RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 017551
(369 letters)
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome,
NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A
{Citrullus lanatus} PDB: 1sev_A
Length = 326
Score = 493 bits (1272), Expect = e-177
Identities = 273/300 (91%), Positives = 283/300 (94%)
Query: 13 RAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAV 72
RAKGGA GFKVAILGAAGGIGQPLAMLMK+NPLVSVLHLYDVVN PGVTADISHMDTGAV
Sbjct: 1 RAKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAV 60
Query: 73 VRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAT 132
VRGFLGQ QLE ALTGMDL+I+PAGVPRKPGMTRDDLF INAGIV+TLCEGIAKCCP A
Sbjct: 61 VRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAI 120
Query: 133 VNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPV 192
VNLISNPVNSTVPIAAEVFKKAGTYDPK+LLGVTMLDVVRANTFVAEVLGLDPRDVDVPV
Sbjct: 121 VNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPV 180
Query: 193 VGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAV 252
VGGHAGVTILPLLSQVKPP SFTQEE YLT+RIQNGGTEVVEAKAGAGSATLSMAYAAV
Sbjct: 181 VGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAV 240
Query: 253 KFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYESGLF 312
KFADACLRGLRGDAGV+ECAFV+SQVTELPFFASKVRLGR G EE++ LGPLNEYE
Sbjct: 241 KFADACLRGLRGDAGVIECAFVSSQVTELPFFASKVRLGRNGIEEVYSLGPLNEYERIGL 300
>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT;
1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*
Length = 314
Score = 477 bits (1231), Expect = e-171
Identities = 171/291 (58%), Positives = 220/291 (75%)
Query: 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 81
KVA+LGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG Q
Sbjct: 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61
Query: 82 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 141
L + L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL A+ CP+A + +ISNPVN
Sbjct: 62 LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 121
Query: 142 STVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTI 201
ST+PI AEVFKK G Y+P K+ GVT LD+VRAN FVAE+ GLDP V VPV+GGHAG TI
Sbjct: 122 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTI 181
Query: 202 LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRG 261
+PL+SQ P F Q++ LT RIQ GTEVV+AKAGAGSATLSMAYA +F + +
Sbjct: 182 IPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDA 241
Query: 262 LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYESGLF 312
+ G GVVEC+FV SQ T+ P+F++ + LG++G E+ +G ++ +E +
Sbjct: 242 MNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMI 292
>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.45A
{Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A*
1ib6_A* 1ie3_A* 4e0b_A*
Length = 312
Score = 462 bits (1190), Expect = e-164
Identities = 166/293 (56%), Positives = 206/293 (70%), Gaps = 4/293 (1%)
Query: 22 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQ 79
KVA+LGAAGGIGQ LA+L+K P S L LYD+ TPGV D+SH+ T ++GF G
Sbjct: 2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG- 60
Query: 80 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 139
AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + +AK CP A + +I+NP
Sbjct: 61 EDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120
Query: 140 VNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGV 199
VN+TV IAAEV KKAG YD KL GVT LD++R+NTFVAE+ G P +V+VPV+GGH+GV
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGV 180
Query: 200 TILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACL 259
TILPLLSQV P SFT++E LT RIQN GTEVVEAKAG GSATLSM AA +F + +
Sbjct: 181 TILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLV 239
Query: 260 RGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYESGLF 312
R L+G+ GVVECA+V FF+ + LG+ G EE +G L+ +E
Sbjct: 240 RALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNAL 292
>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2,
protein structur initiative; 1.90A {Porphyromonas
gingivalis}
Length = 343
Score = 170 bits (434), Expect = 3e-50
Identities = 74/305 (24%), Positives = 117/305 (38%), Gaps = 25/305 (8%)
Query: 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTGAVVRGFLGQ 79
K+ I+GAAG IG +A + L L LYD GV +I G
Sbjct: 10 KLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEI--RHCGFEGLNLTFT 67
Query: 80 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAT-VNLISN 138
++ ALT ++ G PRK GMTR+DL NA I L + I CP+ V +I N
Sbjct: 68 SDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFN 127
Query: 139 PVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA 197
P + T + +G P ++ + LD R + +A+ G+ V GGH
Sbjct: 128 PADITGLVT---LIYSG-LKPSQVTTLAGLDSTRLQSELAKHFGIKQSLVTNTRTYGGH- 182
Query: 198 GVTILPL----------LSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 247
G + L+ + T E+ L R+ GG +++ + S+ S
Sbjct: 183 GEQMAVFASTAKVNGTPLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLR--GRSSFQSP 240
Query: 248 AYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEY 307
+Y +++ A + G +V E A + + + G + NE
Sbjct: 241 SYVSIEMIRAAMGGEAFR--WPAGCYVNVPGFEHIMMAMETTITKDGVKHSDINQLGNEA 298
Query: 308 ESGLF 312
E
Sbjct: 299 ERAAL 303
>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent
interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula
marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A*
2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A
Length = 303
Score = 151 bits (385), Expect = 2e-43
Identities = 75/314 (23%), Positives = 127/314 (40%), Gaps = 50/314 (15%)
Query: 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT----ADISHMDTGAVVRGFL 77
KV+++GAAG +G + + + + D+ + T AD +H +
Sbjct: 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHG------IAYD 55
Query: 78 GQPQLE----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATV 133
++ G D+V+I AG+PR+PG TR DL NA I+ + + + +
Sbjct: 56 SNTRVRQGGYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYIS 115
Query: 134 NLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPV 192
SNPV+ + +AG ++++G LD R ++E ++V+ +
Sbjct: 116 LTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTI 171
Query: 193 VGGHAGVTILPLLSQV----KPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMA 248
+G H G +P+ S+V P F+ +E E L +Q +V+E K G+ A
Sbjct: 172 LGEH-GDAQVPVFSKVSVDGTDP-EFSGDEKEQLLGDLQESAMDVIERK---GATEWGPA 226
Query: 249 YAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEI 298
+A L L G+ G + F V LG G EEI
Sbjct: 227 RGVAHMVEAILHDTGEVLPASVKLEGEFGHEDT-----------AFGVPVSLGSNGVEEI 275
Query: 299 FQLGPLNEYESGLF 312
+ L++YE L
Sbjct: 276 VEW-DLDDYEQDLM 288
>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain,
oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus
jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*
Length = 313
Score = 147 bits (373), Expect = 1e-41
Identities = 72/318 (22%), Positives = 132/318 (41%), Gaps = 50/318 (15%)
Query: 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDTGAVVRGF- 76
KV I+GA+G +G A+L+ P + L L + G+ DI
Sbjct: 2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYD---ALAGTRSD 58
Query: 77 ----LGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAT 132
+ + + D+VII +GVPRK GM+R DL NA IV + IA+ C
Sbjct: 59 ANIYVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTK- 117
Query: 133 VNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVP 191
+ +I+NPV+ + ++ ++ G+ T LD +R +A+ G+ +V
Sbjct: 118 IFVITNPVD----VMTYKALVDSKFERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVRTR 173
Query: 192 VVGGHAGVTILPLLSQ-------VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT 244
++G H G +++PLLS ++ F + + + ++ G +++ K G +
Sbjct: 174 IIGEH-GDSMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIRLK---GGSE 229
Query: 245 LSMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQG 294
A A + + + G+ + + +P V++GR G
Sbjct: 230 FGPAAAILNVVRCIVNNEKRLLTLSAYVDGEFDGIRDVCIG-----VP-----VKIGRDG 279
Query: 295 AEEIFQLGPLNEYESGLF 312
EE+ + L++ E F
Sbjct: 280 IEEVVSI-ELDKDEIIAF 296
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious
diseases, csgid dehydrogenase, oxidoreductase, citric
acid cycle; 1.70A {Bacillus anthracis}
Length = 315
Score = 146 bits (371), Expect = 2e-41
Identities = 88/314 (28%), Positives = 141/314 (44%), Gaps = 46/314 (14%)
Query: 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA----DISHMDTGAVVRGFL 77
KV+++GA G G A L+ L V+ L D+ T D+ + V+GF
Sbjct: 10 KVSVIGA-GFTGATTAFLLAQKELADVV-LVDIPQLENPTKGKALDMLE---ASPVQGFD 64
Query: 78 GQPQLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134
+ D+V+I AG+ RKPGM+RDDL N+ I++++ IAK PNA +
Sbjct: 65 ANIIGTSDYADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIV 124
Query: 135 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 193
+++NPV+ K + ++++G +LD R TF+A+ L L +D+ V+
Sbjct: 125 VLTNPVD----AMTYSVFKEAGFPKERVIGQSGVLDTARFRTFIAQELNLSVKDITGFVL 180
Query: 194 GGHAGVTILPLLSQV----KPPCSF-TQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMA 248
GGH G ++PL+ P + +E E + R + GG E+V G GSA + A
Sbjct: 181 GGH-GDDMVPLVRYSYAGGIPLETLIPKERLEAIVERTRKGGGEIVG-LLGNGSAYYAPA 238
Query: 249 YAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEI 298
+ V+ +A L+ L G+ G + + V LG G E+I
Sbjct: 239 ASLVEMTEAILKDQRRVLPAIAYLEGEYGYSDL-----------YLGVPVILGGNGIEKI 287
Query: 299 FQLGPLNEYESGLF 312
+L L E
Sbjct: 288 IEL-ELLADEKEAL 300
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.55A
{Salinibacter ruber}
Length = 314
Score = 145 bits (369), Expect = 4e-41
Identities = 78/312 (25%), Positives = 136/312 (43%), Gaps = 44/312 (14%)
Query: 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
KV ++GA G +G +A + + + + D+ + G D+ + + GF +
Sbjct: 2 KVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRE---SSPIHGFDTR 57
Query: 80 PQLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 136
N D+ II AG+PR PGM+RDDL N IV + E + P++T+ ++
Sbjct: 58 VTGTNDYGPTEDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVV 117
Query: 137 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 195
+NP++ + V +A + +++G+ +LD R +F+AE L + RDV ++GG
Sbjct: 118 ANPLD----VMTYVAYEASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLMGG 173
Query: 196 HAGVTILPLLSQV----KPPCSF-TQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYA 250
H G T++PL P E + R + G E+V+ SA + A
Sbjct: 174 H-GDTMVPLPRYTTVGGIPVPQLIDDARIEEIVERTKGAGGEIVDLM--GTSAWYAPGAA 230
Query: 251 AVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQ 300
A + +A L+ G+ G+ + F V+LG G EE+ +
Sbjct: 231 AAEMTEAILKDNKRILPCAAYCDGEYGLDDL-----------FIGVPVKLGAGGVEEVIE 279
Query: 301 LGPLNEYESGLF 312
+ L+ E
Sbjct: 280 V-DLDADEKAQL 290
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle,
NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP:
c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*
Length = 310
Score = 144 bits (367), Expect = 9e-41
Identities = 89/312 (28%), Positives = 144/312 (46%), Gaps = 43/312 (13%)
Query: 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
K+ ++GA G +G A + L L L DVV G D+ V F +
Sbjct: 2 KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYE---SGPVGLFDTK 57
Query: 80 PQLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 136
N D+VII AG+PRKPGMTR+DL NAGIV+ + + I K N + ++
Sbjct: 58 VTGSNDYADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVV 117
Query: 137 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 195
SNP++ I V ++++G+ +LD R +F+A LG+ +D++ V+GG
Sbjct: 118 SNPLD----IMTHVAWVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVLGG 173
Query: 196 HAGVTILPLLSQV----KPPCSF-TQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYA 250
H G ++P++ P E + L R +NGG E+VE GSA + A +
Sbjct: 174 H-GDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEH-LKQGSAFYAPASS 231
Query: 251 AVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQ 300
V+ ++ + L G G+ + +P V+LGR G E+I++
Sbjct: 232 VVEMVESIVLDRKRVLPCAVGLEGQYGIDKTFV------GVP-----VKLGRNGVEQIYE 280
Query: 301 LGPLNEYESGLF 312
+ L++ + L
Sbjct: 281 I-NLDQADLDLL 291
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle;
HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5
d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A*
1uxi_A*
Length = 309
Score = 144 bits (366), Expect = 1e-40
Identities = 85/312 (27%), Positives = 138/312 (44%), Gaps = 44/312 (14%)
Query: 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
K++I+GA G +G A + L ++ L D+V G D+ + + GF +
Sbjct: 4 KISIIGA-GFVGSTTAHWLAAKELGDIV-LLDIVEGVPQGKALDLYE---ASPIEGFDVR 58
Query: 80 PQLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 136
N D++++ +G PRKPGM+R+DL +NA I R A PNA + ++
Sbjct: 59 VTGTNNYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMV 118
Query: 137 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 195
+NP++ + + + ++++G +LD R TF+A G+ DV ++GG
Sbjct: 119 NNPLD----AMTYLAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGG 174
Query: 196 HAGVTILPLLSQV----KPPCSF-TQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYA 250
H G ++PL P F + + R + GG E+V GSA + A A
Sbjct: 175 H-GDEMVPLPRFSCISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLL-KTGSAYYAPAAA 232
Query: 251 AVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQ 300
+ +A L+ L G G+ + F +P V LG G E+I +
Sbjct: 233 TAQMVEAVLKDKKRVMPVAAYLTGQYGLNDIYF------GVP-----VILGAGGVEKILE 281
Query: 301 LGPLNEYESGLF 312
L PLNE E L
Sbjct: 282 L-PLNEEEMALL 292
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase;
2.87A {Aeropyrum pernix}
Length = 308
Score = 144 bits (365), Expect = 2e-40
Identities = 77/314 (24%), Positives = 131/314 (41%), Gaps = 51/314 (16%)
Query: 23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQP 80
+ ILGA G +G A+++ + +L L G D++H A G +
Sbjct: 2 ITILGA-GKVGMATAVMLMMRGYDDLL-LIARTPGKPQGEALDLAH---AAAELGVDIRI 56
Query: 81 QLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 137
N + G D+V++ AG+ RKPGMTR+ L NA + L E I +A V + +
Sbjct: 57 SGSNSYEDMRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITT 116
Query: 138 NPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGGH 196
NPV+ V K + ++++G +LD R ++++ LG+ + V+ V+G H
Sbjct: 117 NPVD----AMTYVMYKKTGFPRERVIGFSGILDSARMAYYISQKLGVSFKSVNAIVLGMH 172
Query: 197 AGVTILPLLSQV----KPPCSF-TQEETEYLTNRIQNGGTEVVEAKAGA-----GSATLS 246
G + P+ P ++EE E + + N G ++ E + + + +
Sbjct: 173 -GQKMFPVPRLSSVGGVPLEHLMSKEEIEEVVSETVNAGAKITELRGYSSNYGPAAGLVL 231
Query: 247 MAYAAVKFAD--------ACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEI 298
A + D L+G G + V E+P +G+ G E I
Sbjct: 232 TVEAIKR--DSKRIYPYSLYLQGEYGYNDI---------VAEVP-----AVIGKSGIERI 275
Query: 299 FQLGPLNEYESGLF 312
+L PL E E F
Sbjct: 276 IEL-PLTEDEKRKF 288
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural
genomics consortium, SGC, oxidoreductase; HET: CIT APR;
2.20A {Cryptosporidium parvum}
Length = 328
Score = 143 bits (364), Expect = 3e-40
Identities = 98/317 (30%), Positives = 143/317 (45%), Gaps = 49/317 (15%)
Query: 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
K++I+GA G IG +A+L+ L V ++D++ G D++H + G +
Sbjct: 16 KISIIGA-GQIGSTIALLLGQKDLGDVY-MFDIIEGVPQGKALDLNH---CMALIGSPAK 70
Query: 80 PQLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 136
EN L D+VII AGVPRKP MTR DL +NA IV ++ E + K CPNA V I
Sbjct: 71 IFGENNYEYLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICI 130
Query: 137 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 195
+NP++ FK+ K+ G+ +LD R ++ LG+ P DV VVGG
Sbjct: 131 TNPLD----AMVYYFKEKSGIPANKVCGMSGVLDSARFRCNLSRALGVKPSDVSAIVVGG 186
Query: 196 HAGVTILPL----------LSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATL 245
H G ++PL LS T + + + GG E+VE GSA
Sbjct: 187 H-GDEMIPLTSSVTIGGILLSDFVEQGKITHSQINEIIKKTAFGGGEIVELL-KTGSAFY 244
Query: 246 SMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQGA 295
+ A +AV A A L+ L G V F V +G+ G
Sbjct: 245 APAASAVAMAQAYLKDSKSVLVCSTYLTGQYNVNNL-----------FVGVPVVIGKNGI 293
Query: 296 EEIFQLGPLNEYESGLF 312
E++ + L++ E LF
Sbjct: 294 EDVVIV-NLSDDEKSLF 309
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex,
oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum}
PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Length = 317
Score = 142 bits (361), Expect = 7e-40
Identities = 88/317 (27%), Positives = 142/317 (44%), Gaps = 49/317 (15%)
Query: 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
K+A++G+ G IG +A ++ + L V+ L+D+ G DI+H V+ G +
Sbjct: 6 KIAVIGS-GQIGGNIAYIVGKDNLADVV-LFDIAEGIPQGKALDITH---SMVMFGSTSK 60
Query: 80 PQLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 136
+ ++G D+VII A +P +P R +L NA I+ ++ EG+ K CPNA V I
Sbjct: 61 VIGTDDYADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICI 120
Query: 137 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 195
+NP++ + F+K K+ G+ +LD R TF+A+ G++ DV V+GG
Sbjct: 121 TNPLD----VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIGG 176
Query: 196 HAGVTILPL----------LSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATL 245
H G ++P LS TQE+ + + + EV + G+A
Sbjct: 177 H-GDGMVPATSSVSVGGVPLSSFIKQGLITQEQIDEIVCHTRIAWKEVADNL-KTGTAYF 234
Query: 246 SMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQGA 295
+ A AAVK A+A L+ GV +P +G+ G
Sbjct: 235 APAAAAVKMAEAYLKDKKAVVPCSAFCSNHYGVKGIYM------GVP-----TIIGKNGV 283
Query: 296 EEIFQLGPLNEYESGLF 312
E+I +L L E L
Sbjct: 284 EDILEL-DLTPLEQKLL 299
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid
cycle, structural genomics; HET: ADP; 2.25A {Brucella
melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Length = 324
Score = 140 bits (356), Expect = 4e-39
Identities = 93/317 (29%), Positives = 149/317 (47%), Gaps = 49/317 (15%)
Query: 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
K+A++G+ G IG LA L + L V+ L+D+ G DI+ + V GF +
Sbjct: 9 KIALIGS-GMIGGTLAHLAGLKELGDVV-LFDIAEGTPQGKGLDIAE---SSPVDGFDAK 63
Query: 80 PQLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 136
N A+ G D+VI+ AGVPRKPGM+RDDL IN ++ + GI K P A V I
Sbjct: 64 FTGANDYAAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICI 123
Query: 137 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 195
+NP++ +K K++G+ +LD R F++E + DV V V+GG
Sbjct: 124 TNPLD----AMVWALQKFSGLPAHKVVGMAGVLDSARFRYFLSEEFNVSVEDVTVFVLGG 179
Query: 196 HAGVTILPL----------LSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATL 245
H G +++PL L + +Q++ + + R ++GG E+V GSA
Sbjct: 180 H-GDSMVPLARYSTVAGIPLPDLVKMGWTSQDKLDKIIQRTRDGGAEIVGLL-KTGSAFY 237
Query: 246 SMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQGA 295
+ A +A++ A++ L+ L G GV + +P +G G
Sbjct: 238 APAASAIQMAESYLKDKKRVLPVAAQLSGQYGVKDMYV------GVP-----TVIGANGV 286
Query: 296 EEIFQLGPLNEYESGLF 312
E I ++ L++ E F
Sbjct: 287 ERIIEI-DLDKDEKAQF 302
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann
fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma
gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A*
1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Length = 331
Score = 140 bits (356), Expect = 5e-39
Identities = 90/323 (27%), Positives = 140/323 (43%), Gaps = 55/323 (17%)
Query: 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGF--- 76
KVA++G+ G IG + L + L V+ LYDVV G D+SH V
Sbjct: 11 KVAMIGS-GMIGGTMGYLCALRELADVV-LYDVVKGMPEGKALDLSH---VTSVVDTNVS 65
Query: 77 -LGQPQLENALTGMDLVIIPAGVPRKPGM-----TRDDLFNINAGIVRTLCEGIAKCCPN 130
+ E ALTG D VI+ AG+ + PG +R+DL N+ I+R + + I K CP
Sbjct: 66 VRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPK 125
Query: 131 ATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVD 189
+ +++NP++ +V +A + G+ MLD R +VA+ L + PRDV
Sbjct: 126 TFIIVVTNPLD----CMVKVMCEASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDVQ 181
Query: 190 VPVVGGHAGVTILPLLSQVK----------PPCSFTQEETEYLTNRIQNGGTEVVEAKAG 239
V+G H G ++PL+ + T+++ E + + G E+V G
Sbjct: 182 ATVIGTH-GDCMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVRFL-G 239
Query: 240 AGSATLSMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVR 289
GSA + A +AV A + L G+ G+ + F
Sbjct: 240 QGSAYYAPAASAVAMATSFLNDEKRVIPCSVYCNGEYGLKDM-----------FIGLPAV 288
Query: 290 LGRQGAEEIFQLGPLNEYESGLF 312
+G G E + +L LNE E F
Sbjct: 289 IGGAGIERVIEL-ELNEEEKKQF 310
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural
genomics, center structural genomics of infectious
diseases, csgid; 2.20A {Francisella tularensis}
Length = 321
Score = 139 bits (353), Expect = 9e-39
Identities = 94/318 (29%), Positives = 149/318 (46%), Gaps = 50/318 (15%)
Query: 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
K+ ++GA G IG LA L I L V+ L+D+ G D+ + G +
Sbjct: 7 KITLVGA-GNIGGTLAHLALIKQLGDVV-LFDIAQGMPNGKALDLLQ---TCPIEGVDFK 61
Query: 80 PQLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 136
+ N L D+VI+ AGVPRKPGM+RDDL IN +++T+ EGI CPNA V I
Sbjct: 62 VRGTNDYKDLENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICI 121
Query: 137 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 195
+NP++ I + +K K++G+ +LD R TF+A+ L + + V V+GG
Sbjct: 122 TNPLD----IMVNMLQKFSGVPDNKIVGMAGVLDSARFRTFLADELNVSVQQVQAYVMGG 177
Query: 196 HAGVTILPL----------LSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATL 245
H G T++PL L Q+ QE + + +R ++GG E+V GSA
Sbjct: 178 H-GDTMVPLTKMSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIVALL-KTGSAYY 235
Query: 246 SMAYAAVKFADACLRGLR-----------GDAGVVECAFVASQVTELPFFASKVRLGRQG 294
+ A A ++ A++ L+ + G G+ E FV +P + G
Sbjct: 236 APAAAGIQMAESFLKDKKMILPCAAKVKAGMYGLDEDLFVG-----VP-----TEISANG 285
Query: 295 AEEIFQLGPLNEYESGLF 312
I ++ +++ E
Sbjct: 286 VRPI-EV-EISDKEREQL 301
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase;
HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5
d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A
2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A*
1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Length = 322
Score = 136 bits (346), Expect = 1e-37
Identities = 83/322 (25%), Positives = 139/322 (43%), Gaps = 56/322 (17%)
Query: 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
K+ ++G+ G IG +A L+ L V+ L+D+V G D SH V+ +
Sbjct: 6 KIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSH---TNVMAYSNCK 60
Query: 80 PQLEN---ALTGMDLVIIPAGVPRKPGMT-----RDDLFNINAGIVRTLCEGIAKCCPNA 131
N L G D+VI+ AG + PG + RDDL +N I+ + I K CPNA
Sbjct: 61 VSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNA 120
Query: 132 TVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDV 190
+ +++NPV+ + ++ + K++G+ +LD R ++++ L + PRDV+
Sbjct: 121 FIIVVTNPVD----VMVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNA 176
Query: 191 PVVGGHAGVTILPL----------LSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 240
+VG H G ++ L L + + E E + +R N E+V
Sbjct: 177 HIVGAH-GNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNLH--- 232
Query: 241 GSATLSMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRL 290
S ++ A A ++ A++ L+ L G G + P V L
Sbjct: 233 ASPYVAPAAAIIEMAESYLKDLKKVLICSTLLEGQYGHSDI------FGGTP-----VVL 281
Query: 291 GRQGAEEIFQLGPLNEYESGLF 312
G G E++ +L LN E F
Sbjct: 282 GANGVEQVIEL-QLNSEEKAKF 302
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP
NAD; 2.50A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Length = 316
Score = 136 bits (345), Expect = 2e-37
Identities = 68/319 (21%), Positives = 120/319 (37%), Gaps = 54/319 (16%)
Query: 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
+V ++GA G +G + + + L D G D +H G V F +
Sbjct: 8 RVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNH---GKV---FAPK 60
Query: 80 PQLENA-----LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134
P DLV+I AG +KPG TR DL + N I R++ E +
Sbjct: 61 PVDIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFL 120
Query: 135 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 193
+ +NPV+ I K ++++G T+LD R + E + P++V ++
Sbjct: 121 VATNPVD----ILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYII 176
Query: 194 GGH--------AGVTI--LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 243
G H + I +P+ V+ Q++ E + +++ +++E K G+
Sbjct: 177 GEHGDTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKK---GAT 233
Query: 244 TLSMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQ 293
+A + A L L G G + +P + R
Sbjct: 234 YYGIAMGLARVTRAILHNENAILTVSAYLDGLYGERDVYI------GVP-----AVINRN 282
Query: 294 GAEEIFQLGPLNEYESGLF 312
G E+ ++ LN+ E F
Sbjct: 283 GIREVIEI-ELNDDEKNRF 300
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD;
2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Length = 318
Score = 135 bits (342), Expect = 4e-37
Identities = 66/318 (20%), Positives = 120/318 (37%), Gaps = 54/318 (16%)
Query: 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
KV ++G G +G A M + + DVV T G D+ F
Sbjct: 7 KVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLED---AQA---FTAP 59
Query: 80 PQLE----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 135
++ + DLV+I AG P+KPG +R DL N N I+ ++ + + + +
Sbjct: 60 KKIYSGEYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLV 119
Query: 136 ISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVG 194
+NPV+ I K + ++++G T LD R + + +DPR VD ++G
Sbjct: 120 AANPVD----ILTYATWKFSGFPKERVIGSGTSLDSSRLRVALGKQFNVDPRSVDAYIMG 175
Query: 195 GHAGVTILPLLSQVK----------PPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT 244
H G + S + ++ L + ++N +++ K G+
Sbjct: 176 EH-GDSEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIINLK---GATF 231
Query: 245 LSMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQG 294
+ A ++ + A LR + G G+ + P +G G
Sbjct: 232 YGIGTALMRISKAILRDENAVLPVGAYMDGQYGLNDIYI------GTP-----AIIGGTG 280
Query: 295 AEEIFQLGPLNEYESGLF 312
++I + PL+ E
Sbjct: 281 LKQIIES-PLSADELKKM 297
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A
{Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Length = 326
Score = 135 bits (342), Expect = 5e-37
Identities = 72/319 (22%), Positives = 123/319 (38%), Gaps = 54/319 (16%)
Query: 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
KVA++GA G +G A + + L + DV G D++H G F Q
Sbjct: 7 KVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNH---GKA---FAPQ 59
Query: 80 PQLENA-----LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134
P + D+V I AG +KPG TR +L N I + + + +
Sbjct: 60 PVKTSYGTYEDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFL 119
Query: 135 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 193
+ +NPV+ I K ++++G T LD R ++E G P++V ++
Sbjct: 120 VATNPVD----ILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAHII 175
Query: 194 GGH--------AGVTI--LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 243
G H + + +P+ V+ ++ QEE + + + ++N ++E K G+
Sbjct: 176 GEHGDTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKK---GAT 232
Query: 244 TLSMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQ 293
+A + + A L L G G + +P + R
Sbjct: 233 YYGVAMSLARITKAILHNENSILTVSTYLDGQYGADDVYI------GVP-----AVVNRG 281
Query: 294 GAEEIFQLGPLNEYESGLF 312
G I +L LNE E F
Sbjct: 282 GIAGITEL-NLNEKEKEQF 299
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold,
cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A
{Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Length = 326
Score = 134 bits (341), Expect = 8e-37
Identities = 68/318 (21%), Positives = 127/318 (39%), Gaps = 53/318 (16%)
Query: 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
KV ++G G +G A M + + + + D+ T G D+S+ F
Sbjct: 11 KVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSN---ALP---FTSP 63
Query: 80 PQLE----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 135
++ + DLV+I AG P+KPG TR DL N N I++++ + I N +
Sbjct: 64 KKIYSAEYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLV 123
Query: 136 ISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVG 194
+NPV+ I K + +++G T LD R +AE++ +D R V ++G
Sbjct: 124 AANPVD----ILTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMG 179
Query: 195 GH--------AGVTI--LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT 244
H + I + + VK +++ + +++ E+++ K G+
Sbjct: 180 EHGDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIKLK---GATF 236
Query: 245 LSMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQG 294
+A A + + A L + G G+ + P + R G
Sbjct: 237 YGIATALARISKAILNDENAVLPLSVYMDGQYGLNDIYI------GTP-----AVINRNG 285
Query: 295 AEEIFQLGPLNEYESGLF 312
+ I ++ PL ++E
Sbjct: 286 IQNILEI-PLTDHEEESM 302
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD,
oxidoreductase, phosphoprotein; 1.80A {Staphylococcus
aureus} PDB: 3d4p_A* 3h3j_A*
Length = 317
Score = 134 bits (339), Expect = 1e-36
Identities = 68/319 (21%), Positives = 121/319 (37%), Gaps = 55/319 (17%)
Query: 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
KV ++G G +G A + +V L + D+ G D+ H +
Sbjct: 8 KVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKH---ATP---YSPT 60
Query: 80 PQLENA-----LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134
A DLV+I AG +KPG TR DL + N I +++ + +
Sbjct: 61 TVRVKAGEYSDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFL 120
Query: 135 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 193
+ +NPV+ I A K ++++G T+LD R ++E + PR VD ++
Sbjct: 121 VATNPVD----ILAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQII 176
Query: 194 GGHAGVTILPLLSQVK----------PPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 243
G H G T LP+ S + + E + + ++ ++++AK G+
Sbjct: 177 GEH-GDTELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAK---GAT 232
Query: 244 TLSMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQ 293
+A + +A R L G+ + +P + R
Sbjct: 233 YYGVAMGLARITEAIFRNEDAVLTVSALLEGEYEEEDVY--IG----VP-----AVINRN 281
Query: 294 GAEEIFQLGPLNEYESGLF 312
G + ++ PLN+ E F
Sbjct: 282 GIRNVVEI-PLNDEEQSKF 299
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis,
hyperthermophiles, thermotoga MA protein stability; HET:
FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5
d.162.1.1
Length = 319
Score = 134 bits (339), Expect = 1e-36
Identities = 84/318 (26%), Positives = 133/318 (41%), Gaps = 53/318 (16%)
Query: 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
K+ I+G G +G A + + + L DV G D+ H G F +
Sbjct: 2 KIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIH---GTP---FTRR 54
Query: 80 PQLE----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 135
+ L G D+VI+ AGVP+KPG TR L NA +++ + ++K P++ V +
Sbjct: 55 ANIYAGDYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIV 114
Query: 136 ISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVG 194
++NPV+ + F K DP+K+ G T+LD R T +A+ G PR V V V+G
Sbjct: 115 VTNPVD----VLTYFFLKESGMDPRKVFGSGTVLDTARLRTLIAQHCGFSPRSVHVYVIG 170
Query: 195 GH--------AGVTI--LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT 244
H +G I +PL + + + E + + E++E K G+
Sbjct: 171 EHGDSEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEIIERK---GATH 227
Query: 245 LSMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQG 294
++A A ++ L GV + +P V LG+ G
Sbjct: 228 YAIALAVADIVESIFFDEKRVLTLSVYLEDYLGVKDLCI------SVP-----VTLGKHG 276
Query: 295 AEEIFQLGPLNEYESGLF 312
E I +L LNE E F
Sbjct: 277 VERILEL-NLNEEELEAF 293
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET:
NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5
d.162.1.1 PDB: 1lth_T*
Length = 319
Score = 134 bits (339), Expect = 1e-36
Identities = 66/322 (20%), Positives = 119/322 (36%), Gaps = 58/322 (18%)
Query: 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
K+A++GA G +G LA + + L D+ D+ H G+ F
Sbjct: 9 KLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQH---GSS---FYPT 61
Query: 80 PQLE-----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134
++ D+V+I AG +KPG +R +L I++ + + K PNA
Sbjct: 62 VSIDGSDDPEICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYM 121
Query: 135 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 193
LI+NPV+ IA V +K ++ G T LD R +A+ G++ ++V +
Sbjct: 122 LITNPVD----IATHVAQKLTGLPENQIFGSGTNLDSARLRFLIAQQTGVNVKNVHAYIA 177
Query: 194 GGH-------------AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 240
G H GV + ++ E + ++N +++ K
Sbjct: 178 GEHGDSEVPLWESATIGGVPMSDWTPLPGHDP-LDADKREEIHQEVKNAAYKIINGK--- 233
Query: 241 GSATLSMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRL 290
G+ ++ + V +A L L+ G+ + +P L
Sbjct: 234 GATNYAIGMSGVDIIEAVLHDTNRILPVSSMLKDFHGISDICM------SVP-----TLL 282
Query: 291 GRQGAEEIFQLGPLNEYESGLF 312
RQG P+++ E
Sbjct: 283 NRQGVNNTINT-PVSDKELAAL 303
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex,
fragment-based LEAD genera inhibitors; HET: 52C; 1.75A
{Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A*
4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A*
4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A*
5ldh_A* 1ldm_A* ...
Length = 331
Score = 133 bits (338), Expect = 2e-36
Identities = 68/321 (21%), Positives = 133/321 (41%), Gaps = 56/321 (17%)
Query: 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
K+ ++G G +G A+ + + L L L DV+ G D+ H G++ FL
Sbjct: 21 KITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQH---GSL---FLKT 73
Query: 80 PQLENA-----LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134
P++ ++ LVII AG ++ G +R +L N I + + + K P +
Sbjct: 74 PKIVSSKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLL 133
Query: 135 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 193
++SNPV+ I V K + +++G LD R + E LG+ P V+
Sbjct: 134 IVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVL 189
Query: 194 GGHAGVTILPLLSQV------------KPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAG 241
G H G + +P+ S V + +E+ + + ++ + EV++ K G
Sbjct: 190 GEH-GDSSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKLK---G 245
Query: 242 SATLSMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLG 291
+ ++ + A++ ++ ++G G+ E F++ +P LG
Sbjct: 246 YTSWAIGLSVADLAESIMKNLRRVHPISTMIKGLYGIKEDVFLS-----VP-----CILG 295
Query: 292 RQGAEEIFQLGPLNEYESGLF 312
+ G ++ ++ L E
Sbjct: 296 QNGISDVVKV-TLTPDEEARL 315
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle;
HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A*
3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A
Length = 310
Score = 133 bits (336), Expect = 2e-36
Identities = 65/320 (20%), Positives = 114/320 (35%), Gaps = 56/320 (17%)
Query: 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
KV I+G+ G +G A + + + + L D+ DI H F
Sbjct: 2 KVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATP------FAHP 54
Query: 80 PQLE----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 135
+ L G V++ AGV ++PG TR L + NA + + + + P A + +
Sbjct: 55 VWVWAGSYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLV 114
Query: 136 ISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVG 194
+NPV+ + +V P +++G T+LD R +AE L + P+ V V+G
Sbjct: 115 ATNPVD----VMTQVAYALSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLG 170
Query: 195 GHAGVTILPLLSQV------------KPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGS 242
H G + + + S + + E+ + ++ ++E K G+
Sbjct: 171 EH-GDSEVLVWSSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGK---GA 226
Query: 243 ATLSMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGR 292
+ + A L AGV+E + LP LG
Sbjct: 227 TYYGIGAGLARLVRAILTDEKGVYTVSAFTPEVAGVLEVSL------SLP-----RILGA 275
Query: 293 QGAEEIFQLGPLNEYESGLF 312
G L+ E
Sbjct: 276 GGVAGTVYP-SLSPEERAAL 294
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural
genomics, secsg, protein struc initiative, PSI,
oxidoreductase; 3.01A {Clostridium thermocellum} SCOP:
c.2.1.5 d.162.1.1
Length = 318
Score = 132 bits (334), Expect = 5e-36
Identities = 79/321 (24%), Positives = 134/321 (41%), Gaps = 58/321 (18%)
Query: 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
KVAI+GA G +G A M + + L L DV G DI+H G F+GQ
Sbjct: 9 KVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINH---GLP---FMGQ 61
Query: 80 PQLE----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 135
L + + D++++ AG RKPG TR DL N I + + + I K + + +
Sbjct: 62 MSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILV 121
Query: 136 ISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVG 194
+SNPV+ I + +K K++G T+LD +R ++E LG+D ++V ++G
Sbjct: 122 VSNPVD----IITYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVHGYIIG 177
Query: 195 GH-------------AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAG 241
H AG I + K FT+E+ + + ++ G +++ K G
Sbjct: 178 EHGDSQLPLWSCTHIAGKNINEYIDDPKCN--FTEEDKKKIAEDVKTAGATIIKNK---G 232
Query: 242 SATLSMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLG 291
+ +A + + L+ + G G+ + A LP +
Sbjct: 233 ATYYGIAVSINTIVETLLKNQNTIRTVGTVINGMYGIEDVAI------SLP-----SIVN 281
Query: 292 RQGAEEIFQLGPLNEYESGLF 312
+G +E+ Q L E
Sbjct: 282 SEGVQEVLQF-NLTPEEEEAL 301
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate
dehydrogenase, oxidoreductase, ubiquitin-protein L
unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Length = 303
Score = 128 bits (324), Expect = 1e-34
Identities = 53/299 (17%), Positives = 99/299 (33%), Gaps = 44/299 (14%)
Query: 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTPGVTADISHMDTGAVVRGFLGQP 80
K+ ++G G +G + + + L L D+ T G T D+ + V
Sbjct: 16 KITVVGG-GELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEIS--KDL 72
Query: 81 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV 140
+A +VI + D+ N + R L + ++ + + S P
Sbjct: 73 ---SASAHSKVVIFTVN-SLGSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQP- 127
Query: 141 NSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGV 199
V I V K T+ +++G+ LD R + VL +V V+G G
Sbjct: 128 ---VEIMTYVTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKEVWVIGEQ-GE 183
Query: 200 TILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACL 259
+ S + + ++ N E++ K G + S+ + D+ +
Sbjct: 184 DKVLTWSGQEE------VVSHTSQVQLSNRAMELLRVK---GQRSWSVGLSVADMVDSIV 234
Query: 260 RG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYE 308
+G + F++ LP LG G E+ + L E
Sbjct: 235 NNKKKVHSVSALAKGYYDINSEVFLS-----LP-----CILGTNGVSEVIKT-TLKEDT 282
>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD;
2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*
Length = 333
Score = 129 bits (325), Expect = 1e-34
Identities = 67/316 (21%), Positives = 117/316 (37%), Gaps = 41/316 (12%)
Query: 22 KVAILGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTP----GVTADISHMDTG 70
+V + GAAG I L + K P++ L L D+ GV ++ D
Sbjct: 5 RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPII--LVLLDITPMMGVLDGVLMEL--QDCA 60
Query: 71 AV-VRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP 129
++ + + E A +D+ I+ +PR+ GM R DL N I + + K
Sbjct: 61 LPLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAK 120
Query: 130 NAT-VNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDV 188
+ V ++ NP N+ A+ K A + + +T LD RA +A LG+ DV
Sbjct: 121 KSVKVIVVGNPANTNCLTAS---KSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDV 177
Query: 189 DVPVVGGHAGVTILPLLSQ-----------VKPPCSFTQEETEYLTNRIQNGGTEVVEAK 237
++ G+ T P ++ V +Q G V++A+
Sbjct: 178 KNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKAR 237
Query: 238 AGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQ-----VTELPFFASKVRLGR 292
SA +S A A G G + S V + ++ V +
Sbjct: 238 -KLSSA-MSAAKAICDHVRDIWFG--TPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIKD 293
Query: 293 QGAEEIFQLGPLNEYE 308
+ + + L P+N++
Sbjct: 294 KTWKIVEGL-PINDFS 308
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance,
NAD, cytoplasm, mesophilic, glycolysis; 2.50A
{Deinococcus radiodurans}
Length = 304
Score = 125 bits (316), Expect = 1e-33
Identities = 68/313 (21%), Positives = 114/313 (36%), Gaps = 48/313 (15%)
Query: 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQ 79
KV ++G G +G A + + S L L D DI+H
Sbjct: 2 KVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHA------APVSHG 54
Query: 80 PQLE----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 135
++ + L +VI+ AG +KPG +R DL NA I R L I + P+A + +
Sbjct: 55 TRVWHGGHSELADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLV 114
Query: 136 ISNPVNSTVPIAAEVFKKAGTYDPK-KLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 193
SNPV+ + ++ + P ++G T+LD R +A+ G+D V+
Sbjct: 115 TSNPVD----LLTDLATQ---LAPGQPVIGSGTVLDSARFRHLMAQHAGVDGTHAHGYVL 167
Query: 194 GGH-------------AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 240
G H AG+ + + P + ++ + +N ++E K
Sbjct: 168 GEHGDSEVLAWSSAMVAGMPVADFMQAQNLP--WNEQVRAKIDEGTRNAAASIIEGK--- 222
Query: 241 GSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASK-VRLGRQGAEEIF 299
+ + A + +A LR R V++ E S +GRQG
Sbjct: 223 RATYYGIGAALARITEAVLRDRR------AVLTVSAPTPEYGVSLSLPRVVGRQGVLSTL 276
Query: 300 QLGPLNEYESGLF 312
L E
Sbjct: 277 HP-KLTGDEQQKL 288
>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase
(NADP+), activated by LIG chloroplastic malate
dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5
d.162.1.1 PDB: 1civ_A*
Length = 375
Score = 126 bits (318), Expect = 3e-33
Identities = 64/313 (20%), Positives = 104/313 (33%), Gaps = 38/313 (12%)
Query: 22 KVAILGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTP----GVTADISHMDTG 70
+A+ GAAG I L + + P+ L L + GV ++ D+
Sbjct: 34 NIAVSGAAGMISNHLLFKLASGEVFGQDQPIA--LKLLGSERSFQALEGVAMEL--EDSL 89
Query: 71 AV-VRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP 129
+R +D ++ PR PGM R L +IN I + +
Sbjct: 90 YPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVAS 149
Query: 130 -NATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDV 188
N V ++ NP N+ I K A K +T LD RA +A G+ V
Sbjct: 150 KNVKVLVVGNPCNTNALICL---KNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDKV 206
Query: 189 DVPVVGGHAGVTILPLLSQ-------VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAG 241
+ G+ T +P VK T+ E T +Q G +++ G
Sbjct: 207 SNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKW-GRS 265
Query: 242 SATLSMAYAAVKFADACLRGLRGDAG-VVECAFVASQ-----VTELPFFASKVRLGRQGA 295
SA S A + + + G V + + E F+ R G
Sbjct: 266 SA-ASTAVSIADAIKSLVTP--TPEGDWFSTG-VYTTGNPYGIAEDIVFSMPCRSKGDGD 321
Query: 296 EEIFQLGPLNEYE 308
E+ +++
Sbjct: 322 YELATDVSNDDFL 334
>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex,
oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus}
SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A*
1bdm_A* 1wze_A* 1wzi_A*
Length = 327
Score = 124 bits (314), Expect = 5e-33
Identities = 78/310 (25%), Positives = 122/310 (39%), Gaps = 35/310 (11%)
Query: 22 KVAILGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTPGVTADISHMDT----G 70
+VA+ GAAG IG L ML K P++ L L ++ + M+
Sbjct: 6 RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVI--LQLLEIPQAMKA-LEGVVMELEDCAF 62
Query: 71 AVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPN 130
++ G + A D ++ PRK GM R DL +N I +A+
Sbjct: 63 PLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKK 122
Query: 131 AT-VNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD 189
V ++ NP N+ IA K A +P+ +T LD RA +A+ G +
Sbjct: 123 DVKVLVVGNPANTNALIAY---KNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIR 179
Query: 190 VPVVGGHAGVTILPLLSQV----KPPCSFTQEE--TEYLTNRIQNGGTEVVEAKAGAGSA 243
V G+ T+ P L +P E + + G +++A+ GA SA
Sbjct: 180 RMTVWGNHSSTMFPDLFHAEVDGRPALELVDMEWYEKVFIPTVAQRGAAIIQAR-GASSA 238
Query: 244 TLSMAYAAVK-FADACLRGLRGDAGVVECAFVASQ----VTELPFFASKVRLGRQGAEEI 298
S A AA++ D L GD V A V SQ + E ++ V + GA +
Sbjct: 239 -ASAANAAIEHIRDWALGTPEGD--WVSMA-VPSQGEYGIPEGIVYSFPVT-AKDGAYRV 293
Query: 299 FQLGPLNEYE 308
+ +NE+
Sbjct: 294 VEGLEINEFA 303
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET:
ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5
d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Length = 294
Score = 123 bits (311), Expect = 6e-33
Identities = 65/309 (21%), Positives = 124/309 (40%), Gaps = 50/309 (16%)
Query: 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
K+ +GA G +G A +N V + L D+ G D++H A
Sbjct: 2 KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAH---AAAGIDK--Y 55
Query: 80 PQLENA-----LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134
P++ L G +++++ AG+ RKPGMTR DL + NAGI++ + + I + P + +
Sbjct: 56 PKIVGGADYSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKIL 115
Query: 135 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 193
+++NP++ + + K ++ G+ LD R + + R ++
Sbjct: 116 VVTNPMD----VMTYIMWKESGKPRNEVFGMGNQLDSQRLKERLYNAGARNIRRAW--II 169
Query: 194 GGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVK 253
G H G ++ S + + E + N ++ EV++ K G+ A A +
Sbjct: 170 GEH-GDSMFVAKSLADFDG---EVDWEAVENDVRFVAAEVIKRK---GATIFGPAVAIYR 222
Query: 254 FADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGP 303
A + L+G+ G+ +LG+ GA E+ +
Sbjct: 223 MVKAVVEDTGEIIPTSMILQGEYGIENV-----------AVGVPAKLGKNGA-EVADI-K 269
Query: 304 LNEYESGLF 312
L++ E
Sbjct: 270 LSDEEIEKL 278
>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A
{Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB:
1b8u_A* 1b8v_A* 3d5t_A
Length = 329
Score = 123 bits (311), Expect = 1e-32
Identities = 64/253 (25%), Positives = 96/253 (37%), Gaps = 31/253 (12%)
Query: 22 KVAILGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTP------GVTADISHMD 68
+VA+ GAAG I L ML K P++ L L ++ N GV +I D
Sbjct: 7 RVAVTGAAGQICYSLLFRIANGDMLGKDQPVI--LQLLEIPNEKAQKALQGVMMEI--DD 62
Query: 69 TGA-VVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC 127
++ G A D+ ++ PR PGM R DL NA I + I
Sbjct: 63 CAFPLLAGMTAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAV 122
Query: 128 C-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPR 186
N V ++ NP N+ IA K A + K + LD RA + +A G
Sbjct: 123 ASRNIKVLVVGNPANTNAYIAM---KSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKPVS 179
Query: 187 DVDVPVVGGHAGVTILPLLSQ-------VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAG 239
++ V G+ T+ VK + + + G +++A+ G
Sbjct: 180 SIEKLFVWGNHSPTMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIIDAR-G 238
Query: 240 AGSATLSMAYAAV 252
SA S A AA+
Sbjct: 239 VSSA-ASAANAAI 250
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor;
HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1
Length = 330
Score = 120 bits (304), Expect = 1e-31
Identities = 49/252 (19%), Positives = 88/252 (34%), Gaps = 25/252 (9%)
Query: 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
K+ ++G +G A+ + + L + L DV+ G D+ H G++ FL
Sbjct: 23 KITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEH---GSL---FLHT 75
Query: 80 PQLE-----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134
++ + G LV+I AG ++ G +R +L N I + + I K P+
Sbjct: 76 AKIVSGKDYSVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKE 135
Query: 135 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 193
L + K +++G LD R + E LG+ V V+
Sbjct: 136 LHPELGT----DKNKQDWKLSGLPMHRIIGSGCNLDSARFRYLMGERLGVHSCLVIGWVI 191
Query: 194 GGHAGVTILPLLSQV---KPPCSF--TQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMA 248
G H G ++ + S + K + E L VV +
Sbjct: 192 GQH-GDSVPSVWSGMWDAKLHKDVVDSAYEVIKLKGYTSWAIGLVVSNPVDVLTYVAWKG 250
Query: 249 YAAVKFADACLR 260
+ A ++
Sbjct: 251 CSVADLAQTIMK 262
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase;
L-2-hydroxycarboxylate dehydrogenase, L-lactate
dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD;
2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1
Length = 309
Score = 119 bits (302), Expect = 2e-31
Identities = 60/311 (19%), Positives = 105/311 (33%), Gaps = 42/311 (13%)
Query: 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQ 79
K+ I+G G +G +A + + D D L
Sbjct: 3 KIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDA------MANLEA 55
Query: 80 PQLENA-----LTGMDLVIIPAGVPR----KPGMTRDDLFNINAGIVRTLCEGIAKCCPN 130
L D+VI G + P R + +V+++ + + +
Sbjct: 56 HGNIVINDWAALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFH 115
Query: 131 ATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVD 189
+ +ISNPV+ + +F+ + K++G T+LD R V E LDPR V
Sbjct: 116 GVLVVISNPVD----VITALFQHVTGFPAHKVIGTGTLLDTARMQRAVGEAFDLDPRSVS 171
Query: 190 VPVVGGHAGVTILPLLSQV----KPPCSFTQEETEYLTN---RIQNGGTEVVEAKAGAGS 242
+G H G + S V +P + L + GG V+ K G
Sbjct: 172 GYNLGEH-GNSQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKGGFTVLNGK---GY 227
Query: 243 ATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASK-VRLGRQGAEEIFQL 301
+ +A +A++ A A + V+++ ++ + S +GR G L
Sbjct: 228 TSYGVATSAIRIAKAVMADAH------AELVVSNRRDDMGMYLSYPAIIGRDGVLAETTL 281
Query: 302 GPLNEYESGLF 312
L E
Sbjct: 282 -DLTTDEQEKL 291
>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+,
maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga
maritima} SCOP: c.2.1.5 d.162.1.2
Length = 480
Score = 53.7 bits (128), Expect = 4e-08
Identities = 40/210 (19%), Positives = 64/210 (30%), Gaps = 45/210 (21%)
Query: 19 AGFKVAILGAAGGIGQP---LAMLMKINPL-VSVLHLYDV----VNTPGVTADISHMDTG 70
K+ I+GA G ++ L K L S + L D+ ++ A + G
Sbjct: 2 PSVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVG 60
Query: 71 AVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRT----------- 119
A ++ F L++ + D VI A V + + G R
Sbjct: 61 ADLK-FEKTMNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSD 119
Query: 120 ---------------LCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG 164
+ I K P A +NP+ + + P K +G
Sbjct: 120 YYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEG----TTLVTRTV---PIKAVG 172
Query: 165 VTMLDVVRANTFVAEVLGLDPRDVDVPVVG 194
+ E LGL+ VD V G
Sbjct: 173 FC--HGHYGVMEIVEKLGLEEEKVDWQVAG 200
>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown
function, glycosidase, hydrolase, manganese,
metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}
Length = 450
Score = 51.3 bits (122), Expect = 2e-07
Identities = 35/204 (17%), Positives = 64/204 (31%), Gaps = 28/204 (13%)
Query: 19 AGFKVAILGAAGGIG---QPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVR 74
K+A +G G G ++ L + + LYD+ I + R
Sbjct: 4 DQIKIAYIGG-GSQGWARSLMSDLSIDERMSGTVALYDLDFEAAQKNEVIGNHSGNGRWR 62
Query: 75 GFLGQPQLENALTGMDLVIIPAGV------------PRKPGMTRDDLFNINAG------- 115
+ L+ AL+ D+VII P + G+ + + G
Sbjct: 63 -YEAVSTLKKALSAADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLR 121
Query: 116 ---IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVR 172
I + I P + V +NP++ + +VF + T +
Sbjct: 122 AVPIFAEIARAIRDYAPESWVINYTNPMSVCTRVLYKVFPGIKAIGCCHEVFGTQKLLAE 181
Query: 173 ANTFVAEVLGLDPRDVDVPVVGGH 196
T + D+ V V+G +
Sbjct: 182 MVTERLGIEVPRREDIRVNVLGIN 205
>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein
structure initiative, MCSG glucosidase, NAD-dependent;
HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5
d.162.1.2
Length = 472
Score = 50.9 bits (121), Expect = 4e-07
Identities = 39/251 (15%), Positives = 75/251 (29%), Gaps = 42/251 (16%)
Query: 8 RQAKCRAKGGAAGFKVAILGAAGGIGQP---LAMLMKINPL-VSVLHLYDV----VNTPG 59
++ F + I G G P L +L + + L LYD +
Sbjct: 16 ENLYFQSNMKKKSFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIA 74
Query: 60 VTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRT 119
D+ + + F E A T +D V+ V + D+ + G+V
Sbjct: 75 GACDVFIREKAPDIE-FAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQ 133
Query: 120 --------------------LCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDP 159
+ + + K P+A + SNP +
Sbjct: 134 ETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLRPN------ 187
Query: 160 KKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEET 219
K+L + + V +A++LGL R + + G+ + ++ +
Sbjct: 188 SKILNICDM-PVGIEDRMAQILGLSSRKE---MKVRYYGLNHFGWWTSIQDQE--GNDLM 241
Query: 220 EYLTNRIQNGG 230
L + G
Sbjct: 242 PKLKEHVSQYG 252
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.7 bits (118), Expect = 1e-06
Identities = 38/224 (16%), Positives = 63/224 (28%), Gaps = 82/224 (36%)
Query: 143 TVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTI- 201
T A +V+ +A + K G ++LD+V N P ++ + GG G I
Sbjct: 1638 TSKAAQDVWNRADNH-FKDTYGFSILDIVINN----------PVNLTI-HFGGEKGKRIR 1685
Query: 202 ---LPLLSQVKPPCSFTQEE-----TEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVK 253
++ + E+ E+ T+ ++ A A M AA
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAA-- 1743
Query: 254 FADACLRGLRGDAGVVECAFVA--SQVTELPFFASKVRLGRQGAEEIFQLGPLNEYESGL 311
L+ + A A S LG EY + L
Sbjct: 1744 -----FEDLKSKGLIPADATFAGHS-------------LG--------------EY-AAL 1770
Query: 312 FC---------LLHLCFQDWLGESEERVSWKHSKGHLLQQEMKR 346
L+ + F R G +Q + R
Sbjct: 1771 ASLADVMSIESLVEVVFY--------R-------GMTMQVAVPR 1799
Score = 45.0 bits (106), Expect = 3e-05
Identities = 46/254 (18%), Positives = 81/254 (31%), Gaps = 98/254 (38%)
Query: 29 AGGIGQPLAML--------------MKIN---PLVSVLHLYDVVNTPGVTADISHMDTGA 71
G P ML K N P + + +VN ++
Sbjct: 329 ENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS-LVNGA------KNL---- 377
Query: 72 VVRGFLGQPQLENALTGMDLVI----IPAG-----VP---RKPGMTRDDLFNINAGIVRT 119
VV G PQ +L G++L + P+G +P RK R
Sbjct: 378 VVSGP---PQ---SLYGLNLTLRKAKAPSGLDQSRIPFSERKL-----------KFSNRF 420
Query: 120 LCEGIAKCCPNATVNLISNPVNS------TVPIAAEVFKKAGTYDPKKLLGVTMLDVVRA 173
L P +++P +S + I ++ K +++ K + + + D
Sbjct: 421 L--------P------VASPFHSHLLVPASDLINKDLVKNNVSFNAKD-IQIPVYD---- 461
Query: 174 NTFVAEVLGLDPRDVDVPVVGGHAG-VTILPLL--SQVKPPCS----F---TQEETEYLT 223
TF G D R + + + LP+ + + + F LT
Sbjct: 462 -TFD----GSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLT 516
Query: 224 NRIQNG-GTEVVEA 236
+R ++G G V+ A
Sbjct: 517 HRNKDGTGVRVIVA 530
Score = 42.7 bits (100), Expect = 2e-04
Identities = 49/254 (19%), Positives = 74/254 (29%), Gaps = 83/254 (32%)
Query: 31 GIGQPLAMLMKINPLVSVLHLYDVVNTPGV-----TADISHMDT-G----AVVR------ 74
G Q M M LY + AD DT G +V
Sbjct: 1625 GS-QEQGMGM---------DLYK--TSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNL 1672
Query: 75 -----GFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC- 128
G G+ EN + M I G + + +F + + E
Sbjct: 1673 TIHFGGEKGKRIREN-YSAMIFETIVDGKLK-----TEKIF-------KEINEHSTSYTF 1719
Query: 129 --PNATVNLISN--PVNSTVPIAA-EVFKKAGTYDPKKL-----LG----------V--- 165
++ P + + AA E K G LG V
Sbjct: 1720 RSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSI 1779
Query: 166 -TMLDVV--RANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYL 222
++++VV R T V PRD + + I P +V SF+QE +Y+
Sbjct: 1780 ESLVEVVFYRGMTMQVAV----PRDELGR--SNYGMIAINP--GRVAA--SFSQEALQYV 1829
Query: 223 TNRIQNGGTEVVEA 236
R+ +VE
Sbjct: 1830 VERVGKRTGWLVEI 1843
Score = 34.3 bits (78), Expect = 0.070
Identities = 72/411 (17%), Positives = 118/411 (28%), Gaps = 134/411 (32%)
Query: 2 EENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT 61
+ NS L +A G A VAI G G L LY + V
Sbjct: 140 KSNSALFRA---VGEGNAQL-VAIFGGQGNTDDYFEEL---------RDLYQTYH-VLVG 185
Query: 62 ADISHMDTGAVVRGFLGQPQLENAL--TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRT 119
I + + + G++++ P T D +
Sbjct: 186 DLIKFS--AETLSELIRTTLDAEKVFTQGLNIL----EWLENPSNTPDKDY--------- 230
Query: 120 LCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFV-A 178
L+S P+ + P L+GV L A+ V A
Sbjct: 231 ---------------LLSIPI--SCP----------------LIGVIQL----AHYVVTA 253
Query: 179 EVLGLDPRDVDVPVVG--GH-AGVTILPLLSQVKPPCSFTQEETEYLTN--RIQNGGTEV 233
++LG P ++ + G GH G+ +++ SF + +T I G
Sbjct: 254 KLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI---GVRC 310
Query: 234 VEA---------------KAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQV 278
EA + G + M ++ L + V+ +V
Sbjct: 311 YEAYPNTSLPPSILEDSLENNEGVPS-PM--LSI-------SNLTQEQ--VQ-DYVNKTN 357
Query: 279 TELPFFASKVRLGRQGAEEIFQL-GPLNEYES--GLFCLLH-LCFQDWLGESE----ER- 329
+ LP +V + + + GP +S GL L L +S ER
Sbjct: 358 SHLP-AGKQVEISLVNGAKNLVVSGP---PQSLYGLNLTLRKAKAPSGLDQSRIPFSERK 413
Query: 330 --VSWK--------HSKGHLLQQEMKRCQEKFHRLSFFSLESPS---PVIS 367
S + HS HLL + + + S + PV
Sbjct: 414 LKFSNRFLPVASPFHS--HLLVPASDLINKDLVKNN-VSFNAKDIQIPVYD 461
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.2 bits (111), Expect = 7e-06
Identities = 50/346 (14%), Positives = 86/346 (24%), Gaps = 133/346 (38%)
Query: 72 VVRGFLGQP--QLENALT-----------GMD------LVIIPAGVPRKPGMTRDDLFNI 112
V R QP +L AL G+ + V + F I
Sbjct: 131 VSRL---QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA---LDVCLSYKVQCKMDFKI 184
Query: 113 ---NAGIVRT---LCEGIAKCCPNATVNLISNPVNS-TVPIAAEVFK-------KAGTYD 158
N + + E + K N S +S + + + K+ Y
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY- 243
Query: 159 PKKLLGVTMLD------VVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC 212
LL +L A ++L L R V A T + L
Sbjct: 244 ENCLL---VLLNVQNAKAWNAFNLSCKIL-LTTRFKQVTDFLSAATTTHISL---DHHSM 296
Query: 213 SFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA 272
+ T +E + L
Sbjct: 297 TLTPDEVKSL-------------------------------LLK---------------- 309
Query: 273 FVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDWLGESEERVSW 332
++ + +LP E+ P ++ +D L + W
Sbjct: 310 YLDCRPQDLP-------------REVLTTNPR------RLSIIAESIRDGLATWDN---W 347
Query: 333 KHSKGHLLQQEMKRC---------QEKFHRLSFFSLES--PSPVIS 367
KH L ++ ++ F RLS F + P+ ++S
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS 393
Score = 35.2 bits (80), Expect = 0.038
Identities = 43/285 (15%), Positives = 74/285 (25%), Gaps = 96/285 (33%)
Query: 5 SCLRQAKCRAKG--GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA 62
+ + C + FK+ L P +L + L+ + P T+
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNL-KNCNSPETVLEMLQKLLYQI-------DPNWTS 215
Query: 63 DISHM--------DTGAVVRGFLGQPQLENALTGMD-----------------LVIIPAG 97
H A +R L EN L + L+
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT---- 271
Query: 98 VPRKPGMTRD----DLFNINAGIVRTLCEGIAKCCPNATVNLISN---------P--VNS 142
TR D + +L P+ +L+ P V +
Sbjct: 272 -------TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324
Query: 143 TVP-----IAAEVFKKAGTYDP------KKL-----LGVTMLD--VVRANTFVAEVLGLD 184
T P IA + T+D KL + +L+ R F L +
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM-FDR--LSVF 381
Query: 185 PRDVDVPVVGGHAGVTILPLL-SQVKPPCSFTQEETEYLTNRIQN 228
P +P +L L+ V + + N++
Sbjct: 382 PPSAHIP-------TILLSLIWFDVIK------SDVMVVVNKLHK 413
>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI,
protein structure initi midwest center for structural
genomics; 2.31A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.2
Length = 450
Score = 45.9 bits (108), Expect = 1e-05
Identities = 33/204 (16%), Positives = 63/204 (30%), Gaps = 37/204 (18%)
Query: 20 GFKVAILGA----AGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM-----DTG 70
K+A +G + + L P V L L D+ + + +
Sbjct: 7 RLKIATIGGGSSYTPELVEGLIKRYHELP-VGELWLVDIPEGKEKLEIVGALAKRMVEKA 65
Query: 71 AVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRT----------- 119
V AL G D V V +D+ + G++
Sbjct: 66 GVPIEIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKG 125
Query: 120 ---------LCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDV 170
+ + + CP+A + +NP K+ +K++G+ +
Sbjct: 126 LRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAVLRYTKQ------EKVVGLCNV-P 178
Query: 171 VRANTFVAEVLGLDPRDVDVPVVG 194
+ VA++LG+D V + G
Sbjct: 179 IGMRMGVAKLLGVDADRVHIDFAG 202
>1vjt_A Alpha-glucosidase; TM0752, structural genomics, JCSG, PSI, P
structure initiative, joint center for structural
genomics, hydrolase; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.5 d.162.1.2
Length = 483
Score = 36.4 bits (83), Expect = 0.012
Identities = 40/217 (18%), Positives = 68/217 (31%), Gaps = 55/217 (25%)
Query: 22 KVAILGAAGGIGQPLAMLMKI------NPLVSVLHLYDV----VNTPGVTADISHMDTGA 71
K++I+GA G + L ++ I + + +++ DV +N + A + +
Sbjct: 14 KISIIGA-GSVRFALQLVGDIAQTEELSREDTHIYMMDVHERRLNASYILARKYVEELNS 72
Query: 72 VVRGFLGQPQLENALTGMDLVI--IPAGVPRKPGMTRDDL-------------------- 109
V+ + L+ A+ G D +I PR
Sbjct: 73 PVK-IVKTSSLDEAIDGADFIINTAYPYDPRYHDSGSQRWDEVTKVGEKHGYYRGIDSQE 131
Query: 110 FNINAGIVRTL------------CEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTY 157
N+ + L E + K P A + +NPV
Sbjct: 132 LNMVSTYTYVLSSYPDMKLALEIAEKMKKMAPKAYLMQTANPVFEITQAVRRWTG----- 186
Query: 158 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG 194
++G V V E L LDP +VD V G
Sbjct: 187 --ANIVG--FCHGVAGVYEVFEKLDLDPEEVDWQVAG 219
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 35.7 bits (82), Expect = 0.017
Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 4/97 (4%)
Query: 22 KVAILGAAGGIGQPLAM-LMKINPLVSVLHLYDVVNTPGVTADISHM-DTGA-VVRGFLG 78
+V I+G G IG+ + + + VL +VV+ + + GA ++ L
Sbjct: 6 RVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLD 65
Query: 79 QPQ-LENALTGMDLVIIPAGVPRKPGMTRDDLFNINA 114
Q L +AL +D+VI + L + A
Sbjct: 66 DHQRLVDALKQVDVVISALAGGVLSHHILEQLKLVEA 102
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics,
APC7755, NADP, P protein structure initiative; HET: MSE
NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 35.0 bits (81), Expect = 0.021
Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 7/86 (8%)
Query: 22 KVAILGAAGGIGQPLA-MLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQP 80
+V ++GA G + + L L + V ++ +V L +
Sbjct: 23 RVLVVGANGKVARYLLSELKNKGHEPVAM-----VRNEEQGPELRERGASDIVVANLEED 77
Query: 81 QLENALTGMDLVIIPAGVPRKPGMTR 106
+A +D V+ AG G +
Sbjct: 78 -FSHAFASIDAVVFAAGSGPHTGADK 102
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase,
oxidoreductase, SDR, cardenolides, cardiac glycosides;
HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Length = 364
Score = 34.3 bits (78), Expect = 0.059
Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 3/111 (2%)
Query: 22 KVA-ILGAAGGIGQPLA-MLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ 79
VA I+G G IG LA +L + +Y V A V
Sbjct: 2 SVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTR-PAWHEDNPINYVQCDISDP 60
Query: 80 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPN 130
+ L+ + V V T + N+ + R + + + CPN
Sbjct: 61 DDSQAKLSPLTDVTHVFYVTWANRSTEQENCEANSKMFRNVLDAVIPNCPN 111
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, oxidoreductase; HET: NAP;
1.80A {Clarkia breweri}
Length = 321
Score = 33.4 bits (76), Expect = 0.090
Identities = 12/83 (14%), Positives = 28/83 (33%), Gaps = 5/83 (6%)
Query: 22 KVAILGAAGGIGQPLAM-LMKINPLVSVLHLYDVVNTPGVTADI--SHMDTGAVVRG--F 76
K+ I G G IG+ + + + + ++ + + G +
Sbjct: 6 KIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEM 65
Query: 77 LGQPQLENALTGMDLVIIPAGVP 99
++ + L +D+VI P
Sbjct: 66 EEHEKMVSVLKQVDIVISALPFP 88
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
HET: MNB; 2.30A {Shigella flexneri 2A}
Length = 236
Score = 32.8 bits (75), Expect = 0.11
Identities = 15/87 (17%), Positives = 27/87 (31%), Gaps = 7/87 (8%)
Query: 22 KVAILGAAGGIGQPL--AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ 79
V ILGA G I + + + K ++ P ++ ++ L
Sbjct: 25 NVLILGAGGQIARHVINQLADKQTIKQTLF-----ARQPAKIHKPYPTNSQIIMGDVLNH 79
Query: 80 PQLENALTGMDLVIIPAGVPRKPGMTR 106
L+ A+ G D+V
Sbjct: 80 AALKQAMQGQDIVYANLTGEDLDIQAN 106
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
veillo parvula; HET: MLZ; 1.25A {Veillonella parvula
dsm 2008} PDB: 3r14_A*
Length = 221
Score = 32.7 bits (74), Expect = 0.13
Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 20/86 (23%)
Query: 22 KVAILGAAGGIGQPLAMLMKINPLVSV---------LHLYDVVNTPGVTADISHMDTGAV 72
+ ILGAAG I Q L + + + ++++ VT V
Sbjct: 7 YITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVT----------V 56
Query: 73 VRGFLGQPQ-LENALTGMDLVIIPAG 97
+ G P LE A+T ++V + A
Sbjct: 57 IEGSFQNPGXLEQAVTNAEVVFVGAM 82
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short
chain dehydrogenase reductase, flavonoi oxidoreductase;
HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A*
3i6q_A*
Length = 346
Score = 32.7 bits (74), Expect = 0.20
Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 5/83 (6%)
Query: 22 KVAILGAAGGIGQPLAM-LMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG--FLG 78
+V I GA G IGQ +A + + +L + + D GA++
Sbjct: 12 RVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINE 71
Query: 79 QPQLENALTGM--DLVIIPAGVP 99
Q +E L D+V+ G
Sbjct: 72 QEAMEKILKEHEIDIVVSTVGGE 94
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, plant protein; HET: NDP; 1.50A
{Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A*
3c3x_A* 2qw8_A*
Length = 318
Score = 32.2 bits (73), Expect = 0.21
Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 6/81 (7%)
Query: 22 KVAILGAAGGIGQPLAM-LMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG--FLG 78
K+ I G G IG + +K+ V + T + GA++
Sbjct: 13 KILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLD---EFQSLGAIIVKGELDE 69
Query: 79 QPQLENALTGMDLVIIPAGVP 99
+L + +D+VI P
Sbjct: 70 HEKLVELMKKVDVVISALAFP 90
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase;
1.60A {Medicago sativa}
Length = 307
Score = 32.2 bits (73), Expect = 0.25
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 22 KVAILGAAGGIGQPL--AMLMKINPLVSVLHLYDVVNTPGVTADI--SHMDTGA-VVRGF 76
K+ ILG G IG+ + A + NP +++ P ++ ++ G ++ G
Sbjct: 4 KILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGD 63
Query: 77 LGQPQ-LENALTGMDLVIIPAG 97
+ + L A+ +D+VI AG
Sbjct: 64 INDHETLVKAIKQVDIVICAAG 85
>1xq6_A Unknown protein; structural genomics, protein structure initiative,
CESG, AT5G02240, NADP, center for eukaryotic structural
genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Length = 253
Score = 32.1 bits (73), Expect = 0.25
Identities = 19/119 (15%), Positives = 32/119 (26%), Gaps = 11/119 (9%)
Query: 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV---VNTPGVTADISHMDTGAVVRGFLG 78
V + GA+G GQ + L + V + I V G +
Sbjct: 6 TVLVTGASGRTGQIV-----YKKLKEGSDKFVAKGLVRSAQGKEKIG--GEADVFIGDIT 58
Query: 79 QPQ-LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 136
+ A G+D ++I K D + + + N I
Sbjct: 59 DADSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQI 117
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 31.6 bits (72), Expect = 0.32
Identities = 18/106 (16%), Positives = 39/106 (36%), Gaps = 19/106 (17%)
Query: 22 KVAILGAAGGIGQPLA-MLMKINPLVSVLHLYDVVNTPG----VTADISHMDTGAVVRGF 76
++ + GAAG +G+ + L + ++ + L + V D++ D AV
Sbjct: 5 RLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPAGPNEECVQCDLA--DANAV---- 58
Query: 77 LGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCE 122
+ G D ++ G+ + + + N + L E
Sbjct: 59 ------NAMVAGCDGIVHLGGISVE--KPFEQILQGNIIGLYNLYE 96
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.46
Identities = 6/27 (22%), Positives = 15/27 (55%), Gaps = 4/27 (14%)
Query: 341 QQEMKRCQEKFHRLSFFSLESPSPVIS 367
+Q +K+ Q L ++ +S +P ++
Sbjct: 19 KQALKKLQA---SLKLYADDS-APALA 41
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription;
HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB:
2fmu_A
Length = 242
Score = 30.9 bits (70), Expect = 0.54
Identities = 25/116 (21%), Positives = 41/116 (35%), Gaps = 4/116 (3%)
Query: 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 81
V ILGA+G G+ L + L S + L + + ++ + V F
Sbjct: 20 SVFILGASGETGRVLLKEILEQGLFSKVTL--IGRRKLTFDEEAYKNVNQEVVDFEKLDD 77
Query: 82 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 137
+A G D+ G R + ++ V E +AK NL+S
Sbjct: 78 YASAFQGHDVGFCCLGTTRG-KAGAEGFVRVDRDYVLKSAE-LAKAGGCKHFNLLS 131
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 31.0 bits (70), Expect = 0.63
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 22 KVAILGAAGGIGQPLAM-LMKINPLVSVLHLYDVVNTPGVTADI--SHMDTGA-VVRGFL 77
++ ++GA G IG+ +A + + +L ++ A + S +GA +V G +
Sbjct: 6 RILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSI 65
Query: 78 GQPQ-LENALTGMDLVI 93
L A+ +D+VI
Sbjct: 66 DDHASLVEAVKNVDVVI 82
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation,
flavin reductase, diaphorase, green HAEM binding
protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2
PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Length = 206
Score = 29.2 bits (66), Expect = 1.8
Identities = 22/90 (24%), Positives = 31/90 (34%), Gaps = 10/90 (11%)
Query: 22 KVAILGAAGGIGQPLA-MLMKINPLVSVLHLYDVVNTPGVTADISHMDTGA-VVRGFLGQ 79
K+AI GA G G ++ V+VL V A VV G + Q
Sbjct: 5 KIAIFGATGQTGLTTLAQAVQAGYEVTVL-----VRDSSRLPSEG--PRPAHVVVGDVLQ 57
Query: 80 PQ-LENALTGMDLVIIPAGVPRKPGMTRDD 108
++ + G D VI+ G T
Sbjct: 58 AADVDKTVAGQDAVIVLLGTRNDLSPTTVM 87
>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura
genomics, PSI, protein structure initiative; 1.50A
{Pseudomonas aeruginosa} SCOP: c.2.1.2
Length = 215
Score = 28.8 bits (65), Expect = 2.3
Identities = 18/116 (15%), Positives = 32/116 (27%), Gaps = 9/116 (7%)
Query: 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 81
+V + GA G G+ L + P V P A H V
Sbjct: 7 RVLLAGATGLTGEHLLDRILSEP------TLAKVIAPARKALAEHPRLDNPVGPL--AEL 58
Query: 82 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 137
L +D G K + + ++ + + + A ++S
Sbjct: 59 LPQLDGSIDTAFCCLGTTIKEAGSEEAFRAVDFDLPLAVGK-RALEMGARHYLVVS 113
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
2.10A {Burkholderia thailandensis}
Length = 272
Score = 29.1 bits (66), Expect = 2.4
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 8/75 (10%)
Query: 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQP- 80
K+AI GA+G +G+ L + P +++ D +P + D GA + G
Sbjct: 9 KIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDA-----GAFLGKQTGVAL 63
Query: 81 --QLENALTGMDLVI 93
+E D +I
Sbjct: 64 TDDIERVCAEADYLI 78
>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A
{Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A*
1dru_A* 1drv_A* 1drw_A*
Length = 273
Score = 28.7 bits (65), Expect = 2.7
Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 81
+VAI GA G +G+ L V + + + + +D + GA G Q
Sbjct: 7 RVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGEL-AGAGKTGVTVQSS 65
Query: 82 LENALTGMDLVI 93
L+ D+ I
Sbjct: 66 LDAVKDDFDVFI 77
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode
biostructures, niaid, amino-acid biosynthesis,
cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Length = 288
Score = 28.8 bits (65), Expect = 2.9
Identities = 13/72 (18%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Query: 22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 81
++ ++GA G +G+ L ++ V + + + V D S + G+ G
Sbjct: 23 RLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASIL-IGSDFLGVRITDD 81
Query: 82 LENALTGMDLVI 93
E+A + + ++
Sbjct: 82 PESAFSNTEGIL 93
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding
domain, monofunctional, oxidoreductase; 2.80A
{Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB:
1ee9_A*
Length = 320
Score = 28.9 bits (65), Expect = 3.0
Identities = 15/112 (13%), Positives = 35/112 (31%), Gaps = 5/112 (4%)
Query: 19 AGFKVAILGAAGGIGQPLAMLM-KINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL 77
G K ++ + +G+PLA L+ V + + + + + G
Sbjct: 176 YGKKCIVINRSEIVGRPLAALLANDGATVYSVDV-NNIQKFTRGESLKLNKHHVEDLGEY 234
Query: 78 GQPQLENALTGMDLVIIPAGVPR---KPGMTRDDLFNINAGIVRTLCEGIAK 126
+ L+ D+VI ++ IN + + + +
Sbjct: 235 SEDLLKKCSLDSDVVITGVPSENYKFPTEYIKEGAVCINFACTKNFSDDVKE 286
>2vun_A Enamidase; nicotinate degradation, binuclear metal center,
amidohydrolases, stereospecificity, hydrolase; 1.89A
{Eubacterium barkeri}
Length = 386
Score = 28.8 bits (64), Expect = 3.3
Identities = 13/51 (25%), Positives = 15/51 (29%), Gaps = 2/51 (3%)
Query: 59 GVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRD 107
GVT IS + G L L+ PAGV G
Sbjct: 92 GVTTMISAGSPHFPGRPKDAAGTKALAITLSKSYYNARPAGVKVHGGAVIL 142
>2liu_A CURA; holo state, transferase; NMR {Lyngbya majuscula} PDB: 2liw_A*
Length = 99
Score = 26.9 bits (60), Expect = 4.2
Identities = 4/23 (17%), Positives = 11/23 (47%), Gaps = 2/23 (8%)
Query: 167 MLDVVRANTFVAEVLGLDPRDVD 189
+ V++ +AE L + ++
Sbjct: 22 IKQVLKQQ--LAEALYTEESEIA 42
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold,
structural genomics; HET: NAP F42; 1.65A {Archaeoglobus
fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Length = 212
Score = 27.9 bits (61), Expect = 4.3
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 22 KVAILGAAGGIGQPLAMLM 40
+VA+LG G +G+ LA+ +
Sbjct: 2 RVALLGGTGNLGKGLALRL 20
>3la4_A Urease; JACK bean, hydrolase, ME binding, nickel; HET: CME KCX;
2.05A {Canavalia ensiformis}
Length = 840
Score = 28.3 bits (63), Expect = 4.4
Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 3/91 (3%)
Query: 70 GAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP 129
G V+R +GQ +D VI A + G+ + D+ + I G
Sbjct: 318 GKVIRDGMGQSCGHPPAISLDTVITNAVIIDYTGIIKADIGIKDGLIASIGKAGNPDIMN 377
Query: 130 NATVNLISNPVNSTVPIAAE-VFKKAGTYDP 159
N+I +T IA E + AG D
Sbjct: 378 GVFSNMIIGA--NTEVIAGEGLIVTAGAIDC 406
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Length = 286
Score = 28.1 bits (62), Expect = 5.2
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 22 KVAILGAAGGIGQPLAMLMK 41
VAILGA G +G + +
Sbjct: 13 TVAILGAGGKMGARITRKIH 32
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A
{Pseudomonas aeruginosa}
Length = 342
Score = 28.0 bits (63), Expect = 5.5
Identities = 20/118 (16%), Positives = 33/118 (27%), Gaps = 20/118 (16%)
Query: 13 RAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHL----YDV---VNTPGVTADIS 65
A K A+LGA G +G + +D+ ++
Sbjct: 6 PLSRPGAHVKYAVLGATGLLGHHA-----------ARAIRAAGHDLVLIHRPSSQIQRLA 54
Query: 66 HMDTGAVVRGFLGQPQ-LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCE 122
+++ + LE AL G+D VI AG + G
Sbjct: 55 YLE-PECRVAEMLDHAGLERALRGLDGVIFSAGYYPSRPRRWQEEVASALGQTNPFYA 111
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse,
oxidoreductase; 2.10A {Chromohalobacter salexigens}
Length = 267
Score = 27.3 bits (61), Expect = 7.2
Identities = 23/109 (21%), Positives = 40/109 (36%), Gaps = 25/109 (22%)
Query: 22 KVAILGAAGGIGQPLA-MLMKINPLVSVLHLYDVVNTPG-------VTADISHMDTGAVV 73
++ + GAAGG+G + L + V + D+V+ V D++ D AV
Sbjct: 4 RLLVTGAAGGVGSAIRPHLGTLAHEVRLS---DIVDLGAAEAHEEIVACDLA--DAQAV- 57
Query: 74 RGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCE 122
+ + D +I GV + +D+ N L E
Sbjct: 58 ---------HDLVKDCDGIIHLGGVSVE--RPWNDILQANIIGAYNLYE 95
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET:
NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A
2vrc_D
Length = 287
Score = 27.2 bits (61), Expect = 9.1
Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 9/96 (9%)
Query: 23 VAILGAAGGIGQPLA-MLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGF-LGQP 80
+A+ GA G +G + L+K P ++ + V + ++ D G VR QP
Sbjct: 3 IAVTGATGQLGGLVIQHLLKKVPASQIIAI---VRNVEKASTLA--DQGVEVRHGDYNQP 57
Query: 81 Q-LENALTGMD-LVIIPAGVPRKPGMTRDDLFNINA 114
+ L+ A G+ L+ I + + A
Sbjct: 58 ESLQKAFAGVSKLLFISGPHYDNTLLIVQHANVVKA 93
>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET:
NAP; 2.29A {Methanocaldococcus jannaschii}
Length = 354
Score = 27.2 bits (61), Expect = 9.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 14 AKGGAAGFKVAILGAAGGIGQ 34
+KG KV +LGA G +GQ
Sbjct: 2 SKGEKMKIKVGVLGATGSVGQ 22
>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein.,
structural genomics, PSI-2, protein STR initiative; HET:
CIT; 2.70A {Streptococcus mutans}
Length = 519
Score = 27.2 bits (60), Expect = 9.6
Identities = 16/105 (15%), Positives = 29/105 (27%), Gaps = 6/105 (5%)
Query: 163 LGVTMLDVVRANTFVAEVLGLDPR---DVDVPVVGGHAGVTILPLLSQVKPPCSFTQEET 219
LG M+D A+ V L P + +P V + + T+
Sbjct: 190 LGYAMIDAKYADQVVIVTDTLVPYPNTPISIPQTDVDYIVVVDAIGDPEGIAKGATRYTK 249
Query: 220 EYLTNRIQNGGTEVVEAKAGAGS-ATLSMAYAAVKFADACLRGLR 263
I +V+ + + + A R +R
Sbjct: 250 NPKELLIAEYAAKVITSSPYYKEGFSFQTGTGGA--SLAVTRFMR 292
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.408
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,680,306
Number of extensions: 359922
Number of successful extensions: 1262
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1155
Number of HSP's successfully gapped: 105
Length of query: 369
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 274
Effective length of database: 4,049,298
Effective search space: 1109507652
Effective search space used: 1109507652
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.3 bits)