Query 017546
Match_columns 369
No_of_seqs 256 out of 641
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 16:10:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017546.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017546hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qkd_A Zinc finger protein ZPR 100.0 4E-107 1E-111 815.1 30.2 295 29-369 10-304 (404)
2 2qkd_A Zinc finger protein ZPR 100.0 2.4E-67 8.3E-72 527.2 20.2 193 22-216 211-404 (404)
3 1qyp_A RNA polymerase II; tran 91.7 0.28 9.5E-06 35.7 5.0 42 30-72 14-55 (57)
4 1qyp_A RNA polymerase II; tran 91.0 0.14 4.7E-06 37.3 2.8 41 285-326 15-55 (57)
5 3ga8_A HTH-type transcriptiona 88.1 0.37 1.3E-05 37.1 3.4 41 285-326 2-48 (78)
6 1k81_A EIF-2-beta, probable tr 85.3 0.29 9.9E-06 32.9 1.2 31 287-325 2-32 (36)
7 3v2d_5 50S ribosomal protein L 84.6 0.33 1.1E-05 36.3 1.4 22 32-69 31-52 (60)
8 3o9x_A Uncharacterized HTH-typ 84.3 0.65 2.2E-05 38.2 3.3 42 285-326 2-48 (133)
9 2k4x_A 30S ribosomal protein S 83.8 0.62 2.1E-05 34.1 2.5 34 280-324 13-46 (55)
10 4ayb_P DNA-directed RNA polyme 83.7 0.25 8.5E-06 35.4 0.3 29 33-70 5-33 (48)
11 1tfi_A Transcriptional elongat 81.2 1.6 5.4E-05 31.3 3.8 41 283-324 7-47 (50)
12 3j20_Y 30S ribosomal protein S 81.1 0.86 3E-05 32.7 2.4 34 280-324 14-47 (50)
13 2zjr_Z 50S ribosomal protein L 80.8 0.57 1.9E-05 35.0 1.4 22 32-69 31-52 (60)
14 3j21_g 50S ribosomal protein L 80.6 0.32 1.1E-05 35.3 -0.1 31 280-325 9-39 (51)
15 2k5c_A Uncharacterized protein 80.3 0.069 2.4E-06 42.6 -4.0 40 284-323 7-60 (95)
16 3h0g_I DNA-directed RNA polyme 79.8 1.5 5.2E-05 36.2 3.8 42 29-72 70-112 (113)
17 3a43_A HYPD, hydrogenase nicke 79.5 0.088 3E-06 45.3 -4.0 49 31-79 70-126 (139)
18 1vq8_Z 50S ribosomal protein L 79.0 0.85 2.9E-05 36.1 1.9 36 31-81 27-62 (83)
19 3j20_Y 30S ribosomal protein S 77.2 1.7 5.9E-05 31.1 3.0 33 26-69 14-46 (50)
20 3ga8_A HTH-type transcriptiona 75.9 2.7 9.3E-05 32.1 4.0 38 32-71 3-47 (78)
21 3h0g_I DNA-directed RNA polyme 74.6 1.2 4.2E-05 36.8 1.8 42 285-327 72-113 (113)
22 1vq8_Z 50S ribosomal protein L 73.2 0.73 2.5E-05 36.5 0.1 39 282-335 24-62 (83)
23 3a43_A HYPD, hydrogenase nicke 73.1 0.37 1.3E-05 41.3 -1.8 53 283-335 68-128 (139)
24 2k4x_A 30S ribosomal protein S 70.2 2.5 8.4E-05 30.9 2.3 33 26-69 13-45 (55)
25 1twf_L ABC10-alpha, DNA-direct 67.8 0.84 2.9E-05 35.1 -0.6 29 284-324 27-55 (70)
26 3o9x_A Uncharacterized HTH-typ 67.5 4.7 0.00016 32.9 3.9 38 32-70 3-46 (133)
27 1twf_I B12.6, DNA-directed RNA 65.4 3.1 0.0001 34.8 2.3 42 285-327 72-113 (122)
28 1tfi_A Transcriptional elongat 63.5 7.7 0.00026 27.6 3.8 38 31-70 9-47 (50)
29 2g2k_A EIF-5, eukaryotic trans 61.8 4.6 0.00016 36.0 2.9 34 286-325 97-130 (170)
30 1twf_I B12.6, DNA-directed RNA 60.8 6.6 0.00022 32.7 3.5 43 30-73 71-113 (122)
31 2e9h_A EIF-5, eukaryotic trans 60.7 3.9 0.00013 36.0 2.2 34 286-325 104-137 (157)
32 2kdx_A HYPA, hydrogenase/ureas 59.5 4 0.00014 33.6 1.9 36 31-79 73-109 (119)
33 3h0g_L DNA-directed RNA polyme 59.4 2.3 8E-05 32.0 0.5 29 284-324 20-48 (63)
34 1nlt_A Protein YDJ1, mitochond 56.9 38 0.0013 31.1 8.4 39 32-73 55-93 (248)
35 1nui_A DNA primase/helicase; z 56.8 6.5 0.00022 35.9 3.1 32 282-323 11-42 (255)
36 2d74_B Translation initiation 56.7 2 6.7E-05 37.6 -0.4 32 286-325 105-136 (148)
37 1pqv_S STP-alpha, transcriptio 56.3 6.7 0.00023 37.7 3.2 40 285-325 268-307 (309)
38 1ffk_W Ribosomal protein L37AE 54.0 8.4 0.00029 29.8 2.8 36 31-81 27-62 (73)
39 3qt1_I DNA-directed RNA polyme 53.8 2.7 9.3E-05 35.9 0.0 41 285-326 92-132 (133)
40 1nee_A EIF-2-beta, probable tr 53.6 2.7 9.1E-05 36.3 -0.1 32 286-325 103-134 (138)
41 3cc2_Z 50S ribosomal protein L 53.6 7.2 0.00025 32.8 2.5 40 281-335 56-95 (116)
42 3cc2_Z 50S ribosomal protein L 53.0 5.9 0.0002 33.3 1.9 36 31-81 60-95 (116)
43 1ffk_W Ribosomal protein L37AE 52.4 6.7 0.00023 30.3 2.0 40 281-335 23-62 (73)
44 3j21_i 50S ribosomal protein L 51.8 7.8 0.00027 30.7 2.3 36 31-81 35-70 (83)
45 3po3_S Transcription elongatio 49.9 3.6 0.00012 36.7 0.1 40 285-325 137-176 (178)
46 2jrp_A Putative cytoplasmic pr 49.8 18 0.00061 28.5 4.1 41 287-327 4-44 (81)
47 3iz5_m 60S ribosomal protein L 49.6 8.8 0.0003 31.0 2.4 35 32-81 37-71 (92)
48 2kdx_A HYPA, hydrogenase/ureas 49.2 4.8 0.00016 33.1 0.8 39 283-334 71-110 (119)
49 3qt1_I DNA-directed RNA polyme 47.8 4.2 0.00014 34.7 0.2 42 29-72 90-132 (133)
50 3izc_m 60S ribosomal protein R 47.2 10 0.00036 30.5 2.5 36 31-81 36-71 (92)
51 2jne_A Hypothetical protein YF 44.4 18 0.00062 29.5 3.5 50 284-333 31-80 (101)
52 2ctt_A DNAJ homolog subfamily 41.6 29 0.00099 27.4 4.3 33 32-71 46-78 (104)
53 1nlt_A Protein YDJ1, mitochond 41.1 32 0.0011 31.7 5.1 34 286-322 55-88 (248)
54 2e9h_A EIF-5, eukaryotic trans 41.0 13 0.00045 32.6 2.3 33 32-70 104-136 (157)
55 3agx_A DNAJ homolog subfamily 40.4 1.5E+02 0.005 25.8 9.2 91 29-133 25-140 (181)
56 1u9d_A Hypothetical protein VC 40.3 88 0.003 26.1 7.3 53 160-218 33-86 (122)
57 4a17_Y RPL37A, 60S ribosomal p 39.9 9.4 0.00032 31.4 1.1 35 32-81 37-71 (103)
58 1nui_A DNA primase/helicase; z 39.7 18 0.0006 33.0 3.1 31 29-69 12-42 (255)
59 2e2z_A TIM15; protein import, 38.3 10 0.00036 31.0 1.2 29 55-84 8-36 (100)
60 3r8s_0 50S ribosomal protein L 38.0 11 0.00038 27.5 1.2 27 31-73 27-53 (56)
61 2g2k_A EIF-5, eukaryotic trans 37.8 18 0.00062 32.1 2.8 34 32-71 97-130 (170)
62 2lcq_A Putative toxin VAPC6; P 37.3 9 0.00031 32.9 0.7 31 280-323 127-157 (165)
63 3jyw_9 60S ribosomal protein L 37.3 8.9 0.0003 29.6 0.6 36 31-81 26-61 (72)
64 2ctt_A DNAJ homolog subfamily 36.8 27 0.00094 27.6 3.5 32 285-323 45-76 (104)
65 4e2x_A TCAB9; kijanose, tetron 35.8 16 0.00054 35.2 2.2 40 285-325 12-64 (416)
66 1wii_A Hypothetical UPF0222 pr 34.5 17 0.0006 28.7 1.9 36 285-325 23-58 (85)
67 2m0e_A Zinc finger and BTB dom 33.4 14 0.00049 20.3 1.0 11 61-71 3-13 (29)
68 2kvh_A Zinc finger and BTB dom 33.0 14 0.00048 20.5 0.8 11 61-71 4-14 (27)
69 1zso_A Hypothetical protein; s 32.6 28 0.00096 30.6 3.1 47 280-326 32-82 (164)
70 1pqv_S STP-alpha, transcriptio 31.9 33 0.0011 32.8 3.8 38 31-70 268-306 (309)
71 1rik_A E6APC1 peptide; E6-bind 31.4 15 0.00052 20.4 0.8 11 61-71 3-13 (29)
72 1pft_A TFIIB, PFTFIIBN; N-term 31.2 33 0.0011 23.6 2.7 29 286-325 6-35 (50)
73 3pwf_A Rubrerythrin; non heme 31.2 24 0.00082 30.9 2.4 28 286-327 139-166 (170)
74 2lvu_A Zinc finger and BTB dom 37.1 10 0.00035 20.8 0.0 12 61-72 3-14 (26)
75 2apo_B Ribosome biogenesis pro 30.7 19 0.00065 26.8 1.4 9 317-325 21-29 (60)
76 3cw2_K Translation initiation 30.7 12 0.00042 32.1 0.4 32 286-325 104-135 (139)
77 1ard_A Yeast transcription fac 30.6 18 0.00062 20.0 1.1 11 61-71 3-13 (29)
78 1paa_A Yeast transcription fac 30.5 17 0.0006 20.3 1.0 11 61-71 3-13 (30)
79 1nee_A EIF-2-beta, probable tr 30.3 15 0.00051 31.5 0.9 32 32-71 103-134 (138)
80 1znf_A 31ST zinc finger from X 30.2 18 0.00061 19.7 1.0 11 61-71 2-12 (27)
81 1x3z_A Peptide: N-glycanase; h 29.3 53 0.0018 32.1 4.7 38 32-69 120-164 (335)
82 2kvf_A Zinc finger and BTB dom 29.0 18 0.00063 20.0 0.9 11 61-71 4-14 (28)
83 1p7a_A BF3, BKLF, kruppel-like 28.3 21 0.00071 21.3 1.1 11 61-71 12-22 (37)
84 2m0d_A Zinc finger and BTB dom 27.9 20 0.0007 19.7 1.0 11 61-71 4-14 (30)
85 2d74_B Translation initiation 27.8 15 0.00053 31.8 0.6 32 32-71 105-136 (148)
86 1klr_A Zinc finger Y-chromosom 27.6 20 0.00067 19.8 0.8 11 61-71 3-13 (30)
87 1exk_A DNAJ protein; extended 27.3 71 0.0024 23.5 4.2 33 31-70 28-60 (79)
88 2elx_A Zinc finger protein 406 27.0 20 0.0007 20.9 0.9 11 61-71 8-18 (35)
89 1yuz_A Nigerythrin; rubrythrin 26.7 25 0.00086 31.6 1.8 28 285-326 171-198 (202)
90 2m0f_A Zinc finger and BTB dom 26.5 22 0.00075 19.5 0.9 11 61-71 3-13 (29)
91 3cng_A Nudix hydrolase; struct 26.4 28 0.00095 29.8 1.9 32 32-70 4-35 (189)
92 1l8d_A DNA double-strand break 26.2 16 0.00056 29.1 0.4 12 285-296 47-58 (112)
93 2zkr_2 60S ribosomal protein L 26.2 25 0.00084 28.6 1.4 35 283-331 14-48 (97)
94 2xzf_A Formamidopyrimidine-DNA 26.1 39 0.0013 31.6 3.0 28 32-68 243-270 (271)
95 4esj_A Type-2 restriction enzy 26.0 17 0.00058 34.2 0.5 38 31-77 34-72 (257)
96 4e2x_A TCAB9; kijanose, tetron 25.7 40 0.0014 32.2 3.2 39 32-71 13-64 (416)
97 2hf1_A Tetraacyldisaccharide-1 25.7 18 0.0006 27.4 0.5 28 286-324 9-36 (68)
98 2jr6_A UPF0434 protein NMA0874 25.6 9.4 0.00032 28.9 -1.1 27 287-324 10-36 (68)
99 2akl_A PHNA-like protein PA012 24.9 22 0.00075 30.6 0.9 34 280-325 22-55 (138)
100 1rim_A E6APC2 peptide; E6-bind 24.8 24 0.00081 20.9 0.9 12 61-72 3-14 (33)
101 2dvk_A UPF0130 protein APE0816 24.7 1.6E+02 0.0054 26.3 6.6 75 65-172 112-186 (188)
102 2kvg_A Zinc finger and BTB dom 24.6 17 0.00058 20.3 0.2 11 61-71 4-14 (27)
103 3i3t_A Ubiquitin carboxyl-term 24.5 40 0.0014 31.0 2.8 80 30-113 172-275 (355)
104 2js4_A UPF0434 protein BB2007; 24.4 18 0.00063 27.4 0.4 27 287-324 10-36 (70)
105 1x3z_A Peptide: N-glycanase; h 24.0 78 0.0027 30.9 4.8 40 285-324 119-165 (335)
106 2elt_A Zinc finger protein 406 23.9 25 0.00084 20.7 0.8 11 61-71 10-20 (36)
107 2fiy_A Protein FDHE homolog; F 23.8 43 0.0015 32.2 2.9 10 285-294 222-231 (309)
108 2kfq_A FP1; protein, de novo p 23.7 18 0.00061 21.3 0.1 12 61-72 3-14 (32)
109 2aus_D NOP10, ribosome biogene 23.6 28 0.00096 25.9 1.2 14 281-294 13-26 (60)
110 2elp_A Zinc finger protein 406 23.4 26 0.00087 20.9 0.8 12 60-71 9-20 (37)
111 2elm_A Zinc finger protein 406 23.2 27 0.00093 21.1 1.0 12 60-71 9-20 (37)
112 2jox_A Churchill protein; zinc 23.2 46 0.0016 27.3 2.5 47 21-69 47-93 (106)
113 2lvr_A Zinc finger and BTB dom 28.7 18 0.0006 20.2 0.0 13 60-72 3-15 (30)
114 1lko_A Rubrerythrin all-iron(I 22.8 41 0.0014 29.7 2.4 31 285-328 155-185 (191)
115 1srk_A Zinc finger protein ZFP 22.6 28 0.00096 20.4 0.9 11 61-71 8-18 (35)
116 2els_A Zinc finger protein 406 22.5 29 0.001 20.5 1.0 11 61-71 10-20 (36)
117 2elv_A Zinc finger protein 406 22.3 28 0.00097 20.6 0.9 11 61-71 10-20 (36)
118 2pk7_A Uncharacterized protein 22.3 13 0.00043 28.3 -0.9 27 287-324 10-36 (69)
119 1nj3_A NPL4; NZF domain, rubre 22.1 24 0.00081 22.2 0.5 14 60-73 6-19 (31)
120 1ee8_A MUTM (FPG) protein; bet 22.1 40 0.0014 31.5 2.2 28 32-68 236-263 (266)
121 2elq_A Zinc finger protein 406 21.3 30 0.001 20.5 0.8 11 61-71 10-20 (36)
122 3l0r_A Cystatin-2, OMC2; SOFT 21.2 90 0.0031 25.2 4.0 29 39-67 84-112 (115)
123 2elr_A Zinc finger protein 406 21.1 34 0.0012 20.1 1.1 11 61-71 10-20 (36)
124 2jox_A Churchill protein; zinc 21.0 60 0.002 26.6 2.7 43 279-323 51-93 (106)
125 3vhs_A ATPase wrnip1; zinc fin 20.9 26 0.00088 22.0 0.4 12 283-294 4-15 (29)
126 2lvt_A Zinc finger and BTB dom 26.0 21 0.00072 19.9 0.0 13 60-72 2-14 (29)
127 1vd4_A Transcription initiatio 20.1 43 0.0015 23.1 1.6 44 32-79 15-58 (62)
128 2x5c_A Hypothetical protein OR 20.1 47 0.0016 27.1 2.0 17 283-299 50-66 (131)
No 1
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=100.00 E-value=3.7e-107 Score=815.14 Aligned_cols=295 Identities=44% Similarity=0.785 Sum_probs=276.1
Q ss_pred EEeccCCCCCCCceEEEEEeecCCcceEEEEEeeCCCCCCCccceeeCcccCCcceEEEEEeeCCCcccccceeeeecce
Q 017546 29 QVESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEIQPRGCNYSLKVPSSDQKMFHRQVVKSESA 108 (369)
Q Consensus 29 eies~Cp~Cg~~g~tr~llt~IP~FkeiiImSf~C~~CGyrnnEVq~~g~i~~kG~r~tL~V~~~~~~DLnR~VvKS~~a 108 (369)
.++|+||+||++|.|||++|+||||||||||||.|+||||||||||++|+++|||+||+|+|+ +++|||||||||++|
T Consensus 10 ~~~s~Cp~C~~~g~t~~~~~~IP~F~eVii~Sf~C~~CGyrn~ev~~~g~~~pkG~r~tL~V~--~~~DLnr~VvKS~ta 87 (404)
T 2qkd_A 10 SIESLCMNCYRNGTTRLLLTKIPFFREIIVSSFSCEHCGWNNTEIQSAGRIQDQGVRYTLTVR--SQEDMNREVVKTDSA 87 (404)
T ss_dssp -CEEECTTTSSEEEEEEEEEEETTTEEEEEEEEECTTTCCEEEEEEEEESSCSSEEEEEEEEC--SHHHHTCEEEECTTC
T ss_pred CccccCCCCCCCceEEEEEEcCCCCceEEEEEEECCCCCCchheeeECcccCCCcEEEEEEEC--ChhcccceEEEcCCc
Confidence 578999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred EEEeecceeEeCCCCCcceEEehHHHHHHHHHHHHHhhHhhhcCCHHHHHHHHHHHHHHHHhhcCCCceEEEEeCCCCCc
Q 017546 109 TIKIPELDFEIPPEAQRGSLSTVEGILVRAADELEALQEERKKLDPQTAEAIDQFLLKLRACAKGDSTFTFILDDPAGNS 188 (369)
Q Consensus 109 ti~IPELd~eI~p~~~~G~iTTVEGlL~~i~~~L~~~~~~r~~~~~e~~~ki~~~i~kL~~~~~g~~pFTliidDPsGNS 188 (369)
+|+||||+|||||++++|+||||||+|.+++++|+..|+.|++.+|+.++||++|+++|+++++|+.|||||||||+|||
T Consensus 88 ti~IPEL~~eI~pg~~~G~iTTVEGlL~~~~~~L~~~~~~r~~~~~e~~~ki~~~i~kL~~~~~g~~pfTliidDP~GnS 167 (404)
T 2qkd_A 88 TTRIPELDFEIPAFSQKGALTTVEGLISRAISGLEQDQPTRRAVEGAIAERIDEFIGKLKDLKQMASPFTLVIDDPSGNS 167 (404)
T ss_dssp EEEEGGGTEEECTTSSCCEEEEHHHHHHHHHHHHHTTHHHHHHHCHHHHHHHHHHHHHHHHGGGCSSCEEEEEEETTSCC
T ss_pred EEEeeeeeEEecCccCCceEEeHHHHHHHHHHHHHhhhhhhcccCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECCCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceecCCCCCCCCCeEEEEecCCHHHHHHcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCccccccccccccCCchhh
Q 017546 189 FIENLYAPSPDPSLNIKFYERTPEQQALLGYLVDPSQQGESSNVVPSEGLSSTSDKREPRGSVGAVAGHRAIAQSNSAEI 268 (369)
Q Consensus 189 ~I~~~~ap~~Dp~~~~~~y~Rt~eqn~~LGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (369)
||+++++|++||+|++++|+||+|||++|||.++++.... . ..+
T Consensus 168 ~I~~~~~p~~d~~~~~~~y~Rt~eqn~~LGl~~~~~~~~~-------------------------------~--~~d--- 211 (404)
T 2qkd_A 168 FVENPHAPQKDNALVITYYDRTPQQAEMLGLQAEAPEEKA-------------------------------E--EED--- 211 (404)
T ss_dssp EECCTTTTSCCTTEEEEEECCCHHHHHHTTC-------------------------------------------CCC---
T ss_pred eeecCCCCCCCCceEEEEcCCCHHHHHhcCCCcccccccc-------------------------------c--ccc---
Confidence 9999999999999999999999999999999864321000 0 000
Q ss_pred hhhhhccCCCcceeeeeccCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCCccccccCCccCCCceEEEEEecCcC
Q 017546 269 ADALFRYSAPEEVMTFPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSELKPGGRIPEKGKRITLFVKNIN 348 (369)
Q Consensus 269 ~~~~~~~~~~~ev~~~~~~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk~~eVk~~g~~~~~g~ritl~V~~~~ 348 (369)
..+ +|++|++.||+||+++.++|++++|||||+||||||.|++||||+||||+||+++|+|+||||+|++++
T Consensus 212 ~~~--------ev~~~~s~Cp~C~~~~~t~~~~~~IP~F~eViims~~C~~CGyr~neVk~~g~i~~~G~ritL~V~~~~ 283 (404)
T 2qkd_A 212 LRN--------EVLQFNTNCPECNAPAQTNMKLVQIPHFKEVIIMATNCENCGHRTNEVKSGGAVEPLGTRITLHITDPS 283 (404)
T ss_dssp CCC--------CEEEEEECCTTTCCTTCEEEEEECCTTSCCEEEEEEECSSSCCEEEEEEECSSSCCCEEEEEEEECSGG
T ss_pred ccc--------ceeeecccCccCCCccEEEEEEEeCCCCCcEEEEEEECCCCCCcccceeeccccCCCcEEEEEEECChH
Confidence 113 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeeeecceeEEecccCC
Q 017546 349 DLSRDLIKVCNGAIQLISIAV 369 (369)
Q Consensus 349 DL~r~VlkS~ta~i~IPElg~ 369 (369)
||+|+||||+||+|+|||||+
T Consensus 284 DL~R~VvKS~ta~i~IPEL~l 304 (404)
T 2qkd_A 284 DMTRDLLKSETCSVEIPELEF 304 (404)
T ss_dssp GGGCEEEECTTCEEEEGGGTE
T ss_pred HccceeEecCceEEEeeeeeE
Confidence 999999999999999999985
No 2
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=100.00 E-value=2.4e-67 Score=527.16 Aligned_cols=193 Identities=33% Similarity=0.629 Sum_probs=187.1
Q ss_pred CCCCCceEEeccCCCCCCCceEEEEEeecCCcceEEEEEeeCCCCCCCccceeeCcccCCcceEEEEEeeCCCcccccce
Q 017546 22 DSDAPLYQVESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEIQPRGCNYSLKVPSSDQKMFHRQ 101 (369)
Q Consensus 22 ~~~~~v~eies~Cp~Cg~~g~tr~llt~IP~FkeiiImSf~C~~CGyrnnEVq~~g~i~~kG~r~tL~V~~~~~~DLnR~ 101 (369)
+.+.+|+++++.||+||++|.|||++|+||||||||||||.|+||||||||||++|+++|+|+||||+|+ +++||+|+
T Consensus 211 d~~~ev~~~~s~Cp~C~~~~~t~~~~~~IP~F~eViims~~C~~CGyr~neVk~~g~i~~~G~ritL~V~--~~~DL~R~ 288 (404)
T 2qkd_A 211 DLRNEVLQFNTNCPECNAPAQTNMKLVQIPHFKEVIIMATNCENCGHRTNEVKSGGAVEPLGTRITLHIT--DPSDMTRD 288 (404)
T ss_dssp CCCCCEEEEEECCTTTCCTTCEEEEEECCTTSCCEEEEEEECSSSCCEEEEEEECSSSCCCEEEEEEEEC--SGGGGGCE
T ss_pred ccccceeeecccCccCCCccEEEEEEEeCCCCCcEEEEEEECCCCCCcccceeeccccCCCcEEEEEEEC--ChHHccce
Confidence 3457999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred eeeecceEEEeecceeEeCCCCCcceEEehHHHHHHHHHHHHHhh-HhhhcCCHHHHHHHHHHHHHHHHhhcCCCceEEE
Q 017546 102 VVKSESATIKIPELDFEIPPEAQRGSLSTVEGILVRAADELEALQ-EERKKLDPQTAEAIDQFLLKLRACAKGDSTFTFI 180 (369)
Q Consensus 102 VvKS~~ati~IPELd~eI~p~~~~G~iTTVEGlL~~i~~~L~~~~-~~r~~~~~e~~~ki~~~i~kL~~~~~g~~pFTli 180 (369)
||||++|+|+||||+|||+|++++|+||||||||.+++++|+..+ ..|++++++.++||++|+++|+++++|+.|||||
T Consensus 289 VvKS~ta~i~IPEL~lei~pg~~~G~~TTVEGlL~~i~d~L~~~~~~~~ds~~~~~~~k~~~f~~kL~~~~~g~~pfTli 368 (404)
T 2qkd_A 289 LLKSETCSVEIPELEFELGMAVLGGKFTTLEGLLKDIRELVTKNPFTLGDSSNPDQSEKLQEFSQKLGQIIEGKMKAHFI 368 (404)
T ss_dssp EEECTTCEEEEGGGTEEECTTTTCSEEEEHHHHHHHHHHHHHSSCCCSSSCCCGGGCHHHHHHHHHHHHHHTTSSCEEEE
T ss_pred eEecCceEEEeeeeeEEecCCCCCceEEeHHHHHHHHHHHHhhcccccccCCCHHHHHHHHHHHHHHHHHHcCCCCeEEE
Confidence 999999999999999999999999999999999999999999987 5678889999999999999999999999999999
Q ss_pred EeCCCCCcceecCCCCCCCCCeEEEEecCCHHHHHH
Q 017546 181 LDDPAGNSFIENLYAPSPDPSLNIKFYERTPEQQAL 216 (369)
Q Consensus 181 idDPsGNS~I~~~~ap~~Dp~~~~~~y~Rt~eqn~~ 216 (369)
||||+|||||+|+++|++||+|++++|+||+|||++
T Consensus 369 idDP~GnS~I~~~~~p~~d~~l~~e~Y~RT~eqne~ 404 (404)
T 2qkd_A 369 MNDPAGNSYLQNVYAPEDDPEMKVERYKRTFDQNEE 404 (404)
T ss_dssp EEETTCCCEECCTTTTSCCTTEEEEEECCCCCTTTC
T ss_pred EECCCCCccccCCCCCCCCCCceEEEccCChHHccC
Confidence 999999999999999999999999999999999974
No 3
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=91.65 E-value=0.28 Score=35.69 Aligned_cols=42 Identities=14% Similarity=0.363 Sum_probs=25.6
Q ss_pred EeccCCCCCCCceEEEEEeecCCcceEEEEEeeCCCCCCCccc
Q 017546 30 VESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNE 72 (369)
Q Consensus 30 ies~Cp~Cg~~g~tr~llt~IP~FkeiiImSf~C~~CGyrnnE 72 (369)
....||.||.+ ........+--=.|-.-.-+.|.+||++-++
T Consensus 14 ~~~~Cp~Cg~~-~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~ 55 (57)
T 1qyp_A 14 TKITCPKCGND-TAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS 55 (57)
T ss_dssp EECCCTTTCCS-EEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred eEeECCCCCCC-EEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence 46789999984 3333333321122334456899999998654
No 4
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=90.99 E-value=0.14 Score=37.32 Aligned_cols=41 Identities=17% Similarity=0.291 Sum_probs=25.8
Q ss_pred eccCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCCccc
Q 017546 285 PSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSE 326 (369)
Q Consensus 285 ~~~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk~~e 326 (369)
...||.||+. ........+---.+-.-.-+.|.+||++.++
T Consensus 15 ~~~Cp~Cg~~-~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~ 55 (57)
T 1qyp_A 15 KITCPKCGND-TAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS 55 (57)
T ss_dssp ECCCTTTCCS-EEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred EeECCCCCCC-EEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence 5689999984 3333444442222333456789999999765
No 5
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=88.06 E-value=0.37 Score=37.08 Aligned_cols=41 Identities=17% Similarity=0.255 Sum_probs=23.1
Q ss_pred eccCccCcccccceeEEEecCC--CCeEE-E---EEeeCCCCCCCccc
Q 017546 285 PSTCGACAASCETRMFMTRIPY--FQEVI-V---MASTCDACGYRNSE 326 (369)
Q Consensus 285 ~~~Cp~C~~~~~~~m~~~~IP~--F~evi-i---ms~~C~~CGyk~~e 326 (369)
.++||.||..- +....+++|| =|..+ | -++.|+.||-..-+
T Consensus 2 ~m~Cp~Cg~~~-l~~~~~~~~~~~~G~~~~I~~Vp~~~C~~CGE~~~~ 48 (78)
T 3ga8_A 2 HMKCPVCHQGE-MVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMN 48 (78)
T ss_dssp -CBCTTTSSSB-EEEEEEEEEEEETTEEEEEEEEEEEEETTTCCEECC
T ss_pred ceECCCCCCCe-eEeEEEEEEEEECCEEEEEcCceeEECCCCCCEEEC
Confidence 36899998641 2222222222 23333 2 37899999976544
No 6
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=85.31 E-value=0.29 Score=32.89 Aligned_cols=31 Identities=26% Similarity=0.594 Sum_probs=22.1
Q ss_pred cCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCCcc
Q 017546 287 TCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNS 325 (369)
Q Consensus 287 ~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk~~ 325 (369)
.||.|+.+ +|.+..- +.. +...|..||+++.
T Consensus 2 lC~~C~~p-eT~l~~~-----~~~--~~l~C~aCG~~~~ 32 (36)
T 1k81_A 2 ICRECGKP-DTKIIKE-----GRV--HLLKCMACGAIRP 32 (36)
T ss_dssp CCSSSCSC-EEEEEEE-----TTE--EEEEEETTTEEEE
T ss_pred CCcCCCCC-CcEEEEe-----CCc--EEEEhhcCCCccc
Confidence 69999998 6666542 233 4478999999753
No 7
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=84.64 E-value=0.33 Score=36.28 Aligned_cols=22 Identities=36% Similarity=0.816 Sum_probs=17.6
Q ss_pred ccCCCCCCCceEEEEEeecCCcceEEEEEeeCCCCCCC
Q 017546 32 SLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGER 69 (369)
Q Consensus 32 s~Cp~Cg~~g~tr~llt~IP~FkeiiImSf~C~~CGyr 69 (369)
+.||+||+ ...|| ..|++|||=
T Consensus 31 ~~c~~cGe--------~~~~H--------~vc~~CG~Y 52 (60)
T 3v2d_5 31 VPCPECKA--------MKPPH--------TVCPECGYY 52 (60)
T ss_dssp EECTTTCC--------EECTT--------SCCTTTCEE
T ss_pred eECCCCCC--------eecce--------EEcCCCCcC
Confidence 56999987 45688 679999973
No 8
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=84.33 E-value=0.65 Score=38.15 Aligned_cols=42 Identities=12% Similarity=0.162 Sum_probs=24.3
Q ss_pred eccCccCccc-ccceeEEEecCCCCeEEE----EEeeCCCCCCCccc
Q 017546 285 PSTCGACAAS-CETRMFMTRIPYFQEVIV----MASTCDACGYRNSE 326 (369)
Q Consensus 285 ~~~Cp~C~~~-~~~~m~~~~IP~F~evii----ms~~C~~CGyk~~e 326 (369)
.+.||.||+. .......+.+.|=|+.+. -.+.|+.||-..-+
T Consensus 2 ~M~Cp~Cg~~~~~~~~~~~~~~~kg~~~~v~~v~~~~C~~CGE~~~d 48 (133)
T 3o9x_A 2 HMKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMN 48 (133)
T ss_dssp CCBCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEESSSSCEECC
T ss_pred CcCCCcCCCCceeeceEEEEEEECCEEEEECCCceeECCCCCCEeec
Confidence 4689999876 322223333333344333 36899999965443
No 9
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=83.76 E-value=0.62 Score=34.10 Aligned_cols=34 Identities=18% Similarity=0.455 Sum_probs=24.0
Q ss_pred ceeeeeccCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCCc
Q 017546 280 EVMTFPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRN 324 (369)
Q Consensus 280 ev~~~~~~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk~ 324 (369)
.|....-.||.||...... +||. .+.|..|||..
T Consensus 13 ki~~~~~fCPkCG~~~~ma------~~~d-----r~~C~kCgyt~ 46 (55)
T 2k4x_A 13 KLVRKHRFCPRCGPGVFLA------EHAD-----RYSCGRCGYTE 46 (55)
T ss_dssp CCCCSSCCCTTTTTTCCCE------ECSS-----EEECTTTCCCE
T ss_pred EEEEccccCcCCCCceeEe------ccCC-----EEECCCCCCEE
Confidence 4555566799999864211 5564 78999999973
No 10
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=83.73 E-value=0.25 Score=35.39 Aligned_cols=29 Identities=24% Similarity=0.564 Sum_probs=18.2
Q ss_pred cCCCCCCCceEEEEEeecCCcceEEEEEeeCCCCCCCc
Q 017546 33 LCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERN 70 (369)
Q Consensus 33 ~Cp~Cg~~g~tr~llt~IP~FkeiiImSf~C~~CGyrn 70 (369)
.|+.||..-. ..-|-.. ....||.||||-
T Consensus 5 ~C~rCg~~fs-~~el~~l--------P~IrCpyCGyri 33 (48)
T 4ayb_P 5 RCGKCWKTFT-DEQLKVL--------PGVRCPYCGYKI 33 (48)
T ss_dssp CCCCTTTTCC-CCCSCCC--------SSSCCTTTCCSC
T ss_pred EeeccCCCcc-HHHHhhC--------CCcccCccCcEE
Confidence 5999987632 2222222 347899999984
No 11
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=81.17 E-value=1.6 Score=31.27 Aligned_cols=41 Identities=24% Similarity=0.380 Sum_probs=24.8
Q ss_pred eeeccCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCCc
Q 017546 283 TFPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRN 324 (369)
Q Consensus 283 ~~~~~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk~ 324 (369)
.-...||.||+.- .......+=--.|=.-.-+.|-+|||+.
T Consensus 7 t~~~~Cp~Cg~~~-a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w 47 (50)
T 1tfi_A 7 TDLFTCGKCKKKN-CTYTQVQTRSADEPMTTFVVCNECGNRW 47 (50)
T ss_dssp CCCSCCSSSCSSC-EEEEEECSSSSSSCCEEEEEESSSCCEE
T ss_pred eCccCCCCCCCCE-EEEEEecCcCCCCCceEEEEcCCCCCeE
Confidence 3456899999762 2223333322334445567899999975
No 12
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=81.07 E-value=0.86 Score=32.68 Aligned_cols=34 Identities=24% Similarity=0.486 Sum_probs=23.1
Q ss_pred ceeeeeccCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCCc
Q 017546 280 EVMTFPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRN 324 (369)
Q Consensus 280 ev~~~~~~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk~ 324 (369)
.|....--||.||+... | .||++ ...|..|||-.
T Consensus 14 kv~~~~k~CP~CG~~~f--m----~~~~~-----R~~C~kCG~t~ 47 (50)
T 3j20_Y 14 KVIRKNKFCPRCGPGVF--M----ADHGD-----RWACGKCGYTE 47 (50)
T ss_dssp CEECSSEECSSSCSSCE--E----EECSS-----EEECSSSCCEE
T ss_pred EEEEecccCCCCCCceE--E----ecCCC-----eEECCCCCCEE
Confidence 34445556999998642 2 25654 47999999954
No 13
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=80.78 E-value=0.57 Score=34.98 Aligned_cols=22 Identities=32% Similarity=0.872 Sum_probs=17.6
Q ss_pred ccCCCCCCCceEEEEEeecCCcceEEEEEeeCCCCCCC
Q 017546 32 SLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGER 69 (369)
Q Consensus 32 s~Cp~Cg~~g~tr~llt~IP~FkeiiImSf~C~~CGyr 69 (369)
+.||+||+. ..|| ..|++|||=
T Consensus 31 ~~c~~cG~~--------~~pH--------~vc~~CG~Y 52 (60)
T 2zjr_Z 31 TECPQCHGK--------KLSH--------HICPNCGYY 52 (60)
T ss_dssp EECTTTCCE--------ECTT--------BCCTTTCBS
T ss_pred eECCCCCCE--------eCCc--------eEcCCCCcC
Confidence 469999864 5688 899999974
No 14
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=80.64 E-value=0.32 Score=35.34 Aligned_cols=31 Identities=26% Similarity=0.503 Sum_probs=22.2
Q ss_pred ceeeeeccCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCCcc
Q 017546 280 EVMTFPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNS 325 (369)
Q Consensus 280 ev~~~~~~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk~~ 325 (369)
+.+--...||.|++... .-++.|.+|||+.-
T Consensus 9 ~r~~~k~iCpkC~a~~~---------------~gaw~CrKCG~~~l 39 (51)
T 3j21_g 9 ARIFKKYVCLRCGATNP---------------WGAKKCRKCGYKRL 39 (51)
T ss_dssp HHSSSEEECTTTCCEEC---------------TTCSSCSSSSSCCC
T ss_pred HHHhCCccCCCCCCcCC---------------CCceecCCCCCccc
Confidence 44455678999998622 23689999999843
No 15
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=80.30 E-value=0.069 Score=42.63 Aligned_cols=40 Identities=23% Similarity=0.476 Sum_probs=25.7
Q ss_pred eeccCccCccccccee---EEEecCCCCeEE-----------EEEeeCCCCCCC
Q 017546 284 FPSTCGACAASCETRM---FMTRIPYFQEVI-----------VMASTCDACGYR 323 (369)
Q Consensus 284 ~~~~Cp~C~~~~~~~m---~~~~IP~F~evi-----------ims~~C~~CGyk 323 (369)
-.++||.||+++...- .+..+--|.+++ -.+|.|++||--
T Consensus 7 ~~~~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP~CgEE 60 (95)
T 2k5c_A 7 HMAKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEE 60 (95)
T ss_dssp -CEECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECTTTCCE
T ss_pred ccccCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCCCccHH
Confidence 3568999999876543 333444444433 468999999953
No 16
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=79.83 E-value=1.5 Score=36.19 Aligned_cols=42 Identities=19% Similarity=0.344 Sum_probs=26.3
Q ss_pred EEeccCCCCCCCceEE-EEEeecCCcceEEEEEeeCCCCCCCccc
Q 017546 29 QVESLCMRCGENGVTR-FLLTLIPHFRKVLLSAFECPHCGERNNE 72 (369)
Q Consensus 29 eies~Cp~Cg~~g~tr-~llt~IP~FkeiiImSf~C~~CGyrnnE 72 (369)
.....||.||.+..+- .+.++- -.|-.-.-|.|.+||++-.|
T Consensus 70 ~~~~~Cp~C~~~~a~~~q~q~rs--ade~mt~fy~C~~C~~~w~~ 112 (113)
T 3h0g_I 70 RSDKECPRCHQHEAVFYQTHSRR--GDTMMTLIYVCVHCGFAFEE 112 (113)
T ss_dssp BCCSCCSSSCCSCEEEECCCCSS--CCCCCCCEEEESSSCCCCCC
T ss_pred CcccCCCCCCCceEEEEEEeccc--CCCCCeeEEEcCCCCCEEec
Confidence 3457899999764332 222222 23334445899999999765
No 17
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=79.55 E-value=0.088 Score=45.30 Aligned_cols=49 Identities=20% Similarity=0.353 Sum_probs=33.0
Q ss_pred eccCCCCCCCceEEE--------EEeecCCcceEEEEEeeCCCCCCCccceeeCccc
Q 017546 31 ESLCMRCGENGVTRF--------LLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEI 79 (369)
Q Consensus 31 es~Cp~Cg~~g~tr~--------llt~IP~FkeiiImSf~C~~CGyrnnEVq~~g~i 79 (369)
...|.+||......- ..-.+=|+.|++...+.||+||-.+-+|..|.++
T Consensus 70 ~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~~i~~G~el 126 (139)
T 3a43_A 70 VFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDFEVVKGRGV 126 (139)
T ss_dssp EEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCEEEEESSCE
T ss_pred cEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCccEEecCCeE
Confidence 577999987643211 0001334556666668899999999999888776
No 18
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=78.99 E-value=0.85 Score=36.12 Aligned_cols=36 Identities=31% Similarity=0.639 Sum_probs=24.9
Q ss_pred eccCCCCCCCceEEEEEeecCCcceEEEEEeeCCCCCCCccceeeCcccCC
Q 017546 31 ESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEIQP 81 (369)
Q Consensus 31 es~Cp~Cg~~g~tr~llt~IP~FkeiiImSf~C~~CGyrnnEVq~~g~i~~ 81 (369)
.-.||+||++...+.- +. .+.|++||+.. .+|+..|
T Consensus 27 ~y~Cp~CG~~~v~r~a-tG----------iW~C~~Cg~~~----aggay~~ 62 (83)
T 1vq8_Z 27 DHACPNCGEDRVDRQG-TG----------IWQCSYCDYKF----TGGSYKP 62 (83)
T ss_dssp CEECSSSCCEEEEEEE-TT----------EEEETTTCCEE----ECCSSSS
T ss_pred cCcCCCCCCcceeccC-CC----------eEECCCCCCEe----cCCEecc
Confidence 4579999986544433 22 38999999954 5776665
No 19
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=77.24 E-value=1.7 Score=31.08 Aligned_cols=33 Identities=24% Similarity=0.598 Sum_probs=21.7
Q ss_pred CceEEeccCCCCCCCceEEEEEeecCCcceEEEEEeeCCCCCCC
Q 017546 26 PLYQVESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGER 69 (369)
Q Consensus 26 ~v~eies~Cp~Cg~~g~tr~llt~IP~FkeiiImSf~C~~CGyr 69 (369)
.|.-.--.||.||...... |++. .+.|+.|||.
T Consensus 14 kv~~~~k~CP~CG~~~fm~------~~~~-----R~~C~kCG~t 46 (50)
T 3j20_Y 14 KVIRKNKFCPRCGPGVFMA------DHGD-----RWACGKCGYT 46 (50)
T ss_dssp CEECSSEECSSSCSSCEEE------ECSS-----EEECSSSCCE
T ss_pred EEEEecccCCCCCCceEEe------cCCC-----eEECCCCCCE
Confidence 3444445699999754222 4553 5899999995
No 20
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=75.86 E-value=2.7 Score=32.08 Aligned_cols=38 Identities=18% Similarity=0.321 Sum_probs=21.6
Q ss_pred ccCCCCCCCce---EEEEEeecCCcceEE-E---EEeeCCCCCCCcc
Q 017546 32 SLCMRCGENGV---TRFLLTLIPHFRKVL-L---SAFECPHCGERNN 71 (369)
Q Consensus 32 s~Cp~Cg~~g~---tr~llt~IP~Fkeii-I---mSf~C~~CGyrnn 71 (369)
..||.||.... ++-..+.. =+..+ | -...|++||-..-
T Consensus 3 m~Cp~Cg~~~l~~~~~~~~~~~--~G~~~~I~~Vp~~~C~~CGE~~~ 47 (78)
T 3ga8_A 3 MKCPVCHQGEMVSGIKDIPYTF--RGRKTVLKGIHGLYCVHCEESIM 47 (78)
T ss_dssp CBCTTTSSSBEEEEEEEEEEEE--TTEEEEEEEEEEEEETTTCCEEC
T ss_pred eECCCCCCCeeEeEEEEEEEEE--CCEEEEEcCceeEECCCCCCEEE
Confidence 57999986422 22222222 23322 2 3689999997543
No 21
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=74.59 E-value=1.2 Score=36.77 Aligned_cols=42 Identities=17% Similarity=0.378 Sum_probs=25.3
Q ss_pred eccCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCCcccc
Q 017546 285 PSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSEL 327 (369)
Q Consensus 285 ~~~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk~~eV 327 (369)
...||.||+.-. ......+=--.|-.-.-+.|.+||||..|.
T Consensus 72 ~~~Cp~C~~~~a-~~~q~q~rsade~mt~fy~C~~C~~~w~~~ 113 (113)
T 3h0g_I 72 DKECPRCHQHEA-VFYQTHSRRGDTMMTLIYVCVHCGFAFEEQ 113 (113)
T ss_dssp CSCCSSSCCSCE-EEECCCCSSCCCCCCCEEEESSSCCCCCCC
T ss_pred ccCCCCCCCceE-EEEEEecccCCCCCeeEEEcCCCCCEEecC
Confidence 468999997622 222222222233344457899999998763
No 22
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=73.20 E-value=0.73 Score=36.52 Aligned_cols=39 Identities=21% Similarity=0.370 Sum_probs=25.7
Q ss_pred eeeeccCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCCccccccCCccCC
Q 017546 282 MTFPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSELKPGGRIPE 335 (369)
Q Consensus 282 ~~~~~~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk~~eVk~~g~~~~ 335 (369)
+...-.||.||++.. +-... -.+.|++||+. ..||+..|
T Consensus 24 q~~~y~Cp~CG~~~v---~r~at--------GiW~C~~Cg~~----~aggay~~ 62 (83)
T 1vq8_Z 24 MNEDHACPNCGEDRV---DRQGT--------GIWQCSYCDYK----FTGGSYKP 62 (83)
T ss_dssp HHSCEECSSSCCEEE---EEEET--------TEEEETTTCCE----EECCSSSS
T ss_pred ccccCcCCCCCCcce---eccCC--------CeEECCCCCCE----ecCCEecc
Confidence 344668999998642 22221 26899999995 45777666
No 23
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=73.11 E-value=0.37 Score=41.34 Aligned_cols=53 Identities=19% Similarity=0.312 Sum_probs=33.2
Q ss_pred eeeccCccCcccccceeE-------EEecCCC-CeEEEEEeeCCCCCCCccccccCCccCC
Q 017546 283 TFPSTCGACAASCETRMF-------MTRIPYF-QEVIVMASTCDACGYRNSELKPGGRIPE 335 (369)
Q Consensus 283 ~~~~~Cp~C~~~~~~~m~-------~~~IP~F-~eviims~~C~~CGyk~~eVk~~g~~~~ 335 (369)
.....|.+||........ .-.-.|| -+++-....|+.||....+|..|....=
T Consensus 68 p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~~i~~G~el~I 128 (139)
T 3a43_A 68 EAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDFEVVKGRGVYV 128 (139)
T ss_dssp CCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCEEEEESSCEEE
T ss_pred CCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCccEEecCCeEEE
Confidence 346789999987543220 0001122 2444445779999999999988876644
No 24
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=70.22 E-value=2.5 Score=30.87 Aligned_cols=33 Identities=27% Similarity=0.650 Sum_probs=22.4
Q ss_pred CceEEeccCCCCCCCceEEEEEeecCCcceEEEEEeeCCCCCCC
Q 017546 26 PLYQVESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGER 69 (369)
Q Consensus 26 ~v~eies~Cp~Cg~~g~tr~llt~IP~FkeiiImSf~C~~CGyr 69 (369)
.|...--.||.||.....- ++|. .+.|..|||.
T Consensus 13 ki~~~~~fCPkCG~~~~ma------~~~d-----r~~C~kCgyt 45 (55)
T 2k4x_A 13 KLVRKHRFCPRCGPGVFLA------EHAD-----RYSCGRCGYT 45 (55)
T ss_dssp CCCCSSCCCTTTTTTCCCE------ECSS-----EEECTTTCCC
T ss_pred EEEEccccCcCCCCceeEe------ccCC-----EEECCCCCCE
Confidence 3444557799999643111 4453 7999999996
No 25
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=67.75 E-value=0.84 Score=35.06 Aligned_cols=29 Identities=24% Similarity=0.551 Sum_probs=20.4
Q ss_pred eeccCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCCc
Q 017546 284 FPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRN 324 (369)
Q Consensus 284 ~~~~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk~ 324 (369)
+.-.|+.||...+.+. + .+..|.+||||.
T Consensus 27 v~Y~C~~CG~~~e~~~--------~----d~irCp~CG~RI 55 (70)
T 1twf_L 27 LKYICAECSSKLSLSR--------T----DAVRCKDCGHRI 55 (70)
T ss_dssp CCEECSSSCCEECCCT--------T----STTCCSSSCCCC
T ss_pred EEEECCCCCCcceeCC--------C----CCccCCCCCceE
Confidence 3447999999865541 2 235899999974
No 26
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=67.50 E-value=4.7 Score=32.87 Aligned_cols=38 Identities=24% Similarity=0.444 Sum_probs=21.2
Q ss_pred ccCCCCCCCce---EEEEEeecCCcceEEE---EEeeCCCCCCCc
Q 017546 32 SLCMRCGENGV---TRFLLTLIPHFRKVLL---SAFECPHCGERN 70 (369)
Q Consensus 32 s~Cp~Cg~~g~---tr~llt~IP~FkeiiI---mSf~C~~CGyrn 70 (369)
..||.||+... ++-..+.+=. .+++| -.+.|+.||-.-
T Consensus 3 M~Cp~Cg~~~~~~~~~~~~~~~kg-~~~~v~~v~~~~C~~CGE~~ 46 (133)
T 3o9x_A 3 MKCPVCHQGEMVSGIKDIPYTFRG-RKTVLKGIHGLYCVHCEESI 46 (133)
T ss_dssp CBCTTTSSSBEEEEEEEEEEEETT-EEEEEEEEEEEEESSSSCEE
T ss_pred cCCCcCCCCceeeceEEEEEEECC-EEEEECCCceeECCCCCCEe
Confidence 57999987632 2222333322 22222 368999999643
No 27
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=65.45 E-value=3.1 Score=34.77 Aligned_cols=42 Identities=14% Similarity=0.257 Sum_probs=25.2
Q ss_pred eccCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCCcccc
Q 017546 285 PSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSEL 327 (369)
Q Consensus 285 ~~~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk~~eV 327 (369)
...||.||+.- .......+=--.|=.-.-+.|-+|||+..+-
T Consensus 72 ~~~Cp~C~~~~-a~~~q~q~rsade~~t~fy~C~~C~~~w~~n 113 (122)
T 1twf_I 72 DRECPKCHSRE-NVFFQSQQRRKDTSMVLFFVCLSCSHIFTSD 113 (122)
T ss_dssp CCCCTTTCCCC-EEEEECSSCCTTCCCCEEEEETTTCCEEECC
T ss_pred CCCCCCCCCCE-EEEEEecCccCCCCceEEEEeCCCCCEeccC
Confidence 56899999762 2222333222233344557899999997663
No 28
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=63.48 E-value=7.7 Score=27.61 Aligned_cols=38 Identities=21% Similarity=0.368 Sum_probs=23.5
Q ss_pred eccCCCCCCCceE-EEEEeecCCcceEEEEEeeCCCCCCCc
Q 017546 31 ESLCMRCGENGVT-RFLLTLIPHFRKVLLSAFECPHCGERN 70 (369)
Q Consensus 31 es~Cp~Cg~~g~t-r~llt~IP~FkeiiImSf~C~~CGyrn 70 (369)
...||.||.+... -.+.++- -.|=.-.-|.|-.||++-
T Consensus 9 ~~~Cp~Cg~~~a~f~q~Q~Rs--aDE~mT~Fy~C~~Cg~~w 47 (50)
T 1tfi_A 9 LFTCGKCKKKNCTYTQVQTRS--ADEPMTTFVVCNECGNRW 47 (50)
T ss_dssp CSCCSSSCSSCEEEEEECSSS--SSSCCEEEEEESSSCCEE
T ss_pred ccCCCCCCCCEEEEEEecCcC--CCCCceEEEEcCCCCCeE
Confidence 4579999976433 2233332 234444558999999873
No 29
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=61.80 E-value=4.6 Score=36.00 Aligned_cols=34 Identities=29% Similarity=0.778 Sum_probs=23.2
Q ss_pred ccCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCCcc
Q 017546 286 STCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNS 325 (369)
Q Consensus 286 ~~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk~~ 325 (369)
+.||.|+.+ +|.+.... - +.+ +...|..||++..
T Consensus 97 VlC~~C~sP-dT~L~k~~--~-~r~--~~l~C~ACGa~~~ 130 (170)
T 2g2k_A 97 VLCPECENP-ETDLHVNP--K-KQT--IGNSCKACGYRGM 130 (170)
T ss_dssp HSCTTTSSS-CEEEEEET--T-TTE--EEEEETTTCCCCC
T ss_pred EECCCCCCC-ccEEEEec--C-CCE--EEEEccccCCccc
Confidence 579999999 66664421 0 233 3489999999864
No 30
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=60.77 E-value=6.6 Score=32.72 Aligned_cols=43 Identities=14% Similarity=0.253 Sum_probs=25.7
Q ss_pred EeccCCCCCCCceEEEEEeecCCcceEEEEEeeCCCCCCCccce
Q 017546 30 VESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEV 73 (369)
Q Consensus 30 ies~Cp~Cg~~g~tr~llt~IP~FkeiiImSf~C~~CGyrnnEV 73 (369)
+...||.||.+..+-+ ...+=--.|=.-.-|.|-.||++-.+-
T Consensus 71 t~~~Cp~C~~~~a~~~-q~q~rsade~~t~fy~C~~C~~~w~~n 113 (122)
T 1twf_I 71 SDRECPKCHSRENVFF-QSQQRRKDTSMVLFFVCLSCSHIFTSD 113 (122)
T ss_dssp CCCCCTTTCCCCEEEE-ECSSCCTTCCCCEEEEETTTCCEEECC
T ss_pred cCCCCCCCCCCEEEEE-EecCccCCCCceEEEEeCCCCCEeccC
Confidence 4678999997643322 222211223344458999999986553
No 31
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.67 E-value=3.9 Score=36.00 Aligned_cols=34 Identities=29% Similarity=0.751 Sum_probs=23.3
Q ss_pred ccCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCCcc
Q 017546 286 STCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNS 325 (369)
Q Consensus 286 ~~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk~~ 325 (369)
+.||.|+.+ +|.+... ++-=++...|..||++..
T Consensus 104 VlC~~C~sP-dT~L~~~-----~~~r~~~l~C~ACGa~~~ 137 (157)
T 2e9h_A 104 VLCPECENP-ETDLHVN-----PKKQTIGNSCKACGYRGM 137 (157)
T ss_dssp TSCTTTCCS-CCEEEEE-----TTTTEEEEECSSSCCEEE
T ss_pred EECCCCCCC-ccEEEEe-----cCCCEEEEEccCCCCCCc
Confidence 579999998 6666442 111245678999999753
No 32
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=59.48 E-value=4 Score=33.61 Aligned_cols=36 Identities=19% Similarity=0.368 Sum_probs=26.9
Q ss_pred eccCCCCCCCceEEEEEeecCCcceEEEEEe-eCCCCCCCccceeeCccc
Q 017546 31 ESLCMRCGENGVTRFLLTLIPHFRKVLLSAF-ECPHCGERNNEVQFAGEI 79 (369)
Q Consensus 31 es~Cp~Cg~~g~tr~llt~IP~FkeiiImSf-~C~~CGyrnnEVq~~g~i 79 (369)
...|.+||..-.. +-| .+ .||+||-.+.++..|.++
T Consensus 73 ~~~C~~CG~~~e~-----~~~--------~~~~CP~Cgs~~~~i~~G~el 109 (119)
T 2kdx_A 73 ELECKDCSHVFKP-----NAL--------DYGVCEKCHSKNVIITQGNEM 109 (119)
T ss_dssp EEECSSSSCEECS-----CCS--------TTCCCSSSSSCCCEEEESSCC
T ss_pred eEEcCCCCCEEeC-----CCC--------CCCcCccccCCCcEEecCCeE
Confidence 5789999976332 112 36 899999999999888776
No 33
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=59.36 E-value=2.3 Score=32.03 Aligned_cols=29 Identities=24% Similarity=0.543 Sum_probs=21.1
Q ss_pred eeccCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCCc
Q 017546 284 FPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRN 324 (369)
Q Consensus 284 ~~~~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk~ 324 (369)
..-.|..||.....+. + ....|.+||||.
T Consensus 20 v~Y~C~~Cg~~~~l~~--------~----~~iRC~~CG~RI 48 (63)
T 3h0g_L 20 MIYLCADCGARNTIQA--------K----EVIRCRECGHRV 48 (63)
T ss_dssp CCCBCSSSCCBCCCCS--------S----SCCCCSSSCCCC
T ss_pred eEEECCCCCCeeecCC--------C----CceECCCCCcEE
Confidence 3457999998865431 2 457899999985
No 34
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=56.86 E-value=38 Score=31.11 Aligned_cols=39 Identities=18% Similarity=0.427 Sum_probs=24.9
Q ss_pred ccCCCCCCCceEEEEEeecCCcceEEEEEeeCCCCCCCccce
Q 017546 32 SLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEV 73 (369)
Q Consensus 32 s~Cp~Cg~~g~tr~llt~IP~FkeiiImSf~C~~CGyrnnEV 73 (369)
..|+.|+..|..+.....-| | +.-+...|+.|+=+-.-|
T Consensus 55 ~~C~~C~G~G~~~~~~~~g~-~--~~~~~~~C~~C~G~G~~i 93 (248)
T 1nlt_A 55 KKCTSCNGQGIKFVTRQMGP-M--IQRFQTECDVCHGTGDII 93 (248)
T ss_dssp CCCTTSSSSSCEEEEEESSS-E--EEEEECSCTTCSSSSSCC
T ss_pred ccCCCCCCCcEEEEEEecCc-e--EEEEEEcCCCCCCcCEEe
Confidence 56888888886543332223 3 445788999998765433
No 35
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=56.85 E-value=6.5 Score=35.94 Aligned_cols=32 Identities=16% Similarity=0.313 Sum_probs=22.6
Q ss_pred eeeeccCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCC
Q 017546 282 MTFPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYR 323 (369)
Q Consensus 282 ~~~~~~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk 323 (369)
+-....||.||..- .+..++- | .+.|-+||+.
T Consensus 11 ~~~~~~CP~Cg~~d--~~~~~~d---g-----~~~C~~Cg~~ 42 (255)
T 1nui_A 11 FLYHIPCDNCGSSD--GNSLFSD---G-----HTFCYVCEKW 42 (255)
T ss_dssp EEEEECCSSSCCSS--CEEEETT---S-----CEEETTTCCE
T ss_pred eecCCcCCCCCCCC--CceEeCC---C-----CeecccCCCc
Confidence 34578999998752 4555532 3 4899999986
No 36
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=56.75 E-value=2 Score=37.56 Aligned_cols=32 Identities=22% Similarity=0.639 Sum_probs=22.6
Q ss_pred ccCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCCcc
Q 017546 286 STCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNS 325 (369)
Q Consensus 286 ~~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk~~ 325 (369)
+.||.|+.+ +|.+..- +. +....|..||++..
T Consensus 105 VlC~~C~sP-dT~L~k~-----~r--~~~l~C~ACGa~~~ 136 (148)
T 2d74_B 105 VICPVCGSP-DTKIIKR-----DR--FHFLKCEACGAETP 136 (148)
T ss_dssp SSCSSSCCT-TCCCCBS-----SS--SBCCCCSSSCCCCC
T ss_pred EECCCCCCc-CcEEEEe-----CC--EEEEEecCCCCCcc
Confidence 679999998 4555321 22 45579999999864
No 37
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=56.28 E-value=6.7 Score=37.67 Aligned_cols=40 Identities=28% Similarity=0.508 Sum_probs=22.6
Q ss_pred eccCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCCcc
Q 017546 285 PSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNS 325 (369)
Q Consensus 285 ~~~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk~~ 325 (369)
...||.||+.-. ..+...+=--.+=.-.-+.|-+|||+..
T Consensus 268 ~~~C~~C~~~~~-~~~q~Q~rsaDe~~t~f~~C~~Cg~~w~ 307 (309)
T 1pqv_S 268 RFTCGKCKEKKV-SYYQLQTRSADEPLTTFCTCEACGNRWK 307 (309)
T ss_pred cccCCCCCCCee-EEEEeecccCCCCCcEEEEeCCCCCcee
Confidence 457999987622 2222222222233334567999999863
No 38
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=54.04 E-value=8.4 Score=29.78 Aligned_cols=36 Identities=33% Similarity=0.627 Sum_probs=25.3
Q ss_pred eccCCCCCCCceEEEEEeecCCcceEEEEEeeCCCCCCCccceeeCcccCC
Q 017546 31 ESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEIQP 81 (369)
Q Consensus 31 es~Cp~Cg~~g~tr~llt~IP~FkeiiImSf~C~~CGyrnnEVq~~g~i~~ 81 (369)
...||.||+..+.|.- +-| +.|.+||+.. .+|+..|
T Consensus 27 ky~C~fCgk~~vkR~a-~GI----------W~C~~C~~~~----AGGAy~~ 62 (73)
T 1ffk_W 27 KYKCPVCGFPKLKRAS-TSI----------WVCGHCGYKI----AGGAYTP 62 (73)
T ss_pred CccCCCCCCceeEEEE-eEE----------EECCCCCcEE----ECCCccc
Confidence 4679999987555543 344 9999999964 4665554
No 39
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=53.79 E-value=2.7 Score=35.88 Aligned_cols=41 Identities=24% Similarity=0.425 Sum_probs=0.0
Q ss_pred eccCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCCccc
Q 017546 285 PSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSE 326 (369)
Q Consensus 285 ~~~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk~~e 326 (369)
...||.||..-. ..++..+=--.|=.-.-+.|.+|||+..|
T Consensus 92 ~~~CpkCg~~~a-~f~q~Q~RsaDE~mT~fy~C~~C~~~w~e 132 (133)
T 3qt1_I 92 DRECPKCHSREN-VFFQLQIRSADEPMTTFYKCVNCGHRWKE 132 (133)
T ss_dssp ------------------------------------------
T ss_pred cCCCCCCCCceE-EEEEEeeecCCCCCcEEEEcCCCCCEeCc
Confidence 457999987622 22233332223334455779999999865
No 40
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=53.63 E-value=2.7 Score=36.25 Aligned_cols=32 Identities=25% Similarity=0.670 Sum_probs=22.7
Q ss_pred ccCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCCcc
Q 017546 286 STCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNS 325 (369)
Q Consensus 286 ~~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk~~ 325 (369)
+.||.|+.+ +|.+..- +.+ +...|..||++..
T Consensus 103 VlC~~C~sP-dT~l~k~-----~r~--~~l~C~ACGa~~~ 134 (138)
T 1nee_A 103 VICHECNRP-DTRIIRE-----GRI--SLLKCEACGAKAP 134 (138)
T ss_dssp HHHTCCSSC-SSCCEEE-----TTT--TEEECSTTSCCCC
T ss_pred EECCCCCCc-CcEEEEc-----CCe--EEEEccCCCCCcc
Confidence 569999999 5666442 232 3478999999864
No 41
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=53.60 E-value=7.2 Score=32.76 Aligned_cols=40 Identities=23% Similarity=0.433 Sum_probs=27.0
Q ss_pred eeeeeccCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCCccccccCCccCC
Q 017546 281 VMTFPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSELKPGGRIPE 335 (369)
Q Consensus 281 v~~~~~~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk~~eVk~~g~~~~ 335 (369)
.+.-.-.||.||+. .|+-... =-|.|.+|||.. .||+..|
T Consensus 56 ~q~akytCPfCGk~---~vKR~av--------GIW~C~~Cgk~f----AGGAy~~ 95 (116)
T 3cc2_Z 56 EMNEDHACPNCGED---RVDRQGT--------GIWQCSYCDYKF----TGGSYKP 95 (116)
T ss_dssp HHHSCEECSSSCCE---EEEEEET--------TEEEETTTCCEE----ECCSSSS
T ss_pred HhccCCcCCCCCCc---eeEecCc--------eeEECCCCCCEE----ECCCccc
Confidence 34556789999975 3443332 268999999964 4666665
No 42
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=53.01 E-value=5.9 Score=33.26 Aligned_cols=36 Identities=31% Similarity=0.639 Sum_probs=25.3
Q ss_pred eccCCCCCCCceEEEEEeecCCcceEEEEEeeCCCCCCCccceeeCcccCC
Q 017546 31 ESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEIQP 81 (369)
Q Consensus 31 es~Cp~Cg~~g~tr~llt~IP~FkeiiImSf~C~~CGyrnnEVq~~g~i~~ 81 (369)
...||.||+....|.- +- .+.|.+||+.. .+|+..+
T Consensus 60 kytCPfCGk~~vKR~a-vG----------IW~C~~Cgk~f----AGGAy~~ 95 (116)
T 3cc2_Z 60 DHACPNCGEDRVDRQG-TG----------IWQCSYCDYKF----TGGSYKP 95 (116)
T ss_dssp CEECSSSCCEEEEEEE-TT----------EEEETTTCCEE----ECCSSSS
T ss_pred CCcCCCCCCceeEecC-ce----------eEECCCCCCEE----ECCCccc
Confidence 4579999986555544 22 38999999964 4666654
No 43
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=52.36 E-value=6.7 Score=30.34 Aligned_cols=40 Identities=20% Similarity=0.456 Sum_probs=27.2
Q ss_pred eeeeeccCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCCccccccCCccCC
Q 017546 281 VMTFPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSELKPGGRIPE 335 (369)
Q Consensus 281 v~~~~~~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk~~eVk~~g~~~~ 335 (369)
.+.-.-.||.||+.- | +.+-.=-+.|.+||++. .||+..|
T Consensus 23 ~q~~ky~C~fCgk~~---v--------kR~a~GIW~C~~C~~~~----AGGAy~~ 62 (73)
T 1ffk_W 23 KHKKKYKCPVCGFPK---L--------KRASTSIWVCGHCGYKI----AGGAYTP 62 (73)
T ss_pred hcccCccCCCCCCce---e--------EEEEeEEEECCCCCcEE----ECCCccc
Confidence 345577899999762 3 33334459999999974 4666655
No 44
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=51.76 E-value=7.8 Score=30.72 Aligned_cols=36 Identities=33% Similarity=0.721 Sum_probs=25.9
Q ss_pred eccCCCCCCCceEEEEEeecCCcceEEEEEeeCCCCCCCccceeeCcccCC
Q 017546 31 ESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEIQP 81 (369)
Q Consensus 31 es~Cp~Cg~~g~tr~llt~IP~FkeiiImSf~C~~CGyrnnEVq~~g~i~~ 81 (369)
.-.||.||+..+-|. -+-| +.|.+||+.. .+|+..|
T Consensus 35 ky~CpfCGk~~vkR~-a~GI----------W~C~kCg~~~----AGGAy~~ 70 (83)
T 3j21_i 35 KHTCPVCGRKAVKRI-STGI----------WQCQKCGATF----AGGAYLP 70 (83)
T ss_dssp CBCCSSSCSSCEEEE-ETTE----------EEETTTCCEE----ECCSSSS
T ss_pred ccCCCCCCCceeEec-CcCe----------EEcCCCCCEE----eCCcccc
Confidence 456999999865553 3445 9999999964 4666654
No 45
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=49.94 E-value=3.6 Score=36.65 Aligned_cols=40 Identities=25% Similarity=0.483 Sum_probs=21.6
Q ss_pred eccCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCCcc
Q 017546 285 PSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNS 325 (369)
Q Consensus 285 ~~~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk~~ 325 (369)
...||.||+.-.+ .....+=--.|=.-.-+.|-+|||+..
T Consensus 137 ~~~Cp~C~~~~a~-~~q~Q~rsaDE~mt~f~~C~~C~~~w~ 176 (178)
T 3po3_S 137 RFTCGKCKEKKVS-YYQLQTRSAAAPLTTFCTCEACGNRWK 176 (178)
T ss_dssp SSCCSSSCCSCEE-CCCCCCSCTTSCCCCCEEETTTCCEEC
T ss_pred CcCCCCCCCCceE-EEEeecccCCCCCcEEEEcCCCCCeec
Confidence 4579999876222 111111111222334567999999864
No 46
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=49.85 E-value=18 Score=28.50 Aligned_cols=41 Identities=17% Similarity=0.263 Sum_probs=15.9
Q ss_pred cCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCCcccc
Q 017546 287 TCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSEL 327 (369)
Q Consensus 287 ~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk~~eV 327 (369)
.||.|+.++...-..+.=+.=+.-+-.-..|+.||-.--..
T Consensus 4 ~CP~C~~~l~~~~~~~~C~~C~~~~~~~afCPeCgq~Le~l 44 (81)
T 2jrp_A 4 TCPVCHHALERNGDTAHCETCAKDFSLQALCPDCRQPLQVL 44 (81)
T ss_dssp CCSSSCSCCEECSSEEECTTTCCEEEEEEECSSSCSCCCEE
T ss_pred CCCCCCCccccCCCceECccccccCCCcccCcchhhHHHHH
Confidence 45555544433222222222233333333555555444333
No 47
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=49.62 E-value=8.8 Score=30.99 Aligned_cols=35 Identities=29% Similarity=0.575 Sum_probs=25.4
Q ss_pred ccCCCCCCCceEEEEEeecCCcceEEEEEeeCCCCCCCccceeeCcccCC
Q 017546 32 SLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEIQP 81 (369)
Q Consensus 32 s~Cp~Cg~~g~tr~llt~IP~FkeiiImSf~C~~CGyrnnEVq~~g~i~~ 81 (369)
-.||.||+..+-|. -+-| +.|.+||+.. .+|+..|
T Consensus 37 y~CpfCgk~~vkR~-a~GI----------W~C~~Cg~~~----AGGAy~~ 71 (92)
T 3iz5_m 37 YFCEFCGKFAVKRK-AVGI----------WGCKDCGKVK----AGGAYTM 71 (92)
T ss_dssp BCCTTTCSSCBEEE-ETTE----------EECSSSCCEE----ECCSSSS
T ss_pred ccCcccCCCeeEec-Ccce----------EEcCCCCCEE----eCCcccC
Confidence 47999999876553 2445 9999999954 4666654
No 48
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=49.25 E-value=4.8 Score=33.11 Aligned_cols=39 Identities=15% Similarity=0.432 Sum_probs=28.4
Q ss_pred eeeccCccCcccccceeEEEecCCCCeEEEEEe-eCCCCCCCccccccCCccC
Q 017546 283 TFPSTCGACAASCETRMFMTRIPYFQEVIVMAS-TCDACGYRNSELKPGGRIP 334 (369)
Q Consensus 283 ~~~~~Cp~C~~~~~~~m~~~~IP~F~eviims~-~C~~CGyk~~eVk~~g~~~ 334 (369)
.....|..||+..... -| .. .|++||....++.+|....
T Consensus 71 p~~~~C~~CG~~~e~~-----~~--------~~~~CP~Cgs~~~~i~~G~el~ 110 (119)
T 2kdx_A 71 KVELECKDCSHVFKPN-----AL--------DYGVCEKCHSKNVIITQGNEMR 110 (119)
T ss_dssp CCEEECSSSSCEECSC-----CS--------TTCCCSSSSSCCCEEEESSCCE
T ss_pred cceEEcCCCCCEEeCC-----CC--------CCCcCccccCCCcEEecCCeEE
Confidence 3467899999875431 12 35 7999999999988877653
No 49
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=47.80 E-value=4.2 Score=34.72 Aligned_cols=42 Identities=19% Similarity=0.400 Sum_probs=0.0
Q ss_pred EEeccCCCCCCCceE-EEEEeecCCcceEEEEEeeCCCCCCCccc
Q 017546 29 QVESLCMRCGENGVT-RFLLTLIPHFRKVLLSAFECPHCGERNNE 72 (369)
Q Consensus 29 eies~Cp~Cg~~g~t-r~llt~IP~FkeiiImSf~C~~CGyrnnE 72 (369)
.....||.||.+..+ ..+.++- -.|=.-.-|.|..||++-.|
T Consensus 90 ~t~~~CpkCg~~~a~f~q~Q~Rs--aDE~mT~fy~C~~C~~~w~e 132 (133)
T 3qt1_I 90 RSDRECPKCHSRENVFFQLQIRS--ADEPMTTFYKCVNCGHRWKE 132 (133)
T ss_dssp ---------------------------------------------
T ss_pred cccCCCCCCCCceEEEEEEeeec--CCCCCcEEEEcCCCCCEeCc
Confidence 346789999976432 2222221 23334445889999998654
No 50
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=47.22 E-value=10 Score=30.54 Aligned_cols=36 Identities=25% Similarity=0.445 Sum_probs=25.6
Q ss_pred eccCCCCCCCceEEEEEeecCCcceEEEEEeeCCCCCCCccceeeCcccCC
Q 017546 31 ESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEIQP 81 (369)
Q Consensus 31 es~Cp~Cg~~g~tr~llt~IP~FkeiiImSf~C~~CGyrnnEVq~~g~i~~ 81 (369)
.-.||.||+..+-|.- +-| +.|.+||+.. .+|+..|
T Consensus 36 ky~CpfCgk~~vkR~a-~GI----------W~C~~C~~~~----AGGAy~~ 71 (92)
T 3izc_m 36 RYDCSFCGKKTVKRGA-AGI----------WTCSCCKKTV----AGGAYTV 71 (92)
T ss_dssp CCCCSSSCSSCCEEEE-TTE----------EECTTTCCEE----ECCSSSS
T ss_pred CCcCCCCCCceeeecc-cce----------EEcCCCCCEE----eCCcccC
Confidence 3569999988765532 444 9999999954 4666654
No 51
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=44.42 E-value=18 Score=29.54 Aligned_cols=50 Identities=22% Similarity=0.315 Sum_probs=34.3
Q ss_pred eeccCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCCccccccCCcc
Q 017546 284 FPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSELKPGGRI 333 (369)
Q Consensus 284 ~~~~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk~~eVk~~g~~ 333 (369)
+...||.|+.++...--.+-=+.=..-+.+-..|+.||-.--..|.=|+.
T Consensus 31 M~~~CP~Cq~eL~~~g~~~hC~~C~~~f~~~a~CPdC~q~LevLkACGAv 80 (101)
T 2jne_A 31 MELHCPQCQHVLDQDNGHARCRSCGEFIEMKALCPDCHQPLQVLKACGAV 80 (101)
T ss_dssp CCCBCSSSCSBEEEETTEEEETTTCCEEEEEEECTTTCSBCEEEEETTEE
T ss_pred ccccCccCCCcceecCCEEECccccchhhccccCcchhhHHHHHHHhcCc
Confidence 45889999998765432333344466677788899998877777666644
No 52
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.59 E-value=29 Score=27.45 Aligned_cols=33 Identities=24% Similarity=0.583 Sum_probs=22.1
Q ss_pred ccCCCCCCCceEEEEEeecCCcceEEEEEeeCCCCCCCcc
Q 017546 32 SLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNN 71 (369)
Q Consensus 32 s~Cp~Cg~~g~tr~llt~IP~FkeiiImSf~C~~CGyrnn 71 (369)
..|+.|+..|..+... .| +.+...|+.|+=+-.
T Consensus 46 ~~C~~C~G~G~~~~~~----G~---~~~~~~C~~C~G~G~ 78 (104)
T 2ctt_A 46 QHCHYCGGSGMETINT----GP---FVMRSTCRRCGGRGS 78 (104)
T ss_dssp EECSSSSSSCEEEEEE----TT---EEEEEECSSSSSSSE
T ss_pred ccCCCCCCCEEEEEEe----CC---EEEEEECCcCCCcce
Confidence 4699998888654432 22 347788999986543
No 53
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=41.15 E-value=32 Score=31.69 Aligned_cols=34 Identities=15% Similarity=0.396 Sum_probs=20.5
Q ss_pred ccCccCcccccceeEEEecCCCCeEEEEEeeCCCCCC
Q 017546 286 STCGACAASCETRMFMTRIPYFQEVIVMASTCDACGY 322 (369)
Q Consensus 286 ~~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGy 322 (369)
..||.|+..+..... ..+..| +.-+...|+.|+=
T Consensus 55 ~~C~~C~G~G~~~~~-~~~g~~--~~~~~~~C~~C~G 88 (248)
T 1nlt_A 55 KKCTSCNGQGIKFVT-RQMGPM--IQRFQTECDVCHG 88 (248)
T ss_dssp CCCTTSSSSSCEEEE-EESSSE--EEEEECSCTTCSS
T ss_pred ccCCCCCCCcEEEEE-EecCce--EEEEEEcCCCCCC
Confidence 578888777654332 233222 4457788888864
No 54
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.02 E-value=13 Score=32.61 Aligned_cols=33 Identities=27% Similarity=0.506 Sum_probs=23.0
Q ss_pred ccCCCCCCCceEEEEEeecCCcceEEEEEeeCCCCCCCc
Q 017546 32 SLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERN 70 (369)
Q Consensus 32 s~Cp~Cg~~g~tr~llt~IP~FkeiiImSf~C~~CGyrn 70 (369)
.+|+.|+.+ .|.|... ++-=+....|..||.+.
T Consensus 104 VlC~~C~sP-dT~L~~~-----~~~r~~~l~C~ACGa~~ 136 (157)
T 2e9h_A 104 VLCPECENP-ETDLHVN-----PKKQTIGNSCKACGYRG 136 (157)
T ss_dssp TSCTTTCCS-CCEEEEE-----TTTTEEEEECSSSCCEE
T ss_pred EECCCCCCC-ccEEEEe-----cCCCEEEEEccCCCCCC
Confidence 789999977 5665542 12224558999999975
No 55
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=40.38 E-value=1.5e+02 Score=25.78 Aligned_cols=91 Identities=13% Similarity=0.166 Sum_probs=54.0
Q ss_pred EEeccCCCCCCCceE---EEEEeecCCcceEEEEEeeCCCCCCCccc-eeeCcccC-----Ccc-eEEEEEeeCCC----
Q 017546 29 QVESLCMRCGENGVT---RFLLTLIPHFRKVLLSAFECPHCGERNNE-VQFAGEIQ-----PRG-CNYSLKVPSSD---- 94 (369)
Q Consensus 29 eies~Cp~Cg~~g~t---r~llt~IP~FkeiiImSf~C~~CGyrnnE-Vq~~g~i~-----~kG-~r~tL~V~~~~---- 94 (369)
.+...|+.|+..|.. +.+.++||- |.++.. |...|+-. +.| ..+++++..+.
T Consensus 25 ~i~~~c~~c~G~g~~~~~~~l~V~Ip~--------------G~~~G~~ir~~G~G~~~~~g~~GDl~v~i~~~~h~~F~R 90 (181)
T 3agx_A 25 KISHKRLNPDGKSIRNEDKILTIEVKK--------------GWKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKR 90 (181)
T ss_dssp EEEEEEECTTSSCEEEEEEEEEEEECT--------------TCCTTCEEEETTCSCCCSSSCCCCEEEEEEECCCSSCEE
T ss_pred EEecccCCCCCceEEEEeEEEEEEECC--------------CccCCcEEEEeeccccCCCCCcccEEEEEEEecccccee
Confidence 466779999887753 678888874 444332 23332221 112 56677775211
Q ss_pred -cccccceeeeec-----ceEEEeec-----ceeEeCCCCCcceEEehHH
Q 017546 95 -QKMFHRQVVKSE-----SATIKIPE-----LDFEIPPEAQRGSLSTVEG 133 (369)
Q Consensus 95 -~~DLnR~VvKS~-----~ati~IPE-----Ld~eI~p~~~~G~iTTVEG 133 (369)
-.||...+--|- .+++.||- +.+.+|++++.|.+-.+.|
T Consensus 91 ~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~~i~i~~~t~~g~~~rl~g 140 (181)
T 3agx_A 91 DGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVFKDVIRPGMRRKVPG 140 (181)
T ss_dssp ETTEEEEEEEEEHHHHHHCEEEEEECTTSCEEEEEECSCCCTTCEEEETT
T ss_pred eCCcEEEEEEcCHHHHhCCCEEEeECCCCCEEEEECCCccCCCcEEEECC
Confidence 124444443331 36788884 4577788888998888876
No 56
>1u9d_A Hypothetical protein VC0714; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics; 1.70A {Vibrio cholerae o1 biovar eltor str} SCOP: d.80.1.5
Probab=40.30 E-value=88 Score=26.10 Aligned_cols=53 Identities=17% Similarity=0.321 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhhcCCC-ceEEEEeCCCCCcceecCCCCCCCCCeEEEEecCCHHHHHHcC
Q 017546 160 IDQFLLKLRACAKGDS-TFTFILDDPAGNSFIENLYAPSPDPSLNIKFYERTPEQQALLG 218 (369)
Q Consensus 160 i~~~i~kL~~~~~g~~-pFTliidDPsGNS~I~~~~ap~~Dp~~~~~~y~Rt~eqn~~LG 218 (369)
-..+++.|.++.+... -|||....- .||-.- +.=|..++..+.||.||...|-
T Consensus 33 S~~Lid~La~i~~~~~e~fTle~i~s---~~i~~G---~~MP~VeV~~fgRt~EqK~~la 86 (122)
T 1u9d_A 33 VPTLLNELSSLLSTARNAFTFELINT---QYFAEG---GVYPMVEVLWFGREQQTQDQIA 86 (122)
T ss_dssp HHHHHHHHHHHHTCCGGGCEEEECCC---CCCCTT---CCCCEEEEEESCCCHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCcccEEEEEeee---EEEecC---CCCCEEEEEEcCCCHHHHHHHH
Confidence 3456889999998875 999988762 233221 4568999999999999998764
No 57
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=39.92 E-value=9.4 Score=31.42 Aligned_cols=35 Identities=26% Similarity=0.429 Sum_probs=24.7
Q ss_pred ccCCCCCCCceEEEEEeecCCcceEEEEEeeCCCCCCCccceeeCcccCC
Q 017546 32 SLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEIQP 81 (369)
Q Consensus 32 s~Cp~Cg~~g~tr~llt~IP~FkeiiImSf~C~~CGyrnnEVq~~g~i~~ 81 (369)
-.||.||+..+-|. -+-| +.|.+||+.. .+|+..|
T Consensus 37 y~CpfCgk~~vKR~-a~GI----------W~C~kCg~~~----AGGAy~~ 71 (103)
T 4a17_Y 37 YGCPFCGKVAVKRA-AVGI----------WKCKPCKKII----AGGAWEL 71 (103)
T ss_dssp EECTTTCCEEEEEE-ETTE----------EEETTTTEEE----ECCSSCS
T ss_pred CCCCCCCCceeeec-Ccce----------EEcCCCCCEE----eCCcccC
Confidence 46999998765553 2444 9999999865 4676654
No 58
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=39.73 E-value=18 Score=32.99 Aligned_cols=31 Identities=19% Similarity=0.194 Sum_probs=21.2
Q ss_pred EEeccCCCCCCCceEEEEEeecCCcceEEEEEeeCCCCCCC
Q 017546 29 QVESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGER 69 (369)
Q Consensus 29 eies~Cp~Cg~~g~tr~llt~IP~FkeiiImSf~C~~CGyr 69 (369)
-....||.||.... +.+++- + ++.|-+||+.
T Consensus 12 ~~~~~CP~Cg~~d~--~~~~~d---g-----~~~C~~Cg~~ 42 (255)
T 1nui_A 12 LYHIPCDNCGSSDG--NSLFSD---G-----HTFCYVCEKW 42 (255)
T ss_dssp EEEECCSSSCCSSC--EEEETT---S-----CEEETTTCCE
T ss_pred ecCCcCCCCCCCCC--ceEeCC---C-----CeecccCCCc
Confidence 34789999997533 443331 2 4899999984
No 59
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=38.26 E-value=10 Score=30.97 Aligned_cols=29 Identities=21% Similarity=0.500 Sum_probs=17.2
Q ss_pred eEEEEEeeCCCCCCCccceeeCcccCCcce
Q 017546 55 KVLLSAFECPHCGERNNEVQFAGEIQPRGC 84 (369)
Q Consensus 55 eiiImSf~C~~CGyrnnEVq~~g~i~~kG~ 84 (369)
.-+.+.|.|..|+.|+.-..+--++ .+|+
T Consensus 8 ~~~~l~FTC~~C~tRs~k~iSk~aY-~~Gv 36 (100)
T 2e2z_A 8 PKMMIAFTCKKCNTRSSHTMSKQAY-EKGT 36 (100)
T ss_dssp CEEEEEEEETTTTEEEEEEEEHHHH-HTSE
T ss_pred CcEEEEEEccCCCCcchhhcCHHHh-hCCE
Confidence 3456667777777777655555444 3553
No 60
>3r8s_0 50S ribosomal protein L32; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Z 1p86_Z 2awb_0 2aw4_0 2i2v_0 2j28_0 2i2t_0* 2qao_0* 2qba_0* 2qbc_0* 2qbe_0 2qbg_0 2qbi_0* 2qbk_0* 2qov_0 2qox_0 2qoz_0* 2qp1_0* 2rdo_0 2vhm_0 ...
Probab=38.04 E-value=11 Score=27.49 Aligned_cols=27 Identities=22% Similarity=0.144 Sum_probs=17.5
Q ss_pred eccCCCCCCCceEEEEEeecCCcceEEEEEeeCCCCCCCccce
Q 017546 31 ESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEV 73 (369)
Q Consensus 31 es~Cp~Cg~~g~tr~llt~IP~FkeiiImSf~C~~CGyrnnEV 73 (369)
-+.||+||+ ...|| ..|++.-|+..+|
T Consensus 27 l~~c~~cGe--------~~l~H--------~vc~~G~Y~gr~V 53 (56)
T 3r8s_0 27 LSVDKTSGE--------KHLRH--------HITADGYYRGRKV 53 (56)
T ss_dssp EEECTTTCC--------EEETT--------BCCTTSEETTEEC
T ss_pred eeECCCCCC--------eeccc--------EECCCCeECCEEe
Confidence 367999986 34577 7898833444444
No 61
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=37.82 E-value=18 Score=32.12 Aligned_cols=34 Identities=24% Similarity=0.477 Sum_probs=23.0
Q ss_pred ccCCCCCCCceEEEEEeecCCcceEEEEEeeCCCCCCCcc
Q 017546 32 SLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNN 71 (369)
Q Consensus 32 s~Cp~Cg~~g~tr~llt~IP~FkeiiImSf~C~~CGyrnn 71 (369)
.+|+.|+.+ .|.|....- +. +....|..||.+..
T Consensus 97 VlC~~C~sP-dT~L~k~~~---~r--~~~l~C~ACGa~~~ 130 (170)
T 2g2k_A 97 VLCPECENP-ETDLHVNPK---KQ--TIGNSCKACGYRGM 130 (170)
T ss_dssp HSCTTTSSS-CEEEEEETT---TT--EEEEEETTTCCCCC
T ss_pred EECCCCCCC-ccEEEEecC---CC--EEEEEccccCCccc
Confidence 789999977 666654210 12 23489999999764
No 62
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=37.32 E-value=9 Score=32.86 Aligned_cols=31 Identities=23% Similarity=0.568 Sum_probs=21.3
Q ss_pred ceeeeeccCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCC
Q 017546 280 EVMTFPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYR 323 (369)
Q Consensus 280 ev~~~~~~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk 323 (369)
++..+.-.|+.||+..... -....|+.||.+
T Consensus 127 ~~~~~~y~C~~Cg~~~~~~-------------~~~~~Cp~CG~~ 157 (165)
T 2lcq_A 127 KVIKWRYVCIGCGRKFSTL-------------PPGGVCPDCGSK 157 (165)
T ss_dssp SCCCCCEEESSSCCEESSC-------------CGGGBCTTTCCB
T ss_pred ccccEEEECCCCCCcccCC-------------CCCCcCCCCCCc
Confidence 5667778899999875321 012379999986
No 63
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=37.28 E-value=8.9 Score=29.60 Aligned_cols=36 Identities=25% Similarity=0.445 Sum_probs=24.8
Q ss_pred eccCCCCCCCceEEEEEeecCCcceEEEEEeeCCCCCCCccceeeCcccCC
Q 017546 31 ESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEIQP 81 (369)
Q Consensus 31 es~Cp~Cg~~g~tr~llt~IP~FkeiiImSf~C~~CGyrnnEVq~~g~i~~ 81 (369)
.-.||.||+..+-|. -+-| +.|.+||+.. .+|+..|
T Consensus 26 ky~C~fCgk~~vkR~-a~GI----------W~C~~C~~~~----AGGAy~~ 61 (72)
T 3jyw_9 26 RYDCSFCGKKTVKRG-AAGI----------WTCSCCKKTV----AGGAYTV 61 (72)
T ss_dssp CBCCSSCCSSCBSBC-SSSC----------BCCSSSCCCC----CCSSSSS
T ss_pred CccCCCCCCceeEec-CCCe----------EECCCCCCEE----eCCcccc
Confidence 356999998865442 2344 8999999876 3665544
No 64
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.80 E-value=27 Score=27.60 Aligned_cols=32 Identities=34% Similarity=0.517 Sum_probs=20.6
Q ss_pred eccCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCC
Q 017546 285 PSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYR 323 (369)
Q Consensus 285 ~~~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk 323 (369)
+..||.|+..+...+.. .| +.+...|+.|+=+
T Consensus 45 ~~~C~~C~G~G~~~~~~----G~---~~~~~~C~~C~G~ 76 (104)
T 2ctt_A 45 VQHCHYCGGSGMETINT----GP---FVMRSTCRRCGGR 76 (104)
T ss_dssp CEECSSSSSSCEEEEEE----TT---EEEEEECSSSSSS
T ss_pred CccCCCCCCCEEEEEEe----CC---EEEEEECCcCCCc
Confidence 34699998777543332 22 3477889999754
No 65
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=35.82 E-value=16 Score=35.15 Aligned_cols=40 Identities=20% Similarity=0.473 Sum_probs=23.8
Q ss_pred eccCccCccccccee-EEEecCC------------CCeEEEEEeeCCCCCCCcc
Q 017546 285 PSTCGACAASCETRM-FMTRIPY------------FQEVIVMASTCDACGYRNS 325 (369)
Q Consensus 285 ~~~Cp~C~~~~~~~m-~~~~IP~------------F~eviims~~C~~CGyk~~ 325 (369)
...||.||.+ .... ..-..|- ....=+....|.+||+...
T Consensus 12 ~~~C~~Cg~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~C~~Cg~v~~ 64 (416)
T 4e2x_A 12 PTACRVCGGG-VQEFLDLGRQPLSDRFRKPDELDDEFTYRLAVGRCDSCEMVQL 64 (416)
T ss_dssp CEECTTTSCE-EEEEEEEEEEECTTCCBCTTSCSCCCEEEEEEEEETTTCCEEE
T ss_pred CCcCCCCCCe-eeeeeECCCCCccccCCChhhcCccceecceEEECCCCCceee
Confidence 3479999988 2222 2222221 2333467788999997654
No 66
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=34.52 E-value=17 Score=28.69 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=23.0
Q ss_pred eccCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCCcc
Q 017546 285 PSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNS 325 (369)
Q Consensus 285 ~~~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk~~ 325 (369)
...||.||+.-.....+. +.--+-...|..||-++.
T Consensus 23 ~F~CPfCnh~~sV~vkid-----k~~~~g~l~C~~Cg~~~~ 58 (85)
T 1wii_A 23 QFTCPFCNHEKSCDVKMD-----RARNTGVISCTVCLEEFQ 58 (85)
T ss_dssp CCCCTTTCCSSCEEEEEE-----TTTTEEEEEESSSCCEEE
T ss_pred eEcCCCCCCCCeEEEEEE-----ccCCEEEEEcccCCCeEE
Confidence 347999998843333322 222367789999997663
No 67
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=33.43 E-value=14 Score=20.26 Aligned_cols=11 Identities=45% Similarity=1.283 Sum_probs=8.6
Q ss_pred eeCCCCCCCcc
Q 017546 61 FECPHCGERNN 71 (369)
Q Consensus 61 f~C~~CGyrnn 71 (369)
|.|+.||...+
T Consensus 3 ~~C~~C~~~f~ 13 (29)
T 2m0e_A 3 HKCPHCDKKFN 13 (29)
T ss_dssp CCCSSCCCCCC
T ss_pred CcCCCCCcccC
Confidence 67999998764
No 68
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=32.97 E-value=14 Score=20.46 Aligned_cols=11 Identities=36% Similarity=1.050 Sum_probs=8.8
Q ss_pred eeCCCCCCCcc
Q 017546 61 FECPHCGERNN 71 (369)
Q Consensus 61 f~C~~CGyrnn 71 (369)
|.|+.||...+
T Consensus 4 ~~C~~C~k~f~ 14 (27)
T 2kvh_A 4 FSCSLCPQRSR 14 (27)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCcChhhC
Confidence 78999998754
No 69
>1zso_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.17A {Plasmodium falciparum} SCOP: b.166.1.1
Probab=32.59 E-value=28 Score=30.61 Aligned_cols=47 Identities=6% Similarity=-0.016 Sum_probs=36.0
Q ss_pred ceeeeeccCccCccccc----ceeEEEecCCCCeEEEEEeeCCCCCCCccc
Q 017546 280 EVMTFPSTCGACAASCE----TRMFMTRIPYFQEVIVMASTCDACGYRNSE 326 (369)
Q Consensus 280 ev~~~~~~Cp~C~~~~~----~~m~~~~IP~F~eviims~~C~~CGyk~~e 326 (369)
-.+.|...|.+|+..-. +.+-.++||.-+-..=+.+.|..|+..++=
T Consensus 32 ~~~~fkvkC~~C~E~~~kv~v~~~e~~ei~gsRG~aNfv~KCk~C~re~Si 82 (164)
T 1zso_A 32 YLWIFNIRDSTSSLTRDNIQFRKTDILEIPNSRGTANFMIKWTEYPKYSTI 82 (164)
T ss_dssp CCEEEEEEETTSSCEEEEEEECTTCBEECTTSSCEESEEECCSSSSCCEEE
T ss_pred cEEEEEEEECCCCcccCCEEEcchheeecCCCCcceeEEEeccccCCcceE
Confidence 56799999999976532 233567888887777899999999977654
No 70
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=31.91 E-value=33 Score=32.76 Aligned_cols=38 Identities=29% Similarity=0.441 Sum_probs=22.4
Q ss_pred eccCCCCCCCceEE-EEEeecCCcceEEEEEeeCCCCCCCc
Q 017546 31 ESLCMRCGENGVTR-FLLTLIPHFRKVLLSAFECPHCGERN 70 (369)
Q Consensus 31 es~Cp~Cg~~g~tr-~llt~IP~FkeiiImSf~C~~CGyrn 70 (369)
...||.||....+- .+.++= --|=.-.-|.|-.||++.
T Consensus 268 ~~~C~~C~~~~~~~~q~Q~rs--aDe~~t~f~~C~~Cg~~w 306 (309)
T 1pqv_S 268 RFTCGKCKEKKVSYYQLQTRS--ADEPLTTFCTCEACGNRW 306 (309)
T ss_pred cccCCCCCCCeeEEEEeeccc--CCCCCcEEEEeCCCCCce
Confidence 45799999764432 222221 123333447899999974
No 71
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=31.41 E-value=15 Score=20.37 Aligned_cols=11 Identities=45% Similarity=1.120 Sum_probs=8.7
Q ss_pred eeCCCCCCCcc
Q 017546 61 FECPHCGERNN 71 (369)
Q Consensus 61 f~C~~CGyrnn 71 (369)
|.|+.||....
T Consensus 3 ~~C~~C~k~f~ 13 (29)
T 1rik_A 3 FACPECPKRFM 13 (29)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCCCchhC
Confidence 78999998654
No 72
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=31.23 E-value=33 Score=23.64 Aligned_cols=29 Identities=31% Similarity=0.674 Sum_probs=17.9
Q ss_pred ccCccCcc-cccceeEEEecCCCCeEEEEEeeCCCCCCCcc
Q 017546 286 STCGACAA-SCETRMFMTRIPYFQEVIVMASTCDACGYRNS 325 (369)
Q Consensus 286 ~~Cp~C~~-~~~~~m~~~~IP~F~eviims~~C~~CGyk~~ 325 (369)
..||.|+. ++ .++ |-=++ .+|..||.-..
T Consensus 6 ~~CP~C~~~~l-----~~d-~~~ge-----lvC~~CG~v~~ 35 (50)
T 1pft_A 6 KVCPACESAEL-----IYD-PERGE-----IVCAKCGYVIE 35 (50)
T ss_dssp CSCTTTSCCCE-----EEE-TTTTE-----EEESSSCCBCC
T ss_pred EeCcCCCCcce-----EEc-CCCCe-----EECcccCCccc
Confidence 36999987 32 122 22233 57999998654
No 73
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=31.20 E-value=24 Score=30.92 Aligned_cols=28 Identities=21% Similarity=0.586 Sum_probs=19.5
Q ss_pred ccCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCCcccc
Q 017546 286 STCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSEL 327 (369)
Q Consensus 286 ~~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk~~eV 327 (369)
-.|++||.--. -+.|- .|+.||......
T Consensus 139 ~~C~~CG~i~~-----~~~p~---------~CP~Cg~~~~~F 166 (170)
T 3pwf_A 139 YICPICGYTAV-----DEAPE---------YCPVCGAPKEKF 166 (170)
T ss_dssp EECTTTCCEEE-----SCCCS---------BCTTTCCBGGGC
T ss_pred eEeCCCCCeeC-----CCCCC---------CCCCCCCCHHHc
Confidence 34999996533 35664 899999865544
No 74
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=37.10 E-value=10 Score=20.84 Aligned_cols=12 Identities=33% Similarity=0.977 Sum_probs=9.4
Q ss_pred eeCCCCCCCccc
Q 017546 61 FECPHCGERNNE 72 (369)
Q Consensus 61 f~C~~CGyrnnE 72 (369)
|.|+.||.....
T Consensus 3 ~~C~~C~k~f~~ 14 (26)
T 2lvu_A 3 YVCERCGKRFVQ 14 (26)
Confidence 789999987653
No 75
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=30.69 E-value=19 Score=26.80 Aligned_cols=9 Identities=33% Similarity=1.036 Sum_probs=4.3
Q ss_pred CCCCCCCcc
Q 017546 317 CDACGYRNS 325 (369)
Q Consensus 317 C~~CGyk~~ 325 (369)
|+.||-.+.
T Consensus 21 CP~CG~~T~ 29 (60)
T 2apo_B 21 CPKCGEKTV 29 (60)
T ss_dssp CSSSCSBCB
T ss_pred CcCCCCcCC
Confidence 555554433
No 76
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=30.68 E-value=12 Score=32.08 Aligned_cols=32 Identities=22% Similarity=0.493 Sum_probs=17.2
Q ss_pred ccCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCCcc
Q 017546 286 STCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNS 325 (369)
Q Consensus 286 ~~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk~~ 325 (369)
+.||.|+.+ +|.+..- +. ++...|..||++..
T Consensus 104 VlC~~C~sP-dT~l~k~-----~r--~~~l~C~ACGa~~~ 135 (139)
T 3cw2_K 104 VECSTCKSL-DTILKKE-----KK--SWYIVCLACGAQTP 135 (139)
T ss_dssp SSCCSSSSS-CCCSCSS-----CS--TTTSSCCC------
T ss_pred eECCCCCCc-CcEEEEe-----CC--eEEEEecCCCCCCc
Confidence 679999998 5555321 12 24478999999753
No 77
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=30.59 E-value=18 Score=19.97 Aligned_cols=11 Identities=27% Similarity=0.634 Sum_probs=8.7
Q ss_pred eeCCCCCCCcc
Q 017546 61 FECPHCGERNN 71 (369)
Q Consensus 61 f~C~~CGyrnn 71 (369)
|.|+.||....
T Consensus 3 ~~C~~C~~~f~ 13 (29)
T 1ard_A 3 FVCEVCTRAFA 13 (29)
T ss_dssp CBCTTTCCBCS
T ss_pred eECCCCCcccC
Confidence 78999998764
No 78
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=30.54 E-value=17 Score=20.30 Aligned_cols=11 Identities=18% Similarity=0.673 Sum_probs=8.7
Q ss_pred eeCCCCCCCcc
Q 017546 61 FECPHCGERNN 71 (369)
Q Consensus 61 f~C~~CGyrnn 71 (369)
|.|+.||...+
T Consensus 3 ~~C~~C~k~f~ 13 (30)
T 1paa_A 3 YACGLCNRAFT 13 (30)
T ss_dssp SBCTTTCCBCS
T ss_pred cCCcccCcccC
Confidence 68999998764
No 79
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=30.31 E-value=15 Score=31.51 Aligned_cols=32 Identities=25% Similarity=0.705 Sum_probs=21.5
Q ss_pred ccCCCCCCCceEEEEEeecCCcceEEEEEeeCCCCCCCcc
Q 017546 32 SLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNN 71 (369)
Q Consensus 32 s~Cp~Cg~~g~tr~llt~IP~FkeiiImSf~C~~CGyrnn 71 (369)
.+|+.|+.+- |.|..-+ . +....|..||.+..
T Consensus 103 VlC~~C~sPd-T~l~k~~-----r--~~~l~C~ACGa~~~ 134 (138)
T 1nee_A 103 VICHECNRPD-TRIIREG-----R--ISLLKCEACGAKAP 134 (138)
T ss_dssp HHHTCCSSCS-SCCEEET-----T--TTEEECSTTSCCCC
T ss_pred EECCCCCCcC-cEEEEcC-----C--eEEEEccCCCCCcc
Confidence 6899999874 4443321 1 23479999999763
No 80
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=30.15 E-value=18 Score=19.75 Aligned_cols=11 Identities=18% Similarity=0.603 Sum_probs=8.5
Q ss_pred eeCCCCCCCcc
Q 017546 61 FECPHCGERNN 71 (369)
Q Consensus 61 f~C~~CGyrnn 71 (369)
|.|+.||....
T Consensus 2 ~~C~~C~k~f~ 12 (27)
T 1znf_A 2 YKCGLCERSFV 12 (27)
T ss_dssp CBCSSSCCBCS
T ss_pred ccCCCCCCcCC
Confidence 67999987754
No 81
>1x3z_A Peptide: N-glycanase; hydrolase-hydrolase inhibitor complex; HET: SUC; 2.80A {Saccharomyces cerevisiae} SCOP: d.3.1.4 PDB: 1x3w_A* 3esw_A*
Probab=29.35 E-value=53 Score=32.11 Aligned_cols=38 Identities=26% Similarity=0.557 Sum_probs=25.9
Q ss_pred ccCCCCCCCce-EEE-EEeecCC-----cceEEEEEeeCCCCCCC
Q 017546 32 SLCMRCGENGV-TRF-LLTLIPH-----FRKVLLSAFECPHCGER 69 (369)
Q Consensus 32 s~Cp~Cg~~g~-tr~-llt~IP~-----FkeiiImSf~C~~CGyr 69 (369)
-.|+.||.++. |+. .-+.-|- ++-..+-.+.|.+||.-
T Consensus 120 p~C~~Cg~~~~~~~~~~g~~~p~~~E~~~ga~~vE~y~C~~C~~~ 164 (335)
T 1x3z_A 120 PDCNHCGQNTSENMTPLGSQGPNGEESKFNCGTVEIYKCNRCGNI 164 (335)
T ss_dssp CCCSSSCSSCCSSEEEEEEECCCSGGGSSSEEEEEEEEETTTCCE
T ss_pred CCccccCCCccccccccCCCCCChhhhccCCceEEEeecCCCCcc
Confidence 56999998763 333 2333333 46788888999999973
No 82
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=28.96 E-value=18 Score=19.97 Aligned_cols=11 Identities=36% Similarity=1.120 Sum_probs=8.6
Q ss_pred eeCCCCCCCcc
Q 017546 61 FECPHCGERNN 71 (369)
Q Consensus 61 f~C~~CGyrnn 71 (369)
|.|+.||+...
T Consensus 4 ~~C~~C~k~f~ 14 (28)
T 2kvf_A 4 YSCSVCGKRFS 14 (28)
T ss_dssp EECSSSCCEES
T ss_pred ccCCCCCcccC
Confidence 78999988654
No 83
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=28.28 E-value=21 Score=21.33 Aligned_cols=11 Identities=36% Similarity=1.144 Sum_probs=8.5
Q ss_pred eeCCCCCCCcc
Q 017546 61 FECPHCGERNN 71 (369)
Q Consensus 61 f~C~~CGyrnn 71 (369)
|.|+.||....
T Consensus 12 ~~C~~C~k~f~ 22 (37)
T 1p7a_A 12 FQCPDCDRSFS 22 (37)
T ss_dssp BCCTTTCCCBS
T ss_pred ccCCCCCcccC
Confidence 67888887764
No 84
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=27.94 E-value=20 Score=19.74 Aligned_cols=11 Identities=27% Similarity=0.954 Sum_probs=8.6
Q ss_pred eeCCCCCCCcc
Q 017546 61 FECPHCGERNN 71 (369)
Q Consensus 61 f~C~~CGyrnn 71 (369)
|.|+.||....
T Consensus 4 ~~C~~C~~~f~ 14 (30)
T 2m0d_A 4 YQCDYCGRSFS 14 (30)
T ss_dssp EECTTTCCEES
T ss_pred ccCCCCCcccC
Confidence 78999988654
No 85
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=27.79 E-value=15 Score=31.83 Aligned_cols=32 Identities=22% Similarity=0.645 Sum_probs=21.7
Q ss_pred ccCCCCCCCceEEEEEeecCCcceEEEEEeeCCCCCCCcc
Q 017546 32 SLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNN 71 (369)
Q Consensus 32 s~Cp~Cg~~g~tr~llt~IP~FkeiiImSf~C~~CGyrnn 71 (369)
.+|+.|+.+- |.|.. +-=+....|..||.+..
T Consensus 105 VlC~~C~sPd-T~L~k-------~~r~~~l~C~ACGa~~~ 136 (148)
T 2d74_B 105 VICPVCGSPD-TKIIK-------RDRFHFLKCEACGAETP 136 (148)
T ss_dssp SSCSSSCCTT-CCCCB-------SSSSBCCCCSSSCCCCC
T ss_pred EECCCCCCcC-cEEEE-------eCCEEEEEecCCCCCcc
Confidence 7899999874 44432 11234489999999763
No 86
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=27.61 E-value=20 Score=19.83 Aligned_cols=11 Identities=27% Similarity=0.848 Sum_probs=8.6
Q ss_pred eeCCCCCCCcc
Q 017546 61 FECPHCGERNN 71 (369)
Q Consensus 61 f~C~~CGyrnn 71 (369)
|.|+.||....
T Consensus 3 ~~C~~C~k~f~ 13 (30)
T 1klr_A 3 YQCQYCEFRSA 13 (30)
T ss_dssp CCCSSSSCCCS
T ss_pred ccCCCCCCccC
Confidence 67999988764
No 87
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=27.34 E-value=71 Score=23.54 Aligned_cols=33 Identities=27% Similarity=0.650 Sum_probs=21.1
Q ss_pred eccCCCCCCCceEEEEEeecCCcceEEEEEeeCCCCCCCc
Q 017546 31 ESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERN 70 (369)
Q Consensus 31 es~Cp~Cg~~g~tr~llt~IP~FkeiiImSf~C~~CGyrn 70 (369)
...|+.|+..|...... .| +.+...|+.|+=+-
T Consensus 28 ~~~C~~C~G~G~~~~~~----g~---~~~~~~C~~C~G~G 60 (79)
T 1exk_A 28 PQTCPTCHGSGQVQMRQ----GF---FAVQQTCPHCQGRG 60 (79)
T ss_dssp CEECTTTTTSSEEEEEE----TT---EEEEEECTTTTTSS
T ss_pred CCCCCCCcCeEEEEEEc----CC---CEEeeECcCCCCcc
Confidence 35799998888644322 22 23667899997544
No 88
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=27.04 E-value=20 Score=20.89 Aligned_cols=11 Identities=18% Similarity=0.570 Sum_probs=8.8
Q ss_pred eeCCCCCCCcc
Q 017546 61 FECPHCGERNN 71 (369)
Q Consensus 61 f~C~~CGyrnn 71 (369)
|.|+.||....
T Consensus 8 ~~C~~C~k~f~ 18 (35)
T 2elx_A 8 YVCALCLKKFV 18 (35)
T ss_dssp EECSSSCCEES
T ss_pred eECCCCcchhC
Confidence 78999998754
No 89
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=26.67 E-value=25 Score=31.56 Aligned_cols=28 Identities=14% Similarity=0.222 Sum_probs=19.6
Q ss_pred eccCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCCccc
Q 017546 285 PSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSE 326 (369)
Q Consensus 285 ~~~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk~~e 326 (369)
.-.|++||.-..- .-| +.|+.||..-..
T Consensus 171 ~~~C~~CG~i~~g-----~~p---------~~CP~C~~~k~~ 198 (202)
T 1yuz_A 171 FHLCPICGYIHKG-----EDF---------EKCPICFRPKDT 198 (202)
T ss_dssp EEECSSSCCEEES-----SCC---------SBCTTTCCBGGG
T ss_pred EEEECCCCCEEcC-----cCC---------CCCCCCCCChHH
Confidence 3479999976321 344 899999986543
No 90
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=26.46 E-value=22 Score=19.49 Aligned_cols=11 Identities=27% Similarity=0.981 Sum_probs=8.3
Q ss_pred eeCCCCCCCcc
Q 017546 61 FECPHCGERNN 71 (369)
Q Consensus 61 f~C~~CGyrnn 71 (369)
|.|+.||....
T Consensus 3 ~~C~~C~k~f~ 13 (29)
T 2m0f_A 3 LKCRECGKQFT 13 (29)
T ss_dssp EECTTTSCEES
T ss_pred ccCCCCCCccC
Confidence 78999987654
No 91
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=26.37 E-value=28 Score=29.78 Aligned_cols=32 Identities=28% Similarity=0.750 Sum_probs=19.2
Q ss_pred ccCCCCCCCceEEEEEeecCCcceEEEEEeeCCCCCCCc
Q 017546 32 SLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERN 70 (369)
Q Consensus 32 s~Cp~Cg~~g~tr~llt~IP~FkeiiImSf~C~~CGyrn 70 (369)
.-||.||.....++ |-=+ ....+.|++||+..
T Consensus 4 ~~C~~CG~~~~~~~-----~~G~--~~~~~~~~~~~~~~ 35 (189)
T 3cng_A 4 KFCSQCGGEVILRI-----PEGD--TLPRYICPKCHTIH 35 (189)
T ss_dssp CBCTTTCCBCEEEC-----CTTC--SSCEEEETTTTEEE
T ss_pred ccCchhCCcccccc-----ccCC--CCcceECCCCCCcc
Confidence 36999998765433 3211 11236699999543
No 92
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=26.20 E-value=16 Score=29.12 Aligned_cols=12 Identities=17% Similarity=0.553 Sum_probs=9.0
Q ss_pred eccCccCccccc
Q 017546 285 PSTCGACAASCE 296 (369)
Q Consensus 285 ~~~Cp~C~~~~~ 296 (369)
...||+||.+..
T Consensus 47 g~~CPvCgs~l~ 58 (112)
T 1l8d_A 47 KGKCPVCGRELT 58 (112)
T ss_dssp SEECTTTCCEEC
T ss_pred CCCCCCCCCcCC
Confidence 346999998754
No 93
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=26.17 E-value=25 Score=28.64 Aligned_cols=35 Identities=26% Similarity=0.548 Sum_probs=23.6
Q ss_pred eeeccCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCCccccccCC
Q 017546 283 TFPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSELKPGG 331 (369)
Q Consensus 283 ~~~~~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk~~eVk~~g 331 (369)
.....||-||.... |.. -..|..|||...-.....
T Consensus 14 KtH~lCrRCG~~sf---------H~q-----K~~CgkCGYpa~k~R~yn 48 (97)
T 2zkr_2 14 KTHTLCRRCGSKAY---------HLQ-----KSTCGKCGYPAKRKRKYN 48 (97)
T ss_dssp CCEECCTTTCSSCE---------ETT-----SCCBTTTCTTTSSCCCCS
T ss_pred CCCCcCCCCCCccC---------cCc-----cccCcccCCchHhccCcc
Confidence 34567999998753 222 238999999776655554
No 94
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=26.15 E-value=39 Score=31.59 Aligned_cols=28 Identities=25% Similarity=0.631 Sum_probs=18.1
Q ss_pred ccCCCCCCCceEEEEEeecCCcceEEEEEeeCCCCCC
Q 017546 32 SLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGE 68 (369)
Q Consensus 32 s~Cp~Cg~~g~tr~llt~IP~FkeiiImSf~C~~CGy 68 (369)
..|+.||..-. +..+- + =++|.||+|--
T Consensus 243 ~pC~~CG~~I~-~~~~~-----g---R~t~~CP~CQ~ 270 (271)
T 2xzf_A 243 EKCSRCGAEIQ-KIKVA-----G---RGTHFCPVCQQ 270 (271)
T ss_dssp SBCTTTCCBCE-EEEET-----T---EEEEECTTTSC
T ss_pred CCCCCCCCEee-EEEEC-----C---CceEECCCCCC
Confidence 56999997632 21111 1 57899999964
No 95
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=26.05 E-value=17 Score=34.23 Aligned_cols=38 Identities=32% Similarity=0.703 Sum_probs=22.3
Q ss_pred eccCCCCCCCceEEEEEeecCCcceEE-EEEeeCCCCCCCccceeeCc
Q 017546 31 ESLCMRCGENGVTRFLLTLIPHFRKVL-LSAFECPHCGERNNEVQFAG 77 (369)
Q Consensus 31 es~Cp~Cg~~g~tr~llt~IP~Fkeii-ImSf~C~~CGyrnnEVq~~g 77 (369)
.+.||+||..-..+ |..-- +--|.|++|+-. -|.++-.
T Consensus 34 n~yCPnCG~~~l~~--------f~nN~PVaDF~C~~C~Ee-yELKSk~ 72 (257)
T 4esj_A 34 QSYCPNCGNNPLNH--------FENNRPVADFYCNHCSEE-FELKSKK 72 (257)
T ss_dssp HCCCTTTCCSSCEE--------C----CCCEEECTTTCCE-EEEEEEE
T ss_pred CCcCCCCCChhhhh--------ccCCCcccccccCCcchh-heecccc
Confidence 47899999753222 11111 234999999874 3666643
No 96
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=25.74 E-value=40 Score=32.22 Aligned_cols=39 Identities=26% Similarity=0.362 Sum_probs=23.4
Q ss_pred ccCCCCCCCceEEE-EEeecCC------------cceEEEEEeeCCCCCCCcc
Q 017546 32 SLCMRCGENGVTRF-LLTLIPH------------FRKVLLSAFECPHCGERNN 71 (369)
Q Consensus 32 s~Cp~Cg~~g~tr~-llt~IP~------------FkeiiImSf~C~~CGyrnn 71 (369)
..||.||.. .... -+...|- ..-.=+..+.|++||+...
T Consensus 13 ~~C~~Cg~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~C~~Cg~v~~ 64 (416)
T 4e2x_A 13 TACRVCGGG-VQEFLDLGRQPLSDRFRKPDELDDEFTYRLAVGRCDSCEMVQL 64 (416)
T ss_dssp EECTTTSCE-EEEEEEEEEEECTTCCBCTTSCSCCCEEEEEEEEETTTCCEEE
T ss_pred CcCCCCCCe-eeeeeECCCCCccccCCChhhcCccceecceEEECCCCCceee
Confidence 459999988 4332 2322221 1223466788999998654
No 97
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=25.67 E-value=18 Score=27.40 Aligned_cols=28 Identities=11% Similarity=0.176 Sum_probs=17.2
Q ss_pred ccCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCCc
Q 017546 286 STCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRN 324 (369)
Q Consensus 286 ~~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk~ 324 (369)
..||.|+.++..... +. ...|..||..+
T Consensus 9 L~CP~ck~~L~~~~~-------~~----~LiC~~cg~~Y 36 (68)
T 2hf1_A 9 LVCPLCKGPLVFDKS-------KD----ELICKGDRLAF 36 (68)
T ss_dssp CBCTTTCCBCEEETT-------TT----EEEETTTTEEE
T ss_pred eECCCCCCcCeEeCC-------CC----EEEcCCCCcEe
Confidence 369999987653210 12 23598998554
No 98
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=25.59 E-value=9.4 Score=28.91 Aligned_cols=27 Identities=7% Similarity=-0.039 Sum_probs=16.9
Q ss_pred cCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCCc
Q 017546 287 TCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRN 324 (369)
Q Consensus 287 ~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk~ 324 (369)
.||.|+.++..... + -...|..||..+
T Consensus 10 ~CP~ck~~L~~~~~-------~----~~LiC~~cg~~Y 36 (68)
T 2jr6_A 10 VCPVTKGRLEYHQD-------K----QELWSRQAKLAY 36 (68)
T ss_dssp BCSSSCCBCEEETT-------T----TEEEETTTTEEE
T ss_pred ECCCCCCcCeEeCC-------C----CEEEcCCCCcEe
Confidence 69999987653210 1 123599998554
No 99
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=24.92 E-value=22 Score=30.55 Aligned_cols=34 Identities=15% Similarity=0.359 Sum_probs=23.0
Q ss_pred ceeeeeccCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCCcc
Q 017546 280 EVMTFPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNS 325 (369)
Q Consensus 280 ev~~~~~~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk~~ 325 (369)
..|.-.-.||.|+..-.+.. +.. ++|+.|||-.+
T Consensus 22 ~~M~~lP~CP~C~seytYeD--------g~l----~vCPeC~hEW~ 55 (138)
T 2akl_A 22 HMVSTLPPCPQCNSEYTYED--------GAL----LVCPECAHEWS 55 (138)
T ss_dssp -CCCCSCCCTTTCCCCCEEC--------SSS----EEETTTTEEEC
T ss_pred cccccCCCCCCCCCcceEec--------CCe----EECCccccccC
Confidence 56655678999988743222 222 68999999886
No 100
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=24.82 E-value=24 Score=20.91 Aligned_cols=12 Identities=42% Similarity=1.038 Sum_probs=9.0
Q ss_pred eeCCCCCCCccc
Q 017546 61 FECPHCGERNNE 72 (369)
Q Consensus 61 f~C~~CGyrnnE 72 (369)
|.|+.||...+.
T Consensus 3 ~~C~~C~k~F~~ 14 (33)
T 1rim_A 3 FACPECPKRFMR 14 (33)
T ss_dssp CCCSSSCCCCSS
T ss_pred ccCCCCCchhCC
Confidence 678999887653
No 101
>2dvk_A UPF0130 protein APE0816; hypothetical protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=24.71 E-value=1.6e+02 Score=26.35 Aligned_cols=75 Identities=11% Similarity=0.164 Sum_probs=42.0
Q ss_pred CCCCCccceeeCcccCCcceEEEEEeeCCCcccccceeeeecceEEEeecceeEeCCCCCcceEEehHHHHHHHHHHHHH
Q 017546 65 HCGERNNEVQFAGEIQPRGCNYSLKVPSSDQKMFHRQVVKSESATIKIPELDFEIPPEAQRGSLSTVEGILVRAADELEA 144 (369)
Q Consensus 65 ~CGyrnnEVq~~g~i~~kG~r~tL~V~~~~~~DLnR~VvKS~~ati~IPELd~eI~p~~~~G~iTTVEGlL~~i~~~L~~ 144 (369)
+||||++-|++.+. +| |+.+-|. +. +.+++|-+. .|.+-==|--|..+++....
T Consensus 112 ~~GFr~SGi~s~~~---~g-r~iVaIr--s~-------------------~~levPl~~-~g~~lV~~eyl~~Lv~~aN~ 165 (188)
T 2dvk_A 112 RNGFKHSGVISIAE---DS-RLVIEIM--SS-------------------QSMSVPLVM-EGARIVGDDALDMLIEKANT 165 (188)
T ss_dssp HTTCCEEEEEEECT---TS-CEEEEEE--CS-------------------CEEEEEEEE-TTEECCCHHHHHHHHHHHHH
T ss_pred HcCcccccceeecC---CC-cEEEEEe--cC-------------------CcEEEEEee-CCeEecCHHHHHHHHHHHHH
Confidence 39999999987765 33 5667666 32 334444322 33322223344444433322
Q ss_pred hhHhhhcCCHHHHHHHHHHHHHHHHhhc
Q 017546 145 LQEERKKLDPQTAEAIDQFLLKLRACAK 172 (369)
Q Consensus 145 ~~~~r~~~~~e~~~ki~~~i~kL~~~~~ 172 (369)
.. .+.+++++.|-++|+++.+
T Consensus 166 kl-------~~nk~rl~r~~~~l~~~~~ 186 (188)
T 2dvk_A 166 IL-------VESRIGLDTFSREVEELVE 186 (188)
T ss_dssp HH-------HHHHHHHHHHHHHHHHCTT
T ss_pred HH-------HHHHHHHHHHHHHHHHHHh
Confidence 21 2356788889888887654
No 102
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=24.64 E-value=17 Score=20.31 Aligned_cols=11 Identities=27% Similarity=0.893 Sum_probs=8.3
Q ss_pred eeCCCCCCCcc
Q 017546 61 FECPHCGERNN 71 (369)
Q Consensus 61 f~C~~CGyrnn 71 (369)
|.|+.||...+
T Consensus 4 ~~C~~C~k~f~ 14 (27)
T 2kvg_A 4 YRCPLCRAGCP 14 (27)
T ss_dssp EEETTTTEEES
T ss_pred cCCCCCCcccC
Confidence 68999987654
No 103
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=24.50 E-value=40 Score=30.98 Aligned_cols=80 Identities=20% Similarity=0.250 Sum_probs=43.2
Q ss_pred EeccCCCCCCCceEE----EEEeecCC-----------------cceEEEEE---eeCCCCCCCccceeeCcccCCcceE
Q 017546 30 VESLCMRCGENGVTR----FLLTLIPH-----------------FRKVLLSA---FECPHCGERNNEVQFAGEIQPRGCN 85 (369)
Q Consensus 30 ies~Cp~Cg~~g~tr----~llt~IP~-----------------FkeiiImS---f~C~~CGyrnnEVq~~g~i~~kG~r 85 (369)
-...|..|+....+. .+...||- +++-.+.. +.|+.||.+..-.+... +..-...
T Consensus 172 ~~~~C~~C~~~s~~~e~f~~lsl~i~~~~~~~~~~sl~~~L~~~~~~e~l~~~n~~~C~~C~~~~~a~k~~~-i~~lP~v 250 (355)
T 3i3t_A 172 SCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTKKLT-VQRFPRI 250 (355)
T ss_dssp EEEEETTTCCEEEEEEEESSEEECCCC-------CBHHHHHHHHHCCEEECGGGCCCCSSSCCCCCEEEEEE-EEECCSE
T ss_pred eeEEeCCCCCCceeeccceeecccCCccccccCccCHHHHHHHhCCccccCCCCCeeCCCCCCccceEEEEE-cccCChh
Confidence 346799999865433 24455553 33434443 89999998765554321 1112235
Q ss_pred EEEEeeCCCcccccceeeeecceEEEee
Q 017546 86 YSLKVPSSDQKMFHRQVVKSESATIKIP 113 (369)
Q Consensus 86 ~tL~V~~~~~~DLnR~VvKS~~ati~IP 113 (369)
+.|++. +=+.++...+-....|.+|
T Consensus 251 L~i~lk---RF~~~~~~~~K~~~~v~fp 275 (355)
T 3i3t_A 251 LVLHLN---RFSASRGSIKKSSVGVDFP 275 (355)
T ss_dssp EEEEEC---CEECCSSCCEECCCCCBCC
T ss_pred eEEEhh---heecCCCCceECCcceeCC
Confidence 666664 2233333333344556677
No 104
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=24.40 E-value=18 Score=27.43 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=17.0
Q ss_pred cCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCCc
Q 017546 287 TCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRN 324 (369)
Q Consensus 287 ~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk~ 324 (369)
.||.|+.++..... +. ...|..||..+
T Consensus 10 ~CP~ck~~L~~~~~-------~~----~LiC~~cg~~Y 36 (70)
T 2js4_A 10 VCPVCKGRLEFQRA-------QA----ELVCNADRLAF 36 (70)
T ss_dssp BCTTTCCBEEEETT-------TT----EEEETTTTEEE
T ss_pred ECCCCCCcCEEeCC-------CC----EEEcCCCCcee
Confidence 69999987653210 11 23699998654
No 105
>1x3z_A Peptide: N-glycanase; hydrolase-hydrolase inhibitor complex; HET: SUC; 2.80A {Saccharomyces cerevisiae} SCOP: d.3.1.4 PDB: 1x3w_A* 3esw_A*
Probab=23.99 E-value=78 Score=30.93 Aligned_cols=40 Identities=20% Similarity=0.436 Sum_probs=27.6
Q ss_pred eccCccCccccc-cee-EEEecCC-----CCeEEEEEeeCCCCCCCc
Q 017546 285 PSTCGACAASCE-TRM-FMTRIPY-----FQEVIVMASTCDACGYRN 324 (369)
Q Consensus 285 ~~~Cp~C~~~~~-~~m-~~~~IP~-----F~eviims~~C~~CGyk~ 324 (369)
.-.|+.||.++. +.. .-+.-|- +|-..+-.+.|.+||.-+
T Consensus 119 ~p~C~~Cg~~~~~~~~~~g~~~p~~~E~~~ga~~vE~y~C~~C~~~~ 165 (335)
T 1x3z_A 119 KPDCNHCGQNTSENMTPLGSQGPNGEESKFNCGTVEIYKCNRCGNIT 165 (335)
T ss_dssp SCCCSSSCSSCCSSEEEEEEECCCSGGGSSSEEEEEEEEETTTCCEE
T ss_pred CCCccccCCCccccccccCCCCCChhhhccCCceEEEeecCCCCccc
Confidence 357999998753 333 2333333 478889999999999743
No 106
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.91 E-value=25 Score=20.73 Aligned_cols=11 Identities=27% Similarity=1.084 Sum_probs=8.5
Q ss_pred eeCCCCCCCcc
Q 017546 61 FECPHCGERNN 71 (369)
Q Consensus 61 f~C~~CGyrnn 71 (369)
|.|+.||+..+
T Consensus 10 ~~C~~C~k~f~ 20 (36)
T 2elt_A 10 YKCPQCSYASA 20 (36)
T ss_dssp EECSSSSCEES
T ss_pred CCCCCCCcccC
Confidence 78888987654
No 107
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=23.78 E-value=43 Score=32.20 Aligned_cols=10 Identities=30% Similarity=0.740 Sum_probs=5.0
Q ss_pred eccCccCccc
Q 017546 285 PSTCGACAAS 294 (369)
Q Consensus 285 ~~~Cp~C~~~ 294 (369)
...||.||..
T Consensus 222 R~~C~~Cg~~ 231 (309)
T 2fiy_A 222 RIKCSHCEES 231 (309)
T ss_dssp TTSCSSSCCC
T ss_pred CcCCcCCCCC
Confidence 3455555554
No 108
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=23.67 E-value=18 Score=21.27 Aligned_cols=12 Identities=42% Similarity=1.005 Sum_probs=9.1
Q ss_pred eeCCCCCCCccc
Q 017546 61 FECPHCGERNNE 72 (369)
Q Consensus 61 f~C~~CGyrnnE 72 (369)
|.|+.||...+.
T Consensus 3 ~~C~~C~k~f~~ 14 (32)
T 2kfq_A 3 FACPACPKRFMR 14 (32)
T ss_dssp SSSSSSCTTHHH
T ss_pred CCCCCCCcccCC
Confidence 679999987653
No 109
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=23.57 E-value=28 Score=25.90 Aligned_cols=14 Identities=29% Similarity=0.631 Sum_probs=6.7
Q ss_pred eeeeeccCccCccc
Q 017546 281 VMTFPSTCGACAAS 294 (369)
Q Consensus 281 v~~~~~~Cp~C~~~ 294 (369)
+|++...||.||.+
T Consensus 13 ~YTLk~~CP~CG~~ 26 (60)
T 2aus_D 13 RYTLKETCPVCGEK 26 (60)
T ss_dssp CEESSSBCTTTCSB
T ss_pred CEEccccCcCCCCc
Confidence 44444445555444
No 110
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.40 E-value=26 Score=20.95 Aligned_cols=12 Identities=33% Similarity=0.631 Sum_probs=9.1
Q ss_pred EeeCCCCCCCcc
Q 017546 60 AFECPHCGERNN 71 (369)
Q Consensus 60 Sf~C~~CGyrnn 71 (369)
.|.|+.||+...
T Consensus 9 ~~~C~~C~k~f~ 20 (37)
T 2elp_A 9 AMKCPYCDFYFM 20 (37)
T ss_dssp CEECSSSSCEEC
T ss_pred CeECCCCChhhc
Confidence 378999988654
No 111
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.21 E-value=27 Score=21.11 Aligned_cols=12 Identities=17% Similarity=0.545 Sum_probs=9.5
Q ss_pred EeeCCCCCCCcc
Q 017546 60 AFECPHCGERNN 71 (369)
Q Consensus 60 Sf~C~~CGyrnn 71 (369)
.|.|+.||+...
T Consensus 9 ~~~C~~C~k~f~ 20 (37)
T 2elm_A 9 LYYCSQCHYSSI 20 (37)
T ss_dssp EEECSSSSCEEE
T ss_pred CeECCCCCcccC
Confidence 488999998764
No 112
>2jox_A Churchill protein; zinc, transcription; NMR {Homo sapiens}
Probab=23.17 E-value=46 Score=27.33 Aligned_cols=47 Identities=15% Similarity=0.310 Sum_probs=29.2
Q ss_pred CCCCCCceEEeccCCCCCCCceEEEEEeecCCcceEEEEEeeCCCCCCC
Q 017546 21 DDSDAPLYQVESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGER 69 (369)
Q Consensus 21 ~~~~~~v~eies~Cp~Cg~~g~tr~llt~IP~FkeiiImSf~C~~CGyr 69 (369)
++++.++..++..|+||+.--...-+...| -.+-=..+..|=-||.-
T Consensus 47 eedgeEiity~H~C~nC~HvIA~HeYtF~V--~~~yQeY~M~ClLCG~a 93 (106)
T 2jox_A 47 EEDGEEIVTYDHLCKNCHHVIARHEYTFSI--MDEFQEYTMLCLLCGKA 93 (106)
T ss_dssp EETTEEEEEEEEEETTTCCEEEEEEEEEEE--ETTEEEEEEEETTTEEE
T ss_pred cCCCcEEEEEEEecCCCceEeeeeeEEEEE--ecCeeeeeeeeeeeCCc
Confidence 345667777888888887655445555555 23334456677777753
No 113
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=28.71 E-value=18 Score=20.21 Aligned_cols=13 Identities=23% Similarity=0.772 Sum_probs=10.1
Q ss_pred EeeCCCCCCCccc
Q 017546 60 AFECPHCGERNNE 72 (369)
Q Consensus 60 Sf~C~~CGyrnnE 72 (369)
.|.|+.||.....
T Consensus 3 ~~~C~~C~k~f~~ 15 (30)
T 2lvr_A 3 PYVCIHCQRQFAD 15 (30)
Confidence 4789999987654
No 114
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=22.79 E-value=41 Score=29.71 Aligned_cols=31 Identities=26% Similarity=0.491 Sum_probs=21.3
Q ss_pred eccCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCCccccc
Q 017546 285 PSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSELK 328 (369)
Q Consensus 285 ~~~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk~~eVk 328 (369)
.-.|++||.--. -.+.|- .|+.||..-....
T Consensus 155 ~~~C~~CG~~~~----g~~~p~---------~CP~C~~~k~~f~ 185 (191)
T 1lko_A 155 KWRCRNCGYVHE----GTGAPE---------LCPACAHPKAHFE 185 (191)
T ss_dssp EEEETTTCCEEE----EEECCS---------BCTTTCCBGGGEE
T ss_pred eEEECCCCCEee----CCCCCC---------CCCCCcCCHHHHH
Confidence 457999996532 225665 8999999765543
No 115
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=22.55 E-value=28 Score=20.39 Aligned_cols=11 Identities=27% Similarity=0.534 Sum_probs=8.8
Q ss_pred eeCCCCCCCcc
Q 017546 61 FECPHCGERNN 71 (369)
Q Consensus 61 f~C~~CGyrnn 71 (369)
|.|+.||+...
T Consensus 8 ~~C~~C~k~f~ 18 (35)
T 1srk_A 8 FVCRICLSAFT 18 (35)
T ss_dssp EECSSSCCEES
T ss_pred eeCCCCCcccC
Confidence 78999988764
No 116
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.46 E-value=29 Score=20.52 Aligned_cols=11 Identities=27% Similarity=0.742 Sum_probs=8.6
Q ss_pred eeCCCCCCCcc
Q 017546 61 FECPHCGERNN 71 (369)
Q Consensus 61 f~C~~CGyrnn 71 (369)
|.|+.||....
T Consensus 10 ~~C~~C~k~f~ 20 (36)
T 2els_A 10 FTCEYCNKVFK 20 (36)
T ss_dssp EECTTTCCEES
T ss_pred EECCCCCceeC
Confidence 78889988654
No 117
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.34 E-value=28 Score=20.59 Aligned_cols=11 Identities=18% Similarity=0.833 Sum_probs=8.4
Q ss_pred eeCCCCCCCcc
Q 017546 61 FECPHCGERNN 71 (369)
Q Consensus 61 f~C~~CGyrnn 71 (369)
|.|+.||+...
T Consensus 10 ~~C~~C~k~f~ 20 (36)
T 2elv_A 10 YDCHICERKFK 20 (36)
T ss_dssp EECSSSCCEES
T ss_pred eECCCCCCccC
Confidence 68888987654
No 118
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=22.34 E-value=13 Score=28.29 Aligned_cols=27 Identities=11% Similarity=0.244 Sum_probs=16.9
Q ss_pred cCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCCc
Q 017546 287 TCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRN 324 (369)
Q Consensus 287 ~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk~ 324 (369)
.||.|+.++..... +. ...|..||..+
T Consensus 10 ~CP~ck~~L~~~~~-------~~----~LiC~~cg~~Y 36 (69)
T 2pk7_A 10 ACPICKGPLKLSAD-------KT----ELISKGAGLAY 36 (69)
T ss_dssp CCTTTCCCCEECTT-------SS----EEEETTTTEEE
T ss_pred eCCCCCCcCeEeCC-------CC----EEEcCCCCcEe
Confidence 69999988653210 12 23699998554
No 119
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=22.11 E-value=24 Score=22.19 Aligned_cols=14 Identities=29% Similarity=0.612 Sum_probs=10.9
Q ss_pred EeeCCCCCCCccce
Q 017546 60 AFECPHCGERNNEV 73 (369)
Q Consensus 60 Sf~C~~CGyrnnEV 73 (369)
++.|++|.|.|.-.
T Consensus 6 ~W~C~~CTf~N~~~ 19 (31)
T 1nj3_A 6 MWACQHCTFMNQPG 19 (31)
T ss_dssp CEECSSSCCEECSS
T ss_pred cccCCcccccCCCC
Confidence 47899999988643
No 120
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=22.05 E-value=40 Score=31.51 Aligned_cols=28 Identities=25% Similarity=0.530 Sum_probs=17.9
Q ss_pred ccCCCCCCCceEEEEEeecCCcceEEEEEeeCCCCCC
Q 017546 32 SLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGE 68 (369)
Q Consensus 32 s~Cp~Cg~~g~tr~llt~IP~FkeiiImSf~C~~CGy 68 (369)
..|+.||..-. +..+- + =++|.||+|--
T Consensus 236 ~pC~~CG~~I~-~~~~~-----g---R~t~~CP~CQ~ 263 (266)
T 1ee8_A 236 LPCPACGRPVE-RRVVA-----G---RGTHFCPTCQG 263 (266)
T ss_dssp SBCTTTCCBCE-EEESS-----S---CEEEECTTTTT
T ss_pred CCCCCCCCEee-EEEEC-----C---CceEECCCCCC
Confidence 56999996632 11111 1 47899999964
No 121
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.31 E-value=30 Score=20.48 Aligned_cols=11 Identities=27% Similarity=0.800 Sum_probs=8.6
Q ss_pred eeCCCCCCCcc
Q 017546 61 FECPHCGERNN 71 (369)
Q Consensus 61 f~C~~CGyrnn 71 (369)
|.|+.||+...
T Consensus 10 ~~C~~C~k~f~ 20 (36)
T 2elq_A 10 FKCSLCEYATR 20 (36)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCCCchhC
Confidence 78888888754
No 122
>3l0r_A Cystatin-2, OMC2; SOFT TICK, protease inhibitor, thiol protease INHI hydrolase inhibitor; 2.45A {Ornithodoros moubata}
Probab=21.25 E-value=90 Score=25.15 Aligned_cols=29 Identities=10% Similarity=0.328 Sum_probs=22.8
Q ss_pred CCceEEEEEeecCCcceEEEEEeeCCCCC
Q 017546 39 ENGVTRFLLTLIPHFRKVLLSAFECPHCG 67 (369)
Q Consensus 39 ~~g~tr~llt~IP~FkeiiImSf~C~~CG 67 (369)
+...........|.....=+.+|.|+|=.
T Consensus 84 ~~~~C~~~V~~~PW~~~~~l~~~~~~~~~ 112 (115)
T 3l0r_A 84 QKSTCVAVIYHVPWQNQKSVTSYRCEHHH 112 (115)
T ss_dssp SCEEEEEEEEEEGGGTEEEEEEEEECC--
T ss_pred ceeEEEEEEEEecCCCeeEEEEEEccccc
Confidence 33456678888999999999999999854
No 123
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.15 E-value=34 Score=20.08 Aligned_cols=11 Identities=27% Similarity=0.797 Sum_probs=8.3
Q ss_pred eeCCCCCCCcc
Q 017546 61 FECPHCGERNN 71 (369)
Q Consensus 61 f~C~~CGyrnn 71 (369)
|.|+.||....
T Consensus 10 ~~C~~C~k~f~ 20 (36)
T 2elr_A 10 HLCDMCGKKFK 20 (36)
T ss_dssp CBCTTTCCBCS
T ss_pred eecCcCCCCcC
Confidence 67888887654
No 124
>2jox_A Churchill protein; zinc, transcription; NMR {Homo sapiens}
Probab=21.00 E-value=60 Score=26.63 Aligned_cols=43 Identities=23% Similarity=0.447 Sum_probs=33.0
Q ss_pred cceeeeeccCccCcccccceeEEEecCCCCeEEEEEeeCCCCCCC
Q 017546 279 EEVMTFPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYR 323 (369)
Q Consensus 279 ~ev~~~~~~Cp~C~~~~~~~m~~~~IP~F~eviims~~C~~CGyk 323 (369)
+||..|...|++|++-...+-+...+= ++-=+..+.|--||.-
T Consensus 51 eEiity~H~C~nC~HvIA~HeYtF~V~--~~yQeY~M~ClLCG~a 93 (106)
T 2jox_A 51 EEIVTYDHLCKNCHHVIARHEYTFSIM--DEFQEYTMLCLLCGKA 93 (106)
T ss_dssp EEEEEEEEEETTTCCEEEEEEEEEEEE--TTEEEEEEEETTTEEE
T ss_pred cEEEEEEEecCCCceEeeeeeEEEEEe--cCeeeeeeeeeeeCCc
Confidence 489999999999999877777766652 3445677888888854
No 125
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=20.85 E-value=26 Score=22.03 Aligned_cols=12 Identities=25% Similarity=0.706 Sum_probs=9.0
Q ss_pred eeeccCccCccc
Q 017546 283 TFPSTCGACAAS 294 (369)
Q Consensus 283 ~~~~~Cp~C~~~ 294 (369)
+|...||+|...
T Consensus 4 ef~vqcpvcqq~ 15 (29)
T 3vhs_A 4 EFQVQCPVCQQM 15 (29)
T ss_dssp -CEEECTTTCCE
T ss_pred ceeeeChHHHHh
Confidence 578889999754
No 126
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=26.00 E-value=21 Score=19.89 Aligned_cols=13 Identities=23% Similarity=0.703 Sum_probs=9.6
Q ss_pred EeeCCCCCCCccc
Q 017546 60 AFECPHCGERNNE 72 (369)
Q Consensus 60 Sf~C~~CGyrnnE 72 (369)
.|.|+.||...+.
T Consensus 2 ~~~C~~C~k~f~~ 14 (29)
T 2lvt_A 2 PCQCVMCGKAFTQ 14 (29)
Confidence 3789999987653
No 127
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=20.14 E-value=43 Score=23.11 Aligned_cols=44 Identities=18% Similarity=0.185 Sum_probs=25.2
Q ss_pred ccCCCCCCCceEEEEEeecCCcceEEEEEeeCCCCCCCccceeeCccc
Q 017546 32 SLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEI 79 (369)
Q Consensus 32 s~Cp~Cg~~g~tr~llt~IP~FkeiiImSf~C~~CGyrnnEVq~~g~i 79 (369)
-.|+.||+.-.....+..+ |-++ -.|.|+.||+....-.++.+.
T Consensus 15 ~~C~~C~k~F~~~~~l~~~-H~~~---k~~~C~~C~k~f~~~~~~~~~ 58 (62)
T 1vd4_A 15 FKCPVCSSTFTDLEANQLF-DPMT---GTFRCTFCHTEVEEDESAMPK 58 (62)
T ss_dssp EECSSSCCEEEHHHHHHHE-ETTT---TEEBCSSSCCBCEECTTCSCC
T ss_pred ccCCCCCchhccHHHhHhh-cCCC---CCEECCCCCCccccCcccccc
Confidence 4699999753221111111 1122 258999999988766655554
No 128
>2x5c_A Hypothetical protein ORF131; viral protein; HET: GOL; 1.80A {Pyrobaculum spherical virus}
Probab=20.12 E-value=47 Score=27.08 Aligned_cols=17 Identities=18% Similarity=0.470 Sum_probs=13.0
Q ss_pred eeeccCccCccccccee
Q 017546 283 TFPSTCGACAASCETRM 299 (369)
Q Consensus 283 ~~~~~Cp~C~~~~~~~m 299 (369)
-+.+.||.||+.+...+
T Consensus 50 fmhakcprcgaegsvsi 66 (131)
T 2x5c_A 50 FMHAKCPRCGAEGSVSI 66 (131)
T ss_dssp CCEEECTTTSCEEEEEE
T ss_pred eeeccCCCCCCccceEE
Confidence 35789999999975444
Done!