++|++|++++ +.+..++. ++++++|++|
T Consensus 54 L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L 129 (276)
T 2z62_A 54 LQVLDLSRC-EIQTIEDG-AYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVE-TNLASLENFPIGHLKTLKEL 129 (276)
T ss_dssp CSEEECTTC-CCCEECTT-TTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTT-SCCCCSTTCCCTTCTTCCEE
T ss_pred CcEEECCCC-cCCccCHH-HccCCcCCCEEECCCC-ccCccChhhhcCCccccEEECCC-CCccccCchhcccCCCCCEE
Confidence 444444433 34444432 2567888888888888 4666664 45 788899999888 45666664 8888889999
Q ss_pred EeecCCCcc--cCccccCCCCCcEEecccCCCCCcCCccccCCCCCCC
Q 017543 322 FLNGTAIEE--LPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCR 367 (369)
Q Consensus 322 ~Ls~n~l~~--LP~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~ 367 (369)
+|++|.++. +|..++++++|++|+|++|++.+..|..+..+++|..
T Consensus 130 ~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 177 (276)
T 2z62_A 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177 (276)
T ss_dssp ECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTT
T ss_pred ECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccc
Confidence 999888875 6888888899999999888844444455665655553
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.10 E-value=1.2e-10 Score=115.51 Aligned_cols=102 Identities=22% Similarity=0.286 Sum_probs=63.7
Q ss_pred ccccceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCccc-CccccCCCCCc
Q 017543 266 SQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEEL-PSSIECLYKLL 342 (369)
Q Consensus 266 ~~~l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~L-P~~i~~L~~L~ 342 (369)
+..+++|+.|++++|..++.+|... .+++|++|+|++ +.+..+|.+..+++|++|+|++|.|+.+ |..++++++|+
T Consensus 167 ~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 245 (452)
T 3zyi_A 167 FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM-CNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLK 245 (452)
T ss_dssp TTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTT-SCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCC
T ss_pred HhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCC-CcccccccccccccccEEECcCCcCcccCcccccCccCCC
Confidence 3455666666666654555555543 566666666666 4455666666666777777777766654 45567777777
Q ss_pred EEecccCCCCCcCCccccCCCCCCCC
Q 017543 343 HLDLEDCKSLKSLPSGLFLCRNKCRI 368 (369)
Q Consensus 343 ~L~Ls~n~~l~~lP~~i~~L~~L~~L 368 (369)
+|+|++|++.+..|..+..+++|+.|
T Consensus 246 ~L~L~~n~l~~~~~~~~~~l~~L~~L 271 (452)
T 3zyi_A 246 KLWVMNSQVSLIERNAFDGLASLVEL 271 (452)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred EEEeCCCcCceECHHHhcCCCCCCEE
Confidence 77777776544455566666666554
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.10 E-value=1.2e-10 Score=114.99 Aligned_cols=101 Identities=21% Similarity=0.323 Sum_probs=55.6
Q ss_pred cccceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCccc-CccccCCCCCcE
Q 017543 267 QHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEEL-PSSIECLYKLLH 343 (369)
Q Consensus 267 ~~l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~L-P~~i~~L~~L~~ 343 (369)
..+++|+.|+|++|+.++.+|... .+++|++|+|++ +.+..+|.+..+++|+.|+|++|.|+.+ |..+..+++|+.
T Consensus 157 ~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 235 (440)
T 3zyj_A 157 NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM-CNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQK 235 (440)
T ss_dssp TTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT-SCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred hhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCC-CcCccccccCCCcccCEEECCCCccCccChhhhccCccCCE
Confidence 345555555555544455554432 555566666665 3455555555566666666666666544 445566666666
Q ss_pred EecccCCCCCcCCccccCCCCCCCC
Q 017543 344 LDLEDCKSLKSLPSGLFLCRNKCRI 368 (369)
Q Consensus 344 L~Ls~n~~l~~lP~~i~~L~~L~~L 368 (369)
|+|++|++.+..|..+..+++|+.|
T Consensus 236 L~L~~n~l~~~~~~~~~~l~~L~~L 260 (440)
T 3zyj_A 236 LWMIQSQIQVIERNAFDNLQSLVEI 260 (440)
T ss_dssp EECTTCCCCEECTTSSTTCTTCCEE
T ss_pred EECCCCceeEEChhhhcCCCCCCEE
Confidence 6666666444444455555555544
No 60
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.09 E-value=4.8e-11 Score=123.76 Aligned_cols=106 Identities=16% Similarity=0.245 Sum_probs=74.9
Q ss_pred CCCCCCcc--ccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCC--cCCC-CCCC------CCCCEEEeecCC
Q 017543 260 TPNPSFSQ--HLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLK--RLPD-ISSA------ANIEEMFLNGTA 327 (369)
Q Consensus 260 ~p~~~~~~--~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~--~lP~-i~~L------~~L~~L~Ls~n~ 327 (369)
+|.. ++ ++++|++|+|++|...+.+|..+ ++++|++|+|++|..+. .+|. +++| ++|++|+|++|.
T Consensus 239 ip~~--l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~ 316 (636)
T 4eco_A 239 KTED--LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316 (636)
T ss_dssp TTSC--CCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred Cchh--hhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc
Confidence 5544 55 77777777777776566777777 77777777777755244 4775 6665 777777777777
Q ss_pred CcccCc--cccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543 328 IEELPS--SIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI 368 (369)
Q Consensus 328 l~~LP~--~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L 368 (369)
++.+|. .++++++|++|++++|++.+.+| .+..+++|+.|
T Consensus 317 l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L 358 (636)
T 4eco_A 317 LKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASL 358 (636)
T ss_dssp CSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEE
T ss_pred CCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEE
Confidence 777777 77777777777777777555777 66666666554
No 61
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.09 E-value=3.3e-10 Score=104.49 Aligned_cols=96 Identities=21% Similarity=0.235 Sum_probs=50.4
Q ss_pred ccccceeeEEeecCCCCCCCcCccccccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccCccccCCCCCcEEe
Q 017543 266 SQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLD 345 (369)
Q Consensus 266 ~~~l~~L~~L~L~~n~~l~~lP~~i~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L~ 345 (369)
+..+++|+.|++++| .+..+|.... .+|+.|+|++ +.+..+|.++.+++|+.|+|++|.|+.+| .++.+++|++|+
T Consensus 81 l~~l~~L~~L~L~~N-~l~~l~~~~~-~~L~~L~L~~-N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~ 156 (263)
T 1xeu_A 81 LKDLTKLEELSVNRN-RLKNLNGIPS-ACLSRLFLDN-NELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLD 156 (263)
T ss_dssp GTTCSSCCEEECCSS-CCSCCTTCCC-SSCCEEECCS-SCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEE
T ss_pred hccCCCCCEEECCCC-ccCCcCcccc-CcccEEEccC-CccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEE
Confidence 344555555555555 3444443223 5555555555 34444544555666666666666666554 455666666666
Q ss_pred cccCCCCCcCCccccCCCCCCC
Q 017543 346 LEDCKSLKSLPSGLFLCRNKCR 367 (369)
Q Consensus 346 Ls~n~~l~~lP~~i~~L~~L~~ 367 (369)
|++|+ +..+ ..+..+++|+.
T Consensus 157 L~~N~-i~~~-~~l~~l~~L~~ 176 (263)
T 1xeu_A 157 LHGNE-ITNT-GGLTRLKKVNW 176 (263)
T ss_dssp CTTSC-CCBC-TTSTTCCCCCE
T ss_pred CCCCc-Ccch-HHhccCCCCCE
Confidence 66655 3333 34445555544
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.09 E-value=8.3e-11 Score=111.23 Aligned_cols=100 Identities=13% Similarity=0.152 Sum_probs=80.7
Q ss_pred ccccceeeEEeecCCCCCCCcC-ccc--cccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccCccccCCCCCc
Q 017543 266 SQHLNTLVVLNLRDCKSLKSLP-AGI--HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLL 342 (369)
Q Consensus 266 ~~~l~~L~~L~L~~n~~l~~lP-~~i--~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~ 342 (369)
+..+++|+.|++++| .+..++ ..+ .+++|++|+|++ +.+..+|....+++|++|+|++|.|+.+|..++.+++|+
T Consensus 140 ~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~ 217 (317)
T 3o53_A 140 EGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQY-NFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVT 217 (317)
T ss_dssp TGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTT-SCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCS
T ss_pred hhccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCC-CcCcccccccccccCCEEECCCCcCCcchhhhcccCccc
Confidence 566888999999988 466543 444 578899999998 557777776668899999999999998888888899999
Q ss_pred EEecccCCCCCcCCccccCCCCCCCC
Q 017543 343 HLDLEDCKSLKSLPSGLFLCRNKCRI 368 (369)
Q Consensus 343 ~L~Ls~n~~l~~lP~~i~~L~~L~~L 368 (369)
+|+|++|+ +..+|..+..+++|+.|
T Consensus 218 ~L~L~~N~-l~~l~~~~~~l~~L~~L 242 (317)
T 3o53_A 218 WISLRNNK-LVLIEKALRFSQNLEHF 242 (317)
T ss_dssp EEECTTSC-CCEECTTCCCCTTCCEE
T ss_pred EEECcCCc-ccchhhHhhcCCCCCEE
Confidence 99999887 66888888888887765
No 63
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.09 E-value=2.3e-10 Score=107.91 Aligned_cols=97 Identities=20% Similarity=0.363 Sum_probs=68.0
Q ss_pred ccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccCccccCCCCCcEE
Q 017543 266 SQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHL 344 (369)
Q Consensus 266 ~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L 344 (369)
+..+++|+.|++++| .+..+| .+ .+++|++|+|++ +.+..+|.++.+++|++|+|++|.+..+|. ++.+++|++|
T Consensus 81 ~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~l~~-n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L 156 (308)
T 1h6u_A 81 LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLDLTS-TQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYL 156 (308)
T ss_dssp GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEECTT-SCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEE
T ss_pred HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEEECCC-CCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEE
Confidence 456677777777777 366665 34 677777777777 446666667777777777777777777765 7777778888
Q ss_pred ecccCCCCCcCCccccCCCCCCCC
Q 017543 345 DLEDCKSLKSLPSGLFLCRNKCRI 368 (369)
Q Consensus 345 ~Ls~n~~l~~lP~~i~~L~~L~~L 368 (369)
+|++|+ +..+|. +..+++|+.|
T Consensus 157 ~l~~n~-l~~~~~-l~~l~~L~~L 178 (308)
T 1h6u_A 157 SIGNAQ-VSDLTP-LANLSKLTTL 178 (308)
T ss_dssp ECCSSC-CCCCGG-GTTCTTCCEE
T ss_pred EccCCc-CCCChh-hcCCCCCCEE
Confidence 887776 555665 6666666654
No 64
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.08 E-value=5.2e-11 Score=107.76 Aligned_cols=118 Identities=15% Similarity=0.206 Sum_probs=77.4
Q ss_pred hhhhhhhhcccccCCCCCCCccccceeeEEeecC-CCCCCCcCcc-c-cccCccEEEccCCCCCCcCCCCCCCCCCC---
Q 017543 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRD-CKSLKSLPAG-I-HLEFLKELDLSGCSKLKRLPDISSAANIE--- 319 (369)
Q Consensus 246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~-n~~l~~lP~~-i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~--- 319 (369)
|+.+....+..++.++.. .+..+++|+.|++++ | .+..+|.. + .+++|++|+|++ +.+..+|.++.+++|+
T Consensus 57 L~~L~l~~n~~l~~i~~~-~f~~l~~L~~L~l~~~n-~l~~i~~~~f~~l~~L~~L~l~~-n~l~~lp~~~~l~~L~~L~ 133 (239)
T 2xwt_C 57 ISRIYVSIDVTLQQLESH-SFYNLSKVTHIEIRNTR-NLTYIDPDALKELPLLKFLGIFN-TGLKMFPDLTKVYSTDIFF 133 (239)
T ss_dssp CCEEEEECCSSCCEECTT-TEESCTTCCEEEEEEET-TCCEECTTSEECCTTCCEEEEEE-ECCCSCCCCTTCCBCCSEE
T ss_pred CcEEeCCCCCCcceeCHh-HcCCCcCCcEEECCCCC-CeeEcCHHHhCCCCCCCEEeCCC-CCCcccccccccccccccc
Confidence 333434333225555432 245677788888877 5 57777654 3 777888888887 4566677777777776
Q ss_pred EEEeecC-CCcccCcc-ccCCCCCc-EEecccCCCCCcCCccccCCCCCCC
Q 017543 320 EMFLNGT-AIEELPSS-IECLYKLL-HLDLEDCKSLKSLPSGLFLCRNKCR 367 (369)
Q Consensus 320 ~L~Ls~n-~l~~LP~~-i~~L~~L~-~L~Ls~n~~l~~lP~~i~~L~~L~~ 367 (369)
+|++++| .++.+|.. ++.+++|+ +|++++|+ +..+|..++..++|+.
T Consensus 134 ~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~~~L~~ 183 (239)
T 2xwt_C 134 ILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNGTKLDA 183 (239)
T ss_dssp EEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTTTCEEEE
T ss_pred EEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcCCCCCCE
Confidence 8888888 77777764 67788888 88888777 5577776655454443
No 65
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.08 E-value=1.3e-11 Score=127.97 Aligned_cols=119 Identities=18% Similarity=0.246 Sum_probs=101.1
Q ss_pred hhhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCC--CcCccc-cc------cCccEEEccCCCCCCcCCC---C
Q 017543 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLK--SLPAGI-HL------EFLKELDLSGCSKLKRLPD---I 312 (369)
Q Consensus 245 aL~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~--~lP~~i-~L------~~L~~L~Ls~~~~l~~lP~---i 312 (369)
.|+.+.+..|.....+|.. ++++++|+.|++++|..+. .+|..+ .| ++|++|+|++| .+..+|. +
T Consensus 250 ~L~~L~L~~n~l~~~~p~~--l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l 326 (636)
T 4eco_A 250 DLTDVEVYNCPNLTKLPTF--LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETSL 326 (636)
T ss_dssp TCCEEEEECCTTCSSCCTT--TTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHH
T ss_pred CCCEEEecCCcCCccChHH--HhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhhh
Confidence 3455555566666677754 7899999999999995255 599888 76 99999999995 5669997 8
Q ss_pred CCCCCCCEEEeecCCCc-ccCccccCCCCCcEEecccCCCCCcCCccccCCCC-CCCC
Q 017543 313 SSAANIEEMFLNGTAIE-ELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRN-KCRI 368 (369)
Q Consensus 313 ~~L~~L~~L~Ls~n~l~-~LP~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~-L~~L 368 (369)
+++++|++|+|++|.+. .+| .++++++|++|+|++|+ +..+|..+..+++ |+.|
T Consensus 327 ~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L 382 (636)
T 4eco_A 327 QKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENL 382 (636)
T ss_dssp TTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSE-EEECCTTSEEECTTCCEE
T ss_pred ccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCc-cccccHhhhhhcccCcEE
Confidence 99999999999999999 999 99999999999999998 6699999999988 8776
No 66
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.08 E-value=1.7e-10 Score=116.90 Aligned_cols=116 Identities=24% Similarity=0.279 Sum_probs=77.9
Q ss_pred hhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcC-ccc-cccCccEEEccCCCCCCcCCC--CCCCCCCCEE
Q 017543 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLP-AGI-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEM 321 (369)
Q Consensus 246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP-~~i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L 321 (369)
|+.+....+ .+..++. ..+..+++|++|+|++| .+..+| ..+ .+++|++|++++ +.+..+|. +++|++|++|
T Consensus 54 L~~L~Ls~n-~i~~i~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~~~l~~L~~L 129 (570)
T 2z63_A 54 LQVLDLSRC-EIQTIED-GAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVE-TNLASLENFPIGHLKTLKEL 129 (570)
T ss_dssp CCEEECTTC-CCCEECT-TTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTT-SCCCCSTTCSCTTCTTCCEE
T ss_pred ceEEECCCC-cCCccCc-ccccCchhCCEEeCcCC-cCCccCHhhhcCccccccccccc-cccccCCCccccccccccEE
Confidence 344444443 3444432 22567788888888887 466665 345 788888888887 45667764 7788888888
Q ss_pred EeecCCCcc--cCccccCCCCCcEEecccCCCCCcCCccccCCCCC
Q 017543 322 FLNGTAIEE--LPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNK 365 (369)
Q Consensus 322 ~Ls~n~l~~--LP~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L 365 (369)
+|++|.++. +|..+++|++|++|++++|++.+..|..+..+++|
T Consensus 130 ~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (570)
T ss_dssp ECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred ecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence 888887774 67888888888888888887444445566666555
No 67
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.07 E-value=2.1e-10 Score=107.50 Aligned_cols=101 Identities=25% Similarity=0.332 Sum_probs=82.8
Q ss_pred ccccceeeEEeecCCCCCCC--cCccc-cccCccEEEccCCCCCCcC-CC-CCCCCCCCEEEeecCCCcccCc-cccCCC
Q 017543 266 SQHLNTLVVLNLRDCKSLKS--LPAGI-HLEFLKELDLSGCSKLKRL-PD-ISSAANIEEMFLNGTAIEELPS-SIECLY 339 (369)
Q Consensus 266 ~~~l~~L~~L~L~~n~~l~~--lP~~i-~L~~L~~L~Ls~~~~l~~l-P~-i~~L~~L~~L~Ls~n~l~~LP~-~i~~L~ 339 (369)
+..+++|+.|++++|. +.. +|..+ .+++|++|+|++| .+..+ |. ++.+++|++|+|++|.++.+|. .++.++
T Consensus 146 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 223 (306)
T 2z66_A 146 FNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 223 (306)
T ss_dssp TTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCT
T ss_pred cccCcCCCEEECCCCc-cccccchhHHhhCcCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcc
Confidence 5678899999999984 553 77777 8999999999985 45555 55 8899999999999999988765 678899
Q ss_pred CCcEEecccCCCCCcCCccccCCC-CCCCC
Q 017543 340 KLLHLDLEDCKSLKSLPSGLFLCR-NKCRI 368 (369)
Q Consensus 340 ~L~~L~Ls~n~~l~~lP~~i~~L~-~L~~L 368 (369)
+|++|+|++|++.+..|..+..++ +|+.|
T Consensus 224 ~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L 253 (306)
T 2z66_A 224 SLQVLDYSLNHIMTSKKQELQHFPSSLAFL 253 (306)
T ss_dssp TCCEEECTTSCCCBCSSSSCCCCCTTCCEE
T ss_pred cCCEeECCCCCCcccCHHHHHhhhccCCEE
Confidence 999999999997777888888774 77654
No 68
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.07 E-value=2.8e-10 Score=98.14 Aligned_cols=107 Identities=28% Similarity=0.469 Sum_probs=87.9
Q ss_pred ccccCCCCCCCccccceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCcc
Q 017543 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEE 330 (369)
Q Consensus 255 ~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~ 330 (369)
+.+..+|.. ..++|+.|++++| .+..+|... .+++|++|+|++ +.+..+|. ++.+++|++|+|++|.|+.
T Consensus 17 ~~l~~~p~~----~~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 90 (177)
T 2o6r_A 17 KGLTSVPTG----IPSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQ-NQIQSLPDGVFDKLTKLTILYLHENKLQS 90 (177)
T ss_dssp SCCSSCCTT----CCTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCccCCCC----CCCCCcEEEeCCC-cccEeCHHHhcCcccccEEECCC-CcceEeChhHccCCCccCEEECCCCCccc
Confidence 335555532 3468999999999 578888764 799999999999 56788885 7999999999999999999
Q ss_pred cCcc-ccCCCCCcEEecccCCCCCcCCccc-cCCCCCCCC
Q 017543 331 LPSS-IECLYKLLHLDLEDCKSLKSLPSGL-FLCRNKCRI 368 (369)
Q Consensus 331 LP~~-i~~L~~L~~L~Ls~n~~l~~lP~~i-~~L~~L~~L 368 (369)
+|.. ++.+++|++|+|++|+ +..+|..+ ..+++|++|
T Consensus 91 ~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L 129 (177)
T 2o6r_A 91 LPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKI 129 (177)
T ss_dssp CCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEE
T ss_pred cCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEE
Confidence 8876 6899999999999998 66788765 668888765
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.07 E-value=1e-10 Score=117.59 Aligned_cols=100 Identities=13% Similarity=0.129 Sum_probs=82.6
Q ss_pred ccccceeeEEeecCCCCCCC-cCccc--cccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccCccccCCCCCc
Q 017543 266 SQHLNTLVVLNLRDCKSLKS-LPAGI--HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLL 342 (369)
Q Consensus 266 ~~~l~~L~~L~L~~n~~l~~-lP~~i--~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~ 342 (369)
++.+++|+.|+|++|. +.. .|..+ .+++|+.|+|++ +.+..+|.+..+++|++|+|++|.|+.+|..++.+++|+
T Consensus 140 ~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L~~L~Ls~-N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~ 217 (487)
T 3oja_A 140 EGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQY-NFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVT 217 (487)
T ss_dssp GGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTT-SCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCS
T ss_pred hcCCCCCCEEECCCCC-CCCcChHHHhhhCCcccEEecCC-CccccccccccCCCCCEEECCCCCCCCCCHhHcCCCCcc
Confidence 5678899999999985 554 55555 589999999998 557777776678999999999999999988899999999
Q ss_pred EEecccCCCCCcCCccccCCCCCCCC
Q 017543 343 HLDLEDCKSLKSLPSGLFLCRNKCRI 368 (369)
Q Consensus 343 ~L~Ls~n~~l~~lP~~i~~L~~L~~L 368 (369)
+|+|++|. +..+|..+..+++|..|
T Consensus 218 ~L~Ls~N~-l~~lp~~l~~l~~L~~L 242 (487)
T 3oja_A 218 WISLRNNK-LVLIEKALRFSQNLEHF 242 (487)
T ss_dssp EEECTTSC-CCEECTTCCCCTTCCEE
T ss_pred EEEecCCc-CcccchhhccCCCCCEE
Confidence 99999988 66789888888887765
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.07 E-value=2e-10 Score=106.10 Aligned_cols=91 Identities=29% Similarity=0.421 Sum_probs=39.9
Q ss_pred cccceeeEEeecCCCCCCCcCc-cc-cccCccEEEccCCCCCCc--CCC-CCCCCCCCEEEeecCCCcccCc-cccCCCC
Q 017543 267 QHLNTLVVLNLRDCKSLKSLPA-GI-HLEFLKELDLSGCSKLKR--LPD-ISSAANIEEMFLNGTAIEELPS-SIECLYK 340 (369)
Q Consensus 267 ~~l~~L~~L~L~~n~~l~~lP~-~i-~L~~L~~L~Ls~~~~l~~--lP~-i~~L~~L~~L~Ls~n~l~~LP~-~i~~L~~ 340 (369)
..+++|+.|++++| .+..++. .+ .+++|++|+|++| .+.. +|. ++++++|++|+|++|.++.+|. .+..+.+
T Consensus 97 ~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 174 (276)
T 2z62_A 97 SGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174 (276)
T ss_dssp TTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHT
T ss_pred cCCccccEEECCCC-CccccCchhcccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhh
Confidence 34445555555554 2333333 23 4555555555542 2322 343 4455555555555555544432 2333333
Q ss_pred Cc----EEecccCCCCCcCCcccc
Q 017543 341 LL----HLDLEDCKSLKSLPSGLF 360 (369)
Q Consensus 341 L~----~L~Ls~n~~l~~lP~~i~ 360 (369)
|+ .|++++|+ +..+|..+.
T Consensus 175 L~~l~l~L~ls~n~-l~~~~~~~~ 197 (276)
T 2z62_A 175 MPLLNLSLDLSLNP-MNFIQPGAF 197 (276)
T ss_dssp CTTCCEEEECCSSC-CCEECTTSS
T ss_pred ccccceeeecCCCc-ccccCcccc
Confidence 33 44555544 334444333
No 71
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.06 E-value=1.8e-10 Score=111.70 Aligned_cols=115 Identities=15% Similarity=0.212 Sum_probs=78.2
Q ss_pred hhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCcc-c-cccCccEEEccCCCCCCcCCC--CCCCCCCCEE
Q 017543 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAG-I-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEM 321 (369)
Q Consensus 246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~-i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L 321 (369)
|+.+....+ .+..++.. .+..+++|+.|+|++| .+..+|+. + .+++|++|+|++ +.+..+|. ++++++|++|
T Consensus 71 L~~L~L~~n-~i~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~~~l~~L~~L 146 (390)
T 3o6n_A 71 VELLNLNDL-QIEEIDTY-AFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLER-NDLSSLPRGIFHNTPKLTTL 146 (390)
T ss_dssp CSEEECTTS-CCCEECTT-TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEE
T ss_pred CcEEECCCC-cccccChh-hccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCEEECCC-CccCcCCHHHhcCCCCCcEE
Confidence 444444333 34444432 2567888888888888 46666554 4 788888888888 56777875 5788888888
Q ss_pred EeecCCCcccCc-cccCCCCCcEEecccCCCCCcCCccccCCCCCCC
Q 017543 322 FLNGTAIEELPS-SIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCR 367 (369)
Q Consensus 322 ~Ls~n~l~~LP~-~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~ 367 (369)
+|++|.+..+|. .++++++|++|++++|+ +..+| +..+++|++
T Consensus 147 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~--~~~l~~L~~ 190 (390)
T 3o6n_A 147 SMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD--LSLIPSLFH 190 (390)
T ss_dssp ECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCC--GGGCTTCSE
T ss_pred ECCCCccCccChhhccCCCCCCEEECCCCc-CCccc--cccccccce
Confidence 888888886644 47888888888888887 55554 344455544
No 72
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.06 E-value=1.7e-10 Score=118.67 Aligned_cols=115 Identities=15% Similarity=0.218 Sum_probs=76.6
Q ss_pred hhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCC--CCCCCCCCEE
Q 017543 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEM 321 (369)
Q Consensus 246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L 321 (369)
|+.+.+..+ .+..++.. .+..+++|+.|+|++| .+..+|+.. .+++|++|+|++ +.+..+|. ++++++|++|
T Consensus 77 L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~~~l~~L~~L 152 (597)
T 3oja_B 77 VELLNLNDL-QIEEIDTY-AFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLER-NDLSSLPRGIFHNTPKLTTL 152 (597)
T ss_dssp CSEEECTTS-CCCEECTT-TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEE
T ss_pred CcEEECCCC-CCCCCChH-HhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCEEEeeC-CCCCCCCHHHhccCCCCCEE
Confidence 444444333 34444332 2567888888888888 466666543 788888888887 45667775 5788888888
Q ss_pred EeecCCCcccCc-cccCCCCCcEEecccCCCCCcCCccccCCCCCCC
Q 017543 322 FLNGTAIEELPS-SIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCR 367 (369)
Q Consensus 322 ~Ls~n~l~~LP~-~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~ 367 (369)
+|++|.|..+|. .++++++|++|+|++|. +..+| +..+++|.+
T Consensus 153 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~--~~~l~~L~~ 196 (597)
T 3oja_B 153 SMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD--LSLIPSLFH 196 (597)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC--GGGCTTCSE
T ss_pred EeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC--hhhhhhhhh
Confidence 888888876654 57888888888888887 45554 333455443
No 73
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.06 E-value=3.8e-10 Score=108.06 Aligned_cols=120 Identities=21% Similarity=0.180 Sum_probs=87.7
Q ss_pred hhhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCc-cc-cccCccEEEccCCCCCCcCCC--CCCCCCCCE
Q 017543 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPA-GI-HLEFLKELDLSGCSKLKRLPD--ISSAANIEE 320 (369)
Q Consensus 245 aL~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~-~i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~ 320 (369)
.++.+.... +.+..++.. .+..+++|+.|++++| .+..++. .+ .+++|++|+|++ +.+..+|. ++++++|++
T Consensus 53 ~L~~L~l~~-n~i~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~ 128 (353)
T 2z80_A 53 AVKSLDLSN-NRITYISNS-DLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSY-NYLSNLSSSWFKPLSSLTF 128 (353)
T ss_dssp TCCEEECTT-SCCCEECTT-TTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCS-SCCSSCCHHHHTTCTTCSE
T ss_pred cCcEEECCC-CcCcccCHH-HhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCC-CcCCcCCHhHhCCCccCCE
Confidence 344444444 345555442 2567888999999888 4666654 46 788999999988 56777774 788889999
Q ss_pred EEeecCCCcccCc--cccCCCCCcEEecccCCCCCcC-CccccCCCCCCCC
Q 017543 321 MFLNGTAIEELPS--SIECLYKLLHLDLEDCKSLKSL-PSGLFLCRNKCRI 368 (369)
Q Consensus 321 L~Ls~n~l~~LP~--~i~~L~~L~~L~Ls~n~~l~~l-P~~i~~L~~L~~L 368 (369)
|+|++|.++.+|. .++++++|++|++++|+.++.+ |..+..+++|++|
T Consensus 129 L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 179 (353)
T 2z80_A 129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL 179 (353)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred EECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEE
Confidence 9999998888887 6788899999999888546665 4567777776654
No 74
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.06 E-value=4.6e-10 Score=98.74 Aligned_cols=95 Identities=22% Similarity=0.329 Sum_probs=80.9
Q ss_pred cccccCCCCCCCccccceeeEEeecCCCCCCCcCcc-c-cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCc
Q 017543 254 CNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAG-I-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIE 329 (369)
Q Consensus 254 ~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~-i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~ 329 (369)
.+.+..+|. .+..+++|+.|+|++| .+..++.. + .+++|++|+|++ +.+..+|. ++.+++|++|+|++|.|+
T Consensus 40 ~n~i~~ip~--~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~-N~l~~i~~~~f~~l~~L~~L~L~~N~l~ 115 (193)
T 2wfh_A 40 GNQFTLVPK--ELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSY-NRLRCIPPRTFDGLKSLRLLSLHGNDIS 115 (193)
T ss_dssp SSCCCSCCG--GGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCcCchhHH--HhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCC-CccCEeCHHHhCCCCCCCEEECCCCCCC
Confidence 355667763 3678999999999999 58887765 5 899999999999 56777774 999999999999999999
Q ss_pred ccCcc-ccCCCCCcEEecccCCCC
Q 017543 330 ELPSS-IECLYKLLHLDLEDCKSL 352 (369)
Q Consensus 330 ~LP~~-i~~L~~L~~L~Ls~n~~l 352 (369)
.+|.. +..+++|++|+|++|+..
T Consensus 116 ~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 116 VVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp BCCTTTTTTCTTCCEEECCSSCEE
T ss_pred eeChhhhhcCccccEEEeCCCCee
Confidence 99885 789999999999998843
No 75
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.05 E-value=3.6e-10 Score=106.61 Aligned_cols=113 Identities=18% Similarity=0.289 Sum_probs=91.5
Q ss_pred hhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCCCCCCCCCCEEEee
Q 017543 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLN 324 (369)
Q Consensus 246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls 324 (369)
|+.+.... +.+..++ .+..+++|+.|++++| .+..+|. + .+++|+.|+|++ +.+..+|.++.+++|++|+|+
T Consensus 87 L~~L~L~~-n~l~~~~---~~~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~-n~l~~~~~l~~l~~L~~L~l~ 159 (308)
T 1h6u_A 87 ITELELSG-NPLKNVS---AIAGLQSIKTLDLTST-QITDVTP-LAGLSNLQVLYLDL-NQITNISPLAGLTNLQYLSIG 159 (308)
T ss_dssp CCEEECCS-CCCSCCG---GGTTCTTCCEEECTTS-CCCCCGG-GTTCTTCCEEECCS-SCCCCCGGGGGCTTCCEEECC
T ss_pred CCEEEccC-CcCCCch---hhcCCCCCCEEECCCC-CCCCchh-hcCCCCCCEEECCC-CccCcCccccCCCCccEEEcc
Confidence 33343333 3455554 2678899999999999 5888876 6 899999999998 567788878899999999999
Q ss_pred cCCCcccCccccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543 325 GTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI 368 (369)
Q Consensus 325 ~n~l~~LP~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L 368 (369)
+|.++.+|. ++.+++|++|++++|+ +..+|. +..+++|++|
T Consensus 160 ~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L 200 (308)
T 1h6u_A 160 NAQVSDLTP-LANLSKLTTLKADDNK-ISDISP-LASLPNLIEV 200 (308)
T ss_dssp SSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEE
T ss_pred CCcCCCChh-hcCCCCCCEEECCCCc-cCcChh-hcCCCCCCEE
Confidence 999999887 9999999999999998 667775 7778888765
No 76
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.04 E-value=3.2e-10 Score=106.15 Aligned_cols=97 Identities=23% Similarity=0.337 Sum_probs=78.6
Q ss_pred ccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccCccccCCCCCcEE
Q 017543 266 SQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHL 344 (369)
Q Consensus 266 ~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L 344 (369)
+..+++|+.|++++| .+..++ .+ .+++|+.|+|++ +.+..++.++.+++|+.|+|++|.|+.+|. ++.+++|++|
T Consensus 108 l~~l~~L~~L~L~~n-~i~~~~-~l~~l~~L~~L~l~~-n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L 183 (291)
T 1h6t_A 108 LKDLKKLKSLSLEHN-GISDIN-GLVHLPQLESLYLGN-NKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNL 183 (291)
T ss_dssp GTTCTTCCEEECTTS-CCCCCG-GGGGCTTCCEEECCS-SCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred hccCCCCCEEECCCC-cCCCCh-hhcCCCCCCEEEccC-CcCCcchhhccCCCCCEEEccCCccccchh-hcCCCccCEE
Confidence 567888889999888 577775 45 888899999988 567777668888999999999999988876 8889999999
Q ss_pred ecccCCCCCcCCccccCCCCCCCC
Q 017543 345 DLEDCKSLKSLPSGLFLCRNKCRI 368 (369)
Q Consensus 345 ~Ls~n~~l~~lP~~i~~L~~L~~L 368 (369)
+|++|. +..+|. +..+++|+.|
T Consensus 184 ~L~~N~-i~~l~~-l~~l~~L~~L 205 (291)
T 1h6t_A 184 YLSKNH-ISDLRA-LAGLKNLDVL 205 (291)
T ss_dssp ECCSSC-CCBCGG-GTTCTTCSEE
T ss_pred ECCCCc-CCCChh-hccCCCCCEE
Confidence 999887 677775 7777777765
No 77
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.04 E-value=4.2e-10 Score=103.79 Aligned_cols=77 Identities=26% Similarity=0.337 Sum_probs=39.6
Q ss_pred ceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccCccccCCCCCcEEeccc
Q 017543 270 NTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLED 348 (369)
Q Consensus 270 ~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L~Ls~ 348 (369)
.+|+.|++++| .+..+| .+ .+++|+.|+|++ +.+..+|.++.+++|++|+|++|.|..+ ..++.+++|++|++++
T Consensus 106 ~~L~~L~L~~N-~l~~~~-~l~~l~~L~~L~Ls~-N~i~~~~~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 106 ACLSRLFLDNN-ELRDTD-SLIHLKNLEILSIRN-NKLKSIVMLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTG 181 (263)
T ss_dssp SSCCEEECCSS-CCSBSG-GGTTCTTCCEEECTT-SCCCBCGGGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEE
T ss_pred CcccEEEccCC-ccCCCh-hhcCcccccEEECCC-CcCCCChHHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCC
Confidence 45555555555 344443 23 555555555555 3344444455555555555555555544 3455555555555555
Q ss_pred CC
Q 017543 349 CK 350 (369)
Q Consensus 349 n~ 350 (369)
|+
T Consensus 182 N~ 183 (263)
T 1xeu_A 182 QK 183 (263)
T ss_dssp EE
T ss_pred Cc
Confidence 54
No 78
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.04 E-value=2.1e-10 Score=115.33 Aligned_cols=95 Identities=17% Similarity=0.107 Sum_probs=54.2
Q ss_pred ceeeEEeecCCCCCCCcCc-cc-cccCccEEEccCCCCCCcC-CC-CCCCCCCCEEEeecCCCcccCccccCCCCCcEEe
Q 017543 270 NTLVVLNLRDCKSLKSLPA-GI-HLEFLKELDLSGCSKLKRL-PD-ISSAANIEEMFLNGTAIEELPSSIECLYKLLHLD 345 (369)
Q Consensus 270 ~~L~~L~L~~n~~l~~lP~-~i-~L~~L~~L~Ls~~~~l~~l-P~-i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L~ 345 (369)
++|+.|+|++| .+..+++ .+ .+++|++|+|++| .+..+ |. +++|++|++|+|++|.|+.+|.. .+++|++|+
T Consensus 21 ~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~ 96 (520)
T 2z7x_B 21 QKTTILNISQN-YISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLD 96 (520)
T ss_dssp TTCSEEECCSS-CCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEE
T ss_pred ccccEEECCCC-cccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEe
Confidence 55666666666 3444442 34 5666666666663 33333 43 66666666666666666666655 566666666
Q ss_pred cccCCCCC-cCCccccCCCCCCCC
Q 017543 346 LEDCKSLK-SLPSGLFLCRNKCRI 368 (369)
Q Consensus 346 Ls~n~~l~-~lP~~i~~L~~L~~L 368 (369)
|++|++.+ .+|..++.+++|++|
T Consensus 97 L~~N~l~~~~~p~~~~~l~~L~~L 120 (520)
T 2z7x_B 97 LSFNAFDALPICKEFGNMSQLKFL 120 (520)
T ss_dssp CCSSCCSSCCCCGGGGGCTTCCEE
T ss_pred ccCCccccccchhhhccCCcceEE
Confidence 66666333 355666666665544
No 79
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.04 E-value=3e-10 Score=112.23 Aligned_cols=120 Identities=23% Similarity=0.365 Sum_probs=93.1
Q ss_pred hhhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccccccCccEEEccCCCCCCcC-CC-CCCCCCCCEEE
Q 017543 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRL-PD-ISSAANIEEMF 322 (369)
Q Consensus 245 aL~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i~L~~L~~L~Ls~~~~l~~l-P~-i~~L~~L~~L~ 322 (369)
.|+.+.+..++.+..++.. .+..+++|+.|+|++| .+..+|....+++|+.|+|++| .+..+ |. +..+++|+.|+
T Consensus 161 ~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 237 (440)
T 3zyj_A 161 SLRRLDLGELKRLSYISEG-AFEGLSNLRYLNLAMC-NLREIPNLTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLW 237 (440)
T ss_dssp TCCEEECCCCTTCCEECTT-TTTTCSSCCEEECTTS-CCSSCCCCTTCSSCCEEECTTS-CCCEECTTTTTTCTTCCEEE
T ss_pred ccCEeCCCCCCCcceeCcc-hhhcccccCeecCCCC-cCccccccCCCcccCEEECCCC-ccCccChhhhccCccCCEEE
Confidence 3444445455555555542 3578999999999999 6889986338999999999995 56666 45 99999999999
Q ss_pred eecCCCccc-CccccCCCCCcEEecccCCCCCcCCcc-ccCCCCCCCC
Q 017543 323 LNGTAIEEL-PSSIECLYKLLHLDLEDCKSLKSLPSG-LFLCRNKCRI 368 (369)
Q Consensus 323 Ls~n~l~~L-P~~i~~L~~L~~L~Ls~n~~l~~lP~~-i~~L~~L~~L 368 (369)
|++|.|+.+ |..++++++|++|+|++|+ +..+|.. +..+++|+.|
T Consensus 238 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L 284 (440)
T 3zyj_A 238 MIQSQIQVIERNAFDNLQSLVEINLAHNN-LTLLPHDLFTPLHHLERI 284 (440)
T ss_dssp CTTCCCCEECTTSSTTCTTCCEEECTTSC-CCCCCTTTTSSCTTCCEE
T ss_pred CCCCceeEEChhhhcCCCCCCEEECCCCC-CCccChhHhccccCCCEE
Confidence 999999976 4568999999999999998 5566654 5667777765
No 80
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.03 E-value=3.1e-10 Score=112.48 Aligned_cols=120 Identities=21% Similarity=0.329 Sum_probs=91.7
Q ss_pred hhhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccccccCccEEEccCCCCCCcC-CC-CCCCCCCCEEE
Q 017543 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRL-PD-ISSAANIEEMF 322 (369)
Q Consensus 245 aL~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i~L~~L~~L~Ls~~~~l~~l-P~-i~~L~~L~~L~ 322 (369)
.|+.+.+..++.+..++.. .+..+++|+.|+|++| .+..+|....+++|+.|+|++| .+..+ |. +.++++|++|+
T Consensus 172 ~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 248 (452)
T 3zyi_A 172 SLMRLDLGELKKLEYISEG-AFEGLFNLKYLNLGMC-NIKDMPNLTPLVGLEELEMSGN-HFPEIRPGSFHGLSSLKKLW 248 (452)
T ss_dssp TCCEEECCCCTTCCEECTT-TTTTCTTCCEEECTTS-CCSSCCCCTTCTTCCEEECTTS-CCSEECGGGGTTCTTCCEEE
T ss_pred cccEEeCCCCCCccccChh-hccCCCCCCEEECCCC-cccccccccccccccEEECcCC-cCcccCcccccCccCCCEEE
Confidence 3444445555556655542 3567899999999999 5888875338999999999995 45555 45 99999999999
Q ss_pred eecCCCccc-CccccCCCCCcEEecccCCCCCcCCcc-ccCCCCCCCC
Q 017543 323 LNGTAIEEL-PSSIECLYKLLHLDLEDCKSLKSLPSG-LFLCRNKCRI 368 (369)
Q Consensus 323 Ls~n~l~~L-P~~i~~L~~L~~L~Ls~n~~l~~lP~~-i~~L~~L~~L 368 (369)
|++|.|..+ |..++.+++|++|+|++|+ +..+|.. +..+++|+.|
T Consensus 249 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L 295 (452)
T 3zyi_A 249 VMNSQVSLIERNAFDGLASLVELNLAHNN-LSSLPHDLFTPLRYLVEL 295 (452)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTSSTTCTTCCEE
T ss_pred eCCCcCceECHHHhcCCCCCCEEECCCCc-CCccChHHhccccCCCEE
Confidence 999999866 5668999999999999998 5666654 5667777765
No 81
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.03 E-value=4e-10 Score=105.54 Aligned_cols=114 Identities=18% Similarity=0.183 Sum_probs=87.1
Q ss_pred ccccCCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCC-cCCC-CCCCCCCCEEEeecCCCccc
Q 017543 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLK-RLPD-ISSAANIEEMFLNGTAIEEL 331 (369)
Q Consensus 255 ~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~-~lP~-i~~L~~L~~L~Ls~n~l~~L 331 (369)
+.+..++....+..+++|+.|++++|......|..+ .+++|++|+|++|...+ .+|. ++.+++|++|+|++|.++.+
T Consensus 111 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 190 (306)
T 2z66_A 111 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 190 (306)
T ss_dssp SEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred CcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCc
Confidence 334555432346788999999999995333445556 89999999999954333 3787 99999999999999999977
Q ss_pred -CccccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543 332 -PSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI 368 (369)
Q Consensus 332 -P~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L 368 (369)
|..++.+++|++|+|++|++.+..+..+..+++|+.|
T Consensus 191 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 228 (306)
T 2z66_A 191 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 228 (306)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEE
T ss_pred CHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEe
Confidence 6778999999999999999444344467778888765
No 82
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.03 E-value=5.5e-10 Score=104.50 Aligned_cols=97 Identities=23% Similarity=0.331 Sum_probs=71.6
Q ss_pred ccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccCccccCCCCCcEE
Q 017543 266 SQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHL 344 (369)
Q Consensus 266 ~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L 344 (369)
+..+++|+.|++++| .+..+|. + .+++|++|+|++ +.+..+|.++.+++|+.|+|++|.++.+ ..++.+++|++|
T Consensus 86 l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L~~-n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L 161 (291)
T 1h6t_A 86 LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLSLEH-NGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTL 161 (291)
T ss_dssp GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEECTT-SCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEE
T ss_pred cccCCCCCEEECCCC-cCCCChh-hccCCCCCEEECCC-CcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEE
Confidence 556777888888877 4666664 5 778888888887 4566666677788888888888888877 467888888888
Q ss_pred ecccCCCCCcCCccccCCCCCCCC
Q 017543 345 DLEDCKSLKSLPSGLFLCRNKCRI 368 (369)
Q Consensus 345 ~Ls~n~~l~~lP~~i~~L~~L~~L 368 (369)
++++|+ +..+|. +..+++|+.|
T Consensus 162 ~L~~N~-l~~~~~-l~~l~~L~~L 183 (291)
T 1h6t_A 162 SLEDNQ-ISDIVP-LAGLTKLQNL 183 (291)
T ss_dssp ECCSSC-CCCCGG-GTTCTTCCEE
T ss_pred EccCCc-cccchh-hcCCCccCEE
Confidence 888887 555655 7777777655
No 83
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.03 E-value=4.2e-10 Score=107.37 Aligned_cols=92 Identities=16% Similarity=0.121 Sum_probs=71.4
Q ss_pred cccCCCCCCCccccceeeEEeecC-CCCCCCcCcc-c-cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCcc
Q 017543 256 IFTKTPNPSFSQHLNTLVVLNLRD-CKSLKSLPAG-I-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEE 330 (369)
Q Consensus 256 ~l~~~p~~~~~~~l~~L~~L~L~~-n~~l~~lP~~-i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~ 330 (369)
.+..+|. ++.+.+|+.|+|++ | .+..+|.. + .|++|+.|+|++| .+..+|. +++|++|++|+|++|+|+.
T Consensus 20 ~l~~ip~---l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 94 (347)
T 2ifg_A 20 ALDSLHH---LPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNALES 94 (347)
T ss_dssp CCTTTTT---SCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSCCSC
T ss_pred CCCccCC---CCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCCccce
Confidence 4666664 67788899999986 6 68888754 5 8899999999984 5666664 7889999999999999998
Q ss_pred cCccccCCCCCcEEecccCCCC
Q 017543 331 LPSSIECLYKLLHLDLEDCKSL 352 (369)
Q Consensus 331 LP~~i~~L~~L~~L~Ls~n~~l 352 (369)
+|..+.....|+.|+|.+|++.
T Consensus 95 ~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 95 LSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp CCSTTTCSCCCCEEECCSSCCC
T ss_pred eCHHHcccCCceEEEeeCCCcc
Confidence 8887654444999999988743
No 84
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.02 E-value=2.6e-10 Score=116.75 Aligned_cols=101 Identities=19% Similarity=0.137 Sum_probs=66.2
Q ss_pred ccccceeeEEeecCCCCCCC--cCccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCccc-CccccCCCC
Q 017543 266 SQHLNTLVVLNLRDCKSLKS--LPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEEL-PSSIECLYK 340 (369)
Q Consensus 266 ~~~l~~L~~L~L~~n~~l~~--lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~~L-P~~i~~L~~ 340 (369)
+..+++|+.|++++|. +.. +|..+ .+++|+.|+|++|...+..|. ++.+++|++|+|++|.+..+ |..++++++
T Consensus 444 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 522 (606)
T 3vq2_A 444 FLGLTSLNTLKMAGNS-FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYS 522 (606)
T ss_dssp TTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTT
T ss_pred hcCCCCCCEEECCCCc-CCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCc
Confidence 4556667777777763 332 56556 677777777777543333344 77777777777777777754 666777777
Q ss_pred CcEEecccCCCCCcCCccccCCC-CCCCC
Q 017543 341 LLHLDLEDCKSLKSLPSGLFLCR-NKCRI 368 (369)
Q Consensus 341 L~~L~Ls~n~~l~~lP~~i~~L~-~L~~L 368 (369)
|++|+|++|+ +..+|..+..++ +|+.|
T Consensus 523 L~~L~l~~N~-l~~~p~~~~~l~~~L~~l 550 (606)
T 3vq2_A 523 LSTLDCSFNR-IETSKGILQHFPKSLAFF 550 (606)
T ss_dssp CCEEECTTSC-CCCEESCGGGSCTTCCEE
T ss_pred CCEEECCCCc-CcccCHhHhhhcccCcEE
Confidence 7777777777 557777766665 35543
No 85
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.02 E-value=2.9e-10 Score=112.17 Aligned_cols=95 Identities=21% Similarity=0.279 Sum_probs=51.2
Q ss_pred ccccceeeEEeecCCCCCCCc-Cccc-cccCccEEEccCCCCCCcCC-C--CCCCCCCCEEEeecCCCccc-Ccc-ccCC
Q 017543 266 SQHLNTLVVLNLRDCKSLKSL-PAGI-HLEFLKELDLSGCSKLKRLP-D--ISSAANIEEMFLNGTAIEEL-PSS-IECL 338 (369)
Q Consensus 266 ~~~l~~L~~L~L~~n~~l~~l-P~~i-~L~~L~~L~Ls~~~~l~~lP-~--i~~L~~L~~L~Ls~n~l~~L-P~~-i~~L 338 (369)
+..+++|++|+|++|. +..+ |..+ .+++|++|+|++|...+.+| . ++.+++|++|+|++|.+..+ |.. ++++
T Consensus 75 ~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l 153 (455)
T 3v47_A 75 FRGLSSLIILKLDYNQ-FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM 153 (455)
T ss_dssp TTTCTTCCEEECTTCT-TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGC
T ss_pred ccccccCCEEeCCCCc-cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCC
Confidence 4455666666666663 3333 4444 56666666666643322222 2 55666666666666666544 433 5566
Q ss_pred CCCcEEecccCCCCCcCCccccC
Q 017543 339 YKLLHLDLEDCKSLKSLPSGLFL 361 (369)
Q Consensus 339 ~~L~~L~Ls~n~~l~~lP~~i~~ 361 (369)
++|++|++++|++.+..|..+..
T Consensus 154 ~~L~~L~L~~n~l~~~~~~~l~~ 176 (455)
T 3v47_A 154 RRFHVLDLTFNKVKSICEEDLLN 176 (455)
T ss_dssp TTCCEEECTTCCBSCCCTTTSGG
T ss_pred CcccEEeCCCCcccccChhhhhc
Confidence 66666666666644444444443
No 86
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.01 E-value=3.3e-10 Score=111.78 Aligned_cols=100 Identities=25% Similarity=0.288 Sum_probs=72.1
Q ss_pred ccccceeeEEeecCCCCCCCc-Cccc-cccCccEEEccCCCCCCcCC-C-CCCCCCCCEEEeecCCCccc-CccccCCCC
Q 017543 266 SQHLNTLVVLNLRDCKSLKSL-PAGI-HLEFLKELDLSGCSKLKRLP-D-ISSAANIEEMFLNGTAIEEL-PSSIECLYK 340 (369)
Q Consensus 266 ~~~l~~L~~L~L~~n~~l~~l-P~~i-~L~~L~~L~Ls~~~~l~~lP-~-i~~L~~L~~L~Ls~n~l~~L-P~~i~~L~~ 340 (369)
+..+++|+.|++++|. +..+ |..+ .+++|++|+|++| .+..++ . ++.+++|++|+|++|.|+.+ |..++.+++
T Consensus 295 ~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 372 (455)
T 3v47_A 295 FSHFTDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPN 372 (455)
T ss_dssp TTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred cccCCCCCEEECCCCc-ccccChhHhcCcccCCEEECCCC-ccCCcChhHhcCcccCCEEECCCCcccccChhhcccccc
Confidence 5677888888888884 5555 4455 7888888888874 455554 4 77888888888888888765 667788888
Q ss_pred CcEEecccCCCCCcCCcc-ccCCCCCCCC
Q 017543 341 LLHLDLEDCKSLKSLPSG-LFLCRNKCRI 368 (369)
Q Consensus 341 L~~L~Ls~n~~l~~lP~~-i~~L~~L~~L 368 (369)
|++|+|++|+ +..+|.. +..+++|+.|
T Consensus 373 L~~L~L~~N~-l~~~~~~~~~~l~~L~~L 400 (455)
T 3v47_A 373 LKELALDTNQ-LKSVPDGIFDRLTSLQKI 400 (455)
T ss_dssp CCEEECCSSC-CSCCCTTTTTTCTTCCEE
T ss_pred ccEEECCCCc-cccCCHhHhccCCcccEE
Confidence 8888888877 5556654 4567777654
No 87
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.01 E-value=8.3e-11 Score=126.00 Aligned_cols=105 Identities=21% Similarity=0.317 Sum_probs=73.9
Q ss_pred CCCCCCcc--ccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCC--cCCC-CCCCC-------CCCEEEeecC
Q 017543 260 TPNPSFSQ--HLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLK--RLPD-ISSAA-------NIEEMFLNGT 326 (369)
Q Consensus 260 ~p~~~~~~--~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~--~lP~-i~~L~-------~L~~L~Ls~n 326 (369)
+|.. ++ .+++|+.|+|++|...+.+|..+ +|++|+.|+|++|..+. .+|. +++|+ +|++|+|++|
T Consensus 481 iP~~--l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N 558 (876)
T 4ecn_A 481 ENEE--LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558 (876)
T ss_dssp TTSC--CCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred CChh--hhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC
Confidence 5544 45 78888888888886677888777 78888888888865344 4664 54443 7777777777
Q ss_pred CCcccCc--cccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543 327 AIEELPS--SIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI 368 (369)
Q Consensus 327 ~l~~LP~--~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L 368 (369)
.+..+|. .+++|++|++|+|++|+ +..|| .+..+++|+.|
T Consensus 559 ~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L~~L~~L 600 (876)
T 4ecn_A 559 NLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGTNVKLTDL 600 (876)
T ss_dssp CCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CCCTTSEESEE
T ss_pred cCCccCChhhhhcCCCCCEEECCCCC-cccch-hhcCCCcceEE
Confidence 7777777 77777777777777776 44777 66666666544
No 88
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.01 E-value=7.9e-10 Score=112.53 Aligned_cols=81 Identities=27% Similarity=0.307 Sum_probs=37.4
Q ss_pred cccceeeEEeecCCCCCCCc-Cccc-cccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccC--ccccCCCCCc
Q 017543 267 QHLNTLVVLNLRDCKSLKSL-PAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELP--SSIECLYKLL 342 (369)
Q Consensus 267 ~~l~~L~~L~L~~n~~l~~l-P~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP--~~i~~L~~L~ 342 (369)
..+++|++|+|++| .+..+ |..+ .+++|++|+|++ +.+..+|.. .+++|++|+|++|.++.+| ..+++|++|+
T Consensus 73 ~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~ 149 (562)
T 3a79_B 73 SFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSH-NRLQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLT 149 (562)
T ss_dssp TTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTT-SCCCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCC
T ss_pred ccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCC-CcCCccCcc-ccccCCEEECCCCCccccCchHhhcccCccc
Confidence 34444555555554 23333 2223 445555555554 334444433 4445555555555544332 3445555555
Q ss_pred EEecccCC
Q 017543 343 HLDLEDCK 350 (369)
Q Consensus 343 ~L~Ls~n~ 350 (369)
+|++++|+
T Consensus 150 ~L~L~~n~ 157 (562)
T 3a79_B 150 FLGLSAAK 157 (562)
T ss_dssp EEEEECSB
T ss_pred EEecCCCc
Confidence 55555444
No 89
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.01 E-value=4.2e-10 Score=116.87 Aligned_cols=84 Identities=24% Similarity=0.257 Sum_probs=58.0
Q ss_pred ccccceeeEEeecCCCCCCCcCcc-c-cccCccEEEccCCCCCCcCC-C-CCCCCCCCEEEeecCCCccc-CccccCCCC
Q 017543 266 SQHLNTLVVLNLRDCKSLKSLPAG-I-HLEFLKELDLSGCSKLKRLP-D-ISSAANIEEMFLNGTAIEEL-PSSIECLYK 340 (369)
Q Consensus 266 ~~~l~~L~~L~L~~n~~l~~lP~~-i-~L~~L~~L~Ls~~~~l~~lP-~-i~~L~~L~~L~Ls~n~l~~L-P~~i~~L~~ 340 (369)
+..+++|++|+|++| .+..+|.. + .+++|++|+|++| .+..+| . +++|++|++|+|++|.+..+ |..++++++
T Consensus 69 ~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 146 (680)
T 1ziw_A 69 CQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 146 (680)
T ss_dssp HHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTT
T ss_pred HhcccCcCEEECCCC-ccCccChhhhccCCCCCEEECCCC-ccCccChhHccccCCCCEEECCCCcccccCchhhccccc
Confidence 456777777777777 46667664 4 6777777777774 455555 3 77777777777777777644 445677777
Q ss_pred CcEEecccCCC
Q 017543 341 LLHLDLEDCKS 351 (369)
Q Consensus 341 L~~L~Ls~n~~ 351 (369)
|++|++++|++
T Consensus 147 L~~L~L~~n~l 157 (680)
T 1ziw_A 147 LQELLLSNNKI 157 (680)
T ss_dssp CCEEECCSSCC
T ss_pred CCEEEccCCcc
Confidence 77777777763
No 90
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.00 E-value=9.4e-11 Score=125.59 Aligned_cols=111 Identities=16% Similarity=0.231 Sum_probs=52.2
Q ss_pred hhhhhcccccCCCCCCCccccceeeEEeecCCCCCC--CcCccc-ccc-------CccEEEccCCCCCCcCCC---CCCC
Q 017543 249 KIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLK--SLPAGI-HLE-------FLKELDLSGCSKLKRLPD---ISSA 315 (369)
Q Consensus 249 L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~--~lP~~i-~L~-------~L~~L~Ls~~~~l~~lP~---i~~L 315 (369)
+.+..|.....+|.. +..+++|+.|+|++|..+. .+|..+ .+. +|+.|+|++| .+..+|. +++|
T Consensus 496 L~Ls~N~l~~~iP~~--l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l~~L 572 (876)
T 4ecn_A 496 VELYNCPNMTQLPDF--LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQKM 572 (876)
T ss_dssp EEEESCTTCCSCCGG--GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHHHTTC
T ss_pred EECcCCCCCccChHH--HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCccCChhhhhcC
Confidence 333333334444422 4455555555555553132 244444 333 5555555542 2334554 4555
Q ss_pred CCCCEEEeecCCCcccCccccCCCCCcEEecccCCCCCcCCccccCCCC
Q 017543 316 ANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRN 364 (369)
Q Consensus 316 ~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~ 364 (369)
++|+.|+|++|.|..+| .++++++|++|+|++|+ +..+|..+..+++
T Consensus 573 ~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~ 619 (876)
T 4ecn_A 573 VKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTD 619 (876)
T ss_dssp TTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSC-CSCCCTTSCEECT
T ss_pred CCCCEEECCCCCcccch-hhcCCCcceEEECcCCc-cccchHHHhhccc
Confidence 55555555555555555 45555555555555554 2355554444444
No 91
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.00 E-value=2e-10 Score=109.95 Aligned_cols=119 Identities=18% Similarity=0.229 Sum_probs=95.7
Q ss_pred hhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCcc-c-cccCccEEEccCCCCCCcCCC---CCCCCCCCE
Q 017543 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAG-I-HLEFLKELDLSGCSKLKRLPD---ISSAANIEE 320 (369)
Q Consensus 246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~-i-~L~~L~~L~Ls~~~~l~~lP~---i~~L~~L~~ 320 (369)
|+.+.... +.+..++. ..+..+++|++|++++| .+..+|.. + .+++|++|+|++ +.+..+|. ++++++|++
T Consensus 78 L~~L~L~~-n~l~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~~~~l~~L~~ 153 (353)
T 2z80_A 78 LQALVLTS-NGINTIEE-DSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLG-NPYKTLGETSLFSHLTKLQI 153 (353)
T ss_dssp CCEEECTT-SCCCEECT-TTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEEECTT-CCCSSSCSSCSCTTCTTCCE
T ss_pred CCEEECCC-CccCccCH-hhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEEECCC-CCCcccCchhhhccCCCCcE
Confidence 44444444 34444432 23678899999999999 58889887 5 899999999999 56778885 889999999
Q ss_pred EEeecC-CCcccC-ccccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543 321 MFLNGT-AIEELP-SSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI 368 (369)
Q Consensus 321 L~Ls~n-~l~~LP-~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L 368 (369)
|++++| .+..+| ..++++++|++|++++|++.+..|..+..+++|++|
T Consensus 154 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 203 (353)
T 2z80_A 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHL 203 (353)
T ss_dssp EEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEE
T ss_pred EECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCee
Confidence 999999 688774 578999999999999999777778999988888765
No 92
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.99 E-value=8.2e-10 Score=106.38 Aligned_cols=113 Identities=20% Similarity=0.233 Sum_probs=92.0
Q ss_pred hcccccCCCCCCCccccceeeEEeecCCCCCCCcCcc-c-cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCC
Q 017543 253 ACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAG-I-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAI 328 (369)
Q Consensus 253 ~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~-i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l 328 (369)
..+.+..++...+...+.+|+.|+|++| .+..+|.. + .+++|++|+|++ +.+..+|. +..|++|++|+|++|.|
T Consensus 47 s~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~i 124 (361)
T 2xot_A 47 SHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSS-NHLHTLDEFLFSDLQALEVLLLYNNHI 124 (361)
T ss_dssp CSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCC-CcCCcCCHHHhCCCcCCCEEECCCCcc
Confidence 3455666665433338999999999999 58888764 5 899999999999 56788875 89999999999999999
Q ss_pred ccc-CccccCCCCCcEEecccCCCCCcCCccc----cCCCCCCCC
Q 017543 329 EEL-PSSIECLYKLLHLDLEDCKSLKSLPSGL----FLCRNKCRI 368 (369)
Q Consensus 329 ~~L-P~~i~~L~~L~~L~Ls~n~~l~~lP~~i----~~L~~L~~L 368 (369)
..+ |..++.|++|++|+|++|+ +..+|..+ ..+++|+.|
T Consensus 125 ~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L 168 (361)
T 2xot_A 125 VVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLL 168 (361)
T ss_dssp CEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEE
T ss_pred cEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEE
Confidence 977 5678999999999999998 78899886 457777665
No 93
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.99 E-value=4.7e-10 Score=119.94 Aligned_cols=121 Identities=18% Similarity=0.140 Sum_probs=84.7
Q ss_pred hhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCc-Cccc-cccCccEEEccCCCCCCcCCC---CCCCCCCCE
Q 017543 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSL-PAGI-HLEFLKELDLSGCSKLKRLPD---ISSAANIEE 320 (369)
Q Consensus 246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~l-P~~i-~L~~L~~L~Ls~~~~l~~lP~---i~~L~~L~~ 320 (369)
|+.+.+..+.....++. ..+.++++|++|+|++|. +..+ |..+ .+++|++|+|++|...+.+|. +++|++|++
T Consensus 50 L~~LdLs~n~~~~~i~~-~~f~~L~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~ 127 (844)
T 3j0a_A 50 LQLLELGSQYTPLTIDK-EAFRNLPNLRILDLGSSK-IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127 (844)
T ss_dssp CSEEEECTTCCCCEECT-TTTSSCTTCCEEECTTCC-CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCE
T ss_pred CeEEeCCCCCCccccCH-HHhcCCCCCCEEECCCCc-CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCE
Confidence 44444444434444422 225778888888888884 5554 6666 888888888888655554553 788888888
Q ss_pred EEeecCCCccc--CccccCCCCCcEEecccCCCCCcCCccccCC--CCCCCC
Q 017543 321 MFLNGTAIEEL--PSSIECLYKLLHLDLEDCKSLKSLPSGLFLC--RNKCRI 368 (369)
Q Consensus 321 L~Ls~n~l~~L--P~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L--~~L~~L 368 (369)
|+|++|.+..+ |..+++|++|++|+|++|.+.+..|..+..+ ++|+.|
T Consensus 128 L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L 179 (844)
T 3j0a_A 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF 179 (844)
T ss_dssp EEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCC
T ss_pred EECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceE
Confidence 88888888755 3468888888888888888667777777665 566554
No 94
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.99 E-value=5.1e-12 Score=111.44 Aligned_cols=89 Identities=19% Similarity=0.217 Sum_probs=45.9
Q ss_pred ccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccCc--cccCCCCCc
Q 017543 266 SQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPS--SIECLYKLL 342 (369)
Q Consensus 266 ~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP~--~i~~L~~L~ 342 (369)
+..+++|+.|++++| .+..+|..+ .+++|++|+|++ +.+..+|.++.+++|++|+|++|.|..+|. .++.+++|+
T Consensus 66 ~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~-N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~ 143 (198)
T 1ds9_A 66 LSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISY-NQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLE 143 (198)
T ss_dssp HHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEE-EECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCS
T ss_pred cccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcC-CcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCC
Confidence 444555555555555 344555444 445555555555 234444444455555555555555555443 455555555
Q ss_pred EEecccCCCCCcCC
Q 017543 343 HLDLEDCKSLKSLP 356 (369)
Q Consensus 343 ~L~Ls~n~~l~~lP 356 (369)
+|++++|++.+.+|
T Consensus 144 ~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 144 DLLLAGNPLYNDYK 157 (198)
T ss_dssp EEEECSCHHHHHHH
T ss_pred EEEecCCccccccc
Confidence 55555555333333
No 95
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.99 E-value=4.1e-11 Score=113.37 Aligned_cols=119 Identities=19% Similarity=0.144 Sum_probs=93.7
Q ss_pred hhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccccccCccEEEccCCCCCCcCCC-CCCCCCCCEEEee
Q 017543 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLN 324 (369)
Q Consensus 246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls 324 (369)
|+.+.... +.+...+...+...+++|+.|+|++| .+..+|....+++|+.|+|++ +.+..+|. +..+++|++|+|+
T Consensus 146 L~~L~Ls~-N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~L~ 222 (317)
T 3o53_A 146 VQYLDLKL-NEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQVVFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLR 222 (317)
T ss_dssp EEEEECTT-SCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECCCCCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECT
T ss_pred CCEEECCC-CCCCcccHHHHhhccCcCCEEECCCC-cCcccccccccccCCEEECCC-CcCCcchhhhcccCcccEEECc
Confidence 33343333 33444333333456899999999999 588887655899999999999 66888886 9999999999999
Q ss_pred cCCCcccCccccCCCCCcEEecccCCCC-CcCCccccCCCCCCC
Q 017543 325 GTAIEELPSSIECLYKLLHLDLEDCKSL-KSLPSGLFLCRNKCR 367 (369)
Q Consensus 325 ~n~l~~LP~~i~~L~~L~~L~Ls~n~~l-~~lP~~i~~L~~L~~ 367 (369)
+|.|+.+|..++.+++|++|+|++|++. +.+|..+..+++|+.
T Consensus 223 ~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~ 266 (317)
T 3o53_A 223 NNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQT 266 (317)
T ss_dssp TSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHH
T ss_pred CCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceE
Confidence 9999999999999999999999999965 577777777665543
No 96
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.99 E-value=2.1e-10 Score=115.86 Aligned_cols=119 Identities=19% Similarity=0.236 Sum_probs=86.9
Q ss_pred hhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCcc-c-cccCccEEEccCCCCCCc--CCC-CCCCCCCCE
Q 017543 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAG-I-HLEFLKELDLSGCSKLKR--LPD-ISSAANIEE 320 (369)
Q Consensus 246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~-i-~L~~L~~L~Ls~~~~l~~--lP~-i~~L~~L~~ 320 (369)
|+.+....+ .+..++. ..+..+++|++|+|++| .+..+|.. + .+++|++|+|++| .+.. +|. ++++++|++
T Consensus 52 L~~L~Ls~n-~i~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~ 127 (549)
T 2z81_A 52 LQVLILKSS-RINTIEG-DAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQT 127 (549)
T ss_dssp CCEEECTTS-CCCEECT-TTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEECTTC-CCSSSCSSCSCTTCTTCCE
T ss_pred ccEEECCCC-CcCccCh-hhccccccCCEEECCCC-ccCccCHHHhccCCCCcEEECCCC-cccccchhhhhhccCCccE
Confidence 444444443 3444432 22567888899999888 47777765 5 8888999999884 4553 455 888889999
Q ss_pred EEeecCC-CcccC-ccccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543 321 MFLNGTA-IEELP-SSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI 368 (369)
Q Consensus 321 L~Ls~n~-l~~LP-~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L 368 (369)
|+|++|. +..+| ..++++++|++|++++|.+.+.+|..+..+++|++|
T Consensus 128 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 177 (549)
T 2z81_A 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL 177 (549)
T ss_dssp EEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEE
T ss_pred EECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceE
Confidence 9998886 66777 468888899999999888777788888888777655
No 97
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.98 E-value=1.8e-10 Score=104.19 Aligned_cols=121 Identities=14% Similarity=0.092 Sum_probs=93.7
Q ss_pred hhhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCcc---EEEccCCCCCCcCCC--CCCCCCC
Q 017543 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLK---ELDLSGCSKLKRLPD--ISSAANI 318 (369)
Q Consensus 245 aL~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~---~L~Ls~~~~l~~lP~--i~~L~~L 318 (369)
.|+.+....|+.+..++.. .+..+++|+.|++++| .+..+|. + .+.+|+ +|++++|..+..+|. +..+++|
T Consensus 81 ~L~~L~l~~~n~l~~i~~~-~f~~l~~L~~L~l~~n-~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L 157 (239)
T 2xwt_C 81 KVTHIEIRNTRNLTYIDPD-ALKELPLLKFLGIFNT-GLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE 157 (239)
T ss_dssp TCCEEEEEEETTCCEECTT-SEECCTTCCEEEEEEE-CCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSS
T ss_pred CCcEEECCCCCCeeEcCHH-HhCCCCCCCEEeCCCC-CCccccc-cccccccccccEEECCCCcchhhcCcccccchhcc
Confidence 3444545454667766643 3567899999999999 5888887 6 777777 999999647888885 8899999
Q ss_pred C-EEEeecCCCcccCccccCCCCCcEEecccCCCCCcCCc-cccCC-CCCCCC
Q 017543 319 E-EMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPS-GLFLC-RNKCRI 368 (369)
Q Consensus 319 ~-~L~Ls~n~l~~LP~~i~~L~~L~~L~Ls~n~~l~~lP~-~i~~L-~~L~~L 368 (369)
+ +|+|++|.++.+|..+....+|+.|+|++|+.+..+|. .+..+ ++|+.|
T Consensus 158 ~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L 210 (239)
T 2xwt_C 158 TLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLL 210 (239)
T ss_dssp EEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEE
T ss_pred eeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEE
Confidence 9 99999999999998876668999999999954667764 46667 777665
No 98
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.98 E-value=6.5e-10 Score=110.60 Aligned_cols=120 Identities=24% Similarity=0.306 Sum_probs=86.4
Q ss_pred hhhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCC-CCCCCCCCEE
Q 017543 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD-ISSAANIEEM 321 (369)
Q Consensus 245 aL~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L 321 (369)
.|+.+.+..+ .+..++. ..+..+++|+.|+|++| .+..+|... .+++|++|+|++|......|. +.++++|++|
T Consensus 57 ~L~~L~L~~n-~i~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 133 (477)
T 2id5_A 57 HLEELELNEN-IVSAVEP-GAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL 133 (477)
T ss_dssp TCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCEEECCCC-ccCEeCh-hhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEE
Confidence 3444444443 3343322 22678889999999998 578888764 789999999998543333444 8889999999
Q ss_pred EeecCCCccc-CccccCCCCCcEEecccCCCCCcCCc-cccCCCCCCCC
Q 017543 322 FLNGTAIEEL-PSSIECLYKLLHLDLEDCKSLKSLPS-GLFLCRNKCRI 368 (369)
Q Consensus 322 ~Ls~n~l~~L-P~~i~~L~~L~~L~Ls~n~~l~~lP~-~i~~L~~L~~L 368 (369)
+|++|.+..+ |..++.+++|++|+|++|+ +..+|. .+..+++|+.|
T Consensus 134 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L 181 (477)
T 2id5_A 134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVL 181 (477)
T ss_dssp EECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEE
T ss_pred ECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhcccCCCcEE
Confidence 9999988866 4568889999999999988 556664 47777777765
No 99
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.97 E-value=7.6e-10 Score=104.81 Aligned_cols=88 Identities=19% Similarity=0.308 Sum_probs=63.1
Q ss_pred ceeeEEeecCCCCCCCc-Cccc-cccCccEEEccCCCCCCcCC-C-CCCCCCCCEEEeecCCCcccCccccCCCCCcEEe
Q 017543 270 NTLVVLNLRDCKSLKSL-PAGI-HLEFLKELDLSGCSKLKRLP-D-ISSAANIEEMFLNGTAIEELPSSIECLYKLLHLD 345 (369)
Q Consensus 270 ~~L~~L~L~~n~~l~~l-P~~i-~L~~L~~L~Ls~~~~l~~lP-~-i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L~ 345 (369)
++|+.|++++|. +..+ |..+ .+++|+.|+|++| .+..++ . ++.+++|++|+|++|.|..+|.+++.+++|++|+
T Consensus 192 ~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~ 269 (330)
T 1xku_A 192 PSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVY 269 (330)
T ss_dssp TTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEE
T ss_pred ccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCC-cCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEE
Confidence 667777777773 5555 4455 7788888888874 455554 3 7778888888888888888888888888888888
Q ss_pred cccCCCCCcCCcccc
Q 017543 346 LEDCKSLKSLPSGLF 360 (369)
Q Consensus 346 Ls~n~~l~~lP~~i~ 360 (369)
|++|+ +..+|...+
T Consensus 270 l~~N~-i~~~~~~~f 283 (330)
T 1xku_A 270 LHNNN-ISAIGSNDF 283 (330)
T ss_dssp CCSSC-CCCCCTTSS
T ss_pred CCCCc-CCccChhhc
Confidence 88877 666665443
No 100
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.97 E-value=1.2e-09 Score=110.40 Aligned_cols=120 Identities=18% Similarity=0.212 Sum_probs=87.5
Q ss_pred hhhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcC-ccc-cccCccEEEccCCCCCCcCC-C-CCCCCCCCE
Q 017543 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLP-AGI-HLEFLKELDLSGCSKLKRLP-D-ISSAANIEE 320 (369)
Q Consensus 245 aL~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP-~~i-~L~~L~~L~Ls~~~~l~~lP-~-i~~L~~L~~ 320 (369)
.++.+....+. +..++. ..+..+++|++|++++| .+..++ ..+ .+++|++|+|++| .+..+| . +++|++|++
T Consensus 27 ~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~ 102 (549)
T 2z81_A 27 AMKSLDLSFNK-ITYIGH-GDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKY 102 (549)
T ss_dssp TCCEEECCSSC-CCEECS-STTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCE
T ss_pred CccEEECcCCc-cCccCh-hhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcE
Confidence 44445444433 444432 22577888999999988 466665 456 8889999999984 566666 4 888999999
Q ss_pred EEeecCCCcc--cCccccCCCCCcEEecccCCCCCcCC-ccccCCCCCCCC
Q 017543 321 MFLNGTAIEE--LPSSIECLYKLLHLDLEDCKSLKSLP-SGLFLCRNKCRI 368 (369)
Q Consensus 321 L~Ls~n~l~~--LP~~i~~L~~L~~L~Ls~n~~l~~lP-~~i~~L~~L~~L 368 (369)
|+|++|.++. +|..++++++|++|++++|+.++.+| ..+..+++|++|
T Consensus 103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 153 (549)
T 2z81_A 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNEL 153 (549)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred EECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCee
Confidence 9999998884 46778889999999999888777777 467777777655
No 101
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.97 E-value=1.2e-09 Score=103.78 Aligned_cols=97 Identities=22% Similarity=0.344 Sum_probs=55.5
Q ss_pred ccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccCccccCCCCCcEE
Q 017543 266 SQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHL 344 (369)
Q Consensus 266 ~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L 344 (369)
+..+++|++|++++| .+..+|. + .+++|++|+|++ +.+..+|.++++++|++|+|++|.+..+|. +..+++|++|
T Consensus 62 ~~~~~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~L~~-n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L 137 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGT-NKITDISALQNLTNLRELYLNEDNISDISP-LANLTKMYSL 137 (347)
T ss_dssp GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCS-SCCCCCGGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEE
T ss_pred hhhcCCccEEEccCC-ccccchh-hhcCCcCCEEEccC-CcccCchHHcCCCcCCEEECcCCcccCchh-hccCCceeEE
Confidence 445666666666666 3555555 4 566666666666 345555556666666666666666666555 5566666666
Q ss_pred ecccCCCCCcCCccccCCCCCCC
Q 017543 345 DLEDCKSLKSLPSGLFLCRNKCR 367 (369)
Q Consensus 345 ~Ls~n~~l~~lP~~i~~L~~L~~ 367 (369)
++++|..+..+|. +..+++|+.
T Consensus 138 ~l~~n~~~~~~~~-~~~l~~L~~ 159 (347)
T 4fmz_A 138 NLGANHNLSDLSP-LSNMTGLNY 159 (347)
T ss_dssp ECTTCTTCCCCGG-GTTCTTCCE
T ss_pred ECCCCCCcccccc-hhhCCCCcE
Confidence 6666543443333 444444443
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.97 E-value=1.5e-09 Score=112.02 Aligned_cols=97 Identities=23% Similarity=0.333 Sum_probs=74.7
Q ss_pred ccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccCccccCCCCCcEE
Q 017543 266 SQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHL 344 (369)
Q Consensus 266 ~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L 344 (369)
+..+++|+.|+|++| .+..+| .+ .+++|+.|+|++ +.+..+|.++.|++|+.|+|++|.|..+ ..++.|++|+.|
T Consensus 83 l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~-N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L 158 (605)
T 1m9s_A 83 LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLSLEH-NGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTL 158 (605)
T ss_dssp GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEECTT-SCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEE
T ss_pred hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEEecC-CCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEE
Confidence 567788888888888 477766 45 788888888887 4566676688888888888888888877 568888888888
Q ss_pred ecccCCCCCcCCccccCCCCCCCC
Q 017543 345 DLEDCKSLKSLPSGLFLCRNKCRI 368 (369)
Q Consensus 345 ~Ls~n~~l~~lP~~i~~L~~L~~L 368 (369)
+|++|. +..+|. +..|++|++|
T Consensus 159 ~Ls~N~-l~~~~~-l~~l~~L~~L 180 (605)
T 1m9s_A 159 SLEDNQ-ISDIVP-LAGLTKLQNL 180 (605)
T ss_dssp ECCSSC-CCCCGG-GTTCTTCCEE
T ss_pred ECcCCc-CCCchh-hccCCCCCEE
Confidence 888888 444444 7777777765
No 103
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.97 E-value=8.2e-10 Score=111.86 Aligned_cols=104 Identities=19% Similarity=0.212 Sum_probs=78.1
Q ss_pred CccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCC-CcCCC-CCCCCCCCEEEeecCCCccc-CccccCCCC
Q 017543 265 FSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKL-KRLPD-ISSAANIEEMFLNGTAIEEL-PSSIECLYK 340 (369)
Q Consensus 265 ~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l-~~lP~-i~~L~~L~~L~Ls~n~l~~L-P~~i~~L~~ 340 (369)
.+..+++|+.|++++|...+..|..+ .+++|++|+|++|... +.+|. ++.+++|++|+|++|.++.+ |..++++++
T Consensus 416 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 495 (570)
T 2z63_A 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495 (570)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccC
Confidence 35677888888888885434455566 7888888888885543 35786 88888889999988888866 777888888
Q ss_pred CcEEecccCCCCCcCCccccCCCCCCCC
Q 017543 341 LLHLDLEDCKSLKSLPSGLFLCRNKCRI 368 (369)
Q Consensus 341 L~~L~Ls~n~~l~~lP~~i~~L~~L~~L 368 (369)
|++|+|++|++.+..|..+..+++|+.|
T Consensus 496 L~~L~l~~n~l~~~~~~~~~~l~~L~~L 523 (570)
T 2z63_A 496 LQVLNMASNQLKSVPDGIFDRLTSLQKI 523 (570)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CCEEeCCCCcCCCCCHHHhhcccCCcEE
Confidence 9999998888554445557777777765
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.95 E-value=1.1e-09 Score=113.10 Aligned_cols=113 Identities=20% Similarity=0.272 Sum_probs=91.9
Q ss_pred hhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCCCCCCCCCCEEEee
Q 017543 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLN 324 (369)
Q Consensus 246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls 324 (369)
|+.+.+.. +.+..++ .+..+++|+.|+|++| .+..+|. + .|++|+.|+|++ +.+..++.++.|++|+.|+|+
T Consensus 89 L~~L~Ls~-N~l~~l~---~l~~l~~L~~L~Ls~N-~l~~l~~-l~~l~~L~~L~Ls~-N~l~~l~~l~~l~~L~~L~Ls 161 (605)
T 1m9s_A 89 LGWLFLDE-NKIKDLS---SLKDLKKLKSLSLEHN-GISDING-LVHLPQLESLYLGN-NKITDITVLSRLTKLDTLSLE 161 (605)
T ss_dssp CCEEECCS-SCCCCCT---TSTTCTTCCEEECTTS-CCCCCGG-GGGCTTCSEEECCS-SCCCCCGGGGSCTTCSEEECC
T ss_pred CCEEECcC-CCCCCCh---hhccCCCCCEEEecCC-CCCCCcc-ccCCCccCEEECCC-CccCCchhhcccCCCCEEECc
Confidence 33343333 3455554 2678999999999999 5787764 6 899999999999 567777669999999999999
Q ss_pred cCCCcccCccccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543 325 GTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI 368 (369)
Q Consensus 325 ~n~l~~LP~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L 368 (369)
+|.|..++. ++.|++|++|+|++|+ +..+| .+..|++|+.|
T Consensus 162 ~N~l~~~~~-l~~l~~L~~L~Ls~N~-i~~l~-~l~~l~~L~~L 202 (605)
T 1m9s_A 162 DNQISDIVP-LAGLTKLQNLYLSKNH-ISDLR-ALAGLKNLDVL 202 (605)
T ss_dssp SSCCCCCGG-GTTCTTCCEEECCSSC-CCBCG-GGTTCTTCSEE
T ss_pred CCcCCCchh-hccCCCCCEEECcCCC-CCCCh-HHccCCCCCEE
Confidence 999998877 9999999999999998 66775 58888888765
No 105
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.95 E-value=1.1e-09 Score=116.99 Aligned_cols=122 Identities=18% Similarity=0.138 Sum_probs=93.2
Q ss_pred hhhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCc-Cccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEE
Q 017543 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSL-PAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEM 321 (369)
Q Consensus 245 aL~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~l-P~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L 321 (369)
.++.+.+.. +.+..++. ..+..+++|++|+|++|..+..+ |..+ ++++|++|+|++|......|. +++|++|++|
T Consensus 25 ~l~~LdLs~-N~i~~i~~-~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 25 TTERLLLSF-NYIRTVTA-SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp TCCEEEEES-CCCCEECS-SSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CcCEEECCC-CcCCccCh-hHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 444454444 44454432 23678999999999999667777 5566 899999999999654444476 9999999999
Q ss_pred EeecCCCcc-cCcc--ccCCCCCcEEecccCCCCCcCC-ccccCCCCCCCC
Q 017543 322 FLNGTAIEE-LPSS--IECLYKLLHLDLEDCKSLKSLP-SGLFLCRNKCRI 368 (369)
Q Consensus 322 ~Ls~n~l~~-LP~~--i~~L~~L~~L~Ls~n~~l~~lP-~~i~~L~~L~~L 368 (369)
+|++|.+.. +|.. +++|++|++|+|++|.+.+..| ..+.+|++|+.|
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L 153 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSI 153 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEE
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEE
Confidence 999999984 6665 8999999999999998555434 578889988876
No 106
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.94 E-value=2.6e-10 Score=107.32 Aligned_cols=98 Identities=18% Similarity=0.186 Sum_probs=73.3
Q ss_pred ccccceeeEEeecCCCCCCCcCcc----c-cccCccEEEccCCCCCCcCCC-CCCC---CCCCEEEeecCCCcccCcccc
Q 017543 266 SQHLNTLVVLNLRDCKSLKSLPAG----I-HLEFLKELDLSGCSKLKRLPD-ISSA---ANIEEMFLNGTAIEELPSSIE 336 (369)
Q Consensus 266 ~~~l~~L~~L~L~~n~~l~~lP~~----i-~L~~L~~L~Ls~~~~l~~lP~-i~~L---~~L~~L~Ls~n~l~~LP~~i~ 336 (369)
...+++|++|+|++| .+..+|.. + .+++|++|+|++|.....+|. ++.+ ++|++|+|++|.|+.+|..+.
T Consensus 193 ~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~ 271 (310)
T 4glp_A 193 PHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP 271 (310)
T ss_dssp TTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC
T ss_pred hhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc
Confidence 456778888888888 46666653 3 678999999998544333475 6666 689999999999999998875
Q ss_pred CCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543 337 CLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI 368 (369)
Q Consensus 337 ~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L 368 (369)
++|++|+|++|+ +..+|. +..+++|+.|
T Consensus 272 --~~L~~L~Ls~N~-l~~~~~-~~~l~~L~~L 299 (310)
T 4glp_A 272 --AKLRVLDLSSNR-LNRAPQ-PDELPEVDNL 299 (310)
T ss_dssp --SCCSCEECCSCC-CCSCCC-TTSCCCCSCE
T ss_pred --CCCCEEECCCCc-CCCCch-hhhCCCccEE
Confidence 789999999988 566665 5666777665
No 107
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.94 E-value=1.2e-09 Score=108.54 Aligned_cols=119 Identities=18% Similarity=0.175 Sum_probs=88.8
Q ss_pred hhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCc-Cccc-cccCccEEEccCCCCCCcCC-C-CCCCCCCCEE
Q 017543 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSL-PAGI-HLEFLKELDLSGCSKLKRLP-D-ISSAANIEEM 321 (369)
Q Consensus 246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~l-P~~i-~L~~L~~L~Ls~~~~l~~lP-~-i~~L~~L~~L 321 (369)
|+.+.+.. +.+..+|.. .+..+++|+.|+|++|. +..+ |..+ .+++|+.|+|++| .+..++ . ++.+++|+.|
T Consensus 82 L~~L~L~~-n~l~~~~~~-~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L 157 (477)
T 2id5_A 82 LRTLGLRS-NRLKLIPLG-VFTGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQL 157 (477)
T ss_dssp CCEEECCS-SCCCSCCTT-SSTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTTCTTCCEE
T ss_pred CCEEECCC-CcCCccCcc-cccCCCCCCEEECCCCc-cccCChhHccccccCCEEECCCC-ccceeChhhccCCCCCCEE
Confidence 44343433 446666643 35678999999999994 5555 4455 8999999999984 455554 4 8899999999
Q ss_pred EeecCCCcccCcc-ccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543 322 FLNGTAIEELPSS-IECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI 368 (369)
Q Consensus 322 ~Ls~n~l~~LP~~-i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L 368 (369)
+|++|.++.+|.. ++++++|+.|+|++|.+.+..|..+..+++|+.|
T Consensus 158 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 205 (477)
T 2id5_A 158 TLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVL 205 (477)
T ss_dssp EEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEE
T ss_pred ECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCccccee
Confidence 9999999988864 7899999999999998555555577778887765
No 108
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.94 E-value=6.7e-10 Score=104.71 Aligned_cols=101 Identities=20% Similarity=0.207 Sum_probs=54.1
Q ss_pred hhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccc-cc-----cCccEEEccCCCCCCcCC-C-CCCCCCCC
Q 017543 248 EKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HL-----EFLKELDLSGCSKLKRLP-D-ISSAANIE 319 (369)
Q Consensus 248 ~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L-----~~L~~L~Ls~~~~l~~lP-~-i~~L~~L~ 319 (369)
.+....+.....+|...++..+++|+.|+|++| .+..+|..+ .+ ++|++|+|++ +.+..+| . ++++++|+
T Consensus 99 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~-N~l~~~~~~~~~~l~~L~ 176 (312)
T 1wwl_A 99 ELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQ-AHSLNFSCEQVRVFPALS 176 (312)
T ss_dssp EEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEES-CSCCCCCTTTCCCCSSCC
T ss_pred EEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeC-CCCccchHHHhccCCCCC
Confidence 333333333334444322356666777777766 355555555 44 6666666666 3344444 3 66666666
Q ss_pred EEEeecCCCcc---cCccc--cCCCCCcEEecccCC
Q 017543 320 EMFLNGTAIEE---LPSSI--ECLYKLLHLDLEDCK 350 (369)
Q Consensus 320 ~L~Ls~n~l~~---LP~~i--~~L~~L~~L~Ls~n~ 350 (369)
+|+|++|.+.. +|..+ +++++|++|+|++|+
T Consensus 177 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~ 212 (312)
T 1wwl_A 177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG 212 (312)
T ss_dssp EEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC
T ss_pred EEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc
Confidence 66666665431 33344 555555555555555
No 109
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.93 E-value=1.8e-09 Score=110.88 Aligned_cols=46 Identities=17% Similarity=0.248 Sum_probs=25.3
Q ss_pred cccCCCCCCCccccceeeEEeecCCCCCCCcCc-cc-cccCccEEEccCC
Q 017543 256 IFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPA-GI-HLEFLKELDLSGC 303 (369)
Q Consensus 256 ~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~-~i-~L~~L~~L~Ls~~ 303 (369)
.+..+|.. .+..+++|+.|+|++|. +..+++ .+ .+++|++|+|++|
T Consensus 134 ~l~~l~~~-~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N 181 (597)
T 3oja_B 134 DLSSLPRG-IFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSN 181 (597)
T ss_dssp CCCCCCTT-TTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTS
T ss_pred CCCCCCHH-HhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCC
Confidence 34444432 23556666666666663 444443 34 6666666666663
No 110
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.92 E-value=9.4e-10 Score=106.62 Aligned_cols=98 Identities=15% Similarity=0.137 Sum_probs=73.8
Q ss_pred ccccceeeEEeecCCCCCCCc-Cccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCcccCccccCCCCCc
Q 017543 266 SQHLNTLVVLNLRDCKSLKSL-PAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSSIECLYKLL 342 (369)
Q Consensus 266 ~~~l~~L~~L~L~~n~~l~~l-P~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~ 342 (369)
+..+++|+.|++++|. +..+ |..+ .+++|+.|+|++ +.+..+|. ++.+++|++|+|++|.+..+|..++.+++|+
T Consensus 244 l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~ 321 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLE 321 (390)
T ss_dssp GGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECCS-SCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCS
T ss_pred HcCCCCccEEECCCCc-CCCcChhHccccccCCEEECCC-CcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCC
Confidence 5667788888888884 5544 5556 788888888887 56777776 7778888888888888888888888888888
Q ss_pred EEecccCCCCCcCCccccCCCCCCCC
Q 017543 343 HLDLEDCKSLKSLPSGLFLCRNKCRI 368 (369)
Q Consensus 343 ~L~Ls~n~~l~~lP~~i~~L~~L~~L 368 (369)
+|+|++|+ +..+| +..+++|+.|
T Consensus 322 ~L~L~~N~-i~~~~--~~~~~~L~~L 344 (390)
T 3o6n_A 322 NLYLDHNS-IVTLK--LSTHHTLKNL 344 (390)
T ss_dssp EEECCSSC-CCCCC--CCTTCCCSEE
T ss_pred EEECCCCc-cceeC--chhhccCCEE
Confidence 88888887 56665 5556666554
No 111
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.92 E-value=1.4e-09 Score=111.21 Aligned_cols=99 Identities=15% Similarity=0.087 Sum_probs=62.1
Q ss_pred ccccceeeEEeecCCCCCCCc-Cccc-cccCccEEEccCCCCCCcC-CC-CCCCCCCCEEEeecCCCcccC-ccccCCCC
Q 017543 266 SQHLNTLVVLNLRDCKSLKSL-PAGI-HLEFLKELDLSGCSKLKRL-PD-ISSAANIEEMFLNGTAIEELP-SSIECLYK 340 (369)
Q Consensus 266 ~~~l~~L~~L~L~~n~~l~~l-P~~i-~L~~L~~L~Ls~~~~l~~l-P~-i~~L~~L~~L~Ls~n~l~~LP-~~i~~L~~ 340 (369)
+..+++|++|+|++|. +..+ |..+ .+++|++|+|++ +.+..+ |. ++++++|++|+|++|.+..++ ..+..+++
T Consensus 77 ~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~-n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 154 (606)
T 3t6q_A 77 FQSQHRLDTLVLTANP-LIFMAETALSGPKALKHLFFIQ-TGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEK 154 (606)
T ss_dssp TTTCTTCCEEECTTCC-CSEECTTTTSSCTTCCEEECTT-SCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTT
T ss_pred ccCccccCeeeCCCCc-ccccChhhhcccccccEeeccc-cCcccCCcchhccCCcccEEECCCCcccccCcccccCCcc
Confidence 4567777777777773 4443 4455 677777777776 345555 33 677777777777777776552 22333777
Q ss_pred CcEEecccCCCCCcCCccccCCCCCC
Q 017543 341 LLHLDLEDCKSLKSLPSGLFLCRNKC 366 (369)
Q Consensus 341 L~~L~Ls~n~~l~~lP~~i~~L~~L~ 366 (369)
|++|++++|++.+..|..+..+++|+
T Consensus 155 L~~L~L~~n~l~~~~~~~~~~l~~L~ 180 (606)
T 3t6q_A 155 LKVLDFQNNAIHYLSKEDMSSLQQAT 180 (606)
T ss_dssp CCEEECCSSCCCEECHHHHHTTTTCC
T ss_pred cCEEEcccCcccccChhhhhhhcccc
Confidence 77777777764444455566666665
No 112
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.91 E-value=1.3e-09 Score=104.40 Aligned_cols=112 Identities=24% Similarity=0.216 Sum_probs=90.0
Q ss_pred hcccccCCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCc
Q 017543 253 ACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIE 329 (369)
Q Consensus 253 ~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~ 329 (369)
.++.+..++...|......++.|+|++| .+..+|..+ ...+|+.|++++|+.++.+|. +..+++|++|+|++|+|+
T Consensus 137 ~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 137 DNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp SCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred cccccccccccchhhcchhhhhhccccc-cccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence 3445555665555444567899999999 689999888 888999999999899999995 799999999999999999
Q ss_pred ccCccccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543 330 ELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI 368 (369)
Q Consensus 330 ~LP~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L 368 (369)
.||.. .+.+|+.|.+.+|..++.+|. +.+|++|+.+
T Consensus 216 ~lp~~--~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l 251 (350)
T 4ay9_X 216 SLPSY--GLENLKKLRARSTYNLKKLPT-LEKLVALMEA 251 (350)
T ss_dssp CCCSS--SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEE
T ss_pred ccChh--hhccchHhhhccCCCcCcCCC-chhCcChhhC
Confidence 99974 366777777777777899994 6667777654
No 113
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.91 E-value=2.2e-09 Score=106.94 Aligned_cols=100 Identities=14% Similarity=0.128 Sum_probs=75.2
Q ss_pred cccCCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccCcc
Q 017543 256 IFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSS 334 (369)
Q Consensus 256 ~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP~~ 334 (369)
.+..+| . +..+++|++|++++| .+..+| + .+++|++|+|++ +.+..+| ++++++|++|+|++|.++.+|
T Consensus 53 ~l~~~~-~--l~~l~~L~~L~Ls~n-~l~~~~--~~~l~~L~~L~Ls~-N~l~~~~-~~~l~~L~~L~L~~N~l~~l~-- 122 (457)
T 3bz5_A 53 SITDMT-G--IEKLTGLTKLICTSN-NITTLD--LSQNTNLTYLACDS-NKLTNLD-VTPLTKLTYLNCDTNKLTKLD-- 122 (457)
T ss_dssp CCCCCT-T--GGGCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCS-SCCSCCC-CTTCTTCCEEECCSSCCSCCC--
T ss_pred CcccCh-h--hcccCCCCEEEccCC-cCCeEc--cccCCCCCEEECcC-CCCceee-cCCCCcCCEEECCCCcCCeec--
Confidence 445554 2 567888888888888 477775 6 788888888888 4466665 788888888888888888876
Q ss_pred ccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543 335 IECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI 368 (369)
Q Consensus 335 i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L 368 (369)
++++++|++|++++|+ +..+| +..+++|+.|
T Consensus 123 ~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L 153 (457)
T 3bz5_A 123 VSQNPLLTYLNCARNT-LTEID--VSHNTQLTEL 153 (457)
T ss_dssp CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEE
T ss_pred CCCCCcCCEEECCCCc-cceec--cccCCcCCEE
Confidence 8888888888888887 55565 6666666554
No 114
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.91 E-value=6.9e-12 Score=110.59 Aligned_cols=98 Identities=20% Similarity=0.270 Sum_probs=84.9
Q ss_pred ccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCcccCccccCCCCCcE
Q 017543 266 SQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSSIECLYKLLH 343 (369)
Q Consensus 266 ~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~ 343 (369)
+..+++|+.|++++| .+..+| .+ .+++|++|+|++ +.+..+|. ++.+++|++|+|++|.|+.+| .++.+++|++
T Consensus 44 ~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~-n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~ 119 (198)
T 1ds9_A 44 LSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGR-NLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRV 119 (198)
T ss_dssp HHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEE-EEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSE
T ss_pred HhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCC-CCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCE
Confidence 567889999999999 588888 77 899999999998 56778998 778899999999999999988 6899999999
Q ss_pred EecccCCCCCcCCc--cccCCCCCCCC
Q 017543 344 LDLEDCKSLKSLPS--GLFLCRNKCRI 368 (369)
Q Consensus 344 L~Ls~n~~l~~lP~--~i~~L~~L~~L 368 (369)
|++++|+ +..+|. .+..+++|+.|
T Consensus 120 L~l~~N~-i~~~~~~~~l~~l~~L~~L 145 (198)
T 1ds9_A 120 LYMSNNK-ITNWGEIDKLAALDKLEDL 145 (198)
T ss_dssp EEESEEE-CCCHHHHHHHTTTTTCSEE
T ss_pred EECCCCc-CCchhHHHHHhcCCCCCEE
Confidence 9999998 666665 67788888765
No 115
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.90 E-value=2e-09 Score=108.07 Aligned_cols=98 Identities=19% Similarity=0.271 Sum_probs=65.5
Q ss_pred cccceeeEEeecCCCCCCC-cCcc-c-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCcccCccccCCCCCc
Q 017543 267 QHLNTLVVLNLRDCKSLKS-LPAG-I-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSSIECLYKLL 342 (369)
Q Consensus 267 ~~l~~L~~L~L~~n~~l~~-lP~~-i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~ 342 (369)
..+++|+.|++++|. +.. +|.. + .+++|+.|+|++|...+.+|. +. ++|++|+|++|.|+.+|..+..+++|+
T Consensus 371 ~~l~~L~~L~Ls~N~-l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~ 447 (520)
T 2z7x_B 371 TQMKSLQQLDISQNS-VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQ 447 (520)
T ss_dssp TTCTTCCEEECCSSC-CBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCC
T ss_pred hhCCCCCEEECCCCc-CCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCC
Confidence 345556666666653 333 5554 2 556666666666443344443 33 678888888888888888888888888
Q ss_pred EEecccCCCCCcCCcc-ccCCCCCCCC
Q 017543 343 HLDLEDCKSLKSLPSG-LFLCRNKCRI 368 (369)
Q Consensus 343 ~L~Ls~n~~l~~lP~~-i~~L~~L~~L 368 (369)
+|+|++|+ +..+|.. +..+++|+.|
T Consensus 448 ~L~L~~N~-l~~l~~~~~~~l~~L~~L 473 (520)
T 2z7x_B 448 ELNVASNQ-LKSVPDGIFDRLTSLQKI 473 (520)
T ss_dssp EEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred EEECCCCc-CCccCHHHhccCCcccEE
Confidence 88888887 6678877 6677777654
No 116
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.90 E-value=3.1e-09 Score=108.13 Aligned_cols=98 Identities=20% Similarity=0.238 Sum_probs=63.0
Q ss_pred cccceeeEEeecCCCCCCC-cCccc--cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCcccCccccCCCCCc
Q 017543 267 QHLNTLVVLNLRDCKSLKS-LPAGI--HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSSIECLYKLL 342 (369)
Q Consensus 267 ~~l~~L~~L~L~~n~~l~~-lP~~i--~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~ 342 (369)
..+++|+.|++++|. +.. +|... .+++|++|+|++|...+.+|. +. ++|++|+|++|.|+.+|..++.+++|+
T Consensus 400 ~~l~~L~~L~l~~N~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~ 476 (562)
T 3a79_B 400 KNMSSLETLDVSLNS-LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQ 476 (562)
T ss_dssp TTCTTCCEEECTTSC-CBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCS
T ss_pred cCCCCCCEEECCCCc-CCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCC
Confidence 344455555555552 332 44432 455555555555333333333 22 678888888888888888888888999
Q ss_pred EEecccCCCCCcCCcc-ccCCCCCCCC
Q 017543 343 HLDLEDCKSLKSLPSG-LFLCRNKCRI 368 (369)
Q Consensus 343 ~L~Ls~n~~l~~lP~~-i~~L~~L~~L 368 (369)
+|+|++|+ +..+|.. +..+++|+.|
T Consensus 477 ~L~L~~N~-l~~l~~~~~~~l~~L~~L 502 (562)
T 3a79_B 477 ELNVASNQ-LKSVPDGVFDRLTSLQYI 502 (562)
T ss_dssp EEECCSSC-CCCCCTTSTTTCTTCCCE
T ss_pred EEECCCCC-CCCCCHHHHhcCCCCCEE
Confidence 99999888 6688887 7777777765
No 117
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.89 E-value=2.7e-09 Score=101.71 Aligned_cols=93 Identities=17% Similarity=0.142 Sum_probs=77.3
Q ss_pred EEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCcccCc-cccCCCCCcEEecccC
Q 017543 274 VLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPS-SIECLYKLLHLDLEDC 349 (369)
Q Consensus 274 ~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~LP~-~i~~L~~L~~L~Ls~n 349 (369)
.+++++++.+..+|. + .+++|+.|+|+++|.+..+|. ++.|++|+.|+|++|.|+.+|. .+++|++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 457777645889999 9 899999999997577888884 9999999999999999998765 5799999999999999
Q ss_pred CCCCcCCccccCCCCCCCC
Q 017543 350 KSLKSLPSGLFLCRNKCRI 368 (369)
Q Consensus 350 ~~l~~lP~~i~~L~~L~~L 368 (369)
+ +..+|..++...+|+.|
T Consensus 91 ~-l~~~~~~~~~~~~L~~l 108 (347)
T 2ifg_A 91 A-LESLSWKTVQGLSLQEL 108 (347)
T ss_dssp C-CSCCCSTTTCSCCCCEE
T ss_pred c-cceeCHHHcccCCceEE
Confidence 8 77888776654446544
No 118
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.89 E-value=7.6e-10 Score=104.34 Aligned_cols=100 Identities=16% Similarity=0.160 Sum_probs=82.9
Q ss_pred ccceeeEEeecCCCCCCCcCccc---cccCccEEEccCCCCCCcCCC-CCCC-----CCCCEEEeecCCCcccC-ccccC
Q 017543 268 HLNTLVVLNLRDCKSLKSLPAGI---HLEFLKELDLSGCSKLKRLPD-ISSA-----ANIEEMFLNGTAIEELP-SSIEC 337 (369)
Q Consensus 268 ~l~~L~~L~L~~n~~l~~lP~~i---~L~~L~~L~Ls~~~~l~~lP~-i~~L-----~~L~~L~Ls~n~l~~LP-~~i~~ 337 (369)
.+++|+.|+|++|...+.+|..+ .+++|++|+|++ +.+..+|. ++.+ ++|++|+|++|.|..+| ..+++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRN-VSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEES-CBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccC-CCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 57899999999996445788864 799999999999 55666787 7766 99999999999999877 78999
Q ss_pred CCCCcEEecccCCCCCc--CCccc--cCCCCCCCC
Q 017543 338 LYKLLHLDLEDCKSLKS--LPSGL--FLCRNKCRI 368 (369)
Q Consensus 338 L~~L~~L~Ls~n~~l~~--lP~~i--~~L~~L~~L 368 (369)
+++|++|+|++|++.+. +|..+ ..+++|+.|
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L 206 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVL 206 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEE
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEE
Confidence 99999999999996665 45555 677777765
No 119
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.88 E-value=3e-09 Score=110.39 Aligned_cols=120 Identities=19% Similarity=0.242 Sum_probs=97.0
Q ss_pred hhhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCc-Cccc-cccCccEEEccCCCCCCcCCC--CCCCCCCCE
Q 017543 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSL-PAGI-HLEFLKELDLSGCSKLKRLPD--ISSAANIEE 320 (369)
Q Consensus 245 aL~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~l-P~~i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~ 320 (369)
.++.+.... +.+..++. ..+..+++|++|+|++|. +..+ |..+ ++++|++|+|++ +.+..+|. ++++++|++
T Consensus 26 ~l~~L~Ls~-n~l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~~~l~~L~~ 101 (680)
T 1ziw_A 26 NITVLNLTH-NQLRRLPA-ANFTRYSQLTSLDVGFNT-ISKLEPELCQKLPMLKVLNLQH-NELSQLSDKTFAFCTNLTE 101 (680)
T ss_dssp TCSEEECCS-SCCCCCCG-GGGGGGTTCSEEECCSSC-CCCCCTTHHHHCTTCCEEECCS-SCCCCCCTTTTTTCTTCSE
T ss_pred CCcEEECCC-CCCCCcCH-HHHhCCCcCcEEECCCCc-cCccCHHHHhcccCcCEEECCC-CccCccChhhhccCCCCCE
Confidence 344444443 44566654 236789999999999994 6665 5556 899999999999 56788885 999999999
Q ss_pred EEeecCCCcccC-ccccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543 321 MFLNGTAIEELP-SSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI 368 (369)
Q Consensus 321 L~Ls~n~l~~LP-~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L 368 (369)
|+|++|.+..+| ..+++|++|++|++++|++.+..|..+..+++|++|
T Consensus 102 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 150 (680)
T 1ziw_A 102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQEL 150 (680)
T ss_dssp EECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEE
T ss_pred EECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEE
Confidence 999999999887 568999999999999999777778888888888876
No 120
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.88 E-value=2e-10 Score=115.45 Aligned_cols=118 Identities=19% Similarity=0.146 Sum_probs=92.8
Q ss_pred hhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccccccCccEEEccCCCCCCcCCC-CCCCCCCCEEEee
Q 017543 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLN 324 (369)
Q Consensus 246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls 324 (369)
|+.+.+.. +.+...+...+...+++|+.|+|++| .+..+|....+++|++|+|++ +.+..+|. ++.+++|+.|+|+
T Consensus 146 L~~L~Ls~-N~l~~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~l~~L~~L~Ls 222 (487)
T 3oja_A 146 VQYLDLKL-NEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQVVFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLR 222 (487)
T ss_dssp EEEEECTT-SCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECCCCCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECT
T ss_pred CCEEECCC-CCCCCcChHHHhhhCCcccEEecCCC-ccccccccccCCCCCEEECCC-CCCCCCCHhHcCCCCccEEEec
Confidence 44444433 33444332333447899999999999 588887655899999999999 56778886 9999999999999
Q ss_pred cCCCcccCccccCCCCCcEEecccCCCC-CcCCccccCCCCCC
Q 017543 325 GTAIEELPSSIECLYKLLHLDLEDCKSL-KSLPSGLFLCRNKC 366 (369)
Q Consensus 325 ~n~l~~LP~~i~~L~~L~~L~Ls~n~~l-~~lP~~i~~L~~L~ 366 (369)
+|.|..+|..++.+++|+.|++++|++. +.+|..+..++.|.
T Consensus 223 ~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~ 265 (487)
T 3oja_A 223 NNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265 (487)
T ss_dssp TSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHH
T ss_pred CCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCc
Confidence 9999999999999999999999999965 47777776665443
No 121
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.88 E-value=5.7e-09 Score=98.74 Aligned_cols=117 Identities=19% Similarity=0.218 Sum_probs=88.2
Q ss_pred hhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCc-Cccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEE
Q 017543 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSL-PAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMF 322 (369)
Q Consensus 246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~l-P~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~ 322 (369)
++.+.... +.+..++.. .+..+++|++|++++| .+..+ |..+ .+++|++|+|++ +.++.+|. +. ++|++|+
T Consensus 54 l~~L~L~~-n~i~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~l~~~~~--~~L~~L~ 127 (330)
T 1xku_A 54 TALLDLQN-NKITEIKDG-DFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSK-NQLKELPEKMP--KTLQELR 127 (330)
T ss_dssp CCEEECCS-SCCCCBCTT-TTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCS-SCCSBCCSSCC--TTCCEEE
T ss_pred CeEEECCC-CcCCEeChh-hhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECCC-CcCCccChhhc--ccccEEE
Confidence 44343333 445555542 3578899999999998 46666 6677 899999999998 56778886 54 7899999
Q ss_pred eecCCCcccCcc-ccCCCCCcEEecccCCCC--CcCCccccCCCCCCCC
Q 017543 323 LNGTAIEELPSS-IECLYKLLHLDLEDCKSL--KSLPSGLFLCRNKCRI 368 (369)
Q Consensus 323 Ls~n~l~~LP~~-i~~L~~L~~L~Ls~n~~l--~~lP~~i~~L~~L~~L 368 (369)
+++|.+..+|.. ++++++|++|++++|.+. +..|..+..+++|+.|
T Consensus 128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L 176 (330)
T 1xku_A 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 176 (330)
T ss_dssp CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEE
T ss_pred CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEE
Confidence 999999887764 789999999999998843 3667788888888765
No 122
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.88 E-value=3.9e-09 Score=108.10 Aligned_cols=89 Identities=18% Similarity=0.378 Sum_probs=44.5
Q ss_pred cceeeEEeecCCCCCCCcCccccccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccCccccCCCCC-------
Q 017543 269 LNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKL------- 341 (369)
Q Consensus 269 l~~L~~L~L~~n~~l~~lP~~i~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L------- 341 (369)
+++|+.|+|++| .+..+|. .+++|++|+|++ |.++.+|.++ ++|+.|+|++|.|+.+|. +.. +|
T Consensus 139 l~~L~~L~Ls~N-~l~~lp~--~l~~L~~L~Ls~-N~L~~lp~l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L 209 (571)
T 3cvr_A 139 PALLEYINADNN-QLTMLPE--LPTSLEVLSVRN-NQLTFLPELP--ESLEALDVSTNLLESLPA-VPV--RNHHSEETE 209 (571)
T ss_dssp CTTCCEEECCSS-CCSCCCC--CCTTCCEEECCS-SCCSCCCCCC--TTCCEEECCSSCCSSCCC-CC----------CC
T ss_pred CccccEEeCCCC-ccCcCCC--cCCCcCEEECCC-CCCCCcchhh--CCCCEEECcCCCCCchhh-HHH--hhhcccccc
Confidence 455555555555 3444554 345555555555 3344455533 555555555555555555 433 44
Q ss_pred cEEecccCCCCCcCCccccCCCCCCC
Q 017543 342 LHLDLEDCKSLKSLPSGLFLCRNKCR 367 (369)
Q Consensus 342 ~~L~Ls~n~~l~~lP~~i~~L~~L~~ 367 (369)
++|+|++|+ +..||.+++.+++|+.
T Consensus 210 ~~L~Ls~N~-l~~lp~~l~~l~~L~~ 234 (571)
T 3cvr_A 210 IFFRCRENR-ITHIPENILSLDPTCT 234 (571)
T ss_dssp EEEECCSSC-CCCCCGGGGGSCTTEE
T ss_pred eEEecCCCc-ceecCHHHhcCCCCCE
Confidence 555555554 4455555555555443
No 123
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.87 E-value=2.6e-09 Score=106.17 Aligned_cols=96 Identities=16% Similarity=0.292 Sum_probs=68.6
Q ss_pred ccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccCccccCCCCCcEE
Q 017543 266 SQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHL 344 (369)
Q Consensus 266 ~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L 344 (369)
+..+++|++|++++| .+..+|. + .+++|++|++++ +.+..+|.++++++|++|+|++|.++.+|. ++++++|++|
T Consensus 64 ~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~l~~-n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L 139 (466)
T 1o6v_A 64 VEYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNN-NQIADITPLANLTNLTGLTLFNNQITDIDP-LKNLTNLNRL 139 (466)
T ss_dssp GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCS-SCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEE
T ss_pred hhhhcCCCEEECCCC-ccCCchh-hhccccCCEEECCC-CccccChhhcCCCCCCEEECCCCCCCCChH-HcCCCCCCEE
Confidence 456778888888887 4677766 6 788888888887 445556557778888888888888877765 7778888888
Q ss_pred ecccCCCCCcCCccccCCCCCCC
Q 017543 345 DLEDCKSLKSLPSGLFLCRNKCR 367 (369)
Q Consensus 345 ~Ls~n~~l~~lP~~i~~L~~L~~ 367 (369)
++++|+ +..+|. +..+++|+.
T Consensus 140 ~l~~n~-l~~~~~-~~~l~~L~~ 160 (466)
T 1o6v_A 140 ELSSNT-ISDISA-LSGLTSLQQ 160 (466)
T ss_dssp EEEEEE-ECCCGG-GTTCTTCSE
T ss_pred ECCCCc-cCCChh-hccCCcccE
Confidence 888776 555553 555555544
No 124
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.87 E-value=5.8e-09 Score=103.91 Aligned_cols=109 Identities=19% Similarity=0.186 Sum_probs=84.6
Q ss_pred hhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCCCCCCCCCCEEEee
Q 017543 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLN 324 (369)
Q Consensus 246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls 324 (369)
|+.+.... +.+..++ ++.+++|+.|++++| .+..+| + .+++|++|+|++ +.+..+| ++.+++|++|+++
T Consensus 66 L~~L~Ls~-n~l~~~~----~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~~L~L~~-N~l~~l~-~~~l~~L~~L~l~ 135 (457)
T 3bz5_A 66 LTKLICTS-NNITTLD----LSQNTNLTYLACDSN-KLTNLD--VTPLTKLTYLNCDT-NKLTKLD-VSQNPLLTYLNCA 135 (457)
T ss_dssp CSEEECCS-SCCSCCC----CTTCTTCSEEECCSS-CCSCCC--CTTCTTCCEEECCS-SCCSCCC-CTTCTTCCEEECT
T ss_pred CCEEEccC-CcCCeEc----cccCCCCCEEECcCC-CCceee--cCCCCcCCEEECCC-CcCCeec-CCCCCcCCEEECC
Confidence 44444433 3455553 567889999999998 477775 6 899999999998 4566776 8889999999999
Q ss_pred cCCCcccCccccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543 325 GTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI 368 (369)
Q Consensus 325 ~n~l~~LP~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L 368 (369)
+|.++.+| ++++++|++|++++|+.++.++ +..+++|+.|
T Consensus 136 ~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~--~~~l~~L~~L 175 (457)
T 3bz5_A 136 RNTLTEID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTL 175 (457)
T ss_dssp TSCCSCCC--CTTCTTCCEEECTTCSCCCCCC--CTTCTTCCEE
T ss_pred CCccceec--cccCCcCCEEECCCCCcccccc--cccCCcCCEE
Confidence 99999885 8899999999999997788773 6667777654
No 125
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.87 E-value=4.3e-09 Score=99.79 Aligned_cols=81 Identities=17% Similarity=0.313 Sum_probs=48.8
Q ss_pred ccccceeeEEeecCCCCCCCc-Cccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCcccCcc-ccCCCCC
Q 017543 266 SQHLNTLVVLNLRDCKSLKSL-PAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSS-IECLYKL 341 (369)
Q Consensus 266 ~~~l~~L~~L~L~~n~~l~~l-P~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~~LP~~-i~~L~~L 341 (369)
+..+++|+.|++++| .+..+ |..+ .+++|++|+|++ +.+..+|. +. ++|++|+|++|.|..+|.. ++++++|
T Consensus 74 ~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L 149 (332)
T 2ft3_A 74 FKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISK-NHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNM 149 (332)
T ss_dssp TTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECCS-SCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSC
T ss_pred hhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECCC-CcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccC
Confidence 455666666666666 34444 4444 566666666666 44556664 43 5666666666666666543 5666666
Q ss_pred cEEecccCC
Q 017543 342 LHLDLEDCK 350 (369)
Q Consensus 342 ~~L~Ls~n~ 350 (369)
++|++++|.
T Consensus 150 ~~L~l~~n~ 158 (332)
T 2ft3_A 150 NCIEMGGNP 158 (332)
T ss_dssp CEEECCSCC
T ss_pred CEEECCCCc
Confidence 666666665
No 126
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.87 E-value=4.8e-09 Score=107.29 Aligned_cols=110 Identities=22% Similarity=0.240 Sum_probs=66.2
Q ss_pred cccCCCCCCCccccceeeEEeecCCCCCCCc-Cccc-cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCccc
Q 017543 256 IFTKTPNPSFSQHLNTLVVLNLRDCKSLKSL-PAGI-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEEL 331 (369)
Q Consensus 256 ~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~l-P~~i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~L 331 (369)
.+..+|.. +..+++|+.|++++|. +..+ |..+ .+++|+.|++++|.....+|. ++.+++|++|+|++|.+..+
T Consensus 289 ~l~~lp~~--l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 365 (606)
T 3t6q_A 289 HLSELPSG--LVGLSTLKKLVLSANK-FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETS 365 (606)
T ss_dssp CCSCCCSS--CCSCTTCCEEECTTCC-CSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEE
T ss_pred ccCCCChh--hcccccCCEEECccCC-cCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccc
Confidence 34455543 4566667777777663 4444 3344 666666666666544445553 66677777777777766644
Q ss_pred ---CccccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543 332 ---PSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI 368 (369)
Q Consensus 332 ---P~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L 368 (369)
|..++.+++|++|++++|++.+..|..+..+++|+.|
T Consensus 366 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 405 (606)
T 3t6q_A 366 DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELL 405 (606)
T ss_dssp EESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEE
T ss_pred cCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeE
Confidence 4556667777777777666444555556666655544
No 127
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.86 E-value=6e-09 Score=98.75 Aligned_cols=104 Identities=19% Similarity=0.375 Sum_probs=84.7
Q ss_pred cccCCCCCCCccccceeeEEeecCCCCCCCcCc-cc-cccCccEEEccCCCCCCcC-CC-CCCCCCCCEEEeecCCCccc
Q 017543 256 IFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPA-GI-HLEFLKELDLSGCSKLKRL-PD-ISSAANIEEMFLNGTAIEEL 331 (369)
Q Consensus 256 ~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~-~i-~L~~L~~L~Ls~~~~l~~l-P~-i~~L~~L~~L~Ls~n~l~~L 331 (369)
.+..+|.. + .++|+.|++++| .+..+++ .+ .+++|++|+|++| .+..+ |. ++++++|++|+|++|.++.+
T Consensus 44 ~l~~ip~~--~--~~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l 117 (332)
T 2ft3_A 44 GLKAVPKE--I--SPDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISKNHLVEI 117 (332)
T ss_dssp CCSSCCSC--C--CTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECCSSCCCSC
T ss_pred CccccCCC--C--CCCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECCCCcCCcc
Confidence 35566643 2 368999999999 5777765 56 8999999999995 56666 55 99999999999999999999
Q ss_pred CccccCCCCCcEEecccCCCCCcCCcc-ccCCCCCCCC
Q 017543 332 PSSIECLYKLLHLDLEDCKSLKSLPSG-LFLCRNKCRI 368 (369)
Q Consensus 332 P~~i~~L~~L~~L~Ls~n~~l~~lP~~-i~~L~~L~~L 368 (369)
|..+. ++|++|++++|+ ++.+|.. +..+++|+.|
T Consensus 118 ~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L 152 (332)
T 2ft3_A 118 PPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCI 152 (332)
T ss_dssp CSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEE
T ss_pred Ccccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEE
Confidence 99887 899999999998 6667654 7778888765
No 128
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.84 E-value=3.9e-09 Score=100.32 Aligned_cols=98 Identities=16% Similarity=0.235 Sum_probs=65.5
Q ss_pred ccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcc-cCccccCCCCCcE
Q 017543 266 SQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEE-LPSSIECLYKLLH 343 (369)
Q Consensus 266 ~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~-LP~~i~~L~~L~~ 343 (369)
+..+++|+.|++++| .+..++ .+ .+++|++|++++| .+..+|.+..+++|+.|+|++|.+.. .|..++.+++|++
T Consensus 239 ~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 315 (347)
T 4fmz_A 239 LANLSQLTWLEIGTN-QISDIN-AVKDLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315 (347)
T ss_dssp GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSE
T ss_pred hhcCCCCCEEECCCC-ccCCCh-hHhcCCCcCEEEccCC-ccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCE
Confidence 456677777777777 456554 34 6777777777773 56666656777777777777777764 3455777777888
Q ss_pred EecccCCCCCcCCccccCCCCCCCC
Q 017543 344 LDLEDCKSLKSLPSGLFLCRNKCRI 368 (369)
Q Consensus 344 L~Ls~n~~l~~lP~~i~~L~~L~~L 368 (369)
|+|++|+ +..+|. +..+++|+.|
T Consensus 316 L~L~~n~-l~~~~~-~~~l~~L~~L 338 (347)
T 4fmz_A 316 LFLSQNH-ITDIRP-LASLSKMDSA 338 (347)
T ss_dssp EECCSSS-CCCCGG-GGGCTTCSEE
T ss_pred EEccCCc-cccccC-hhhhhcccee
Confidence 8887777 444444 6666666654
No 129
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.81 E-value=2.8e-09 Score=100.23 Aligned_cols=117 Identities=18% Similarity=0.156 Sum_probs=82.8
Q ss_pred hhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCC--cCc--cc-cccCccEEEccCCCCCCcCCC-----CCCC
Q 017543 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKS--LPA--GI-HLEFLKELDLSGCSKLKRLPD-----ISSA 315 (369)
Q Consensus 246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~--lP~--~i-~L~~L~~L~Ls~~~~l~~lP~-----i~~L 315 (369)
|+.+.... +.+...+. ..+..+++|+.|+|++|...+. ++. .+ .+++|++|+|++ +.++.+|. ++.+
T Consensus 147 L~~L~Ls~-n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 147 LKVLSIAQ-AHSPAFSC-EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRN-TGMETPTGVCAALAAAG 223 (310)
T ss_dssp CCEEEEEC-CSSCCCCT-TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCS-SCCCCHHHHHHHHHHHT
T ss_pred CCEEEeeC-CCcchhhH-HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCC-CCCCchHHHHHHHHhcC
Confidence 44444444 33444443 2356788999999999853321 332 22 688999999998 45666654 3678
Q ss_pred CCCCEEEeecCCCccc-CccccCC---CCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543 316 ANIEEMFLNGTAIEEL-PSSIECL---YKLLHLDLEDCKSLKSLPSGLFLCRNKCRI 368 (369)
Q Consensus 316 ~~L~~L~Ls~n~l~~L-P~~i~~L---~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L 368 (369)
++|++|+|++|.|..+ |..++.+ ++|++|+|++|+ +..+|..+. ++|+.|
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~--~~L~~L 277 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPKGLP--AKLRVL 277 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCSCCC--SCCSCE
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC-CCchhhhhc--CCCCEE
Confidence 9999999999999866 8888777 599999999988 668898875 566654
No 130
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.76 E-value=1.2e-08 Score=101.47 Aligned_cols=96 Identities=18% Similarity=0.340 Sum_probs=84.7
Q ss_pred cccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccCccccCCCCCcEEe
Q 017543 267 QHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLD 345 (369)
Q Consensus 267 ~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L~ 345 (369)
..+.+|+.|++.+| .+..+|. + .+++|++|+|++ +.+..+|.++++++|++|+|++|.+..+|. ++++++|++|+
T Consensus 43 ~~l~~l~~L~l~~~-~i~~l~~-~~~l~~L~~L~Ls~-n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~ 118 (466)
T 1o6v_A 43 TDLDQVTTLQADRL-GIKSIDG-VEYLNNLTQINFSN-NQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLT 118 (466)
T ss_dssp HHHHTCCEEECCSS-CCCCCTT-GGGCTTCCEEECCS-SCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred hHhccccEEecCCC-CCccCcc-hhhhcCCCEEECCC-CccCCchhhhccccCCEEECCCCccccChh-hcCCCCCCEEE
Confidence 35788999999999 5888885 6 899999999999 567777779999999999999999999988 99999999999
Q ss_pred cccCCCCCcCCccccCCCCCCCC
Q 017543 346 LEDCKSLKSLPSGLFLCRNKCRI 368 (369)
Q Consensus 346 Ls~n~~l~~lP~~i~~L~~L~~L 368 (369)
+++|. +..+|. +..+++|++|
T Consensus 119 L~~n~-l~~~~~-~~~l~~L~~L 139 (466)
T 1o6v_A 119 LFNNQ-ITDIDP-LKNLTNLNRL 139 (466)
T ss_dssp CCSSC-CCCCGG-GTTCTTCSEE
T ss_pred CCCCC-CCCChH-HcCCCCCCEE
Confidence 99998 777776 8888888876
No 131
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.75 E-value=6.3e-09 Score=106.54 Aligned_cols=106 Identities=25% Similarity=0.249 Sum_probs=84.7
Q ss_pred hhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccccccCccEEEccCCCCCCcCCCCCCCCCC-------
Q 017543 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANI------- 318 (369)
Q Consensus 246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i~L~~L~~L~Ls~~~~l~~lP~i~~L~~L------- 318 (369)
|+.+.+. .+.+..+|. .+++|+.|+|++| .+..+|. +. ++|++|+|++ |.+..+|.++. +|
T Consensus 142 L~~L~Ls-~N~l~~lp~-----~l~~L~~L~Ls~N-~L~~lp~-l~-~~L~~L~Ls~-N~L~~lp~~~~--~L~~~~~~L 209 (571)
T 3cvr_A 142 LEYINAD-NNQLTMLPE-----LPTSLEVLSVRNN-QLTFLPE-LP-ESLEALDVST-NLLESLPAVPV--RNHHSEETE 209 (571)
T ss_dssp CCEEECC-SSCCSCCCC-----CCTTCCEEECCSS-CCSCCCC-CC-TTCCEEECCS-SCCSSCCCCC----------CC
T ss_pred ccEEeCC-CCccCcCCC-----cCCCcCEEECCCC-CCCCcch-hh-CCCCEEECcC-CCCCchhhHHH--hhhcccccc
Confidence 4333333 344555653 4689999999999 5888998 66 8999999999 57889998544 67
Q ss_pred CEEEeecCCCcccCccccCCCCCcEEecccCCCCCcCCccccCCC
Q 017543 319 EEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCR 363 (369)
Q Consensus 319 ~~L~Ls~n~l~~LP~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~ 363 (369)
+.|+|++|.|+.||.++++|++|++|+|++|++.+.+|..+..+.
T Consensus 210 ~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 210 IFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp EEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred eEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 999999999999999999999999999999998888888876653
No 132
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.74 E-value=3e-08 Score=102.55 Aligned_cols=89 Identities=30% Similarity=0.407 Sum_probs=51.3
Q ss_pred ceeeEEeecCCCCCCCcCccccccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccCccccCCCCCcEEecccC
Q 017543 270 NTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDC 349 (369)
Q Consensus 270 ~~L~~L~L~~n~~l~~lP~~i~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L~Ls~n 349 (369)
.+|+.|++++| .+..+|.. +++|+.|+|++ |.+..+| ..+++|++|+|++|.|+.+|. .+++|++|+|++|
T Consensus 201 ~~L~~L~L~~N-~l~~l~~~--~~~L~~L~Ls~-N~L~~lp--~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N 271 (622)
T 3g06_A 201 SELYKLWAYNN-RLTSLPAL--PSGLKELIVSG-NRLTSLP--VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRN 271 (622)
T ss_dssp TTCCEEECCSS-CCSSCCCC--CTTCCEEECCS-SCCSCCC--CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS
T ss_pred chhhEEECcCC-cccccCCC--CCCCCEEEccC-CccCcCC--CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCC
Confidence 34444445444 24444432 35566666666 3455566 344566666666666666665 4566666666666
Q ss_pred CCCCcCCccccCCCCCCCC
Q 017543 350 KSLKSLPSGLFLCRNKCRI 368 (369)
Q Consensus 350 ~~l~~lP~~i~~L~~L~~L 368 (369)
+ +..||..+.++++|+.|
T Consensus 272 ~-L~~lp~~l~~l~~L~~L 289 (622)
T 3g06_A 272 Q-LTRLPESLIHLSSETTV 289 (622)
T ss_dssp C-CCSCCGGGGGSCTTCEE
T ss_pred C-CCcCCHHHhhccccCEE
Confidence 5 44666666666666544
No 133
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.73 E-value=3.7e-08 Score=97.92 Aligned_cols=78 Identities=18% Similarity=0.302 Sum_probs=39.2
Q ss_pred ccccceeeEEeecCCCCCCCcCccccccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccCccccCCCCCcEEe
Q 017543 266 SQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLD 345 (369)
Q Consensus 266 ~~~l~~L~~L~L~~n~~l~~lP~~i~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L~ 345 (369)
++.+++|+.|++++| .+..+|.. +.+|++|++++ +.+..+|+++++++|++|++++|.++.+|... .+|++|+
T Consensus 149 ~~~l~~L~~L~l~~N-~l~~lp~~--~~~L~~L~L~~-n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~ 221 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNN-SLKKLPDL--PPSLEFIAAGN-NQLEELPELQNLPFLTAIYADNNSLKKLPDLP---LSLESIV 221 (454)
T ss_dssp CTTCTTCCEEECCSS-CCSCCCCC--CTTCCEEECCS-SCCSSCCCCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEE
T ss_pred cCCCCCCCEEECCCC-cCcccCCC--cccccEEECcC-CcCCcCccccCCCCCCEEECCCCcCCcCCCCc---CcccEEE
Confidence 455666666666666 35555543 23555555555 33444555555555555555555554444322 2344444
Q ss_pred cccCC
Q 017543 346 LEDCK 350 (369)
Q Consensus 346 Ls~n~ 350 (369)
+++|.
T Consensus 222 l~~n~ 226 (454)
T 1jl5_A 222 AGNNI 226 (454)
T ss_dssp CCSSC
T ss_pred CcCCc
Confidence 44443
No 134
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.67 E-value=6.6e-08 Score=96.15 Aligned_cols=84 Identities=30% Similarity=0.477 Sum_probs=68.2
Q ss_pred ceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccCccccCCCCCcEEeccc
Q 017543 270 NTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLED 348 (369)
Q Consensus 270 ~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L~Ls~ 348 (369)
++|++|++++| .+..+| .+ .+++|++|++++ +.+..+|.. ..+|++|++++|.++.+| .++++++|++|++++
T Consensus 131 ~~L~~L~L~~n-~l~~lp-~~~~l~~L~~L~l~~-N~l~~lp~~--~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~ 204 (454)
T 1jl5_A 131 PLLEYLGVSNN-QLEKLP-ELQNSSFLKIIDVDN-NSLKKLPDL--PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADN 204 (454)
T ss_dssp TTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCS-SCCSCCCCC--CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCS
T ss_pred CCCCEEECcCC-CCCCCc-ccCCCCCCCEEECCC-CcCcccCCC--cccccEEECcCCcCCcCc-cccCCCCCCEEECCC
Confidence 68899999998 577788 47 899999999998 467778862 248999999999999888 689999999999999
Q ss_pred CCCCCcCCcccc
Q 017543 349 CKSLKSLPSGLF 360 (369)
Q Consensus 349 n~~l~~lP~~i~ 360 (369)
|+ +..+|....
T Consensus 205 N~-l~~l~~~~~ 215 (454)
T 1jl5_A 205 NS-LKKLPDLPL 215 (454)
T ss_dssp SC-CSSCCCCCT
T ss_pred Cc-CCcCCCCcC
Confidence 88 556776543
No 135
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.67 E-value=6.4e-10 Score=105.19 Aligned_cols=101 Identities=22% Similarity=0.312 Sum_probs=64.4
Q ss_pred ccccceeeEEeecCCCCCCC--cCccc-ccc-CccEEEccCCC-CC--CcCCC-CCCCCCCCEEEeecCC-Cc-ccCccc
Q 017543 266 SQHLNTLVVLNLRDCKSLKS--LPAGI-HLE-FLKELDLSGCS-KL--KRLPD-ISSAANIEEMFLNGTA-IE-ELPSSI 335 (369)
Q Consensus 266 ~~~l~~L~~L~L~~n~~l~~--lP~~i-~L~-~L~~L~Ls~~~-~l--~~lP~-i~~L~~L~~L~Ls~n~-l~-~LP~~i 335 (369)
+..+++|+.|++++|..+.. ++..+ .++ +|++|+|++|. .+ ..+|. ++++++|++|+|++|. ++ ..|..+
T Consensus 164 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l 243 (336)
T 2ast_B 164 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF 243 (336)
T ss_dssp HHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG
T ss_pred HhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH
Confidence 44567777777777733443 45545 677 77777777753 23 34555 5677778888887776 54 566677
Q ss_pred cCCCCCcEEecccCCCCCcCCc---cccCCCCCCCC
Q 017543 336 ECLYKLLHLDLEDCKSLKSLPS---GLFLCRNKCRI 368 (369)
Q Consensus 336 ~~L~~L~~L~Ls~n~~l~~lP~---~i~~L~~L~~L 368 (369)
+++++|++|+|++|. ...|. .+..+++|+.|
T Consensus 244 ~~l~~L~~L~l~~~~--~~~~~~~~~l~~~~~L~~L 277 (336)
T 2ast_B 244 FQLNYLQHLSLSRCY--DIIPETLLELGEIPTLKTL 277 (336)
T ss_dssp GGCTTCCEEECTTCT--TCCGGGGGGGGGCTTCCEE
T ss_pred hCCCCCCEeeCCCCC--CCCHHHHHHHhcCCCCCEE
Confidence 777788888887775 22333 35556666654
No 136
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.65 E-value=4e-08 Score=94.04 Aligned_cols=80 Identities=14% Similarity=0.191 Sum_probs=39.7
Q ss_pred ceeeEEeecCCCCCCCcCcc-c-cccCccEEEccCCCCCCcCCC--CCCCCCCCE-EEeecCCCcccC-ccccCCCCCcE
Q 017543 270 NTLVVLNLRDCKSLKSLPAG-I-HLEFLKELDLSGCSKLKRLPD--ISSAANIEE-MFLNGTAIEELP-SSIECLYKLLH 343 (369)
Q Consensus 270 ~~L~~L~L~~n~~l~~lP~~-i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~-L~Ls~n~l~~LP-~~i~~L~~L~~ 343 (369)
.+++.|+|++| .++.+|.. + +|++|++|+|++|..++.+|. +.+|++|++ +.+++|+|..+| ..++.|++|++
T Consensus 30 ~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 30 RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108 (350)
T ss_dssp TTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred CCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence 34555555555 35555543 2 455555555555443444443 445555443 333445555553 23455555555
Q ss_pred EecccCC
Q 017543 344 LDLEDCK 350 (369)
Q Consensus 344 L~Ls~n~ 350 (369)
|++++|+
T Consensus 109 L~l~~n~ 115 (350)
T 4ay9_X 109 LLISNTG 115 (350)
T ss_dssp EEEEEEC
T ss_pred ccccccc
Confidence 5555554
No 137
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.63 E-value=8.7e-08 Score=99.06 Aligned_cols=86 Identities=28% Similarity=0.332 Sum_probs=43.8
Q ss_pred ceeeEEeecCCCCCCCcCccccccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccCcccc-------------
Q 017543 270 NTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIE------------- 336 (369)
Q Consensus 270 ~~L~~L~L~~n~~l~~lP~~i~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP~~i~------------- 336 (369)
++|+.|+|++| .+..+|. .+++|++|+|++ +.+..+|. .+++|++|+|++|.|+.+|..+.
T Consensus 61 ~~L~~L~L~~N-~l~~lp~--~l~~L~~L~Ls~-N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~~l~~L~~L~L~~N~l~ 134 (622)
T 3g06_A 61 AHITTLVIPDN-NLTSLPA--LPPELRTLEVSG-NQLTSLPV--LPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT 134 (622)
T ss_dssp TTCSEEEECSC-CCSCCCC--CCTTCCEEEECS-CCCSCCCC--CCTTCCEEEECSCCCCCCCCCCTTCCEEECCSSCCS
T ss_pred CCCcEEEecCC-CCCCCCC--cCCCCCEEEcCC-CcCCcCCC--CCCCCCEEECcCCcCCCCCCCCCCcCEEECCCCCCC
Confidence 45556666655 3555554 345555555555 33445554 34445555555444444443110
Q ss_pred ----CCCCCcEEecccCCCCCcCCccccCC
Q 017543 337 ----CLYKLLHLDLEDCKSLKSLPSGLFLC 362 (369)
Q Consensus 337 ----~L~~L~~L~Ls~n~~l~~lP~~i~~L 362 (369)
.+++|++|+|++|+ +..+|..+.+|
T Consensus 135 ~lp~~l~~L~~L~Ls~N~-l~~l~~~~~~L 163 (622)
T 3g06_A 135 SLPVLPPGLQELSVSDNQ-LASLPALPSEL 163 (622)
T ss_dssp CCCCCCTTCCEEECCSSC-CSCCCCCCTTC
T ss_pred cCCCCCCCCCEEECcCCc-CCCcCCccCCC
Confidence 12566677777665 55555544433
No 138
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.58 E-value=4.1e-09 Score=99.62 Aligned_cols=99 Identities=14% Similarity=0.238 Sum_probs=51.7
Q ss_pred ccceeeEEeecCCCCCCC--cCccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecC-CCc--ccCccccCCCC
Q 017543 268 HLNTLVVLNLRDCKSLKS--LPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGT-AIE--ELPSSIECLYK 340 (369)
Q Consensus 268 ~l~~L~~L~L~~n~~l~~--lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n-~l~--~LP~~i~~L~~ 340 (369)
.+++|+.|++++|. +.. +|..+ .+++|++|+|++|......|. ++.+++|++|+|++| .++ .+|..++++++
T Consensus 91 ~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~ 169 (336)
T 2ast_B 91 SPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 169 (336)
T ss_dssp CCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred cCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCC
Confidence 45666666666663 332 44444 566666666665432223443 555566666666665 454 25555555556
Q ss_pred CcEEecccC-CCCCc--CCccccCCC-CCCCC
Q 017543 341 LLHLDLEDC-KSLKS--LPSGLFLCR-NKCRI 368 (369)
Q Consensus 341 L~~L~Ls~n-~~l~~--lP~~i~~L~-~L~~L 368 (369)
|++|+|++| . +.. +|..+..++ +|++|
T Consensus 170 L~~L~l~~~~~-l~~~~~~~~~~~l~~~L~~L 200 (336)
T 2ast_B 170 LDELNLSWCFD-FTEKHVQVAVAHVSETITQL 200 (336)
T ss_dssp CCEEECCCCTT-CCHHHHHHHHHHSCTTCCEE
T ss_pred CCEEcCCCCCC-cChHHHHHHHHhcccCCCEE
Confidence 666666555 3 221 444444555 44443
No 139
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.46 E-value=1.8e-08 Score=97.48 Aligned_cols=36 Identities=28% Similarity=0.360 Sum_probs=17.4
Q ss_pred CCCCCEEEeecCCCcc-----cCccc-cCCCCCcEEecccCC
Q 017543 315 AANIEEMFLNGTAIEE-----LPSSI-ECLYKLLHLDLEDCK 350 (369)
Q Consensus 315 L~~L~~L~Ls~n~l~~-----LP~~i-~~L~~L~~L~Ls~n~ 350 (369)
+++|+.|+|++|.|.. +|..+ +++++|++|+|++|+
T Consensus 273 ~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 273 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp SCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred CCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 4445555555554443 44444 344555555555444
No 140
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.30 E-value=1.4e-07 Score=87.31 Aligned_cols=98 Identities=19% Similarity=0.211 Sum_probs=68.7
Q ss_pred ccceeeE--EeecCCCCCCCcCccc-----cccCccEEEccCCCCCCcCC---C-CCCCCCCCEEEeecCCCcccCcccc
Q 017543 268 HLNTLVV--LNLRDCKSLKSLPAGI-----HLEFLKELDLSGCSKLKRLP---D-ISSAANIEEMFLNGTAIEELPSSIE 336 (369)
Q Consensus 268 ~l~~L~~--L~L~~n~~l~~lP~~i-----~L~~L~~L~Ls~~~~l~~lP---~-i~~L~~L~~L~Ls~n~l~~LP~~i~ 336 (369)
..+.|.. ++++.| ....++..+ ++++|+.|+|++ |.+..++ . ++.+++|+.|+|++|.|..+ ..++
T Consensus 139 ~dp~L~~~~l~l~~N-~~~~~~~~l~i~~~~l~~L~~L~Ls~-N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~ 215 (267)
T 3rw6_A 139 SDPDLVAQNIDVVLN-RRSCMAATLRIIEENIPELLSLNLSN-NRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELD 215 (267)
T ss_dssp GCHHHHHTTCCCCTT-SHHHHHHHHHHHHHHCTTCCEEECTT-SCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGG
T ss_pred CCcchhhcCccccCC-HHHHHHHHHHHHHhhCCCCCEEECCC-CCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhh
Confidence 3444554 556666 344454433 578999999998 4555544 4 56889999999999999877 4466
Q ss_pred CCC--CCcEEecccCCCCCcCCc-------cccCCCCCCCC
Q 017543 337 CLY--KLLHLDLEDCKSLKSLPS-------GLFLCRNKCRI 368 (369)
Q Consensus 337 ~L~--~L~~L~Ls~n~~l~~lP~-------~i~~L~~L~~L 368 (369)
.|. +|++|+|++|++.+.+|. -+..+++|..|
T Consensus 216 ~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~L 256 (267)
T 3rw6_A 216 KIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRL 256 (267)
T ss_dssp GGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEE
T ss_pred hcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeE
Confidence 666 899999999997777773 25667777765
No 141
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.27 E-value=1.4e-07 Score=91.19 Aligned_cols=102 Identities=19% Similarity=0.109 Sum_probs=79.7
Q ss_pred ccccceeeEEeecCCCCCC------CcCccc-cccCccEEEccCCCCC----CcCCC-CCCCCCCCEEEeecCCCcc---
Q 017543 266 SQHLNTLVVLNLRDCKSLK------SLPAGI-HLEFLKELDLSGCSKL----KRLPD-ISSAANIEEMFLNGTAIEE--- 330 (369)
Q Consensus 266 ~~~l~~L~~L~L~~n~~l~------~lP~~i-~L~~L~~L~Ls~~~~l----~~lP~-i~~L~~L~~L~Ls~n~l~~--- 330 (369)
+..+++|+.|+|++| .+. .+|..+ .+++|++|+|++|..- ..+|. +..+++|++|+|++|.|..
T Consensus 183 l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 261 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 261 (386)
T ss_dssp HHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred HHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence 345778999999999 465 344466 8899999999985531 66786 8899999999999999874
Q ss_pred --cCccc--cCCCCCcEEecccCCCCC----cCCccc-cCCCCCCCC
Q 017543 331 --LPSSI--ECLYKLLHLDLEDCKSLK----SLPSGL-FLCRNKCRI 368 (369)
Q Consensus 331 --LP~~i--~~L~~L~~L~Ls~n~~l~----~lP~~i-~~L~~L~~L 368 (369)
+|..+ +++++|++|+|++|.+.. .+|..+ .++++|+.|
T Consensus 262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L 308 (386)
T 2ca6_A 262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 308 (386)
T ss_dssp HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEE
Confidence 57777 459999999999998444 388888 557888765
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.17 E-value=2.4e-06 Score=80.72 Aligned_cols=95 Identities=15% Similarity=0.147 Sum_probs=82.2
Q ss_pred cceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCC--CCCCCCCC-EEEeecCCCcccCc-cccCCCCCc
Q 017543 269 LNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIE-EMFLNGTAIEELPS-SIECLYKLL 342 (369)
Q Consensus 269 l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~-~L~Ls~n~l~~LP~-~i~~L~~L~ 342 (369)
+.+|+.|+|++| .+..+|... .+.+|+.|+|.+| +..+++ +.+|.+|+ .|+|.+ .++.++. .+..+.+|+
T Consensus 225 ~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 225 MPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLR 300 (329)
T ss_dssp CTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEE
T ss_pred cCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCC
Confidence 678999999998 589999876 8999999999984 888996 99999999 999988 8888874 579999999
Q ss_pred EEecccCCCCCcCCc-cccCCCCCCCC
Q 017543 343 HLDLEDCKSLKSLPS-GLFLCRNKCRI 368 (369)
Q Consensus 343 ~L~Ls~n~~l~~lP~-~i~~L~~L~~L 368 (369)
.|++++|+ +..|+. .+.++++|+.|
T Consensus 301 ~l~l~~n~-i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 301 YVLATGDK-ITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp EEEECSSC-CCEECTTTTCTTCCCCEE
T ss_pred EEEeCCCc-cCccchhhhcCCcchhhh
Confidence 99998888 777876 46678888865
No 143
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.00 E-value=1.1e-06 Score=84.37 Aligned_cols=101 Identities=21% Similarity=0.136 Sum_probs=70.2
Q ss_pred ccccc-eeeEEeecCCCCCCCc-Cccc-cc-----cCccEEEccCCCCCCcCC-C-CC----CC-CCCCEEEeecCCCcc
Q 017543 266 SQHLN-TLVVLNLRDCKSLKSL-PAGI-HL-----EFLKELDLSGCSKLKRLP-D-IS----SA-ANIEEMFLNGTAIEE 330 (369)
Q Consensus 266 ~~~l~-~L~~L~L~~n~~l~~l-P~~i-~L-----~~L~~L~Ls~~~~l~~lP-~-i~----~L-~~L~~L~Ls~n~l~~ 330 (369)
+..++ +|+.|+|++| .++.. +..+ .+ ++|++|+|++|. ++..+ . ++ .+ ++|++|+|++|.|..
T Consensus 46 l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 123 (362)
T 3goz_A 46 FANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFSS 123 (362)
T ss_dssp HHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred HHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCcCCc
Confidence 34566 8999999999 46654 4444 44 899999999954 55444 3 33 34 899999999999987
Q ss_pred cCcc-----ccCC-CCCcEEecccCCCCC----cCCccccCCC-CCCCC
Q 017543 331 LPSS-----IECL-YKLLHLDLEDCKSLK----SLPSGLFLCR-NKCRI 368 (369)
Q Consensus 331 LP~~-----i~~L-~~L~~L~Ls~n~~l~----~lP~~i~~L~-~L~~L 368 (369)
.+.. +..+ ++|++|+|++|.+.. .++..+..++ +|++|
T Consensus 124 ~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L 172 (362)
T 3goz_A 124 KSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSL 172 (362)
T ss_dssp SCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred HHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEe
Confidence 6642 3343 689999999998432 4555555554 66654
No 144
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.94 E-value=1.6e-06 Score=83.20 Aligned_cols=96 Identities=19% Similarity=0.211 Sum_probs=67.0
Q ss_pred ceeeEEeecCCCCCCCcCccc------c-ccCccEEEccCCCCCC-----cCCC-CCCCC-CCCEEEeecCCCcccCc--
Q 017543 270 NTLVVLNLRDCKSLKSLPAGI------H-LEFLKELDLSGCSKLK-----RLPD-ISSAA-NIEEMFLNGTAIEELPS-- 333 (369)
Q Consensus 270 ~~L~~L~L~~n~~l~~lP~~i------~-L~~L~~L~Ls~~~~l~-----~lP~-i~~L~-~L~~L~Ls~n~l~~LP~-- 333 (369)
++|+.|+|++|. ++..+... . .++|++|+|++| .++ .++. +..+. +|++|+|++|.|...+.
T Consensus 109 ~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 186 (362)
T 3goz_A 109 FTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAE 186 (362)
T ss_dssp TTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHH
T ss_pred CCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHH
Confidence 689999999994 66655432 2 258999999984 455 3333 44555 89999999999975542
Q ss_pred ---cccCC-CCCcEEecccCCCCCc-----CCccccCC-CCCCCC
Q 017543 334 ---SIECL-YKLLHLDLEDCKSLKS-----LPSGLFLC-RNKCRI 368 (369)
Q Consensus 334 ---~i~~L-~~L~~L~Ls~n~~l~~-----lP~~i~~L-~~L~~L 368 (369)
.+..+ ++|++|+|++|. ++. +|..+..+ ++|+.|
T Consensus 187 l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L 230 (362)
T 3goz_A 187 LAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSL 230 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEE
T ss_pred HHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEE
Confidence 34455 599999999998 555 67766653 366654
No 145
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.87 E-value=6.3e-06 Score=76.11 Aligned_cols=77 Identities=31% Similarity=0.430 Sum_probs=61.0
Q ss_pred ccceeeEEeecCCCCCCCcC---ccc-cccCccEEEccCCCCCCcCCCCCCCC--CCCEEEeecCCCc-ccCc-------
Q 017543 268 HLNTLVVLNLRDCKSLKSLP---AGI-HLEFLKELDLSGCSKLKRLPDISSAA--NIEEMFLNGTAIE-ELPS------- 333 (369)
Q Consensus 268 ~l~~L~~L~L~~n~~l~~lP---~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~--~L~~L~Ls~n~l~-~LP~------- 333 (369)
++++|+.|+|++| .+..++ ..+ .+++|+.|+|++ |.+..+.++..+. +|++|+|++|.+. .+|.
T Consensus 168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTT-SCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCC-CccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 4678999999999 466544 555 899999999998 6677776544444 9999999999997 5663
Q ss_pred cccCCCCCcEEec
Q 017543 334 SIECLYKLLHLDL 346 (369)
Q Consensus 334 ~i~~L~~L~~L~L 346 (369)
.+..+++|+.||=
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 3678999999964
No 146
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.85 E-value=7.8e-07 Score=87.46 Aligned_cols=101 Identities=22% Similarity=0.275 Sum_probs=74.1
Q ss_pred ccccceeeEEeecCCCCCCC-cCccc--ccc----CccEEEccCCCCCC-----cCCC-CCCCCCCCEEEeecCCCccc-
Q 017543 266 SQHLNTLVVLNLRDCKSLKS-LPAGI--HLE----FLKELDLSGCSKLK-----RLPD-ISSAANIEEMFLNGTAIEEL- 331 (369)
Q Consensus 266 ~~~l~~L~~L~L~~n~~l~~-lP~~i--~L~----~L~~L~Ls~~~~l~-----~lP~-i~~L~~L~~L~Ls~n~l~~L- 331 (369)
+..+++|+.|+|++|. +.. .+..+ .+. +|++|+|++|. +. .+|. +..+++|++|+|++|.+...
T Consensus 52 l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 129 (461)
T 1z7x_W 52 LRVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAG 129 (461)
T ss_dssp HHTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHH
T ss_pred HHhCCCcCEEeCCCCc-CChHHHHHHHHHHhhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCcCchHH
Confidence 4557899999999994 543 23333 355 79999999965 54 4676 89999999999999998732
Q ss_pred Cccc-----cCCCCCcEEecccCCCCC----cCCccccCCCCCCCC
Q 017543 332 PSSI-----ECLYKLLHLDLEDCKSLK----SLPSGLFLCRNKCRI 368 (369)
Q Consensus 332 P~~i-----~~L~~L~~L~Ls~n~~l~----~lP~~i~~L~~L~~L 368 (369)
+..+ ..+.+|++|++++|.+.. .+|..+..+++|++|
T Consensus 130 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 175 (461)
T 1z7x_W 130 LQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKEL 175 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEE
Confidence 3333 236789999999998444 356667777888765
No 147
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.80 E-value=1.6e-06 Score=85.20 Aligned_cols=99 Identities=19% Similarity=0.215 Sum_probs=54.9
Q ss_pred ccceeeEEeecCCCCCCCc-----Cccc--cccCccEEEccCCCCCCc-----CCC-CCCCCCCCEEEeecCCCcc----
Q 017543 268 HLNTLVVLNLRDCKSLKSL-----PAGI--HLEFLKELDLSGCSKLKR-----LPD-ISSAANIEEMFLNGTAIEE---- 330 (369)
Q Consensus 268 ~l~~L~~L~L~~n~~l~~l-----P~~i--~L~~L~~L~Ls~~~~l~~-----lP~-i~~L~~L~~L~Ls~n~l~~---- 330 (369)
.+++|+.|++++| .++.. ...+ .+++|++|+|++| .++. +|. +.++++|++|+|++|.+..
T Consensus 225 ~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 302 (461)
T 1z7x_W 225 SKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302 (461)
T ss_dssp HCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred hCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH
Confidence 4566666777666 34321 1222 3566777777764 3444 454 5556677777777776652
Q ss_pred -cCcccc-CCCCCcEEecccCCCCCc----CCccccCCCCCCCC
Q 017543 331 -LPSSIE-CLYKLLHLDLEDCKSLKS----LPSGLFLCRNKCRI 368 (369)
Q Consensus 331 -LP~~i~-~L~~L~~L~Ls~n~~l~~----lP~~i~~L~~L~~L 368 (369)
++..+. ..++|++|+|++|.+... +|..+..+++|+.|
T Consensus 303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 346 (461)
T 1z7x_W 303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLEL 346 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEE
T ss_pred HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEE
Confidence 222221 225677777777763332 45566666666654
No 148
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.69 E-value=5.2e-06 Score=84.23 Aligned_cols=98 Identities=19% Similarity=0.162 Sum_probs=52.1
Q ss_pred ccceeeEEeecCCCCCC-----CcCccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCC----cccCcccc
Q 017543 268 HLNTLVVLNLRDCKSLK-----SLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAI----EELPSSIE 336 (369)
Q Consensus 268 ~l~~L~~L~L~~n~~l~-----~lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l----~~LP~~i~ 336 (369)
.+++|+.|++++|. +. .++..+ .+++|+.|+|++| .+..+|. ++++++|++|+++.+.. ...+..++
T Consensus 190 ~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 190 HNTSLEVLNFYMTE-FAKISPKDLETIARNCRSLVSVKVGDF-EILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HCCCCCEEECTTCC-CSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred cCCCccEEEeeccC-CCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 34555566665552 32 222223 4556666666653 3444554 55556666666653211 13344555
Q ss_pred CCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543 337 CLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI 368 (369)
Q Consensus 337 ~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L 368 (369)
.+++|+.|+++++. ...+|..+..+++|++|
T Consensus 268 ~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L 298 (592)
T 3ogk_B 268 FPRKLCRLGLSYMG-PNEMPILFPFAAQIRKL 298 (592)
T ss_dssp CCTTCCEEEETTCC-TTTGGGGGGGGGGCCEE
T ss_pred ccccccccCccccc-hhHHHHHHhhcCCCcEE
Confidence 66666666666543 56677766666676655
No 149
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.67 E-value=3.3e-06 Score=85.66 Aligned_cols=98 Identities=21% Similarity=0.246 Sum_probs=47.0
Q ss_pred cceeeEEeecCCCCCCC--cCccc-cccCccEEEccCCCCCCc-----CCC-CCCCCCCCEEEeecCC--Cc--ccCccc
Q 017543 269 LNTLVVLNLRDCKSLKS--LPAGI-HLEFLKELDLSGCSKLKR-----LPD-ISSAANIEEMFLNGTA--IE--ELPSSI 335 (369)
Q Consensus 269 l~~L~~L~L~~n~~l~~--lP~~i-~L~~L~~L~Ls~~~~l~~-----lP~-i~~L~~L~~L~Ls~n~--l~--~LP~~i 335 (369)
+++|+.|+|++|..++. ++... .+++|++|+|++|. +.. ++. ...+++|+.|+|++|. +. .++.-+
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~ 207 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLV 207 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHH
T ss_pred CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHH
Confidence 45666666666533332 33333 45666666666543 221 222 2355566666666554 21 222223
Q ss_pred cCCCCCcEEecccCCCCCcCCccccCCCCCCC
Q 017543 336 ECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCR 367 (369)
Q Consensus 336 ~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~ 367 (369)
.++++|++|+|++|..++.+|..+..+++|++
T Consensus 208 ~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~ 239 (594)
T 2p1m_B 208 TRCPNLKSLKLNRAVPLEKLATLLQRAPQLEE 239 (594)
T ss_dssp HHCTTCCEEECCTTSCHHHHHHHHHHCTTCSE
T ss_pred HhCCCCcEEecCCCCcHHHHHHHHhcCCcceE
Confidence 34566666666655334444444444444443
No 150
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.66 E-value=2.2e-05 Score=79.57 Aligned_cols=101 Identities=14% Similarity=0.036 Sum_probs=62.1
Q ss_pred cccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCC---CcCCC-CCCCCCCCEEEeecCCCcccCccccCCCCC
Q 017543 267 QHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKL---KRLPD-ISSAANIEEMFLNGTAIEELPSSIECLYKL 341 (369)
Q Consensus 267 ~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l---~~lP~-i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L 341 (369)
..+++|+.|++++| .+..+|..+ .+++|+.|+++.++.. ...+. ++.+++|+.|+++++....+|..+..+++|
T Consensus 217 ~~~~~L~~L~L~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L 295 (592)
T 3ogk_B 217 RNCRSLVSVKVGDF-EILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQI 295 (592)
T ss_dssp HHCTTCCEEECSSC-BGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGC
T ss_pred hhCCCCcEEeccCc-cHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCC
Confidence 35677888888877 466677666 7777787777753332 22233 666777777777766666677766777777
Q ss_pred cEEecccCCCCCc-CCccccCCCCCCCC
Q 017543 342 LHLDLEDCKSLKS-LPSGLFLCRNKCRI 368 (369)
Q Consensus 342 ~~L~Ls~n~~l~~-lP~~i~~L~~L~~L 368 (369)
++|+|++|.+... ++.-+..+++|++|
T Consensus 296 ~~L~Ls~~~l~~~~~~~~~~~~~~L~~L 323 (592)
T 3ogk_B 296 RKLDLLYALLETEDHCTLIQKCPNLEVL 323 (592)
T ss_dssp CEEEETTCCCCHHHHHHHHTTCTTCCEE
T ss_pred cEEecCCCcCCHHHHHHHHHhCcCCCEE
Confidence 7777777662221 11224455555544
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.60 E-value=2.1e-05 Score=67.97 Aligned_cols=83 Identities=16% Similarity=0.251 Sum_probs=62.4
Q ss_pred ceeeEEeecCCCCCCCcC-ccc-cccCccEEEccCCCCCCcCC--CCCCC----CCCCEEEeecC-CCc--ccCccccCC
Q 017543 270 NTLVVLNLRDCKSLKSLP-AGI-HLEFLKELDLSGCSKLKRLP--DISSA----ANIEEMFLNGT-AIE--ELPSSIECL 338 (369)
Q Consensus 270 ~~L~~L~L~~n~~l~~lP-~~i-~L~~L~~L~Ls~~~~l~~lP--~i~~L----~~L~~L~Ls~n-~l~--~LP~~i~~L 338 (369)
-.|+.|++++|. +.... ..+ .+++|+.|+|++|..++.-- .|..+ ++|++|+|++| +|+ .+ ..+.++
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHF 138 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGC
T ss_pred ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcC
Confidence 369999999995 54321 223 79999999999998776533 25554 47999999998 587 34 346789
Q ss_pred CCCcEEecccCCCCCc
Q 017543 339 YKLLHLDLEDCKSLKS 354 (369)
Q Consensus 339 ~~L~~L~Ls~n~~l~~ 354 (369)
++|++|+|++|..++.
T Consensus 139 ~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TTCCEEEEESCTTCCC
T ss_pred CCCCEEECCCCCCCCc
Confidence 9999999999985543
No 152
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.44 E-value=1.7e-05 Score=76.72 Aligned_cols=100 Identities=15% Similarity=0.069 Sum_probs=67.2
Q ss_pred cccceeeEEeecCCCCCCCcC-----ccc--cccCccEEEccCCCCCCc-----CCC-CCCCCCCCEEEeecCCCc----
Q 017543 267 QHLNTLVVLNLRDCKSLKSLP-----AGI--HLEFLKELDLSGCSKLKR-----LPD-ISSAANIEEMFLNGTAIE---- 329 (369)
Q Consensus 267 ~~l~~L~~L~L~~n~~l~~lP-----~~i--~L~~L~~L~Ls~~~~l~~-----lP~-i~~L~~L~~L~Ls~n~l~---- 329 (369)
..+.+|+.|+|++| .++... ..+ ..++|+.|+|++| .++. ++. +..+++|++|+|++|.|.
T Consensus 123 ~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~ 200 (372)
T 3un9_A 123 PVFLRARKLGLQLN-SLGPEACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGL 200 (372)
T ss_dssp HHHHTEEEEECCSS-CCCHHHHHHHHHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHH
T ss_pred HHHHhccHhhcCCC-CCCHHHHHHHHHHHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHH
Confidence 34667888999888 454322 122 2467899999985 4543 333 567888999999999886
Q ss_pred -ccCccccCCCCCcEEecccCCCCC----cCCccccCCCCCCCC
Q 017543 330 -ELPSSIECLYKLLHLDLEDCKSLK----SLPSGLFLCRNKCRI 368 (369)
Q Consensus 330 -~LP~~i~~L~~L~~L~Ls~n~~l~----~lP~~i~~L~~L~~L 368 (369)
.|+..+...++|++|+|++|.+.. .++..+...++|+.|
T Consensus 201 ~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L 244 (372)
T 3un9_A 201 ELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELL 244 (372)
T ss_dssp HHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEE
T ss_pred HHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEE
Confidence 356677788889999999988322 244444455666654
No 153
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.41 E-value=2.6e-05 Score=75.41 Aligned_cols=81 Identities=17% Similarity=0.139 Sum_probs=64.0
Q ss_pred cceeeEEeecCCCCCCC-----cCccc-cccCccEEEccCCCCCCc-----CCC-CCCCCCCCEEEeecCCCc-----cc
Q 017543 269 LNTLVVLNLRDCKSLKS-----LPAGI-HLEFLKELDLSGCSKLKR-----LPD-ISSAANIEEMFLNGTAIE-----EL 331 (369)
Q Consensus 269 l~~L~~L~L~~n~~l~~-----lP~~i-~L~~L~~L~Ls~~~~l~~-----lP~-i~~L~~L~~L~Ls~n~l~-----~L 331 (369)
..+|+.|+|++| .++. ++..+ .+++|++|+|++|. ++. +++ +..+++|+.|+|++|.|. .+
T Consensus 154 ~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 154 QCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp TCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred CCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 467999999999 4643 55555 68899999999954 553 344 677789999999999997 35
Q ss_pred CccccCCCCCcEEecccCCC
Q 017543 332 PSSIECLYKLLHLDLEDCKS 351 (369)
Q Consensus 332 P~~i~~L~~L~~L~Ls~n~~ 351 (369)
+..+...++|++|+|++|.+
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSC
T ss_pred HHHHHhCCCCCEEeccCCCC
Confidence 56677789999999999983
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.38 E-value=2e-05 Score=68.43 Aligned_cols=81 Identities=12% Similarity=0.165 Sum_probs=54.0
Q ss_pred ccceeeEEeecCCCCCCC-----cCccc-cccCccEEEccCCCCCCc-----CCC-CCCCCCCCEEEe--ecCCCcc---
Q 017543 268 HLNTLVVLNLRDCKSLKS-----LPAGI-HLEFLKELDLSGCSKLKR-----LPD-ISSAANIEEMFL--NGTAIEE--- 330 (369)
Q Consensus 268 ~l~~L~~L~L~~n~~l~~-----lP~~i-~L~~L~~L~Ls~~~~l~~-----lP~-i~~L~~L~~L~L--s~n~l~~--- 330 (369)
..++|+.|+|++|. ++. +...+ ..++|++|+|++| .++. +.. +...++|++|+| ++|.|..
T Consensus 63 ~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~ 140 (185)
T 1io0_A 63 TNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE 140 (185)
T ss_dssp TCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH
T ss_pred hCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHH
Confidence 34678888888883 543 33333 4567888888874 4543 333 566677888888 7777762
Q ss_pred --cCccccCCCCCcEEecccCC
Q 017543 331 --LPSSIECLYKLLHLDLEDCK 350 (369)
Q Consensus 331 --LP~~i~~L~~L~~L~Ls~n~ 350 (369)
|...+...++|++|+|++|.
T Consensus 141 ~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 141 MEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHhCCCcCEEeccCCC
Confidence 55556667788888888776
No 155
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.34 E-value=1.5e-05 Score=80.82 Aligned_cols=99 Identities=17% Similarity=0.226 Sum_probs=70.1
Q ss_pred ccceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCc--CCC-CCCCCCCCEEEeecCCCcc-----cCccccC
Q 017543 268 HLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKR--LPD-ISSAANIEEMFLNGTAIEE-----LPSSIEC 337 (369)
Q Consensus 268 ~l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~--lP~-i~~L~~L~~L~Ls~n~l~~-----LP~~i~~ 337 (369)
.+++|+.|+|++|......+..+ .+++|+.|+|++|..++. ++. +.++++|++|+|++|.+.. ++.-...
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 46789999999985222334444 589999999999866665 555 5589999999999998653 3333457
Q ss_pred CCCCcEEecccCCCCCcCC-----ccccCCCCCCCC
Q 017543 338 LYKLLHLDLEDCKSLKSLP-----SGLFLCRNKCRI 368 (369)
Q Consensus 338 L~~L~~L~Ls~n~~l~~lP-----~~i~~L~~L~~L 368 (369)
+++|++|++++|. +.++ .-+.++++|++|
T Consensus 183 ~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L 216 (594)
T 2p1m_B 183 YTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSL 216 (594)
T ss_dssp CCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEE
T ss_pred CCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEE
Confidence 7899999999886 2233 223445777665
No 156
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.14 E-value=0.00057 Score=64.24 Aligned_cols=86 Identities=15% Similarity=0.130 Sum_probs=72.8
Q ss_pred cccCCCCCCCccccceeeEEeecCCCCCCCcCccc--cccCcc-EEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCcc
Q 017543 256 IFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLK-ELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEE 330 (369)
Q Consensus 256 ~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i--~L~~L~-~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~ 330 (369)
.+..++... +..+.+|+.|+|.+| +..++... .+.+|+ .|+|.+ .++.+++ +.+|++|+.|+|++|.++.
T Consensus 237 ~i~~I~~~a-F~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~~ 311 (329)
T 3sb4_A 237 NATTIPDFT-FAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDKITT 311 (329)
T ss_dssp CCCEECTTT-TTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSCCCE
T ss_pred CcceecHhh-hhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCccCc
Confidence 356666544 567999999999997 78888776 899999 999996 6888885 9999999999999999999
Q ss_pred cCc-cccCCCCCcEEec
Q 017543 331 LPS-SIECLYKLLHLDL 346 (369)
Q Consensus 331 LP~-~i~~L~~L~~L~L 346 (369)
++. .+.++++|+.|+.
T Consensus 312 I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 312 LGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ECTTTTCTTCCCCEEEC
T ss_pred cchhhhcCCcchhhhcc
Confidence 987 4789999998864
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.98 E-value=0.00015 Score=62.82 Aligned_cols=99 Identities=12% Similarity=0.208 Sum_probs=69.6
Q ss_pred ccceeeEEeecCCCCCCC-----cCccc-cccCccEEEccCCCCCCc-----CCC-CCCCCCCCEEEeecCCCcc-----
Q 017543 268 HLNTLVVLNLRDCKSLKS-----LPAGI-HLEFLKELDLSGCSKLKR-----LPD-ISSAANIEEMFLNGTAIEE----- 330 (369)
Q Consensus 268 ~l~~L~~L~L~~n~~l~~-----lP~~i-~L~~L~~L~Ls~~~~l~~-----lP~-i~~L~~L~~L~Ls~n~l~~----- 330 (369)
..+.|+.|+|++|+.++. +...+ ..++|++|+|++|. ++. +.+ +...++|++|+|++|.|..
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 456789999999833543 34444 56899999999954 543 333 5566889999999999974
Q ss_pred cCccccCCCCCcEEec--ccCCCCCc-----CCccccCCCCCCCC
Q 017543 331 LPSSIECLYKLLHLDL--EDCKSLKS-----LPSGLFLCRNKCRI 368 (369)
Q Consensus 331 LP~~i~~L~~L~~L~L--s~n~~l~~-----lP~~i~~L~~L~~L 368 (369)
|...+...++|++|+| ++|. ++. |-..+...++|++|
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L 156 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKF 156 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEE
T ss_pred HHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEE
Confidence 6778888899999999 7787 432 33344444555544
No 158
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.78 E-value=0.00031 Score=67.60 Aligned_cols=59 Identities=12% Similarity=0.177 Sum_probs=30.3
Q ss_pred ccCccEEEccCCCCCCcCCC----CCCCCCCCEEEeecCCCcc-----cCccccCCCCCcEEecccCC
Q 017543 292 LEFLKELDLSGCSKLKRLPD----ISSAANIEEMFLNGTAIEE-----LPSSIECLYKLLHLDLEDCK 350 (369)
Q Consensus 292 L~~L~~L~Ls~~~~l~~lP~----i~~L~~L~~L~Ls~n~l~~-----LP~~i~~L~~L~~L~Ls~n~ 350 (369)
+++|++|+|++|......+. .+.+++|+.|+|+.|.|.. |+..+.++++|+.|+|++|.
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 45666666655432211111 2245566666666665542 44444555666666666554
No 159
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.76 E-value=0.0021 Score=52.42 Aligned_cols=52 Identities=23% Similarity=0.345 Sum_probs=35.9
Q ss_pred EEeecCCCCCC--CcCccccccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCC
Q 017543 274 VLNLRDCKSLK--SLPAGIHLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAI 328 (369)
Q Consensus 274 ~L~L~~n~~l~--~lP~~i~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l 328 (369)
.++.+++ .+. .+|..+ -.+|+.|+|++ |.|..||. +..+++|+.|+|++|.+
T Consensus 12 ~v~Cs~~-~L~~~~vP~~l-p~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRR-GLTWASLPTAF-PVDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSS-CCCTTTSCSCC-CTTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCC-CCccccCCCCC-CcCCCEEECCC-CcCCccChhhhhhccccCEEEecCCCe
Confidence 5666666 466 777654 23477788887 66777775 67777888888887755
No 160
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.68 E-value=0.00033 Score=67.36 Aligned_cols=99 Identities=14% Similarity=0.055 Sum_probs=64.2
Q ss_pred cceeeEEeecCCCCCCC-cCccc---cccCccEEEccCCC-------CCCcCCC-C--CCCCCCCEEEeecCCCc-ccCc
Q 017543 269 LNTLVVLNLRDCKSLKS-LPAGI---HLEFLKELDLSGCS-------KLKRLPD-I--SSAANIEEMFLNGTAIE-ELPS 333 (369)
Q Consensus 269 l~~L~~L~L~~n~~l~~-lP~~i---~L~~L~~L~Ls~~~-------~l~~lP~-i--~~L~~L~~L~Ls~n~l~-~LP~ 333 (369)
+++|+.|.|..|. +.. ....+ .+++|+.|+|+.+. .+..+.. + +.+++|++|+|.+|.+. ..+.
T Consensus 192 ~~~L~~L~L~~~~-l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~ 270 (362)
T 2ra8_A 192 RPNLKSLEIISGG-LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVE 270 (362)
T ss_dssp CTTCSEEEEECSB-CCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHH
T ss_pred CCCCcEEEEecCC-CChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHH
Confidence 7889999998773 321 11112 58899999986321 1222222 2 35899999999999886 3333
Q ss_pred cc---cCCCCCcEEecccCCCCC----cCCccccCCCCCCCC
Q 017543 334 SI---ECLYKLLHLDLEDCKSLK----SLPSGLFLCRNKCRI 368 (369)
Q Consensus 334 ~i---~~L~~L~~L~Ls~n~~l~----~lP~~i~~L~~L~~L 368 (369)
.+ +.+++|++|+|+.|.+.. .|+..+..+++|+.|
T Consensus 271 ~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L 312 (362)
T 2ra8_A 271 MFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFI 312 (362)
T ss_dssp HHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEE
T ss_pred HHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEE
Confidence 33 368899999999987332 255555556666654
No 161
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.52 E-value=0.00096 Score=57.45 Aligned_cols=82 Identities=17% Similarity=0.289 Sum_probs=55.7
Q ss_pred CcCccc-cccCccEEEccCCCCCCcC--CCCCCCCCCCEEEeecC-CCccc-CccccCC----CCCcEEecccCCCCCc-
Q 017543 285 SLPAGI-HLEFLKELDLSGCSKLKRL--PDISSAANIEEMFLNGT-AIEEL-PSSIECL----YKLLHLDLEDCKSLKS- 354 (369)
Q Consensus 285 ~lP~~i-~L~~L~~L~Ls~~~~l~~l--P~i~~L~~L~~L~Ls~n-~l~~L-P~~i~~L----~~L~~L~Ls~n~~l~~- 354 (369)
.+|... .-..|+.|||++|. ++.. ..+..|++|+.|+|++| .|+.- =..|..+ ++|++|+|++|..++.
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred cCCcccCCCceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence 346544 44579999999987 5443 33789999999999999 57621 1235554 3799999999975442
Q ss_pred -CCccccCCCCCCCC
Q 017543 355 -LPSGLFLCRNKCRI 368 (369)
Q Consensus 355 -lP~~i~~L~~L~~L 368 (369)
+ ..+..+++|++|
T Consensus 131 Gl-~~L~~~~~L~~L 144 (176)
T 3e4g_A 131 GI-IALHHFRNLKYL 144 (176)
T ss_dssp HH-HHGGGCTTCCEE
T ss_pred HH-HHHhcCCCCCEE
Confidence 1 234556666665
No 162
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.27 E-value=0.0093 Score=57.89 Aligned_cols=87 Identities=6% Similarity=0.081 Sum_probs=63.3
Q ss_pred ccccceeeEEeecCCCCCC-----CcCccc--cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCcccCcc-c
Q 017543 266 SQHLNTLVVLNLRDCKSLK-----SLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPSS-I 335 (369)
Q Consensus 266 ~~~l~~L~~L~L~~n~~l~-----~lP~~i--~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~LP~~-i 335 (369)
+..+.+|+.+.+.++ .+. .++... .+.+|+.+.|.+ .+..++. +.+|.+|+.|.|.. .++.++.. +
T Consensus 267 F~~c~~L~~l~l~~~-~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~-~l~~I~~~aF 342 (401)
T 4fdw_A 267 FYYCPELAEVTTYGS-TFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPA-NVTQINFSAF 342 (401)
T ss_dssp TTTCTTCCEEEEESS-CCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECT-TCCEECTTSS
T ss_pred hhCCCCCCEEEeCCc-cccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECc-cccEEcHHhC
Confidence 456788888888776 233 455544 788889888884 3778885 88889999999954 47777654 6
Q ss_pred cCCCCCcEEecccCCCCCcCCcc
Q 017543 336 ECLYKLLHLDLEDCKSLKSLPSG 358 (369)
Q Consensus 336 ~~L~~L~~L~Ls~n~~l~~lP~~ 358 (369)
.++ +|+.|++.+|. ...++..
T Consensus 343 ~~~-~L~~l~l~~n~-~~~l~~~ 363 (401)
T 4fdw_A 343 NNT-GIKEVKVEGTT-PPQVFEK 363 (401)
T ss_dssp SSS-CCCEEEECCSS-CCBCCCS
T ss_pred CCC-CCCEEEEcCCC-Ccccccc
Confidence 777 89999999887 4445443
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.74 E-value=0.015 Score=47.22 Aligned_cols=51 Identities=24% Similarity=0.389 Sum_probs=31.3
Q ss_pred EEEccCCCCCC--cCCC-CCCCCCCCEEEeecCCCcccCcc-ccCCCCCcEEecccCC
Q 017543 297 ELDLSGCSKLK--RLPD-ISSAANIEEMFLNGTAIEELPSS-IECLYKLLHLDLEDCK 350 (369)
Q Consensus 297 ~L~Ls~~~~l~--~lP~-i~~L~~L~~L~Ls~n~l~~LP~~-i~~L~~L~~L~Ls~n~ 350 (369)
.++.++ +.++ .+|. +. .+|++|+|++|.|+.||.. +..|++|++|+|.+|+
T Consensus 12 ~v~Cs~-~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGR-RGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCS-SCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCC-CCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 455555 4455 6664 33 3566777777777777665 3566677777776665
No 164
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.68 E-value=0.027 Score=54.60 Aligned_cols=90 Identities=23% Similarity=0.289 Sum_probs=57.7
Q ss_pred eeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCcccCcc-ccCCCCCcEEe
Q 017543 271 TLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPSS-IECLYKLLHLD 345 (369)
Q Consensus 271 ~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~LP~~-i~~L~~L~~L~ 345 (369)
+|+.+.+.++ +..++... .+.+|+.++|.+ +.+..+|. +. +.+|+.+.|.. .++.|+.. +.++.+|+.|+
T Consensus 158 ~L~~i~lp~~--l~~I~~~aF~~c~~L~~l~l~~-n~l~~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~ 232 (401)
T 4fdw_A 158 TVQEIVFPST--LEQLKEDIFYYCYNLKKADLSK-TKITKLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIE 232 (401)
T ss_dssp CCCEEECCTT--CCEECSSTTTTCTTCCEEECTT-SCCSEECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEE
T ss_pred CceEEEeCCC--ccEehHHHhhCcccCCeeecCC-CcceEechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEe
Confidence 5777777653 56666544 677777887776 56777775 44 57777777763 46666654 56777788888
Q ss_pred cccCCCCCcCCccccCCCCCCC
Q 017543 346 LEDCKSLKSLPSGLFLCRNKCR 367 (369)
Q Consensus 346 Ls~n~~l~~lP~~i~~L~~L~~ 367 (369)
|.++ +..|+...+.-.+|+.
T Consensus 233 l~~~--l~~I~~~aF~~~~L~~ 252 (401)
T 4fdw_A 233 IPEN--VSTIGQEAFRESGITT 252 (401)
T ss_dssp CCTT--CCEECTTTTTTCCCSE
T ss_pred cCCC--ccCccccccccCCccE
Confidence 7653 5566655444344443
No 165
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.66 E-value=0.011 Score=56.75 Aligned_cols=97 Identities=11% Similarity=0.116 Sum_probs=73.7
Q ss_pred ccccceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCcccCcc-ccCCCC
Q 017543 266 SQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPSS-IECLYK 340 (369)
Q Consensus 266 ~~~l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~LP~~-i~~L~~ 340 (369)
+..+.+|+.+.+.++ +..++... .+.+|+.++|.+ .++.+++ +.+|.+|+.++|..+ ++.++.. +.++.+
T Consensus 293 F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~ 367 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCIN 367 (394)
T ss_dssp TTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTT
T ss_pred ccccccccccccccc--cceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCC
Confidence 345677888888765 66776654 788999999974 4788885 889999999999766 8888664 788999
Q ss_pred CcEEecccCCCCCcCCccccCCCCCCCCC
Q 017543 341 LLHLDLEDCKSLKSLPSGLFLCRNKCRIR 369 (369)
Q Consensus 341 L~~L~Ls~n~~l~~lP~~i~~L~~L~~L~ 369 (369)
|+.++|..+ +..+...+.++++|+.+|
T Consensus 368 L~~i~lp~~--~~~~~~~F~~c~~L~~IK 394 (394)
T 4fs7_A 368 LKKVELPKR--LEQYRYDFEDTTKFKWIK 394 (394)
T ss_dssp CCEEEEEGG--GGGGGGGBCTTCEEEEEC
T ss_pred CCEEEECCC--CEEhhheecCCCCCcEEC
Confidence 999999754 455667788888887654
No 166
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.20 E-value=0.06 Score=51.05 Aligned_cols=54 Identities=28% Similarity=0.388 Sum_probs=24.0
Q ss_pred cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCcccCcc-ccCCCCCcEEec
Q 017543 291 HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPSS-IECLYKLLHLDL 346 (369)
Q Consensus 291 ~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~LP~~-i~~L~~L~~L~L 346 (369)
.+.+|+.+.+.. .+..++. +..+.+|+.+.+.++.++.|+.. +.++.+|+.+.|
T Consensus 261 ~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~l 317 (379)
T 4h09_A 261 NCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTL 317 (379)
T ss_dssp TCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred eeehhccccccc--cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEc
Confidence 344444444432 2344443 44444555555444444444332 344444444444
No 167
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.05 E-value=0.088 Score=50.36 Aligned_cols=79 Identities=14% Similarity=0.317 Sum_probs=55.3
Q ss_pred cccceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCcccCcc-ccCCCCC
Q 017543 267 QHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPSS-IECLYKL 341 (369)
Q Consensus 267 ~~l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~LP~~-i~~L~~L 341 (369)
.++..|+.+.+... +..++... .+.+|+.+.|.. .++.+++ +.+|.+|+.+.|.. .++.++.. +.++.+|
T Consensus 285 ~~c~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~-sv~~I~~~aF~~C~~L 359 (394)
T 4gt6_A 285 MNCPALQDIEFSSR--ITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPS-SVTKIPESAFSNCTAL 359 (394)
T ss_dssp TTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECT-TCCBCCGGGGTTCTTC
T ss_pred ccccccccccCCCc--ccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECc-ccCEEhHhHhhCCCCC
Confidence 45666777777543 56666655 678888888875 3677775 77888888888854 47777654 6778888
Q ss_pred cEEecccCC
Q 017543 342 LHLDLEDCK 350 (369)
Q Consensus 342 ~~L~Ls~n~ 350 (369)
+.+++.++.
T Consensus 360 ~~i~~~~~~ 368 (394)
T 4gt6_A 360 NNIEYSGSR 368 (394)
T ss_dssp CEEEESSCH
T ss_pred CEEEECCce
Confidence 888887654
No 168
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=93.85 E-value=0.16 Score=48.44 Aligned_cols=96 Identities=15% Similarity=0.321 Sum_probs=72.1
Q ss_pred ccccceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCcccCcc-ccCCCC
Q 017543 266 SQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPSS-IECLYK 340 (369)
Q Consensus 266 ~~~l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~LP~~-i~~L~~ 340 (369)
+..+..|+.+.+.++ +..++... ++..|+.+.+. +.+..+++ +.++.+|+.++|.. .++.+... +..+.+
T Consensus 261 F~~c~~L~~i~lp~~--~~~I~~~aF~~c~~L~~i~l~--~~i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 261 FDSCAYLASVKMPDS--VVSIGTGAFMNCPALQDIEFS--SRITELPESVFAGCISLKSIDIPE-GITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTCSSCCEEECCTT--CCEECTTTTTTCTTCCEEECC--TTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTT
T ss_pred eeecccccEEecccc--cceecCcccccccccccccCC--CcccccCceeecCCCCcCEEEeCC-cccEehHhHhhCCCC
Confidence 345677888887665 34555544 78899999997 45888996 88999999999975 47777654 788999
Q ss_pred CcEEecccCCCCCcCCcc-ccCCCCCCCC
Q 017543 341 LLHLDLEDCKSLKSLPSG-LFLCRNKCRI 368 (369)
Q Consensus 341 L~~L~Ls~n~~l~~lP~~-i~~L~~L~~L 368 (369)
|+.+.|..+ +..|+.. +.++.+|+.+
T Consensus 336 L~~i~ip~s--v~~I~~~aF~~C~~L~~i 362 (394)
T 4gt6_A 336 LERIAIPSS--VTKIPESAFSNCTALNNI 362 (394)
T ss_dssp CCEEEECTT--CCBCCGGGGTTCTTCCEE
T ss_pred CCEEEECcc--cCEEhHhHhhCCCCCCEE
Confidence 999999643 6677754 5567777754
No 169
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=93.57 E-value=0.14 Score=48.44 Aligned_cols=78 Identities=15% Similarity=0.190 Sum_probs=59.9
Q ss_pred ccccceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCcccCcc-ccCCCC
Q 017543 266 SQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPSS-IECLYK 340 (369)
Q Consensus 266 ~~~l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~LP~~-i~~L~~ 340 (369)
+..+.+|..+.+..+ +..++... .+.+|+.+.+.+ +.++.+++ +.++.+|+.+.|.. .++.|+.. +.++.+
T Consensus 259 F~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~C~~ 334 (379)
T 4h09_A 259 LQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDN-SAIETLEPRVFMDCVKLSSVTLPT-ALKTIQVYAFKNCKA 334 (379)
T ss_dssp TTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECC-TTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTT
T ss_pred cceeehhcccccccc--ceeccccccccccccccccccc-cccceehhhhhcCCCCCCEEEcCc-cccEEHHHHhhCCCC
Confidence 345667777777654 66777655 789999999986 66888886 88999999999964 47778664 678888
Q ss_pred CcEEecc
Q 017543 341 LLHLDLE 347 (369)
Q Consensus 341 L~~L~Ls 347 (369)
|+.+.+.
T Consensus 335 L~~i~ip 341 (379)
T 4h09_A 335 LSTISYP 341 (379)
T ss_dssp CCCCCCC
T ss_pred CCEEEEC
Confidence 8888774
No 170
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=89.82 E-value=0.077 Score=46.29 Aligned_cols=33 Identities=6% Similarity=0.156 Sum_probs=14.3
Q ss_pred CCCCEEEeecCCCc-----ccCccccCCCCCcEEeccc
Q 017543 316 ANIEEMFLNGTAIE-----ELPSSIECLYKLLHLDLED 348 (369)
Q Consensus 316 ~~L~~L~Ls~n~l~-----~LP~~i~~L~~L~~L~Ls~ 348 (369)
+.|+.|+|++|.|. .|-+.+..-+.|++|+|++
T Consensus 98 ~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 98 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred CccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 34555555555443 1223333333455555543
No 171
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=88.53 E-value=0.47 Score=45.16 Aligned_cols=74 Identities=15% Similarity=0.201 Sum_probs=57.4
Q ss_pred ccccceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCcccCccccCCCCC
Q 017543 266 SQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPSSIECLYKL 341 (369)
Q Consensus 266 ~~~l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L 341 (369)
+.++.+|+.+++..+ +..++... ++.+|+.+.|.. + +..+++ +.+|.+|+.++|..+ ++.+...+.+.++|
T Consensus 316 F~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~-~-l~~I~~~aF~~C~~L~~i~lp~~-~~~~~~~F~~c~~L 390 (394)
T 4fs7_A 316 FESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPL-S-LRKIGANAFQGCINLKKVELPKR-LEQYRYDFEDTTKF 390 (394)
T ss_dssp TTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCT-T-CCEECTTTBTTCTTCCEEEEEGG-GGGGGGGBCTTCEE
T ss_pred hcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECc-c-ccEehHHHhhCCCCCCEEEECCC-CEEhhheecCCCCC
Confidence 457889999999764 77787655 799999999986 3 888886 899999999999754 55555567777777
Q ss_pred cEE
Q 017543 342 LHL 344 (369)
Q Consensus 342 ~~L 344 (369)
+.+
T Consensus 391 ~~I 393 (394)
T 4fs7_A 391 KWI 393 (394)
T ss_dssp EEE
T ss_pred cEE
Confidence 654
No 172
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=88.17 E-value=0.064 Score=42.30 Aligned_cols=58 Identities=9% Similarity=-0.017 Sum_probs=41.0
Q ss_pred CCeeecCCCccccCchHHHHHHHHhhCCcceEeccCcchhHHHHHHHHHcceeeEEeccCCccccccccccee
Q 017543 118 EGVPTAIPSEDTRDNFTSHLYSALSQKSIETFINRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLVK 190 (369)
Q Consensus 118 ~dvFis~~~~d~r~~F~~~L~~aL~~~gi~~~~~~G~~i~~~l~~~ie~S~i~ivv~S~~y~~S~~cl~ELv~ 190 (369)
|.+||||..+|....|++.| ...|+. +.+ +.|+.+.+.||..+.+...+.||.+|+..
T Consensus 5 ~~lFISh~~~d~~~~L~~~l----~~~~f~--------~~~---~~I~~~~~vIvL~G~~t~~s~wv~~EI~~ 62 (111)
T 1eiw_A 5 IRLYITEGEVEDYRVFLERL----EQSGLE--------WRP---ATPEDADAVIVLAGLWGTRRDEILGAVDL 62 (111)
T ss_dssp EEEEECCCCSHHHHHHHHHH----HHHCSC--------EEE---CCSSSCSEEEEEGGGTTTSHHHHHHHHHH
T ss_pred EEEEEecccHhHHHHHHHHH----hCCCCe--------eec---CccccCCEEEEEeCCCcCCChHHHHHHHH
Confidence 47999999999333333333 333332 111 66888999999999999999999999853
No 173
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=87.81 E-value=0.2 Score=43.64 Aligned_cols=58 Identities=28% Similarity=0.319 Sum_probs=38.0
Q ss_pred cCccEEEccCCCCCCc-----CCC-CCCCCCCCEEEeecCCCc-----ccCccccCCCCCcEEecccCC
Q 017543 293 EFLKELDLSGCSKLKR-----LPD-ISSAANIEEMFLNGTAIE-----ELPSSIECLYKLLHLDLEDCK 350 (369)
Q Consensus 293 ~~L~~L~Ls~~~~l~~-----lP~-i~~L~~L~~L~Ls~n~l~-----~LP~~i~~L~~L~~L~Ls~n~ 350 (369)
+.|+.|+|++|+.++. |-+ +..-+.|+.|+|++|.|. .|-+.+..-+.|++|+|++|.
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 3455555554323332 222 344467888999888886 455566677889999999988
No 174
>1pq1_B BCL2-like protein 11; BCL-XL/BIM, apoptosis; 1.65A {Mus musculus}
Probab=66.33 E-value=1.7 Score=25.49 Aligned_cols=8 Identities=38% Similarity=0.634 Sum_probs=6.8
Q ss_pred Hhhhhhhc
Q 017543 27 WMSQEVRE 34 (369)
Q Consensus 27 ~~~~~~~~ 34 (369)
|||||.|-
T Consensus 7 wIAQELRR 14 (33)
T 1pq1_B 7 RIAQELRR 14 (33)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 89999885
No 175
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=65.88 E-value=6.9 Score=33.31 Aligned_cols=52 Identities=15% Similarity=0.171 Sum_probs=40.4
Q ss_pred cchhHHHHHHHHHcceeeEEeccCCcccccccccceeeEEeeeccCeEEeeeeec
Q 017543 154 DEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLVKILQCKRVYGQIVLPVFYG 208 (369)
Q Consensus 154 ~~i~~~l~~~ie~S~i~ivv~S~~y~~S~~cl~ELv~i~~~~~~~~l~vlPiFy~ 208 (369)
..|-+.|.+.|..|+..|++++++...+.|-.+|+...++ +.+..|+-+.-+
T Consensus 67 ~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~Ai~---~~~~PII~Vy~~ 118 (189)
T 3hyn_A 67 KTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYGIG---TKGLPVIVIYPD 118 (189)
T ss_dssp TTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHHTT---TTCCCEEEEETT
T ss_pred HHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHHHH---hcCCcEEEEECC
Confidence 4566799999999999999999999999999888765541 345566555544
No 176
>3kj0_B BCL-2-like protein 11; BH3, apoptosis, protein-peptide complex, alternative splicing, cytoplasm, developmental protein, differentiation; 1.70A {Homo sapiens} PDB: 2pqk_B
Probab=59.66 E-value=2.7 Score=23.37 Aligned_cols=8 Identities=50% Similarity=1.178 Sum_probs=6.7
Q ss_pred Hhhhhhhc
Q 017543 27 WMSQEVRE 34 (369)
Q Consensus 27 ~~~~~~~~ 34 (369)
|+|||.|-
T Consensus 9 wiAqELRR 16 (27)
T 3kj0_B 9 WYAQELRR 16 (27)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88999875
No 177
>2wh6_B BCL-2-like protein 11; mitochondrion, early protein, transmembrane, viral protein,; 1.50A {Homo sapiens} PDB: 2v6q_B 2nl9_B 3fdl_B 3io8_B 2vm6_B 3io9_B 3d7v_B 3kj1_B 3kz0_C 3kj2_B
Probab=59.35 E-value=2.8 Score=23.20 Aligned_cols=8 Identities=50% Similarity=1.290 Sum_probs=6.5
Q ss_pred Hhhhhhhc
Q 017543 27 WMSQEVRE 34 (369)
Q Consensus 27 ~~~~~~~~ 34 (369)
|+|||.|-
T Consensus 7 ~iAqELRR 14 (26)
T 2wh6_B 7 WIAQELRR 14 (26)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888875
No 178
>1pd3_A Nonstructural protein NS2; influenza virus A, NEP/NS2, unknown function; 2.60A {Influenza a virus} SCOP: a.30.3.1
Probab=48.24 E-value=6.7 Score=25.92 Aligned_cols=15 Identities=47% Similarity=0.833 Sum_probs=12.5
Q ss_pred HHHHhHhhhhhhccC
Q 017543 22 EEELRWMSQEVRESS 36 (369)
Q Consensus 22 ~~~~~~~~~~~~~~~ 36 (369)
-||+||+-.|||-.-
T Consensus 15 FEeIRwlIeE~Rh~L 29 (58)
T 1pd3_A 15 FEEIRWLIEEVRHRL 29 (58)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHH
Confidence 489999999999743
No 179
>3ro3_B Minsc, peptide of protein inscuteable homolog; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=41.30 E-value=8.6 Score=20.39 Aligned_cols=8 Identities=38% Similarity=0.671 Sum_probs=6.2
Q ss_pred HHHHhHhh
Q 017543 22 EEELRWMS 29 (369)
Q Consensus 22 ~~~~~~~~ 29 (369)
-||||||.
T Consensus 14 meDLr~MT 21 (22)
T 3ro3_B 14 MEDLKLMT 21 (26)
T ss_pred HHHHHhhc
Confidence 48899984
No 180
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=22.78 E-value=65 Score=25.76 Aligned_cols=31 Identities=19% Similarity=0.339 Sum_probs=22.2
Q ss_pred CCeeecCCCccccCchHHHHHHHHhhCCcceEe
Q 017543 118 EGVPTAIPSEDTRDNFTSHLYSALSQKSIETFI 150 (369)
Q Consensus 118 ~dvFis~~~~d~r~~F~~~L~~aL~~~gi~~~~ 150 (369)
..||+|.++.| |...+. +...|...|+.++-
T Consensus 25 ~gvliSv~d~d-K~~l~~-~a~~l~~lGf~i~A 55 (143)
T 2yvq_A 25 KGILIGIQQSF-RPRFLG-VAEQLHNEGFKLFA 55 (143)
T ss_dssp SEEEEECCGGG-HHHHHH-HHHHHHTTTCEEEE
T ss_pred CCEEEEecccc-hHHHHH-HHHHHHHCCCEEEE
Confidence 34999998876 444443 67788888888775
No 181
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=21.14 E-value=54 Score=21.96 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=17.9
Q ss_pred CccccccCCCChHHHHhHhhhhhhcc
Q 017543 10 SLDTMARRPADPEEELRWMSQEVRES 35 (369)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (369)
+-..+.|+|..||||.+.+. -|..+
T Consensus 2 ss~~~~~~~WT~eED~~L~~-~v~~~ 26 (60)
T 1x41_A 2 SSGSSGDPSWTAQEEMALLE-AVMDC 26 (60)
T ss_dssp CCCCCCCSSSCHHHHHHHHH-HHHHT
T ss_pred CCCCCCCCCCCHHHHHHHHH-HHHHH
Confidence 44568899999999988763 34443
Done!