BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017553
(369 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 283 bits (724), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 153/368 (41%), Positives = 228/368 (61%), Gaps = 26/368 (7%)
Query: 20 KREYRVTNKLQEG-KRPLYAVVFNFIDSRYFN--VFATVGGNRVTVYQCLEGGVIAALQS 76
K ++ N L+E +PL+ V FN+ S+ + VFATVG NRVT+Y+C G I LQS
Sbjct: 3 KYSFKCVNSLKEDHNQPLFGVQFNW-HSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQS 61
Query: 77 YVDEDKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIR 135
YVD D +E+FYT +W + + P L G GIIR+I+ + K +VGHG++INE++
Sbjct: 62 YVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK 121
Query: 136 TQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--RIASC 193
P P+L++S SKD ++RLWN+QT + IF G GHR+EVLS D+ D+ +I SC
Sbjct: 122 FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY---DLLGEKIMSC 178
Query: 194 GMDNTVKIWSM--KEFWTYVEKSFTWTDLPSK----FPTKYVQFPVF-IASVHSNYVDCN 246
GMD+++K+W + K +++S+ + P+K F ++ + FP F +H NYVDC
Sbjct: 179 GMDHSLKLWRINSKRMMNAIKESYDYN--PNKTNRPFISQKIHFPDFSTRDIHRNYVDCV 236
Query: 247 RWLGDFILSKSVDNEIVLWEP-KMKEQ----SPGEGTADILQKYPVPECDIWFIKFSCDF 301
RWLGD ILSKS +N IV W+P KM++ P E IL ++ +CDIW+++FS DF
Sbjct: 237 RWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSTDF 296
Query: 302 HYNAAAIGNREGKIFVWELQSSPP--VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDG 359
A+GN+ GK++VW+L+ P L+H + + IRQT+ S D S +++ C+D
Sbjct: 297 WQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDA 356
Query: 360 AIWRWDAI 367
+IWRWD +
Sbjct: 357 SIWRWDRL 364
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 283 bits (724), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 153/368 (41%), Positives = 228/368 (61%), Gaps = 26/368 (7%)
Query: 20 KREYRVTNKLQEG-KRPLYAVVFNFIDSRYFN--VFATVGGNRVTVYQCLEGGVIAALQS 76
K ++ N L+E +PL+ V FN+ S+ + VFATVG NRVT+Y+C G I LQS
Sbjct: 3 KYSFKCVNSLKEDHNQPLFGVQFNW-HSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQS 61
Query: 77 YVDEDKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIR 135
YVD D +E+FYT +W + + P L G GIIR+I+ + K +VGHG++INE++
Sbjct: 62 YVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK 121
Query: 136 TQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--RIASC 193
P P+L++S SKD ++RLWN+QT + IF G GHR+EVLS D+ D+ +I SC
Sbjct: 122 FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY---DLLGEKIMSC 178
Query: 194 GMDNTVKIWSM--KEFWTYVEKSFTWTDLPSK----FPTKYVQFPVF-IASVHSNYVDCN 246
GMD+++K+W + K +++S+ + P+K F ++ + FP F +H NYVDC
Sbjct: 179 GMDHSLKLWRINSKRMMNAIKESYDYN--PNKTNRPFISQKIHFPDFSTRDIHRNYVDCV 236
Query: 247 RWLGDFILSKSVDNEIVLWEP-KMKEQ----SPGEGTADILQKYPVPECDIWFIKFSCDF 301
RWLGD ILSKS +N IV W+P KM++ P E IL ++ +CDIW+++FS DF
Sbjct: 237 RWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDF 296
Query: 302 HYNAAAIGNREGKIFVWELQSSPP--VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDG 359
A+GN+ GK++VW+L+ P L+H + + IRQT+ S D S +++ C+D
Sbjct: 297 WQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDA 356
Query: 360 AIWRWDAI 367
+IWRWD +
Sbjct: 357 SIWRWDRL 364
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 283 bits (724), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 153/368 (41%), Positives = 228/368 (61%), Gaps = 26/368 (7%)
Query: 20 KREYRVTNKLQEG-KRPLYAVVFNFIDSRYFN--VFATVGGNRVTVYQCLEGGVIAALQS 76
K ++ N L+E +PL+ V FN+ S+ + VFATVG NRVT+Y+C G I LQS
Sbjct: 4 KYSFKCVNSLKEDHNQPLFGVQFNW-HSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQS 62
Query: 77 YVDEDKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIR 135
YVD D +E+FYT +W + + P L G GIIR+I+ + K +VGHG++INE++
Sbjct: 63 YVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK 122
Query: 136 TQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--RIASC 193
P P+L++S SKD ++RLWN+QT + IF G GHR+EVLS D+ D+ +I SC
Sbjct: 123 FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY---DLLGEKIMSC 179
Query: 194 GMDNTVKIWSM--KEFWTYVEKSFTWTDLPSK----FPTKYVQFPVF-IASVHSNYVDCN 246
GMD+++K+W + K +++S+ + P+K F ++ + FP F +H NYVDC
Sbjct: 180 GMDHSLKLWRINSKRMMNAIKESYDYN--PNKTNRPFISQKIHFPDFSTRDIHRNYVDCV 237
Query: 247 RWLGDFILSKSVDNEIVLWEP-KMKEQ----SPGEGTADILQKYPVPECDIWFIKFSCDF 301
RWLGD ILSKS +N IV W+P KM++ P E IL ++ +CDIW+++FS DF
Sbjct: 238 RWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDF 297
Query: 302 HYNAAAIGNREGKIFVWELQSSPP--VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDG 359
A+GN+ GK++VW+L+ P L+H + + IRQT+ S D S +++ C+D
Sbjct: 298 WQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDA 357
Query: 360 AIWRWDAI 367
+IWRWD +
Sbjct: 358 SIWRWDRL 365
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 283 bits (723), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 153/368 (41%), Positives = 228/368 (61%), Gaps = 26/368 (7%)
Query: 20 KREYRVTNKLQEG-KRPLYAVVFNFIDSRYFN--VFATVGGNRVTVYQCLEGGVIAALQS 76
K ++ N L+E +PL+ V FN+ S+ + VFATVG NRVT+Y+C G I LQS
Sbjct: 40 KYSFKCVNSLKEDHNQPLFGVQFNW-HSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQS 98
Query: 77 YVDEDKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIR 135
YVD D +E+FYT +W + + P L G GIIR+I+ + K +VGHG++INE++
Sbjct: 99 YVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK 158
Query: 136 TQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--RIASC 193
P P+L++S SKD ++RLWN+QT + IF G GHR+EVLS D+ D+ +I SC
Sbjct: 159 FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY---DLLGEKIMSC 215
Query: 194 GMDNTVKIWSM--KEFWTYVEKSFTWTDLPSK----FPTKYVQFPVF-IASVHSNYVDCN 246
GMD+++K+W + K +++S+ + P+K F ++ + FP F +H NYVDC
Sbjct: 216 GMDHSLKLWRINSKRMMNAIKESYDYN--PNKTNRPFISQKIHFPDFSTRDIHRNYVDCV 273
Query: 247 RWLGDFILSKSVDNEIVLWEP-KMKEQ----SPGEGTADILQKYPVPECDIWFIKFSCDF 301
RWLGD ILSKS +N IV W+P KM++ P E IL ++ +CDIW+++FS DF
Sbjct: 274 RWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDF 333
Query: 302 HYNAAAIGNREGKIFVWELQSSPP--VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDG 359
A+GN+ GK++VW+L+ P L+H + + IRQT+ S D S +++ C+D
Sbjct: 334 WQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDA 393
Query: 360 AIWRWDAI 367
+IWRWD +
Sbjct: 394 SIWRWDRL 401
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 282 bits (722), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 152/365 (41%), Positives = 227/365 (62%), Gaps = 26/365 (7%)
Query: 23 YRVTNKLQEG-KRPLYAVVFNFIDSRYFN--VFATVGGNRVTVYQCLEGGVIAALQSYVD 79
++ N L+E +PL+ V FN+ S+ + VFATVG NRVT+Y+C G I LQSYVD
Sbjct: 2 FKCVNSLKEDHNQPLFGVQFNW-HSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVD 60
Query: 80 EDKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQP 138
D +E+FYT +W + + P L G GIIR+I+ + K +VGHG++INE++ P
Sbjct: 61 ADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHP 120
Query: 139 LKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--RIASCGMD 196
P+L++S SKD ++RLWN+QT + IF G GHR+EVLS D+ D+ +I SCGMD
Sbjct: 121 RDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY---DLLGEKIMSCGMD 177
Query: 197 NTVKIWSM--KEFWTYVEKSFTWTDLPSK----FPTKYVQFPVF-IASVHSNYVDCNRWL 249
+++K+W + K +++S+ + P+K F ++ + FP F +H NYVDC RWL
Sbjct: 178 HSLKLWRINSKRMMNAIKESYDYN--PNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL 235
Query: 250 GDFILSKSVDNEIVLWEP-KMKEQ----SPGEGTADILQKYPVPECDIWFIKFSCDFHYN 304
GD ILSKS +N IV W+P KM++ P E IL ++ +CDIW+++FS DF
Sbjct: 236 GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQK 295
Query: 305 AAAIGNREGKIFVWELQSSPP--VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIW 362
A+GN+ GK++VW+L+ P L+H + + IRQT+ S D S +++ C+D +IW
Sbjct: 296 MLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIW 355
Query: 363 RWDAI 367
RWD +
Sbjct: 356 RWDRL 360
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 122/302 (40%), Gaps = 57/302 (18%)
Query: 52 FATVGGNRVT-VYQCLEGGVIAAL--QSYVDEDKEE---------SFYTVSWACNVDGIP 99
+ G N+ T VY+ +G ++A L S ++D E Y S + DG
Sbjct: 78 YLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG-K 136
Query: 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 159
FL G + +IR+ D+ N K+ GH I + P LV S S D +VR+W+++
Sbjct: 137 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLV-SGSGDRTVRIWDLR 195
Query: 160 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTD 219
TG C L + G V +V P D IA+ +D V++W E F
Sbjct: 196 TGQCSLTLSIEDG----VTTVAVSPGDGKYIAAGSLDRAVRVWDS-------ETGFLVER 244
Query: 220 LPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLW-----EPKMKEQSP 274
L S+ + + V + G ++S S+D + LW K ++P
Sbjct: 245 LDSENESGTGHKDSVYSVVFTRD-------GQSVVSGSLDRSVKLWNLQNANNKSDSKTP 297
Query: 275 GEGTADILQKYPVPECDIWFIKFSCDFHYNAAAI--------GNREGKIFVWELQSSPPV 326
GT C++ +I DF + A G+++ + W+ +S P+
Sbjct: 298 NSGT-----------CEVTYIGHK-DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL 345
Query: 327 LI 328
L+
Sbjct: 346 LM 347
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 123 SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSV 180
+++GH D + + T ++S SKD V W+ ++G +L+ GHRN V+SV
Sbjct: 305 TYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQ---GHRNSVISV 358
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 109/249 (43%), Gaps = 42/249 (16%)
Query: 142 SLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKI 201
+ VSAS D S+RLWN+Q G C F GH +VLSV F P D +I S G DN +++
Sbjct: 80 NFAVSASWDHSLRLWNLQNGQCQYKFL---GHTKDVLSVAFSP-DNRQIVSGGRDNALRV 135
Query: 202 WSMKEFWTYVEKSFTWTDLPS--KFPTKYVQFPVFIAS---------------------V 238
W++K + TD S +F + + PV ++
Sbjct: 136 WNVKGECMHTLSRGAHTDWVSCVRF-SPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKG 194
Query: 239 HSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFS 298
H+NYV D L S D + V ++ + + GE +++ P+ + I FS
Sbjct: 195 HTNYVTSVTVSPDGSLCASSDKDGV---ARLWDLTKGEALSEMAAGAPINQ-----ICFS 246
Query: 299 CDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQT---AMSYDGSTILSC 355
+ ++ AA E I +++L++ ++ H SK + + A S DGST+ S
Sbjct: 247 PNRYWMCAAT---EKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSG 303
Query: 356 CEDGAIWRW 364
D I W
Sbjct: 304 YTDNVIRVW 312
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 64/140 (45%), Gaps = 18/140 (12%)
Query: 64 QCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGI-----------PFLVAGGINGIIRV 112
Q + GG AL+ + K E +T+S + D + P +V+GG + +++V
Sbjct: 123 QIVSGGRDNALRVW--NVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKV 180
Query: 113 IDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGG 172
D++ +L GH + + + P SL S+ KD RLW++ G + A AG
Sbjct: 181 WDLATGRLVTDLKGHTNYVTSVTVSP-DGSLCASSDKDGVARLWDLTKGEALSEMA-AGA 238
Query: 173 HRNEVLSVDFHPSDIYRIAS 192
N++ F P+ + A+
Sbjct: 239 PINQIC---FSPNRYWMCAA 255
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 109/250 (43%), Gaps = 37/250 (14%)
Query: 89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 148
V+W+ + + LV+ + +++ DVS+ K K+ GH + + P + +L+VS S
Sbjct: 74 VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 129
Query: 149 KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 208
DESVR+W+V+TG+C+ H + V +V F+ D I S D +IW
Sbjct: 130 FDESVRIWDVKTGMCLKTLP---AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-- 183
Query: 209 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPK 268
K+ D P P +V+F G +IL+ ++DN++ LW+
Sbjct: 184 GQCLKTLIDDDNP---PVSFVKFSPN---------------GKYILAATLDNDLKLWDYS 225
Query: 269 MKEQSPGEGTADILQKYPV-----PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 323
K + T +KY + W + S D N I N + K V +LQ
Sbjct: 226 -KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED---NMVYIWNLQTKEIVQKLQGH 281
Query: 324 PPVLIARLSH 333
V+I+ H
Sbjct: 282 TDVVISTACH 291
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 108/250 (43%), Gaps = 37/250 (14%)
Query: 89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 148
V+W+ + + LV+ + +++ DVS+ K K+ GH + + P + +L+VS S
Sbjct: 74 VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 129
Query: 149 KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 208
DESVR+W+V+TG+C+ H + V +V F+ D I S D +IW
Sbjct: 130 FDESVRIWDVKTGMCLKTLP---AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-- 183
Query: 209 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPK 268
K+ D P P +V+F G +IL+ ++DN + LW+
Sbjct: 184 GQCLKTLIDDDNP---PVSFVKFSPN---------------GKYILAATLDNTLKLWDYS 225
Query: 269 MKEQSPGEGTADILQKYPV-----PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 323
K + T +KY + W + S D N I N + K V +LQ
Sbjct: 226 -KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED---NMVYIWNLQTKEIVQKLQGH 281
Query: 324 PPVLIARLSH 333
V+I+ H
Sbjct: 282 TDVVISTACH 291
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 116/270 (42%), Gaps = 38/270 (14%)
Query: 89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 148
V+W+ + + LV+ + +++ DVS+ K K+ GH + + P + +L+VS S
Sbjct: 74 VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 129
Query: 149 KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 208
DESVR+W+V+TG C+ H + V +V F+ D I S D +IW
Sbjct: 130 FDESVRIWDVKTGKCLKTLP---AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-- 183
Query: 209 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPK 268
K+ D P P +V+F G +IL+ ++DN + LW+
Sbjct: 184 GQCLKTLIDDDNP---PVSFVKFSPN---------------GKYILAATLDNTLKLWDYS 225
Query: 269 MKEQSPGEGTADILQKYPV-----PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 323
K + T +KY + W + S D N I N + K V +LQ
Sbjct: 226 -KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED---NLVYIWNLQTKEIVQKLQGH 281
Query: 324 PPVLIARLSHAQSKSPIRQTAMSYDGSTIL 353
V+I+ H +++ I A+ D + L
Sbjct: 282 TDVVISTACHP-TENIIASAALENDKTIKL 310
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 116/270 (42%), Gaps = 38/270 (14%)
Query: 89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 148
V+W+ + + LV+ + +++ DVS+ K K+ GH + + P + +L+VS S
Sbjct: 74 VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 129
Query: 149 KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 208
DESVR+W+V+TG C+ H + V +V F+ D I S D +IW
Sbjct: 130 FDESVRIWDVKTGKCLKTLP---AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-- 183
Query: 209 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPK 268
K+ D P P +V+F G +IL+ ++DN + LW+
Sbjct: 184 GQCLKTLIDDDNP---PVSFVKFSPN---------------GKYILAATLDNTLKLWDYS 225
Query: 269 MKEQSPGEGTADILQKYPV-----PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 323
K + T +KY + W + S D N I N + K V +LQ
Sbjct: 226 -KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED---NLVYIWNLQTKEIVQKLQGH 281
Query: 324 PPVLIARLSHAQSKSPIRQTAMSYDGSTIL 353
V+I+ H +++ I A+ D + L
Sbjct: 282 TDVVISTACHP-TENIIASAALENDKTIKL 310
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 116/270 (42%), Gaps = 38/270 (14%)
Query: 89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 148
V+W+ + + LV+ + +++ DVS+ K K+ GH + + P + +L+VS S
Sbjct: 74 VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 129
Query: 149 KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 208
DESVR+W+V+TG C+ H + V +V F+ D I S D +IW
Sbjct: 130 FDESVRIWDVKTGKCLKTLP---AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-- 183
Query: 209 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPK 268
K+ D P P +V+F G +IL+ ++DN + LW+
Sbjct: 184 GQCLKTLIDDDNP---PVSFVKFSPN---------------GKYILAATLDNTLKLWDYS 225
Query: 269 MKEQSPGEGTADILQKYPV-----PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 323
K + T +KY + W + S D N I N + K V +LQ
Sbjct: 226 -KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED---NLVYIWNLQTKEIVQKLQGH 281
Query: 324 PPVLIARLSHAQSKSPIRQTAMSYDGSTIL 353
V+I+ H +++ I A+ D + L
Sbjct: 282 TDVVISTACHP-TENIIASAALENDKTIKL 310
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 116/270 (42%), Gaps = 38/270 (14%)
Query: 89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 148
V+W+ + + LV+ + +++ DVS+ K K+ GH + + P + +L+VS S
Sbjct: 72 VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 127
Query: 149 KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 208
DESVR+W+V+TG C+ H + V +V F+ D I S D +IW
Sbjct: 128 FDESVRIWDVKTGKCLKTLP---AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-- 181
Query: 209 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPK 268
K+ D P P +V+F G +IL+ ++DN + LW+
Sbjct: 182 GQCLKTLIDDDNP---PVSFVKFSPN---------------GKYILAATLDNTLKLWD-Y 222
Query: 269 MKEQSPGEGTADILQKYPV-----PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 323
K + T +KY + W + S D N I N + K V +LQ
Sbjct: 223 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED---NLVYIWNLQTKEIVQKLQGH 279
Query: 324 PPVLIARLSHAQSKSPIRQTAMSYDGSTIL 353
V+I+ H +++ I A+ D + L
Sbjct: 280 TDVVISTACHP-TENIIASAALENDKTIKL 308
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 116/270 (42%), Gaps = 38/270 (14%)
Query: 89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 148
V+W+ + + LV+ + +++ DVS+ K K+ GH + + P + +L+VS S
Sbjct: 67 VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 122
Query: 149 KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 208
DESVR+W+V+TG C+ H + V +V F+ D I S D +IW
Sbjct: 123 FDESVRIWDVKTGKCLKTLP---AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-- 176
Query: 209 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPK 268
K+ D P P +V+F G +IL+ ++DN + LW+
Sbjct: 177 GQCLKTLIDDDNP---PVSFVKFSPN---------------GKYILAATLDNTLKLWD-Y 217
Query: 269 MKEQSPGEGTADILQKYPV-----PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 323
K + T +KY + W + S D N I N + K V +LQ
Sbjct: 218 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED---NLVYIWNLQTKEIVQKLQGH 274
Query: 324 PPVLIARLSHAQSKSPIRQTAMSYDGSTIL 353
V+I+ H +++ I A+ D + L
Sbjct: 275 TDVVISTACHP-TENIIASAALENDKTIKL 303
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 116/270 (42%), Gaps = 38/270 (14%)
Query: 89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 148
V+W+ + + LV+ + +++ DVS+ K K+ GH + + P + +L+VS S
Sbjct: 70 VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 125
Query: 149 KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 208
DESVR+W+V+TG C+ H + V +V F+ D I S D +IW
Sbjct: 126 FDESVRIWDVKTGKCLKTLP---AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-- 179
Query: 209 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPK 268
K+ D P P +V+F G +IL+ ++DN + LW+
Sbjct: 180 GQCLKTLIDDDNP---PVSFVKFSPN---------------GKYILAATLDNTLKLWD-Y 220
Query: 269 MKEQSPGEGTADILQKYPV-----PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 323
K + T +KY + W + S D N I N + K V +LQ
Sbjct: 221 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED---NLVYIWNLQTKEIVQKLQGH 277
Query: 324 PPVLIARLSHAQSKSPIRQTAMSYDGSTIL 353
V+I+ H +++ I A+ D + L
Sbjct: 278 TDVVISTACHP-TENIIASAALENDKTIKL 306
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 107/250 (42%), Gaps = 37/250 (14%)
Query: 89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 148
V+W+ + + LV+ + +++ DVS+ K K+ GH + + P + +L+VS S
Sbjct: 88 VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 143
Query: 149 KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 208
DESVR+W+V+TG C+ H + V +V F+ D I S D +IW
Sbjct: 144 FDESVRIWDVKTGKCLKTLP---AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-- 197
Query: 209 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPK 268
K+ D P P +V+F G +IL+ ++DN + LW+
Sbjct: 198 GQCLKTLIDDDNP---PVSFVKFSPN---------------GKYILAATLDNTLKLWD-Y 238
Query: 269 MKEQSPGEGTADILQKYPV-----PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 323
K + T +KY + W + S D N I N + K V +LQ
Sbjct: 239 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED---NLVYIWNLQTKEIVQKLQGH 295
Query: 324 PPVLIARLSH 333
V+I+ H
Sbjct: 296 TDVVISTACH 305
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 82/178 (46%), Gaps = 28/178 (15%)
Query: 89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 148
V+W+ + + LV+ + +++ DVS+ K K+ GH + + P + +L+VS S
Sbjct: 95 VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 150
Query: 149 KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 208
DESVR+W+V+TG C+ H + V +V F+ D I S D +IW
Sbjct: 151 FDESVRIWDVKTGKCLKTLP---AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-- 204
Query: 209 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWE 266
K+ D P P +V+F G +IL+ ++DN + LW+
Sbjct: 205 GQCLKTLIDDDNP---PVSFVKFSPN---------------GKYILAATLDNTLKLWD 244
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 107/250 (42%), Gaps = 37/250 (14%)
Query: 89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 148
V+W+ + + LV+ + +++ DVS+ K K+ GH + + P + +L+VS S
Sbjct: 77 VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 132
Query: 149 KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 208
DESVR+W+V+TG C+ H + V +V F+ D I S D +IW
Sbjct: 133 FDESVRIWDVKTGKCLKTLP---AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-- 186
Query: 209 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPK 268
K+ D P P +V+F G +IL+ ++DN + LW+
Sbjct: 187 GQCLKTLIDDDNP---PVSFVKFSPN---------------GKYILAATLDNTLKLWD-Y 227
Query: 269 MKEQSPGEGTADILQKYPV-----PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 323
K + T +KY + W + S D N I N + K V +LQ
Sbjct: 228 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED---NLVYIWNLQTKEIVQKLQGH 284
Query: 324 PPVLIARLSH 333
V+I+ H
Sbjct: 285 TDVVISTACH 294
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 107/250 (42%), Gaps = 37/250 (14%)
Query: 89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 148
V+W+ + + LV+ + +++ DVS+ K K+ GH + + P + +L+VS S
Sbjct: 77 VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 132
Query: 149 KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 208
DESVR+W+V+TG C+ H + V +V F+ D I S D +IW
Sbjct: 133 FDESVRIWDVKTGKCLKTLP---AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-- 186
Query: 209 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPK 268
K+ D P P +V+F G +IL+ ++DN + LW+
Sbjct: 187 GQCLKTLIDDDNP---PVSFVKFSPN---------------GKYILAATLDNTLKLWD-Y 227
Query: 269 MKEQSPGEGTADILQKYPV-----PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 323
K + T +KY + W + S D N I N + K V +LQ
Sbjct: 228 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED---NLVYIWNLQTKEIVQKLQGH 284
Query: 324 PPVLIARLSH 333
V+I+ H
Sbjct: 285 TDVVISTACH 294
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 116/270 (42%), Gaps = 38/270 (14%)
Query: 89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 148
V+W+ + + LV+ + +++ DVS+ K K+ GH + + P + +L+VS S
Sbjct: 71 VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 126
Query: 149 KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 208
DESVR+W+V+TG C+ H + V +V F+ D I S D +IW
Sbjct: 127 FDESVRIWDVKTGKCLKTLP---AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-- 180
Query: 209 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPK 268
K+ D P P +V+F G +IL+ ++DN + LW+
Sbjct: 181 GQCLKTLIDDDNP---PVSFVKFSPN---------------GKYILAATLDNTLKLWD-Y 221
Query: 269 MKEQSPGEGTADILQKYPV-----PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 323
K + T +KY + W + S D N I N + K V +LQ
Sbjct: 222 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED---NLVYIWNLQTKEIVQKLQGH 278
Query: 324 PPVLIARLSHAQSKSPIRQTAMSYDGSTIL 353
V+I+ H +++ I A+ D + L
Sbjct: 279 TDVVISTACHP-TENIIASAALENDKTIKL 307
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 116/270 (42%), Gaps = 38/270 (14%)
Query: 89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 148
V+W+ + + LV+ + +++ DVS+ K K+ GH + + P + +L+VS S
Sbjct: 77 VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 132
Query: 149 KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 208
DESVR+W+V+TG C+ H + V +V F+ D I S D +IW
Sbjct: 133 FDESVRIWDVKTGKCLKTLP---AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-- 186
Query: 209 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPK 268
K+ D P P +V+F G +IL+ ++DN + LW+
Sbjct: 187 GQCLKTLIDDDNP---PVSFVKFSPN---------------GKYILAATLDNTLKLWD-Y 227
Query: 269 MKEQSPGEGTADILQKYPV-----PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 323
K + T +KY + W + S D N I N + K V +LQ
Sbjct: 228 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED---NLVYIWNLQTKEIVQKLQGH 284
Query: 324 PPVLIARLSHAQSKSPIRQTAMSYDGSTIL 353
V+I+ H +++ I A+ D + L
Sbjct: 285 TDVVISTACHP-TENIIASAALENDKTIKL 313
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 82/178 (46%), Gaps = 28/178 (15%)
Query: 89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 148
V+W+ + + LV+ + +++ DVS+ K K+ GH + + P + +L+VS S
Sbjct: 93 VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 148
Query: 149 KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 208
DESVR+W+V+TG C+ H + V +V F+ D I S D +IW
Sbjct: 149 FDESVRIWDVKTGKCLKTLP---AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-- 202
Query: 209 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWE 266
K+ D P P +V+F G +IL+ ++DN + LW+
Sbjct: 203 GQCLKTLIDDDNP---PVSFVKFSPN---------------GKYILAATLDNTLKLWD 242
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 107/250 (42%), Gaps = 37/250 (14%)
Query: 89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 148
V+W+ + + LV+ + +++ DVS+ K K+ GH + + P + +L+VS S
Sbjct: 76 VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 131
Query: 149 KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 208
DESVR+W+V+TG C+ H + V +V F+ D I S D +IW
Sbjct: 132 FDESVRIWDVKTGKCLKTLP---AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-- 185
Query: 209 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPK 268
K+ D P P +V+F G +IL+ ++DN + LW+
Sbjct: 186 GQCLKTLIDDDNP---PVSFVKFSPN---------------GKYILAATLDNTLKLWD-Y 226
Query: 269 MKEQSPGEGTADILQKYPV-----PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 323
K + T +KY + W + S D N I N + K V +LQ
Sbjct: 227 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED---NLVYIWNLQTKEIVQKLQGH 283
Query: 324 PPVLIARLSH 333
V+I+ H
Sbjct: 284 TDVVISTACH 293
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 116/270 (42%), Gaps = 38/270 (14%)
Query: 89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 148
V+W+ + + LV+ + +++ DVS+ K K+ GH + + P + +L+VS S
Sbjct: 71 VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 126
Query: 149 KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 208
DESVR+W+V+TG C+ H + V +V F+ D I S D +IW
Sbjct: 127 FDESVRIWDVKTGKCLKTLP---AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-- 180
Query: 209 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPK 268
K+ D P P +V+F G +IL+ ++DN + LW+
Sbjct: 181 GQCLKTLIDDDNP---PVSFVKFSPN---------------GKYILAATLDNTLKLWD-Y 221
Query: 269 MKEQSPGEGTADILQKYPV-----PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 323
K + T +KY + W + S D N I N + K V +LQ
Sbjct: 222 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED---NLVYIWNLQTKEIVQKLQGH 278
Query: 324 PPVLIARLSHAQSKSPIRQTAMSYDGSTIL 353
V+I+ H +++ I A+ D + L
Sbjct: 279 TDVVISTACHP-TENIIASAALENDKTIKL 307
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/268 (26%), Positives = 108/268 (40%), Gaps = 42/268 (15%)
Query: 117 NEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNE 176
N +L ++ GH S+N + +P + SAS D++V+LWN + G + GH +
Sbjct: 251 NGQLLQTLTGHSSSVNGVAFRP-DGQTIASASDDKTVKLWN-RNGQLLQTLT---GHSSS 305
Query: 177 VLSVDFHPSDIYRIASCGMDNTVKIWSM--KEFWTYV-EKSFTW--------TDLPSKFP 225
V V F P D IAS D TVK+W+ + T S W + S
Sbjct: 306 VWGVAFSP-DGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASD 364
Query: 226 TKYVQF------PVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEG 277
K V+ + + HS+ V + G I S S D + LW +
Sbjct: 365 DKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ------- 417
Query: 278 TADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSK 337
+LQ +W + FS D A+A ++ K++ Q +L H+
Sbjct: 418 ---LLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQ----LLQTLTGHS--- 467
Query: 338 SPIRQTAMSYDGSTILSCCEDGAIWRWD 365
S +R A S DG TI S +D + W+
Sbjct: 468 SSVRGVAFSPDGQTIASASDDKTVKLWN 495
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 98/251 (39%), Gaps = 49/251 (19%)
Query: 117 NEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNE 176
N +L ++ GH S+ + P + SAS D++V+LWN + G + GH +
Sbjct: 169 NGQLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWN-RNGQLLQTLT---GHSSS 223
Query: 177 VLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA 236
V V F P D IAS D TVK+W+ + +Q
Sbjct: 224 VRGVAFSP-DGQTIASASDDKTVKLWNRNG--------------------QLLQ----TL 258
Query: 237 SVHSNYVD--CNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWF 294
+ HS+ V+ R G I S S D + LW + +LQ +W
Sbjct: 259 TGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ----------LLQTLTGHSSSVWG 308
Query: 295 IKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILS 354
+ FS D A+A ++ K++ Q L H+ S + A S DG TI S
Sbjct: 309 VAFSPDGQTIASASDDKTVKLWNRNGQH----LQTLTGHS---SSVWGVAFSPDGQTIAS 361
Query: 355 CCEDGAIWRWD 365
+D + W+
Sbjct: 362 ASDDKTVKLWN 372
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 117 NEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNE 176
N +L ++ GH S+ + P + SAS D++V+LWN + G + GH +
Sbjct: 497 NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWN-RNGQLLQTLT---GHSSS 551
Query: 177 VLSVDFHPSDIYRIASCGMDNTVKIW 202
V V F P D IAS D TVK+W
Sbjct: 552 VWGVAFSP-DGQTIASASSDKTVKLW 576
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 117 NEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNE 176
N +L ++ GH S+ + P + SAS D++V+LWN + G + GH +
Sbjct: 87 NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWN-RNGQLLQTLT---GHSSS 141
Query: 177 VLSVDFHPSDIYRIASCGMDNTVKIW 202
V V F P D IAS D TVK+W
Sbjct: 142 VWGVAFSP-DGQTIASASDDKTVKLW 166
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 95/245 (38%), Gaps = 49/245 (20%)
Query: 144 VVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWS 203
+ SAS D++V+LWN + G + GH + V V F P D IAS D TVK+W+
Sbjct: 31 IASASDDKTVKLWN-RNGQLLQTLT---GHSSSVWGVAFSP-DGQTIASASDDKTVKLWN 85
Query: 204 M--KEFWTYVEKSFT---------WTDLPSKFPTKYVQF------PVFIASVHSNYVDCN 246
+ T S + + S K V+ + + HS+ V
Sbjct: 86 RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSV--- 142
Query: 247 RWL------GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCD 300
W G I S S D + LW + +LQ +W + FS D
Sbjct: 143 -WGVAFSPDGQTIASASDDKTVKLWNRNGQ----------LLQTLTGHSSSVWGVAFSPD 191
Query: 301 FHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGA 360
A+A ++ K++ Q +L H+ S +R A S DG TI S +D
Sbjct: 192 GQTIASASDDKTVKLWNRNGQ----LLQTLTGHS---SSVRGVAFSPDGQTIASASDDKT 244
Query: 361 IWRWD 365
+ W+
Sbjct: 245 VKLWN 249
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 46/116 (39%), Gaps = 17/116 (14%)
Query: 250 GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG 309
G I S S D + LW + +LQ +W + FS D A+A
Sbjct: 28 GQTIASASDDKTVKLWNRNGQ----------LLQTLTGHSSSVWGVAFSPDGQTIASASD 77
Query: 310 NREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 365
++ K++ Q +L H+ S +R A S DG TI S +D + W+
Sbjct: 78 DKTVKLWNRNGQ----LLQTLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWN 126
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 117 NEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN 157
N +L ++ GH S+ + P + SAS D++V+LWN
Sbjct: 538 NGQLLQTLTGHSSSVWGVAFSP-DGQTIASASSDKTVKLWN 577
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 84/176 (47%), Gaps = 13/176 (7%)
Query: 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 159
+++ G + +IRV D N+K GH + ++ ++VS S D +VR+W+++
Sbjct: 134 YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA--HGGILVSGSTDRTVRVWDIK 191
Query: 160 TGICILIFAGAGGHRNEVLSVDF-HPSDIYRIASCGMDNTVKIWSM-KEFWTYVEKSFTW 217
G C +F GH + V +D +I I + DNT+ +W + KE + V
Sbjct: 192 KGCCTHVFE---GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE--SSVPDHGEE 246
Query: 218 TDLPSKFPTKYVQFPVFIASV--HSNYVDCNRWLGDFILSKSVDNEIVLWE-PKMK 270
D P F T + P F+ + H V G+ ++S S DN +++W+ +MK
Sbjct: 247 HDYPLVFHTPE-ENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMK 301
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 134 IRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASC 193
+RT ++VVS S D ++ +W+V C+ I + GH + + S + + R S
Sbjct: 273 VRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILS---GHTDRIYST-IYDHERKRCISA 328
Query: 194 GMDNTVKIWSMKE 206
MD T++IW ++
Sbjct: 329 SMDTTIRIWDLEN 341
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 80/191 (41%), Gaps = 19/191 (9%)
Query: 85 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSI-NEIRTQPLKPSL 143
S TVS N+ +V+G + + V DV+ K GH D I + I K
Sbjct: 272 SVRTVSGHGNI-----VVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKR-- 324
Query: 144 VVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWS 203
+SAS D ++R+W+++ G + G + L SD + + S D +++ W
Sbjct: 325 CISASMDTTIRIWDLENGELMYTLQG-----HTALVGLLRLSDKF-LVSAAADGSIRGWD 378
Query: 204 MKEFWTYVEK-SFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEI 262
+ Y K S+ T+L S T YV + ++ + + N G + + + +
Sbjct: 379 AND---YSRKFSYHHTNL-SAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDAD 434
Query: 263 VLWEPKMKEQS 273
+W K ++
Sbjct: 435 QIWSVNFKGKT 445
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 2/106 (1%)
Query: 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 159
F ++G +G +R+ D++ + FVGH + + L +VSAS+D +++LWN
Sbjct: 444 FALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFS-LDNRQIVSASRDRTIKLWNTL 502
Query: 160 TGICILIFAGAGGHRNEVLSVDFHPSDIY-RIASCGMDNTVKIWSM 204
I G GHR+ V V F P+ + I S D TVK+W++
Sbjct: 503 GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNL 548
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 52/108 (48%), Gaps = 9/108 (8%)
Query: 99 PFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 158
P +V+ + ++V ++SN KL + GH ++ + P SL S KD V LW++
Sbjct: 532 PTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDL 590
Query: 159 QTGICILIFAGAGGHRNEVL-SVDFHPSDIYRIASCGMDNTVKIWSMK 205
G + N V+ ++ F P+ + A+ ++ +KIW ++
Sbjct: 591 AEGKKLYSL-----EANSVIHALCFSPNRYWLCAAT--EHGIKIWDLE 631
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 45/131 (34%), Gaps = 51/131 (38%)
Query: 120 LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESV-------------------------- 153
L + H D + I T ++VSAS+D+S+
Sbjct: 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFV 433
Query: 154 ---------------------RLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIAS 192
RLW++ G+ F GH +VLSV F D +I S
Sbjct: 434 EDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFV---GHTKDVLSVAFS-LDNRQIVS 489
Query: 193 CGMDNTVKIWS 203
D T+K+W+
Sbjct: 490 ASRDRTIKLWN 500
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 159
+++ G + IRV + + + F H D I I P KP V+S S D +V+LWN +
Sbjct: 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWE 127
Query: 160 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206
+ GH + V+ V F+P D AS +D TVK+WS+ +
Sbjct: 128 NNWALE--QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ 172
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 125 VGHGDSINEIRTQPL--KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDF 182
G +N + PL KP ++ +AS D ++++W+ QT C+ A GH + V F
Sbjct: 181 TGQERGVNYVDYYPLPDKPYMI-TASDDLTIKIWDYQTKSCV---ATLEGHMSNVSFAVF 236
Query: 183 HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSF 215
HP+ + I S D T+KIW+ + VEK+
Sbjct: 237 HPT-LPIIISGSEDGTLKIWNSSTY--KVEKTL 266
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 159
+++ G + IRV + + + F H D I I P KP V+S S D +V+LWN +
Sbjct: 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWE 127
Query: 160 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206
+ GH + V+ V F+P D AS +D TVK+WS+ +
Sbjct: 128 NNWALE--QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ 172
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 125 VGHGDSINEIRTQPL--KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDF 182
G +N + PL KP ++ +AS D ++++W+ QT C+ A GH + V F
Sbjct: 181 TGQERGVNYVDYYPLPDKPYMI-TASDDLTIKIWDYQTKSCV---ATLEGHMSNVSFAVF 236
Query: 183 HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSF 215
HP+ + I S D T+KIW+ + VEK+
Sbjct: 237 HPT-LPIIISGSEDGTLKIWNSSTY--KVEKTL 266
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 12/171 (7%)
Query: 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 159
+++ G + IRV D N+K GH + ++ ++VS S D +VR+W+++
Sbjct: 134 YVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYA--HGGILVSGSTDRTVRVWDIK 191
Query: 160 TGICILIFAGAGGHRNEVLSVDF-HPSDIYRIASCGMDNTVKIWSM-KEFWTYVEKSFTW 217
G C +F GH + V +D +I I + DNT+ +W + KE + V
Sbjct: 192 KGCCTHVFE---GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE--SSVPDHGEE 246
Query: 218 TDLPSKFPTKYVQFPVFIASV--HSNYVDCNRWLGDFILSKSVDNEIVLWE 266
D P F T + P F+ + H V G+ ++S S DN +++W+
Sbjct: 247 HDYPLVFHTPE-ENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWD 296
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 134 IRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASC 193
+RT ++VVS S D ++ +W+V C+ I + GH + + S + + R S
Sbjct: 273 VRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILS---GHTDRIYST-IYDHERKRCISA 328
Query: 194 GMDNTVKIWSMKE 206
D T++IW ++
Sbjct: 329 SXDTTIRIWDLEN 341
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 79/191 (41%), Gaps = 19/191 (9%)
Query: 85 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSI-NEIRTQPLKPSL 143
S TVS N+ +V+G + + V DV+ K GH D I + I K
Sbjct: 272 SVRTVSGHGNI-----VVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKR-- 324
Query: 144 VVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWS 203
+SAS D ++R+W+++ G G + L SD + + S D +++ W
Sbjct: 325 CISASXDTTIRIWDLENGELXYTLQG-----HTALVGLLRLSDKF-LVSAAADGSIRGWD 378
Query: 204 MKEFWTYVEK-SFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEI 262
+ Y K S+ T+L S T YV + ++ + + N G + + + +
Sbjct: 379 AND---YSRKFSYHHTNL-SAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDAD 434
Query: 263 VLWEPKMKEQS 273
+W K ++
Sbjct: 435 QIWSVNFKGKT 445
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 159
+++ G + IRV + + + F H D I I P KP V+S S D +V+LWN +
Sbjct: 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWE 127
Query: 160 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206
+ GH + V+ V F+P D AS +D TVK+WS+ +
Sbjct: 128 NNWALE--QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ 172
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 125 VGHGDSINEIRTQPL--KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDF 182
G +N + PL KP ++ +AS D ++++W+ QT C+ A GH + V F
Sbjct: 181 TGQERGVNYVDYYPLPDKPYMI-TASDDLTIKIWDYQTKSCV---ATLEGHMSNVSFAVF 236
Query: 183 HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSF 215
HP+ + I S D T+KIW+ + VEK+
Sbjct: 237 HPT-LPIIISGSEDGTLKIWNSSTY--KVEKTL 266
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 68/133 (51%), Gaps = 13/133 (9%)
Query: 79 DEDKEESFYTVS------WACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSIN 132
D + E +T+ ++ DGI +V+G ++ IRV DV + GH +
Sbjct: 265 DPETETCLHTLQGHTNRVYSLQFDGI-HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS 323
Query: 133 EIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIAS 192
+ LK +++VS + D +V++W+++TG C+ G H++ V + F+ + + I S
Sbjct: 324 GM---ELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVITS 378
Query: 193 CGMDNTVKIWSMK 205
D TVK+W +K
Sbjct: 379 SD-DGTVKLWDLK 390
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 78/171 (45%), Gaps = 29/171 (16%)
Query: 101 LVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 160
+V+G + +++V D E + GH + + ++ + VVS S D S+R+W+V+T
Sbjct: 252 VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIH---VVSGSLDTSIRVWDVET 308
Query: 161 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDL 220
G CI G ++ L+ D + S D+TVKIW D+
Sbjct: 309 GNCIHTLTG-----HQSLTSGMELKDNI-LVSGNADSTVKIW----------------DI 346
Query: 221 PSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKE 271
+ + +Q P + H + V C ++ +F+++ S D + LW+ K E
Sbjct: 347 KTGQCLQTLQGP----NKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGE 393
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/266 (17%), Positives = 106/266 (39%), Gaps = 48/266 (18%)
Query: 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 159
+++G + ++V + + + GH ++ R L VVS S+D ++R+W+++
Sbjct: 171 IIISGSTDRTLKVWNAETGECIHTLYGHTSTV---RCMHLHEKRVVSGSRDATLRVWDIE 227
Query: 160 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTD 219
TG C+ + GH V V + D R+ S D VK+W +
Sbjct: 228 TGQCLHVLM---GHVAAVRCVQY---DGRRVVSGAYDFMVKVWDPE-------------- 267
Query: 220 LPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTA 279
+ + H+N V ++ G ++S S+D I +W+ + T
Sbjct: 268 ---------TETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVE---------TG 309
Query: 280 DILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSP 339
+ + + + + N GN + + +W++++ + + +K
Sbjct: 310 NCIHTLTGHQS----LTSGMELKDNILVSGNADSTVKIWDIKTGQCL---QTLQGPNKHQ 362
Query: 340 IRQTAMSYDGSTILSCCEDGAIWRWD 365
T + ++ + +++ +DG + WD
Sbjct: 363 SAVTCLQFNKNFVITSSDDGTVKLWD 388
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 53/105 (50%), Gaps = 9/105 (8%)
Query: 101 LVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 160
+V+G + ++V K ++ VGH + + ++ ++++S S D ++++WN +T
Sbjct: 132 IVSGSDDNTLKVWSAVTGKCLRTLVGH---TGGVWSSQMRDNIIISGSTDRTLKVWNAET 188
Query: 161 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMK 205
G CI GH + V + H R+ S D T+++W ++
Sbjct: 189 GECIHTLY---GHTSTVRCMHLHEK---RVVSGSRDATLRVWDIE 227
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 159
LV+G + +++ D+ + ++ G + + + V+++S D +V+LW+++
Sbjct: 331 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK 390
Query: 160 TG-----ICILIFAGAGG 172
TG + L G+GG
Sbjct: 391 TGEFIRNLVTLESGGSGG 408
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 5/103 (4%)
Query: 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 159
L + + I++ D + ++ GH +++ + P +VSAS+D+++++W VQ
Sbjct: 164 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQ 222
Query: 160 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIW 202
TG C+ F GHR V V + D IASC D TV++W
Sbjct: 223 TGYCVKTFT---GHREWVRMVRPN-QDGTLIASCSNDQTVRVW 261
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 109/281 (38%), Gaps = 53/281 (18%)
Query: 101 LVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 160
+V+ + I+V D ++ GH DS+ +I + L+ S S D +++LW+ Q
Sbjct: 123 MVSASEDATIKVWDYETGDFERTLKGHTDSVQDI-SFDHSGKLLASCSADMTIKLWDFQG 181
Query: 161 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDL 220
CI GH + V SV P+ + I S D T+K+W ++ Y K+FT
Sbjct: 182 FECIRTMH---GHDHNVSSVSIMPNGDH-IVSASRDKTIKMWEVQT--GYCVKTFT---- 231
Query: 221 PSKFPTKYVQFPVFIASVHSNYVDCNR--WLGDFILSKSVDNEIVLWEPKMKEQSPGEGT 278
H +V R G I S S D + +W K E
Sbjct: 232 -----------------GHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK-----ECK 269
Query: 279 ADILQKYPVPECDIWFIKFSCDFHYNAAA--------------IGNREGKIFVWELQSSP 324
A++ + V EC W + S A G+R+ I +W++ S+
Sbjct: 270 AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV-STG 328
Query: 325 PVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 365
L+ + H + +R G ILSC +D + WD
Sbjct: 329 MCLMTLVGH---DNWVRGVLFHSGGKFILSCADDKTLRVWD 366
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 99 PFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 158
PFL++G + I++ DVS + VGH + + + ++S + D+++R+W+
Sbjct: 309 PFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDY 367
Query: 159 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMK 205
+ C+ H + V S+DFH + Y + + +D TVK+W +
Sbjct: 368 KNKRCMKTL---NAHEHFVTSLDFHKTAPY-VVTGSVDQTVKVWECR 410
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 123 SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDF 182
+ GH + + P+ S++VSAS+D ++++W+ +TG GH + V + F
Sbjct: 103 ALSGHRSPVTRVIFHPV-FSVMVSASEDATIKVWDYETGDFERTLK---GHTDSVQDISF 158
Query: 183 HPSDIYRIASCGMDNTVKIWSMKEF 207
S +ASC D T+K+W + F
Sbjct: 159 DHSGKL-LASCSADMTIKLWDFQGF 182
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Query: 101 LVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 160
++ G + IRV + + + F H D I I P KP V+S S D +V+LWN +
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWEN 128
Query: 161 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206
+ GH + V+ V F+P D AS +D TVK+WS+ +
Sbjct: 129 NWALE--QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ 172
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 125 VGHGDSINEIRTQPL--KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDF 182
G +N + PL KP ++ +AS D ++++W+ QT C+ A GH + V F
Sbjct: 181 TGQERGVNYVDYYPLPDKPYMI-TASDDLTIKIWDYQTKSCV---ATLEGHMSNVSFAVF 236
Query: 183 HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSF 215
HP+ + I S D T+KIW+ + VEK+
Sbjct: 237 HPT-LPIIISGSEDGTLKIWNSSTY--KVEKTL 266
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 66/128 (51%), Gaps = 9/128 (7%)
Query: 89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 148
VS C + ++ G +G I++I++ N ++ S VGH ++ I+ +L+ S+S
Sbjct: 971 VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLI-SSS 1029
Query: 149 KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 208
+D +++WN QTG + + A H+ V DF R+ S D TVK+W++
Sbjct: 1030 EDSVIQVWNWQTGDYVFLQA----HQETV--KDFRLLQDSRLLSWSFDGTVKVWNV--IT 1081
Query: 209 TYVEKSFT 216
+E+ FT
Sbjct: 1082 GRIERDFT 1089
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 76/174 (43%), Gaps = 14/174 (8%)
Query: 34 RPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWA 92
RP V++ S+ A+ G ++ + V++ G + ++++ DE + A
Sbjct: 619 RPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDE-------VLCCA 671
Query: 93 CNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIR-TQPLKPSLVVSASKDE 151
+ D ++ + +++ D + KL ++ H + +N T L+ + S D
Sbjct: 672 FSSDD-SYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDF 730
Query: 152 SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMK 205
++LW++ C G H N V F P D +ASC D T+++W ++
Sbjct: 731 FLKLWDLNQKECRNTMFG---HTNSVNHCRFSPDDEL-LASCSADGTLRLWDVR 780
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 159
L G + +++ D++ ++ + GH +S+N R P L+ S S D ++RLW+V+
Sbjct: 722 LLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWDVR 780
Query: 160 TG 161
+
Sbjct: 781 SA 782
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 144 VVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIW- 202
+ S D++++++ +TG +L H +EVL F D Y IA+C D VKIW
Sbjct: 637 IASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFSSDDSY-IATCSADKKVKIWD 692
Query: 203 --SMKEFWTYVEKS 214
+ K TY E S
Sbjct: 693 SATGKLVHTYDEHS 706
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 302 HYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAI 361
H A G+ +G I + EL ++ V + + H K +R + DG T++S ED I
Sbjct: 979 HLEYVAFGDEDGAIKIIELPNNR-VFSSGVGH---KKAVRHIQFTADGKTLISSSEDSVI 1034
Query: 362 WRWD 365
W+
Sbjct: 1035 QVWN 1038
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 66/128 (51%), Gaps = 9/128 (7%)
Query: 89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 148
VS C + ++ G +G I++I++ N ++ S VGH ++ I+ +L+ S+S
Sbjct: 964 VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLI-SSS 1022
Query: 149 KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 208
+D +++WN QTG + + A H+ V DF R+ S D TVK+W++
Sbjct: 1023 EDSVIQVWNWQTGDYVFLQA----HQETV--KDFRLLQDSRLLSWSFDGTVKVWNV--IT 1074
Query: 209 TYVEKSFT 216
+E+ FT
Sbjct: 1075 GRIERDFT 1082
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 76/174 (43%), Gaps = 14/174 (8%)
Query: 34 RPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWA 92
RP V++ S+ A+ G ++ + V++ G + ++++ DE + A
Sbjct: 612 RPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDE-------VLCCA 664
Query: 93 CNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIR-TQPLKPSLVVSASKDE 151
+ D ++ + +++ D + KL ++ H + +N T L+ + S D
Sbjct: 665 FSSDD-SYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDF 723
Query: 152 SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMK 205
++LW++ C G H N V F P D +ASC D T+++W ++
Sbjct: 724 FLKLWDLNQKECRNTMFG---HTNSVNHCRFSPDDEL-LASCSADGTLRLWDVR 773
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 159
L G + +++ D++ ++ + GH +S+N R P L+ S S D ++RLW+V+
Sbjct: 715 LLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWDVR 773
Query: 160 TG 161
+
Sbjct: 774 SA 775
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 144 VVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIW- 202
+ S D++++++ +TG +L H +EVL F D Y IA+C D VKIW
Sbjct: 630 IASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFSSDDSY-IATCSADKKVKIWD 685
Query: 203 --SMKEFWTYVEKS 214
+ K TY E S
Sbjct: 686 SATGKLVHTYDEHS 699
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 302 HYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAI 361
H A G+ +G I + EL ++ V + + H K +R + DG T++S ED I
Sbjct: 972 HLEYVAFGDEDGAIKIIELPNNR-VFSSGVGH---KKAVRHIQFTADGKTLISSSEDSVI 1027
Query: 362 WRWD 365
W+
Sbjct: 1028 QVWN 1031
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/272 (22%), Positives = 109/272 (40%), Gaps = 53/272 (19%)
Query: 101 LVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 160
++ G + +RV DV+ ++ + + H +++ +R ++V+ SKD S+ +W++ +
Sbjct: 186 IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLR---FNNGMMVTCSKDRSIAVWDMAS 242
Query: 161 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDL 220
I + GHR V VDF D Y +++ G D T+K+W+
Sbjct: 243 PTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG-DRTIKVWN----------------- 282
Query: 221 PSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKE-QSPGEGTA 279
T +F V + H + C ++ ++S S DN I LW+ + EG
Sbjct: 283 -----TSTCEF-VRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHE 336
Query: 280 DILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL------QSSPPVLIARLSH 333
++++ F G +GKI VW+L ++ L R
Sbjct: 337 ELVR--------------CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV 382
Query: 334 AQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 365
S R + +D I+S D I WD
Sbjct: 383 EHSGRVFR---LQFDEFQIVSSSHDDTILIWD 411
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 9/105 (8%)
Query: 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 159
++V+ + I+V + S + ++ GH I ++ + LVVS S D ++RLW+++
Sbjct: 268 YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQ---YRDRLVVSGSSDNTIRLWDIE 324
Query: 160 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSM 204
G C+ + GH V + F D RI S D +K+W +
Sbjct: 325 CGACLRVLE---GHEELVRCIRF---DNKRIVSGAYDGKIKVWDL 363
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 62/268 (23%), Positives = 107/268 (39%), Gaps = 37/268 (13%)
Query: 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 159
F ++G +G +R+ D++ + FVGH + + +VS S+D++++LWN
Sbjct: 77 FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWNT- 134
Query: 160 TGICILIFAGAGGHRNEVLSVDFHP-SDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWT 218
G+C H V V F P S I SCG D VK+W++
Sbjct: 135 LGVCKYTVQDES-HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN------------ 181
Query: 219 DLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGT 278
K T ++ ++ +V + G S D + +LW+ +
Sbjct: 182 ---CKLKTNHIGHTGYLNTVTVSPD------GSLCASGGKDGQAMLWDLNEGKHLYTLDG 232
Query: 279 ADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKS 338
DI+ W C + I + EGKI V EL+ +I+ S A+
Sbjct: 233 GDIINALCFSPNRYWL----CAATGPSIKIWDLEGKIIVDELKQE---VISTSSKAE--- 282
Query: 339 PIRQTAMSY--DGSTILSCCEDGAIWRW 364
P + T++++ DG T+ + D + W
Sbjct: 283 PPQCTSLAWSADGQTLFAGYTDNLVRVW 310
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 7/107 (6%)
Query: 99 PFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 158
P +V+ G + +++V +++N KL + +GH +N + P SL S KD LW++
Sbjct: 163 PIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDL 221
Query: 159 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMK 205
G + G + + ++ F P+ + A+ G ++KIW ++
Sbjct: 222 NEGKHLYTLDGG----DIINALCFSPNRYWLCAATG--PSIKIWDLE 262
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 49/131 (37%), Gaps = 51/131 (38%)
Query: 120 LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESV-------------------------- 153
L + GH + +I T P P +++SAS+D+++
Sbjct: 7 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV 66
Query: 154 ---------------------RLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIAS 192
RLW++ TG F GH +VLSV F SD +I S
Sbjct: 67 SDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV---GHTKDVLSVAF-SSDNRQIVS 122
Query: 193 CGMDNTVKIWS 203
D T+K+W+
Sbjct: 123 GSRDKTIKLWN 133
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 62/268 (23%), Positives = 107/268 (39%), Gaps = 37/268 (13%)
Query: 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 159
F ++G +G +R+ D++ + FVGH + + +VS S+D++++LWN
Sbjct: 100 FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWNT- 157
Query: 160 TGICILIFAGAGGHRNEVLSVDFHP-SDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWT 218
G+C H V V F P S I SCG D VK+W++
Sbjct: 158 LGVCKYTVQDES-HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN------------ 204
Query: 219 DLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGT 278
K T ++ ++ +V + G S D + +LW+ +
Sbjct: 205 ---CKLKTNHIGHTGYLNTVTVSPD------GSLCASGGKDGQAMLWDLNEGKHLYTLDG 255
Query: 279 ADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKS 338
DI+ W C + I + EGKI V EL+ +I+ S A+
Sbjct: 256 GDIINALCFSPNRYWL----CAATGPSIKIWDLEGKIIVDELKQE---VISTSSKAE--- 305
Query: 339 PIRQTAMSY--DGSTILSCCEDGAIWRW 364
P + T++++ DG T+ + D + W
Sbjct: 306 PPQCTSLAWSADGQTLFAGYTDNLVRVW 333
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 7/107 (6%)
Query: 99 PFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 158
P +V+ G + +++V +++N KL + +GH +N + P SL S KD LW++
Sbjct: 186 PIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDL 244
Query: 159 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMK 205
G + G + + ++ F P+ + A+ G ++KIW ++
Sbjct: 245 NEGKHLYTLDGG----DIINALCFSPNRYWLCAATG--PSIKIWDLE 285
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 49/131 (37%), Gaps = 51/131 (38%)
Query: 120 LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESV-------------------------- 153
L + GH + +I T P P +++SAS+D+++
Sbjct: 30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV 89
Query: 154 ---------------------RLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIAS 192
RLW++ TG F GH +VLSV F SD +I S
Sbjct: 90 SDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV---GHTKDVLSVAF-SSDNRQIVS 145
Query: 193 CGMDNTVKIWS 203
D T+K+W+
Sbjct: 146 GSRDKTIKLWN 156
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 80/193 (41%), Gaps = 17/193 (8%)
Query: 15 LTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAAL 74
+TP+K+R ++ + + N +D NV A V V+ G V A
Sbjct: 70 VTPAKRRFNTTPERVLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALA 129
Query: 75 QSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEI 134
++ +ES Y S + DG FL G NG++ + DV ++ ++ GH + +
Sbjct: 130 ET------DESTYVASVKWSHDG-SFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCL 182
Query: 135 --RTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIAS 192
L A VR+ N Q G GH +EV + + SD ++AS
Sbjct: 183 SWNRHVLSSGSRSGAIHHHDVRIANHQIGTL-------QGHSSEVCGLAWR-SDGLQLAS 234
Query: 193 CGMDNTVKIWSMK 205
G DN V+IW +
Sbjct: 235 GGNDNVVQIWDAR 247
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 60/113 (53%), Gaps = 12/113 (10%)
Query: 99 PFLVAGGINGIIRVIDVSNEKL-------HKSFVGHGDSINEIRTQPLKPSLVVSASKDE 151
P L++G + + + + E+ HK+ GH ++++ + +S+S D+
Sbjct: 40 PVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQ-ENCFAISSSWDK 98
Query: 152 SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSM 204
++RLW+++TG F GH++EV SV F P D +I S G + +K+W++
Sbjct: 99 TLRLWDLRTGTTYKRFV---GHQSEVYSVAFSP-DNRQILSAGAEREIKLWNI 147
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 108/270 (40%), Gaps = 54/270 (20%)
Query: 110 IRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAG 169
+R+ DV+ + ++ FVGH + + K S+++S S+D+++++W ++ G C+
Sbjct: 89 LRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIK-GQCLATLL- 145
Query: 170 AGGHRNEVLSVDFHPS-----DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKF 224
GH + V V P+ D I S G D VK W++ +F + + F
Sbjct: 146 --GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF-----------QIEADF 192
Query: 225 PTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQK 284
AS G I S D EI+LW K+
Sbjct: 193 IGHNSNINTLTASPD----------GTLIASAGKDGEIMLWNLAAKK-----------AM 231
Query: 285 YPVPECD-IWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARL-----SHAQSKS 338
Y + D ++ + FS + ++ AAA I V+ L P L+ L ++++
Sbjct: 232 YTLSAQDEVFSLAFSPNRYWLAAATAT---GIKVFSLD--PQYLVDDLRPEFAGYSKAAE 286
Query: 339 P-IRQTAMSYDGSTILSCCEDGAIWRWDAI 367
P A S DG T+ + D I W +
Sbjct: 287 PHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 122 KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVD 181
+SF GH + + T + +SAS D+++RLW+V TG F GH+++V+SVD
Sbjct: 59 RSFKGHSHIVQDC-TLTADGAYALSASWDKTLRLWDVATGETYQRFV---GHKSDVMSVD 114
Query: 182 FHPSDIYRIASCGMDNTVKIWSMK 205
I S D T+K+W++K
Sbjct: 115 IDKK-ASMIISGSRDKTIKVWTIK 137
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 54/104 (51%), Gaps = 7/104 (6%)
Query: 101 LVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 160
+++ G + +++ +++ ++ F+GH +IN + P +L+ SA KD + LWN+
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAA 227
Query: 161 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSM 204
+ + ++EV S+ F P+ + A+ +K++S+
Sbjct: 228 KKAMYTLSA----QDEVFSLAFSPNRYWLAAATA--TGIKVFSL 265
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 106/270 (39%), Gaps = 54/270 (20%)
Query: 110 IRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAG 169
+R+ DV+ + ++ FVGH + + K S+++S S+D+++++W ++ G C+
Sbjct: 89 LRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIK-GQCLATLL- 145
Query: 170 AGGHRNEVLSVDFHPS-----DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKF 224
GH + V V P+ D I S G D VK W++ +F + + F
Sbjct: 146 --GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF-----------QIEADF 192
Query: 225 PTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQK 284
AS G I S D EI+LW K+
Sbjct: 193 IGHNSNINTLTASPD----------GTLIASAGKDGEIMLWNLAAKK-----------AM 231
Query: 285 YPVPECD-IWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLS------HAQSK 337
Y + D ++ + FS + ++ AAA I V+ L P L+ L A ++
Sbjct: 232 YTLSAQDEVFSLAFSPNRYWLAAATAT---GIKVFSLD--PQYLVDDLRPEFAGYSAAAE 286
Query: 338 SPIRQTAMSYDGSTILSCCEDGAIWRWDAI 367
A S DG T+ + D I W +
Sbjct: 287 PHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 122 KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVD 181
+SF GH + + T + +SAS D+++RLW+V TG F GH+++V+SVD
Sbjct: 59 RSFKGHSHIVQDC-TLTADGAYALSASWDKTLRLWDVATGETYQRFV---GHKSDVMSVD 114
Query: 182 FHPSDIYRIASCGMDNTVKIWSMK 205
I S D T+K+W++K
Sbjct: 115 IDKK-ASMIISGSRDKTIKVWTIK 137
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 54/104 (51%), Gaps = 7/104 (6%)
Query: 101 LVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 160
+++ G + +++ +++ ++ F+GH +IN + P +L+ SA KD + LWN+
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAA 227
Query: 161 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSM 204
+ + ++EV S+ F P+ + A+ +K++S+
Sbjct: 228 KKAMYTLSA----QDEVFSLAFSPNRYWLAAATA--TGIKVFSL 265
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 108/270 (40%), Gaps = 54/270 (20%)
Query: 110 IRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAG 169
+R+ DV+ + ++ FVGH + + K S+++S S+D+++++W ++ G C+
Sbjct: 89 LRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIK-GQCLATLL- 145
Query: 170 AGGHRNEVLSVDFHPS-----DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKF 224
GH + V V P+ D I S G D VK W++ +F + + F
Sbjct: 146 --GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF-----------QIEADF 192
Query: 225 PTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQK 284
AS G I S D EI+LW K+
Sbjct: 193 IGHNSNINTLTASPD----------GTLIASAGKDGEIMLWNLAAKK-----------AM 231
Query: 285 YPVPECD-IWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARL-----SHAQSKS 338
Y + D ++ + FS + ++ AAA I V+ L P L+ L ++++
Sbjct: 232 YTLSAQDEVFSLAFSPNRYWLAAATAT---GIKVFSLD--PQYLVDDLRPEFAGYSKAAE 286
Query: 339 P-IRQTAMSYDGSTILSCCEDGAIWRWDAI 367
P A S DG T+ + D I W +
Sbjct: 287 PHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 122 KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVD 181
+SF GH + + T + +SAS D+++RLW+V TG F GH+++V+SVD
Sbjct: 59 RSFKGHSHIVQDC-TLTADGAYALSASWDKTLRLWDVATGETYQRFV---GHKSDVMSVD 114
Query: 182 FHPSDIYRIASCGMDNTVKIWSMK 205
I S D T+K+W++K
Sbjct: 115 IDKK-ASMIISGSRDKTIKVWTIK 137
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 54/104 (51%), Gaps = 7/104 (6%)
Query: 101 LVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 160
+++ G + +++ +++ ++ F+GH +IN + P +L+ SA KD + LWN+
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAA 227
Query: 161 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSM 204
+ + ++EV S+ F P+ + A+ +K++S+
Sbjct: 228 KKAMYTLSA----QDEVFSLAFSPNRYWLAAATA--TGIKVFSL 265
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 108/270 (40%), Gaps = 54/270 (20%)
Query: 110 IRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAG 169
+R+ DV+ + ++ FVGH + + K S+++S S+D+++++W ++ G C+
Sbjct: 83 LRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIK-GQCLATLL- 139
Query: 170 AGGHRNEVLSVDFHPS-----DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKF 224
GH + V V P+ D I S G D VK W++ +F + + F
Sbjct: 140 --GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF-----------QIEADF 186
Query: 225 PTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQK 284
AS G I S D EI+LW K+
Sbjct: 187 IGHNSNINTLTASPD----------GTLIASAGKDGEIMLWNLAAKK-----------AM 225
Query: 285 YPVPECD-IWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARL-----SHAQSKS 338
Y + D ++ + FS + ++ AAA I V+ L P L+ L ++++
Sbjct: 226 YTLSAQDEVFSLAFSPNRYWLAAATAT---GIKVFSLD--PQYLVDDLRPEFAGYSKAAE 280
Query: 339 P-IRQTAMSYDGSTILSCCEDGAIWRWDAI 367
P A S DG T+ + D I W +
Sbjct: 281 PHAVSLAWSADGQTLFAGYTDNVIRVWQVM 310
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 122 KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVD 181
+SF GH + + T + +SAS D+++RLW+V TG F GH+++V+SVD
Sbjct: 53 RSFKGHSHIVQDC-TLTADGAYALSASWDKTLRLWDVATGETYQRFV---GHKSDVMSVD 108
Query: 182 FHPSDIYRIASCGMDNTVKIWSMK 205
I S D T+K+W++K
Sbjct: 109 IDKK-ASMIISGSRDKTIKVWTIK 131
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 54/104 (51%), Gaps = 7/104 (6%)
Query: 101 LVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 160
+++ G + +++ +++ ++ F+GH +IN + P +L+ SA KD + LWN+
Sbjct: 163 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAA 221
Query: 161 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSM 204
+ + ++EV S+ F P+ + A+ +K++S+
Sbjct: 222 KKAMYTLSA----QDEVFSLAFSPNRYWLAAATA--TGIKVFSL 259
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 107/267 (40%), Gaps = 54/267 (20%)
Query: 110 IRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAG 169
+R+ DV+ + ++ FVGH + + K S+++S S+D+++++W ++ G C+
Sbjct: 89 LRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIK-GQCLATLL- 145
Query: 170 AGGHRNEVLSVDFHPS-----DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKF 224
GH + V V P+ D I S G D VK W++ +F + + F
Sbjct: 146 --GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF-----------QIEADF 192
Query: 225 PTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQK 284
AS G I S D EI+LW K+
Sbjct: 193 IGHNSNINTLTASPD----------GTLIASAGKDGEIMLWNLAAKK-----------AM 231
Query: 285 YPVPECD-IWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARL-----SHAQSKS 338
Y + D ++ + FS + ++ AAA I V+ L P L+ L ++++
Sbjct: 232 YTLSAQDEVFSLAFSPNRYWLAAATAT---GIKVFSLD--PQYLVDDLRPEFAGYSKAAE 286
Query: 339 P-IRQTAMSYDGSTILSCCEDGAIWRW 364
P A S DG T+ + D I W
Sbjct: 287 PHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 122 KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVD 181
+SF GH + + T + +SAS D+++RLW+V TG F GH+++V+SVD
Sbjct: 59 RSFKGHSHIVQDC-TLTADGAYALSASWDKTLRLWDVATGETYQRFV---GHKSDVMSVD 114
Query: 182 FHPSDIYRIASCGMDNTVKIWSMK 205
I S D T+K+W++K
Sbjct: 115 IDKK-ASMIISGSRDKTIKVWTIK 137
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 54/104 (51%), Gaps = 7/104 (6%)
Query: 101 LVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 160
+++ G + +++ +++ ++ F+GH +IN + P +L+ SA KD + LWN+
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAA 227
Query: 161 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSM 204
+ + ++EV S+ F P+ + A+ +K++S+
Sbjct: 228 KKAMYTLSA----QDEVFSLAFSPNRYWLAAATA--TGIKVFSL 265
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 105/267 (39%), Gaps = 54/267 (20%)
Query: 110 IRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAG 169
+R+ DV+ + ++ FVGH + + K S ++S S+D+++++W ++ G C+
Sbjct: 89 LRLWDVATGETYQRFVGHKSDVXSVDIDK-KASXIISGSRDKTIKVWTIK-GQCLATLL- 145
Query: 170 AGGHRNEVLSVDFHPS-----DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKF 224
GH + V V P+ D I S G D VK W++ +F + + F
Sbjct: 146 --GHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQF-----------QIEADF 192
Query: 225 PTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQK 284
AS G I S D EI LW K+
Sbjct: 193 IGHNSNINTLTASPD----------GTLIASAGKDGEIXLWNLAAKKAX----------- 231
Query: 285 YPVPECD-IWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARL-----SHAQSKS 338
Y + D ++ + FS + ++ AAA I V+ L P L+ L ++++
Sbjct: 232 YTLSAQDEVFSLAFSPNRYWLAAATAT---GIKVFSLD--PQYLVDDLRPEFAGYSKAAE 286
Query: 339 P-IRQTAMSYDGSTILSCCEDGAIWRW 364
P A S DG T+ + D I W
Sbjct: 287 PHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 122 KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVD 181
+SF GH + + T + +SAS D+++RLW+V TG F GH+++V SVD
Sbjct: 59 RSFKGHSHIVQDC-TLTADGAYALSASWDKTLRLWDVATGETYQRFV---GHKSDVXSVD 114
Query: 182 FHPSDIYRIASCGMDNTVKIWSMK 205
I S D T+K+W++K
Sbjct: 115 IDKK-ASXIISGSRDKTIKVWTIK 137
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Query: 101 LVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 160
+++ G + ++ +++ ++ F+GH +IN + P +L+ SA KD + LWN+
Sbjct: 169 IISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIXLWNLAA 227
Query: 161 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSM 204
+ ++EV S+ F P+ + A+ +K++S+
Sbjct: 228 KKAXYTLSA----QDEVFSLAFSPNRYWLAAATATG--IKVFSL 265
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 73/145 (50%), Gaps = 16/145 (11%)
Query: 45 DSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG 104
DS+Y VG +V ++ GV + + Y + + + + +S A + DG +L +G
Sbjct: 133 DSQYLATGTHVG--KVNIF-----GVESGKKEYSLDTRGK--FILSIAYSPDG-KYLASG 182
Query: 105 GINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICI 164
I+GII + D++ KL + GH I + P L+V+AS D +++++VQ
Sbjct: 183 AIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHA--- 238
Query: 165 LIFAGA-GGHRNEVLSVDFHPSDIY 188
AG GH + VL+V F P D +
Sbjct: 239 -NLAGTLSGHASWVLNVAFCPDDTH 262
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 54/116 (46%), Gaps = 17/116 (14%)
Query: 79 DEDKEESFYTVSWACNV-DGIPFLVAGGINGIIRVIDVSNEKL--HKSFVGHGDSINEIR 135
++ +++ ++V+W N + +V G ++ +++V +E+L S GH + +
Sbjct: 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVD 87
Query: 136 TQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIA 191
P + S+S D +RLW+++ G ++ S+D P D + +A
Sbjct: 88 ISHTLP-IAASSSLDAHIRLWDLENG-------------KQIKSIDAGPVDAWTLA 129
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 7/116 (6%)
Query: 89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 148
VS C + ++ G NG I ++++ N ++ +S H ++ I+ + +L+ S+S
Sbjct: 970 VSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLI-SSS 1028
Query: 149 KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSM 204
D +++WN Q CI + GH+ V DF R+ S D TVK+W++
Sbjct: 1029 DDAEIQVWNWQLDKCIFL----RGHQETV--KDFRLLKNSRLLSWSFDGTVKVWNI 1078
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 126 GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS 185
GH +++ + R LK S ++S S D +V++WN+ TG F H+ VLS D
Sbjct: 1048 GHQETVKDFRL--LKNSRLLSWSFDGTVKVWNIITGNKEKDFVC---HQGTVLSCDI-SH 1101
Query: 186 DIYRIASCGMDNTVKIWS 203
D + +S D T KIWS
Sbjct: 1102 DATKFSSTSADKTAKIWS 1119
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 66/183 (36%), Gaps = 38/183 (20%)
Query: 186 DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDC 245
D RIASCG D T++++ + +E H + V C
Sbjct: 632 DGQRIASCGADKTLQVFKAETGEKLLE-----------------------IKAHEDEVLC 668
Query: 246 NRWLGD--FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHY 303
+ D FI + SVD ++ +W T +++ Y + F+ H+
Sbjct: 669 CAFSTDDRFIATCSVDKKVKIWNSM---------TGELVHTYDEHSEQVNCCHFTNSSHH 719
Query: 304 NAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWR 363
A G+ + + +W+L R + + + S D + SC DG +
Sbjct: 720 LLLATGSSDCFLKLWDLNQKE----CRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKL 775
Query: 364 WDA 366
WDA
Sbjct: 776 WDA 778
Score = 34.7 bits (78), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 159
L G + +++ D++ ++ + GH +S+N R P L+ S S D +++LW+
Sbjct: 721 LLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-DDKLLASCSADGTLKLWDAT 779
Query: 160 TG 161
+
Sbjct: 780 SA 781
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 14/120 (11%)
Query: 100 FLVAGGINGIIRVIDVSNEKLH-KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 158
L G + + + D+ N KL SF H D I +++ P +++ S+ D + +W++
Sbjct: 292 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 351
Query: 159 ------------QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206
+ G L+F GGH ++ ++P++ + I S DN +++W M E
Sbjct: 352 SKIGEEQSTEDAEDGPPELLFI-HGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 19/133 (14%)
Query: 87 YTVSWACNVDGIPFLVAGGINGII------------RVIDVSNEKLHKSFVGHGDSINEI 134
Y +SW N++G +L++ + I RVID N F GH + ++
Sbjct: 185 YGLSWNPNLNG--YLLSASDDHTICLWDINATPKEHRVIDAKN-----IFTGHTAVVEDV 237
Query: 135 RTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG 194
L SL S + D+ + +W+ + H EV + F+P + +A+
Sbjct: 238 AWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGS 297
Query: 195 MDNTVKIWSMKEF 207
D TV +W ++
Sbjct: 298 ADKTVALWDLRNL 310
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 14/120 (11%)
Query: 100 FLVAGGINGIIRVIDVSNEKLH-KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 158
L G + + + D+ N KL SF H D I +++ P +++ S+ D + +W++
Sbjct: 288 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDL 347
Query: 159 ------------QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206
+ G L+F GGH ++ ++P++ + I S DN +++W M E
Sbjct: 348 SKIGEEQSPEDAEDGPPELLFI-HGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAE 406
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 53/128 (41%), Gaps = 9/128 (7%)
Query: 87 YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKS-------FVGHGDSINEIRTQPL 139
Y +SW N+ G L++ + I + D+S F GH + ++ L
Sbjct: 181 YGLSWNPNLSG--HLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLL 238
Query: 140 KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTV 199
SL S + D+ + +W+ ++ H EV + F+P + +A+ D TV
Sbjct: 239 HESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTV 298
Query: 200 KIWSMKEF 207
+W ++
Sbjct: 299 ALWDLRNL 306
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 14/120 (11%)
Query: 100 FLVAGGINGIIRVIDVSNEKLH-KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 158
L G + + + D+ N KL SF H D I +++ P +++ S+ D + +W++
Sbjct: 294 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 353
Query: 159 ------------QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206
+ G L+F GGH ++ ++P++ + I S DN +++W M E
Sbjct: 354 SKIGEEQSTEDAEDGPPELLFI-HGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 412
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 19/133 (14%)
Query: 87 YTVSWACNVDGIPFLVAGGINGII------------RVIDVSNEKLHKSFVGHGDSINEI 134
Y +SW N++G +L++ + I RVID N F GH + ++
Sbjct: 187 YGLSWNPNLNG--YLLSASDDHTICLWDINATPKEHRVIDAKN-----IFTGHTAVVEDV 239
Query: 135 RTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG 194
L SL S + D+ + +W+ + H EV + F+P + +A+
Sbjct: 240 AWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGS 299
Query: 195 MDNTVKIWSMKEF 207
D TV +W ++
Sbjct: 300 ADKTVALWDLRNL 312
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 14/120 (11%)
Query: 100 FLVAGGINGIIRVIDVSNEKLH-KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 158
L G + + + D+ N KL SF H D I +++ P +++ S+ D + +W++
Sbjct: 296 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 355
Query: 159 ------------QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206
+ G L+F GGH ++ ++P++ + I S DN +++W M E
Sbjct: 356 SKIGEEQSTEDAEDGPPELLFI-HGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 414
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 19/133 (14%)
Query: 87 YTVSWACNVDGIPFLVAGGINGII------------RVIDVSNEKLHKSFVGHGDSINEI 134
Y +SW N++G +L++ + I RVID N F GH + ++
Sbjct: 189 YGLSWNPNLNG--YLLSASDDHTICLWDINATPKEHRVIDAKN-----IFTGHTAVVEDV 241
Query: 135 RTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG 194
L SL S + D+ + +W+ + H EV + F+P + +A+
Sbjct: 242 AWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGS 301
Query: 195 MDNTVKIWSMKEF 207
D TV +W ++
Sbjct: 302 ADKTVALWDLRNL 314
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 14/120 (11%)
Query: 100 FLVAGGINGIIRVIDVSNEKLH-KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 158
L G + + + D+ N KL +F H D I ++ P +++ S+ D + +W++
Sbjct: 290 ILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Query: 159 ------------QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206
+ G L+F GGH ++ ++P++ + I S DN ++IW M E
Sbjct: 350 SKIGEEQSAEDAEDGPPELLFI-HGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAE 408
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 37/84 (44%)
Query: 124 FVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFH 183
F GH + ++ L SL S + D+ + +W+ ++ H EV + F+
Sbjct: 225 FTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFN 284
Query: 184 PSDIYRIASCGMDNTVKIWSMKEF 207
P + +A+ D TV +W ++
Sbjct: 285 PYSEFILATGSADKTVALWDLRNL 308
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 101 LVAGGINGIIRVIDVS-------NEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESV 153
+ GG++ + ++S N + + GH + + P + + +++ S D++
Sbjct: 123 VACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTC 182
Query: 154 RLWNVQTGICILIFAGA--GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMK 205
LW+V TG I IF GH +VLS+ + + S D TV++W ++
Sbjct: 183 VLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLR 236
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 7/112 (6%)
Query: 95 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVR 154
VD F++ G G I V ++ + +GH I+ + L++SAS D ++R
Sbjct: 215 VDDDKFVIPGP-KGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNK-LLLSASDDGTLR 272
Query: 155 LWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206
+W+ G F G H ++S + D ++ SC MD +V++WS+K+
Sbjct: 273 IWHGGNGNSQNCFYG---HSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQ 319
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 58/110 (52%), Gaps = 8/110 (7%)
Query: 98 IPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKP-SLVVSASKDESVRLW 156
+ L A G +G + DV + +L +SF GHG + + P + + VS D+ +W
Sbjct: 167 MQILTASG-DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVW 225
Query: 157 NVQTGICILIFAGAGGHRNEVLSVDFHPS-DIYRIASCGMDNTVKIWSMK 205
++++G C+ F H ++V SV ++PS D + AS D T +++ ++
Sbjct: 226 DMRSGQCVQAFE---THESDVNSVRYYPSGDAF--ASGSDDATCRLYDLR 270
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 14/120 (11%)
Query: 100 FLVAGGINGIIRVIDVSNEKLH-KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 158
L G + + + D+ N KL +F H D I ++ P +++ S+ D + +W++
Sbjct: 290 ILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Query: 159 ------------QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206
+ G L+F GGH ++ ++P++ + I S DN +IW E
Sbjct: 350 SKIGEEQSAEDAEDGPPELLFI-HGGHTAKISDFSWNPNEPWVICSVSEDNIXQIWQXAE 408
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 37/84 (44%)
Query: 124 FVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFH 183
F GH + ++ L SL S + D+ + +W+ ++ H EV + F+
Sbjct: 225 FTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFN 284
Query: 184 PSDIYRIASCGMDNTVKIWSMKEF 207
P + +A+ D TV +W ++
Sbjct: 285 PYSEFILATGSADKTVALWDLRNL 308
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 140 KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTV 199
K LV ++ V+L ++++G C I G HR E+L+V + P Y +A+ D+ V
Sbjct: 155 KHCLVAVGTRGPKVQLCDLKSGSCSHILQG---HRQEILAVSWSPRYDYILATASADSRV 211
Query: 200 KIWSMK 205
K+W ++
Sbjct: 212 KLWDVR 217
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 10/93 (10%)
Query: 127 HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT----------GICILIFAGAGGHRNE 176
HG IN + +P++ ++S D + L++++ +C + HR
Sbjct: 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101
Query: 177 VLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWT 209
V +V ++P D S D T+K+W T
Sbjct: 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT 134
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 15/117 (12%)
Query: 101 LVAGGING-IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 159
LVA G G +++ D+ + GH I + P ++ +AS D V+LW+V+
Sbjct: 158 LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVR 217
Query: 160 TGI-CILIFAGAGG------------HRNEVLSVDFHPSDIYRIASCGMDNTVKIWS 203
C++ G H +V + F SD + + G DN +++W+
Sbjct: 218 RASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCF-TSDGLHLLTVGTDNRMRLWN 273
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 77/172 (44%), Gaps = 17/172 (9%)
Query: 33 KRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWA 92
++ ++ N++ S F+ + ++C + L+ + +E K +V+WA
Sbjct: 65 RKVAWSPCGNYLASASFDATTCIWKKNQDDFEC-----VTTLEGHENEVK-----SVAWA 114
Query: 93 CNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPS--LVVSASKD 150
+ + L + + V +V E ++ +++ PS L+ SAS D
Sbjct: 115 PSGN---LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYD 171
Query: 151 ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIW 202
++V+L+ + + A GH + V S+ F PS R+ASC D TV+IW
Sbjct: 172 DTVKLYREEEDDWVCC-ATLEGHESTVWSLAFDPSG-QRLASCSDDRTVRIW 221
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 126 GHGDSINEIRTQPLKPSLVVSASKDESVRLW--NVQTGICILIFAGAGGHRNEVLSVDFH 183
GH ++ ++ P + + SAS D + +W N C+ G H NEV SV +
Sbjct: 59 GHQRTVRKVAWSPCG-NYLASASFDATTCIWKKNQDDFECVTTLEG---HENEVKSVAWA 114
Query: 184 PSDIYRIASCGMDNTVKIWSMKE 206
PS +A+C D +V +W + E
Sbjct: 115 PSGNL-LATCSRDKSVWVWEVDE 136
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 142 SLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKI 201
+L+ S D +R+W + I + GH+ V V + P Y +AS D T I
Sbjct: 29 TLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNY-LASASFDATTCI 87
Query: 202 WSMKE 206
W +
Sbjct: 88 WKKNQ 92
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 16/101 (15%)
Query: 112 VIDVSNEKLHKSFVGHGDSINEIRTQPLKP--SLVVSASKDESVRLW----NVQTGICIL 165
+IDV +E HK IR+ +P SL+ + S D +V +W + +
Sbjct: 48 LIDVLDETAHK---------KAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMD 98
Query: 166 IFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206
+ A GH NEV V + +D Y +A+C D +V IW E
Sbjct: 99 LLAIIEGHENEVKGVAW-SNDGYYLATCSRDKSVWIWETDE 138
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 127 HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI--CILIFAGAGGHRNEVLSVDFHP 184
H + + P +L+ S+S D++VR+W C+ + GH V S DF
Sbjct: 152 HSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDDWECVAVL---NGHEGTVWSSDFDK 207
Query: 185 SD-IYRIASCGMDNTVKIW 202
++ ++R+ S D+TV++W
Sbjct: 208 TEGVFRLCSGSDDSTVRVW 226
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 126 GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGA----GGHRNEVLSVD 181
GH + +I P +++ S S+D +V +W + G +L GH V V
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 182 FHPSDIYRIASCGMDNTVKIWSM 204
+HP+ + S G DN + +W +
Sbjct: 139 WHPTAQNVLLSAGXDNVILVWDV 161
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 61/150 (40%), Gaps = 18/150 (12%)
Query: 123 SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDF 182
+ GH + + P ++++SA D + +W+V TG +L G H + + SVD+
Sbjct: 126 TLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTL-GPDVHPDTIYSVDW 184
Query: 183 HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY 242
SC D V++ ++ EK D P + VH+ +
Sbjct: 185 SRDGALICTSC-RDKRVRVIEPRKGTVVAEK-----DRPHE----------GTRPVHAVF 228
Query: 243 VDCNRWLGDFILSKSVDNEIVLWEPKMKEQ 272
V + L S+ + ++ LW+ K E+
Sbjct: 229 VSEGKILTTG-FSRMSERQVALWDTKHLEE 257
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 19/98 (19%)
Query: 172 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQF 231
GH VL + + P + IAS D TV +W ++P ++
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVW----------------EIPDGGLVLPLRE 122
Query: 232 PVFIASVHSNYVDCNRW---LGDFILSKSVDNEIVLWE 266
PV H+ V W + +LS DN I++W+
Sbjct: 123 PVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWD 160
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Query: 117 NEKLHKSFVG-HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRN 175
N+K+ K+F G H D + + + +S S D ++L + TG + + G H +
Sbjct: 172 NDKVIKTFSGIHNDVVRHLAV--VDDGHFISCSNDGLIKLVDXHTGDVLRTYEG---HES 226
Query: 176 EVLSVDFHPSDIYRIASCGMDNTVKIWS 203
V + P+ I SCG D TV+IWS
Sbjct: 227 FVYCIKLLPNG--DIVSCGEDRTVRIWS 252
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 107 NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG 161
+G+I+++D + +++ GH + I+ P +VS +D +VR+W+ + G
Sbjct: 204 DGLIKLVDXHTGDVLRTYEGHESFVYCIKLLP--NGDIVSCGEDRTVRIWSKENG 256
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 126 GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGA----GGHRNEVLSVD 181
GH + +I P +++ S S+D +V +W + G +L GH V V
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 182 FHPSDIYRIASCGMDNTVKIWSM 204
+HP+ + S G DN + +W +
Sbjct: 139 WHPTAQNVLLSAGCDNVILVWDV 161
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 61/150 (40%), Gaps = 18/150 (12%)
Query: 123 SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDF 182
+ GH + + P ++++SA D + +W+V TG +L G H + + SVD+
Sbjct: 126 TLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTL-GPDVHPDTIYSVDW 184
Query: 183 HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY 242
SC D V++ ++ EK D P + VH+ +
Sbjct: 185 SRDGALICTSC-RDKRVRVIEPRKGTVVAEK-----DRPHE----------GTRPVHAVF 228
Query: 243 VDCNRWLGDFILSKSVDNEIVLWEPKMKEQ 272
V + L S+ + ++ LW+ K E+
Sbjct: 229 VSEGKILTTG-FSRMSERQVALWDTKHLEE 257
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 9/112 (8%)
Query: 100 FLVAGGIN-GIIRVIDVSNEKLHKSFVGHGDSINE----IRTQPLKPSLVVSAS---KDE 151
F AG N I + E +H S+ I + + P + V +A+ D
Sbjct: 181 FASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDP 240
Query: 152 SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWS 203
S+ +W+++ L G H+ +LS+D+ D + + S G DNTV +W+
Sbjct: 241 SILIWDLRNANTPLQTLNQG-HQKGILSLDWCHQDEHLLLSSGRDNTVLLWN 291
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 66/299 (22%), Positives = 114/299 (38%), Gaps = 43/299 (14%)
Query: 88 TVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKP------ 141
T ++A + D IP LV+G ++G + ++ L + DS I + +
Sbjct: 15 TATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLD 74
Query: 142 -----SLVVSASKDESVRLWNV-QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM 195
++ A + S+ L++ + I A H + V +V F+ +AS G
Sbjct: 75 WSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGN 134
Query: 196 DNTVKIWSMKEFWTYVEKSFTWTDLPSKF-PTKYVQFPVFIASVHSNYVDCNRWLGDFIL 254
+ + IW M + T+ PS + P Q + V S + N+ L
Sbjct: 135 NGEIFIWDMNKC----------TESPSNYTPLTPGQSMSSVDEVIS--LAWNQSLAHVFA 182
Query: 255 SKSVDNEIVLWEPKMKEQ-------SPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAA 307
S N +W+ K K++ SP G I Q+ V E W K S A A
Sbjct: 183 SAGSSNFASIWDLKAKKEVIHLSYTSPNSG---IKQQLSVVE---WHPKNSTRV---ATA 233
Query: 308 IG-NREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 365
G + + I +W+L+++ L L+ K + D +LS D + W+
Sbjct: 234 TGSDNDPSILIWDLRNANTPL-QTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWN 291
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 33/157 (21%), Positives = 68/157 (43%), Gaps = 21/157 (13%)
Query: 71 IAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI-NGIIRV--IDVSNEKLHK--SFV 125
IA+LQ VD F + W+ N ++AG + NG + + + +N ++ F
Sbjct: 61 IASLQ--VDS----KFNDLDWSHNNK----IIAGALDNGSLELYSTNEANNAINSMARFS 110
Query: 126 GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ------TGICILIFAGAGGHRNEVLS 179
H S+ ++ + +++ S + + +W++ + L + +EV+S
Sbjct: 111 NHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVIS 170
Query: 180 VDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFT 216
+ ++ S + AS G N IW +K + S+T
Sbjct: 171 LAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYT 207
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 9/122 (7%)
Query: 99 PF-LVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN 157
PF +++G + + + + K +F H ++ +R P SL S D ++ L+N
Sbjct: 160 PFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYN 218
Query: 158 VQTGICILIFAGAG----GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEK 213
G +F H V + + P D +IAS D T+KIW++ VEK
Sbjct: 219 GVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVATL--KVEK 275
Query: 214 SF 215
+
Sbjct: 276 TI 277
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 36/95 (37%), Gaps = 21/95 (22%)
Query: 172 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQF 231
G + SVDF PS +RI S DNTV I+ F KF + + +
Sbjct: 145 GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF---------------KFKSTFGEH 189
Query: 232 PVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWE 266
F+ SV N G S D IVL+
Sbjct: 190 TKFVHSVRYNP------DGSLFASTGGDGTIVLYN 218
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 35.0 bits (79), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 33/58 (56%)
Query: 102 VAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 159
V+GG + ++V D+S + + KS+ H +N + P K ++ +S +D + LW+ +
Sbjct: 155 VSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTR 212
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 144 VVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWS 203
VS KD SV++W++ + + H +EV V P SCG D + +W
Sbjct: 154 AVSGGKDFSVKVWDLSQKAVLKSY---NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWD 210
Query: 204 MKE 206
++
Sbjct: 211 TRK 213
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 46/114 (40%), Gaps = 12/114 (10%)
Query: 253 ILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE 312
IL S + LWE KE ++ K+ E D S A G ++
Sbjct: 108 ILVASDSGAVELWEILEKESL-------LVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKD 160
Query: 313 GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTI-LSCCEDGAIWRWD 365
+ VW+L S VL + +H+ S + A TI LSC EDG I WD
Sbjct: 161 FSVKVWDL-SQKAVLKSYNAHS---SEVNCVAACPGKDTIFLSCGEDGRILLWD 210
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 34.7 bits (78), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 308 IGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 365
+G + +W+L + P + A L+ S A+S D SCC DG I WD
Sbjct: 114 VGGEASTLSIWDLAAPTPRIKAELT--SSAPACYALAISPDSKVCFSCCSDGNIAVWD 169
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 146 SASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMK 205
S D ++ +W++ + F G H + +D +D ++ + G+DNTV+ W ++
Sbjct: 158 SCCSDGNIAVWDLHNQTLVRQFQG---HTDGASCIDIS-NDGTKLWTGGLDNTVRSWDLR 213
Query: 206 EFWTYVEKSFT 216
E + FT
Sbjct: 214 EGRQLQQHDFT 224
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 9/83 (10%)
Query: 133 EIRTQPLKPS--LVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRI 190
++ + L P L VS + D S +LW+V+ G+C F GH +++ ++ F P+
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT---GHESDINAICFFPNG-NAF 241
Query: 191 ASCGMDNTVKIWSMK---EFWTY 210
A+ D T +++ ++ E TY
Sbjct: 242 ATGSDDATCRLFDLRADQELMTY 264
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 52/111 (46%), Gaps = 10/111 (9%)
Query: 100 FLVAGGINGIIRVIDV----SNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRL 155
++ GG++ I + ++ N ++ + GH ++ R L + +V++S D + L
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF--LDDNQIVTSSGDTTCAL 168
Query: 156 WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206
W+++T GH +V+S+ P D S D + K+W ++E
Sbjct: 169 WDIET---GQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVRE 215
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 9/83 (10%)
Query: 133 EIRTQPLKPS--LVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRI 190
++ + L P L VS + D S +LW+V+ G+C F GH +++ ++ F P+
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT---GHESDINAICFFPNG-NAF 241
Query: 191 ASCGMDNTVKIWSMK---EFWTY 210
A+ D T +++ ++ E TY
Sbjct: 242 ATGSDDATCRLFDLRADQELMTY 264
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 52/111 (46%), Gaps = 10/111 (9%)
Query: 100 FLVAGGINGIIRVIDV----SNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRL 155
++ GG++ I + ++ N ++ + GH ++ R L + +V++S D + L
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF--LDDNQIVTSSGDTTCAL 168
Query: 156 WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206
W+++T GH +V+S+ P D S D + K+W ++E
Sbjct: 169 WDIET---GQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVRE 215
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 9/83 (10%)
Query: 133 EIRTQPLKPS--LVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRI 190
++ + L P L VS + D S +LW+V+ G+C F GH +++ ++ F P+
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT---GHESDINAICFFPNG-NAF 241
Query: 191 ASCGMDNTVKIWSMK---EFWTY 210
A+ D T +++ ++ E TY
Sbjct: 242 ATGSDDATCRLFDLRADQELMTY 264
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 52/111 (46%), Gaps = 10/111 (9%)
Query: 100 FLVAGGINGIIRVIDV----SNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRL 155
++ GG++ I + ++ N ++ + GH ++ R L + +V++S D + L
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF--LDDNQIVTSSGDTTCAL 168
Query: 156 WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206
W+++T GH +V+S+ P D S D + K+W ++E
Sbjct: 169 WDIET---GQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVRE 215
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 9/83 (10%)
Query: 133 EIRTQPLKPS--LVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRI 190
++ + L P L VS + D S +LW+V+ G+C F GH +++ ++ F P+
Sbjct: 197 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT---GHESDINAICFFPNG-NAF 252
Query: 191 ASCGMDNTVKIWSMK---EFWTY 210
A+ D T +++ ++ E TY
Sbjct: 253 ATGSDDATCRLFDLRADQELMTY 275
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 52/111 (46%), Gaps = 10/111 (9%)
Query: 100 FLVAGGINGIIRVIDV----SNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRL 155
++ GG++ I + ++ N ++ + GH ++ R L + +V++S D + L
Sbjct: 122 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF--LDDNQIVTSSGDTTCAL 179
Query: 156 WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206
W+++T GH +V+S+ P D S D + K+W ++E
Sbjct: 180 WDIET---GQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVRE 226
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 9/83 (10%)
Query: 133 EIRTQPLKPS--LVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRI 190
++ + L P L VS + D S +LW+V+ G+C F GH +++ ++ F P+
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT---GHESDINAICFFPNG-NAF 241
Query: 191 ASCGMDNTVKIWSMK---EFWTY 210
A+ D T +++ ++ E TY
Sbjct: 242 ATGSDDATCRLFDLRADQELMTY 264
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 52/111 (46%), Gaps = 10/111 (9%)
Query: 100 FLVAGGINGIIRVIDV----SNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRL 155
++ GG++ I + ++ N ++ + GH ++ R L + +V++S D + L
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF--LDDNQIVTSSGDTTCAL 168
Query: 156 WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206
W+++T GH +V+S+ P D S D + K+W ++E
Sbjct: 169 WDIET---GQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVRE 215
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 123 SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDF 182
S G ++ + P + +V + +D + +W+V+ G + A H E+ V F
Sbjct: 231 SLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKA--HEAEMWEVHF 288
Query: 183 HPSDIYRIASCGMDNTVKIW 202
HPS+ + +C D ++ W
Sbjct: 289 HPSNPEHLFTCSEDGSLWHW 308
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 304 NAAAIGNREGKIFVWEL-QSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIW 362
+ A G ++G + +W++ Q + PV + + A+ + + + +C EDG++W
Sbjct: 250 HVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPS---NPEHLFTCSEDGSLW 306
Query: 363 RWDA 366
WDA
Sbjct: 307 HWDA 310
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/109 (20%), Positives = 50/109 (45%), Gaps = 2/109 (1%)
Query: 99 PFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 158
P +V G +G I + +++ ++ + + DS L+ +++ + +++W+
Sbjct: 161 PEIVTVGEDGRINLFRADHKEAVRT-IDNADSSTLHAVTFLRTPEILTVNSIGQLKIWDF 219
Query: 159 -QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206
Q G G R + VD HP+ + +A+ G D + IW +++
Sbjct: 220 RQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQ 268
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 31/58 (53%)
Query: 102 VAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 159
V+G + I+V D++ + + S+ H + + P K S+ +S S+D + LW+ +
Sbjct: 143 VSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTR 200
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 144 VVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWS 203
VS SKD +++W++ + + + H +V V P SC DN + +W
Sbjct: 142 AVSGSKDICIKVWDLAQQV---VLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWD 198
Query: 204 MK 205
+
Sbjct: 199 TR 200
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 173 HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMK 205
H +V VD+ P D RI +CG D +W++K
Sbjct: 51 HNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTLK 82
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 101 LVAGGINGIIRVIDVSNEKLHKSF-VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 159
+ G G I+V+D SN L + H I +++ P +L+ S+S+D +++W+V+
Sbjct: 109 FILGTTEGDIKVLD-SNFNLQREIDQAHVSEITKLKFFPSGEALI-SSSQDMQLKIWSVK 166
Query: 160 TGICILIFAGAGGHRNEVLSVDFHPSDIYR-IASCGMDNTVKIW 202
G GHR V D D R + S +D T+++W
Sbjct: 167 DGSNPRTLI---GHRATV--TDIAIIDRGRNVLSASLDGTIRLW 205
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 122 KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIF 167
++ +GH ++ +I + V+SAS D ++RLW TG I F
Sbjct: 172 RTLIGHRATVTDIAIID-RGRNVLSASLDGTIRLWECGTGTTIHTF 216
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 101 LVAGGINGIIRVIDVSNEKLHKSF-VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 159
+ G G I+V+D SN L + H I +++ P +L+ S+S+D +++W+V+
Sbjct: 112 FILGTTEGDIKVLD-SNFNLQREIDQAHVSEITKLKFFPSGEALI-SSSQDMQLKIWSVK 169
Query: 160 TGICILIFAGAGGHRNEVLSVDFHPSDIYR-IASCGMDNTVKIW 202
G GHR V D D R + S +D T+++W
Sbjct: 170 DGSNPRTLI---GHRATV--TDIAIIDRGRNVLSASLDGTIRLW 208
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 122 KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIF 167
++ +GH ++ +I + V+SAS D ++RLW TG I F
Sbjct: 175 RTLIGHRATVTDIAIID-RGRNVLSASLDGTIRLWECGTGTTIHTF 219
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 173 HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQF 231
H+ +V V +P + +A+ +D TVKIW +++ + SF ++ LP + P F
Sbjct: 250 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQ--VRGKASFLYS-LPHRHPVNAACF 305
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 173 HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMK 205
H +V +D+ P D RI +CG D +W++K
Sbjct: 51 HNGQVTGIDWAP-DSNRIVTCGTDRNAYVWTLK 82
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 173 HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQF 231
H+ +V V +P + +A+ +D TVKIW +++ + SF ++ LP + P F
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQ--VRGKASFLYS-LPHRHPVNAACF 304
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 173 HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQF 231
H+ +V V +P + +A+ +D TVKIW +++ + SF ++ LP + P F
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQ--VRGKASFLYS-LPHRHPVNAACF 304
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 110 IRVIDVSN--EKLHKSFVGHGDSINEIR-TQPLKPSLVVSASKDESVRLWNVQTGICILI 166
+++ DV N + L GH + ++ P+ +++ S S D V +W + G
Sbjct: 37 VKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKS 96
Query: 167 FAGAGGHRNEVLSVDFHPSDIYRIASCG 194
AG H + V SV + P D I +CG
Sbjct: 97 HEHAG-HDSSVNSVCWAPHDYGLILACG 123
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/128 (19%), Positives = 48/128 (37%), Gaps = 43/128 (33%)
Query: 122 KSFVGHGDSINEIRTQPLKPSLVVSA--SKDESVRLWNVQTGICIL-------------- 165
++F H ++ + P + +++ + + D +R+WNV +G C+
Sbjct: 190 QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWS 249
Query: 166 -----IFAGAG---------------------GHRNEVLSVDFHPSDIYRIASCGMDNTV 199
+ +G G GH + VLS+ P D +AS D T+
Sbjct: 250 PHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGATVASAAADETL 308
Query: 200 KIWSMKEF 207
++W E
Sbjct: 309 RLWRCFEL 316
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 57/142 (40%), Gaps = 19/142 (13%)
Query: 220 LPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTA 279
+PS P + + P + N VD W +L+ ++DN + LW +
Sbjct: 9 IPS-LPDRILDAPEIRNDYYLNLVD---WSSGNVLAVALDNSVYLWSAS---------SG 55
Query: 280 DILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSP 339
DILQ + + + + N A+G ++ +W++Q RL + S S
Sbjct: 56 DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-----RLRNMTSHSA 110
Query: 340 IRQTAMSYDGSTILSCCEDGAI 361
R ++S++ + S G I
Sbjct: 111 -RVGSLSWNSYILSSGSRSGHI 131
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/128 (19%), Positives = 48/128 (37%), Gaps = 43/128 (33%)
Query: 122 KSFVGHGDSINEIRTQPLKPSLVVSA--SKDESVRLWNVQTGICIL-------------- 165
++F H ++ + P + +++ + + D +R+WNV +G C+
Sbjct: 270 QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWS 329
Query: 166 -----IFAGAG---------------------GHRNEVLSVDFHPSDIYRIASCGMDNTV 199
+ +G G GH + VLS+ P D +AS D T+
Sbjct: 330 PHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGATVASAAADETL 388
Query: 200 KIWSMKEF 207
++W E
Sbjct: 389 RLWRCFEL 396
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 58/146 (39%), Gaps = 19/146 (13%)
Query: 220 LPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTA 279
+PS P + + P + N VD W +L+ ++DN + LW +
Sbjct: 89 IPS-LPDRILDAPEIRNDYYLNLVD---WSSGNVLAVALDNSVYLWSAS---------SG 135
Query: 280 DILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSP 339
DILQ + + + + N A+G ++ +W++Q RL + S S
Sbjct: 136 DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ-----KRLRNMTSHS- 189
Query: 340 IRQTAMSYDGSTILSCCEDGAIWRWD 365
R ++S++ + S G I D
Sbjct: 190 ARVGSLSWNSYILSSGSRSGHIHHHD 215
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 18/106 (16%)
Query: 114 DVSNEKLHKSFVGHGDSINEIR-TQPLKPSLVVSASKDESVRLWNVQ-----------TG 161
D SN +L S+ H SI I P ++ SAS D++V+LW
Sbjct: 41 DTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNK 100
Query: 162 ICILIFAGAGGHRNEVLSVDFHPSDI-YRIASCGMDNTVKIWSMKE 206
+C L + + SV F P+ + ++A G D ++++ E
Sbjct: 101 LCTL-----NDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALE 141
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/128 (19%), Positives = 48/128 (37%), Gaps = 43/128 (33%)
Query: 122 KSFVGHGDSINEIRTQPLKPSLVVSA--SKDESVRLWNVQTGICIL-------------- 165
++F H ++ + P + +++ + + D +R+WNV +G C+
Sbjct: 281 QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWS 340
Query: 166 -----IFAGAG---------------------GHRNEVLSVDFHPSDIYRIASCGMDNTV 199
+ +G G GH + VLS+ P D +AS D T+
Sbjct: 341 PHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGATVASAAADETL 399
Query: 200 KIWSMKEF 207
++W E
Sbjct: 400 RLWRCFEL 407
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 58/146 (39%), Gaps = 19/146 (13%)
Query: 220 LPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTA 279
+PS P + + P + N VD W +L+ ++DN + LW +
Sbjct: 100 IPS-LPDRILDAPEIRNDYYLNLVD---WSSGNVLAVALDNSVYLWSAS---------SG 146
Query: 280 DILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSP 339
DILQ + + + + N A+G ++ +W++Q RL + S S
Sbjct: 147 DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ-----KRLRNMTSHS- 200
Query: 340 IRQTAMSYDGSTILSCCEDGAIWRWD 365
R ++S++ + S G I D
Sbjct: 201 ARVGSLSWNSYILSSGSRSGHIHHHD 226
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 18/106 (16%)
Query: 114 DVSNEKLHKSFVGHGDSINEIR-TQPLKPSLVVSASKDESVRLWNVQ-----------TG 161
D SN +L S+ H SI I P ++ SAS D++V+LW
Sbjct: 43 DTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNK 102
Query: 162 ICILIFAGAGGHRNEVLSVDFHPSDI-YRIASCGMDNTVKIWSMKE 206
+C L + + SV F P+ + ++A G D ++++ E
Sbjct: 103 LCTL-----NDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALE 143
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 18/106 (16%)
Query: 114 DVSNEKLHKSFVGHGDSINEIR-TQPLKPSLVVSASKDESVRLWNVQ-----------TG 161
D SN +L S+ H SI I P ++ SAS D++V+LW
Sbjct: 43 DTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNK 102
Query: 162 ICILIFAGAGGHRNEVLSVDFHPSDI-YRIASCGMDNTVKIWSMKE 206
+C L + + SV F P+ + ++A G D ++++ E
Sbjct: 103 LCTL-----NDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALE 143
>pdb|3OTT|A Chain A, Crystal Structure Of The Extracellular Domain Of The
Putative One Component System Bt4673 From B.
Thetaiotaomicron
pdb|3OTT|B Chain B, Crystal Structure Of The Extracellular Domain Of The
Putative One Component System Bt4673 From B.
Thetaiotaomicron
Length = 758
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 96 DGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRL 155
D F GG NG+IR D + E+ + GD +T PL + + +D+ +L
Sbjct: 332 DSKGFYWFGGANGLIRFTDPAGERHDAIWYRMGD-----KTYPLSHNRIRHIYEDKEQQL 386
Query: 156 W 156
W
Sbjct: 387 W 387
>pdb|3VA6|A Chain A, Crystal Structure Of The Extracellular Domain Of The
Putative Hybrid Two Component System Bt4673 From B.
Thetaiotaomicron
pdb|3VA6|B Chain B, Crystal Structure Of The Extracellular Domain Of The
Putative Hybrid Two Component System Bt4673 From B.
Thetaiotaomicron
Length = 758
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 96 DGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRL 155
D F GG NG+IR D + E+ + GD +T PL + + +D+ +L
Sbjct: 332 DSKGFYWFGGANGLIRFTDPAGERHDAIWYRMGD-----KTYPLSHNRIRHIYEDKEQQL 386
Query: 156 W 156
W
Sbjct: 387 W 387
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 27/130 (20%)
Query: 144 VVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDF-HPSDIYRIASCGMDNTVKIW 202
+ + S D++++++ V+ LI GH V VD+ HP +ASC D V IW
Sbjct: 24 LATCSSDKTIKIFEVEGETHKLI-DTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82
Query: 203 SMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW----LGDFILSKSV 258
E++ W+ + + +VHS V+ +W G +L S
Sbjct: 83 K--------EENGRWSQIA-------------VHAVHSASVNSVQWAPHEYGPLLLVASS 121
Query: 259 DNEIVLWEPK 268
D ++ + E K
Sbjct: 122 DGKVSVVEFK 131
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 27/130 (20%)
Query: 144 VVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDF-HPSDIYRIASCGMDNTVKIW 202
+ + S D++++++ V+ LI GH V VD+ HP +ASC D V IW
Sbjct: 26 LATCSSDKTIKIFEVEGETHKLIDT-LTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 84
Query: 203 SMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW----LGDFILSKSV 258
E++ W+ + + +VHS V+ +W G +L S
Sbjct: 85 K--------EENGRWSQIA-------------VHAVHSASVNSVQWAPHEYGPLLLVASS 123
Query: 259 DNEIVLWEPK 268
D ++ + E K
Sbjct: 124 DGKVSVVEFK 133
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 27/124 (21%)
Query: 144 VVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDF-HPSDIYRIASCGMDNTVKIW 202
+ + S D++++++ V+ LI GH V VD+ HP +ASC D V IW
Sbjct: 24 MATCSSDKTIKIFEVEGETHKLIDT-LTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82
Query: 203 SMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW----LGDFILSKSV 258
E++ W+ + + +VHS V+ +W G +L S
Sbjct: 83 K--------EENGRWSQIA-------------VHAVHSASVNSVQWAPHEYGPMLLVASS 121
Query: 259 DNEI 262
D ++
Sbjct: 122 DGKV 125
>pdb|2CW3|A Chain A, X-Ray Structure Of Pmsod2, Superoxide Dismutase From
Perkinsus Marinus
pdb|2CW3|B Chain B, X-Ray Structure Of Pmsod2, Superoxide Dismutase From
Perkinsus Marinus
Length = 280
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 284 KYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 323
K P+ CD+W + D+ ++ AA R + WE S
Sbjct: 234 KIPLFTCDVWEHAYYLDYQHDRAAYLTRWWSLINWEFADS 273
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 173 HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQF 231
H+ +V +F+P + +A+ +D TVK+W ++ +K+ ++P + P F
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNI---KDKNSYIAEMPHEKPVNAAYF 257
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 173 HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQF 231
H+ +V +F+P + +A+ +D TVK+W ++ +K+ ++P + P F
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNI---KDKNSYIAEMPHEKPVNAAYF 258
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 27/124 (21%)
Query: 144 VVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDF-HPSDIYRIASCGMDNTVKIW 202
+ + S D++++++ V+ LI GH V VD+ HP +ASC D V IW
Sbjct: 24 LATCSSDKTIKIFEVEGETHKLIDT-LTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82
Query: 203 SMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW----LGDFILSKSV 258
E++ W+ + + +VHS V+ +W G +L S
Sbjct: 83 K--------EENGRWSQIA-------------VHAVHSASVNSVQWAPHEYGPLLLVASS 121
Query: 259 DNEI 262
D ++
Sbjct: 122 DGKV 125
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,676,848
Number of Sequences: 62578
Number of extensions: 491153
Number of successful extensions: 1662
Number of sequences better than 100.0: 104
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 1045
Number of HSP's gapped (non-prelim): 370
length of query: 369
length of database: 14,973,337
effective HSP length: 100
effective length of query: 269
effective length of database: 8,715,537
effective search space: 2344479453
effective search space used: 2344479453
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)