BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017548
(369 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 191 bits (485), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 122/324 (37%), Positives = 169/324 (52%), Gaps = 24/324 (7%)
Query: 44 DHLLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVT---- 99
DH L A+ ++ +K+ ++ Y EE +R V++ N++ + H T
Sbjct: 1 DHSLEAQ--WTKWKAMHNRLYGMNEE-GWRRAVWEKNMKMIELHNQEYREGKHSFTMAMN 57
Query: 100 KFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACG 159
F D+T EFR+ GL R + P+ + P DWR+ G VT VK+QG CG
Sbjct: 58 AFGDMTSEEFRQVMNGLQNRKPRKGKVFQEPLF--YEAPRSVDWREKGYVTPVKNQGQCG 115
Query: 160 SCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEY 219
S W+FSATGALEG F TG L+SLSEQ LVDC PE + GCNGGLM+ AF+Y
Sbjct: 116 SSWAFSATGALEGQMFRKTGRLISLSEQNLVDC---SGPE----GNEGCNGGLMDYAFQY 168
Query: 220 ILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVG 279
+ GG++ E+ YPY T+ SCK++ A + F I E + + GP++V
Sbjct: 169 VQDNGGLDSEESYPYEATE-ESCKYNPKYSVANDAGFVDIPKQEKALMKAVATVGPISVA 227
Query: 280 INA---VWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGEN 336
I+A ++ G P + +DHGVL+VGY GF YW++KNSWGE
Sbjct: 228 IDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGY---GFESTESDGNKYWLVKNSWGEE 284
Query: 337 WGENGYYKICMG-RNVCGVDSMVS 359
WG GY K+ RN CG+ S S
Sbjct: 285 WGMGGYVKMAKDRRNHCGIASAAS 308
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 190 bits (482), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 116/321 (36%), Positives = 168/321 (52%), Gaps = 29/321 (9%)
Query: 50 EHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVH----GVTKFSDLT 105
+HH+ L+K + K Y + E R +++ NL+ L +H G+ D+T
Sbjct: 9 DHHWHLWKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGMNHLGDMT 68
Query: 106 PSEFRRQFLGLNRRLRLPADAQKAPILPTND---LPTDFDWRDHGAVTGVKDQGACGSCW 162
E + L LR+P+ Q+ +N LP DWR+ G VT VK QG+CG+ W
Sbjct: 69 SEEV----MSLMSSLRVPSQWQRNITYKSNPNRILPDSVDWREKGCVTEVKYQGSCGAAW 124
Query: 163 SFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILK 222
+FSA GALE L TG+LVSLS Q LVD C E+ G + GCNGG M +AF+YI+
Sbjct: 125 AFSAVGALEAQLKLKTGKLVSLSAQNLVD----CSTEKYG--NKGCNGGFMTTAFQYIID 178
Query: 223 AGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVIS-SDEDQMAANLVKHGPLAVGIN 281
G++ + YPY D C++D AA S ++ + ED + + GP++VG++
Sbjct: 179 NKGIDSDASYPYKAMD-QKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVD 237
Query: 282 AVWMQ--TYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGE 339
A Y GV C + ++HGVL+VGYG K YW++KNSWG N+GE
Sbjct: 238 ARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGD-------LNGKEYWLVKNSWGHNFGE 290
Query: 340 NGYYKICMGR-NVCGVDSMVS 359
GY ++ + N CG+ S S
Sbjct: 291 EGYIRMARNKGNHCGIASFPS 311
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 188 bits (478), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 120/324 (37%), Positives = 168/324 (51%), Gaps = 24/324 (7%)
Query: 44 DHLLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVT---- 99
DH L A+ ++ +K+ ++ Y EE +R V++ N++ + H T
Sbjct: 5 DHSLEAQ--WTKWKAMHNRLYGMNEE-GWRRAVWEKNMKMIELHNQEYREGKHSFTMAMN 61
Query: 100 KFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACG 159
F D+T EFR+ G R + P+ + P DWR+ G VT VK+QG CG
Sbjct: 62 AFGDMTSEEFRQVMNGFQNRKPRKGKVFQEPLF--YEAPRSVDWREKGYVTPVKNQGQCG 119
Query: 160 SCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEY 219
S W+FSATGALEG F TG L+SLSEQ LVDC P+ + GCNGGLM+ AF+Y
Sbjct: 120 SXWAFSATGALEGQMFRKTGRLISLSEQNLVDC---SGPQ----GNEGCNGGLMDYAFQY 172
Query: 220 ILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVG 279
+ GG++ E+ YPY T+ SCK++ A + F I E + + GP++V
Sbjct: 173 VQDNGGLDSEESYPYEATE-ESCKYNPKYSVANDAGFVDIPKQEKALMKAVATVGPISVA 231
Query: 280 INA---VWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGEN 336
I+A ++ G P + +DHGVL+VGY GF YW++KNSWGE
Sbjct: 232 IDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGY---GFESTESDNNKYWLVKNSWGEE 288
Query: 337 WGENGYYKICMG-RNVCGVDSMVS 359
WG GY K+ RN CG+ S S
Sbjct: 289 WGMGGYVKMAKDRRNHCGIASAAS 312
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 187 bits (474), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 121/325 (37%), Positives = 174/325 (53%), Gaps = 43/325 (13%)
Query: 56 FKSKFSKTYATQEEHDYRFRVFKANLR-----RAKRRQLLDPTAVHGVTKFSDLTPSEFR 110
FK+ ++++Y +E +R ++F+ L K RQ L + GV F+D+TP E +
Sbjct: 25 FKTTYARSYVNAKEETFRKQIFQKKLETFEEHNEKYRQGLVSYTL-GVNLFTDMTPEEMK 83
Query: 111 RQFLGLNRRLRLPADAQK--APILPTNDL--------PTDFDWRDHGAVTGVKDQGACGS 160
GL +PAD K PI DL P FDWRD G V+ VK+QG+CGS
Sbjct: 84 AYTHGL----IMPADLHKNGIPIKTREDLGLNASVRYPASFDWRDQGMVSPVKNQGSCGS 139
Query: 161 CWSFSATGALEGAHFLSTGELV--SLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFE 218
W+FS+TGA+E ++ G S+SEQQLVDC GC+GG MN AF
Sbjct: 140 SWAFSSTGAIESQMKIANGAGYDSSVSEQQLVDCVPNA---------LGCSGGWMNDAFT 190
Query: 219 YILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLV-KHGPLA 277
Y+ + GG++ E YPY D G+C +D +++AA +S + +S ++ M A++V GP+A
Sbjct: 191 YVAQNGGIDSEGAYPYEMAD-GNCHYDPNQVAARLSGYVYLSGPDENMLADMVATKGPVA 249
Query: 278 VGINA-VWMQTYIGGVSCPYIC-GKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGE 335
V +A +Y GGV C H VLIVGYG+ + YW++KNSWG+
Sbjct: 250 VAFDADDPFGSYSGGVYYNPTCETNKFTHAVLIVGYGNE-------NGQDYWLVKNSWGD 302
Query: 336 NWGENGYYKICM-GRNVCGVDSMVS 359
WG +GY+KI N CG+ + S
Sbjct: 303 GWGLDGYFKIARNANNHCGIAGVAS 327
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160
pdb|3HWN|B Chain B, Cathepsin L With Az13010160
pdb|3HWN|C Chain C, Cathepsin L With Az13010160
pdb|3HWN|D Chain D, Cathepsin L With Az13010160
Length = 258
Score = 184 bits (468), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 108/266 (40%), Positives = 144/266 (54%), Gaps = 17/266 (6%)
Query: 98 VTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGA 157
+ F D+T EFR+ G R + P+ + P DWR+ G VT VK+QG
Sbjct: 2 MNAFGDMTSEEFRQVMNGFQNRKPRKGKVFQEPLF--YEAPRSVDWREKGYVTPVKNQGQ 59
Query: 158 CGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAF 217
CGSCW+FSATGALEG F TG L+SLSEQ LVDC P+ + GCNGGLM+ AF
Sbjct: 60 CGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCS---GPQ----GNEGCNGGLMDYAF 112
Query: 218 EYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLA 277
+Y+ GG++ E+ YPY T+ SCK++ A + F I E + + GP++
Sbjct: 113 QYVQDNGGLDSEESYPYEATE-ESCKYNPKYSVANDAGFVDIPKQEKALMKAVATVGPIS 171
Query: 278 VGINA---VWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWG 334
V I+A ++ G P + +DHGVL+VGY GF YW++KNSWG
Sbjct: 172 VAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGY---GFESTESDNNKYWLVKNSWG 228
Query: 335 ENWGENGYYKICMG-RNVCGVDSMVS 359
E WG GY K+ RN CG+ S S
Sbjct: 229 EEWGMGGYVKMAKDRRNHCGIASAAS 254
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq
pdb|1F29|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|B Chain B, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|C Chain C, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F2A|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (Ii)
pdb|1F2B|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Iii)
pdb|1F2C|A Chain A, Crystal Structure Analysis Of Cryzain Bound To Vinyl
Sulfone Derived Inhibitor (Iv)
pdb|1ME3|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain Non-
Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(Ii)
pdb|1ME4|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain
Non-Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(I)
pdb|1EWL|A Chain A, Crystal Structure Of Cruzain Bound To Wrr-99
pdb|1EWM|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-112
pdb|1EWO|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-204
pdb|1U9Q|X Chain X, Crystal Structure Of Cruzain Bound To An Alpha-Ketoester
pdb|2AIM|A Chain A, Cruzain Inhibited With
Benzoyl-Arginine-Alanine-Fluoromethylketone
pdb|2OZ2|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|2OZ2|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|3I06|A Chain A, Crystal Structure Of Cruzain Covalently Bound To A Purine
Nitrile
pdb|3KKU|A Chain A, Cruzain In Complex With A Non-Covalent Ligand
pdb|3LXS|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
pdb|3LXS|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
Length = 215
Score = 178 bits (452), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 104/227 (45%), Positives = 127/227 (55%), Gaps = 21/227 (9%)
Query: 138 PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECD 197
P DWR GAVT VKDQG CGSCW+FSA G +E FL+ L +LSEQ LV CD
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKT-- 59
Query: 198 PEESGSCDSGCNGGLMNSAFEYILKA--GGVEREKDYPYTGTDGGS--CKFDKSKIAAAV 253
DSGC+GGLMN+AFE+I++ G V E YPY +G S C + A +
Sbjct: 60 -------DSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATI 112
Query: 254 SNFSVISSDEDQMAANLVKHGPLAVGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGS 313
+ + DE Q+AA L +GP+AV ++A TY GGV + + LDHGVL+VGY
Sbjct: 113 TGHVELPQDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCV-SEQLDHGVLLVGYND 171
Query: 314 SGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSS 360
S PYWIIKNSW WGE GY +I G N C V SS
Sbjct: 172 SAAV-------PYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASS 211
>pdb|1AIM|A Chain A, Cruzain Inhibited By
Benzoyl-Tyrosine-Alanine-Fluoromethylketone
Length = 215
Score = 178 bits (452), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 104/227 (45%), Positives = 127/227 (55%), Gaps = 21/227 (9%)
Query: 138 PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECD 197
P DWR GAVT VKDQG CGSCW+FSA G +E FL+ L +LSEQ LV CD
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKT-- 59
Query: 198 PEESGSCDSGCNGGLMNSAFEYILKA--GGVEREKDYPYTGTDGGS--CKFDKSKIAAAV 253
DSGC+GGLMN+AFE+I++ G V E YPY +G S C + A +
Sbjct: 60 -------DSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATI 112
Query: 254 SNFSVISSDEDQMAANLVKHGPLAVGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGS 313
+ + DE Q+AA L +GP+AV ++A TY GGV + + LDHGVL+VGY
Sbjct: 113 TGHVELPQDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCV-SEALDHGVLLVGYND 171
Query: 314 SGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSS 360
S PYWIIKNSW WGE GY +I G N C V SS
Sbjct: 172 SAAV-------PYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASS 211
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
K777
pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
Major Cathepsin L Protease From T. Brucei Rhodesiense,
Bound To Inhibitor K11002
Length = 215
Score = 176 bits (447), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 101/229 (44%), Positives = 134/229 (58%), Gaps = 25/229 (10%)
Query: 138 PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECD 197
P DWR+ GAVT VKDQG CGSCW+FS G +EG ++ LVSLSEQ LV CD
Sbjct: 2 PAAVDWREKGAVTPVKDQGQCGSCWAFSTIGNIEGQWQVAGNPLVSLSEQMLVSCD---- 57
Query: 198 PEESGSCDSGCNGGLMNSAFEYILKA--GGVEREKDYPYTGTDG--GSCKFDKSKIAAAV 253
+ D GC GGLM++AF +I+ + G V E YPY +G C+ + +I AA+
Sbjct: 58 -----TIDFGCGGGLMDNAFNWIVNSNGGNVFTEASYPYVSGNGEQPQCQMNGHEIGAAI 112
Query: 254 SNFSVISSDEDQMAANLVKHGPLAVGINAVWMQTYIGGV--SCPYICGKYLDHGVLIVGY 311
++ + DED +AA L ++GPLA+ ++A Y GG+ SC + LDHGVL+VGY
Sbjct: 113 TDHVDLPQDEDAIAAYLAENGPLAIAVDATSFMDYNGGILTSC---TSEQLDHGVLLVGY 169
Query: 312 GSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSS 360
+ PYWIIKNSW WGE+GY +I G N C ++ VSS
Sbjct: 170 NDA-------SNPPYWIIKNSWSNMWGEDGYIRIEKGTNQCLMNQAVSS 211
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A
Tetrafluorophenoxymethyl Ketone Inhibitor
Length = 221
Score = 175 bits (444), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 102/227 (44%), Positives = 126/227 (55%), Gaps = 21/227 (9%)
Query: 138 PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECD 197
P DWR GAVT VKDQG CGSCW+FSA G +E FL+ L +L+EQ LV CD
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKT-- 59
Query: 198 PEESGSCDSGCNGGLMNSAFEYILKA--GGVEREKDYPYTGTDGGS--CKFDKSKIAAAV 253
DSGC+GGLMN+AFE+I++ G V E YPY +G S C + A +
Sbjct: 60 -------DSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATI 112
Query: 254 SNFSVISSDEDQMAANLVKHGPLAVGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGS 313
+ + DE Q+AA L +GP+AV ++A TY GGV + + LDHGVL+VGY
Sbjct: 113 TGHVELPQDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCV-SEQLDHGVLLVGYND 171
Query: 314 SGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSS 360
PYWIIKNSW WGE GY +I G N C V SS
Sbjct: 172 GAAV-------PYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASS 211
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
pdb|3HD3|B Chain B, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
Length = 215
Score = 175 bits (444), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 102/227 (44%), Positives = 126/227 (55%), Gaps = 21/227 (9%)
Query: 138 PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECD 197
P DWR GAVT VKDQG CGSCW+FSA G +E FL+ L +L+EQ LV CD
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKT-- 59
Query: 198 PEESGSCDSGCNGGLMNSAFEYILKA--GGVEREKDYPYTGTDGGS--CKFDKSKIAAAV 253
DSGC+GGLMN+AFE+I++ G V E YPY +G S C + A +
Sbjct: 60 -------DSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATI 112
Query: 254 SNFSVISSDEDQMAANLVKHGPLAVGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGS 313
+ + DE Q+AA L +GP+AV ++A TY GGV + + LDHGVL+VGY
Sbjct: 113 TGHVELPQDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCV-SEQLDHGVLLVGYND 171
Query: 314 SGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSS 360
PYWIIKNSW WGE GY +I G N C V SS
Sbjct: 172 GAAV-------PYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASS 211
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F
pdb|1M6D|B Chain B, Crystal Structure Of Human Cathepsin F
Length = 214
Score = 175 bits (443), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 105/227 (46%), Positives = 137/227 (60%), Gaps = 20/227 (8%)
Query: 138 PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECD 197
P ++DWR GAVT VKDQG CGSCW+FS TG +EG FL+ G L+SLSEQ+L+DCD
Sbjct: 2 PPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCD---- 57
Query: 198 PEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFS 257
D C GGL ++A+ I GG+E E DY Y G SC+F K + +
Sbjct: 58 -----KMDKACMGGLPSNAYSAIKNLGGLETEDDYSYQG-HMQSCQFSAEKAKVYIQDSV 111
Query: 258 VISSDEDQMAANLVKHGPLAVGINAVWMQTYIGGVSCPY--ICGKYL-DHGVLIVGYGSS 314
+S +E ++AA L K GP++V INA MQ Y G+S P +C +L DH VL+VGYG
Sbjct: 112 ELSQNEQKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYG-- 169
Query: 315 GFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSSV 361
+ + P+W IKNSWG +WGE GYY + G CGV++M SS
Sbjct: 170 -----QRSDVPFWAIKNSWGTDWGEKGYYYLHRGSGACGVNTMASSA 211
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 174 bits (440), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 119/325 (36%), Positives = 167/325 (51%), Gaps = 38/325 (11%)
Query: 50 EHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLL----DPTAVHGVTKFSDLT 105
+ +S FK K+Y++ E R +FK N+ + + T + +F D++
Sbjct: 24 QEQWSQFKLTHKKSYSSPIEEIRRQLIFKDNVAKIAEHNAKFEKGEVTYSKAMNQFGDMS 83
Query: 106 PSEF-------RRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGAC 158
EF + Q LR+P + K P L DWR + AV+ VKDQG C
Sbjct: 84 KEEFLAYVNRGKAQKPKHPENLRMPYVSSKKP------LAASVDWRSN-AVSEVKDQGQC 136
Query: 159 GSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFE 218
GS WSFS TGA+EG L G L SLSEQ L+DC S ++GC+GG M+SAF
Sbjct: 137 GSSWSFSTTGAVEGQLALQRGRLTSLSEQNLIDC-------SSSYGNAGCDGGWMDSAFS 189
Query: 219 YILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSN-FSVISSDEDQMAANLVKHGPLA 277
YI G+ E YPY G C+FD S+ +S + + S DE+ +A + + GP+A
Sbjct: 190 YIHDY-GIMSESAYPYE-AQGDYCRFDSSQSVTTLSGYYDLPSGDENSLADAVGQAGPVA 247
Query: 278 VGINAV-WMQTYIGGVSCPYICGKY-LDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGE 335
V I+A +Q Y GG+ C + L+HGVL+VGYGS + YWI+KNSWG
Sbjct: 248 VAIDATDELQFYSGGLFYDQTCNQSDLNHGVLVVGYGSD-------NGQDYWILKNSWGS 300
Query: 336 NWGENGYYKICMGR-NVCGVDSMVS 359
WGE+GY++ N CG+ + S
Sbjct: 301 GWGESGYWRQVRNYGNNCGIATAAS 325
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible
Inhibition Of Human Cathepsin L By Their Respective
Dipeptidyl Glyoxal And Diazomethylketone Inhibitors
pdb|3OF9|A Chain A, Structural Basis For Irreversible Inhibition Of Human
Cathepsin L By A Diazomethylketone Inhibitor
Length = 221
Score = 171 bits (434), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 99/228 (43%), Positives = 130/228 (57%), Gaps = 15/228 (6%)
Query: 136 DLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHE 195
+ P DWR+ G VT VK+QG CGSCW+FSATGALEG F TG L+SLSEQ LVDC
Sbjct: 1 EAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCS-- 58
Query: 196 CDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSN 255
P+ + GCNGGLM+ AF+Y+ GG++ E+ YPY T+ SCK++ A +
Sbjct: 59 -GPQG----NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATE-ESCKYNPKYSVANDTG 112
Query: 256 FSVISSDEDQMAANLVKHGPLAVGINA---VWMQTYIGGVSCPYICGKYLDHGVLIVGYG 312
F I E + + GP++V I+A ++ G P + +DHGVL+VGY
Sbjct: 113 FVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGY- 171
Query: 313 SSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMG-RNVCGVDSMVS 359
GF YW++KNSWGE WG GY K+ RN CG+ S S
Sbjct: 172 --GFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAAS 217
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
pdb|1FH0|B Chain B, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
Length = 221
Score = 171 bits (434), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 100/228 (43%), Positives = 129/228 (56%), Gaps = 16/228 (7%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
LP DWR G VT VK+Q CGSCW+FSATGALEG F TG+LVSLSEQ LVDC
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSR-- 58
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNF 256
P+ + GCNGG M AF+Y+ + GG++ E+ YPY D CK+ A + F
Sbjct: 59 -PQG----NQGCNGGFMARAFQYVKENGGLDSEESYPYVAVD-EICKYRPENSVAQDTGF 112
Query: 257 SVIS-SDEDQMAANLVKHGPLAVGINA--VWMQTYIGGVSC-PYICGKYLDHGVLIVGYG 312
+V++ E + + GP++V ++A Q Y G+ P K LDHGVL+VGY
Sbjct: 113 TVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGY- 171
Query: 313 SSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNV-CGVDSMVS 359
GF YW++KNSWG WG NGY KI +N CG+ + S
Sbjct: 172 --GFEGANSDNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAAS 217
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H8B|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|2XU3|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU4|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU5|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ2|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ8|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ9|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJB|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJC|A Chain A, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 171 bits (433), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 99/226 (43%), Positives = 129/226 (57%), Gaps = 15/226 (6%)
Query: 138 PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECD 197
P DWR+ G VT VK+QG CGSCW+FSATGALEG F TG L+SLSEQ LVDC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCS---G 58
Query: 198 PEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFS 257
P+ + GCNGGLM+ AF+Y+ GG++ E+ YPY T+ SCK++ A + F
Sbjct: 59 PQG----NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATE-ESCKYNPKYSVANDTGFV 113
Query: 258 VISSDEDQMAANLVKHGPLAVGINA---VWMQTYIGGVSCPYICGKYLDHGVLIVGYGSS 314
I E + + GP++V I+A ++ G P + +DHGVL+VGY
Sbjct: 114 DIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGY--- 170
Query: 315 GFAPIRFKEKPYWIIKNSWGENWGENGYYKICMG-RNVCGVDSMVS 359
GF YW++KNSWGE WG GY K+ RN CG+ S S
Sbjct: 171 GFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAAS 216
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|B Chain B, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|C Chain C, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|D Chain D, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|2XU1|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|B Chain B, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|C Chain C, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|D Chain D, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 171 bits (433), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 99/226 (43%), Positives = 129/226 (57%), Gaps = 15/226 (6%)
Query: 138 PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECD 197
P DWR+ G VT VK+QG CGSCW+FSATGALEG F TG L+SLSEQ LVDC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCS---G 58
Query: 198 PEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFS 257
P+ + GCNGGLM+ AF+Y+ GG++ E+ YPY T+ SCK++ A + F
Sbjct: 59 PQG----NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATE-ESCKYNPKYSVANDAGFV 113
Query: 258 VISSDEDQMAANLVKHGPLAVGINA---VWMQTYIGGVSCPYICGKYLDHGVLIVGYGSS 314
I E + + GP++V I+A ++ G P + +DHGVL+VGY
Sbjct: 114 DIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGY--- 170
Query: 315 GFAPIRFKEKPYWIIKNSWGENWGENGYYKICMG-RNVCGVDSMVS 359
GF YW++KNSWGE WG GY K+ RN CG+ S S
Sbjct: 171 GFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAAS 216
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 169 bits (429), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 110/318 (34%), Positives = 164/318 (51%), Gaps = 37/318 (11%)
Query: 56 FKSKFSKTYATQEEHDYRFRVFKANLRRAK----RRQLLDPTAVHGVTKFSDLTPSEFRR 111
+K ++K Y ++ +R +++ N++ + R L T G+ +F+D+T EF+
Sbjct: 8 WKRMYNKEYNGADDQ-HRRNIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTFEEFKA 66
Query: 112 QFLGLNRRLR------LPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFS 165
++L R +P +A + P DWR+ G VT VKDQG CGS W+FS
Sbjct: 67 KYLTEMSRASDILSHGVPYEANNRAV------PDKIDWRESGYVTEVKDQGNCGSGWAFS 120
Query: 166 ATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGG 225
TG +EG + + +S SEQQLVDC ++GC GGLM +A++Y LK G
Sbjct: 121 TTGTMEGQYMKNERTSISFSEQQLVDCSRPWG-------NNGCGGGLMENAYQY-LKQFG 172
Query: 226 VEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLV-KHGPLAVGINAVW 284
+E E YPYT + G C+++K A V+ F + S + NLV GP AV ++
Sbjct: 173 LETESSYPYTAVE-GQCRYNKQLGVAKVTGFYTVHSGSEVELKNLVGAEGPAAVAVDVES 231
Query: 285 -MQTYIGGVSCPYICGKY-LDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGY 342
Y G+ C ++H VL VGYG+ G YWI+KNSWG +WGE GY
Sbjct: 232 DFMMYRSGIYQSQTCSPLRVNHAVLAVGYGTQGGT-------DYWIVKNSWGLSWGERGY 284
Query: 343 YKICMGR-NVCGVDSMVS 359
++ R N+CG+ S+ S
Sbjct: 285 IRMVRNRGNMCGIASLAS 302
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor,
Chagasin, In Complex With Human Cathepsin L
Length = 221
Score = 168 bits (426), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 98/228 (42%), Positives = 129/228 (56%), Gaps = 15/228 (6%)
Query: 136 DLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHE 195
+ P DWR+ G VT VK+QG CGS W+FSATGALEG F TG L+SLSEQ LVDC
Sbjct: 1 EAPRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCS-- 58
Query: 196 CDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSN 255
P+ + GCNGGLM+ AF+Y+ GG++ E+ YPY T+ SCK++ A +
Sbjct: 59 -GPQ----GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATE-ESCKYNPKYSVANDTG 112
Query: 256 FSVISSDEDQMAANLVKHGPLAVGINA---VWMQTYIGGVSCPYICGKYLDHGVLIVGYG 312
F I E + + GP++V I+A ++ G P + +DHGVL+VGY
Sbjct: 113 FVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGY- 171
Query: 313 SSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMG-RNVCGVDSMVS 359
GF YW++KNSWGE WG GY K+ RN CG+ S S
Sbjct: 172 --GFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAAS 217
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3IV2|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3K24|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
pdb|3K24|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
Length = 220
Score = 168 bits (425), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 98/226 (43%), Positives = 128/226 (56%), Gaps = 15/226 (6%)
Query: 138 PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECD 197
P DWR+ G VT VK+QG CGS W+FSATGALEG F TG L+SLSEQ LVDC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCS---G 58
Query: 198 PEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFS 257
P+ + GCNGGLM+ AF+Y+ GG++ E+ YPY T+ SCK++ A + F
Sbjct: 59 PQ----GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATE-ESCKYNPKYSVANDTGFV 113
Query: 258 VISSDEDQMAANLVKHGPLAVGINA---VWMQTYIGGVSCPYICGKYLDHGVLIVGYGSS 314
I E + + GP++V I+A ++ G P + +DHGVL+VGY
Sbjct: 114 DIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGY--- 170
Query: 315 GFAPIRFKEKPYWIIKNSWGENWGENGYYKICMG-RNVCGVDSMVS 359
GF YW++KNSWGE WG GY K+ RN CG+ S S
Sbjct: 171 GFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAAS 216
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|B Chain B, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|C Chain C, Unreduced Cathepsin L In Complex With Stefin A
Length = 220
Score = 168 bits (425), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 98/226 (43%), Positives = 129/226 (57%), Gaps = 15/226 (6%)
Query: 138 PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECD 197
P DWR+ G VT VK+QG CGS W+FSATGALEG F TG L+SLSEQ LVDC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCS---G 58
Query: 198 PEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFS 257
P+ + GCNGGLM+ AF+Y+ GG++ E+ YPY T+ SCK++ A + F
Sbjct: 59 PQ----GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATE-ESCKYNPKYSVANDAGFV 113
Query: 258 VISSDEDQMAANLVKHGPLAVGINA---VWMQTYIGGVSCPYICGKYLDHGVLIVGYGSS 314
I E + + GP++V I+A ++ G P + +DHGVL+VGY
Sbjct: 114 DIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGY--- 170
Query: 315 GFAPIRFKEKPYWIIKNSWGENWGENGYYKICMG-RNVCGVDSMVS 359
GF + YW++KNSWGE WG GY K+ RN CG+ S S
Sbjct: 171 GFESTESDDNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAAS 216
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|B Chain B, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|C Chain C, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|D Chain D, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3KFQ|A Chain A, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|B Chain B, Unreduced Cathepsin V In Complex With Stefin A
Length = 221
Score = 167 bits (424), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 99/228 (43%), Positives = 128/228 (56%), Gaps = 16/228 (7%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
LP DWR G VT VK+Q CGS W+FSATGALEG F TG+LVSLSEQ LVDC
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSXWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSR-- 58
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNF 256
P+ + GCNGG M AF+Y+ + GG++ E+ YPY D CK+ A + F
Sbjct: 59 -PQG----NQGCNGGFMARAFQYVKENGGLDSEESYPYVAVD-EICKYRPENSVAQDTGF 112
Query: 257 SVIS-SDEDQMAANLVKHGPLAVGINA--VWMQTYIGGVSC-PYICGKYLDHGVLIVGYG 312
+V++ E + + GP++V ++A Q Y G+ P K LDHGVL+VGY
Sbjct: 113 TVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGY- 171
Query: 313 SSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNV-CGVDSMVS 359
GF YW++KNSWG WG NGY KI +N CG+ + S
Sbjct: 172 --GFEGANSDNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAAS 217
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3BC3|B Chain B, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3H8C|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
pdb|3H8C|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
Length = 220
Score = 167 bits (424), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 98/226 (43%), Positives = 126/226 (55%), Gaps = 15/226 (6%)
Query: 138 PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECD 197
P DWR+ G VT VK+QG CGS W+FSATGALEG F TG L+SLSEQ LVDC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 198 PEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFS 257
E GCNGGLM+ AF+Y+ GG++ E+ YPY T+ SCK++ A + F
Sbjct: 62 NE-------GCNGGLMDYAFQYVQDNGGLDSEESYPYEATE-ESCKYNPKYSVANDTGFV 113
Query: 258 VISSDEDQMAANLVKHGPLAVGINA---VWMQTYIGGVSCPYICGKYLDHGVLIVGYGSS 314
I E + + GP++V I+A ++ G P + +DHGVL+VGY
Sbjct: 114 DIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGY--- 170
Query: 315 GFAPIRFKEKPYWIIKNSWGENWGENGYYKICMG-RNVCGVDSMVS 359
GF YW++KNSWGE WG GY K+ RN CG+ S S
Sbjct: 171 GFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAAS 216
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray
Crystal Structure Of A Plant Cysteine Protease Ervatamin
B: Insight Into The Structural Basis Of Its Stability
And Substrate Specificity
Length = 215
Score = 167 bits (422), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/232 (40%), Positives = 137/232 (59%), Gaps = 31/232 (13%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
LP+ DWR GAV +K+Q CGSCW+FSA A+E + + TG+L+SLSEQ+LVDCD
Sbjct: 1 LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCD--- 57
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNF 256
+ GCNGG MN+AF+YI+ GG++ +++YPY+ GSCK + ++ +++ F
Sbjct: 58 ------TASHGCNGGWMNNAFQYIITNGGIDTQQNYPYSAVQ-GSCKPYRLRV-VSINGF 109
Query: 257 SVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGV-SCPYICGKYLDHGVLIVGYGS 313
++ + + + V P++V + A Q Y G+ + P CG +HGV+IVGYG+
Sbjct: 110 QRVTRNNESALQSAVASQPVSVTVEAAGAPFQHYSSGIFTGP--CGTAQNHGVVIVGYGT 167
Query: 314 SGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNV------CGVDSMVS 359
K YWI++NSWG+NWG GY I M RNV CG+ + S
Sbjct: 168 Q-------SGKNYWIVRNSWGQNWGNQGY--IWMERNVASSAGLCGIAQLPS 210
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 165 bits (417), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 95/227 (41%), Positives = 130/227 (57%), Gaps = 18/227 (7%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
LP DWR+ G VT VK QG+CG+CW+FSA GALE L TG+LVSLS Q LVD C
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVD----C 56
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNF 256
E+ G + GCNGG M +AF+YI+ G++ + YPY D C++D AA S +
Sbjct: 57 STEKYG--NKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMD-QKCQYDSKYRAATCSKY 113
Query: 257 SVIS-SDEDQMAANLVKHGPLAVGINAVWMQ--TYIGGVSCPYICGKYLDHGVLIVGYGS 313
+ + ED + + GP++VG++A Y GV C + ++HGVL+VGYG
Sbjct: 114 TELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGD 173
Query: 314 SGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 359
K YW++KNSWG N+GE GY ++ + N CG+ S S
Sbjct: 174 -------LNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPS 213
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 164 bits (416), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 95/227 (41%), Positives = 130/227 (57%), Gaps = 18/227 (7%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
LP DWR+ G VT VK QG+CG+CW+FSA GALE L TG+LVSLS Q LVD C
Sbjct: 4 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVD----C 59
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNF 256
E+ G + GCNGG M +AF+YI+ G++ + YPY D C++D AA S +
Sbjct: 60 STEKYG--NKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMD-QKCQYDSKYRAATCSKY 116
Query: 257 SVIS-SDEDQMAANLVKHGPLAVGINAVWMQ--TYIGGVSCPYICGKYLDHGVLIVGYGS 313
+ + ED + + GP++VG++A Y GV C + ++HGVL+VGYG
Sbjct: 117 TELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGD 176
Query: 314 SGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 359
K YW++KNSWG N+GE GY ++ + N CG+ S S
Sbjct: 177 -------LNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPS 216
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 164 bits (415), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 115/328 (35%), Positives = 158/328 (48%), Gaps = 47/328 (14%)
Query: 52 HFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVH----GVTKFSDLTPS 107
H+ L+K K Y + + R +++ NL+ L VH + D+T
Sbjct: 10 HWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHLGDMTSE 69
Query: 108 EFRRQFLGL---------NRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGAC 158
E ++ GL N L +P +AP D+R G VT VK+QG C
Sbjct: 70 EVVQKMTGLKVPLSHSRSNDTLYIPEWEGRAP--------DSVDYRKKGYVTPVKNQGQC 121
Query: 159 GSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFE 218
GSCW+FS+ GALEG TG+L++LS Q LVDC E D GC GG M +AF+
Sbjct: 122 GSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND---------GCGGGYMTNAFQ 172
Query: 219 YILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVI-SSDEDQMAANLVKHGPLA 277
Y+ K G++ E YPY G + SC ++ + AA + I +E + + + GP++
Sbjct: 173 YVQKNRGIDSEDAYPYVGQE-ESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVS 231
Query: 278 VGINA--VWMQTYIGGVSCPYICGK-YLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWG 334
V I+A Q Y GV C L+H VL VGYG K +WIIKNSWG
Sbjct: 232 VAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQ-------KGNKHWIIKNSWG 284
Query: 335 ENWGENGYYKICMGR---NVCGVDSMVS 359
ENWG GY I M R N CG+ ++ S
Sbjct: 285 ENWGNKGY--ILMARNKNNACGIANLAS 310
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 164 bits (415), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 94/227 (41%), Positives = 131/227 (57%), Gaps = 18/227 (7%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
LP DWR+ G VT VK QG+CG+CW+FSA GALE L TG+LVSLS Q LVD C
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVD----C 57
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNF 256
E+ G + GCNGG M +AF+YI+ G++ + YPY D C++D AA S +
Sbjct: 58 STEKYG--NKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMD-QKCQYDSKYRAATCSKY 114
Query: 257 SVIS-SDEDQMAANLVKHGPLAVGINAVWMQTYI--GGVSCPYICGKYLDHGVLIVGYGS 313
+ + ED + + GP++VG++A ++ GV C + ++HGVL+VGYG
Sbjct: 115 TELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGD 174
Query: 314 SGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 359
K YW++KNSWG N+GE GY ++ + N CG+ S S
Sbjct: 175 -------LNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPS 214
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 164 bits (415), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 94/227 (41%), Positives = 131/227 (57%), Gaps = 18/227 (7%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
LP DWR+ G VT VK QG+CG+CW+FSA GALE L TG+LVSLS Q LVD C
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVD----C 56
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNF 256
E+ G + GCNGG M +AF+YI+ G++ + YPY D C++D AA S +
Sbjct: 57 STEKYG--NKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMD-QKCQYDSKYRAATCSKY 113
Query: 257 SVIS-SDEDQMAANLVKHGPLAVGINAVWMQTYI--GGVSCPYICGKYLDHGVLIVGYGS 313
+ + ED + + GP++VG++A ++ GV C + ++HGVL+VGYG
Sbjct: 114 TELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGD 173
Query: 314 SGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 359
K YW++KNSWG N+GE GY ++ + N CG+ S S
Sbjct: 174 -------LNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPS 213
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 164 bits (415), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 94/227 (41%), Positives = 131/227 (57%), Gaps = 18/227 (7%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
LP DWR+ G VT VK QG+CG+CW+FSA GALE L TG+LVSLS Q LVD C
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVD----C 57
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNF 256
E+ G + GCNGG M +AF+YI+ G++ + YPY D C++D AA S +
Sbjct: 58 STEKYG--NKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMD-QKCQYDSKYRAATCSKY 114
Query: 257 SVIS-SDEDQMAANLVKHGPLAVGINAVWMQTYI--GGVSCPYICGKYLDHGVLIVGYGS 313
+ + ED + + GP++VG++A ++ GV C + ++HGVL+VGYG
Sbjct: 115 TELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGD 174
Query: 314 SGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 359
K YW++KNSWG N+GE GY ++ + N CG+ S S
Sbjct: 175 -------LNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPS 214
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 163 bits (413), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 131/227 (57%), Gaps = 18/227 (7%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
LP DWR+ G VT VK QG+CG+CW+FSA GALE L TG+LV+LS Q LVD C
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVTLSAQNLVD----C 56
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNF 256
E+ G + GCNGG M +AF+YI+ G++ + YPY D C++D AA S +
Sbjct: 57 STEKYG--NKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMD-QKCQYDSKYRAATCSKY 113
Query: 257 SVIS-SDEDQMAANLVKHGPLAVGINAVWMQTYI--GGVSCPYICGKYLDHGVLIVGYGS 313
+ + ED + + GP++VG++A ++ GV C + ++HGVL+VGYG
Sbjct: 114 TELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGD 173
Query: 314 SGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 359
K YW++KNSWG N+GE GY ++ + N CG+ S S
Sbjct: 174 -------LNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPS 213
>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 224
Score = 163 bits (412), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 98/220 (44%), Positives = 125/220 (56%), Gaps = 19/220 (8%)
Query: 131 ILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLV 190
+LP+ +LP DWR G VT VKDQ CGSCW+FS TGALEGAH TG+LVSLSEQ+L+
Sbjct: 2 VLPS-ELPAGVDWRSRGCVTPVKDQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQELM 60
Query: 191 DCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIA 250
DC + C+GG MN AF+Y+L +GG+ E YPY D C+ +
Sbjct: 61 DCSR-------AEGNQSCSGGEMNDAFQYVLDSGGICSEDAYPYLARD-EECRAQSCEKV 112
Query: 251 AAVSNFS-VISSDEDQMAANLVKHGPLAVGINAVWM--QTYIGGVSCPYICGKYLDHGVL 307
+ F V E M A L K P+++ I A M Q Y GV CG LDHGVL
Sbjct: 113 VKILGFKDVPRRSEAAMKAALAKS-PVSIAIEADQMPFQFYHEGVF-DASCGTDLDHGVL 170
Query: 308 IVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICM 347
+VGYG+ + +K +WI+KNSWG WG +GY + M
Sbjct: 171 LVGYGTD-----KESKKDFWIMKNSWGTGWGRDGYMYMAM 205
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra-
14009
Length = 217
Score = 163 bits (412), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/227 (41%), Positives = 129/227 (56%), Gaps = 18/227 (7%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
LP DWR+ G VT VK QG+CG+CW+FSA GALE L TG+LVSLS Q LVD C
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVD----C 56
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNF 256
E+ G + GCNGG M +AF+YI+ G++ + YPY D C++D AA +
Sbjct: 57 STEKYG--NKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMD-QKCQYDSKYRAATCRKY 113
Query: 257 SVIS-SDEDQMAANLVKHGPLAVGINAVWMQ--TYIGGVSCPYICGKYLDHGVLIVGYGS 313
+ + ED + + GP++VG++A Y GV C + ++HGVL+VGYG
Sbjct: 114 TELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGD 173
Query: 314 SGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 359
K YW++KNSWG N+GE GY ++ + N CG+ S S
Sbjct: 174 -------LNGKEYWLVKNSWGHNFGEKGYIRMARNKGNHCGIASFPS 213
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra-
14013
Length = 217
Score = 162 bits (409), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 130/227 (57%), Gaps = 18/227 (7%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
LP DWR+ G VT VK QG+CG+CW+FSA GALE L TG+LVSLS Q LVD C
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVD----C 56
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNF 256
++ G + GCNGG M +AF+YI+ G++ + YPY D C++D + AA +
Sbjct: 57 STKKYG--NKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMD-QKCQYDSAYRAATCRKY 113
Query: 257 SVIS-SDEDQMAANLVKHGPLAVGINAVWMQ--TYIGGVSCPYICGKYLDHGVLIVGYGS 313
+ + ED + + GP++VG++A Y GV C + ++HGVL+VGYG
Sbjct: 114 TELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGD 173
Query: 314 SGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 359
K YW++KNSWG N+GE GY ++ + N CG+ S S
Sbjct: 174 -------LNGKEYWLVKNSWGHNFGEKGYIRMARNKGNHCGIASFPS 213
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 161 bits (408), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 94/225 (41%), Positives = 126/225 (56%), Gaps = 23/225 (10%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
+P DWR GAVT VKDQG CGSCW+FS A+EG + + T +LVSLSEQ+LVDCD +
Sbjct: 2 VPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTD- 60
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKI-AAAVSN 255
+ GCNGGLM+ AFE+I + GG+ E +YPY D G+C K A ++
Sbjct: 61 -------QNQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYD-GTCDVSKENAPAVSIDG 112
Query: 256 FSVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGVSCPYICGKYLDHGVLIVGYGS 313
+ +++ V + P++V I+A Q Y GV CG LDHGV IVGYG+
Sbjct: 113 HENVPENDENALLKAVANQPVSVAIDAGGSDFQFYSEGVFTGS-CGTELDHGVAIVGYGT 171
Query: 314 SGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMG----RNVCGV 354
+ YW +KNSWG WGE GY ++ G +CG+
Sbjct: 172 T------IDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGI 210
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 161 bits (407), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 94/227 (41%), Positives = 129/227 (56%), Gaps = 18/227 (7%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
LP DWR+ G VT VK QG+CG+ W+FSA GALE L TG+LVSLS Q LVD C
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVD----C 56
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNF 256
E+ G + GCNGG M +AF+YI+ G++ + YPY D C++D AA S +
Sbjct: 57 STEKYG--NKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMD-QKCQYDSKYRAATCSKY 113
Query: 257 SVIS-SDEDQMAANLVKHGPLAVGINAVWMQ--TYIGGVSCPYICGKYLDHGVLIVGYGS 313
+ + ED + + GP++VG++A Y GV C + ++HGVL+VGYG
Sbjct: 114 TELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGD 173
Query: 314 SGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 359
K YW++KNSWG N+GE GY ++ + N CG+ S S
Sbjct: 174 -------LNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPS 213
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
Length = 222
Score = 161 bits (407), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 130/227 (57%), Gaps = 18/227 (7%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
LP DWR+ G VT VK QG+CG+ W+FSA GALE L TG+LVSLS Q LVD C
Sbjct: 3 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVD----C 58
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNF 256
E+ G + GCNGG M +AF+YI+ G++ + YPY D C++D AA S +
Sbjct: 59 STEKYG--NKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMD-QKCQYDSKYRAATCSKY 115
Query: 257 SVIS-SDEDQMAANLVKHGPLAVGINAVWMQTYI--GGVSCPYICGKYLDHGVLIVGYGS 313
+ + ED + + GP++VG++A ++ GV C + ++HGVL+VGYG
Sbjct: 116 TELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGD 175
Query: 314 SGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 359
K YW++KNSWG N+GE GY ++ + N CG+ S S
Sbjct: 176 -------LNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPS 215
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 160 bits (406), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 130/227 (57%), Gaps = 18/227 (7%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
LP DWR+ G VT VK QG+CG+ W+FSA GALE L TG+LVSLS Q LVD C
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVD----C 57
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNF 256
E+ G + GCNGG M +AF+YI+ G++ + YPY D C++D AA S +
Sbjct: 58 STEKYG--NKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMD-QKCQYDSKYRAATCSKY 114
Query: 257 SVIS-SDEDQMAANLVKHGPLAVGINAVWMQTYI--GGVSCPYICGKYLDHGVLIVGYGS 313
+ + ED + + GP++VG++A ++ GV C + ++HGVL+VGYG
Sbjct: 115 TELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGD 174
Query: 314 SGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 359
K YW++KNSWG N+GE GY ++ + N CG+ S S
Sbjct: 175 -------LNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPS 214
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 160 bits (405), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 84/212 (39%), Positives = 124/212 (58%), Gaps = 20/212 (9%)
Query: 135 NDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDH 194
+DLP DWR++GAV VK+QG CGSCW+FS A+EG + + TG+L+SLSEQQLVDC
Sbjct: 1 DDLPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCT- 59
Query: 195 ECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVS 254
+ + GC GG MN AF++I+ GG+ E+ YPY G D G C + ++
Sbjct: 60 --------TANHGCRGGWMNPAFQFIVNNGGINSEETYPYRGQD-GICNSTVNAPVVSID 110
Query: 255 NFSVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGVSCPYICGKYLDHGVLIVGYG 312
++ + S +Q V + P++V ++A Q Y G+ C +H + +VGYG
Sbjct: 111 SYENVPSHNEQSLQKAVANQPVSVTMDAAGRDFQLYRSGIFTGS-CNISANHALTVVGYG 169
Query: 313 SSGFAPIRFKEKPYWIIKNSWGENWGENGYYK 344
+ +K +WI+KNSWG+NWGE+GY +
Sbjct: 170 TE-------NDKDFWIVKNSWGKNWGESGYIR 194
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 160 bits (405), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 90/218 (41%), Positives = 122/218 (55%), Gaps = 22/218 (10%)
Query: 134 TNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCD 193
+DLP DWR GAVTGVKDQG CGSCW+FS ++EG + + TG LVSLSEQ+L+DCD
Sbjct: 1 VSDLPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCD 60
Query: 194 HECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDK----SKI 249
+ + GC GGLM++AFEYI GG+ E YPY G+C + S +
Sbjct: 61 T--------ADNDGCQGGLMDNAFEYIKNNGGLITEAAYPYRAAR-GTCNVARAAQNSPV 111
Query: 250 AAAVSNFSVISSDEDQMAANLVKHGPLAVGINAV--WMQTYIGGVSCPYICGKYLDHGVL 307
+ + ++ ++ A V + P++V + A Y GV CG LDHGV
Sbjct: 112 VVHIDGHQDVPANSEEDLARAVANQPVSVAVEASGKAFMFYSEGVFTGE-CGTELDHGVA 170
Query: 308 IVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKI 345
+VGYG + K YW +KNSWG +WGE GY ++
Sbjct: 171 VVGYG------VAEDGKAYWTVKNSWGPSWGEQGYIRV 202
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S
Length = 217
Score = 160 bits (404), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 130/227 (57%), Gaps = 18/227 (7%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
LP DWR+ G VT VK QG+CG+ W+FSA GALE L TG+LVSLS Q LVD C
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVD----C 56
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNF 256
E+ G + GCNGG M +AF+YI+ G++ + YPY D C++D AA S +
Sbjct: 57 STEKYG--NKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMD-LKCQYDSKYRAATCSKY 113
Query: 257 SVIS-SDEDQMAANLVKHGPLAVGINAVWMQTYI--GGVSCPYICGKYLDHGVLIVGYGS 313
+ + ED + + GP++VG++A ++ GV C + ++HGVL+VGYG
Sbjct: 114 TELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGD 173
Query: 314 SGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 359
K YW++KNSWG N+GE GY ++ + N CG+ S S
Sbjct: 174 -------LNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPS 213
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1
Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H
Length = 220
Score = 157 bits (396), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 94/228 (41%), Positives = 124/228 (54%), Gaps = 21/228 (9%)
Query: 138 PTDFDWRDHGA-VTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
P DWR G V+ VK+QG+CGSCW+FS TGALE A ++TG+++SL+EQQLVDC
Sbjct: 2 PPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNF 61
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNF 256
+ + GC GGL + AFEYI G+ E YPY G D CKF K A V +
Sbjct: 62 N-------NHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQD-DHCKFQPDKAIAFVKDV 113
Query: 257 SVIS-SDEDQMAANLVKHGPLAVGINAVW-MQTYIGGVSCPYICGKYLD---HGVLIVGY 311
+ I+ +DE+ M + + P++ Y G+ C K D H VL VGY
Sbjct: 114 ANITMNDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSSTSCHKTPDKVNHAVLAVGY 173
Query: 312 GSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVS 359
G PYWI+KNSWG WG NGY+ I G+N+CG+ + S
Sbjct: 174 GEE-------NGIPYWIVKNSWGPQWGMNGYFLIERGKNMCGLAACAS 214
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 155 bits (393), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/222 (40%), Positives = 124/222 (55%), Gaps = 23/222 (10%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
LP DWR GAV +KDQG CGSCW+FS A+EG + ++TG+L+SLSEQ+LVDC
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSCWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFD-KSKIAAAVSN 255
+ GC+GG M F++I+ GG+ E +YPYT + G C D + + ++
Sbjct: 61 NTR-------GCDGGFMTDGFQFIINNGGINTEANYPYTAEE-GQCNLDLQQEKYVSIDT 112
Query: 256 FSVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGV-SCPYICGKYLDHGVLIVGYG 312
+ + + + V + P++V + A Q Y G+ + P CG +DH V IVGYG
Sbjct: 113 YENVPYNNEWALQTAVAYQPVSVALEAAGYNFQHYSSGIFTGP--CGTAVDHAVTIVGYG 170
Query: 313 SSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGV 354
+ G YWI+KNSWG WGE GY +I RNV GV
Sbjct: 171 TEGGI-------DYWIVKNSWGTTWGEEGYMRI--QRNVGGV 203
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
pdb|3H7D|E Chain E, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
Length = 215
Score = 154 bits (389), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 94/227 (41%), Positives = 126/227 (55%), Gaps = 22/227 (9%)
Query: 138 PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECD 197
P D+R+ G VT VK+QG CGSCW+FS+ GALEG TG+L++LS Q LVDC E D
Sbjct: 2 PDSVDYREKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 61
Query: 198 PEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFS 257
GC GG M +AF+Y+ K G++ E YPY G + SC ++ + AA +
Sbjct: 62 ---------GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQE-ESCMYNPTGKAAKCRGYR 111
Query: 258 VI-SSDEDQMAANLVKHGPLAVGINA--VWMQTYIGGVSCPYICGK-YLDHGVLIVGYGS 313
I +E + + + GP++V I+A Q Y GV C L+H VL VGYG
Sbjct: 112 EIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGE 171
Query: 314 SGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 359
S K +WIIKNSWGENWG GY K+ + N CG+ ++ S
Sbjct: 172 S-------KGNKHWIIKNSWGENWGMGGYIKMARNKNNACGIANLAS 211
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of
Crocus Sativus At 1.3 A Resolution
Length = 222
Score = 154 bits (388), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 92/229 (40%), Positives = 125/229 (54%), Gaps = 28/229 (12%)
Query: 138 PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECD 197
P DWR GAVT VKDQGACG CW+F ATGA+EG ++TG L+S+SEQQ+VDCD
Sbjct: 2 PASIDWRKKGAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCDTXXX 61
Query: 198 PEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFS 257
G D AF +++ GG+ + +YPYTG D G+C +K IAA + ++
Sbjct: 62 XXXGGDAD---------DAFRWVITNGGIASDANYPYTGVD-GTCDLNK-PIAARIDGYT 110
Query: 258 VISSDEDQMAANLVKHGPLAVGI--NAVWMQTYIG-GVSCPYICG---KYLDHGVLIVGY 311
+ + + + K P++V I ++ Q Y G G+ C +DH VLIVGY
Sbjct: 111 NVPNSSSALLDAVAKQ-PVSVNIYTSSTSFQLYTGPGIFAGSSCSDDPATVDHTVLIVGY 169
Query: 312 GSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRN----VCGVDS 356
GS+G YWI+KNSWG WG +GY I N VC +D+
Sbjct: 170 GSNG------TNADYWIVKNSWGTEWGIDGYILIRRNTNRPDGVCAIDA 212
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera
pdb|2VHS|B Chain B, Cathsilicatein, A Chimera
pdb|2VHS|C Chain C, Cathsilicatein, A Chimera
pdb|2VHS|D Chain D, Cathsilicatein, A Chimera
Length = 217
Score = 154 bits (388), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 92/226 (40%), Positives = 124/226 (54%), Gaps = 18/226 (7%)
Query: 138 PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECD 197
P DWR+ G VT VK+QG CG+ ++FSATGALEG F TG L+SLSEQ LVDC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGASYAFSATGALEGQMFRKTGRLISLSEQNLVDCS---G 58
Query: 198 PEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFS 257
P+ + GCNGGLM+ AF+Y+ GG++ E+ YPY T+ SCK++ A F
Sbjct: 59 PQ----GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATE-ESCKYNPKYSVANDVGFV 113
Query: 258 VISSDEDQMAANLVKHGPLAVGINA---VWMQTYIGGVSCPYICGKYLDHGVLIVGYGSS 314
I E + + GP++V I+A ++ G L+H +L+VGYG
Sbjct: 114 DIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFSSDCSSSSLNHAMLVVGYG-- 171
Query: 315 GFAPIRFKEKPYWIIKNSWGENWGENGYYKICMG-RNVCGVDSMVS 359
+ YW++KNSWGE WG GY K+ RN CG+ S S
Sbjct: 172 ----FISNNQKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAAS 213
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5V|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5X|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 152 bits (384), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 88/222 (39%), Positives = 123/222 (55%), Gaps = 23/222 (10%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
LP DWR GAV +KDQG CGS W+FS A+EG + ++TG+L+SLSEQ+LVDC
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSXWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFD-KSKIAAAVSN 255
+ GC+GG M F++I+ GG+ E +YPYT + G C D + + ++
Sbjct: 61 NTR-------GCDGGFMTDGFQFIINNGGINTEANYPYTAEE-GQCNLDLQQEKYVSIDT 112
Query: 256 FSVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGV-SCPYICGKYLDHGVLIVGYG 312
+ + + + V + P++V + A Q Y G+ + P CG +DH V IVGYG
Sbjct: 113 YENVPYNNEWALQTAVAYQPVSVALEAAGYNFQHYSSGIFTGP--CGTAVDHAVTIVGYG 170
Query: 313 SSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGV 354
+ G YWI+KNSWG WGE GY +I RNV GV
Sbjct: 171 TEGGI-------DYWIVKNSWGTTWGEEGYMRI--QRNVGGV 203
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 150 bits (380), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 108/341 (31%), Positives = 156/341 (45%), Gaps = 37/341 (10%)
Query: 25 NDDDAMIRQVVPSDGEQSEDHLLNAEHHFSLFKS---KFSKTYATQEEHDYRFRVFKANL 81
+DDD M +V S++ L + E LF+S K +K Y +E YRF +FK NL
Sbjct: 39 DDDDKMDFSIVG----YSQNDLTSTERLIQLFESWMLKHNKIYKNIDEKIYRFEIFKDNL 94
Query: 82 RRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTND--LPT 139
+ + + G+ F+D++ EF+ ++ G + +L D +P
Sbjct: 95 KYIDETNKKNNSYWLGLNVFADMSNDEFKEKYTGSIAGNYTTTELSYEEVLNDGDVNIPE 154
Query: 140 DFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPE 199
DWR GAVT VK+QG+CGS W+FSA +E + TG L SEQ+L+DCD
Sbjct: 155 YVDWRQKGAVTPVKNQGSCGSAWAFSAVSTIESIIKIRTGNLNEYSEQELLDCDRRS--- 211
Query: 200 ESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVI 259
GCNGG SA + + + G+ YPY G +K AA +
Sbjct: 212 ------YGCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQV 264
Query: 260 SSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFA 317
+ + + P++V + A Q Y GG+ CG +DH V VGYG +
Sbjct: 265 QPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVG-PCGNKVDHAVAAVGYGPN--- 320
Query: 318 PIRFKEKPYWIIKNSWGENWGENGYYKICMGR----NVCGV 354
Y +I+NSWG WGENGY +I G VCG+
Sbjct: 321 --------YILIRNSWGTGWGENGYIRIKRGTGNSYGVCGL 353
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abe854
pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abi491
pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abj688
pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
Complex With Human Cathepsin K
Length = 217
Score = 150 bits (379), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/229 (41%), Positives = 124/229 (54%), Gaps = 26/229 (11%)
Query: 138 PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECD 197
P D+R G VT VK+QG CGSCW+FS+ GALEG TG+L++LS Q LVDC E D
Sbjct: 4 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 63
Query: 198 PEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFS 257
GC GG M +AF+Y+ K G++ E YPY G + SC ++ + AA +
Sbjct: 64 ---------GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQE-ESCMYNPTGKAAKCRGYR 113
Query: 258 VI-SSDEDQMAANLVKHGPLAVGINA--VWMQTYIGGVSCPYICGK-YLDHGVLIVGYGS 313
I +E + + + GP++V I+A Q Y GV C L+H VL VGYG
Sbjct: 114 EIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGI 173
Query: 314 SGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR---NVCGVDSMVS 359
K +WIIKNSWGENWG GY I M R N CG+ ++ S
Sbjct: 174 Q-------KGNKHWIIKNSWGENWGNKGY--ILMARNKNNACGIANLAS 213
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized
Norleucine Aldehyde
Length = 214
Score = 150 bits (379), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/229 (41%), Positives = 124/229 (54%), Gaps = 26/229 (11%)
Query: 138 PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECD 197
P D+R G VT VK+QG CGSCW+FS+ GALEG TG+L++LS Q LVDC E D
Sbjct: 1 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 60
Query: 198 PEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFS 257
GC GG M +AF+Y+ K G++ E YPY G + SC ++ + AA +
Sbjct: 61 ---------GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQE-ESCMYNPTGKAAKCRGYR 110
Query: 258 VI-SSDEDQMAANLVKHGPLAVGINA--VWMQTYIGGVSCPYICGK-YLDHGVLIVGYGS 313
I +E + + + GP++V I+A Q Y GV C L+H VL VGYG
Sbjct: 111 EIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGI 170
Query: 314 SGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR---NVCGVDSMVS 359
K +WIIKNSWGENWG GY I M R N CG+ ++ S
Sbjct: 171 Q-------KGNKHWIIKNSWGENWGNKGY--ILMARNKNNACGIANLAS 210
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
Vinyl Sulfone Inhibitor
pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
Oxoethylcarbamate
pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide
Inhibitor
pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
Inhibitor
pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
Myocrisin
pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor E-64
pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Symmetric Diacylaminomethyl
Ketone Inhibitor
pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Propanone Inhibitor
pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Symmetric Biscarbohydrazide
Inhibitor
pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Thiazolhydrazide Inhibitor
pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent
Benzyloxybenzoylcarbohydrazide Inhibitor
pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Peptidomimetic Inhibitor
pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin Sulfate
Complex.
pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
Triazine Ligand
pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
Pyrimidine Inhibitor
pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective 2-Cyano-Pyrimidine
Inhibitor
pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
Inhibitor With A Benzyl P3 Group.
pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine
Inhibitor With Improved Selectivity Over Herg
pdb|4DMX|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|B Chain B, Cathepsin K Inhibitor
Length = 215
Score = 150 bits (379), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/229 (41%), Positives = 124/229 (54%), Gaps = 26/229 (11%)
Query: 138 PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECD 197
P D+R G VT VK+QG CGSCW+FS+ GALEG TG+L++LS Q LVDC E D
Sbjct: 2 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 61
Query: 198 PEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFS 257
GC GG M +AF+Y+ K G++ E YPY G + SC ++ + AA +
Sbjct: 62 ---------GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQE-ESCMYNPTGKAAKCRGYR 111
Query: 258 VI-SSDEDQMAANLVKHGPLAVGINA--VWMQTYIGGVSCPYICGK-YLDHGVLIVGYGS 313
I +E + + + GP++V I+A Q Y GV C L+H VL VGYG
Sbjct: 112 EIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGI 171
Query: 314 SGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR---NVCGVDSMVS 359
K +WIIKNSWGENWG GY I M R N CG+ ++ S
Sbjct: 172 Q-------KGNKHWIIKNSWGENWGNKGY--ILMARNKNNACGIANLAS 211
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+
Length = 218
Score = 150 bits (378), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 123/230 (53%), Gaps = 24/230 (10%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
LP+ DWR GAV +K QG CG CW+FSA +EG + + TG L+SLSEQ+L+DC
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQ 60
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFD-KSKIAAAVSN 255
+ GCNGG + F++I+ GG+ E++YPYT D G C D +++ +
Sbjct: 61 NTR-------GCNGGYITDGFQFIINNGGINTEENYPYTAQD-GECNVDLQNEKYVTIDT 112
Query: 256 FSVISSDEDQMAANLVKHGPLAVGINA---VWMQTYIGGVSCPYICGKYLDHGVLIVGYG 312
+ + + + V + P++V ++A + Q G + P CG +DH V IVGYG
Sbjct: 113 YENVPYNNEWALQTAVTYQPVSVALDAAGDAFKQYSSGIFTGP--CGTAIDHAVTIVGYG 170
Query: 313 SSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICM---GRNVCGVDSMVS 359
+ G YWI+KNSW WGE GY +I G CG+ +M S
Sbjct: 171 TEGGI-------DYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGIATMPS 213
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor
Length = 215
Score = 149 bits (375), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 94/229 (41%), Positives = 124/229 (54%), Gaps = 26/229 (11%)
Query: 138 PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECD 197
P D+R G VT VK+QG CGSCW+FS+ GALEG TG+L++LS Q LVDC E D
Sbjct: 2 PDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 61
Query: 198 PEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFS 257
GC GG M +AF+Y+ + G++ E YPY G D SC ++ + AA +
Sbjct: 62 ---------GCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQD-ESCMYNPTGKAAKCRGYR 111
Query: 258 VI-SSDEDQMAANLVKHGPLAVGINA--VWMQTYIGGVSCPYICGK-YLDHGVLIVGYGS 313
I +E + + + GP++V I+A Q Y GV C L+H VL VGYG
Sbjct: 112 EIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDENCSSDNLNHAVLAVGYGI 171
Query: 314 SGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR---NVCGVDSMVS 359
K +WIIKNSWGE+WG GY I M R N CG+ ++ S
Sbjct: 172 Q-------KGNKHWIIKNSWGESWGNKGY--ILMARNKNNACGIANLAS 211
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
Ketoamide Warhead
Length = 213
Score = 147 bits (372), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 94/225 (41%), Positives = 123/225 (54%), Gaps = 26/225 (11%)
Query: 142 DWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEES 201
D+R G VT VK+QG CGSCW+FS+ GALEG TG+L++LS Q LVDC E D
Sbjct: 4 DYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND---- 59
Query: 202 GSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVI-S 260
GC GG M +AF+Y+ K G++ E YPY G + SC ++ + AA + I
Sbjct: 60 -----GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQE-ESCMYNPTGKAAKCRGYREIPE 113
Query: 261 SDEDQMAANLVKHGPLAVGINA--VWMQTYIGGVSCPYICGK-YLDHGVLIVGYGSSGFA 317
+E + + + GP++V I+A Q Y GV C L+H VL VGYG
Sbjct: 114 GNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQ--- 170
Query: 318 PIRFKEKPYWIIKNSWGENWGENGYYKICMGR---NVCGVDSMVS 359
K +WIIKNSWGENWG GY I M R N CG+ ++ S
Sbjct: 171 ----KGNKHWIIKNSWGENWGNKGY--ILMARNKNNACGIANLAS 209
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
pdb|2B1N|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
Length = 246
Score = 145 bits (367), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 96/243 (39%), Positives = 129/243 (53%), Gaps = 42/243 (17%)
Query: 136 DLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHE 195
D P +DW G +T VK QG CGS W+FSATGA+E AH ++TG LVSLSEQ+L+DC E
Sbjct: 1 DAPESWDWSKKGVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDCVDE 60
Query: 196 CDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSN 255
+ GC G +FE+++K GG+ E DYPY D G CK ++ + + N
Sbjct: 61 SE---------GCYNGWHYQSFEWVVKHGGIASEADYPYKARD-GKCKANEIQDKVTIDN 110
Query: 256 FSV-------ISSDEDQMAANLVKHGPLAVGINAVWMQTYIGGV------SCPYICGKYL 302
+ V S+ + + V P++V I+A Y GG+ S PY +
Sbjct: 111 YGVQILSNESTESEAESSLQSFVLEQPISVSIDAKDFHFYSGGIYDGGNCSSPY----GI 166
Query: 303 DHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRN------VCGVDS 356
+H VLIVGYGS YWI KNSWGE+WG +GY +I RN VCG++
Sbjct: 167 NHFVLIVGYGSE-------DGVDYWIAKNSWGEDWGIDGYIRI--QRNTGNLLGVCGMNY 217
Query: 357 MVS 359
S
Sbjct: 218 FAS 220
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
Length = 209
Score = 145 bits (366), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 89/226 (39%), Positives = 123/226 (54%), Gaps = 30/226 (13%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
LP DWR GAV +K+QG CGSCW+FS +E + + TG L+SLSEQQLVDC +
Sbjct: 1 LPEHVDWRAKGAVIPLKNQGKCGSCWAFSTVTTVESINQIRTGNLISLSEQQLVDCSKK- 59
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNF 256
+ GC GG + A++YI+ GG++ E +YPY G C+ K K+
Sbjct: 60 --------NHGCKGGYFDRAYQYIIANGGIDTEANYPYKAFQ-GPCRAAK-KVVRIDGCK 109
Query: 257 SVISSDEDQMAANLVKHGPLAVGINAV--WMQTYIGGV-SCPYICGKYLDHGVLIVGYGS 313
V +E+ + N V P V I+A Q Y GG+ + P CG L+HGV+IVGYG
Sbjct: 110 GVPQCNENAL-KNAVASQPSVVAIDASSKQFQHYKGGIFTGP--CGTKLNHGVVIVGYG- 165
Query: 314 SGFAPIRFKEKPYWIIKNSWGENWGENGYYKI--CMGRNVCGVDSM 357
K YWI++NSWG +WGE GY ++ G +CG+ +
Sbjct: 166 ----------KDYWIVRNSWGRHWGEQGYTRMKRVGGCGLCGIARL 201
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor
Bound To Cathepsin K
Length = 215
Score = 145 bits (365), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 94/229 (41%), Positives = 125/229 (54%), Gaps = 26/229 (11%)
Query: 138 PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECD 197
P D+R G VT VK+QG CGSCW+FS+ GALEG +TG L++L+ Q LVDC E D
Sbjct: 2 PDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKATGALLNLAPQNLVDCVSEND 61
Query: 198 PEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFS 257
GC GG M +AF+Y+ + G++ E YPY G D SC ++ + AA +
Sbjct: 62 ---------GCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQD-ESCMYNPTGKAAKCRGYR 111
Query: 258 VI-SSDEDQMAANLVKHGPLAVGINA--VWMQTYIGGVSCPYICGK-YLDHGVLIVGYGS 313
I +E + + GP++V I+A Q Y GV C L+H VL VGYG
Sbjct: 112 EIPEGNEAALKRAVAAVGPVSVAIDASLTSFQFYSAGVYYDENCSSDALNHAVLAVGYG- 170
Query: 314 SGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR---NVCGVDSMVS 359
I+ K +WIIKNSWGE+WG GY I M R N CG+ ++ S
Sbjct: 171 -----IQAGNK-HWIIKNSWGESWGNAGY--ILMARNKNNACGIANLAS 211
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PNS|B Chain B, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PRE|A Chain A, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
pdb|2PRE|B Chain B, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
Length = 208
Score = 143 bits (361), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 86/226 (38%), Positives = 118/226 (52%), Gaps = 30/226 (13%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
LP DWR GAVT VK+QG CGSCW+FS +E + + TG L+SLSEQQLVDC+ +
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGKCGSCWAFSTVSTVESINQIRTGNLISLSEQQLVDCNKK- 59
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNF 256
+ GC GG A++YI+ GG++ E +YPY G C+ +K + +
Sbjct: 60 --------NHGCKGGAFVYAYQYIIDNGGIDTEANYPYKAVQ-GPCR--AAKKVVRIDGY 108
Query: 257 SVISSDEDQMAANLVKHGPLAVGINAV--WMQTYIGGV-SCPYICGKYLDHGVLIVGYGS 313
+ + V P V I+A Q Y G+ S P CG L+HGV+IVGY
Sbjct: 109 KGVPHCNENALKKAVASQPSVVAIDASSKQFQHYKSGIFSGP--CGTKLNHGVVIVGY-- 164
Query: 314 SGFAPIRFKEKPYWIIKNSWGENWGENGYYKI--CMGRNVCGVDSM 357
K YWI++NSWG WGE GY ++ G +CG+ +
Sbjct: 165 ---------WKDYWIVRNSWGRYWGEQGYIRMKRVGGCGLCGIARL 201
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin
At 1.7 Angstroms Resolution By Fast Fourier
Least-Squares Methods
Length = 220
Score = 143 bits (361), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 122/229 (53%), Gaps = 22/229 (9%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
LP+ DWR GAV +K QG CG W+FSA +EG + +++G L+SLSEQ+L+DC
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGXWAFSAIATVEGINKITSGSLISLSEQELIDCGRTQ 60
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNF 256
+ GC+GG + F++I+ GG+ E++YPYT DG + + + +
Sbjct: 61 NTR-------GCDGGYITDGFQFIINDGGINTEENYPYTAQDGDCDVALQDQKYVTIDTY 113
Query: 257 SVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGV-SCPYICGKYLDHGVLIVGYGS 313
+ + + V + P++V ++A + Y G+ + P CG +DH ++IVGYG+
Sbjct: 114 ENVPYNNEWALQTAVTYQPVSVALDAAGDAFKQYASGIFTGP--CGTAVDHAIVIVGYGT 171
Query: 314 SGFAPIRFKEKPYWIIKNSWGENWGENGYYKICM---GRNVCGVDSMVS 359
G YWI+KNSW WGE GY +I G CG+ +M S
Sbjct: 172 EGGV-------DYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGIATMPS 213
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
pdb|1O0E|B Chain B, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
Length = 208
Score = 142 bits (358), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 82/224 (36%), Positives = 119/224 (53%), Gaps = 26/224 (11%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
LP DWR GAVT VK+QG+CGSCW+FS +E + + TG L+SLSEQ+LVDCD +
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDKK- 59
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNF 256
+ GC GG A++YI+ GG++ + +YPY G C+ ++ N
Sbjct: 60 --------NHGCLGGAFVFAYQYIINNGGIDTQANYPYKAVQ-GPCQAASKVVSIDGYNG 110
Query: 257 SVISSDEDQMAANLVKHGPLAVGINAVWMQTYIGGV-SCPYICGKYLDHGVLIVGYGSSG 315
++ A V+ +A+ ++ Q Y G+ S P CG L+HGV IVGY
Sbjct: 111 VPFCNEXALKQAVAVQPSTVAIDASSAQFQQYSSGIFSGP--CGTKLNHGVTIVGY---- 164
Query: 316 FAPIRFKEKPYWIIKNSWGENWGENGYYKICM--GRNVCGVDSM 357
+ YWI++NSWG WGE GY ++ G +CG+ +
Sbjct: 165 -------QANYWIVRNSWGRYWGEKGYIRMLRVGGCGLCGIARL 201
>pdb|1PCI|A Chain A, Procaricain
pdb|1PCI|B Chain B, Procaricain
pdb|1PCI|C Chain C, Procaricain
Length = 322
Score = 138 bits (348), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 105/312 (33%), Positives = 147/312 (47%), Gaps = 28/312 (8%)
Query: 42 SEDHLLNAEHHFSLFKS---KFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGV 98
S+D L + E LF S +K Y +E YRF +FK NL + + G+
Sbjct: 8 SQDDLTSTERLIQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKKNNSYWLGL 67
Query: 99 TKFSDLTPSEFRRQFLG--LNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQG 156
+F+DL+ EF +++G ++ + D + N LP + DWR GAVT V+ QG
Sbjct: 68 NEFADLSNDEFNEKYVGSLIDATIEQSYDEEFINEDIVN-LPENVDWRKKGAVTPVRHQG 126
Query: 157 ACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSA 216
+CGSCW+FSA +EG + + TG+LV LSEQ+LVDC+ GC GG A
Sbjct: 127 SCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERR---------SHGCKGGYPPYA 177
Query: 217 FEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPL 276
EY+ K G+ YPY G S + + + N + P+
Sbjct: 178 LEYVAK-NGIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAKQPV 236
Query: 277 AVGINAVW--MQTYIGGV-SCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSW 333
+V + + Q Y GG+ P CG +D V VGYG S K Y +IKNSW
Sbjct: 237 SVVVESKGRPFQLYKGGIFEGP--CGTKVDGAVTAVGYGKS-------GGKGYILIKNSW 287
Query: 334 GENWGENGYYKI 345
G WGE GY +I
Sbjct: 288 GTAWGEKGYIRI 299
>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|C Chain C, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
Length = 175
Score = 138 bits (348), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 79/178 (44%), Positives = 105/178 (58%), Gaps = 11/178 (6%)
Query: 138 PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECD 197
P DWR+ G VT VK+QG CGSCW+FSATGALEG F TG L+SLSEQ LVDC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCS---G 58
Query: 198 PEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFS 257
P+ + GCNGGLM+ AF+Y+ GG++ E+ YPY T+ SCK++ A + F
Sbjct: 59 PQG----NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATE-ESCKYNPKYSVANDTGFV 113
Query: 258 VISSDEDQMAANLVKHGPLAVGINA---VWMQTYIGGVSCPYICGKYLDHGVLIVGYG 312
I E + + GP++V I+A ++ G P + +DHGVL+VGYG
Sbjct: 114 DIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYG 171
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2
pdb|2GHU|A Chain A, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|B Chain B, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|C Chain C, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|D Chain D, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2OUL|A Chain A, The Structure Of Chagasin In Complex With A Cysteine
Protease Clarifies The Binding Mode And Evolution Of A
New Inhibitor Family
pdb|3BPF|A Chain A, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|B Chain B, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|C Chain C, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|D Chain D, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
Length = 241
Score = 137 bits (346), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 119/213 (55%), Gaps = 24/213 (11%)
Query: 141 FDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEE 200
+DWR H VT VKDQ CGSCW+FS+ G++E + + +L++LSEQ+LVDC +
Sbjct: 22 YDWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFK----- 76
Query: 201 SGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVIS 260
+ GCNGGL+N+AFE +++ GG+ + DYPY C D+ + N+ +S
Sbjct: 77 ----NYGCNGGLINNAFEDMIELGGICPDGDYPYVSDAPNLCNIDRCTEKYGIKNY--LS 130
Query: 261 SDEDQMAANLVKHGPLAVGIN-----AVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSG 315
++++ L GP+++ + A + + G CG L+H V++VG+G
Sbjct: 131 VPDNKLKEALRFLGPISISVAVSDDFAFYKEGIFDGE-----CGDQLNHAVMLVGFGMKE 185
Query: 316 FA-PIRFKEKP--YWIIKNSWGENWGENGYYKI 345
P+ K + Y+IIKNSWG+ WGE G+ I
Sbjct: 186 IVNPLTKKGEKHYYYIIKNSWGQQWGERGFINI 218
>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|B Chain B, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 175
Score = 134 bits (338), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 77/178 (43%), Positives = 102/178 (57%), Gaps = 11/178 (6%)
Query: 138 PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECD 197
P DWR+ G VT VK+QG CGS W+FSATGALEG F TG L+SLSEQ LVDC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP-- 59
Query: 198 PEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFS 257
+ GCNGGLM+ AF+Y+ GG++ E+ YPY T+ SCK++ A + F
Sbjct: 60 -----QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATE-ESCKYNPKYSVANDTGFV 113
Query: 258 VISSDEDQMAANLVKHGPLAVGINA---VWMQTYIGGVSCPYICGKYLDHGVLIVGYG 312
I E + + GP++V I+A ++ G P + +DHGVL+VGYG
Sbjct: 114 DIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYG 171
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana
pdb|2BDZ|B Chain B, Mexicain From Jacaratia Mexicana
pdb|2BDZ|C Chain C, Mexicain From Jacaratia Mexicana
pdb|2BDZ|D Chain D, Mexicain From Jacaratia Mexicana
Length = 214
Score = 134 bits (338), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 118/224 (52%), Gaps = 30/224 (13%)
Query: 138 PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECD 197
P DWR+ GAVT VK+Q CGSCW+FS +EG + + TG+L+SLSEQ+L+DC+
Sbjct: 2 PESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCERR-- 59
Query: 198 PEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFS 257
GC+GG ++ +Y++ GV E++YPY G DK ++ +
Sbjct: 60 -------SHGCDGGYQTTSLQYVVD-NGVHTEREYPYEKKQGRCRAKDKKGPKVYITGYK 111
Query: 258 VISSDEDQMAANLVKHGPLAVGINA--VWMQTYIGGV-SCPYICGKYLDHGVLIVGYGSS 314
+ ++++ + + P++V ++ Q Y GG+ P CG DH V VGYG
Sbjct: 112 YVPANDEISLIQAIANQPVSVVTDSRGRGFQFYKGGIYEGP--CGTNTDHAVTAVGYG-- 167
Query: 315 GFAPIRFKEKPYWIIKNSWGENWGENGYYKI--CMGRN--VCGV 354
K Y ++KNSWG NWGE GY +I GR+ CGV
Sbjct: 168 ---------KTYLLLKNSWGPNWGEKGYIRIKRASGRSKGTCGV 202
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2
Length = 240
Score = 134 bits (336), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 118/213 (55%), Gaps = 24/213 (11%)
Query: 141 FDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEE 200
+DWR H VT VKDQ CGS W+FS+ G++E + + +L++LSEQ+LVDC +
Sbjct: 21 YDWRLHSGVTPVKDQKNCGSAWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFK----- 75
Query: 201 SGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVIS 260
+ GCNGGL+N+AFE +++ GG+ + DYPY C D+ + N+ +S
Sbjct: 76 ----NYGCNGGLINNAFEDMIELGGICPDGDYPYVSDAPNLCNIDRCTEKYGIKNY--LS 129
Query: 261 SDEDQMAANLVKHGPLAVGIN-----AVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSG 315
++++ L GP+++ + A + + G CG L+H V++VG+G
Sbjct: 130 VPDNKLKEALRFLGPISISVAVSDDFAFYKEGIFDGE-----CGDQLNHAVMLVGFGMKE 184
Query: 316 FA-PIRFKEKP--YWIIKNSWGENWGENGYYKI 345
P+ K + Y+IIKNSWG+ WGE G+ I
Sbjct: 185 IVNPLTKKGEKHYYYIIKNSWGQQWGERGFINI 217
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/211 (38%), Positives = 106/211 (50%), Gaps = 22/211 (10%)
Query: 138 PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECD 197
P DWR GAVT VK+QGACGS W+FS +EG + + TG L+ LSEQ+LVDCD
Sbjct: 2 PQSIDWRAKGAVTPVKNQGACGSXWAFSTIATVEGINKIVTGNLLELSEQELVDCDKH-- 59
Query: 198 PEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFS 257
GC GG ++ +Y+ GV K YPY DK ++ +
Sbjct: 60 -------SYGCKGGYQTTSLQYVAN-NGVHTSKVYPYQAKQYKCRATDKPGPKVKITGYK 111
Query: 258 VISSDEDQMAANLVKHGPLAVGINA--VWMQTYIGGV-SCPYICGKYLDHGVLIVGYGSS 314
+ S+ + + + PL+V + A Q Y GV P CG LDH V VGYG+S
Sbjct: 112 RVPSNXETSFLGALANQPLSVLVEAGGKPFQLYKSGVFDGP--CGTKLDHAVTAVGYGTS 169
Query: 315 GFAPIRFKEKPYWIIKNSWGENWGENGYYKI 345
K Y IIKNSWG NWGE GY ++
Sbjct: 170 -------DGKNYIIIKNSWGPNWGEKGYMRL 193
>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BPM|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BWK|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|C Chain C, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|D Chain D, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
Length = 243
Score = 125 bits (314), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 114/223 (51%), Gaps = 22/223 (9%)
Query: 123 PADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELV 182
PADA+ I +DWR HG VT VKDQ CGSCW+FS+ G++E + + L
Sbjct: 14 PADAKLDRIA--------YDWRLHGGVTPVKDQALCGSCWAFSSVGSVESQYAIRKKALF 65
Query: 183 SLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSC 242
SEQ+LVDC + ++GC GG + +AF+ ++ GG+ + DYPY +C
Sbjct: 66 LFSEQELVDCSVK---------NNGCYGGYITNAFDDMIDLGGLCSQDDYPYVSNLPETC 116
Query: 243 KFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVWMQTYIGGVSCPYICGKYL 302
+ + ++ +S +D+ L GP+++ I A + G CG
Sbjct: 117 NLKRCNERYTIKSY--VSIPDDKFKEALRYLGPISISIAASDDFAFYRGGFYDGECGAAP 174
Query: 303 DHGVLIVGYGSSGFA---PIRFKEKPYWIIKNSWGENWGENGY 342
+H V++VGYG R ++ Y+IIKNSWG +WGE GY
Sbjct: 175 NHAVILVGYGMKDIYNEDTGRMEKFYYYIIKNSWGSDWGEGGY 217
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex
pdb|1KHQ|A Chain A, Orthorhombic Form Of PapainZLFG-Dam Covalent Complex
pdb|1PPN|A Chain A, Structure Of Monoclinic Papain At 1.60 Angstroms
Resolution
pdb|3E1Z|B Chain B, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 212
Score = 122 bits (305), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 107/224 (47%), Gaps = 28/224 (12%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
+P DWR GAVT VK+QG+CGSCW+FSA +EG + TG L SEQ+L+DCD
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRR- 59
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNF 256
GCNGG SA + + + G+ YPY G +K AA
Sbjct: 60 --------SYGCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGV 110
Query: 257 SVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGVSCPYICGKYLDHGVLIVGYGSS 314
+ + + + P++V + A Q Y GG+ CG +DH V VGYG +
Sbjct: 111 RQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVG-PCGNKVDHAVAAVGYGPN 169
Query: 315 GFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR----NVCGV 354
Y +IKNSWG WGENGY +I G VCG+
Sbjct: 170 -----------YILIKNSWGTGWGENGYIRIKRGTGNSYGVCGL 202
>pdb|1PIP|A Chain A, Crystal Structure Of
Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide
Complex At 1.7 Angstroms Resolution: Noncovalent Binding
Mode Of A Common Sequence Of Endogenous Thiol Protease
Inhibitors
pdb|1POP|A Chain A, X-Ray Crystallographic Structure Of A Papain-Leupeptin
Complex
pdb|1CVZ|A Chain A, Crystal Structure Analysis Of Papain With
Clik148(Cathepsin L Specific Inhibitor)
pdb|1BP4|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1BQI|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1PE6|A Chain A, Refined X-Ray Structure Of Papain(Dot)e-64-C Complex At
2.1-Angstroms Resolution
pdb|1PPD|A Chain A, Restrained Least-Squares Refinement Of The Sulfhydryl
Protease Papain To 2.0 Angstroms
pdb|2PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|4PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|6PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|1PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|5PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
Length = 212
Score = 122 bits (305), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 106/224 (47%), Gaps = 28/224 (12%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
+P DWR GAVT VK+QG+CGSCW+FSA +EG + TG L SEQ+L+DCD
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRR- 59
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNF 256
GCNGG SA + + + G+ YPY G +K AA
Sbjct: 60 --------SYGCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGV 110
Query: 257 SVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGVSCPYICGKYLDHGVLIVGYGSS 314
+ + + P++V + A Q Y GG+ CG +DH V VGYG +
Sbjct: 111 RQVQPYNQGALLYSIANQPVSVVLQAAGKDFQLYRGGIFVG-PCGNKVDHAVAAVGYGPN 169
Query: 315 GFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR----NVCGV 354
Y +IKNSWG WGENGY +I G VCG+
Sbjct: 170 -----------YILIKNSWGTGWGENGYIRIKRGTGNSYGVCGL 202
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding
Diversity Of E64-C To Papain S2 And S3 Subsites
Length = 212
Score = 120 bits (302), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 81/223 (36%), Positives = 105/223 (47%), Gaps = 28/223 (12%)
Query: 138 PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECD 197
P DWR GAVT VK+QG+CGSCW+FSA +EG + TG L SEQ+L+DCD
Sbjct: 2 PEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRR-- 59
Query: 198 PEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFS 257
GCNGG SA + + + G+ YPY G +K AA
Sbjct: 60 -------SYGCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVR 111
Query: 258 VISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGVSCPYICGKYLDHGVLIVGYGSSG 315
+ + + P++V + A Q Y GG+ CG +DH V VGYG +
Sbjct: 112 QVQPYNQGALLYSIANQPVSVVLQAAGKDFQLYRGGIFVG-PCGNKVDHAVAAVGYGPN- 169
Query: 316 FAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR----NVCGV 354
Y +IKNSWG WGENGY +I G VCG+
Sbjct: 170 ----------YILIKNSWGTGWGENGYIRIKRGTGNSYGVCGL 202
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
C
Length = 441
Score = 118 bits (296), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 96/330 (29%), Positives = 151/330 (45%), Gaps = 59/330 (17%)
Query: 66 TQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLP-- 123
+QE++ R + N +A TA ++ LT + R+ G +R++ P
Sbjct: 135 SQEKYSNRLYKYDHNFVKAINAIQKSWTAT-TYMEYETLTLGDMIRRSGGHSRKIPRPKP 193
Query: 124 ----ADAQKAPILPTNDLPTDFDWRD-HGA--VTGVKDQGACGSCWSFSATGALEGAHFL 176
A+ Q+ + LPT +DWR+ HG V+ V++Q +CGSC+SF++ G LE +
Sbjct: 194 APLTAEIQQKILF----LPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRI 249
Query: 177 STG--ELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAG-----GVERE 229
T + LS Q++V C GC GG F Y++ G+ E
Sbjct: 250 LTNNSQTPILSPQEVVSCSQYAQ---------GCEGG-----FPYLIAGKYAQDFGLVEE 295
Query: 230 KDYPYTGTDGGSCKFDKSKIAAAVSNFSVISS-----DEDQMAANLVKHGPLAVGINA-- 282
+PYTGTD CK + S + + +E M LV HGP+AV
Sbjct: 296 ACFPYTGTDS-PCKMKEDCFRYYSSEYHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYD 354
Query: 283 --------VWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWG 334
++ T G+ P+ + +H VL+VGYG+ + + YWI+KNSWG
Sbjct: 355 DFLHYKKGIYHHT---GLRDPFNPFELTNHAVLLVGYGTDSASGMD-----YWIVKNSWG 406
Query: 335 ENWGENGYYKICMGRNVCGVDSMVSSVAAI 364
WGENGY++I G + C ++S+ + I
Sbjct: 407 TGWGENGYFRIRRGTDECAIESIAVAATPI 436
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed
With Fragments Of The Trypanosoma Brucei Cysteine
Protease Inhibitor Icp
Length = 212
Score = 118 bits (296), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 106/224 (47%), Gaps = 28/224 (12%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
+P DWR GAVT VK+QG+CGS W+FSA +EG + TG L SEQ+L+DCD
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRR- 59
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNF 256
GCNGG SA + + + G+ YPY G +K AA
Sbjct: 60 --------SYGCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGV 110
Query: 257 SVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGVSCPYICGKYLDHGVLIVGYGSS 314
+ + + + P++V + A Q Y GG+ CG +DH V VGYG +
Sbjct: 111 RQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVG-PCGNKVDHAVAAVGYGPN 169
Query: 315 GFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR----NVCGV 354
Y +IKNSWG WGENGY +I G VCG+
Sbjct: 170 -----------YILIKNSWGTGWGENGYIRIKRGTGNSYGVCGL 202
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|C Chain C, Complex Strcuture Of Tarocystatin And Papain
pdb|3LFY|A Chain A, Ctd Of Tarocystatin In Complex With Papain
pdb|3LFY|C Chain C, Ctd Of Tarocystatin In Complex With Papain
Length = 212
Score = 118 bits (296), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 106/224 (47%), Gaps = 28/224 (12%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
+P DWR GAVT VK+QG+CGS W+FSA +EG + TG L SEQ+L+DCD
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRR- 59
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNF 256
GCNGG SA + + + G+ YPY G +K AA
Sbjct: 60 --------SYGCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGV 110
Query: 257 SVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGVSCPYICGKYLDHGVLIVGYGSS 314
+ + + + P++V + A Q Y GG+ CG +DH V VGYG +
Sbjct: 111 RQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVG-PCGNKVDHAVAAVGYGPN 169
Query: 315 GFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR----NVCGV 354
Y +IKNSWG WGENGY +I G VCG+
Sbjct: 170 -----------YILIKNSWGTGWGENGYIRIKRGTGNSYGVCGL 202
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of
Recombinant Human Stefin B In Complex With The Cysteine
Proteinase Papain: A Novel Type Of Proteinase Inhibitor
Interaction
pdb|9PAP|A Chain A, Structure Of Papain Refined At 1.65 Angstroms Resolution
Length = 212
Score = 118 bits (295), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 105/224 (46%), Gaps = 28/224 (12%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
+P DWR GAVT VK+QG+CGS W+FSA +EG + TG L SEQ+L+DCD
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRR- 59
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNF 256
GCNGG SA + + + G+ YPY G +K AA
Sbjct: 60 --------SYGCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGV 110
Query: 257 SVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGVSCPYICGKYLDHGVLIVGYGSS 314
+ + + P++V + A Q Y GG+ CG +DH V VGYG +
Sbjct: 111 RQVQPYNQGALLYSIANQPVSVVLQAAGKDFQLYRGGIFVG-PCGNKVDHAVAAVGYGPN 169
Query: 315 GFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR----NVCGV 354
Y +IKNSWG WGENGY +I G VCG+
Sbjct: 170 -----------YILIKNSWGTGWGENGYIRIKRGTGNSYGVCGL 202
>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega
Length = 216
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 108/213 (50%), Gaps = 24/213 (11%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
LP + DWR GAVT V+ QG+CGSCW+FSA +EG + + TG+LV LSEQ+LVDC+
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERR- 59
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDK-SKIAAAVSN 255
GC GG A EY+ K G+ YPY G+C+ + S
Sbjct: 60 --------SHGCKGGYPPYALEYVAK-NGIHLRSKYPYKAKQ-GTCRAKQVGGPIVKTSG 109
Query: 256 FSVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGV-SCPYICGKYLDHGVLIVGYG 312
+ + + N + P++V + + Q Y GG+ P CG +DH V VGYG
Sbjct: 110 VGRVQPNNEGNLLNAIAKQPVSVVVESKGRPFQLYKGGIFEGP--CGTKVDHAVTAVGYG 167
Query: 313 SSGFAPIRFKEKPYWIIKNSWGENWGENGYYKI 345
S K Y +IKNSWG WGE GY +I
Sbjct: 168 KS-------GGKGYILIKNSWGTAWGEKGYIRI 193
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With
Benzyloxycarbonyl-leucine-valine- Glycine-methylene
Covalently Bound To Cysteine 25
Length = 216
Score = 115 bits (288), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 110/225 (48%), Gaps = 26/225 (11%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
LP DWR GAVT VK QG C SCW+FS +EG + + TG LV LSEQ+LVDCD +
Sbjct: 1 LPESVDWRAKGAVTPVKHQGYCESCWAFSTVATVEGINKIKTGNLVELSEQELVDCDLQ- 59
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSN- 255
GCN G +++ +Y+ + G+ YPY +C+ ++ +N
Sbjct: 60 --------SYGCNRGYQSTSLQYVAQ-NGIHLRAKYPYIAKQ-QTCRANQVGGPKVKTNG 109
Query: 256 FSVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGVSCPYICGKYLDHGVLIVGYGS 313
+ S+ + N + H P++V + + Q Y GG+ CG +DH V V
Sbjct: 110 VGRVQSNNEGSLLNAIAHQPVSVVVESAGRDFQNYKGGIF-EGSCGTKVDHAVTAV---- 164
Query: 314 SGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR----NVCGV 354
+ K Y +IKNSWG WGENGY +I VCGV
Sbjct: 165 ---GYGKSGGKGYILIKNSWGPGWGENGYIRIRRASGNSPGVCGV 206
>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex
With E-64
Length = 216
Score = 115 bits (287), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 80/213 (37%), Positives = 108/213 (50%), Gaps = 24/213 (11%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
LP + DWR GAVT V+ QG+CGSCW+FSA +EG + + TG+LV LSEQ+LVDC+
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERR- 59
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDK-SKIAAAVSN 255
GC GG A EY+ K G+ YPY G+C+ + S
Sbjct: 60 --------SHGCKGGYPPYALEYVAK-NGIHLRSKYPYKAKQ-GTCRAKQVGGPIVKTSG 109
Query: 256 FSVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGV-SCPYICGKYLDHGVLIVGYG 312
+ + + N + P++V + + Q Y GG+ P CG ++H V VGYG
Sbjct: 110 VGRVQPNNEGNLLNAIAKQPVSVVVESKGRPFQLYKGGIFEGP--CGTKVEHAVTAVGYG 167
Query: 313 SSGFAPIRFKEKPYWIIKNSWGENWGENGYYKI 345
S K Y +IKNSWG WGE GY +I
Sbjct: 168 KS-------GGKGYILIKNSWGTAWGEKGYIRI 193
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine
Protease Cms1ms2 In Complex With E-64
Length = 213
Score = 111 bits (278), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 119/228 (52%), Gaps = 32/228 (14%)
Query: 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHEC 196
+PT DWR GAVT V++QG CGSCW+FS+ A+EG + + TG+L+SLSEQ+L+DC+
Sbjct: 1 IPTSIDWRQKGAVTPVRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCERR- 59
Query: 197 DPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSN- 255
GC GG A +Y+ + G+ + YPY G C+ ++K ++
Sbjct: 60 --------SYGCRGGFPLYALQYVANS-GIHLRQYYPYEGVQ-RQCRASQAKGPKVKTDG 109
Query: 256 FSVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGV-SCPYICGKYLDHGVLIVGYG 312
+ + +Q + P+++ + A Q Y GG+ + P CG +DH V VGYG
Sbjct: 110 VGRVPRNNEQALIQRIAIQPVSIVVEAKGRAFQNYRGGIFAGP--CGTSIDHAVAAVGYG 167
Query: 313 SSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMG----RNVCGVDS 356
+ Y +IKNSWG WGE GY +I G + CGV S
Sbjct: 168 ND-----------YILIKNSWGTGWGEGGYIRIKRGSGNPQGACGVLS 204
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric
Cysteine Protease Of The Papain Family
Length = 438
Score = 107 bits (268), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 79/250 (31%), Positives = 123/250 (49%), Gaps = 42/250 (16%)
Query: 137 LPTDFDWRD---HGAVTGVKDQGACGSCWSFSATGALEGAHFLSTG--ELVSLSEQQLVD 191
LP +DWR+ V+ V++Q +CGSC+SF++ G LE + T + LS Q++V
Sbjct: 206 LPESWDWRNVRGINFVSPVRNQESCGSCYSFASLGMLEARIRILTNNSQTPILSPQEVVS 265
Query: 192 CDHECDPEESGSCDSGCNGGLMNSAFEYILKAG-----GVEREKDYPYTGTDGGSCKFDK 246
C GC+GG F Y++ GV E +PYT TD CK +
Sbjct: 266 CS---------PYAQGCDGG-----FPYLIAGKYAQDFGVVEENCFPYTATDA-PCKPKE 310
Query: 247 SKIAAAVSNFSVISS-----DEDQMAANLVKHGPLAVG--INAVWMQTYIG-----GVSC 294
+ + S + + +E M LVKHGP+AV ++ ++ + G G+S
Sbjct: 311 NCLRYYSSEYYYVGGFYGGCNEALMKLELVKHGPMAVAFEVHDDFLHYHSGIYHHTGLSD 370
Query: 295 PYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGV 354
P+ + +H VL+VGYG + YWI+KNSWG WGE+GY++I G + C +
Sbjct: 371 PFNPFELTNHAVLLVGYGKDPVTGLD-----YWIVKNSWGSQWGESGYFRIRRGTDECAI 425
Query: 355 DSMVSSVAAI 364
+S+ + I
Sbjct: 426 ESIAMAAIPI 435
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
Der P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 86/308 (27%), Positives = 136/308 (44%), Gaps = 52/308 (16%)
Query: 53 FSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAV-----HGVTKFSDLTPS 107
F +K F+K+YAT E+ + A R+ L+ + SDL+
Sbjct: 8 FEEYKKAFNKSYATFEDEE------------AARKNFLESVKYVQSNGGAINHLSDLSLD 55
Query: 108 EFRRQFL-------GLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGS 160
EF+ +FL L + L A+ I + P + D R VT ++ QG CGS
Sbjct: 56 EFKNRFLMSAEAFEHLKTQFDLNAETNACSI--NGNAPAEIDLRQMRTVTPIRMQGGCGS 113
Query: 161 CWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYI 220
W+FS A E A+ + + L+EQ+LVDC + GC+G + EYI
Sbjct: 114 AWAFSGVAATESAYLAYRDQSLDLAEQELVDC----------ASQHGCHGDTIPRGIEYI 163
Query: 221 LKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNF-SVISSDEDQMAANLVK-HGPLAV 278
+ GV +E Y Y + SC+ ++ +SN+ + + +++ L + H +AV
Sbjct: 164 -QHNGVVQESYYRYVARE-QSCRRPNAQ-RFGISNYCQIYPPNANKIREALAQTHSAIAV 220
Query: 279 --GINAVWMQTYIGGVSCPYICGKYLD--HGVLIVGYGSSGFAPIRFKEKPYWIIKNSWG 334
GI + + G + Y H V IVGY ++ + YWI++NSW
Sbjct: 221 IIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGYSNA-------QGVDYWIVRNSWD 273
Query: 335 ENWGENGY 342
NWG+NGY
Sbjct: 274 TNWGDNGY 281
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 109/226 (48%), Gaps = 26/226 (11%)
Query: 136 DLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHE 195
++P++ D R VT ++ QG CGSCW+FS A E A+ + LSEQ+LVDC
Sbjct: 10 NVPSELDLRSLRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNTSLDLSEQELVDC--- 66
Query: 196 CDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSN 255
+ GC+G + EYI + G VE E+ YPY + C+ S+ +SN
Sbjct: 67 -------ASQHGCHGDTIPRGIEYIQQNGVVE-ERSYPYVARE-QRCRRPNSQ-HYGISN 116
Query: 256 F-SVISSDEDQMAANLVK-HGPLAVGI---NAVWMQTYIGGVSCPYICGKYLD-HGVLIV 309
+ + D Q+ L + H +AV I + Q Y G + G + H V IV
Sbjct: 117 YCQIYPPDVKQIREALTQTHTAIAVIIGIKDLRAFQHYDGRTIIQHDNGYQPNYHAVNIV 176
Query: 310 GYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVD 355
GYGS+ + YWI++NSW WG++GY G N+ ++
Sbjct: 177 GYGST-------QGDDYWIVRNSWDTTWGDSGYGYFQAGNNLMMIE 215
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With Ca074 Inhibitor
pdb|3S3Q|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11017 Inhibitor
pdb|3S3R|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|B Chain B, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|C Chain C, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
Length = 254
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/266 (28%), Positives = 124/266 (46%), Gaps = 58/266 (21%)
Query: 136 DLPTDFD----WRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTG--ELVSLSEQQL 189
++P+ FD W ++ ++DQ CGSCW+F A A+ + +G + V LS L
Sbjct: 2 EIPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVDL 61
Query: 190 VDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAG---GVERE-----KDYPYTGTDG-- 239
+ C C+ SC GC GG++ A++Y +K G G +E + YP+ +
Sbjct: 62 LSC---CE-----SCGLGCEGGILGPAWDYWVKEGIVTGSSKENHAGCEPYPFPKCEHHT 113
Query: 240 -------GSCKFDKSKIAAAV----------------SNFSVISSDEDQMAANLVKHGPL 276
GS + + S+++V +DE + ++K+GP+
Sbjct: 114 KGKYPPCGSKIYKTPRCKQTCQKKYKTPYTQDKHRGKSSYNV-KNDEKAIQKEIMKYGPV 172
Query: 277 AVGINAVW-MQTYIGGVSCPYICGKYLD-HGVLIVGYGSSGFAPIRFKEKPYWIIKNSWG 334
G Y G+ +I G+ L H + I+G+G AP YW+I NSW
Sbjct: 173 EAGFTVYEDFLNYKSGIY-KHITGETLGGHAIRIIGWGVENKAP-------YWLIANSWN 224
Query: 335 ENWGENGYYKICMGRNVCGVDSMVSS 360
E+WGENGY++I GR+ C ++S V++
Sbjct: 225 EDWGENGYFRIVRGRDECSIESEVTA 250
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
pdb|2AS8|B Chain B, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
Length = 222
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 102/213 (47%), Gaps = 26/213 (12%)
Query: 136 DLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHE 195
+ P + D R VT ++ QG CGSCW+FS A E A+ + + L+EQ+LVDC
Sbjct: 9 NAPAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRQQSLDLAEQELVDC--- 65
Query: 196 CDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSN 255
+ GC+G + EYI + GV +E Y Y + SC+ ++ +SN
Sbjct: 66 -------ASQHGCHGDTIPRGIEYI-QHNGVVQESYYRYVARE-QSCRRPNAQ-RFGISN 115
Query: 256 F-SVISSDEDQMAANLVK-HGPLAV--GINAVWMQTYIGGVSCPYICGKYLD--HGVLIV 309
+ + + +++ L + H +AV GI + + G + Y H V IV
Sbjct: 116 YCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIV 175
Query: 310 GYGSSGFAPIRFKEKPYWIIKNSWGENWGENGY 342
GY ++ + YWI++NSW NWG+NGY
Sbjct: 176 GYSNA-------QGVDYWIVRNSWDTNWGDNGY 201
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
pdb|3RVX|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 222
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 102/213 (47%), Gaps = 26/213 (12%)
Query: 136 DLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHE 195
+ P + D R VT ++ QG CGSCW+FS A E A+ + + L+EQ+LVDC
Sbjct: 9 NAPAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNQSLDLAEQELVDC--- 65
Query: 196 CDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSN 255
+ GC+G + EYI + GV +E Y Y + SC+ ++ +SN
Sbjct: 66 -------ASQHGCHGDTIPRGIEYI-QHNGVVQESYYRYVARE-QSCRRPNAQ-RFGISN 115
Query: 256 F-SVISSDEDQMAANLVK-HGPLAV--GINAVWMQTYIGGVSCPYICGKYLD--HGVLIV 309
+ + + +++ L + H +AV GI + + G + Y H V IV
Sbjct: 116 YCQIYPPNVNKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIV 175
Query: 310 GYGSSGFAPIRFKEKPYWIIKNSWGENWGENGY 342
GY ++ + YWI++NSW NWG+NGY
Sbjct: 176 GYSNA-------QGVDYWIVRNSWDTNWGDNGY 201
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1
pdb|3F5V|B Chain B, C2 Crystal Form Of Mite Allergen Der P 1
Length = 222
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 101/213 (47%), Gaps = 26/213 (12%)
Query: 136 DLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHE 195
+ P + D R VT ++ QG CGS W+FS A E A+ + + L+EQ+LVDC
Sbjct: 9 NAPAEIDLRQMRTVTPIRMQGGCGSXWAFSGVAATESAYLAYRQQSLDLAEQELVDC--- 65
Query: 196 CDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSN 255
+ GC+G + EYI + GV +E Y Y + SC+ ++ +SN
Sbjct: 66 -------ASQHGCHGDTIPRGIEYI-QHNGVVQESYYRYVARE-QSCRRPNAQ-RFGISN 115
Query: 256 F-SVISSDEDQMAANLVK-HGPLAV--GINAVWMQTYIGGVSCPYICGKYLD--HGVLIV 309
+ + + +++ L + H +AV GI + + G + Y H V IV
Sbjct: 116 YCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIV 175
Query: 310 GYGSSGFAPIRFKEKPYWIIKNSWGENWGENGY 342
GY ++ + YWI++NSW NWG+NGY
Sbjct: 176 GYSNA-------QGVDYWIVRNSWDTNWGDNGY 201
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At
3.2 Angstrom Resolution
pdb|2PBH|A Chain A, Crystal Structure Of Human Procathepsin B At 3.3 Angstrom
Resolution
pdb|3PBH|A Chain A, Refined Crystal Structure Of Human Procathepsin B At 2.5
Angstrom Resolution
Length = 317
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 80/287 (27%), Positives = 123/287 (42%), Gaps = 62/287 (21%)
Query: 123 PADAQKAPILPTNDLPTDFD----WRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLST 178
P Q+ LP FD W + ++DQG+CGSCW+F A A+ + T
Sbjct: 50 PKPPQRVMFTEDLKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHT 109
Query: 179 GELVSL--SEQQLVDCDHECDPEESGS-CDSGCNGGLMNSAFEYILKAGGVER------- 228
VS+ S + L+ C GS C GCNGG A+ + + G V
Sbjct: 110 NAHVSVEVSAEDLLTC--------CGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHV 161
Query: 229 -----------------------EKDYPYTG--TDGGSCKFDKSKIAAAVSNFSVISSDE 263
E D P + G K +++SV +S++
Sbjct: 162 GCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEK 221
Query: 264 DQMAANLVKHGPLAVGINAVW--MQTYIGGVSCPYICGKYLD-HGVLIVGYGSSGFAPIR 320
D MA + K+GP+ G +V+ Y GV ++ G+ + H + I+G+G
Sbjct: 222 DIMA-EIYKNGPVE-GAFSVYSDFLLYKSGVY-QHVTGEMMGGHAIRILGWGVE------ 272
Query: 321 FKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSSVAAIHTT 367
PYW++ NSW +WG+NG++KI G++ CG++S V VA I T
Sbjct: 273 -NGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEV--VAGIPRT 316
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
pdb|1DEU|B Chain B, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
Length = 277
Score = 81.3 bits (199), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 112/237 (47%), Gaps = 41/237 (17%)
Query: 132 LPTNDLPTDFDWRDHGAV---TGVKDQGA---CGSCWSFSATGAL-EGAHFLSTGELVS- 183
L DLP +DWR+ V + ++Q CGSCW+ ++T A+ + + G S
Sbjct: 31 LSPADLPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPST 90
Query: 184 -LSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSC 242
LS Q ++DC + +GSC+ G + + + A ++ G+ E Y D
Sbjct: 91 LLSVQNVIDCGN------AGSCEGGNDLSVWDYAHQH-----GIPDETCNNYQAKDQECD 139
Query: 243 KFDKS------KIAAAVSNFSVIS-------SDEDQMAANLVKHGPLAVGINAV-WMQTY 288
KF++ K A+ N+++ S ++M A + +GP++ GI A + Y
Sbjct: 140 KFNQCGTCNEFKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATERLANY 199
Query: 289 IGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKI 345
GG+ Y Y++H V + G+G S YWI++NSWGE WGE G+ +I
Sbjct: 200 TGGIYAEYQDTTYINHVVSVAGWGIS-------DGTEYWIVRNSWGEPWGERGWLRI 249
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
pdb|3MOR|B Chain B, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
Length = 317
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 83/303 (27%), Positives = 121/303 (39%), Gaps = 65/303 (21%)
Query: 81 LRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTD 140
LR AKR ++GV K ++ +R+F R LP+ A P + PT
Sbjct: 38 LREAKR--------LNGVIKKNNNASILPKRRFTEEEARAPLPSSFDSAEAWP--NCPT- 86
Query: 141 FDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGEL--VSLSEQQLVDCDHECDP 198
+ + DQ ACGSCW+ +A A+ F + G + V +S L+ C
Sbjct: 87 --------IPQIADQSACGSCWAVAAASAMSD-RFCTMGGVQDVHISAGDLLAC------ 131
Query: 199 EESGSCDSGCNGGLMNSAFEYILKAGGV-EREKDYPYT------------------GTDG 239
C GCNGG + A+ Y G V + + YP+ D
Sbjct: 132 --CSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDT 189
Query: 240 GSCKFDKSKIAAAVSNFSVISS----DEDQMAANLVKHGPLAVGINAVWMQTYIGGVSCP 295
C + V N+ +S ED L GP V + + +I S
Sbjct: 190 PKCNYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDV--YEDFIAYNSGV 247
Query: 296 Y--ICGKYLD-HGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVC 352
Y + G+YL H V +VG+G+S PYW I NSW WG +GY+ I G + C
Sbjct: 248 YHHVSGQYLGGHAVRLVGWGTS-------NGVPYWKIANSWNTEWGMDGYFLIRRGSSEC 300
Query: 353 GVD 355
G++
Sbjct: 301 GIE 303
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs
Free-electron Laser Pulse Data By Serial Femtosecond
X-ray Crystallography
Length = 340
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 83/303 (27%), Positives = 121/303 (39%), Gaps = 65/303 (21%)
Query: 81 LRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTD 140
LR AKR ++GV K ++ +R+F R LP+ A P + PT
Sbjct: 61 LREAKR--------LNGVIKKNNNASILPKRRFTEEEARAPLPSSFDSAEAWP--NCPT- 109
Query: 141 FDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGEL--VSLSEQQLVDCDHECDP 198
+ + DQ ACGSCW+ +A A+ F + G + V +S L+ C
Sbjct: 110 --------IPQIADQSACGSCWAVAAASAMSD-RFCTMGGVQDVHISAGDLLAC------ 154
Query: 199 EESGSCDSGCNGGLMNSAFEYILKAGGV-EREKDYPYT------------------GTDG 239
C GCNGG + A+ Y G V + + YP+ D
Sbjct: 155 --CSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDT 212
Query: 240 GSCKFDKSKIAAAVSNFSVISS----DEDQMAANLVKHGPLAVGINAVWMQTYIGGVSCP 295
C + V N+ +S ED L GP V + + +I S
Sbjct: 213 PKCNYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDV--YEDFIAYNSGV 270
Query: 296 Y--ICGKYLD-HGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVC 352
Y + G+YL H V +VG+G+S PYW I NSW WG +GY+ I G + C
Sbjct: 271 YHHVSGQYLGGHAVRLVGWGTS-------NGVPYWKIANSWNTEWGMDGYFLIRRGSSEC 323
Query: 353 GVD 355
G++
Sbjct: 324 GIE 326
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
pdb|3HHI|B Chain B, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
Length = 325
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 83/303 (27%), Positives = 121/303 (39%), Gaps = 65/303 (21%)
Query: 81 LRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTD 140
LR AKR ++GV K ++ +R+F R LP+ A P + PT
Sbjct: 39 LREAKR--------LNGVIKKNNNASILPKRRFTEEEARAPLPSSFDSAEAWP--NCPT- 87
Query: 141 FDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGEL--VSLSEQQLVDCDHECDP 198
+ + DQ ACGSCW+ +A A+ F + G + V +S L+ C
Sbjct: 88 --------IPQIADQSACGSCWAVAAASAMSD-RFCTMGGVQDVHISAGDLLAC------ 132
Query: 199 EESGSCDSGCNGGLMNSAFEYILKAGGV-EREKDYPYT------------------GTDG 239
C GCNGG + A+ Y G V + + YP+ D
Sbjct: 133 --CSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDT 190
Query: 240 GSCKFDKSKIAAAVSNFSVISS----DEDQMAANLVKHGPLAVGINAVWMQTYIGGVSCP 295
C + V N+ +S ED L GP V + + +I S
Sbjct: 191 PKCDYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDV--YEDFIAYNSGV 248
Query: 296 Y--ICGKYLD-HGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVC 352
Y + G+YL H V +VG+G+S PYW I NSW WG +GY+ I G + C
Sbjct: 249 YHHVSGQYLGGHAVRLVGWGTS-------NGVPYWKIANSWNTEWGMDGYFLIRRGSSEC 301
Query: 353 GVD 355
G++
Sbjct: 302 GIE 304
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 120/271 (44%), Gaps = 56/271 (20%)
Query: 136 DLPTDFD----WRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSL--SEQQL 189
+LP FD W + + ++DQG+CGSCW+F A A+ + T V++ S + L
Sbjct: 6 NLPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDL 65
Query: 190 VDCDHECDPEESGSCDSGCNGGLMNSAFEYI----LKAGGVEREKD--YPYT-------- 235
+ C C + C GCNGG + A+ + L +GGV PYT
Sbjct: 66 LTC---CGIQ----CGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHV 118
Query: 236 -------GTDGGSCKFDKSKIAAAVSNFS----------VISSDEDQMAANLVKHGPLAV 278
+G + K +K A +++ +S E ++ A + K+GP+
Sbjct: 119 NGARPPCTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVE- 177
Query: 279 GINAVW--MQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGEN 336
G V+ TY GV H + I+G+G PYW++ NSW +
Sbjct: 178 GAFTVFSDFLTYKSGVYKHEAGDVMGGHAIRILGWGIE-------NGVPYWLVANSWNAD 230
Query: 337 WGENGYYKICMGRNVCGVDSMVSSVAAIHTT 367
WG+NG++KI G N CG++S + VA I T
Sbjct: 231 WGDNGFFKILRGENHCGIESEI--VAGIPRT 259
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CTE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
Length = 254
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 77/270 (28%), Positives = 119/270 (44%), Gaps = 56/270 (20%)
Query: 137 LPTDFD----WRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSL--SEQQLV 190
LP FD W + + ++DQG+CGSCW+F A A+ + T V++ S + L+
Sbjct: 1 LPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLL 60
Query: 191 DCDHECDPEESGSCDSGCNGGLMNSAFEYI----LKAGGVEREKD--YPYT--------- 235
C C + C GCNGG + A+ + L +GGV PYT
Sbjct: 61 TC---CGIQ----CGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVN 113
Query: 236 ------GTDGGSCKFDKSKIAAAVSNFS----------VISSDEDQMAANLVKHGPLAVG 279
+G + K +K A +++ +S E ++ A + K+GP+ G
Sbjct: 114 GARPPCTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVE-G 172
Query: 280 INAVW--MQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENW 337
V+ TY GV H + I+G+G PYW++ NSW +W
Sbjct: 173 AFTVFSDFLTYKSGVYKHEAGDVMGGHAIRILGWGIE-------NGVPYWLVANSWNADW 225
Query: 338 GENGYYKICMGRNVCGVDSMVSSVAAIHTT 367
G+NG++KI G N CG++S + VA I T
Sbjct: 226 GDNGFFKILRGENHCGIESEI--VAGIPRT 253
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline
pdb|3AI8|A Chain A, Cathepsin B In Complex With The Nitroxoline
Length = 256
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 120/273 (43%), Gaps = 62/273 (22%)
Query: 137 LPTDFD----WRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSL--SEQQLV 190
LP FD W + ++DQG+CGSCW+F A A+ + T VS+ S + L+
Sbjct: 3 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 62
Query: 191 DCDHECDPEESGS-CDSGCNGGLMNSAFEYILKAGGVER--------------------- 228
C GS C GCNGG A+ + + G V
Sbjct: 63 TC--------CGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHV 114
Query: 229 ---------EKDYPYTG--TDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLA 277
E D P + G K +++SV +S++D MA + K+GP+
Sbjct: 115 NGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMA-EIYKNGPVE 173
Query: 278 VGINAVW--MQTYIGGVSCPYICGKYLD-HGVLIVGYGSSGFAPIRFKEKPYWIIKNSWG 334
G +V+ Y GV ++ G+ + H + I+G+G PYW++ NSW
Sbjct: 174 -GAFSVYSDFLLYKSGVY-QHVTGEMMGGHAIRILGWGVE-------NGTPYWLVANSWN 224
Query: 335 ENWGENGYYKICMGRNVCGVDSMVSSVAAIHTT 367
+WG+NG++KI G++ CG++S V VA I T
Sbjct: 225 TDWGDNGFFKILRGQDHCGIESEV--VAGIPRT 255
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|B Chain B, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|C Chain C, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
Length = 261
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 120/273 (43%), Gaps = 62/273 (22%)
Query: 137 LPTDFD----WRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSL--SEQQLV 190
LP FD W + ++DQG+CGSCW+F A A+ + T VS+ S + L+
Sbjct: 2 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 61
Query: 191 DCDHECDPEESGS-CDSGCNGGLMNSAFEYILKAGGVER--------------------- 228
C GS C GCNGG A+ + + G V
Sbjct: 62 TC--------CGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHV 113
Query: 229 ---------EKDYPYTG--TDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLA 277
E D P + G K +++SV +S++D MA + K+GP+
Sbjct: 114 NGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMA-EIYKNGPVE 172
Query: 278 VGINAVW--MQTYIGGVSCPYICGKYLD-HGVLIVGYGSSGFAPIRFKEKPYWIIKNSWG 334
G +V+ Y GV ++ G+ + H + I+G+G PYW++ NSW
Sbjct: 173 -GAFSVYSDFLLYKSGVY-QHVTGEMMGGHAIRILGWGVE-------NGTPYWLVANSWN 223
Query: 335 ENWGENGYYKICMGRNVCGVDSMVSSVAAIHTT 367
+WG+NG++KI G++ CG++S V VA I T
Sbjct: 224 TDWGDNGFFKILRGQDHCGIESEV--VAGIPRT 254
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A
pdb|3K9M|B Chain B, Cathepsin B In Complex With Stefin A
Length = 254
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 120/273 (43%), Gaps = 62/273 (22%)
Query: 137 LPTDFD----WRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSL--SEQQLV 190
LP FD W + ++DQG+CGSCW+F A A+ + T VS+ S + L+
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 60
Query: 191 DCDHECDPEESGS-CDSGCNGGLMNSAFEYILKAGGVER--------------------- 228
C GS C GCNGG A+ + + G V
Sbjct: 61 TC--------CGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHV 112
Query: 229 ---------EKDYPYTG--TDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLA 277
E D P + G K +++SV +S++D MA + K+GP+
Sbjct: 113 NGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMA-EIYKNGPVE 171
Query: 278 VGINAVW--MQTYIGGVSCPYICGKYLD-HGVLIVGYGSSGFAPIRFKEKPYWIIKNSWG 334
G +V+ Y GV ++ G+ + H + I+G+G PYW++ NSW
Sbjct: 172 -GAFSVYSDFLLYKSGVY-QHVTGEMMGGHAIRILGWGVE-------NGTPYWLVANSWN 222
Query: 335 ENWGENGYYKICMGRNVCGVDSMVSSVAAIHTT 367
+WG+NG++KI G++ CG++S V VA I T
Sbjct: 223 TDWGDNGFFKILRGQDHCGIESEV--VAGIPRT 253
>pdb|1MIR|A Chain A, Rat Procathepsin B
pdb|1MIR|B Chain B, Rat Procathepsin B
Length = 322
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 116/270 (42%), Gaps = 54/270 (20%)
Query: 136 DLPTDFD----WRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSL--SEQQL 189
+LP FD W + + ++DQG+CGS W+F A A+ + T V++ S + L
Sbjct: 62 NLPESFDAREQWSNCPTIAQIRDQGSCGSSWAFGAVEAMSDRICIHTNGRVNVEVSAEDL 121
Query: 190 VDCDHECDPEESGSCDSGCNGGLMNSAFEYI----LKAGGVEREKD--YPYT-------- 235
+ C C + C GCNGG + A+ + L +GGV PYT
Sbjct: 122 LTC---CGIQ----CGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHV 174
Query: 236 -------GTDGGSCKFDKSKIAAAVSNFS----------VISSDEDQMAANLVKHGPLAV 278
+G + K +K A +++ +S E ++ A + K+GP+
Sbjct: 175 NGARPPCTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEG 234
Query: 279 GINAVW-MQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENW 337
TY GV H + I+G+G P YW++ NSW +W
Sbjct: 235 AFTVFSDFLTYKSGVYKHEAGDVMGGHAIRILGWGIENGVP-------YWLVANSWNADW 287
Query: 338 GENGYYKICMGRNVCGVDSMVSSVAAIHTT 367
G+NG++KI G N CG++S + VA I T
Sbjct: 288 GDNGFFKILRGENHCGIESEI--VAGIPRT 315
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X
pdb|1EF7|B Chain B, Crystal Structure Of Human Cathepsin X
Length = 242
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 110/232 (47%), Gaps = 41/232 (17%)
Query: 137 LPTDFDWRDHGAV---TGVKDQGA---CGSCWSFSATGAL-EGAHFLSTGELVS--LSEQ 187
LP +DWR+ V + ++Q CGSCW+ ++T A+ + + G S LS Q
Sbjct: 1 LPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQ 60
Query: 188 QLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKS 247
++DC + +GSC+ G + + + A ++ G+ E Y D KF++
Sbjct: 61 NVIDCGN------AGSCEGGNDLSVWDYAHQH-----GIPDETCNNYQAKDQECDKFNQC 109
Query: 248 ------KIAAAVSNFSVIS-------SDEDQMAANLVKHGPLAVGINAV-WMQTYIGGVS 293
K A+ N+++ S ++M A + +GP++ GI A + Y GG+
Sbjct: 110 GTCNEFKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIY 169
Query: 294 CPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKI 345
Y Y++H V + G+G S YWI++NSWGE WGE G+ +I
Sbjct: 170 AEYQDTTYINHVVSVAGWGIS-------DGTEYWIVRNSWGEPWGERGWLRI 214
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex
pdb|3CBK|A Chain A, Chagasin-Cathepsin B
Length = 266
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 119/273 (43%), Gaps = 62/273 (22%)
Query: 137 LPTDFD----WRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSL--SEQQLV 190
LP FD W + ++DQG+CGS W+F A A+ + T VS+ S + L+
Sbjct: 7 LPASFDAREQWPQCPTIKEIRDQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 66
Query: 191 DCDHECDPEESGS-CDSGCNGGLMNSAFEYILKAGGVER--------------------- 228
C GS C GCNGG A+ + + G V
Sbjct: 67 TC--------CGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEAHV 118
Query: 229 ---------EKDYPYTG--TDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLA 277
E D P + G K +++SV +S++D MA + K+GP+
Sbjct: 119 NGARPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMA-EIYKNGPVE 177
Query: 278 VGINAVW--MQTYIGGVSCPYICGKYLD-HGVLIVGYGSSGFAPIRFKEKPYWIIKNSWG 334
G +V+ Y GV ++ G+ + H + I+G+G PYW++ NSW
Sbjct: 178 -GAFSVYSDFLLYKSGVY-QHVTGEMMGGHAIRILGWGVE-------NGTPYWLVANSWN 228
Query: 335 ENWGENGYYKICMGRNVCGVDSMVSSVAAIHTT 367
+WG+NG++KI G++ CG++S V VA I T
Sbjct: 229 TDWGDNGFFKILRGQDHCGIESEV--VAGIPRT 259
>pdb|1K3B|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJG|B Chain B, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
pdb|2DJF|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
Length = 164
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 74/159 (46%), Gaps = 30/159 (18%)
Query: 137 LPTDFDWRD-HGA--VTGVKDQGACGSCWSFSATGALEGAHFLSTG--ELVSLSEQQLVD 191
LPT +DWR+ HG V+ V++Q +CGSC+SF++ G LE + T + LS Q++V
Sbjct: 1 LPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVS 60
Query: 192 CDHECDPEESGSCDSGCNGGLMNSAFEYILKAG-----GVEREKDYPYTGTDGGSCKFDK 246
C GC GG F Y++ G+ E +PYTGTD CK +
Sbjct: 61 CSQYAQ---------GCEGG-----FPYLIAGKYAQDFGLVEEACFPYTGTD-SPCKMKE 105
Query: 247 SKIAAAVSNFSVISS-----DEDQMAANLVKHGPLAVGI 280
S + + +E M LV HGP+AV
Sbjct: 106 DCFRYYSSEYHYVGGFYGGCNEALMKLELVHHGPMAVAF 144
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B-
E64c Complex
pdb|2DC6|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca073 Complex
pdb|2DC7|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca042 Complex
pdb|2DC8|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca059 Complex
pdb|2DC9|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca074me Complex
pdb|2DCA|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca075 Complex
pdb|2DCB|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca076 Complex
pdb|2DCC|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca077 Complex
pdb|2DCD|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca078 Complex
Length = 256
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 121/264 (45%), Gaps = 45/264 (17%)
Query: 137 LPTDFD----WRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSL---SEQQL 189
LP FD W + + ++DQG+CGSCW+F A A+ + + V++ +E L
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDML 60
Query: 190 VDCDHECDPEESGSCDSGC----------NGGLMNSAF---EYILKAGGVEREKDYPYTG 236
C EC +G SG +GGL NS Y + P
Sbjct: 61 TCCGGECGDGCNGGFPSGAWNFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRPPCT 120
Query: 237 TDGGSCKFDKSKIAA-----------AVSNFSVISSDEDQMAANLVKHGPLAVGINAVW- 284
+G + K K+ S++SV +++E ++ A + K+GP+ G +V+
Sbjct: 121 GEGDTPKCSKTCEPGYSPSYKEDKHFGCSSYSV-ANNEKEIMAEIYKNGPVE-GAFSVYS 178
Query: 285 -MQTYIGGVSCPYICGKYLD-HGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGY 342
Y GV ++ G+ + H + I+G+G PYW++ NSW +WG+NG+
Sbjct: 179 DFLLYKSGVY-QHVSGEIMGGHAIRILGWGVE-------NGTPYWLVGNSWNTDWGDNGF 230
Query: 343 YKICMGRNVCGVDS-MVSSVAAIH 365
+KI G++ CG++S +V+ + H
Sbjct: 231 FKILRGQDHCGIESEIVAGMPCTH 254
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074
Complex
Length = 253
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 117/256 (45%), Gaps = 44/256 (17%)
Query: 137 LPTDFD----WRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSL---SEQQL 189
LP FD W + + ++DQG+CGSCW+F A A+ + + V++ +E L
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDML 60
Query: 190 VDCDHECDPEESGSCDSGC----------NGGLMNSAF---EYILKAGGVEREKDYPYTG 236
C EC +G SG +GGL NS Y + P
Sbjct: 61 TCCGGECGDGCNGGEPSGAWNFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRPPCT 120
Query: 237 TDGGSCKFDKSKIAA-----------AVSNFSVISSDEDQMAANLVKHGPLAVGINAVW- 284
+G + K K+ S++SV +++E ++ A + K+GP+ G +V+
Sbjct: 121 GEGDTPKCSKTCEPGYSPSYKEDKHFGCSSYSV-ANNEKEIMAEIYKNGPVE-GAFSVYS 178
Query: 285 -MQTYIGGVSCPYICGKYLD-HGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGY 342
Y GV ++ G+ + H + I+G+G PYW++ NSW +WG+NG+
Sbjct: 179 DFLLYKSGVY-QHVSGEIMGGHAIRILGWGVE-------NGTPYWLVANSWNTDWGDNGF 230
Query: 343 YKICMGRNVCGVDSMV 358
+KI G++ CG++S +
Sbjct: 231 FKILRGQDHCGIESEI 246
>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJF|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
pdb|2DJG|C Chain C, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
Length = 69
Score = 61.6 bits (148), Expect = 6e-10, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 5/62 (8%)
Query: 303 DHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSSVA 362
+H VL+VGYG+ + + YWI+KNSWG WGENGY++I G + C ++S+ +
Sbjct: 10 NHAVLLVGYGTDSASGM-----DYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAAT 64
Query: 363 AI 364
I
Sbjct: 65 PI 66
>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
pdb|3CH3|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
Length = 265
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 93/228 (40%), Gaps = 43/228 (18%)
Query: 152 VKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGG 211
V+DQG C + W F++ LE + E +S + +C E CD G
Sbjct: 24 VEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANC---YKGEHKDRCDEG---- 76
Query: 212 LMNSAFEY---ILKAGGVEREKDYPYTGTD-GGSCK---------FDKSKIAAAVSN--- 255
+S E+ I G + E +YPY G C +D KI +
Sbjct: 77 --SSPMEFLQIIEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILHNKNEPNS 134
Query: 256 -----FSVISSD--EDQMAA-------NLVKHGPLAVGINAVWMQTY-IGGVSCPYICGK 300
++ S+ D M A ++ G + I A + Y G +CG
Sbjct: 135 LDGKGYTAYESERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSGKKVQNLCGD 194
Query: 301 -YLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICM 347
DH V IVGYG+ + ++K YWI++NSWG WG+ GY+K+ M
Sbjct: 195 DTADHAVNIVGYGN--YVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDM 240
>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum With Loop 690-700 Ordered
Length = 265
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 93/228 (40%), Gaps = 43/228 (18%)
Query: 152 VKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGG 211
V+DQG C + W F++ LE + E +S + +C E CD G
Sbjct: 25 VEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANC---YKGEHKDRCDEG---- 77
Query: 212 LMNSAFEY---ILKAGGVEREKDYPYTGTD-GGSCK---------FDKSKIAAAVSN--- 255
+S E+ I G + E +YPY G C +D KI +
Sbjct: 78 --SSPMEFLQIIEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILHNKNEPNS 135
Query: 256 -----FSVISSD--EDQMAA-------NLVKHGPLAVGINAVWMQTY-IGGVSCPYICGK 300
++ S+ D M A ++ G + I A + Y G +CG
Sbjct: 136 LDGKGYTAYESERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSGKKVKNLCGD 195
Query: 301 -YLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICM 347
DH V IVGYG+ + ++K YWI++NSWG WG+ GY+K+ M
Sbjct: 196 DTADHAVNIVGYGN--YVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDM 241
>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|D Chain D, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|B Chain B, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|E Chain E, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|B Chain B, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 205
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 68/117 (58%), Gaps = 15/117 (12%)
Query: 254 SNFSVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGVSCPYICGKYLD-HGVLIVG 310
+++SV +S++D MA + K+GP+ G +V+ Y GV ++ G+ + H + I+G
Sbjct: 100 NSYSVSNSEKDIMA-EIYKNGPVE-GAFSVYSDFLLYKSGVY-QHVTGEMMGGHAIRILG 156
Query: 311 YGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSSVAAIHTT 367
+G PYW++ NSW +WG+NG++KI G++ CG++S V VA I T
Sbjct: 157 WGVE-------NGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEV--VAGIPRT 204
>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 205
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 60/103 (58%), Gaps = 12/103 (11%)
Query: 259 ISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGVSCPYICGKYLD-HGVLIVGYGSSG 315
++++E ++ A + K+GP+ G +V+ Y GV ++ G+ + H + I+G+G
Sbjct: 105 VANNEKEIMAEIYKNGPVE-GAFSVYSDFLLYKSGVY-QHVSGEIMGGHAIRILGWGVE- 161
Query: 316 FAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMV 358
PYW++ NSW +WG+NG++KI G++ CG++S +
Sbjct: 162 ------NGTPYWLVGNSWNTDWGDNGFFKILRGQDHCGIESEI 198
>pdb|3F75|P Chain P, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 106
Score = 49.7 bits (117), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 40 EQSEDHLLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVT 99
E E H +A FS F++ ++K+YAT+EE R+ +FK NL + +
Sbjct: 15 EWKEAHFQDA---FSSFQAMYAKSYATEEEKQRRYAIFKNNLVYIHTHNQQGYSYSLKMN 71
Query: 100 KFSDLTPSEFRRQFLGLNRRLRLPA 124
F DL+ EFRR++LG + L +
Sbjct: 72 HFGDLSRDEFRRKYLGFKKSRNLKS 96
>pdb|3OIS|A Chain A, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|B Chain B, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|C Chain C, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|D Chain D, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
Length = 291
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 88/217 (40%), Gaps = 43/217 (19%)
Query: 152 VKDQGACGSCWSFSATGAL--EGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCN 209
V DQG GSC + + A+ E H + E + +L +E E + DSG
Sbjct: 69 VYDQGRIGSCTANALAAAIQFERIHDKQSPEFIP---SRLFIYYNERKIEGHVNYDSG-- 123
Query: 210 GGLMNSAFEYILKAGGVEREKDYPY--TGTDGGSCKFDKSKIAAA--------------V 253
++ + +L GV EK++PY T D + +F A+ +
Sbjct: 124 -AMIRDGIK-VLHKLGVCPEKEWPYGDTPADPRTEEFPPGAPASKKPSDQCYKDAQNYKI 181
Query: 254 SNFSVISSDEDQMAANLVKHGPLAVGINAVWMQTYIGGVSCPYICGKYLD-------HGV 306
+ +S ++ D D + A L P G + +++G S P H V
Sbjct: 182 TEYSRVAQDIDHLKACLAVGSPFVFGFSV--YNSWVGNNSLPVRIPLPTKNDTLEGGHAV 239
Query: 307 LIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYY 343
L VGY IR ++ I+NSWG N GE+GY+
Sbjct: 240 LCVGYDDE----IR-----HFRIRNSWGNNVGEDGYF 267
>pdb|1ICF|B Chain B, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|D Chain D, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1MHW|C Chain C, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|D Chain D, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 42
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 326 YWIIKNSWGENWGENGYYKICMG-RNVCGVDSMVS 359
YW++KNSWGE WG GY K+ RN CG+ S S
Sbjct: 4 YWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAAS 38
>pdb|1SP4|A Chain A, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 48
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 137 LPTDFD----WRDHGAVTGVKDQGACGSCWSFSATGAL 170
LP FD W + + ++DQG+CGSCW+F A A+
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAI 38
>pdb|1HUC|A Chain A, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|C Chain C, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|A Chain A, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|D Chain D, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|A Chain A, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 47
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 137 LPTDFD----WRDHGAVTGVKDQGACGSCWSFSATGAL 170
LP FD W + ++DQG+CGSCW+F A A+
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAI 38
>pdb|1QGU|A Chain A, Nitrogenase Mo-Fe Protein From Klebsiella Pneumoniae,
Dithionite-Reduced State
pdb|1QGU|C Chain C, Nitrogenase Mo-Fe Protein From Klebsiella Pneumoniae,
Dithionite-Reduced State
pdb|1QH8|A Chain A, Nitrogenase Mofe Protein From Klebsiella Pneumoniae, As-
Crystallized (Mixed Oxidation) State
pdb|1QH8|C Chain C, Nitrogenase Mofe Protein From Klebsiella Pneumoniae, As-
Crystallized (Mixed Oxidation) State
pdb|1QH1|A Chain A, Nitrogenase Mofe Protein From Klebsiella Pneumoniae,
Phenosafranin Oxidized State
pdb|1QH1|C Chain C, Nitrogenase Mofe Protein From Klebsiella Pneumoniae,
Phenosafranin Oxidized State
Length = 478
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 257 SVISSDEDQMAANLVKHGPLAVGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYG 312
+VI+ E QMAA + K+ P G + Y+GG+ ++ G Y D G+ I+ G
Sbjct: 324 AVIARYEGQMAAIIAKYRPRLEGRKVL---LYMGGLRPRHVIGAYEDLGMEIIAAG 376
>pdb|1H1L|A Chain A, Nitrogenase Mo-Fe Protein From Klebsiella Pneumoniae, Nifv
Mutant
pdb|1H1L|C Chain C, Nitrogenase Mo-Fe Protein From Klebsiella Pneumoniae, Nifv
Mutant
Length = 481
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 257 SVISSDEDQMAANLVKHGPLAVGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYG 312
+VI+ E QMAA + K+ P G + Y+GG+ ++ G Y D G+ I+ G
Sbjct: 324 AVIARYEGQMAAIIAKYRPRLEGRKVL---LYMGGLRPRHVIGAYEDLGMEIIAAG 376
>pdb|2B8M|A Chain A, Crystal Structure Of A Rmlc-Like Cupin Family Protein
With A Double- Stranded Beta-Helix Fold (Mj0764) From
Methanocaldococcus Jannaschii At 1.70 A Resolution
Length = 117
Score = 32.3 bits (72), Expect = 0.48, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 25 NDDDAMIRQVVPSDGEQSEDHLLNAEHHFSLFKSKFSKTYATQEEHDYR 73
N + I +V GEQ H N+ H + K + + T QE H+Y+
Sbjct: 23 NTEHVQINHIVLPRGEQXPKHYSNSYVHLIIIKGEXTLTLEDQEPHNYK 71
>pdb|3DWV|A Chain A, Glutathione Peroxidase-Type Tryparedoxin Peroxidase,
Oxidized Form
pdb|3DWV|B Chain B, Glutathione Peroxidase-Type Tryparedoxin Peroxidase,
Oxidized Form
Length = 187
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 11/84 (13%)
Query: 240 GSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKH--GPLAVGINAVWMQTYIGGVSCPYI 297
GS + + K++AA S F D D NLV+H PL + Y C Y
Sbjct: 11 GSLRSSRKKMSAASSIFDFEVLDADHKPYNLVQHKGSPLLI---------YNVASKCGYT 61
Query: 298 CGKYLDHGVLIVGYGSSGFAPIRF 321
G Y L Y S GF + F
Sbjct: 62 KGGYETATTLYNKYKSQGFTVLAF 85
>pdb|2L95|A Chain A, Solution Structure Of Cytotoxic T-Lymphocyte
Antigent-2(Ctla Protein), Crammer At Ph 6.0
Length = 80
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 56 FKSKFSKTYATQEEHDYRFRVF---KANLRRAKRR-QLLDPTAVHGVTKFSDLTPSEFRR 111
+KSKF K Y +E+ R R++ KA + R+ + + T G+ +DLTP EF +
Sbjct: 13 YKSKFDKNYEAEEDL-MRRRIYAESKARIEEHNRKFEKGEVTWKMGINHLADLTPEEFAQ 71
Query: 112 Q 112
+
Sbjct: 72 R 72
>pdb|2CB5|A Chain A, Human Bleomycin Hydrolase, C73s/dele455 Mutant
pdb|2CB5|B Chain B, Human Bleomycin Hydrolase, C73s/dele455 Mutant
Length = 453
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
Query: 327 WIIKNSWGENWGENGYYKICM 347
W ++NSWGE+ G GY +CM
Sbjct: 391 WRVENSWGEDHGHKGY--LCM 409
>pdb|1CB5|A Chain A, Human Bleomycin Hydrolase.
pdb|1CB5|B Chain B, Human Bleomycin Hydrolase.
pdb|1CB5|C Chain C, Human Bleomycin Hydrolase
Length = 453
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
Query: 327 WIIKNSWGENWGENGYYKICM 347
W ++NSWGE+ G GY +CM
Sbjct: 391 WRVENSWGEDHGHKGY--LCM 409
>pdb|3VP9|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Yeast
General Corepressor Tup1p Mutant
pdb|3VP9|B Chain B, Crystal Structure Of The N-Terminal Domain Of The Yeast
General Corepressor Tup1p Mutant
Length = 92
Score = 28.1 bits (61), Expect = 7.4, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 37 SDGEQSEDHLLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVH 96
S+ + + LL+A L S+ + TY Q + DY FK N + A+ +Q+ +
Sbjct: 6 SNTQNKLNELLDAIRQEFLQVSQEANTYRLQNQKDYD---FKMNQQLAEMQQIRNTVYER 62
Query: 97 GVT--KFSDLTPSEFRRQFLGLNRR 119
+T K D E + LGL +R
Sbjct: 63 ELTHRKMKDAYEEEIKHLKLGLEQR 87
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/75 (20%), Positives = 35/75 (46%)
Query: 185 SEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKF 244
+ ++ + D + E S + +G + NS + + +GG + + TG DGG +
Sbjct: 298 ARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIW 357
Query: 245 DKSKIAAAVSNFSVI 259
D + +A+ + ++
Sbjct: 358 DVRSLESALKDLKIV 372
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/75 (20%), Positives = 35/75 (46%)
Query: 185 SEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKF 244
+ ++ + D + E S + +G + NS + + +GG + + TG DGG +
Sbjct: 298 ARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIW 357
Query: 245 DKSKIAAAVSNFSVI 259
D + +A+ + ++
Sbjct: 358 DVRSLESALKDLKIV 372
>pdb|3PW3|A Chain A, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|B Chain B, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|C Chain C, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|D Chain D, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|E Chain E, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|F Chain F, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
Length = 383
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 149 VTGVKDQGACGSCWSFSATGALE 171
+T VK+Q G+CW +S+ LE
Sbjct: 22 ITSVKNQNRAGTCWCYSSYSFLE 44
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,368,310
Number of Sequences: 62578
Number of extensions: 487346
Number of successful extensions: 1318
Number of sequences better than 100.0: 125
Number of HSP's better than 100.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 873
Number of HSP's gapped (non-prelim): 137
length of query: 369
length of database: 14,973,337
effective HSP length: 100
effective length of query: 269
effective length of database: 8,715,537
effective search space: 2344479453
effective search space used: 2344479453
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)