BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017552
(369 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KVN|X Chain X, Crystal Structure Of The Full-Length Autotransporter Esta
From Pseudomonas Aeruginosa
pdb|3KVN|A Chain A, Crystal Structure Of The Full-Length Autotransporter Esta
From Pseudomonas Aeruginosa
Length = 632
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 73/188 (38%), Gaps = 33/188 (17%)
Query: 163 ALVLITLGGNDFVNNYYLVPFSARSRQFSLPDYVVYLISEYRKILARIYELGARRVLVTG 222
AL IT GGNDF+ L A+ L D V L + GAR ++V
Sbjct: 148 ALYYITGGGNDFLQGRILNDVQAQQAAGRLVDSVQAL-----------QQAGARYIVVWL 196
Query: 223 TGPLGCVPAELAQRGVNGECSVELQRAADLFNPQLVQMLNELNSQIGSDVFVAANAFAMH 282
LG PA G + + FN +L L SQ G++V + N +
Sbjct: 197 LPDLGLTPATFG-----GPLQPFASQLSGTFNAELTAQL----SQAGANV-IPLNIPLLL 246
Query: 283 MDFIHDPQAYGFVTSK--IACCGQGPYNGIGLCTIA-----SNLCPNRDLYAFWDPFHPS 335
+ + +P ++G + I C ++G G CT+ + P+ F D HP+
Sbjct: 247 KEGMANPASFGLAADQNLIGTC----FSGNG-CTMNPTYGINGSTPDPSKLLFNDSVHPT 301
Query: 336 EKANRIIV 343
R+I
Sbjct: 302 ITGQRLIA 309
>pdb|1PGN|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|1PGO|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|1PGP|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|1PGQ|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|2PGD|A Chain A, The Structure Of 6-Phosphogluconate Dehydrogenase Refined
At 2 Angstroms Resolution
Length = 482
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 48/114 (42%), Gaps = 11/114 (9%)
Query: 120 LNDTGFQFINIIRISKQIEYFQQYQQRVSALIGAEQTERLVNQ----ALVLITLGGNDFV 175
+ND GF R +++ F + + + ++GA E +V++ +++ + V
Sbjct: 21 MNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAV 80
Query: 176 NNY--YLVPFSARSRQFSLPDYVVYLISEYRKILARIYELGARRVLVTGTGPLG 227
+N+ LVP SEYR + R +L + +L G+G G
Sbjct: 81 DNFIEKLVPLLDIGDIIIDGGN-----SEYRDTMRRCRDLKDKGILFVGSGVSG 129
>pdb|4DJM|A Chain A, Crystal Structure Of The E. Coli Chaperone Drab
pdb|4DJM|B Chain B, Crystal Structure Of The E. Coli Chaperone Drab
pdb|4DJM|C Chain C, Crystal Structure Of The E. Coli Chaperone Drab
pdb|4DJM|D Chain D, Crystal Structure Of The E. Coli Chaperone Drab
pdb|4DJM|E Chain E, Crystal Structure Of The E. Coli Chaperone Drab
pdb|4DJM|F Chain F, Crystal Structure Of The E. Coli Chaperone Drab
pdb|4DJM|G Chain G, Crystal Structure Of The E. Coli Chaperone Drab
pdb|4DJM|H Chain H, Crystal Structure Of The E. Coli Chaperone Drab
Length = 239
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 142 QYQQRVSALIGAEQTERLVNQALVLITLGGNDFVNNYYLVPFSARSRQFSLP 193
++Q+ + L G T +N L +T+GG + Y+ PFS SR++ LP
Sbjct: 164 EWQRAGNRLKGVNPTPFYIN--LSTLTVGGKEVKEREYIAPFS--SREYPLP 211
>pdb|3T8V|A Chain A, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
Length = 895
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 150 LIGAEQTERLVNQALVLITLGGNDFV-NNYYLVPFSARSRQFSLPDYVVYLISEYRKILA 208
LI E + +++Q + +T + FV NN + P + R FS P Y+ +++ +IL
Sbjct: 500 LINPENGKEMISQTTLELTKESDTFVFNNIAVKPIPSLFRGFSAPVYIEDQLTDEERILL 559
Query: 209 RIYELGA 215
Y+ A
Sbjct: 560 LKYDSDA 566
>pdb|3EBI|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
Complexed With The Phosphinate Dipeptide Analog
Length = 890
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 150 LIGAEQTERLVNQALVLITLGGNDFV-NNYYLVPFSARSRQFSLPDYVVYLISEYRKILA 208
LI E + +++Q + +T + FV NN + P + R FS P Y+ +++ +IL
Sbjct: 501 LINPENGKEMISQTTLELTKESDTFVFNNIAVKPIPSLFRGFSAPVYIEDQLTDEERILL 560
Query: 209 RIYELGA 215
Y+ A
Sbjct: 561 LKYDSDA 567
>pdb|3EBG|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
pdb|3EBH|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
Complexed With Bestatin
Length = 889
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 150 LIGAEQTERLVNQALVLITLGGNDFV-NNYYLVPFSARSRQFSLPDYVVYLISEYRKILA 208
LI E + +++Q + +T + FV NN + P + R FS P Y+ +++ +IL
Sbjct: 500 LINPENGKEMISQTTLELTKESDTFVFNNIAVKPIPSLFRGFSAPVYIEDQLTDEERILL 559
Query: 209 RIYELGA 215
Y+ A
Sbjct: 560 LKYDSDA 566
>pdb|3Q43|A Chain A, X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin
Derivative 15
pdb|3Q44|A Chain A, X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin
Derivative 16
Length = 891
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 150 LIGAEQTERLVNQALVLITLGGNDFV-NNYYLVPFSARSRQFSLPDYVVYLISEYRKILA 208
LI E + +++Q + +T + FV NN + P + R FS P Y+ +++ +IL
Sbjct: 501 LINPENGKEMISQTTLELTKESDTFVFNNIAVKPIPSLFRGFSAPVYIEDQLTDEERILL 560
Query: 209 RIYELGA 215
Y+ A
Sbjct: 561 LKYDSDA 567
>pdb|1FMD|3 Chain 3, The Structure And Antigenicity Of A Type C Foot-And-Mouth
Disease Virus
pdb|1QGC|3 Chain 3, Structure Of The Complex Of An Fab Fragment Of A
Neutralizing Antibody With Foot And Mouth Disease Virus
Length = 219
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 72 GRFSNGLNIPDLISEQIGMESTLPYLSPELTGQRLLVGANFASAGIGILN 121
GRF+N L++ + + E+ +PY+S GQRLL + + A + N
Sbjct: 39 GRFTNYLDVAEACPTFLMFEN-VPYVSTRTDGQRLLAKFDVSLAAKHMSN 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,424,362
Number of Sequences: 62578
Number of extensions: 429103
Number of successful extensions: 914
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 911
Number of HSP's gapped (non-prelim): 13
length of query: 369
length of database: 14,973,337
effective HSP length: 100
effective length of query: 269
effective length of database: 8,715,537
effective search space: 2344479453
effective search space used: 2344479453
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)