Query 017544
Match_columns 369
No_of_seqs 217 out of 1356
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 16:08:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017544.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017544hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mio_A DHBP synthase, 3,4-dihy 100.0 1.3E-74 4.3E-79 533.8 19.1 203 106-310 2-206 (206)
2 1k4i_A 3,4-dihydroxy-2-butanon 100.0 1.2E-74 4E-79 541.0 18.9 207 106-314 10-228 (233)
3 1tks_A 3,4-dihydroxy-2-butanon 100.0 2.2E-74 7.4E-79 531.2 17.7 199 107-307 4-203 (204)
4 1snn_A DHBP synthase, 3,4-dihy 100.0 5.4E-73 1.9E-77 529.2 13.9 198 108-308 1-222 (227)
5 1g57_A DHBP synthase, 3,4-dihy 100.0 1.4E-71 4.7E-76 517.6 20.0 204 107-312 12-215 (217)
6 1y0n_A Hypothetical UPF0270 pr 52.0 18 0.00063 28.3 4.5 33 109-144 38-70 (78)
7 3p04_A Uncharacterized BCR; SE 39.9 20 0.00069 28.4 3.1 21 107-127 14-34 (87)
8 3n2l_A OPRT, oprtase, orotate 32.5 93 0.0032 28.7 6.8 67 244-310 151-220 (238)
9 1js3_A DDC;, DOPA decarboxylas 32.1 62 0.0021 31.4 5.8 47 251-297 222-269 (486)
10 2jis_A Cysteine sulfinic acid 27.0 69 0.0024 31.6 5.2 46 252-297 247-293 (515)
11 4e1o_A HDC, histidine decarbox 24.6 82 0.0028 30.8 5.3 48 250-297 227-275 (481)
12 3k40_A Aromatic-L-amino-acid d 24.3 1E+02 0.0035 30.2 5.8 50 248-297 218-268 (475)
13 1tif_A IF3-N, translation init 21.7 67 0.0023 25.0 3.1 31 270-300 16-49 (78)
14 3vp6_A Glutamate decarboxylase 21.7 98 0.0034 30.7 5.2 48 250-297 234-282 (511)
15 3mjd_A Orotate phosphoribosylt 21.5 1.6E+02 0.0056 26.8 6.3 60 250-309 151-214 (232)
16 2okj_A Glutamate decarboxylase 21.2 87 0.003 30.6 4.6 46 252-297 233-279 (504)
17 3f9t_A TDC, L-tyrosine decarbo 20.4 69 0.0024 29.1 3.5 34 264-297 171-205 (397)
18 3ri6_A O-acetylhomoserine sulf 20.1 1.1E+02 0.0039 29.7 5.2 34 264-297 167-201 (430)
No 1
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A {Mycobacterium tuberculosis} SCOP: d.115.1.0 PDB: 3mgz_A 3mk5_A
Probab=100.00 E-value=1.3e-74 Score=533.79 Aligned_cols=203 Identities=53% Similarity=0.835 Sum_probs=188.6
Q ss_pred CCcccHHHHHHHHHCCcEEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhCCCcEEEecCHHHHHhcCCCcccccCCCc
Q 017544 106 KGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNE 185 (369)
Q Consensus 106 ~~~~~VerAi~aLr~G~pVvV~Dde~re~EgdLV~AAe~aT~e~vafm~~~~~Glvcvalt~~ra~~LgL~~m~~~~~n~ 185 (369)
+.|++|++||++||+|+||||+||++||||||||+|||.+|++.||||++|++|++|++|++++|++|+||+|+.. |+
T Consensus 2 ~~~~~ie~Ai~~lr~G~~Viv~DdedREnEgDli~aAe~~T~e~i~fm~~~~~GliC~~lt~~~a~~L~Lp~mv~~--n~ 79 (206)
T 3mio_A 2 TRLDSVERAVADIAAGKAVIVIDDEDRENEGDLIFAAEKATPEMVAFMVRYTSGYLCVPLDGAICDRLGLLPMYAV--NQ 79 (206)
T ss_dssp CCCCCHHHHHHHHHTTCCEEEESSSCTTCCCEEEEEGGGCCHHHHHHHHHHBCSCCEEEECHHHHHHTTCSCCC------
T ss_pred CCchhHHHHHHHHHCCCeEEEEeCCCCccceeEEEEhHhCCHHHHHHHHHhCCCceEEECCHHHHhhCCCCccccc--CC
Confidence 4578999999999999999999999999999999999999999999999999999999999999999999999987 88
Q ss_pred ccccCceEEEeeccCCCCCCCChhhhHHHHHHHhcCCCCCCCccCCCCcCccccccCCccccCChhHHHHHHHHHcCCCc
Q 017544 186 EKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEP 265 (369)
Q Consensus 186 ~~~~taftVsVDa~~g~~TGISa~DRA~TIr~LAdp~s~p~Df~rPGHvfPL~a~~gGvl~R~GhtEAAVdLarLAGL~P 265 (369)
+.++|+|||||||++|++|||||.||+.||++|++|+++|.||++|||||||++++|||++|+|||||||||||||||.|
T Consensus 80 ~~~~taftvsvda~~g~tTGISA~DRa~Ti~~ladp~~~p~Df~rPGHvfPL~A~~gGvl~R~GhTEaavdLarlAGl~P 159 (206)
T 3mio_A 80 DKHGTAYTVTVDARNGIGTGISASDRATTMRLLADPTSVADDFTRPGHVVPLRAKDGGVLRRPGHTEAAVDLARMAGLQP 159 (206)
T ss_dssp -------CCCEEESSSCSSSCSHHHHHHHHHHHHCTTCCGGGEEEEEEEEEEECCTTGGGTCCCHHHHHHHHHHHTTSCS
T ss_pred CCCCCCeEEEEecCCCCCCCcCHHHHHHHHHHHhCCCCCHHHhCCCCCceeEeeCCCCcccCCChHHHHHHHHHHcCCCc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEE--eCCCCCcCChhHHHHHHHhCCCeEEeHHHHHHHHHhcc
Q 017544 266 VAVLCEI--VDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRD 310 (369)
Q Consensus 266 aaVi~el--~~~dG~ma~~~~l~~fA~~~~L~ivsi~DLi~yr~~~e 310 (369)
++||||| +++||+|++++++.+||++|+||+|+|+||++||+++|
T Consensus 160 a~vicEiv~~~~dG~mar~~~l~~fA~~h~l~~iti~dli~yr~~~e 206 (206)
T 3mio_A 160 AGAICEIVSQKDEGSMAHTDELRVFADEHGLALITIADLIEWRRKHE 206 (206)
T ss_dssp BEEEEEBBCSSSTTSBCCHHHHHHHHHHHTCEEEEHHHHHHHHHHTC
T ss_pred eEEEEEEeeeCCCCCcCCHHHHHHHHHHcCCcEEEHHHHHHHHHhcC
Confidence 9999999 99999999999999999999999999999999998764
No 2
>1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesi antimicrobial target, structure-based design, isomerase; 0.98A {Magnaporthe grisea} SCOP: d.115.1.2 PDB: 1k49_A 1k4l_A 1k4o_A 1k4p_A
Probab=100.00 E-value=1.2e-74 Score=540.98 Aligned_cols=207 Identities=48% Similarity=0.739 Sum_probs=200.9
Q ss_pred CCcccHHHHHHHHHCCcEEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhCCCcEEEecCHHHHHhcCCCcccccCCCc
Q 017544 106 KGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNE 185 (369)
Q Consensus 106 ~~~~~VerAi~aLr~G~pVvV~Dde~re~EgdLV~AAe~aT~e~vafm~~~~~Glvcvalt~~ra~~LgL~~m~~~~~n~ 185 (369)
+.|++|++||++||+|++|||+||++||||||||+|||.+|++.||||++|++|+||++|++++|++|+||+|+.. |+
T Consensus 10 ~~~~~ie~Ai~alr~G~~Viv~DdedREnEgDLi~aAe~~T~e~i~fm~r~~~GliC~~lt~e~~~~L~Lp~Mv~~--n~ 87 (233)
T 1k4i_A 10 SNFDAIPDVIQAFKNGEFVVVLDDPSRENEADLIIAAESVTTEQMAFMVRHSSGLICAPLTPERTTALDLPQMVTH--NA 87 (233)
T ss_dssp --CCCHHHHHHHHHTTCCEEEECCTTTTCCEEEEEEGGGCCHHHHHHHHHHBCSCCEEEECHHHHHHTTCCBSCSS--CC
T ss_pred CchhHHHHHHHHHHCCCeEEEEeCCCCCcceeEEEEhhhCCHHHHHHHHHcCCCCEEEEcCHHHHhhCCCcccccc--cC
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999999987 88
Q ss_pred ccccCceEEEeeccC-CCCCCCChhhhHHHHHHHhcCCCCCCCccCCCCcCccccccCCccccCChhHHHHHHHHHcCCC
Q 017544 186 EKLCTAFTVSVDAKY-GTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLE 264 (369)
Q Consensus 186 ~~~~taftVsVDa~~-g~~TGISa~DRA~TIr~LAdp~s~p~Df~rPGHvfPL~a~~gGvl~R~GhtEAAVdLarLAGL~ 264 (369)
++++|+|||||||++ |++|||||.||+.||++|++|+++|.||++|||||||++++|||++|+|||||||||||||||.
T Consensus 88 ~~~~TaFTVsVda~~~g~tTGISA~DRa~Tir~la~~~~~p~df~rPGHvfPL~A~~GGVl~R~GHTEAaVDLarLAGl~ 167 (233)
T 1k4i_A 88 DPRGTAYTVSVDAEHPSTTTGISAHDRALACRMLAAPDAQPSHFRRPGHVFPLRAVAGGVRARRGHTEAGVELCRLAGKR 167 (233)
T ss_dssp CSSCCCBBCCEEECSTTCSSSCSHHHHHHHHHHHHCTTCCGGGEEEEEEEEEEECCTTHHHHCCSHHHHHHHHHHHTTCC
T ss_pred CCCCCCeEEEEEcccCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCccceeeecCCCeeccCChHHHHHHHHHHcCCC
Confidence 889999999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEEeCC-----------CCCcCChhHHHHHHHhCCCeEEeHHHHHHHHHhcccchh
Q 017544 265 PVAVLCEIVDD-----------DGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVE 314 (369)
Q Consensus 265 PaaVi~el~~~-----------dG~ma~~~~l~~fA~~~~L~ivsi~DLi~yr~~~e~lV~ 314 (369)
|++|||||+++ ||+|+|++++.+||++|+||+++|+||++||+++|++|+
T Consensus 168 PagVicEi~~~~~~~~~~~~~~dG~mar~~~l~~fA~~h~L~iitI~dLi~yr~~~e~~v~ 228 (233)
T 1k4i_A 168 PVAVISEIVDDGQEVEGRAVRAAPGMLRGDECVAFARRWGLKVCTIEDMIAHVEKTEGKLE 228 (233)
T ss_dssp SBEEEEEBEECCEECTTSSCEESCEECCHHHHHHHHHHTTCEEEEHHHHHHHHHHHHCCC-
T ss_pred ceEEEEEeCCCcccccccccCCCCCcCCHHHHHHHHHHcCCcEEEHHHHHHHHHhcCCeec
Confidence 99999999999 999999999999999999999999999999999998774
No 3
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Probab=100.00 E-value=2.2e-74 Score=531.22 Aligned_cols=199 Identities=51% Similarity=0.819 Sum_probs=190.1
Q ss_pred CcccHHHHHHHHHCCcEEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhCCCcEEEecCHHHHHhcCCCcccccCCCcc
Q 017544 107 GFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEE 186 (369)
Q Consensus 107 ~~~~VerAi~aLr~G~pVvV~Dde~re~EgdLV~AAe~aT~e~vafm~~~~~Glvcvalt~~ra~~LgL~~m~~~~~n~~ 186 (369)
.|++||+||++||+|+||||+||++||||||||+|||.+|++.||||++|++|++|++|++++|++|+||+|+.. |++
T Consensus 4 ~~~~ie~Ai~~lr~G~~Viv~DdedREnEgDli~aAe~~T~e~i~fm~~~~~GliC~~lt~~~~~~L~Lp~mv~~--n~~ 81 (204)
T 1tks_A 4 IFTPIEEALEAYKNGEFLIVMDDEDRENEGDLIMAAELITQEKMAFLVRYSSGYVCVPLSEERANQLELPPMLAN--RSD 81 (204)
T ss_dssp CSCCHHHHHHHHHTTCCEEEESSSCTTCBCEEEEEGGGCCHHHHHHHHHTBCSCCEEEEEHHHHHHTTCCBSCC------
T ss_pred chhhHHHHHHHHHCCCeEEEEeCCCCCCCEEEEEEhhhCCHHHHHHHHHhCCCcEEEEcCHHHHhhCCCchhccc--cCC
Confidence 378999999999999999999999999999999999999999999999999999999999999999999999987 888
Q ss_pred cccCceEEEeeccCCCCCCCChhhhHHHHHHHhcCCCCCCCccCCCCcCccccccCCccccCChhHHHHHHHHHcCCCcc
Q 017544 187 KLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPV 266 (369)
Q Consensus 187 ~~~taftVsVDa~~g~~TGISa~DRA~TIr~LAdp~s~p~Df~rPGHvfPL~a~~gGvl~R~GhtEAAVdLarLAGL~Pa 266 (369)
+++|+||||||+++|++|||||.||+.||++|++|+++|.||++|||||||++++|||++|+|||||||||||||||.|+
T Consensus 82 ~~~taFtVsVda~~g~tTGISA~DRa~Ti~~l~~~~~~p~df~rPGHvfPL~A~~gGvl~R~GHTEAavdLarLAGl~Pa 161 (204)
T 1tks_A 82 RHGTAYTITCDFAEGTTTGISAHDRALTTRSLANPNSKPQDFIKPGHILPLRAVPGLLKKRRGHTEAAVQLSTLAGLQPA 161 (204)
T ss_dssp --CCCBBCCEEESTTCSSSCSHHHHHHHHHHHHCTTCCGGGEEEEEEEEEEEECTTGGGTCCCHHHHHHHHHHHTTSCSB
T ss_pred CCCCCeEEEEeccCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCCcceeeecCCCCccCCCcHHHHHHHHHHcCCCce
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEe-CCCCCcCChhHHHHHHHhCCCeEEeHHHHHHHHH
Q 017544 267 AVLCEIV-DDDGSMARLPKLRQFAQTENLKIISIADLIRYRR 307 (369)
Q Consensus 267 aVi~el~-~~dG~ma~~~~l~~fA~~~~L~ivsi~DLi~yr~ 307 (369)
+|||||+ ++||+|+|++++.+||++|+||+|+|+||++||+
T Consensus 162 ~vicEi~~~~dG~mar~~~l~~fA~~h~l~iiti~dLi~yr~ 203 (204)
T 1tks_A 162 GVICELVRDEDGLMMRLDDCIQFGKKHGIKIININQLVEYIS 203 (204)
T ss_dssp EEEEEBBCTTTCCBCBHHHHHHHHHHHTCCEEEHHHHHHHHC
T ss_pred EEEEEEeECCCCCcCCHHHHHHHHHHcCCcEEEHHHHHHHHh
Confidence 9999999 8899999999999999999999999999999985
No 4
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A
Probab=100.00 E-value=5.4e-73 Score=529.19 Aligned_cols=198 Identities=31% Similarity=0.587 Sum_probs=189.3
Q ss_pred cccHHHHHHHHHCCcEEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhCCCcEEEecCHHHHHhcCCCcccccCCCcc-
Q 017544 108 FASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEE- 186 (369)
Q Consensus 108 ~~~VerAi~aLr~G~pVvV~Dde~re~EgdLV~AAe~aT~e~vafm~~~~~Glvcvalt~~ra~~LgL~~m~~~~~n~~- 186 (369)
|++|++||++||+|+||||+||++||||||||+|||.+||+.||||++|++|+||++|++++|++|+||+|+.. |++
T Consensus 1 ~~~ie~Ai~alr~G~~Viv~DdedREnEgDli~aAe~~Tpe~i~fm~~~~~GliC~~l~~e~~~~L~Lp~Mv~~--n~~~ 78 (227)
T 1snn_A 1 MNNVEKAIEALKKGEIILVYDSDEREGETDMVVASQFITPEHIRIMRKDAGGLICTALHPDICNKLGIPFMVDI--LEFA 78 (227)
T ss_dssp -CHHHHHHHHHHTTCCEEEECCTTTTCCEEEEEEGGGCCHHHHHHHHHHTEEEEEEEECHHHHHHHTCCCHHHH--HHHH
T ss_pred CchHHHHHHHHHCCCeEEEEeCCCCCCceeEEEEhhhCCHHHHHHHHHcCCCcEEEEcCHHHHhhCCChhhhhh--hccc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999976 432
Q ss_pred ---------------c--ccCceEEEeeccCCCCCCCChhhhHHHHHHHhc------CCCCCCCccCCCCcCccccccCC
Q 017544 187 ---------------K--LCTAFTVSVDAKYGTTTGVSANDRAKTVLALAC------RDSKPEDFNRPGHIFPLKYREGG 243 (369)
Q Consensus 187 ---------------~--~~taftVsVDa~~g~~TGISa~DRA~TIr~LAd------p~s~p~Df~rPGHvfPL~a~~gG 243 (369)
+ ++|+|||||||+. ++|||||.|||.||++|++ |++.|.||++|||||||++++||
T Consensus 79 ~~~~~~~~~l~~~~~~Y~~~TaFtvsVd~~~-~tTGISA~DRa~Tir~la~~~~~~~~~~~~~df~rPGHVfPL~A~~gG 157 (227)
T 1snn_A 79 SQKFKVLRELYPNDIPYDEKSSFSITINHRK-TFTGITDNDRAFTIKKLAELVKEGRFNDFGKEFRSPGSVTLLRAAEGL 157 (227)
T ss_dssp TTTCHHHHHTCCTTCTTSSSCCEEEEEEETT-CSSSCSHHHHHHHHHHHHHHHHTTCGGGHHHHEEEEEEEEEEECCTTG
T ss_pred cccccccccccccccccCCCCCcEEEEEcCC-CCCCCCHHHHHHHHHHHHhhhcccCCCCCHHHcCCCCCceeEEeCCCC
Confidence 2 7899999999985 9999999999999999999 99999999999999999999999
Q ss_pred ccccCChhHHHHHHHHHcCCCccEEEEEEeCCCCCcCChhHHHHHHHhCCCeEEeHHHHHHHHHh
Q 017544 244 VLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRK 308 (369)
Q Consensus 244 vl~R~GhtEAAVdLarLAGL~PaaVi~el~~~dG~ma~~~~l~~fA~~~~L~ivsi~DLi~yr~~ 308 (369)
|++|+|||||||||||||||.|++|||||+++||+|+|++++.+||++||||+|+|+||++||++
T Consensus 158 Vl~R~GHTEaaVdLarlAGl~Pa~VicEi~~ddG~mar~~~l~~fA~~h~l~~iti~dLi~yr~~ 222 (227)
T 1snn_A 158 VKNRQGHTEMTVALAELANLVPITTICEMMGDDGNAMSKNETKRYAEKHNLIYLSGEEIINYYLD 222 (227)
T ss_dssp GGTCCSHHHHHHHHHHHTTSCSEEEEEEEBCTTSSBCCHHHHHHHHHHHTCCEEEHHHHHHHC--
T ss_pred EeeCCCchHHHHHHHHHcCCCceEEEEEEeCCCCCcCCHHHHHHHHHHcCCcEEEHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999875
No 5
>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} SCOP: d.115.1.2 PDB: 1g58_A 1iez_A 3ls6_A 3lrj_A 3lqu_A 3h07_A
Probab=100.00 E-value=1.4e-71 Score=517.62 Aligned_cols=204 Identities=49% Similarity=0.869 Sum_probs=194.3
Q ss_pred CcccHHHHHHHHHCCcEEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhCCCcEEEecCHHHHHhcCCCcccccCCCcc
Q 017544 107 GFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEE 186 (369)
Q Consensus 107 ~~~~VerAi~aLr~G~pVvV~Dde~re~EgdLV~AAe~aT~e~vafm~~~~~Glvcvalt~~ra~~LgL~~m~~~~~n~~ 186 (369)
.|++|++||++||+|+||||+||++||||||||+|||.+|++.||||++|++|++|++|+++||++|+||+|+.. |++
T Consensus 12 ~~~~ie~Ai~~lr~G~~Viv~DdedREnEgdli~aAe~~T~e~i~fm~~~~~GliCl~lt~~ra~~L~Lp~mv~~--n~~ 89 (217)
T 1g57_A 12 PFERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMVEN--NTS 89 (217)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEC----CCCEEEEEETTTCCHHHHHHHHHHBCSCCEEEECHHHHHHTTCCBSCSS--CCC
T ss_pred cHHHHHHHHHHHHCCCeEEEEeCCCCCcCEEEEEEhhhCCHHHHHHHHHhCCCceEEECCHHHHhhCCCcccccc--CCC
Confidence 368999999999999999999999999999999999999999999999999999999999999999999999987 888
Q ss_pred cccCceEEEeeccCCCCCCCChhhhHHHHHHHhcCCCCCCCccCCCCcCccccccCCccccCChhHHHHHHHHHcCCCcc
Q 017544 187 KLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPV 266 (369)
Q Consensus 187 ~~~taftVsVDa~~g~~TGISa~DRA~TIr~LAdp~s~p~Df~rPGHvfPL~a~~gGvl~R~GhtEAAVdLarLAGL~Pa 266 (369)
+++++||||||+++|++||||+.||+.||++|++|+++|.||++|||||||++++|||++|+|||||||||||||||.||
T Consensus 90 ~~~taftVsvda~~g~tTGISa~DRa~Ti~~lad~~~~~~Df~~PGHvfPL~A~~gGvl~R~GhTEAavdLarLAGl~Pa 169 (217)
T 1g57_A 90 AYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPA 169 (217)
T ss_dssp TTCCCBBSCEEESSSCSSSCSHHHHHHHHHHHHSTTCCGGGEEEEEEEEEEECCTTGGGTCCSHHHHHHHHHHHTTSCSC
T ss_pred cCCCceEEeeccccCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCCccceeecCCCcccCCCcHHHHHHHHHHcCCCce
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCcCChhHHHHHHHhCCCeEEeHHHHHHHHHhcccc
Q 017544 267 AVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRL 312 (369)
Q Consensus 267 aVi~el~~~dG~ma~~~~l~~fA~~~~L~ivsi~DLi~yr~~~e~l 312 (369)
+|||||+++||+|++.+++.+||++|+|++|+|+||++||+++|+.
T Consensus 170 ~vicEi~~~dG~mar~~~l~~fA~~h~l~~iti~dLi~yr~~~e~~ 215 (217)
T 1g57_A 170 GVLCELTNDDGTMARAPECIEFANKHNMALVTIEDLVAYRQAHERK 215 (217)
T ss_dssp EEEEEBBCTTSSBCCHHHHHHHHHHTTCEEEEHHHHHHHHHHHC--
T ss_pred EEEEEEeCCCCCccCHHHHHHHHHHcCCCEEEHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999999988754
No 6
>1y0n_A Hypothetical UPF0270 protein PA3463; MCSG, midwest center for structural genomics, protein struct initiative, PSI, structural genomics; 2.00A {Pseudomonas aeruginosa} SCOP: d.291.1.1
Probab=51.97 E-value=18 Score=28.27 Aligned_cols=33 Identities=27% Similarity=0.378 Sum_probs=25.2
Q ss_pred ccHHHHHHHHHCCcEEEEEeCCCCCCceeEEEEcCC
Q 017544 109 ASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASL 144 (369)
Q Consensus 109 ~~VerAi~aLr~G~pVvV~Dde~re~EgdLV~AAe~ 144 (369)
.+|++...+|++|+.||++|... |..=+++.+.
T Consensus 38 ~kv~qv~~qL~~GeavIvfse~~---Esv~I~~k~~ 70 (78)
T 1y0n_A 38 VRVERARHALRRGEAVILFDPES---QQCQLMLRSE 70 (78)
T ss_dssp HHHHHHHHHHHTTSEEEEECTTT---CCEEEEEGGG
T ss_pred HHHHHHHHHHHcCCEEEEECCCC---CeEeeeEHHH
Confidence 47999999999999999997543 4544555544
No 7
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=39.92 E-value=20 Score=28.44 Aligned_cols=21 Identities=19% Similarity=0.243 Sum_probs=19.1
Q ss_pred CcccHHHHHHHHHCCcEEEEE
Q 017544 107 GFASISEAIEDIRQGKLVIVV 127 (369)
Q Consensus 107 ~~~~VerAi~aLr~G~pVvV~ 127 (369)
.|+..+++.+.||+|++|||-
T Consensus 14 sy~Da~~I~d~Lr~~~~VvvN 34 (87)
T 3p04_A 14 SFEDAQVIGGAFRDGDAVVFD 34 (87)
T ss_dssp SGGGHHHHHHHHHTTCCEEEE
T ss_pred cHHHHHHHHHHHHCCCEEEEE
Confidence 578899999999999999984
No 8
>3n2l_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine ribonucleotide biosynthesis, infectious diseases; 2.10A {Vibrio cholerae}
Probab=32.46 E-value=93 Score=28.66 Aligned_cols=67 Identities=19% Similarity=0.303 Sum_probs=46.0
Q ss_pred ccccCChhHHHHHHHHHcCCCccEEEEEEeCCCCCcCChhHHHHHHHhCCCeEE---eHHHHHHHHHhcc
Q 017544 244 VLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKII---SIADLIRYRRKRD 310 (369)
Q Consensus 244 vl~R~GhtEAAVdLarLAGL~PaaVi~el~~~dG~ma~~~~l~~fA~~~~L~iv---si~DLi~yr~~~e 310 (369)
|+.--+-..+++++.+-+|...++++|-+--.+|--.....++++-+++|+|+. +++||+.|.....
T Consensus 151 vitTG~T~~~a~~~l~~~Ga~vv~v~vlvdr~egG~~~l~a~~~~~~~~Gv~v~SL~~~~~l~~~~~~~~ 220 (238)
T 3n2l_A 151 VITAGTAIRESMELIQANKADLAGVLVAIDRQEKGKGELSAIQEVERDFGCAVISIVSLTDLITYLEQQG 220 (238)
T ss_dssp CCSSSHHHHHHHHHHHHTTCEEEEEEEEEECCCBCSSSSBHHHHHHHHHCCEEEEEEEHHHHHHHHHSSC
T ss_pred eecccHHHHHHHHHHHHcCCEEEEEEEEEEcccCccchhhHHHHHHHHcCCCEEEEEEHHHHHHHHHHcC
Confidence 343333456899999999998888887664444322234556777677899865 6889999876544
No 9
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=32.10 E-value=62 Score=31.43 Aligned_cols=47 Identities=17% Similarity=0.231 Sum_probs=37.2
Q ss_pred hHHHHHHHHHcCCCccEEEEEEe-CCCCCcCChhHHHHHHHhCCCeEE
Q 017544 251 TEASVDLAVLAGLEPVAVLCEIV-DDDGSMARLPKLRQFAQTENLKII 297 (369)
Q Consensus 251 tEAAVdLarLAGL~PaaVi~el~-~~dG~ma~~~~l~~fA~~~~L~iv 297 (369)
-|.+++=..-+|+.|.+|++... +..|...+.+++.++|++||+.++
T Consensus 222 L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~~~~~lh 269 (486)
T 1js3_A 222 LQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLH 269 (486)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHcCCEEE
Confidence 35566555567888977777665 467999999999999999999875
No 10
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=27.00 E-value=69 Score=31.57 Aligned_cols=46 Identities=20% Similarity=0.201 Sum_probs=36.3
Q ss_pred HHHHHHHHHcCCCccEEEEEEe-CCCCCcCChhHHHHHHHhCCCeEE
Q 017544 252 EASVDLAVLAGLEPVAVLCEIV-DDDGSMARLPKLRQFAQTENLKII 297 (369)
Q Consensus 252 EAAVdLarLAGL~PaaVi~el~-~~dG~ma~~~~l~~fA~~~~L~iv 297 (369)
|.+++-.+-.|..|.+|++... +..|...+.+++.++|++||+.++
T Consensus 247 ~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~~l~ 293 (515)
T 2jis_A 247 ERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLH 293 (515)
T ss_dssp HHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEE
Confidence 4455544556878998888776 457999999999999999998876
No 11
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=24.63 E-value=82 Score=30.83 Aligned_cols=48 Identities=19% Similarity=0.198 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHcCCCccEEEEEEeC-CCCCcCChhHHHHHHHhCCCeEE
Q 017544 250 HTEASVDLAVLAGLEPVAVLCEIVD-DDGSMARLPKLRQFAQTENLKII 297 (369)
Q Consensus 250 htEAAVdLarLAGL~PaaVi~el~~-~dG~ma~~~~l~~fA~~~~L~iv 297 (369)
+-|.+++=.+-.|+.|..|++.... ..|...+.+++.++|++||+.++
T Consensus 227 ~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l~~I~~la~~~~~~lh 275 (481)
T 4e1o_A 227 ALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPICAREGLWLH 275 (481)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCCHHHHHHHHHHcCCeEE
Confidence 4456776667788889888877654 46999999999999999998763
No 12
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=24.28 E-value=1e+02 Score=30.22 Aligned_cols=50 Identities=18% Similarity=0.235 Sum_probs=38.9
Q ss_pred CChhHHHHHHHHHcCCCccEEEEEEeC-CCCCcCChhHHHHHHHhCCCeEE
Q 017544 248 AGHTEASVDLAVLAGLEPVAVLCEIVD-DDGSMARLPKLRQFAQTENLKII 297 (369)
Q Consensus 248 ~GhtEAAVdLarLAGL~PaaVi~el~~-~dG~ma~~~~l~~fA~~~~L~iv 297 (369)
..+-|.+++-.+-.|+.|..|++.... ..|...+.+++.++|++||+.++
T Consensus 218 ~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~~la~~~~~~lh 268 (475)
T 3k40_A 218 GAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIH 268 (475)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCHHHHHHHHHHhCCeEE
Confidence 344566776667778888877776644 46999999999999999999874
No 13
>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1
Probab=21.75 E-value=67 Score=24.96 Aligned_cols=31 Identities=19% Similarity=0.445 Sum_probs=22.1
Q ss_pred EEEeCCCCC---cCChhHHHHHHHhCCCeEEeHH
Q 017544 270 CEIVDDDGS---MARLPKLRQFAQTENLKIISIA 300 (369)
Q Consensus 270 ~el~~~dG~---ma~~~~l~~fA~~~~L~ivsi~ 300 (369)
+.+++++|+ .....++.+.|++.+|.+|-++
T Consensus 16 Vrli~~~Ge~lGv~~~~eAl~~A~e~~LDLVevs 49 (78)
T 1tif_A 16 VRLIDQNGDQLGIKSKQEALEIAARRNLDLVLVA 49 (78)
T ss_dssp EEEECTTSCEEEEEEHHHHHHHHHHTTCEEEEEE
T ss_pred EEEECCCCcCCCcccHHHHHHHHHHcCCCEEEEC
Confidence 567888886 3667777777887777766553
No 14
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=21.74 E-value=98 Score=30.70 Aligned_cols=48 Identities=19% Similarity=0.148 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHcCCCccEEEEEEeC-CCCCcCChhHHHHHHHhCCCeEE
Q 017544 250 HTEASVDLAVLAGLEPVAVLCEIVD-DDGSMARLPKLRQFAQTENLKII 297 (369)
Q Consensus 250 htEAAVdLarLAGL~PaaVi~el~~-~dG~ma~~~~l~~fA~~~~L~iv 297 (369)
.-|.+++=.+-.|..|.+|++.... ..|.+.+.+++.++|++||+.++
T Consensus 234 ~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~~~lh 282 (511)
T 3vp6_A 234 DFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLH 282 (511)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHHHcCCEEE
Confidence 3456666666778889888887655 57999999999999999999875
No 15
>3mjd_A Orotate phosphoribosyltransferase; IDP02311, csgid, structural genomics, center for structural genomics of infectious diseases; 1.90A {Francisella tularensis}
Probab=21.49 E-value=1.6e+02 Score=26.75 Aligned_cols=60 Identities=10% Similarity=0.201 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHcCCCccEEEEEEeCCCCCc-CChhHHHHHHHhCCCeEE---eHHHHHHHHHhc
Q 017544 250 HTEASVDLAVLAGLEPVAVLCEIVDDDGSM-ARLPKLRQFAQTENLKII---SIADLIRYRRKR 309 (369)
Q Consensus 250 htEAAVdLarLAGL~PaaVi~el~~~dG~m-a~~~~l~~fA~~~~L~iv---si~DLi~yr~~~ 309 (369)
-..+++++.+-+|...+++++-+--..|-- -..+.++++-+++|+|+. +++||+.|....
T Consensus 151 Tl~~a~~~L~~~Ga~vv~v~vlvdr~e~g~~~~~~a~~~~~~~~gv~v~sL~~~~~l~~~~~~~ 214 (232)
T 3mjd_A 151 AFYESYNKLKIINAKIAGVVLSIDRQEKAKDSDISATKKISQDFNIPVLAVTNFESIFEYVKEN 214 (232)
T ss_dssp HHHHHHHHHHTTTCEEEEEEEEEECCBCCTTSSSCHHHHHHHHHCCCEEEEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEEEEEECCcCCccccchhHHHHHHHcCCcEEEEEeHHHHHHHHHhh
Confidence 345899999999998888877664332210 123455666677899865 688999986553
No 16
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=21.18 E-value=87 Score=30.61 Aligned_cols=46 Identities=20% Similarity=0.167 Sum_probs=35.6
Q ss_pred HHHHHHHHHcCCCccEEEEEEe-CCCCCcCChhHHHHHHHhCCCeEE
Q 017544 252 EASVDLAVLAGLEPVAVLCEIV-DDDGSMARLPKLRQFAQTENLKII 297 (369)
Q Consensus 252 EAAVdLarLAGL~PaaVi~el~-~~dG~ma~~~~l~~fA~~~~L~iv 297 (369)
|.+++=.+-.|..|.+|++... +..|.....+++.++|++||+.++
T Consensus 233 ~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~~lh 279 (504)
T 2okj_A 233 EAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLH 279 (504)
T ss_dssp HHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEE
Confidence 4555545556888888887665 456889999999999999998764
No 17
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=20.43 E-value=69 Score=29.08 Aligned_cols=34 Identities=15% Similarity=0.215 Sum_probs=26.6
Q ss_pred CccEE-EEEEeCCCCCcCChhHHHHHHHhCCCeEE
Q 017544 264 EPVAV-LCEIVDDDGSMARLPKLRQFAQTENLKII 297 (369)
Q Consensus 264 ~PaaV-i~el~~~dG~ma~~~~l~~fA~~~~L~iv 297 (369)
.+.+| ++...++.|.....+++.++|++||+.+|
T Consensus 171 ~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li 205 (397)
T 3f9t_A 171 DVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIH 205 (397)
T ss_dssp CCCEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEE
T ss_pred CCeEEEEECCCCCCCCCCCHHHHHHHHHHhCCeEE
Confidence 34444 45555678999999999999999998776
No 18
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=20.05 E-value=1.1e+02 Score=29.71 Aligned_cols=34 Identities=12% Similarity=0.231 Sum_probs=27.8
Q ss_pred CccEEEEEE-eCCCCCcCChhHHHHHHHhCCCeEE
Q 017544 264 EPVAVLCEI-VDDDGSMARLPKLRQFAQTENLKII 297 (369)
Q Consensus 264 ~PaaVi~el-~~~dG~ma~~~~l~~fA~~~~L~iv 297 (369)
.+.+|++|- -|+.|.+.+.+++.++|++||+++|
T Consensus 167 ~t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~li 201 (430)
T 3ri6_A 167 TTKLLFLETISNPQLQVADLEALSKVVHAKGIPLV 201 (430)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEE
T ss_pred CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEE
Confidence 456777664 4568999999999999999998876
Done!