Query 017548
Match_columns 369
No_of_seqs 327 out of 1930
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 09:33:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017548.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017548hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1542 Cysteine proteinase Ca 100.0 2.1E-92 4.6E-97 638.5 26.1 326 21-363 41-371 (372)
2 PTZ00203 cathepsin L protease; 100.0 1.1E-80 2.3E-85 589.7 35.9 303 48-368 33-345 (348)
3 PTZ00021 falcipain-2; Provisio 100.0 1.4E-76 3.1E-81 576.7 31.2 303 48-362 164-487 (489)
4 PTZ00200 cysteine proteinase; 100.0 2.5E-75 5.3E-80 566.7 33.4 295 48-363 121-445 (448)
5 KOG1543 Cysteine proteinase Ca 100.0 7.1E-71 1.5E-75 519.2 29.6 289 57-363 30-323 (325)
6 cd02621 Peptidase_C1A_Cathepsi 100.0 1.4E-60 3E-65 436.0 21.7 212 137-364 1-243 (243)
7 cd02698 Peptidase_C1A_Cathepsi 100.0 3.4E-59 7.3E-64 425.3 22.4 209 137-364 1-239 (239)
8 cd02620 Peptidase_C1A_Cathepsi 100.0 1.6E-58 3.4E-63 420.1 21.3 206 138-360 1-235 (236)
9 cd02248 Peptidase_C1A Peptidas 100.0 1E-57 2.2E-62 408.7 22.0 206 138-360 1-209 (210)
10 PTZ00049 cathepsin C-like prot 100.0 3.6E-56 7.9E-61 442.3 23.4 218 134-367 378-680 (693)
11 PTZ00364 dipeptidyl-peptidase 100.0 3.3E-56 7.2E-61 438.7 22.7 215 135-365 203-461 (548)
12 PF00112 Peptidase_C1: Papain 100.0 1.9E-55 4.1E-60 395.8 18.8 211 137-362 1-219 (219)
13 smart00645 Pept_C1 Papain fami 100.0 2.9E-51 6.3E-56 355.3 17.3 170 137-360 1-172 (174)
14 cd02619 Peptidase_C1 C1 Peptid 100.0 4E-47 8.6E-52 342.5 20.3 198 140-349 1-213 (223)
15 PTZ00462 Serine-repeat antigen 100.0 3.8E-47 8.3E-52 387.7 21.9 208 149-365 544-783 (1004)
16 KOG1544 Predicted cysteine pro 100.0 1.8E-45 4E-50 328.8 7.7 273 84-367 153-464 (470)
17 COG4870 Cysteine protease [Pos 100.0 4E-31 8.6E-36 242.8 8.6 211 135-353 97-318 (372)
18 cd00585 Peptidase_C1B Peptidas 99.9 1.5E-24 3.2E-29 210.1 16.7 188 150-348 55-399 (437)
19 PF03051 Peptidase_C1_2: Pepti 99.8 2.2E-17 4.8E-22 160.3 16.1 190 150-348 56-400 (438)
20 PF08246 Inhibitor_I29: Cathep 99.6 1.1E-15 2.4E-20 107.6 7.0 57 53-109 1-58 (58)
21 smart00848 Inhibitor_I29 Cathe 99.4 1.8E-13 3.9E-18 96.0 5.4 56 53-108 1-57 (57)
22 COG3579 PepC Aminopeptidase C 99.1 3.3E-10 7.2E-15 103.5 11.3 81 261-347 295-401 (444)
23 KOG4128 Bleomycin hydrolases a 98.0 4.6E-06 1E-10 76.6 4.0 84 150-234 63-168 (457)
24 PF05543 Peptidase_C47: Stapho 96.8 0.016 3.6E-07 49.2 10.0 121 154-335 18-146 (175)
25 PF13529 Peptidase_C39_2: Pept 96.7 0.02 4.2E-07 46.9 10.0 57 262-333 88-144 (144)
26 PF08127 Propeptide_C1: Peptid 89.7 0.23 5E-06 31.8 1.7 35 82-118 4-38 (41)
27 PF14399 Transpep_BrtH: NlpC/p 89.6 0.93 2E-05 42.8 6.6 47 263-314 78-124 (317)
28 PF09778 Guanylate_cyc_2: Guan 87.4 2.3 4.9E-05 37.8 6.9 53 262-314 112-172 (212)
29 PF07172 GRP: Glycine rich pro 84.1 0.92 2E-05 34.9 2.5 11 1-11 1-11 (95)
30 COG4990 Uncharacterized protei 83.7 2.5 5.4E-05 36.2 5.1 47 262-334 122-168 (195)
31 PF12385 Peptidase_C70: Papain 79.1 26 0.00057 29.5 9.5 39 262-314 97-135 (166)
32 PRK10081 entericidin B membran 73.7 3.8 8.3E-05 27.0 2.6 19 1-19 2-20 (48)
33 cd02549 Peptidase_C39A A sub-f 70.5 14 0.00031 29.8 6.1 34 266-312 70-103 (141)
34 PF15284 PAGK: Phage-encoded v 70.2 3.6 7.7E-05 28.5 1.9 23 1-23 1-25 (61)
35 COG5510 Predicted small secret 69.1 6 0.00013 25.4 2.6 19 1-19 2-20 (44)
36 PF08139 LPAM_1: Prokaryotic m 68.8 3.4 7.4E-05 23.4 1.3 14 2-15 8-21 (25)
37 cd00044 CysPc Calpains, domain 67.2 14 0.00031 34.9 6.2 42 302-348 235-302 (315)
38 PF05984 Cytomega_UL20A: Cytom 59.4 9 0.0002 28.3 2.4 21 1-21 1-22 (100)
39 PRK10053 hypothetical protein; 51.8 14 0.00029 30.2 2.6 20 1-20 1-20 (130)
40 PF11777 DUF3316: Protein of u 51.4 13 0.00029 29.5 2.5 19 1-19 1-19 (114)
41 PF10731 Anophelin: Thrombin i 47.6 21 0.00044 24.7 2.5 6 1-6 1-6 (65)
42 PF01640 Peptidase_C10: Peptid 44.9 1.1E+02 0.0024 26.6 7.5 51 263-344 140-192 (192)
43 PF02402 Lysis_col: Lysis prot 39.9 12 0.00026 24.1 0.4 12 1-12 1-12 (46)
44 PRK09810 entericidin A; Provis 39.9 30 0.00065 22.1 2.2 8 1-8 2-9 (41)
45 PF15240 Pro-rich: Proline-ric 39.1 19 0.00041 31.0 1.7 8 11-18 8-15 (179)
46 PF10717 ODV-E18: Occlusion-de 37.3 27 0.00059 25.9 2.0 18 4-21 31-48 (85)
47 PRK10386 curli assembly protei 36.8 46 0.00099 27.2 3.4 19 1-19 1-19 (130)
48 PF12276 DUF3617: Protein of u 33.2 32 0.0007 28.8 2.2 15 1-15 1-15 (162)
49 smart00230 CysPc Calpain-like 33.0 69 0.0015 30.4 4.6 27 302-335 227-255 (318)
50 PRK13697 cytochrome c6; Provis 32.9 48 0.001 25.7 3.0 15 1-15 1-15 (111)
51 TIGR00156 conserved hypothetic 31.9 40 0.00087 27.3 2.4 12 1-12 1-12 (126)
52 PF11912 DUF3430: Protein of u 31.7 36 0.00079 29.9 2.4 17 1-17 1-17 (212)
53 PF07172 GRP: Glycine rich pro 31.5 44 0.00096 25.7 2.5 6 4-9 7-12 (95)
54 PF02553 CbiN: Cobalt transpor 29.1 47 0.001 24.2 2.1 13 1-13 1-13 (74)
55 PRK10449 heat-inducible protei 28.9 43 0.00094 27.6 2.2 19 1-19 1-19 (140)
56 PRK13883 conjugal transfer pro 28.8 36 0.00077 28.6 1.7 19 1-19 1-19 (151)
57 PF11106 YjbE: Exopolysacchari 28.7 53 0.0011 24.0 2.3 11 1-11 1-11 (80)
58 COG3088 CcmH Uncharacterized p 28.3 1.5E+02 0.0032 24.8 5.1 19 1-19 1-19 (153)
59 PF08138 Sex_peptide: Sex pept 28.1 20 0.00042 24.2 0.0 17 1-17 1-17 (56)
60 PF11153 DUF2931: Protein of u 27.8 41 0.00089 29.9 2.0 18 1-19 1-18 (216)
61 PRK10780 periplasmic chaperone 27.1 94 0.002 26.3 4.1 16 1-16 1-16 (165)
62 PF15240 Pro-rich: Proline-ric 26.2 52 0.0011 28.3 2.2 14 10-23 3-16 (179)
63 PF06291 Lambda_Bor: Bor prote 26.1 37 0.0008 26.2 1.2 19 1-19 1-19 (97)
64 KOG4404 Tandem pore domain K+ 26.1 1.3E+02 0.0029 28.5 5.0 18 5-22 9-26 (350)
65 PRK07718 fliL flagellar basal 25.0 55 0.0012 27.1 2.2 8 1-8 1-8 (142)
66 PF10880 DUF2673: Protein of u 24.6 77 0.0017 21.6 2.3 21 1-21 1-21 (65)
67 TIGR02052 MerP mercuric transp 24.3 49 0.0011 23.7 1.6 15 1-15 1-15 (92)
68 PF05887 Trypan_PARP: Procycli 23.7 26 0.00057 28.5 0.0 18 1-18 1-19 (143)
69 COG1792 MreC Cell shape-determ 23.6 3.2E+02 0.007 25.4 7.2 22 53-74 61-82 (284)
70 PRK10144 formate-dependent nit 23.0 92 0.002 25.3 3.0 9 1-9 1-9 (126)
71 PF12071 DUF3551: Protein of u 22.6 94 0.002 23.2 2.8 11 1-11 1-11 (82)
72 PF08194 DIM: DIM protein; In 22.4 81 0.0018 19.5 1.9 9 1-9 1-9 (36)
73 PF04202 Mfp-3: Foot protein 3 22.1 77 0.0017 22.4 2.0 11 1-11 1-11 (71)
74 PRK14758 hypothetical protein; 21.8 98 0.0021 17.6 2.0 7 13-19 15-21 (27)
75 TIGR02829 spore_III_AE stage I 21.0 1.7E+02 0.0037 28.6 5.0 19 1-19 1-19 (381)
76 PRK10936 TMAO reductase system 21.0 75 0.0016 30.2 2.5 17 1-17 1-17 (343)
77 PRK15240 resistance to complem 20.2 73 0.0016 27.7 2.1 12 1-12 1-12 (185)
No 1
>KOG1542 consensus Cysteine proteinase Cathepsin F [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-92 Score=638.53 Aligned_cols=326 Identities=61% Similarity=1.077 Sum_probs=293.8
Q ss_pred cccCCCCCcceeeccCCCCCCchhhhhcHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhcCCCC-Ceeeeec
Q 017548 21 AVAVNDDDAMIRQVVPSDGEQSEDHLLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDP-TAVHGVT 99 (369)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~f~~~~~k~Y~~~~e~~~R~~iF~~N~~~I~~~N~~~~-s~~~giN 99 (369)
+..+..+...++++.... ......++.+++|..|+.+|+|+|.+.+|..+|+.+|+.|+..+++++..++ +..+|+|
T Consensus 41 ~~v~~~~~~~i~~v~~~~--~~~~~~l~~~~~F~~F~~kf~r~Y~s~eE~~~Rl~iF~~N~~~a~~~q~~d~gsA~yGvt 118 (372)
T KOG1542|consen 41 SVVPLGDDLTIRQVVRLQ--DLNPRGLGLEDSFKLFTIKFGRSYASREEHAHRLSIFKHNLLRAERLQENDPGSAEYGVT 118 (372)
T ss_pred cccccchhhhhhhhhhhc--ccCCcccchHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHHHHHHHhhhcCccccccCcc
Confidence 444445677788777521 2334456679999999999999999999999999999999999999998887 9999999
Q ss_pred cCCCCChHHHHhhhcCCccC-CCCCCCCCCCCCCCCCCCCCceeccCCCCCCcccCCCCCccHHHHHhhhHHHHHHhhhc
Q 017548 100 KFSDLTPSEFRRQFLGLNRR-LRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLST 178 (369)
Q Consensus 100 ~FaDlt~~Ef~~~~~~~~~~-~~~~~~~~~~~~~~~~~lP~~~Dwr~~g~v~pV~dQg~cgsCwAfa~~~~le~~~~~~~ 178 (369)
+|+|||++||++.+++.+.. .+.+.....++..+...||.+||||++|.||||||||+||||||||+++++|++++|++
T Consensus 119 qFSDlT~eEFkk~~l~~~~~~~~~~~~~~~~~~~~~~~lP~~fDWR~kgaVTpVKnQG~CGSCWAFS~tG~vEga~~i~~ 198 (372)
T KOG1542|consen 119 QFSDLTEEEFKKIYLGVKRRGSKLPGDAAEAPIEPGESLPESFDWRDKGAVTPVKNQGMCGSCWAFSTTGAVEGAWAIAT 198 (372)
T ss_pred chhhcCHHHHHHHhhccccccccCccccccCcCCCCCCCCcccchhccCCccccccCCcCcchhhhhhhhhhhhHHHhhc
Confidence 99999999999999987763 34444445555567789999999999999999999999999999999999999999999
Q ss_pred CCccccChhHhhhcCCCCCCCCCCCCCCCCCCCChHHHHHHHHHcCCcCCCCCcccCCCCCCCccCCCCCceEEeeeeEe
Q 017548 179 GELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSV 258 (369)
Q Consensus 179 ~~~~~lS~q~l~dc~~~~~~~~~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPy~~~~~~~c~~~~~~~~~~i~~~~~ 258 (369)
|++++||||+|+||+. +++||+||.+..||+|+++.+|+..|++|||++.....|..+..+..+.|.+|..
T Consensus 199 g~LvsLSEQeLvDCD~---------~d~gC~GGl~~nA~~~~~~~gGL~~E~dYPY~g~~~~~C~~~~~~~~v~I~~f~~ 269 (372)
T KOG1542|consen 199 GKLVSLSEQELVDCDS---------CDNGCNGGLMDNAFKYIKKAGGLEKEKDYPYTGKKGNQCHFDKSKIVVSIKDFSM 269 (372)
T ss_pred CcccccchhhhhcccC---------cCCcCCCCChhHHHHHHHHhCCccccccCCccccCCCccccchhhceEEEeccEe
Confidence 9999999999999996 4999999999999999888889999999999999845999999999999999999
Q ss_pred cCchHHHHHHHHHhcCCeEEEEEcccccccCCCeeec--CCCCCc-CCeEEEEEEecccCCcCCcCCCCCEEEEEcCCCC
Q 017548 259 ISSDEDQMAANLVKHGPLAVGINAVWMQTYIGGVSCP--YICGKY-LDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGE 335 (369)
Q Consensus 259 ~~~~~~~ik~~l~~~gPV~v~~~~~~f~~y~~Gi~~~--~~~~~~-~~Hav~iVGyg~~~~~~~~~~~~~ywivkNSWG~ 335 (369)
++.|+++|.+.|+++|||+|+|++..||+|.+||..| ..|++. ++|||+|||||.++ -.++|||||||||+
T Consensus 270 l~~nE~~ia~wLv~~GPi~vgiNa~~mQ~YrgGV~~P~~~~Cs~~~~~HaVLlvGyG~~g------~~~PYWIVKNSWG~ 343 (372)
T KOG1542|consen 270 LSNNEDQIAAWLVTFGPLSVGINAKPMQFYRGGVSCPSKYICSPKLLNHAVLLVGYGSSG------YEKPYWIVKNSWGT 343 (372)
T ss_pred cCCCHHHHHHHHHhcCCeEEEEchHHHHHhcccccCCCcccCCccccCceEEEEeecCCC------CCCceEEEECCccc
Confidence 9999999999999999999999988899999999988 789877 99999999999883 27899999999999
Q ss_pred CCCCCcEEEEEeCCCeeccccceeeEEE
Q 017548 336 NWGENGYYKICMGRNVCGVDSMVSSVAA 363 (369)
Q Consensus 336 ~WG~~Gy~~i~~~~n~cgi~~~~~~~~~ 363 (369)
+|||+||+|+.||.|.|||+++++++.+
T Consensus 344 ~WGE~GY~~l~RG~N~CGi~~mvss~~v 371 (372)
T KOG1542|consen 344 SWGEKGYYKLCRGSNACGIADMVSSAAV 371 (372)
T ss_pred cccccceEEEeccccccccccchhhhhc
Confidence 9999999999999999999999998764
No 2
>PTZ00203 cathepsin L protease; Provisional
Probab=100.00 E-value=1.1e-80 Score=589.70 Aligned_cols=303 Identities=41% Similarity=0.749 Sum_probs=256.4
Q ss_pred cHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeeeccCCCCChHHHHhhhcCCccCCC-CCCCC
Q 017548 48 NAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLR-LPADA 126 (369)
Q Consensus 48 ~~~~~f~~f~~~~~k~Y~~~~e~~~R~~iF~~N~~~I~~~N~~~~s~~~giN~FaDlt~~Ef~~~~~~~~~~~~-~~~~~ 126 (369)
..+.+|++|+++|+|+|.+.+|+.+|+.+|++|+++|++||+.+.+|++|+|+|+|||++||.+.+++...... .....
T Consensus 33 ~~~~~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~~~~~lg~N~FaDlT~eEf~~~~l~~~~~~~~~~~~~ 112 (348)
T PTZ00203 33 PAAALFEEFKRTYQRAYGTLTEEQQRLANFERNLELMREHQARNPHARFGITKFFDLSEAEFAARYLNGAAYFAAAKQHA 112 (348)
T ss_pred HHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCCCeEEeccccccCCHHHHHHHhcCCCcccccccccc
Confidence 35567999999999999998899999999999999999999877899999999999999999987764211100 00000
Q ss_pred -C-CCCC-CCCCCCCCceeccCCCCCCcccCCCCCccHHHHHhhhHHHHHHhhhcCCccccChhHhhhcCCCCCCCCCCC
Q 017548 127 -Q-KAPI-LPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGS 203 (369)
Q Consensus 127 -~-~~~~-~~~~~lP~~~Dwr~~g~v~pV~dQg~cgsCwAfa~~~~le~~~~~~~~~~~~lS~q~l~dc~~~~~~~~~~~ 203 (369)
. .... ....++|++||||++|+|+||||||.||||||||+++++|+++++++++.+.||+|+|+||+..
T Consensus 113 ~~~~~~~~~~~~~lP~~~DWR~~g~VtpVkdQg~CGSCWAfa~~~aiEs~~~i~~~~~~~LSeQqLvdC~~~-------- 184 (348)
T PTZ00203 113 GQHYRKARADLSAVPDAVDWREKGAVTPVKNQGACGSCWAFSAVGNIESQWAVAGHKLVRLSEQQLVSCDHV-------- 184 (348)
T ss_pred cccccccccccccCCCCCcCCcCCCCCCccccCCCccHHHHhhHHHHHHHHHHhcCCCccCCHHHHHhccCC--------
Confidence 0 0000 1123689999999999999999999999999999999999999999999999999999999863
Q ss_pred CCCCCCCCChHHHHHHHHHc--CCcCCCCCcccCCCCC--CCccCCCC-CceEEeeeeEecCchHHHHHHHHHhcCCeEE
Q 017548 204 CDSGCNGGLMNSAFEYILKA--GGVEREKDYPYTGTDG--GSCKFDKS-KIAAAVSNFSVISSDEDQMAANLVKHGPLAV 278 (369)
Q Consensus 204 ~~~gC~GG~~~~a~~~~~~~--~Gi~~e~~yPy~~~~~--~~c~~~~~-~~~~~i~~~~~~~~~~~~ik~~l~~~gPV~v 278 (369)
+.||+||++..||+|+.++ +|+++|++|||.+.+. +.|..... ...+.+++|..+..++++|+.+|+++|||+|
T Consensus 185 -~~GC~GG~~~~a~~yi~~~~~ggi~~e~~YPY~~~~~~~~~C~~~~~~~~~~~i~~~~~i~~~e~~~~~~l~~~GPv~v 263 (348)
T PTZ00203 185 -DNGCGGGLMLQAFEWVLRNMNGTVFTEKSYPYVSGNGDVPECSNSSELAPGARIDGYVSMESSERVMAAWLAKNGPISI 263 (348)
T ss_pred -CCCCCCCCHHHHHHHHHHhcCCCCCccccCCCccCCCCCCcCCCCcccccceEecceeecCcCHHHHHHHHHhCCCEEE
Confidence 7799999999999999864 6799999999998751 26874332 2346788888887788899999999999999
Q ss_pred EEEcccccccCCCeeecCCCCC-cCCeEEEEEEecccCCcCCcCCCCCEEEEEcCCCCCCCCCcEEEEEeCCCeeccccc
Q 017548 279 GINAVWMQTYIGGVSCPYICGK-YLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSM 357 (369)
Q Consensus 279 ~~~~~~f~~y~~Gi~~~~~~~~-~~~Hav~iVGyg~~~~~~~~~~~~~ywivkNSWG~~WG~~Gy~~i~~~~n~cgi~~~ 357 (369)
+|++..|++|++|||.. |.. .++|||+|||||.+ +|++|||||||||++|||+|||||+||.|.|||+++
T Consensus 264 ~i~a~~f~~Y~~GIy~~--c~~~~~nHaVliVGYG~~-------~g~~YWiikNSWG~~WGe~GY~ri~rg~n~Cgi~~~ 334 (348)
T PTZ00203 264 AVDASSFMSYHSGVLTS--CIGEQLNHGVLLVGYNMT-------GEVPYWVIKNSWGEDWGEKGYVRVTMGVNACLLTGY 334 (348)
T ss_pred EEEhhhhcCccCceeec--cCCCCCCeEEEEEEEecC-------CCceEEEEEcCCCCCcCcCceEEEEcCCCcccccce
Confidence 99987799999999963 765 48999999999987 688999999999999999999999999999999999
Q ss_pred eeeEEEeccCC
Q 017548 358 VSSVAAIHTTS 368 (369)
Q Consensus 358 ~~~~~~~~~~~ 368 (369)
++.+.+..+.+
T Consensus 335 ~~~~~~~~~~~ 345 (348)
T PTZ00203 335 PVSVHVSQSPT 345 (348)
T ss_pred EEEEecCCCCC
Confidence 99987766554
No 3
>PTZ00021 falcipain-2; Provisional
Probab=100.00 E-value=1.4e-76 Score=576.74 Aligned_cols=303 Identities=34% Similarity=0.651 Sum_probs=253.6
Q ss_pred cHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhcCC-CCCeeeeeccCCCCChHHHHhhhcCCccC-CCC---
Q 017548 48 NAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLL-DPTAVHGVTKFSDLTPSEFRRQFLGLNRR-LRL--- 122 (369)
Q Consensus 48 ~~~~~f~~f~~~~~k~Y~~~~e~~~R~~iF~~N~~~I~~~N~~-~~s~~~giN~FaDlt~~Ef~~~~~~~~~~-~~~--- 122 (369)
+...+|++|+++|+|+|.+.+|+.+|+.+|++|+++|++||+. +.+|++|+|+|+|||++||++.+++.+.. ...
T Consensus 164 e~~~~F~~wk~ky~K~Y~~~eE~~~R~~iF~~Nl~~Ie~hN~~~~~ty~lgiNqFsDlT~EEF~~~~l~~~~~~~~~~~~ 243 (489)
T PTZ00021 164 ENVNSFYLFIKEHGKKYQTPDEMQQRYLSFVENLAKINAHNNKENVLYKKGMNRFGDLSFEEFKKKYLTLKSFDFKSNGK 243 (489)
T ss_pred HHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEeccccccCCHHHHHHHhccccccccccccc
Confidence 4446799999999999999999999999999999999999975 46899999999999999999988765421 000
Q ss_pred --CCCCCCC---C-CCCC--CCCCCceeccCCCCCCcccCCCCCccHHHHHhhhHHHHHHhhhcCCccccChhHhhhcCC
Q 017548 123 --PADAQKA---P-ILPT--NDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDH 194 (369)
Q Consensus 123 --~~~~~~~---~-~~~~--~~lP~~~Dwr~~g~v~pV~dQg~cgsCwAfa~~~~le~~~~~~~~~~~~lS~q~l~dc~~ 194 (369)
+...... . ..+. ...|.+||||+.|.|+||||||.||||||||+++++|++++|++++.+.||+|+|+||+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~P~s~DWR~~g~VtpVKdQG~CGSCWAFAa~~alEs~~~I~~g~~v~LSeQqLVDCs~ 323 (489)
T PTZ00021 244 KSPRVINYDDVIKKYKPKDATFDHAKYDWRLHNGVTPVKDQKNCGSCWAFSTVGVVESQYAIRKNELVSLSEQELVDCSF 323 (489)
T ss_pred cccccccccccccccccccccCCccccccccCCCCCCcccccccccHHHHHHHHHHHHHHHHHcCCCcccCHHHHhhhcc
Confidence 0000000 0 0011 124999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCCCCCCCCCCCCCCChHHHHHHHHHcCCcCCCCCcccCCCCCCCccCCCCCceEEeeeeEecCchHHHHHHHHHhcC
Q 017548 195 ECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHG 274 (369)
Q Consensus 195 ~~~~~~~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPy~~~~~~~c~~~~~~~~~~i~~~~~~~~~~~~ik~~l~~~g 274 (369)
. +.||+||++..|++|+.+.+|+++|++|||.+..++.|....+...+++++|..++ +++|+++|..+|
T Consensus 324 ~---------n~GC~GG~~~~Af~yi~~~gGl~tE~~YPY~~~~~~~C~~~~~~~~~~i~~y~~i~--~~~lk~al~~~G 392 (489)
T PTZ00021 324 K---------NNGCYGGLIPNAFEDMIELGGLCSEDDYPYVSDTPELCNIDRCKEKYKIKSYVSIP--EDKFKEAIRFLG 392 (489)
T ss_pred C---------CCCCCCcchHhhhhhhhhccccCcccccCccCCCCCccccccccccceeeeEEEec--HHHHHHHHHhcC
Confidence 4 78999999999999998888999999999998754789876666668888988876 578999999999
Q ss_pred CeEEEEEccc-ccccCCCeeecCCCCCcCCeEEEEEEecccCC-cC--CcCCCCCEEEEEcCCCCCCCCCcEEEEEeCC-
Q 017548 275 PLAVGINAVW-MQTYIGGVSCPYICGKYLDHGVLIVGYGSSGF-AP--IRFKEKPYWIIKNSWGENWGENGYYKICMGR- 349 (369)
Q Consensus 275 PV~v~~~~~~-f~~y~~Gi~~~~~~~~~~~Hav~iVGyg~~~~-~~--~~~~~~~ywivkNSWG~~WG~~Gy~~i~~~~- 349 (369)
||+|+|++.. |++|++|||.+ .|+..++|||+|||||++.. .. ..+.+.+|||||||||++|||+|||||+|+.
T Consensus 393 PVsv~i~a~~~f~~YkgGIy~~-~C~~~~nHAVlIVGYG~e~~~~~~~~~~~~~~YWIVKNSWGt~WGE~GY~rI~r~~~ 471 (489)
T PTZ00021 393 PISVSIAVSDDFAFYKGGIFDG-ECGEEPNHAVILVGYGMEEIYNSDTKKMEKRYYYIIKNSWGESWGEKGFIRIETDEN 471 (489)
T ss_pred CeEEEEEeecccccCCCCcCCC-CCCCccceEEEEEEecCcCCcccccccCCCCCEEEEECCCCCCcccCeEEEEEcCCC
Confidence 9999999864 99999999975 68777999999999997621 10 1123468999999999999999999999985
Q ss_pred ---CeeccccceeeEE
Q 017548 350 ---NVCGVDSMVSSVA 362 (369)
Q Consensus 350 ---n~cgi~~~~~~~~ 362 (369)
|+|||++.++.+.
T Consensus 472 g~~n~CGI~t~a~yP~ 487 (489)
T PTZ00021 472 GLMKTCSLGTEAYVPL 487 (489)
T ss_pred CCCCCCCCcccceeEe
Confidence 5999999987754
No 4
>PTZ00200 cysteine proteinase; Provisional
Probab=100.00 E-value=2.5e-75 Score=566.70 Aligned_cols=295 Identities=35% Similarity=0.628 Sum_probs=244.5
Q ss_pred cHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeeeccCCCCChHHHHhhhcCCccCCCCCC--C
Q 017548 48 NAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPA--D 125 (369)
Q Consensus 48 ~~~~~f~~f~~~~~k~Y~~~~e~~~R~~iF~~N~~~I~~~N~~~~s~~~giN~FaDlt~~Ef~~~~~~~~~~~~~~~--~ 125 (369)
+...+|++|+++|+|+|.+.+|+.+|+.+|++|+++|++||. +.+|++|+|+|+|||++||.+.+++.+.+..... .
T Consensus 121 e~~~~F~~f~~ky~K~Y~~~~E~~~R~~iF~~Nl~~I~~hN~-~~~y~lgiN~FsDlT~eEF~~~~~~~~~~~~~~~~~~ 199 (448)
T PTZ00200 121 EVYLEFEEFNKKYNRKHATHAERLNRFLTFRNNYLEVKSHKG-DEPYSKEINKFSDLTEEEFRKLFPVIKVPPKSNSTSH 199 (448)
T ss_pred HHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhcC-cCCeEEeccccccCCHHHHHHHhccCCCccccccccc
Confidence 444689999999999999999999999999999999999996 4689999999999999999988765432110000 0
Q ss_pred --------CCCC---CC------------CCCCCCCCceeccCCCCCCcccCCC-CCccHHHHHhhhHHHHHHhhhcCCc
Q 017548 126 --------AQKA---PI------------LPTNDLPTDFDWRDHGAVTGVKDQG-ACGSCWSFSATGALEGAHFLSTGEL 181 (369)
Q Consensus 126 --------~~~~---~~------------~~~~~lP~~~Dwr~~g~v~pV~dQg-~cgsCwAfa~~~~le~~~~~~~~~~ 181 (369)
.... .. .+...+|++||||+.|.|+|||||| .||||||||+++++|++++++++..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~DWR~~g~vtpVkdQG~~CGSCWAFat~~aiEs~~~i~~~~~ 279 (448)
T PTZ00200 200 NNDFKARHVSNPTYLKNLKKAKNTDEDVKDPSKITGEGLDWRRADAVTKVKDQGLNCGSCWAFSSVGSVESLYKIYRDKS 279 (448)
T ss_pred ccccccccccccccccccccccccccccccccccCCCCccCCCCCCCCCcccCCCccchHHHHhHHHHHHHHHHHhcCCC
Confidence 0000 00 0012369999999999999999999 9999999999999999999999999
Q ss_pred cccChhHhhhcCCCCCCCCCCCCCCCCCCCChHHHHHHHHHcCCcCCCCCcccCCCCCCCccCCCCCceEEeeeeEecCc
Q 017548 182 VSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISS 261 (369)
Q Consensus 182 ~~lS~q~l~dc~~~~~~~~~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPy~~~~~~~c~~~~~~~~~~i~~~~~~~~ 261 (369)
+.||+|+|+||+.. +.||+||++..|++|+.++ |+++|++|||.+.. +.|...... .+.+.+|..+.
T Consensus 280 ~~LSeQqLvDC~~~---------~~GC~GG~~~~A~~yi~~~-Gi~~e~~YPY~~~~-~~C~~~~~~-~~~i~~y~~~~- 346 (448)
T PTZ00200 280 VDLSEQELVNCDTK---------SQGCSGGYPDTALEYVKNK-GLSSSSDVPYLAKD-GKCVVSSTK-KVYIDSYLVAK- 346 (448)
T ss_pred eecCHHHHhhccCc---------cCCCCCCcHHHHHHHHhhc-CccccccCCCCCCC-CCCcCCCCC-eeEecceEecC-
Confidence 99999999999863 7899999999999999776 99999999999987 889865443 45678887654
Q ss_pred hHHHHHHHHHhcCCeEEEEEccc-ccccCCCeeecCCCCCcCCeEEEEEEecccCCcCCcCCCCCEEEEEcCCCCCCCCC
Q 017548 262 DEDQMAANLVKHGPLAVGINAVW-MQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGEN 340 (369)
Q Consensus 262 ~~~~ik~~l~~~gPV~v~~~~~~-f~~y~~Gi~~~~~~~~~~~Hav~iVGyg~~~~~~~~~~~~~ywivkNSWG~~WG~~ 340 (369)
+.+.++++ +..|||+|+|++.. |+.|++|||.+ .|+..++|||+|||||.+. .+|.+|||||||||++|||+
T Consensus 347 ~~~~l~~~-l~~GPV~v~i~~~~~f~~Yk~GIy~~-~C~~~~nHaV~lVGyG~d~-----~~g~~YWIIkNSWG~~WGe~ 419 (448)
T PTZ00200 347 GKDVLNKS-LVISPTVVYIAVSRELLKYKSGVYNG-ECGKSLNHAVLLVGEGYDE-----KTKKRYWIIKNSWGTDWGEN 419 (448)
T ss_pred HHHHHHHH-HhcCCEEEEeecccccccCCCCcccc-ccCCCCcEEEEEEEecccC-----CCCCceEEEEcCCCCCcccC
Confidence 44445544 56899999999864 99999999975 5877799999999999541 15789999999999999999
Q ss_pred cEEEEEeC---CCeeccccceeeEEE
Q 017548 341 GYYKICMG---RNVCGVDSMVSSVAA 363 (369)
Q Consensus 341 Gy~~i~~~---~n~cgi~~~~~~~~~ 363 (369)
|||||+|+ .|.|||++.++.+..
T Consensus 420 GY~ri~r~~~g~n~CGI~~~~~~P~~ 445 (448)
T PTZ00200 420 GYMRLERTNEGTDKCGILTVGLTPVF 445 (448)
T ss_pred eeEEEEeCCCCCCcCCccccceeeEE
Confidence 99999996 589999999887654
No 5
>KOG1543 consensus Cysteine proteinase Cathepsin L [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-71 Score=519.16 Aligned_cols=289 Identities=44% Similarity=0.787 Sum_probs=252.9
Q ss_pred HHHhCCccCCHHHHHHHHHHHHHHHHHHHHhcCC-CCCeeeeeccCCCCChHHHHhhhcCCccCCCCCCCCCCCCCCCCC
Q 017548 57 KSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLL-DPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTN 135 (369)
Q Consensus 57 ~~~~~k~Y~~~~e~~~R~~iF~~N~~~I~~~N~~-~~s~~~giN~FaDlt~~Ef~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (369)
+.+|.+.|.+..|...|+.+|.+|++.|..||.. ..+|.+++|+|+|++.+|+++.+.+++++.. ............
T Consensus 30 ~~~~~~~y~~~~~~~~r~~~f~~n~~~~~~~n~~~~~~~~~g~n~~~d~~~ee~~~~~~~~~~~~~--~~~~~~~~~~~~ 107 (325)
T KOG1543|consen 30 LVKFLKRYEDRVEKKARRAIFKENLQKIESHNLKYVLSFLMGVNQFADLTTEEFKRKKTGKKPPEI--KRDKFTEKLDGD 107 (325)
T ss_pred hhhhccccccHHHHHHHHHHHHHHHHHHHhhhhhhceeeeeccccccccchHHHHHhhccccCccc--cccccccccchh
Confidence 5667777777788899999999999999999987 7899999999999999999998887765322 111111122345
Q ss_pred CCCCceeccCCC-CCCcccCCCCCccHHHHHhhhHHHHHHhhhcC-CccccChhHhhhcCCCCCCCCCCCCCCCCCCCCh
Q 017548 136 DLPTDFDWRDHG-AVTGVKDQGACGSCWSFSATGALEGAHFLSTG-ELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLM 213 (369)
Q Consensus 136 ~lP~~~Dwr~~g-~v~pV~dQg~cgsCwAfa~~~~le~~~~~~~~-~~~~lS~q~l~dc~~~~~~~~~~~~~~gC~GG~~ 213 (369)
++|++||||++| .++||||||.||||||||++++||++++|++| ..+.||+|+|+||+.. ++.||+||.+
T Consensus 108 ~~p~s~DwR~~~~~~~~vkdQg~CgsCWAFaa~~aie~~~~i~~g~~l~sLSeq~lvdC~~~--------~~~GC~GG~~ 179 (325)
T KOG1543|consen 108 DLPDSFDWRDKGAVTPPVKDQGSCGSCWAFAATGALEDRYNIKTGGKLLSLSEQDLVDCCGE--------CGDGCNGGEP 179 (325)
T ss_pred hCCCCccccccCCcCCCcCCCCcCcchHHHHHHHHHHHHHHHHhCCccCccChhhhhhccCC--------CCCCcCCCCH
Confidence 899999999996 55669999999999999999999999999999 8999999999999974 4789999999
Q ss_pred HHHHHHHHHcCCcCCCCCcccCCCCCCCccCCCCCceEEeeeeEecCchHHHHHHHHHhcCCeEEEEEccc-ccccCCCe
Q 017548 214 NSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVW-MQTYIGGV 292 (369)
Q Consensus 214 ~~a~~~~~~~~Gi~~e~~yPy~~~~~~~c~~~~~~~~~~i~~~~~~~~~~~~ik~~l~~~gPV~v~~~~~~-f~~y~~Gi 292 (369)
..|++|+.+++++.++++|||.+.. +.|+.+.....+.+.++..++.++++|+.+++.+|||+|+|++.. |+.|++||
T Consensus 180 ~~A~~yi~~~G~~t~~~~Ypy~~~~-~~C~~~~~~~~~~~~~~~~~~~~e~~i~~~v~~~GPv~v~~~a~~~F~~Y~~GV 258 (325)
T KOG1543|consen 180 KNAFKYIKKNGGVTECENYPYIGKD-GTCKSNKKDKTVTIKGFYNVPANEEAIAEAVAKNGPVSVAIDAYEDFSLYKGGV 258 (325)
T ss_pred HHHHHHHHHhCCCCCCcCCCCcCCC-CCccCCCccceeEeeeeeecCcCHHHHHHHHHhcCCeEEEEeehhhhhhccCce
Confidence 9999999999555449999999998 899998876677788888888889999999999999999999987 99999999
Q ss_pred eecCCCCCc-CCeEEEEEEecccCCcCCcCCCCCEEEEEcCCCCCCCCCcEEEEEeCCCeeccccceeeEEE
Q 017548 293 SCPYICGKY-LDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSSVAA 363 (369)
Q Consensus 293 ~~~~~~~~~-~~Hav~iVGyg~~~~~~~~~~~~~ywivkNSWG~~WG~~Gy~~i~~~~n~cgi~~~~~~~~~ 363 (369)
|.++.|... ++|||+|||||.. ++.+|||||||||+.|||+|||||.|+.|.|+|++.++...+
T Consensus 259 y~~~~~~~~~~~Hav~iVGyG~~-------~~~~YWivkNSWG~~WGe~Gy~ri~r~~~~~~I~~~~~~~p~ 323 (325)
T KOG1543|consen 259 YAEEKGDDKEGDHAVLIVGYGTG-------DGVDYWIVKNSWGTDWGEKGYFRIARGVNKCGIASEASYGPI 323 (325)
T ss_pred EeCCCCCCCCCCceEEEEEEcCC-------CCceeEEEEcCCCCCcccCceEEEecCCCchhhhcccccCCC
Confidence 999888874 9999999999983 788999999999999999999999999999999998887443
No 6
>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access. Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc
Probab=100.00 E-value=1.4e-60 Score=436.02 Aligned_cols=212 Identities=34% Similarity=0.690 Sum_probs=183.8
Q ss_pred CCCceeccCCC----CCCcccCCCCCccHHHHHhhhHHHHHHhhhcCC------ccccChhHhhhcCCCCCCCCCCCCCC
Q 017548 137 LPTDFDWRDHG----AVTGVKDQGACGSCWSFSATGALEGAHFLSTGE------LVSLSEQQLVDCDHECDPEESGSCDS 206 (369)
Q Consensus 137 lP~~~Dwr~~g----~v~pV~dQg~cgsCwAfa~~~~le~~~~~~~~~------~~~lS~q~l~dc~~~~~~~~~~~~~~ 206 (369)
||++||||+.+ +|+||||||.||+|||||+++++|+++++++++ .+.||+|+|+||... +.
T Consensus 1 lP~~fDwr~~~~~~~~v~~v~dQg~CGsCwAfa~~~~ies~~~i~~~~~~~~~~~~~lS~q~l~dC~~~---------~~ 71 (243)
T cd02621 1 LPKSFDWGDVNNGFNYVSPVRNQGGCGSCYAFASVYALEARIMIASNKTDPLGQQPILSPQHVLSCSQY---------SQ 71 (243)
T ss_pred CCCcccccccCCCCcccccCCCCCcCccHHHHHHHHHHHHHHHHHhCCCCccccCcccCHHHhhhhcCC---------CC
Confidence 79999999998 999999999999999999999999999998776 688999999999853 68
Q ss_pred CCCCCChHHHHHHHHHcCCcCCCCCcccCC-CCCCCccCCC-CCceEEeeeeEecC-----chHHHHHHHHHhcCCeEEE
Q 017548 207 GCNGGLMNSAFEYILKAGGVEREKDYPYTG-TDGGSCKFDK-SKIAAAVSNFSVIS-----SDEDQMAANLVKHGPLAVG 279 (369)
Q Consensus 207 gC~GG~~~~a~~~~~~~~Gi~~e~~yPy~~-~~~~~c~~~~-~~~~~~i~~~~~~~-----~~~~~ik~~l~~~gPV~v~ 279 (369)
||+||++..|++|+.+. |+++|++|||.. .. +.|+... ....+.++.|..+. .++++||++|+++|||+++
T Consensus 72 GC~GG~~~~a~~~~~~~-Gi~~e~~yPY~~~~~-~~C~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ik~~i~~~GPv~v~ 149 (243)
T cd02621 72 GCDGGFPFLVGKFAEDF-GIVTEDYFPYTADDD-RPCKASPSECRRYYFSDYNYVGGCYGCTNEDEMKWEIYRNGPIVVA 149 (243)
T ss_pred CCCCCCHHHHHHHHHhc-CcCCCceeCCCCCCC-CCCCCCccccccccccceeEcccccccCCHHHHHHHHHHcCCEEEE
Confidence 99999999999999877 899999999998 45 7898654 33344455554442 3788999999999999999
Q ss_pred EEccc-ccccCCCeeecCC----CCC---------cCCeEEEEEEecccCCcCCcCCCCCEEEEEcCCCCCCCCCcEEEE
Q 017548 280 INAVW-MQTYIGGVSCPYI----CGK---------YLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKI 345 (369)
Q Consensus 280 ~~~~~-f~~y~~Gi~~~~~----~~~---------~~~Hav~iVGyg~~~~~~~~~~~~~ywivkNSWG~~WG~~Gy~~i 345 (369)
|++.. |++|++|||.... |+. .++|||+|||||++. .++++|||||||||++|||+|||||
T Consensus 150 ~~~~~~F~~Y~~GIy~~~~~~~~C~~~~~~~~~~~~~~HaV~iVGyg~~~-----~~g~~YWiirNSWG~~WGe~Gy~~i 224 (243)
T cd02621 150 FEVYSDFDFYKEGVYHHTDNDEVSDGDNDNFNPFELTNHAVLLVGWGEDE-----IKGEKYWIVKNSWGSSWGEKGYFKI 224 (243)
T ss_pred EEecccccccCCeEECcCCcccccccccccccCcccCCeEEEEEEeeccC-----CCCCcEEEEEcCCCCCCCcCCeEEE
Confidence 99875 9999999998764 642 379999999999871 0378999999999999999999999
Q ss_pred EeCCCeeccccceeeEEEe
Q 017548 346 CMGRNVCGVDSMVSSVAAI 364 (369)
Q Consensus 346 ~~~~n~cgi~~~~~~~~~~ 364 (369)
+|+.|.|||+++++++.|+
T Consensus 225 ~~~~~~cgi~~~~~~~~~~ 243 (243)
T cd02621 225 RRGTNECGIESQAVFAYPI 243 (243)
T ss_pred ecCCcccCcccceEeeccC
Confidence 9999999999999988764
No 7
>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity. It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.
Probab=100.00 E-value=3.4e-59 Score=425.33 Aligned_cols=209 Identities=33% Similarity=0.668 Sum_probs=182.5
Q ss_pred CCCceeccCCC---CCCcccCCC---CCccHHHHHhhhHHHHHHhhhcC---CccccChhHhhhcCCCCCCCCCCCCCCC
Q 017548 137 LPTDFDWRDHG---AVTGVKDQG---ACGSCWSFSATGALEGAHFLSTG---ELVSLSEQQLVDCDHECDPEESGSCDSG 207 (369)
Q Consensus 137 lP~~~Dwr~~g---~v~pV~dQg---~cgsCwAfa~~~~le~~~~~~~~---~~~~lS~q~l~dc~~~~~~~~~~~~~~g 207 (369)
||++||||+.+ +|+|||||| .||||||||++++||++++++++ ..+.||+|+|+||+. +.|
T Consensus 1 lP~~~Dwr~~~~~~~v~~vk~Qg~~~~CGsCwAfa~~~aies~~~i~~~~~~~~~~lS~Q~lldC~~----------~~g 70 (239)
T cd02698 1 LPKSWDWRNVNGVNYVSPTRNQHIPQYCGSCWAHGSTSALADRINIARKGAWPSVYLSVQVVIDCAG----------GGS 70 (239)
T ss_pred CCCCcccccCCCCcccCccccCCCCCCCCcchHHHhHHHHHHHHHHHHCCCCCCcccCHHHHHhCCC----------CCC
Confidence 69999999988 999999998 89999999999999999998765 357899999999985 579
Q ss_pred CCCCChHHHHHHHHHcCCcCCCCCcccCCCCCCCccCC---------------CCCceEEeeeeEecCchHHHHHHHHHh
Q 017548 208 CNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFD---------------KSKIAAAVSNFSVISSDEDQMAANLVK 272 (369)
Q Consensus 208 C~GG~~~~a~~~~~~~~Gi~~e~~yPy~~~~~~~c~~~---------------~~~~~~~i~~~~~~~~~~~~ik~~l~~ 272 (369)
|+||++..+++|+.++ |+++|++|||.... ..|... +....+.++.|..+. ++++||++|++
T Consensus 71 C~GG~~~~a~~~~~~~-Gl~~e~~yPY~~~~-~~C~~~~~~~~c~~~~~c~~~~~~~~~~i~~~~~~~-~~~~i~~~l~~ 147 (239)
T cd02698 71 CHGGDPGGVYEYAHKH-GIPDETCNPYQAKD-GECNPFNRCGTCNPFGECFAIKNYTLYFVSDYGSVS-GRDKMMAEIYA 147 (239)
T ss_pred ccCcCHHHHHHHHHHc-CcCCCCeeCCcCCC-CCCcCCCCCCCcccCcccccccccceEEeeeceecC-CHHHHHHHHHH
Confidence 9999999999999887 89999999998765 556421 112345677776664 57889999999
Q ss_pred cCCeEEEEEccc-ccccCCCeeecCCCCCcCCeEEEEEEecccCCcCCcCCCCCEEEEEcCCCCCCCCCcEEEEEeCC--
Q 017548 273 HGPLAVGINAVW-MQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-- 349 (369)
Q Consensus 273 ~gPV~v~~~~~~-f~~y~~Gi~~~~~~~~~~~Hav~iVGyg~~~~~~~~~~~~~ywivkNSWG~~WG~~Gy~~i~~~~-- 349 (369)
+|||+++|.+.. |+.|++|||....|...++|||+|||||++. ++++|||||||||++|||+|||||+|+.
T Consensus 148 ~GPV~v~i~~~~~f~~Y~~GIy~~~~~~~~~~HaV~IVGyG~~~------~g~~YWiikNSWG~~WGe~Gy~~i~rg~~~ 221 (239)
T cd02698 148 RGPISCGIMATEALENYTGGVYKEYVQDPLINHIISVAGWGVDE------NGVEYWIVRNSWGEPWGERGWFRIVTSSYK 221 (239)
T ss_pred cCCEEEEEEecccccccCCeEEccCCCCCcCCeEEEEEEEEecC------CCCEEEEEEcCCCcccCcCceEEEEccCCc
Confidence 999999999875 9999999998877766799999999999872 3889999999999999999999999999
Q ss_pred ---CeeccccceeeEEEe
Q 017548 350 ---NVCGVDSMVSSVAAI 364 (369)
Q Consensus 350 ---n~cgi~~~~~~~~~~ 364 (369)
|+||||+.+.++.|+
T Consensus 222 ~~~~~~~i~~~~~~~~~~ 239 (239)
T cd02698 222 GARYNLAIEEDCAWADPI 239 (239)
T ss_pred ccccccccccceEEEeeC
Confidence 999999999988764
No 8
>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane
Probab=100.00 E-value=1.6e-58 Score=420.14 Aligned_cols=206 Identities=35% Similarity=0.707 Sum_probs=174.7
Q ss_pred CCceeccCC--CC--CCcccCCCCCccHHHHHhhhHHHHHHhhhcC--CccccChhHhhhcCCCCCCCCCCCCCCCCCCC
Q 017548 138 PTDFDWRDH--GA--VTGVKDQGACGSCWSFSATGALEGAHFLSTG--ELVSLSEQQLVDCDHECDPEESGSCDSGCNGG 211 (369)
Q Consensus 138 P~~~Dwr~~--g~--v~pV~dQg~cgsCwAfa~~~~le~~~~~~~~--~~~~lS~q~l~dc~~~~~~~~~~~~~~gC~GG 211 (369)
|++||||++ ++ |+||+|||.||+|||||++++||++++++++ +.+.||+|+|+||+.. .+.||+||
T Consensus 1 p~~~DwR~~~~~~~~v~~v~dQg~CGsCwAfa~~~~le~~~~i~~~~~~~~~LS~Q~lidC~~~--------~~~gC~GG 72 (236)
T cd02620 1 PESFDAREKWPNCISIGEIRDQGNCGSCWAFSAVEAFSDRLCIQSNGKENVLLSAQDLLSCCSG--------CGDGCNGG 72 (236)
T ss_pred CCcccchhhCCCCCCccccCCcccchhHHHHHHHHHHhhHHHHhcCCCCccccCHHHHHhhcCC--------CCCCCCCC
Confidence 899999997 45 4599999999999999999999999999887 7789999999999863 36899999
Q ss_pred ChHHHHHHHHHcCCcCCCCCcccCCCCCC-----------------CccCCCC----CceEEeeeeEecCchHHHHHHHH
Q 017548 212 LMNSAFEYILKAGGVEREKDYPYTGTDGG-----------------SCKFDKS----KIAAAVSNFSVISSDEDQMAANL 270 (369)
Q Consensus 212 ~~~~a~~~~~~~~Gi~~e~~yPy~~~~~~-----------------~c~~~~~----~~~~~i~~~~~~~~~~~~ik~~l 270 (369)
++..|++|+.++ |+++|++|||...... .|..... ...+++..+..+..++++||++|
T Consensus 73 ~~~~a~~~i~~~-G~~~e~~yPY~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~l 151 (236)
T cd02620 73 YPDAAWKYLTTT-GVVTGGCQPYTIPPCGHHPEGPPPCCGTPYCTPKCQDGCEKTYEEDKHKGKSAYSVPSDETDIMKEI 151 (236)
T ss_pred CHHHHHHHHHhc-CCCcCCEecCcCCCCccCCCCCCCCCCCCCCCCCCCcCCccccceeeeeecceeeeCCHHHHHHHHH
Confidence 999999999887 8999999999875411 2432221 11234455555656789999999
Q ss_pred HhcCCeEEEEEccc-ccccCCCeeecCCCCCc-CCeEEEEEEecccCCcCCcCCCCCEEEEEcCCCCCCCCCcEEEEEeC
Q 017548 271 VKHGPLAVGINAVW-MQTYIGGVSCPYICGKY-LDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMG 348 (369)
Q Consensus 271 ~~~gPV~v~~~~~~-f~~y~~Gi~~~~~~~~~-~~Hav~iVGyg~~~~~~~~~~~~~ywivkNSWG~~WG~~Gy~~i~~~ 348 (369)
+++|||+++|.+.. |+.|++|||... |... ++|||+|||||++ ++++|||||||||++|||+|||||+|+
T Consensus 152 ~~~GPv~v~i~~~~~f~~Y~~Giy~~~-~~~~~~~HaV~iVGyg~~-------~g~~YWivrNSWG~~WGe~Gy~ri~~~ 223 (236)
T cd02620 152 MTNGPVQAAFTVYEDFLYYKSGVYQHT-SGKQLGGHAVKIIGWGVE-------NGVPYWLAANSWGTDWGENGYFRILRG 223 (236)
T ss_pred HHCCCeEEEEEechhhhhcCCcEEeec-CCCCcCCeEEEEEEEecc-------CCeeEEEEEeCCCCCCCCCcEEEEEcc
Confidence 99999999999854 999999999754 4443 7999999999987 688999999999999999999999999
Q ss_pred CCeeccccceee
Q 017548 349 RNVCGVDSMVSS 360 (369)
Q Consensus 349 ~n~cgi~~~~~~ 360 (369)
.|.|||++.++.
T Consensus 224 ~~~cgi~~~~~~ 235 (236)
T cd02620 224 SNECGIESEVVA 235 (236)
T ss_pred Ccccccccceec
Confidence 999999998874
No 9
>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h
Probab=100.00 E-value=1e-57 Score=408.67 Aligned_cols=206 Identities=52% Similarity=1.023 Sum_probs=187.7
Q ss_pred CCceeccCCCCCCcccCCCCCccHHHHHhhhHHHHHHhhhcCCccccChhHhhhcCCCCCCCCCCCCCCCCCCCChHHHH
Q 017548 138 PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAF 217 (369)
Q Consensus 138 P~~~Dwr~~g~v~pV~dQg~cgsCwAfa~~~~le~~~~~~~~~~~~lS~q~l~dc~~~~~~~~~~~~~~gC~GG~~~~a~ 217 (369)
|++||||+.+.++||+|||.||+|||||++++||++++++++...+||+|+|++|... .+.||.||.+..|+
T Consensus 1 P~~~d~r~~~~~~~v~dQg~cgsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~~c~~~--------~~~gC~GG~~~~a~ 72 (210)
T cd02248 1 PESVDWREKGAVTPVKDQGSCGSCWAFSTVGALEGAYAIKTGKLVSLSEQQLVDCSTS--------GNNGCNGGNPDNAF 72 (210)
T ss_pred CCcccCCcCCCCCCCccCCCCcchHHhHHHHHHHHHHHHHcCCCcccCHHHHhccCCC--------CCCCCCCCCHHHhH
Confidence 7899999999999999999999999999999999999999998899999999999863 36799999999999
Q ss_pred HHHHHcCCcCCCCCcccCCCCCCCccCCCCCceEEeeeeEecCc-hHHHHHHHHHhcCCeEEEEEccc-ccccCCCeeec
Q 017548 218 EYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISS-DEDQMAANLVKHGPLAVGINAVW-MQTYIGGVSCP 295 (369)
Q Consensus 218 ~~~~~~~Gi~~e~~yPy~~~~~~~c~~~~~~~~~~i~~~~~~~~-~~~~ik~~l~~~gPV~v~~~~~~-f~~y~~Gi~~~ 295 (369)
+++.+. |+++|++|||.... ..|+.......+++.+|..+.. +.++||++|+++|||++++.+.. |+.|++|||..
T Consensus 73 ~~~~~~-Gi~~e~~yPY~~~~-~~C~~~~~~~~~~i~~~~~i~~~~~~~ik~~l~~~gPV~~~~~~~~~f~~y~~Giy~~ 150 (210)
T cd02248 73 EYVKNG-GLASESDYPYTGKD-GTCKYNSSKVGAKITGYSNVPPGDEEALKAALANYGPVSVAIDASSSFQFYKGGIYSG 150 (210)
T ss_pred HHHHHC-CcCccccCCccCCC-CCccCCCCcccEEEeeEEEcCCCcHHHHHHHHhhcCCEEEEEecCcccccCCCCceeC
Confidence 988766 99999999999866 7898877677889999998876 58899999999999999999875 99999999988
Q ss_pred CCCC-CcCCeEEEEEEecccCCcCCcCCCCCEEEEEcCCCCCCCCCcEEEEEeCCCeeccccceee
Q 017548 296 YICG-KYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSS 360 (369)
Q Consensus 296 ~~~~-~~~~Hav~iVGyg~~~~~~~~~~~~~ywivkNSWG~~WG~~Gy~~i~~~~n~cgi~~~~~~ 360 (369)
+.|. ..++|||+|||||++ .+++|||||||||++||++|||||+|+.|.|||++.+..
T Consensus 151 ~~~~~~~~~Hav~iVGy~~~-------~~~~ywiv~NSWG~~WG~~Gy~~i~~~~~~cgi~~~~~~ 209 (210)
T cd02248 151 PCCSNTNLNHAVLLVGYGTE-------NGVDYWIVKNSWGTSWGEKGYIRIARGSNLCGIASYASY 209 (210)
T ss_pred CCCCCCcCCEEEEEEEEeec-------CCceEEEEEcCCCCccccCcEEEEEcCCCccCceeeeec
Confidence 7773 448999999999987 578999999999999999999999999999999987653
No 10
>PTZ00049 cathepsin C-like protein; Provisional
Probab=100.00 E-value=3.6e-56 Score=442.34 Aligned_cols=218 Identities=28% Similarity=0.579 Sum_probs=182.7
Q ss_pred CCCCCCceeccCC----CCCCcccCCCCCccHHHHHhhhHHHHHHhhhcCC-----c-----cccChhHhhhcCCCCCCC
Q 017548 134 TNDLPTDFDWRDH----GAVTGVKDQGACGSCWSFSATGALEGAHFLSTGE-----L-----VSLSEQQLVDCDHECDPE 199 (369)
Q Consensus 134 ~~~lP~~~Dwr~~----g~v~pV~dQg~cgsCwAfa~~~~le~~~~~~~~~-----~-----~~lS~q~l~dc~~~~~~~ 199 (369)
...||++||||+. +.++||+|||.||||||||++++||++++|++++ . ..||+|+|+||+..
T Consensus 378 ~~~LP~sfDWRd~~~~~~~vtpVkdQG~CGSCWAFAat~alEsR~~Ia~~~~l~~~~~~~~~~~LS~QqLLDCs~~---- 453 (693)
T PTZ00049 378 IDELPKNFTWGDPFNNNTREYDVTNQLLCGSCYIASQMYAFKRRIEIALTKNLDKKYLNNFDDLLSIQTVLSCSFY---- 453 (693)
T ss_pred cccCCCCEecCcCCCCCCcccCCCCCccCcHHHHHHHHHHHHHHHHHHhccccccccccccccCcCHHHhcccCCC----
Confidence 3589999999984 6799999999999999999999999999998642 1 27999999999863
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHcCCcCCCCCcccCCCCCCCccCCCCC-------------------------------
Q 017548 200 ESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSK------------------------------- 248 (369)
Q Consensus 200 ~~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPy~~~~~~~c~~~~~~------------------------------- 248 (369)
+.||+||++..|++|+.+. ||++|.+|||.+.. +.|+.....
T Consensus 454 -----nqGC~GG~~~~A~kya~~~-GI~tEscYPY~a~~-g~C~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 526 (693)
T PTZ00049 454 -----DQGCNGGFPYLVSKMAKLQ-GIPLDKVFPYTATE-QTCPYQVDQSANSMNGSANLRQINAVFFSSETQSDMHADF 526 (693)
T ss_pred -----CCCcCCCcHHHHHHHHHHC-CCCcCCccCCcCCC-CCCCCCCCCccccccccccccccccccccccccccccccc
Confidence 7899999999999999877 99999999999876 778643111
Q ss_pred --------ceEEeeeeEecC--------chHHHHHHHHHhcCCeEEEEEccc-ccccCCCeeecC------CCCC-----
Q 017548 249 --------IAAAVSNFSVIS--------SDEDQMAANLVKHGPLAVGINAVW-MQTYIGGVSCPY------ICGK----- 300 (369)
Q Consensus 249 --------~~~~i~~~~~~~--------~~~~~ik~~l~~~gPV~v~~~~~~-f~~y~~Gi~~~~------~~~~----- 300 (369)
.++.++.|..+. .++++||++|+++|||+|+|++.. |++|++|||... .|..
T Consensus 527 ~~~~~~~~~r~y~k~y~yI~g~y~~~~~~~E~~Im~eI~~~GPVsVsIda~~dF~~YksGVY~~~~~~h~~~C~~d~~~~ 606 (693)
T PTZ00049 527 EAPISSEPARWYAKDYNYIGGCYGCNQCNGEKIMMNEIYRNGPIVASFEASPDFYDYADGVYYVEDFPHARRCTVDLPKH 606 (693)
T ss_pred cccccccccceeeeeeEEecccccccCCCCHHHHHHHHHhcCCEEEEEEechhhhcCCCccccCcccccccccCCccccc
Confidence 123345555553 368899999999999999999864 999999999753 3632
Q ss_pred ----------cCCeEEEEEEecccCCcCCcCCC--CCEEEEEcCCCCCCCCCcEEEEEeCCCeeccccceeeEEEeccC
Q 017548 301 ----------YLDHGVLIVGYGSSGFAPIRFKE--KPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSSVAAIHTT 367 (369)
Q Consensus 301 ----------~~~Hav~iVGyg~~~~~~~~~~~--~~ywivkNSWG~~WG~~Gy~~i~~~~n~cgi~~~~~~~~~~~~~ 367 (369)
.++|||+|||||.+. .+| .+|||||||||++||++|||||+||.|.|||++.++++.|.++-
T Consensus 607 ~~~~~~~G~e~~NHAVlIVGwG~d~-----enG~~~~YWIVRNSWGt~WGenGYfKI~RG~N~CGIEs~a~~~~pd~~r 680 (693)
T PTZ00049 607 NGVYNITGWEKVNHAIVLVGWGEEE-----INGKLYKYWIGRNSWGKNWGKEGYFKIIRGKNFSGIESQSLFIEPDFSR 680 (693)
T ss_pred cccccccccccCceEEEEEEecccc-----CCCcccCEEEEECCCCCCcccCceEEEEcCCCccCCccceeEEeeeccc
Confidence 269999999999751 134 47999999999999999999999999999999999999998863
No 11
>PTZ00364 dipeptidyl-peptidase I precursor; Provisional
Probab=100.00 E-value=3.3e-56 Score=438.70 Aligned_cols=215 Identities=23% Similarity=0.490 Sum_probs=181.8
Q ss_pred CCCCCceeccCCC---CCCcccCCCC---CccHHHHHhhhHHHHHHhhhc------CCccccChhHhhhcCCCCCCCCCC
Q 017548 135 NDLPTDFDWRDHG---AVTGVKDQGA---CGSCWSFSATGALEGAHFLST------GELVSLSEQQLVDCDHECDPEESG 202 (369)
Q Consensus 135 ~~lP~~~Dwr~~g---~v~pV~dQg~---cgsCwAfa~~~~le~~~~~~~------~~~~~lS~q~l~dc~~~~~~~~~~ 202 (369)
.+||++||||+.| +|+||||||. ||||||||++++||++++|++ ++.+.||+|+|+||+..
T Consensus 203 ~~LP~sfDWR~~gg~~~VtpVrdQg~~~~CGSCWAFAav~alEsr~~I~tn~~~~~g~~~~LS~QqLVDCs~~------- 275 (548)
T PTZ00364 203 DPPPAAWSWGDVGGASFLPAAPPASPGRGCNSSYVEAALAAMMARVMVASNRTDPLGQQTFLSARHVLDCSQY------- 275 (548)
T ss_pred cCCCCccccCcCCCCccCCCCcCCCCCCCCcCHHHHHHHHHHHHHHHHHhCCCcccCcccCcCHHHHhcccCC-------
Confidence 5799999999987 7999999999 999999999999999999987 34688999999999853
Q ss_pred CCCCCCCCCChHHHHHHHHHcCCcCCCCCc--ccCCCCC--CCccCCCCCceEEeeee------EecCchHHHHHHHHHh
Q 017548 203 SCDSGCNGGLMNSAFEYILKAGGVEREKDY--PYTGTDG--GSCKFDKSKIAAAVSNF------SVISSDEDQMAANLVK 272 (369)
Q Consensus 203 ~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~y--Py~~~~~--~~c~~~~~~~~~~i~~~------~~~~~~~~~ik~~l~~ 272 (369)
+.||+||++..|++|+.++ ||++|++| ||.+.+. ..|+.......+.++.+ ..+..++++|+.+|++
T Consensus 276 --n~GCdGG~p~~A~~yi~~~-GI~tE~dY~~PY~~~dg~~~~Ck~~~~~~~y~~~~~~~I~gyy~~~~~e~~I~~eI~~ 352 (548)
T PTZ00364 276 --GQGCAGGFPEEVGKFAETF-GILTTDSYYIPYDSGDGVERACKTRRPSRRYYFTNYGPLGGYYGAVTDPDEIIWEIYR 352 (548)
T ss_pred --CCCCCCCcHHHHHHHHHhC-CcccccccCCCCCCCCCCCCCCCCCcccceeeeeeeEEecceeecCCcHHHHHHHHHH
Confidence 7899999999999999877 99999999 9987651 25886555444444443 3334478899999999
Q ss_pred cCCeEEEEEccc-ccccCCCeeecC--------CC-----------CCcCCeEEEEEEecccCCcCCcCCCCCEEEEEcC
Q 017548 273 HGPLAVGINAVW-MQTYIGGVSCPY--------IC-----------GKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNS 332 (369)
Q Consensus 273 ~gPV~v~~~~~~-f~~y~~Gi~~~~--------~~-----------~~~~~Hav~iVGyg~~~~~~~~~~~~~ywivkNS 332 (369)
+|||+|+|++.. |+.|++|||... .| ...++|||+|||||.+. +|.+|||||||
T Consensus 353 ~GPVsVaIda~~df~~YksGiy~gi~~~~~~~~~~~~~~~~~~~~~~~~~nHAVlIVGYG~de------~G~~YWIVKNS 426 (548)
T PTZ00364 353 HGPVPASVYANSDWYNCDENSTEDVRYVSLDDYSTASADRPLRHYFASNVNHTVLIIGWGTDE------NGGDYWLVLDP 426 (548)
T ss_pred cCCeEEEEEechHHHhcCCCCccCeeccccccccccccCCcccccccccCCeEEEEEEecccC------CCceEEEEECC
Confidence 999999999875 889999997521 12 12379999999999752 57899999999
Q ss_pred CCC--CCCCCcEEEEEeCCCeeccccceeeEEEec
Q 017548 333 WGE--NWGENGYYKICMGRNVCGVDSMVSSVAAIH 365 (369)
Q Consensus 333 WG~--~WG~~Gy~~i~~~~n~cgi~~~~~~~~~~~ 365 (369)
||+ +|||+|||||+||.|+||||+.++++.+++
T Consensus 427 WGt~~~WGE~GYfRI~RG~N~CGIes~~v~~~~~~ 461 (548)
T PTZ00364 427 WGSRRSWCDGGTRKIARGVNAYNIESEVVVMYWAP 461 (548)
T ss_pred CCCCCCcccCCeEEEEcCCCcccccceeeeeeeec
Confidence 999 999999999999999999999999888754
No 12
>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification. ; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A ....
Probab=100.00 E-value=1.9e-55 Score=395.84 Aligned_cols=211 Identities=41% Similarity=0.854 Sum_probs=182.5
Q ss_pred CCCceeccCC-CCCCcccCCCCCccHHHHHhhhHHHHHHhhhc-CCccccChhHhhhcCCCCCCCCCCCCCCCCCCCChH
Q 017548 137 LPTDFDWRDH-GAVTGVKDQGACGSCWSFSATGALEGAHFLST-GELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMN 214 (369)
Q Consensus 137 lP~~~Dwr~~-g~v~pV~dQg~cgsCwAfa~~~~le~~~~~~~-~~~~~lS~q~l~dc~~~~~~~~~~~~~~gC~GG~~~ 214 (369)
||++||||+. +.++||+|||.||+|||||+++++|++++++. ...++||+|+|++|... .+.+|+||++.
T Consensus 1 lP~~~D~r~~~~~~~~v~dQg~~gsCwafa~~~~~e~~~~~~~~~~~~~lS~q~l~~~~~~--------~~~~c~gg~~~ 72 (219)
T PF00112_consen 1 LPKSFDWRDKGGRITPVRDQGSCGSCWAFAAAAALESRLAIQNNGKNVDLSEQYLIDCSNK--------YNKGCDGGSPF 72 (219)
T ss_dssp STSSEEGGGTTTCSG---BTTSSBTHHHHHHHHHHHHHHHHHHTSSCEEB-HHHHHHHSTG--------TSSTTBBBEHH
T ss_pred CCCCEecccCCCCcCccccCCcccccccchhccceeccccccccccccccccccccccccc--------cccccccCccc
Confidence 7999999998 48999999999999999999999999999998 78899999999999972 16699999999
Q ss_pred HHHHHHHHcCCcCCCCCcccCCCCCCCccCCCCCc-eEEeeeeEecCc-hHHHHHHHHHhcCCeEEEEEccc--ccccCC
Q 017548 215 SAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKI-AAAVSNFSVISS-DEDQMAANLVKHGPLAVGINAVW--MQTYIG 290 (369)
Q Consensus 215 ~a~~~~~~~~Gi~~e~~yPy~~~~~~~c~~~~~~~-~~~i~~~~~~~~-~~~~ik~~l~~~gPV~v~~~~~~--f~~y~~ 290 (369)
.|++++.++.|+++|++|||.......|....... ..++..|..+.. +.++||++|+++|||++++.+.. |+.|++
T Consensus 73 ~a~~~~~~~~Gi~~e~~~pY~~~~~~~c~~~~~~~~~~~i~~~~~~~~~~~~~ik~~L~~~gpV~~~~~~~~~~f~~~~~ 152 (219)
T PF00112_consen 73 DALKYIKNNNGIVTEEDYPYNGNENPTCKSKKSNSYYVKIKGYGKVKDNDIEDIKKALMKYGPVVASIDVSSEDFQNYKS 152 (219)
T ss_dssp HHHHHHHHHTSBEBTTTS--SSSSSCSSCHSGGGEEEBEESEEEEEESTCHHHHHHHHHHHSSEEEEEEEESHHHHTEES
T ss_pred ccceeecccCcccccccccccccccccccccccccccccccccccccccchhHHHHHHhhCceeeeeeeccccccccccc
Confidence 99999998449999999999986645788765443 478888888876 59999999999999999998766 889999
Q ss_pred CeeecCCCCC-cCCeEEEEEEecccCCcCCcCCCCCEEEEEcCCCCCCCCCcEEEEEeCCC-eeccccceeeEE
Q 017548 291 GVSCPYICGK-YLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRN-VCGVDSMVSSVA 362 (369)
Q Consensus 291 Gi~~~~~~~~-~~~Hav~iVGyg~~~~~~~~~~~~~ywivkNSWG~~WG~~Gy~~i~~~~n-~cgi~~~~~~~~ 362 (369)
|||.++.|.. .++|||+|||||++ .+++|||||||||++||++|||||+|+.+ +|||++.++++.
T Consensus 153 gi~~~~~~~~~~~~Hav~iVGy~~~-------~~~~~wiv~NSWG~~WG~~Gy~~i~~~~~~~c~i~~~~~~~~ 219 (219)
T PF00112_consen 153 GIYDPPDCSNESGGHAVLIVGYDDE-------NGKGYWIVKNSWGTDWGDNGYFRISYDYNNECGIESQAVYPI 219 (219)
T ss_dssp SEECSTSSSSSSEEEEEEEEEEEEE-------TTEEEEEEE-SBTTTSTBTTEEEEESSSSSGGGTTSSEEEEE
T ss_pred eeeeccccccccccccccccccccc-------cceeeEeeehhhCCccCCCeEEEEeeCCCCcCccCceeeecC
Confidence 9999888875 58999999999998 68999999999999999999999999987 999999999864
No 13
>smart00645 Pept_C1 Papain family cysteine protease.
Probab=100.00 E-value=2.9e-51 Score=355.28 Aligned_cols=170 Identities=61% Similarity=1.122 Sum_probs=151.6
Q ss_pred CCCceeccCCCCCCcccCCCCCccHHHHHhhhHHHHHHhhhcCCccccChhHhhhcCCCCCCCCCCCCCCCCCCCChHHH
Q 017548 137 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSA 216 (369)
Q Consensus 137 lP~~~Dwr~~g~v~pV~dQg~cgsCwAfa~~~~le~~~~~~~~~~~~lS~q~l~dc~~~~~~~~~~~~~~gC~GG~~~~a 216 (369)
||++||||+.++++||+|||.||+|||||+++++|+++++++++.++||+|+|++|... .+.||+||.+..|
T Consensus 1 lP~~~D~R~~~~~~~v~dQg~CGsCwAfa~~~~ie~~~~i~~~~~~~lS~q~l~~C~~~--------~~~gC~GG~~~~a 72 (174)
T smart00645 1 LPESFDWRKKGAVTPVKDQGQCGSCWAFSATGALEGRYCIKTGKLVSLSEQQLVDCSTG--------GNNGCNGGLPDNA 72 (174)
T ss_pred CCCcCcccccCCCCccccCcccchHHHHHHHHHHHHHHHHhcCCccccCHHHHhhhcCC--------CCCCCCCcCHHHH
Confidence 69999999999999999999999999999999999999999998999999999999863 2569999999999
Q ss_pred HHHHHHcCCcCCCCCcccCCCCCCCccCCCCCceEEeeeeEecCchHHHHHHHHHhcCCeEEEEEcccccccCCCeeecC
Q 017548 217 FEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVWMQTYIGGVSCPY 296 (369)
Q Consensus 217 ~~~~~~~~Gi~~e~~yPy~~~~~~~c~~~~~~~~~~i~~~~~~~~~~~~ik~~l~~~gPV~v~~~~~~f~~y~~Gi~~~~ 296 (369)
++|+.+++|+++|++|||.. ++.+.+..|+.|++|||...
T Consensus 73 ~~~~~~~~Gi~~e~~~PY~~----------------------------------------~~~~~~~~f~~Y~~Gi~~~~ 112 (174)
T smart00645 73 FEYIKKNGGLETESCYPYTG----------------------------------------SVAIDASDFQFYKSGIYDHP 112 (174)
T ss_pred HHHHHHcCCcccccccCccc----------------------------------------EEEEEcccccCCcCeEECCC
Confidence 99998876899999999964 45555555999999999877
Q ss_pred CCCCc-CCeEEEEEEecccCCcCCcCCCCCEEEEEcCCCCCCCCCcEEEEEeCC-Ceeccccceee
Q 017548 297 ICGKY-LDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVSS 360 (369)
Q Consensus 297 ~~~~~-~~Hav~iVGyg~~~~~~~~~~~~~ywivkNSWG~~WG~~Gy~~i~~~~-n~cgi~~~~~~ 360 (369)
.|... ++|+|+|||||.+. ++++|||||||||+.|||+|||||.|+. |.|||+.....
T Consensus 113 ~~~~~~~~Hav~ivGyg~~~------~g~~yWii~NSwG~~WG~~G~~~i~~~~~~~c~i~~~~~~ 172 (174)
T smart00645 113 GCGSGTLDHAVLIVGYGTEE------NGKDYWIVKNSWGTDWGENGYFRIARGKNNECGIEASVAS 172 (174)
T ss_pred CCCCCcccEEEEEEEEeecC------CCeeEEEEECCCCCCcccCeEEEEEcCCCCccCceeeeee
Confidence 78655 79999999999752 5788999999999999999999999998 99999876643
No 14
>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str
Probab=100.00 E-value=4e-47 Score=342.49 Aligned_cols=198 Identities=30% Similarity=0.523 Sum_probs=165.0
Q ss_pred ceeccCCCCCCcccCCCCCccHHHHHhhhHHHHHHhhhcC--CccccChhHhhhcCCCCCCCCCCCCCCCCCCCChHHHH
Q 017548 140 DFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTG--ELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAF 217 (369)
Q Consensus 140 ~~Dwr~~g~v~pV~dQg~cgsCwAfa~~~~le~~~~~~~~--~~~~lS~q~l~dc~~~~~~~~~~~~~~gC~GG~~~~a~ 217 (369)
.+|||+.+ ++||+|||.||+|||||+++++|++++++.+ +.++||+|+|++|...... ....||.||.+..++
T Consensus 1 ~~d~r~~~-~~~v~dQg~~gsCwafa~~~~les~~~~~~~~~~~~~lS~q~l~~c~~~~~~----~~~~~c~gG~~~~~~ 75 (223)
T cd02619 1 SVDLRPLR-LTPVKNQGSRGSCWAFASAYALESAYRIKGGEDEYVDLSPQYLYICANDECL----GINGSCDGGGPLSAL 75 (223)
T ss_pred CCcchhcC-CCCcccCCCCcCcHHHHHHHHHHHHHHHhcCCcccccCCHHHHHHhcccccc----ccCCCCCCCcHHHHH
Confidence 48999998 9999999999999999999999999999987 8899999999999864110 014799999999999
Q ss_pred H-HHHHcCCcCCCCCcccCCCCCCCccC----CCCCceEEeeeeEecCc-hHHHHHHHHHhcCCeEEEEEccc-ccccCC
Q 017548 218 E-YILKAGGVEREKDYPYTGTDGGSCKF----DKSKIAAAVSNFSVISS-DEDQMAANLVKHGPLAVGINAVW-MQTYIG 290 (369)
Q Consensus 218 ~-~~~~~~Gi~~e~~yPy~~~~~~~c~~----~~~~~~~~i~~~~~~~~-~~~~ik~~l~~~gPV~v~~~~~~-f~~y~~ 290 (369)
. ++.+. |+++|++|||.... ..|.. .......++..|..+.. ++++||++|.++|||++++.+.. |..|++
T Consensus 76 ~~~~~~~-Gi~~e~~~Py~~~~-~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ik~aL~~~gPv~~~~~~~~~~~~~~~ 153 (223)
T cd02619 76 LKLVALK-GIPPEEDYPYGAES-DGEEPKSEAALNAAKVKLKDYRRVLKNNIEDIKEALAKGGPVVAGFDVYSGFDRLKE 153 (223)
T ss_pred HHHHHHc-CCCccccCCCCCCC-CCCCCCCccchhhcceeecceeEeCchhHHHHHHHHHHCCCEEEEEEcccchhcccC
Confidence 8 66555 99999999999876 55543 23444577888888866 58999999999999999999876 889999
Q ss_pred Ceee-----cCCCCC-cCCeEEEEEEecccCCcCCcCCCCCEEEEEcCCCCCCCCCcEEEEEeCC
Q 017548 291 GVSC-----PYICGK-YLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR 349 (369)
Q Consensus 291 Gi~~-----~~~~~~-~~~Hav~iVGyg~~~~~~~~~~~~~ywivkNSWG~~WG~~Gy~~i~~~~ 349 (369)
|++. ...|.. .++|||+|||||++.. .+++|||||||||+.||++||+||+++.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~Hav~ivGy~~~~~-----~~~~~~i~~NSwG~~wg~~Gy~~i~~~~ 213 (223)
T cd02619 154 GIIYEEIVYLLYEDGDLGGHAVVIVGYDDNYV-----EGKGAFIVKNSWGTDWGDNGYGRISYED 213 (223)
T ss_pred ccccccccccccCCCccCCeEEEEEeecCCCC-----CCCCEEEEEeCCCCccccCCEEEEehhh
Confidence 9862 223333 3899999999998720 2789999999999999999999999974
No 15
>PTZ00462 Serine-repeat antigen protein; Provisional
Probab=100.00 E-value=3.8e-47 Score=387.72 Aligned_cols=208 Identities=26% Similarity=0.484 Sum_probs=166.3
Q ss_pred CCcccCCCCCccHHHHHhhhHHHHHHhhhcCCccccChhHhhhcCCCCCCCCCCCCCCCCCCCC-hHHHHHHHHHcCCcC
Q 017548 149 VTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGL-MNSAFEYILKAGGVE 227 (369)
Q Consensus 149 v~pV~dQg~cgsCwAfa~~~~le~~~~~~~~~~~~lS~q~l~dc~~~~~~~~~~~~~~gC~GG~-~~~a~~~~~~~~Gi~ 227 (369)
..||||||.||+|||||+++++|+++++++++.+.||+|+|+||+.. ..+.||.||+ +..++.|+.+++|++
T Consensus 544 ~i~VKDQG~CGSCWAFASaaaLES~~cIkgg~~v~LSeQqLVDCs~~-------~gn~GC~GG~~~~efl~yI~e~GgLp 616 (1004)
T PTZ00462 544 KIQIEDQGNCAISWIFASKYHLETIKCMKGYEPHAISALYIANCSKG-------EHKDRCDEGSNPLEFLQIIEDNGFLP 616 (1004)
T ss_pred CCCcccCCcchHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHhcccc-------cCCCCCCCCCcHHHHHHHHHHcCCCc
Confidence 57999999999999999999999999999999999999999999864 2367999997 445668888887799
Q ss_pred CCCCcccCCC-CCCCccCCCCC------------------ceEEeeeeEecCch---------HHHHHHHHHhcCCeEEE
Q 017548 228 REKDYPYTGT-DGGSCKFDKSK------------------IAAAVSNFSVISSD---------EDQMAANLVKHGPLAVG 279 (369)
Q Consensus 228 ~e~~yPy~~~-~~~~c~~~~~~------------------~~~~i~~~~~~~~~---------~~~ik~~l~~~gPV~v~ 279 (369)
+|.+|||... ..+.|+..... ....+.+|..+... ++.|+++|+.+|||+|+
T Consensus 617 tESdYPYt~k~~~g~Cp~~~~~w~n~~~~~kll~~~~~~~~~i~~kgY~~~~s~~~~~n~d~~i~~IK~eI~~kGPVaV~ 696 (1004)
T PTZ00462 617 ADSNYLYNYTKVGEDCPDEEDHWMNLLDHGKILNHNKKEPNSLDGKAYRAYESEHFHDKMDAFIKIIKDEIMNKGSVIAY 696 (1004)
T ss_pred ccccCCCccCCCCCCCCCCcccccccccccccccccccccceeeccceEEecccccccchhhHHHHHHHHHHhcCCEEEE
Confidence 9999999852 22678743210 12233455554321 46899999999999999
Q ss_pred EEccccccc-CCCeeecCCCCCc-CCeEEEEEEecccCCcCCcCCCCCEEEEEcCCCCCCCCCcEEEEEe-CCCeecccc
Q 017548 280 INAVWMQTY-IGGVSCPYICGKY-LDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICM-GRNVCGVDS 356 (369)
Q Consensus 280 ~~~~~f~~y-~~Gi~~~~~~~~~-~~Hav~iVGyg~~~~~~~~~~~~~ywivkNSWG~~WG~~Gy~~i~~-~~n~cgi~~ 356 (369)
|++..|+.| .+|||....|+.. ++|||+|||||.+.. ....+++|||||||||+.|||+|||||.| |.|+|||..
T Consensus 697 IdAsdf~~Y~~sGIyv~~~Cgs~~~nHAVlIVGYGt~in--~eg~gk~YWIVRNSWGt~WGEnGYFKI~r~g~n~CGin~ 774 (1004)
T PTZ00462 697 IKAENVLGYEFNGKKVQNLCGDDTADHAVNIVGYGNYIN--DEDEKKSYWIVRNSWGKYWGDEGYFKVDMYGPSHCEDNF 774 (1004)
T ss_pred EEeehHHhhhcCCccccCCCCCCcCCceEEEEEeccccc--ccCCCCceEEEEcCCCCCcCCCeEEEEEeCCCCCCccch
Confidence 998677777 5899877779754 899999999997410 01136789999999999999999999998 689999999
Q ss_pred ceeeEEEec
Q 017548 357 MVSSVAAIH 365 (369)
Q Consensus 357 ~~~~~~~~~ 365 (369)
...++..-+
T Consensus 775 i~t~~~fn~ 783 (1004)
T PTZ00462 775 IHSVVIFNI 783 (1004)
T ss_pred heeeeeEee
Confidence 888877654
No 16
>KOG1544 consensus Predicted cysteine proteinase TIN-ag [General function prediction only]
Probab=100.00 E-value=1.8e-45 Score=328.77 Aligned_cols=273 Identities=25% Similarity=0.429 Sum_probs=206.3
Q ss_pred HHHhcCCCCCeeee-eccCCCCChHHHHhhhcCCccCC-CCCCCC-CCCCCCCCCCCCCceeccCC--CCCCcccCCCCC
Q 017548 84 AKRRQLLDPTAVHG-VTKFSDLTPSEFRRQFLGLNRRL-RLPADA-QKAPILPTNDLPTDFDWRDH--GAVTGVKDQGAC 158 (369)
Q Consensus 84 I~~~N~~~~s~~~g-iN~FaDlt~~Ef~~~~~~~~~~~-~~~~~~-~~~~~~~~~~lP~~~Dwr~~--g~v~pV~dQg~c 158 (369)
|+..|.-+-+++.+ ..+|..+|-++=.+..+|.-++. ...... ..+...+..+||+.|+.|++ +++.|+-|||+|
T Consensus 153 iE~in~G~YgW~A~NYSaFWGmtL~DGiKyRLGTL~Ps~sv~nMNEi~~~l~p~~~LPE~F~As~KWp~liH~plDQgnC 232 (470)
T KOG1544|consen 153 IEAINQGNYGWQAGNYSAFWGMTLDDGIKYRLGTLRPSSSVMNMNEIYTVLNPGEVLPEAFEASEKWPNLIHEPLDQGNC 232 (470)
T ss_pred HHHHhcCCccccccchhhhhcccccccceeeecccCchhhhhhHHhHhhccCcccccchhhhhhhcCCccccCccccCCc
Confidence 44444444444433 12677777776555555543321 111110 11123345799999999997 899999999999
Q ss_pred ccHHHHHhhhHHHHHHhhhcCC--ccccChhHhhhcCCCCCCCCCCCCCCCCCCCChHHHHHHHHHcCCcCCCCCcccCC
Q 017548 159 GSCWSFSATGALEGAHFLSTGE--LVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTG 236 (369)
Q Consensus 159 gsCwAfa~~~~le~~~~~~~~~--~~~lS~q~l~dc~~~~~~~~~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPy~~ 236 (369)
++.|||+++++...+++|.+.. ...||+|+|++|... ...||+||....|+=|+.+. |++...+|||.+
T Consensus 233 a~SWafSTaavasDRiAI~S~GR~t~~LSpQnLlSC~~h--------~q~GC~gG~lDRAWWYlRKr-GvVsdhCYP~~~ 303 (470)
T KOG1544|consen 233 AGSWAFSTAAVASDRVAIHSLGRMTPVLSPQNLLSCDTH--------QQQGCRGGRLDRAWWYLRKR-GVVSDHCYPFSG 303 (470)
T ss_pred ccceeeeeehhccceeEEeeccccccccChHHhcchhhh--------hhccCccCcccchheeeecc-cccccccccccC
Confidence 9999999999999999998643 357999999999864 37899999999999999777 999999999975
Q ss_pred CC---CCCcc------------------CC--CCCceEEeeeeEecCchHHHHHHHHHhcCCeEEEEEccc-ccccCCCe
Q 017548 237 TD---GGSCK------------------FD--KSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVW-MQTYIGGV 292 (369)
Q Consensus 237 ~~---~~~c~------------------~~--~~~~~~~i~~~~~~~~~~~~ik~~l~~~gPV~v~~~~~~-f~~y~~Gi 292 (369)
.+ ++.|. .. .....++++.-..|++++++|+++|+.+|||.+.|.+-. |..|++||
T Consensus 304 dQ~~~~~~C~m~sR~~grgkRqat~~CPn~~~~Sn~iyq~tPPYrVSSnE~eImkElM~NGPVQA~m~VHEDFF~YkgGi 383 (470)
T KOG1544|consen 304 DQAGPAPPCMMHSRAMGRGKRQATAHCPNSYVNSNDIYQVTPPYRVSSNEKEIMKELMENGPVQALMEVHEDFFLYKGGI 383 (470)
T ss_pred CCCCCCCCceeeccccCcccccccCcCCCcccccCceeeecCCeeccCCHHHHHHHHHhCCChhhhhhhhhhhhhhccce
Confidence 32 23343 21 122346666666778899999999999999998887765 88999999
Q ss_pred eecCCCC--------CcCCeEEEEEEecccCCcCCcCCCCCEEEEEcCCCCCCCCCcEEEEEeCCCeeccccceeeEEEe
Q 017548 293 SCPYICG--------KYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSSVAAI 364 (369)
Q Consensus 293 ~~~~~~~--------~~~~Hav~iVGyg~~~~~~~~~~~~~ywivkNSWG~~WG~~Gy~~i~~~~n~cgi~~~~~~~~~~ 364 (369)
|...+-. ..+.|+|.|.|||++... +....+|||..||||+.|||+|||||.||.|+|.||++++++..+
T Consensus 384 Y~H~~~~~~~~e~yr~~gtHsVk~tGWG~~~~~--~G~~~KyW~aANSWG~~WGE~GYFriLRGvNecdIEsfvIgAWGr 461 (470)
T KOG1544|consen 384 YSHTPVSLGRPERYRRHGTHSVKITGWGEETLP--DGRTLKYWTAANSWGPAWGERGYFRILRGVNECDIESFVIGAWGR 461 (470)
T ss_pred eeccccccCCchhhhhcccceEEEeecccccCC--CCCeeEEEEeecccccccccCceEEEeccccchhhhHhhhhhhhc
Confidence 9764432 127899999999987321 123357999999999999999999999999999999999999987
Q ss_pred ccC
Q 017548 365 HTT 367 (369)
Q Consensus 365 ~~~ 367 (369)
++-
T Consensus 462 ~~m 464 (470)
T KOG1544|consen 462 VGM 464 (470)
T ss_pred ccc
Confidence 753
No 17
>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4e-31 Score=242.84 Aligned_cols=211 Identities=30% Similarity=0.393 Sum_probs=136.4
Q ss_pred CCCCCceeccCCCCCCcccCCCCCccHHHHHhhhHHHHHHhhhcCCccccChhHhhhcCCCCCCCCCCCCCCC-CCCCCh
Q 017548 135 NDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSG-CNGGLM 213 (369)
Q Consensus 135 ~~lP~~~Dwr~~g~v~pV~dQg~cgsCwAfa~~~~le~~~~~~~~~~~~lS~q~l~dc~~~~~~~~~~~~~~g-C~GG~~ 213 (369)
..+|+.||||+.|.|+||||||.||+||||++++++|+.+.-.. ...+|+-.+..-....... ....+ -+||..
T Consensus 97 ~s~~~~fd~r~~g~vs~v~dQg~~Gscwaf~t~~sles~l~~~~--~w~~s~~nm~~ll~~~ye~---~fd~~~~d~g~~ 171 (372)
T COG4870 97 ASLPSYFDRRDEGKVSPVKDQGSGGSCWAFATTRSLESYLNPES--AWDFSENNMKNLLGVPYEK---GFDYTSNDGGNA 171 (372)
T ss_pred ccchhheeeeccCCcccccccCcccceEeeeehhhhhheecccc--cccccccchhhhcCCCccc---cCCCccccCCcc
Confidence 35899999999999999999999999999999999998764433 3445554443221110000 01111 237777
Q ss_pred HHHHHHHHHcCCcCCCCCcccCCCCCCCccCCCCCceEEeeeeEecCc-----hHHHHHHHHHhcCCeEEEE--Eccccc
Q 017548 214 NSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISS-----DEDQMAANLVKHGPLAVGI--NAVWMQ 286 (369)
Q Consensus 214 ~~a~~~~~~~~Gi~~e~~yPy~~~~~~~c~~~~~~~~~~i~~~~~~~~-----~~~~ik~~l~~~gPV~v~~--~~~~f~ 286 (369)
..+..|+.+..|.+.+.+-||.... -.|...... ..++..-..++. +...|++++..+|-+...| ++..+.
T Consensus 172 ~m~~a~l~e~sgpv~et~d~y~~~s-~~~~~~~p~-~k~~~~~~~i~~~~~~LdnG~i~~~~~~yg~~s~~~~id~~~~~ 249 (372)
T COG4870 172 DMSAAYLTEWSGPVYETDDPYSENS-YFSPTNLPV-TKHVQEAQIIPSRKKYLDNGNIKAMFGFYGAVSSSMYIDATNSL 249 (372)
T ss_pred ccccccccccCCcchhhcCcccccc-ccCCcCCch-hhccccceecccchhhhcccchHHHHhhhccccceeEEeccccc
Confidence 7788888888999999999998765 444331110 111112222222 3455888888888776444 433322
Q ss_pred ccCCCeeecCCCCCcCCeEEEEEEecccCCc---CCcCCCCCEEEEEcCCCCCCCCCcEEEEEeCCCeec
Q 017548 287 TYIGGVSCPYICGKYLDHGVLIVGYGSSGFA---PIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCG 353 (369)
Q Consensus 287 ~y~~Gi~~~~~~~~~~~Hav~iVGyg~~~~~---~~~~~~~~ywivkNSWG~~WG~~Gy~~i~~~~n~cg 353 (369)
...-+.+.+..- ...+|||+||||+|.... .-.+.|.+.||||||||++||++|||||++..-.-|
T Consensus 250 ~~~~~~~~~~s~-~~~gHAv~iVGyDDs~~~n~~~~~~~g~GAfiikNSWGt~wG~~GYfwisY~ya~~g 318 (372)
T COG4870 250 GICIPYPYVDSG-ENWGHAVLIVGYDDSFDINNFKYGPPGDGAFIIKNSWGTNWGENGYFWISYYYALNG 318 (372)
T ss_pred ccccCCCCCCcc-ccccceEEEEeccccccccccccCCCCCceEEEECccccccccCceEEEEeeecccc
Confidence 222233322211 448999999999987321 113456789999999999999999999999753333
No 18
>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC). The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w
Probab=99.92 E-value=1.5e-24 Score=210.09 Aligned_cols=188 Identities=21% Similarity=0.331 Sum_probs=131.8
Q ss_pred CcccCCCCCccHHHHHhhhHHHHHHhhh-cCCccccChhHhhh----------------cCCCCCCCCC-----CCCCCC
Q 017548 150 TGVKDQGACGSCWSFSATGALEGAHFLS-TGELVSLSEQQLVD----------------CDHECDPEES-----GSCDSG 207 (369)
Q Consensus 150 ~pV~dQg~cgsCwAfa~~~~le~~~~~~-~~~~~~lS~q~l~d----------------c~~~~~~~~~-----~~~~~g 207 (369)
.||+||+.-|.||.||+...||+.+..+ ..+.++||+.+++. +... +... -....-
T Consensus 55 ~~vtnQ~~SGrCW~FA~Ln~lr~~~~k~~~~~~felSq~Yl~f~dklEkaN~fle~ii~~~~~--~~~~R~v~~ll~~~~ 132 (437)
T cd00585 55 EPVTNQKSSGRCWLFAALNVLRHQFMKKLNLKEFEFSQSYLFFWDKLEKANYFLENIIETADE--PLDDRLVQFLLANPQ 132 (437)
T ss_pred CCcccCCCCchhHHHHCHHHHHHHHHHHcCCCCEEeCcHHHHHHHHHHHHHHHHHHHHHHhcC--CCccHHHHHHHhCCc
Confidence 4899999999999999999999988764 56689999988754 2211 0000 001445
Q ss_pred CCCCChHHHHHHHHHcCCcCCCCCcccCCCC--------------------------CC---------------------
Q 017548 208 CNGGLMNSAFEYILKAGGVEREKDYPYTGTD--------------------------GG--------------------- 240 (369)
Q Consensus 208 C~GG~~~~a~~~~~~~~Gi~~e~~yPy~~~~--------------------------~~--------------------- 240 (369)
.+||....+...+.++ |+++.+.||-+... .+
T Consensus 133 ~DGGqw~m~~~li~KY-GvVPk~~~pet~~s~~t~~~n~~L~~kLr~~a~~lr~~~~~~~~~~~l~~~~~~~~~~iy~il 211 (437)
T cd00585 133 NDGGQWDMLVNLIEKY-GLVPKSVMPESFNSENSRRLNYLLNRKLREDALELRKLVAKGASKEEIEAKKEEMLKEVYRIL 211 (437)
T ss_pred CCCCchHHHHHHHHHc-CCCcccccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHH
Confidence 6899999999998877 99999999853110 00
Q ss_pred -----C---------------------------------ccC--------CCC--Cc---eEEe-----------eeeEe
Q 017548 241 -----S---------------------------------CKF--------DKS--KI---AAAV-----------SNFSV 258 (369)
Q Consensus 241 -----~---------------------------------c~~--------~~~--~~---~~~i-----------~~~~~ 258 (369)
. |.. .+. .+ .+.+ ..|.+
T Consensus 212 ~~~lG~pP~~F~~~y~dkd~~~~~~~~~TP~~F~~~yv~~~~~dyV~l~~~p~~~~p~~~~y~ve~~~Nv~~g~~~~y~N 291 (437)
T cd00585 212 AIALGEPPEKFDWEYRDKDKKYHEIKELTPLEFYKKYVKFDLDDYVSLINDPRPDKPYNKLYTVEYLGNVVGGRPILYLN 291 (437)
T ss_pred HHHcCCCCceEEEEEEeCCCCeeeCCCcCHHHHHHHhcCCCccceEEEEeCCCCCCCCCceEEEecCCcccccccceEEe
Confidence 0 000 000 00 0111 12223
Q ss_pred cCchHHHHH----HHHHhcCCeEEEEEcccccccCCCeeecC---------------------CCCCcCCeEEEEEEecc
Q 017548 259 ISSDEDQMA----ANLVKHGPLAVGINAVWMQTYIGGVSCPY---------------------ICGKYLDHGVLIVGYGS 313 (369)
Q Consensus 259 ~~~~~~~ik----~~l~~~gPV~v~~~~~~f~~y~~Gi~~~~---------------------~~~~~~~Hav~iVGyg~ 313 (369)
++ .++++ ++|..++||.+++++..|..|++||+.+. .|.+..+|||+|||||.
T Consensus 292 vp--~d~l~~~~~~~L~~g~pV~~g~Dv~~~~~~k~GI~d~~~~~~~~~f~~~~~~~KaeRl~~~es~~tHAM~ivGv~~ 369 (437)
T cd00585 292 VP--MDVLKKAAIAQLKDGEPVWFGCDVGKFSDRKSGILDTDLFDYELLFGIDFGLNKAERLDYGESLMTHAMVLTGVDL 369 (437)
T ss_pred cC--HHHHHHHHHHHHhcCCCEEEEEEcChhhccCCccccCcccchhhhcCccccCCHHHHHhhcCCcCCeEEEEEEEEe
Confidence 32 34444 67778889999999988779999999653 23344799999999997
Q ss_pred cCCcCCcCCCC-CEEEEEcCCCCCCCCCcEEEEEeC
Q 017548 314 SGFAPIRFKEK-PYWIIKNSWGENWGENGYYKICMG 348 (369)
Q Consensus 314 ~~~~~~~~~~~-~ywivkNSWG~~WG~~Gy~~i~~~ 348 (369)
+. +|+ .||+||||||+.||++||++|+++
T Consensus 370 D~------~g~p~yw~VkNSWG~~~G~~Gy~~ms~~ 399 (437)
T cd00585 370 DE------DGKPVKWKVENSWGEKVGKKGYFVMSDD 399 (437)
T ss_pred cC------CCCcceEEEEcccCCCCCCCcceehhHH
Confidence 62 465 599999999999999999999985
No 19
>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....
Probab=99.75 E-value=2.2e-17 Score=160.33 Aligned_cols=190 Identities=24% Similarity=0.346 Sum_probs=110.4
Q ss_pred CcccCCCCCccHHHHHhhhHHHHHHhhhcC-CccccChhHhh----------------hcCCCCCCCCC-----CCCCCC
Q 017548 150 TGVKDQGACGSCWSFSATGALEGAHFLSTG-ELVSLSEQQLV----------------DCDHECDPEES-----GSCDSG 207 (369)
Q Consensus 150 ~pV~dQg~cgsCwAfa~~~~le~~~~~~~~-~~~~lS~q~l~----------------dc~~~~~~~~~-----~~~~~g 207 (369)
.||.||..-|.||.||+...++..+..+.+ +.++||+-++. ++.... ... -.....
T Consensus 56 ~~vtnQk~SGRCW~FA~lN~lR~~~~kk~~l~~felSq~Yl~F~DKlEKaN~fLe~ii~~~~~~--~d~R~v~~ll~~~~ 133 (438)
T PF03051_consen 56 GPVTNQKSSGRCWLFAALNVLRHEIMKKLNLKDFELSQNYLFFWDKLEKANYFLENIIDTADEP--LDDRLVRFLLKNPV 133 (438)
T ss_dssp -S--B--BSSTHHHHHHHHHHHHHHHHHCT-SS--B-HHHHHHHHHHHHHHHHHHHHHHCCTS---TTSHHHHHHHHSTT
T ss_pred CCCCCCCCCCCcchhhchHHHHHHHHHHcCCCceEeechHHHHHHHHHHHHHHHHHHHHHhcCC--cchHHHHHHHhcCC
Confidence 499999999999999999999999887665 67999998864 333210 000 000234
Q ss_pred CCCCChHHHHHHHHHcCCcCCCCCcccCCCC----------------------------C--------------------
Q 017548 208 CNGGLMNSAFEYILKAGGVEREKDYPYTGTD----------------------------G-------------------- 239 (369)
Q Consensus 208 C~GG~~~~a~~~~~~~~Gi~~e~~yPy~~~~----------------------------~-------------------- 239 (369)
.+||....+...+.++ |+|+.+.||-+... .
T Consensus 134 ~DGGqw~~~~nli~KY-GvVPk~~mpet~~s~~t~~~n~~l~~~Lr~~a~~LR~~~~~~~~~~~l~~~k~~~l~~iy~il 212 (438)
T PF03051_consen 134 SDGGQWDMVVNLIKKY-GVVPKSVMPETFSSSNTSEMNEMLNTKLREYALELRKLVKAGKSEEELRKLKEEMLAEIYRIL 212 (438)
T ss_dssp -S-B-HHHHHHHHHHH----BGGGSTTGCGCHBHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHc-CcCcHhhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 6899999999888877 99999999864211 0
Q ss_pred ----CCcc--C-----CCCC---------------------------------------ceEEe-----------eeeEe
Q 017548 240 ----GSCK--F-----DKSK---------------------------------------IAAAV-----------SNFSV 258 (369)
Q Consensus 240 ----~~c~--~-----~~~~---------------------------------------~~~~i-----------~~~~~ 258 (369)
|.++ + +..+ ..+.+ ..|.+
T Consensus 213 ~~~lG~PP~~F~~ey~dkd~~~~~~~~~TP~eF~~kyv~~~~ddyVsLin~P~~~~py~~~y~ve~~~Nv~~g~~~~ylN 292 (438)
T PF03051_consen 213 AIYLGEPPEKFTWEYRDKDKKYHRGKNYTPLEFYKKYVGFDLDDYVSLINDPRSHHPYNKLYTVEYLGNVVGGRPVRYLN 292 (438)
T ss_dssp HHHH---SSSEEEEEE-TTS-EEEEEEE-HHHHHHHCTTS-GGGEEEEE--T-TTS-TTCEEEETTTTSSTT-EEEEEEE
T ss_pred HHHcCCCChheeEEEeccccccccccccCchhHHHHHhCCCCcceEEEeeCCCccCccceeEEEccCCCEECCcceeEec
Confidence 0000 0 0000 01111 11333
Q ss_pred cCch--HHHHHHHHHhcCCeEEEEEcccccccCCCeeecCCCC---------------------CcCCeEEEEEEecccC
Q 017548 259 ISSD--EDQMAANLVKHGPLAVGINAVWMQTYIGGVSCPYICG---------------------KYLDHGVLIVGYGSSG 315 (369)
Q Consensus 259 ~~~~--~~~ik~~l~~~gPV~v~~~~~~f~~y~~Gi~~~~~~~---------------------~~~~Hav~iVGyg~~~ 315 (369)
++.+ .+.+..+|..+-||..+-++..+...+.||.+...-+ +..+|||+|||.+.+.
T Consensus 293 vpid~lk~~~i~~Lk~G~~VwfgcDV~k~~~~k~Gi~D~~~~d~~~~fg~~~~~~K~~Rl~~~eS~~tHAM~itGv~~D~ 372 (438)
T PF03051_consen 293 VPIDELKDAAIKSLKAGYPVWFGCDVGKFFDRKNGIMDTDLYDYDSLFGVDFNMSKAERLDYGESTMTHAMVITGVDLDE 372 (438)
T ss_dssp --HHHHHHHHHHHHHTT--EEEEEETTTTEETTTTEE-TTSB-HHHHHT--S-S-HHHHHHTTSS--EEEEEEEEEEE-T
T ss_pred cCHHHHHHHHHHHHHcCCcEEEeccCCccccccchhhccchhhhhhhhccccccCHHHHHHhCCCCCceeEEEEEEEecc
Confidence 3332 2445666766779999999987557788987543211 1258999999999752
Q ss_pred CcCCcCCCC-CEEEEEcCCCCCCCCCcEEEEEeC
Q 017548 316 FAPIRFKEK-PYWIIKNSWGENWGENGYYKICMG 348 (369)
Q Consensus 316 ~~~~~~~~~-~ywivkNSWG~~WG~~Gy~~i~~~ 348 (369)
+|+ .+|+|+||||++.|.+|||.|+..
T Consensus 373 ------~g~p~~wkVeNSWG~~~g~kGy~~msd~ 400 (438)
T PF03051_consen 373 ------DGKPVRWKVENSWGTDNGDKGYFYMSDD 400 (438)
T ss_dssp ------TSSEEEEEEE-SBTTTSTBTTEEEEEHH
T ss_pred ------CCCeeEEEEEcCCCCCCCCCcEEEECHH
Confidence 566 499999999999999999999863
No 20
>PF08246 Inhibitor_I29: Cathepsin propeptide inhibitor domain (I29); InterPro: IPR013201 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This entry represents a peptidase inhibitor domain, which belongs to MEROPS peptidase inhibitor family I29. The domain is also found at the N terminus of a variety of peptidase precursors that belong to MEROPS peptidase subfamily C1A; these include cathepsin L, papain, and procaricain (P10056 from SWISSPROT) []. It forms an alpha-helical domain that runs through the substrate-binding site, preventing access. Removal of this region by proteolytic cleavage results in activation of the enzyme. This domain is also found, in one or more copies, in a variety of cysteine peptidase inhibitors such as salarin [].; PDB: 3QT4_A 3QJ3_A 2C0Y_A 2L95_A 1CJL_A 1CS8_A 7PCK_A 1BY8_A 1PCI_A 2O6X_A ....
Probab=99.62 E-value=1.1e-15 Score=107.62 Aligned_cols=57 Identities=44% Similarity=0.736 Sum_probs=50.7
Q ss_pred HHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhc-CCCCCeeeeeccCCCCChHHH
Q 017548 53 FSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQ-LLDPTAVHGVTKFSDLTPSEF 109 (369)
Q Consensus 53 f~~f~~~~~k~Y~~~~e~~~R~~iF~~N~~~I~~~N-~~~~s~~~giN~FaDlt~~Ef 109 (369)
|+.|+++|+|+|.+.+|+.+|+.+|++|++.|.+|| ..+.+|++|+|+|+|||++||
T Consensus 1 F~~~~~~~~k~Y~~~~e~~~R~~~F~~N~~~I~~~N~~~~~~~~~~~N~fsD~t~eEf 58 (58)
T PF08246_consen 1 FEQFKKKYGKSYKSAEEEARRFAIFKENLRRIEEHNANGNNTYKLGLNQFSDMTPEEF 58 (58)
T ss_dssp HHHHHHHCT---SSHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEE-SSTTTTSSHHHH
T ss_pred CHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEeCccccCcChhhC
Confidence 899999999999999999999999999999999999 667899999999999999997
No 21
>smart00848 Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29). This domain is found at the N-terminus of some C1 peptidases such as Cathepsin L where it acts as a propeptide. There are also a number of proteins that are composed solely of multiple copies of this domain such as the peptidase inhibitor salarin. This family is classified as I29 by MEROPS. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a s
Probab=99.43 E-value=1.8e-13 Score=96.02 Aligned_cols=56 Identities=34% Similarity=0.605 Sum_probs=52.2
Q ss_pred HHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhcCCC-CCeeeeeccCCCCChHH
Q 017548 53 FSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLD-PTAVHGVTKFSDLTPSE 108 (369)
Q Consensus 53 f~~f~~~~~k~Y~~~~e~~~R~~iF~~N~~~I~~~N~~~-~s~~~giN~FaDlt~~E 108 (369)
|+.|+++|+|.|.+.+|..+|+.+|.+|++.|..||..+ .+|++|+|+|+|||++|
T Consensus 1 f~~~~~~~~k~y~~~~e~~~r~~~f~~n~~~i~~~N~~~~~~~~~~~N~fsDlt~eE 57 (57)
T smart00848 1 FEQWKKKYGKSYSSEEEELRRFEIFKENLKFIEEHNKKNDHSYTLGLNQFADLTNEE 57 (57)
T ss_pred ChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEecCcccccCCCCC
Confidence 688999999999999999999999999999999999764 68999999999999876
No 22
>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]
Probab=99.15 E-value=3.3e-10 Score=103.48 Aligned_cols=81 Identities=17% Similarity=0.371 Sum_probs=57.6
Q ss_pred chHHHHHHHHH----hcCCeEEEEEcccccccCCCeeecCCCC---------------------CcCCeEEEEEEecccC
Q 017548 261 SDEDQMAANLV----KHGPLAVGINAVWMQTYIGGVSCPYICG---------------------KYLDHGVLIVGYGSSG 315 (369)
Q Consensus 261 ~~~~~ik~~l~----~~gPV~v~~~~~~f~~y~~Gi~~~~~~~---------------------~~~~Hav~iVGyg~~~ 315 (369)
.+.+.+|++.+ .+-||-+|-++..+..-+.||......+ +...|||+|.|.+.+.
T Consensus 295 v~me~lkkl~~~q~qagetVwFG~dvgq~s~rk~Gimdtd~~~~~s~~g~~~~q~KA~RldY~eSLmTHAMvlTGvd~d~ 374 (444)
T COG3579 295 VDMERLKKLAIKQMQAGETVWFGCDVGQLSDRKTGIMDTDIYDYESSLGINLTQDKAGRLDYGESLMTHAMVLTGVDLDE 374 (444)
T ss_pred CcHHHHHHHHHHHHhcCCcEEeecCchhhcccccceeeehhccchhhhCCCcccchhhccccchHHHHHHHHhhcccccc
Confidence 34555555433 3459999998877767777875322110 1157999999999763
Q ss_pred CcCCcCCCC-CEEEEEcCCCCCCCCCcEEEEEe
Q 017548 316 FAPIRFKEK-PYWIIKNSWGENWGENGYYKICM 347 (369)
Q Consensus 316 ~~~~~~~~~-~ywivkNSWG~~WG~~Gy~~i~~ 347 (369)
+|. --|.|.||||.+=|.+|||-++-
T Consensus 375 ------~g~p~rwkVENSWG~d~G~~GyfvaSd 401 (444)
T COG3579 375 ------TGNPLRWKVENSWGKDVGKKGYFVASD 401 (444)
T ss_pred ------CCCceeeEeecccccccCCCceEeehH
Confidence 443 38999999999999999998873
No 23
>KOG4128 consensus Bleomycin hydrolases and aminopeptidases of cysteine protease family [Amino acid transport and metabolism]
Probab=98.02 E-value=4.6e-06 Score=76.56 Aligned_cols=84 Identities=23% Similarity=0.271 Sum_probs=55.8
Q ss_pred CcccCCCCCccHHHHHhhhHHHHHHhhhcC-CccccChhHhhh----------------cCCCCCCCCC-----CCCCCC
Q 017548 150 TGVKDQGACGSCWSFSATGALEGAHFLSTG-ELVSLSEQQLVD----------------CDHECDPEES-----GSCDSG 207 (369)
Q Consensus 150 ~pV~dQg~cgsCwAfa~~~~le~~~~~~~~-~~~~lS~q~l~d----------------c~~~~~~~~~-----~~~~~g 207 (369)
+||.||.+.|-||.|+.+..+.--+..+-+ ..+.||..+|+. -...+.+... -..+..
T Consensus 63 ~pvtnqkssGrcWift~ln~lrl~~~~kLnl~eFElSqayLFFwdKlErcnyFL~~vvd~a~r~ep~DgRlvq~Ll~nP~ 142 (457)
T KOG4128|consen 63 QPVTNQKSSGRCWIFTGLNLLRLEMDRKLNLPEFELSQAYLFFWDKLERCNYFLWTVVDLAMRCEPLDGRLVQNLLKNPV 142 (457)
T ss_pred cccccCcCCCceEEEechhHHHHHHHhcCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHhCCC
Confidence 699999999999999999887644443322 357788887652 1111111100 001334
Q ss_pred CCCCChHHHHHHHHHcCCcCCCCCccc
Q 017548 208 CNGGLMNSAFEYILKAGGVEREKDYPY 234 (369)
Q Consensus 208 C~GG~~~~a~~~~~~~~Gi~~e~~yPy 234 (369)
-+||.....++.++++ |+.+.++||-
T Consensus 143 ~DGGqw~MfvNlVkKY-GviPKkcy~~ 168 (457)
T KOG4128|consen 143 PDGGQWQMFVNLVKKY-GVIPKKCYLH 168 (457)
T ss_pred CCCchHHHHHHHHHHh-CCCcHHhccc
Confidence 4789988888888776 9999999974
No 24
>PF05543 Peptidase_C47: Staphopain peptidase C47; InterPro: IPR008750 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the peptidase family C47 (staphopain family, clan CA). The type example are the staphopains, which are one of four major families of proteinases secreted by the Gram-positive Staphylococcus aureus. These staphylococcal cysteine proteases are secreted as preproenzymes that are proteolytically cleaved to generate the mature enzyme [, , ].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1X9Y_D 1Y4H_B 1PXV_B 1CV8_A.
Probab=96.75 E-value=0.016 Score=49.15 Aligned_cols=121 Identities=17% Similarity=0.211 Sum_probs=68.7
Q ss_pred CCCCCccHHHHHhhhHHHHHHhhh--------cCCccccChhHhhhcCCCCCCCCCCCCCCCCCCCChHHHHHHHHHcCC
Q 017548 154 DQGACGSCWSFSATGALEGAHFLS--------TGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGG 225 (369)
Q Consensus 154 dQg~cgsCwAfa~~~~le~~~~~~--------~~~~~~lS~q~l~dc~~~~~~~~~~~~~~gC~GG~~~~a~~~~~~~~G 225 (369)
.||.-+-|-+|+.+++|-...-.. ..-...+|+++|.+++. .+...++|.+.. |
T Consensus 18 tQg~~pWCa~Ya~aailN~~~~~~~~~A~~iMr~~yPn~s~~~l~~~~~-----------------~~~~~i~y~ks~-g 79 (175)
T PF05543_consen 18 TQGYNPWCAGYAMAAILNATTNTKIYNAKDIMRYLYPNVSEEQLKFTSL-----------------TPNQMIKYAKSQ-G 79 (175)
T ss_dssp --SSSS-HHHHHHHHHHHHHCT-S---HHHHHHHHSTTS-CCCHHH--B------------------HHHHHHHHHHT-T
T ss_pred ccCcCcHHHHHHHHHHHHhhhCcCcCCHHHHHHHHCCCCCHHHHhhcCC-----------------CHHHHHHHHHHc-C
Confidence 489999999999999887642111 11124577777766643 255677776554 4
Q ss_pred cCCCCCcccCCCCCCCccCCCCCceEEeeeeEecCchHHHHHHHHHhcCCeEEEEEcccccccCCCeeecCCCCCcCCeE
Q 017548 226 VEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVWMQTYIGGVSCPYICGKYLDHG 305 (369)
Q Consensus 226 i~~e~~yPy~~~~~~~c~~~~~~~~~~i~~~~~~~~~~~~ik~~l~~~gPV~v~~~~~~f~~y~~Gi~~~~~~~~~~~Ha 305 (369)
... .+..-..+.+++++.+.++-|+.+..+...- ..+...+||
T Consensus 80 ~~~--------------------------~~~n~~~s~~eV~~~~~~nk~i~i~~~~v~~-----------~~~~~~gHA 122 (175)
T PF05543_consen 80 RNP--------------------------QYNNRMPSFDEVKKLIDNNKGIAILADRVEQ-----------TNGPHAGHA 122 (175)
T ss_dssp EEE--------------------------EEECS---HHHHHHHHHTT-EEEEEEEETTS-----------CTTB--EEE
T ss_pred cch--------------------------hHhcCCCCHHHHHHHHHcCCCeEEEeccccc-----------CCCCcccee
Confidence 321 1111112578889999888888876653211 122337899
Q ss_pred EEEEEecccCCcCCcCCCCCEEEEEcCCCC
Q 017548 306 VLIVGYGSSGFAPIRFKEKPYWIIKNSWGE 335 (369)
Q Consensus 306 v~iVGyg~~~~~~~~~~~~~ywivkNSWG~ 335 (369)
|+||||-.-. +|.++.++=|-|-.
T Consensus 123 lavvGya~~~------~g~~~y~~WNPW~~ 146 (175)
T PF05543_consen 123 LAVVGYAKPN------NGQKTYYFWNPWWN 146 (175)
T ss_dssp EEEEEEEEET------TSEEEEEEE-TT-S
T ss_pred EEEEeeeecC------CCCeEEEEeCCccC
Confidence 9999997642 56889999888843
No 25
>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A.
Probab=96.67 E-value=0.02 Score=46.88 Aligned_cols=57 Identities=26% Similarity=0.517 Sum_probs=33.4
Q ss_pred hHHHHHHHHHhcCCeEEEEEcccccccCCCeeecCCCCCcCCeEEEEEEecccCCcCCcCCCCCEEEEEcCC
Q 017548 262 DEDQMAANLVKHGPLAVGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSW 333 (369)
Q Consensus 262 ~~~~ik~~l~~~gPV~v~~~~~~f~~y~~Gi~~~~~~~~~~~Hav~iVGyg~~~~~~~~~~~~~ywivkNSW 333 (369)
+.+.|+++|.++.||.+.+....- ...++.+. ....+|.|+|+||+.+ + +++|..+|
T Consensus 88 ~~~~i~~~i~~G~Pvi~~~~~~~~-~~~~~~~~----~~~~~H~vvi~Gy~~~--------~--~~~v~DP~ 144 (144)
T PF13529_consen 88 SFDDIKQEIDAGRPVIVSVNSGWR-PPNGDGYD----GTYGGHYVVIIGYDED--------G--YVYVNDPW 144 (144)
T ss_dssp -HHHHHHHHHTT--EEEEEETTSS---TTEEEE----E-TTEEEEEEEEE-SS--------E---EEEE-TT
T ss_pred cHHHHHHHHHCCCcEEEEEEcccc-cCCCCCcC----CCcCCEEEEEEEEeCC--------C--EEEEeCCC
Confidence 578899999888899999874210 00111111 1237899999999875 2 78888877
No 26
>PF08127 Propeptide_C1: Peptidase family C1 propeptide; InterPro: IPR012599 This domain is found at the N-terminal of cathepsin B and cathepsin B-like peptidases that belong to MEROPS peptidase subfamily C1A. Cathepsin B are lysosomal cysteine proteinases belonging to the papain superfamily and are unique in their ability to act as both an endo- and an exopeptidases. They are synthesized as inactive zymogens. Activation of the peptidases occurs with the removal of the propeptide [, ]. ; GO: 0004197 cysteine-type endopeptidase activity, 0050790 regulation of catalytic activity; PDB: 1MIR_A 1PBH_A 2PBH_A 3PBH_A.
Probab=89.65 E-value=0.23 Score=31.82 Aligned_cols=35 Identities=17% Similarity=0.158 Sum_probs=20.3
Q ss_pred HHHHHhcCCCCCeeeeeccCCCCChHHHHhhhcCCcc
Q 017548 82 RRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNR 118 (369)
Q Consensus 82 ~~I~~~N~~~~s~~~giN~FaDlt~~Ef~~~~~~~~~ 118 (369)
++|+..|+.+.+|+.|.| |.+.+.+.+++ ++|..+
T Consensus 4 e~I~~IN~~~~tWkAG~N-F~~~~~~~ik~-LlGv~~ 38 (41)
T PF08127_consen 4 EFIDYINSKNTTWKAGRN-FENTSIEYIKR-LLGVLP 38 (41)
T ss_dssp HHHHHHHHCT-SEEE-----SSB-HHHHHH-CS-B-T
T ss_pred HHHHHHHcCCCcccCCCC-CCCCCHHHHHH-HcCCCC
Confidence 567777877889999999 88888777765 456543
No 27
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase
Probab=89.62 E-value=0.93 Score=42.76 Aligned_cols=47 Identities=17% Similarity=0.299 Sum_probs=32.6
Q ss_pred HHHHHHHHHhcCCeEEEEEcccccccCCCeeecCCCCCcCCeEEEEEEeccc
Q 017548 263 EDQMAANLVKHGPLAVGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSS 314 (369)
Q Consensus 263 ~~~ik~~l~~~gPV~v~~~~~~f~~y~~Gi~~~~~~~~~~~Hav~iVGyg~~ 314 (369)
.+.|++.|.++.||.+.++..++ .|...-| .....+|.|+|+||+++
T Consensus 78 ~~~l~~~l~~g~pv~~~~D~~~l-py~~~~~----~~~~~~H~i~v~G~d~~ 124 (317)
T PF14399_consen 78 WEELKEALDAGRPVIVWVDMYYL-PYRPNYY----KKHHADHYIVVYGYDEE 124 (317)
T ss_pred HHHHHHHHhCCCceEEEeccccC-CCCcccc----ccccCCcEEEEEEEeCC
Confidence 56788888777799999887543 3332211 11226899999999965
No 28
>PF09778 Guanylate_cyc_2: Guanylylate cyclase; InterPro: IPR018616 Members of this family of proteins catalyse the conversion of guanosine triphosphate (GTP) to 3',5'-cyclic guanosine monophosphate (cGMP) and pyrophosphate.
Probab=87.39 E-value=2.3 Score=37.75 Aligned_cols=53 Identities=21% Similarity=0.347 Sum_probs=34.1
Q ss_pred hHHHHHHHHHhcCCeEEEEEccccc--ccCCCeee--cCCC----CCcCCeEEEEEEeccc
Q 017548 262 DEDQMAANLVKHGPLAVGINAVWMQ--TYIGGVSC--PYIC----GKYLDHGVLIVGYGSS 314 (369)
Q Consensus 262 ~~~~ik~~l~~~gPV~v~~~~~~f~--~y~~Gi~~--~~~~----~~~~~Hav~iVGyg~~ 314 (369)
+.++|...|..+||+.+-++..... .-+.-... ...| ....+|-|+|+||+..
T Consensus 112 s~~ei~~hl~~g~~aIvLVd~~~L~C~~Ck~~~~~~~~~~~~~~~~~Y~GHYVVlcGyd~~ 172 (212)
T PF09778_consen 112 SIQEIIEHLSSGGPAIVLVDASLLHCDLCKSNCFDPIGSKCFGRSPDYQGHYVVLCGYDAA 172 (212)
T ss_pred cHHHHHHHHhCCCcEEEEEccccccChhhcccccccccccccCCCCCccEEEEEEEeecCC
Confidence 6789999999999888888765321 00222111 1111 2347999999999865
No 29
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=84.07 E-value=0.92 Score=34.91 Aligned_cols=11 Identities=27% Similarity=0.081 Sum_probs=6.2
Q ss_pred ChhhHHHHHHH
Q 017548 1 MERLILSSLLL 11 (369)
Q Consensus 1 m~~~~~~~~~~ 11 (369)
|+++.+|||.|
T Consensus 1 MaSK~~llL~l 11 (95)
T PF07172_consen 1 MASKAFLLLGL 11 (95)
T ss_pred CchhHHHHHHH
Confidence 88665444433
No 30
>COG4990 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.71 E-value=2.5 Score=36.23 Aligned_cols=47 Identities=23% Similarity=0.477 Sum_probs=35.4
Q ss_pred hHHHHHHHHHhcCCeEEEEEcccccccCCCeeecCCCCCcCCeEEEEEEecccCCcCCcCCCCCEEEEEcCCC
Q 017548 262 DEDQMAANLVKHGPLAVGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWG 334 (369)
Q Consensus 262 ~~~~ik~~l~~~gPV~v~~~~~~f~~y~~Gi~~~~~~~~~~~Hav~iVGyg~~~~~~~~~~~~~ywivkNSWG 334 (369)
+..+|+..|.+..||.+-... |.. ..-|+|+|+||++. ++..-++||
T Consensus 122 sl~~ik~ql~kg~PV~iw~T~--~~~-------------~s~H~v~itgyDk~-----------n~yynDpyG 168 (195)
T COG4990 122 SLSDIKGQLLKGRPVVIWVTN--FHS-------------YSIHSVLITGYDKY-----------NIYYNDPYG 168 (195)
T ss_pred cHHHHHHHHhcCCcEEEEEec--ccc-------------cceeeeEeeccccc-----------ceEeccccc
Confidence 689999999999999887654 322 23599999999976 455566665
No 31
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=79.06 E-value=26 Score=29.50 Aligned_cols=39 Identities=26% Similarity=0.384 Sum_probs=29.4
Q ss_pred hHHHHHHHHHhcCCeEEEEEcccccccCCCeeecCCCCCcCCeEEEEEEeccc
Q 017548 262 DEDQMAANLVKHGPLAVGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSS 314 (369)
Q Consensus 262 ~~~~ik~~l~~~gPV~v~~~~~~f~~y~~Gi~~~~~~~~~~~Hav~iVGyg~~ 314 (369)
..+.+...|.++||+-++.... .+.-..|+++|.|-+.+
T Consensus 97 t~e~~~~LL~~yGPLwv~~~~P--------------~~~~~~H~~ViTGI~~d 135 (166)
T PF12385_consen 97 TAEGLANLLREYGPLWVAWEAP--------------GDSWVAHASVITGIDGD 135 (166)
T ss_pred CHHHHHHHHHHcCCeEEEecCC--------------CCcceeeEEEEEeecCC
Confidence 4688999999999999986542 11124699999998765
No 32
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=73.71 E-value=3.8 Score=27.04 Aligned_cols=19 Identities=32% Similarity=0.518 Sum_probs=9.9
Q ss_pred ChhhHHHHHHHHHHHHHhh
Q 017548 1 MERLILSSLLLLLLSSVLA 19 (369)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~ 19 (369)
|+|+|.++++++++++.++
T Consensus 2 mKk~i~~i~~~l~~~~~l~ 20 (48)
T PRK10081 2 VKKTIAAIFSVLVLSTVLT 20 (48)
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 6666665554444444333
No 33
>cd02549 Peptidase_C39A A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are
Probab=70.47 E-value=14 Score=29.79 Aligned_cols=34 Identities=24% Similarity=0.413 Sum_probs=24.6
Q ss_pred HHHHHHhcCCeEEEEEcccccccCCCeeecCCCCCcCCeEEEEEEec
Q 017548 266 MAANLVKHGPLAVGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYG 312 (369)
Q Consensus 266 ik~~l~~~gPV~v~~~~~~f~~y~~Gi~~~~~~~~~~~Hav~iVGyg 312 (369)
+++.+....||.+.++.. . -....+|.|+|+||+
T Consensus 70 ~~~~l~~~~Pvi~~~~~~--------~-----~~~~~gH~vVv~g~~ 103 (141)
T cd02549 70 LLRQLAAGHPVIVSVNLG--------V-----SITPSGHAMVVIGYD 103 (141)
T ss_pred HHHHHHCCCeEEEEEecC--------c-----ccCCCCeEEEEEEEc
Confidence 777887888999877641 0 011268999999998
No 34
>PF15284 PAGK: Phage-encoded virulence factor
Probab=70.25 E-value=3.6 Score=28.51 Aligned_cols=23 Identities=17% Similarity=0.395 Sum_probs=13.1
Q ss_pred Chh--hHHHHHHHHHHHHHhhhccc
Q 017548 1 MER--LILSSLLLLLLSSVLASAVA 23 (369)
Q Consensus 1 m~~--~~~~~~~~~~~~~~~~~~~~ 23 (369)
|++ .|+|.++++|.++.+++++.
T Consensus 1 Mkk~ksifL~l~~~LsA~~FSasam 25 (61)
T PF15284_consen 1 MKKFKSIFLALVFILSAAGFSASAM 25 (61)
T ss_pred ChHHHHHHHHHHHHHHHhhhhHHHH
Confidence 774 35555555566666665543
No 35
>COG5510 Predicted small secreted protein [Function unknown]
Probab=69.15 E-value=6 Score=25.44 Aligned_cols=19 Identities=47% Similarity=0.602 Sum_probs=9.3
Q ss_pred ChhhHHHHHHHHHHHHHhh
Q 017548 1 MERLILSSLLLLLLSSVLA 19 (369)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~ 19 (369)
|+|.+++++++++.+..++
T Consensus 2 mk~t~l~i~~vll~s~lla 20 (44)
T COG5510 2 MKKTILLIALVLLASTLLA 20 (44)
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 6665555544444433333
No 36
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=68.84 E-value=3.4 Score=23.36 Aligned_cols=14 Identities=21% Similarity=0.631 Sum_probs=7.1
Q ss_pred hhhHHHHHHHHHHH
Q 017548 2 ERLILSSLLLLLLS 15 (369)
Q Consensus 2 ~~~~~~~~~~~~~~ 15 (369)
+|++++++.++.|+
T Consensus 8 Kkil~~l~a~~~La 21 (25)
T PF08139_consen 8 KKILFPLLALFMLA 21 (25)
T ss_pred HHHHHHHHHHHHHh
Confidence 66555554444443
No 37
>cd00044 CysPc Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
Probab=67.16 E-value=14 Score=34.88 Aligned_cols=42 Identities=14% Similarity=0.356 Sum_probs=32.2
Q ss_pred CCeEEEEEEecccCCcCCcCCCCCEEEEEcCCCC--CC------------------------CCCcEEEEEeC
Q 017548 302 LDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGE--NW------------------------GENGYYKICMG 348 (369)
Q Consensus 302 ~~Hav~iVGyg~~~~~~~~~~~~~ywivkNSWG~--~W------------------------G~~Gy~~i~~~ 348 (369)
.+||-.|++.-.-. ..+.....+||.||. .| .++|.|||+..
T Consensus 235 ~~HaY~Vl~~~~~~-----~~~~~lv~lrNPWg~~~w~G~ws~~~~~w~~~~~~~~~~~~~~~~dG~Fwm~~~ 302 (315)
T cd00044 235 KGHAYSVLDVREVQ-----EEGLRLLRLRNPWGVGEWWGGWSDDSSEWWVIDAERKKLLLSGKDDGEFWMSFE 302 (315)
T ss_pred cCcceEEeEEEEEc-----cCceEEEEecCCccCCCccCCCCCCCchhccChHHHHHhcCCCCCCCEEEEEhH
Confidence 58999999997641 026789999999994 22 36899999875
No 38
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=59.36 E-value=9 Score=28.31 Aligned_cols=21 Identities=38% Similarity=0.439 Sum_probs=13.0
Q ss_pred Chhh-HHHHHHHHHHHHHhhhc
Q 017548 1 MERL-ILSSLLLLLLSSVLASA 21 (369)
Q Consensus 1 m~~~-~~~~~~~~~~~~~~~~~ 21 (369)
|+|. .||.+|.+.|+.++||.
T Consensus 1 MaRRlwiLslLAVtLtVALAAP 22 (100)
T PF05984_consen 1 MARRLWILSLLAVTLTVALAAP 22 (100)
T ss_pred CchhhHHHHHHHHHHHHHhhcc
Confidence 8865 44446666677666643
No 39
>PRK10053 hypothetical protein; Provisional
Probab=51.80 E-value=14 Score=30.24 Aligned_cols=20 Identities=20% Similarity=0.260 Sum_probs=12.9
Q ss_pred ChhhHHHHHHHHHHHHHhhh
Q 017548 1 MERLILSSLLLLLLSSVLAS 20 (369)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~ 20 (369)
|++++++++++++.++++|+
T Consensus 1 MKK~~~~~~~~~~s~~~~A~ 20 (130)
T PRK10053 1 MKLQAIALASFLVMPYALAD 20 (130)
T ss_pred CcHHHHHHHHHHHHHHHHHH
Confidence 89887767666555555553
No 40
>PF11777 DUF3316: Protein of unknown function (DUF3316); InterPro: IPR016879 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=51.39 E-value=13 Score=29.45 Aligned_cols=19 Identities=53% Similarity=0.679 Sum_probs=12.0
Q ss_pred ChhhHHHHHHHHHHHHHhh
Q 017548 1 MERLILSSLLLLLLSSVLA 19 (369)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~ 19 (369)
||+++++++++|+-+.++|
T Consensus 1 MKk~~ll~~~ll~s~~a~A 19 (114)
T PF11777_consen 1 MKKIILLASLLLLSSSAFA 19 (114)
T ss_pred CchHHHHHHHHHHHHHHhh
Confidence 8888877755554444444
No 41
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=47.63 E-value=21 Score=24.71 Aligned_cols=6 Identities=17% Similarity=0.423 Sum_probs=3.5
Q ss_pred ChhhHH
Q 017548 1 MERLIL 6 (369)
Q Consensus 1 m~~~~~ 6 (369)
|+.+++
T Consensus 1 MA~Kl~ 6 (65)
T PF10731_consen 1 MASKLI 6 (65)
T ss_pred Ccchhh
Confidence 775543
No 42
>PF01640 Peptidase_C10: Peptidase C10 family classification.; InterPro: IPR000200 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C10 (streptopain family, clan CA). Streptopain is a cysteine protease found in Streptococcus pyogenes that shows some structural and functional similarity to papain (family C1) [, ]. The order of the catalytic cysteine/histidine dyad is the same and the surrounding sequences are similar. The two proteins also show similar specificities, both preferring a hydrophobic residue at the P2 site [, ]. Streptopain shows a high degree of sequence similarity to the S. pyogenes exotoxin B, and strong similarity to the prtT gene product of Porphyromonas gingivalis (Bacteroides gingivalis), both of which have been included in the family [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 4D8I_A 4D8E_A 4D8B_A 3BBA_B 3BB7_A 2JTC_A 1PVJ_A 1DKI_D 2UZJ_A.
Probab=44.89 E-value=1.1e+02 Score=26.56 Aligned_cols=51 Identities=35% Similarity=0.690 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcCCeEEEEEcccccccCCCeeecCCCCCcCCeEEEEEEecccCCcCCcCCCCCEEEEEcCCCCCCC--CC
Q 017548 263 EDQMAANLVKHGPLAVGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWG--EN 340 (369)
Q Consensus 263 ~~~ik~~l~~~gPV~v~~~~~~f~~y~~Gi~~~~~~~~~~~Hav~iVGyg~~~~~~~~~~~~~ywivkNSWG~~WG--~~ 340 (369)
.+.|+.+|.+..||.+.-... ..+||.+|=||..+ .|+-+= || || .+
T Consensus 140 ~~~i~~el~~~rPV~~~g~~~-----------------~~GHawViDGy~~~----------~~~H~N--wG--W~G~~n 188 (192)
T PF01640_consen 140 MDMIRNELDNGRPVLYSGNSK-----------------SGGHAWVIDGYDSD----------GYFHCN--WG--WGGSSN 188 (192)
T ss_dssp HHHHHHHHHTT--EEEEEEET-----------------TEEEEEEEEEEESS----------SEEEEE---S--STTTT-
T ss_pred HHHHHHHHHcCCCEEEEEecC-----------------CCCeEEEEcCccCC----------CeEEEe--eC--ccCCCC
Confidence 357888898888997643211 01899999999643 466544 65 55 46
Q ss_pred cEEE
Q 017548 341 GYYK 344 (369)
Q Consensus 341 Gy~~ 344 (369)
|||+
T Consensus 189 Gyy~ 192 (192)
T PF01640_consen 189 GYYR 192 (192)
T ss_dssp EEEE
T ss_pred CccC
Confidence 9985
No 43
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=39.87 E-value=12 Score=24.14 Aligned_cols=12 Identities=33% Similarity=0.789 Sum_probs=6.3
Q ss_pred ChhhHHHHHHHH
Q 017548 1 MERLILSSLLLL 12 (369)
Q Consensus 1 m~~~~~~~~~~~ 12 (369)
|+++++++++++
T Consensus 1 MkKi~~~~i~~~ 12 (46)
T PF02402_consen 1 MKKIIFIGIFLL 12 (46)
T ss_pred CcEEEEeHHHHH
Confidence 786644444333
No 44
>PRK09810 entericidin A; Provisional
Probab=39.87 E-value=30 Score=22.13 Aligned_cols=8 Identities=50% Similarity=0.704 Sum_probs=4.5
Q ss_pred ChhhHHHH
Q 017548 1 MERLILSS 8 (369)
Q Consensus 1 m~~~~~~~ 8 (369)
|+|+++++
T Consensus 2 Mkk~~~l~ 9 (41)
T PRK09810 2 MKRLIVLV 9 (41)
T ss_pred hHHHHHHH
Confidence 66655544
No 45
>PF15240 Pro-rich: Proline-rich
Probab=39.13 E-value=19 Score=30.96 Aligned_cols=8 Identities=25% Similarity=0.189 Sum_probs=3.4
Q ss_pred HHHHHHHh
Q 017548 11 LLLLSSVL 18 (369)
Q Consensus 11 ~~~~~~~~ 18 (369)
++||+|+.
T Consensus 8 vALLALSS 15 (179)
T PF15240_consen 8 VALLALSS 15 (179)
T ss_pred HHHHHhhh
Confidence 33444433
No 46
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=37.29 E-value=27 Score=25.90 Aligned_cols=18 Identities=28% Similarity=0.469 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHHHhhhc
Q 017548 4 LILSSLLLLLLSSVLASA 21 (369)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~ 21 (369)
++.|+|++|++.++.++|
T Consensus 31 LivLVIIiLlImlfqsSS 48 (85)
T PF10717_consen 31 LIVLVIIILLIMLFQSSS 48 (85)
T ss_pred HHHHHHHHHHHHHHhccC
Confidence 444445555555555544
No 47
>PRK10386 curli assembly protein CsgE; Provisional
Probab=36.79 E-value=46 Score=27.16 Aligned_cols=19 Identities=21% Similarity=0.072 Sum_probs=12.2
Q ss_pred ChhhHHHHHHHHHHHHHhh
Q 017548 1 MERLILSSLLLLLLSSVLA 19 (369)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~ 19 (369)
|+|++..++|+++|+++.+
T Consensus 1 ~~r~~~~~l~~~~l~~~~~ 19 (130)
T PRK10386 1 MKRYLRWIVAAELLFAAGN 19 (130)
T ss_pred ChhHHHHHHHHHHHHhCcc
Confidence 8998776666555555443
No 48
>PF12276 DUF3617: Protein of unknown function (DUF3617); InterPro: IPR022061 This family of proteins is found in bacteria. Proteins in this family are typically between 155 and 179 amino acids in length. There is a single completely conserved residue C that may be functionally important.
Probab=33.24 E-value=32 Score=28.81 Aligned_cols=15 Identities=47% Similarity=0.634 Sum_probs=8.7
Q ss_pred ChhhHHHHHHHHHHH
Q 017548 1 MERLILSSLLLLLLS 15 (369)
Q Consensus 1 m~~~~~~~~~~~~~~ 15 (369)
|+|.+++++++++++
T Consensus 1 M~~~~~~~~~~~~~~ 15 (162)
T PF12276_consen 1 MKRRLLLALALALLA 15 (162)
T ss_pred CchHHHHHHHHHHHH
Confidence 787766555444443
No 49
>smart00230 CysPc Calpain-like thiol protease family. Calpain-like thiol protease family (peptidase family C2). Calcium activated neutral protease (large subunit).
Probab=33.04 E-value=69 Score=30.38 Aligned_cols=27 Identities=15% Similarity=0.411 Sum_probs=21.1
Q ss_pred CCeEEEEEEecccCCcCCcCCCCC--EEEEEcCCCC
Q 017548 302 LDHGVLIVGYGSSGFAPIRFKEKP--YWIIKNSWGE 335 (369)
Q Consensus 302 ~~Hav~iVGyg~~~~~~~~~~~~~--ywivkNSWG~ 335 (369)
.+||-.|++...- ++.+ -..+||-||.
T Consensus 227 ~~HaYsVl~v~~~-------~~~~~~Ll~lrNPWg~ 255 (318)
T smart00230 227 KGHAYSVTDVREV-------QGRRQELLRLRNPWGQ 255 (318)
T ss_pred cCccEEEEEEEEE-------ecCCeEEEEEECCCCC
Confidence 5899999998754 3334 8999999983
No 50
>PRK13697 cytochrome c6; Provisional
Probab=32.89 E-value=48 Score=25.71 Aligned_cols=15 Identities=40% Similarity=0.492 Sum_probs=8.5
Q ss_pred ChhhHHHHHHHHHHH
Q 017548 1 MERLILSSLLLLLLS 15 (369)
Q Consensus 1 m~~~~~~~~~~~~~~ 15 (369)
|+|++.+.++++.++
T Consensus 1 m~~~~~~~~~~~~~~ 15 (111)
T PRK13697 1 MKKILSLVLLGLLLL 15 (111)
T ss_pred ChhHHHHHHHHHHHH
Confidence 888765554444333
No 51
>TIGR00156 conserved hypothetical protein TIGR00156. As of the last revision, this family consists only of two proteins from Escherichia coli and one from the related species Haemophilus influenzae.
Probab=31.89 E-value=40 Score=27.34 Aligned_cols=12 Identities=17% Similarity=-0.022 Sum_probs=7.8
Q ss_pred ChhhHHHHHHHH
Q 017548 1 MERLILSSLLLL 12 (369)
Q Consensus 1 m~~~~~~~~~~~ 12 (369)
|++++++++++|
T Consensus 1 MKK~~~~~~~~l 12 (126)
T TIGR00156 1 MKFQAIVLASAL 12 (126)
T ss_pred CchHHHHHHHHH
Confidence 888766665543
No 52
>PF11912 DUF3430: Protein of unknown function (DUF3430); InterPro: IPR021837 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 209 to 265 amino acids in length.
Probab=31.66 E-value=36 Score=29.86 Aligned_cols=17 Identities=41% Similarity=0.512 Sum_probs=8.5
Q ss_pred ChhhHHHHHHHHHHHHH
Q 017548 1 MERLILSSLLLLLLSSV 17 (369)
Q Consensus 1 m~~~~~~~~~~~~~~~~ 17 (369)
||-+++|+||++++..+
T Consensus 1 MKll~~lilli~~~~~~ 17 (212)
T PF11912_consen 1 MKLLISLILLILLIINF 17 (212)
T ss_pred CcHHHHHHHHHHHHHhh
Confidence 77654544444444343
No 53
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=31.54 E-value=44 Score=25.66 Aligned_cols=6 Identities=50% Similarity=0.728 Sum_probs=2.4
Q ss_pred hHHHHH
Q 017548 4 LILSSL 9 (369)
Q Consensus 4 ~~~~~~ 9 (369)
+||.++
T Consensus 7 llL~l~ 12 (95)
T PF07172_consen 7 LLLGLL 12 (95)
T ss_pred HHHHHH
Confidence 334333
No 54
>PF02553 CbiN: Cobalt transport protein component CbiN; InterPro: IPR003705 The cobalt transport protein CbiN is part of the active cobalt transport system involved in uptake of cobalt in to the cell involved with cobalamin biosynthesis (vitamin B12). It has been suggested that CbiN may function as the periplasmic binding protein component of the active cobalt transport system [].; GO: 0015087 cobalt ion transmembrane transporter activity, 0006824 cobalt ion transport, 0009236 cobalamin biosynthetic process, 0016020 membrane
Probab=29.11 E-value=47 Score=24.24 Aligned_cols=13 Identities=38% Similarity=0.585 Sum_probs=7.2
Q ss_pred ChhhHHHHHHHHH
Q 017548 1 MERLILSSLLLLL 13 (369)
Q Consensus 1 m~~~~~~~~~~~~ 13 (369)
|++++++++++++
T Consensus 1 ~kn~~l~~~vv~l 13 (74)
T PF02553_consen 1 MKNLLLLLLVVAL 13 (74)
T ss_pred CceeHHHHHHHHH
Confidence 7776555554333
No 55
>PRK10449 heat-inducible protein; Provisional
Probab=28.94 E-value=43 Score=27.59 Aligned_cols=19 Identities=21% Similarity=0.434 Sum_probs=11.3
Q ss_pred ChhhHHHHHHHHHHHHHhh
Q 017548 1 MERLILSSLLLLLLSSVLA 19 (369)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~ 19 (369)
|||+++++++.++|+.+.+
T Consensus 1 mk~~~~~~~~~~~l~~C~~ 19 (140)
T PRK10449 1 MKKVVALVALSLLMAGCVS 19 (140)
T ss_pred ChhHHHHHHHHHHHHHhcC
Confidence 8888766555545544444
No 56
>PRK13883 conjugal transfer protein TrbH; Provisional
Probab=28.79 E-value=36 Score=28.56 Aligned_cols=19 Identities=32% Similarity=0.529 Sum_probs=13.2
Q ss_pred ChhhHHHHHHHHHHHHHhh
Q 017548 1 MERLILSSLLLLLLSSVLA 19 (369)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~ 19 (369)
|+|++++.+++|+|+-|++
T Consensus 1 Mrk~l~~~~l~l~LaGCAt 19 (151)
T PRK13883 1 MRKIVLLALLALALGGCAT 19 (151)
T ss_pred ChhHHHHHHHHHHHhcccC
Confidence 8888887776666655554
No 57
>PF11106 YjbE: Exopolysaccharide production protein YjbE
Probab=28.71 E-value=53 Score=23.99 Aligned_cols=11 Identities=18% Similarity=0.513 Sum_probs=6.8
Q ss_pred ChhhHHHHHHH
Q 017548 1 MERLILSSLLL 11 (369)
Q Consensus 1 m~~~~~~~~~~ 11 (369)
|||.+++++.+
T Consensus 1 MKK~~~~~~~i 11 (80)
T PF11106_consen 1 MKKIIYGLFAI 11 (80)
T ss_pred ChhHHHHHHHH
Confidence 88877644333
No 58
>COG3088 CcmH Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones]
Probab=28.28 E-value=1.5e+02 Score=24.82 Aligned_cols=19 Identities=53% Similarity=0.567 Sum_probs=9.1
Q ss_pred ChhhHHHHHHHHHHHHHhh
Q 017548 1 MERLILSSLLLLLLSSVLA 19 (369)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~ 19 (369)
|+..-.+++++|+++.+++
T Consensus 1 m~~~~~~ll~~l~~~~~~~ 19 (153)
T COG3088 1 MKKLRALLLLLLLLFSAFA 19 (153)
T ss_pred CchHHHHHHHHHHHHHHHH
Confidence 6655444444444444333
No 59
>PF08138 Sex_peptide: Sex peptide (SP) family; InterPro: IPR012608 This family consists of Sex Peptides (SP) that are found in Drosophila. On mating, Drosophila females decreases her remating rate and increases her egg-laying rate due, in part, to the transfer of SP from the male to the female. SP are found in seminal fluids transferred from the male to the female during mating. The male seminal fluid proteins are referred to as accessory gland proteins (Acps). The SP is one of the most interesting Acps and plays an important role in reproduction [].; GO: 0005179 hormone activity, 0046008 regulation of female receptivity, post-mating, 0005576 extracellular region; PDB: 2LAQ_A.
Probab=28.09 E-value=20 Score=24.17 Aligned_cols=17 Identities=41% Similarity=0.491 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHHHHH
Q 017548 1 MERLILSSLLLLLLSSV 17 (369)
Q Consensus 1 m~~~~~~~~~~~~~~~~ 17 (369)
|+..++|+++++++-++
T Consensus 1 Mk~p~~llllvlllGla 17 (56)
T PF08138_consen 1 MKTPIFLLLLVLLLGLA 17 (56)
T ss_dssp -----------------
T ss_pred CcchHHHHHHHHHHHHH
Confidence 66555544444333333
No 60
>PF11153 DUF2931: Protein of unknown function (DUF2931); InterPro: IPR021326 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently, there is no known function.
Probab=27.77 E-value=41 Score=29.88 Aligned_cols=18 Identities=39% Similarity=0.630 Sum_probs=10.4
Q ss_pred ChhhHHHHHHHHHHHHHhh
Q 017548 1 MERLILSSLLLLLLSSVLA 19 (369)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~ 19 (369)
|+++++|++ +|+|+++.+
T Consensus 1 mk~i~~l~l-~lll~~C~~ 18 (216)
T PF11153_consen 1 MKKILLLLL-LLLLTGCST 18 (216)
T ss_pred ChHHHHHHH-HHHHHhhcC
Confidence 887766653 445555544
No 61
>PRK10780 periplasmic chaperone; Provisional
Probab=27.15 E-value=94 Score=26.28 Aligned_cols=16 Identities=31% Similarity=0.441 Sum_probs=9.5
Q ss_pred ChhhHHHHHHHHHHHH
Q 017548 1 MERLILSSLLLLLLSS 16 (369)
Q Consensus 1 m~~~~~~~~~~~~~~~ 16 (369)
|++++++++++|++.+
T Consensus 1 Mkk~~~~~~l~l~~~~ 16 (165)
T PRK10780 1 MKKWLLAAGLGLALAT 16 (165)
T ss_pred ChHHHHHHHHHHHHHH
Confidence 8888776555444333
No 62
>PF15240 Pro-rich: Proline-rich
Probab=26.19 E-value=52 Score=28.33 Aligned_cols=14 Identities=43% Similarity=0.487 Sum_probs=6.3
Q ss_pred HHHHHHHHhhhccc
Q 017548 10 LLLLLSSVLASAVA 23 (369)
Q Consensus 10 ~~~~~~~~~~~~~~ 23 (369)
|+||-++.||.|.|
T Consensus 3 lVLLSvALLALSSA 16 (179)
T PF15240_consen 3 LVLLSVALLALSSA 16 (179)
T ss_pred hHHHHHHHHHhhhc
Confidence 33344444444544
No 63
>PF06291 Lambda_Bor: Bor protein; InterPro: IPR010438 This family consists of several Bacteriophage lambda Bor and Escherichia coli Iss proteins. Expression of bor significantly increases the survival of the E. coli host cell in animal serum. This property is a well known bacterial virulence determinant indeed, bor and its adjacent sequences are highly homologous to the iss serum resistance locus of the plasmid ColV2-K94, which confers virulence in animals. It has been suggested that lysogeny may generally have a role in bacterial survival in animal hosts, and perhaps in pathogenesis [].
Probab=26.14 E-value=37 Score=26.20 Aligned_cols=19 Identities=37% Similarity=0.634 Sum_probs=12.6
Q ss_pred ChhhHHHHHHHHHHHHHhh
Q 017548 1 MERLILSSLLLLLLSSVLA 19 (369)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~ 19 (369)
||++++...+.|+|+.+++
T Consensus 1 mKk~ll~~~lallLtgCat 19 (97)
T PF06291_consen 1 MKKLLLAAALALLLTGCAT 19 (97)
T ss_pred CcHHHHHHHHHHHHcccce
Confidence 8888776666655555554
No 64
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=26.05 E-value=1.3e+02 Score=28.47 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHhhhcc
Q 017548 5 ILSSLLLLLLSSVLASAV 22 (369)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~ 22 (369)
.++++++.+..|.+.|+.
T Consensus 9 ~l~Livct~tYLLvGAaV 26 (350)
T KOG4404|consen 9 TLLLIVCTFTYLLVGAAV 26 (350)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444455556666666554
No 65
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=24.95 E-value=55 Score=27.05 Aligned_cols=8 Identities=13% Similarity=0.318 Sum_probs=4.0
Q ss_pred ChhhHHHH
Q 017548 1 MERLILSS 8 (369)
Q Consensus 1 m~~~~~~~ 8 (369)
|+++++++
T Consensus 1 ~kkkl~~i 8 (142)
T PRK07718 1 MKNKLIKI 8 (142)
T ss_pred CcchHHHH
Confidence 66544433
No 66
>PF10880 DUF2673: Protein of unknown function (DUF2673); InterPro: IPR024247 This family of proteins with unknown function appears to be restricted to Rickettsiae spp.
Probab=24.56 E-value=77 Score=21.57 Aligned_cols=21 Identities=38% Similarity=0.488 Sum_probs=10.6
Q ss_pred ChhhHHHHHHHHHHHHHhhhc
Q 017548 1 MERLILSSLLLLLLSSVLASA 21 (369)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~ 21 (369)
|+.++-++|+|.|-+..++++
T Consensus 1 mknllkillilafa~pvfass 21 (65)
T PF10880_consen 1 MKNLLKILLILAFASPVFASS 21 (65)
T ss_pred ChhHHHHHHHHHHhhhHhhhc
Confidence 776654444444444444443
No 67
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=24.32 E-value=49 Score=23.68 Aligned_cols=15 Identities=33% Similarity=0.388 Sum_probs=8.5
Q ss_pred ChhhHHHHHHHHHHH
Q 017548 1 MERLILSSLLLLLLS 15 (369)
Q Consensus 1 m~~~~~~~~~~~~~~ 15 (369)
|++++.||+++++++
T Consensus 1 ~~~~~~~~~~~~~~~ 15 (92)
T TIGR02052 1 MKKLATLLALFVLTS 15 (92)
T ss_pred ChhHHHHHHHHHHhc
Confidence 787766555444333
No 68
>PF05887 Trypan_PARP: Procyclic acidic repetitive protein (PARP); InterPro: IPR008882 This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of T. brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated [].; GO: 0016020 membrane; PDB: 2X34_B 2X32_B.
Probab=23.74 E-value=26 Score=28.50 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=0.0
Q ss_pred Ch-hhHHHHHHHHHHHHHh
Q 017548 1 ME-RLILSSLLLLLLSSVL 18 (369)
Q Consensus 1 m~-~~~~~~~~~~~~~~~~ 18 (369)
|. |.+.||.+||++++.+
T Consensus 1 m~pr~l~~LavLL~~A~Lf 19 (143)
T PF05887_consen 1 MTPRHLCLLAVLLFGAALF 19 (143)
T ss_dssp -------------------
T ss_pred Ccccccccccccccccccc
Confidence 55 4444443444443333
No 69
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=23.60 E-value=3.2e+02 Score=25.45 Aligned_cols=22 Identities=14% Similarity=0.077 Sum_probs=10.1
Q ss_pred HHHHHHHhCCccCCHHHHHHHH
Q 017548 53 FSLFKSKFSKTYATQEEHDYRF 74 (369)
Q Consensus 53 f~~f~~~~~k~Y~~~~e~~~R~ 74 (369)
+.++.+.|.+.|...++...+.
T Consensus 61 ~~~~~~~~~~~~~en~~Lk~~l 82 (284)
T COG1792 61 VLEFLKSLKDLALENEELKKEL 82 (284)
T ss_pred HHHHHHHhHHHHHHhHHHHHHH
Confidence 4455555555554333333333
No 70
>PRK10144 formate-dependent nitrite reductase complex subunit NrfF; Provisional
Probab=23.01 E-value=92 Score=25.29 Aligned_cols=9 Identities=22% Similarity=0.124 Sum_probs=5.4
Q ss_pred ChhhHHHHH
Q 017548 1 MERLILSSL 9 (369)
Q Consensus 1 m~~~~~~~~ 9 (369)
|+|++++++
T Consensus 1 ~~~l~~~l~ 9 (126)
T PRK10144 1 NKGLLTLLL 9 (126)
T ss_pred CchHHHHHH
Confidence 788655443
No 71
>PF12071 DUF3551: Protein of unknown function (DUF3551); InterPro: IPR021937 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 79 to 104 amino acids in length. This protein has a single completely conserved residue C that may be functionally important.
Probab=22.56 E-value=94 Score=23.16 Aligned_cols=11 Identities=55% Similarity=0.884 Sum_probs=6.7
Q ss_pred ChhhHHHHHHH
Q 017548 1 MERLILSSLLL 11 (369)
Q Consensus 1 m~~~~~~~~~~ 11 (369)
|+++++..+.+
T Consensus 1 MR~~~~aa~a~ 11 (82)
T PF12071_consen 1 MRRLLLAALAL 11 (82)
T ss_pred ChhHHHHHHHH
Confidence 88776655443
No 72
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=22.38 E-value=81 Score=19.55 Aligned_cols=9 Identities=33% Similarity=0.246 Sum_probs=4.7
Q ss_pred ChhhHHHHH
Q 017548 1 MERLILSSL 9 (369)
Q Consensus 1 m~~~~~~~~ 9 (369)
||-+.+.++
T Consensus 1 Mk~l~~a~~ 9 (36)
T PF08194_consen 1 MKCLSLAFA 9 (36)
T ss_pred CceeHHHHH
Confidence 776544333
No 73
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=22.12 E-value=77 Score=22.42 Aligned_cols=11 Identities=36% Similarity=0.528 Sum_probs=5.7
Q ss_pred ChhhHHHHHHH
Q 017548 1 MERLILSSLLL 11 (369)
Q Consensus 1 m~~~~~~~~~~ 11 (369)
|+.+.+.+|+.
T Consensus 1 mnn~Si~VLla 11 (71)
T PF04202_consen 1 MNNLSIAVLLA 11 (71)
T ss_pred CCchhHHHHHH
Confidence 77764444333
No 74
>PRK14758 hypothetical protein; Provisional
Probab=21.84 E-value=98 Score=17.60 Aligned_cols=7 Identities=29% Similarity=0.714 Sum_probs=2.8
Q ss_pred HHHHHhh
Q 017548 13 LLSSVLA 19 (369)
Q Consensus 13 ~~~~~~~ 19 (369)
++|...+
T Consensus 15 IlCalia 21 (27)
T PRK14758 15 ILCALIA 21 (27)
T ss_pred HHHHHHH
Confidence 4444333
No 75
>TIGR02829 spore_III_AE stage III sporulation protein AE. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is found in a spore formation operon and is designated stage III sporulation protein AE.
Probab=21.03 E-value=1.7e+02 Score=28.55 Aligned_cols=19 Identities=37% Similarity=0.581 Sum_probs=11.3
Q ss_pred ChhhHHHHHHHHHHHHHhh
Q 017548 1 MERLILSSLLLLLLSSVLA 19 (369)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~ 19 (369)
|||+.+++++++++..+..
T Consensus 1 mkk~~~~~~~~~~~~~~~~ 19 (381)
T TIGR02829 1 MKKLIFILLLILILFLCFV 19 (381)
T ss_pred CchhHHHHHHHHHHHHhcc
Confidence 8988666655544444433
No 76
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=21.02 E-value=75 Score=30.16 Aligned_cols=17 Identities=41% Similarity=0.550 Sum_probs=11.6
Q ss_pred ChhhHHHHHHHHHHHHH
Q 017548 1 MERLILSSLLLLLLSSV 17 (369)
Q Consensus 1 m~~~~~~~~~~~~~~~~ 17 (369)
|+++++|++.|++|++.
T Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (343)
T PRK10936 1 MRKLLFLLLSLFLLSLT 17 (343)
T ss_pred ChhHHHHHHHHHHHHHH
Confidence 88887777766655543
No 77
>PRK15240 resistance to complement killing; Provisional
Probab=20.21 E-value=73 Score=27.66 Aligned_cols=12 Identities=58% Similarity=0.899 Sum_probs=7.5
Q ss_pred ChhhHHHHHHHH
Q 017548 1 MERLILSSLLLL 12 (369)
Q Consensus 1 m~~~~~~~~~~~ 12 (369)
||+.+++.++++
T Consensus 1 Mkk~~~~~~~~~ 12 (185)
T PRK15240 1 MKKIVLSSLLLS 12 (185)
T ss_pred CchhHHHHHHHH
Confidence 888766554433
Done!