RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 017544
(369 letters)
>d1snna_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate
synthase, DHBP synthase, RibB {Archaeon
Methanocaldococcus jannaschii [TaxId: 2190]}
Length = 219
Score = 241 bits (615), Expect = 2e-79
Identities = 62/218 (28%), Positives = 120/218 (55%), Gaps = 23/218 (10%)
Query: 110 SISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGED 169
++ +AIE +++G++++V D ++RE E D+++A+ +TPE + + + G++C ++ +
Sbjct: 2 NVEKAIEALKKGEIILVYDSDEREGETDMVVASQFITPEHIRIMRKDAGGLICTALHPDI 61
Query: 170 LERLELPLMVNH----------------KDNEEKLCTAFTVSVDAKYGTTTGVSANDRAK 213
+L +P MV+ D ++F+++++ + T TG++ NDRA
Sbjct: 62 CNKLGIPFMVDILEFASQKFKVLRELYPNDIPYDEKSSFSITINHR-KTFTGITDNDRAF 120
Query: 214 TVLALA------CRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVA 267
T+ LA + ++F PG + L+ EG V R GHTE +V LA LA L P+
Sbjct: 121 TIKKLAELVKEGRFNDFGKEFRSPGSVTLLRAAEGLVKNRQGHTEMTVALAELANLVPIT 180
Query: 268 VLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRY 305
+CE++ DDG+ + +++A+ NL +S ++I Y
Sbjct: 181 TICEMMGDDGNAMSKNETKRYAEKHNLIYLSGEEIINY 218
>d1g57a_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate
synthase, DHBP synthase, RibB {Escherichia coli [TaxId:
562]}
Length = 209
Score = 240 bits (613), Expect = 2e-79
Identities = 97/203 (47%), Positives = 139/203 (68%), Gaps = 2/203 (0%)
Query: 108 FASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKG 167
F + A+ +R+G+ V+V+DDEDRENEGD+I A +T E MA +RHG+GIVC+ +
Sbjct: 9 FERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITE 68
Query: 168 EDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPED 227
+ ++L+LP+MV + + T FTV+++A G TTGVSA DR TV A +KP D
Sbjct: 69 DRRKQLDLPMMVENNTS--AYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSD 126
Query: 228 FNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQ 287
NRPGH+FPL+ + GGVL R GHTEA++DL LAG +P VLCE+ +DDG+MAR P+ +
Sbjct: 127 LNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPECIE 186
Query: 288 FAQTENLKIISIADLIRYRRKRD 310
FA N+ +++I DL+ YR+ +
Sbjct: 187 FANKHNMALVTIEDLVAYRQAHE 209
>d1k4ia_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate
synthase, DHBP synthase, RibB {Magnaporthe grisea
[TaxId: 148305]}
Length = 216
Score = 231 bits (590), Expect = 7e-76
Identities = 90/217 (41%), Positives = 123/217 (56%), Gaps = 12/217 (5%)
Query: 108 FASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKG 167
F +I + I+ + G+ V+V+DD RENE DLI+AA VT E MAF+VRH +G++C +
Sbjct: 1 FDAIPDVIQAFKNGEFVVVLDDPSRENEADLIIAAESVTTEQMAFMVRHSSGLICAPLTP 60
Query: 168 EDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPED 227
E L+LP MV H + +V + TTTG+SA+DRA LA D++P
Sbjct: 61 ERTTALDLPQMVTHNADPRGTAYTVSVDAEHP-STTTGISAHDRALACRMLAAPDAQPSH 119
Query: 228 FNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDG---------- 277
F RPGH+FPL+ GGV R GHTEA V+L LAG PVAV+ EIVDD
Sbjct: 120 FRRPGHVFPLRAVAGGVRARRGHTEAGVELCRLAGKRPVAVISEIVDDGQEVEGRAVRAA 179
Query: 278 -SMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLV 313
M R + FA+ LK+ +I D+I + K + +
Sbjct: 180 PGMLRGDECVAFARRWGLKVCTIEDMIAHVEKTEGKL 216
>d1tksa_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate
synthase, DHBP synthase, RibB {Candida albicans [TaxId:
5476]}
Length = 202
Score = 229 bits (585), Expect = 3e-75
Identities = 103/202 (50%), Positives = 139/202 (68%), Gaps = 3/202 (1%)
Query: 108 FASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKG 167
F I EA+E + G+ +IV+DDEDRENEGDLIMAA L+T E MAF+VR+ +G VCV +
Sbjct: 3 FTPIEEALEAYKNGEFLIVMDDEDRENEGDLIMAAELITQEKMAFLVRYSSGYVCVPLSE 62
Query: 168 EDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPED 227
E +LELP M+ ++ + TA+T++ D GTTTG+SA+DRA T +LA +SKP+D
Sbjct: 63 ERANQLELPPMLANRSDRH--GTAYTITCDFAEGTTTGISAHDRALTTRSLANPNSKPQD 120
Query: 228 FNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIV-DDDGSMARLPKLR 286
F +PGHI PL+ G + KR GHTEA+V L+ LAGL+P V+CE+V D+DG M RL
Sbjct: 121 FIKPGHILPLRAVPGLLKKRRGHTEAAVQLSTLAGLQPAGVICELVRDEDGLMMRLDDCI 180
Query: 287 QFAQTENLKIISIADLIRYRRK 308
QF + +KII+I L+ Y K
Sbjct: 181 QFGKKHGIKIININQLVEYISK 202
>d2bz1a1 c.144.1.1 (A:1-174) GTP cyclohydrolase II, RibA
{Escherichia coli [TaxId: 562]}
Length = 174
Score = 49.4 bits (117), Expect = 9e-08
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 313 VELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKVCIHLNYQALLVKFSYFCI 366
++ A A +PT WG F + L G +H+A+V I + +L + C+
Sbjct: 3 LKRVAEAKLPTPWGDFLMVGFEELATGHDHVALVYGDIS-GHTPVLARVHSECL 55
>d1kuta_ d.143.1.1 (A:) SAICAR synthase {Thermotoga maritima [TaxId:
2336]}
Length = 224
Score = 30.8 bits (69), Expect = 0.16
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 81 LGAEITPKTSDFFPNDDEFDLDRPTKGFASISEAIEDI 118
LG EI+P T + FD D + + ++
Sbjct: 177 LGDEISPDTFRLRKKGEIFDKDVYRRDLGDPLKKYREV 214
>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS)
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 364
Score = 30.9 bits (68), Expect = 0.20
Identities = 17/109 (15%), Positives = 30/109 (27%), Gaps = 5/109 (4%)
Query: 137 DLIMAASLVTPEAMAFIVRHGTGI-VCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVS 195
D + +T EA ++ G G VC L+ ++ P + H +L
Sbjct: 6 DPLQTGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPI--HDFIHNQLPKFL--G 61
Query: 196 VDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGV 244
D T A LA ++ + +
Sbjct: 62 CDVARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAERAGLNI 110
>d2hzaa1 a.43.1.3 (A:1-48) Nickel responsive regulator NikR,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 48
Score = 27.0 bits (60), Expect = 0.45
Identities = 8/39 (20%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Query: 97 DEFDLDRPTKGFASISEAIED-IRQGKLVIVVDDEDREN 134
+ D +G+ + SEAI D +R + + +++
Sbjct: 14 ETLDSLSQRRGYNNRSEAIRDILRSA----LAQEATQQH 48
>d1p99a_ c.94.1.1 (A:) Putative lipoprotein (NlpA family)
{Staphylococcus aureus [TaxId: 1280]}
Length = 255
Score = 29.3 bits (65), Expect = 0.71
Identities = 16/143 (11%), Positives = 43/143 (30%), Gaps = 8/143 (5%)
Query: 40 NVGRIKTAALVSGEGDVISYPNNNKKYTAIETQSDTIGFGTLGAEITPKTSD-------F 92
N R +G + I + + + A+ T +
Sbjct: 109 NQARALKLLEAAGLIKLKKDFGLAGTVKDITSNPKHLKITAVDAQQTARALSDVDIAVIN 168
Query: 93 FPNDDEFDLDRPTKGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAF 152
+ D + ++ ++ V+D+D +N+ + + EA
Sbjct: 169 NGVATKAGKDPKNDPIFLEKSNSDAVKPYINIVAVNDKDLDNKTYAKIVELYHSKEAQKA 228
Query: 153 IVRH-GTGIVCVSMKGEDLERLE 174
+ G V++ ++++ +E
Sbjct: 229 LQEDVKDGEKPVNLSKDEIKAIE 251
>d2ns1b1 d.58.5.1 (B:1-112) PII-homolog GlnK {Shigella flexneri
[TaxId: 623]}
Length = 112
Score = 26.7 bits (59), Expect = 2.2
Identities = 8/50 (16%), Positives = 22/50 (44%), Gaps = 8/50 (16%)
Query: 115 IEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVS 164
+ + + K+ + + D+ + D++ A A+ + G G + V+
Sbjct: 53 VNFLPKVKIDVAIADDQLDEVIDIVSKA--------AYTGKIGDGKIFVA 94
>d1jx4a2 e.8.1.7 (A:1-240) DinB homolog (DBH) {Archaeon Sulfolobus
solfataricus, DNA polymerase IV [TaxId: 2287]}
Length = 240
Score = 27.6 bits (60), Expect = 2.2
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 108 FASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIV 154
+A + E + +GK V+V R + + A+ EA F V
Sbjct: 12 YAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATAN---YEARKFGV 55
>d1r8ia_ a.8.7.1 (A:) Typo IV secretion system protein TraC
{Escherichia coli [TaxId: 562]}
Length = 187
Score = 27.2 bits (60), Expect = 2.6
Identities = 9/71 (12%), Positives = 22/71 (30%), Gaps = 1/71 (1%)
Query: 77 GFGTLGAEITPKTSDFFPNDDEFDLDRPTKGFASISEAIEDIRQGKLVIVVDDEDRENEG 136
G L T ++ P++ + +S++ ++ + G+ VDD
Sbjct: 39 NLGDLLGTSTNTLANNLPDNWKEVYSDAMNSSSSVTPSVNSMM-GQFNAEVDDMTPSEAI 97
Query: 137 DLIMAASLVTP 147
+
Sbjct: 98 AYMNKKLAEKG 108
>d2bj7a1 a.43.1.3 (A:1-50) Nickel responsive regulator NikR,
N-terminal domain {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 50
Score = 25.0 bits (55), Expect = 2.7
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Query: 97 DEFDLDRPTKGFASISEAIEDIRQGKLVIVVDDEDRENEG 136
++FD G+ + SEAI D+ + ++ G
Sbjct: 16 EKFDQIIEEIGYENRSEAIRDLIRDFII-----RHEWEVG 50
>d1vfja_ d.58.5.1 (A:) PII (product of glnB) {Thermus thermophilus
[TaxId: 274]}
Length = 116
Score = 25.2 bits (55), Expect = 7.2
Identities = 10/60 (16%), Positives = 21/60 (35%), Gaps = 8/60 (13%)
Query: 105 TKGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVS 164
+ + + +E + +L I V + + + I+ A A G G + V
Sbjct: 43 VETYRGTTVKMELHEKVRLEIGVSEPFVKPTVEAILKA--------ARTGEVGDGKIFVL 94
>d1z8oa1 a.104.1.1 (A:3-404) Cytochrome P450-ERYF {Saccharopolyspora
erythraea [TaxId: 1836]}
Length = 402
Score = 26.3 bits (56), Expect = 7.3
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 91 DFFPNDDEFDLDRPTKGF 108
FP+ FD+ R T+G
Sbjct: 322 KQFPDPHRFDVTRDTRGH 339
>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus
lactis, isozyme B [TaxId: 1358]}
Length = 311
Score = 25.7 bits (55), Expect = 8.8
Identities = 4/17 (23%), Positives = 10/17 (58%)
Query: 106 KGFASISEAIEDIRQGK 122
S+ I+++++GK
Sbjct: 294 YRIESLESLIQEVKEGK 310
>d1xeba_ d.108.1.1 (A:) Hypothetical protein PA0115 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 149
Score = 25.1 bits (54), Expect = 9.9
Identities = 8/20 (40%), Positives = 9/20 (45%)
Query: 328 FKAHCYRSLLDGIEHIAMVK 347
F A L D I HI M +
Sbjct: 129 FVAVTEVYLEDDIPHIGMRR 148
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.399
Gapped
Lambda K H
0.267 0.0633 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,365,948
Number of extensions: 64818
Number of successful extensions: 209
Number of sequences better than 10.0: 1
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 20
Length of query: 369
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 282
Effective length of database: 1,213,086
Effective search space: 342090252
Effective search space used: 342090252
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.8 bits)