Query 017553
Match_columns 369
No_of_seqs 706 out of 1537
Neff 12.1
Searched_HMMs 46136
Date Fri Mar 29 09:36:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017553.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017553hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 2.9E-55 6.3E-60 337.4 26.1 294 21-368 103-440 (480)
2 KOG0271 Notchless-like WD40 re 100.0 3.7E-52 8.1E-57 320.3 24.4 309 3-365 129-479 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 9.7E-51 2.1E-55 316.1 22.9 284 30-365 172-458 (459)
4 KOG0286 G-protein beta subunit 100.0 2.5E-48 5.5E-53 289.0 32.4 292 19-365 41-343 (343)
5 KOG0279 G protein beta subunit 100.0 4.7E-46 1E-50 275.2 30.8 296 22-367 4-313 (315)
6 KOG0272 U4/U6 small nuclear ri 100.0 5.3E-47 1.1E-51 295.3 19.8 254 17-319 201-458 (459)
7 KOG0645 WD40 repeat protein [G 100.0 3.5E-44 7.7E-49 264.2 31.9 298 24-367 5-311 (312)
8 KOG0273 Beta-transducin family 100.0 1.6E-43 3.5E-48 279.6 28.6 289 31-368 176-483 (524)
9 KOG0315 G-protein beta subunit 100.0 3.5E-43 7.6E-48 255.9 28.1 275 49-368 10-289 (311)
10 KOG0285 Pleiotropic regulator 100.0 2.4E-43 5.2E-48 269.7 27.6 298 17-367 135-439 (460)
11 KOG0318 WD40 repeat stress pro 100.0 4.5E-42 9.7E-47 275.1 33.2 338 3-368 162-561 (603)
12 KOG0265 U5 snRNP-specific prot 100.0 8.7E-43 1.9E-47 260.4 26.8 292 24-366 38-337 (338)
13 KOG1034 Transcriptional repres 100.0 1.4E-42 3.1E-47 262.5 28.1 348 20-368 24-384 (385)
14 KOG0295 WD40 repeat-containing 100.0 4.9E-43 1.1E-47 268.3 25.8 292 20-366 95-405 (406)
15 KOG0284 Polyadenylation factor 100.0 1.8E-44 3.8E-49 280.1 17.4 281 32-366 95-379 (464)
16 KOG0277 Peroxisomal targeting 100.0 3.4E-42 7.4E-47 251.5 21.9 284 36-365 11-307 (311)
17 KOG0273 Beta-transducin family 100.0 2.8E-41 6.1E-46 266.9 28.6 277 33-367 235-523 (524)
18 KOG0296 Angio-associated migra 100.0 1.2E-40 2.5E-45 255.4 28.9 309 25-367 56-398 (399)
19 cd00200 WD40 WD40 domain, foun 100.0 1.3E-39 2.8E-44 267.7 36.0 284 27-365 3-289 (289)
20 KOG0263 Transcription initiati 100.0 5.8E-42 1.3E-46 287.2 21.9 278 25-368 370-650 (707)
21 PLN00181 protein SPA1-RELATED; 100.0 7.9E-40 1.7E-44 301.0 37.9 298 29-366 479-792 (793)
22 KOG0276 Vesicle coat complex C 100.0 6.6E-41 1.4E-45 273.8 25.8 287 23-363 3-295 (794)
23 KOG0319 WD40-repeat-containing 100.0 6.4E-41 1.4E-45 278.6 25.8 313 19-368 90-536 (775)
24 KOG0315 G-protein beta subunit 100.0 1.6E-39 3.4E-44 236.9 28.0 282 17-346 24-309 (311)
25 KOG0281 Beta-TrCP (transducin 100.0 4.5E-42 9.7E-47 262.1 15.4 276 31-368 195-478 (499)
26 KOG0316 Conserved WD40 repeat- 100.0 1.4E-39 3.1E-44 235.3 26.9 284 24-365 8-297 (307)
27 KOG0282 mRNA splicing factor [ 100.0 1.1E-41 2.4E-46 270.1 17.6 296 22-365 203-503 (503)
28 KOG0266 WD40 repeat-containing 100.0 1.6E-39 3.4E-44 278.8 31.8 294 21-367 146-454 (456)
29 KOG0318 WD40 repeat stress pro 100.0 1.7E-38 3.8E-43 254.6 35.1 348 4-368 74-518 (603)
30 KOG0291 WD40-repeat-containing 100.0 7.7E-39 1.7E-43 267.0 32.0 312 5-368 281-613 (893)
31 KOG0279 G protein beta subunit 100.0 3.4E-39 7.4E-44 238.9 26.5 266 13-321 43-313 (315)
32 KOG0286 G-protein beta subunit 100.0 1.5E-38 3.2E-43 237.1 28.5 241 81-366 53-302 (343)
33 KOG0293 WD40 repeat-containing 100.0 5.5E-39 1.2E-43 250.2 24.8 296 21-368 212-514 (519)
34 KOG0284 Polyadenylation factor 100.0 7.8E-41 1.7E-45 259.9 14.5 267 3-321 110-380 (464)
35 KOG0291 WD40-repeat-containing 100.0 1.7E-37 3.6E-42 259.1 33.3 285 29-368 261-551 (893)
36 KOG0319 WD40-repeat-containing 100.0 1.5E-37 3.3E-42 258.6 27.5 297 19-366 309-618 (775)
37 KOG0306 WD40-repeat-containing 100.0 3.4E-37 7.5E-42 257.1 29.0 287 28-368 368-665 (888)
38 KOG0285 Pleiotropic regulator 100.0 3.9E-38 8.5E-43 241.2 20.2 240 81-368 149-390 (460)
39 KOG0310 Conserved WD40 repeat- 100.0 3.6E-37 7.9E-42 244.9 26.3 279 33-364 26-306 (487)
40 KOG0292 Vesicle coat complex C 100.0 2.7E-37 5.9E-42 262.2 26.7 308 29-367 5-321 (1202)
41 KOG0316 Conserved WD40 repeat- 100.0 1.3E-37 2.9E-42 225.1 21.1 242 81-368 15-258 (307)
42 KOG0295 WD40 repeat-containing 100.0 6.8E-38 1.5E-42 240.2 20.6 244 81-368 106-365 (406)
43 KOG0281 Beta-TrCP (transducin 100.0 1.6E-38 3.4E-43 242.7 16.4 267 5-325 211-481 (499)
44 KOG0278 Serine/threonine kinas 100.0 8.6E-38 1.9E-42 228.1 18.1 286 29-368 10-298 (334)
45 KOG0263 Transcription initiati 100.0 2.3E-37 4.9E-42 259.8 23.0 252 55-355 427-703 (707)
46 KOG0313 Microtubule binding pr 100.0 2.9E-36 6.3E-41 232.5 27.1 284 31-367 103-418 (423)
47 KOG0643 Translation initiation 100.0 6.8E-36 1.5E-40 220.2 26.3 286 29-368 6-318 (327)
48 KOG0288 WD40 repeat protein Ti 100.0 1E-37 2.2E-42 243.0 17.6 288 21-365 163-459 (459)
49 KOG0305 Anaphase promoting com 100.0 3.7E-36 8E-41 247.8 27.3 273 39-368 183-462 (484)
50 KOG0283 WD40 repeat-containing 100.0 1.1E-36 2.5E-41 257.6 22.5 305 24-367 257-576 (712)
51 KOG0645 WD40 repeat protein [G 100.0 4.7E-35 1E-39 216.2 27.2 270 4-321 30-311 (312)
52 KOG0265 U5 snRNP-specific prot 100.0 7.5E-36 1.6E-40 223.5 22.9 248 79-368 43-297 (338)
53 KOG0274 Cdc4 and related F-box 100.0 4.9E-35 1.1E-39 250.2 29.7 274 32-368 207-483 (537)
54 KOG0277 Peroxisomal targeting 100.0 4.1E-36 8.8E-41 219.8 19.6 255 21-320 49-308 (311)
55 KOG0276 Vesicle coat complex C 100.0 5.6E-36 1.2E-40 245.2 22.2 244 82-368 12-258 (794)
56 KOG0300 WD40 repeat-containing 100.0 1.6E-35 3.4E-40 223.9 22.4 299 20-368 135-477 (481)
57 KOG0275 Conserved WD40 repeat- 100.0 6.7E-37 1.5E-41 232.1 15.0 292 25-365 204-507 (508)
58 KOG1446 Histone H3 (Lys4) meth 100.0 7.4E-34 1.6E-38 214.6 31.2 293 21-366 2-302 (311)
59 KOG0266 WD40 repeat-containing 100.0 1.6E-34 3.5E-39 248.0 30.1 244 81-368 157-410 (456)
60 KOG0292 Vesicle coat complex C 100.0 2E-35 4.3E-40 251.0 22.2 252 82-368 8-281 (1202)
61 KOG1407 WD40 repeat protein [F 100.0 5.4E-34 1.2E-38 209.5 26.5 287 27-368 14-312 (313)
62 KOG0641 WD40 repeat protein [G 100.0 5.8E-33 1.3E-37 200.3 31.0 309 19-367 19-349 (350)
63 KOG0296 Angio-associated migra 100.0 3.4E-34 7.3E-39 220.1 25.3 269 3-321 78-398 (399)
64 KOG0299 U3 snoRNP-associated p 100.0 2.5E-34 5.5E-39 227.1 24.9 297 27-364 136-453 (479)
65 KOG0772 Uncharacterized conser 100.0 5.4E-34 1.2E-38 228.5 25.5 300 21-364 155-484 (641)
66 PLN00181 protein SPA1-RELATED; 100.0 3.1E-33 6.8E-38 257.5 34.0 264 60-367 460-738 (793)
67 KOG0640 mRNA cleavage stimulat 100.0 6.5E-34 1.4E-38 214.4 22.4 293 27-367 106-426 (430)
68 KOG0282 mRNA splicing factor [ 100.0 4.9E-35 1.1E-39 232.5 16.2 245 81-368 212-463 (503)
69 KOG0301 Phospholipase A2-activ 100.0 3.3E-33 7.1E-38 231.5 26.8 284 21-367 2-288 (745)
70 KOG0264 Nucleosome remodeling 100.0 8.4E-34 1.8E-38 224.0 22.1 255 81-367 122-404 (422)
71 KOG0306 WD40-repeat-containing 100.0 3.6E-32 7.8E-37 227.4 30.8 338 4-367 80-580 (888)
72 cd00200 WD40 WD40 domain, foun 100.0 4.1E-32 8.8E-37 223.0 30.4 242 81-368 7-250 (289)
73 KOG0268 Sof1-like rRNA process 100.0 4.8E-34 1E-38 219.2 15.7 285 25-367 58-345 (433)
74 KOG0289 mRNA splicing factor [ 100.0 3E-32 6.6E-37 214.0 26.1 282 34-366 220-505 (506)
75 KOG0264 Nucleosome remodeling 100.0 4.6E-33 9.9E-38 219.8 21.0 262 31-323 122-406 (422)
76 PTZ00421 coronin; Provisional 100.0 1.6E-31 3.6E-36 228.4 32.1 270 32-348 19-314 (493)
77 KOG0313 Microtubule binding pr 100.0 1.8E-32 3.9E-37 211.7 23.3 257 22-321 133-418 (423)
78 KOG0274 Cdc4 and related F-box 100.0 2.7E-32 5.8E-37 233.5 27.0 251 18-325 233-486 (537)
79 KOG0294 WD40 repeat-containing 100.0 5.3E-32 1.1E-36 204.3 25.0 271 21-346 31-306 (362)
80 KOG0293 WD40 repeat-containing 100.0 5.3E-33 1.1E-37 217.0 20.2 251 22-323 258-515 (519)
81 KOG1446 Histone H3 (Lys4) meth 100.0 8.4E-31 1.8E-35 198.2 29.3 249 82-368 13-263 (311)
82 PTZ00421 coronin; Provisional 100.0 3.6E-31 7.9E-36 226.3 31.0 208 123-368 70-291 (493)
83 PTZ00420 coronin; Provisional 100.0 1.6E-30 3.4E-35 223.4 34.7 244 57-349 52-318 (568)
84 KOG0310 Conserved WD40 repeat- 100.0 3.1E-32 6.7E-37 216.9 21.0 245 27-322 62-310 (487)
85 PTZ00420 coronin; Provisional 100.0 8.4E-31 1.8E-35 225.0 30.6 227 103-368 49-294 (568)
86 KOG1539 WD repeat protein [Gen 100.0 1.4E-30 3E-35 220.3 30.6 311 15-365 184-646 (910)
87 KOG0973 Histone transcription 100.0 1.8E-31 4E-36 232.0 26.0 297 31-368 11-356 (942)
88 KOG0647 mRNA export protein (c 100.0 9.4E-31 2E-35 196.4 25.4 280 30-356 24-312 (347)
89 KOG1407 WD40 repeat protein [F 100.0 5.5E-31 1.2E-35 193.8 22.7 240 81-367 18-261 (313)
90 KOG0278 Serine/threonine kinas 100.0 2E-32 4.3E-37 200.2 14.5 245 25-324 51-300 (334)
91 KOG0294 WD40 repeat-containing 100.0 3.9E-30 8.5E-35 194.3 26.7 242 75-368 35-282 (362)
92 KOG0299 U3 snoRNP-associated p 100.0 5.4E-31 1.2E-35 208.4 22.1 244 81-368 140-411 (479)
93 KOG0275 Conserved WD40 repeat- 100.0 1.2E-31 2.5E-36 203.7 17.4 242 84-368 214-468 (508)
94 KOG1036 Mitotic spindle checkp 100.0 1.9E-30 4.1E-35 195.4 23.4 271 32-357 12-294 (323)
95 KOG0308 Conserved WD40 repeat- 100.0 1.6E-31 3.5E-36 220.0 18.8 291 31-368 19-328 (735)
96 KOG0639 Transducin-like enhanc 100.0 5E-31 1.1E-35 211.2 20.7 283 31-366 417-703 (705)
97 KOG4283 Transcription-coupled 100.0 1.7E-29 3.7E-34 189.3 27.0 310 30-366 40-364 (397)
98 KOG0647 mRNA export protein (c 100.0 4.7E-30 1E-34 192.7 23.7 245 81-367 25-281 (347)
99 KOG2106 Uncharacterized conser 100.0 3.7E-29 8.1E-34 200.4 30.2 284 29-365 196-519 (626)
100 KOG0269 WD40 repeat-containing 100.0 7.6E-31 1.6E-35 220.1 19.8 288 33-363 39-336 (839)
101 KOG2096 WD40 repeat protein [G 100.0 1E-29 2.2E-34 192.5 23.6 300 27-365 80-400 (420)
102 KOG0288 WD40 repeat protein Ti 100.0 1.5E-31 3.2E-36 208.8 13.7 245 81-369 173-419 (459)
103 KOG0305 Anaphase promoting com 100.0 8.2E-30 1.8E-34 210.5 24.2 243 31-325 215-465 (484)
104 KOG0321 WD40 repeat-containing 100.0 1.1E-29 2.5E-34 208.8 22.5 306 31-368 45-392 (720)
105 KOG1332 Vesicle coat complex C 100.0 4.8E-30 1E-34 187.1 18.0 255 81-367 9-286 (299)
106 KOG1036 Mitotic spindle checkp 100.0 3.5E-29 7.5E-34 188.7 23.0 244 81-368 11-263 (323)
107 KOG0643 Translation initiation 100.0 6.3E-29 1.4E-33 183.6 23.8 237 81-357 8-251 (327)
108 KOG0646 WD40 repeat protein [G 100.0 4.5E-29 9.7E-34 198.0 23.7 276 51-368 9-308 (476)
109 KOG1332 Vesicle coat complex C 100.0 1.4E-29 3E-34 184.7 18.9 257 30-322 8-287 (299)
110 KOG0289 mRNA splicing factor [ 100.0 4.7E-29 1E-33 196.1 23.3 265 5-320 235-505 (506)
111 KOG2055 WD40 repeat protein [G 100.0 1.3E-28 2.9E-33 195.1 25.6 291 32-367 212-512 (514)
112 KOG0308 Conserved WD40 repeat- 100.0 4.8E-30 1E-34 211.4 17.9 240 95-368 35-286 (735)
113 KOG0641 WD40 repeat protein [G 100.0 3.1E-27 6.8E-32 170.8 26.8 261 23-321 79-349 (350)
114 KOG0302 Ribosome Assembly prot 100.0 1.7E-28 3.7E-33 189.8 20.5 254 81-365 149-436 (440)
115 KOG0650 WD40 repeat nucleolar 100.0 8.5E-28 1.9E-32 196.5 25.5 292 20-364 385-732 (733)
116 KOG2445 Nuclear pore complex c 100.0 2.2E-27 4.7E-32 179.0 25.1 264 81-366 11-317 (361)
117 KOG0300 WD40 repeat-containing 100.0 2.2E-28 4.7E-33 185.5 19.1 242 81-368 146-429 (481)
118 KOG1063 RNA polymerase II elon 100.0 1.2E-27 2.6E-32 198.8 25.2 347 4-368 162-649 (764)
119 KOG0640 mRNA cleavage stimulat 100.0 9.1E-29 2E-33 186.7 17.0 256 24-321 163-426 (430)
120 KOG0268 Sof1-like rRNA process 100.0 4.9E-29 1.1E-33 191.8 15.6 264 3-323 81-347 (433)
121 KOG2048 WD40 repeat protein [G 100.0 1.7E-26 3.8E-31 191.4 31.7 293 30-365 22-317 (691)
122 KOG0270 WD40 repeat-containing 100.0 2.3E-28 5E-33 192.8 19.6 253 37-325 177-453 (463)
123 KOG0646 WD40 repeat protein [G 100.0 5.5E-28 1.2E-32 191.8 21.0 259 49-349 50-331 (476)
124 KOG0973 Histone transcription 100.0 1E-27 2.2E-32 208.9 24.3 255 25-323 61-357 (942)
125 KOG0301 Phospholipase A2-activ 100.0 8.4E-28 1.8E-32 199.7 22.5 251 11-322 35-289 (745)
126 KOG4328 WD40 protein [Function 100.0 3.5E-27 7.6E-32 186.9 24.6 311 21-366 174-494 (498)
127 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 5.9E-26 1.3E-30 187.9 33.4 265 50-368 2-280 (300)
128 KOG1273 WD40 repeat protein [G 100.0 3.5E-27 7.6E-32 178.5 23.4 298 24-367 16-322 (405)
129 KOG0772 Uncharacterized conser 100.0 8.2E-28 1.8E-32 193.3 19.9 257 81-367 165-445 (641)
130 KOG0270 WD40 repeat-containing 100.0 3.9E-27 8.4E-32 186.0 23.2 232 100-368 194-450 (463)
131 KOG1408 WD40 repeat protein [F 100.0 1.3E-27 2.9E-32 199.5 21.6 303 29-368 365-714 (1080)
132 KOG1539 WD repeat protein [Gen 100.0 6.2E-26 1.3E-30 192.4 31.6 312 33-368 159-607 (910)
133 KOG1408 WD40 repeat protein [F 100.0 1.1E-26 2.5E-31 194.0 26.3 293 33-368 260-672 (1080)
134 KOG2106 Uncharacterized conser 100.0 8.4E-26 1.8E-30 181.4 29.6 314 17-368 138-478 (626)
135 KOG0283 WD40 repeat-containing 100.0 9.3E-28 2E-32 203.9 19.1 205 121-368 259-533 (712)
136 KOG1445 Tumor-specific antigen 100.0 1E-27 2.2E-32 197.8 18.1 165 174-367 627-798 (1012)
137 KOG2445 Nuclear pore complex c 100.0 4.4E-26 9.6E-31 172.0 24.8 264 30-321 10-318 (361)
138 KOG0302 Ribosome Assembly prot 100.0 8.9E-27 1.9E-31 180.3 21.5 254 30-314 148-432 (440)
139 KOG0267 Microtubule severing p 100.0 1.1E-28 2.4E-33 205.8 10.9 253 50-359 5-260 (825)
140 KOG0321 WD40 repeat-containing 100.0 5.3E-27 1.1E-31 193.2 19.9 275 87-368 53-348 (720)
141 KOG0269 WD40 repeat-containing 100.0 1.9E-27 4.2E-32 199.9 17.4 239 86-367 42-296 (839)
142 KOG1274 WD40 repeat protein [G 100.0 5.6E-26 1.2E-30 194.7 26.2 250 81-368 11-263 (933)
143 KOG1274 WD40 repeat protein [G 100.0 1.4E-25 3.1E-30 192.2 27.8 282 31-364 11-297 (933)
144 KOG2048 WD40 repeat protein [G 99.9 2.4E-24 5.3E-29 178.8 30.0 332 2-368 123-506 (691)
145 KOG1063 RNA polymerase II elon 99.9 2E-24 4.2E-29 179.8 28.0 300 29-367 263-699 (764)
146 KOG0307 Vesicle coat complex C 99.9 1.1E-26 2.3E-31 203.6 14.6 249 81-368 62-328 (1049)
147 KOG1273 WD40 repeat protein [G 99.9 1.9E-25 4.2E-30 169.2 19.4 243 89-367 27-280 (405)
148 KOG1009 Chromatin assembly com 99.9 3.1E-24 6.8E-29 167.9 26.3 311 32-367 12-372 (434)
149 KOG0267 Microtubule severing p 99.9 3.8E-27 8.2E-32 196.7 10.8 236 27-313 22-260 (825)
150 KOG4378 Nuclear protein COP1 [ 99.9 4.5E-25 9.7E-30 177.0 21.8 262 36-349 37-305 (673)
151 KOG4378 Nuclear protein COP1 [ 99.9 2.6E-25 5.7E-30 178.3 20.0 269 50-368 4-281 (673)
152 KOG1188 WD40 repeat protein [G 99.9 2.4E-25 5.1E-30 170.4 18.5 287 50-367 41-346 (376)
153 KOG4283 Transcription-coupled 99.9 6.1E-25 1.3E-29 165.0 18.9 257 30-323 98-367 (397)
154 KOG2919 Guanine nucleotide-bin 99.9 3.6E-24 7.8E-29 162.9 23.1 282 36-358 52-361 (406)
155 KOG0639 Transducin-like enhanc 99.9 1.6E-25 3.5E-30 179.8 16.1 237 32-320 464-703 (705)
156 KOG0290 Conserved WD40 repeat- 99.9 1.9E-23 4.1E-28 156.7 25.3 305 17-363 29-361 (364)
157 KOG1007 WD repeat protein TSSC 99.9 2.8E-24 6.1E-29 161.0 19.3 263 26-322 56-362 (370)
158 KOG0307 Vesicle coat complex C 99.9 1.8E-25 3.9E-30 196.1 15.0 261 24-324 56-330 (1049)
159 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.8E-22 3.9E-27 167.1 31.6 273 22-347 20-300 (300)
160 KOG4328 WD40 protein [Function 99.9 3.7E-24 8E-29 169.9 19.8 253 81-367 184-450 (498)
161 KOG2055 WD40 repeat protein [G 99.9 5.7E-24 1.2E-28 169.0 20.6 253 25-321 249-512 (514)
162 KOG1007 WD repeat protein TSSC 99.9 3.1E-24 6.8E-29 160.7 17.6 238 22-268 111-361 (370)
163 KOG4227 WD40 repeat protein [G 99.9 1.4E-23 3E-28 164.0 20.6 302 26-365 49-385 (609)
164 KOG1334 WD40 repeat protein [G 99.9 1.9E-24 4E-29 173.0 14.7 320 21-366 130-465 (559)
165 KOG2096 WD40 repeat protein [G 99.9 1.5E-23 3.3E-28 159.3 18.3 230 110-367 63-308 (420)
166 KOG1538 Uncharacterized conser 99.9 2.8E-23 6E-28 172.8 21.4 273 35-367 14-293 (1081)
167 KOG0644 Uncharacterized conser 99.9 5.9E-25 1.3E-29 186.7 10.0 284 21-366 178-467 (1113)
168 KOG0322 G-protein beta subunit 99.9 1.4E-23 3.1E-28 155.2 15.7 301 26-366 7-322 (323)
169 KOG1587 Cytoplasmic dynein int 99.9 2.5E-22 5.5E-27 171.2 25.4 274 60-368 224-517 (555)
170 KOG1517 Guanine nucleotide bin 99.9 2.5E-22 5.5E-27 175.1 24.4 301 31-368 1062-1382(1387)
171 KOG1034 Transcriptional repres 99.9 5.6E-23 1.2E-27 156.7 17.7 264 31-321 87-383 (385)
172 KOG1310 WD40 repeat protein [G 99.9 2.1E-22 4.5E-27 163.9 21.3 177 21-206 38-232 (758)
173 KOG0303 Actin-binding protein 99.9 1.6E-22 3.4E-27 158.0 19.2 208 121-369 74-296 (472)
174 KOG2919 Guanine nucleotide-bin 99.9 1.9E-22 4.2E-27 153.6 18.8 240 33-312 104-361 (406)
175 KOG0303 Actin-binding protein 99.9 6.9E-22 1.5E-26 154.4 20.8 228 81-348 79-320 (472)
176 COG2319 FOG: WD40 repeat [Gene 99.9 9.3E-20 2E-24 158.9 35.9 291 28-368 60-360 (466)
177 KOG0290 Conserved WD40 repeat- 99.9 1.5E-21 3.3E-26 146.6 18.7 251 31-311 94-356 (364)
178 KOG0649 WD40 repeat protein [G 99.9 4.5E-20 9.7E-25 135.4 24.8 283 34-364 11-313 (325)
179 KOG0650 WD40 repeat nucleolar 99.9 1E-21 2.2E-26 161.3 18.1 239 80-365 397-678 (733)
180 KOG0642 Cell-cycle nuclear pro 99.9 4.2E-22 9E-27 162.4 15.3 266 21-367 282-561 (577)
181 COG2319 FOG: WD40 repeat [Gene 99.9 1.7E-18 3.6E-23 151.0 37.2 292 23-368 145-443 (466)
182 KOG1587 Cytoplasmic dynein int 99.9 1.3E-20 2.8E-25 160.8 22.7 263 23-323 233-518 (555)
183 KOG0649 WD40 repeat protein [G 99.9 1E-19 2.2E-24 133.6 23.9 242 28-318 57-313 (325)
184 KOG1524 WD40 repeat-containing 99.9 6.5E-21 1.4E-25 154.9 18.1 265 31-363 12-282 (737)
185 KOG1963 WD40 repeat protein [G 99.9 3.2E-19 6.9E-24 153.2 27.9 310 30-368 202-539 (792)
186 KOG1188 WD40 repeat protein [G 99.9 2.7E-20 5.9E-25 142.9 17.2 291 3-321 42-346 (376)
187 KOG2110 Uncharacterized conser 99.9 2E-18 4.3E-23 134.2 27.2 237 84-368 6-249 (391)
188 PRK11028 6-phosphogluconolacto 99.9 2.3E-18 4.9E-23 143.8 29.1 272 56-367 9-304 (330)
189 KOG2110 Uncharacterized conser 99.9 1.9E-17 4.1E-22 128.8 31.6 281 33-368 5-331 (391)
190 KOG1538 Uncharacterized conser 99.9 4.7E-20 1E-24 153.9 17.3 232 85-365 14-250 (1081)
191 KOG1009 Chromatin assembly com 99.9 4.5E-19 9.7E-24 139.3 21.1 260 22-324 54-375 (434)
192 KOG1523 Actin-related protein 99.9 1.9E-18 4.1E-23 131.8 23.9 225 31-271 8-239 (361)
193 KOG4227 WD40 repeat protein [G 99.8 2.5E-19 5.4E-24 140.4 19.2 252 81-367 54-322 (609)
194 KOG1240 Protein kinase contain 99.8 1E-18 2.2E-23 155.2 24.9 313 20-365 1035-1431(1431)
195 KOG1445 Tumor-specific antigen 99.8 2.1E-19 4.6E-24 149.2 17.4 227 104-368 599-845 (1012)
196 KOG1310 WD40 repeat protein [G 99.8 1.7E-19 3.7E-24 147.2 15.7 231 120-368 42-304 (758)
197 KOG0771 Prolactin regulatory e 99.8 3.4E-19 7.4E-24 140.7 16.8 206 88-367 149-354 (398)
198 KOG0644 Uncharacterized conser 99.8 7.4E-21 1.6E-25 162.2 7.9 236 81-367 188-426 (1113)
199 KOG1272 WD40-repeat-containing 99.8 2.4E-20 5.2E-25 148.9 9.8 265 36-359 132-401 (545)
200 KOG1524 WD40 repeat-containing 99.8 1.3E-18 2.8E-23 141.7 17.2 208 50-319 76-284 (737)
201 KOG2111 Uncharacterized conser 99.8 1.1E-15 2.4E-20 116.9 28.6 278 36-365 8-320 (346)
202 KOG1517 Guanine nucleotide bin 99.8 2.9E-17 6.2E-22 144.1 22.3 242 95-368 1074-1334(1387)
203 KOG1523 Actin-related protein 99.8 3.7E-17 8E-22 124.9 19.7 235 82-348 9-260 (361)
204 KOG1963 WD40 repeat protein [G 99.8 1.4E-16 3E-21 137.2 25.2 298 29-369 12-377 (792)
205 KOG4497 Uncharacterized conser 99.8 4.7E-17 1E-21 124.9 19.3 306 38-367 13-391 (447)
206 KOG2111 Uncharacterized conser 99.8 5.9E-16 1.3E-20 118.3 25.0 235 88-368 10-257 (346)
207 KOG2139 WD40 repeat protein [G 99.8 5.8E-16 1.3E-20 120.5 24.0 288 33-366 98-430 (445)
208 PF02239 Cytochrom_D1: Cytochr 99.8 3.1E-15 6.7E-20 124.6 30.3 305 20-368 23-348 (369)
209 KOG3881 Uncharacterized conser 99.8 1.5E-16 3.2E-21 124.8 20.2 252 82-368 54-321 (412)
210 PRK11028 6-phosphogluconolacto 99.8 7.3E-15 1.6E-19 122.8 31.8 265 21-322 23-305 (330)
211 KOG3881 Uncharacterized conser 99.8 1.2E-16 2.5E-21 125.4 19.1 271 32-348 54-342 (412)
212 KOG1334 WD40 repeat protein [G 99.8 3.9E-17 8.5E-22 131.5 15.8 261 81-368 140-425 (559)
213 KOG0322 G-protein beta subunit 99.8 8.3E-17 1.8E-21 119.8 15.2 259 20-320 42-322 (323)
214 KOG1272 WD40-repeat-containing 99.7 1.1E-17 2.3E-22 134.0 11.0 225 88-365 134-360 (545)
215 PRK01742 tolB translocation pr 99.7 1.1E-15 2.5E-20 131.5 22.4 230 60-348 186-426 (429)
216 KOG2394 WD40 protein DMR-N9 [G 99.7 7.8E-16 1.7E-20 125.7 19.7 213 48-299 134-384 (636)
217 KOG1240 Protein kinase contain 99.7 5.4E-15 1.2E-19 132.0 25.1 267 63-368 1034-1335(1431)
218 KOG0642 Cell-cycle nuclear pro 99.7 3E-16 6.4E-21 128.7 14.9 226 13-271 321-564 (577)
219 KOG0280 Uncharacterized conser 99.7 8.3E-15 1.8E-19 111.0 21.3 268 60-366 48-332 (339)
220 KOG2321 WD40 repeat protein [G 99.7 5.9E-15 1.3E-19 121.6 22.2 282 31-364 49-340 (703)
221 KOG2394 WD40 protein DMR-N9 [G 99.7 4.1E-16 8.8E-21 127.3 15.3 169 51-250 188-384 (636)
222 KOG1409 Uncharacterized conser 99.7 2.1E-15 4.6E-20 116.6 17.9 252 21-322 12-271 (404)
223 KOG1354 Serine/threonine prote 99.7 8.9E-15 1.9E-19 113.2 20.0 307 32-364 24-431 (433)
224 KOG2139 WD40 repeat protein [G 99.7 5E-14 1.1E-18 109.9 23.6 289 5-321 114-431 (445)
225 PRK01742 tolB translocation pr 99.7 5.3E-15 1.1E-19 127.4 19.6 219 27-300 197-426 (429)
226 KOG0771 Prolactin regulatory e 99.7 3.2E-15 6.9E-20 118.6 14.5 196 37-269 148-355 (398)
227 KOG4497 Uncharacterized conser 99.7 2.1E-15 4.5E-20 116.1 12.9 222 92-365 15-238 (447)
228 KOG0309 Conserved WD40 repeat- 99.7 1.7E-15 3.6E-20 128.5 13.5 292 32-368 23-340 (1081)
229 KOG2321 WD40 repeat protein [G 99.7 3.3E-14 7.2E-19 117.3 19.9 245 82-367 50-302 (703)
230 PRK05137 tolB translocation pr 99.6 3.5E-13 7.6E-18 116.6 26.9 211 108-367 182-412 (435)
231 PF10282 Lactonase: Lactonase, 99.6 2.5E-11 5.5E-16 101.6 35.1 276 59-368 14-323 (345)
232 PRK03629 tolB translocation pr 99.6 4.9E-13 1.1E-17 115.0 24.3 231 60-348 181-428 (429)
233 PRK04922 tolB translocation pr 99.6 5E-13 1.1E-17 115.5 23.8 211 108-367 184-411 (433)
234 PF08662 eIF2A: Eukaryotic tra 99.6 1.7E-13 3.6E-18 104.0 18.4 150 37-206 9-180 (194)
235 KOG4547 WD40 repeat-containing 99.6 8.6E-13 1.9E-17 109.5 23.3 190 48-269 4-221 (541)
236 PRK03629 tolB translocation pr 99.6 5.3E-13 1.1E-17 114.8 23.1 217 29-299 194-427 (429)
237 PRK04922 tolB translocation pr 99.6 1E-12 2.2E-17 113.5 23.9 230 60-347 186-432 (433)
238 PRK02889 tolB translocation pr 99.6 1.2E-12 2.7E-17 112.6 24.1 205 108-359 176-392 (427)
239 KOG2315 Predicted translation 99.6 8.8E-12 1.9E-16 103.0 27.3 294 33-367 34-390 (566)
240 KOG0974 WD-repeat protein WDR6 99.6 3.2E-13 6.8E-18 119.0 19.8 261 50-368 18-289 (967)
241 PF02239 Cytochrom_D1: Cytochr 99.6 3E-12 6.4E-17 106.9 24.3 276 49-368 5-303 (369)
242 PRK05137 tolB translocation pr 99.6 3E-12 6.6E-17 110.8 24.6 230 60-348 184-433 (435)
243 KOG0280 Uncharacterized conser 99.6 1.5E-12 3.2E-17 99.0 19.3 256 32-322 68-334 (339)
244 KOG0974 WD-repeat protein WDR6 99.5 1.5E-12 3.2E-17 115.0 20.5 189 49-272 100-292 (967)
245 PRK02889 tolB translocation pr 99.5 6.8E-12 1.5E-16 108.1 24.1 233 60-348 178-425 (427)
246 KOG1354 Serine/threonine prote 99.5 3.1E-12 6.7E-17 99.4 18.9 261 83-367 25-359 (433)
247 KOG2041 WD40 repeat protein [G 99.5 5.9E-12 1.3E-16 107.2 21.8 292 32-369 13-339 (1189)
248 TIGR02800 propeller_TolB tol-p 99.5 2E-11 4.4E-16 105.8 25.5 209 108-365 170-395 (417)
249 TIGR02658 TTQ_MADH_Hv methylam 99.5 1.5E-09 3.1E-14 88.9 33.8 272 58-368 27-331 (352)
250 PF08662 eIF2A: Eukaryotic tra 99.5 1.1E-11 2.4E-16 94.0 19.3 147 89-270 11-181 (194)
251 COG2706 3-carboxymuconate cycl 99.5 9.5E-10 2.1E-14 86.7 29.1 281 57-368 15-322 (346)
252 TIGR02800 propeller_TolB tol-p 99.5 4.6E-11 1E-15 103.6 24.6 210 60-322 172-398 (417)
253 KOG1912 WD40 repeat protein [G 99.5 8.8E-12 1.9E-16 107.0 19.0 332 20-368 42-552 (1062)
254 PF10282 Lactonase: Lactonase, 99.5 7E-09 1.5E-13 87.0 35.7 271 20-322 24-323 (345)
255 KOG4547 WD40 repeat-containing 99.5 2.6E-11 5.7E-16 100.9 20.4 190 140-367 4-220 (541)
256 KOG1912 WD40 repeat protein [G 99.5 1.3E-11 2.8E-16 106.0 18.7 263 36-322 18-305 (1062)
257 KOG4532 WD40-like repeat conta 99.4 1.4E-10 3E-15 87.4 21.7 236 100-366 86-330 (344)
258 COG4946 Uncharacterized protei 99.4 1.5E-09 3.2E-14 88.6 28.9 147 48-210 331-482 (668)
259 KOG1409 Uncharacterized conser 99.4 1.2E-11 2.5E-16 96.2 15.5 223 118-368 14-271 (404)
260 PRK00178 tolB translocation pr 99.4 2.2E-10 4.8E-15 99.4 24.8 210 109-367 180-406 (430)
261 TIGR03300 assembly_YfgL outer 99.4 1.1E-09 2.3E-14 93.5 28.0 255 50-364 106-376 (377)
262 KOG1064 RAVE (regulator of V-A 99.4 4.7E-12 1E-16 117.8 13.9 193 30-271 2205-2401(2439)
263 PLN02919 haloacid dehalogenase 99.4 2.7E-09 5.8E-14 101.1 32.1 267 37-368 571-889 (1057)
264 TIGR03300 assembly_YfgL outer 99.4 2.1E-09 4.6E-14 91.7 28.7 269 49-368 65-339 (377)
265 KOG1064 RAVE (regulator of V-A 99.4 3.1E-12 6.7E-17 119.0 11.3 190 127-368 2207-2399(2439)
266 PF15492 Nbas_N: Neuroblastoma 99.4 3.3E-09 7.1E-14 81.3 25.2 227 48-326 8-264 (282)
267 PRK00178 tolB translocation pr 99.4 3.7E-10 8E-15 98.1 23.2 160 29-207 194-365 (430)
268 KOG2314 Translation initiation 99.4 6.3E-10 1.4E-14 92.3 22.6 295 20-367 238-573 (698)
269 PRK04792 tolB translocation pr 99.4 3.4E-10 7.3E-15 98.0 22.5 158 30-206 214-383 (448)
270 PRK04792 tolB translocation pr 99.4 6.7E-10 1.5E-14 96.2 24.3 215 82-347 216-446 (448)
271 TIGR02658 TTQ_MADH_Hv methylam 99.4 1.6E-08 3.6E-13 82.8 30.0 277 20-331 34-338 (352)
272 COG5354 Uncharacterized protei 99.3 9.3E-10 2E-14 90.3 22.2 281 29-367 28-348 (561)
273 KOG4714 Nucleoporin [Nuclear s 99.3 2.6E-11 5.5E-16 90.8 11.9 207 49-266 101-316 (319)
274 KOG4190 Uncharacterized conser 99.3 2.6E-11 5.6E-16 100.5 12.2 290 28-363 730-1032(1034)
275 PRK01029 tolB translocation pr 99.3 2.8E-09 6.1E-14 91.6 25.0 221 85-349 186-426 (428)
276 KOG3914 WD repeat protein WDR4 99.3 1.2E-10 2.5E-15 92.7 13.0 158 37-210 66-228 (390)
277 PF04762 IKI3: IKI3 family; I 99.3 2.8E-08 6.1E-13 92.6 30.2 288 32-367 74-456 (928)
278 KOG2315 Predicted translation 99.3 3.4E-09 7.4E-14 88.1 20.8 232 37-323 129-392 (566)
279 KOG2314 Translation initiation 99.2 8.5E-09 1.8E-13 85.8 22.2 276 36-367 213-525 (698)
280 KOG4532 WD40-like repeat conta 99.2 8.8E-09 1.9E-13 77.9 19.8 242 50-323 85-333 (344)
281 KOG3914 WD repeat protein WDR4 99.2 5.8E-10 1.3E-14 88.8 14.2 151 94-273 71-228 (390)
282 COG4946 Uncharacterized protei 99.2 2.7E-07 5.8E-12 75.8 29.5 145 182-368 327-478 (668)
283 PRK01029 tolB translocation pr 99.2 1.3E-08 2.7E-13 87.7 23.5 202 29-271 180-406 (428)
284 COG5354 Uncharacterized protei 99.2 4.8E-08 1E-12 80.6 25.3 274 34-367 72-395 (561)
285 COG5170 CDC55 Serine/threonine 99.2 8.1E-10 1.7E-14 85.2 14.0 263 32-319 25-365 (460)
286 COG2706 3-carboxymuconate cycl 99.2 6.6E-07 1.4E-11 71.1 32.2 284 31-346 37-345 (346)
287 KOG2041 WD40 repeat protein [G 99.2 8.3E-10 1.8E-14 94.5 14.9 241 82-359 13-280 (1189)
288 PF04762 IKI3: IKI3 family; I 99.2 5.3E-07 1.1E-11 84.3 34.1 314 32-366 208-563 (928)
289 KOG4714 Nucleoporin [Nuclear s 99.2 1.7E-09 3.7E-14 81.3 14.3 143 100-269 103-255 (319)
290 KOG1275 PAB-dependent poly(A) 99.2 1.4E-09 3.1E-14 95.5 15.2 184 140-365 146-340 (1118)
291 PF15492 Nbas_N: Neuroblastoma 99.2 3E-07 6.6E-12 70.7 25.6 230 95-368 7-260 (282)
292 KOG2695 WD40 repeat protein [G 99.1 2.3E-10 5.1E-15 89.3 8.6 154 89-271 217-379 (425)
293 KOG0309 Conserved WD40 repeat- 99.1 3.9E-10 8.4E-15 96.7 10.5 256 36-322 70-340 (1081)
294 PF07433 DUF1513: Protein of u 99.1 3.4E-07 7.3E-12 72.6 26.1 243 36-357 7-276 (305)
295 COG5170 CDC55 Serine/threonine 99.1 1.8E-09 4E-14 83.3 13.1 232 128-368 26-310 (460)
296 KOG4190 Uncharacterized conser 99.1 3E-10 6.4E-15 94.4 9.4 205 81-323 733-950 (1034)
297 PRK11138 outer membrane biogen 99.1 1.9E-07 4.1E-12 80.2 26.1 263 50-366 121-393 (394)
298 KOG0882 Cyclophilin-related pe 99.1 4.1E-09 8.9E-14 85.4 14.4 254 82-368 8-306 (558)
299 PF13360 PQQ_2: PQQ-like domai 99.1 1.2E-07 2.6E-12 75.6 21.9 227 60-324 5-233 (238)
300 PF13360 PQQ_2: PQQ-like domai 99.1 2.3E-07 5E-12 73.9 23.2 217 107-368 2-231 (238)
301 KOG2695 WD40 repeat protein [G 99.1 8E-10 1.7E-14 86.4 8.0 172 145-347 228-402 (425)
302 KOG1275 PAB-dependent poly(A) 99.1 9.1E-09 2E-13 90.6 15.2 180 100-319 149-340 (1118)
303 KOG4649 PQQ (pyrrolo-quinoline 99.0 3.2E-06 7E-11 64.3 26.1 140 49-205 23-165 (354)
304 KOG1008 Uncharacterized conser 99.0 3.3E-10 7.2E-15 95.6 5.0 232 83-349 56-315 (783)
305 KOG1645 RING-finger-containing 99.0 1.4E-07 3E-12 75.7 19.3 79 81-162 191-269 (463)
306 KOG2066 Vacuolar assembly/sort 99.0 1.1E-07 2.4E-12 82.8 19.9 190 85-322 41-234 (846)
307 PF08450 SGL: SMP-30/Gluconola 99.0 8.1E-06 1.8E-10 65.3 30.3 217 38-302 4-238 (246)
308 KOG1645 RING-finger-containing 99.0 9.1E-08 2E-12 76.7 16.7 159 21-194 181-350 (463)
309 PRK11138 outer membrane biogen 99.0 4E-06 8.7E-11 72.1 28.3 276 49-368 69-354 (394)
310 PF00400 WD40: WD domain, G-be 99.0 2.2E-09 4.7E-14 58.3 5.2 39 118-157 1-39 (39)
311 PF00400 WD40: WD domain, G-be 98.9 7.4E-09 1.6E-13 56.1 6.6 37 327-365 3-39 (39)
312 PF08450 SGL: SMP-30/Gluconola 98.9 1.3E-05 2.8E-10 64.2 27.7 225 89-356 5-244 (246)
313 PLN02919 haloacid dehalogenase 98.9 9.8E-07 2.1E-11 84.1 24.2 216 36-271 626-891 (1057)
314 KOG0882 Cyclophilin-related pe 98.9 4.8E-08 1E-12 79.4 12.1 210 126-368 7-232 (558)
315 PRK04043 tolB translocation pr 98.9 8.4E-06 1.8E-10 70.0 26.2 209 108-366 169-399 (419)
316 PRK04043 tolB translocation pr 98.8 1.6E-05 3.5E-10 68.3 26.1 194 85-323 189-402 (419)
317 PF06977 SdiA-regulated: SdiA- 98.7 1.5E-05 3.2E-10 62.6 21.9 223 123-364 16-247 (248)
318 KOG2114 Vacuolar assembly/sort 98.7 7.4E-06 1.6E-10 72.5 22.0 196 95-324 33-246 (933)
319 KOG1920 IkappaB kinase complex 98.7 9.4E-06 2E-10 74.6 23.0 219 128-367 68-322 (1265)
320 KOG1920 IkappaB kinase complex 98.7 6.5E-05 1.4E-09 69.4 27.8 244 81-366 66-364 (1265)
321 KOG2066 Vacuolar assembly/sort 98.7 2E-06 4.4E-11 75.4 17.4 188 32-268 38-233 (846)
322 PF04053 Coatomer_WDAD: Coatom 98.7 4E-05 8.6E-10 65.8 24.8 235 29-321 28-262 (443)
323 PF11768 DUF3312: Protein of u 98.7 1.1E-05 2.5E-10 68.6 20.6 88 111-206 239-330 (545)
324 KOG1832 HIV-1 Vpr-binding prot 98.6 2.8E-08 6.2E-13 87.5 4.6 165 21-207 1089-1257(1516)
325 cd00216 PQQ_DH Dehydrogenases 98.6 0.00011 2.5E-09 64.8 25.4 283 50-368 62-425 (488)
326 PF11768 DUF3312: Protein of u 98.6 0.00014 3E-09 62.3 24.4 71 289-367 259-329 (545)
327 PF08596 Lgl_C: Lethal giant l 98.6 0.00011 2.3E-09 62.4 24.0 255 85-358 3-327 (395)
328 KOG3617 WD40 and TPR repeat-co 98.6 6.1E-06 1.3E-10 73.0 16.3 108 37-159 19-131 (1416)
329 KOG2114 Vacuolar assembly/sort 98.6 2.9E-05 6.3E-10 68.9 20.4 203 136-367 31-243 (933)
330 KOG3621 WD40 repeat-containing 98.5 0.00019 4.1E-09 62.6 22.4 135 48-195 44-189 (726)
331 PF14783 BBS2_Mid: Ciliary BBS 98.4 4.9E-05 1.1E-09 50.5 14.6 104 86-200 2-109 (111)
332 KOG1008 Uncharacterized conser 98.4 8.5E-08 1.8E-12 81.6 2.1 192 5-206 74-276 (783)
333 PRK02888 nitrous-oxide reducta 98.4 0.00038 8.3E-09 61.2 23.7 274 52-368 69-405 (635)
334 KOG1832 HIV-1 Vpr-binding prot 98.4 2E-07 4.4E-12 82.4 4.0 197 119-368 1092-1292(1516)
335 KOG3617 WD40 and TPR repeat-co 98.4 1.4E-05 3.1E-10 70.8 14.7 108 89-206 21-132 (1416)
336 PF06433 Me-amine-dh_H: Methyl 98.4 0.00067 1.5E-08 55.1 23.5 260 38-332 40-329 (342)
337 PF03178 CPSF_A: CPSF A subuni 98.4 0.001 2.2E-08 55.6 25.9 219 108-363 2-261 (321)
338 cd00216 PQQ_DH Dehydrogenases 98.4 0.0015 3.3E-08 57.8 28.3 158 50-213 111-327 (488)
339 PF00780 CNH: CNH domain; Int 98.4 0.00089 1.9E-08 54.6 24.6 237 95-368 5-256 (275)
340 PF03178 CPSF_A: CPSF A subuni 98.3 0.00043 9.3E-09 57.8 21.0 185 151-368 2-203 (321)
341 KOG3621 WD40 repeat-containing 98.3 8E-06 1.7E-10 70.7 9.8 116 242-367 37-154 (726)
342 KOG4649 PQQ (pyrrolo-quinoline 98.2 0.0011 2.4E-08 51.0 21.9 105 95-207 20-125 (354)
343 KOG4441 Proteins containing BT 98.2 0.0003 6.5E-09 63.0 19.3 225 100-367 287-546 (571)
344 PF14783 BBS2_Mid: Ciliary BBS 98.2 0.00024 5.2E-09 47.2 13.9 104 36-154 2-109 (111)
345 PF00930 DPPIV_N: Dipeptidyl p 98.2 0.0025 5.3E-08 54.0 27.0 79 59-148 24-119 (353)
346 PF07433 DUF1513: Protein of u 98.2 0.0018 3.9E-08 52.0 21.3 155 39-208 56-250 (305)
347 PHA02713 hypothetical protein; 98.2 0.00039 8.5E-09 62.4 19.4 217 109-368 273-534 (557)
348 PF08596 Lgl_C: Lethal giant l 98.1 0.0017 3.6E-08 55.3 20.7 213 130-367 3-290 (395)
349 PF06977 SdiA-regulated: SdiA- 98.1 0.0026 5.6E-08 50.2 24.4 205 82-318 20-247 (248)
350 PF06433 Me-amine-dh_H: Methyl 98.1 0.0036 7.7E-08 51.0 24.8 268 59-368 18-321 (342)
351 PF08553 VID27: VID27 cytoplas 98.0 0.0014 3E-08 60.0 19.7 148 140-320 492-646 (794)
352 PF04841 Vps16_N: Vps16, N-ter 98.0 0.0071 1.5E-07 52.1 22.9 204 109-350 62-272 (410)
353 PF04841 Vps16_N: Vps16, N-ter 98.0 0.006 1.3E-07 52.6 22.1 181 152-366 62-245 (410)
354 PF04053 Coatomer_WDAD: Coatom 98.0 0.0036 7.8E-08 54.1 20.5 221 91-367 38-262 (443)
355 KOG4640 Anaphase-promoting com 98.0 4.1E-05 9E-10 65.7 8.3 94 84-184 21-115 (665)
356 PF14655 RAB3GAP2_N: Rab3 GTPa 98.0 0.0088 1.9E-07 50.9 28.9 95 38-138 6-118 (415)
357 KOG2444 WD40 repeat protein [G 98.0 1.8E-05 4E-10 59.2 5.4 105 250-368 70-178 (238)
358 PF00930 DPPIV_N: Dipeptidyl p 97.9 0.0042 9.1E-08 52.6 19.3 223 106-366 21-265 (353)
359 smart00320 WD40 WD40 repeats. 97.9 3.5E-05 7.6E-10 41.0 4.4 38 119-157 3-40 (40)
360 PRK02888 nitrous-oxide reducta 97.9 0.017 3.6E-07 51.3 22.4 157 95-269 202-405 (635)
361 smart00320 WD40 WD40 repeats. 97.8 8.8E-05 1.9E-09 39.3 5.9 36 328-365 5-40 (40)
362 COG3490 Uncharacterized protei 97.8 0.009 1.9E-07 46.9 20.7 102 37-148 71-180 (366)
363 COG0823 TolB Periplasmic compo 97.8 0.0063 1.4E-07 52.4 18.1 203 108-354 173-386 (425)
364 PHA02713 hypothetical protein; 97.7 0.0074 1.6E-07 54.4 19.3 193 95-327 302-539 (557)
365 PF08553 VID27: VID27 cytoplas 97.7 0.0013 2.7E-08 60.2 13.9 105 250-366 542-646 (794)
366 KOG4640 Anaphase-promoting com 97.7 0.00033 7.1E-09 60.4 8.8 75 128-208 20-95 (665)
367 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.6 0.042 9E-07 49.2 28.1 114 49-169 70-199 (527)
368 PF14583 Pectate_lyase22: Olig 97.6 0.033 7.2E-07 46.5 28.2 147 48-206 46-223 (386)
369 KOG2444 WD40 repeat protein [G 97.5 0.00046 9.9E-09 52.0 7.2 103 100-206 72-178 (238)
370 KOG4441 Proteins containing BT 97.5 0.014 3.1E-07 52.6 17.5 189 140-368 284-500 (571)
371 COG3391 Uncharacterized conser 97.5 0.05 1.1E-06 46.7 28.5 263 60-367 13-283 (381)
372 COG0823 TolB Periplasmic compo 97.5 0.054 1.2E-06 46.8 20.3 116 83-205 192-312 (425)
373 COG3386 Gluconolactonase [Carb 97.4 0.036 7.9E-07 45.5 17.7 147 50-206 78-244 (307)
374 PF00780 CNH: CNH domain; Int 97.4 0.046 1E-06 44.6 27.3 142 48-207 6-167 (275)
375 KOG1897 Damage-specific DNA bi 97.4 0.11 2.4E-06 48.2 28.3 297 32-368 529-857 (1096)
376 KOG2079 Vacuolar assembly/sort 97.4 0.02 4.4E-07 53.2 16.7 99 100-205 101-203 (1206)
377 PF05096 Glu_cyclase_2: Glutam 97.4 0.046 1E-06 43.1 19.7 202 82-311 41-251 (264)
378 PF05694 SBP56: 56kDa selenium 97.4 0.0086 1.9E-07 50.4 13.2 215 100-368 89-343 (461)
379 PHA03098 kelch-like protein; P 97.4 0.039 8.5E-07 49.9 18.8 104 95-206 293-415 (534)
380 PF02897 Peptidase_S9_N: Proly 97.4 0.088 1.9E-06 45.9 29.3 246 36-328 126-411 (414)
381 COG3204 Uncharacterized protei 97.3 0.048 1E-06 43.3 16.2 167 29-206 81-264 (316)
382 PHA03098 kelch-like protein; P 97.3 0.028 6E-07 50.8 17.5 189 140-368 294-512 (534)
383 PHA02790 Kelch-like protein; P 97.3 0.039 8.4E-07 49.0 17.9 186 140-368 271-471 (480)
384 PF12894 Apc4_WD40: Anaphase-p 97.3 0.0013 2.8E-08 36.5 5.5 31 337-367 11-41 (47)
385 PF12894 Apc4_WD40: Anaphase-p 97.2 0.0012 2.5E-08 36.7 4.7 35 128-164 11-45 (47)
386 COG3204 Uncharacterized protei 97.2 0.085 1.8E-06 42.0 20.5 221 124-364 81-309 (316)
387 PRK13616 lipoprotein LpqB; Pro 97.2 0.18 3.9E-06 45.8 20.2 150 34-205 350-525 (591)
388 PF14583 Pectate_lyase22: Olig 97.1 0.12 2.6E-06 43.3 24.5 253 64-358 16-303 (386)
389 KOG2395 Protein involved in va 97.1 0.053 1.2E-06 46.6 15.5 145 49-206 345-501 (644)
390 PRK13616 lipoprotein LpqB; Pro 97.1 0.08 1.7E-06 48.0 17.8 74 289-367 447-525 (591)
391 KOG2079 Vacuolar assembly/sort 97.1 0.0051 1.1E-07 56.9 9.9 113 241-366 90-202 (1206)
392 COG3391 Uncharacterized conser 97.1 0.17 3.6E-06 43.5 24.1 194 95-324 83-286 (381)
393 KOG1916 Nuclear protein, conta 97.0 0.00036 7.7E-09 62.9 1.8 171 28-207 127-325 (1283)
394 COG3386 Gluconolactonase [Carb 96.9 0.17 3.6E-06 41.7 22.7 207 49-299 37-264 (307)
395 KOG1897 Damage-specific DNA bi 96.9 0.37 7.9E-06 45.1 20.0 178 60-269 752-943 (1096)
396 KOG2395 Protein involved in va 96.9 0.021 4.6E-07 48.9 11.3 139 100-268 348-500 (644)
397 PF05694 SBP56: 56kDa selenium 96.9 0.24 5.3E-06 42.1 25.8 253 48-356 86-392 (461)
398 PHA02790 Kelch-like protein; P 96.8 0.28 6.2E-06 43.6 18.7 103 96-206 271-385 (480)
399 PF08728 CRT10: CRT10; InterP 96.8 0.15 3.2E-06 46.5 16.4 174 187-366 49-245 (717)
400 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.7 0.42 9.2E-06 43.0 30.0 152 51-210 122-338 (527)
401 PF12234 Rav1p_C: RAVE protein 96.6 0.11 2.4E-06 46.7 14.1 126 22-159 18-156 (631)
402 PF14870 PSII_BNR: Photosynthe 96.6 0.33 7.1E-06 39.8 22.2 156 82-265 143-301 (302)
403 PF05096 Glu_cyclase_2: Glutam 96.6 0.28 6.1E-06 38.9 22.5 171 21-209 31-207 (264)
404 PF08728 CRT10: CRT10; InterP 96.5 0.25 5.3E-06 45.2 16.0 153 49-204 49-245 (717)
405 PF02897 Peptidase_S9_N: Proly 96.5 0.52 1.1E-05 41.2 33.6 246 90-368 128-405 (414)
406 KOG3630 Nuclear pore complex, 96.5 0.063 1.4E-06 50.6 12.0 154 176-354 102-260 (1405)
407 PF15390 DUF4613: Domain of un 96.4 0.28 6E-06 43.2 14.7 122 240-366 56-185 (671)
408 COG4590 ABC-type uncharacteriz 96.4 0.03 6.4E-07 47.2 8.7 245 89-368 118-387 (733)
409 COG3490 Uncharacterized protei 96.3 0.42 9.1E-06 38.0 14.8 157 40-209 120-314 (366)
410 PF10313 DUF2415: Uncharacteri 96.3 0.028 6E-07 30.2 5.3 33 129-161 1-35 (43)
411 PF14727 PHTB1_N: PTHB1 N-term 96.3 0.66 1.4E-05 40.0 28.6 163 37-206 23-205 (418)
412 PF12234 Rav1p_C: RAVE protein 96.1 0.65 1.4E-05 42.1 16.2 107 95-206 39-157 (631)
413 PRK13684 Ycf48-like protein; P 96.1 0.71 1.5E-05 38.9 17.0 154 33-204 172-330 (334)
414 KOG2247 WD40 repeat-containing 96.1 0.0025 5.3E-08 53.8 1.2 144 37-201 38-184 (615)
415 PF15390 DUF4613: Domain of un 95.8 1.2 2.6E-05 39.4 16.3 120 84-206 57-187 (671)
416 KOG4499 Ca2+-binding protein R 95.8 0.67 1.4E-05 35.8 16.4 172 50-251 71-264 (310)
417 PF10313 DUF2415: Uncharacteri 95.8 0.051 1.1E-06 29.2 4.9 31 338-368 1-34 (43)
418 KOG3630 Nuclear pore complex, 95.7 0.17 3.8E-06 47.8 11.1 112 89-206 104-229 (1405)
419 PLN02153 epithiospecifier prot 95.5 1.3 2.8E-05 37.5 21.2 64 140-206 85-168 (341)
420 KOG2247 WD40 repeat-containing 95.5 0.0021 4.6E-08 54.2 -1.3 143 95-267 44-187 (615)
421 PF14655 RAB3GAP2_N: Rab3 GTPa 95.5 0.15 3.2E-06 43.7 9.4 94 21-125 295-407 (415)
422 TIGR03074 PQQ_membr_DH membran 95.5 2.3 5E-05 40.1 22.4 109 100-212 196-351 (764)
423 COG5276 Uncharacterized conser 95.4 1.1 2.3E-05 36.0 19.8 145 173-355 85-231 (370)
424 COG3823 Glutamine cyclotransfe 95.4 0.84 1.8E-05 34.6 17.8 131 19-166 30-165 (262)
425 KOG2377 Uncharacterized conser 95.3 0.56 1.2E-05 40.0 11.7 123 172-323 64-187 (657)
426 COG5276 Uncharacterized conser 95.3 1.2 2.7E-05 35.7 28.2 280 33-367 86-369 (370)
427 PF07569 Hira: TUP1-like enhan 95.2 0.15 3.3E-06 39.7 8.1 81 242-325 14-99 (219)
428 PF14727 PHTB1_N: PTHB1 N-term 95.1 2 4.3E-05 37.2 25.7 109 95-206 34-164 (418)
429 KOG4499 Ca2+-binding protein R 95.0 1.3 2.8E-05 34.3 17.7 98 243-347 160-263 (310)
430 KOG2280 Vacuolar assembly/sort 94.9 3.1 6.7E-05 38.2 16.9 88 107-201 63-151 (829)
431 PF10168 Nup88: Nuclear pore c 94.8 3.5 7.5E-05 38.7 21.9 77 129-207 85-181 (717)
432 PF10647 Gmad1: Lipoprotein Lp 94.8 1.7 3.7E-05 34.9 16.3 148 35-197 25-187 (253)
433 PF10168 Nup88: Nuclear pore c 94.8 2.4 5.1E-05 39.7 15.6 78 288-368 83-180 (717)
434 PF07995 GSDH: Glucose / Sorbo 94.7 2.2 4.9E-05 35.9 28.1 80 281-362 245-330 (331)
435 TIGR03074 PQQ_membr_DH membran 94.7 4 8.6E-05 38.7 23.1 119 49-169 194-354 (764)
436 TIGR03547 muta_rot_YjhT mutatr 94.6 2.5 5.4E-05 35.9 20.8 42 314-359 291-332 (346)
437 PF14781 BBS2_N: Ciliary BBSom 94.6 1.1 2.3E-05 31.4 11.5 105 252-365 12-123 (136)
438 KOG2280 Vacuolar assembly/sort 94.4 4.1 8.9E-05 37.4 16.6 50 151-206 64-113 (829)
439 PF14870 PSII_BNR: Photosynthe 94.4 2.5 5.4E-05 34.8 26.7 235 36-318 64-301 (302)
440 TIGR03118 PEPCTERM_chp_1 conse 94.0 2.8 6.1E-05 34.1 19.3 214 130-367 24-279 (336)
441 PF07569 Hira: TUP1-like enhan 93.9 0.54 1.2E-05 36.7 8.4 68 297-367 18-95 (219)
442 PF14781 BBS2_N: Ciliary BBSom 93.9 1.5 3.3E-05 30.7 11.5 100 100-206 12-126 (136)
443 TIGR03548 mutarot_permut cycli 93.7 3.7 8E-05 34.5 20.7 99 249-358 123-233 (323)
444 PRK10115 protease 2; Provision 93.4 6.9 0.00015 36.8 32.9 111 35-158 128-254 (686)
445 TIGR03548 mutarot_permut cycli 93.4 4.2 9.2E-05 34.1 20.9 64 140-206 72-148 (323)
446 COG4257 Vgb Streptogramin lyas 93.2 3.6 7.8E-05 32.9 20.0 225 94-365 70-303 (353)
447 KOG2377 Uncharacterized conser 93.1 5.3 0.00012 34.5 19.5 116 81-206 64-186 (657)
448 KOG1983 Tomosyn and related SN 93.0 5 0.00011 39.3 14.6 28 89-117 39-66 (993)
449 PF14761 HPS3_N: Hermansky-Pud 92.7 3.7 8E-05 31.6 17.0 149 100-267 30-213 (215)
450 PRK14131 N-acetylneuraminic ac 92.5 6.4 0.00014 33.9 20.8 40 315-358 314-353 (376)
451 COG3292 Predicted periplasmic 92.5 7.4 0.00016 34.7 16.8 152 32-202 163-315 (671)
452 PF02333 Phytase: Phytase; In 92.5 6.1 0.00013 33.7 20.8 203 140-368 67-291 (381)
453 KOG4460 Nuclear pore complex, 92.3 6.5 0.00014 34.6 12.7 76 291-368 105-199 (741)
454 PLN02153 epithiospecifier prot 92.1 6.6 0.00014 33.3 19.1 54 313-368 217-285 (341)
455 KOG1898 Splicing factor 3b, su 92.1 12 0.00026 36.1 16.2 180 60-268 855-1048(1205)
456 TIGR02276 beta_rpt_yvtn 40-res 92.0 0.7 1.5E-05 24.7 4.8 32 95-126 1-32 (42)
457 PLN02193 nitrile-specifier pro 91.9 8.8 0.00019 34.3 18.6 62 305-368 331-411 (470)
458 KOG1916 Nuclear protein, conta 91.9 0.23 5E-06 45.9 4.2 96 106-206 151-266 (1283)
459 PF12768 Rax2: Cortical protei 91.8 4.2 9.1E-05 33.1 10.8 98 107-206 15-124 (281)
460 COG5167 VID27 Protein involved 91.8 8.6 0.00019 33.8 13.2 151 136-321 474-632 (776)
461 PLN00033 photosystem II stabil 91.8 8 0.00017 33.5 17.1 153 33-202 238-396 (398)
462 KOG1900 Nuclear pore complex, 91.6 3.2 6.9E-05 40.6 11.2 160 105-270 96-274 (1311)
463 PF14761 HPS3_N: Hermansky-Pud 91.5 5.2 0.00011 30.8 15.0 123 142-271 29-166 (215)
464 COG3823 Glutamine cyclotransfe 91.3 5.4 0.00012 30.5 13.8 105 140-271 55-161 (262)
465 PF11635 Med16: Mediator compl 91.3 14 0.0003 35.3 19.8 214 100-316 64-345 (753)
466 COG5167 VID27 Protein involved 91.2 6.8 0.00015 34.4 11.7 146 95-270 477-634 (776)
467 PF02333 Phytase: Phytase; In 91.0 9.2 0.0002 32.7 23.0 156 37-206 57-238 (381)
468 KOG4460 Nuclear pore complex, 91.0 11 0.00023 33.4 13.0 29 174-203 103-131 (741)
469 KOG1900 Nuclear pore complex, 90.8 10 0.00023 37.4 13.6 34 335-368 240-273 (1311)
470 PF12657 TFIIIC_delta: Transcr 90.5 2.4 5.2E-05 31.7 8.0 29 339-367 87-121 (173)
471 TIGR02604 Piru_Ver_Nterm putat 90.4 11 0.00023 32.5 16.7 63 290-358 124-204 (367)
472 PF12768 Rax2: Cortical protei 90.2 9 0.0002 31.3 11.4 90 60-158 18-122 (281)
473 PLN02193 nitrile-specifier pro 90.1 13 0.00029 33.1 22.8 64 140-206 228-303 (470)
474 PRK10115 protease 2; Provision 90.0 17 0.00038 34.3 30.5 108 91-206 132-256 (686)
475 COG4590 ABC-type uncharacteriz 89.7 2.2 4.7E-05 36.6 7.6 165 29-207 216-388 (733)
476 PF12657 TFIIIC_delta: Transcr 89.7 3.6 7.9E-05 30.8 8.3 33 174-206 85-122 (173)
477 TIGR02276 beta_rpt_yvtn 40-res 89.4 2.1 4.5E-05 22.7 5.6 29 140-168 2-31 (42)
478 PF10214 Rrn6: RNA polymerase 89.4 21 0.00045 34.3 23.7 180 31-218 77-289 (765)
479 PF10647 Gmad1: Lipoprotein Lp 89.0 11 0.00023 30.4 21.5 166 130-323 25-199 (253)
480 PF11715 Nup160: Nucleoporin N 88.8 2.4 5.3E-05 38.7 8.1 69 100-168 160-257 (547)
481 PRK13684 Ycf48-like protein; P 87.7 16 0.00035 30.9 30.1 288 19-365 33-329 (334)
482 COG1520 FOG: WD40-like repeat 87.1 18 0.0004 31.0 21.8 226 96-365 68-303 (370)
483 PF11635 Med16: Mediator compl 87.1 29 0.00063 33.3 21.5 71 290-362 260-345 (753)
484 smart00564 PQQ beta-propeller 86.9 2 4.3E-05 21.3 3.9 26 142-167 7-32 (33)
485 PF08801 Nucleoporin_N: Nup133 86.8 21 0.00046 31.4 14.1 31 338-368 190-220 (422)
486 TIGR03606 non_repeat_PQQ dehyd 86.8 22 0.00047 31.5 18.3 33 173-206 28-60 (454)
487 PF10214 Rrn6: RNA polymerase 86.5 32 0.00069 33.1 24.8 80 126-205 77-176 (765)
488 PF08801 Nucleoporin_N: Nup133 85.7 24 0.00052 31.0 14.4 31 175-206 190-220 (422)
489 PF11715 Nup160: Nucleoporin N 85.4 4.7 0.0001 36.8 8.0 64 305-368 160-249 (547)
490 PF01011 PQQ: PQQ enzyme repea 85.2 3.2 6.9E-05 21.7 4.2 27 143-169 2-28 (38)
491 smart00036 CNH Domain found in 84.9 21 0.00046 29.6 23.9 232 96-368 12-271 (302)
492 TIGR03547 muta_rot_YjhT mutatr 84.8 23 0.00051 30.0 21.9 43 151-196 168-210 (346)
493 PF07676 PD40: WD40-like Beta 84.6 4 8.7E-05 21.3 4.5 28 290-318 9-38 (39)
494 PF07995 GSDH: Glucose / Sorbo 84.3 24 0.00052 29.8 13.6 106 87-198 5-136 (331)
495 PRK14131 N-acetylneuraminic ac 83.6 28 0.00061 30.0 20.6 41 152-195 190-230 (376)
496 PF01011 PQQ: PQQ enzyme repea 83.3 2.9 6.2E-05 21.8 3.5 27 100-126 2-28 (38)
497 KOG3522 Predicted guanine nucl 83.2 30 0.00065 32.7 11.5 141 51-206 549-698 (925)
498 PF05935 Arylsulfotrans: Aryls 83.2 34 0.00074 30.7 25.3 159 36-208 102-304 (477)
499 PF01731 Arylesterase: Arylest 83.1 8.5 0.00018 24.8 6.1 51 312-369 35-86 (86)
500 KOG0783 Uncharacterized conser 82.9 42 0.00091 31.9 12.2 53 305-361 400-452 (1267)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.9e-55 Score=337.42 Aligned_cols=294 Identities=21% Similarity=0.325 Sum_probs=261.1
Q ss_pred cceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCcc
Q 017553 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIP 99 (369)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~ 99 (369)
+-.++...+.||.++|.|++|+| +|..||+|++|. +++||+.+..+..+.+ .|..-|.|++|+ |||+
T Consensus 103 pvtrCssS~~GH~e~Vl~~~fsp----~g~~l~tGsGD~TvR~WD~~TeTp~~t~K-----gH~~WVlcvaws--PDgk- 170 (480)
T KOG0271|consen 103 PVTRCSSSIAGHGEAVLSVQFSP----TGSRLVTGSGDTTVRLWDLDTETPLFTCK-----GHKNWVLCVAWS--PDGK- 170 (480)
T ss_pred ccceeccccCCCCCcEEEEEecC----CCceEEecCCCceEEeeccCCCCcceeec-----CCccEEEEEEEC--CCcc-
Confidence 34456677899999999999999 699999999999 9999999999998888 588899999999 9999
Q ss_pred EEEEeecCCeEEEEEcCCccc-cceeeccccceEEEEecCC----CCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCC
Q 017553 100 FLVAGGINGIIRVIDVSNEKL-HKSFVGHGDSINEIRTQPL----KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR 174 (369)
Q Consensus 100 ~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 174 (369)
.|++|+.||+|++||.+++++ ...+.+|...|++++|.|- ...+|++++.||.|+|||+..++++..+. +|+
T Consensus 171 ~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ls---gHT 247 (480)
T KOG0271|consen 171 KIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLS---GHT 247 (480)
T ss_pred hhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEec---cCc
Confidence 999999999999999999876 5789999999999999873 45689999999999999999999999998 899
Q ss_pred CcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee-----
Q 017553 175 NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL----- 249 (369)
Q Consensus 175 ~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----- 249 (369)
.+|+|++|- +..++++|+.|++|++|+...+ .....+.+|...|+.++.+
T Consensus 248 ~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG-----------------------~~~r~lkGHahwvN~lalsTdy~L 302 (480)
T KOG0271|consen 248 ASVTCVRWG--GEGLIYSGSQDRTIKVWRALDG-----------------------KLCRELKGHAHWVNHLALSTDYVL 302 (480)
T ss_pred cceEEEEEc--CCceEEecCCCceEEEEEccch-----------------------hHHHhhcccchheeeeeccchhhh
Confidence 999999997 6789999999999999999883 3344556666666655543
Q ss_pred ---------------------------------CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEE
Q 017553 250 ---------------------------------GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIK 296 (369)
Q Consensus 250 ---------------------------------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 296 (369)
++.+++|+.|.++.+|+....+. ++.++.+|..-|+.+.
T Consensus 303 Rtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk--------pi~rmtgHq~lVn~V~ 374 (480)
T KOG0271|consen 303 RTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK--------PITRMTGHQALVNHVS 374 (480)
T ss_pred hccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc--------chhhhhchhhheeeEE
Confidence 34599999999999999877654 7888899999999999
Q ss_pred EeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 297 FSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 297 ~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
||||++ ++|+++-|..|++||-.++ +.+..+. +|-++|..++|+.|.++|++|+.|.++++|++++
T Consensus 375 fSPd~r--~IASaSFDkSVkLW~g~tG--k~lasfR--GHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~t 440 (480)
T KOG0271|consen 375 FSPDGR--YIASASFDKSVKLWDGRTG--KFLASFR--GHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRT 440 (480)
T ss_pred ECCCcc--EEEEeecccceeeeeCCCc--chhhhhh--hccceeEEEEeccCccEEEEcCCCceEEEEEeee
Confidence 999997 9999999999999999999 5677777 9999999999999999999999999999999875
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.7e-52 Score=320.30 Aligned_cols=309 Identities=18% Similarity=0.270 Sum_probs=272.4
Q ss_pred cccccccccccccccccccceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEE-EeeeccC
Q 017553 3 RTAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAA-LQSYVDE 80 (369)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~-~~~~~~~ 80 (369)
++|+|..+...++.+. ..-.+..+.++|...|.|++|+| ||+.+|+|+.++ |++||.++|+++.. +.
T Consensus 129 ~l~tGsGD~TvR~WD~--~TeTp~~t~KgH~~WVlcvawsP----Dgk~iASG~~dg~I~lwdpktg~~~g~~l~----- 197 (480)
T KOG0271|consen 129 RLVTGSGDTTVRLWDL--DTETPLFTCKGHKNWVLCVAWSP----DGKKIASGSKDGSIRLWDPKTGQQIGRALR----- 197 (480)
T ss_pred eEEecCCCceEEeecc--CCCCcceeecCCccEEEEEEECC----CcchhhccccCCeEEEecCCCCCccccccc-----
Confidence 5677777777776653 33345567899999999999999 799999999999 99999999887654 33
Q ss_pred CcccceeEEEeee---cCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEE
Q 017553 81 DKEESFYTVSWAC---NVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN 157 (369)
Q Consensus 81 ~~~~~v~~~~~~~---~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd 157 (369)
.|...|.+++|.+ .|.++ +|++++.||.|+|||+..++++..+.+|+.+|+|++|- +..+|++|+.|++|++|+
T Consensus 198 gH~K~It~Lawep~hl~p~~r-~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwG--G~gliySgS~DrtIkvw~ 274 (480)
T KOG0271|consen 198 GHKKWITALAWEPLHLVPPCR-RLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWG--GEGLIYSGSQDRTIKVWR 274 (480)
T ss_pred CcccceeEEeecccccCCCcc-ceecccCCCCEEEEEccCceEEEEeccCccceEEEEEc--CCceEEecCCCceEEEEE
Confidence 6899999999984 35666 89999999999999999999999999999999999996 357999999999999999
Q ss_pred ccCCcEEEEeeccCCCCCcEEEEEecC-----------------------------------CCceEEEEEeeCCcEEEE
Q 017553 158 VQTGICILIFAGAGGHRNEVLSVDFHP-----------------------------------SDIYRIASCGMDNTVKIW 202 (369)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-----------------------------------~~~~~l~~~~~d~~v~i~ 202 (369)
...|.+.+.++ +|...|+.++.+. +++..+++|+.|.++.+|
T Consensus 275 a~dG~~~r~lk---GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW 351 (480)
T KOG0271|consen 275 ALDGKLCRELK---GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLW 351 (480)
T ss_pred ccchhHHHhhc---ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEe
Confidence 99999999999 8999999998872 123469999999999999
Q ss_pred EccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccc
Q 017553 203 SMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTAD 280 (369)
Q Consensus 203 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 280 (369)
+.... ..|+..+.+|...|..+.|+ +.++++++.|..|++||.++++
T Consensus 352 ~p~~~----------------------kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk--------- 400 (480)
T KOG0271|consen 352 NPFKS----------------------KKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGK--------- 400 (480)
T ss_pred ccccc----------------------ccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcc---------
Confidence 98762 45777889999999999998 7799999999999999999998
Q ss_pred eeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCe
Q 017553 281 ILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGA 360 (369)
Q Consensus 281 ~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 360 (369)
.+..+.+|-..|..++|+.|.+ +|++|+.|.++++||+++. +....++ +|...|.++.|+|||+.+++|+.|..
T Consensus 401 ~lasfRGHv~~VYqvawsaDsR--LlVS~SkDsTLKvw~V~tk--Kl~~DLp--Gh~DEVf~vDwspDG~rV~sggkdkv 474 (480)
T KOG0271|consen 401 FLASFRGHVAAVYQVAWSADSR--LLVSGSKDSTLKVWDVRTK--KLKQDLP--GHADEVFAVDWSPDGQRVASGGKDKV 474 (480)
T ss_pred hhhhhhhccceeEEEEeccCcc--EEEEcCCCceEEEEEeeee--eecccCC--CCCceEEEEEecCCCceeecCCCceE
Confidence 6889999999999999999996 9999999999999999998 4556666 99999999999999999999999999
Q ss_pred EEEEe
Q 017553 361 IWRWD 365 (369)
Q Consensus 361 i~vw~ 365 (369)
+++|.
T Consensus 475 ~~lw~ 479 (480)
T KOG0271|consen 475 LRLWR 479 (480)
T ss_pred EEeec
Confidence 99995
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=9.7e-51 Score=316.09 Aligned_cols=284 Identities=19% Similarity=0.300 Sum_probs=261.2
Q ss_pred ccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCC
Q 017553 30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING 108 (369)
Q Consensus 30 ~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg 108 (369)
-+-+.+|..+.|++ +++.||||+-++ ++||+..+...+..+. .|...+.++.|.+-.++. .+++++.||
T Consensus 172 ~gd~rPis~~~fS~----ds~~laT~swsG~~kvW~~~~~~~~~~l~-----gH~~~v~~~~fhP~~~~~-~lat~s~Dg 241 (459)
T KOG0272|consen 172 VGDTRPISGCSFSR----DSKHLATGSWSGLVKVWSVPQCNLLQTLR-----GHTSRVGAAVFHPVDSDL-NLATASADG 241 (459)
T ss_pred ccCCCcceeeEeec----CCCeEEEeecCCceeEeecCCcceeEEEe-----ccccceeeEEEccCCCcc-ceeeeccCC
Confidence 46789999999999 689999999999 9999999998888888 588899999998332244 799999999
Q ss_pred eEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCce
Q 017553 109 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY 188 (369)
Q Consensus 109 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 188 (369)
++++|++.+..++..+.+|...|..++|+| ++++|+|++.|.+-++||++++..+.... ||...|.+++|+| +|.
T Consensus 242 tvklw~~~~e~~l~~l~gH~~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~ElL~QE---GHs~~v~~iaf~~-DGS 316 (459)
T KOG0272|consen 242 TVKLWKLSQETPLQDLEGHLARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSELLLQE---GHSKGVFSIAFQP-DGS 316 (459)
T ss_pred ceeeeccCCCcchhhhhcchhhheeeeecC-CCceeeecccccchhhcccccchhhHhhc---ccccccceeEecC-CCc
Confidence 999999999999999999999999999999 99999999999999999999998887777 8999999999999 999
Q ss_pred EEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEEEec
Q 017553 189 RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWE 266 (369)
Q Consensus 189 ~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d 266 (369)
++++|+.|..-+|||+|+ ...+..+.+|..+|.+++|+ |-.+++|+.|++++|||
T Consensus 317 L~~tGGlD~~~RvWDlRt-----------------------gr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWD 373 (459)
T KOG0272|consen 317 LAATGGLDSLGRVWDLRT-----------------------GRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWD 373 (459)
T ss_pred eeeccCccchhheeeccc-----------------------CcEEEEecccccceeeEeECCCceEEeecCCCCcEEEee
Confidence 999999999999999999 55688899999999999998 77999999999999999
Q ss_pred CCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEec
Q 017553 267 PKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMS 346 (369)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s 346 (369)
++... .+..++.|..-|+.+.|+|... .+|++++.|+++++|...+. .+++.+. +|.+.|.++.++
T Consensus 374 LR~r~---------~ly~ipAH~nlVS~Vk~~p~~g-~fL~TasyD~t~kiWs~~~~--~~~ksLa--GHe~kV~s~Dis 439 (459)
T KOG0272|consen 374 LRMRS---------ELYTIPAHSNLVSQVKYSPQEG-YFLVTASYDNTVKIWSTRTW--SPLKSLA--GHEGKVISLDIS 439 (459)
T ss_pred ecccc---------cceecccccchhhheEecccCC-eEEEEcccCcceeeecCCCc--ccchhhc--CCccceEEEEec
Confidence 99877 6889999999999999999444 59999999999999999888 4667777 999999999999
Q ss_pred CCCCEEEEeecCCeEEEEe
Q 017553 347 YDGSTILSCCEDGAIWRWD 365 (369)
Q Consensus 347 ~~~~~l~s~~~dg~i~vw~ 365 (369)
+|+++++|++.|.++++|.
T Consensus 440 ~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 440 PDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cCCceEEEeccCceeeecc
Confidence 9999999999999999995
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.5e-48 Score=289.00 Aligned_cols=292 Identities=20% Similarity=0.343 Sum_probs=257.9
Q ss_pred cccceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCC
Q 017553 19 KKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDG 97 (369)
Q Consensus 19 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g 97 (369)
.+..++..++|++|.+.|+++.|++ +.+++++++.|+ +.|||..+......++. ...-|..++++ |.|
T Consensus 41 ~~i~~~~rr~LkGH~~Ki~~~~ws~----Dsr~ivSaSqDGklIvWDs~TtnK~haipl-----~s~WVMtCA~s--PSg 109 (343)
T KOG0286|consen 41 GRIQMRTRRTLKGHLNKIYAMDWST----DSRRIVSASQDGKLIVWDSFTTNKVHAIPL-----PSSWVMTCAYS--PSG 109 (343)
T ss_pred eeeeeeeEEEecccccceeeeEecC----CcCeEEeeccCCeEEEEEcccccceeEEec-----CceeEEEEEEC--CCC
Confidence 4566788899999999999999999 689999999999 99999988887777662 34455555555 999
Q ss_pred ccEEEEeecCCeEEEEEcCCc------cccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccC
Q 017553 98 IPFLVAGGINGIIRVIDVSNE------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAG 171 (369)
Q Consensus 98 ~~~l~~~~~dg~i~vwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 171 (369)
+ ++++|+.|+...||++.+. +..+.+.+|++.+.|+.|.+ ...|++++.|.+..+||+++++.+..+.
T Consensus 110 ~-~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d--D~~ilT~SGD~TCalWDie~g~~~~~f~--- 183 (343)
T KOG0286|consen 110 N-FVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD--DNHILTGSGDMTCALWDIETGQQTQVFH--- 183 (343)
T ss_pred C-eEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC--CCceEecCCCceEEEEEcccceEEEEec---
Confidence 9 9999999999999999855 34577889999999999987 4679999999999999999999999999
Q ss_pred CCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--
Q 017553 172 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-- 249 (369)
Q Consensus 172 ~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-- 249 (369)
+|.+.|.++.++|.+++.+++|+-|+..++||+|. ...++.+.+|...|.++.|.
T Consensus 184 GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~-----------------------~~c~qtF~ghesDINsv~ffP~ 240 (343)
T KOG0286|consen 184 GHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS-----------------------GQCVQTFEGHESDINSVRFFPS 240 (343)
T ss_pred CCcccEEEEecCCCCCCeEEecccccceeeeeccC-----------------------cceeEeecccccccceEEEccC
Confidence 89999999999998899999999999999999999 45678899999999999996
Q ss_pred CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeecc--CCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCcee
Q 017553 250 GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP--VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVL 327 (369)
Q Consensus 250 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 327 (369)
|.-+++|+.|++.++||++..++ +..+. ....+|++++||..|+ +|.+|..|..+.+||.-.+ ..
T Consensus 241 G~afatGSDD~tcRlyDlRaD~~---------~a~ys~~~~~~gitSv~FS~SGR--lLfagy~d~~c~vWDtlk~--e~ 307 (343)
T KOG0286|consen 241 GDAFATGSDDATCRLYDLRADQE---------LAVYSHDSIICGITSVAFSKSGR--LLFAGYDDFTCNVWDTLKG--ER 307 (343)
T ss_pred CCeeeecCCCceeEEEeecCCcE---------EeeeccCcccCCceeEEEccccc--EEEeeecCCceeEeecccc--ce
Confidence 88999999999999999998763 33333 3347899999999997 8999999999999999888 45
Q ss_pred EEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEe
Q 017553 328 IARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 365 (369)
Q Consensus 328 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~ 365 (369)
+..+. +|.+.|+++..+|||..++||+.|..++||.
T Consensus 308 vg~L~--GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 308 VGVLA--GHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EEEee--ccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 66666 9999999999999999999999999999995
No 5
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.7e-46 Score=275.15 Aligned_cols=296 Identities=21% Similarity=0.312 Sum_probs=243.2
Q ss_pred ceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCC-----ceeEEEeeeccCCcccceeEEEeeecC
Q 017553 22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEG-----GVIAALQSYVDEDKEESFYTVSWACNV 95 (369)
Q Consensus 22 ~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~ 95 (369)
...+..++++|++.|+.++..+. +.+.+.+++.|. +.+|++... ...+.+. .|+..|..+..+ +
T Consensus 4 ~l~l~~tl~gh~d~Vt~la~~~~---~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~-----GHsH~v~dv~~s--~ 73 (315)
T KOG0279|consen 4 QLVLRGTLEGHTDWVTALAIKIK---NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLT-----GHSHFVSDVVLS--S 73 (315)
T ss_pred hheeeeeecCCCceEEEEEeecC---CCceEEEcccceEEEEEEeccCccccCceeeeee-----ccceEecceEEc--c
Confidence 34567788999999999999985 368999999999 999998643 3344444 578889999888 9
Q ss_pred CCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCC
Q 017553 96 DGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRN 175 (369)
Q Consensus 96 ~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 175 (369)
||+ +.++++.|+++++||+.+++..+.|.+|...|.+++|+| ++..+++|+.|.+|++|+...+ +..++... .+.+
T Consensus 74 dg~-~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~-ck~t~~~~-~~~~ 149 (315)
T KOG0279|consen 74 DGN-FALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGV-CKYTIHED-SHRE 149 (315)
T ss_pred CCc-eEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeeccc-EEEEEecC-CCcC
Confidence 999 999999999999999999999999999999999999999 8999999999999999998754 44444421 2378
Q ss_pred cEEEEEecCCC-ceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcE
Q 017553 176 EVLSVDFHPSD-IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDF 252 (369)
Q Consensus 176 ~v~~~~~~~~~-~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~ 252 (369)
.|.|++|+|.. ..+|++++.|++|++||+++ ......+.+|+..++.+.++ |..
T Consensus 150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~-----------------------~~l~~~~~gh~~~v~t~~vSpDGsl 206 (315)
T KOG0279|consen 150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRN-----------------------CQLRTTFIGHSGYVNTVTVSPDGSL 206 (315)
T ss_pred cEEEEEEcCCCCCcEEEEccCCceEEEEccCC-----------------------cchhhccccccccEEEEEECCCCCE
Confidence 99999999942 78899999999999999999 34456778899999999997 889
Q ss_pred EEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEee
Q 017553 253 ILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLS 332 (369)
Q Consensus 253 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 332 (369)
.++|+.||.+.+||++..+ .+..+. +...|.+++|+|+.- .|+ ...+..|+|||+.++.......+.
T Consensus 207 casGgkdg~~~LwdL~~~k---------~lysl~-a~~~v~sl~fspnry--wL~-~at~~sIkIwdl~~~~~v~~l~~d 273 (315)
T KOG0279|consen 207 CASGGKDGEAMLWDLNEGK---------NLYSLE-AFDIVNSLCFSPNRY--WLC-AATATSIKIWDLESKAVVEELKLD 273 (315)
T ss_pred EecCCCCceEEEEEccCCc---------eeEecc-CCCeEeeEEecCCce--eEe-eccCCceEEEeccchhhhhhcccc
Confidence 9999999999999999887 344443 457899999999973 444 444456999999998544333333
Q ss_pred cCCC-----ccceEEEEecCCCCEEEEeecCCeEEEEecC
Q 017553 333 HAQS-----KSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 333 ~~~~-----~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 367 (369)
..+. .....+++|++||+.|++|-.|+.|++|.+.
T Consensus 274 ~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 274 GIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 2222 2345789999999999999999999999975
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5.3e-47 Score=295.30 Aligned_cols=254 Identities=25% Similarity=0.401 Sum_probs=235.7
Q ss_pred cccccceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecC
Q 017553 17 PSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNV 95 (369)
Q Consensus 17 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 95 (369)
.|..+......+|.+|.+.|.++.|+|.+ ++.-+|||+.|+ +++|++.+...+..+. .|...|..++|. |
T Consensus 201 vW~~~~~~~~~~l~gH~~~v~~~~fhP~~--~~~~lat~s~Dgtvklw~~~~e~~l~~l~-----gH~~RVs~VafH--P 271 (459)
T KOG0272|consen 201 VWSVPQCNLLQTLRGHTSRVGAAVFHPVD--SDLNLATASADGTVKLWKLSQETPLQDLE-----GHLARVSRVAFH--P 271 (459)
T ss_pred EeecCCcceeEEEeccccceeeEEEccCC--CccceeeeccCCceeeeccCCCcchhhhh-----cchhhheeeeec--C
Confidence 34455667888899999999999999963 367899999999 9999998888887777 577888888888 9
Q ss_pred CCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCC
Q 017553 96 DGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRN 175 (369)
Q Consensus 96 ~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 175 (369)
+|+ +|++++.|.+-++||+.++..+....||...|.+++|.| ++.++++|+.|..-+|||+++|+++..+. +|..
T Consensus 272 sG~-~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlRtgr~im~L~---gH~k 346 (459)
T KOG0272|consen 272 SGK-FLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQP-DGSLAATGGLDSLGRVWDLRTGRCIMFLA---GHIK 346 (459)
T ss_pred CCc-eeeecccccchhhcccccchhhHhhcccccccceeEecC-CCceeeccCccchhheeecccCcEEEEec---cccc
Confidence 999 999999999999999999999999999999999999999 99999999999999999999999999999 8999
Q ss_pred cEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee---CcE
Q 017553 176 EVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDF 252 (369)
Q Consensus 176 ~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~ 252 (369)
+|.+++|+| +|..++||+.|++++|||++. ...+..+.+|.+.|+.+.|+ |.+
T Consensus 347 ~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~-----------------------r~~ly~ipAH~nlVS~Vk~~p~~g~f 402 (459)
T KOG0272|consen 347 EILSVAFSP-NGYHLATGSSDNTCKVWDLRM-----------------------RSELYTIPAHSNLVSQVKYSPQEGYF 402 (459)
T ss_pred ceeeEeECC-CceEEeecCCCCcEEEeeecc-----------------------cccceecccccchhhheEecccCCeE
Confidence 999999999 999999999999999999998 55688999999999999997 779
Q ss_pred EEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEE
Q 017553 253 ILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE 319 (369)
Q Consensus 253 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d 319 (369)
|++++.|+++++|..++.. ++..+.+|+..|.++.++++++ ++++++.|.++++|.
T Consensus 403 L~TasyD~t~kiWs~~~~~---------~~ksLaGHe~kV~s~Dis~d~~--~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 403 LVTASYDNTVKIWSTRTWS---------PLKSLAGHEGKVISLDISPDSQ--AIATSSFDRTIKLWR 458 (459)
T ss_pred EEEcccCcceeeecCCCcc---------cchhhcCCccceEEEEeccCCc--eEEEeccCceeeecc
Confidence 9999999999999999877 7999999999999999999997 999999999999995
No 7
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.5e-44 Score=264.15 Aligned_cols=298 Identities=17% Similarity=0.261 Sum_probs=244.4
Q ss_pred eeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEE
Q 017553 24 RVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLV 102 (369)
Q Consensus 24 ~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~ 102 (369)
...+.+++|.+.|..++|+|. .|.+||+|+.|+ |+||+...+.. -.........|+..|+.++|+ |.|+ +|+
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~---~g~ilAscg~Dk~vriw~~~~~~s-~~ck~vld~~hkrsVRsvAws--p~g~-~La 77 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPG---KGVILASCGTDKAVRIWSTSSGDS-WTCKTVLDDGHKRSVRSVAWS--PHGR-YLA 77 (312)
T ss_pred eeEEeecCCCCcEEEEEeccC---CceEEEeecCCceEEEEecCCCCc-EEEEEeccccchheeeeeeec--CCCc-EEE
Confidence 456678999999999999992 156999999999 99999775333 344445555899999999999 9999 999
Q ss_pred EeecCCeEEEEEcCCc--cccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEE
Q 017553 103 AGGINGIIRVIDVSNE--KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSV 180 (369)
Q Consensus 103 ~~~~dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~ 180 (369)
+|+.|.++.||.-..+ +++.++.+|...|.+++|++ ++++||++++|.+|.||.+..+........++.|...|..+
T Consensus 78 ~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V 156 (312)
T KOG0645|consen 78 SASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHV 156 (312)
T ss_pred EeeccceEEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEE
Confidence 9999999999986544 67899999999999999999 99999999999999999998665544444444899999999
Q ss_pred EecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeec
Q 017553 181 DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV 258 (369)
Q Consensus 181 ~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~ 258 (369)
.|+| ...+|++++.|.+|++|+-.... .-..+.++.+|.+.|.+++|+ |..|++++.
T Consensus 157 ~WHP-t~dlL~S~SYDnTIk~~~~~~dd--------------------dW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd 215 (312)
T KOG0645|consen 157 IWHP-TEDLLFSCSYDNTIKVYRDEDDD--------------------DWECVQTLDGHENTVWSLAFDNIGSRLVSCSD 215 (312)
T ss_pred EEcC-CcceeEEeccCCeEEEEeecCCC--------------------CeeEEEEecCccceEEEEEecCCCceEEEecC
Confidence 9999 88999999999999999877311 123567889999999999998 889999999
Q ss_pred CCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEe---ecCC
Q 017553 259 DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARL---SHAQ 335 (369)
Q Consensus 259 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~ 335 (369)
|++++||...+.- ...|...+..++|. ++ .|++++.|+.|++|.-..........+ ....
T Consensus 216 D~tv~Iw~~~~~~-------------~~~~sr~~Y~v~W~-~~---~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~a 278 (312)
T KOG0645|consen 216 DGTVSIWRLYTDL-------------SGMHSRALYDVPWD-NG---VIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGA 278 (312)
T ss_pred CcceEeeeeccCc-------------chhcccceEeeeec-cc---ceEeccCCCEEEEEEecCCCCCchHHHHHhhhcc
Confidence 9999999965321 11245678888998 55 899999999999998775321121111 1346
Q ss_pred CccceEEEEecCC-CCEEEEeecCCeEEEEecC
Q 017553 336 SKSPIRQTAMSYD-GSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 336 ~~~~v~~~~~s~~-~~~l~s~~~dg~i~vw~~~ 367 (369)
|...|++++|.|. ..+|++|+.||.|++|.+.
T Consensus 279 He~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 279 HEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred cccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 7789999999995 6799999999999999875
No 8
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.6e-43 Score=279.61 Aligned_cols=289 Identities=21% Similarity=0.354 Sum_probs=251.0
Q ss_pred cCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeE----EEee-----eccCCcccceeEEEeeecCCCccE
Q 017553 31 EGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIA----ALQS-----YVDEDKEESFYTVSWACNVDGIPF 100 (369)
Q Consensus 31 ~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~----~~~~-----~~~~~~~~~v~~~~~~~~~~g~~~ 100 (369)
.|+.+|.+.+|+|.. ..++|+++.+. .++|++....... .++. .........|++++|+ .+|. +
T Consensus 176 ~~~~~V~~~~WnP~~---~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn--~~G~-~ 249 (524)
T KOG0273|consen 176 RHESEVFICAWNPLR---DGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWN--NDGT-L 249 (524)
T ss_pred cCCCceEEEecCchh---hhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEec--CCCC-e
Confidence 399999999999953 45899999888 9999987511111 1110 0112345789999999 8999 9
Q ss_pred EEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEE
Q 017553 101 LVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSV 180 (369)
Q Consensus 101 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~ 180 (369)
||+|+.||.+++|+ .+|.++.++..|.++|.++.|+. .+++|++++.|+++.+||..+++..+.+. -|..+-..+
T Consensus 250 LatG~~~G~~riw~-~~G~l~~tl~~HkgPI~slKWnk-~G~yilS~~vD~ttilwd~~~g~~~q~f~---~~s~~~lDV 324 (524)
T KOG0273|consen 250 LATGSEDGEARIWN-KDGNLISTLGQHKGPIFSLKWNK-KGTYILSGGVDGTTILWDAHTGTVKQQFE---FHSAPALDV 324 (524)
T ss_pred EEEeecCcEEEEEe-cCchhhhhhhccCCceEEEEEcC-CCCEEEeccCCccEEEEeccCceEEEeee---eccCCccce
Confidence 99999999999999 57888999999999999999999 89999999999999999999999988888 588887889
Q ss_pred EecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeec
Q 017553 181 DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV 258 (369)
Q Consensus 181 ~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~ 258 (369)
.|- +...|++++.|+.|+++.+.. ..|+.++.+|.+.|.++.|+ +.+|++++.
T Consensus 325 dW~--~~~~F~ts~td~~i~V~kv~~-----------------------~~P~~t~~GH~g~V~alk~n~tg~LLaS~Sd 379 (524)
T KOG0273|consen 325 DWQ--SNDEFATSSTDGCIHVCKVGE-----------------------DRPVKTFIGHHGEVNALKWNPTGSLLASCSD 379 (524)
T ss_pred EEe--cCceEeecCCCceEEEEEecC-----------------------CCcceeeecccCceEEEEECCCCceEEEecC
Confidence 997 567799999999999999988 67889999999999999999 889999999
Q ss_pred CCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCC-------ccEEEEecCCCeEEEEEccCCCceeEEEe
Q 017553 259 DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFH-------YNAAAIGNREGKIFVWELQSSPPVLIARL 331 (369)
Q Consensus 259 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 331 (369)
|++++||...... ....+..|...|..+.|+|.+. ...+++++.|++|++||+..+ +++..+
T Consensus 380 D~TlkiWs~~~~~---------~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g--v~i~~f 448 (524)
T KOG0273|consen 380 DGTLKIWSMGQSN---------SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG--VPIHTL 448 (524)
T ss_pred CCeeEeeecCCCc---------chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC--ceeEee
Confidence 9999999987765 6788889999999999999875 357899999999999999999 566667
Q ss_pred ecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 332 SHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 332 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
. .|..+|.+++|+|+|+|+|+|+.||.|.+|++.+
T Consensus 449 ~--kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~ 483 (524)
T KOG0273|consen 449 M--KHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKT 483 (524)
T ss_pred c--cCCCceEEEEecCCCcEEEecCCCCeeEeccccc
Confidence 6 8889999999999999999999999999999864
No 9
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3.5e-43 Score=255.90 Aligned_cols=275 Identities=16% Similarity=0.273 Sum_probs=234.1
Q ss_pred ccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCcc--ccceee
Q 017553 49 FNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK--LHKSFV 125 (369)
Q Consensus 49 ~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~--~~~~~~ 125 (369)
.-+|++++.|. |++|...+|.+..+++ ..+..|+.+.+. |+++ .|++++. ..||+||+++++ ++.++.
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rTiq-----h~dsqVNrLeiT--pdk~-~LAaa~~-qhvRlyD~~S~np~Pv~t~e 80 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRTIQ-----HPDSQVNRLEIT--PDKK-DLAAAGN-QHVRLYDLNSNNPNPVATFE 80 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEEEe-----cCccceeeEEEc--CCcc-hhhhccC-CeeEEEEccCCCCCceeEEe
Confidence 46899999999 9999999999999998 467789999988 9998 7887775 579999998875 589999
Q ss_pred ccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEcc
Q 017553 126 GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMK 205 (369)
Q Consensus 126 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~ 205 (369)
+|++.|+++.|.. +++.+++|++||+++|||++...+.+.++ |..+|+++..+| +...|++|..+|.|++||+.
T Consensus 81 ~h~kNVtaVgF~~-dgrWMyTgseDgt~kIWdlR~~~~qR~~~----~~spVn~vvlhp-nQteLis~dqsg~irvWDl~ 154 (311)
T KOG0315|consen 81 GHTKNVTAVGFQC-DGRWMYTGSEDGTVKIWDLRSLSCQRNYQ----HNSPVNTVVLHP-NQTELISGDQSGNIRVWDLG 154 (311)
T ss_pred ccCCceEEEEEee-cCeEEEecCCCceEEEEeccCcccchhcc----CCCCcceEEecC-CcceEEeecCCCcEEEEEcc
Confidence 9999999999999 99999999999999999999987777776 889999999999 88889999999999999999
Q ss_pred CceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeee--eCcEEEEeecCCeEEEecCCCCCCCCCCCccceee
Q 017553 206 EFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW--LGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQ 283 (369)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 283 (369)
...... ..++.....|.++.. +|.+++.+...|..++|++-+... .....++.
T Consensus 155 ~~~c~~----------------------~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~---~s~l~P~~ 209 (311)
T KOG0315|consen 155 ENSCTH----------------------ELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQT---ASELEPVH 209 (311)
T ss_pred CCcccc----------------------ccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCc---cccceEhh
Confidence 831110 111122234444443 499999999999999999987442 23445778
Q ss_pred eccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEE
Q 017553 284 KYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWR 363 (369)
Q Consensus 284 ~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~v 363 (369)
+++.|...+..+.+||+++ +|++++.|.+++||+.++. .+....+. +|...+..++||.||+||+||+.|+.+++
T Consensus 210 k~~ah~~~il~C~lSPd~k--~lat~ssdktv~iwn~~~~-~kle~~l~--gh~rWvWdc~FS~dg~YlvTassd~~~rl 284 (311)
T KOG0315|consen 210 KFQAHNGHILRCLLSPDVK--YLATCSSDKTVKIWNTDDF-FKLELVLT--GHQRWVWDCAFSADGEYLVTASSDHTARL 284 (311)
T ss_pred heecccceEEEEEECCCCc--EEEeecCCceEEEEecCCc-eeeEEEee--cCCceEEeeeeccCccEEEecCCCCceee
Confidence 8999999999999999997 9999999999999999987 45555566 88899999999999999999999999999
Q ss_pred EecCC
Q 017553 364 WDAIP 368 (369)
Q Consensus 364 w~~~~ 368 (369)
|+++.
T Consensus 285 W~~~~ 289 (311)
T KOG0315|consen 285 WDLSA 289 (311)
T ss_pred ccccc
Confidence 99864
No 10
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.4e-43 Score=269.67 Aligned_cols=298 Identities=19% Similarity=0.308 Sum_probs=258.5
Q ss_pred cccccceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecC
Q 017553 17 PSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNV 95 (369)
Q Consensus 17 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 95 (369)
|+...+|++.+.+++|.+.|.|+++.| ..++|++|+.|+ ++|||+.+++....+. .|...|..++++ +
T Consensus 135 PeWHapwKl~rVi~gHlgWVr~vavdP----~n~wf~tgs~DrtikIwDlatg~Lkltlt-----Ghi~~vr~vavS--~ 203 (460)
T KOG0285|consen 135 PEWHAPWKLYRVISGHLGWVRSVAVDP----GNEWFATGSADRTIKIWDLATGQLKLTLT-----GHIETVRGVAVS--K 203 (460)
T ss_pred ccccCcceehhhhhhccceEEEEeeCC----CceeEEecCCCceeEEEEcccCeEEEeec-----chhheeeeeeec--c
Confidence 344578999999999999999999999 568999999999 9999999999988888 467788889987 6
Q ss_pred CCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCC
Q 017553 96 DGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRN 175 (369)
Q Consensus 96 ~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 175 (369)
.-. +|++++.|+.|+.||++..+.++.+.+|-..|.|++.+| .-..|++|+.|.++++||+++...+..+. +|..
T Consensus 204 rHp-YlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhP-Tldvl~t~grDst~RvWDiRtr~~V~~l~---GH~~ 278 (460)
T KOG0285|consen 204 RHP-YLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRTRASVHVLS---GHTN 278 (460)
T ss_pred cCc-eEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccc-cceeEEecCCcceEEEeeecccceEEEec---CCCC
Confidence 665 999999999999999999999999999999999999999 78899999999999999999999999999 8999
Q ss_pred cEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeeeC--cEE
Q 017553 176 EVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLG--DFI 253 (369)
Q Consensus 176 ~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l 253 (369)
+|..+.+.| -...+++|+.|++|++||++. ......+..|...+.+++.++ ..+
T Consensus 279 ~V~~V~~~~-~dpqvit~S~D~tvrlWDl~a-----------------------gkt~~tlt~hkksvral~lhP~e~~f 334 (460)
T KOG0285|consen 279 PVASVMCQP-TDPQVITGSHDSTVRLWDLRA-----------------------GKTMITLTHHKKSVRALCLHPKENLF 334 (460)
T ss_pred cceeEEeec-CCCceEEecCCceEEEeeecc-----------------------CceeEeeecccceeeEEecCCchhhh
Confidence 999999998 555699999999999999999 445677888999999999883 456
Q ss_pred EEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEE-Eee
Q 017553 254 LSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA-RLS 332 (369)
Q Consensus 254 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~ 332 (369)
++++.| .|+-|++..+. .+..+..|..-+++++...|+ ++++|+++|.+.+||.+++...... ...
T Consensus 335 ASas~d-nik~w~~p~g~---------f~~nlsgh~~iintl~~nsD~---v~~~G~dng~~~fwdwksg~nyQ~~~t~v 401 (460)
T KOG0285|consen 335 ASASPD-NIKQWKLPEGE---------FLQNLSGHNAIINTLSVNSDG---VLVSGGDNGSIMFWDWKSGHNYQRGQTIV 401 (460)
T ss_pred hccCCc-cceeccCCccc---------hhhccccccceeeeeeeccCc---eEEEcCCceEEEEEecCcCcccccccccc
Confidence 666555 69999999887 567788899999999999988 8999999999999999987432211 111
Q ss_pred cC---CCccceEEEEecCCCCEEEEeecCCeEEEEecC
Q 017553 333 HA---QSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 333 ~~---~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 367 (369)
.. ..+..|.+.+|...|..|++|..|.+|++|.-.
T Consensus 402 qpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 402 QPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred cCCccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 11 234679999999999999999999999999743
No 11
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=4.5e-42 Score=275.07 Aligned_cols=338 Identities=17% Similarity=0.228 Sum_probs=262.9
Q ss_pred cccccccccccccccccccceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCC
Q 017553 3 RTAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDED 81 (369)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~ 81 (369)
|.+++.++....+. +-+|||+..+++.|..-|+|+.|+| ||.+||+++.|+ +.+||-.+++.+..+.. ...
T Consensus 162 Ri~T~sdDn~v~ff--eGPPFKFk~s~r~HskFV~~VRysP----DG~~Fat~gsDgki~iyDGktge~vg~l~~--~~a 233 (603)
T KOG0318|consen 162 RIATGSDDNTVAFF--EGPPFKFKSSFREHSKFVNCVRYSP----DGSRFATAGSDGKIYIYDGKTGEKVGELED--SDA 233 (603)
T ss_pred EEEeccCCCeEEEe--eCCCeeeeecccccccceeeEEECC----CCCeEEEecCCccEEEEcCCCccEEEEecC--CCC
Confidence 56777777776555 4789999999999999999999999 699999999999 99999999999999986 457
Q ss_pred cccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCcccc----------------------------------------
Q 017553 82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLH---------------------------------------- 121 (369)
Q Consensus 82 ~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~---------------------------------------- 121 (369)
|.+.|++++|+ ||++ .+++++.|.+++|||+.+.+++
T Consensus 234 HkGsIfalsWs--PDs~-~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~ 310 (603)
T KOG0318|consen 234 HKGSIFALSWS--PDST-QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDP 310 (603)
T ss_pred ccccEEEEEEC--CCCc-eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCC
Confidence 99999999999 9999 9999999999999998764333
Q ss_pred ---ceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCc
Q 017553 122 ---KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNT 198 (369)
Q Consensus 122 ---~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 198 (369)
+.+.+|...|+++..+| ++..|++|+.||.|.-|+..++..-+.... +|...|.+++.+ +...+++++.|.+
T Consensus 311 ~~~~~i~GHnK~ITaLtv~~-d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~--~h~nqI~~~~~~--~~~~~~t~g~Dd~ 385 (603)
T KOG0318|consen 311 SVLKVISGHNKSITALTVSP-DGKTIYSGSYDGHINSWDSGSGTSDRLAGK--GHTNQIKGMAAS--ESGELFTIGWDDT 385 (603)
T ss_pred ChhheecccccceeEEEEcC-CCCEEEeeccCceEEEEecCCccccccccc--cccceEEEEeec--CCCcEEEEecCCe
Confidence 34457999999999999 889999999999999999998877655422 699999999987 4456889999999
Q ss_pred EEEEEccCceeeeeeeeeccCCCCCC----CC----ceeecceeeeccC--------CCceeeeeee--CcEEEEeecCC
Q 017553 199 VKIWSMKEFWTYVEKSFTWTDLPSKF----PT----KYVQFPVFIASVH--------SNYVDCNRWL--GDFILSKSVDN 260 (369)
Q Consensus 199 v~i~d~~~~~~~~~~~~~~~~~~~~~----~~----~~~~~~~~~~~~~--------~~~v~~~~~~--~~~l~~~~~d~ 260 (369)
+++.++..........+.....|... +. ......+..+..+ .-...+++.+ ++.+++|+.|+
T Consensus 386 l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dg 465 (603)
T KOG0318|consen 386 LRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDG 465 (603)
T ss_pred EEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccc
Confidence 99998865322222111111111100 00 0000011111111 1123344554 88999999999
Q ss_pred eEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccce
Q 017553 261 EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPI 340 (369)
Q Consensus 261 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v 340 (369)
.|++|.+...... .......|.+.++.+++|||+. +|+++...+.+.+||+.+.+. ....+. -|.+.|
T Consensus 466 kvhvysl~g~~l~-------ee~~~~~h~a~iT~vaySpd~~--yla~~Da~rkvv~yd~~s~~~-~~~~w~--FHtakI 533 (603)
T KOG0318|consen 466 KVHVYSLSGDELK-------EEAKLLEHRAAITDVAYSPDGA--YLAAGDASRKVVLYDVASREV-KTNRWA--FHTAKI 533 (603)
T ss_pred eEEEEEecCCccc-------ceeeeecccCCceEEEECCCCc--EEEEeccCCcEEEEEcccCce-ecceee--eeeeeE
Confidence 9999999876521 2334456778999999999997 999999999999999999864 333443 677999
Q ss_pred EEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 341 RQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 341 ~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
.+++|+|+..++|||+.|-.|.||+++.
T Consensus 534 ~~~aWsP~n~~vATGSlDt~Viiysv~k 561 (603)
T KOG0318|consen 534 NCVAWSPNNKLVATGSLDTNVIIYSVKK 561 (603)
T ss_pred EEEEeCCCceEEEeccccceEEEEEccC
Confidence 9999999999999999999999999863
No 12
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=8.7e-43 Score=260.44 Aligned_cols=292 Identities=20% Similarity=0.362 Sum_probs=251.0
Q ss_pred eeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCc-eeEEEeeeccCCcccceeEEEeeecCCCccEE
Q 017553 24 RVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG-VIAALQSYVDEDKEESFYTVSWACNVDGIPFL 101 (369)
Q Consensus 24 ~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l 101 (369)
.+...+.+|++.|+.+.|+| +|.+||++|.|+ |.+|+..... ....++ .|.+.|..+.|. +|+. .+
T Consensus 38 ap~m~l~gh~geI~~~~F~P----~gs~~aSgG~Dr~I~LWnv~gdceN~~~lk-----gHsgAVM~l~~~--~d~s-~i 105 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHP----DGSCFASGGSDRAIVLWNVYGDCENFWVLK-----GHSGAVMELHGM--RDGS-HI 105 (338)
T ss_pred chhhhcCCCcceEEEEEECC----CCCeEeecCCcceEEEEeccccccceeeec-----cccceeEeeeec--cCCC-EE
Confidence 35556789999999999999 699999999999 9999965433 333444 689999999998 9998 99
Q ss_pred EEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEE
Q 017553 102 VAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVD 181 (369)
Q Consensus 102 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~ 181 (369)
++++.|.+|+.||+++|+.++.+++|.+-|+++.-+..+..++.+++.|+++++||+++..+++++. ....++++.
T Consensus 106 ~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~----~kyqltAv~ 181 (338)
T KOG0265|consen 106 LSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE----NKYQLTAVG 181 (338)
T ss_pred EEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc----cceeEEEEE
Confidence 9999999999999999999999999999999999666566788999999999999999999988886 677899999
Q ss_pred ecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecC
Q 017553 182 FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVD 259 (369)
Q Consensus 182 ~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d 259 (369)
|.. .+..+.+|+-|+.|++||++. ......+.+|.+.|+.+..+ |.++++-+.|
T Consensus 182 f~d-~s~qv~sggIdn~ikvWd~r~-----------------------~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd 237 (338)
T KOG0265|consen 182 FKD-TSDQVISGGIDNDIKVWDLRK-----------------------NDGLYTLSGHADTITGLSLSRYGSFLLSNSMD 237 (338)
T ss_pred ecc-cccceeeccccCceeeecccc-----------------------CcceEEeecccCceeeEEeccCCCcccccccc
Confidence 997 888899999999999999998 45678899999999999987 8899999999
Q ss_pred CeEEEecCCCCCCCCCCCccceeeeccCCC----CCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCC
Q 017553 260 NEIVLWEPKMKEQSPGEGTADILQKYPVPE----CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQ 335 (369)
Q Consensus 260 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 335 (369)
.++++||++...+ ...++..+.++. .....++|+|++. .+.+|+.|..+++||.... ..+..++ +
T Consensus 238 ~tvrvwd~rp~~p-----~~R~v~if~g~~hnfeknlL~cswsp~~~--~i~ags~dr~vyvwd~~~r--~~lyklp--G 306 (338)
T KOG0265|consen 238 NTVRVWDVRPFAP-----SQRCVKIFQGHIHNFEKNLLKCSWSPNGT--KITAGSADRFVYVWDTTSR--RILYKLP--G 306 (338)
T ss_pred ceEEEEEecccCC-----CCceEEEeecchhhhhhhcceeeccCCCC--ccccccccceEEEeecccc--cEEEEcC--C
Confidence 9999999986542 112344444432 3456788999996 8999999999999998876 4667777 9
Q ss_pred CccceEEEEecCCCCEEEEeecCCeEEEEec
Q 017553 336 SKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 366 (369)
Q Consensus 336 ~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~ 366 (369)
|.+.|++++|+|...+|.+++.|.+|++=++
T Consensus 307 h~gsvn~~~Fhp~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 307 HYGSVNEVDFHPTEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred cceeEEEeeecCCCcEEEEeccCceeEeecc
Confidence 9999999999999999999999999987544
No 13
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=100.00 E-value=1.4e-42 Score=262.47 Aligned_cols=348 Identities=51% Similarity=0.943 Sum_probs=297.7
Q ss_pred ccceeeeeecc-cCCcCeEEEEEeec-cCCCccEEEEecCCcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCC-
Q 017553 20 KREYRVTNKLQ-EGKRPLYAVVFNFI-DSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD- 96 (369)
Q Consensus 20 ~~~~~~~~~~~-~h~~~v~~~~~s~~-~~~~~~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~- 96 (369)
+++|+....++ .|+.+|+.++|++- +....+.+|+.|.+.+.+|......-+..++.+.++.+++..+.++|++...
T Consensus 24 k~~yk~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~ 103 (385)
T KOG1034|consen 24 KRSYKYTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNT 103 (385)
T ss_pred ccceEeeeehhccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCC
Confidence 78899888875 78899999999952 2223578999999999999998888888999999989999999999998766
Q ss_pred CccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCc
Q 017553 97 GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNE 176 (369)
Q Consensus 97 g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 176 (369)
+.+++|+|+.-|.|+|.|+.++++...+.+|...|+.|.++|...+++++++.|.+|++|++++..++..+...++|.+.
T Consensus 104 ~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrde 183 (385)
T KOG1034|consen 104 GNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDE 183 (385)
T ss_pred CCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCc
Confidence 67799999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEEEEecCCCceEEEEEeeCCcEEEEEccC--ceeeeeeeeeccCCCCC--CCCceeeccee-eeccCCCceeeeeeeCc
Q 017553 177 VLSVDFHPSDIYRIASCGMDNTVKIWSMKE--FWTYVEKSFTWTDLPSK--FPTKYVQFPVF-IASVHSNYVDCNRWLGD 251 (369)
Q Consensus 177 v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~v~~~~~~~~ 251 (369)
|.++.|++ ++.+|++++.|.++++|++.. ....++..+.+.+.+.. ++......|.. +...|.++|.|+.|-|+
T Consensus 184 VLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd 262 (385)
T KOG1034|consen 184 VLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGD 262 (385)
T ss_pred EEEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhh
Confidence 99999999 888999999999999999994 44555555555554444 55555555554 56789999999999999
Q ss_pred EEEEeecCCeEEEecCCCCCCC-----CCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCce
Q 017553 252 FILSKSVDNEIVLWEPKMKEQS-----PGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPV 326 (369)
Q Consensus 252 ~l~~~~~d~~i~i~d~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 326 (369)
++++-+-++.|..|..-..+.. +.......+.++..+.+.++.+.|+-|....+|+.|...|.|++||++..++.
T Consensus 263 ~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~ 342 (385)
T KOG1034|consen 263 FILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPP 342 (385)
T ss_pred heeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCc
Confidence 9999999999999998322221 33344556788888899999999988876679999999999999999998876
Q ss_pred eEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 327 LIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 327 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
...++.+......|...+|+.||.+|+..++|+.|.-||..+
T Consensus 343 ~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv~ 384 (385)
T KOG1034|consen 343 KCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRVS 384 (385)
T ss_pred cCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEeec
Confidence 666666666678899999999999999999999999998643
No 14
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.9e-43 Score=268.27 Aligned_cols=292 Identities=19% Similarity=0.328 Sum_probs=260.8
Q ss_pred ccceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCc
Q 017553 20 KREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGI 98 (369)
Q Consensus 20 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~ 98 (369)
.++..+.+.+.+|..+|+.+-|+| +-.+++++++|. |++||..+++....+++ |...+..++|. ..|+
T Consensus 95 ipRp~l~~~l~g~r~~vt~v~~hp----~~~~v~~as~d~tikv~D~~tg~~e~~LrG-----Ht~sv~di~~~--a~Gk 163 (406)
T KOG0295|consen 95 IPRPNLVQKLAGHRSSVTRVIFHP----SEALVVSASEDATIKVFDTETGELERSLRG-----HTDSVFDISFD--ASGK 163 (406)
T ss_pred CCCCCchhhhhccccceeeeeecc----CceEEEEecCCceEEEEEccchhhhhhhhc-----cccceeEEEEe--cCcc
Confidence 345566677889999999999999 568889998998 99999999999888884 66778888888 8898
Q ss_pred cEEEEeecCCeEEEEEcCC-ccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcE
Q 017553 99 PFLVAGGINGIIRVIDVSN-EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEV 177 (369)
Q Consensus 99 ~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v 177 (369)
+|++++.|-.+++||..+ .++++.+.+|...|.+++|-| .+.++++++.|.+|+.|++.+|.++.++. +|...|
T Consensus 164 -~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P-~gd~ilS~srD~tik~We~~tg~cv~t~~---~h~ewv 238 (406)
T KOG0295|consen 164 -YLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLP-LGDHILSCSRDNTIKAWECDTGYCVKTFP---GHSEWV 238 (406)
T ss_pred -EEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEe-cCCeeeecccccceeEEecccceeEEecc---CchHhE
Confidence 999999998899999877 567888999999999999999 78999999999999999999999999999 899999
Q ss_pred EEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--------
Q 017553 178 LSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-------- 249 (369)
Q Consensus 178 ~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-------- 249 (369)
..++.+. ++.++++++.|.+|++|-+.+. .....+..|+.+|-|++|-
T Consensus 239 r~v~v~~-DGti~As~s~dqtl~vW~~~t~-----------------------~~k~~lR~hEh~vEci~wap~~~~~~i 294 (406)
T KOG0295|consen 239 RMVRVNQ-DGTIIASCSNDQTLRVWVVATK-----------------------QCKAELREHEHPVECIAWAPESSYPSI 294 (406)
T ss_pred EEEEecC-CeeEEEecCCCceEEEEEeccc-----------------------hhhhhhhccccceEEEEecccccCcch
Confidence 9999997 9999999999999999999883 3344566777778877772
Q ss_pred ----C-----cEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEc
Q 017553 250 ----G-----DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL 320 (369)
Q Consensus 250 ----~-----~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~ 320 (369)
+ .++.+++.|++|++||+.++. ++.++.+|...|..++|+|.|+ +|+++.+|+++++||+
T Consensus 295 ~~at~~~~~~~~l~s~SrDktIk~wdv~tg~---------cL~tL~ghdnwVr~~af~p~Gk--yi~ScaDDktlrvwdl 363 (406)
T KOG0295|consen 295 SEATGSTNGGQVLGSGSRDKTIKIWDVSTGM---------CLFTLVGHDNWVRGVAFSPGGK--YILSCADDKTLRVWDL 363 (406)
T ss_pred hhccCCCCCccEEEeecccceEEEEeccCCe---------EEEEEecccceeeeeEEcCCCe--EEEEEecCCcEEEEEe
Confidence 2 489999999999999999987 8999999999999999999997 9999999999999999
Q ss_pred cCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEec
Q 017553 321 QSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 366 (369)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~ 366 (369)
++. .....++ .|..-|+++.|+.+..+++||+-|..+++|.-
T Consensus 364 ~~~--~cmk~~~--ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 364 KNL--QCMKTLE--AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ccc--eeeeccC--CCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 998 4556666 77789999999999999999999999999974
No 15
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.8e-44 Score=280.12 Aligned_cols=281 Identities=20% Similarity=0.310 Sum_probs=245.1
Q ss_pred CCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeE
Q 017553 32 GKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGII 110 (369)
Q Consensus 32 h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i 110 (369)
-..+|+.|.|.| +|+.|++|+..+ +.+|+...-.-...++ .|...|.++.|+ ++|. ++++|+.+|.|
T Consensus 95 vkc~V~~v~WtP----eGRRLltgs~SGEFtLWNg~~fnFEtilQ-----aHDs~Vr~m~ws--~~g~-wmiSgD~gG~i 162 (464)
T KOG0284|consen 95 VKCPVNVVRWTP----EGRRLLTGSQSGEFTLWNGTSFNFETILQ-----AHDSPVRTMKWS--HNGT-WMISGDKGGMI 162 (464)
T ss_pred cccceeeEEEcC----CCceeEeecccccEEEecCceeeHHHHhh-----hhcccceeEEEc--cCCC-EEEEcCCCceE
Confidence 456799999999 689999999988 9999963322222233 799999999999 8898 99999999999
Q ss_pred EEEEcCCccccceeeccc-cceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceE
Q 017553 111 RVIDVSNEKLHKSFVGHG-DSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYR 189 (369)
Q Consensus 111 ~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 189 (369)
++|+.+ ...++.+.+|. ..|++++|+| +...|++++.||+|+|||....+....+. +|.-.|.+++|+| ...+
T Consensus 163 KyWqpn-mnnVk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~---GHgwdVksvdWHP-~kgL 236 (464)
T KOG0284|consen 163 KYWQPN-MNNVKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLR---GHGWDVKSVDWHP-TKGL 236 (464)
T ss_pred Eecccc-hhhhHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhheec---cCCCCcceeccCC-ccce
Confidence 999965 44455565554 8999999999 77899999999999999999888878887 8999999999999 8889
Q ss_pred EEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEEEecC
Q 017553 190 IASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEP 267 (369)
Q Consensus 190 l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~ 267 (369)
+++++.|..|++||.++ ...+.++..|.+.|..+.|+ +++|++++.|..+++||+
T Consensus 237 iasgskDnlVKlWDprS-----------------------g~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~Di 293 (464)
T KOG0284|consen 237 IASGSKDNLVKLWDPRS-----------------------GSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDI 293 (464)
T ss_pred eEEccCCceeEeecCCC-----------------------cchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEeh
Confidence 99999999999999999 55788889999999999997 889999999999999999
Q ss_pred CCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecC
Q 017553 268 KMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSY 347 (369)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 347 (369)
++.+ .+..+++|+..++++.|+|-.+ .+|.+|+.||.|..|.+...++ +..+. .+|...|.+++|+|
T Consensus 294 R~mk---------El~~~r~Hkkdv~~~~WhP~~~-~lftsgg~Dgsvvh~~v~~~~p--~~~i~-~AHd~~iwsl~~hP 360 (464)
T KOG0284|consen 294 RTMK---------ELFTYRGHKKDVTSLTWHPLNE-SLFTSGGSDGSVVHWVVGLEEP--LGEIP-PAHDGEIWSLAYHP 360 (464)
T ss_pred hHhH---------HHHHhhcchhhheeeccccccc-cceeeccCCCceEEEecccccc--ccCCC-cccccceeeeeccc
Confidence 9766 6889999999999999999887 5999999999999999985533 22222 37889999999999
Q ss_pred CCCEEEEeecCCeEEEEec
Q 017553 348 DGSTILSCCEDGAIWRWDA 366 (369)
Q Consensus 348 ~~~~l~s~~~dg~i~vw~~ 366 (369)
=|.+|++|+.|.++++|.-
T Consensus 361 lGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 361 LGHILATGSNDRTVRFWTR 379 (464)
T ss_pred cceeEeecCCCcceeeecc
Confidence 9999999999999999964
No 16
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.4e-42 Score=251.49 Aligned_cols=284 Identities=20% Similarity=0.350 Sum_probs=240.6
Q ss_pred eEEEEEeeccCCCccEEEEe--------cCCcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecC
Q 017553 36 LYAVVFNFIDSRYFNVFATV--------GGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN 107 (369)
Q Consensus 36 v~~~~~s~~~~~~~~~la~~--------~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~d 107 (369)
=+++.|||-- .++||.+ |.+++.|.++.....+.....+ ..++.++.++|+.+.+ ..+++++.|
T Consensus 11 GysvqfSPf~---~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~---d~~D~LfdV~Wse~~e--~~~~~a~GD 82 (311)
T KOG0277|consen 11 GYSVQFSPFV---ENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSY---DTEDGLFDVAWSENHE--NQVIAASGD 82 (311)
T ss_pred cceeEecccc---cchhheeehhhcccccCceEEEEecCCCCCeEEEEee---ecccceeEeeecCCCc--ceEEEEecC
Confidence 3789999953 3444443 2333999998767777777766 4678999999995544 468999999
Q ss_pred CeEEEEEcCC-ccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCC
Q 017553 108 GIIRVIDVSN-EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSD 186 (369)
Q Consensus 108 g~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 186 (369)
|.+++||+.. ..+++.++.|..+|.++.|++.....+++++.|++|++|+...++.++++. +|...|+...|+|..
T Consensus 83 GSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~---gh~~~Iy~a~~sp~~ 159 (311)
T KOG0277|consen 83 GSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFN---GHNSCIYQAAFSPHI 159 (311)
T ss_pred ceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeec---CCccEEEEEecCCCC
Confidence 9999999643 357899999999999999999888899999999999999999999999988 899999999999999
Q ss_pred ceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee---CcEEEEeecCCeEE
Q 017553 187 IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIV 263 (369)
Q Consensus 187 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~ 263 (369)
++++++++.|+++++||++.. . ....+..|...+.|+.|+ ...+++|+.|+.|+
T Consensus 160 ~nlfas~Sgd~~l~lwdvr~~----------------------g-k~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr 216 (311)
T KOG0277|consen 160 PNLFASASGDGTLRLWDVRSP----------------------G-KFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVR 216 (311)
T ss_pred CCeEEEccCCceEEEEEecCC----------------------C-ceeEEEeccceeEeecccccCCcEEEecCCCceEE
Confidence 999999999999999999983 1 233478899999999997 77999999999999
Q ss_pred EecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEE
Q 017553 264 LWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQT 343 (369)
Q Consensus 264 i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~ 343 (369)
.||+++.+. ++..+.+|.-.|..++|||... .+|++++.|-+++|||...+. -.+.+.. .|..-+..+
T Consensus 217 ~wDir~~r~--------pl~eL~gh~~AVRkvk~Sph~~-~lLaSasYDmT~riw~~~~~d-s~~e~~~--~HtEFv~g~ 284 (311)
T KOG0277|consen 217 GWDIRNLRT--------PLFELNGHGLAVRKVKFSPHHA-SLLASASYDMTVRIWDPERQD-SAIETVD--HHTEFVCGL 284 (311)
T ss_pred EEehhhccc--------cceeecCCceEEEEEecCcchh-hHhhhccccceEEecccccch-hhhhhhh--ccceEEecc
Confidence 999998774 6788889999999999999887 699999999999999998654 2333333 667889999
Q ss_pred EecC-CCCEEEEeecCCeEEEEe
Q 017553 344 AMSY-DGSTILSCCEDGAIWRWD 365 (369)
Q Consensus 344 ~~s~-~~~~l~s~~~dg~i~vw~ 365 (369)
.||+ ++.++|+++.|+.++||+
T Consensus 285 Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 285 DWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred ccccccCceeeecccccceeeec
Confidence 9997 567999999999999998
No 17
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.8e-41 Score=266.95 Aligned_cols=277 Identities=20% Similarity=0.383 Sum_probs=249.0
Q ss_pred CcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEE
Q 017553 33 KRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIR 111 (369)
Q Consensus 33 ~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~ 111 (369)
+..|++++|+. +|.+||+|+.++ ++||+ .+|..+..+. .|+++|.++.|. .+|. +|++++.|+++.
T Consensus 235 nkdVT~L~Wn~----~G~~LatG~~~G~~riw~-~~G~l~~tl~-----~HkgPI~slKWn--k~G~-yilS~~vD~tti 301 (524)
T KOG0273|consen 235 NKDVTSLDWNN----DGTLLATGSEDGEARIWN-KDGNLISTLG-----QHKGPIFSLKWN--KKGT-YILSGGVDGTTI 301 (524)
T ss_pred cCCcceEEecC----CCCeEEEeecCcEEEEEe-cCchhhhhhh-----ccCCceEEEEEc--CCCC-EEEeccCCccEE
Confidence 35799999998 699999999999 99999 6777777776 689999999999 8898 999999999999
Q ss_pred EEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEE
Q 017553 112 VIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIA 191 (369)
Q Consensus 112 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 191 (369)
+||..+++..+.+.-|..+-.++.|-. ...+++++.|+.|+|+.+....++.++. +|.++|.++.|+| .+.+|+
T Consensus 302 lwd~~~g~~~q~f~~~s~~~lDVdW~~--~~~F~ts~td~~i~V~kv~~~~P~~t~~---GH~g~V~alk~n~-tg~LLa 375 (524)
T KOG0273|consen 302 LWDAHTGTVKQQFEFHSAPALDVDWQS--NDEFATSSTDGCIHVCKVGEDRPVKTFI---GHHGEVNALKWNP-TGSLLA 375 (524)
T ss_pred EEeccCceEEEeeeeccCCccceEEec--CceEeecCCCceEEEEEecCCCcceeee---cccCceEEEEECC-CCceEE
Confidence 999999999999998988878899974 5679999999999999999999999999 8999999999999 999999
Q ss_pred EEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee-----------CcEEEEeecCC
Q 017553 192 SCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-----------GDFILSKSVDN 260 (369)
Q Consensus 192 ~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----------~~~l~~~~~d~ 260 (369)
+++.|++++||.+.. ......+..|...|..+.|+ +..+++++.|+
T Consensus 376 S~SdD~TlkiWs~~~-----------------------~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~ds 432 (524)
T KOG0273|consen 376 SCSDDGTLKIWSMGQ-----------------------SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDS 432 (524)
T ss_pred EecCCCeeEeeecCC-----------------------CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCC
Confidence 999999999999877 34566778888888888885 34899999999
Q ss_pred eEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccce
Q 017553 261 EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPI 340 (369)
Q Consensus 261 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v 340 (369)
+|++||+..+. ++..+..|..+|.+++|+|+++ ++|+|+.||.|.+|+.+++ +..+.+. ..+.|
T Consensus 433 tV~lwdv~~gv---------~i~~f~kH~~pVysvafS~~g~--ylAsGs~dg~V~iws~~~~--~l~~s~~---~~~~I 496 (524)
T KOG0273|consen 433 TVKLWDVESGV---------PIHTLMKHQEPVYSVAFSPNGR--YLASGSLDGCVHIWSTKTG--KLVKSYQ---GTGGI 496 (524)
T ss_pred eEEEEEccCCc---------eeEeeccCCCceEEEEecCCCc--EEEecCCCCeeEeccccch--heeEeec---CCCeE
Confidence 99999999887 7888999999999999999997 9999999999999999998 4555554 33679
Q ss_pred EEEEecCCCCEEEEeecCCeEEEEecC
Q 017553 341 RQTAMSYDGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 341 ~~~~~s~~~~~l~s~~~dg~i~vw~~~ 367 (369)
..++|+.+|.+|..+-.||.+++-|+.
T Consensus 497 fel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 497 FELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred EEEEEcCCCCEEEEEecCCCceEEEec
Confidence 999999999999999999999999875
No 18
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.2e-40 Score=255.43 Aligned_cols=309 Identities=17% Similarity=0.219 Sum_probs=249.8
Q ss_pred eeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEE
Q 017553 25 VTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVA 103 (369)
Q Consensus 25 ~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~ 103 (369)
-..+|..|+++|++++.+| +.+++|||++|. -.||+..++.....+. .|+..|.++.|+ .+|. +||+
T Consensus 56 S~~tF~~H~~svFavsl~P----~~~l~aTGGgDD~AflW~~~~ge~~~elt-----gHKDSVt~~~Fs--hdgt-lLAT 123 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHP----NNNLVATGGGDDLAFLWDISTGEFAGELT-----GHKDSVTCCSFS--HDGT-LLAT 123 (399)
T ss_pred ceeehhhcCCceEEEEeCC----CCceEEecCCCceEEEEEccCCcceeEec-----CCCCceEEEEEc--cCce-EEEe
Confidence 3457889999999999999 579999999888 9999999999777777 688999999988 8899 9999
Q ss_pred eecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEec
Q 017553 104 GGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFH 183 (369)
Q Consensus 104 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 183 (369)
|..+|.|+||+..++.....+...-..|.-+.|+| ...+|++|+.||.+.+|.+.++...+.+. +|+.++++-.|.
T Consensus 124 GdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~~~~kv~~---Gh~~~ct~G~f~ 199 (399)
T KOG0296|consen 124 GDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQALCKVMS---GHNSPCTCGEFI 199 (399)
T ss_pred cCCCccEEEEEcccCceEEEeecccCceEEEEecc-cccEEEeecCCCcEEEEECCCcceeeEec---CCCCCccccccc
Confidence 99999999999999988888876667889999999 89999999999999999999887777777 899999999999
Q ss_pred CCCceEEEEEeeCCcEEEEEccCceeeeeeee------eccCCCCCCC--------------Cceeecceee--------
Q 017553 184 PSDIYRIASCGMDNTVKIWSMKEFWTYVEKSF------TWTDLPSKFP--------------TKYVQFPVFI-------- 235 (369)
Q Consensus 184 ~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~------~~~~~~~~~~--------------~~~~~~~~~~-------- 235 (369)
| +|+.++++..||+|++|+..+++....... .+........ .....+.+..
T Consensus 200 p-dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l 278 (399)
T KOG0296|consen 200 P-DGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPEL 278 (399)
T ss_pred C-CCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccc
Confidence 9 899999999999999999999765544431 1111000000 0000011111
Q ss_pred eccCCCceeeeee---e--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEec
Q 017553 236 ASVHSNYVDCNRW---L--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN 310 (369)
Q Consensus 236 ~~~~~~~v~~~~~---~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~ 310 (369)
...+...+.|+.+ + =.+.++|+.||+|.|||+.... ++..-.|...|..+.|-+.. +|++++
T Consensus 279 ~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~----------~R~~c~he~~V~~l~w~~t~---~l~t~c 345 (399)
T KOG0296|consen 279 KPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST----------LRHICEHEDGVTKLKWLNTD---YLLTAC 345 (399)
T ss_pred cccchhhhhhhhhcccccccchhhcccccceEEEEecccch----------hheeccCCCceEEEEEcCcc---hheeec
Confidence 1123333444444 3 2378899999999999998764 55556677889999999933 899999
Q ss_pred CCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecC
Q 017553 311 REGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 311 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 367 (369)
.+|.|+.||.+++ ++...+. +|..+|.+++++|+.++++|+|.|+..+||++.
T Consensus 346 ~~g~v~~wDaRtG--~l~~~y~--GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 346 ANGKVRQWDARTG--QLKFTYT--GHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred cCceEEeeecccc--ceEEEEe--cCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999999999999 4555555 999999999999999999999999999999875
No 19
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.3e-39 Score=267.65 Aligned_cols=284 Identities=27% Similarity=0.446 Sum_probs=243.3
Q ss_pred eecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEee
Q 017553 27 NKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG 105 (369)
Q Consensus 27 ~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~ 105 (369)
+++++|.++|++++|+| ++++|++++.++ +.+|++.+++....+. .|...+..+.|. ++++ ++++++
T Consensus 3 ~~~~~h~~~i~~~~~~~----~~~~l~~~~~~g~i~i~~~~~~~~~~~~~-----~~~~~i~~~~~~--~~~~-~l~~~~ 70 (289)
T cd00200 3 RTLKGHTGGVTCVAFSP----DGKLLATGSGDGTIKVWDLETGELLRTLK-----GHTGPVRDVAAS--ADGT-YLASGS 70 (289)
T ss_pred hHhcccCCCEEEEEEcC----CCCEEEEeecCcEEEEEEeeCCCcEEEEe-----cCCcceeEEEEC--CCCC-EEEEEc
Confidence 45789999999999999 589999999777 9999998887666655 466677778887 8887 899999
Q ss_pred cCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCC
Q 017553 106 INGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS 185 (369)
Q Consensus 106 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 185 (369)
.+|.|++|++.+++.+..+..|...|.++.|+| ++.++++++.|+.|++||+++++....+. .|...+.+++|+|
T Consensus 71 ~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~i~~~~~~~- 145 (289)
T cd00200 71 SDKTIRLWDLETGECVRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKCLTTLR---GHTDWVNSVAFSP- 145 (289)
T ss_pred CCCeEEEEEcCcccceEEEeccCCcEEEEEEcC-CCCEEEEecCCCeEEEEECCCcEEEEEec---cCCCcEEEEEEcC-
Confidence 999999999998888888999999999999999 67888888889999999999888888887 6999999999999
Q ss_pred CceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEE
Q 017553 186 DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIV 263 (369)
Q Consensus 186 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~ 263 (369)
++.++++++.|+.|++||++.+ .....+..|...+.++.|+ ++.+++++.++.++
T Consensus 146 ~~~~l~~~~~~~~i~i~d~~~~-----------------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 202 (289)
T cd00200 146 DGTFVASSSQDGTIKLWDLRTG-----------------------KCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIK 202 (289)
T ss_pred cCCEEEEEcCCCcEEEEEcccc-----------------------ccceeEecCccccceEEECCCcCEEEEecCCCcEE
Confidence 7888888888999999999862 3445556788899999998 44888989999999
Q ss_pred EecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEE
Q 017553 264 LWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQT 343 (369)
Q Consensus 264 i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~ 343 (369)
+||++..+ .+..+..+...+.++.|+|++. ++++++.+|.|++||+.++ .....+. .|...|.++
T Consensus 203 i~d~~~~~---------~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~i~~~~~~--~~~~~~~--~~~~~i~~~ 267 (289)
T cd00200 203 LWDLSTGK---------CLGTLRGHENGVNSVAFSPDGY--LLASGSEDGTIRVWDLRTG--ECVQTLS--GHTNSVTSL 267 (289)
T ss_pred EEECCCCc---------eecchhhcCCceEEEEEcCCCc--EEEEEcCCCcEEEEEcCCc--eeEEEcc--ccCCcEEEE
Confidence 99998765 4555656777899999999964 7888888999999999886 3445555 677899999
Q ss_pred EecCCCCEEEEeecCCeEEEEe
Q 017553 344 AMSYDGSTILSCCEDGAIWRWD 365 (369)
Q Consensus 344 ~~s~~~~~l~s~~~dg~i~vw~ 365 (369)
+|+|++++|++++.||.|++|+
T Consensus 268 ~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 268 AWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EECCCCCEEEEecCCCeEEecC
Confidence 9999999999999999999996
No 20
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5.8e-42 Score=287.18 Aligned_cols=278 Identities=22% Similarity=0.366 Sum_probs=239.8
Q ss_pred eeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEE
Q 017553 25 VTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVA 103 (369)
Q Consensus 25 ~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~ 103 (369)
+..++..-...++|..|++ ++.++|.|-.|. |++|.+... .++.++. ..+- . .+=+
T Consensus 370 c~YT~~nt~~~v~ca~fSd----dssmlA~Gf~dS~i~~~Sl~p~-kl~~lk~------------~~~l-----~-~~d~ 426 (707)
T KOG0263|consen 370 CMYTFHNTYQGVTCAEFSD----DSSMLACGFVDSSVRVWSLTPK-KLKKLKD------------ASDL-----S-NIDT 426 (707)
T ss_pred EEEEEEEcCCcceeEeecC----CcchhhccccccEEEEEecchh-hhccccc------------hhhh-----c-cccc
Confidence 3344444556799999999 578999998888 999997644 3334332 1111 1 2333
Q ss_pred eecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEec
Q 017553 104 GGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFH 183 (369)
Q Consensus 104 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 183 (369)
.+.|-.+.+.|..+.....++.+|.++|....|+| +.++|+++++|++||+|.+.+..++..++ +|..+|.++.|+
T Consensus 427 ~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~---GH~~PVwdV~F~ 502 (707)
T KOG0263|consen 427 ESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYK---GHLAPVWDVQFA 502 (707)
T ss_pred cccchhhhhccccCCceeEEeecCCCceeeeeecc-cccceeeccCCcceeeeecccceeEEEec---CCCcceeeEEec
Confidence 45555577788777777888999999999999999 89999999999999999999999999998 899999999999
Q ss_pred CCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCe
Q 017553 184 PSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNE 261 (369)
Q Consensus 184 ~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~ 261 (369)
| .|.+|+|++.|++.++|.... ..|.+.+.+|.+.|.|+.|. ..++++|+.|.+
T Consensus 503 P-~GyYFatas~D~tArLWs~d~-----------------------~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~t 558 (707)
T KOG0263|consen 503 P-RGYYFATASHDQTARLWSTDH-----------------------NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRT 558 (707)
T ss_pred C-CceEEEecCCCceeeeeeccc-----------------------CCchhhhcccccccceEEECCcccccccCCCCce
Confidence 9 899999999999999999988 56888999999999999997 669999999999
Q ss_pred EEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceE
Q 017553 262 IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIR 341 (369)
Q Consensus 262 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~ 341 (369)
+|+||..++. .++.+.+|..+|.+++|||+|+ +|++|+.||.|.+||+.+++ .+..+. +|.+.|.
T Consensus 559 VRlWDv~~G~---------~VRiF~GH~~~V~al~~Sp~Gr--~LaSg~ed~~I~iWDl~~~~--~v~~l~--~Ht~ti~ 623 (707)
T KOG0263|consen 559 VRLWDVSTGN---------SVRIFTGHKGPVTALAFSPCGR--YLASGDEDGLIKIWDLANGS--LVKQLK--GHTGTIY 623 (707)
T ss_pred EEEEEcCCCc---------EEEEecCCCCceEEEEEcCCCc--eEeecccCCcEEEEEcCCCc--chhhhh--cccCcee
Confidence 9999999987 7899999999999999999997 99999999999999999984 555565 8889999
Q ss_pred EEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 342 QTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 342 ~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
++.|+.||..||+|+.|..|++||+..
T Consensus 624 SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 624 SLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred EEEEecCCCEEEecCCCCeEEEEEchh
Confidence 999999999999999999999999853
No 21
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=7.9e-40 Score=301.02 Aligned_cols=298 Identities=20% Similarity=0.312 Sum_probs=240.4
Q ss_pred cccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCC----ceeE-EEeeeccCCcccceeEEEeeecCCCccEEE
Q 017553 29 LQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEG----GVIA-ALQSYVDEDKEESFYTVSWACNVDGIPFLV 102 (369)
Q Consensus 29 ~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~----~~~~-~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~ 102 (369)
+..|.+.|++++|+| +|++||+|+.|+ |+||+.... .... ..... .+...+.+++|. +....+|+
T Consensus 479 ~~~~~~~V~~i~fs~----dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~---~~~~~v~~l~~~--~~~~~~la 549 (793)
T PLN00181 479 LLNSSNLVCAIGFDR----DGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL---ASRSKLSGICWN--SYIKSQVA 549 (793)
T ss_pred ccCCCCcEEEEEECC----CCCEEEEEeCCCEEEEEECCcccccccccccceEEe---cccCceeeEEec--cCCCCEEE
Confidence 345899999999999 689999999998 999997532 1100 00011 234578888887 54333899
Q ss_pred EeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEe
Q 017553 103 AGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDF 182 (369)
Q Consensus 103 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~ 182 (369)
+++.||+|++||+.+++.+..+.+|.+.|++++|+|.++.+|++|+.|+.|++||++++..+..+. +...+.++.|
T Consensus 550 s~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~----~~~~v~~v~~ 625 (793)
T PLN00181 550 SSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK----TKANICCVQF 625 (793)
T ss_pred EEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe----cCCCeEEEEE
Confidence 999999999999999999999999999999999998678899999999999999999999888886 4468999999
Q ss_pred cCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee-CcEEEEeecCCe
Q 017553 183 HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNE 261 (369)
Q Consensus 183 ~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~ 261 (369)
++.++.+|++|+.|+.|++||++... .+...+.+|...|.++.|. +.++++++.|+.
T Consensus 626 ~~~~g~~latgs~dg~I~iwD~~~~~----------------------~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ 683 (793)
T PLN00181 626 PSESGRSLAFGSADHKVYYYDLRNPK----------------------LPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNT 683 (793)
T ss_pred eCCCCCEEEEEeCCCeEEEEECCCCC----------------------ccceEecCCCCCEEEEEEeCCCEEEEEECCCE
Confidence 76578999999999999999998721 2345667899999999996 789999999999
Q ss_pred EEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEee---------
Q 017553 262 IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLS--------- 332 (369)
Q Consensus 262 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--------- 332 (369)
|++||++...... ....+..+..|...+..++|+++++ +|++|+.|+.|++|+.....+.....+.
T Consensus 684 ikiWd~~~~~~~~---~~~~l~~~~gh~~~i~~v~~s~~~~--~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~ 758 (793)
T PLN00181 684 LKLWDLSMSISGI---NETPLHSFMGHTNVKNFVGLSVSDG--YIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLE 758 (793)
T ss_pred EEEEeCCCCcccc---CCcceEEEcCCCCCeeEEEEcCCCC--EEEEEeCCCEEEEEECCCCCceEEEecccCCcccccc
Confidence 9999997542110 1125677888888899999999986 9999999999999998765433222221
Q ss_pred cCCCccceEEEEecCCCCEEEEeecCCeEEEEec
Q 017553 333 HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 366 (369)
Q Consensus 333 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~ 366 (369)
...+...|.+++|+|++.+|++|+.||.|+||++
T Consensus 759 ~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 759 VDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred cCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 1234567999999999999999999999999997
No 22
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.6e-41 Score=273.81 Aligned_cols=287 Identities=22% Similarity=0.377 Sum_probs=249.7
Q ss_pred eeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEE
Q 017553 23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL 101 (369)
Q Consensus 23 ~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l 101 (369)
++..+++..|+..|.++.|+|. ...+.++--++ |.|||..+...++.+. ..+.+|++..|. +.-+ ++
T Consensus 3 l~~krk~~~rSdRVKsVd~HPt----ePw~la~LynG~V~IWnyetqtmVksfe-----V~~~PvRa~kfi--aRkn-Wi 70 (794)
T KOG0276|consen 3 LDFKRKFQSRSDRVKSVDFHPT----EPWILAALYNGDVQIWNYETQTMVKSFE-----VSEVPVRAAKFI--ARKN-WI 70 (794)
T ss_pred chhhhHhhccCCceeeeecCCC----CceEEEeeecCeeEEEecccceeeeeee-----ecccchhhheee--eccc-eE
Confidence 3455667789999999999995 34555554444 9999999998888887 467788888887 5555 99
Q ss_pred EEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCC-cEEEEeeccCCCCCcEEEE
Q 017553 102 VAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG-ICILIFAGAGGHRNEVLSV 180 (369)
Q Consensus 102 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~v~~~ 180 (369)
++|+.|..|+||+.++++.+..|.+|.+.|.+++.+| ...+++++|.|-.|++||.+.+ .+.+.+. +|...|+++
T Consensus 71 v~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHP-t~P~vLtsSDDm~iKlW~we~~wa~~qtfe---GH~HyVMqv 146 (794)
T KOG0276|consen 71 VTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHP-TLPYVLTSSDDMTIKLWDWENEWACEQTFE---GHEHYVMQV 146 (794)
T ss_pred EEecCCceEEEEecccceeeEEeeccccceeeeeecC-CCCeEEecCCccEEEEeeccCceeeeeEEc---CcceEEEEE
Confidence 9999999999999999999999999999999999999 7789999999999999999865 4566677 899999999
Q ss_pred EecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee-Cc---EEEEe
Q 017553 181 DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GD---FILSK 256 (369)
Q Consensus 181 ~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~---~l~~~ 256 (369)
+|+|.+.+.+++++.|++|++|.+.+ ..+..++.+|...|.|+.|. +. ++++|
T Consensus 147 ~fnPkD~ntFaS~sLDrTVKVWslgs-----------------------~~~nfTl~gHekGVN~Vdyy~~gdkpylIsg 203 (794)
T KOG0276|consen 147 AFNPKDPNTFASASLDRTVKVWSLGS-----------------------PHPNFTLEGHEKGVNCVDYYTGGDKPYLISG 203 (794)
T ss_pred EecCCCccceeeeeccccEEEEEcCC-----------------------CCCceeeeccccCcceEEeccCCCcceEEec
Confidence 99999999999999999999999988 56788999999999999997 33 99999
Q ss_pred ecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCC
Q 017553 257 SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQS 336 (369)
Q Consensus 257 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 336 (369)
+.|..+++||..+.. +++++.+|...|..+.|+|.-+ ++++|++||+++||+..+.+ +...+. -.
T Consensus 204 aDD~tiKvWDyQtk~---------CV~TLeGHt~Nvs~v~fhp~lp--iiisgsEDGTvriWhs~Ty~--lE~tLn--~g 268 (794)
T KOG0276|consen 204 ADDLTIKVWDYQTKS---------CVQTLEGHTNNVSFVFFHPELP--IIISGSEDGTVRIWNSKTYK--LEKTLN--YG 268 (794)
T ss_pred CCCceEEEeecchHH---------HHHHhhcccccceEEEecCCCc--EEEEecCCccEEEecCccee--hhhhhh--cC
Confidence 999999999999887 8999999999999999999986 99999999999999988874 334444 23
Q ss_pred ccceEEEEecCCCCEEEEeecCCeEEE
Q 017553 337 KSPIRQTAMSYDGSTILSCCEDGAIWR 363 (369)
Q Consensus 337 ~~~v~~~~~s~~~~~l~s~~~dg~i~v 363 (369)
...|.+++-.+.+..++.|.+.|.|.+
T Consensus 269 leRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 269 LERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred CceEEEEeecCCCCeEEEeccCCcEEE
Confidence 368999999999889999988887643
No 23
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.4e-41 Score=278.62 Aligned_cols=313 Identities=16% Similarity=0.251 Sum_probs=255.9
Q ss_pred cccceeeeeeccc-CCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCC
Q 017553 19 KKREYRVTNKLQE-GKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD 96 (369)
Q Consensus 19 ~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 96 (369)
..+.-++++..+. |++||.-++|+| .+.+||+|+.|+ ++|||+..+.....++ .|.+.|..+.|.+.+.
T Consensus 90 ~L~tgk~irswKa~He~Pvi~ma~~~----~g~LlAtggaD~~v~VWdi~~~~~th~fk-----G~gGvVssl~F~~~~~ 160 (775)
T KOG0319|consen 90 SLPTGKLIRSWKAIHEAPVITMAFDP----TGTLLATGGADGRVKVWDIKNGYCTHSFK-----GHGGVVSSLLFHPHWN 160 (775)
T ss_pred EcccchHhHhHhhccCCCeEEEEEcC----CCceEEeccccceEEEEEeeCCEEEEEec-----CCCceEEEEEeCCccc
Confidence 3444467777776 999999999999 589999999999 9999999999998888 5888999999996666
Q ss_pred CccEEEEeecCCeEEEEEcCCcc-ccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccC----
Q 017553 97 GIPFLVAGGINGIIRVIDVSNEK-LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAG---- 171 (369)
Q Consensus 97 g~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---- 171 (369)
-. +|++|..|+.+++||+.+.. ++..+..|.+.|++++|.+ ++..+++++.|..+.+||+.+.+....+...+
T Consensus 161 ~~-lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~-d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~ 238 (775)
T KOG0319|consen 161 RW-LLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSE-DSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLES 238 (775)
T ss_pred hh-heeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeecc-CCceEEEeccCcEEEEeehhhhhhhheechhhheee
Confidence 65 89999999999999998655 4888999999999999999 78889999999999999986433222211100
Q ss_pred --------------------------------------------------------------------------------
Q 017553 172 -------------------------------------------------------------------------------- 171 (369)
Q Consensus 172 -------------------------------------------------------------------------------- 171 (369)
T Consensus 239 vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ 318 (775)
T KOG0319|consen 239 VVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQ 318 (775)
T ss_pred EEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehh
Confidence
Q ss_pred --------------------------------------------CCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCc
Q 017553 172 --------------------------------------------GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEF 207 (369)
Q Consensus 172 --------------------------------------------~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~ 207 (369)
+|+..|.++.... .+.+|++|+.|.++++|.++..
T Consensus 319 ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~-~g~llat~sKD~svilWr~~~~ 397 (775)
T KOG0319|consen 319 IVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWS-SGDLLATGSKDKSVILWRLNNN 397 (775)
T ss_pred hcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecc-cCcEEEEecCCceEEEEEecCC
Confidence 7888888888443 5678899999999999988442
Q ss_pred eeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee---CcEEEEeecCCeEEEecCCCCCCCCCCCccceeee
Q 017553 208 WTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQK 284 (369)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 284 (369)
. ....++....+|.+.|.+++++ ..+|++++.|.++++|++...+..........-..
T Consensus 398 ~-------------------~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t 458 (775)
T KOG0319|consen 398 C-------------------SKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYT 458 (775)
T ss_pred c-------------------chhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHH
Confidence 1 1133566778999999999997 56999999999999999988443333222222234
Q ss_pred ccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEE
Q 017553 285 YPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRW 364 (369)
Q Consensus 285 ~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw 364 (369)
...|...|++++++|+.+ ++++|+.|.+.+||++... .....+. +|.-.|.++.|+|..+.+||+|.|++|+||
T Consensus 459 ~~aHdKdIN~Vaia~ndk--LiAT~SqDktaKiW~le~~--~l~~vLs--GH~RGvw~V~Fs~~dq~laT~SgD~TvKIW 532 (775)
T KOG0319|consen 459 ERAHDKDINCVAIAPNDK--LIATGSQDKTAKIWDLEQL--RLLGVLS--GHTRGVWCVSFSKNDQLLATCSGDKTVKIW 532 (775)
T ss_pred HHhhcccccceEecCCCc--eEEecccccceeeecccCc--eEEEEee--CCccceEEEEeccccceeEeccCCceEEEE
Confidence 567889999999999997 9999999999999999955 6777777 999999999999999999999999999999
Q ss_pred ecCC
Q 017553 365 DAIP 368 (369)
Q Consensus 365 ~~~~ 368 (369)
.+++
T Consensus 533 ~is~ 536 (775)
T KOG0319|consen 533 SIST 536 (775)
T ss_pred Eecc
Confidence 9875
No 24
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.6e-39 Score=236.91 Aligned_cols=282 Identities=13% Similarity=0.240 Sum_probs=237.0
Q ss_pred cccccceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCcEEEEEecCCce--eEEEeeeccCCcccceeEEEeeec
Q 017553 17 PSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGV--IAALQSYVDEDKEESFYTVSWACN 94 (369)
Q Consensus 17 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~ 94 (369)
-|....-++.++++...+.|+++...| ++..||+++...|++||+.++.+ +..+. .|...|.++.|.
T Consensus 24 fWqa~tG~C~rTiqh~dsqVNrLeiTp----dk~~LAaa~~qhvRlyD~~S~np~Pv~t~e-----~h~kNVtaVgF~-- 92 (311)
T KOG0315|consen 24 FWQALTGICSRTIQHPDSQVNRLEITP----DKKDLAAAGNQHVRLYDLNSNNPNPVATFE-----GHTKNVTAVGFQ-- 92 (311)
T ss_pred eeehhcCeEEEEEecCccceeeEEEcC----CcchhhhccCCeeEEEEccCCCCCceeEEe-----ccCCceEEEEEe--
Confidence 344566778888888889999999999 68999999999999999988765 44444 578899999988
Q ss_pred CCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCC
Q 017553 95 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR 174 (369)
Q Consensus 95 ~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 174 (369)
.+|+ .+++|++||+++|||++...+.+.+. |..+|+++..+| +...|++|..+|.|++||+.+..+...+.. ...
T Consensus 93 ~dgr-WMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~~~liP--e~~ 167 (311)
T KOG0315|consen 93 CDGR-WMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCTHELIP--EDD 167 (311)
T ss_pred ecCe-EEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecC-CcceEEeecCCCcEEEEEccCCccccccCC--CCC
Confidence 8899 99999999999999999866666655 789999999999 888999999999999999998877776653 455
Q ss_pred CcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcE
Q 017553 175 NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDF 252 (369)
Q Consensus 175 ~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~ 252 (369)
..|.++...| ++.+++.+...|..++|++-..+. .....|+..++.|+..+..+.++ +++
T Consensus 168 ~~i~sl~v~~-dgsml~a~nnkG~cyvW~l~~~~~-----------------~s~l~P~~k~~ah~~~il~C~lSPd~k~ 229 (311)
T KOG0315|consen 168 TSIQSLTVMP-DGSMLAAANNKGNCYVWRLLNHQT-----------------ASELEPVHKFQAHNGHILRCLLSPDVKY 229 (311)
T ss_pred cceeeEEEcC-CCcEEEEecCCccEEEEEccCCCc-----------------cccceEhhheecccceEEEEEECCCCcE
Confidence 7899999999 999999999999999999987321 12245677899999999999997 789
Q ss_pred EEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEee
Q 017553 253 ILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLS 332 (369)
Q Consensus 253 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 332 (369)
|++++.|.+++||+..+.- +.-..+..|+..++.++||.+++ +|++|+.|+.+++||+..++ .+....
T Consensus 230 lat~ssdktv~iwn~~~~~--------kle~~l~gh~rWvWdc~FS~dg~--YlvTassd~~~rlW~~~~~k--~v~qy~ 297 (311)
T KOG0315|consen 230 LATCSSDKTVKIWNTDDFF--------KLELVLTGHQRWVWDCAFSADGE--YLVTASSDHTARLWDLSAGK--EVRQYQ 297 (311)
T ss_pred EEeecCCceEEEEecCCce--------eeEEEeecCCceEEeeeeccCcc--EEEecCCCCceeecccccCc--eeeecC
Confidence 9999999999999998761 14566778888999999999997 99999999999999999994 445555
Q ss_pred cCCCccceEEEEec
Q 017553 333 HAQSKSPIRQTAMS 346 (369)
Q Consensus 333 ~~~~~~~v~~~~~s 346 (369)
+|..+..+++..
T Consensus 298 --gh~K~~vc~~ln 309 (311)
T KOG0315|consen 298 --GHHKAAVCVALN 309 (311)
T ss_pred --CcccccEEEEee
Confidence 776777676653
No 25
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=4.5e-42 Score=262.08 Aligned_cols=276 Identities=23% Similarity=0.358 Sum_probs=238.0
Q ss_pred cCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCe
Q 017553 31 EGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGI 109 (369)
Q Consensus 31 ~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~ 109 (369)
.....|+|+.+.. +.+++|..|. |+|||..+-.....+. .|.+.|.|+.+. .+ .+++|+.|.+
T Consensus 195 e~skgVYClQYDD------~kiVSGlrDnTikiWD~n~~~c~~~L~-----GHtGSVLCLqyd----~r-viisGSSDsT 258 (499)
T KOG0281|consen 195 ENSKGVYCLQYDD------EKIVSGLRDNTIKIWDKNSLECLKILT-----GHTGSVLCLQYD----ER-VIVSGSSDST 258 (499)
T ss_pred ccCCceEEEEecc------hhhhcccccCceEEeccccHHHHHhhh-----cCCCcEEeeecc----ce-EEEecCCCce
Confidence 3567799999864 7899999998 9999988888887777 588999888875 44 8999999999
Q ss_pred EEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceE
Q 017553 110 IRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYR 189 (369)
Q Consensus 110 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 189 (369)
|++||+++++++.++-+|...|..+.|+. .++++++.|.++.+||+.....+.....+.+|...|+.+.|+ .++
T Consensus 259 vrvWDv~tge~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd---~ky 332 (499)
T KOG0281|consen 259 VRVWDVNTGEPLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKY 332 (499)
T ss_pred EEEEeccCCchhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc---cce
Confidence 99999999999999999999999999965 799999999999999998765433333334899999999996 359
Q ss_pred EEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeeeCcEEEEeecCCeEEEecCCC
Q 017553 190 IASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKM 269 (369)
Q Consensus 190 l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~ 269 (369)
+++++.|.+|++|++.+ ...+..+.+|...|.|+.+.++++++|+.|.+|++||+..
T Consensus 333 IVsASgDRTikvW~~st-----------------------~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~ 389 (499)
T KOG0281|consen 333 IVSASGDRTIKVWSTST-----------------------CEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIEC 389 (499)
T ss_pred EEEecCCceEEEEeccc-----------------------eeeehhhhcccccceehhccCeEEEecCCCceEEEEeccc
Confidence 99999999999999999 4568889999999999999999999999999999999998
Q ss_pred CCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCce-------eEEEeecCCCccceEE
Q 017553 270 KEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPV-------LIARLSHAQSKSPIRQ 342 (369)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------~~~~~~~~~~~~~v~~ 342 (369)
+. +++.+.+|+.-|.++.|... .+++|..||+|++||+..+... .+..+ ..|.+.|-.
T Consensus 390 G~---------cLRvLeGHEeLvRciRFd~k----rIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~l--v~hsgRVFr 454 (499)
T KOG0281|consen 390 GA---------CLRVLEGHEELVRCIRFDNK----RIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTL--VEHSGRVFR 454 (499)
T ss_pred cH---------HHHHHhchHHhhhheeecCc----eeeeccccceEEEEecccccCCcccccchHHHhh--hhccceeEE
Confidence 87 78999999999999999654 6999999999999999876422 22222 367789999
Q ss_pred EEecCCCCEEEEeecCCeEEEEecCC
Q 017553 343 TAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 343 ~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
+.| |...+++++.|.+|.|||+.+
T Consensus 455 LQF--D~fqIvsssHddtILiWdFl~ 478 (499)
T KOG0281|consen 455 LQF--DEFQIISSSHDDTILIWDFLN 478 (499)
T ss_pred Eee--cceEEEeccCCCeEEEEEcCC
Confidence 999 566899999999999999854
No 26
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-39 Score=235.34 Aligned_cols=284 Identities=20% Similarity=0.316 Sum_probs=238.0
Q ss_pred eeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEE
Q 017553 24 RVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLV 102 (369)
Q Consensus 24 ~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~ 102 (369)
+-.+.|..|+++|.++.|+- +|++..+|+.|+ |++|+...+..+++.. .|..+|..++.+ .|+. .++
T Consensus 8 kr~~~l~~~qgaV~avryN~----dGnY~ltcGsdrtvrLWNp~rg~liktYs-----ghG~EVlD~~~s--~Dns-kf~ 75 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNV----DGNYCLTCGSDRTVRLWNPLRGALIKTYS-----GHGHEVLDAALS--SDNS-KFA 75 (307)
T ss_pred hhceeecccccceEEEEEcc----CCCEEEEcCCCceEEeecccccceeeeec-----CCCceeeecccc--cccc-ccc
Confidence 34456789999999999998 799999999999 9999999999999988 578889888887 6677 899
Q ss_pred EeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCC--cEEEEeeccCCCCCcEEEE
Q 017553 103 AGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG--ICILIFAGAGGHRNEVLSV 180 (369)
Q Consensus 103 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~v~~~ 180 (369)
+|+.|..+.+||+++|+.++.+++|.+.|+.++|+. +...+++|+.|.++++||.++. ++++.+. ...+.|.++
T Consensus 76 s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQild---ea~D~V~Si 151 (307)
T KOG0316|consen 76 SCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILD---EAKDGVSSI 151 (307)
T ss_pred cCCCCceEEEEEcccCeeeeecccccceeeEEEecC-cceEEEeccccceeEEEEcccCCCCccchhh---hhcCceeEE
Confidence 999999999999999999999999999999999999 8999999999999999999864 5677776 578899999
Q ss_pred EecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeec
Q 017553 181 DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV 258 (369)
Q Consensus 181 ~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~ 258 (369)
... +..+++|+.||+++.||+|.+.. ....-..+|+|+.|+ ++..+.++.
T Consensus 152 ~v~---~heIvaGS~DGtvRtydiR~G~l-------------------------~sDy~g~pit~vs~s~d~nc~La~~l 203 (307)
T KOG0316|consen 152 DVA---EHEIVAGSVDGTVRTYDIRKGTL-------------------------SSDYFGHPITSVSFSKDGNCSLASSL 203 (307)
T ss_pred Eec---ccEEEeeccCCcEEEEEeeccee-------------------------ehhhcCCcceeEEecCCCCEEEEeec
Confidence 986 46799999999999999998532 223345678999997 889999999
Q ss_pred CCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCcc
Q 017553 259 DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKS 338 (369)
Q Consensus 259 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 338 (369)
|+++++.|-.+++ ++..+.+|...-..+..+-......+++|++||.|++||+... ..+..+. .+..
T Consensus 204 ~stlrLlDk~tGk---------lL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~--~~~sk~~--~~~~ 270 (307)
T KOG0316|consen 204 DSTLRLLDKETGK---------LLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE--TQISKLS--VVST 270 (307)
T ss_pred cceeeecccchhH---------HHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccc--eeeeeec--cCCc
Confidence 9999999999988 7888888876555444443333358999999999999999988 4555665 4444
Q ss_pred c-eEEEEecCCCCEEEEeecCCeEEEEe
Q 017553 339 P-IRQTAMSYDGSTILSCCEDGAIWRWD 365 (369)
Q Consensus 339 ~-v~~~~~s~~~~~l~s~~~dg~i~vw~ 365 (369)
. |.++.++|.-..|+++.. +.+..|-
T Consensus 271 v~v~dl~~hp~~~~f~~A~~-~~~~~~~ 297 (307)
T KOG0316|consen 271 VIVTDLSCHPTMDDFITATG-HGDLFWY 297 (307)
T ss_pred eeEEeeecccCccceeEecC-Cceecee
Confidence 5 899999998877877764 4466664
No 27
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.1e-41 Score=270.07 Aligned_cols=296 Identities=15% Similarity=0.271 Sum_probs=245.5
Q ss_pred ceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecC-CceeEEEeeeccCCcccceeEEEeeecCCCcc
Q 017553 22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLE-GGVIAALQSYVDEDKEESFYTVSWACNVDGIP 99 (369)
Q Consensus 22 ~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~ 99 (369)
|-+..+++.+|+..|.++.|.|. .+.+|++++.|+ |+||++.. ++.++++. .|..+|..++|+ ++|.
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~---~~hLlLS~gmD~~vklW~vy~~~~~lrtf~-----gH~k~Vrd~~~s--~~g~- 271 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPK---KGHLLLSGGMDGLVKLWNVYDDRRCLRTFK-----GHRKPVRDASFN--NCGT- 271 (503)
T ss_pred cHhheeeccCCccccchhhhccc---eeeEEEecCCCceEEEEEEecCcceehhhh-----cchhhhhhhhcc--ccCC-
Confidence 44567788999999999999995 489999999999 99999886 77777777 588899999998 9999
Q ss_pred EEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEE
Q 017553 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLS 179 (369)
Q Consensus 100 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~ 179 (369)
.+++++.|+.|++||+++|+++..+. -...++|+.|+|++.+.+++|+.|+.|+.||+++++.++.+. .|-+.|..
T Consensus 272 ~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd---~hLg~i~~ 347 (503)
T KOG0282|consen 272 SFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD---RHLGAILD 347 (503)
T ss_pred eeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH---hhhhheee
Confidence 99999999999999999999999887 456789999999666999999999999999999999988888 69999999
Q ss_pred EEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeeeCcEEEEeecC
Q 017553 180 VDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVD 259 (369)
Q Consensus 180 ~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d 259 (369)
+.|-+ ++..+++.+.|+++++|+.+.+-. ...+.....|.-+...+..++.+++.-+.|
T Consensus 348 i~F~~-~g~rFissSDdks~riWe~~~~v~--------------------ik~i~~~~~hsmP~~~~~P~~~~~~aQs~d 406 (503)
T KOG0282|consen 348 ITFVD-EGRRFISSSDDKSVRIWENRIPVP--------------------IKNIADPEMHTMPCLTLHPNGKWFAAQSMD 406 (503)
T ss_pred eEEcc-CCceEeeeccCccEEEEEcCCCcc--------------------chhhcchhhccCcceecCCCCCeehhhccC
Confidence 99999 999999999999999999998321 011112223444444444448899999999
Q ss_pred CeEEEecCCCCCCCCCCCccceeeeccCCC--CCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCc
Q 017553 260 NEIVLWEPKMKEQSPGEGTADILQKYPVPE--CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSK 337 (369)
Q Consensus 260 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 337 (369)
+.|.+|.+...-+ ...-..+.+|. +.-..+.|||||+ +|++|+.||.+.+||.++. +.+..+. .|.
T Consensus 407 N~i~ifs~~~~~r------~nkkK~feGh~vaGys~~v~fSpDG~--~l~SGdsdG~v~~wdwkt~--kl~~~lk--ah~ 474 (503)
T KOG0282|consen 407 NYIAIFSTVPPFR------LNKKKRFEGHSVAGYSCQVDFSPDGR--TLCSGDSDGKVNFWDWKTT--KLVSKLK--AHD 474 (503)
T ss_pred ceEEEEecccccc------cCHhhhhcceeccCceeeEEEcCCCC--eEEeecCCccEEEeechhh--hhhhccc--cCC
Confidence 9999999765432 11233444443 3456789999997 9999999999999999998 4566666 888
Q ss_pred cceEEEEecCCC-CEEEEeecCCeEEEEe
Q 017553 338 SPIRQTAMSYDG-STILSCCEDGAIWRWD 365 (369)
Q Consensus 338 ~~v~~~~~s~~~-~~l~s~~~dg~i~vw~ 365 (369)
.++..+.|+|.. ..+|||+.||.|++|+
T Consensus 475 ~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 475 QPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cceEEEEecCCCcceeEecccCceeEecC
Confidence 999999999965 6899999999999997
No 28
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.6e-39 Score=278.85 Aligned_cols=294 Identities=22% Similarity=0.402 Sum_probs=245.0
Q ss_pred cceeeeeecccC-CcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCc--eeEEEeeeccCCcccceeEEEeeecCC
Q 017553 21 REYRVTNKLQEG-KRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG--VIAALQSYVDEDKEESFYTVSWACNVD 96 (369)
Q Consensus 21 ~~~~~~~~~~~h-~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~ 96 (369)
..+.+...+.+| ...|.++.|+| +|..+++++.++ +++|+....+ ....+ ..|...|+.++|+ |+
T Consensus 146 ~~~~~~~~~~~~~~~sv~~~~fs~----~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l-----~~h~~~v~~~~fs--~d 214 (456)
T KOG0266|consen 146 RVFSLEQTLAGHECPSVTCVDFSP----DGRALAAASSDGLIRIWKLEGIKSNLLREL-----SGHTRGVSDVAFS--PD 214 (456)
T ss_pred ccceeeeeecccccCceEEEEEcC----CCCeEEEccCCCcEEEeecccccchhhccc-----cccccceeeeEEC--CC
Confidence 344455555444 78899999999 689999999888 9999986666 33333 3688999999999 99
Q ss_pred CccEEEEeecCCeEEEEEc-CCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCC
Q 017553 97 GIPFLVAGGINGIIRVIDV-SNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRN 175 (369)
Q Consensus 97 g~~~l~~~~~dg~i~vwd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 175 (369)
|+ ++++++.|++|++||+ ..+..++++++|...|++++|+| .++++++|+.|++|++||+++++++..+. +|.+
T Consensus 215 ~~-~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~---~hs~ 289 (456)
T KOG0266|consen 215 GS-YLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLK---GHSD 289 (456)
T ss_pred Cc-EEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeee---ccCC
Confidence 99 9999999999999999 55588999999999999999999 66999999999999999999999999999 8999
Q ss_pred cEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCC--ceeeeeee--Cc
Q 017553 176 EVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN--YVDCNRWL--GD 251 (369)
Q Consensus 176 ~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~--~~ 251 (369)
.|++++|++ ++++|++++.|+.|++||+.++... ....+..+.. .++++.|+ +.
T Consensus 290 ~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~~~~~---------------------~~~~~~~~~~~~~~~~~~fsp~~~ 347 (456)
T KOG0266|consen 290 GISGLAFSP-DGNLLVSASYDGTIRVWDLETGSKL---------------------CLKLLSGAENSAPVTSVQFSPNGK 347 (456)
T ss_pred ceEEEEECC-CCCEEEEcCCCccEEEEECCCCcee---------------------eeecccCCCCCCceeEEEECCCCc
Confidence 999999999 9999999999999999999995321 1233333433 48888887 88
Q ss_pred EEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCC---eeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeE
Q 017553 252 FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECD---IWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLI 328 (369)
Q Consensus 252 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 328 (369)
++++++.|+.+++||++... .+..+..|... +.+...++.+. ++++|+.|+.|++||+.++ ..+
T Consensus 348 ~ll~~~~d~~~~~w~l~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~--~i~sg~~d~~v~~~~~~s~--~~~ 414 (456)
T KOG0266|consen 348 YLLSASLDRTLKLWDLRSGK---------SVGTYTGHSNLVRCIFSPTLSTGGK--LIYSGSEDGSVYVWDSSSG--GIL 414 (456)
T ss_pred EEEEecCCCeEEEEEccCCc---------ceeeecccCCcceeEecccccCCCC--eEEEEeCCceEEEEeCCcc--chh
Confidence 99999999999999999876 45555555543 33344456665 9999999999999999987 445
Q ss_pred EEeecCCC-ccceEEEEecCCCCEEEEee--cCCeEEEEecC
Q 017553 329 ARLSHAQS-KSPIRQTAMSYDGSTILSCC--EDGAIWRWDAI 367 (369)
Q Consensus 329 ~~~~~~~~-~~~v~~~~~s~~~~~l~s~~--~dg~i~vw~~~ 367 (369)
..+. +| ...+..+.++|..+++++++ .|+.+++|..+
T Consensus 415 ~~l~--~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 415 QRLE--GHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred hhhc--CCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 5555 67 78999999999999999998 78999999865
No 29
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.7e-38 Score=254.59 Aligned_cols=348 Identities=18% Similarity=0.230 Sum_probs=271.9
Q ss_pred ccccccccccccccccccceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc---EEEEEecCCceeEEEeeeccC
Q 017553 4 TAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR---VTVYQCLEGGVIAALQSYVDE 80 (369)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~---v~iw~~~~~~~~~~~~~~~~~ 80 (369)
+|.|......++.........++..++.-.++|..++|++ +++++++.++++ .+++-..+|..+..+.
T Consensus 74 iASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~----ds~RI~avGEGrerfg~~F~~DSG~SvGei~----- 144 (603)
T KOG0318|consen 74 IASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDF----DSKRIAAVGEGRERFGHVFLWDSGNSVGEIT----- 144 (603)
T ss_pred EeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCC----CCcEEEEEecCccceeEEEEecCCCccceee-----
Confidence 3556666666677766677778888899999999999999 578888877665 4455555788888888
Q ss_pred CcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccC
Q 017553 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 160 (369)
Q Consensus 81 ~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 160 (369)
.|...|++++|. |.....+++|+.|+.|.+|+=.--+...+++.|..-|.|+.|+| ++..+++++.||.|.+||-.+
T Consensus 145 GhSr~ins~~~K--psRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysP-DG~~Fat~gsDgki~iyDGkt 221 (603)
T KOG0318|consen 145 GHSRRINSVDFK--PSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSP-DGSRFATAGSDGKIYIYDGKT 221 (603)
T ss_pred ccceeEeeeecc--CCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECC-CCCeEEEecCCccEEEEcCCC
Confidence 588899999998 55555799999999999999666677788889999999999999 899999999999999999999
Q ss_pred CcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeecc-----------CC-------CC
Q 017553 161 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWT-----------DL-------PS 222 (369)
Q Consensus 161 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~-----------~~-------~~ 222 (369)
|+.+..+....+|.+.|.++.|+| ++..+++++.|.+++|||+.+........+... .. ..
T Consensus 222 ge~vg~l~~~~aHkGsIfalsWsP-Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G 300 (603)
T KOG0318|consen 222 GEKVGELEDSDAHKGSIFALSWSP-DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSG 300 (603)
T ss_pred ccEEEEecCCCCccccEEEEEECC-CCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCc
Confidence 999999987778999999999999 899999999999999999988644333222111 00 00
Q ss_pred --CCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCC--Cccceee-------------
Q 017553 223 --KFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGE--GTADILQ------------- 283 (369)
Q Consensus 223 --~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~~~------------- 283 (369)
.+-......++..+.+|...|+++..+ +++|++|+.||.|.-|+..++...+.. .+...+.
T Consensus 301 ~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~ 380 (603)
T KOG0318|consen 301 TINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTI 380 (603)
T ss_pred EEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEE
Confidence 000111123677889999999999997 789999999999999999876543210 0000000
Q ss_pred -------------------------------------------------eccC--------CCCCeeEEEEeecCCccEE
Q 017553 284 -------------------------------------------------KYPV--------PECDIWFIKFSCDFHYNAA 306 (369)
Q Consensus 284 -------------------------------------------------~~~~--------~~~~i~~~~~s~~~~~~~l 306 (369)
.++. ..-...+++++|++. .+
T Consensus 381 g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~--~v 458 (603)
T KOG0318|consen 381 GWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGS--EV 458 (603)
T ss_pred ecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCC--EE
Confidence 0000 011345788899986 89
Q ss_pred EEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 307 AIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 307 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
++|+.||.|++|.+..........+. .|.++|+++++|||+.|||+|...+.+.+||+++
T Consensus 459 aVGG~Dgkvhvysl~g~~l~ee~~~~--~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s 518 (603)
T KOG0318|consen 459 AVGGQDGKVHVYSLSGDELKEEAKLL--EHRAAITDVAYSPDGAYLAAGDASRKVVLYDVAS 518 (603)
T ss_pred EEecccceEEEEEecCCcccceeeee--cccCCceEEEECCCCcEEEEeccCCcEEEEEccc
Confidence 99999999999999987654444444 7889999999999999999999999999999875
No 30
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.7e-39 Score=267.04 Aligned_cols=312 Identities=17% Similarity=0.256 Sum_probs=258.3
Q ss_pred cccccccccccccccccceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCC--cEEEEEecCCceeEEEeeeccCCc
Q 017553 5 AIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGN--RVTVYQCLEGGVIAALQSYVDEDK 82 (369)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~ 82 (369)
|+|-+.....|. ..+.+.+++.+.-...+|..++|+. .|+.+|.|+.. .+.||++.....+-..+ .|
T Consensus 281 vvgFssG~f~Ly--elP~f~lih~LSis~~~I~t~~~N~----tGDWiA~g~~klgQLlVweWqsEsYVlKQQ-----gH 349 (893)
T KOG0291|consen 281 VVGFSSGEFGLY--ELPDFNLIHSLSISDQKILTVSFNS----TGDWIAFGCSKLGQLLVWEWQSESYVLKQQ-----GH 349 (893)
T ss_pred EEEecCCeeEEE--ecCCceEEEEeecccceeeEEEecc----cCCEEEEcCCccceEEEEEeeccceeeecc-----cc
Confidence 344444444343 4788889998887788999999998 59999999877 49999998887766666 57
Q ss_pred ccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCc
Q 017553 83 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI 162 (369)
Q Consensus 83 ~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 162 (369)
-..+.+++++ |||+ ++++|+.||.|+|||..++-+..+|..|+..|+.+.|+. .++.+++.+-||+|+.||+...+
T Consensus 350 ~~~i~~l~YS--pDgq-~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYr 425 (893)
T KOG0291|consen 350 SDRITSLAYS--PDGQ-LIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYR 425 (893)
T ss_pred ccceeeEEEC--CCCc-EEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEe-cCCEEEEeecCCeEEeeeecccc
Confidence 7889999888 9999 999999999999999999999999999999999999999 89999999999999999999999
Q ss_pred EEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCC-cEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCC
Q 017553 163 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN-TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN 241 (369)
Q Consensus 163 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (369)
..+++.. ...-...|++..| .|.++++|+.|. .|.+|+++++ ..+-.+.+|.+
T Consensus 426 NfRTft~--P~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTG-----------------------qllDiLsGHEg 479 (893)
T KOG0291|consen 426 NFRTFTS--PEPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTG-----------------------QLLDILSGHEG 479 (893)
T ss_pred eeeeecC--CCceeeeEEEEcC-CCCEEEeeccceEEEEEEEeecC-----------------------eeeehhcCCCC
Confidence 9999874 2334567888998 888888888887 5999999994 45778899999
Q ss_pred ceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEE
Q 017553 242 YVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE 319 (369)
Q Consensus 242 ~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d 319 (369)
+|.+++|+ ++.|++++.|.+|++||+-.... .+..+. ....+..++|+|+|+ .|++++-||.|.+||
T Consensus 480 PVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~--------~vEtl~-i~sdvl~vsfrPdG~--elaVaTldgqItf~d 548 (893)
T KOG0291|consen 480 PVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSG--------TVETLE-IRSDVLAVSFRPDGK--ELAVATLDGQITFFD 548 (893)
T ss_pred cceeeEEccccCeEEeccccceEEEEEeeccCc--------eeeeEe-eccceeEEEEcCCCC--eEEEEEecceEEEEE
Confidence 99998887 88999999999999999876542 222222 235789999999997 899999999999999
Q ss_pred ccCCCcee----------------EEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 320 LQSSPPVL----------------IARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 320 ~~~~~~~~----------------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
........ ...-+........+.+++++||.+|++|+....|++|++.+
T Consensus 549 ~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~ 613 (893)
T KOG0291|consen 549 IKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPE 613 (893)
T ss_pred hhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECch
Confidence 87652210 00001122345789999999999999999999999999864
No 31
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.4e-39 Score=238.89 Aligned_cols=266 Identities=18% Similarity=0.220 Sum_probs=215.6
Q ss_pred cccccccccceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEe
Q 017553 13 GSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSW 91 (369)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 91 (369)
|.+...+.+--.+++.|+||+..|..++.++ +|++..+++.|+ +++||+.+++....+. .|...|.++++
T Consensus 43 W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~----dg~~alS~swD~~lrlWDl~~g~~t~~f~-----GH~~dVlsva~ 113 (315)
T KOG0279|consen 43 WKLTSDDIKYGVPVRRLTGHSHFVSDVVLSS----DGNFALSASWDGTLRLWDLATGESTRRFV-----GHTKDVLSVAF 113 (315)
T ss_pred EEeccCccccCceeeeeeccceEecceEEcc----CCceEEeccccceEEEEEecCCcEEEEEE-----ecCCceEEEEe
Confidence 4444444445566888999999999999999 799999999999 9999999998888877 58889999988
Q ss_pred eecCCCccEEEEeecCCeEEEEEcCCccccceeecc--ccceEEEEecCCC-CceEEEEeCCCcEEEEEccCCcEEEEee
Q 017553 92 ACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGH--GDSINEIRTQPLK-PSLVVSASKDESVRLWNVQTGICILIFA 168 (369)
Q Consensus 92 ~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 168 (369)
+ +|++ .+++|+.|.+|.+|++.. .+..++..+ .+.|+|+.|+|.. ..+|++++.|++|++||+++.+....+.
T Consensus 114 s--~dn~-qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~ 189 (315)
T KOG0279|consen 114 S--TDNR-QIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFI 189 (315)
T ss_pred c--CCCc-eeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccc
Confidence 8 9998 999999999999999754 444455433 7899999999943 6799999999999999999988887777
Q ss_pred ccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeee
Q 017553 169 GAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW 248 (369)
Q Consensus 169 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 248 (369)
+|++.++.++++| +|.++++|+.||.+.+||++.++ . .....|...|.+++|
T Consensus 190 ---gh~~~v~t~~vSp-DGslcasGgkdg~~~LwdL~~~k-----------------------~-lysl~a~~~v~sl~f 241 (315)
T KOG0279|consen 190 ---GHSGYVNTVTVSP-DGSLCASGGKDGEAMLWDLNEGK-----------------------N-LYSLEAFDIVNSLCF 241 (315)
T ss_pred ---cccccEEEEEECC-CCCEEecCCCCceEEEEEccCCc-----------------------e-eEeccCCCeEeeEEe
Confidence 8999999999999 99999999999999999999842 2 233468889999999
Q ss_pred eCc-EEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEcc
Q 017553 249 LGD-FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ 321 (369)
Q Consensus 249 ~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~ 321 (369)
+++ +.++...+..|+|||+.+............-...+.......+++|+++|. .|++|..|+.|++|.+.
T Consensus 242 spnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~--tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 242 SPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQ--TLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCc--EEEeeecCCcEEEEEee
Confidence 954 666667777899999998874332221111111222234567889999997 89999999999999875
No 32
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.5e-38 Score=237.05 Aligned_cols=241 Identities=19% Similarity=0.248 Sum_probs=217.6
Q ss_pred CcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccC
Q 017553 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 160 (369)
Q Consensus 81 ~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 160 (369)
.|...|+++.|+ +|.+ .|++++.||.+.|||.-+...++.++-....|..++|+| .++++++|+.|+...||++.+
T Consensus 53 GH~~Ki~~~~ws--~Dsr-~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sP-Sg~~VAcGGLdN~Csiy~ls~ 128 (343)
T KOG0286|consen 53 GHLNKIYAMDWS--TDSR-RIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSP-SGNFVACGGLDNKCSIYPLST 128 (343)
T ss_pred ccccceeeeEec--CCcC-eEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECC-CCCeEEecCcCceeEEEeccc
Confidence 688899999999 9998 999999999999999999988888888889999999999 999999999999999999985
Q ss_pred C------cEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeeccee
Q 017553 161 G------ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF 234 (369)
Q Consensus 161 ~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (369)
. +..+.+. +|.+.+.+..|.+ ...|++++.|.+..+||++++ ..+.
T Consensus 129 ~d~~g~~~v~r~l~---gHtgylScC~f~d--D~~ilT~SGD~TCalWDie~g-----------------------~~~~ 180 (343)
T KOG0286|consen 129 RDAEGNVRVSRELA---GHTGYLSCCRFLD--DNHILTGSGDMTCALWDIETG-----------------------QQTQ 180 (343)
T ss_pred ccccccceeeeeec---CccceeEEEEEcC--CCceEecCCCceEEEEEcccc-----------------------eEEE
Confidence 5 2233444 8999999999985 567999999999999999994 4577
Q ss_pred eeccCCCceeeeeee---CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecC
Q 017553 235 IASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR 311 (369)
Q Consensus 235 ~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~ 311 (369)
.+.+|.+.|.++++. ++.+++|+.|+..++||++.+. ..+.+.+|+..|++++|.|+|. -+++|++
T Consensus 181 ~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~---------c~qtF~ghesDINsv~ffP~G~--afatGSD 249 (343)
T KOG0286|consen 181 VFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ---------CVQTFEGHESDINSVRFFPSGD--AFATGSD 249 (343)
T ss_pred EecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcc---------eeEeecccccccceEEEccCCC--eeeecCC
Confidence 888999999999986 6899999999999999999886 8999999999999999999996 8999999
Q ss_pred CCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEec
Q 017553 312 EGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 366 (369)
Q Consensus 312 dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~ 366 (369)
|++.++||++..+ .+..+.+..-..+|++++||..|++|.+|..|..+.+||.
T Consensus 250 D~tcRlyDlRaD~--~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDt 302 (343)
T KOG0286|consen 250 DATCRLYDLRADQ--ELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDT 302 (343)
T ss_pred CceeEEEeecCCc--EEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeec
Confidence 9999999999984 4555555567789999999999999999999999999996
No 33
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.5e-39 Score=250.19 Aligned_cols=296 Identities=17% Similarity=0.264 Sum_probs=238.6
Q ss_pred cceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCcc
Q 017553 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIP 99 (369)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~ 99 (369)
.|.+..+.+..|.+.|+-+.||+ +|++||+++.|. ..||.+......+...... .|..+|..+.|+ ||.+
T Consensus 212 ip~qt~qil~~htdEVWfl~FS~----nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlv--gh~~~V~yi~wS--PDdr- 282 (519)
T KOG0293|consen 212 IPSQTWQILQDHTDEVWFLQFSH----NGKYLASASKDSTAIIWIVVYDVHFKLKKTLV--GHSQPVSYIMWS--PDDR- 282 (519)
T ss_pred CCchhhhhHhhCCCcEEEEEEcC----CCeeEeeccCCceEEEEEEecCcceeeeeeee--cccCceEEEEEC--CCCC-
Confidence 45566677889999999999999 799999999999 9999987766644444333 688899999999 9999
Q ss_pred EEEEeecCCeEEEEEcCCccccceee-ccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEE
Q 017553 100 FLVAGGINGIIRVIDVSNEKLHKSFV-GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVL 178 (369)
Q Consensus 100 ~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~ 178 (369)
+|++++.+..+.+||+.+|.....+. ++...+.+++|.| |+..+++|+.|+.+..||+. |+.+...+. .....|.
T Consensus 283 yLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlD-gn~~~~W~g--vr~~~v~ 358 (519)
T KOG0293|consen 283 YLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLD-GNILGNWEG--VRDPKVH 358 (519)
T ss_pred eEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEcc-CCceeEecCCCCcEEEecCC-cchhhcccc--cccceeE
Confidence 88888888899999999999887776 3457899999999 89999999999999999996 444555552 1235699
Q ss_pred EEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEe
Q 017553 179 SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSK 256 (369)
Q Consensus 179 ~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~ 256 (369)
+++..+ ++..+++.+.|..+++++..... ... +..-..+|+++..+ ++++++.
T Consensus 359 dlait~-Dgk~vl~v~~d~~i~l~~~e~~~-----------------------dr~-lise~~~its~~iS~d~k~~Lvn 413 (519)
T KOG0293|consen 359 DLAITY-DGKYVLLVTVDKKIRLYNREARV-----------------------DRG-LISEEQPITSFSISKDGKLALVN 413 (519)
T ss_pred EEEEcC-CCcEEEEEecccceeeechhhhh-----------------------hhc-cccccCceeEEEEcCCCcEEEEE
Confidence 999999 88889999999999999988721 111 22234567777776 7788898
Q ss_pred ecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCee--EEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecC
Q 017553 257 SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIW--FIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHA 334 (369)
Q Consensus 257 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 334 (369)
-.+..+++||+...+ .++.+.+|...-. .-+|.-... .++++|++|+.|+||+..++ +++..+.
T Consensus 414 L~~qei~LWDl~e~~---------lv~kY~Ghkq~~fiIrSCFgg~~~-~fiaSGSED~kvyIWhr~sg--kll~~Ls-- 479 (519)
T KOG0293|consen 414 LQDQEIHLWDLEENK---------LVRKYFGHKQGHFIIRSCFGGGND-KFIASGSEDSKVYIWHRISG--KLLAVLS-- 479 (519)
T ss_pred cccCeeEEeecchhh---------HHHHhhcccccceEEEeccCCCCc-ceEEecCCCceEEEEEccCC--ceeEeec--
Confidence 899999999999665 6788888765433 334433222 59999999999999999999 5677777
Q ss_pred CCccceEEEEecCCC-CEEEEeecCCeEEEEecCC
Q 017553 335 QSKSPIRQTAMSYDG-STILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 335 ~~~~~v~~~~~s~~~-~~l~s~~~dg~i~vw~~~~ 368 (369)
+|...|++++|+|.. .++|+||+||+||||...+
T Consensus 480 GHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 480 GHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 999999999999955 6899999999999998753
No 34
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=7.8e-41 Score=259.90 Aligned_cols=267 Identities=20% Similarity=0.362 Sum_probs=228.8
Q ss_pred cccccccccccccccccccceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCC
Q 017553 3 RTAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDED 81 (369)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~ 81 (369)
|+.+|+......|.. ...|....-+++|..+|.++.|++ +|.++++|..++ |++|+. ....++.++. .
T Consensus 110 RLltgs~SGEFtLWN--g~~fnFEtilQaHDs~Vr~m~ws~----~g~wmiSgD~gG~iKyWqp-nmnnVk~~~a----h 178 (464)
T KOG0284|consen 110 RLLTGSQSGEFTLWN--GTSFNFETILQAHDSPVRTMKWSH----NGTWMISGDKGGMIKYWQP-NMNNVKIIQA----H 178 (464)
T ss_pred eeEeecccccEEEec--CceeeHHHHhhhhcccceeEEEcc----CCCEEEEcCCCceEEeccc-chhhhHHhhH----h
Confidence 345555555544443 444555555689999999999999 699999999999 999995 4444555554 4
Q ss_pred cccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCC
Q 017553 82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG 161 (369)
Q Consensus 82 ~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~ 161 (369)
|.+.|++++|+ |+.. .+++++.||+|+|||....+....+.+|.-.|.+++|+| ...+|++||.|..|++||.+++
T Consensus 179 h~eaIRdlafS--pnDs-kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP-~kgLiasgskDnlVKlWDprSg 254 (464)
T KOG0284|consen 179 HAEAIRDLAFS--PNDS-KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHP-TKGLIASGSKDNLVKLWDPRSG 254 (464)
T ss_pred hhhhhheeccC--CCCc-eeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCC-ccceeEEccCCceeEeecCCCc
Confidence 66899999999 6666 899999999999999999998899999999999999999 8889999999999999999999
Q ss_pred cEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCC
Q 017553 162 ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN 241 (369)
Q Consensus 162 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (369)
+++.++. +|+..|..+.|+| ++++|++++.|..++++|+++ ...+..+.+|..
T Consensus 255 ~cl~tlh---~HKntVl~~~f~~-n~N~Llt~skD~~~kv~DiR~-----------------------mkEl~~~r~Hkk 307 (464)
T KOG0284|consen 255 SCLATLH---GHKNTVLAVKFNP-NGNWLLTGSKDQSCKVFDIRT-----------------------MKELFTYRGHKK 307 (464)
T ss_pred chhhhhh---hccceEEEEEEcC-CCCeeEEccCCceEEEEehhH-----------------------hHHHHHhhcchh
Confidence 9999998 7999999999999 889999999999999999997 456778899999
Q ss_pred ceeeeeee---CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEE
Q 017553 242 YVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW 318 (369)
Q Consensus 242 ~v~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~ 318 (369)
.++++.|+ ..+|.+|+.||.|..|.+...++ ....-..|...|++++|+|-|. +|++|+.|.++++|
T Consensus 308 dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p--------~~~i~~AHd~~iwsl~~hPlGh--il~tgsnd~t~rfw 377 (464)
T KOG0284|consen 308 DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEP--------LGEIPPAHDGEIWSLAYHPLGH--ILATGSNDRTVRFW 377 (464)
T ss_pred hheeeccccccccceeeccCCCceEEEecccccc--------ccCCCcccccceeeeeccccce--eEeecCCCcceeee
Confidence 99999997 78999999999999999985442 2333456889999999999996 99999999999999
Q ss_pred Ecc
Q 017553 319 ELQ 321 (369)
Q Consensus 319 d~~ 321 (369)
.-.
T Consensus 378 ~r~ 380 (464)
T KOG0284|consen 378 TRN 380 (464)
T ss_pred ccC
Confidence 754
No 35
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.7e-37 Score=259.12 Aligned_cols=285 Identities=22% Similarity=0.354 Sum_probs=244.1
Q ss_pred cccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecC
Q 017553 29 LQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN 107 (369)
Q Consensus 29 ~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~d 107 (369)
+......|+|.+|++ ..++||++-..+ ..+|.+..-..+..+. ....+|..++|+ ..|. +|+.|+..
T Consensus 261 ln~~~~kvtaa~fH~----~t~~lvvgFssG~f~LyelP~f~lih~LS-----is~~~I~t~~~N--~tGD-WiA~g~~k 328 (893)
T KOG0291|consen 261 LNQNSSKVTAAAFHK----GTNLLVVGFSSGEFGLYELPDFNLIHSLS-----ISDQKILTVSFN--STGD-WIAFGCSK 328 (893)
T ss_pred ecccccceeeeeccC----CceEEEEEecCCeeEEEecCCceEEEEee-----cccceeeEEEec--ccCC-EEEEcCCc
Confidence 344558899999999 468899998888 7799999888888877 456788888888 7788 88887654
Q ss_pred -CeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCC
Q 017553 108 -GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSD 186 (369)
Q Consensus 108 -g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 186 (369)
|.+.||++.+...+.+.++|...+++++++| |++++++|+.||.|+|||.+++-|+.++. .|+..|+.+.|+. .
T Consensus 329 lgQLlVweWqsEsYVlKQQgH~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~SgfC~vTFt---eHts~Vt~v~f~~-~ 403 (893)
T KOG0291|consen 329 LGQLLVWEWQSESYVLKQQGHSDRITSLAYSP-DGQLIATGAEDGKVKVWNTQSGFCFVTFT---EHTSGVTAVQFTA-R 403 (893)
T ss_pred cceEEEEEeeccceeeeccccccceeeEEECC-CCcEEEeccCCCcEEEEeccCceEEEEec---cCCCceEEEEEEe-c
Confidence 8999999999999999999999999999999 99999999999999999999999999999 7999999999998 9
Q ss_pred ceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeecc-CCCceeeeeee--CcEEEEeecCCe-E
Q 017553 187 IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV-HSNYVDCNRWL--GDFILSKSVDNE-I 262 (369)
Q Consensus 187 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~--~~~l~~~~~d~~-i 262 (369)
++.+++.+.||+|+.||+..... .+++.. .+-...|++.+ |..+++|+.|.. |
T Consensus 404 g~~llssSLDGtVRAwDlkRYrN-----------------------fRTft~P~p~QfscvavD~sGelV~AG~~d~F~I 460 (893)
T KOG0291|consen 404 GNVLLSSSLDGTVRAWDLKRYRN-----------------------FRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEI 460 (893)
T ss_pred CCEEEEeecCCeEEeeeecccce-----------------------eeeecCCCceeeeEEEEcCCCCEEEeeccceEEE
Confidence 99999999999999999988432 222221 23344566665 889999988875 9
Q ss_pred EEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEE
Q 017553 263 VLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQ 342 (369)
Q Consensus 263 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~ 342 (369)
.+|++.+++ .+..+.+|+++|.+++|+|.+. .|++++.|.+|++||+-.... ...+++ +...++.
T Consensus 461 fvWS~qTGq---------llDiLsGHEgPVs~l~f~~~~~--~LaS~SWDkTVRiW~if~s~~-~vEtl~---i~sdvl~ 525 (893)
T KOG0291|consen 461 FVWSVQTGQ---------LLDILSGHEGPVSGLSFSPDGS--LLASGSWDKTVRIWDIFSSSG-TVETLE---IRSDVLA 525 (893)
T ss_pred EEEEeecCe---------eeehhcCCCCcceeeEEccccC--eEEeccccceEEEEEeeccCc-eeeeEe---eccceeE
Confidence 999999998 7899999999999999999997 999999999999999987632 233343 3367999
Q ss_pred EEecCCCCEEEEeecCCeEEEEecCC
Q 017553 343 TAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 343 ~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
++|+|||+-||++..||.|.+||++.
T Consensus 526 vsfrPdG~elaVaTldgqItf~d~~~ 551 (893)
T KOG0291|consen 526 VSFRPDGKELAVATLDGQITFFDIKE 551 (893)
T ss_pred EEEcCCCCeEEEEEecceEEEEEhhh
Confidence 99999999999999999999999864
No 36
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.5e-37 Score=258.64 Aligned_cols=297 Identities=16% Similarity=0.236 Sum_probs=254.1
Q ss_pred cccceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCC
Q 017553 19 KKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDG 97 (369)
Q Consensus 19 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g 97 (369)
+....++.+.+-|..+.|..++|--. ..++||.+++.. +++|++.+...- .+. .|.+.|.++... .+|
T Consensus 309 d~~~l~i~k~ivG~ndEI~Dm~~lG~---e~~~laVATNs~~lr~y~~~~~~c~-ii~-----GH~e~vlSL~~~--~~g 377 (775)
T KOG0319|consen 309 DEDELTIVKQIVGYNDEILDMKFLGP---EESHLAVATNSPELRLYTLPTSYCQ-IIP-----GHTEAVLSLDVW--SSG 377 (775)
T ss_pred EccccEEehhhcCCchhheeeeecCC---ccceEEEEeCCCceEEEecCCCceE-EEe-----Cchhheeeeeec--ccC
Confidence 45667788888999999999998642 468899998887 999987766554 444 688999999844 567
Q ss_pred ccEEEEeecCCeEEEEEcCCc----cccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEE---EEe---
Q 017553 98 IPFLVAGGINGIIRVIDVSNE----KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICI---LIF--- 167 (369)
Q Consensus 98 ~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~---~~~--- 167 (369)
- +|++|+.|.++++|.++++ .++....+|+..|.+++++.....+|+++|.|+++++|++...+.. ..+
T Consensus 378 ~-llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~ 456 (775)
T KOG0319|consen 378 D-LLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCR 456 (775)
T ss_pred c-EEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhh
Confidence 6 9999999999999988544 2456677999999999998877789999999999999999762211 111
Q ss_pred eccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeee
Q 017553 168 AGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNR 247 (369)
Q Consensus 168 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 247 (369)
.....|...|++++++| +..+++||+.|++.++|++.. ......+.+|...|.|+.
T Consensus 457 ~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~-----------------------~~l~~vLsGH~RGvw~V~ 512 (775)
T KOG0319|consen 457 YTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQ-----------------------LRLLGVLSGHTRGVWCVS 512 (775)
T ss_pred HHHHhhcccccceEecC-CCceEEecccccceeeecccC-----------------------ceEEEEeeCCccceEEEE
Confidence 01226999999999999 899999999999999999996 345678899999999999
Q ss_pred ee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCc
Q 017553 248 WL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP 325 (369)
Q Consensus 248 ~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~ 325 (369)
|+ .+.+++++.|.+|+||.+.+.. ++.++.+|.+.|..+.|-.+++ .|++++.||-|++|+++++
T Consensus 513 Fs~~dq~laT~SgD~TvKIW~is~fS---------ClkT~eGH~~aVlra~F~~~~~--qliS~~adGliKlWnikt~-- 579 (775)
T KOG0319|consen 513 FSKNDQLLATCSGDKTVKIWSISTFS---------CLKTFEGHTSAVLRASFIRNGK--QLISAGADGLIKLWNIKTN-- 579 (775)
T ss_pred eccccceeEeccCCceEEEEEeccce---------eeeeecCccceeEeeeeeeCCc--EEEeccCCCcEEEEeccch--
Confidence 98 6699999999999999999887 8999999999999999999997 8999999999999999999
Q ss_pred eeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEec
Q 017553 326 VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 366 (369)
Q Consensus 326 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~ 366 (369)
.++..+. .|...|.++..+|.+.+++||+.||.|.+|.=
T Consensus 580 eC~~tlD--~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD 618 (775)
T KOG0319|consen 580 ECEMTLD--AHNDRVWALSVSPLLDMFVTGGGDGRIIFWKD 618 (775)
T ss_pred hhhhhhh--hccceeEEEeecCccceeEecCCCeEEEEeec
Confidence 4566777 99999999999999999999999999999973
No 37
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.4e-37 Score=257.11 Aligned_cols=287 Identities=19% Similarity=0.284 Sum_probs=246.7
Q ss_pred ecccCCcCeEEEEEeeccCCCccEEEEecCCcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecC
Q 017553 28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN 107 (369)
Q Consensus 28 ~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~d 107 (369)
.+.+|...|.++++|. +...+++++++.++||+..+.+.++++.. +.+.+..|. |.++ ++++|..+
T Consensus 368 ~~~GHR~dVRsl~vS~----d~~~~~Sga~~SikiWn~~t~kciRTi~~-------~y~l~~~Fv--pgd~-~Iv~G~k~ 433 (888)
T KOG0306|consen 368 EIGGHRSDVRSLCVSS----DSILLASGAGESIKIWNRDTLKCIRTITC-------GYILASKFV--PGDR-YIVLGTKN 433 (888)
T ss_pred eeccchhheeEEEeec----CceeeeecCCCcEEEEEccCcceeEEecc-------ccEEEEEec--CCCc-eEEEeccC
Confidence 3579999999999998 56788888888899999999999988763 244445555 8888 99999999
Q ss_pred CeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccC-----CcE--EEEeec--cCCCCCcEE
Q 017553 108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT-----GIC--ILIFAG--AGGHRNEVL 178 (369)
Q Consensus 108 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~-----~~~--~~~~~~--~~~~~~~v~ 178 (369)
|.+.+||+.+...+.++++|.+.|++++.+| ++..+++||.|.+|++||+.- |.. ...+.. ...-++.|.
T Consensus 434 Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL 512 (888)
T KOG0306|consen 434 GELQVFDLASASLVETIRAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVL 512 (888)
T ss_pred CceEEEEeehhhhhhhhhccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEE
Confidence 9999999999999999999999999999999 899999999999999999752 111 111110 002467899
Q ss_pred EEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEe
Q 017553 179 SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSK 256 (369)
Q Consensus 179 ~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~ 256 (369)
|+.++| ++.+|+.+-.|.++++|-+++ -.-...+-+|.-+|.|+..+ ++++++|
T Consensus 513 ~v~~Sp-dgk~LaVsLLdnTVkVyflDt-----------------------lKFflsLYGHkLPV~smDIS~DSklivTg 568 (888)
T KOG0306|consen 513 CVSVSP-DGKLLAVSLLDNTVKVYFLDT-----------------------LKFFLSLYGHKLPVLSMDISPDSKLIVTG 568 (888)
T ss_pred EEEEcC-CCcEEEEEeccCeEEEEEecc-----------------------eeeeeeecccccceeEEeccCCcCeEEec
Confidence 999999 999999999999999999998 33456788999999999876 8899999
Q ss_pred ecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCC
Q 017553 257 SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQS 336 (369)
Q Consensus 257 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 336 (369)
+.|..|++|-+.-+. +-..+..|...|.++.|.|... ++.+++.|+.|+-||-... ..+..+. +|
T Consensus 569 SADKnVKiWGLdFGD---------CHKS~fAHdDSvm~V~F~P~~~--~FFt~gKD~kvKqWDg~kF--e~iq~L~--~H 633 (888)
T KOG0306|consen 569 SADKNVKIWGLDFGD---------CHKSFFAHDDSVMSVQFLPKTH--LFFTCGKDGKVKQWDGEKF--EEIQKLD--GH 633 (888)
T ss_pred cCCCceEEeccccch---------hhhhhhcccCceeEEEEcccce--eEEEecCcceEEeechhhh--hhheeec--cc
Confidence 999999999998777 6788889999999999999775 8899999999999998877 5667777 89
Q ss_pred ccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 337 KSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 337 ~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
...|.+++.+|+|.+++++|.|..|++|....
T Consensus 634 ~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 634 HSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred hheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 99999999999999999999999999998654
No 38
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=3.9e-38 Score=241.20 Aligned_cols=240 Identities=19% Similarity=0.371 Sum_probs=219.8
Q ss_pred CcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccC
Q 017553 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 160 (369)
Q Consensus 81 ~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 160 (369)
.|.+-|.++++. |.++ ++++|+.|++|+|||+.++++..++.+|-..|..+++++ -..++++++.|+.|+.||++.
T Consensus 149 gHlgWVr~vavd--P~n~-wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~-rHpYlFs~gedk~VKCwDLe~ 224 (460)
T KOG0285|consen 149 GHLGWVRSVAVD--PGNE-WFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSK-RHPYLFSAGEDKQVKCWDLEY 224 (460)
T ss_pred hccceEEEEeeC--CCce-eEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecc-cCceEEEecCCCeeEEEechh
Confidence 577889999988 7777 999999999999999999999999999999999999999 788999999999999999999
Q ss_pred CcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCC
Q 017553 161 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 240 (369)
Q Consensus 161 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (369)
++.++.+. +|-..|++++.+| .-..|++|+.|.++++||+|+ ..++..+.+|.
T Consensus 225 nkvIR~Yh---GHlS~V~~L~lhP-Tldvl~t~grDst~RvWDiRt-----------------------r~~V~~l~GH~ 277 (460)
T KOG0285|consen 225 NKVIRHYH---GHLSGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRT-----------------------RASVHVLSGHT 277 (460)
T ss_pred hhhHHHhc---cccceeEEEeccc-cceeEEecCCcceEEEeeecc-----------------------cceEEEecCCC
Confidence 99999888 8999999999999 888999999999999999999 67789999999
Q ss_pred Cceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEE
Q 017553 241 NYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW 318 (369)
Q Consensus 241 ~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~ 318 (369)
..|..+.+. ...+++|+.|++|++||++.++ .+..+..|...+.+++.+|... .+++++.|. |+-|
T Consensus 278 ~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agk---------t~~tlt~hkksvral~lhP~e~--~fASas~dn-ik~w 345 (460)
T KOG0285|consen 278 NPVASVMCQPTDPQVITGSHDSTVRLWDLRAGK---------TMITLTHHKKSVRALCLHPKEN--LFASASPDN-IKQW 345 (460)
T ss_pred CcceeEEeecCCCceEEecCCceEEEeeeccCc---------eeEeeecccceeeEEecCCchh--hhhccCCcc-ceec
Confidence 999999998 7799999999999999999987 6778888899999999999884 788888775 9999
Q ss_pred EccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 319 ELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 319 d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
++..+ .....+. +|.+.|++++.+.|+ ++++|+++|.+.+||.++
T Consensus 346 ~~p~g--~f~~nls--gh~~iintl~~nsD~-v~~~G~dng~~~fwdwks 390 (460)
T KOG0285|consen 346 KLPEG--EFLQNLS--GHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKS 390 (460)
T ss_pred cCCcc--chhhccc--cccceeeeeeeccCc-eEEEcCCceEEEEEecCc
Confidence 99988 4555566 899999999999886 788999999999999764
No 39
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.6e-37 Score=244.86 Aligned_cols=279 Identities=19% Similarity=0.338 Sum_probs=238.0
Q ss_pred CcCeEEEEEeeccCCCccEEEEecCCcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEE
Q 017553 33 KRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRV 112 (369)
Q Consensus 33 ~~~v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~v 112 (369)
.++|.+++|+|..| .-+|+++.-++.||+..+....+.+.. ....+++++|. .||+ +|++|...|.|+|
T Consensus 26 ~~~vssl~fsp~~P---~d~aVt~S~rvqly~~~~~~~~k~~sr-----Fk~~v~s~~fR--~DG~-LlaaGD~sG~V~v 94 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHP---YDFAVTSSVRVQLYSSVTRSVRKTFSR-----FKDVVYSVDFR--SDGR-LLAAGDESGHVKV 94 (487)
T ss_pred cCcceeEecCCCCC---CceEEecccEEEEEecchhhhhhhHHh-----hccceeEEEee--cCCe-EEEccCCcCcEEE
Confidence 45899999999654 568888888899999888887777764 56688899988 9999 9999999999999
Q ss_pred EEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEE
Q 017553 113 IDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIAS 192 (369)
Q Consensus 113 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 192 (369)
||+.+...++.+.+|+.+|..+.|+|.++..+++|+.|+.+++||+.+......+. +|++.|.|.+|+|.++.++++
T Consensus 95 fD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~---~htDYVR~g~~~~~~~hivvt 171 (487)
T KOG0310|consen 95 FDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELS---GHTDYVRCGDISPANDHIVVT 171 (487)
T ss_pred eccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEec---CCcceeEeeccccCCCeEEEe
Confidence 99888778899999999999999999999999999999999999999888655666 899999999999977889999
Q ss_pred EeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEEEecCCCC
Q 017553 193 CGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMK 270 (369)
Q Consensus 193 ~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~ 270 (369)
|+.||+|++||.+.. .+......|..+|..+.+- |..+++++ .+.+++||+.++
T Consensus 172 GsYDg~vrl~DtR~~-----------------------~~~v~elnhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G 227 (487)
T KOG0310|consen 172 GSYDGKVRLWDTRSL-----------------------TSRVVELNHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTG 227 (487)
T ss_pred cCCCceEEEEEeccC-----------------------CceeEEecCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCC
Confidence 999999999999982 1233445688899998886 56777755 568999999977
Q ss_pred CCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCC
Q 017553 271 EQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGS 350 (369)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 350 (369)
.+ .+.....|...|+|+++..++. .|++|+-|+.|++||+.+. +.+..+..+ ++|.+++.+|+++
T Consensus 228 ~q--------ll~~~~~H~KtVTcL~l~s~~~--rLlS~sLD~~VKVfd~t~~--Kvv~s~~~~---~pvLsiavs~dd~ 292 (487)
T KOG0310|consen 228 GQ--------LLTSMFNHNKTVTCLRLASDST--RLLSGSLDRHVKVFDTTNY--KVVHSWKYP---GPVLSIAVSPDDQ 292 (487)
T ss_pred ce--------ehhhhhcccceEEEEEeecCCc--eEeecccccceEEEEccce--EEEEeeecc---cceeeEEecCCCc
Confidence 54 5556666889999999999885 8999999999999997776 455555443 7999999999999
Q ss_pred EEEEeecCCeEEEE
Q 017553 351 TILSCCEDGAIWRW 364 (369)
Q Consensus 351 ~l~s~~~dg~i~vw 364 (369)
.++.|..||.+.+=
T Consensus 293 t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 293 TVVIGMSNGLVSIR 306 (487)
T ss_pred eEEEecccceeeee
Confidence 99999999987654
No 40
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-37 Score=262.23 Aligned_cols=308 Identities=16% Similarity=0.239 Sum_probs=252.6
Q ss_pred cccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecC
Q 017553 29 LQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN 107 (369)
Q Consensus 29 ~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~d 107 (369)
+..-+..|..++|+|. ..++.++-..+ |.+||..-+..+..+. .|+++|..++|. |.+. ++++|+.|
T Consensus 5 fEskSsRvKglsFHP~----rPwILtslHsG~IQlWDYRM~tli~rFd-----eHdGpVRgv~FH--~~qp-lFVSGGDD 72 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPK----RPWILTSLHSGVIQLWDYRMGTLIDRFD-----EHDGPVRGVDFH--PTQP-LFVSGGDD 72 (1202)
T ss_pred hhcccccccceecCCC----CCEEEEeecCceeeeehhhhhhHHhhhh-----ccCCccceeeec--CCCC-eEEecCCc
Confidence 4556788999999994 56777777777 9999999888888877 699999999998 8777 99999999
Q ss_pred CeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCc
Q 017553 108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDI 187 (369)
Q Consensus 108 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 187 (369)
-.|+||+..+.+++.++.+|-+.|..+.|++ .-..|+++|.|.+|+||+.++++++..+. ||...|+|..|+| ..
T Consensus 73 ykIkVWnYk~rrclftL~GHlDYVRt~~FHh-eyPWIlSASDDQTIrIWNwqsr~~iavlt---GHnHYVMcAqFhp-tE 147 (1202)
T KOG0292|consen 73 YKIKVWNYKTRRCLFTLLGHLDYVRTVFFHH-EYPWILSASDDQTIRIWNWQSRKCIAVLT---GHNHYVMCAQFHP-TE 147 (1202)
T ss_pred cEEEEEecccceehhhhccccceeEEeeccC-CCceEEEccCCCeEEEEeccCCceEEEEe---cCceEEEeeccCC-cc
Confidence 9999999999999999999999999999999 88899999999999999999999999999 8999999999999 88
Q ss_pred eEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCC------CCCceeecceeeeccCCCceeeeeeeC--cEEEEeecC
Q 017553 188 YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSK------FPTKYVQFPVFIASVHSNYVDCNRWLG--DFILSKSVD 259 (369)
Q Consensus 188 ~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~d 259 (369)
.++++++.|.+|++||+....+....+-...+.... .-..........+.+|...|.-++|.+ .++++|+.|
T Consensus 148 DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DD 227 (1202)
T KOG0292|consen 148 DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADD 227 (1202)
T ss_pred ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCc
Confidence 999999999999999998743222111111111000 001111223457889999999999997 699999999
Q ss_pred CeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccc
Q 017553 260 NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSP 339 (369)
Q Consensus 260 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 339 (369)
..|++|.++..+. -.+.+..+|...|.++-|+|... ++++.++|+.|++||+.... .+..+. .....
T Consensus 228 RqVKlWrmnetKa-------WEvDtcrgH~nnVssvlfhp~q~--lIlSnsEDksirVwDm~kRt--~v~tfr--rendR 294 (1202)
T KOG0292|consen 228 RQVKLWRMNETKA-------WEVDTCRGHYNNVSSVLFHPHQD--LILSNSEDKSIRVWDMTKRT--SVQTFR--RENDR 294 (1202)
T ss_pred ceeeEEEeccccc-------eeehhhhcccCCcceEEecCccc--eeEecCCCccEEEEeccccc--ceeeee--ccCCe
Confidence 9999999876542 14677788999999999999885 99999999999999999874 455554 33467
Q ss_pred eEEEEecCCCCEEEEeecCCeEEEEecC
Q 017553 340 IRQTAMSYDGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 340 v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 367 (369)
...++-+|..+++|.|-+. -+.||.++
T Consensus 295 FW~laahP~lNLfAAgHDs-Gm~VFkle 321 (1202)
T KOG0292|consen 295 FWILAAHPELNLFAAGHDS-GMIVFKLE 321 (1202)
T ss_pred EEEEEecCCcceeeeecCC-ceEEEEEc
Confidence 8899999999998877544 46677765
No 41
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-37 Score=225.13 Aligned_cols=242 Identities=21% Similarity=0.331 Sum_probs=213.7
Q ss_pred CcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccC
Q 017553 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 160 (369)
Q Consensus 81 ~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 160 (369)
.+++.|..+.+. -+|+ +.++++.|.+|++|+...+.+++++.+|..+|..++.+. ++..|++|+.|..|.+||+.+
T Consensus 15 ~~qgaV~avryN--~dGn-Y~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~-Dnskf~s~GgDk~v~vwDV~T 90 (307)
T KOG0316|consen 15 CAQGAVRAVRYN--VDGN-YCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSS-DNSKFASCGGDKAVQVWDVNT 90 (307)
T ss_pred ccccceEEEEEc--cCCC-EEEEcCCCceEEeecccccceeeeecCCCceeeeccccc-cccccccCCCCceEEEEEccc
Confidence 578889888887 8999 999999999999999999999999999999999999999 888999999999999999999
Q ss_pred CcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCC
Q 017553 161 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 240 (369)
Q Consensus 161 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (369)
|+.++.+. +|.+.|+.++|+. +...+++|+.|.++++||-|+.. ..|++.+....
T Consensus 91 Gkv~Rr~r---gH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s---------------------~ePiQildea~ 145 (307)
T KOG0316|consen 91 GKVDRRFR---GHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRS---------------------FEPIQILDEAK 145 (307)
T ss_pred Ceeeeecc---cccceeeEEEecC-cceEEEeccccceeEEEEcccCC---------------------CCccchhhhhc
Confidence 99999999 8999999999998 88999999999999999999832 35777888888
Q ss_pred CceeeeeeeCcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEc
Q 017553 241 NYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL 320 (369)
Q Consensus 241 ~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~ 320 (369)
+.|.++...+..+++|+.||+++.||++.+. ....+- ..+|+++.|+++++ ..+.++.|+++++.|-
T Consensus 146 D~V~Si~v~~heIvaGS~DGtvRtydiR~G~---------l~sDy~--g~pit~vs~s~d~n--c~La~~l~stlrLlDk 212 (307)
T KOG0316|consen 146 DGVSSIDVAEHEIVAGSVDGTVRTYDIRKGT---------LSSDYF--GHPITSVSFSKDGN--CSLASSLDSTLRLLDK 212 (307)
T ss_pred CceeEEEecccEEEeeccCCcEEEEEeecce---------eehhhc--CCcceeEEecCCCC--EEEEeeccceeeeccc
Confidence 9999999999999999999999999999886 333333 35899999999996 8889999999999999
Q ss_pred cCCCceeEEEeecCCCcc--ceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 321 QSSPPVLIARLSHAQSKS--PIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
.+++ ++..+. +|.. .=..++++.....+++|++||.|++||+.+
T Consensus 213 ~tGk--lL~sYk--Ghkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd 258 (307)
T KOG0316|consen 213 ETGK--LLKSYK--GHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVD 258 (307)
T ss_pred chhH--HHHHhc--ccccceeeeeeeecccceeEEeccCCceEEEEEecc
Confidence 9994 455555 4443 334667777778999999999999999865
No 42
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.8e-38 Score=240.21 Aligned_cols=244 Identities=27% Similarity=0.402 Sum_probs=217.9
Q ss_pred CcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccC
Q 017553 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 160 (369)
Q Consensus 81 ~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 160 (369)
.+..+|..+-+. |+-. ++++++.|++|++||..++++...+++|.+.+.+|+|+. .+.++++++.|-.+++||..+
T Consensus 106 g~r~~vt~v~~h--p~~~-~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a-~Gk~l~tcSsDl~~~LWd~~~ 181 (406)
T KOG0295|consen 106 GHRSSVTRVIFH--PSEA-LVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDA-SGKYLATCSSDLSAKLWDFDT 181 (406)
T ss_pred ccccceeeeeec--cCce-EEEEecCCceEEEEEccchhhhhhhhccccceeEEEEec-CccEEEecCCccchhheeHHH
Confidence 466777777776 7776 899999999999999999999999999999999999999 899999999999999999976
Q ss_pred -CcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccC
Q 017553 161 -GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH 239 (369)
Q Consensus 161 -~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (369)
.++++.+. +|...|.+++|-| .+.++++++.|.+|+.|++.+ ...+.++.+|
T Consensus 182 ~~~c~ks~~---gh~h~vS~V~f~P-~gd~ilS~srD~tik~We~~t-----------------------g~cv~t~~~h 234 (406)
T KOG0295|consen 182 FFRCIKSLI---GHEHGVSSVFFLP-LGDHILSCSRDNTIKAWECDT-----------------------GYCVKTFPGH 234 (406)
T ss_pred HHHHHHHhc---CcccceeeEEEEe-cCCeeeecccccceeEEeccc-----------------------ceeEEeccCc
Confidence 45555555 8999999999999 789999999999999999999 5678899999
Q ss_pred CCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCC-------------cc
Q 017553 240 SNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFH-------------YN 304 (369)
Q Consensus 240 ~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-------------~~ 304 (369)
+..|..+..+ |.++++++.|.++++|-+.+.+ +...+..|+.++.+++|.|... ..
T Consensus 235 ~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~---------~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~ 305 (406)
T KOG0295|consen 235 SEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQ---------CKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQ 305 (406)
T ss_pred hHhEEEEEecCCeeEEEecCCCceEEEEEeccch---------hhhhhhccccceEEEEecccccCcchhhccCCCCCcc
Confidence 9999999997 7799999999999999999886 5677778888899999887432 24
Q ss_pred EEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 305 AAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 305 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
++.+++.|++|++||+.++ ..+.++. +|...|..++|+|.|+||+++.+|+++++||+++
T Consensus 306 ~l~s~SrDktIk~wdv~tg--~cL~tL~--ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~ 365 (406)
T KOG0295|consen 306 VLGSGSRDKTIKIWDVSTG--MCLFTLV--GHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKN 365 (406)
T ss_pred EEEeecccceEEEEeccCC--eEEEEEe--cccceeeeeEEcCCCeEEEEEecCCcEEEEEecc
Confidence 8999999999999999999 5677777 9999999999999999999999999999999874
No 43
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.6e-38 Score=242.75 Aligned_cols=267 Identities=18% Similarity=0.345 Sum_probs=229.4
Q ss_pred cccccccccccccccccceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcc
Q 017553 5 AIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKE 83 (369)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~ 83 (369)
..|.-++.. ..|+...+.+.+.|.||++.|.|+.|.. .++++|+.|. |+|||..+++.+.++- .|.
T Consensus 211 VSGlrDnTi--kiWD~n~~~c~~~L~GHtGSVLCLqyd~------rviisGSSDsTvrvWDv~tge~l~tli-----hHc 277 (499)
T KOG0281|consen 211 VSGLRDNTI--KIWDKNSLECLKILTGHTGSVLCLQYDE------RVIVSGSSDSTVRVWDVNTGEPLNTLI-----HHC 277 (499)
T ss_pred hcccccCce--EEeccccHHHHHhhhcCCCcEEeeeccc------eEEEecCCCceEEEEeccCCchhhHHh-----hhc
Confidence 344444443 3456778888889999999999999975 6999999999 9999999999998887 588
Q ss_pred cceeEEEeeecCCCccEEEEeecCCeEEEEEcCCcc---ccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccC
Q 017553 84 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK---LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 160 (369)
Q Consensus 84 ~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 160 (369)
+.|..+.|+ +| ++++++.|.+|.+||+.... +.+.+.+|...|+.+.|+. +++++++.|.+|++|+..+
T Consensus 278 eaVLhlrf~---ng--~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~---kyIVsASgDRTikvW~~st 349 (499)
T KOG0281|consen 278 EAVLHLRFS---NG--YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWSTST 349 (499)
T ss_pred ceeEEEEEe---CC--EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc---ceEEEecCCceEEEEeccc
Confidence 889888885 33 89999999999999998764 4567789999999999964 6999999999999999999
Q ss_pred CcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCC
Q 017553 161 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 240 (369)
Q Consensus 161 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (369)
++.++++. +|...|-|+.+ .++++++|+.|.+|++||+.. +..+..+++|+
T Consensus 350 ~efvRtl~---gHkRGIAClQY---r~rlvVSGSSDntIRlwdi~~-----------------------G~cLRvLeGHE 400 (499)
T KOG0281|consen 350 CEFVRTLN---GHKRGIACLQY---RDRLVVSGSSDNTIRLWDIEC-----------------------GACLRVLEGHE 400 (499)
T ss_pred eeeehhhh---cccccceehhc---cCeEEEecCCCceEEEEeccc-----------------------cHHHHHHhchH
Confidence 99999998 89999999987 568999999999999999998 56788899999
Q ss_pred CceeeeeeeCcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEc
Q 017553 241 NYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL 320 (369)
Q Consensus 241 ~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~ 320 (369)
.-|.|+.|+.+.+++|+.||+|++||+............-++.....|.+.|..+.|..- .+++++.|.+|.|||.
T Consensus 401 eLvRciRFd~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~f----qIvsssHddtILiWdF 476 (499)
T KOG0281|consen 401 ELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEF----QIISSSHDDTILIWDF 476 (499)
T ss_pred HhhhheeecCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecce----EEEeccCCCeEEEEEc
Confidence 999999999999999999999999999988765444444466777778888988888643 6888999999999999
Q ss_pred cCCCc
Q 017553 321 QSSPP 325 (369)
Q Consensus 321 ~~~~~ 325 (369)
.++.+
T Consensus 477 l~~~~ 481 (499)
T KOG0281|consen 477 LNGPP 481 (499)
T ss_pred CCCCc
Confidence 88754
No 44
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=8.6e-38 Score=228.14 Aligned_cols=286 Identities=16% Similarity=0.250 Sum_probs=238.1
Q ss_pred cccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecC
Q 017553 29 LQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN 107 (369)
Q Consensus 29 ~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~d 107 (369)
..+|+.+|..++|||.-+ +|-+|++++.|+ -.+-+-.+|.-+.++. .|++.|+..+.. .+.. ..++++.|
T Consensus 10 c~ghtrpvvdl~~s~itp-~g~flisa~kd~~pmlr~g~tgdwigtfe-----ghkgavw~~~l~--~na~-~aasaaad 80 (334)
T KOG0278|consen 10 CHGHTRPVVDLAFSPITP-DGYFLISASKDGKPMLRNGDTGDWIGTFE-----GHKGAVWSATLN--KNAT-RAASAAAD 80 (334)
T ss_pred EcCCCcceeEEeccCCCC-CceEEEEeccCCCchhccCCCCCcEEeee-----ccCcceeeeecC--chhh-hhhhhccc
Confidence 479999999999998543 899999999998 6677777888888888 588889888876 5555 78889999
Q ss_pred CeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCc-EEEEeeccCCCCCcEEEEEecCCC
Q 017553 108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI-CILIFAGAGGHRNEVLSVDFHPSD 186 (369)
Q Consensus 108 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~ 186 (369)
-+-++||.-+|..+..|. |...|.+++|+. +.+.|++|+.+..+||+|++..+ +...+. +|.+.|..+.|.. .
T Consensus 81 ftakvw~a~tgdelhsf~-hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~---ghtg~Ir~v~wc~-e 154 (334)
T KOG0278|consen 81 FTAKVWDAVTGDELHSFE-HKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEIS---GHTGGIRTVLWCH-E 154 (334)
T ss_pred chhhhhhhhhhhhhhhhh-hhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCchhhc---CCCCcceeEEEec-c
Confidence 999999999999999997 889999999999 89999999999999999998654 344555 8999999999997 7
Q ss_pred ceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee-CcEEEEeecCCeEEEe
Q 017553 187 IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLW 265 (369)
Q Consensus 187 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~i~ 265 (369)
.+.|+++..|++||+||.+++. .+..+. .+..|+++..+ ...+++....+.|.+|
T Consensus 155 D~~iLSSadd~tVRLWD~rTgt-----------------------~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fw 210 (334)
T KOG0278|consen 155 DKCILSSADDKTVRLWDHRTGT-----------------------EVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFW 210 (334)
T ss_pred CceEEeeccCCceEEEEeccCc-----------------------EEEEEe-cCCCCcceeeccCCCEEEEecCceeEEe
Confidence 7888888999999999999953 233332 34567777776 4456666778899999
Q ss_pred cCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEe
Q 017553 266 EPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAM 345 (369)
Q Consensus 266 d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~ 345 (369)
|..+.. .+..+..+ ..|.+..++|+.. .+++|++|..++.||..++.. +..+ ..+|-++|.++.|
T Consensus 211 daksf~---------~lKs~k~P-~nV~SASL~P~k~--~fVaGged~~~~kfDy~TgeE--i~~~-nkgh~gpVhcVrF 275 (334)
T KOG0278|consen 211 DAKSFG---------LLKSYKMP-CNVESASLHPKKE--FFVAGGEDFKVYKFDYNTGEE--IGSY-NKGHFGPVHCVRF 275 (334)
T ss_pred cccccc---------ceeeccCc-cccccccccCCCc--eEEecCcceEEEEEeccCCce--eeec-ccCCCCceEEEEE
Confidence 999776 56666654 5688899999985 899999999999999999953 2222 2388899999999
Q ss_pred cCCCCEEEEeecCCeEEEEecCC
Q 017553 346 SYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 346 s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
+|||...++||.||+|++|...+
T Consensus 276 SPdGE~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 276 SPDGELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred CCCCceeeccCCCceEEEEEecC
Confidence 99999999999999999998754
No 45
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.3e-37 Score=259.77 Aligned_cols=252 Identities=21% Similarity=0.350 Sum_probs=217.9
Q ss_pred ecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEE
Q 017553 55 VGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINE 133 (369)
Q Consensus 55 ~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 133 (369)
.+.|- +.+.|..+......+- .|.++|+.+.|+ |+.+ +|+++++|+++|+|.+.+...+-.+++|..+|++
T Consensus 427 ~sad~~~~~~D~~~~~~~~~L~-----GH~GPVyg~sFs--Pd~r-fLlScSED~svRLWsl~t~s~~V~y~GH~~PVwd 498 (707)
T KOG0263|consen 427 ESADVDVDMLDDDSSGTSRTLY-----GHSGPVYGCSFS--PDRR-FLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWD 498 (707)
T ss_pred cccchhhhhccccCCceeEEee-----cCCCceeeeeec--cccc-ceeeccCCcceeeeecccceeEEEecCCCcceee
Confidence 33343 6666666666666655 699999999998 9998 9999999999999999999999999999999999
Q ss_pred EEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeee
Q 017553 134 IRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEK 213 (369)
Q Consensus 134 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~ 213 (369)
+.|+| .+-++||++.|++.++|......+++.+. +|...|.|+.|+| +.+++++|+.|.+|++||+.+
T Consensus 499 V~F~P-~GyYFatas~D~tArLWs~d~~~PlRifa---ghlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~------- 566 (707)
T KOG0263|consen 499 VQFAP-RGYYFATASHDQTARLWSTDHNKPLRIFA---GHLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVST------- 566 (707)
T ss_pred EEecC-CceEEEecCCCceeeeeecccCCchhhhc---ccccccceEEECC-cccccccCCCCceEEEEEcCC-------
Confidence 99999 89999999999999999999999999888 8999999999999 999999999999999999999
Q ss_pred eeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCC
Q 017553 214 SFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECD 291 (369)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (369)
+..++.+.+|..+|.+++|+ |.+|++|+.|+.|.+||+.+++ ++..+..|.+.
T Consensus 567 ----------------G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~---------~v~~l~~Ht~t 621 (707)
T KOG0263|consen 567 ----------------GNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGS---------LVKQLKGHTGT 621 (707)
T ss_pred ----------------CcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCc---------chhhhhcccCc
Confidence 45688889999999999998 9999999999999999999987 68888889999
Q ss_pred eeEEEEeecCCccEEEEecCCCeEEEEEccCCCce----------------------eEEEeecCCCccceEEEEecCCC
Q 017553 292 IWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPV----------------------LIARLSHAQSKSPIRQTAMSYDG 349 (369)
Q Consensus 292 i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~----------------------~~~~~~~~~~~~~v~~~~~s~~~ 349 (369)
|.++.||.+|. +|++|+.|++|++||+...... .+..+. ....+|..+.|....
T Consensus 622 i~SlsFS~dg~--vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~--tK~tpv~~l~FtrrN 697 (707)
T KOG0263|consen 622 IYSLSFSRDGN--VLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFY--TKNTPVVGLHFTRRN 697 (707)
T ss_pred eeEEEEecCCC--EEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeee--ecCceEEEEEEeccc
Confidence 99999999996 9999999999999998653221 222232 334678888888766
Q ss_pred CEEEEe
Q 017553 350 STILSC 355 (369)
Q Consensus 350 ~~l~s~ 355 (369)
-.|++|
T Consensus 698 l~L~~g 703 (707)
T KOG0263|consen 698 LLLAVG 703 (707)
T ss_pred eeEEec
Confidence 555544
No 46
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=2.9e-36 Score=232.49 Aligned_cols=284 Identities=17% Similarity=0.261 Sum_probs=232.5
Q ss_pred cCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCe
Q 017553 31 EGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGI 109 (369)
Q Consensus 31 ~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~ 109 (369)
.|.+.|.+|...+ +.+.+++.|+ +++|| ..|+....+. .|.+++..++|....+....+++++.|.+
T Consensus 103 ~hdDWVSsv~~~~------~~IltgsYDg~~riWd-~~Gk~~~~~~-----Ght~~ik~v~~v~~n~~~~~fvsas~Dqt 170 (423)
T KOG0313|consen 103 LHDDWVSSVKGAS------KWILTGSYDGTSRIWD-LKGKSIKTIV-----GHTGPIKSVAWVIKNSSSCLFVSASMDQT 170 (423)
T ss_pred cchhhhhhhcccC------ceEEEeecCCeeEEEe-cCCceEEEEe-----cCCcceeeeEEEecCCccceEEEecCCce
Confidence 4788888888765 7899999999 99999 6777777777 58889998988855444447999999999
Q ss_pred EEEEEcCCccc----cceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEcc-------------------------C
Q 017553 110 IRVIDVSNEKL----HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ-------------------------T 160 (369)
Q Consensus 110 i~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~-------------------------~ 160 (369)
+++|.++.++. ++..+||.+.|.++...+ ++..+++|+.|.+|.+|+.. +
T Consensus 171 l~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~-sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~ 249 (423)
T KOG0313|consen 171 LRLWKWNVGENKVKALKVCRGHKRSVDSVSVDS-SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGT 249 (423)
T ss_pred EEEEEecCchhhhhHHhHhcccccceeEEEecC-CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccc
Confidence 99999887743 344559999999999999 99999999999999999932 1
Q ss_pred CcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCC
Q 017553 161 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 240 (369)
Q Consensus 161 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (369)
+.++..+. +|..+|.++.|++ ...+++++.|.+|+.||+.++... .. ...+
T Consensus 250 r~P~vtl~---GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~-----------------------~~-~~~~ 300 (423)
T KOG0313|consen 250 RTPLVTLE---GHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLK-----------------------ST-LTTN 300 (423)
T ss_pred cCceEEec---ccccceeeEEEcC--CCceEeecccceEEEEEeecccce-----------------------ee-eecC
Confidence 22334444 8999999999985 678999999999999999985321 11 1234
Q ss_pred Cceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEE
Q 017553 241 NYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW 318 (369)
Q Consensus 241 ~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~ 318 (369)
..+.|+.+. .++|++|+.|..+++||.+++.. .-....+.+|...|.++.|+|... ..|++|+.|+++++|
T Consensus 301 ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~g------s~v~~s~~gH~nwVssvkwsp~~~-~~~~S~S~D~t~klW 373 (423)
T KOG0313|consen 301 KSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDG------SVVSQSLIGHKNWVSSVKWSPTNE-FQLVSGSYDNTVKLW 373 (423)
T ss_pred cceeEeecccccceeeecCCCCceeecCCCCCCC------ceeEEeeecchhhhhheecCCCCc-eEEEEEecCCeEEEE
Confidence 556777776 67999999999999999998853 225678889999999999999987 589999999999999
Q ss_pred EccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecC
Q 017553 319 ELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 319 d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 367 (369)
|+++.+ ..+..+. +|...|.++.|+ ++.+|++|+.|..|+|+.-.
T Consensus 374 DvRS~k-~plydI~--~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 374 DVRSTK-APLYDIA--GHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred EeccCC-Ccceeec--cCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 999875 2556666 888999999998 45699999999999998754
No 47
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=6.8e-36 Score=220.22 Aligned_cols=286 Identities=17% Similarity=0.200 Sum_probs=233.8
Q ss_pred cccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecC
Q 017553 29 LQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN 107 (369)
Q Consensus 29 ~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~d 107 (369)
|+||+.+++.|.|+. +|++|.+|+.|. ..||-..+|+.+.++. .|.+.|+++... -+.+ .+++|+.|
T Consensus 6 l~GHERplTqiKyN~----eGDLlFscaKD~~~~vw~s~nGerlGty~-----GHtGavW~~Did--~~s~-~liTGSAD 73 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNR----EGDLLFSCAKDSTPTVWYSLNGERLGTYD-----GHTGAVWCCDID--WDSK-HLITGSAD 73 (327)
T ss_pred cccCccccceEEecC----CCcEEEEecCCCCceEEEecCCceeeeec-----CCCceEEEEEec--CCcc-eeeecccc
Confidence 689999999999998 799999999999 9999988999999998 589999999988 6666 99999999
Q ss_pred CeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeC-----CCcEEEEEcc-------CCcEEEEeeccCCCCC
Q 017553 108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASK-----DESVRLWNVQ-------TGICILIFAGAGGHRN 175 (369)
Q Consensus 108 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-----dg~i~vwd~~-------~~~~~~~~~~~~~~~~ 175 (369)
.++++||+++|+.+.+++ ...+|..+.|++ ++++++.... .+.|.++|++ ..++...+. .+..
T Consensus 74 ~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~---t~~s 148 (327)
T KOG0643|consen 74 QTAKLWDVETGKQLATWK-TNSPVKRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP---TPDS 148 (327)
T ss_pred ceeEEEEcCCCcEEEEee-cCCeeEEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec---CCcc
Confidence 999999999999999998 567899999999 7777766543 4789999998 455666666 5789
Q ss_pred cEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEE
Q 017553 176 EVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFI 253 (369)
Q Consensus 176 ~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l 253 (369)
.++.+-|.| -+.+|++|..||.|..||++++.. .+.....|...|+.+.++ ..++
T Consensus 149 kit~a~Wg~-l~~~ii~Ghe~G~is~~da~~g~~----------------------~v~s~~~h~~~Ind~q~s~d~T~F 205 (327)
T KOG0643|consen 149 KITSALWGP-LGETIIAGHEDGSISIYDARTGKE----------------------LVDSDEEHSSKINDLQFSRDRTYF 205 (327)
T ss_pred ceeeeeecc-cCCEEEEecCCCcEEEEEcccCce----------------------eeechhhhccccccccccCCcceE
Confidence 999999999 889999999999999999999532 344557789999999997 6799
Q ss_pred EEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCc--------
Q 017553 254 LSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP-------- 325 (369)
Q Consensus 254 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~-------- 325 (369)
++++.|.+-++||.++.+ .+.++.. ..++++.+++|... .++.|+.....-+=-......
T Consensus 206 iT~s~Dttakl~D~~tl~---------v~Kty~t-e~PvN~aaisP~~d--~VilgGGqeA~dVTTT~~r~GKFEArFyh 273 (327)
T KOG0643|consen 206 ITGSKDTTAKLVDVRTLE---------VLKTYTT-ERPVNTAAISPLLD--HVILGGGQEAMDVTTTSTRAGKFEARFYH 273 (327)
T ss_pred EecccCccceeeecccee---------eEEEeee-cccccceecccccc--eEEecCCceeeeeeeecccccchhhhHHH
Confidence 999999999999999876 5555554 47899999999876 555554332222222111111
Q ss_pred ----eeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 326 ----VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 326 ----~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
+.+..+. +|-++|++++|+|+|+..++|+.||.|++..+..
T Consensus 274 ~i~eEEigrvk--GHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 274 LIFEEEIGRVK--GHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred HHHHHHhcccc--ccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 1223333 8899999999999999999999999999976653
No 48
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=1e-37 Score=243.00 Aligned_cols=288 Identities=22% Similarity=0.318 Sum_probs=235.8
Q ss_pred cceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCc--eeEEEeeeccCCcccceeEEEeeecCCC
Q 017553 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG--VIAALQSYVDEDKEESFYTVSWACNVDG 97 (369)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~g 97 (369)
-|-.....+..|.+.|..+.|-+ +...|++++.|. |++|+...++ ....+. ...++|..+.+. +++
T Consensus 163 lpS~~~~~ld~h~gev~~v~~l~----~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLa-----Gs~g~it~~d~d--~~~ 231 (459)
T KOG0288|consen 163 LPSRALFVLDAHEGEVHDVEFLR----NSDTLATGGSDRIIKLWNVLGEKSELISTLA-----GSLGNITSIDFD--SDN 231 (459)
T ss_pred cchhhhhhhhccccccceeEEcc----Ccchhhhcchhhhhhhhhcccchhhhhhhhh-----ccCCCcceeeec--CCC
Confidence 34445556789999999999999 468999999999 9999976555 333333 456778888887 889
Q ss_pred ccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcE
Q 017553 98 IPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEV 177 (369)
Q Consensus 98 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v 177 (369)
. .+++++.|+.+++|++.+.+...++.+|++.|+++.|.. ....+++|+.|.+|++||+....+..++. ....+
T Consensus 232 ~-~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~-~~~~vVsgs~DRtiK~WDl~k~~C~kt~l----~~S~c 305 (459)
T KOG0288|consen 232 K-HVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKL-SHSRVVSGSADRTIKLWDLQKAYCSKTVL----PGSQC 305 (459)
T ss_pred c-eEEeecCCCceeeeeccchhhhhhhcccccceeeehhhc-cccceeeccccchhhhhhhhhhheecccc----ccccc
Confidence 8 888999999999999999999999999999999999998 55569999999999999999988888776 55566
Q ss_pred EEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEE
Q 017553 178 LSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILS 255 (369)
Q Consensus 178 ~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~ 255 (369)
.+++.+ ...+++|..|++|++||++.. .+....+.+. .|+++..+ +..+++
T Consensus 306 nDI~~~---~~~~~SgH~DkkvRfwD~Rs~-----------------------~~~~sv~~gg-~vtSl~ls~~g~~lLs 358 (459)
T KOG0288|consen 306 NDIVCS---ISDVISGHFDKKVRFWDIRSA-----------------------DKTRSVPLGG-RVTSLDLSMDGLELLS 358 (459)
T ss_pred cceEec---ceeeeecccccceEEEeccCC-----------------------ceeeEeecCc-ceeeEeeccCCeEEee
Confidence 777765 467899999999999999983 3444555554 78887775 778999
Q ss_pred eecCCeEEEecCCCCCCCCCCCccceeeeccCC----CCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEe
Q 017553 256 KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP----ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARL 331 (369)
Q Consensus 256 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 331 (369)
++.|.++.+.|+++.+ ....+... ....+.+.|||++. |+++|+.||.|+||++.+++. ...+
T Consensus 359 ssRDdtl~viDlRt~e---------I~~~~sA~g~k~asDwtrvvfSpd~~--YvaAGS~dgsv~iW~v~tgKl--E~~l 425 (459)
T KOG0288|consen 359 SSRDDTLKVIDLRTKE---------IRQTFSAEGFKCASDWTRVVFSPDGS--YVAAGSADGSVYIWSVFTGKL--EKVL 425 (459)
T ss_pred ecCCCceeeeeccccc---------EEEEeeccccccccccceeEECCCCc--eeeeccCCCcEEEEEccCceE--EEEe
Confidence 9999999999999876 33333322 24588899999997 999999999999999999954 4444
Q ss_pred ecCCCccceEEEEecCCCCEEEEeecCCeEEEEe
Q 017553 332 SHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 365 (369)
Q Consensus 332 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~ 365 (369)
........|+++.|+|.|..|++++.++.+.+|.
T Consensus 426 ~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 426 SLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 4324444799999999999999999999999994
No 49
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-36 Score=247.81 Aligned_cols=273 Identities=25% Similarity=0.405 Sum_probs=235.8
Q ss_pred EEEeeccCCCccEEEEecCCcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCc
Q 017553 39 VVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE 118 (369)
Q Consensus 39 ~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~ 118 (369)
+.|+. .+.||.|....|++|+..++........ ++..|+++.|+ ++|. +|++|..+|.|.|||..+.
T Consensus 183 ldWss-----~n~laValg~~vylW~~~s~~v~~l~~~-----~~~~vtSv~ws--~~G~-~LavG~~~g~v~iwD~~~~ 249 (484)
T KOG0305|consen 183 LDWSS-----ANVLAVALGQSVYLWSASSGSVTELCSF-----GEELVTSVKWS--PDGS-HLAVGTSDGTVQIWDVKEQ 249 (484)
T ss_pred hhccc-----CCeEEEEecceEEEEecCCCceEEeEec-----CCCceEEEEEC--CCCC-EEEEeecCCeEEEEehhhc
Confidence 45554 6899999988899999888875554442 37899999999 9999 9999999999999999999
Q ss_pred cccceeec-cccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEE-eeccCCCCCcEEEEEecCCCceEEEEEeeC
Q 017553 119 KLHKSFVG-HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILI-FAGAGGHRNEVLSVDFHPSDIYRIASCGMD 196 (369)
Q Consensus 119 ~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 196 (369)
+.+..+.+ |...|.+++|. ...+.+|+.|+.|..+|++..+.... +. +|...|..+.|++ ++.++++|+.|
T Consensus 250 k~~~~~~~~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~---~H~qeVCgLkws~-d~~~lASGgnD 322 (484)
T KOG0305|consen 250 KKTRTLRGSHASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQ---GHRQEVCGLKWSP-DGNQLASGGND 322 (484)
T ss_pred cccccccCCcCceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhh---cccceeeeeEECC-CCCeeccCCCc
Confidence 99999998 99999999997 47899999999999999998876655 44 8999999999999 99999999999
Q ss_pred CcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee---CcEEEEee--cCCeEEEecCCCCC
Q 017553 197 NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKS--VDNEIVLWEPKMKE 271 (369)
Q Consensus 197 ~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~--~d~~i~i~d~~~~~ 271 (369)
+.+.|||... ..+...+..|...|.+++|+ ..+||+|+ .|++|++||..++.
T Consensus 323 N~~~Iwd~~~-----------------------~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~ 379 (484)
T KOG0305|consen 323 NVVFIWDGLS-----------------------PEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGA 379 (484)
T ss_pred cceEeccCCC-----------------------ccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCc
Confidence 9999999966 56788899999999999998 67888875 49999999999886
Q ss_pred CCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCE
Q 017553 272 QSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGST 351 (369)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 351 (369)
.+..... ...|..+.|++..+..+...|..++.|.||+..+. ..+..+. +|...|..++++|||..
T Consensus 380 ---------~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~--~~~~~l~--gH~~RVl~la~SPdg~~ 445 (484)
T KOG0305|consen 380 ---------RIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM--KLVAELL--GHTSRVLYLALSPDGET 445 (484)
T ss_pred ---------Eeccccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc--ceeeeec--CCcceeEEEEECCCCCE
Confidence 3444333 47899999999987545556778899999999986 4566666 99999999999999999
Q ss_pred EEEeecCCeEEEEecCC
Q 017553 352 ILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 352 l~s~~~dg~i~vw~~~~ 368 (369)
+++|+.|.++++|++-+
T Consensus 446 i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 446 IVTGAADETLRFWNLFD 462 (484)
T ss_pred EEEecccCcEEeccccC
Confidence 99999999999999754
No 50
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-36 Score=257.60 Aligned_cols=305 Identities=17% Similarity=0.265 Sum_probs=214.7
Q ss_pred eeeeecc-cCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccC-----CcccceeEEEeee-cC
Q 017553 24 RVTNKLQ-EGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDE-----DKEESFYTVSWAC-NV 95 (369)
Q Consensus 24 ~~~~~~~-~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~-~~ 95 (369)
...+.+. +|.++|+++.||+ ||++||+||.|+ |+||.+...+....-...... .....+..+.... ..
T Consensus 257 ~~~Qe~~~ah~gaIw~mKFS~----DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~ 332 (712)
T KOG0283|consen 257 TVVQEISNAHKGAIWAMKFSH----DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKI 332 (712)
T ss_pred EEeeccccccCCcEEEEEeCC----CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccc
Confidence 3445566 8999999999999 799999999999 999998764432211110000 0000000011110 00
Q ss_pred CCc-cEEEEeecCCeEEEEEcC----CccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeecc
Q 017553 96 DGI-PFLVAGGINGIIRVIDVS----NEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGA 170 (369)
Q Consensus 96 ~g~-~~l~~~~~dg~i~vwd~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 170 (369)
.++ ...-.+.....+ +.+.. ..++++.+.+|.+.|.+|.|+. +++|++++.|.+||+|++...+++..|.
T Consensus 333 ~~~~s~~~~~~~s~~~-~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL~~F~-- 407 (712)
T KOG0283|consen 333 SSRTSSSRKGSQSPCV-LLPLKAFVFSEKPFCEFKGHTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECLKVFS-- 407 (712)
T ss_pred cccccccccccCCccc-cCCCccccccccchhhhhccchhheeccccc--CCeeEeccccccEEeecCCCcceeeEEe--
Confidence 011 011122222222 22211 2467889999999999999996 6799999999999999999999999997
Q ss_pred CCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee-
Q 017553 171 GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL- 249 (369)
Q Consensus 171 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~- 249 (369)
|.+.|+|++|+|.|.++|++|+.|+.|+||++... .+.....-...|++++|.
T Consensus 408 --HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~------------------------~Vv~W~Dl~~lITAvcy~P 461 (712)
T KOG0283|consen 408 --HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDK------------------------KVVDWNDLRDLITAVCYSP 461 (712)
T ss_pred --cCCeeEEEEecccCCCcEeecccccceEEeecCcC------------------------eeEeehhhhhhheeEEecc
Confidence 99999999999999999999999999999999872 233333445789999996
Q ss_pred -CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeE
Q 017553 250 -GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLI 328 (369)
Q Consensus 250 -~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 328 (369)
|+..+.|+.+|..++|+....+........ .-..-+.....|+.+.|.|... ..+++.+.|.+|+|||..+.. ++
T Consensus 462 dGk~avIGt~~G~C~fY~t~~lk~~~~~~I~-~~~~Kk~~~~rITG~Q~~p~~~-~~vLVTSnDSrIRI~d~~~~~--lv 537 (712)
T KOG0283|consen 462 DGKGAVIGTFNGYCRFYDTEGLKLVSDFHIR-LHNKKKKQGKRITGLQFFPGDP-DEVLVTSNDSRIRIYDGRDKD--LV 537 (712)
T ss_pred CCceEEEEEeccEEEEEEccCCeEEEeeeEe-eccCccccCceeeeeEecCCCC-CeEEEecCCCceEEEeccchh--hh
Confidence 899999999999999999877632111000 0000111123799999998775 367778899999999997763 44
Q ss_pred EEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecC
Q 017553 329 ARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 329 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 367 (369)
.++........-....|+.||++|+++++|..|+||++.
T Consensus 538 ~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 538 HKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred hhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 455422222334567899999999999999999999974
No 51
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.7e-35 Score=216.17 Aligned_cols=270 Identities=20% Similarity=0.347 Sum_probs=219.7
Q ss_pred cccccccccccccccc-ccceeeeeec-ccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCC--ceeEEEeeec
Q 017553 4 TAIGCEPLVGSLTPSK-KREYRVTNKL-QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEG--GVIAALQSYV 78 (369)
Q Consensus 4 ~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~--~~~~~~~~~~ 78 (369)
.|+++.++..++.... ...+.++..+ .+|+..|.+++|+| .|++||+++-|. +.||.-..+ +.+..+.
T Consensus 30 lAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp----~g~~La~aSFD~t~~Iw~k~~~efecv~~lE--- 102 (312)
T KOG0645|consen 30 LASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSP----HGRYLASASFDATVVIWKKEDGEFECVATLE--- 102 (312)
T ss_pred EEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecC----CCcEEEEeeccceEEEeecCCCceeEEeeee---
Confidence 4555666665555444 4568888777 48999999999999 799999999999 999985433 3445555
Q ss_pred cCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCc---cccceeeccccceEEEEecCCCCceEEEEeCCCcEEE
Q 017553 79 DEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE---KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRL 155 (369)
Q Consensus 79 ~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~v 155 (369)
.|+.+|.+++|+ ++|. +||+++.|..|-||.+..+ ++...+..|+..|..+.|+| ...+|++++.|.+|++
T Consensus 103 --GHEnEVK~Vaws--~sG~-~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP-t~dlL~S~SYDnTIk~ 176 (312)
T KOG0645|consen 103 --GHENEVKCVAWS--ASGN-YLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP-TEDLLFSCSYDNTIKV 176 (312)
T ss_pred --ccccceeEEEEc--CCCC-EEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC-CcceeEEeccCCeEEE
Confidence 689999999999 8899 9999999999999998754 46788899999999999999 8899999999999999
Q ss_pred EEccCC---cEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecc
Q 017553 156 WNVQTG---ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP 232 (369)
Q Consensus 156 wd~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (369)
|+-..+ .+++++. +|...|.+++|++ .+..|++++.|++++||.....
T Consensus 177 ~~~~~dddW~c~~tl~---g~~~TVW~~~F~~-~G~rl~s~sdD~tv~Iw~~~~~------------------------- 227 (312)
T KOG0645|consen 177 YRDEDDDDWECVQTLD---GHENTVWSLAFDN-IGSRLVSCSDDGTVSIWRLYTD------------------------- 227 (312)
T ss_pred EeecCCCCeeEEEEec---CccceEEEEEecC-CCceEEEecCCcceEeeeeccC-------------------------
Confidence 987733 4677777 8999999999999 8899999999999999987651
Q ss_pred eeeeccCCCceeeeeeeCcEEEEeecCCeEEEecCCCCCCCCCCCccce-eeeccCCCCCeeEEEEeecCCccEEEEecC
Q 017553 233 VFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADI-LQKYPVPECDIWFIKFSCDFHYNAAAIGNR 311 (369)
Q Consensus 233 ~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~ 311 (369)
....|...+..+.|....|++++.|+.|++|.-...-..+ .... ......|...|++++|.|..+ +.|++|+.
T Consensus 228 --~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p---~~~l~~~~~~aHe~dVNsV~w~p~~~-~~L~s~~D 301 (312)
T KOG0645|consen 228 --LSGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEP---SWNLLAKKEGAHEVDVNSVQWNPKVS-NRLASGGD 301 (312)
T ss_pred --cchhcccceEeeeecccceEeccCCCEEEEEEecCCCCCc---hHHHHHhhhcccccccceEEEcCCCC-CceeecCC
Confidence 1134778899999998899999999999999876431111 1112 234556788999999999544 58999999
Q ss_pred CCeEEEEEcc
Q 017553 312 EGKIFVWELQ 321 (369)
Q Consensus 312 dg~i~i~d~~ 321 (369)
||.|++|.+.
T Consensus 302 DG~v~~W~l~ 311 (312)
T KOG0645|consen 302 DGIVNFWELE 311 (312)
T ss_pred CceEEEEEec
Confidence 9999999864
No 52
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=7.5e-36 Score=223.46 Aligned_cols=248 Identities=19% Similarity=0.291 Sum_probs=211.0
Q ss_pred cCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcC-CccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEE
Q 017553 79 DEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVS-NEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN 157 (369)
Q Consensus 79 ~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd 157 (369)
.+.|++.|+.+.|. |+|. ++++|+.|..|.+|++. ..+-...+++|.++|..+.|.+ +++.+++++.|.+|+.||
T Consensus 43 l~gh~geI~~~~F~--P~gs-~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~-d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFH--PDGS-CFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMR-DGSHILSCGTDKTVRGWD 118 (338)
T ss_pred cCCCcceEEEEEEC--CCCC-eEeecCCcceEEEEeccccccceeeeccccceeEeeeecc-CCCEEEEecCCceEEEEe
Confidence 34799999999998 8999 99999999999999964 3455778889999999999999 999999999999999999
Q ss_pred ccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeec
Q 017553 158 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS 237 (369)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (369)
+++|++++.++ +|..-|+.+.-+..+..++.+++.|+++++||+|+. ..+..+
T Consensus 119 ~~tG~~~rk~k---~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k-----------------------~~~~t~- 171 (338)
T KOG0265|consen 119 AETGKRIRKHK---GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK-----------------------EAIKTF- 171 (338)
T ss_pred cccceeeehhc---cccceeeecCccccCCeEEEecCCCceEEEEeeccc-----------------------chhhcc-
Confidence 99999999999 799999999866657788899999999999999972 222222
Q ss_pred cCCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeE
Q 017553 238 VHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKI 315 (369)
Q Consensus 238 ~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i 315 (369)
...-.++++.|. ++.+.+|+-|+.|++||++..+ .+..+.+|...|+.+..++++. ++.+-+.|.++
T Consensus 172 ~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d---------~~~~lsGh~DtIt~lsls~~gs--~llsnsMd~tv 240 (338)
T KOG0265|consen 172 ENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKND---------GLYTLSGHADTITGLSLSRYGS--FLLSNSMDNTV 240 (338)
T ss_pred ccceeEEEEEecccccceeeccccCceeeeccccCc---------ceEEeecccCceeeEEeccCCC--ccccccccceE
Confidence 235568888886 7899999999999999999877 7889999999999999999997 89999999999
Q ss_pred EEEEccCCCc--eeEEEeecCCCc--cceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 316 FVWELQSSPP--VLIARLSHAQSK--SPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 316 ~i~d~~~~~~--~~~~~~~~~~~~--~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
++||++...+ ..+..+....|. -....++|+|+++.+..|+.|..+++||...
T Consensus 241 rvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 241 RVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTS 297 (338)
T ss_pred EEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeeccc
Confidence 9999986433 234445422333 3356789999999999999999999999753
No 53
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=4.9e-35 Score=250.18 Aligned_cols=274 Identities=22% Similarity=0.345 Sum_probs=237.7
Q ss_pred CCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEE-EeeeccCCcccceeEEEeeecCCCccEEEEeecCCe
Q 017553 32 GKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAA-LQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGI 109 (369)
Q Consensus 32 h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~ 109 (369)
+...+.+..|.+ .++++++.++ |++|+..++..+.. +. .|.+.|.++++. . +..+|++|+.|.+
T Consensus 207 ~~~~~~~~q~~~------~~~~~~s~~~tl~~~~~~~~~~i~~~l~-----GH~g~V~~l~~~--~-~~~~lvsgS~D~t 272 (537)
T KOG0274|consen 207 DDHVVLCLQLHD------GFFKSGSDDSTLHLWDLNNGYLILTRLV-----GHFGGVWGLAFP--S-GGDKLVSGSTDKT 272 (537)
T ss_pred Ccchhhhheeec------CeEEecCCCceeEEeecccceEEEeecc-----CCCCCceeEEEe--c-CCCEEEEEecCCc
Confidence 567788999885 6788888888 99999998888777 66 689999999995 3 4449999999999
Q ss_pred EEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceE
Q 017553 110 IRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYR 189 (369)
Q Consensus 110 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 189 (369)
+++||..++++...+.+|.+.|.++...+ ..+++|+.|.+|++|+++++..+..+. +|.++|.++..+ +.+
T Consensus 273 ~rvWd~~sg~C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~---~h~~~V~~v~~~---~~~ 343 (537)
T KOG0274|consen 273 ERVWDCSTGECTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACLNLLR---GHTGPVNCVQLD---EPL 343 (537)
T ss_pred EEeEecCCCcEEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceEEEec---cccccEEEEEec---CCE
Confidence 99999999999999999999999999865 678899999999999999999999998 799999999996 578
Q ss_pred EEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeeeC-cEEEEeecCCeEEEecCC
Q 017553 190 IASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLG-DFILSKSVDNEIVLWEPK 268 (369)
Q Consensus 190 l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~d~~i~i~d~~ 268 (369)
+++|+.|++|++||+.+ ...+..+.+|...|.++.+++ +.+++|+.|+.|++||++
T Consensus 344 lvsgs~d~~v~VW~~~~-----------------------~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~ 400 (537)
T KOG0274|consen 344 LVSGSYDGTVKVWDPRT-----------------------GKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLR 400 (537)
T ss_pred EEEEecCceEEEEEhhh-----------------------ceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCC
Confidence 99999999999999998 567889999999999999998 999999999999999999
Q ss_pred CCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCC
Q 017553 269 MKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYD 348 (369)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 348 (369)
+.. .++..+..|...+..+.+.. ++|++++.|+.|++||..+++ ....+... |.+.|..+++.
T Consensus 401 ~~~--------~c~~tl~~h~~~v~~l~~~~----~~Lvs~~aD~~Ik~WD~~~~~--~~~~~~~~-~~~~v~~l~~~-- 463 (537)
T KOG0274|consen 401 TKR--------KCIHTLQGHTSLVSSLLLRD----NFLVSSSADGTIKLWDAEEGE--CLRTLEGR-HVGGVSALALG-- 463 (537)
T ss_pred chh--------hhhhhhcCCccccccccccc----ceeEeccccccEEEeecccCc--eeeeeccC-CcccEEEeecC--
Confidence 882 17888888887776655543 389999999999999999984 45555521 56888888886
Q ss_pred CCEEEEeecCCeEEEEecCC
Q 017553 349 GSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 349 ~~~l~s~~~dg~i~vw~~~~ 368 (369)
...+++++.||.+++||+.+
T Consensus 464 ~~~il~s~~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 464 KEEILCSSDDGSVKLWDLRS 483 (537)
T ss_pred cceEEEEecCCeeEEEeccc
Confidence 46788899999999999875
No 54
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.1e-36 Score=219.82 Aligned_cols=255 Identities=19% Similarity=0.358 Sum_probs=214.2
Q ss_pred cceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCC-ceeEEEeeeccCCcccceeEEEeeecCCCc
Q 017553 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEG-GVIAALQSYVDEDKEESFYTVSWACNVDGI 98 (369)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~ 98 (369)
+.......+ .-++.++.++|++. ..+.++++++|+ ++|||.... .++..++ .|+.+|+++.|. +..+
T Consensus 49 ~gi~e~~s~-d~~D~LfdV~Wse~---~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~k-----EH~~EV~Svdwn--~~~r 117 (311)
T KOG0277|consen 49 KGIQECQSY-DTEDGLFDVAWSEN---HENQVIAASGDGSLRLFDLTMPSKPIHKFK-----EHKREVYSVDWN--TVRR 117 (311)
T ss_pred CCeEEEEee-ecccceeEeeecCC---CcceEEEEecCceEEEeccCCCCcchhHHH-----hhhhheEEeccc--cccc
Confidence 334444444 34678999999995 467788888887 999995432 2333344 689999999998 6555
Q ss_pred cEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEE
Q 017553 99 PFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVL 178 (369)
Q Consensus 99 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~ 178 (369)
..+++++.||+|++|+...++.++++.+|...|...+|+|..++++++++.|+.+++||++.......+. .|...|.
T Consensus 118 ~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~---ah~~Eil 194 (311)
T KOG0277|consen 118 RIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIE---AHNSEIL 194 (311)
T ss_pred eeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEE---eccceeE
Confidence 5788889999999999999999999999999999999999999999999999999999998755444466 6999999
Q ss_pred EEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee---CcEEEE
Q 017553 179 SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILS 255 (369)
Q Consensus 179 ~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~ 255 (369)
++.|+..+.++++||+.|+.|+.||++.. ..|+..+.+|.-.|+.+.|+ ...|++
T Consensus 195 ~cdw~ky~~~vl~Tg~vd~~vr~wDir~~----------------------r~pl~eL~gh~~AVRkvk~Sph~~~lLaS 252 (311)
T KOG0277|consen 195 CCDWSKYNHNVLATGGVDNLVRGWDIRNL----------------------RTPLFELNGHGLAVRKVKFSPHHASLLAS 252 (311)
T ss_pred eecccccCCcEEEecCCCceEEEEehhhc----------------------cccceeecCCceEEEEEecCcchhhHhhh
Confidence 99999989999999999999999999983 45788889999999999998 558999
Q ss_pred eecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEc
Q 017553 256 KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL 320 (369)
Q Consensus 256 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~ 320 (369)
++.|-+++|||...+.. .+.++..|..-+..+.||+... .++|+.+.|+.++||+.
T Consensus 253 asYDmT~riw~~~~~ds--------~~e~~~~HtEFv~g~Dws~~~~-~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 253 ASYDMTVRIWDPERQDS--------AIETVDHHTEFVCGLDWSLFDP-GQVASTGWDELLYVWNP 308 (311)
T ss_pred ccccceEEecccccchh--------hhhhhhccceEEeccccccccC-ceeeecccccceeeecc
Confidence 99999999999986653 5667777888888899998744 59999999999999984
No 55
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.6e-36 Score=245.15 Aligned_cols=244 Identities=18% Similarity=0.256 Sum_probs=224.5
Q ss_pred cccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCC
Q 017553 82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG 161 (369)
Q Consensus 82 ~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~ 161 (369)
+...|.++.+. |... +++++-.+|.|.|||.++...++.+.-..-+|.+..|-+ ..+.+++|+.|..|++|+..++
T Consensus 12 rSdRVKsVd~H--PteP-w~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfia-RknWiv~GsDD~~IrVfnynt~ 87 (794)
T KOG0276|consen 12 RSDRVKSVDFH--PTEP-WILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIA-RKNWIVTGSDDMQIRVFNYNTG 87 (794)
T ss_pred cCCceeeeecC--CCCc-eEEEeeecCeeEEEecccceeeeeeeecccchhhheeee-ccceEEEecCCceEEEEecccc
Confidence 66788888887 7776 999999999999999999999999998899999999999 8899999999999999999999
Q ss_pred cEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCC
Q 017553 162 ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN 241 (369)
Q Consensus 162 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (369)
+.+..+. +|.+.|.+++.+| ...++++++.|-+|++||.+.. -...+.+.+|..
T Consensus 88 ekV~~Fe---AH~DyIR~iavHP-t~P~vLtsSDDm~iKlW~we~~----------------------wa~~qtfeGH~H 141 (794)
T KOG0276|consen 88 EKVKTFE---AHSDYIRSIAVHP-TLPYVLTSSDDMTIKLWDWENE----------------------WACEQTFEGHEH 141 (794)
T ss_pred eeeEEee---ccccceeeeeecC-CCCeEEecCCccEEEEeeccCc----------------------eeeeeEEcCcce
Confidence 9999999 8999999999999 7888999999999999999984 345678899999
Q ss_pred ceeeeeee---CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEE
Q 017553 242 YVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW 318 (369)
Q Consensus 242 ~v~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~ 318 (369)
.|++++|+ .+.+++++.|++|++|.+.+.. +..++.+|...|+++.+-+.+...+|++|+.|..|+||
T Consensus 142 yVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~---------~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvW 212 (794)
T KOG0276|consen 142 YVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH---------PNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVW 212 (794)
T ss_pred EEEEEEecCCCccceeeeeccccEEEEEcCCCC---------CceeeeccccCcceEEeccCCCcceEEecCCCceEEEe
Confidence 99999998 5699999999999999998776 67888899999999999998877899999999999999
Q ss_pred EccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 319 ELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 319 d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
|.++. .++.++. +|...|..+.|+|.-.++++|++||+++||+-.+
T Consensus 213 DyQtk--~CV~TLe--GHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~T 258 (794)
T KOG0276|consen 213 DYQTK--SCVQTLE--GHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKT 258 (794)
T ss_pred ecchH--HHHHHhh--cccccceEEEecCCCcEEEEecCCccEEEecCcc
Confidence 99998 4566777 9999999999999999999999999999998654
No 56
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-35 Score=223.93 Aligned_cols=299 Identities=17% Similarity=0.283 Sum_probs=255.3
Q ss_pred ccceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCc
Q 017553 20 KREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGI 98 (369)
Q Consensus 20 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~ 98 (369)
.-.+++++.+.||.+.|+.++-.. ...++.+++.|. -+||.++++.++..+. .|.+.|+++.|. +.+.
T Consensus 135 t~~~~lvre~~GHkDGiW~Vaa~~----tqpi~gtASADhTA~iWs~Esg~CL~~Y~-----GH~GSVNsikfh--~s~~ 203 (481)
T KOG0300|consen 135 TVKFRLVRELEGHKDGIWHVAADS----TQPICGTASADHTARIWSLESGACLATYT-----GHTGSVNSIKFH--NSGL 203 (481)
T ss_pred ceeEeehhhhcccccceeeehhhc----CCcceeecccccceeEEeeccccceeeec-----ccccceeeEEec--cccc
Confidence 346778888999999999999876 356899999999 9999999999999988 588999999998 7787
Q ss_pred cEEEEeecCCeEEEEEc------CC----------------------------------ccccceeeccccceEEEEecC
Q 017553 99 PFLVAGGINGIIRVIDV------SN----------------------------------EKLHKSFVGHGDSINEIRTQP 138 (369)
Q Consensus 99 ~~l~~~~~dg~i~vwd~------~~----------------------------------~~~~~~~~~~~~~v~~~~~~~ 138 (369)
++++++.|++-+||.. .. ..++..+.+|.+.|.+..|..
T Consensus 204 -L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~ 282 (481)
T KOG0300|consen 204 -LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA 282 (481)
T ss_pred -eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc
Confidence 9999999999999962 11 013456778999999999999
Q ss_pred CCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeecc
Q 017553 139 LKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWT 218 (369)
Q Consensus 139 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~ 218 (369)
+++.+++++.|.+..+||+++|+.+..+. +|....+.++-+| ..+++++.+.|.+.++||++..
T Consensus 283 -gg~Q~vTaSWDRTAnlwDVEtge~v~~Lt---GHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFRea----------- 346 (481)
T KOG0300|consen 283 -GGQQMVTASWDRTANLWDVETGEVVNILT---GHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREA----------- 346 (481)
T ss_pred -CcceeeeeeccccceeeeeccCceecccc---CcchhccccccCC-cceEEEEeccCceeEeccchhh-----------
Confidence 89999999999999999999999999998 8999999999999 9999999999999999999962
Q ss_pred CCCCCCCCceeecceeeeccCCCceeeeeee-CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEE
Q 017553 219 DLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKF 297 (369)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 297 (369)
...+..+.+|...|+++.|. ++.+++|+.|.+|++||+++... ++..+.. ..+++.++.
T Consensus 347 -----------I~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRs--------plATIRt-dS~~NRvav 406 (481)
T KOG0300|consen 347 -----------IQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRS--------PLATIRT-DSPANRVAV 406 (481)
T ss_pred -----------cceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccC--------cceeeec-CCccceeEe
Confidence 34577889999999999998 88999999999999999998764 4444443 367889999
Q ss_pred eecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCC--CEEEEeecCCeEEEEecCC
Q 017553 298 SCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDG--STILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 298 s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~s~~~dg~i~vw~~~~ 368 (369)
+..++ +++.--.+..|++||++......+..-...+|...|+|++|..+- .-|++++.|..+.=|+++.
T Consensus 407 s~g~~--iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 407 SKGHP--IIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred ecCCc--eEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecc
Confidence 98886 888888999999999998754333322355888999999998653 3578999999999999874
No 57
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=6.7e-37 Score=232.05 Aligned_cols=292 Identities=17% Similarity=0.223 Sum_probs=238.8
Q ss_pred eeeecc-cCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccC---CcccceeEEEeeecCCCcc
Q 017553 25 VTNKLQ-EGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDE---DKEESFYTVSWACNVDGIP 99 (369)
Q Consensus 25 ~~~~~~-~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~g~~ 99 (369)
+.+.++ +....+-|..||| ||++|++++.|+ |.+||..+|+..+.++-.... -+...|.|++|+ .|..
T Consensus 204 l~r~IKFg~KSh~EcA~FSP----DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FS--RDsE- 276 (508)
T KOG0275|consen 204 LARSIKFGQKSHVECARFSP----DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFS--RDSE- 276 (508)
T ss_pred hhhheecccccchhheeeCC----CCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeec--ccHH-
Confidence 334443 5677789999999 799999999999 999999998876655422111 356788888877 8888
Q ss_pred EEEEeecCCeEEEEEcCCccccceee-ccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEE
Q 017553 100 FLVAGGINGIIRVIDVSNEKLHKSFV-GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVL 178 (369)
Q Consensus 100 ~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~ 178 (369)
.|++|+.||.|++|.+.+|.+++.|. +|+..|+|+.|+. ++..+++++.|.++++--+.+|+++..++ +|...|+
T Consensus 277 MlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfr---GHsSyvn 352 (508)
T KOG0275|consen 277 MLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFR---GHSSYVN 352 (508)
T ss_pred HhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhc---Ccccccc
Confidence 99999999999999999999999997 8999999999999 88999999999999999999999999999 8999999
Q ss_pred EEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeee---eCcEEEE
Q 017553 179 SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW---LGDFILS 255 (369)
Q Consensus 179 ~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~ 255 (369)
...|.+ +|+.+++++.||+|++|+..+.+..... ...+..-+|.++-. ++..+++
T Consensus 353 ~a~ft~-dG~~iisaSsDgtvkvW~~KtteC~~Tf---------------------k~~~~d~~vnsv~~~PKnpeh~iV 410 (508)
T KOG0275|consen 353 EATFTD-DGHHIISASSDGTVKVWHGKTTECLSTF---------------------KPLGTDYPVNSVILLPKNPEHFIV 410 (508)
T ss_pred ceEEcC-CCCeEEEecCCccEEEecCcchhhhhhc---------------------cCCCCcccceeEEEcCCCCceEEE
Confidence 999998 9999999999999999999884321111 01112223333333 2678999
Q ss_pred eecCCeEEEecCCCCCCCCCCCccceeeeccC---CCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEee
Q 017553 256 KSVDNEIVLWEPKMKEQSPGEGTADILQKYPV---PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLS 332 (369)
Q Consensus 256 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 332 (369)
|...+++++.++... .++.+.. ..+...+.+.||.|. ++.+.++|+.++.|.+.+++ +...+.
T Consensus 411 CNrsntv~imn~qGQ----------vVrsfsSGkREgGdFi~~~lSpkGe--wiYcigED~vlYCF~~~sG~--LE~tl~ 476 (508)
T KOG0275|consen 411 CNRSNTVYIMNMQGQ----------VVRSFSSGKREGGDFINAILSPKGE--WIYCIGEDGVLYCFSVLSGK--LERTLP 476 (508)
T ss_pred EcCCCeEEEEeccce----------EEeeeccCCccCCceEEEEecCCCc--EEEEEccCcEEEEEEeecCc--eeeeee
Confidence 999999999998754 3444433 235667788999997 99999999999999999994 555565
Q ss_pred cCCCccceEEEEecCCCCEEEEeecCCeEEEEe
Q 017553 333 HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 365 (369)
Q Consensus 333 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~ 365 (369)
.|...|-.++-+|..++||+=+.||.+++|.
T Consensus 477 --VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 477 --VHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred --cccccccccccCcccchhhhhcccchhhhcC
Confidence 6667888999999999999999999999995
No 58
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.4e-34 Score=214.63 Aligned_cols=293 Identities=18% Similarity=0.266 Sum_probs=229.6
Q ss_pred cceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCcc
Q 017553 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIP 99 (369)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~ 99 (369)
+++++.+.++.....|+++.|++ +|+++++++.|. ++|||..++.+++.+.. ++-.+..++|. ....
T Consensus 2 ~s~~~ak~f~~~~~~i~sl~fs~----~G~~litss~dDsl~LYd~~~g~~~~ti~s-----kkyG~~~~~Ft--h~~~- 69 (311)
T KOG1446|consen 2 RSFRPAKVFRETNGKINSLDFSD----DGLLLITSSEDDSLRLYDSLSGKQVKTINS-----KKYGVDLACFT--HHSN- 69 (311)
T ss_pred cccccccccccCCCceeEEEecC----CCCEEEEecCCCeEEEEEcCCCceeeEeec-----ccccccEEEEe--cCCc-
Confidence 35677778888889999999999 689999988775 99999999999999884 55567778877 3333
Q ss_pred EEEEee--cCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcE
Q 017553 100 FLVAGG--INGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEV 177 (369)
Q Consensus 100 ~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v 177 (369)
.++.++ .|.+||..++.+.+.++.|.||...|++|+.+| .++.+++++.|++|++||++..++...+. ...-
T Consensus 70 ~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~-----~~~~ 143 (311)
T KOG1446|consen 70 TVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLN-----LSGR 143 (311)
T ss_pred eEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEe-----cCCC
Confidence 455444 488999999999999999999999999999999 77999999999999999999888877765 2233
Q ss_pred EEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEE
Q 017553 178 LSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILS 255 (369)
Q Consensus 178 ~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~ 255 (369)
...+|.| .|-++|++.....|++||+|...+.....+. ...........+.|+ |++++.
T Consensus 144 pi~AfDp-~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~------------------i~~~~~~ew~~l~FS~dGK~iLl 204 (311)
T KOG1446|consen 144 PIAAFDP-EGLIFALANGSELIKLYDLRSFDKGPFTTFS------------------ITDNDEAEWTDLEFSPDGKSILL 204 (311)
T ss_pred cceeECC-CCcEEEEecCCCeEEEEEecccCCCCceeEc------------------cCCCCccceeeeEEcCCCCEEEE
Confidence 4588999 8898999888889999999984322111111 011335667788887 899999
Q ss_pred eecCCeEEEecCCCCCCCCCCCccceeeeccCCC---CCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEee
Q 017553 256 KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPE---CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLS 332 (369)
Q Consensus 256 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 332 (369)
+...+.+++.|.-++. .+..+..+. ..-....|+||++ ++++|+.||+|.+|+++++. .+..+.
T Consensus 205 sT~~s~~~~lDAf~G~---------~~~tfs~~~~~~~~~~~a~ftPds~--Fvl~gs~dg~i~vw~~~tg~--~v~~~~ 271 (311)
T KOG1446|consen 205 STNASFIYLLDAFDGT---------VKSTFSGYPNAGNLPLSATFTPDSK--FVLSGSDDGTIHVWNLETGK--KVAVLR 271 (311)
T ss_pred EeCCCcEEEEEccCCc---------EeeeEeeccCCCCcceeEEECCCCc--EEEEecCCCcEEEEEcCCCc--EeeEec
Confidence 9999999999998886 334333332 2225778999997 99999999999999999984 455555
Q ss_pred cCCCccceEEEEecCCCCEEEEeecCCeEEEEec
Q 017553 333 HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 366 (369)
Q Consensus 333 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~ 366 (369)
. .+.+++.++.|+|.-.++++++ ..+.+|=.
T Consensus 272 ~-~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p 302 (311)
T KOG1446|consen 272 G-PNGGPVSCVRFNPRYAMFVSAS--SNLVFWLP 302 (311)
T ss_pred C-CCCCCccccccCCceeeeeecC--ceEEEEec
Confidence 2 2678999999999988888765 45777743
No 59
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.6e-34 Score=247.99 Aligned_cols=244 Identities=25% Similarity=0.418 Sum_probs=208.9
Q ss_pred CcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCcc--ccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEc
Q 017553 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK--LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 158 (369)
Q Consensus 81 ~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~ 158 (369)
.+...|.++.|+ ++|+ .+++++.++.+++|+....+ ..+.+.+|...|.+++|+| ++.++++++.|++|++||+
T Consensus 157 ~~~~sv~~~~fs--~~g~-~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~-d~~~l~s~s~D~tiriwd~ 232 (456)
T KOG0266|consen 157 HECPSVTCVDFS--PDGR-ALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSP-DGSYLLSGSDDKTLRIWDL 232 (456)
T ss_pred cccCceEEEEEc--CCCC-eEEEccCCCcEEEeecccccchhhccccccccceeeeEECC-CCcEEEEecCCceEEEeec
Confidence 346788887777 9999 89999999999999997777 7788889999999999999 8999999999999999999
Q ss_pred -cCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeec
Q 017553 159 -QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS 237 (369)
Q Consensus 159 -~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (369)
..+..++.+. +|...|++++|+| .++++++|+.|++|++||+++ ..+...+.
T Consensus 233 ~~~~~~~~~l~---gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~-----------------------~~~~~~l~ 285 (456)
T KOG0266|consen 233 KDDGRNLKTLK---GHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRT-----------------------GECVRKLK 285 (456)
T ss_pred cCCCeEEEEec---CCCCceEEEEecC-CCCEEEEecCCCcEEEEeccC-----------------------CeEEEeee
Confidence 5558888888 8999999999999 669999999999999999998 45788899
Q ss_pred cCCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCC--CeeEEEEeecCCccEEEEecCCC
Q 017553 238 VHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPEC--DIWFIKFSCDFHYNAAAIGNREG 313 (369)
Q Consensus 238 ~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~s~~~~~~~l~~~~~dg 313 (369)
+|...|.+++|+ +.++++++.|+.|++||+.++... ++..+..+.. .++.+.|+|++. +++++..|+
T Consensus 286 ~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~-------~~~~~~~~~~~~~~~~~~fsp~~~--~ll~~~~d~ 356 (456)
T KOG0266|consen 286 GHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL-------CLKLLSGAENSAPVTSVQFSPNGK--YLLSASLDR 356 (456)
T ss_pred ccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee-------eeecccCCCCCCceeEEEECCCCc--EEEEecCCC
Confidence 999999999997 889999999999999999988631 1233333333 589999999997 999999999
Q ss_pred eEEEEEccCCCceeEEEeecCCCcc---ceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 314 KIFVWELQSSPPVLIARLSHAQSKS---PIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 314 ~i~i~d~~~~~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
.+++||+..+.. ...+. +|.. .+.+...++.+.++++|+.|+.|++|++.+
T Consensus 357 ~~~~w~l~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s 410 (456)
T KOG0266|consen 357 TLKLWDLRSGKS--VGTYT--GHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSS 410 (456)
T ss_pred eEEEEEccCCcc--eeeec--ccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCc
Confidence 999999998853 33333 3333 455566678999999999999999999874
No 60
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-35 Score=250.99 Aligned_cols=252 Identities=20% Similarity=0.360 Sum_probs=219.5
Q ss_pred cccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCC
Q 017553 82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG 161 (369)
Q Consensus 82 ~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~ 161 (369)
....|..++|. |... +++++-.+|.|++||.+-+.++..|..|.++|..++|+| ...++++|+.|-.|++|+..+.
T Consensus 8 kSsRvKglsFH--P~rP-wILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~-~qplFVSGGDDykIkVWnYk~r 83 (1202)
T KOG0292|consen 8 KSSRVKGLSFH--PKRP-WILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHP-TQPLFVSGGDDYKIKVWNYKTR 83 (1202)
T ss_pred ccccccceecC--CCCC-EEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecC-CCCeEEecCCccEEEEEecccc
Confidence 44566667776 7766 999999999999999999999999999999999999999 8899999999999999999999
Q ss_pred cEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCC
Q 017553 162 ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN 241 (369)
Q Consensus 162 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (369)
+++.++. +|-+.|..+.|++ .-..+++++.|.+|+||+..+ ...+..+.+|..
T Consensus 84 rclftL~---GHlDYVRt~~FHh-eyPWIlSASDDQTIrIWNwqs-----------------------r~~iavltGHnH 136 (1202)
T KOG0292|consen 84 RCLFTLL---GHLDYVRTVFFHH-EYPWILSASDDQTIRIWNWQS-----------------------RKCIAVLTGHNH 136 (1202)
T ss_pred eehhhhc---cccceeEEeeccC-CCceEEEccCCCeEEEEeccC-----------------------CceEEEEecCce
Confidence 9999998 8999999999998 888999999999999999999 567889999999
Q ss_pred ceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCC--------------------ccceeeeccCCCCCeeEEEEee
Q 017553 242 YVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEG--------------------TADILQKYPVPECDIWFIKFSC 299 (369)
Q Consensus 242 ~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~--------------------~~~~~~~~~~~~~~i~~~~~s~ 299 (369)
.|.|..|. .+.+++++-|-+||+||+...+.....+ ..-....+.+|...|+.++|+|
T Consensus 137 YVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp 216 (1202)
T KOG0292|consen 137 YVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP 216 (1202)
T ss_pred EEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC
Confidence 99999998 5799999999999999987544321110 1112245678889999999999
Q ss_pred cCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 300 DFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 300 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
.-+ ++++|+.|..|++|..+..+.-.+.... +|.+.|+++-|+|...++++.|+|+.|+|||+..
T Consensus 217 Tlp--liVSG~DDRqVKlWrmnetKaWEvDtcr--gH~nnVssvlfhp~q~lIlSnsEDksirVwDm~k 281 (1202)
T KOG0292|consen 217 TLP--LIVSGADDRQVKLWRMNETKAWEVDTCR--GHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTK 281 (1202)
T ss_pred Ccc--eEEecCCcceeeEEEeccccceeehhhh--cccCCcceEEecCccceeEecCCCccEEEEeccc
Confidence 886 9999999999999999887543333333 9999999999999999999999999999999863
No 61
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=5.4e-34 Score=209.54 Aligned_cols=287 Identities=16% Similarity=0.189 Sum_probs=242.7
Q ss_pred eecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEee
Q 017553 27 NKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG 105 (369)
Q Consensus 27 ~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~ 105 (369)
+.+++|.+.|.+|+|+- +|..||+++.|+ +.+|++..++....+ ....|...|-.++|. |.....+++++
T Consensus 14 r~~~~~~~~v~Sv~wn~----~g~~lasgs~dktv~v~n~e~~r~~~~~---~~~gh~~svdql~w~--~~~~d~~atas 84 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNC----DGTKLASGSFDKTVSVWNLERDRFRKEL---VYRGHTDSVDQLCWD--PKHPDLFATAS 84 (313)
T ss_pred HHhhhhhhcceEEEEcc----cCceeeecccCCceEEEEecchhhhhhh---cccCCCcchhhheeC--CCCCcceEEec
Confidence 55789999999999999 799999999999 999999877544333 334688889999998 55555899999
Q ss_pred cCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCC
Q 017553 106 INGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS 185 (369)
Q Consensus 106 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 185 (369)
.|.+|++||++.+++...+....+.| -+.|+| ++++++.++.|..|.+.|.++.+.....+ ....+..++|+-
T Consensus 85 ~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp-~g~~~~~~~kdD~it~id~r~~~~~~~~~----~~~e~ne~~w~~- 157 (313)
T KOG1407|consen 85 GDKTIRIWDIRSGKCTARIETKGENI-NITWSP-DGEYIAVGNKDDRITFIDARTYKIVNEEQ----FKFEVNEISWNN- 157 (313)
T ss_pred CCceEEEEEeccCcEEEEeeccCcce-EEEEcC-CCCEEEEecCcccEEEEEecccceeehhc----ccceeeeeeecC-
Confidence 99999999999999998887555554 578999 89999999999999999999988777765 667788899985
Q ss_pred CceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEE
Q 017553 186 DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIV 263 (369)
Q Consensus 186 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~ 263 (369)
++++++.....|.|.|..... .+|+..+..|+....|+.|+ |+++++|+.|..+.
T Consensus 158 ~nd~Fflt~GlG~v~ILsyps-----------------------Lkpv~si~AH~snCicI~f~p~GryfA~GsADAlvS 214 (313)
T KOG1407|consen 158 SNDLFFLTNGLGCVEILSYPS-----------------------LKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVS 214 (313)
T ss_pred CCCEEEEecCCceEEEEeccc-----------------------cccccccccCCcceEEEEECCCCceEeeccccceee
Confidence 667666666679999988876 56889999999999999998 89999999999999
Q ss_pred EecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEE
Q 017553 264 LWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQT 343 (369)
Q Consensus 264 i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~ 343 (369)
+||+...- +++.+.-+.-+|..+.||.+|+ +||++++|..|-|=+++++. .+.+++ +.++-..+
T Consensus 215 LWD~~ELi---------C~R~isRldwpVRTlSFS~dg~--~lASaSEDh~IDIA~vetGd--~~~eI~---~~~~t~tV 278 (313)
T KOG1407|consen 215 LWDVDELI---------CERCISRLDWPVRTLSFSHDGR--MLASASEDHFIDIAEVETGD--RVWEIP---CEGPTFTV 278 (313)
T ss_pred ccChhHhh---------hheeeccccCceEEEEeccCcc--eeeccCccceEEeEecccCC--eEEEee---ccCCceeE
Confidence 99998654 6677777788999999999997 99999999999999999995 455553 44789999
Q ss_pred EecCCCCEEEEeecC---------CeEEEEecCC
Q 017553 344 AMSYDGSTILSCCED---------GAIWRWDAIP 368 (369)
Q Consensus 344 ~~s~~~~~l~s~~~d---------g~i~vw~~~~ 368 (369)
+|+|...+||-++.| |.|++|-+.+
T Consensus 279 AWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~~ 312 (313)
T KOG1407|consen 279 AWHPKRPLLAYACDDKDGDSNREAGTVKIFGLSN 312 (313)
T ss_pred EecCCCceeeEEecCCCCccccccceeEEecCCC
Confidence 999999999988754 6788887765
No 62
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5.8e-33 Score=200.34 Aligned_cols=309 Identities=17% Similarity=0.217 Sum_probs=236.7
Q ss_pred cccceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCC----------ceeEEEeeeccCCccccee
Q 017553 19 KKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEG----------GVIAALQSYVDEDKEESFY 87 (369)
Q Consensus 19 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~----------~~~~~~~~~~~~~~~~~v~ 87 (369)
+++.|..+..| .....|.+++|+| .|.+.|.|+..+ .+|.-...- .....+.......|.+.|+
T Consensus 19 ~k~~f~~i~~l-~dsqairav~fhp----~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiy 93 (350)
T KOG0641|consen 19 EKKHFEAINIL-EDSQAIRAVAFHP----AGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIY 93 (350)
T ss_pred cccceEEEEEe-cchhheeeEEecC----CCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEE
Confidence 45667777666 4567899999999 689999999888 766544311 1111222233447899999
Q ss_pred EEEeeecCCCccEEEEeecCCeEEEEEcCCccc-----cceeeccccceEEEEecCC---CCceEEEEe-CCCcEEEEEc
Q 017553 88 TVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL-----HKSFVGHGDSINEIRTQPL---KPSLVVSAS-KDESVRLWNV 158 (369)
Q Consensus 88 ~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~-----~~~~~~~~~~v~~~~~~~~---~~~~l~s~~-~dg~i~vwd~ 158 (369)
|.+|+ |.|+ ++++|+.|.+|++.-++...+ -.++..|.+.|..++|..+ .+.+|++++ .|..|++-|.
T Consensus 94 c~~ws--~~ge-liatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc 170 (350)
T KOG0641|consen 94 CTAWS--PCGE-LIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDC 170 (350)
T ss_pred EEEec--CccC-eEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeec
Confidence 99999 9999 999999999999987654432 2456779999999999652 344677765 4788999999
Q ss_pred cCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeecc
Q 017553 159 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV 238 (369)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (369)
..|+..+.+. +|.+.|.++--- ++.++++|+.|.+|++||++-........ .....-..
T Consensus 171 ~~g~~~~a~s---ghtghilalysw--n~~m~~sgsqdktirfwdlrv~~~v~~l~----------------~~~~~~gl 229 (350)
T KOG0641|consen 171 GRGQGFHALS---GHTGHILALYSW--NGAMFASGSQDKTIRFWDLRVNSCVNTLD----------------NDFHDGGL 229 (350)
T ss_pred CCCCcceeec---CCcccEEEEEEe--cCcEEEccCCCceEEEEeeeccceeeecc----------------CcccCCCc
Confidence 9999999888 899999887432 67899999999999999999732211100 00000111
Q ss_pred CCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEE
Q 017553 239 HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF 316 (369)
Q Consensus 239 ~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~ 316 (369)
....|.+++.+ |.++++|..|....+||++.++ +++.+..|...|.++.|||... ++++++.|..|+
T Consensus 230 essavaav~vdpsgrll~sg~~dssc~lydirg~r---------~iq~f~phsadir~vrfsp~a~--yllt~syd~~ik 298 (350)
T KOG0641|consen 230 ESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGR---------MIQRFHPHSADIRCVRFSPGAH--YLLTCSYDMKIK 298 (350)
T ss_pred ccceeEEEEECCCcceeeeccCCCceEEEEeeCCc---------eeeeeCCCccceeEEEeCCCce--EEEEecccceEE
Confidence 23556777665 8899999999999999999887 7999999999999999999986 999999999999
Q ss_pred EEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecC
Q 017553 317 VWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 317 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 367 (369)
+-|++..-...+..+....|...+..+.|+|..--+++.+.|.++.+|-+.
T Consensus 299 ltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 299 LTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 999986532222222233777889999999999889999999999999875
No 63
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=3.4e-34 Score=220.08 Aligned_cols=269 Identities=19% Similarity=0.268 Sum_probs=221.0
Q ss_pred cccccccccccccccccccceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCC
Q 017553 3 RTAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDED 81 (369)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~ 81 (369)
-+|+|+++...-+......+ ....+.+|++.|+|+.||- +|.+||||+.++ |+||...++.....+. .
T Consensus 78 l~aTGGgDD~AflW~~~~ge--~~~eltgHKDSVt~~~Fsh----dgtlLATGdmsG~v~v~~~stg~~~~~~~-----~ 146 (399)
T KOG0296|consen 78 LVATGGGDDLAFLWDISTGE--FAGELTGHKDSVTCCSFSH----DGTLLATGDMSGKVLVFKVSTGGEQWKLD-----Q 146 (399)
T ss_pred eEEecCCCceEEEEEccCCc--ceeEecCCCCceEEEEEcc----CceEEEecCCCccEEEEEcccCceEEEee-----c
Confidence 46778887776666544444 5566889999999999999 799999999999 9999999988777765 2
Q ss_pred cccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCC
Q 017553 82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG 161 (369)
Q Consensus 82 ~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~ 161 (369)
.-..+--+.|. |.+. +|++|+.||.+-+|.+.++...+.+.+|+.++++=.|.| +++.++++..||+|++||+.++
T Consensus 147 e~~dieWl~WH--p~a~-illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~p-dGKr~~tgy~dgti~~Wn~ktg 222 (399)
T KOG0296|consen 147 EVEDIEWLKWH--PRAH-ILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIP-DGKRILTGYDDGTIIVWNPKTG 222 (399)
T ss_pred ccCceEEEEec--cccc-EEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccC-CCceEEEEecCceEEEEecCCC
Confidence 33455667777 8887 999999999999999999888999999999999999999 8999999999999999999999
Q ss_pred cEEEEeeccC------------------------------------------------CCCCcEEEEEecCC--CceEEE
Q 017553 162 ICILIFAGAG------------------------------------------------GHRNEVLSVDFHPS--DIYRIA 191 (369)
Q Consensus 162 ~~~~~~~~~~------------------------------------------------~~~~~v~~~~~~~~--~~~~l~ 191 (369)
+++..+.... .+...+.++.+.|. .-.+.+
T Consensus 223 ~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A 302 (399)
T KOG0296|consen 223 QPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAA 302 (399)
T ss_pred ceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhh
Confidence 9888776211 11222223333221 234567
Q ss_pred EEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeeeC-cEEEEeecCCeEEEecCCCC
Q 017553 192 SCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLG-DFILSKSVDNEIVLWEPKMK 270 (369)
Q Consensus 192 ~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~d~~i~i~d~~~~ 270 (369)
+|+.||+|.|||+.. ..++....|+..|..+.|.+ .+|++++.+|.|+.||.+++
T Consensus 303 ~G~vdG~i~iyD~a~------------------------~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG 358 (399)
T KOG0296|consen 303 CGSVDGTIAIYDLAA------------------------STLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTG 358 (399)
T ss_pred cccccceEEEEeccc------------------------chhheeccCCCceEEEEEcCcchheeeccCceEEeeecccc
Confidence 778888888888876 23455667899999999985 89999999999999999999
Q ss_pred CCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEcc
Q 017553 271 EQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ 321 (369)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~ 321 (369)
+ ++..+.+|...|..++++|+.+ ++++++.|+..+||++.
T Consensus 359 ~---------l~~~y~GH~~~Il~f~ls~~~~--~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 359 Q---------LKFTYTGHQMGILDFALSPQKR--LVVTVSDDNTALVFEVP 398 (399)
T ss_pred c---------eEEEEecCchheeEEEEcCCCc--EEEEecCCCeEEEEecC
Confidence 8 7999999999999999999996 99999999999999864
No 64
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.5e-34 Score=227.12 Aligned_cols=297 Identities=19% Similarity=0.271 Sum_probs=236.1
Q ss_pred eecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeE-EEee------e----c-c-CCcccceeEEEee
Q 017553 27 NKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIA-ALQS------Y----V-D-EDKEESFYTVSWA 92 (369)
Q Consensus 27 ~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~-~~~~------~----~-~-~~~~~~v~~~~~~ 92 (369)
..+..|..+|.+++++| +..+..+++.++ |.=|+..++.... .++. + . . ..|...+.+++.+
T Consensus 136 ~~~~~H~~s~~~vals~----d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS 211 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSP----DDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVS 211 (479)
T ss_pred eeeccccCcceEEEeec----cccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEc
Confidence 34578999999999999 578999999999 9999998887541 1111 1 0 1 2566778888887
Q ss_pred ecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCC
Q 017553 93 CNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGG 172 (369)
Q Consensus 93 ~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 172 (369)
+||+ +|++|+.|..|.||+..+.+.++.+++|.+.|.+++|-. +.+.+++++.|.+|++|+++....+.++. +
T Consensus 212 --~Dgk-ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~s~vetly---G 284 (479)
T KOG0299|consen 212 --SDGK-YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQLSYVETLY---G 284 (479)
T ss_pred --CCCc-EEEecCCCceEEEecCcccchhhcccccccceeeeeeec-CccceeeeecCCceEEEehhHhHHHHHHh---C
Confidence 9999 999999999999999999999999999999999999998 88899999999999999999888887777 8
Q ss_pred CCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee-Cc
Q 017553 173 HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GD 251 (369)
Q Consensus 173 ~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~ 251 (369)
|.+.|.++.... -++.+-+|+.|+++++|++.. .....+.++.+.+.|++|- ..
T Consensus 285 Hqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~e------------------------esqlifrg~~~sidcv~~In~~ 339 (479)
T KOG0299|consen 285 HQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPE------------------------ESQLIFRGGEGSIDCVAFINDE 339 (479)
T ss_pred Cccceeeechhc-ccceEEeccccceeEEEeccc------------------------cceeeeeCCCCCeeeEEEeccc
Confidence 999999999885 667777777999999999965 2344667788899999996 88
Q ss_pred EEEEeecCCeEEEecCCCCCCCCCCCccceeeec---cCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCC--ce
Q 017553 252 FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY---PVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP--PV 326 (369)
Q Consensus 252 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~--~~ 326 (369)
.+++|+.+|.|.+|++...++.........+... -.+...|++++..|... ++++|+.+|.|++|-+..+- ..
T Consensus 340 HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sd--L~asGS~~G~vrLW~i~~g~r~i~ 417 (479)
T KOG0299|consen 340 HFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSD--LLASGSWSGCVRLWKIEDGLRAIN 417 (479)
T ss_pred ceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCc--eEEecCCCCceEEEEecCCccccc
Confidence 9999999999999999988754332221111111 11124899999999886 99999999999999999883 23
Q ss_pred eEEEeecCCCccceEEEEecCCCCEEEEe-ecCCeEEEE
Q 017553 327 LIARLSHAQSKSPIRQTAMSYDGSTILSC-CEDGAIWRW 364 (369)
Q Consensus 327 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg~i~vw 364 (369)
++..+. -.+-|++++|+++|+.|++| +....+--|
T Consensus 418 ~l~~ls---~~GfVNsl~f~~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 418 LLYSLS---LVGFVNSLAFSNSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred eeeecc---cccEEEEEEEccCCCEEEEeccccccccee
Confidence 344443 33789999999999966555 444444444
No 65
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=5.4e-34 Score=228.54 Aligned_cols=300 Identities=15% Similarity=0.193 Sum_probs=227.5
Q ss_pred cceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCce-eEEEeeeccCCcccceeEEEeeecCCCc
Q 017553 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGV-IAALQSYVDEDKEESFYTVSWACNVDGI 98 (369)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~g~ 98 (369)
.+......|++|+..|.++++.| .|..|++|+-|. |++||+..... ...++. ..+.....|+++.|+ +.|.
T Consensus 155 IP~shEi~l~hgtk~Vsal~~Dp----~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~-l~P~E~h~i~sl~ys--~Tg~ 227 (641)
T KOG0772|consen 155 IPGSHEIQLKHGTKIVSALAVDP----SGARFVSGSLDYTVKFWDFQGMDASMRSFRQ-LQPCETHQINSLQYS--VTGD 227 (641)
T ss_pred CCccceEeccCCceEEEEeeecC----CCceeeeccccceEEEEecccccccchhhhc-cCcccccccceeeec--CCCC
Confidence 34455566889999999999999 699999999999 99999875432 222222 223556789999998 7788
Q ss_pred cEEEEeecCCeEEEEEcCCcccc-------------ceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCc-EE
Q 017553 99 PFLVAGGINGIIRVIDVSNEKLH-------------KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI-CI 164 (369)
Q Consensus 99 ~~l~~~~~dg~i~vwd~~~~~~~-------------~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~ 164 (369)
.|++.+.....+|+|- .|..+ ..-++|...++|.+|+|.....+++++.||++|+||+...+ .+
T Consensus 228 -~iLvvsg~aqakl~DR-dG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~ 305 (641)
T KOG0772|consen 228 -QILVVSGSAQAKLLDR-DGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQL 305 (641)
T ss_pred -eEEEEecCcceeEEcc-CCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhe
Confidence 5666666678999994 44322 22357999999999999888999999999999999997643 33
Q ss_pred EEeec--cCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCC-
Q 017553 165 LIFAG--AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN- 241 (369)
Q Consensus 165 ~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 241 (369)
..++. ..+..-+++.++|+| ++..|++|+.||.|.+|+.+.... ......-..|..
T Consensus 306 qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v--------------------~p~~~vk~AH~~g 364 (641)
T KOG0772|consen 306 QVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTV--------------------RPVMKVKDAHLPG 364 (641)
T ss_pred eEEeeccCCCcccCceeeecCC-CcchhhhcccCCceeeeecCCccc--------------------ccceEeeeccCCC
Confidence 34432 223445789999999 899999999999999999866211 122344566777
Q ss_pred -ceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccC--CCCCeeEEEEeecCCccEEEEec------
Q 017553 242 -YVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV--PECDIWFIKFSCDFHYNAAAIGN------ 310 (369)
Q Consensus 242 -~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~s~~~~~~~l~~~~------ 310 (369)
.|+|+.|+ |++|++-+.|+.+++||+++.+. ++....+ ..-+-+.++|||+.+ ++++|+
T Consensus 365 ~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kk--------pL~~~tgL~t~~~~tdc~FSPd~k--li~TGtS~~~~~ 434 (641)
T KOG0772|consen 365 QDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKK--------PLNVRTGLPTPFPGTDCCFSPDDK--LILTGTSAPNGM 434 (641)
T ss_pred CceeEEEeccccchhhhccCCCceeeeecccccc--------chhhhcCCCccCCCCccccCCCce--EEEecccccCCC
Confidence 89999998 99999999999999999998875 2222221 123456789999996 888875
Q ss_pred CCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEE
Q 017553 311 REGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRW 364 (369)
Q Consensus 311 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw 364 (369)
..|.+.+||..+. ..+.++. -....|..+.|+|.-+.|..|+.||.++||
T Consensus 435 ~~g~L~f~d~~t~--d~v~ki~--i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 435 TAGTLFFFDRMTL--DTVYKID--ISTASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred CCceEEEEeccce--eeEEEec--CCCceEEEEeecchhhheeeecCCCceEEE
Confidence 4678999998887 4555555 335789999999998888899999999986
No 66
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=3.1e-33 Score=257.53 Aligned_cols=264 Identities=16% Similarity=0.234 Sum_probs=210.9
Q ss_pred EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCc----c----ccceeeccccce
Q 017553 60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE----K----LHKSFVGHGDSI 131 (369)
Q Consensus 60 v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~----~----~~~~~~~~~~~v 131 (369)
.++|+.........+.......|...|.+++|+ |+|+ ++++|+.|+.|++|++... . +...+. +...+
T Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs--~dg~-~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v 535 (793)
T PLN00181 460 CKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFD--RDGE-FFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL 535 (793)
T ss_pred hhhhcccceEEEEeeccccccCCCCcEEEEEEC--CCCC-EEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence 778887665554444432223578889999988 8998 9999999999999997542 1 122233 34679
Q ss_pred EEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeee
Q 017553 132 NEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYV 211 (369)
Q Consensus 132 ~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~ 211 (369)
.+++|+|..+.+|++++.||+|++||+.+++.+..+. +|.+.|++++|+|.++.+|++|+.|++|++||++++.
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~---~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~--- 609 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMK---EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV--- 609 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEec---CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc---
Confidence 9999998668899999999999999999998888887 7999999999997578899999999999999998732
Q ss_pred eeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee---CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCC
Q 017553 212 EKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP 288 (369)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 288 (369)
.+..+.. ...+.++.|. +.++++|+.|+.|++||+++.+. .+..+..|
T Consensus 610 --------------------~~~~~~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~--------~~~~~~~h 660 (793)
T PLN00181 610 --------------------SIGTIKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL--------PLCTMIGH 660 (793)
T ss_pred --------------------EEEEEec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc--------cceEecCC
Confidence 2333333 3567888884 78999999999999999987542 34556678
Q ss_pred CCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCC----ceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEE
Q 017553 289 ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP----PVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRW 364 (369)
Q Consensus 289 ~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw 364 (369)
...|..+.|. ++. ++++++.|+.|++||+.... ...+..+. +|...+..++|+|++.+|++|+.|+.|++|
T Consensus 661 ~~~V~~v~f~-~~~--~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~--gh~~~i~~v~~s~~~~~lasgs~D~~v~iw 735 (793)
T PLN00181 661 SKTVSYVRFV-DSS--TLVSSSTDNTLKLWDLSMSISGINETPLHSFM--GHTNVKNFVGLSVSDGYIATGSETNEVFVY 735 (793)
T ss_pred CCCEEEEEEe-CCC--EEEEEECCCEEEEEeCCCCccccCCcceEEEc--CCCCCeeEEEEcCCCCEEEEEeCCCEEEEE
Confidence 8899999997 443 89999999999999997531 13445555 788899999999999999999999999999
Q ss_pred ecC
Q 017553 365 DAI 367 (369)
Q Consensus 365 ~~~ 367 (369)
+..
T Consensus 736 ~~~ 738 (793)
T PLN00181 736 HKA 738 (793)
T ss_pred ECC
Confidence 964
No 67
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=6.5e-34 Score=214.37 Aligned_cols=293 Identities=16% Similarity=0.266 Sum_probs=230.2
Q ss_pred eecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCC----c-----------eeEEEeeeccCCcccceeEEE
Q 017553 27 NKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEG----G-----------VIAALQSYVDEDKEESFYTVS 90 (369)
Q Consensus 27 ~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~----~-----------~~~~~~~~~~~~~~~~v~~~~ 90 (369)
..+..|.+++.+.+|+| ||.++|+|+.|. |+|.|++.. . .-..++.+ -.|.++|+++.
T Consensus 106 ~ylt~HK~~cR~aafs~----DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTl--YDH~devn~l~ 179 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSP----DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTL--YDHVDEVNDLD 179 (430)
T ss_pred EEEeecccceeeeeeCC----CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeeh--hhccCccccee
Confidence 34678999999999999 799999999999 999998611 0 00112221 16788999999
Q ss_pred eeecCCCccEEEEeecCCeEEEEEcCCccccceee--ccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEee
Q 017553 91 WACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFV--GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFA 168 (369)
Q Consensus 91 ~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 168 (369)
|. |... +|++|+.|++|++||+......+.++ ....+|.++.|+| .+.+|+.|..-..+++||+++-++.....
T Consensus 180 FH--Pre~-ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~Qcfvsan 255 (430)
T KOG0640|consen 180 FH--PRET-ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFVSAN 255 (430)
T ss_pred ec--chhh-eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecC-CCceEEEecCCCceeEEeccceeEeeecC
Confidence 98 8888 99999999999999997654433333 2456899999999 99999999999999999999999887776
Q ss_pred ccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeee-ccCC-Cceeee
Q 017553 169 GAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA-SVHS-NYVDCN 246 (369)
Q Consensus 169 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~v~~~ 246 (369)
...+|.+.|+++.+++ .+++.++++.||.|++||--+. ..+.++ ..|. ..|.+.
T Consensus 256 Pd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~-----------------------rCv~t~~~AH~gsevcSa 311 (430)
T KOG0640|consen 256 PDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSN-----------------------RCVRTIGNAHGGSEVCSA 311 (430)
T ss_pred cccccccceeEEEecC-CccEEEEeccCCcEEeeccccH-----------------------HHHHHHHhhcCCceeeeE
Confidence 6668999999999999 9999999999999999997762 223222 3344 467778
Q ss_pred eee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCC-----CCeeEEEEeecCCccEEEE-ecCCCeEEEE
Q 017553 247 RWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPE-----CDIWFIKFSCDFHYNAAAI-GNREGKIFVW 318 (369)
Q Consensus 247 ~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~~~s~~~~~~~l~~-~~~dg~i~i~ 318 (369)
.|. ++++++.+.|..+++|.+.+++ ++..+.+.. ..-+...|..... +++. --..+.+.-|
T Consensus 312 ~Ftkn~kyiLsSG~DS~vkLWEi~t~R---------~l~~YtGAg~tgrq~~rtqAvFNhtEd--yVl~pDEas~slcsW 380 (430)
T KOG0640|consen 312 VFTKNGKYILSSGKDSTVKLWEISTGR---------MLKEYTGAGTTGRQKHRTQAVFNHTED--YVLFPDEASNSLCSW 380 (430)
T ss_pred EEccCCeEEeecCCcceeeeeeecCCc---------eEEEEecCCcccchhhhhhhhhcCccc--eEEccccccCceeec
Confidence 885 8999999999999999999987 555555431 1123345666555 4443 3456789999
Q ss_pred EccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecC
Q 017553 319 ELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 319 d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 367 (369)
|.++.....+..+ +|.+.+..+.-||.+.-+++|+.|-.+|+|--+
T Consensus 381 daRtadr~~l~sl---gHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 381 DARTADRVALLSL---GHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred cccchhhhhhccc---CCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 9998864444333 888999999999999999999999999999644
No 68
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=4.9e-35 Score=232.50 Aligned_cols=245 Identities=19% Similarity=0.299 Sum_probs=206.2
Q ss_pred CcccceeEEEeeecC-CCccEEEEeecCCeEEEEEcCC-ccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEc
Q 017553 81 DKEESFYTVSWACNV-DGIPFLVAGGINGIIRVIDVSN-EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 158 (369)
Q Consensus 81 ~~~~~v~~~~~~~~~-~g~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~ 158 (369)
.|...|.++.|. | .+. +|++++.|+.|+||++.. +++++++.+|..+|.+++|++ .+..+++++.|+.|++||+
T Consensus 212 gH~kgvsai~~f--p~~~h-LlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~-~g~~fLS~sfD~~lKlwDt 287 (503)
T KOG0282|consen 212 GHTKGVSAIQWF--PKKGH-LLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNN-CGTSFLSASFDRFLKLWDT 287 (503)
T ss_pred CCccccchhhhc--cceee-EEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccc-cCCeeeeeecceeeeeecc
Confidence 788999999998 7 555 999999999999999976 789999999999999999999 8999999999999999999
Q ss_pred cCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeecc
Q 017553 159 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV 238 (369)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (369)
++|+++..+. ....++|+.|+|++.+.+++|+.|+.|+.||+|+ ...+..+..
T Consensus 288 ETG~~~~~f~----~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs-----------------------~kvvqeYd~ 340 (503)
T KOG0282|consen 288 ETGQVLSRFH----LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRS-----------------------GKVVQEYDR 340 (503)
T ss_pred ccceEEEEEe----cCCCceeeecCCCCCcEEEEecCCCcEEEEeccc-----------------------hHHHHHHHh
Confidence 9999999997 6678899999996669999999999999999999 445667788
Q ss_pred CCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEE
Q 017553 239 HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF 316 (369)
Q Consensus 239 ~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~ 316 (369)
|-+.|..+.|- +.++++.+.|+.++||+.+..-. .+.+.... .-...++..+|+++ ++++-+.|+.|.
T Consensus 341 hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~------ik~i~~~~--~hsmP~~~~~P~~~--~~~aQs~dN~i~ 410 (503)
T KOG0282|consen 341 HLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVP------IKNIADPE--MHTMPCLTLHPNGK--WFAAQSMDNYIA 410 (503)
T ss_pred hhhheeeeEEccCCceEeeeccCccEEEEEcCCCcc------chhhcchh--hccCcceecCCCCC--eehhhccCceEE
Confidence 99999999996 88999999999999999987652 11222222 23456788999996 999999999999
Q ss_pred EEEccCCCc-eeEEEeecCCC--ccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 317 VWELQSSPP-VLIARLSHAQS--KSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 317 i~d~~~~~~-~~~~~~~~~~~--~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
+|.+...-. .....+. +| .+.-..+.|||||++|++|+.||.+.+||.++
T Consensus 411 ifs~~~~~r~nkkK~fe--Gh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt 463 (503)
T KOG0282|consen 411 IFSTVPPFRLNKKKRFE--GHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKT 463 (503)
T ss_pred EEecccccccCHhhhhc--ceeccCceeeEEEcCCCCeEEeecCCccEEEeechh
Confidence 999764321 1112233 43 24567899999999999999999999999875
No 69
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=100.00 E-value=3.3e-33 Score=231.46 Aligned_cols=284 Identities=19% Similarity=0.274 Sum_probs=233.0
Q ss_pred cceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeE-EEeeecCCCc
Q 017553 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYT-VSWACNVDGI 98 (369)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~g~ 98 (369)
..|++.+.+.+|...|..+++.+ +..+++++.|+ +++|+-..++.+..... ..+.+-|.. +++..+..+
T Consensus 2 ~~Y~ls~~l~gH~~DVr~v~~~~-----~~~i~s~sRd~t~~vw~~~~~~~l~~~~~---~~~~g~i~~~i~y~e~~~~- 72 (745)
T KOG0301|consen 2 PQYKLSHELEGHKSDVRAVAVTD-----GVCIISGSRDGTVKVWAKKGKQYLETHAF---EGPKGFIANSICYAESDKG- 72 (745)
T ss_pred CcceeEEEeccCccchheeEecC-----CeEEeecCCCCceeeeeccCcccccceec---ccCcceeeccceeccccCc-
Confidence 46788999999999999999887 67899999888 99999655554442221 134445554 666542233
Q ss_pred cEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEE
Q 017553 99 PFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVL 178 (369)
Q Consensus 99 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~ 178 (369)
.+++|+.|..|.+|...+..+...+++|...|.++.... ++. +++||.|.++++|-. +++...+. +|+..|.
T Consensus 73 -~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~--~~l~~~l~---gH~asVW 144 (745)
T KOG0301|consen 73 -RLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRI--GELVYSLQ---GHTASVW 144 (745)
T ss_pred -ceEeecccceEEEEecCCCCchhhhhccccceeeeecCC-cCc-eEecccccceEEecc--hhhhcccC---Ccchhee
Confidence 599999999999999999999999999999999999776 554 999999999999986 55666676 8999999
Q ss_pred EEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee-CcEEEEee
Q 017553 179 SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKS 257 (369)
Q Consensus 179 ~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~ 257 (369)
++...| .+ .++||+.|.+|++|.-.+ .+.++.+|.+.|+.+++- +..+++++
T Consensus 145 Av~~l~-e~-~~vTgsaDKtIklWk~~~-------------------------~l~tf~gHtD~VRgL~vl~~~~flScs 197 (745)
T KOG0301|consen 145 AVASLP-EN-TYVTGSADKTIKLWKGGT-------------------------LLKTFSGHTDCVRGLAVLDDSHFLSCS 197 (745)
T ss_pred eeeecC-CC-cEEeccCcceeeeccCCc-------------------------hhhhhccchhheeeeEEecCCCeEeec
Confidence 999998 54 899999999999998755 567889999999999997 55999999
Q ss_pred cCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCc
Q 017553 258 VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSK 337 (369)
Q Consensus 258 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 337 (369)
.||.|++|++. ++ .+.++.+|..-+.++....+++ .++++++|++++||+.. ...+.+.+++
T Consensus 198 NDg~Ir~w~~~-ge---------~l~~~~ghtn~vYsis~~~~~~--~Ivs~gEDrtlriW~~~----e~~q~I~lPt-- 259 (745)
T KOG0301|consen 198 NDGSIRLWDLD-GE---------VLLEMHGHTNFVYSISMALSDG--LIVSTGEDRTLRIWKKD----ECVQVITLPT-- 259 (745)
T ss_pred CCceEEEEecc-Cc---------eeeeeeccceEEEEEEecCCCC--eEEEecCCceEEEeecC----ceEEEEecCc--
Confidence 99999999994 43 7889999999999999666664 89999999999999987 3444444322
Q ss_pred cceEEEEecCCCCEEEEeecCCeEEEEecC
Q 017553 338 SPIRQTAMSYDGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 338 ~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 367 (369)
..|.++.+-++|. |++|+.||.||||-..
T Consensus 260 tsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 260 TSIWSAKVLLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred cceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence 4799999988886 6678899999999865
No 70
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=8.4e-34 Score=223.98 Aligned_cols=255 Identities=17% Similarity=0.272 Sum_probs=213.2
Q ss_pred CcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCcc----------ccceeeccccceEEEEecCCCCceEEEEeCC
Q 017553 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK----------LHKSFVGHGDSINEIRTQPLKPSLVVSASKD 150 (369)
Q Consensus 81 ~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 150 (369)
.|.+.|+.+... |....++++++..+.|+|||..+.. +-.++.+|.+.-.+++|++.....|++++.|
T Consensus 122 ~h~gEVnRaRym--PQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 122 NHDGEVNRARYM--PQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred cCCccchhhhhC--CCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence 578888888887 7777688999999999999985432 1237889999889999999888899999999
Q ss_pred CcEEEEEccCCcE----EEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCC
Q 017553 151 ESVRLWNVQTGIC----ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPT 226 (369)
Q Consensus 151 g~i~vwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~ 226 (369)
+.|++||+..... +.......+|...|..++|++.+..+|++++.|+.+.|||.|+..
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~------------------ 261 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT------------------ 261 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCC------------------
Confidence 9999999975433 222222238999999999999899999999999999999999621
Q ss_pred ceeecceeeeccCCCceeeeeee---CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCc
Q 017553 227 KYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHY 303 (369)
Q Consensus 227 ~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 303 (369)
..+......|...+.|++|+ +..||+|+.|++|++||+|+... ++..+..|...|..+.|||+..
T Consensus 262 ---~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~--------~lh~~e~H~dev~~V~WSPh~e- 329 (422)
T KOG0264|consen 262 ---SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK--------PLHTFEGHEDEVFQVEWSPHNE- 329 (422)
T ss_pred ---CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc--------CceeccCCCcceEEEEeCCCCC-
Confidence 34566778999999999997 66899999999999999999875 7889999999999999999987
Q ss_pred cEEEEecCCCeEEEEEccCCCc----------eeEEEeecCCCccceEEEEecCCCC-EEEEeecCCeEEEEecC
Q 017553 304 NAAAIGNREGKIFVWELQSSPP----------VLIARLSHAQSKSPIRQTAMSYDGS-TILSCCEDGAIWRWDAI 367 (369)
Q Consensus 304 ~~l~~~~~dg~i~i~d~~~~~~----------~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~vw~~~ 367 (369)
.+|++++.|+++.+||+..-.. .....+.|.||...|..+.|+|+.. .|++.+.|+.+.||+..
T Consensus 330 tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 330 TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 6999999999999999874211 1223355779999999999999875 67888999999999976
No 71
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.6e-32 Score=227.36 Aligned_cols=338 Identities=17% Similarity=0.218 Sum_probs=252.1
Q ss_pred ccccccccccccccccccceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCc
Q 017553 4 TAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDK 82 (369)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~ 82 (369)
.|+|.++.+..+...... ...-++.+|..+|+++.|.. .|.+||+||.|+ |.+||+-...-+..+. .|
T Consensus 80 lAVGYaDGsVqif~~~s~--~~~~tfngHK~AVt~l~fd~----~G~rlaSGskDt~IIvwDlV~E~Gl~rL~-----GH 148 (888)
T KOG0306|consen 80 LAVGYADGSVQIFSLESE--EILITFNGHKAAVTTLKFDK----IGTRLASGSKDTDIIVWDLVGEEGLFRLR-----GH 148 (888)
T ss_pred EEEEecCceEEeeccCCC--ceeeeecccccceEEEEEcc----cCceEeecCCCccEEEEEeccceeeEEee-----cc
Confidence 488888888777764433 55556899999999999998 699999999999 9999998877777777 47
Q ss_pred ccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccC--
Q 017553 83 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT-- 160 (369)
Q Consensus 83 ~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~-- 160 (369)
...|+..-|. .+.. ++++.+.|+.|++||+++..+..+.-.|.+.|+.+++.+ +.+++++.|+.+++|++..
T Consensus 149 kd~iT~~~F~--~~~~-~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~---~~lvt~~~dse~~v~~L~~~~ 222 (888)
T KOG0306|consen 149 KDSITQALFL--NGDS-FLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE---KLLVTAGTDSELKVWELAFED 222 (888)
T ss_pred hHHHhHHhcc--CCCe-EEEEeccCceEEEEecccceeeeEEecccceEEEEEEec---ceEEEEecCCceEEEEeeccc
Confidence 7777777665 4444 999999999999999999999999999999999999976 7899999999999999820
Q ss_pred ----------------------CcEEEEeeccC-----------------------------------------------
Q 017553 161 ----------------------GICILIFAGAG----------------------------------------------- 171 (369)
Q Consensus 161 ----------------------~~~~~~~~~~~----------------------------------------------- 171 (369)
++.+.......
T Consensus 223 D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~ 302 (888)
T KOG0306|consen 223 DEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDD 302 (888)
T ss_pred ccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccc
Confidence 00110000000
Q ss_pred --------------------------------------------------------------------CCCCcEEEEEec
Q 017553 172 --------------------------------------------------------------------GHRNEVLSVDFH 183 (369)
Q Consensus 172 --------------------------------------------------------------------~~~~~v~~~~~~ 183 (369)
+|...|.+++++
T Consensus 303 v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS 382 (888)
T KOG0306|consen 303 VEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVS 382 (888)
T ss_pred hhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEee
Confidence 788999999999
Q ss_pred CCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCC----CC-------CCCC------ceeecceeeeccCCCceeee
Q 017553 184 PSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDL----PS-------KFPT------KYVQFPVFIASVHSNYVDCN 246 (369)
Q Consensus 184 ~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~----~~-------~~~~------~~~~~~~~~~~~~~~~v~~~ 246 (369)
. +...+++| ..+.+++|+..+.+..........-. +. .... -.....+.....|.+.|..+
T Consensus 383 ~-d~~~~~Sg-a~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi 460 (888)
T KOG0306|consen 383 S-DSILLASG-AGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSI 460 (888)
T ss_pred c-Cceeeeec-CCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeee
Confidence 5 55555554 46789999999765444332211100 00 0000 00012233556899999999
Q ss_pred eee--CcEEEEeecCCeEEEecCCCCCCCCCCCcc--c--eeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEc
Q 017553 247 RWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTA--D--ILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL 320 (369)
Q Consensus 247 ~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~--~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~ 320 (369)
+.. +..+++|+.|.+|++||..-....+..... . ..+.+. -...|.++.+|||++ +|+++--|++|++|-+
T Consensus 461 ~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spdgk--~LaVsLLdnTVkVyfl 537 (888)
T KOG0306|consen 461 SLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPDGK--LLAVSLLDNTVKVYFL 537 (888)
T ss_pred eecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCCCc--EEEEEeccCeEEEEEe
Confidence 886 779999999999999998654331111100 0 001111 136789999999997 9999999999999999
Q ss_pred cCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecC
Q 017553 321 QSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 367 (369)
.+. +....+. +|.-||.+|..|||+++++|||.|..|+||-+.
T Consensus 538 Dtl--KFflsLY--GHkLPV~smDIS~DSklivTgSADKnVKiWGLd 580 (888)
T KOG0306|consen 538 DTL--KFFLSLY--GHKLPVLSMDISPDSKLIVTGSADKNVKIWGLD 580 (888)
T ss_pred cce--eeeeeec--ccccceeEEeccCCcCeEEeccCCCceEEeccc
Confidence 987 4455555 999999999999999999999999999999764
No 72
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=4.1e-32 Score=223.04 Aligned_cols=242 Identities=26% Similarity=0.475 Sum_probs=207.0
Q ss_pred CcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccC
Q 017553 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 160 (369)
Q Consensus 81 ~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 160 (369)
.|..+|.+++|+ |+++ +|++++.+|.|++|++.+++....+..|...+..+.|+| +++.+++++.||.|++||+.+
T Consensus 7 ~h~~~i~~~~~~--~~~~-~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 7 GHTGGVTCVAFS--PDGK-LLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA-DGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred ccCCCEEEEEEc--CCCC-EEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECC-CCCEEEEEcCCCeEEEEEcCc
Confidence 577899999998 8888 999999999999999998888888889999999999999 778999999999999999998
Q ss_pred CcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCC
Q 017553 161 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 240 (369)
Q Consensus 161 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (369)
++.+..+. .|...+.++.|+| ++.++++++.|+.+++||+++. .....+..|.
T Consensus 83 ~~~~~~~~---~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~-----------------------~~~~~~~~~~ 135 (289)
T cd00200 83 GECVRTLT---GHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVETG-----------------------KCLTTLRGHT 135 (289)
T ss_pred ccceEEEe---ccCCcEEEEEEcC-CCCEEEEecCCCeEEEEECCCc-----------------------EEEEEeccCC
Confidence 88888777 6888999999999 6788888888999999999862 2344555788
Q ss_pred Cceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEE
Q 017553 241 NYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW 318 (369)
Q Consensus 241 ~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~ 318 (369)
..+.++.|+ +.++++++.++.|++||+++.+ .+..+..+...+.++.|+|+++ .+++++.++.|++|
T Consensus 136 ~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~---------~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~ 204 (289)
T cd00200 136 DWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK---------CVATLTGHTGEVNSVAFSPDGE--KLLSSSSDGTIKLW 204 (289)
T ss_pred CcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc---------cceeEecCccccceEEECCCcC--EEEEecCCCcEEEE
Confidence 899999998 4677777779999999998665 4555667777899999999986 78888889999999
Q ss_pred EccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 319 ELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 319 d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
|+..++ ....+. .|...+.++.|+|++.++++++.||.|++|++.+
T Consensus 205 d~~~~~--~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~ 250 (289)
T cd00200 205 DLSTGK--CLGTLR--GHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT 250 (289)
T ss_pred ECCCCc--eecchh--hcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCC
Confidence 998863 444443 5667999999999999999888899999999863
No 73
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.8e-34 Score=219.17 Aligned_cols=285 Identities=13% Similarity=0.190 Sum_probs=233.7
Q ss_pred eeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEE
Q 017553 25 VTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVA 103 (369)
Q Consensus 25 ~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~ 103 (369)
++..|.+|.+.|.|++=+|. .-..+|+|+.|| |+|||+..-.....++ .|.+.|..+++.. . .+++
T Consensus 58 Fv~~L~gHrdGV~~lakhp~---~ls~~aSGs~DG~VkiWnlsqR~~~~~f~-----AH~G~V~Gi~v~~----~-~~~t 124 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPN---KLSTVASGSCDGEVKIWNLSQRECIRTFK-----AHEGLVRGICVTQ----T-SFFT 124 (433)
T ss_pred chhhccccccccchhhcCcc---hhhhhhccccCceEEEEehhhhhhhheee-----cccCceeeEEecc----c-ceEE
Confidence 45567999999999999993 236899999999 9999999988888888 6888999999873 3 6889
Q ss_pred eecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEec
Q 017553 104 GGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFH 183 (369)
Q Consensus 104 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 183 (369)
++.|.+|+.|.++- .+++++.+ ...+..+.-+. .++.++|+|. .|.|||.+...++..+. --.+.|.++.|+
T Consensus 125 vgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~-~~~~FaTcGe--~i~IWD~~R~~Pv~sms---wG~Dti~svkfN 196 (433)
T KOG0268|consen 125 VGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHR-KNSVFATCGE--QIDIWDEQRDNPVSSMS---WGADSISSVKFN 196 (433)
T ss_pred ecCCcceeeeeccC-Ccceeeec-ccccccccccc-ccccccccCc--eeeecccccCCccceee---cCCCceeEEecC
Confidence 99999999999764 56677764 45677787777 6778999887 59999999888998887 466789999999
Q ss_pred CCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCe
Q 017553 184 PSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNE 261 (369)
Q Consensus 184 ~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~ 261 (369)
|.....|++|+.|+.|.+||++.. .|+.... -...-..++|+ .-.++++..|..
T Consensus 197 pvETsILas~~sDrsIvLyD~R~~-----------------------~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~n 252 (433)
T KOG0268|consen 197 PVETSILASCASDRSIVLYDLRQA-----------------------SPLKKVI-LTMRTNTICWNPEAFNFVAANEDHN 252 (433)
T ss_pred CCcchheeeeccCCceEEEecccC-----------------------Cccceee-eeccccceecCccccceeecccccc
Confidence 977888999999999999999993 2332221 12234567787 447889999999
Q ss_pred EEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceE
Q 017553 262 IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIR 341 (369)
Q Consensus 262 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~ 341 (369)
++.||++..+. ++..+..|...|..+.|||.|+ -+++|+.|.+|+||.++.+....+ -+......|.
T Consensus 253 lY~~DmR~l~~--------p~~v~~dhvsAV~dVdfsptG~--EfvsgsyDksIRIf~~~~~~SRdi---YhtkRMq~V~ 319 (433)
T KOG0268|consen 253 LYTYDMRNLSR--------PLNVHKDHVSAVMDVDFSPTGQ--EFVSGSYDKSIRIFPVNHGHSRDI---YHTKRMQHVF 319 (433)
T ss_pred ceehhhhhhcc--------cchhhcccceeEEEeccCCCcc--hhccccccceEEEeecCCCcchhh---hhHhhhheee
Confidence 99999998765 7888889999999999999997 899999999999999988743222 2223346799
Q ss_pred EEEecCCCCEEEEeecCCeEEEEecC
Q 017553 342 QTAMSYDGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 342 ~~~~s~~~~~l~s~~~dg~i~vw~~~ 367 (369)
++.||.|.+++++||+|+.|++|...
T Consensus 320 ~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 320 CVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred EEEEeccccEEEecCCCcceeeeecc
Confidence 99999999999999999999999853
No 74
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=3e-32 Score=213.97 Aligned_cols=282 Identities=17% Similarity=0.223 Sum_probs=240.0
Q ss_pred cCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEE
Q 017553 34 RPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRV 112 (369)
Q Consensus 34 ~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~v 112 (369)
..++++...| ....+++|+.|. +.++|...++.+..++ .|...|..+.+. ++.. .+++++.|-.|+|
T Consensus 220 pgi~ald~~~----s~~~ilTGG~d~~av~~d~~s~q~l~~~~-----Gh~kki~~v~~~--~~~~-~v~~aSad~~i~v 287 (506)
T KOG0289|consen 220 PGITALDIIP----SSSKILTGGEDKTAVLFDKPSNQILATLK-----GHTKKITSVKFH--KDLD-TVITASADEIIRV 287 (506)
T ss_pred CCeeEEeecC----CCCcceecCCCCceEEEecchhhhhhhcc-----CcceEEEEEEec--cchh-heeecCCcceEEe
Confidence 4478888777 357899999996 9999999998888888 577788888877 7777 8999999999999
Q ss_pred EEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEE
Q 017553 113 IDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIAS 192 (369)
Q Consensus 113 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 192 (369)
|.............|..+|+.+..+| .+.+|++++.|++..+.|++++..+...... ...-.+++.+|+| ++.+|.+
T Consensus 288 ws~~~~s~~~~~~~h~~~V~~ls~h~-tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~-~s~v~~ts~~fHp-DgLifgt 364 (506)
T KOG0289|consen 288 WSVPLSSEPTSSRPHEEPVTGLSLHP-TGEYLLSASNDGTWAFSDISSGSQLTVVSDE-TSDVEYTSAAFHP-DGLIFGT 364 (506)
T ss_pred eccccccCccccccccccceeeeecc-CCcEEEEecCCceEEEEEccCCcEEEEEeec-cccceeEEeeEcC-CceEEec
Confidence 99988888888889999999999999 9999999999999999999999988877621 1223589999999 9999999
Q ss_pred EeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEEEecCCCC
Q 017553 193 CGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMK 270 (369)
Q Consensus 193 ~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~ 270 (369)
|..|+.|++||+.+ +..+..+.+|.++|..+.|+ |-+|++++.|+.|++||+|..
T Consensus 365 gt~d~~vkiwdlks-----------------------~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl 421 (506)
T KOG0289|consen 365 GTPDGVVKIWDLKS-----------------------QTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKL 421 (506)
T ss_pred cCCCceEEEEEcCC-----------------------ccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhh
Confidence 99999999999998 44567788999999999997 669999999999999999977
Q ss_pred CCCCCCCccceeeeccCCC-CCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCC
Q 017553 271 EQSPGEGTADILQKYPVPE-CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDG 349 (369)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~-~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 349 (369)
+ .+.++...+ ..+.++.|.+.|. +|+.++.+=+|++++-.+.....+..+. .|.+..+.+.|....
T Consensus 422 ~---------n~kt~~l~~~~~v~s~~fD~SGt--~L~~~g~~l~Vy~~~k~~k~W~~~~~~~--~~sg~st~v~Fg~~a 488 (506)
T KOG0289|consen 422 K---------NFKTIQLDEKKEVNSLSFDQSGT--YLGIAGSDLQVYICKKKTKSWTEIKELA--DHSGLSTGVRFGEHA 488 (506)
T ss_pred c---------ccceeeccccccceeEEEcCCCC--eEEeecceeEEEEEecccccceeeehhh--hcccccceeeecccc
Confidence 6 334443332 3688899999986 8888888888888887777666666665 777899999999999
Q ss_pred CEEEEeecCCeEEEEec
Q 017553 350 STILSCCEDGAIWRWDA 366 (369)
Q Consensus 350 ~~l~s~~~dg~i~vw~~ 366 (369)
++++++|.|..++++.+
T Consensus 489 q~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 489 QYLASTSMDAILRLYAL 505 (506)
T ss_pred eEEeeccchhheEEeec
Confidence 99999999999998865
No 75
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=4.6e-33 Score=219.84 Aligned_cols=262 Identities=18% Similarity=0.297 Sum_probs=215.4
Q ss_pred cCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEe-----eeccCCcccceeEEEeeecCCCccEEEEe
Q 017553 31 EGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQ-----SYVDEDKEESFYTVSWACNVDGIPFLVAG 104 (369)
Q Consensus 31 ~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~g~~~l~~~ 104 (369)
.|.+.|+.+.+-|. +..++|+.+.++ |.|||..+........ ......|+..-+.++|+....| .|+++
T Consensus 122 ~h~gEVnRaRymPQ---np~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g--~Lls~ 196 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQ---NPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEG--TLLSG 196 (422)
T ss_pred cCCccchhhhhCCC---CCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccce--eEeec
Confidence 69999999999995 458888888888 9999987543322111 0111145556777999966666 69999
Q ss_pred ecCCeEEEEEcCCcc-------ccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccC--CcEEEEeeccCCCCC
Q 017553 105 GINGIIRVIDVSNEK-------LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT--GICILIFAGAGGHRN 175 (369)
Q Consensus 105 ~~dg~i~vwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~--~~~~~~~~~~~~~~~ 175 (369)
+.|+.|++||+.... +...+.+|...|..++|++.+..+|++++.|+.+.|||.++ .++..... +|.+
T Consensus 197 ~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~---ah~~ 273 (422)
T KOG0264|consen 197 SDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVK---AHSA 273 (422)
T ss_pred cCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccc---ccCC
Confidence 999999999996542 34567799999999999998899999999999999999994 44455555 7999
Q ss_pred cEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee---CcE
Q 017553 176 EVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDF 252 (369)
Q Consensus 176 ~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~ 252 (369)
+|.|++|+|.++..||+|+.|++|++||+|+. ..++..+..|...|.++.|+ ...
T Consensus 274 ~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL----------------------~~~lh~~e~H~dev~~V~WSPh~etv 331 (422)
T KOG0264|consen 274 EVNCVAFNPFNEFILATGSADKTVALWDLRNL----------------------NKPLHTFEGHEDEVFQVEWSPHNETV 331 (422)
T ss_pred ceeEEEeCCCCCceEEeccCCCcEEEeechhc----------------------ccCceeccCCCcceEEEEeCCCCCce
Confidence 99999999999999999999999999999994 34788999999999999998 568
Q ss_pred EEEeecCCeEEEecCCCCCCC-----CCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCC
Q 017553 253 ILSKSVDNEIVLWEPKMKEQS-----PGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 323 (369)
Q Consensus 253 l~~~~~d~~i~i~d~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~ 323 (369)
|++++.|+.+.+||+...... ...++.+++....+|...|..+.|+|+.. -.+++.+.|+.+.||.....
T Consensus 332 LASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~eP-W~I~SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 332 LASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEP-WTIASVAEDNILQIWQMAEN 406 (422)
T ss_pred eEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCC-eEEEEecCCceEEEeecccc
Confidence 999999999999999765432 23445667788889999999999999987 58889999999999998743
No 76
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=1.6e-31 Score=228.40 Aligned_cols=270 Identities=16% Similarity=0.221 Sum_probs=194.5
Q ss_pred CCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEee--------eccCCcccceeEEEeeecC-CCccEE
Q 017553 32 GKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQS--------YVDEDKEESFYTVSWACNV-DGIPFL 101 (369)
Q Consensus 32 h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~--------~~~~~~~~~v~~~~~~~~~-~g~~~l 101 (369)
|-..|.....++ ++..+++++.+. ...|+...+..+..+.. .....|.+.|.+++|+ | ++. +|
T Consensus 19 ~~~~i~~~~~~~----d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fs--P~d~~-~L 91 (493)
T PTZ00421 19 HFLNVTPSTALW----DCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFN--PFDPQ-KL 91 (493)
T ss_pred ceeccccccccC----CCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEc--CCCCC-EE
Confidence 344566666666 445566666666 56776543332211110 0112588899999998 7 666 89
Q ss_pred EEeecCCeEEEEEcCCc-------cccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCC
Q 017553 102 VAGGINGIIRVIDVSNE-------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR 174 (369)
Q Consensus 102 ~~~~~dg~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 174 (369)
++|+.||+|++||+.++ +++..+.+|...|.+++|+|...++|++++.|+.|++||+++++.+..+. +|.
T Consensus 92 aSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~---~h~ 168 (493)
T PTZ00421 92 FTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIK---CHS 168 (493)
T ss_pred EEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEc---CCC
Confidence 99999999999999765 24667889999999999999556799999999999999999999888887 799
Q ss_pred CcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCce-eeeeee--Cc
Q 017553 175 NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV-DCNRWL--GD 251 (369)
Q Consensus 175 ~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~--~~ 251 (369)
..|.+++|+| ++.+|++++.|++|++||++++ ..+..+..|.... ..+.|. +.
T Consensus 169 ~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg-----------------------~~v~tl~~H~~~~~~~~~w~~~~~ 224 (493)
T PTZ00421 169 DQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDG-----------------------TIVSSVEAHASAKSQRCLWAKRKD 224 (493)
T ss_pred CceEEEEEEC-CCCEEEEecCCCEEEEEECCCC-----------------------cEEEEEecCCCCcceEEEEcCCCC
Confidence 9999999999 8999999999999999999983 3344556666543 345554 45
Q ss_pred EEEEee----cCCeEEEecCCCCCCCCCCCccceeeeccCC-CCCeeEEEEeecCCccEEEEec-CCCeEEEEEccCCCc
Q 017553 252 FILSKS----VDNEIVLWEPKMKEQSPGEGTADILQKYPVP-ECDIWFIKFSCDFHYNAAAIGN-REGKIFVWELQSSPP 325 (369)
Q Consensus 252 ~l~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~~~~~~l~~~~-~dg~i~i~d~~~~~~ 325 (369)
.+++++ .|+.|++||+++... ++.....+ ...+....|++++. +|++++ .|+.|++||+.+++.
T Consensus 225 ~ivt~G~s~s~Dr~VklWDlr~~~~--------p~~~~~~d~~~~~~~~~~d~d~~--~L~lggkgDg~Iriwdl~~~~~ 294 (493)
T PTZ00421 225 LIITLGCSKSQQRQIMLWDTRKMAS--------PYSTVDLDQSSALFIPFFDEDTN--LLYIGSKGEGNIRCFELMNERL 294 (493)
T ss_pred eEEEEecCCCCCCeEEEEeCCCCCC--------ceeEeccCCCCceEEEEEcCCCC--EEEEEEeCCCeEEEEEeeCCce
Confidence 666544 478999999987542 22222222 23455567888886 666665 699999999998854
Q ss_pred eeEEEeecCCCccceEEEEecCC
Q 017553 326 VLIARLSHAQSKSPIRQTAMSYD 348 (369)
Q Consensus 326 ~~~~~~~~~~~~~~v~~~~~s~~ 348 (369)
.....+ .+..++..++|.|.
T Consensus 295 ~~~~~~---~s~~~~~g~~~~pk 314 (493)
T PTZ00421 295 TFCSSY---SSVEPHKGLCMMPK 314 (493)
T ss_pred EEEeec---cCCCCCcceEeccc
Confidence 333222 34457788888885
No 77
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=1.8e-32 Score=211.66 Aligned_cols=257 Identities=14% Similarity=0.239 Sum_probs=215.9
Q ss_pred ceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccE
Q 017553 22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF 100 (369)
Q Consensus 22 ~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~ 100 (369)
.-+...++.+|.++|.+++|.-.++ ....|++++.|+ +++|....++........ ...|+..|-+++.. ++|. .
T Consensus 133 ~Gk~~~~~~Ght~~ik~v~~v~~n~-~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~-~~GHk~~V~sVsv~--~sgt-r 207 (423)
T KOG0313|consen 133 KGKSIKTIVGHTGPIKSVAWVIKNS-SSCLFVSASMDQTLRLWKWNVGENKVKALKV-CRGHKRSVDSVSVD--SSGT-R 207 (423)
T ss_pred CCceEEEEecCCcceeeeEEEecCC-ccceEEEecCCceEEEEEecCchhhhhHHhH-hcccccceeEEEec--CCCC-e
Confidence 3456677899999999888865443 234799999999 999998877654332211 12689999999887 8898 9
Q ss_pred EEEeecCCeEEEEEcCC-------------------------ccccceeeccccceEEEEecCCCCceEEEEeCCCcEEE
Q 017553 101 LVAGGINGIIRVIDVSN-------------------------EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRL 155 (369)
Q Consensus 101 l~~~~~dg~i~vwd~~~-------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~v 155 (369)
+++|+.|..|.+|+..+ +.++-++.+|..+|.++.|++ ...+++++.|.+|+.
T Consensus 208 ~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~ 285 (423)
T KOG0313|consen 208 FCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKV 285 (423)
T ss_pred EEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC--CCceEeecccceEEE
Confidence 99999999999999321 124556789999999999997 678999999999999
Q ss_pred EEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceee
Q 017553 156 WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI 235 (369)
Q Consensus 156 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (369)
||+.++..+..+. ....++++.++| ..++|++|+.|..+++||.|++.. ......
T Consensus 286 WDletg~~~~~~~----~~ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~~~g--------------------s~v~~s 340 (423)
T KOG0313|consen 286 WDLETGGLKSTLT----TNKSLNCISYSP-LSKLLASGSSDRHIRLWDPRTGDG--------------------SVVSQS 340 (423)
T ss_pred EEeecccceeeee----cCcceeEeeccc-ccceeeecCCCCceeecCCCCCCC--------------------ceeEEe
Confidence 9999999998887 678899999999 889999999999999999999532 334668
Q ss_pred eccCCCceeeeeee---CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCC
Q 017553 236 ASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE 312 (369)
Q Consensus 236 ~~~~~~~v~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~d 312 (369)
+.+|.+.|.++.|+ ..+|++++.|+++++||+++.+. ++..+..|...|.++.|...+ .+++|+.|
T Consensus 341 ~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~--------plydI~~h~DKvl~vdW~~~~---~IvSGGaD 409 (423)
T KOG0313|consen 341 LIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKA--------PLYDIAGHNDKVLSVDWNEGG---LIVSGGAD 409 (423)
T ss_pred eecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCC--------cceeeccCCceEEEEeccCCc---eEEeccCc
Confidence 88999999999998 55899999999999999998764 688888999999999998776 89999999
Q ss_pred CeEEEEEcc
Q 017553 313 GKIFVWELQ 321 (369)
Q Consensus 313 g~i~i~d~~ 321 (369)
.+|+++.-.
T Consensus 410 ~~l~i~~~~ 418 (423)
T KOG0313|consen 410 NKLRIFKGS 418 (423)
T ss_pred ceEEEeccc
Confidence 999998654
No 78
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=2.7e-32 Score=233.48 Aligned_cols=251 Identities=21% Similarity=0.361 Sum_probs=219.0
Q ss_pred ccccceeeeee-cccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecC
Q 017553 18 SKKREYRVTNK-LQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNV 95 (369)
Q Consensus 18 ~~~~~~~~~~~-~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 95 (369)
++....+.... +.+|.+.|++++|.. .+.+|++|+.|. +++||+.+|+....+. .|...+.++...
T Consensus 233 ~~~~~~~~i~~~l~GH~g~V~~l~~~~----~~~~lvsgS~D~t~rvWd~~sg~C~~~l~-----gh~stv~~~~~~--- 300 (537)
T KOG0274|consen 233 WDLNNGYLILTRLVGHFGGVWGLAFPS----GGDKLVSGSTDKTERVWDCSTGECTHSLQ-----GHTSSVRCLTID--- 300 (537)
T ss_pred eecccceEEEeeccCCCCCceeEEEec----CCCEEEEEecCCcEEeEecCCCcEEEEec-----CCCceEEEEEcc---
Confidence 33444444444 999999999999986 368999999999 9999999999999998 577888888765
Q ss_pred CCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCC
Q 017553 96 DGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRN 175 (369)
Q Consensus 96 ~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 175 (369)
.. .+++|+.|.+|++|++.+++.+..+.+|.++|.++..+ +.++++|+.|++|++||+.+++++..+. +|..
T Consensus 301 -~~-~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl~---gH~~ 372 (537)
T KOG0274|consen 301 -PF-LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSLS---GHTG 372 (537)
T ss_pred -Cc-eEeeccCCceEEEEeccCcceEEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeeec---CCcc
Confidence 22 78889999999999999999999999999999999996 6899999999999999999999999999 8999
Q ss_pred cEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeeeCcEEEE
Q 017553 176 EVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILS 255 (369)
Q Consensus 176 ~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~ 255 (369)
.|+++.+.+ . ..+++|+.|++|++||+++.. ..+..+..|...+..+.+.++++++
T Consensus 373 ~V~sl~~~~-~-~~~~Sgs~D~~IkvWdl~~~~----------------------~c~~tl~~h~~~v~~l~~~~~~Lvs 428 (537)
T KOG0274|consen 373 RVYSLIVDS-E-NRLLSGSLDTTIKVWDLRTKR----------------------KCIHTLQGHTSLVSSLLLRDNFLVS 428 (537)
T ss_pred eEEEEEecC-c-ceEEeeeeccceEeecCCchh----------------------hhhhhhcCCcccccccccccceeEe
Confidence 999998865 3 889999999999999999921 5678889999999999999999999
Q ss_pred eecCCeEEEecCCCCCCCCCCCccceeeeccC-CCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCc
Q 017553 256 KSVDNEIVLWEPKMKEQSPGEGTADILQKYPV-PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP 325 (369)
Q Consensus 256 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~ 325 (369)
++.|+.|++||..+++ +++.+.. +...+..+++. + ..+++++.||.+++||+++++.
T Consensus 429 ~~aD~~Ik~WD~~~~~---------~~~~~~~~~~~~v~~l~~~-~---~~il~s~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 429 SSADGTIKLWDAEEGE---------CLRTLEGRHVGGVSALALG-K---EEILCSSDDGSVKLWDLRSGTL 486 (537)
T ss_pred ccccccEEEeecccCc---------eeeeeccCCcccEEEeecC-c---ceEEEEecCCeeEEEecccCch
Confidence 9999999999999887 6677766 55778877776 2 2788999999999999999854
No 79
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.3e-32 Score=204.32 Aligned_cols=271 Identities=17% Similarity=0.269 Sum_probs=215.5
Q ss_pred cceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCcc
Q 017553 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIP 99 (369)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~ 99 (369)
..+.+...+..|.++|+++|.+ +.++|+|+.|. |+|||+.+...+..+- .|.+.|+++.|.....-.
T Consensus 31 ~~l~~lF~~~aH~~sitavAVs------~~~~aSGssDetI~IYDm~k~~qlg~ll-----~HagsitaL~F~~~~S~s- 98 (362)
T KOG0294|consen 31 PTLKPLFAFSAHAGSITALAVS------GPYVASGSSDETIHIYDMRKRKQLGILL-----SHAGSITALKFYPPLSKS- 98 (362)
T ss_pred eeeeccccccccccceeEEEec------ceeEeccCCCCcEEEEeccchhhhccee-----ccccceEEEEecCCcchh-
Confidence 4455566678999999999987 58999999888 9999999988888877 578999999998433333
Q ss_pred EEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEE
Q 017553 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLS 179 (369)
Q Consensus 100 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~ 179 (369)
.|++|+.||.|.+|+...-.++.++++|.+.|+.++.+| .+.+-++.+.|+.+++||+-.|+.-..+. -....+.
T Consensus 99 hLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a~v~~----L~~~at~ 173 (362)
T KOG0294|consen 99 HLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVRGRVAFVLN----LKNKATL 173 (362)
T ss_pred heeeecCCCcEEEEEcCCeEEeeeecccccccceeEecC-CCceEEEEcCCceeeeehhhcCccceeec----cCCccee
Confidence 799999999999999999999999999999999999999 89999999999999999999988766655 2333445
Q ss_pred EEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee-CcEEEEeec
Q 017553 180 VDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSV 258 (369)
Q Consensus 180 ~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~ 258 (369)
+.|+| .+.+++.++.+ .|-+|.+..-. +......+..+.|+.|. +..+++|+.
T Consensus 174 v~w~~-~Gd~F~v~~~~-~i~i~q~d~A~------------------------v~~~i~~~~r~l~~~~l~~~~L~vG~d 227 (362)
T KOG0294|consen 174 VSWSP-QGDHFVVSGRN-KIDIYQLDNAS------------------------VFREIENPKRILCATFLDGSELLVGGD 227 (362)
T ss_pred eEEcC-CCCEEEEEecc-EEEEEecccHh------------------------HhhhhhccccceeeeecCCceEEEecC
Confidence 99999 77777777654 68899888721 11112223557777776 889999999
Q ss_pred CCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCC---ceeEEEeecCC
Q 017553 259 DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP---PVLIARLSHAQ 335 (369)
Q Consensus 259 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~ 335 (369)
|+.|++||..+.. ++..+..|...|..+.+-.+....+|++++.||.|++||++... +.++..+.
T Consensus 228 ~~~i~~~D~ds~~---------~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n--- 295 (362)
T KOG0294|consen 228 NEWISLKDTDSDT---------PLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELN--- 295 (362)
T ss_pred CceEEEeccCCCc---------cceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEee---
Confidence 9999999998755 68888899999999986655444699999999999999998752 22333333
Q ss_pred CccceEEEEec
Q 017553 336 SKSPIRQTAMS 346 (369)
Q Consensus 336 ~~~~v~~~~~s 346 (369)
....++|+...
T Consensus 296 ~~~RltCl~~~ 306 (362)
T KOG0294|consen 296 TNVRLTCLRVK 306 (362)
T ss_pred cCCccceeeeh
Confidence 23566666553
No 80
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.3e-33 Score=216.98 Aligned_cols=251 Identities=15% Similarity=0.227 Sum_probs=210.9
Q ss_pred ceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccE
Q 017553 22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF 100 (369)
Q Consensus 22 ~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~ 100 (369)
.+++.+++.+|..+|..+.||| |.++|++|+.+. +.+||..+|.....++. .+...+.+++|. |||. .
T Consensus 258 ~~kl~~tlvgh~~~V~yi~wSP----DdryLlaCg~~e~~~lwDv~tgd~~~~y~~----~~~~S~~sc~W~--pDg~-~ 326 (519)
T KOG0293|consen 258 HFKLKKTLVGHSQPVSYIMWSP----DDRYLLACGFDEVLSLWDVDTGDLRHLYPS----GLGFSVSSCAWC--PDGF-R 326 (519)
T ss_pred ceeeeeeeecccCceEEEEECC----CCCeEEecCchHheeeccCCcchhhhhccc----CcCCCcceeEEc--cCCc-e
Confidence 3899999999999999999999 468888888877 99999999998777663 356789999999 9999 8
Q ss_pred EEEeecCCeEEEEEcCCccccceeeccc-cceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEE
Q 017553 101 LVAGGINGIIRVIDVSNEKLHKSFVGHG-DSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLS 179 (369)
Q Consensus 101 l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~ 179 (369)
+++|+.|+.|..||++ |.....+++-. ..|.+++..+ |++.+++.+.|..|++++.++......+. ...+|++
T Consensus 327 ~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~-Dgk~vl~v~~d~~i~l~~~e~~~dr~lis----e~~~its 400 (519)
T KOG0293|consen 327 FVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITY-DGKYVLLVTVDKKIRLYNREARVDRGLIS----EEQPITS 400 (519)
T ss_pred eEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcC-CCcEEEEEecccceeeechhhhhhhcccc----ccCceeE
Confidence 9999999999999975 55566665533 5699999999 88999999999999999998776655554 6678999
Q ss_pred EEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCc--eeeeeee---CcEEE
Q 017553 180 VDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY--VDCNRWL---GDFIL 254 (369)
Q Consensus 180 ~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~---~~~l~ 254 (369)
++.+. +++++++.-.+..+++||+.. ...+....+|... +-.-+|- ..+++
T Consensus 401 ~~iS~-d~k~~LvnL~~qei~LWDl~e-----------------------~~lv~kY~Ghkq~~fiIrSCFgg~~~~fia 456 (519)
T KOG0293|consen 401 FSISK-DGKLALVNLQDQEIHLWDLEE-----------------------NKLVRKYFGHKQGHFIIRSCFGGGNDKFIA 456 (519)
T ss_pred EEEcC-CCcEEEEEcccCeeEEeecch-----------------------hhHHHHhhcccccceEEEeccCCCCcceEE
Confidence 99998 899999999999999999997 2334455555433 3333443 46999
Q ss_pred EeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCC
Q 017553 255 SKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 323 (369)
Q Consensus 255 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~ 323 (369)
+|+.|+.|+||+..+++ ++..+.+|...+++++|+|..+ .++|+++.||+|+||-....
T Consensus 457 SGSED~kvyIWhr~sgk---------ll~~LsGHs~~vNcVswNP~~p-~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 457 SGSEDSKVYIWHRISGK---------LLAVLSGHSKTVNCVSWNPADP-EMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred ecCCCceEEEEEccCCc---------eeEeecCCcceeeEEecCCCCH-HHhhccCCCCeEEEecCCcc
Confidence 99999999999999988 7999999999999999999887 58999999999999987643
No 81
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-31 Score=198.18 Aligned_cols=249 Identities=15% Similarity=0.206 Sum_probs=194.5
Q ss_pred cccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeC--CCcEEEEEcc
Q 017553 82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASK--DESVRLWNVQ 159 (369)
Q Consensus 82 ~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~--dg~i~vwd~~ 159 (369)
....|.++.|+ ++|. +|++++.|.++++||..+++.++++..+.-.+..++|.. ..+.++.++. |.+||..++.
T Consensus 13 ~~~~i~sl~fs--~~G~-~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth-~~~~~i~sStk~d~tIryLsl~ 88 (311)
T KOG1446|consen 13 TNGKINSLDFS--DDGL-LLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTH-HSNTVIHSSTKEDDTIRYLSLH 88 (311)
T ss_pred CCCceeEEEec--CCCC-EEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEec-CCceEEEccCCCCCceEEEEee
Confidence 56678888887 9999 899999999999999999999999998888899999988 4555555555 8899999999
Q ss_pred CCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccC
Q 017553 160 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH 239 (369)
Q Consensus 160 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (369)
+++.++.+. ||...|.+++.+| .+..+++++.|++|++||+|..+ ....+...
T Consensus 89 dNkylRYF~---GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~-----------------------cqg~l~~~ 141 (311)
T KOG1446|consen 89 DNKYLRYFP---GHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKK-----------------------CQGLLNLS 141 (311)
T ss_pred cCceEEEcC---CCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCC-----------------------CceEEecC
Confidence 999999999 8999999999999 77999999999999999999722 22222223
Q ss_pred CCceeeeeeeCcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEE
Q 017553 240 SNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE 319 (369)
Q Consensus 240 ~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d 319 (369)
..++.+....|-++|++...+.|++||++.....+.. ....-.......+.+.|||+|+ +|+.++..+.+++.|
T Consensus 142 ~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~----tf~i~~~~~~ew~~l~FS~dGK--~iLlsT~~s~~~~lD 215 (311)
T KOG1446|consen 142 GRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFT----TFSITDNDEAEWTDLEFSPDGK--SILLSTNASFIYLLD 215 (311)
T ss_pred CCcceeECCCCcEEEEecCCCeEEEEEecccCCCCce----eEccCCCCccceeeeEEcCCCC--EEEEEeCCCcEEEEE
Confidence 3333333333778888887779999999987543221 1111113357789999999998 788888899999999
Q ss_pred ccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 320 LQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
.-+|..+........... --...+|+||++++++|+.||+|.+|++++
T Consensus 216 Af~G~~~~tfs~~~~~~~-~~~~a~ftPds~Fvl~gs~dg~i~vw~~~t 263 (311)
T KOG1446|consen 216 AFDGTVKSTFSGYPNAGN-LPLSATFTPDSKFVLSGSDDGTIHVWNLET 263 (311)
T ss_pred ccCCcEeeeEeeccCCCC-cceeEEECCCCcEEEEecCCCcEEEEEcCC
Confidence 999964333333221221 225789999999999999999999999875
No 82
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=3.6e-31 Score=226.29 Aligned_cols=208 Identities=19% Similarity=0.351 Sum_probs=164.4
Q ss_pred eeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCc-------EEEEeeccCCCCCcEEEEEecCCCceEEEEEee
Q 017553 123 SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI-------CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM 195 (369)
Q Consensus 123 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 195 (369)
.+.+|.+.|.+++|+|.++++|++|+.|++|++||+.++. ++..+. +|...|.+++|+|..+++|++++.
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~---gH~~~V~~l~f~P~~~~iLaSgs~ 146 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQ---GHTKKVGIVSFHPSAMNVLASAGA 146 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEec---CCCCcEEEEEeCcCCCCEEEEEeC
Confidence 4778999999999999777899999999999999997653 345555 899999999999955679999999
Q ss_pred CCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCC
Q 017553 196 DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQS 273 (369)
Q Consensus 196 d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~ 273 (369)
|++|++||++++ ..+..+..|...|.+++|+ +.+|++++.|+.|++||+++++
T Consensus 147 DgtVrIWDl~tg-----------------------~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~-- 201 (493)
T PTZ00421 147 DMVVNVWDVERG-----------------------KAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT-- 201 (493)
T ss_pred CCEEEEEECCCC-----------------------eEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCc--
Confidence 999999999883 3455677899999999997 7899999999999999999876
Q ss_pred CCCCccceeeeccCCCCC-eeEEEEeecCCccEEEEe---cCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCC
Q 017553 274 PGEGTADILQKYPVPECD-IWFIKFSCDFHYNAAAIG---NREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDG 349 (369)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~-i~~~~~s~~~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 349 (369)
.+..+..|... ...+.|.+++. .++.+| +.|+.|++||+++... ....... .....+....|++++
T Consensus 202 -------~v~tl~~H~~~~~~~~~w~~~~~-~ivt~G~s~s~Dr~VklWDlr~~~~-p~~~~~~-d~~~~~~~~~~d~d~ 271 (493)
T PTZ00421 202 -------IVSSVEAHASAKSQRCLWAKRKD-LIITLGCSKSQQRQIMLWDTRKMAS-PYSTVDL-DQSSALFIPFFDEDT 271 (493)
T ss_pred -------EEEEEecCCCCcceEEEEcCCCC-eEEEEecCCCCCCeEEEEeCCCCCC-ceeEecc-CCCCceEEEEEcCCC
Confidence 45566666543 34677888775 233344 3589999999987542 2222221 223456677899999
Q ss_pred CEEEEee-cCCeEEEEecCC
Q 017553 350 STILSCC-EDGAIWRWDAIP 368 (369)
Q Consensus 350 ~~l~s~~-~dg~i~vw~~~~ 368 (369)
++|++++ .|+.|++||+.+
T Consensus 272 ~~L~lggkgDg~Iriwdl~~ 291 (493)
T PTZ00421 272 NLLYIGSKGEGNIRCFELMN 291 (493)
T ss_pred CEEEEEEeCCCeEEEEEeeC
Confidence 9999888 599999999875
No 83
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=1.6e-30 Score=223.39 Aligned_cols=244 Identities=14% Similarity=0.161 Sum_probs=180.5
Q ss_pred CCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCC-CccEEEEeecCCeEEEEEcCCcc--------ccceeec
Q 017553 57 GNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEK--------LHKSFVG 126 (369)
Q Consensus 57 ~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-g~~~l~~~~~dg~i~vwd~~~~~--------~~~~~~~ 126 (369)
..+ +++|+......+..+. .|...|.+++|+ |+ +. +|++|+.||+|++||+.++. ++..+.+
T Consensus 52 ~~gvI~L~~~~r~~~v~~L~-----gH~~~V~~lafs--P~~~~-lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~g 123 (568)
T PTZ00420 52 LIGAIRLENQMRKPPVIKLK-----GHTSSILDLQFN--PCFSE-ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKG 123 (568)
T ss_pred ceeEEEeeecCCCceEEEEc-----CCCCCEEEEEEc--CCCCC-EEEEEeCCCeEEEEECCCCCccccccccceEEeec
Confidence 344 8889876665555554 588899999998 76 45 99999999999999997642 2346788
Q ss_pred cccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccC
Q 017553 127 HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206 (369)
Q Consensus 127 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~ 206 (369)
|...|.+++|+|....+|++++.|++|++||+++++.+..+. |...|.+++|+| ++.+|++++.|+.|++||+++
T Consensus 124 H~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~----~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rs 198 (568)
T PTZ00420 124 HKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN----MPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRK 198 (568)
T ss_pred CCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe----cCCcEEEEEECC-CCCEEEEEecCCEEEEEECCC
Confidence 999999999999444467899999999999999998877775 667899999999 899999999999999999998
Q ss_pred ceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeee-----e--eCcEEEEeecCC----eEEEecCCCCCCCCC
Q 017553 207 FWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNR-----W--LGDFILSKSVDN----EIVLWEPKMKEQSPG 275 (369)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----~--~~~~l~~~~~d~----~i~i~d~~~~~~~~~ 275 (369)
+ ..+..+.+|.+.+.+.. | +++++++++.|+ .|+|||++....
T Consensus 199 g-----------------------~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~--- 252 (568)
T PTZ00420 199 Q-----------------------EIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTS--- 252 (568)
T ss_pred C-----------------------cEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCC---
Confidence 3 33455667776543322 2 256888888774 799999986432
Q ss_pred CCccceeeec--cCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCC
Q 017553 276 EGTADILQKY--PVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDG 349 (369)
Q Consensus 276 ~~~~~~~~~~--~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 349 (369)
++... ......+......+++ .++++|+.|+.|++|++..+.. ..+....+..++.+++|.|..
T Consensus 253 -----pl~~~~ld~~~~~L~p~~D~~tg--~l~lsGkGD~tIr~~e~~~~~~---~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 253 -----ALVTMSIDNASAPLIPHYDESTG--LIYLIGKGDGNCRYYQHSLGSI---RKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred -----ceEEEEecCCccceEEeeeCCCC--CEEEEEECCCeEEEEEccCCcE---EeecccccCCCccceEEcccc
Confidence 23322 2222222222233334 4888999999999999987643 333333455788899999974
No 84
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.1e-32 Score=216.93 Aligned_cols=245 Identities=22% Similarity=0.289 Sum_probs=206.5
Q ss_pred eecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEee
Q 017553 27 NKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG 105 (369)
Q Consensus 27 ~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~ 105 (369)
+++......|+++.|.. ||.+||+|...+ |+|||..+...+..+. .|+.++..+.|+ |.+...+++|+
T Consensus 62 k~~srFk~~v~s~~fR~----DG~LlaaGD~sG~V~vfD~k~r~iLR~~~-----ah~apv~~~~f~--~~d~t~l~s~s 130 (487)
T KOG0310|consen 62 KTFSRFKDVVYSVDFRS----DGRLLAAGDESGHVKVFDMKSRVILRQLY-----AHQAPVHVTKFS--PQDNTMLVSGS 130 (487)
T ss_pred hhHHhhccceeEEEeec----CCeEEEccCCcCcEEEeccccHHHHHHHh-----hccCceeEEEec--ccCCeEEEecC
Confidence 34555678899999998 799999999988 9999966655566666 578888889888 76666999999
Q ss_pred cCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCC-cEEEEeeccCCCCCcEEEEEecC
Q 017553 106 INGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG-ICILIFAGAGGHRNEVLSVDFHP 184 (369)
Q Consensus 106 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~ 184 (369)
.|+.+++||+.+......+.+|++.|.|.+|+|.++.+++|||.||.|++||.+.. ..+..+. |..+|..+.+.|
T Consensus 131 Dd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln----hg~pVe~vl~lp 206 (487)
T KOG0310|consen 131 DDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN----HGCPVESVLALP 206 (487)
T ss_pred CCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec----CCCceeeEEEcC
Confidence 99999999999988766889999999999999988889999999999999999987 6677775 999999999999
Q ss_pred CCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeE
Q 017553 185 SDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEI 262 (369)
Q Consensus 185 ~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i 262 (369)
++..+++++. ..+++||+-++. ..+.....|...|+|+.+. +..|++++-|+.+
T Consensus 207 -sgs~iasAgG-n~vkVWDl~~G~----------------------qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~V 262 (487)
T KOG0310|consen 207 -SGSLIASAGG-NSVKVWDLTTGG----------------------QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHV 262 (487)
T ss_pred -CCCEEEEcCC-CeEEEEEecCCc----------------------eehhhhhcccceEEEEEeecCCceEeecccccce
Confidence 8888888874 689999999743 2333445599999999997 6899999999999
Q ss_pred EEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccC
Q 017553 263 VLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS 322 (369)
Q Consensus 263 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~ 322 (369)
++||+.+.+ .+..+..+ ++|.+++.+|+++ .++.|..+|.+.+-+...
T Consensus 263 KVfd~t~~K---------vv~s~~~~-~pvLsiavs~dd~--t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 263 KVFDTTNYK---------VVHSWKYP-GPVLSIAVSPDDQ--TVVIGMSNGLVSIRRREV 310 (487)
T ss_pred EEEEccceE---------EEEeeecc-cceeeEEecCCCc--eEEEecccceeeeehhhc
Confidence 999987665 56666554 7899999999986 899999999887775443
No 85
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=8.4e-31 Score=225.05 Aligned_cols=227 Identities=19% Similarity=0.357 Sum_probs=173.7
Q ss_pred EeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCc--------EEEEeeccCCCC
Q 017553 103 AGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI--------CILIFAGAGGHR 174 (369)
Q Consensus 103 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--------~~~~~~~~~~~~ 174 (369)
.|+.++.|++|+......+..+.+|.+.|.+++|+|.++.+|++|+.|+.|++||+.++. ++..+. +|.
T Consensus 49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~---gH~ 125 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILK---GHK 125 (568)
T ss_pred CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEee---cCC
Confidence 356788999999887778888999999999999999558899999999999999998642 223444 799
Q ss_pred CcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcE
Q 017553 175 NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDF 252 (369)
Q Consensus 175 ~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~ 252 (369)
..|.+++|+|.+..++++++.|++|++||++++. ....+. |...|.+++|+ |.+
T Consensus 126 ~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~-----------------------~~~~i~-~~~~V~SlswspdG~l 181 (568)
T PTZ00420 126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK-----------------------RAFQIN-MPKKLSSLKWNIKGNL 181 (568)
T ss_pred CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCc-----------------------EEEEEe-cCCcEEEEEECCCCCE
Confidence 9999999999444566899999999999999842 222332 55679999997 889
Q ss_pred EEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEE-----EEeecCCccEEEEecCC----CeEEEEEccCC
Q 017553 253 ILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFI-----KFSCDFHYNAAAIGNRE----GKIFVWELQSS 323 (369)
Q Consensus 253 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-----~~s~~~~~~~l~~~~~d----g~i~i~d~~~~ 323 (369)
|++++.|+.|++||+++++ .+..+..|...+... .|++++. ++++++.+ +.|+|||++..
T Consensus 182 Lat~s~D~~IrIwD~Rsg~---------~i~tl~gH~g~~~s~~v~~~~fs~d~~--~IlTtG~d~~~~R~VkLWDlr~~ 250 (568)
T PTZ00420 182 LSGTCVGKHMHIIDPRKQE---------IASSFHIHDGGKNTKNIWIDGLGGDDN--YILSTGFSKNNMREMKLWDLKNT 250 (568)
T ss_pred EEEEecCCEEEEEECCCCc---------EEEEEecccCCceeEEEEeeeEcCCCC--EEEEEEcCCCCccEEEEEECCCC
Confidence 9999999999999999876 566677776654333 3446665 67776655 47999999963
Q ss_pred CceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 324 PPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 324 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
. ..+..+....+.+.+......++|.++++|+.|+.|++|++..
T Consensus 251 ~-~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 251 T-SALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred C-CceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccC
Confidence 2 2333333324445554455566789999999999999999864
No 86
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=1.4e-30 Score=220.28 Aligned_cols=311 Identities=20% Similarity=0.212 Sum_probs=240.1
Q ss_pred cccccccceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeee
Q 017553 15 LTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWAC 93 (369)
Q Consensus 15 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 93 (369)
+..+..+.-+.+.+++++...|+++.=+| --+.+|.|-.++ |.|+|++.++.+..++ ...+.|..++|.
T Consensus 184 lql~Nvrt~K~v~~f~~~~s~IT~ieqsP----aLDVVaiG~~~G~ViifNlK~dkil~sFk-----~d~g~VtslSFr- 253 (910)
T KOG1539|consen 184 LQLWNVRTGKVVYTFQEFFSRITAIEQSP----ALDVVAIGLENGTVIIFNLKFDKILMSFK-----QDWGRVTSLSFR- 253 (910)
T ss_pred EEEEEeccCcEEEEecccccceeEeccCC----cceEEEEeccCceEEEEEcccCcEEEEEE-----ccccceeEEEec-
Confidence 44455677788899999999999999999 468999999999 9999999999998887 235899999888
Q ss_pred cCCCccEEEEeecCCeEEEEEcCCccccceee-ccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcE-EEEeeccC
Q 017553 94 NVDGIPFLVAGGINGIIRVIDVSNEKLHKSFV-GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC-ILIFAGAG 171 (369)
Q Consensus 94 ~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~ 171 (369)
.||.+++++|+..|.+-+||++..+.+..++ .|.+.|....|.| +...+++++.|+.+++|=..++.- .+.++...
T Consensus 254 -tDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~-~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~ 331 (910)
T KOG1539|consen 254 -TDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLP-GEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRG 331 (910)
T ss_pred -cCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecC-CCceEeeccCCCceeEEEeeCCCCcchheeecc
Confidence 9999999999999999999999888877666 7989999999999 889999999999999886553221 01111111
Q ss_pred CCC-----------------------------------------------------------------------------
Q 017553 172 GHR----------------------------------------------------------------------------- 174 (369)
Q Consensus 172 ~~~----------------------------------------------------------------------------- 174 (369)
||.
T Consensus 332 GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W 411 (910)
T KOG1539|consen 332 GHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEW 411 (910)
T ss_pred CCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhh
Confidence 233
Q ss_pred -------------------------------------CcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeec
Q 017553 175 -------------------------------------NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTW 217 (369)
Q Consensus 175 -------------------------------------~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~ 217 (369)
..+++++.++ .|++.+.|+..|.|-+|+++++-.
T Consensus 412 ~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSGi~-------- 482 (910)
T KOG1539|consen 412 DNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSGIH-------- 482 (910)
T ss_pred cceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEcccCee--------
Confidence 3445555555 555566666666666666655211
Q ss_pred cCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCC--------------------
Q 017553 218 TDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPG-------------------- 275 (369)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~-------------------- 275 (369)
.........|..+|+.++.+ ++.+++++.+|.+.+||.........
T Consensus 483 ------------r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a 550 (910)
T KOG1539|consen 483 ------------RKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLA 550 (910)
T ss_pred ------------ecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhh
Confidence 01111235799999999998 67899999999999999987752111
Q ss_pred ------------CCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEE
Q 017553 276 ------------EGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQT 343 (369)
Q Consensus 276 ------------~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~ 343 (369)
......++.+.+|...|+.++|||||+ +|++++.|++|++||+.++. ++-.+.. ..+.+++
T Consensus 551 ~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~Dgr--WlisasmD~tIr~wDlpt~~--lID~~~v---d~~~~sl 623 (910)
T KOG1539|consen 551 IALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGR--WLISASMDSTIRTWDLPTGT--LIDGLLV---DSPCTSL 623 (910)
T ss_pred hhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCc--EEEEeecCCcEEEEeccCcc--eeeeEec---CCcceee
Confidence 011234567788999999999999997 99999999999999999994 4444432 2789999
Q ss_pred EecCCCCEEEEeecC-CeEEEEe
Q 017553 344 AMSYDGSTILSCCED-GAIWRWD 365 (369)
Q Consensus 344 ~~s~~~~~l~s~~~d-g~i~vw~ 365 (369)
.|+|+|.+|||+..| .-|++|-
T Consensus 624 s~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 624 SFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred EECCCCCEEEEEEecCceEEEEE
Confidence 999999999999988 5699995
No 87
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=1.8e-31 Score=232.04 Aligned_cols=297 Identities=20% Similarity=0.294 Sum_probs=227.8
Q ss_pred cCCcCeEEEEEeeccCCCccEEEEec--CCc-EEEEEecCCc----eeEE-Eeee--ccCCcccceeEEEeeecCCCccE
Q 017553 31 EGKRPLYAVVFNFIDSRYFNVFATVG--GNR-VTVYQCLEGG----VIAA-LQSY--VDEDKEESFYTVSWACNVDGIPF 100 (369)
Q Consensus 31 ~h~~~v~~~~~s~~~~~~~~~la~~~--~~~-v~iw~~~~~~----~~~~-~~~~--~~~~~~~~v~~~~~~~~~~g~~~ 100 (369)
.++..|.++..+| +|..+|||+ .|+ +.||+...-- .... ++.+ .-..|.+.|.|+.|+ |||+ +
T Consensus 11 H~~~~IfSIdv~p----dg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S--~dG~-~ 83 (942)
T KOG0973|consen 11 HNEKSIFSIDVHP----DGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFS--PDGS-Y 83 (942)
T ss_pred cCCeeEEEEEecC----CceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEEC--CCCC-e
Confidence 4456799999999 799999999 666 8899965211 0000 1111 112688999999999 9999 9
Q ss_pred EEEeecCCeEEEEEcCC------------------ccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCc
Q 017553 101 LVAGGINGIIRVIDVSN------------------EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI 162 (369)
Q Consensus 101 l~~~~~dg~i~vwd~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 162 (369)
||+|+.|+.|.||+... .+.+..+.+|...|..++|+| ++.+|++++.|++|.+|+.++.+
T Consensus 84 lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF~ 162 (942)
T KOG0973|consen 84 LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTFE 162 (942)
T ss_pred EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEccccce
Confidence 99999999999999762 124667889999999999999 89999999999999999999999
Q ss_pred EEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCc
Q 017553 163 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY 242 (369)
Q Consensus 163 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (369)
.+..+. +|...|..+.|.| -|++|++-+.|++|++|+.......... ..|. ....-...
T Consensus 163 ~~~vl~---~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~I----------------t~pf-~~~~~~T~ 221 (942)
T KOG0973|consen 163 LLKVLR---GHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSI----------------TKPF-EESPLTTF 221 (942)
T ss_pred eeeeee---cccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEee----------------ccch-hhCCCcce
Confidence 899888 8999999999999 9999999999999999997662211111 0111 01112345
Q ss_pred eeeeeee--CcEEEEeec----CCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeec--------C-------
Q 017553 243 VDCNRWL--GDFILSKSV----DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCD--------F------- 301 (369)
Q Consensus 243 v~~~~~~--~~~l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--------~------- 301 (369)
+..+.|+ |++|++... -.++.|.+-.+.+ .-..+-+|..++.+++|+|. |
T Consensus 222 f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk---------~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~ 292 (942)
T KOG0973|consen 222 FLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWK---------VDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNC 292 (942)
T ss_pred eeecccCCCcCeecchhhccCCcceeEEEecCCce---------eeeeeecCCCceEEEEeChHHhccccccCCccCCCc
Confidence 6677786 888887643 3347777665444 55677788999999999982 1
Q ss_pred CccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 302 HYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 302 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
.|..+|+|+.|++|-||.....++..+.. . -....|.+|+|+|||..|..+|.||+|.+..++.
T Consensus 293 ~y~i~AvgSqDrSlSVW~T~~~RPl~vi~-~--lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 293 YYCIAAVGSQDRSLSVWNTALPRPLFVIH-N--LFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred ceEEEEEecCCccEEEEecCCCCchhhhh-h--hhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 11378999999999999987765533322 1 3346899999999999999999999999998764
No 88
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=9.4e-31 Score=196.45 Aligned_cols=280 Identities=12% Similarity=0.187 Sum_probs=210.5
Q ss_pred ccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCC-ceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecC
Q 017553 30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEG-GVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN 107 (369)
Q Consensus 30 ~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~d 107 (369)
..-++.|.+|+|||. ...++++++-|+ |++|++... ...... ...+.++|.+++|+ .||. .+++|+.|
T Consensus 24 ~pP~DsIS~l~FSP~---~~~~~~A~SWD~tVR~wevq~~g~~~~ka----~~~~~~PvL~v~Ws--ddgs-kVf~g~~D 93 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQ---ADNLLAAGSWDGTVRIWEVQNSGQLVPKA----QQSHDGPVLDVCWS--DDGS-KVFSGGCD 93 (347)
T ss_pred CCcccchheeEeccc---cCceEEecccCCceEEEEEecCCcccchh----hhccCCCeEEEEEc--cCCc-eEEeeccC
Confidence 456788999999993 367888888888 999999874 333221 22688999999999 8898 99999999
Q ss_pred CeEEEEEcCCccccceeeccccceEEEEecCCCCc--eEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCC
Q 017553 108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPS--LVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS 185 (369)
Q Consensus 108 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 185 (369)
+.+++||+.++ .+..+..|.++|.++.|-+ ... .|++|+.|.+|++||.+...++.++. -.+.++++..-
T Consensus 94 k~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~----LPeRvYa~Dv~-- 165 (347)
T KOG0647|consen 94 KQAKLWDLASG-QVSQVAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ----LPERVYAADVL-- 165 (347)
T ss_pred CceEEEEccCC-CeeeeeecccceeEEEEec-CCCcceeEecccccceeecccCCCCeeeeee----ccceeeehhcc--
Confidence 99999999998 4667778999999999987 544 89999999999999999999999987 77889988874
Q ss_pred CceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEE
Q 017553 186 DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIV 263 (369)
Q Consensus 186 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~ 263 (369)
..+++.+..++.|.+|+++.+....... ..+ -.-.++|++.. .+..+.|+-+|++.
T Consensus 166 -~pm~vVata~r~i~vynL~n~~te~k~~---------------~Sp------Lk~Q~R~va~f~d~~~~alGsiEGrv~ 223 (347)
T KOG0647|consen 166 -YPMAVVATAERHIAVYNLENPPTEFKRI---------------ESP------LKWQTRCVACFQDKDGFALGSIEGRVA 223 (347)
T ss_pred -CceeEEEecCCcEEEEEcCCCcchhhhh---------------cCc------ccceeeEEEEEecCCceEeeeecceEE
Confidence 3578888999999999998743211110 011 12234555543 55669999999999
Q ss_pred EecCCCCCCCCCCCccceeeecc---CCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccce
Q 017553 264 LWEPKMKEQSPGEGTADILQKYP---VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPI 340 (369)
Q Consensus 264 i~d~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v 340 (369)
+..+..+.+.. .-..++-+.-. ..--.|++++|+|... .|++++.||+..+||-.... .++..+ .|..+|
T Consensus 224 iq~id~~~~~~-nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg--tlvTaGsDGtf~FWDkdar~--kLk~s~--~~~qpI 296 (347)
T KOG0647|consen 224 IQYIDDPNPKD-NFTFKCHRSTNSVNDDVYAVNSIAFHPVHG--TLVTAGSDGTFSFWDKDART--KLKTSE--THPQPI 296 (347)
T ss_pred EEecCCCCccC-ceeEEEeccCCCCCCceEEecceEeecccc--eEEEecCCceEEEecchhhh--hhhccC--cCCCcc
Confidence 99888764311 11111111101 0113578899999765 89999999999999987663 333433 777999
Q ss_pred EEEEecCCCCEEEEee
Q 017553 341 RQTAMSYDGSTILSCC 356 (369)
Q Consensus 341 ~~~~~s~~~~~l~s~~ 356 (369)
++..|+.+|.++|-+.
T Consensus 297 tcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 297 TCCSFNRNGSIFAYAL 312 (347)
T ss_pred ceeEecCCCCEEEEEe
Confidence 9999999999987653
No 89
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=5.5e-31 Score=193.77 Aligned_cols=240 Identities=20% Similarity=0.352 Sum_probs=200.3
Q ss_pred CcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccce--eeccccceEEEEecCCCCceEEEEeCCCcEEEEEc
Q 017553 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKS--FVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 158 (369)
Q Consensus 81 ~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~ 158 (369)
.|...+.+++|. .+|. .|++|+.|+++.+|+++..+.... .++|.+.|-.++|+|..+.+|++++.|.+|++||.
T Consensus 18 ~~~~~v~Sv~wn--~~g~-~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~ 94 (313)
T KOG1407|consen 18 GHVQKVHSVAWN--CDGT-KLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDI 94 (313)
T ss_pred hhhhcceEEEEc--ccCc-eeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEe
Confidence 567788899999 8899 999999999999999987765443 45899999999999988999999999999999999
Q ss_pred cCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeecc
Q 017553 159 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV 238 (369)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (369)
+.++++..+. ..+.-.-+.|+| ++.+++.++.|..|.+.|.++.+... ...
T Consensus 95 r~~k~~~~i~----~~~eni~i~wsp-~g~~~~~~~kdD~it~id~r~~~~~~------------------------~~~ 145 (313)
T KOG1407|consen 95 RSGKCTARIE----TKGENINITWSP-DGEYIAVGNKDDRITFIDARTYKIVN------------------------EEQ 145 (313)
T ss_pred ccCcEEEEee----ccCcceEEEEcC-CCCEEEEecCcccEEEEEecccceee------------------------hhc
Confidence 9999999987 444445689999 88999999999999999999833211 112
Q ss_pred CCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEE
Q 017553 239 HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF 316 (369)
Q Consensus 239 ~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~ 316 (369)
....+..+.|+ +++++.....|+|.|......+ ++..++.|.....++.|+|+|+ ++|+|+.|-.+.
T Consensus 146 ~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLk---------pv~si~AH~snCicI~f~p~Gr--yfA~GsADAlvS 214 (313)
T KOG1407|consen 146 FKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLK---------PVQSIKAHPSNCICIEFDPDGR--YFATGSADALVS 214 (313)
T ss_pred ccceeeeeeecCCCCEEEEecCCceEEEEeccccc---------cccccccCCcceEEEEECCCCc--eEeeccccceee
Confidence 23345556665 6777777778999999888665 7889999999999999999997 999999999999
Q ss_pred EEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecC
Q 017553 317 VWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 317 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 367 (369)
+||++.. ..+..+. .+.-+|..+.||.||++||+||+|..|-|=+++
T Consensus 215 LWD~~EL--iC~R~is--RldwpVRTlSFS~dg~~lASaSEDh~IDIA~ve 261 (313)
T KOG1407|consen 215 LWDVDEL--ICERCIS--RLDWPVRTLSFSHDGRMLASASEDHFIDIAEVE 261 (313)
T ss_pred ccChhHh--hhheeec--cccCceEEEEeccCcceeeccCccceEEeEecc
Confidence 9999976 5555665 666899999999999999999999988654443
No 90
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=2e-32 Score=200.20 Aligned_cols=245 Identities=19% Similarity=0.327 Sum_probs=203.7
Q ss_pred eeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEE
Q 017553 25 VTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVA 103 (369)
Q Consensus 25 ~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~ 103 (369)
-+.+|.+|.++|+....+. +..+.|+++.|- -+|||..+|..+..++ |+.-|..++|+ .|.. +|++
T Consensus 51 wigtfeghkgavw~~~l~~----na~~aasaaadftakvw~a~tgdelhsf~------hkhivk~~af~--~ds~-~llt 117 (334)
T KOG0278|consen 51 WIGTFEGHKGAVWSATLNK----NATRAASAAADFTAKVWDAVTGDELHSFE------HKHIVKAVAFS--QDSN-YLLT 117 (334)
T ss_pred cEEeeeccCcceeeeecCc----hhhhhhhhcccchhhhhhhhhhhhhhhhh------hhheeeeEEec--ccch-hhhc
Confidence 3567899999999999988 467788888887 9999999999887775 78889999988 8887 9999
Q ss_pred eecCCeEEEEEcCCcc-ccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEe
Q 017553 104 GGINGIIRVIDVSNEK-LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDF 182 (369)
Q Consensus 104 ~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~ 182 (369)
|+.+..+||||++..+ +...+.+|++.|..+.|.. ..+.|++.+.|++||+||.+++..++.+. ...+|+++.+
T Consensus 118 gg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~-eD~~iLSSadd~tVRLWD~rTgt~v~sL~----~~s~VtSlEv 192 (334)
T KOG0278|consen 118 GGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCH-EDKCILSSADDKTVRLWDHRTGTEVQSLE----FNSPVTSLEV 192 (334)
T ss_pred cchHHHhhhhhccCCCCCchhhcCCCCcceeEEEec-cCceEEeeccCCceEEEEeccCcEEEEEe----cCCCCcceee
Confidence 9999999999998764 5788999999999999998 77888888999999999999999999997 7889999999
Q ss_pred cCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCC
Q 017553 183 HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDN 260 (369)
Q Consensus 183 ~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~ 260 (369)
++ ++.++. -...+.|.+||..+........ -+..|.+.... ...+++|+.|.
T Consensus 193 s~-dG~ilT-ia~gssV~Fwdaksf~~lKs~k------------------------~P~nV~SASL~P~k~~fVaGged~ 246 (334)
T KOG0278|consen 193 SQ-DGRILT-IAYGSSVKFWDAKSFGLLKSYK------------------------MPCNVESASLHPKKEFFVAGGEDF 246 (334)
T ss_pred cc-CCCEEE-EecCceeEEeccccccceeecc------------------------CccccccccccCCCceEEecCcce
Confidence 98 877554 4556789999999843222111 11222322222 66899999999
Q ss_pred eEEEecCCCCCCCCCCCccceeeec-cCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCC
Q 017553 261 EIVLWEPKMKEQSPGEGTADILQKY-PVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP 324 (369)
Q Consensus 261 ~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~ 324 (369)
.++.||..+++ .+..+ ++|-++|.++.|+|+|. ..++|+.||+|++|....++
T Consensus 247 ~~~kfDy~Tge---------Ei~~~nkgh~gpVhcVrFSPdGE--~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 247 KVYKFDYNTGE---------EIGSYNKGHFGPVHCVRFSPDGE--LYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred EEEEEeccCCc---------eeeecccCCCCceEEEEECCCCc--eeeccCCCceEEEEEecCCC
Confidence 99999999997 34444 77889999999999997 89999999999999987764
No 91
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.9e-30 Score=194.26 Aligned_cols=242 Identities=17% Similarity=0.280 Sum_probs=193.9
Q ss_pred eeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCc--eEEEEeCCCc
Q 017553 75 QSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPS--LVVSASKDES 152 (369)
Q Consensus 75 ~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~s~~~dg~ 152 (369)
+.+..+.|..++.+++.+ |. ++++|+.|-+|+|||+.+...+..+-.|.+.|+++.|.+ ... .|++|+.||.
T Consensus 35 ~lF~~~aH~~sitavAVs----~~-~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~ 108 (362)
T KOG0294|consen 35 PLFAFSAHAGSITALAVS----GP-YVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGH 108 (362)
T ss_pred ccccccccccceeEEEec----ce-eEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCc
Confidence 344455799999999976 66 999999999999999999999999999999999999998 443 8999999999
Q ss_pred EEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecc
Q 017553 153 VRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP 232 (369)
Q Consensus 153 i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (369)
|.+|+...-.++..++ +|.+.|+.++.+| .+.+.++.+.|+.+++||+-++.....
T Consensus 109 i~iw~~~~W~~~~slK---~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a~v-------------------- 164 (362)
T KOG0294|consen 109 IIIWRVGSWELLKSLK---AHKGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVRGRVAFV-------------------- 164 (362)
T ss_pred EEEEEcCCeEEeeeec---ccccccceeEecC-CCceEEEEcCCceeeeehhhcCcccee--------------------
Confidence 9999999999999998 7999999999999 999999999999999999988542111
Q ss_pred eeeeccCCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEec
Q 017553 233 VFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN 310 (369)
Q Consensus 233 ~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~ 310 (369)
..+ ...-..+.|+ |++++.++.+ .|-+|.+.+.. .+.....+ ..+.++.|-..+ .|++|.
T Consensus 165 -~~L---~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~---------v~~~i~~~-~r~l~~~~l~~~---~L~vG~ 226 (362)
T KOG0294|consen 165 -LNL---KNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNAS---------VFREIENP-KRILCATFLDGS---ELLVGG 226 (362)
T ss_pred -ecc---CCcceeeEEcCCCCEEEEEecc-EEEEEecccHh---------Hhhhhhcc-ccceeeeecCCc---eEEEec
Confidence 111 1112237776 7888876654 68899888765 22222222 345566665544 899999
Q ss_pred CCCeEEEEEccCCCceeEEEeecCCCccceEEEEe--cCCCCEEEEeecCCeEEEEecCC
Q 017553 311 REGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAM--SYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 311 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
.|+.|.+||..+. .....+. +|...|.++.+ .|++.+|+|+|.||.|+|||+..
T Consensus 227 d~~~i~~~D~ds~--~~~~~~~--AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 227 DNEWISLKDTDSD--TPLTEFL--AHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred CCceEEEeccCCC--ccceeee--cchhheeeeEEEecCCceEEEEeccCceEEEEEccc
Confidence 9999999999986 4455555 88899999985 46789999999999999999864
No 92
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5.4e-31 Score=208.43 Aligned_cols=244 Identities=22% Similarity=0.286 Sum_probs=209.0
Q ss_pred CcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCcccc----c-------------ee-eccccceEEEEecCCCCc
Q 017553 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLH----K-------------SF-VGHGDSINEIRTQPLKPS 142 (369)
Q Consensus 81 ~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~----~-------------~~-~~~~~~v~~~~~~~~~~~ 142 (369)
.|..++.+++++ |+++ +.++++.+|+|.-|++.+++.. . .- +.|...+.+++.++ ++.
T Consensus 140 ~H~~s~~~vals--~d~~-~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~-Dgk 215 (479)
T KOG0299|consen 140 KHQLSVTSVALS--PDDK-RVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS-DGK 215 (479)
T ss_pred cccCcceEEEee--cccc-ceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC-CCc
Confidence 477788888877 9998 9999999999999999877532 0 11 26888999999999 999
Q ss_pred eEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCC
Q 017553 143 LVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPS 222 (369)
Q Consensus 143 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~ 222 (369)
+|++|+.|..|.||+.++.+.++.+. +|.+.|.+++|-. +.+.+++++.|+.+++|+++.
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~---ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~---------------- 275 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFK---GHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQ---------------- 275 (479)
T ss_pred EEEecCCCceEEEecCcccchhhccc---ccccceeeeeeec-CccceeeeecCCceEEEehhH----------------
Confidence 99999999999999999999999988 8999999999997 888899999999999999998
Q ss_pred CCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeec
Q 017553 223 KFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCD 300 (369)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 300 (369)
...+.++.+|++.|..+.-. +..+-+|+.|+++++|++.... ...+.++...+-+++|-.+
T Consensus 276 -------~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees----------qlifrg~~~sidcv~~In~ 338 (479)
T KOG0299|consen 276 -------LSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES----------QLIFRGGEGSIDCVAFIND 338 (479)
T ss_pred -------hHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccc----------eeeeeCCCCCeeeEEEecc
Confidence 34566788999999999876 5566677799999999995443 3345566788999999988
Q ss_pred CCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCcc--------ceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 301 FHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKS--------PIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 301 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--------~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
. .+++|+.+|.|.+|++...++.....+.|..... .|++++..|...++|+|+.+|.|++|.+++
T Consensus 339 ~---HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~ 411 (479)
T KOG0299|consen 339 E---HFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIED 411 (479)
T ss_pred c---ceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecC
Confidence 7 6999999999999999999887777776543333 799999999999999999999999999875
No 93
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.2e-31 Score=203.72 Aligned_cols=242 Identities=23% Similarity=0.399 Sum_probs=203.5
Q ss_pred cceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceee--------ccccceEEEEecCCCCceEEEEeCCCcEEE
Q 017553 84 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFV--------GHGDSINEIRTQPLKPSLVVSASKDESVRL 155 (369)
Q Consensus 84 ~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~l~s~~~dg~i~v 155 (369)
.-+-|..|+ |||+ +|++|+.||-|.+||..+|+..+.++ .+..+|.|+.|+. +..++++|+.||.|++
T Consensus 214 Sh~EcA~FS--PDgq-yLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSR-DsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 214 SHVECARFS--PDGQ-YLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSR-DSEMLASGSQDGKIKV 289 (508)
T ss_pred cchhheeeC--CCCc-eEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecc-cHHHhhccCcCCcEEE
Confidence 344455555 9999 99999999999999999998755443 4788999999999 8999999999999999
Q ss_pred EEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceee
Q 017553 156 WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI 235 (369)
Q Consensus 156 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (369)
|.+++|.+++.+.. +|...|+|+.|+. ++..+++++.|.++++.-+.+ ++.+..
T Consensus 290 Wri~tG~ClRrFdr--AHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKS-----------------------GK~LKE 343 (508)
T KOG0275|consen 290 WRIETGQCLRRFDR--AHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKS-----------------------GKCLKE 343 (508)
T ss_pred EEEecchHHHHhhh--hhccCeeEEEEcc-CcchhhcccccceEEEecccc-----------------------chhHHH
Confidence 99999999999986 7999999999998 888999999999999999998 456778
Q ss_pred eccCCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccC--CCCCeeEEEEeecCCccEEEEecC
Q 017553 236 ASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV--PECDIWFIKFSCDFHYNAAAIGNR 311 (369)
Q Consensus 236 ~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~s~~~~~~~l~~~~~ 311 (369)
+.+|...|+...|. |.++++++.||+|++|+.++.+ ++.+++. ...+|+++..-|... ..++++..
T Consensus 344 frGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Ktte---------C~~Tfk~~~~d~~vnsv~~~PKnp-eh~iVCNr 413 (508)
T KOG0275|consen 344 FRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTE---------CLSTFKPLGTDYPVNSVILLPKNP-EHFIVCNR 413 (508)
T ss_pred hcCccccccceEEcCCCCeEEEecCCccEEEecCcchh---------hhhhccCCCCcccceeEEEcCCCC-ceEEEEcC
Confidence 89999999999996 8899999999999999999887 4444443 345678888877765 47888888
Q ss_pred CCeEEEEEccCCCceeEEEeec-CCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 312 EGKIFVWELQSSPPVLIARLSH-AQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 312 dg~i~i~d~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
.++|++.++... .+..+.. ....+...+.+.||.|.++.+.+.|+.++.|.+.+
T Consensus 414 sntv~imn~qGQ---vVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~s 468 (508)
T KOG0275|consen 414 SNTVYIMNMQGQ---VVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLS 468 (508)
T ss_pred CCeEEEEeccce---EEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeec
Confidence 999999998764 4555542 12235566788999999999999999999998653
No 94
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.9e-30 Score=195.43 Aligned_cols=271 Identities=16% Similarity=0.261 Sum_probs=202.2
Q ss_pred CCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeE
Q 017553 32 GKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGII 110 (369)
Q Consensus 32 h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i 110 (369)
-.+.|.+|.|+| .++.|+.++.|+ +++|+.........+. |+.++.+++|. ++. .+++|+.||.|
T Consensus 12 P~d~IS~v~f~~----~~~~LLvssWDgslrlYdv~~~~l~~~~~------~~~plL~c~F~--d~~--~~~~G~~dg~v 77 (323)
T KOG1036|consen 12 PEDGISSVKFSP----SSSDLLVSSWDGSLRLYDVPANSLKLKFK------HGAPLLDCAFA--DES--TIVTGGLDGQV 77 (323)
T ss_pred ChhceeeEEEcC----cCCcEEEEeccCcEEEEeccchhhhhhee------cCCceeeeecc--CCc--eEEEeccCceE
Confidence 367899999998 355666666777 9999988775544443 78899999987 554 59999999999
Q ss_pred EEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEE
Q 017553 111 RVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRI 190 (369)
Q Consensus 111 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 190 (369)
+.+|+.+++.. .+..|..+|.||.+++ ....+++|+.|++|++||.+.......+. ....|.++... ++.|
T Consensus 78 r~~Dln~~~~~-~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~~~~~d----~~kkVy~~~v~---g~~L 148 (323)
T KOG1036|consen 78 RRYDLNTGNED-QIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKVVVGTFD----QGKKVYCMDVS---GNRL 148 (323)
T ss_pred EEEEecCCcce-eeccCCCceEEEEeec-cCCeEEEcccCccEEEEeccccccccccc----cCceEEEEecc---CCEE
Confidence 99999887644 4556999999999999 78899999999999999999866666665 55689998875 5678
Q ss_pred EEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEEEecCC
Q 017553 191 ASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPK 268 (369)
Q Consensus 191 ~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~ 268 (369)
+.|+.|..+.+||+++....... ....-.-.++|++.. +.-+++++-||+|.+=.+.
T Consensus 149 vVg~~~r~v~iyDLRn~~~~~q~---------------------reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d 207 (323)
T KOG1036|consen 149 VVGTSDRKVLIYDLRNLDEPFQR---------------------RESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFD 207 (323)
T ss_pred EEeecCceEEEEEcccccchhhh---------------------ccccceeEEEEEEEecCCCceEEEeecceEEEEccC
Confidence 88999999999999994321100 011112234555553 5677888999998876555
Q ss_pred CCCCCCCCCccceeeeccCCC---------CCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccc
Q 017553 269 MKEQSPGEGTADILQKYPVPE---------CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSP 339 (369)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~---------~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 339 (369)
..+.... .-..++.|. -+|++++|+|-.+ .|++|+.||.|.+||+.+.+ .+..+. .....
T Consensus 208 ~s~~~~s-----kkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~--tfaTgGsDG~V~~Wd~~~rK--rl~q~~--~~~~S 276 (323)
T KOG1036|consen 208 DSEEAQS-----KKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG--TFATGGSDGIVNIWDLFNRK--RLKQLA--KYETS 276 (323)
T ss_pred CchHHhh-----hceeEEeeecccCCceEEEEeceeEeccccc--eEEecCCCceEEEccCcchh--hhhhcc--CCCCc
Confidence 4421100 111122221 3789999999864 89999999999999999873 455555 44578
Q ss_pred eEEEEecCCCCEEEEeec
Q 017553 340 IRQTAMSYDGSTILSCCE 357 (369)
Q Consensus 340 v~~~~~s~~~~~l~s~~~ 357 (369)
|.+++|+.||..||+++.
T Consensus 277 I~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 277 ISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eEEEEeccCCCeEEEEec
Confidence 999999999999999873
No 95
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-31 Score=219.99 Aligned_cols=291 Identities=18% Similarity=0.317 Sum_probs=231.7
Q ss_pred cCCcCeE---EEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEe-eeccCCcccceeEEEeeecCCCccEEEEee
Q 017553 31 EGKRPLY---AVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQ-SYVDEDKEESFYTVSWACNVDGIPFLVAGG 105 (369)
Q Consensus 31 ~h~~~v~---~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~ 105 (369)
.|...|. ++..++ +.+++|.+||.|+ |++|+.........-+ ...-+.|..-|+.+..+ .+|+ .|++++
T Consensus 19 qn~~~v~~~~~Lq~da---~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~--~~~~-tlIS~S 92 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDA---PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILC--GNGK-TLISAS 92 (735)
T ss_pred hccccccchhhccccC---CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhh--cCCC-ceEEec
Confidence 4555566 444444 3578899999999 9999976543311111 11112577888888888 7787 899999
Q ss_pred cCCeEEEEEcCCc--cccceeeccccceEEEEe-cCCCCceEEEEeCCCcEEEEEccCCc--EEEEee-----cc-CCCC
Q 017553 106 INGIIRVIDVSNE--KLHKSFVGHGDSINEIRT-QPLKPSLVVSASKDESVRLWNVQTGI--CILIFA-----GA-GGHR 174 (369)
Q Consensus 106 ~dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~-~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~-----~~-~~~~ 174 (369)
.|-+|++|+...+ -+..++..|.+.|.|+++ .+ +..++++||-|+.|.+||++++. .+..+. .. .++.
T Consensus 93 sDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak-~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k 171 (735)
T KOG0308|consen 93 SDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAK-NNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPK 171 (735)
T ss_pred CCceEEEeecccCcchhHhhhhcccchheeeeeccc-CceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCc
Confidence 9999999999877 578889999999999999 55 88899999999999999999873 222222 11 2788
Q ss_pred CcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcE
Q 017553 175 NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDF 252 (369)
Q Consensus 175 ~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~ 252 (369)
..|++++.++ .+..|++|+..+.+++||.++ ...+..+.+|..-|.++..+ |..
T Consensus 172 ~siYSLA~N~-t~t~ivsGgtek~lr~wDprt-----------------------~~kimkLrGHTdNVr~ll~~dDGt~ 227 (735)
T KOG0308|consen 172 DSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRT-----------------------CKKIMKLRGHTDNVRVLLVNDDGTR 227 (735)
T ss_pred cceeeeecCC-cceEEEecCcccceEEecccc-----------------------ccceeeeeccccceEEEEEcCCCCe
Confidence 9999999998 889999999999999999999 45677888999999999986 889
Q ss_pred EEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCC-ceeEEEe
Q 017553 253 ILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP-PVLIARL 331 (369)
Q Consensus 253 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~ 331 (369)
+++++.||+|++||+...+ ++.++..|...++++..+|+-. .+.+|+.||.|..=|+.+.. ...+.+
T Consensus 228 ~ls~sSDgtIrlWdLgqQr---------Cl~T~~vH~e~VWaL~~~~sf~--~vYsG~rd~~i~~Tdl~n~~~~tlick- 295 (735)
T KOG0308|consen 228 LLSASSDGTIRLWDLGQQR---------CLATYIVHKEGVWALQSSPSFT--HVYSGGRDGNIYRTDLRNPAKSTLICK- 295 (735)
T ss_pred EeecCCCceEEeeeccccc---------eeeeEEeccCceEEEeeCCCcc--eEEecCCCCcEEecccCCchhheEeec-
Confidence 9999999999999999877 7888999999999999998875 89999999999999999852 222222
Q ss_pred ecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 332 SHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 332 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
...+|..+..+...+-+-+++.|+.|+-|....
T Consensus 296 ----~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 296 ----EDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEP 328 (735)
T ss_pred ----CCCchhhhhhccccCCceeeeccccceecCCcc
Confidence 225777777775554456677899999998754
No 96
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=100.00 E-value=5e-31 Score=211.17 Aligned_cols=283 Identities=15% Similarity=0.236 Sum_probs=227.5
Q ss_pred cCCcCeEEEEEeeccCCCccEEEEecCCcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeE
Q 017553 31 EGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGII 110 (369)
Q Consensus 31 ~h~~~v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i 110 (369)
.|..-|.++++|. ..+.+.||+.++|+|||+........+..+.-.....-|.++.+. |||+ .|++|++-.++
T Consensus 417 ~HGEvVcAvtIS~----~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~--pdgr-tLivGGeastl 489 (705)
T KOG0639|consen 417 AHGEVVCAVTISN----PTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLL--PDGR-TLIVGGEASTL 489 (705)
T ss_pred ccCcEEEEEEecC----CcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEec--CCCc-eEEecccccee
Confidence 6888899999987 478999999999999998754322222211111345667777777 9999 89999999999
Q ss_pred EEEEcCCccc--cceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCce
Q 017553 111 RVIDVSNEKL--HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY 188 (369)
Q Consensus 111 ~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 188 (369)
.|||+....+ ...+....-...+++.+| |.++.+++..||.|.|||+.+...++.++ +|.+.+.||.+++ ++.
T Consensus 490 siWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~Vrqfq---GhtDGascIdis~-dGt 564 (705)
T KOG0639|consen 490 SIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQ---GHTDGASCIDISK-DGT 564 (705)
T ss_pred eeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeeccc---CCCCCceeEEecC-CCc
Confidence 9999986654 334443445678899999 89999999999999999999999999999 8999999999998 899
Q ss_pred EEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEEEec
Q 017553 189 RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWE 266 (369)
Q Consensus 189 ~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d 266 (369)
.|.+|+.|.+||.||++++....+. .....|.++.++ ++++++|-.++.+.+..
T Consensus 565 klWTGGlDntvRcWDlregrqlqqh------------------------dF~SQIfSLg~cP~~dWlavGMens~vevlh 620 (705)
T KOG0639|consen 565 KLWTGGLDNTVRCWDLREGRQLQQH------------------------DFSSQIFSLGYCPTGDWLAVGMENSNVEVLH 620 (705)
T ss_pred eeecCCCccceeehhhhhhhhhhhh------------------------hhhhhheecccCCCccceeeecccCcEEEEe
Confidence 9999999999999999995432222 123456666665 88999999999998887
Q ss_pred CCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEec
Q 017553 267 PKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMS 346 (369)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s 346 (369)
....+ ...+..|+.-|.++.|++.|+ ++++.+.|+.+..|...-+. .+... ....+|.++.+|
T Consensus 621 ~skp~----------kyqlhlheScVLSlKFa~cGk--wfvStGkDnlLnawrtPyGa--siFqs---kE~SsVlsCDIS 683 (705)
T KOG0639|consen 621 TSKPE----------KYQLHLHESCVLSLKFAYCGK--WFVSTGKDNLLNAWRTPYGA--SIFQS---KESSSVLSCDIS 683 (705)
T ss_pred cCCcc----------ceeecccccEEEEEEecccCc--eeeecCchhhhhhccCcccc--ceeec---cccCcceeeeec
Confidence 76543 345566788899999999997 99999999999999988773 33333 333789999999
Q ss_pred CCCCEEEEeecCCeEEEEec
Q 017553 347 YDGSTILSCCEDGAIWRWDA 366 (369)
Q Consensus 347 ~~~~~l~s~~~dg~i~vw~~ 366 (369)
.|.+||+||+.|....||.+
T Consensus 684 ~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 684 FDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cCceEEEecCCCcceEEEEE
Confidence 99999999999999999876
No 97
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1.7e-29 Score=189.29 Aligned_cols=310 Identities=15% Similarity=0.265 Sum_probs=229.3
Q ss_pred ccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCc----------eeEEEeeeccCCcccceeEEEeeecCCCc
Q 017553 30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG----------VIAALQSYVDEDKEESFYTVSWACNVDGI 98 (369)
Q Consensus 30 ~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~----------~~~~~~~~~~~~~~~~v~~~~~~~~~~g~ 98 (369)
+.|.+.|+++...|. .|+++++|+.|+ +.+||++... ....+....+..|+-.|..+.|-+...|
T Consensus 40 r~HgGsvNsL~id~t---egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG- 115 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLT---EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG- 115 (397)
T ss_pred ccCCCccceeeeccc---cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc-
Confidence 579999999999997 489999999999 9999997543 1122233334467889999999954444
Q ss_pred cEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCC--CceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCc
Q 017553 99 PFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLK--PSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNE 176 (369)
Q Consensus 99 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 176 (369)
++.+++.|.+++|||.++.+....|+ ..+.|.+-+++|.. ..++++|..|-.|++.|+.+|...+.+. +|.+.
T Consensus 116 -mFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls---GHr~~ 190 (397)
T KOG4283|consen 116 -MFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS---GHRDG 190 (397)
T ss_pred -eeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec---cccCc
Confidence 79999999999999999988887777 56778888888843 3478888899999999999999999999 89999
Q ss_pred EEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEE
Q 017553 177 VLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFIL 254 (369)
Q Consensus 177 v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~ 254 (369)
|.++.|+|.....|++|+.||.|++||++.-..-....-. ... .....+..-..|.+.+..++|. +.+++
T Consensus 191 vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~---hn~-----k~~p~~~~n~ah~gkvngla~tSd~~~l~ 262 (397)
T KOG4283|consen 191 VLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQ---HNT-----KRPPILKTNTAHYGKVNGLAWTSDARYLA 262 (397)
T ss_pred eEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeec---ccC-----ccCccccccccccceeeeeeecccchhhh
Confidence 9999999988888999999999999999983221111000 000 0011122456799999999996 88999
Q ss_pred EeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecC
Q 017553 255 SKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHA 334 (369)
Q Consensus 255 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 334 (369)
+++.|..+++|+..+++...... .+....-..+ ..+. +. +.+.. .++.--.++.+.++.+-.+ ..+..+.
T Consensus 263 ~~gtd~r~r~wn~~~G~ntl~~~-g~~~~n~~~~-~~~~-~~-~~~s~--vfv~~p~~~~lall~~~sg--s~ir~l~-- 332 (397)
T KOG4283|consen 263 SCGTDDRIRVWNMESGRNTLREF-GPIIHNQTTS-FAVH-IQ-SMDSD--VFVLFPNDGSLALLNLLEG--SFVRRLS-- 332 (397)
T ss_pred hccCccceEEeecccCccccccc-cccccccccc-ceEE-Ee-ecccc--eEEEEecCCeEEEEEccCc--eEEEeee--
Confidence 99999999999998886421110 0011110000 1111 22 22222 4444445688999999888 4566666
Q ss_pred CCccceEEEEecCCCCEEEEeecCCeEEEEec
Q 017553 335 QSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 366 (369)
Q Consensus 335 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~ 366 (369)
.|...|.+.++-|+-+.+.++..|+.|+.|-.
T Consensus 333 ~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 333 THLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred cccceeeEEeecCchhhhhccccCCccccccc
Confidence 66778999999999999999999999999964
No 98
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=4.7e-30 Score=192.74 Aligned_cols=245 Identities=18% Similarity=0.289 Sum_probs=190.3
Q ss_pred CcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCC-ccc-cceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEc
Q 017553 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN-EKL-HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 158 (369)
Q Consensus 81 ~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~-~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~ 158 (369)
..++.|.+++|+ |....++++|+.||+||+|++.. +.. -+....|.++|.+++|+. ++..+++|+.|+.+++||+
T Consensus 25 pP~DsIS~l~FS--P~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsd-dgskVf~g~~Dk~~k~wDL 101 (347)
T KOG0647|consen 25 PPEDSISALAFS--PQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSD-DGSKVFSGGCDKQAKLWDL 101 (347)
T ss_pred CcccchheeEec--cccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEcc-CCceEEeeccCCceEEEEc
Confidence 457789999999 54343788999999999999976 333 245567999999999999 8899999999999999999
Q ss_pred cCCcEEEEeeccCCCCCcEEEEEecCCCce--EEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeee
Q 017553 159 QTGICILIFAGAGGHRNEVLSVDFHPSDIY--RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA 236 (369)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (369)
.+++....- .|.++|..+.|-+ ... .|++|+.|++|++||.|. ..++..+
T Consensus 102 ~S~Q~~~v~----~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~-----------------------~~pv~t~ 153 (347)
T KOG0647|consen 102 ASGQVSQVA----AHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKFWDTRS-----------------------SNPVATL 153 (347)
T ss_pred cCCCeeeee----ecccceeEEEEec-CCCcceeEecccccceeecccCC-----------------------CCeeeee
Confidence 999655544 5999999999987 555 899999999999999998 3344444
Q ss_pred ccCCCceeeeeeeCcEEEEeecCCeEEEecCCCCCCCCCCCccceeeec-cCCCCCeeEEEEeecCCccEEEEecCCCeE
Q 017553 237 SVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY-PVPECDIWFIKFSCDFHYNAAAIGNREGKI 315 (369)
Q Consensus 237 ~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i 315 (369)
. -+..+.++..-..+++++..++.|.+|+++++... .... ..-+-.+.+++...+.+ ..+.|+-+|++
T Consensus 154 ~-LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te--------~k~~~SpLk~Q~R~va~f~d~~--~~alGsiEGrv 222 (347)
T KOG0647|consen 154 Q-LPERVYAADVLYPMAVVATAERHIAVYNLENPPTE--------FKRIESPLKWQTRCVACFQDKD--GFALGSIEGRV 222 (347)
T ss_pred e-ccceeeehhccCceeEEEecCCcEEEEEcCCCcch--------hhhhcCcccceeeEEEEEecCC--ceEeeeecceE
Confidence 3 35566666666788999999999999999876421 1111 11234578888888887 45889999999
Q ss_pred EEEEccCCCceeEEEee-cCC------CccceEEEEecCCCCEEEEeecCCeEEEEecC
Q 017553 316 FVWELQSSPPVLIARLS-HAQ------SKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 316 ~i~d~~~~~~~~~~~~~-~~~------~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 367 (369)
.+..+..+.+..-..+. |.. .-..|++++|+|.-..|+|++.||+..+||-.
T Consensus 223 ~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkd 281 (347)
T KOG0647|consen 223 AIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKD 281 (347)
T ss_pred EEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecch
Confidence 99999886443334444 111 12468899999999999999999999999953
No 99
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.98 E-value=3.7e-29 Score=200.44 Aligned_cols=284 Identities=15% Similarity=0.316 Sum_probs=223.3
Q ss_pred cccCCcCeEEEEEeeccCCCccEEEEecCCcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCC
Q 017553 29 LQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING 108 (369)
Q Consensus 29 ~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg 108 (369)
.+..++.|...+|+|.+ .+++++++.+.+.+|++..+...+....+.... +.-|.|++|. ++|. +++|..+|
T Consensus 196 vk~sne~v~~a~FHPtd---~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~e-kk~Vl~v~F~--engd--viTgDS~G 267 (626)
T KOG2106|consen 196 VKTSNEVVFLATFHPTD---PNLIITCGKGHLYFWTLRGGSLVKRQGIFEKRE-KKFVLCVTFL--ENGD--VITGDSGG 267 (626)
T ss_pred ceeccceEEEEEeccCC---CcEEEEeCCceEEEEEccCCceEEEeecccccc-ceEEEEEEEc--CCCC--EEeecCCc
Confidence 34567789999999975 689999999999999988887776655554433 3677777777 8997 99999999
Q ss_pred eEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeec-------------------
Q 017553 109 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAG------------------- 169 (369)
Q Consensus 109 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~------------------- 169 (369)
.|.||+..+.+..+....|.+.|.+++... ++. |++|+.|..|..||-. -+.++..+.
T Consensus 268 ~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr-~Gt-llSGgKDRki~~Wd~~-y~k~r~~elPe~~G~iRtv~e~~~di~v 344 (626)
T KOG2106|consen 268 NILIWSKGTNRISKQVHAHDGGVFSLCMLR-DGT-LLSGGKDRKIILWDDN-YRKLRETELPEQFGPIRTVAEGKGDILV 344 (626)
T ss_pred eEEEEeCCCceEEeEeeecCCceEEEEEec-Ccc-EeecCccceEEecccc-ccccccccCchhcCCeeEEecCCCcEEE
Confidence 999999988887777779999999999987 654 5569999999999832 111111110
Q ss_pred -------------------cCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceee
Q 017553 170 -------------------AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQ 230 (369)
Q Consensus 170 -------------------~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (369)
..+|.+....++.+| +.+++++++.|+.+++|+-..
T Consensus 345 GTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-s~~q~~T~gqdk~v~lW~~~k------------------------ 399 (626)
T KOG2106|consen 345 GTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-SKNQLLTCGQDKHVRLWNDHK------------------------ 399 (626)
T ss_pred eeccceEEEeeecCCceEEEEecccceeeEEcCC-ChhheeeccCcceEEEccCCc------------------------
Confidence 117888999999999 888999999999999999221
Q ss_pred cceeeeccCCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEE
Q 017553 231 FPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAI 308 (369)
Q Consensus 231 ~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~ 308 (369)
+.. ...-..+..|+.|+ | .++.|...|...+.|..+.. .+..... ..+++.++|+|+|. +||.
T Consensus 400 -~~w-t~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~---------lv~~~~d-~~~ls~v~ysp~G~--~lAv 464 (626)
T KOG2106|consen 400 -LEW-TKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQD---------LVTIHTD-NEQLSVVRYSPDGA--FLAV 464 (626)
T ss_pred -eeE-EEEecCceeEeeccCcc-eEEEeeccceEEEEecccce---------eEEEEec-CCceEEEEEcCCCC--EEEE
Confidence 111 12234556677776 5 99999999999999998854 3333333 78999999999996 9999
Q ss_pred ecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEe
Q 017553 309 GNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 365 (369)
Q Consensus 309 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~ 365 (369)
|+.|+.|++|.+.....+....-.+.+ ++|+.+.||+|+++|.+-+.|-.|..|.
T Consensus 465 gs~d~~iyiy~Vs~~g~~y~r~~k~~g--s~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 465 GSHDNHIYIYRVSANGRKYSRVGKCSG--SPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred ecCCCeEEEEEECCCCcEEEEeeeecC--ceeEEeeecCCCceEEeccCceEEEEEc
Confidence 999999999999887655444444333 8999999999999999999999999994
No 100
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=7.6e-31 Score=220.14 Aligned_cols=288 Identities=18% Similarity=0.306 Sum_probs=226.3
Q ss_pred CcCeEEEEEeeccCCCccEEEEecCCcEEEEEecCCceeEEEeee--ccCCcccceeEEEeeecCCCccEEEEeecCCeE
Q 017553 33 KRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSY--VDEDKEESFYTVSWACNVDGIPFLVAGGINGII 110 (369)
Q Consensus 33 ~~~v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i 110 (369)
+....+|..++ +-..++.++...++||.+............ .....--.+..+.|. +-+.+ +|++++.+|.|
T Consensus 39 k~~~nAIs~nr----~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~-~~~~N-lIAT~s~nG~i 112 (839)
T KOG0269|consen 39 KAKANAISVNR----DINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWG-QLYSN-LIATCSTNGVI 112 (839)
T ss_pred ccccceEeecC----CcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccc-cchhh-hheeecCCCcE
Confidence 34566777777 567888888888888887643321111110 111122345557787 33344 99999999999
Q ss_pred EEEEcCC---ccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCc
Q 017553 111 RVIDVSN---EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDI 187 (369)
Q Consensus 111 ~vwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 187 (369)
.+||+.. .+.+..|..|+..++++.|++...++|++|+.||.|++||++..+...++. +....|.++.|+|..+
T Consensus 113 ~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~---~nSESiRDV~fsp~~~ 189 (839)
T KOG0269|consen 113 SVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFR---SNSESIRDVKFSPGYG 189 (839)
T ss_pred EEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccccc---ccchhhhceeeccCCC
Confidence 9999987 567788999999999999999899999999999999999999998888887 6888999999999889
Q ss_pred eEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEEEe
Q 017553 188 YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLW 265 (369)
Q Consensus 188 ~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~ 265 (369)
+.|+++...|.+.+||+|.. ......+..|.++|.|+.|+ +.+|++|+.|++|+||
T Consensus 190 ~~F~s~~dsG~lqlWDlRqp----------------------~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiW 247 (839)
T KOG0269|consen 190 NKFASIHDSGYLQLWDLRQP----------------------DRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIW 247 (839)
T ss_pred ceEEEecCCceEEEeeccCc----------------------hhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEE
Confidence 99999999999999999984 34566788999999999998 6699999999999999
Q ss_pred cCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEec--CCCeEEEEEccCCCceeEEEeecCCCccceEEE
Q 017553 266 EPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN--REGKIFVWELQSSPPVLIARLSHAQSKSPIRQT 343 (369)
Q Consensus 266 d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~ 343 (369)
|..+.+.. .+..+. ...++..++|-|..+ ..|++++ .|-.|+|||+...- .+...+. .|...++.+
T Consensus 248 d~t~~~~~-------~~~tIn-Tiapv~rVkWRP~~~-~hLAtcsmv~dtsV~VWDvrRPY-IP~~t~~--eH~~~vt~i 315 (839)
T KOG0269|consen 248 DMTDSRAK-------PKHTIN-TIAPVGRVKWRPARS-YHLATCSMVVDTSVHVWDVRRPY-IPYATFL--EHTDSVTGI 315 (839)
T ss_pred eccCCCcc-------ceeEEe-ecceeeeeeeccCcc-chhhhhhccccceEEEEeecccc-ccceeee--ccCccccce
Confidence 99876531 222222 136789999999988 4677665 57789999998763 4455555 788999999
Q ss_pred EecC-CCCEEEEeecCCeEEE
Q 017553 344 AMSY-DGSTILSCCEDGAIWR 363 (369)
Q Consensus 344 ~~s~-~~~~l~s~~~dg~i~v 363 (369)
+|.. |...|.+++.||.|..
T Consensus 316 ~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 316 AWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred eccCCCceeeEeecCccHHHH
Confidence 9975 5568899999998753
No 101
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=1e-29 Score=192.49 Aligned_cols=300 Identities=18% Similarity=0.201 Sum_probs=213.8
Q ss_pred eecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCcee--EEEeeeccCCcccceeEEEeeecCCCccEEEE
Q 017553 27 NKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVI--AALQSYVDEDKEESFYTVSWACNVDGIPFLVA 103 (369)
Q Consensus 27 ~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~ 103 (369)
..|++|.+.|++++|+. +|+.||+++.|+ |+||++.+-... +.++.-.+ -+--+.+.|+ ||.+.++++
T Consensus 80 ~~LKgH~~~vt~~~FsS----dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve---~dhpT~V~Fa--pDc~s~vv~ 150 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSS----DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE---YDHPTRVVFA--PDCKSVVVS 150 (420)
T ss_pred hhhhccCCceeeeEEcC----CCceeEEEeCCceEEEEecchhhhhhhhHhhcccc---CCCceEEEEC--CCcceEEEE
Confidence 45789999999999999 799999999999 999998753211 11111111 1122345666 998867777
Q ss_pred eecCCeEEEEEcCCcc---ccce--------e-eccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccC
Q 017553 104 GGINGIIRVIDVSNEK---LHKS--------F-VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAG 171 (369)
Q Consensus 104 ~~~dg~i~vwd~~~~~---~~~~--------~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 171 (369)
.-...++++|.+...+ .... | +.|.-.|..+-... ++.+|++++.|..|.+|+++ |+.+..+.
T Consensus 151 ~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-Gq~L~~id--- 225 (420)
T KOG2096|consen 151 VKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-GQLLQSID--- 225 (420)
T ss_pred EccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-Cceeeeec---
Confidence 7777889999875322 1111 1 13555666666666 78899999999999999998 88888887
Q ss_pred CCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--
Q 017553 172 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-- 249 (369)
Q Consensus 172 ~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-- 249 (369)
.....-+..+.+| +|+++++++..--|++|.+--.+... ......+..+.+|...|..++|+
T Consensus 226 tnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~---------------fqev~rvf~LkGH~saV~~~aFsn~ 289 (420)
T KOG2096|consen 226 TNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGT---------------FQEVKRVFSLKGHQSAVLAAAFSNS 289 (420)
T ss_pred cccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcc---------------hhhhhhhheeccchhheeeeeeCCC
Confidence 4556667889999 99999999999999999875421110 01123567889999999999998
Q ss_pred CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeecc----CCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCc
Q 017553 250 GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP----VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP 325 (369)
Q Consensus 250 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~ 325 (369)
...+++.+.||.+++||..-.-.....+ ..+...+ .....-..+.++|+++ .|+.+ ....+++|..++++.
T Consensus 290 S~r~vtvSkDG~wriwdtdVrY~~~qDp--k~Lk~g~~pl~aag~~p~RL~lsP~g~--~lA~s-~gs~l~~~~se~g~~ 364 (420)
T KOG2096|consen 290 STRAVTVSKDGKWRIWDTDVRYEAGQDP--KILKEGSAPLHAAGSEPVRLELSPSGD--SLAVS-FGSDLKVFASEDGKD 364 (420)
T ss_pred cceeEEEecCCcEEEeeccceEecCCCc--hHhhcCCcchhhcCCCceEEEeCCCCc--EEEee-cCCceEEEEcccCcc
Confidence 6799999999999999987543211111 1222221 1123334899999996 55544 345799999998753
Q ss_pred eeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEe
Q 017553 326 VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 365 (369)
Q Consensus 326 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~ 365 (369)
. ..++ ..|...|+++.|+++|++++|++ |..+++..
T Consensus 365 ~--~~~e-~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 365 Y--PELE-DIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred c--hhHH-HhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 2 2222 26778999999999999999987 66788765
No 102
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=1.5e-31 Score=208.80 Aligned_cols=245 Identities=20% Similarity=0.312 Sum_probs=200.4
Q ss_pred CcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCcc--ccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEc
Q 017553 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK--LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 158 (369)
Q Consensus 81 ~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~ 158 (369)
.|.+.+..+.|. ++.. .|++|+.|..|++|+....+ .+.++.+..++|+++.|.+ ++..+++++.|+.+++|++
T Consensus 173 ~h~gev~~v~~l--~~sd-tlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~-~~~~~iAas~d~~~r~Wnv 248 (459)
T KOG0288|consen 173 AHEGEVHDVEFL--RNSD-TLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDS-DNKHVIAASNDKNLRLWNV 248 (459)
T ss_pred ccccccceeEEc--cCcc-hhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecC-CCceEEeecCCCceeeeec
Confidence 578889999998 6655 79999999999999987666 6788888899999999999 8889999999999999999
Q ss_pred cCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeecc
Q 017553 159 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV 238 (369)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (369)
...+...++. +|.+.|+++.|.. +...+++|+.|.+|++||+.... ..... .
T Consensus 249 d~~r~~~TLs---GHtdkVt~ak~~~-~~~~vVsgs~DRtiK~WDl~k~~-----------------------C~kt~-l 300 (459)
T KOG0288|consen 249 DSLRLRHTLS---GHTDKVTAAKFKL-SHSRVVSGSADRTIKLWDLQKAY-----------------------CSKTV-L 300 (459)
T ss_pred cchhhhhhhc---ccccceeeehhhc-cccceeeccccchhhhhhhhhhh-----------------------eeccc-c
Confidence 9999988888 8999999999987 55559999999999999999821 11111 1
Q ss_pred CCCceeeeeeeCcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEE
Q 017553 239 HSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW 318 (369)
Q Consensus 239 ~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~ 318 (369)
....+..+...+..+++|..|+.|++||.++.. .....+.+ +.|+++..++++. .+.+.+.|..+.+.
T Consensus 301 ~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~---------~~~sv~~g-g~vtSl~ls~~g~--~lLsssRDdtl~vi 368 (459)
T KOG0288|consen 301 PGSQCNDIVCSISDVISGHFDKKVRFWDIRSAD---------KTRSVPLG-GRVTSLDLSMDGL--ELLSSSRDDTLKVI 368 (459)
T ss_pred ccccccceEecceeeeecccccceEEEeccCCc---------eeeEeecC-cceeeEeeccCCe--EEeeecCCCceeee
Confidence 122334444447788999999999999999886 56666665 4899999999996 77777999999999
Q ss_pred EccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCCC
Q 017553 319 ELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIPT 369 (369)
Q Consensus 319 d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~~ 369 (369)
|+++........-.......-.+.+.|||++.|+++||.||.|+||++.++
T Consensus 369 DlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg 419 (459)
T KOG0288|consen 369 DLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG 419 (459)
T ss_pred ecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc
Confidence 999985443333332233345899999999999999999999999998753
No 103
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8.2e-30 Score=210.51 Aligned_cols=243 Identities=18% Similarity=0.266 Sum_probs=208.6
Q ss_pred cCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCe
Q 017553 31 EGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGI 109 (369)
Q Consensus 31 ~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~ 109 (369)
-+...|+++.|++ +|.+||+|..++ |.|||..+.+.+..+.. .|...|.+++|. +. .+.+|+.++.
T Consensus 215 ~~~~~vtSv~ws~----~G~~LavG~~~g~v~iwD~~~~k~~~~~~~----~h~~rvg~laW~----~~-~lssGsr~~~ 281 (484)
T KOG0305|consen 215 FGEELVTSVKWSP----DGSHLAVGTSDGTVQIWDVKEQKKTRTLRG----SHASRVGSLAWN----SS-VLSSGSRDGK 281 (484)
T ss_pred cCCCceEEEEECC----CCCEEEEeecCCeEEEEehhhccccccccC----CcCceeEEEecc----Cc-eEEEecCCCc
Confidence 3488999999999 799999999999 99999998888887774 288899999997 33 8999999999
Q ss_pred EEEEEcCCccccce-eeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCce
Q 017553 110 IRVIDVSNEKLHKS-FVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY 188 (369)
Q Consensus 110 i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 188 (369)
|..+|++..+.... +.+|...|..++|++ ++.++++|+.|+.+.|||....+++..+. .|...|.+++|+|....
T Consensus 282 I~~~dvR~~~~~~~~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~p~~~~~---~H~aAVKA~awcP~q~~ 357 (484)
T KOG0305|consen 282 ILNHDVRISQHVVSTLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGLSPEPKFTFT---EHTAAVKALAWCPWQSG 357 (484)
T ss_pred EEEEEEecchhhhhhhhcccceeeeeEECC-CCCeeccCCCccceEeccCCCccccEEEe---ccceeeeEeeeCCCccC
Confidence 99999998866544 889999999999999 99999999999999999998888888888 79999999999998889
Q ss_pred EEEEEe--eCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEE--eecCCeE
Q 017553 189 RIASCG--MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILS--KSVDNEI 262 (369)
Q Consensus 189 ~l~~~~--~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~--~~~d~~i 262 (369)
+||+|+ .|+.|++||..++. .+. .......|..+.|+ .+.|++ |..++.|
T Consensus 358 lLAsGGGs~D~~i~fwn~~~g~-----------------------~i~-~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i 413 (484)
T KOG0305|consen 358 LLATGGGSADRCIKFWNTNTGA-----------------------RID-SVDTGSQVCSLIWSKKYKELLSTHGYSENQI 413 (484)
T ss_pred ceEEcCCCcccEEEEEEcCCCc-----------------------Eec-ccccCCceeeEEEcCCCCEEEEecCCCCCcE
Confidence 999975 58999999999843 222 22356789999998 323444 3457789
Q ss_pred EEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCc
Q 017553 263 VLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP 325 (369)
Q Consensus 263 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~ 325 (369)
.||+..+.+ .+..+.+|...|..++++||+. .+++|+.|.++++|++-+..+
T Consensus 414 ~lw~~ps~~---------~~~~l~gH~~RVl~la~SPdg~--~i~t~a~DETlrfw~~f~~~~ 465 (484)
T KOG0305|consen 414 TLWKYPSMK---------LVAELLGHTSRVLYLALSPDGE--TIVTGAADETLRFWNLFDERP 465 (484)
T ss_pred EEEeccccc---------eeeeecCCcceeEEEEECCCCC--EEEEecccCcEEeccccCCCC
Confidence 999999866 7888999999999999999996 999999999999999988543
No 104
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.97 E-value=1.1e-29 Score=208.78 Aligned_cols=306 Identities=17% Similarity=0.220 Sum_probs=215.1
Q ss_pred cCCcCeEE--EEEeeccCCCccEEEEecCCc-EEEEEecCCcee-EEEeeeccCCcccceeEEEeeecCCCccEEEEeec
Q 017553 31 EGKRPLYA--VVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVI-AALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI 106 (369)
Q Consensus 31 ~h~~~v~~--~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~ 106 (369)
.|.-++.. ..|++.+ ....+||.+.+++ |.++|...-.-. ..-+-.....|...|+.+.|. | |+..|++++.
T Consensus 45 ~~~~p~pPf~~sFs~~~-n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wa--p-ge~~lVsasG 120 (720)
T KOG0321|consen 45 NDGLPVPPFADSFSAAP-NKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWA--P-GESLLVSASG 120 (720)
T ss_pred cCCCCCCCccccccCCC-CccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccC--C-CceeEEEccC
Confidence 34444444 6777743 3568999999999 999997543322 111112223689999999999 7 6668999999
Q ss_pred CCeEEEEEcCCccccce--eeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCc--------------------EE
Q 017553 107 NGIIRVIDVSNEKLHKS--FVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI--------------------CI 164 (369)
Q Consensus 107 dg~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--------------------~~ 164 (369)
|.++++||+++.+++.. +.+|.+.|.+++|.|.+...|++|+.||.|.|||++... +.
T Consensus 121 DsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptps 200 (720)
T KOG0321|consen 121 DSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPS 200 (720)
T ss_pred CceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCC
Confidence 99999999999988776 889999999999999999999999999999999997332 00
Q ss_pred ----EEeeccCCCCCcEEE---EEecCCCceEEEEEee-CCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeee
Q 017553 165 ----LIFAGAGGHRNEVLS---VDFHPSDIYRIASCGM-DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA 236 (369)
Q Consensus 165 ----~~~~~~~~~~~~v~~---~~~~~~~~~~l~~~~~-d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (369)
+.......+...|.+ +.+.. |...|++++. |+.|++||++......+.. ......+
T Consensus 201 kp~~kr~~k~kA~s~ti~ssvTvv~fk-De~tlaSaga~D~~iKVWDLRk~~~~~r~e---------------p~~~~~~ 264 (720)
T KOG0321|consen 201 KPLKKRIRKWKAASNTIFSSVTVVLFK-DESTLASAGAADSTIKVWDLRKNYTAYRQE---------------PRGSDKY 264 (720)
T ss_pred chhhccccccccccCceeeeeEEEEEe-ccceeeeccCCCcceEEEeecccccccccC---------------CCcccCc
Confidence 001111134444444 44444 7888999888 9999999999844322211 0111122
Q ss_pred ccC---CCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCC--CeeEEEEeecCCccEEEEe
Q 017553 237 SVH---SNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPEC--DIWFIKFSCDFHYNAAAIG 309 (369)
Q Consensus 237 ~~~---~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~s~~~~~~~l~~~ 309 (369)
..| ...+.++..+ |.++++.+.|+.|++|++.+.... ++..+.++.. --..-..+|++. ++++|
T Consensus 265 ~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~s-------P~~~~sg~~~~sf~vks~lSpd~~--~l~Sg 335 (720)
T KOG0321|consen 265 PTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSIS-------PVAEFSGKLNSSFYVKSELSPDDC--SLLSG 335 (720)
T ss_pred cCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcC-------chhhccCcccceeeeeeecCCCCc--eEecc
Confidence 222 2345555555 788888888999999999887542 2333332221 112234678886 99999
Q ss_pred cCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCC-CEEEEeecCCeEEEEecCC
Q 017553 310 NREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDG-STILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 310 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~vw~~~~ 368 (369)
+.|...++|.+.+.+. ....+. +|...|++++|.|.. .-++++++|-.++||++.+
T Consensus 336 Ssd~~ayiw~vs~~e~-~~~~l~--Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 336 SSDEQAYIWVVSSPEA-PPALLL--GHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSN 392 (720)
T ss_pred CCCcceeeeeecCccC-Chhhhh--CcceEEEEEeeccccCCCceeeccCcceEEEeccC
Confidence 9999999999998753 333334 888999999998753 4577789999999999864
No 105
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.8e-30 Score=187.07 Aligned_cols=255 Identities=16% Similarity=0.240 Sum_probs=199.6
Q ss_pred CcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCc---cccceeeccccceEEEEe-cCCCCceEEEEeCCCcEEEE
Q 017553 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE---KLHKSFVGHGDSINEIRT-QPLKPSLVVSASKDESVRLW 156 (369)
Q Consensus 81 ~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~v~~~~~-~~~~~~~l~s~~~dg~i~vw 156 (369)
.|++.|......+. |+ .|++++.|++|+|+..+.. +++.++.+|.++|..++| +|.-+.+|++++.||.|.||
T Consensus 9 ~H~D~IHda~lDyy--gk-rlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYY--GK-RLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhHhhhhhh--cc-eeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 57777777777643 77 8999999999999998765 467889999999999999 46668899999999999999
Q ss_pred EccCCcEEEEeeccCCCCCcEEEEEecCCC-ceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceee
Q 017553 157 NVQTGICILIFAGAGGHRNEVLSVDFHPSD-IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI 235 (369)
Q Consensus 157 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (369)
.-++++-.+ ......|...|++++|.|++ +-+|++++.||.|.+.+.+.... -.....
T Consensus 86 ke~~g~w~k-~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~--------------------w~t~ki 144 (299)
T KOG1332|consen 86 KEENGRWTK-AYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG--------------------WTTSKI 144 (299)
T ss_pred ecCCCchhh-hhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCC--------------------ccchhh
Confidence 988874332 22233799999999999843 56789999999999999987311 112334
Q ss_pred eccCCCceeeeeee-----C-----------cEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEee
Q 017553 236 ASVHSNYVDCNRWL-----G-----------DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSC 299 (369)
Q Consensus 236 ~~~~~~~v~~~~~~-----~-----------~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 299 (369)
...|+-.|++++|. | +.|++|+.|+.|+||+..+.. ...-..+..|...+..++|.|
T Consensus 145 ~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~-------w~~e~~l~~H~dwVRDVAwaP 217 (299)
T KOG1332|consen 145 VFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS-------WKLERTLEGHKDWVRDVAWAP 217 (299)
T ss_pred hhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc-------hhhhhhhhhcchhhhhhhhcc
Confidence 56788888888885 2 469999999999999998763 223445888999999999999
Q ss_pred cCC--ccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecC
Q 017553 300 DFH--YNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 300 ~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 367 (369)
.-. ..+|++++.||++.||...........++.+ .....+..+.||+.|+.|+.++.|+.|.+|.-+
T Consensus 218 ~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~-~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 218 SVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLE-EFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ccCCCceeeEEecCCCcEEEEEecCccCcccccccc-cCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 753 3589999999999999887432122222211 344789999999999999999999999999743
No 106
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=3.5e-29 Score=188.67 Aligned_cols=244 Identities=17% Similarity=0.255 Sum_probs=190.4
Q ss_pred CcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccC
Q 017553 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 160 (369)
Q Consensus 81 ~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 160 (369)
..+..|..+.|+ |.+. .|++++.||.+++||+........++ |..++.+++|.+ ...+++|+.||.|+.+|+.+
T Consensus 11 pP~d~IS~v~f~--~~~~-~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d--~~~~~~G~~dg~vr~~Dln~ 84 (323)
T KOG1036|consen 11 PPEDGISSVKFS--PSSS-DLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD--ESTIVTGGLDGQVRRYDLNT 84 (323)
T ss_pred CChhceeeEEEc--CcCC-cEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC--CceEEEeccCceEEEEEecC
Confidence 346788889988 7676 78888899999999998887777776 899999999986 56799999999999999998
Q ss_pred CcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCC
Q 017553 161 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 240 (369)
Q Consensus 161 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (369)
++....- .|..+|.++.+++ ....+++|+.|++|++||.+.. ..... ....
T Consensus 85 ~~~~~ig----th~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~-----------------------~~~~~-~d~~ 135 (323)
T KOG1036|consen 85 GNEDQIG----THDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNK-----------------------VVVGT-FDQG 135 (323)
T ss_pred Ccceeec----cCCCceEEEEeec-cCCeEEEcccCccEEEEecccc-----------------------ccccc-cccC
Confidence 8776655 4999999999998 7788999999999999999961 11111 1234
Q ss_pred CceeeeeeeCcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEc
Q 017553 241 NYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL 320 (369)
Q Consensus 241 ~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~ 320 (369)
..|.++...++.|++|+.|..+.+||+++...... ..-..-+-.+.++++-|++. =.++++-||+|.+=.+
T Consensus 136 kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q-------~reS~lkyqtR~v~~~pn~e--Gy~~sSieGRVavE~~ 206 (323)
T KOG1036|consen 136 KKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQ-------RRESSLKYQTRCVALVPNGE--GYVVSSIEGRVAVEYF 206 (323)
T ss_pred ceEEEEeccCCEEEEeecCceEEEEEcccccchhh-------hccccceeEEEEEEEecCCC--ceEEEeecceEEEEcc
Confidence 48999999999999999999999999998864221 11111234578899999765 4777899999988666
Q ss_pred cCCCceeEEE--ee-cC------CCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 321 QSSPPVLIAR--LS-HA------QSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 321 ~~~~~~~~~~--~~-~~------~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
+..+....++ +. |. ..-.+|++++|+|--..||||+.||.|.+||+.+
T Consensus 207 d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~ 263 (323)
T KOG1036|consen 207 DDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFN 263 (323)
T ss_pred CCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcc
Confidence 6542111111 11 11 1124799999999999999999999999999864
No 107
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=6.3e-29 Score=183.64 Aligned_cols=237 Identities=14% Similarity=0.220 Sum_probs=203.7
Q ss_pred CcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccC
Q 017553 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 160 (369)
Q Consensus 81 ~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 160 (369)
.|+.+++.+.+. .+|. +|++++.|.+..+|-..+|+.+.++.+|++.|+|+.... +...+++|+.|.++++||+++
T Consensus 8 GHERplTqiKyN--~eGD-LlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~-~s~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 8 GHERPLTQIKYN--REGD-LLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDW-DSKHLITGSADQTAKLWDVET 83 (327)
T ss_pred cCccccceEEec--CCCc-EEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecC-CcceeeeccccceeEEEEcCC
Confidence 688999999888 8899 999999999999999889999999999999999999998 889999999999999999999
Q ss_pred CcEEEEeeccCCCCCcEEEEEecCCCceEEEEEee-----CCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceee
Q 017553 161 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM-----DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI 235 (369)
Q Consensus 161 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (369)
|+++..++ ...+|..+.|++ ++++++.+.. .+.|.++|++.... ......|...
T Consensus 84 Gk~la~~k----~~~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~----------------~~~s~ep~~k 142 (327)
T KOG0643|consen 84 GKQLATWK----TNSPVKRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSS----------------DIDSEEPYLK 142 (327)
T ss_pred CcEEEEee----cCCeeEEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChh----------------hhcccCceEE
Confidence 99999997 788999999999 7777766543 46799999986221 1112456778
Q ss_pred eccCCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCC
Q 017553 236 ASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG 313 (369)
Q Consensus 236 ~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg 313 (369)
+..+...++.+-|. ++.|++|..||.|.+||+++++. .+.....|...|+.+.++++.. ++++++.|.
T Consensus 143 I~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~--------~v~s~~~h~~~Ind~q~s~d~T--~FiT~s~Dt 212 (327)
T KOG0643|consen 143 IPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKE--------LVDSDEEHSSKINDLQFSRDRT--YFITGSKDT 212 (327)
T ss_pred ecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCce--------eeechhhhccccccccccCCcc--eEEecccCc
Confidence 88888999999997 89999999999999999999864 6677778888999999999996 999999999
Q ss_pred eEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeec
Q 017553 314 KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCE 357 (369)
Q Consensus 314 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 357 (369)
+-++||..+.+ .++++. ...||++.+++|....++.|+.
T Consensus 213 takl~D~~tl~--v~Kty~---te~PvN~aaisP~~d~VilgGG 251 (327)
T KOG0643|consen 213 TAKLVDVRTLE--VLKTYT---TERPVNTAAISPLLDHVILGGG 251 (327)
T ss_pred cceeeecccee--eEEEee---ecccccceecccccceEEecCC
Confidence 99999999974 445553 2368999999998777766653
No 108
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=4.5e-29 Score=197.98 Aligned_cols=276 Identities=18% Similarity=0.295 Sum_probs=212.3
Q ss_pred EEEEecCCc--EEEEEecCCceeEEEeee-ccCCcccceeEEEeeecCCCccEEEEe-ecCCeEEEEEcCCccccceeec
Q 017553 51 VFATVGGNR--VTVYQCLEGGVIAALQSY-VDEDKEESFYTVSWACNVDGIPFLVAG-GINGIIRVIDVSNEKLHKSFVG 126 (369)
Q Consensus 51 ~la~~~~~~--v~iw~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~g~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~ 126 (369)
++.+.+.+. +.+||+.+|...-.+++- ....+ .+.. -.+. +++++ .....|.+|.+..........-
T Consensus 9 ~~sssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~-----sl~~---l~~~-yllsaq~~rp~l~vw~i~k~~~~~q~~v 79 (476)
T KOG0646|consen 9 VCSSSSFDPINCIVWDLRTGTSLLQYKGSYLAQAA-----SLTA---LNNE-YLLSAQLKRPLLHVWEILKKDQVVQYIV 79 (476)
T ss_pred EEeccCCCCcceeEEecCCCceeEEecCcccccch-----hhhh---hchh-heeeecccCccccccccCchhhhhhhcc
Confidence 334444454 899999999887777643 11111 1111 1234 45554 4556799999876655543334
Q ss_pred cccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccC
Q 017553 127 HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206 (369)
Q Consensus 127 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~ 206 (369)
-.++|.+++-+| .+.+|+.|+..|.|++|.+.+|..+..+. +|-..|+++.|+- ++.+|++|+.||.|.+|.+-.
T Consensus 80 ~Pg~v~al~s~n-~G~~l~ag~i~g~lYlWelssG~LL~v~~---aHYQ~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~ 154 (476)
T KOG0646|consen 80 LPGPVHALASSN-LGYFLLAGTISGNLYLWELSSGILLNVLS---AHYQSITCLKFSD-DGSHIITGSKDGAVLVWLLTD 154 (476)
T ss_pred cccceeeeecCC-CceEEEeecccCcEEEEEeccccHHHHHH---hhccceeEEEEeC-CCcEEEecCCCccEEEEEEEe
Confidence 568899999999 89999999899999999999999999887 7999999999997 999999999999999999876
Q ss_pred ceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee-C---cEEEEeecCCeEEEecCCCCCCCCCCCcccee
Q 017553 207 FWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-G---DFILSKSVDNEIVLWEPKMKEQSPGEGTADIL 282 (369)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~---~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 282 (369)
.-.. .......|...+..|.-+|+.+... | .++++++.|.++++||+..+. .+
T Consensus 155 lv~a--------------~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~---------LL 211 (476)
T KOG0646|consen 155 LVSA--------------DNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV---------LL 211 (476)
T ss_pred eccc--------------ccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccce---------ee
Confidence 2100 0011346788999999999999886 3 489999999999999999886 44
Q ss_pred eeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCc--------------eeEEEeecCCCcc--ceEEEEec
Q 017553 283 QKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP--------------VLIARLSHAQSKS--PIRQTAMS 346 (369)
Q Consensus 283 ~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~--------------~~~~~~~~~~~~~--~v~~~~~s 346 (369)
..+..+ ..+.+++..|.+. .+.+|+.+|.|.+.++..... ..+..+. +|.+ +|+|++.+
T Consensus 212 lti~fp-~si~av~lDpae~--~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~--Gh~~~~~ITcLais 286 (476)
T KOG0646|consen 212 LTITFP-SSIKAVALDPAER--VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLV--GHENESAITCLAIS 286 (476)
T ss_pred EEEecC-CcceeEEEccccc--EEEecCCcceEEeeehhcCCcccccccccccccccceeeeec--cccCCcceeEEEEe
Confidence 444433 5789999999986 899999999999998865431 1222233 6767 99999999
Q ss_pred CCCCEEEEeecCCeEEEEecCC
Q 017553 347 YDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 347 ~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
-||.+|++|+.||.|+|||+.+
T Consensus 287 ~DgtlLlSGd~dg~VcvWdi~S 308 (476)
T KOG0646|consen 287 TDGTLLLSGDEDGKVCVWDIYS 308 (476)
T ss_pred cCccEEEeeCCCCCEEEEecch
Confidence 9999999999999999999864
No 109
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.4e-29 Score=184.67 Aligned_cols=257 Identities=20% Similarity=0.283 Sum_probs=198.6
Q ss_pred ccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCC
Q 017553 30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING 108 (369)
Q Consensus 30 ~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg 108 (369)
.+|++-|..+...- +|.+||||+.|+ |+|+..........+..+. .|.++|..++|..-.-|. +|++++.||
T Consensus 8 t~H~D~IHda~lDy----ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~--Gh~GPVwqv~wahPk~G~-iLAScsYDg 80 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDY----YGKRLATCSSDGTVKIFEVRNNGQSKLLAELT--GHSGPVWKVAWAHPKFGT-ILASCSYDG 80 (299)
T ss_pred hhhhhhhhHhhhhh----hcceeeeecCCccEEEEEEcCCCCceeeeEec--CCCCCeeEEeecccccCc-EeeEeecCc
Confidence 57999999988877 699999999999 9999998766533333322 699999999998544677 999999999
Q ss_pred eEEEEEcCCcc--ccceeeccccceEEEEecCCC-CceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCC
Q 017553 109 IIRVIDVSNEK--LHKSFVGHGDSINEIRTQPLK-PSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS 185 (369)
Q Consensus 109 ~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 185 (369)
.|.||.-.+++ .......|...|++++|.|.+ +-.|++++.||.|.|.+.++...-..-+....|.-.|++++|.|.
T Consensus 81 kVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa 160 (299)
T KOG1332|consen 81 KVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPA 160 (299)
T ss_pred eEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCc
Confidence 99999987774 345666899999999999954 447889999999999998765211111112279999999999982
Q ss_pred C--c-----------eEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee---
Q 017553 186 D--I-----------YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--- 249 (369)
Q Consensus 186 ~--~-----------~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--- 249 (369)
. + ..|++|+.|..|+||+.....- ..-..+.+|.+.|+.++|.
T Consensus 161 ~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w---------------------~~e~~l~~H~dwVRDVAwaP~~ 219 (299)
T KOG1332|consen 161 SAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSW---------------------KLERTLEGHKDWVRDVAWAPSV 219 (299)
T ss_pred CCCccccccCcccccceeeccCCccceeeeecCCcch---------------------hhhhhhhhcchhhhhhhhcccc
Confidence 1 2 5699999999999999988421 1223478999999999997
Q ss_pred ---CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccC
Q 017553 250 ---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS 322 (369)
Q Consensus 250 ---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~ 322 (369)
..+++++++||++.||..+.. ..+. ..+++.. ....+..+.||..|. +|++++.|+.|.+|.-+.
T Consensus 220 gl~~s~iAS~SqDg~viIwt~~~e-~e~w--k~tll~~---f~~~~w~vSWS~sGn--~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 220 GLPKSTIASCSQDGTVIIWTKDEE-YEPW--KKTLLEE---FPDVVWRVSWSLSGN--ILAVSGGDNKVTLWKENV 287 (299)
T ss_pred CCCceeeEEecCCCcEEEEEecCc-cCcc--ccccccc---CCcceEEEEEecccc--EEEEecCCcEEEEEEeCC
Confidence 238999999999999988732 1111 1112333 346789999999995 999999999999997553
No 110
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=4.7e-29 Score=196.15 Aligned_cols=265 Identities=15% Similarity=0.234 Sum_probs=213.5
Q ss_pred cccccccccccccccccceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcc
Q 017553 5 AIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKE 83 (369)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~ 83 (369)
.+|+++....+. +.+.-+....|+||.-.|+.+.|+| +...+++++.|. |+||............ .|+
T Consensus 235 lTGG~d~~av~~--d~~s~q~l~~~~Gh~kki~~v~~~~----~~~~v~~aSad~~i~vws~~~~s~~~~~~-----~h~ 303 (506)
T KOG0289|consen 235 LTGGEDKTAVLF--DKPSNQILATLKGHTKKITSVKFHK----DLDTVITASADEIIRVWSVPLSSEPTSSR-----PHE 303 (506)
T ss_pred eecCCCCceEEE--ecchhhhhhhccCcceEEEEEEecc----chhheeecCCcceEEeeccccccCccccc-----ccc
Confidence 345555443333 3455566677899999999999999 578899999999 9999987776555554 688
Q ss_pred cceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeec--cccceEEEEecCCCCceEEEEeCCCcEEEEEccCC
Q 017553 84 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG--HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG 161 (369)
Q Consensus 84 ~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~ 161 (369)
++|+.+... |.|. ||++++.||.....|++++..+..... ..-.+++.+|+| |+.+|.+|..||.|+|||+.++
T Consensus 304 ~~V~~ls~h--~tge-YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~ 379 (506)
T KOG0289|consen 304 EPVTGLSLH--PTGE-YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQ 379 (506)
T ss_pred ccceeeeec--cCCc-EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCc
Confidence 999999888 8899 999999999999999999987766553 224689999999 9999999999999999999999
Q ss_pred cEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeecc-CC
Q 017553 162 ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV-HS 240 (369)
Q Consensus 162 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 240 (369)
..+..|. +|.++|..++|+. +|.+|++++.|+.|++||+|.... ...+.. ..
T Consensus 380 ~~~a~Fp---ght~~vk~i~FsE-NGY~Lat~add~~V~lwDLRKl~n-----------------------~kt~~l~~~ 432 (506)
T KOG0289|consen 380 TNVAKFP---GHTGPVKAISFSE-NGYWLATAADDGSVKLWDLRKLKN-----------------------FKTIQLDEK 432 (506)
T ss_pred cccccCC---CCCCceeEEEecc-CceEEEEEecCCeEEEEEehhhcc-----------------------cceeecccc
Confidence 8888887 8999999999998 999999999999999999998321 112211 12
Q ss_pred Cceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEE
Q 017553 241 NYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW 318 (369)
Q Consensus 241 ~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~ 318 (369)
..+.++.|+ |.+|+.++.|=.|++++-.+. ....+..+..|.+..+.+.|....+ ++++++.|..++++
T Consensus 433 ~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k-------~W~~~~~~~~~sg~st~v~Fg~~aq--~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 433 KEVNSLSFDQSGTYLGIAGSDLQVYICKKKTK-------SWTEIKELADHSGLSTGVRFGEHAQ--YLASTSMDAILRLY 503 (506)
T ss_pred ccceeEEEcCCCCeEEeecceeEEEEEecccc-------cceeeehhhhcccccceeeecccce--EEeeccchhheEEe
Confidence 367888887 999999988877777775543 2346777777777888999998885 99999999988887
Q ss_pred Ec
Q 017553 319 EL 320 (369)
Q Consensus 319 d~ 320 (369)
.+
T Consensus 504 a~ 505 (506)
T KOG0289|consen 504 AL 505 (506)
T ss_pred ec
Confidence 54
No 111
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.3e-28 Score=195.10 Aligned_cols=291 Identities=14% Similarity=0.179 Sum_probs=221.6
Q ss_pred CCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeE
Q 017553 32 GKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGII 110 (369)
Q Consensus 32 h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i 110 (369)
..+.|++|.|+| ...+|.+|+.|+ ++||.+. |+....++... -..-+|.+.+|. |+|...+++++....+
T Consensus 212 s~~~I~sv~FHp----~~plllvaG~d~~lrifqvD-Gk~N~~lqS~~--l~~fPi~~a~f~--p~G~~~i~~s~rrky~ 282 (514)
T KOG2055|consen 212 SHGGITSVQFHP----TAPLLLVAGLDGTLRIFQVD-GKVNPKLQSIH--LEKFPIQKAEFA--PNGHSVIFTSGRRKYL 282 (514)
T ss_pred CcCCceEEEecC----CCceEEEecCCCcEEEEEec-CccChhheeee--eccCccceeeec--CCCceEEEecccceEE
Confidence 357899999999 578999999999 9999964 33333444332 245678888888 8998789999999999
Q ss_pred EEEEcCCccc--cceeeccc-cceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCc
Q 017553 111 RVIDVSNEKL--HKSFVGHG-DSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDI 187 (369)
Q Consensus 111 ~vwd~~~~~~--~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 187 (369)
+.||+.+.+. +..+.++. ..+.....+| ++++|+..+..|.|.+....+++.+..++ -.+.|..++|+. ++
T Consensus 283 ysyDle~ak~~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT~eli~s~K----ieG~v~~~~fsS-ds 356 (514)
T KOG2055|consen 283 YSYDLETAKVTKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKTKELITSFK----IEGVVSDFTFSS-DS 356 (514)
T ss_pred EEeeccccccccccCCCCcccchhheeEecC-CCCeEEEcccCceEEeehhhhhhhhheee----eccEEeeEEEec-CC
Confidence 9999988764 33444444 4577788899 88899999999999999999999999998 789999999997 78
Q ss_pred eEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeecc---CCCceeeeeeeCcEEEEeecCCeEEE
Q 017553 188 YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV---HSNYVDCNRWLGDFILSKSVDNEIVL 264 (369)
Q Consensus 188 ~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~l~~~~~d~~i~i 264 (369)
..|++++.+|.|.+||++.... +..+.. -.+.-.|++.++.++++|+..|.|.|
T Consensus 357 k~l~~~~~~GeV~v~nl~~~~~-----------------------~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNI 413 (514)
T KOG2055|consen 357 KELLASGGTGEVYVWNLRQNSC-----------------------LHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNI 413 (514)
T ss_pred cEEEEEcCCceEEEEecCCcce-----------------------EEEEeecCccceeeeeecCCCceEEeccCcceEEE
Confidence 8888888999999999998421 111111 11222333445899999999999999
Q ss_pred ecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEe--cCCCeEEEEEccCCCceeEEEee-cCCCccceE
Q 017553 265 WEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG--NREGKIFVWELQSSPPVLIARLS-HAQSKSPIR 341 (369)
Q Consensus 265 ~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~v~ 341 (369)
||.++...... .+++..+..-...|+++.|+++.+ +||.+ ..+..+++-.+.+.. ....++ ....-+.|+
T Consensus 414 Yd~~s~~~s~~---PkPik~~dNLtt~Itsl~Fn~d~q--iLAiaS~~~knalrLVHvPS~T--VFsNfP~~n~~vg~vt 486 (514)
T KOG2055|consen 414 YDGNSCFASTN---PKPIKTVDNLTTAITSLQFNHDAQ--ILAIASRVKKNALRLVHVPSCT--VFSNFPTSNTKVGHVT 486 (514)
T ss_pred eccchhhccCC---CCchhhhhhhheeeeeeeeCcchh--hhhhhhhccccceEEEecccee--eeccCCCCCCcccceE
Confidence 99876543222 224455555567899999999997 55544 467889999887752 333333 223346799
Q ss_pred EEEecCCCCEEEEeecCCeEEEEecC
Q 017553 342 QTAMSYDGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 342 ~~~~s~~~~~l~s~~~dg~i~vw~~~ 367 (369)
||+|||.+.+||.|..+|.|.+|.+.
T Consensus 487 c~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 487 CMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred EEEecCCCceEEeecCCCceeeEeec
Confidence 99999999999999999999999875
No 112
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.8e-30 Score=211.41 Aligned_cols=240 Identities=22% Similarity=0.349 Sum_probs=200.3
Q ss_pred CCCccEEEEeecCCeEEEEEcCCcc------ccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCC--cEEEE
Q 017553 95 VDGIPFLVAGGINGIIRVIDVSNEK------LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG--ICILI 166 (369)
Q Consensus 95 ~~g~~~l~~~~~dg~i~vwd~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~--~~~~~ 166 (369)
|.++ +|++|+.||.|++|++.... ...++..|.+.|+.+.... +++.|+++|.|-+|++|+...+ -++..
T Consensus 35 ~~~r-yLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~-~~~tlIS~SsDtTVK~W~~~~~~~~c~st 112 (735)
T KOG0308|consen 35 PNGR-YLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCG-NGKTLISASSDTTVKVWNAHKDNTFCMST 112 (735)
T ss_pred CCCc-eEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhc-CCCceEEecCCceEEEeecccCcchhHhh
Confidence 4555 99999999999999986432 3678889999999999998 8889999999999999999877 45555
Q ss_pred eeccCCCCCcEEEEEe-cCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeec-cCCCcee
Q 017553 167 FAGAGGHRNEVLSVDF-HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS-VHSNYVD 244 (369)
Q Consensus 167 ~~~~~~~~~~v~~~~~-~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~ 244 (369)
+. .|.+.|.|+++ .+ +..++++||.|+.|.+||+..+.......+. ..+...+. ++...|.
T Consensus 113 ir---~H~DYVkcla~~ak-~~~lvaSgGLD~~IflWDin~~~~~l~~s~n-------------~~t~~sl~sG~k~siY 175 (735)
T KOG0308|consen 113 IR---THKDYVKCLAYIAK-NNELVASGGLDRKIFLWDINTGTATLVASFN-------------NVTVNSLGSGPKDSIY 175 (735)
T ss_pred hh---cccchheeeeeccc-CceeEEecCCCccEEEEEccCcchhhhhhcc-------------ccccccCCCCCcccee
Confidence 65 79999999999 55 8899999999999999999985321111111 11222333 7888999
Q ss_pred eeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccC
Q 017553 245 CNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS 322 (369)
Q Consensus 245 ~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~ 322 (369)
+++.+ |..+++|+..+.+++||.++.+ .+..+.+|...|..+..++||. .+++++.||+|++||+..
T Consensus 176 SLA~N~t~t~ivsGgtek~lr~wDprt~~---------kimkLrGHTdNVr~ll~~dDGt--~~ls~sSDgtIrlWdLgq 244 (735)
T KOG0308|consen 176 SLAMNQTGTIIVSGGTEKDLRLWDPRTCK---------KIMKLRGHTDNVRVLLVNDDGT--RLLSASSDGTIRLWDLGQ 244 (735)
T ss_pred eeecCCcceEEEecCcccceEEecccccc---------ceeeeeccccceEEEEEcCCCC--eEeecCCCceEEeeeccc
Confidence 99998 6699999999999999999987 5777889999999999999996 899999999999999988
Q ss_pred CCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 323 SPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 323 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
. ..+..+. .|...|.++..+|+-..+.+|+.||.|+.=|+.+
T Consensus 245 Q--rCl~T~~--vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 245 Q--RCLATYI--VHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRN 286 (735)
T ss_pred c--ceeeeEE--eccCceEEEeeCCCcceEEecCCCCcEEecccCC
Confidence 7 4555566 7778899999999999999999999999877754
No 113
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=3.1e-27 Score=170.85 Aligned_cols=261 Identities=14% Similarity=0.188 Sum_probs=204.3
Q ss_pred eeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCC--Ccc
Q 017553 23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD--GIP 99 (369)
Q Consensus 23 ~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--g~~ 99 (369)
..+.+.-+.|.+.|+|.+||| +|+++|+|+.|+ |++.-.........-......-|.+.|..++|.-.|. |.
T Consensus 79 ~v~~kr~khhkgsiyc~~ws~----~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~- 153 (350)
T KOG0641|consen 79 SVLCKRNKHHKGSIYCTAWSP----CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA- 153 (350)
T ss_pred eEEeeeccccCccEEEEEecC----ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-
Confidence 333444578999999999999 799999999999 8876654333322222222235889999999985553 44
Q ss_pred EEEEee-cCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccC----CCC
Q 017553 100 FLVAGG-INGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAG----GHR 174 (369)
Q Consensus 100 ~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~----~~~ 174 (369)
+|++++ .|..|++-|-.+|+..+.+.+|++-|.++-- - ++-++++|+.|.+|++||++-..++..+..-. -..
T Consensus 154 il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalys-w-n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~gles 231 (350)
T KOG0641|consen 154 ILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYS-W-NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLES 231 (350)
T ss_pred EEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEE-e-cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCccc
Confidence 666654 5778999999999999999999998877632 1 57899999999999999999988888776321 113
Q ss_pred CcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcE
Q 017553 175 NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDF 252 (369)
Q Consensus 175 ~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~ 252 (369)
..|.+++..| .+++|++|-.|....+||++. ..++..+..|...|.|+.|+ -.+
T Consensus 232 savaav~vdp-sgrll~sg~~dssc~lydirg-----------------------~r~iq~f~phsadir~vrfsp~a~y 287 (350)
T KOG0641|consen 232 SAVAAVAVDP-SGRLLASGHADSSCMLYDIRG-----------------------GRMIQRFHPHSADIRCVRFSPGAHY 287 (350)
T ss_pred ceeEEEEECC-CcceeeeccCCCceEEEEeeC-----------------------CceeeeeCCCccceeEEEeCCCceE
Confidence 5689999999 999999999999999999999 56788888999999999999 459
Q ss_pred EEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEcc
Q 017553 253 ILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ 321 (369)
Q Consensus 253 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~ 321 (369)
+++++.|..|++-|+...-. ..-++.....|...+..+.|.|.. .-+++.+.|.++.+|-+.
T Consensus 288 llt~syd~~ikltdlqgdla-----~el~~~vv~ehkdk~i~~rwh~~d--~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 288 LLTCSYDMKIKLTDLQGDLA-----HELPIMVVAEHKDKAIQCRWHPQD--FSFISSSADKTATLWALN 349 (350)
T ss_pred EEEecccceEEEeecccchh-----hcCceEEEEeccCceEEEEecCcc--ceeeeccCcceEEEeccC
Confidence 99999999999999875421 111334445567778889999987 478889999999999764
No 114
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.97 E-value=1.7e-28 Score=189.76 Aligned_cols=254 Identities=17% Similarity=0.265 Sum_probs=198.8
Q ss_pred CcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCC----------------ccccceeeccccceEEEEecCCCCceE
Q 017553 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN----------------EKLHKSFVGHGDSINEIRTQPLKPSLV 144 (369)
Q Consensus 81 ~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~----------------~~~~~~~~~~~~~v~~~~~~~~~~~~l 144 (369)
.|.+.++.+....-++.. +.++-+..|.|+||++.. .+++.++.+|...=..++|+|.....|
T Consensus 149 ~h~g~~NRvr~~~~~~~~-~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEV-LCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred ccccccceeeecccCCcc-eeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 456666666666334444 777778999999999843 246778889999999999999666679
Q ss_pred EEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCC
Q 017553 145 VSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKF 224 (369)
Q Consensus 145 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~ 224 (369)
++|..-+.|++|...+|.-..--..+.+|+..|-.++|+|....+|++|+.||+|+|||+|.+.
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~---------------- 291 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGP---------------- 291 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCC----------------
Confidence 9999899999999998876544444448999999999999888999999999999999999842
Q ss_pred CCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCC
Q 017553 225 PTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFH 302 (369)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 302 (369)
..+......|...|..+.|+ ..+|++|+.||+++|||+++.+. ..++..++.|..+|+++.|+|...
T Consensus 292 -----~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~------~~pVA~fk~Hk~pItsieW~p~e~ 360 (440)
T KOG0302|consen 292 -----KKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKS------GQPVATFKYHKAPITSIEWHPHED 360 (440)
T ss_pred -----ccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccC------CCcceeEEeccCCeeEEEeccccC
Confidence 12333448899999999998 33899999999999999998763 257899999999999999999877
Q ss_pred ccEEEEecCCCeEEEEEccCCCc------e---------eEEEeecCCCccceEEEEecCCC-CEEEEeecCCeEEEEe
Q 017553 303 YNAAAIGNREGKIFVWELQSSPP------V---------LIARLSHAQSKSPIRQTAMSYDG-STILSCCEDGAIWRWD 365 (369)
Q Consensus 303 ~~~l~~~~~dg~i~i~d~~~~~~------~---------~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~vw~ 365 (369)
..+++++.|.+|.+||+.-..- . +...+-| .....+..+.|+++- .+|++.+.|| +.||.
T Consensus 361 -s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVH-qGQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 361 -SVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVH-QGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred -ceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEe-cchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 5888999999999999864321 0 0011112 123568889999864 4888888898 56664
No 115
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=8.5e-28 Score=196.53 Aligned_cols=292 Identities=15% Similarity=0.184 Sum_probs=223.2
Q ss_pred cccee--eeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCC
Q 017553 20 KREYR--VTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD 96 (369)
Q Consensus 20 ~~~~~--~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 96 (369)
.++|. +...+++|++.|.+|...| .|.+||+|++|+ |+||.+.+|.++..++ ..+.|.+++|++.++
T Consensus 385 LrPFPt~~~lvyrGHtg~Vr~iSvdp----~G~wlasGsdDGtvriWEi~TgRcvr~~~------~d~~I~~vaw~P~~~ 454 (733)
T KOG0650|consen 385 LRPFPTRCALVYRGHTGLVRSISVDP----SGEWLASGSDDGTVRIWEIATGRCVRTVQ------FDSEIRSVAWNPLSD 454 (733)
T ss_pred cCCCcceeeeeEeccCCeEEEEEecC----CcceeeecCCCCcEEEEEeecceEEEEEe------ecceeEEEEecCCCC
Confidence 44554 4455689999999999999 699999999999 9999999999999987 566899999996665
Q ss_pred CccEEEEeecCCeEEEEEcCCc---------------------------------c----ccceeeccccceEEEEecCC
Q 017553 97 GIPFLVAGGINGIIRVIDVSNE---------------------------------K----LHKSFVGHGDSINEIRTQPL 139 (369)
Q Consensus 97 g~~~l~~~~~dg~i~vwd~~~~---------------------------------~----~~~~~~~~~~~v~~~~~~~~ 139 (369)
-. +||++-... +.+.+..-| . -++....|...|..+.|+.
T Consensus 455 ~~-vLAvA~~~~-~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr- 531 (733)
T KOG0650|consen 455 LC-VLAVAVGEC-VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR- 531 (733)
T ss_pred ce-eEEEEecCc-eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec-
Confidence 55 555554333 444432111 0 0122234778999999999
Q ss_pred CCceEEEEeCC---CcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeee
Q 017553 140 KPSLVVSASKD---ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFT 216 (369)
Q Consensus 140 ~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~ 216 (369)
.|.+|++...+ ..|.|.++........|. ...+.|.++.|+| ...+|++++. ..|++||+..
T Consensus 532 kGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~---kskG~vq~v~FHP-s~p~lfVaTq-~~vRiYdL~k---------- 596 (733)
T KOG0650|consen 532 KGDYLATVMPDSGNKSVLIHQLSKRKSQSPFR---KSKGLVQRVKFHP-SKPYLFVATQ-RSVRIYDLSK---------- 596 (733)
T ss_pred CCceEEEeccCCCcceEEEEecccccccCchh---hcCCceeEEEecC-CCceEEEEec-cceEEEehhH----------
Confidence 89999987653 578999998776666665 4667899999999 6666666664 6899999987
Q ss_pred ccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeE
Q 017553 217 WTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWF 294 (369)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 294 (369)
+..+..+......|..++.+ |+.++.++.|+.+..||+.-... +.+.+..|...+.+
T Consensus 597 -------------qelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlssk--------Pyk~lr~H~~avr~ 655 (733)
T KOG0650|consen 597 -------------QELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSK--------PYKTLRLHEKAVRS 655 (733)
T ss_pred -------------HHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcc--------hhHHhhhhhhhhhh
Confidence 23334444445556666665 89999999999999999986543 67788889999999
Q ss_pred EEEeecCCccEEEEecCCCeEEEEEcc-------CCCceeEEEeecCCCccc----eEEEEecCCCCEEEEeecCCeEEE
Q 017553 295 IKFSCDFHYNAAAIGNREGKIFVWELQ-------SSPPVLIARLSHAQSKSP----IRQTAMSYDGSTILSCCEDGAIWR 363 (369)
Q Consensus 295 ~~~s~~~~~~~l~~~~~dg~i~i~d~~-------~~~~~~~~~~~~~~~~~~----v~~~~~s~~~~~l~s~~~dg~i~v 363 (369)
++|++.-. ++++|+.||.+.||.-. +.-...+..+. +|... |..+.|+|...+|++++.||+|++
T Consensus 656 Va~H~ryP--Lfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~--gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirl 731 (733)
T KOG0650|consen 656 VAFHKRYP--LFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLR--GHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRL 731 (733)
T ss_pred hhhccccc--eeeeecCCCcEEEEeeeeehhhhcCCceEeeeecc--CceeecccceEeecccCCCceEEecCCCceEEe
Confidence 99998765 99999999999998632 23234555665 66544 899999999999999999999999
Q ss_pred E
Q 017553 364 W 364 (369)
Q Consensus 364 w 364 (369)
|
T Consensus 732 f 732 (733)
T KOG0650|consen 732 F 732 (733)
T ss_pred e
Confidence 8
No 116
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.2e-27 Score=178.97 Aligned_cols=264 Identities=17% Similarity=0.290 Sum_probs=193.6
Q ss_pred CcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCc----cccceeeccccceEEEEec-CCCCceEEEEeCCCcEEE
Q 017553 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE----KLHKSFVGHGDSINEIRTQ-PLKPSLVVSASKDESVRL 155 (369)
Q Consensus 81 ~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~-~~~~~~l~s~~~dg~i~v 155 (369)
.|.+-|.++.|. +.|+ .+++++.|++|+|||.+.. .+....+.|.+.|..+.|. |.-|+.+++++.|+++.|
T Consensus 11 ~h~DlihdVs~D--~~GR-RmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 11 GHKDLIHDVSFD--FYGR-RMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred CCcceeeeeeec--ccCc-eeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence 577788899888 6698 9999999999999997543 3566778899999999995 445789999999999999
Q ss_pred EEccC------Cc---EEEEeeccCCCCCcEEEEEecCC-CceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCC
Q 017553 156 WNVQT------GI---CILIFAGAGGHRNEVLSVDFHPS-DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFP 225 (369)
Q Consensus 156 wd~~~------~~---~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~ 225 (369)
|.-.. +. ...++. .....|+++.|.|. -|-.+++++.||.+|||+.........-.+.
T Consensus 88 WEE~~~~~~~~~~~Wv~~ttl~---DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq--------- 155 (361)
T KOG2445|consen 88 WEEQEKSEEAHGRRWVRRTTLV---DSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQ--------- 155 (361)
T ss_pred eeecccccccccceeEEEEEee---cCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhh---------
Confidence 98521 11 122333 56788999999982 4678999999999999998773221111100
Q ss_pred CceeecceeeeccCCCceeeeeee-----CcEEEEeecC-----CeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEE
Q 017553 226 TKYVQFPVFIASVHSNYVDCNRWL-----GDFILSKSVD-----NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFI 295 (369)
Q Consensus 226 ~~~~~~~~~~~~~~~~~v~~~~~~-----~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 295 (369)
...+........+.....|+.|+ ..+|++|+.+ +.+.||....... ....+.++..+..+|+.+
T Consensus 156 -~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~r-----Kw~kva~L~d~~dpI~di 229 (361)
T KOG2445|consen 156 -HEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGR-----KWLKVAELPDHTDPIRDI 229 (361)
T ss_pred -hhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcc-----eeeeehhcCCCCCcceee
Confidence 00000111223455667788887 4477777665 4788887765532 233567778899999999
Q ss_pred EEeecCC--ccEEEEecCCCeEEEEEccCCC----------c-----eeEEEee-cCCCccceEEEEecCCCCEEEEeec
Q 017553 296 KFSCDFH--YNAAAIGNREGKIFVWELQSSP----------P-----VLIARLS-HAQSKSPIRQTAMSYDGSTILSCCE 357 (369)
Q Consensus 296 ~~s~~~~--~~~l~~~~~dg~i~i~d~~~~~----------~-----~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~ 357 (369)
+|.|+-. +.+||+++.|| |+||.+.... + ..+..+. +.+|.+.|..+.|+-.|..|++.|.
T Consensus 230 ~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGd 308 (361)
T KOG2445|consen 230 SWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGD 308 (361)
T ss_pred eeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCC
Confidence 9999853 56899999999 9999987411 0 1122222 4589999999999999999999999
Q ss_pred CCeEEEEec
Q 017553 358 DGAIWRWDA 366 (369)
Q Consensus 358 dg~i~vw~~ 366 (369)
||.||+|..
T Consensus 309 DG~VRLWka 317 (361)
T KOG2445|consen 309 DGCVRLWKA 317 (361)
T ss_pred Cceeeehhh
Confidence 999999975
No 117
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.2e-28 Score=185.46 Aligned_cols=242 Identities=18% Similarity=0.310 Sum_probs=207.2
Q ss_pred CcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEc--
Q 017553 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV-- 158 (369)
Q Consensus 81 ~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~-- 158 (369)
.|+..|+.++.. .+++++.+++.|.+-+||.+++++++.++.+|.+.|+++.|++ .+.++++++.|++-.||..
T Consensus 146 GHkDGiW~Vaa~---~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~-s~~L~lTaSGD~taHIW~~av 221 (481)
T KOG0300|consen 146 GHKDGIWHVAAD---STQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHN-SGLLLLTASGDETAHIWKAAV 221 (481)
T ss_pred ccccceeeehhh---cCCcceeecccccceeEEeeccccceeeecccccceeeEEecc-ccceEEEccCCcchHHHHHhh
Confidence 688899998874 3455899999999999999999999999999999999999999 8999999999999999962
Q ss_pred ----cC------------------------------C----cEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEE
Q 017553 159 ----QT------------------------------G----ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVK 200 (369)
Q Consensus 159 ----~~------------------------------~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~ 200 (369)
.. + .++..+. +|...|.+..|.. ++..+++++.|.+..
T Consensus 222 ~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~lt---gH~~vV~a~dWL~-gg~Q~vTaSWDRTAn 297 (481)
T KOG0300|consen 222 NWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLT---GHRAVVSACDWLA-GGQQMVTASWDRTAN 297 (481)
T ss_pred cCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeee---ccccceEehhhhc-Ccceeeeeeccccce
Confidence 10 0 1223333 8999999999998 999999999999999
Q ss_pred EEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCc
Q 017553 201 IWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGT 278 (369)
Q Consensus 201 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 278 (369)
+||+++ ..++..+.+|....+.++-. .+++++.+.|.+.++||++..-
T Consensus 298 lwDVEt-----------------------ge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI------- 347 (481)
T KOG0300|consen 298 LWDVET-----------------------GEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAI------- 347 (481)
T ss_pred eeeecc-----------------------CceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhc-------
Confidence 999999 55778888999988887776 5688899999999999998532
Q ss_pred cceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecC
Q 017553 279 ADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCED 358 (369)
Q Consensus 279 ~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 358 (369)
..+..+++|...|+++.|..+. .+++|+.|.+|++||+++.. ..+..+.. ..+++.++.+..+..|+.--.+
T Consensus 348 -~sV~VFQGHtdtVTS~vF~~dd---~vVSgSDDrTvKvWdLrNMR-splATIRt---dS~~NRvavs~g~~iIAiPhDN 419 (481)
T KOG0300|consen 348 -QSVAVFQGHTDTVTSVVFNTDD---RVVSGSDDRTVKVWDLRNMR-SPLATIRT---DSPANRVAVSKGHPIIAIPHDN 419 (481)
T ss_pred -ceeeeecccccceeEEEEecCC---ceeecCCCceEEEeeecccc-Ccceeeec---CCccceeEeecCCceEEeccCC
Confidence 3688899999999999999987 59999999999999999875 34455542 2789999999988899999999
Q ss_pred CeEEEEecCC
Q 017553 359 GAIWRWDAIP 368 (369)
Q Consensus 359 g~i~vw~~~~ 368 (369)
..|++||++.
T Consensus 420 RqvRlfDlnG 429 (481)
T KOG0300|consen 420 RQVRLFDLNG 429 (481)
T ss_pred ceEEEEecCC
Confidence 9999999863
No 118
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.96 E-value=1.2e-27 Score=198.76 Aligned_cols=347 Identities=16% Similarity=0.169 Sum_probs=251.2
Q ss_pred ccccccccccccccccccceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeE----------
Q 017553 4 TAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIA---------- 72 (369)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~---------- 72 (369)
+|.|+......+......+|+.+..+.||.+.|.+++|..... +.-+||+++.|. |+||.+.-+....
T Consensus 162 la~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~-~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~ 240 (764)
T KOG1063|consen 162 LACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGG-DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTT 240 (764)
T ss_pred EEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCC-CcEEEEecCCceEEEEEEEEecCCcccccccccccc
Confidence 3556666666666666778999999999999999999997432 356899999999 9999986433111
Q ss_pred -----------EEe-----eeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccc-------cceeecccc
Q 017553 73 -----------ALQ-----SYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL-------HKSFVGHGD 129 (369)
Q Consensus 73 -----------~~~-----~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~-------~~~~~~~~~ 129 (369)
.++ .-....|++-|+++.|. |.+. .|++++.|.++.+|...+..- +..+.+...
T Consensus 241 ~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~--p~~~-~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~ 317 (764)
T KOG1063|consen 241 LSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWH--PEGL-DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAG 317 (764)
T ss_pred ccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEc--cchh-hheecccCcceEEEecCCccceEEEEEEeeccccccc
Confidence 111 00112689999999999 8897 899999999999998765421 222334455
Q ss_pred ceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCcee
Q 017553 130 SINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWT 209 (369)
Q Consensus 130 ~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~ 209 (369)
......|+| +++.+++-+.-|..++|..+....-.......+|.+.|.+++|+| .+.+|++.+.|.+-|+|-.-..+.
T Consensus 318 GF~g~lw~~-n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~p-sGeflLsvs~DQTTRlFa~wg~q~ 395 (764)
T KOG1063|consen 318 GFWGGLWSP-NSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDP-SGEFLLSVSLDQTTRLFARWGRQQ 395 (764)
T ss_pred ceeeEEEcC-CCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecC-CCCEEEEeccccceeeeccccccc
Confidence 688999999 889999999999999998443332222233448999999999999 889999999999988875431000
Q ss_pred ---------------------------------eeeeeeecc----------------C----------------CCCCC
Q 017553 210 ---------------------------------YVEKSFTWT----------------D----------------LPSKF 224 (369)
Q Consensus 210 ---------------------------------~~~~~~~~~----------------~----------------~~~~~ 224 (369)
...+.+... + ....+
T Consensus 396 ~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~ 475 (764)
T KOG1063|consen 396 EWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFF 475 (764)
T ss_pred ceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCc
Confidence 000000000 0 00000
Q ss_pred C---------------------Cc-------------eeecceeeeccCCCceeeeeee--CcEEEEeecCC-----eEE
Q 017553 225 P---------------------TK-------------YVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDN-----EIV 263 (369)
Q Consensus 225 ~---------------------~~-------------~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~-----~i~ 263 (369)
+ .. ..-..+..+.+|...|.+++.+ ++++++++... .|+
T Consensus 476 ~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~ 555 (764)
T KOG1063|consen 476 PGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIR 555 (764)
T ss_pred ccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEE
Confidence 0 00 0001133556788999999998 88999988754 499
Q ss_pred EecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEee-cCCCccceEE
Q 017553 264 LWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLS-HAQSKSPIRQ 342 (369)
Q Consensus 264 i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~v~~ 342 (369)
+|+..+.. ..+.+..|.-.|+.++||||++ +|++.+.|.++.+|....... ....+. ...|.--|.+
T Consensus 556 lw~t~~W~---------~~~~L~~HsLTVT~l~FSpdg~--~LLsvsRDRt~sl~~~~~~~~-~e~~fa~~k~HtRIIWd 623 (764)
T KOG1063|consen 556 LWNTANWL---------QVQELEGHSLTVTRLAFSPDGR--YLLSVSRDRTVSLYEVQEDIK-DEFRFACLKAHTRIIWD 623 (764)
T ss_pred EEeccchh---------hhheecccceEEEEEEECCCCc--EEEEeecCceEEeeeeecccc-hhhhhccccccceEEEE
Confidence 99998776 5667888999999999999997 999999999999999865431 112211 3378889999
Q ss_pred EEecCCCCEEEEeecCCeEEEEecCC
Q 017553 343 TAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 343 ~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
+.|+|++.+++|+|.|..|+||....
T Consensus 624 csW~pde~~FaTaSRDK~VkVW~~~~ 649 (764)
T KOG1063|consen 624 CSWSPDEKYFATASRDKKVKVWEEPD 649 (764)
T ss_pred cccCcccceeEEecCCceEEEEeccC
Confidence 99999999999999999999998764
No 119
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=9.1e-29 Score=186.75 Aligned_cols=256 Identities=20% Similarity=0.259 Sum_probs=197.7
Q ss_pred eeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEE
Q 017553 24 RVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLV 102 (369)
Q Consensus 24 ~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~ 102 (369)
.++++|-.|.++|+++.|+| ...+|++++.|+ |+++|..+....+.++.+ ....+|.+++|. |.|. +|+
T Consensus 163 PvIRTlYDH~devn~l~FHP----re~ILiS~srD~tvKlFDfsK~saKrA~K~~---qd~~~vrsiSfH--PsGe-fll 232 (430)
T KOG0640|consen 163 PVIRTLYDHVDEVNDLDFHP----RETILISGSRDNTVKLFDFSKTSAKRAFKVF---QDTEPVRSISFH--PSGE-FLL 232 (430)
T ss_pred ceEeehhhccCcccceeecc----hhheEEeccCCCeEEEEecccHHHHHHHHHh---hccceeeeEeec--CCCc-eEE
Confidence 56778889999999999999 579999999999 999998876555444433 245678888777 9999 999
Q ss_pred EeecCCeEEEEEcCCcccccee---eccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCC-cEE
Q 017553 103 AGGINGIIRVIDVSNEKLHKSF---VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRN-EVL 178 (369)
Q Consensus 103 ~~~~dg~i~vwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~v~ 178 (369)
+|....++++||+++-++...- ..|++.|+++.+++ .+++.++++.||.|++||--+++++.++.. .|.+ .|.
T Consensus 233 vgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~t~~~--AH~gsevc 309 (430)
T KOG0640|consen 233 VGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVRTIGN--AHGGSEVC 309 (430)
T ss_pred EecCCCceeEEeccceeEeeecCcccccccceeEEEecC-CccEEEEeccCCcEEeeccccHHHHHHHHh--hcCCceee
Confidence 9999999999999988764333 36999999999999 899999999999999999999999999876 5654 688
Q ss_pred EEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEe
Q 017553 179 SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSK 256 (369)
Q Consensus 179 ~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~ 256 (369)
+..|.. +++++++.+.|..+++|.+.++....+..-.... +...--+...|+ .++++.-
T Consensus 310 Sa~Ftk-n~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~t------------------grq~~rtqAvFNhtEdyVl~p 370 (430)
T KOG0640|consen 310 SAVFTK-NGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTT------------------GRQKHRTQAVFNHTEDYVLFP 370 (430)
T ss_pred eEEEcc-CCeEEeecCCcceeeeeeecCCceEEEEecCCcc------------------cchhhhhhhhhcCccceEEcc
Confidence 999998 9999999999999999999996543332211000 000111122233 4455544
Q ss_pred e-cCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEcc
Q 017553 257 S-VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ 321 (369)
Q Consensus 257 ~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~ 321 (369)
. ..+.+.-||.++..+. ..---+|.+.+..+.-||.+. .+++++.|-++++|--+
T Consensus 371 DEas~slcsWdaRtadr~--------~l~slgHn~a~R~i~HSP~~p--~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 371 DEASNSLCSWDARTADRV--------ALLSLGHNGAVRWIVHSPVEP--AFMTCSDDFRARFWYRR 426 (430)
T ss_pred ccccCceeeccccchhhh--------hhcccCCCCCceEEEeCCCCC--ceeeecccceeeeeeec
Confidence 3 3567889999988742 122235788899999999996 89999999999999644
No 120
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=4.9e-29 Score=191.79 Aligned_cols=264 Identities=15% Similarity=0.241 Sum_probs=210.1
Q ss_pred cccccccccccccccccccceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCC
Q 017553 3 RTAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDED 81 (369)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~ 81 (369)
.+|.|+.+....++ +...-.+..+++.|.+.|..|++.. ..++++++|. |+.|.+.. ....++.
T Consensus 81 ~~aSGs~DG~VkiW--nlsqR~~~~~f~AH~G~V~Gi~v~~------~~~~tvgdDKtvK~wk~~~-~p~~til------ 145 (433)
T KOG0268|consen 81 TVASGSCDGEVKIW--NLSQRECIRTFKAHEGLVRGICVTQ------TSFFTVGDDKTVKQWKIDG-PPLHTIL------ 145 (433)
T ss_pred hhhccccCceEEEE--ehhhhhhhheeecccCceeeEEecc------cceEEecCCcceeeeeccC-Ccceeee------
Confidence 35666666664444 4555566778999999999999986 5567777777 99999654 3333333
Q ss_pred cccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCC
Q 017553 82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG 161 (369)
Q Consensus 82 ~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~ 161 (369)
....+..+.-. ..+. .+++++. .|.|||.....+++.+.--.+.|.++.|+|....+|++|+.|+.|.+||++++
T Consensus 146 g~s~~~gIdh~--~~~~-~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~ 220 (433)
T KOG0268|consen 146 GKSVYLGIDHH--RKNS-VFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQA 220 (433)
T ss_pred ccccccccccc--cccc-cccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccC
Confidence 23344444433 3344 7888875 59999999889999998888899999999988889999999999999999999
Q ss_pred cEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCC
Q 017553 162 ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN 241 (369)
Q Consensus 162 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (369)
.++..+. ..-.-+.++|+| ....|++++.|..++.||++.. ..|+....+|.+
T Consensus 221 ~Pl~KVi----~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l----------------------~~p~~v~~dhvs 273 (433)
T KOG0268|consen 221 SPLKKVI----LTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNL----------------------SRPLNVHKDHVS 273 (433)
T ss_pred Cccceee----eeccccceecCc-cccceeeccccccceehhhhhh----------------------cccchhhcccce
Confidence 9988876 555678899999 9999999999999999999983 567888899999
Q ss_pred ceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEE
Q 017553 242 YVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE 319 (369)
Q Consensus 242 ~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d 319 (369)
.|..++|+ |+-+++|+.|.+|+||..+.+.... ... ......|.++.||.|.+ ++++|+.|+.|++|.
T Consensus 274 AV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRd------iYh--tkRMq~V~~Vk~S~Dsk--yi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 274 AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRD------IYH--TKRMQHVFCVKYSMDSK--YIISGSDDGNVRLWK 343 (433)
T ss_pred eEEEeccCCCcchhccccccceEEEeecCCCcchh------hhh--HhhhheeeEEEEecccc--EEEecCCCcceeeee
Confidence 99999998 9999999999999999998775311 111 11125689999999997 999999999999998
Q ss_pred ccCC
Q 017553 320 LQSS 323 (369)
Q Consensus 320 ~~~~ 323 (369)
....
T Consensus 344 a~As 347 (433)
T KOG0268|consen 344 AKAS 347 (433)
T ss_pred cchh
Confidence 7654
No 121
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.7e-26 Score=191.42 Aligned_cols=293 Identities=15% Similarity=0.219 Sum_probs=232.7
Q ss_pred ccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCC
Q 017553 30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING 108 (369)
Q Consensus 30 ~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg 108 (369)
.--..+|.++||+. ..+.||.+-.++ |.||++..+-.....- .......|-.++|+ +.+ .|.+.+.+|
T Consensus 22 d~~Ps~I~slA~s~----kS~~lAvsRt~g~IEiwN~~~~w~~~~vi---~g~~drsIE~L~W~--e~~--RLFS~g~sg 90 (691)
T KOG2048|consen 22 DYKPSEIVSLAYSH----KSNQLAVSRTDGNIEIWNLSNNWFLEPVI---HGPEDRSIESLAWA--EGG--RLFSSGLSG 90 (691)
T ss_pred eeeccceEEEEEec----cCCceeeeccCCcEEEEccCCCceeeEEE---ecCCCCceeeEEEc--cCC--eEEeecCCc
Confidence 34567899999998 356788888888 9999988765433322 11467789999998 666 499999999
Q ss_pred eEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCce
Q 017553 109 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY 188 (369)
Q Consensus 109 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 188 (369)
.|.-||+.+++....+....+.|++++.+| .+..++.|+.||.+..++...++...... +...++.|.++.|+| ++.
T Consensus 91 ~i~EwDl~~lk~~~~~d~~gg~IWsiai~p-~~~~l~IgcddGvl~~~s~~p~~I~~~r~-l~rq~sRvLslsw~~-~~~ 167 (691)
T KOG2048|consen 91 SITEWDLHTLKQKYNIDSNGGAIWSIAINP-ENTILAIGCDDGVLYDFSIGPDKITYKRS-LMRQKSRVLSLSWNP-TGT 167 (691)
T ss_pred eEEEEecccCceeEEecCCCcceeEEEeCC-ccceEEeecCCceEEEEecCCceEEEEee-cccccceEEEEEecC-Ccc
Confidence 999999999999999998999999999999 88999999999988888877665543322 224678999999999 888
Q ss_pred EEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeec-cCCCceeeeeee-CcEEEEeecCCeEEEec
Q 017553 189 RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS-VHSNYVDCNRWL-GDFILSKSVDNEIVLWE 266 (369)
Q Consensus 189 ~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~-~~~l~~~~~d~~i~i~d 266 (369)
.+++|+.||.|++||...+......... +..+. ..+..|.++.|- ...+++|...|.|.+||
T Consensus 168 ~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~----------------~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd 231 (691)
T KOG2048|consen 168 KIAGGSIDGVIRIWDVKSGQTLHIITMQ----------------LDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWD 231 (691)
T ss_pred EEEecccCceEEEEEcCCCceEEEeeec----------------ccccccCCceEEEEEEEeecCcEEEecCCceEEEEc
Confidence 8999999999999999986543321111 11111 133456666664 88999999999999999
Q ss_pred CCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEec
Q 017553 267 PKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMS 346 (369)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s 346 (369)
...+. .++.+..|...|.+++..+++. .+.+++.|+.|..|...+.....+.......|...|.+++..
T Consensus 232 ~~~gT---------LiqS~~~h~adVl~Lav~~~~d--~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~ 300 (691)
T KOG2048|consen 232 SIFGT---------LIQSHSCHDADVLALAVADNED--RVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVI 300 (691)
T ss_pred ccCcc---------hhhhhhhhhcceeEEEEcCCCC--eEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeee
Confidence 99876 7888899999999999999986 899999999999999888755444444455777899999998
Q ss_pred CCCCEEEEeecCCeEEEEe
Q 017553 347 YDGSTILSCCEDGAIWRWD 365 (369)
Q Consensus 347 ~~~~~l~s~~~dg~i~vw~ 365 (369)
++ .|++|+.|..+.+=.
T Consensus 301 ~~--~l~sgG~d~~l~i~~ 317 (691)
T KOG2048|consen 301 EN--ALISGGRDFTLAICS 317 (691)
T ss_pred cc--eEEecceeeEEEEcc
Confidence 87 899999999887643
No 122
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.3e-28 Score=192.80 Aligned_cols=253 Identities=16% Similarity=0.235 Sum_probs=198.6
Q ss_pred EEEEEeec---cCCCccEEEEecCCc-EEEEEecCCceeE----------------EEeeeccCCcccceeEEEeeecCC
Q 017553 37 YAVVFNFI---DSRYFNVFATVGGNR-VTVYQCLEGGVIA----------------ALQSYVDEDKEESFYTVSWACNVD 96 (369)
Q Consensus 37 ~~~~~s~~---~~~~~~~la~~~~~~-v~iw~~~~~~~~~----------------~~~~~~~~~~~~~v~~~~~~~~~~ 96 (369)
.|++|... +..-|+++|.|..+. |.|||+.--..+. ..+.+....|...|..++|. ..
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n--~~ 254 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWN--RN 254 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhc--cc
Confidence 56666432 223478999999999 9999985211110 11222334577788888888 55
Q ss_pred CccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCC-cEEEEeeccCCCCC
Q 017553 97 GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG-ICILIFAGAGGHRN 175 (369)
Q Consensus 97 g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~ 175 (369)
-+++|++|+.|.+|.+||+.++++..++..|.+.|.++.|+|..+..|++|+.|++|.+.|.+.. ..-..++ ..+
T Consensus 255 ~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk----~~g 330 (463)
T KOG0270|consen 255 FRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK----FDG 330 (463)
T ss_pred cceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE----ecc
Confidence 56699999999999999999999999999999999999999989999999999999999999842 2223333 567
Q ss_pred cEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee---CcE
Q 017553 176 EVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDF 252 (369)
Q Consensus 176 ~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~ 252 (369)
.|-.++|.|.....++++..||+|+-+|+|.. ..++.++..|...|.+++++ +.+
T Consensus 331 ~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~----------------------~~~vwt~~AHd~~ISgl~~n~~~p~~ 388 (463)
T KOG0270|consen 331 EVEKVAWDPHSENSFFVSTDDGTVYYFDIRNP----------------------GKPVWTLKAHDDEISGLSVNIQTPGL 388 (463)
T ss_pred ceEEEEecCCCceeEEEecCCceEEeeecCCC----------------------CCceeEEEeccCCcceEEecCCCCcc
Confidence 89999999988899999999999999999983 36889999999999999998 679
Q ss_pred EEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCc
Q 017553 253 ILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP 325 (369)
Q Consensus 253 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~ 325 (369)
+++++.|+.+++|++....... +......-+...|.++.|+-. ..++.|+..+.+++||+.+..+
T Consensus 389 l~t~s~d~~Vklw~~~~~~~~~-------v~~~~~~~~rl~c~~~~~~~a-~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 389 LSTASTDKVVKLWKFDVDSPKS-------VKEHSFKLGRLHCFALDPDVA-FTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred eeeccccceEEEEeecCCCCcc-------cccccccccceeecccCCCcc-eEEEecCccceEEEeecccChh
Confidence 9999999999999998765321 111111123356677777766 4788899999999999988753
No 123
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=5.5e-28 Score=191.84 Aligned_cols=259 Identities=18% Similarity=0.218 Sum_probs=202.3
Q ss_pred ccEEEEecCCc--EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeec
Q 017553 49 FNVFATVGGNR--VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG 126 (369)
Q Consensus 49 ~~~la~~~~~~--v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 126 (369)
+.+++++...+ +.+|.+.+..... +.. .-.++|.+++-+ |+|. +|+.|+..|.|++|.+.+|.++..+.+
T Consensus 50 ~~yllsaq~~rp~l~vw~i~k~~~~~--q~~---v~Pg~v~al~s~--n~G~-~l~ag~i~g~lYlWelssG~LL~v~~a 121 (476)
T KOG0646|consen 50 NEYLLSAQLKRPLLHVWEILKKDQVV--QYI---VLPGPVHALASS--NLGY-FLLAGTISGNLYLWELSSGILLNVLSA 121 (476)
T ss_pred hhheeeecccCccccccccCchhhhh--hhc---ccccceeeeecC--CCce-EEEeecccCcEEEEEeccccHHHHHHh
Confidence 36777777666 9999987655544 111 345678888877 8898 888888999999999999999999999
Q ss_pred cccceEEEEecCCCCceEEEEeCCCcEEEEEcc---------CCcEEEEeeccCCCCCcEEEEEecCC-CceEEEEEeeC
Q 017553 127 HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ---------TGICILIFAGAGGHRNEVLSVDFHPS-DIYRIASCGMD 196 (369)
Q Consensus 127 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~---------~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~d 196 (369)
|-..|+|+.|+. |+.+|++||.||.|.+|++. +-++++.+. .|.-+|+++...+. ....+++++.|
T Consensus 122 HYQ~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~---~HtlsITDl~ig~Gg~~~rl~TaS~D 197 (476)
T KOG0646|consen 122 HYQSITCLKFSD-DGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFS---DHTLSITDLQIGSGGTNARLYTASED 197 (476)
T ss_pred hccceeEEEEeC-CCcEEEecCCCccEEEEEEEeecccccCCCccceeeec---cCcceeEEEEecCCCccceEEEecCC
Confidence 999999999999 99999999999999999874 234556666 79999999998762 24679999999
Q ss_pred CcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCC-
Q 017553 197 NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQS- 273 (369)
Q Consensus 197 ~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~- 273 (369)
.++++||+..+.... -...+..+.++..+ +..++.|+.+|.|.+.++......
T Consensus 198 ~t~k~wdlS~g~LLl------------------------ti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~ 253 (476)
T KOG0646|consen 198 RTIKLWDLSLGVLLL------------------------TITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQS 253 (476)
T ss_pred ceEEEEEeccceeeE------------------------EEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCccc
Confidence 999999999853222 22345677888887 779999999999999887654411
Q ss_pred ------CCCCccceeeeccCCCC--CeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEe
Q 017553 274 ------PGEGTADILQKYPVPEC--DIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAM 345 (369)
Q Consensus 274 ------~~~~~~~~~~~~~~~~~--~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~ 345 (369)
........+..+.+|.. .|++++++.|+. +|++|+.||.|+|||+.+.+ .++.+. ...++|+.+.+
T Consensus 254 ~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt--lLlSGd~dg~VcvWdi~S~Q--~iRtl~--~~kgpVtnL~i 327 (476)
T KOG0646|consen 254 AGVNQKGRHEENTQINVLVGHENESAITCLAISTDGT--LLLSGDEDGKVCVWDIYSKQ--CIRTLQ--TSKGPVTNLQI 327 (476)
T ss_pred ccccccccccccceeeeeccccCCcceeEEEEecCcc--EEEeeCCCCCEEEEecchHH--HHHHHh--hhccccceeEe
Confidence 11123334566677776 999999999996 99999999999999999874 445554 24478888888
Q ss_pred cCCC
Q 017553 346 SYDG 349 (369)
Q Consensus 346 s~~~ 349 (369)
.|-.
T Consensus 328 ~~~~ 331 (476)
T KOG0646|consen 328 NPLE 331 (476)
T ss_pred eccc
Confidence 6643
No 124
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=1e-27 Score=208.95 Aligned_cols=255 Identities=15% Similarity=0.165 Sum_probs=202.6
Q ss_pred eeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCC-------c--------eeEEEeeeccCCcccceeE
Q 017553 25 VTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEG-------G--------VIAALQSYVDEDKEESFYT 88 (369)
Q Consensus 25 ~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~-------~--------~~~~~~~~~~~~~~~~v~~ 88 (369)
.+.+...|.+.|+|+.|+| ||.+||+|++|+ |.||..... . ..+....+ ..|...|..
T Consensus 61 ~l~~m~~h~~sv~CVR~S~----dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l--~~H~~DV~D 134 (942)
T KOG0973|consen 61 HLCTMDDHDGSVNCVRFSP----DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSIL--RGHDSDVLD 134 (942)
T ss_pred hheeeccccCceeEEEECC----CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEE--ecCCCccce
Confidence 3445578999999999999 799999999999 999997630 0 11111111 258999999
Q ss_pred EEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEee
Q 017553 89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFA 168 (369)
Q Consensus 89 ~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 168 (369)
++|+ |++. +|++++.|++|.+||..+.+.+..+++|.+.|..+.|.| -+++|++-+.|++|++|+..+-...+.+.
T Consensus 135 v~Ws--p~~~-~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It 210 (942)
T KOG0973|consen 135 VNWS--PDDS-LLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSIT 210 (942)
T ss_pred eccC--CCcc-EEEEecccceEEEEccccceeeeeeecccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEeec
Confidence 9999 8998 999999999999999999999999999999999999999 89999999999999999987766666655
Q ss_pred ccCC---CCCcEEEEEecCCCceEEEEEee----CCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCC
Q 017553 169 GAGG---HRNEVLSVDFHPSDIYRIASCGM----DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN 241 (369)
Q Consensus 169 ~~~~---~~~~v~~~~~~~~~~~~l~~~~~----d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (369)
.+.. -...+..+.|+| +|.+|++... -.++.|.+-.+ -..-..+-+|..
T Consensus 211 ~pf~~~~~~T~f~RlSWSP-DG~~las~nA~n~~~~~~~IieR~t-----------------------Wk~~~~LvGH~~ 266 (942)
T KOG0973|consen 211 KPFEESPLTTFFLRLSWSP-DGHHLASPNAVNGGKSTIAIIERGT-----------------------WKVDKDLVGHSA 266 (942)
T ss_pred cchhhCCCcceeeecccCC-CcCeecchhhccCCcceeEEEecCC-----------------------ceeeeeeecCCC
Confidence 3222 233577899999 9999988743 23566666544 223456778999
Q ss_pred ceeeeeee-------Cc------------EEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCC
Q 017553 242 YVDCNRWL-------GD------------FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFH 302 (369)
Q Consensus 242 ~v~~~~~~-------~~------------~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 302 (369)
++.++.|+ .+ .+++|+.|+.|.||.....++ .+.........|..++|+|||-
T Consensus 267 p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RP--------l~vi~~lf~~SI~DmsWspdG~ 338 (942)
T KOG0973|consen 267 PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRP--------LFVIHNLFNKSIVDMSWSPDGF 338 (942)
T ss_pred ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCc--------hhhhhhhhcCceeeeeEcCCCC
Confidence 99999995 11 678999999999999976653 3333344567899999999995
Q ss_pred ccEEEEecCCCeEEEEEccCC
Q 017553 303 YNAAAIGNREGKIFVWELQSS 323 (369)
Q Consensus 303 ~~~l~~~~~dg~i~i~d~~~~ 323 (369)
.|++++.||+|.++.++..
T Consensus 339 --~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 339 --SLFACSLDGTVALIHFEEK 357 (942)
T ss_pred --eEEEEecCCeEEEEEcchH
Confidence 7888999999999998753
No 125
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=8.4e-28 Score=199.67 Aligned_cols=251 Identities=19% Similarity=0.354 Sum_probs=210.7
Q ss_pred cccccccccccceeeeeecccCCcCeEE-EEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeE
Q 017553 11 LVGSLTPSKKREYRVTNKLQEGKRPLYA-VVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYT 88 (369)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~ 88 (369)
...+++......|...+.+.+|.+-|.+ ++|-+. ++..+.+|+.|. +.+|......+...+. .|+..|.+
T Consensus 35 ~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~---~~~~l~~g~~D~~i~v~~~~~~~P~~~Lk-----gH~snVC~ 106 (745)
T KOG0301|consen 35 GTVKVWAKKGKQYLETHAFEGPKGFIANSICYAES---DKGRLVVGGMDTTIIVFKLSQAEPLYTLK-----GHKSNVCS 106 (745)
T ss_pred CceeeeeccCcccccceecccCcceeeccceeccc---cCcceEeecccceEEEEecCCCCchhhhh-----ccccceee
Confidence 3333444334555555667888888888 888773 467799999999 9999999999998888 58888888
Q ss_pred EEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEee
Q 017553 89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFA 168 (369)
Q Consensus 89 ~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 168 (369)
++.. .++. +++|+.|.++++|.. +++...+.+|+..|++++..| ++ .++||+.|.+|++|.- ++.++++.
T Consensus 107 ls~~--~~~~--~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~-e~-~~vTgsaDKtIklWk~--~~~l~tf~ 176 (745)
T KOG0301|consen 107 LSIG--EDGT--LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLP-EN-TYVTGSADKTIKLWKG--GTLLKTFS 176 (745)
T ss_pred eecC--CcCc--eEecccccceEEecc--hhhhcccCCcchheeeeeecC-CC-cEEeccCcceeeeccC--Cchhhhhc
Confidence 8765 5664 999999999999974 677778999999999999999 54 8999999999999985 77888888
Q ss_pred ccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeee
Q 017553 169 GAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW 248 (369)
Q Consensus 169 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 248 (369)
+|.+.|..+++.+ ...|++++.||.|+.|++.. ..+....+|++.+.++..
T Consensus 177 ---gHtD~VRgL~vl~--~~~flScsNDg~Ir~w~~~g------------------------e~l~~~~ghtn~vYsis~ 227 (745)
T KOG0301|consen 177 ---GHTDCVRGLAVLD--DSHFLSCSNDGSIRLWDLDG------------------------EVLLEMHGHTNFVYSISM 227 (745)
T ss_pred ---cchhheeeeEEec--CCCeEeecCCceEEEEeccC------------------------ceeeeeeccceEEEEEEe
Confidence 8999999999996 44599999999999999954 457788899999999995
Q ss_pred e--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccC
Q 017553 249 L--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS 322 (369)
Q Consensus 249 ~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~ 322 (369)
. ++.+++++.|++++||+... +.+.+..+...++++.+-++|+ +++|+.||.||||....
T Consensus 228 ~~~~~~Ivs~gEDrtlriW~~~e-----------~~q~I~lPttsiWsa~~L~NgD---Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 228 ALSDGLIVSTGEDRTLRIWKKDE-----------CVQVITLPTTSIWSAKVLLNGD---IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred cCCCCeEEEecCCceEEEeecCc-----------eEEEEecCccceEEEEEeeCCC---EEEeccCceEEEEEecc
Confidence 3 78999999999999999762 6777777778899999999995 89999999999998763
No 126
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.96 E-value=3.5e-27 Score=186.90 Aligned_cols=311 Identities=13% Similarity=0.178 Sum_probs=219.6
Q ss_pred cceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCce-eEEEeeeccCCcccceeEEEeeecCCCc
Q 017553 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGV-IAALQSYVDEDKEESFYTVSWACNVDGI 98 (369)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~g~ 98 (369)
..+.....++-+.++|++++|+|.. ..+++|+|...+ |-+||+.+.+. ...+.- ...|..+|.++.|+ |.+.
T Consensus 174 ~~~~~~~v~kv~~~Rit~l~fHPt~--~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~--f~~hs~~Vs~l~F~--P~n~ 247 (498)
T KOG4328|consen 174 DDYRILNVAKVTDRRITSLAFHPTE--NRKLVAVGDKGGQVGLWNFGTQEKDKDGVYL--FTPHSGPVSGLKFS--PANT 247 (498)
T ss_pred ccceecceeEecccceEEEEecccC--cceEEEEccCCCcEEEEecCCCCCccCceEE--eccCCccccceEec--CCCh
Confidence 3444555667789999999999964 347888888888 99999853222 111111 22688999999998 6555
Q ss_pred cEEEEeecCCeEEEEEcCCccc--cceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcE-EEEeeccCCCCC
Q 017553 99 PFLVAGGINGIIRVIDVSNEKL--HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC-ILIFAGAGGHRN 175 (369)
Q Consensus 99 ~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~ 175 (369)
..+++.+.||+|++-|++.... +..+......+..+.|+. +...++.+..=|...+||.+++.. ...+. -|..
T Consensus 248 s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~---lh~k 323 (498)
T KOG4328|consen 248 SQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENLR---LHKK 323 (498)
T ss_pred hheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccC-CCccEEEeecccceEEEEeecCCccchhhh---hhhc
Confidence 5799999999999999987643 444433556778889988 566666676667999999998765 44444 5888
Q ss_pred cEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEE
Q 017553 176 EVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFI 253 (369)
Q Consensus 176 ~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l 253 (369)
.|..++++|....+|++++.|++++|||+|..... ..|......|...|.+..|+ +..|
T Consensus 324 KI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K-------------------~sp~lst~~HrrsV~sAyFSPs~gtl 384 (498)
T KOG4328|consen 324 KITSVALNPVCPWFLATASLDQTAKIWDLRQLRGK-------------------ASPFLSTLPHRRSVNSAYFSPSGGTL 384 (498)
T ss_pred ccceeecCCCCchheeecccCcceeeeehhhhcCC-------------------CCcceecccccceeeeeEEcCCCCce
Confidence 99999999999999999999999999999983210 11456667899999999998 4469
Q ss_pred EEeecCCeEEEecCCCCCCCCCCCccceeeeccCCC--CCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEe
Q 017553 254 LSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPE--CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARL 331 (369)
Q Consensus 254 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 331 (369)
++.+.|..|+|||..-... ...+...+..-..+. -.....+|.|+.. ++++|..-..|-|||-..+ +.+..+
T Consensus 385 ~TT~~D~~IRv~dss~~sa--~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~--li~vg~~~r~IDv~~~~~~--q~v~el 458 (498)
T KOG4328|consen 385 LTTCQDNEIRVFDSSCISA--KDEPLGTIPHNNRTGRWLTPFKAAWDPDYN--LIVVGRYPRPIDVFDGNGG--QMVCEL 458 (498)
T ss_pred EeeccCCceEEeecccccc--cCCccceeeccCcccccccchhheeCCCcc--EEEEeccCcceeEEcCCCC--EEeeec
Confidence 9999999999999851100 000111111111111 1234467999774 9999999999999998887 344444
Q ss_pred ecCCCccceEEEEecCCCC-EEEEeecCCeEEEEec
Q 017553 332 SHAQSKSPIRQTAMSYDGS-TILSCCEDGAIWRWDA 366 (369)
Q Consensus 332 ~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~vw~~ 366 (369)
..+....-..-..|+|-+. +++-++..|.|+||--
T Consensus 459 ~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 459 HDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred cCccccccccceeecccccceeccCCccceEEEEec
Confidence 3222212223467999887 5555557888999854
No 127
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.96 E-value=5.9e-26 Score=187.89 Aligned_cols=265 Identities=12% Similarity=0.111 Sum_probs=185.7
Q ss_pred cEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccc
Q 017553 50 NVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHG 128 (369)
Q Consensus 50 ~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 128 (369)
.++++++.++ +++||+.+++.+..+.. + ..+..++|+ |+|+.++++++.++.|++||..+++....+..+.
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~-----~-~~~~~l~~~--~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~ 73 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPV-----G-QRPRGITLS--KDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP 73 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEEC-----C-CCCCceEEC--CCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC
Confidence 5788888888 99999988887776652 2 234567776 8998334677788999999999888777666544
Q ss_pred cceEEEEecCCCCceE-EEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCC-cEEEEEccC
Q 017553 129 DSINEIRTQPLKPSLV-VSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN-TVKIWSMKE 206 (369)
Q Consensus 129 ~~v~~~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-~v~i~d~~~ 206 (369)
. +..++|+| +++.+ ++++.++.|++||+++++.+..+. +...+.+++|+| ++.+++++..++ .+.+||.++
T Consensus 74 ~-~~~~~~~~-~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~----~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~ 146 (300)
T TIGR03866 74 D-PELFALHP-NGKILYIANEDDNLVTVIDIETRKVLAEIP----VGVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKT 146 (300)
T ss_pred C-ccEEEECC-CCCEEEEEcCCCCeEEEEECCCCeEEeEee----CCCCcceEEECC-CCCEEEEEecCCCeEEEEeCCC
Confidence 3 56789999 66655 455678999999999888777765 344568899999 888888887765 467788876
Q ss_pred ceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEE-EeecCCeEEEecCCCCCCCCCCCccceee
Q 017553 207 FWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFIL-SKSVDNEIVLWEPKMKEQSPGEGTADILQ 283 (369)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 283 (369)
+... .... ......++.|+ +++++ ++..++.|++||+.+.+. +.
T Consensus 147 ~~~~-----------------------~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~---------~~ 193 (300)
T TIGR03866 147 YEIV-----------------------DNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKV---------IK 193 (300)
T ss_pred CeEE-----------------------EEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCccee---------ee
Confidence 3211 1111 11223456665 66664 445699999999998752 22
Q ss_pred eccC-------CCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEe-
Q 017553 284 KYPV-------PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSC- 355 (369)
Q Consensus 284 ~~~~-------~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~- 355 (369)
.+.. .......++|+|+++. .+++...++.+.+||+.+++. ...+.. ...+.+++|+|+|++|+++
T Consensus 194 ~~~~~~~~~~~~~~~~~~i~~s~dg~~-~~~~~~~~~~i~v~d~~~~~~--~~~~~~---~~~~~~~~~~~~g~~l~~~~ 267 (300)
T TIGR03866 194 KITFEIPGVHPEAVQPVGIKLTKDGKT-AFVALGPANRVAVVDAKTYEV--LDYLLV---GQRVWQLAFTPDEKYLLTTN 267 (300)
T ss_pred eeeecccccccccCCccceEECCCCCE-EEEEcCCCCeEEEEECCCCcE--EEEEEe---CCCcceEEECCCCCEEEEEc
Confidence 2111 1112346889999972 234445567899999988743 333321 2468899999999999876
Q ss_pred ecCCeEEEEecCC
Q 017553 356 CEDGAIWRWDAIP 368 (369)
Q Consensus 356 ~~dg~i~vw~~~~ 368 (369)
+.+|.|++||+.+
T Consensus 268 ~~~~~i~v~d~~~ 280 (300)
T TIGR03866 268 GVSNDVSVIDVAA 280 (300)
T ss_pred CCCCeEEEEECCC
Confidence 4689999999875
No 128
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=3.5e-27 Score=178.54 Aligned_cols=298 Identities=15% Similarity=0.163 Sum_probs=216.1
Q ss_pred eeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEE
Q 017553 24 RVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLV 102 (369)
Q Consensus 24 ~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~ 102 (369)
++..+|.... -.|+.|++ .|.+||+|..|+ |.|||+.+-..-+.+. .|..+|.+++|+ ++|+ .|+
T Consensus 16 el~~tld~~~--a~~~~Fs~----~G~~lAvGc~nG~vvI~D~~T~~iar~ls-----aH~~pi~sl~WS--~dgr-~Ll 81 (405)
T KOG1273|consen 16 ELTHTLDNPL--AECCQFSR----WGDYLAVGCANGRVVIYDFDTFRIARMLS-----AHVRPITSLCWS--RDGR-KLL 81 (405)
T ss_pred hhceeccCCc--cceEEecc----CcceeeeeccCCcEEEEEccccchhhhhh-----ccccceeEEEec--CCCC-Eee
Confidence 3445554222 78999999 799999999999 9999999988766666 588899999999 9999 999
Q ss_pred EeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCC-CCCcEEEEE
Q 017553 103 AGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGG-HRNEVLSVD 181 (369)
Q Consensus 103 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~~v~~~~ 181 (369)
+++.|..|.+||+..|.+++.++ ...+|+...|+|.+.+.+++.-.+..-.+-++..+.....-....+ -.....+..
T Consensus 82 tsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~ 160 (405)
T KOG1273|consen 82 TSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGV 160 (405)
T ss_pred eecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccccccccccc
Confidence 99999999999999999998887 6789999999997777777776666677777765332211110001 111123345
Q ss_pred ecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCC-Cceeeeeee--CcEEEEeec
Q 017553 182 FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS-NYVDCNRWL--GDFILSKSV 258 (369)
Q Consensus 182 ~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~--~~~l~~~~~ 258 (369)
|.+ .|+++++|...|.+.++|..+.+ .+..+.... ..|..+.+. |+.++.-+.
T Consensus 161 fdr-~g~yIitGtsKGkllv~~a~t~e-----------------------~vas~rits~~~IK~I~~s~~g~~liiNts 216 (405)
T KOG1273|consen 161 FDR-RGKYIITGTSKGKLLVYDAETLE-----------------------CVASFRITSVQAIKQIIVSRKGRFLIINTS 216 (405)
T ss_pred ccC-CCCEEEEecCcceEEEEecchhe-----------------------eeeeeeechheeeeEEEEeccCcEEEEecC
Confidence 777 89999999999999999999832 222222222 556666665 899999999
Q ss_pred CCeEEEecCCCCCCCCCCCccceeeeccC--CCCCeeEEEEeecCCccEEEEe-cCCCeEEEEEccCCCceeEEEeecCC
Q 017553 259 DNEIVLWEPKMKEQSPGEGTADILQKYPV--PECDIWFIKFSCDFHYNAAAIG-NREGKIFVWELQSSPPVLIARLSHAQ 335 (369)
Q Consensus 259 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~s~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~ 335 (369)
|+.||.|+++.-......+..++.++++. ....-.+++||.+|. +++.+ .....++||....|. +++.+. +
T Consensus 217 DRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dge--Yv~a~s~~aHaLYIWE~~~Gs--LVKILh--G 290 (405)
T KOG1273|consen 217 DRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGE--YVCAGSARAHALYIWEKSIGS--LVKILH--G 290 (405)
T ss_pred CceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCcc--EEEeccccceeEEEEecCCcc--eeeeec--C
Confidence 99999999874432211112222222221 223456789999997 55444 456779999999884 555555 4
Q ss_pred Cc-cceEEEEecCCCCEEEEeecCCeEEEEecC
Q 017553 336 SK-SPIRQTAMSYDGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 336 ~~-~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 367 (369)
.. .....+.|+|-...+++- ..|.|+||...
T Consensus 291 ~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 291 TKGEELLDVNWHPVRPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred Cchhheeecccccceeeeeec-cCCceEEEEee
Confidence 44 567889999998888877 78899999864
No 129
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=8.2e-28 Score=193.30 Aligned_cols=257 Identities=17% Similarity=0.251 Sum_probs=188.4
Q ss_pred CcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCcc----ccceee-ccccceEEEEecCCCCceEEEEeCCCcEEE
Q 017553 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK----LHKSFV-GHGDSINEIRTQPLKPSLVVSASKDESVRL 155 (369)
Q Consensus 81 ~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~----~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~v 155 (369)
.+...|.++++. |.|. .+++|+.|.+|++||+.... ..+.+. .....|.++.|++ .+..|++.+.....+|
T Consensus 165 hgtk~Vsal~~D--p~Ga-R~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~-Tg~~iLvvsg~aqakl 240 (641)
T KOG0772|consen 165 HGTKIVSALAVD--PSGA-RFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSV-TGDQILVVSGSAQAKL 240 (641)
T ss_pred CCceEEEEeeec--CCCc-eeeeccccceEEEEecccccccchhhhccCcccccccceeeecC-CCCeEEEEecCcceeE
Confidence 567788888887 8999 99999999999999986432 122222 2345899999999 7777777777889999
Q ss_pred EEccCCcEEEEee---------ccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCC
Q 017553 156 WNVQTGICILIFA---------GAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPT 226 (369)
Q Consensus 156 wd~~~~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~ 226 (369)
+|-...+.....+ .-.+|...++|.+|+|.+...|++++.||++++||+...+...+.-
T Consensus 241 ~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVi------------ 308 (641)
T KOG0772|consen 241 LDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVI------------ 308 (641)
T ss_pred EccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEE------------
Confidence 9965443333322 2238999999999999888999999999999999999843221110
Q ss_pred ceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCC--CCeeEEEEeecCC
Q 017553 227 KYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPE--CDIWFIKFSCDFH 302 (369)
Q Consensus 227 ~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~s~~~~ 302 (369)
......+..-.++.++|+ +++|++|+.||.|.+|+.......+ .+..-..|. ..|+++.||++|+
T Consensus 309 -----k~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p------~~~vk~AH~~g~~Itsi~FS~dg~ 377 (641)
T KOG0772|consen 309 -----KTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRP------VMKVKDAHLPGQDITSISFSYDGN 377 (641)
T ss_pred -----eeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCccccc------ceEeeeccCCCCceeEEEeccccc
Confidence 011122344567888887 8899999999999999986554211 222333444 4899999999996
Q ss_pred ccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEee------cCCeEEEEecC
Q 017553 303 YNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCC------EDGAIWRWDAI 367 (369)
Q Consensus 303 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~------~dg~i~vw~~~ 367 (369)
+|++-+.|+++++||++..+ +.+.....-....+-+.++|||+.++|++|. ..|.+++||-.
T Consensus 378 --~LlSRg~D~tLKvWDLrq~k-kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~ 445 (641)
T KOG0772|consen 378 --YLLSRGFDDTLKVWDLRQFK-KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRM 445 (641)
T ss_pred --hhhhccCCCceeeeeccccc-cchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecc
Confidence 99999999999999999865 2333333112334567899999999999986 35668888753
No 130
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.9e-27 Score=185.96 Aligned_cols=232 Identities=16% Similarity=0.223 Sum_probs=186.3
Q ss_pred EEEEeecCCeEEEEEcCCccc---c------------------ceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEc
Q 017553 100 FLVAGGINGIIRVIDVSNEKL---H------------------KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 158 (369)
Q Consensus 100 ~l~~~~~dg~i~vwd~~~~~~---~------------------~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~ 158 (369)
++|.|+.|..|.|||+.-... . ..-.+|+..|.+++|+..-.++|++||.|.+|++||+
T Consensus 194 yvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~ 273 (463)
T KOG0270|consen 194 YVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDV 273 (463)
T ss_pred eEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEc
Confidence 999999999999999852110 0 1123699999999999877889999999999999999
Q ss_pred cCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeecc
Q 017553 159 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV 238 (369)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (369)
.++++...+. .|.+.|.++.|+|..+..|++|+.|++|.+.|.|.... ....-.
T Consensus 274 ~~g~p~~s~~---~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~-----------------------s~~~wk 327 (463)
T KOG0270|consen 274 DTGKPKSSIT---HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN-----------------------SGKEWK 327 (463)
T ss_pred CCCCcceehh---hcCCceeEEEecCCCceEEEeccccceEEeeeccCccc-----------------------cCceEE
Confidence 9999999998 69999999999998999999999999999999996210 000011
Q ss_pred CCCceeeeeee---CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeE
Q 017553 239 HSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKI 315 (369)
Q Consensus 239 ~~~~v~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i 315 (369)
-.+.|-.+.|+ ...++++..||+++-+|+|.... ++..++.|...|.++++++..+ .++++++.|+.|
T Consensus 328 ~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~--------~vwt~~AHd~~ISgl~~n~~~p-~~l~t~s~d~~V 398 (463)
T KOG0270|consen 328 FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGK--------PVWTLKAHDDEISGLSVNIQTP-GLLSTASTDKVV 398 (463)
T ss_pred eccceEEEEecCCCceeEEEecCCceEEeeecCCCCC--------ceeEEEeccCCcceEEecCCCC-cceeeccccceE
Confidence 24556677775 66889999999999999998753 7889999999999999999877 589999999999
Q ss_pred EEEEccCCCceeEEEeecCCCccceEEEEecCCCC-EEEEeecCCeEEEEecCC
Q 017553 316 FVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGS-TILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 316 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~vw~~~~ 368 (369)
.+|++....+..+.... -.-+...|+++.|+-. .||.|+..+.++|||+.+
T Consensus 399 klw~~~~~~~~~v~~~~--~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~ 450 (463)
T KOG0270|consen 399 KLWKFDVDSPKSVKEHS--FKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFT 450 (463)
T ss_pred EEEeecCCCCccccccc--ccccceeecccCCCcceEEEecCccceEEEeeccc
Confidence 99999877654443322 2223466777777754 677888888899999864
No 131
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=1.3e-27 Score=199.51 Aligned_cols=303 Identities=15% Similarity=0.185 Sum_probs=224.2
Q ss_pred cccCCcCeEEEEEeeccCCC-------ccEEEEecCCc-EEEEEecCCceeEEEeeec----------------------
Q 017553 29 LQEGKRPLYAVVFNFIDSRY-------FNVFATVGGNR-VTVYQCLEGGVIAALQSYV---------------------- 78 (369)
Q Consensus 29 ~~~h~~~v~~~~~s~~~~~~-------~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~---------------------- 78 (369)
+--|...|+.|.--|.+-++ ...|.+|+.|+ |++|++..+.....+..-.
T Consensus 365 ~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~ 444 (1080)
T KOG1408|consen 365 MLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDAS 444 (1080)
T ss_pred eeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhcc
Confidence 34688888888876622100 24588888888 9999987532211110000
Q ss_pred ----------cCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCC--CCceEEE
Q 017553 79 ----------DEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPL--KPSLVVS 146 (369)
Q Consensus 79 ----------~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~s 146 (369)
.-...-.+.+++.+ |+|+ +|++|..-|+++||++.+.+....+..|...|.|+.|+.. ..++|++
T Consensus 445 ~~~fdka~~s~~d~r~G~R~~~vS--p~gq-hLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLAS 521 (1080)
T KOG1408|consen 445 AGIFDKALVSTCDSRFGFRALAVS--PDGQ-HLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLAS 521 (1080)
T ss_pred CCcccccchhhcCcccceEEEEEC--CCcc-eecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhh
Confidence 00224567888888 9999 9999999999999999999999999999999999999852 3468999
Q ss_pred EeCCCcEEEEEccCC-cEEEEeeccCCCCCcEEEEEecCCCc--eEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCC
Q 017553 147 ASKDESVRLWNVQTG-ICILIFAGAGGHRNEVLSVDFHPSDI--YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSK 223 (369)
Q Consensus 147 ~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~ 223 (369)
++.|.-|.|+|+... .+++++. +|...|+++.|.. ++ ..+++++.|+.|.+--.+....
T Consensus 522 asrdRlIHV~Dv~rny~l~qtld---~HSssITsvKFa~-~gln~~MiscGADksimFr~~qk~~~-------------- 583 (1080)
T KOG1408|consen 522 ASRDRLIHVYDVKRNYDLVQTLD---GHSSSITSVKFAC-NGLNRKMISCGADKSIMFRVNQKASS-------------- 583 (1080)
T ss_pred ccCCceEEEEecccccchhhhhc---ccccceeEEEEee-cCCceEEEeccCchhhheehhccccC--------------
Confidence 999999999998644 4556666 8999999999986 44 6789999998876533332000
Q ss_pred CCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecC
Q 017553 224 FPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDF 301 (369)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 301 (369)
....+..........+..++.+ .+++++++.|..|+|||+.++++.. ....-..+++....+...|.+
T Consensus 584 ----g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k------~FKgs~~~eG~lIKv~lDPSg 653 (1080)
T KOG1408|consen 584 ----GRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVK------SFKGSRDHEGDLIKVILDPSG 653 (1080)
T ss_pred ----ceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceee------eecccccCCCceEEEEECCCc
Confidence 0011111111223345556655 6799999999999999999998311 222233455667777778877
Q ss_pred CccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 302 HYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 302 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
.|+++.+.|.++.++|..+++ .+..+. +|...|+.+.|.+|-+.|++.+.||.|.||.+..
T Consensus 654 --iY~atScsdktl~~~Df~sgE--cvA~m~--GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 654 --IYLATSCSDKTLCFVDFVSGE--CVAQMT--GHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred --cEEEEeecCCceEEEEeccch--hhhhhc--CcchheeeeeecccchhheeecCCceEEEEECch
Confidence 499999999999999999994 566666 9999999999999999999999999999999853
No 132
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=6.2e-26 Score=192.43 Aligned_cols=312 Identities=14% Similarity=0.191 Sum_probs=227.6
Q ss_pred CcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEE
Q 017553 33 KRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIR 111 (369)
Q Consensus 33 ~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~ 111 (369)
.+.|+++. +|.- +-+.++.|+.++ +.|||+.+++.+.+++. +...|+++.=+ |-=. .++.|..+|+|.
T Consensus 159 ~~~Ital~-HP~T--YLNKIvvGs~~G~lql~Nvrt~K~v~~f~~-----~~s~IT~ieqs--PaLD-VVaiG~~~G~Vi 227 (910)
T KOG1539|consen 159 GDFITALL-HPST--YLNKIVVGSSQGRLQLWNVRTGKVVYTFQE-----FFSRITAIEQS--PALD-VVAIGLENGTVI 227 (910)
T ss_pred CCceeeEe-cchh--heeeEEEeecCCcEEEEEeccCcEEEEecc-----cccceeEeccC--Ccce-EEEEeccCceEE
Confidence 33488885 5621 456788888777 99999999999999985 55778877666 5545 899999999999
Q ss_pred EEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEE
Q 017553 112 VIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIA 191 (369)
Q Consensus 112 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 191 (369)
+++++.++.+.+|+...+.|+.++|..++..++++|+..|.+.+||++..+.+..+.. .|.+.|....|.| +...++
T Consensus 228 ifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~n--ah~~sv~~~~fl~-~epVl~ 304 (910)
T KOG1539|consen 228 IFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRN--AHYGSVTGATFLP-GEPVLV 304 (910)
T ss_pred EEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeec--cccCCcccceecC-CCceEe
Confidence 9999999999999944599999999986667888888889999999998888777765 6889999999999 889999
Q ss_pred EEeeCCcEEEEEccCceeeeeee--------------ee---------c-cC------------------C---------
Q 017553 192 SCGMDNTVKIWSMKEFWTYVEKS--------------FT---------W-TD------------------L--------- 220 (369)
Q Consensus 192 ~~~~d~~v~i~d~~~~~~~~~~~--------------~~---------~-~~------------------~--------- 220 (369)
+++.|..+++|=.+++....+.. +. . .+ .
T Consensus 305 ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk 384 (910)
T KOG1539|consen 305 TAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKK 384 (910)
T ss_pred eccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccccc
Confidence 99999998888665322100000 00 0 00 0
Q ss_pred CCCCCCce-eeccee--------------------------e-----------eccC------CCceeeeeee--CcEEE
Q 017553 221 PSKFPTKY-VQFPVF--------------------------I-----------ASVH------SNYVDCNRWL--GDFIL 254 (369)
Q Consensus 221 ~~~~~~~~-~~~~~~--------------------------~-----------~~~~------~~~v~~~~~~--~~~l~ 254 (369)
........ ...++. + ...+ ...+++++.+ |++.+
T Consensus 385 ~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~ 464 (910)
T KOG1539|consen 385 VNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVF 464 (910)
T ss_pred ccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEE
Confidence 00000000 000000 0 0001 1344555544 99999
Q ss_pred EeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCce--------
Q 017553 255 SKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPV-------- 326 (369)
Q Consensus 255 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------- 326 (369)
.|...|.|-+|++.++-... ....-+.|..+|+.++...-++ .+++++.+|.+.+||.......
T Consensus 465 IG~S~G~Id~fNmQSGi~r~------sf~~~~ah~~~V~gla~D~~n~--~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~ 536 (910)
T KOG1539|consen 465 IGYSKGTIDRFNMQSGIHRK------SFGDSPAHKGEVTGLAVDGTNR--LLVSAGADGILKFWDFKKKVLKKSLRLGSS 536 (910)
T ss_pred EeccCCeEEEEEcccCeeec------ccccCccccCceeEEEecCCCc--eEEEccCcceEEEEecCCcceeeeeccCCC
Confidence 99999999999999886211 1112257888999988876664 8999999999999998765311
Q ss_pred -------------------------------eEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 327 -------------------------------LIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 327 -------------------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
.+..+ .+|.+.|++++|||||++|++++.|++|++||+.+
T Consensus 537 ~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f--~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt 607 (910)
T KOG1539|consen 537 ITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREF--WGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPT 607 (910)
T ss_pred cceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHh--hccccceeeeEeCCCCcEEEEeecCCcEEEEeccC
Confidence 01111 26889999999999999999999999999999875
No 133
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=1.1e-26 Score=194.02 Aligned_cols=293 Identities=13% Similarity=0.157 Sum_probs=215.7
Q ss_pred CcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccC-----------------CcccceeEEEeeec
Q 017553 33 KRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDE-----------------DKEESFYTVSWACN 94 (369)
Q Consensus 33 ~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~-----------------~~~~~v~~~~~~~~ 94 (369)
+..-+||+.+. +++++|+.++ |++|+..+.....+++....- ....---+++..|+
T Consensus 260 TTnAnCIcVs~------r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fd 333 (1080)
T KOG1408|consen 260 TTNANCICVSS------RLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFD 333 (1080)
T ss_pred ccccceeeeec------ceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEec
Confidence 44467788775 7888888888 999998876655544321100 00111124677777
Q ss_pred CCCccEEEEeecCCeEEEEEcCCcccc---ceeeccccceEEEEecCC----------CCceEEEEeCCCcEEEEEccCC
Q 017553 95 VDGIPFLVAGGINGIIRVIDVSNEKLH---KSFVGHGDSINEIRTQPL----------KPSLVVSASKDESVRLWNVQTG 161 (369)
Q Consensus 95 ~~g~~~l~~~~~dg~i~vwd~~~~~~~---~~~~~~~~~v~~~~~~~~----------~~~~l~s~~~dg~i~vwd~~~~ 161 (369)
+... .|.+...|..++|||+++-+.+ ..+-.|...|+.+.-.|. -...+++++.|++||+||+..+
T Consensus 334 et~~-klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~c 412 (1080)
T KOG1408|consen 334 ETTD-KLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFC 412 (1080)
T ss_pred CCCc-eEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccc
Confidence 8777 8999999999999999876544 344458888888876552 1346999999999999999752
Q ss_pred cEEEEeec--c--------------------------------CCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCc
Q 017553 162 ICILIFAG--A--------------------------------GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEF 207 (369)
Q Consensus 162 ~~~~~~~~--~--------------------------------~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~ 207 (369)
..-..+.. + -.....+.+++.+| ++++|++|..-|++++|++..
T Consensus 413 tnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp-~gqhLAsGDr~GnlrVy~Lq~- 490 (1080)
T KOG1408|consen 413 TNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSP-DGQHLASGDRGGNLRVYDLQE- 490 (1080)
T ss_pred cccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECC-CcceecccCccCceEEEEehh-
Confidence 21111000 0 02345689999999 999999999999999999998
Q ss_pred eeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee-----CcEEEEeecCCeEEEecCCCCCCCCCCCcccee
Q 017553 208 WTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-----GDFILSKSVDNEIVLWEPKMKEQSPGEGTADIL 282 (369)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 282 (369)
......+..|...|.|+.|+ .++|++++.|..|++||....-. ++
T Consensus 491 ----------------------l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~--------l~ 540 (1080)
T KOG1408|consen 491 ----------------------LEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYD--------LV 540 (1080)
T ss_pred ----------------------hhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccc--------hh
Confidence 34456778999999999998 45899999999999999875432 34
Q ss_pred eeccCCCCCeeEEEEe-------------------------------------------------ecCCccEEEEecCCC
Q 017553 283 QKYPVPECDIWFIKFS-------------------------------------------------CDFHYNAAAIGNREG 313 (369)
Q Consensus 283 ~~~~~~~~~i~~~~~s-------------------------------------------------~~~~~~~l~~~~~dg 313 (369)
+++..|...|+++.|. |.. .++++++.|.
T Consensus 541 qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~--k~v~t~cQDr 618 (1080)
T KOG1408|consen 541 QTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTS--KLVVTVCQDR 618 (1080)
T ss_pred hhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCc--ceEEEEeccc
Confidence 4444444445444444 444 3889999999
Q ss_pred eEEEEEccCCCceeEEEee-cCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 314 KIFVWELQSSPPVLIARLS-HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 314 ~i~i~d~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
.|+|||+++++ ..+.++ ..+|.+....+...|.|-|||+.+.|.++.++|+.+
T Consensus 619 nirif~i~sgK--q~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~s 672 (1080)
T KOG1408|consen 619 NIRIFDIESGK--QVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVS 672 (1080)
T ss_pred ceEEEeccccc--eeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEecc
Confidence 99999999995 445554 336667788899999999999999999999999754
No 134
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.96 E-value=8.4e-26 Score=181.37 Aligned_cols=314 Identities=13% Similarity=0.163 Sum_probs=223.0
Q ss_pred cccccceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc---EEEEEecCCceeEEEeeeccCCcccceeEEEeee
Q 017553 17 PSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR---VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWAC 93 (369)
Q Consensus 17 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~---v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 93 (369)
.|+...+...+.+......|+|++||+.+ .|.+|+.-..+. +.+||...+......+. ..+.|....|.
T Consensus 138 iWdsv~L~TL~V~g~f~~GV~~vaFsk~~--~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~-----sne~v~~a~FH- 209 (626)
T KOG2106|consen 138 IWDSVTLSTLHVIGFFDRGVTCVAFSKIN--GGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKT-----SNEVVFLATFH- 209 (626)
T ss_pred ecccccceeeeeeccccccceeeeecccC--CCceEEEecCCCccccchhhchhhhccCccee-----ccceEEEEEec-
Confidence 34444555556666678889999999976 477777665443 99999998887777663 45667777777
Q ss_pred cCCCccEEEEeecCCeEEEEEcCCccccce---eecc-ccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeec
Q 017553 94 NVDGIPFLVAGGINGIIRVIDVSNEKLHKS---FVGH-GDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAG 169 (369)
Q Consensus 94 ~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~---~~~~-~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 169 (369)
|.+.+++++.+ .|.+..|+++.+.+.++ ++.+ ..-|.|++|.+ ++ -+++|..+|.|.||+..+.+..+...
T Consensus 210 -Ptd~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~e-ng-dviTgDS~G~i~Iw~~~~~~~~k~~~- 284 (626)
T KOG2106|consen 210 -PTDPNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLE-NG-DVITGDSGGNILIWSKGTNRISKQVH- 284 (626)
T ss_pred -cCCCcEEEEeC-CceEEEEEccCCceEEEeeccccccceEEEEEEEcC-CC-CEEeecCCceEEEEeCCCceEEeEee-
Confidence 87775666666 57899999988765433 3332 26799999998 54 47899999999999998887777766
Q ss_pred cCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCC---------CCCC---------CCceeec
Q 017553 170 AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDL---------PSKF---------PTKYVQF 231 (369)
Q Consensus 170 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~---------~~~~---------~~~~~~~ 231 (369)
.|.+.|.+++... ++. |++|+.|+.|..|| ...+...+..+...-. .... .......
T Consensus 285 --aH~ggv~~L~~lr-~Gt-llSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~ 359 (626)
T KOG2106|consen 285 --AHDGGVFSLCMLR-DGT-LLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENG 359 (626)
T ss_pred --ecCCceEEEEEec-Ccc-EeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCC
Confidence 7999999999996 665 66699999999999 3222111111110000 0000 0000011
Q ss_pred ceeeeccCCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEe
Q 017553 232 PVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG 309 (369)
Q Consensus 232 ~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~ 309 (369)
......+|......++.. .+++++++.|+.+++|+ ..+ +.-. ..-..+..++.|.|.+ .++.|
T Consensus 360 f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k---------~~wt-~~~~d~~~~~~fhpsg---~va~G 424 (626)
T KOG2106|consen 360 FTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHK---------LEWT-KIIEDPAECADFHPSG---VVAVG 424 (626)
T ss_pred ceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCc---------eeEE-EEecCceeEeeccCcc---eEEEe
Confidence 122345677777777765 67999999999999999 222 1111 1123567899999998 89999
Q ss_pred cCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 310 NREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 310 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
+..|...+.|.++.. .+.... . ..+++.|.|+|+|.+||.|+.|+.|+||.+..
T Consensus 425 t~~G~w~V~d~e~~~--lv~~~~--d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~ 478 (626)
T KOG2106|consen 425 TATGRWFVLDTETQD--LVTIHT--D-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSA 478 (626)
T ss_pred eccceEEEEecccce--eEEEEe--c-CCceEEEEEcCCCCEEEEecCCCeEEEEEECC
Confidence 999999999999863 333222 2 58999999999999999999999999998764
No 135
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=9.3e-28 Score=203.91 Aligned_cols=205 Identities=20% Similarity=0.276 Sum_probs=163.6
Q ss_pred cceee-ccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCc-------------------------------------
Q 017553 121 HKSFV-GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI------------------------------------- 162 (369)
Q Consensus 121 ~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~------------------------------------- 162 (369)
.+.+. .|.+.|+++.|++ ++++||+||.||.|+||.+...+
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~-DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSH-DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred eeccccccCCcEEEEEeCC-CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 45556 7999999999999 99999999999999999886500
Q ss_pred -----------------------EEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccC
Q 017553 163 -----------------------CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTD 219 (369)
Q Consensus 163 -----------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~ 219 (369)
+++. +.+|.+.|.++.|+ ..++|++++.|.+|++|++..
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~e---f~GHt~DILDlSWS--Kn~fLLSSSMDKTVRLWh~~~------------- 399 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCE---FKGHTADILDLSWS--KNNFLLSSSMDKTVRLWHPGR------------- 399 (712)
T ss_pred ccccccCCccccCCCccccccccchhh---hhccchhheecccc--cCCeeEeccccccEEeecCCC-------------
Confidence 0011 12899999999999 467899999999999999987
Q ss_pred CCCCCCCceeecceeeeccCCCceeeeeee---CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEE
Q 017553 220 LPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIK 296 (369)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 296 (369)
...+ ....|.+.|+|++|+ .+++++|+-|+.+|||++...+ +..+..-..-|++++
T Consensus 400 ----------~~CL-~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~----------Vv~W~Dl~~lITAvc 458 (712)
T KOG0283|consen 400 ----------KECL-KVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK----------VVDWNDLRDLITAVC 458 (712)
T ss_pred ----------ccee-eEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCe----------eEeehhhhhhheeEE
Confidence 2233 344699999999997 7799999999999999998775 333333347899999
Q ss_pred EeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecC-----CCccceEEEEecCCC-CEEEEeecCCeEEEEecCC
Q 017553 297 FSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHA-----QSKSPIRQTAMSYDG-STILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 297 ~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~-~~l~s~~~dg~i~vw~~~~ 368 (369)
|+|+|+ ..++|+.+|.+++|+....+......+... .| ..|+.+.|.|.. ..+++.+.|..|||+|.++
T Consensus 459 y~PdGk--~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~-~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~ 533 (712)
T KOG0283|consen 459 YSPDGK--GAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQG-KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRD 533 (712)
T ss_pred eccCCc--eEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccC-ceeeeeEecCCCCCeEEEecCCCceEEEeccc
Confidence 999997 889999999999999998754433333311 23 379999999754 3577788999999999843
No 136
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.96 E-value=1e-27 Score=197.81 Aligned_cols=165 Identities=19% Similarity=0.226 Sum_probs=131.0
Q ss_pred CCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee---C
Q 017553 174 RNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---G 250 (369)
Q Consensus 174 ~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~ 250 (369)
...|+.+.|.|.+...|++++.||.|++|.+..+... +....+...+..|...|+++.|. .
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~----------------e~~~tPe~~lt~h~eKI~slRfHPLAa 690 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLP----------------ENEMTPEKILTIHGEKITSLRFHPLAA 690 (1012)
T ss_pred CceeeecccCCCChHHeeecccCceEEEEEeccCCCC----------------cccCCcceeeecccceEEEEEecchhh
Confidence 4468999999999999999999999999999873211 11134566788999999999998 7
Q ss_pred cEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEE
Q 017553 251 DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR 330 (369)
Q Consensus 251 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 330 (369)
+.|++++.|.+|++||+++.+ ....+.+|...|..++|||+|+ .+++.+.||+|++|+.++++. .+.+
T Consensus 691 dvLa~asyd~Ti~lWDl~~~~---------~~~~l~gHtdqIf~~AWSpdGr--~~AtVcKDg~~rVy~Prs~e~-pv~E 758 (1012)
T KOG1445|consen 691 DVLAVASYDSTIELWDLANAK---------LYSRLVGHTDQIFGIAWSPDGR--RIATVCKDGTLRVYEPRSREQ-PVYE 758 (1012)
T ss_pred hHhhhhhccceeeeeehhhhh---------hhheeccCcCceeEEEECCCCc--ceeeeecCceEEEeCCCCCCC-cccc
Confidence 899999999999999999887 5778889999999999999997 999999999999999988753 3333
Q ss_pred eecCCCccceEEEEecCCCCEEEEeecCCe----EEEEecC
Q 017553 331 LSHAQSKSPIRQTAMSYDGSTILSCCEDGA----IWRWDAI 367 (369)
Q Consensus 331 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~----i~vw~~~ 367 (369)
-.. .-...-..+.|.-||+++++.+.|.. |.+||.+
T Consensus 759 g~g-pvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq 798 (1012)
T KOG1445|consen 759 GKG-PVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQ 798 (1012)
T ss_pred CCC-CccCcceeEEEEecCcEEEEecccccchhhhhhhhhh
Confidence 221 11123346788889999998887653 6666643
No 137
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4.4e-26 Score=171.97 Aligned_cols=264 Identities=16% Similarity=0.257 Sum_probs=197.2
Q ss_pred ccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCC
Q 017553 30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING 108 (369)
Q Consensus 30 ~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg 108 (369)
.+|.+-|.++.|.+ .|+.+|+|+.|+ |+|||..+....-....... .|.+.|..+.|....-|+ .+|+++.|+
T Consensus 10 s~h~DlihdVs~D~----~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wr-ah~~Si~rV~WAhPEfGq-vvA~cS~Dr 83 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDF----YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWR-AHDGSIWRVVWAHPEFGQ-VVATCSYDR 83 (361)
T ss_pred cCCcceeeeeeecc----cCceeeeccCCCcEEEEeccCCCCceEEeeeEE-ecCCcEEEEEecCccccc-eEEEEecCC
Confidence 58999999999999 799999999999 99999755443333322222 689999999999766788 999999999
Q ss_pred eEEEEEcCCc---------cccceeeccccceEEEEecCC-CCceEEEEeCCCcEEEEEccCCcEEE------Eee----
Q 017553 109 IIRVIDVSNE---------KLHKSFVGHGDSINEIRTQPL-KPSLVVSASKDESVRLWNVQTGICIL------IFA---- 168 (369)
Q Consensus 109 ~i~vwd~~~~---------~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~------~~~---- 168 (369)
++.||.-... ....++......|+++.|.|. -+-.+++++.||.+|||+......+. .++
T Consensus 84 tv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~ 163 (361)
T KOG2445|consen 84 TVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVID 163 (361)
T ss_pred ceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccC
Confidence 9999985211 123455567789999999994 24578999999999999876432222 111
Q ss_pred ccCCCCCcEEEEEecCC--CceEEEEEeeC-----CcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCC
Q 017553 169 GAGGHRNEVLSVDFHPS--DIYRIASCGMD-----NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN 241 (369)
Q Consensus 169 ~~~~~~~~v~~~~~~~~--~~~~l~~~~~d-----~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (369)
.+..+..+..|+.|+|. ...+|+.|+.+ +.++||....... .-..+..+..|..
T Consensus 164 pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~r-------------------Kw~kva~L~d~~d 224 (361)
T KOG2445|consen 164 PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGR-------------------KWLKVAELPDHTD 224 (361)
T ss_pred CcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcc-------------------eeeeehhcCCCCC
Confidence 22246677889999872 24567777765 4788998776321 1223456679999
Q ss_pred ceeeeeee---C---cEEEEeecCCeEEEecCCCCCC-----------CCCCCccceeeeccCCCCCeeEEEEeecCCcc
Q 017553 242 YVDCNRWL---G---DFILSKSVDNEIVLWEPKMKEQ-----------SPGEGTADILQKYPVPECDIWFIKFSCDFHYN 304 (369)
Q Consensus 242 ~v~~~~~~---~---~~l~~~~~d~~i~i~d~~~~~~-----------~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~ 304 (369)
+|+.++|. | .++++++.|| |+||.+..... ....-....+..+..|.+.++.+.|.-.|.
T Consensus 225 pI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGt-- 301 (361)
T KOG2445|consen 225 PIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGT-- 301 (361)
T ss_pred cceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeee--
Confidence 99999996 2 3789999999 99999985321 112224456777889999999999999995
Q ss_pred EEEEecCCCeEEEEEcc
Q 017553 305 AAAIGNREGKIFVWELQ 321 (369)
Q Consensus 305 ~l~~~~~dg~i~i~d~~ 321 (369)
.|++.+.||.|++|...
T Consensus 302 iLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 302 ILSSTGDDGCVRLWKAN 318 (361)
T ss_pred EEeecCCCceeeehhhh
Confidence 99999999999999765
No 138
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.96 E-value=8.9e-27 Score=180.33 Aligned_cols=254 Identities=19% Similarity=0.296 Sum_probs=190.8
Q ss_pred ccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCc-------e----eEEEeeeccCCcccceeEEEeeecCCC
Q 017553 30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG-------V----IAALQSYVDEDKEESFYTVSWACNVDG 97 (369)
Q Consensus 30 ~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~-------~----~~~~~~~~~~~~~~~v~~~~~~~~~~g 97 (369)
-.|.+.|+.+.-++.. +..+.|+-++.+ |.||++...- . ...-+-+....|...=+.++|++...|
T Consensus 148 i~h~g~~NRvr~~~~~--~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g 225 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLG--NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG 225 (440)
T ss_pred cccccccceeeecccC--CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc
Confidence 4788899999988843 345667777777 9999985210 0 000111222357788899999965566
Q ss_pred ccEEEEeecCCeEEEEEcCCccc---cceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCc---EEEEeeccC
Q 017553 98 IPFLVAGGINGIIRVIDVSNEKL---HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI---CILIFAGAG 171 (369)
Q Consensus 98 ~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~ 171 (369)
. |++|.--+.|++|...++.- ...+.+|+..|..++|+|.....|++||.||+|+|||++.+. ++.. +
T Consensus 226 ~--LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-k--- 299 (440)
T KOG0302|consen 226 R--LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-K--- 299 (440)
T ss_pred c--cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-e---
Confidence 4 99998889999999988753 345667999999999999888999999999999999999883 3333 3
Q ss_pred CCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--
Q 017553 172 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-- 249 (369)
Q Consensus 172 ~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-- 249 (369)
.|...|+-+.|+. ...+|++|+.||+++|||+|..+ ...|+..+..|..+|+++.|+
T Consensus 300 Ah~sDVNVISWnr-~~~lLasG~DdGt~~iwDLR~~~--------------------~~~pVA~fk~Hk~pItsieW~p~ 358 (440)
T KOG0302|consen 300 AHNSDVNVISWNR-REPLLASGGDDGTLSIWDLRQFK--------------------SGQPVATFKYHKAPITSIEWHPH 358 (440)
T ss_pred ccCCceeeEEccC-CcceeeecCCCceEEEEEhhhcc--------------------CCCcceeEEeccCCeeEEEeccc
Confidence 7999999999998 55699999999999999999832 246888999999999999998
Q ss_pred -CcEEEEeecCCeEEEecCCCCCCCC------CCC----ccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCe
Q 017553 250 -GDFILSKSVDNEIVLWEPKMKEQSP------GEG----TADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGK 314 (369)
Q Consensus 250 -~~~l~~~~~d~~i~i~d~~~~~~~~------~~~----~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~ 314 (369)
...|++++.|.+|.+||+....... ... +.+++.... -...+..+.|++.-++ ++++.+.||.
T Consensus 359 e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHq-GQke~KevhWH~QiPG-~lvsTa~dGf 432 (440)
T KOG0302|consen 359 EDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQ-GQKEVKEVHWHRQIPG-LLVSTAIDGF 432 (440)
T ss_pred cCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEec-chhHhhhheeccCCCC-eEEEecccce
Confidence 6689999999999999997654311 000 111111111 2356778899988774 7787778874
No 139
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=1.1e-28 Score=205.76 Aligned_cols=253 Identities=19% Similarity=0.311 Sum_probs=213.3
Q ss_pred cEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccc
Q 017553 50 NVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHG 128 (369)
Q Consensus 50 ~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 128 (369)
.+++...... +++|+..... .|...+.++... ..++ .+++|+.|..+.+|.+.....+..+.+|.
T Consensus 5 ~~~m~~~~~t~Lr~~~~~~~~-----------~hsaav~~lk~~--~s~r-~~~~Gg~~~k~~L~~i~kp~~i~S~~~he 70 (825)
T KOG0267|consen 5 EFLMKTKRATKLRVWDTREFV-----------AHSAAVGCLKIR--KSSR-SLVTGGEDEKVNLWAIGKPNAITSLTGHE 70 (825)
T ss_pred cccceeeeeeccccccchhhh-----------hhhhhhceeeee--ccce-eeccCCCceeeccccccCCchhheeeccC
Confidence 3444444444 7788754322 355566666654 4566 89999999999999998888888899999
Q ss_pred cceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCce
Q 017553 129 DSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 208 (369)
Q Consensus 129 ~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~ 208 (369)
.+|.++.|++ ...+|++|+.+|+|++||++..+.++.+. +|...+.++.|+| -+.++++|+.|+.+++||++.
T Consensus 71 spIeSl~f~~-~E~LlaagsasgtiK~wDleeAk~vrtLt---gh~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk-- 143 (825)
T KOG0267|consen 71 SPIESLTFDT-SERLLAAGSASGTIKVWDLEEAKIVRTLT---GHLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRK-- 143 (825)
T ss_pred CcceeeecCc-chhhhcccccCCceeeeehhhhhhhhhhh---ccccCcceeeecc-ceEEeccccccccceehhhhc--
Confidence 9999999999 88999999999999999999999999888 8999999999999 888899999999999999997
Q ss_pred eeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeecc
Q 017553 209 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP 286 (369)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 286 (369)
..+...+.+|...+.++.|. |.++++++.|..++|||+..++ .+..|.
T Consensus 144 ---------------------~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk---------~~~ef~ 193 (825)
T KOG0267|consen 144 ---------------------KGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGK---------LSKEFK 193 (825)
T ss_pred ---------------------cCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccc---------cccccc
Confidence 45677788899999999997 7799999999999999999887 788899
Q ss_pred CCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCC
Q 017553 287 VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDG 359 (369)
Q Consensus 287 ~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 359 (369)
.|++.+..+.|+|..- +++.|+.|+++++||+++. ..+.... .....|.+..|+|++..+++|....
T Consensus 194 ~~e~~v~sle~hp~e~--Lla~Gs~d~tv~f~dletf--e~I~s~~--~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 194 SHEGKVQSLEFHPLEV--LLAPGSSDRTVRFWDLETF--EVISSGK--PETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred cccccccccccCchhh--hhccCCCCceeeeecccee--EEeeccC--CccCCceeeeecCCceeeecCchhh
Confidence 9999999999999874 8899999999999999976 3344333 3457899999999999998886543
No 140
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.96 E-value=5.3e-27 Score=193.24 Aligned_cols=275 Identities=19% Similarity=0.237 Sum_probs=192.0
Q ss_pred eEEEeeecCCCccEEEEeecCCeEEEEEcCCccc------cceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccC
Q 017553 87 YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL------HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 160 (369)
Q Consensus 87 ~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 160 (369)
+...|+..++.+++|+.+.++|.|.++|...... +..+..|...|..+.|-| ....|++++.|.++++||+.+
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~ 131 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKT 131 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-CceeEEEccCCceeeeeeecc
Confidence 3366666677778999999999999999765422 355667999999999999 889999999999999999999
Q ss_pred CcEEEE--eeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeec----cCCCCCCCCceeeccee
Q 017553 161 GICILI--FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTW----TDLPSKFPTKYVQFPVF 234 (369)
Q Consensus 161 ~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 234 (369)
+++... +. +|.+.|.+++|.|.+...|++|+.||.+.|||++.........+.. .......+.........
T Consensus 132 s~l~G~~~~~---GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~ 208 (720)
T KOG0321|consen 132 SRLVGGRLNL---GHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIR 208 (720)
T ss_pred ceeecceeec---ccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccc
Confidence 888766 55 8999999999999999999999999999999999743111111000 00000011122222223
Q ss_pred eeccCCCc----eeeeeee-CcEEEEeec-CCeEEEecCCCCCCCCCCCccceeeeccCC---CCCeeEEEEeecCCccE
Q 017553 235 IASVHSNY----VDCNRWL-GDFILSKSV-DNEIVLWEPKMKEQSPGEGTADILQKYPVP---ECDIWFIKFSCDFHYNA 305 (369)
Q Consensus 235 ~~~~~~~~----v~~~~~~-~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~s~~~~~~~ 305 (369)
....+... |+.+.|- ...|++++. |+.|++||++.........+. ....+..+ .-.+.++.....| .+
T Consensus 209 k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~-~~~~~~t~skrs~G~~nL~lDssG--t~ 285 (720)
T KOG0321|consen 209 KWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPR-GSDKYPTHSKRSVGQVNLILDSSG--TY 285 (720)
T ss_pred ccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCC-cccCccCcccceeeeEEEEecCCC--Ce
Confidence 33334433 5556664 778888888 999999999987653332222 12233333 2344555555555 47
Q ss_pred EEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 306 AAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 306 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
|.+.+.|+.|++|++.+........+.+......-..-..+||+.+|++|+.|...++|.+..
T Consensus 286 L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~ 348 (720)
T KOG0321|consen 286 LFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSS 348 (720)
T ss_pred EEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecC
Confidence 777777999999999987655555554222222223445689999999999999999999864
No 141
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.9e-27 Score=199.87 Aligned_cols=239 Identities=16% Similarity=0.306 Sum_probs=188.3
Q ss_pred eeEEEeeecCCCccEEEEeecCCeEEEEEcCCccc----cceeec---cccceEEEEecCCCCceEEEEeCCCcEEEEEc
Q 017553 86 FYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL----HKSFVG---HGDSINEIRTQPLKPSLVVSASKDESVRLWNV 158 (369)
Q Consensus 86 v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~----~~~~~~---~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~ 158 (369)
...++.. ++-. .++.++. ..+.+|.+..... ...++. -.-.+..+.|.....++|++++..|.|.+||+
T Consensus 42 ~nAIs~n--r~~~-qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 42 ANAISVN--RDIN-QIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDL 117 (839)
T ss_pred cceEeec--CCcc-eeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEec
Confidence 3344444 6655 4555553 3577777654321 111111 11346678898778899999999999999999
Q ss_pred cC---CcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceee
Q 017553 159 QT---GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI 235 (369)
Q Consensus 159 ~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (369)
.. .+.+..+. .|+..+.+++|++...++|++|+.||+|++||++. ......
T Consensus 118 nk~~rnk~l~~f~---EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~-----------------------~~S~~t 171 (839)
T KOG0269|consen 118 NKSIRNKLLTVFN---EHERSANKLDFHSTEPNILISGSQDGTVKCWDLRS-----------------------KKSKST 171 (839)
T ss_pred CccccchhhhHhh---hhccceeeeeeccCCccEEEecCCCceEEEEeeec-----------------------cccccc
Confidence 86 44455555 79999999999998899999999999999999998 344556
Q ss_pred eccCCCceeeeeee---CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCC
Q 017553 236 ASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE 312 (369)
Q Consensus 236 ~~~~~~~v~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~d 312 (369)
+......|+.+.|+ +..++++...|.+++||++...+ +...+..|.++|.++.|+|++. +||+|+.|
T Consensus 172 ~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r--------~~~k~~AH~GpV~c~nwhPnr~--~lATGGRD 241 (839)
T KOG0269|consen 172 FRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDR--------CEKKLTAHNGPVLCLNWHPNRE--WLATGGRD 241 (839)
T ss_pred ccccchhhhceeeccCCCceEEEecCCceEEEeeccCchh--------HHHHhhcccCceEEEeecCCCc--eeeecCCC
Confidence 66678889999998 77999999999999999998765 7788899999999999999775 99999999
Q ss_pred CeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCC-EEEEee--cCCeEEEEecC
Q 017553 313 GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGS-TILSCC--EDGAIWRWDAI 367 (369)
Q Consensus 313 g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~--~dg~i~vw~~~ 367 (369)
+.|+|||..+.+......+.. ..+|.++.|-|+.+ .||+++ .|-.|+|||+.
T Consensus 242 K~vkiWd~t~~~~~~~~tInT---iapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvr 296 (839)
T KOG0269|consen 242 KMVKIWDMTDSRAKPKHTINT---IAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVR 296 (839)
T ss_pred ccEEEEeccCCCccceeEEee---cceeeeeeeccCccchhhhhhccccceEEEEeec
Confidence 999999999877666666643 37899999999875 466665 57789999985
No 142
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=5.6e-26 Score=194.66 Aligned_cols=250 Identities=16% Similarity=0.167 Sum_probs=200.8
Q ss_pred CcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCc-cccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEcc
Q 017553 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE-KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 159 (369)
Q Consensus 81 ~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~ 159 (369)
.|......++|. |+|. +|++++.||.|++|+.... +...++..+...|.+++.. .+.|++|+.+++|.+|.+.
T Consensus 11 aht~G~t~i~~d--~~ge-fi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~---s~~f~~~s~~~tv~~y~fp 84 (933)
T KOG1274|consen 11 AHTGGLTLICYD--PDGE-FICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY---SNHFLTGSEQNTVLRYKFP 84 (933)
T ss_pred hccCceEEEEEc--CCCC-EEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec---ccceEEeeccceEEEeeCC
Confidence 466667778888 9999 9999999999999997766 4455555578888888875 4589999999999999999
Q ss_pred CCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccC
Q 017553 160 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH 239 (369)
Q Consensus 160 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (369)
+++.-..+. ..+-++.+++|+- ++.+++.|+.|-.|++.++.. ......+.+|
T Consensus 85 s~~~~~iL~---Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D-----------------------~s~~~~lrgh 137 (933)
T KOG1274|consen 85 SGEEDTILA---RFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDD-----------------------SSQEKVLRGH 137 (933)
T ss_pred CCCccceee---eeeccceEEEEec-CCcEEEeecCceeEEEEeccc-----------------------cchheeeccc
Confidence 887665555 3677899999998 899999999999999999988 3456788899
Q ss_pred CCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEE
Q 017553 240 SNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFV 317 (369)
Q Consensus 240 ~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i 317 (369)
..+|.++.|+ +++|++.+.||.|++||+.++..............+. ....+..++|+|++. .++....|+.|.+
T Consensus 138 ~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~-~s~i~~~~aW~Pk~g--~la~~~~d~~Vkv 214 (933)
T KOG1274|consen 138 DAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFI-LSRICTRLAWHPKGG--TLAVPPVDNTVKV 214 (933)
T ss_pred CCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCcccccc-ccceeeeeeecCCCC--eEEeeccCCeEEE
Confidence 9999999998 7899999999999999999886432222111111111 134567899999976 7888889999999
Q ss_pred EEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 318 WELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 318 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
|+..+.+. ...+....+...+..++|+|+|+|||+++.||.|.|||+++
T Consensus 215 y~r~~we~--~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 215 YSRKGWEL--QFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred EccCCcee--heeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 99999854 44444335556699999999999999999999999999873
No 143
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.4e-25 Score=192.17 Aligned_cols=282 Identities=14% Similarity=0.172 Sum_probs=216.0
Q ss_pred cCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCC-ceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCC
Q 017553 31 EGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEG-GVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING 108 (369)
Q Consensus 31 ~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg 108 (369)
.|+..-+.|+|.| +|+++.+++.|+ |++|+.... +....+. .+...|.+++.. +. .|++|+.++
T Consensus 11 aht~G~t~i~~d~----~gefi~tcgsdg~ir~~~~~sd~e~P~ti~-----~~g~~v~~ia~~----s~-~f~~~s~~~ 76 (933)
T KOG1274|consen 11 AHTGGLTLICYDP----DGEFICTCGSDGDIRKWKTNSDEEEPETID-----ISGELVSSIACY----SN-HFLTGSEQN 76 (933)
T ss_pred hccCceEEEEEcC----CCCEEEEecCCCceEEeecCCcccCCchhh-----ccCceeEEEeec----cc-ceEEeeccc
Confidence 6888899999999 689999999999 999997655 3333332 155666666643 44 899999999
Q ss_pred eEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCce
Q 017553 109 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY 188 (369)
Q Consensus 109 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 188 (369)
+|.+|.+.+++.-..+...+-++.+++|+- ++++++.||.|-.|++.++.+......+. +|.++|.++.|+| .++
T Consensus 77 tv~~y~fps~~~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lr---gh~apVl~l~~~p-~~~ 151 (933)
T KOG1274|consen 77 TVLRYKFPSGEEDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLR---GHDAPVLQLSYDP-KGN 151 (933)
T ss_pred eEEEeeCCCCCccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeec---ccCCceeeeeEcC-CCC
Confidence 999999999887767777778999999999 99999999999999999999998888888 8999999999999 999
Q ss_pred EEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeecc-CCCceeeeeee--CcEEEEeecCCeEEEe
Q 017553 189 RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV-HSNYVDCNRWL--GDFILSKSVDNEIVLW 265 (369)
Q Consensus 189 ~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~--~~~l~~~~~d~~i~i~ 265 (369)
+|++.+.||.|++||+.++....... ... ..... ....+..++|+ +..++..+.|+.|++|
T Consensus 152 fLAvss~dG~v~iw~~~~~~~~~tl~----~v~------------k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy 215 (933)
T KOG1274|consen 152 FLAVSSCDGKVQIWDLQDGILSKTLT----GVD------------KDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVY 215 (933)
T ss_pred EEEEEecCceEEEEEcccchhhhhcc----cCC------------ccccccccceeeeeeecCCCCeEEeeccCCeEEEE
Confidence 99999999999999999843211110 000 00011 13445667776 5688888999999999
Q ss_pred cCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEe
Q 017553 266 EPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAM 345 (369)
Q Consensus 266 d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~ 345 (369)
+..+.+... ......+...+..+.|+|+|+ |||+++.+|.|.|||+++-.. . .....|.+++|
T Consensus 216 ~r~~we~~f-------~Lr~~~~ss~~~~~~wsPnG~--YiAAs~~~g~I~vWnv~t~~~---~-----~~~~~Vc~~aw 278 (933)
T KOG1274|consen 216 SRKGWELQF-------KLRDKLSSSKFSDLQWSPNGK--YIAASTLDGQILVWNVDTHER---H-----EFKRAVCCEAW 278 (933)
T ss_pred ccCCceehe-------eecccccccceEEEEEcCCCc--EEeeeccCCcEEEEecccchh---c-----cccceeEEEec
Confidence 999886321 111122334488999999997 999999999999999998321 1 22367999999
Q ss_pred cCCCCEEEEeecCCeEEEE
Q 017553 346 SYDGSTILSCCEDGAIWRW 364 (369)
Q Consensus 346 s~~~~~l~s~~~dg~i~vw 364 (369)
.|++.-|-.-...|...+|
T Consensus 279 ~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 279 KPNANAITLITALGTLGVS 297 (933)
T ss_pred CCCCCeeEEEeeccccccC
Confidence 9998876555555544443
No 144
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.4e-24 Score=178.84 Aligned_cols=332 Identities=17% Similarity=0.134 Sum_probs=216.6
Q ss_pred ccccccccccccccccccccceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccC
Q 017553 2 ARTAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDE 80 (369)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~ 80 (369)
+.+++||.+.+..............+.|...++.|.+++|+| ++..+|+|+.|+ |++||..++..+.........
T Consensus 123 ~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~----~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~ 198 (691)
T KOG2048|consen 123 TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNP----TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDR 198 (691)
T ss_pred ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecC----CccEEEecccCceEEEEEcCCCceEEEeeecccc
Confidence 356788888876666666666777777777789999999999 578899999999 999999998877743332222
Q ss_pred C---cccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEE
Q 017553 81 D---KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN 157 (369)
Q Consensus 81 ~---~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd 157 (369)
. ...-|+++.+- .++ .|++|...|+|.+||...+.+++.+..|.+.|.+++..+ +++.+++++.|+.|..+.
T Consensus 199 l~k~~~~iVWSv~~L--rd~--tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~-~~d~vfsaGvd~~ii~~~ 273 (691)
T KOG2048|consen 199 LSKREPTIVWSVLFL--RDS--TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVAD-NEDRVFSAGVDPKIIQYS 273 (691)
T ss_pred cccCCceEEEEEEEe--ecC--cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcC-CCCeEEEccCCCceEEEE
Confidence 1 22335555554 666 599999999999999999999999999999999999999 889999999999999998
Q ss_pred ccCCcEE-EEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeee
Q 017553 158 VQTGICI-LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA 236 (369)
Q Consensus 158 ~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (369)
..++... ........|...|.+++..+ + .+++|+.|..+.+-..+......-. ....
T Consensus 274 ~~~~~~~wv~~~~r~~h~hdvrs~av~~-~--~l~sgG~d~~l~i~~s~~~~~~~h~-------------------~~~~ 331 (691)
T KOG2048|consen 274 LTTNKSEWVINSRRDLHAHDVRSMAVIE-N--ALISGGRDFTLAICSSREFKNMDHR-------------------QKNL 331 (691)
T ss_pred ecCCccceeeeccccCCcccceeeeeec-c--eEEecceeeEEEEccccccCchhhh-------------------cccc
Confidence 8776441 12222336889999999986 3 8999999999988776652110000 0000
Q ss_pred ccCCCceeeeeeeCcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEec------
Q 017553 237 SVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN------ 310 (369)
Q Consensus 237 ~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~------ 310 (369)
..+.. +..++- .++++.-=.+..+.+|.+-+.-.........+++-.......|.+.+.||+|+ +++.++
T Consensus 332 ~p~~~-~v~~a~-~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~--~Ia~st~~~~~i 407 (691)
T KOG2048|consen 332 FPASD-RVSVAP-ENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGN--LIAISTVSRTKI 407 (691)
T ss_pred ccccc-eeecCc-cceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCC--EEEEeeccceEE
Confidence 00000 000000 22233223334444444443321111111111111112223455555556554 444333
Q ss_pred -----------------------------------------CCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCC
Q 017553 311 -----------------------------------------REGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDG 349 (369)
Q Consensus 311 -----------------------------------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 349 (369)
....+..+++.+...+.+..+........|+.+..+|+|
T Consensus 408 y~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG 487 (691)
T KOG2048|consen 408 YRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDG 487 (691)
T ss_pred EEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCC
Confidence 334444444444433333333333455789999999999
Q ss_pred CEEEEeecCCeEEEEecCC
Q 017553 350 STILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 350 ~~l~s~~~dg~i~vw~~~~ 368 (369)
++||+.+.+|.|.+|++++
T Consensus 488 ~yiaa~~t~g~I~v~nl~~ 506 (691)
T KOG2048|consen 488 NYIAAISTRGQIFVYNLET 506 (691)
T ss_pred CEEEEEeccceEEEEEccc
Confidence 9999999999999999875
No 145
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.95 E-value=2e-24 Score=179.83 Aligned_cols=300 Identities=19% Similarity=0.248 Sum_probs=226.8
Q ss_pred cccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeE--EEeeeccCCcccceeEEEeeecCCCccEEEEee
Q 017553 29 LQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIA--ALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG 105 (369)
Q Consensus 29 ~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~ 105 (369)
+.||++-|+++.|+| .+..|.+++.|+ +.+|...+..-+- ...--.........+..-|+ |++. .+++-+
T Consensus 263 l~GHeDWV~sv~W~p----~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~--~n~~-~ii~~g 335 (764)
T KOG1063|consen 263 LMGHEDWVYSVWWHP----EGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWS--PNSN-VIIAHG 335 (764)
T ss_pred hcCcccceEEEEEcc----chhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEc--CCCC-EEEEec
Confidence 459999999999999 577888888888 9999976553222 22111111334567888888 8887 888889
Q ss_pred cCCeEEEEEcCCc---cccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCC---------------------
Q 017553 106 INGIIRVIDVSNE---KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG--------------------- 161 (369)
Q Consensus 106 ~dg~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~--------------------- 161 (369)
..|-.++|...+. .....+.+|.+.|.+++|.| .+.+|++.+.|.+-|++-.-..
T Consensus 336 ~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~p-sGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~ 414 (764)
T KOG1063|consen 336 RTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDP-SGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLS 414 (764)
T ss_pred ccCcEEEEeccCccceeeccccccccccceeeeecC-CCCEEEEeccccceeeecccccccceeeecccccccccceeee
Confidence 9999999983332 23455678999999999999 8999999999999888743200
Q ss_pred --------------cEEEEeeccC--------------------------------------------------------
Q 017553 162 --------------ICILIFAGAG-------------------------------------------------------- 171 (369)
Q Consensus 162 --------------~~~~~~~~~~-------------------------------------------------------- 171 (369)
+.++.+..+.
T Consensus 415 ~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~ 494 (764)
T KOG1063|consen 415 FVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLA 494 (764)
T ss_pred hccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccc
Confidence 0011111000
Q ss_pred ----------------------------CCCCcEEEEEecCCCceEEEEEeeCC-----cEEEEEccCceeeeeeeeecc
Q 017553 172 ----------------------------GHRNEVLSVDFHPSDIYRIASCGMDN-----TVKIWSMKEFWTYVEKSFTWT 218 (369)
Q Consensus 172 ----------------------------~~~~~v~~~~~~~~~~~~l~~~~~d~-----~v~i~d~~~~~~~~~~~~~~~ 218 (369)
+|...|++++.+| +++++++++... .|++|+..+
T Consensus 495 ~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~------------ 561 (764)
T KOG1063|consen 495 AAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTAN------------ 561 (764)
T ss_pred cCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccc------------
Confidence 8999999999999 999999987653 588999887
Q ss_pred CCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEE
Q 017553 219 DLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIK 296 (369)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 296 (369)
-..+..+..|.-.|+.+.|+ +++|++.+.|+++.+|.......... .....+.|..-|+.+.
T Consensus 562 -----------W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~-----~fa~~k~HtRIIWdcs 625 (764)
T KOG1063|consen 562 -----------WLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEF-----RFACLKAHTRIIWDCS 625 (764)
T ss_pred -----------hhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhh-----hhccccccceEEEEcc
Confidence 33455788999999999998 88999999999999999854432111 1334677888899999
Q ss_pred EeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCC-----CCEEEEeecCCeEEEEecC
Q 017553 297 FSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYD-----GSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 297 ~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~s~~~dg~i~vw~~~ 367 (369)
|+|++. ++++++.|.+|.+|.........+..+....+..+|++++|.|- +..++.|-..|.|.+|+..
T Consensus 626 W~pde~--~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 626 WSPDEK--YFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred cCcccc--eeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 999997 79999999999999998874334444333366689999999872 3378889999999999854
No 146
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.1e-26 Score=203.64 Aligned_cols=249 Identities=14% Similarity=0.243 Sum_probs=199.7
Q ss_pred CcccceeEEEeeecCCCcc---EEEEeecCCeEEEEEcCCc------cccceeeccccceEEEEecCCCCceEEEEeCCC
Q 017553 81 DKEESFYTVSWACNVDGIP---FLVAGGINGIIRVIDVSNE------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDE 151 (369)
Q Consensus 81 ~~~~~v~~~~~~~~~~g~~---~l~~~~~dg~i~vwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg 151 (369)
......+.++|. +.|.. +|+.|.+||.|.+||...- ..+.+...|++.|..+.|++..+++|++|+.||
T Consensus 62 ~s~~rF~kL~W~--~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~g 139 (1049)
T KOG0307|consen 62 QSSNRFNKLAWG--SYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDG 139 (1049)
T ss_pred cccccceeeeec--ccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCC
Confidence 356788899999 54442 5899999999999997652 346777789999999999998888999999999
Q ss_pred cEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeec
Q 017553 152 SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQF 231 (369)
Q Consensus 152 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (369)
.|.|||+..-+.-.... .....+.|.+++|+....+.|++++.+|.+.|||+|. ..
T Consensus 140 eI~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~-----------------------~~ 195 (1049)
T KOG0307|consen 140 EILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRK-----------------------KK 195 (1049)
T ss_pred cEEEeccCCcCCCCCCC-CCCCcccceEeccchhhhHHhhccCCCCCceeccccC-----------------------CC
Confidence 99999998754433332 1135678999999986788899999999999999998 34
Q ss_pred ceeeeccCCC--ceeeeeee---CcEEEEeecCC---eEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCc
Q 017553 232 PVFIASVHSN--YVDCNRWL---GDFILSKSVDN---EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHY 303 (369)
Q Consensus 232 ~~~~~~~~~~--~v~~~~~~---~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 303 (369)
++..+..+.. .+..+.|+ -..+++++.|. .|.+||+|.... +++.+..|...|.++.|++.+.
T Consensus 196 pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass--------P~k~~~~H~~GilslsWc~~D~- 266 (1049)
T KOG0307|consen 196 PIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS--------PLKILEGHQRGILSLSWCPQDP- 266 (1049)
T ss_pred cccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC--------chhhhcccccceeeeccCCCCc-
Confidence 4555555544 45678887 33666666654 499999987653 6788899999999999999885
Q ss_pred cEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCC-EEEEeecCCeEEEEecCC
Q 017553 304 NAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGS-TILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 304 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~vw~~~~ 368 (369)
.+|++++.|++|.+|+.+++ +.+..+. .....+..+.|+|... .++.++-||.|-|+.+..
T Consensus 267 ~lllSsgkD~~ii~wN~~tg--Evl~~~p--~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 267 RLLLSSGKDNRIICWNPNTG--EVLGELP--AQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred hhhhcccCCCCeeEecCCCc--eEeeecC--CCCcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 48999999999999999998 5666776 4557899999999765 889999999999998864
No 147
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.9e-25 Score=169.18 Aligned_cols=243 Identities=14% Similarity=0.208 Sum_probs=183.3
Q ss_pred EEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEee
Q 017553 89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFA 168 (369)
Q Consensus 89 ~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 168 (369)
.+..|++.|. +||+|..||.|.|||+.+...-+.+.+|..+|++++|++ ++..|++++.|..|.+||+..|.+++.+.
T Consensus 27 ~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~-dgr~LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 27 ECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSR-DGRKLLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred ceEEeccCcc-eeeeeccCCcEEEEEccccchhhhhhccccceeEEEecC-CCCEeeeecCCceeEEEeccCCCceeEEE
Confidence 3444459999 999999999999999999999999999999999999999 99999999999999999999999999997
Q ss_pred ccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeee
Q 017553 169 GAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW 248 (369)
Q Consensus 169 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 248 (369)
...+|....|+|.+.+.+++.-.+..-.+.++..+....... ..-..-...-.+..|
T Consensus 105 ----f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~-------------------d~d~dln~sas~~~f 161 (405)
T KOG1273|consen 105 ----FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPK-------------------DDDGDLNSSASHGVF 161 (405)
T ss_pred ----ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccC-------------------CCccccccccccccc
Confidence 889999999999777777777666666666665421111000 000000011111234
Q ss_pred e--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCC-CCeeEEEEeecCCccEEEEecCCCeEEEEEccCC--
Q 017553 249 L--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPE-CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS-- 323 (369)
Q Consensus 249 ~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~-- 323 (369)
+ |+++++|...|.+.++|..+.+ ++..++... ..|..+.++..++ .|+.-+.|..||.|+++.-
T Consensus 162 dr~g~yIitGtsKGkllv~~a~t~e---------~vas~rits~~~IK~I~~s~~g~--~liiNtsDRvIR~ye~~di~~ 230 (405)
T KOG1273|consen 162 DRRGKYIITGTSKGKLLVYDAETLE---------CVASFRITSVQAIKQIIVSRKGR--FLIINTSDRVIRTYEISDIDD 230 (405)
T ss_pred cCCCCEEEEecCcceEEEEecchhe---------eeeeeeechheeeeEEEEeccCc--EEEEecCCceEEEEehhhhcc
Confidence 4 9999999999999999999876 565555544 6788999999996 8999999999999998731
Q ss_pred -----CceeEEEeecCCCccceEEEEecCCCCEEEEeec-CCeEEEEecC
Q 017553 324 -----PPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCE-DGAIWRWDAI 367 (369)
Q Consensus 324 -----~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~i~vw~~~ 367 (369)
++....++..--....-.+++|+.+|.|++.++. -..++||.-.
T Consensus 231 ~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~ 280 (405)
T KOG1273|consen 231 EGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKS 280 (405)
T ss_pred cCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecC
Confidence 2222222221122345678999999999987773 4469999854
No 148
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.94 E-value=3.1e-24 Score=167.86 Aligned_cols=311 Identities=22% Similarity=0.308 Sum_probs=208.2
Q ss_pred CCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCce------eEEEeeeccCCcccceeEEEeeecCCCccEEEEe
Q 017553 32 GKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGV------IAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG 104 (369)
Q Consensus 32 h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~ 104 (369)
...+|+.+.|.+. ..+.+|||+.|. |+||.+..+.. +.-+.. ...|...|+++.|+ |+|. +|++|
T Consensus 12 ~~~pv~s~dfq~n---~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~--Ls~H~~aVN~vRf~--p~ge-lLASg 83 (434)
T KOG1009|consen 12 DHEPVYSVDFQKN---SLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSS--LSRHTRAVNVVRFS--PDGE-LLASG 83 (434)
T ss_pred CCCceEEEEeccC---cccceecccCccceeeeeeeecCCCCCceeEEEeec--ccCCcceeEEEEEc--CCcC-eeeec
Confidence 3568999999994 345999999999 99999874332 222222 23688999999998 9999 99999
Q ss_pred ecCCeEEEEEcC--------C--------ccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEee
Q 017553 105 GINGIIRVIDVS--------N--------EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFA 168 (369)
Q Consensus 105 ~~dg~i~vwd~~--------~--------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 168 (369)
+.+|.|.+|... + ....+.+.+|...|..++|+| ++.++++++.|..+++||+..|+....+.
T Consensus 84 ~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~l~~~~~ 162 (434)
T KOG1009|consen 84 GDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQLLAILD 162 (434)
T ss_pred CCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccceeEeecc
Confidence 999999999865 2 112355668999999999999 89999999999999999999999999888
Q ss_pred ccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeee
Q 017553 169 GAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW 248 (369)
Q Consensus 169 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 248 (369)
.|...+..++|.| -++++++-+.|...+.+.+............................+..-..-......++|
T Consensus 163 ---dh~~yvqgvawDp-l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsf 238 (434)
T KOG1009|consen 163 ---DHEHYVQGVAWDP-LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSF 238 (434)
T ss_pred ---ccccccceeecch-hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhccc
Confidence 7999999999999 889999999999888877765332222111000000000000000001111111122334444
Q ss_pred e--CcEEEEeec----C-----CeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeec---------------CC
Q 017553 249 L--GDFILSKSV----D-----NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCD---------------FH 302 (369)
Q Consensus 249 ~--~~~l~~~~~----d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~---------------~~ 302 (369)
. |.++++... . +..++|+-...++ +...++........+.|+|- -.
T Consensus 239 TPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~r--------P~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lp 310 (434)
T KOG1009|consen 239 TPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKR--------PAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLP 310 (434)
T ss_pred CCCCcEEEcccceeeeCCceeeceeEeeccccccC--------ceeecCCCCcceEEEEeeeeEEEeccccccccccccc
Confidence 4 555554321 1 2234555443332 45555555566666666651 11
Q ss_pred cc-EEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecC
Q 017553 303 YN-AAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 303 ~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 367 (369)
+. .++.++ .+.|++||.+...+.....- -|-..|++++|++||..|+..|.||...+--++
T Consensus 311 yrlvfaiAt-~~svyvydtq~~~P~~~v~n---ihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe 372 (434)
T KOG1009|consen 311 YRLVFAIAT-KNSVYVYDTQTLEPLAVVDN---IHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFE 372 (434)
T ss_pred cceEEEEee-cceEEEeccccccceEEEee---eeeeeecceeecCCCcEEEEeccCCceEEEEEc
Confidence 22 344444 45799999988754332221 455899999999999999999999987765544
No 149
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=3.8e-27 Score=196.74 Aligned_cols=236 Identities=19% Similarity=0.298 Sum_probs=202.9
Q ss_pred eecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEee
Q 017553 27 NKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG 105 (369)
Q Consensus 27 ~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~ 105 (369)
+.+-.|...|.|+..-. .++.+++|+.+. +-+|.+.+-..+..+. .|+.+|.++.|. ++.. +|++|+
T Consensus 22 ~~~~~hsaav~~lk~~~----s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~-----~hespIeSl~f~--~~E~-Llaags 89 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRK----SSRSLVTGGEDEKVNLWAIGKPNAITSLT-----GHESPIESLTFD--TSER-LLAAGS 89 (825)
T ss_pred hhhhhhhhhhceeeeec----cceeeccCCCceeeccccccCCchhheee-----ccCCcceeeecC--cchh-hhcccc
Confidence 34567899999999844 578999999998 8899987655555444 689999999998 6666 899999
Q ss_pred cCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCC
Q 017553 106 INGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS 185 (369)
Q Consensus 106 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 185 (369)
.+|+|++||+++.+.++++.+|...+..+.|+| -+.++++|+.|+.+++||.+...+...+. +|...|..++|+|
T Consensus 90 asgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~---s~~~vv~~l~lsP- 164 (825)
T KOG0267|consen 90 ASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRKKGCSHTYK---SHTRVVDVLRLSP- 164 (825)
T ss_pred cCCceeeeehhhhhhhhhhhccccCcceeeecc-ceEEeccccccccceehhhhccCceeeec---CCcceeEEEeecC-
Confidence 999999999999999999999999999999999 88899999999999999999888999988 7999999999999
Q ss_pred CceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEE
Q 017553 186 DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIV 263 (369)
Q Consensus 186 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~ 263 (369)
+|.+++.++.|.++++||+..+ .....+..|...+..+.|+ .-++++|+.|++++
T Consensus 165 ~Gr~v~~g~ed~tvki~d~~ag-----------------------k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~ 221 (825)
T KOG0267|consen 165 DGRWVASGGEDNTVKIWDLTAG-----------------------KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVR 221 (825)
T ss_pred CCceeeccCCcceeeeeccccc-----------------------ccccccccccccccccccCchhhhhccCCCCceee
Confidence 9999999999999999999883 4455677888888888887 44788999999999
Q ss_pred EecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCC
Q 017553 264 LWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG 313 (369)
Q Consensus 264 i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg 313 (369)
+||+++.+ .+.........|.+.+|+|++. .+++|....
T Consensus 222 f~dletfe---------~I~s~~~~~~~v~~~~fn~~~~--~~~~G~q~s 260 (825)
T KOG0267|consen 222 FWDLETFE---------VISSGKPETDGVRSLAFNPDGK--IVLSGEQIS 260 (825)
T ss_pred eeccceeE---------EeeccCCccCCceeeeecCCce--eeecCchhh
Confidence 99999765 5555555678899999999996 677776543
No 150
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.94 E-value=4.5e-25 Score=177.01 Aligned_cols=262 Identities=13% Similarity=0.266 Sum_probs=200.7
Q ss_pred eEEEEEeeccCCCccEEEEec--CCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEE
Q 017553 36 LYAVVFNFIDSRYFNVFATVG--GNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRV 112 (369)
Q Consensus 36 v~~~~~s~~~~~~~~~la~~~--~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~v 112 (369)
+.++.|+. .++|++++ +|. +++|. +.++ ..+++.... .....-.|++.. .... ++++|+..+.|+|
T Consensus 37 ~~s~~w~~-----~n~lvvas~~gdk~~~~~~-K~g~-~~~Vp~~~k-~~gd~~~Cv~~~--s~S~-y~~sgG~~~~Vki 105 (673)
T KOG4378|consen 37 DFSFNWQR-----RNFLVVASMAGDKVMRIKE-KDGK-TPEVPRVRK-LTGDNAFCVACA--SQSL-YEISGGQSGCVKI 105 (673)
T ss_pred ceeeeccc-----cceEEEeecCCceeEEEec-ccCC-CCccceeec-cccchHHHHhhh--hcce-eeeccCcCceeee
Confidence 89999987 34455544 555 77887 4444 222221111 112233333333 3335 8999999999999
Q ss_pred EEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEE
Q 017553 113 IDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIAS 192 (369)
Q Consensus 113 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 192 (369)
||++...+.+.+++|...|+++.++. ...+|++++..|.|.|..+.++.....+.. +....|.-+.|+|....+|.+
T Consensus 106 wdl~~kl~hr~lkdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~tt~f~~--~sgqsvRll~ys~skr~lL~~ 182 (673)
T KOG4378|consen 106 WDLRAKLIHRFLKDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQKTTTFTI--DSGQSVRLLRYSPSKRFLLSI 182 (673)
T ss_pred hhhHHHHHhhhccCCcceeEEEEecC-CcceeEEeccCCcEEEEecccCccccceec--CCCCeEEEeecccccceeeEe
Confidence 99997777889999999999999998 788999999999999999999988888873 234567789999977778889
Q ss_pred EeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecce-eeeccCCCceeeeeee---CcEEEEeecCCeEEEecCC
Q 017553 193 CGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV-FIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPK 268 (369)
Q Consensus 193 ~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~i~d~~ 268 (369)
++.+|.|.+||.... .|. .....|..+...++|+ ..+|++.+.|..|.+||.+
T Consensus 183 asd~G~VtlwDv~g~-----------------------sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~ 239 (673)
T KOG4378|consen 183 ASDKGAVTLWDVQGM-----------------------SPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIR 239 (673)
T ss_pred eccCCeEEEEeccCC-----------------------CcccchhhhccCCcCcceecCCccceEEEecccceEEEeecc
Confidence 999999999999882 233 3456799999999997 5689999999999999999
Q ss_pred CCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCC
Q 017553 269 MKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYD 348 (369)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 348 (369)
..+. ...+. ...+...++|+++|- +|+.|...|.|..||++..+ .++..+. .|...|++++|-|.
T Consensus 240 s~~s---------~~~l~-y~~Plstvaf~~~G~--~L~aG~s~G~~i~YD~R~~k-~Pv~v~s--ah~~sVt~vafq~s 304 (673)
T KOG4378|consen 240 SQAS---------TDRLT-YSHPLSTVAFSECGT--YLCAGNSKGELIAYDMRSTK-APVAVRS--AHDASVTRVAFQPS 304 (673)
T ss_pred cccc---------cceee-ecCCcceeeecCCce--EEEeecCCceEEEEecccCC-CCceEee--ecccceeEEEeeec
Confidence 7652 22222 245788999999995 99999999999999999865 4566666 77889999999876
Q ss_pred C
Q 017553 349 G 349 (369)
Q Consensus 349 ~ 349 (369)
-
T Consensus 305 ~ 305 (673)
T KOG4378|consen 305 P 305 (673)
T ss_pred c
Confidence 4
No 151
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.94 E-value=2.6e-25 Score=178.35 Aligned_cols=269 Identities=14% Similarity=0.209 Sum_probs=200.5
Q ss_pred cEEEEecCCcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCcc---c--ccee
Q 017553 50 NVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK---L--HKSF 124 (369)
Q Consensus 50 ~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~---~--~~~~ 124 (369)
++.+..++|.+++||....+....+-.+. .+..++.++|. ....-.+++.+.|..|++|.- .++ . +...
T Consensus 4 Nl~~aS~gd~~kl~D~s~~~~~~~~~~~t---~~pg~~s~~w~--~~n~lvvas~~gdk~~~~~~K-~g~~~~Vp~~~k~ 77 (673)
T KOG4378|consen 4 NLHVASTGDKTKLSDFSDLETKSEYVHQT---AEPGDFSFNWQ--RRNFLVVASMAGDKVMRIKEK-DGKTPEVPRVRKL 77 (673)
T ss_pred ceeeeccCCceEEeecccccCccccccCC---CCCcceeeecc--ccceEEEeecCCceeEEEecc-cCCCCccceeecc
Confidence 56677777889999988766555554443 33458889997 444213444567788999973 343 1 2222
Q ss_pred eccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEc
Q 017553 125 VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSM 204 (369)
Q Consensus 125 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~ 204 (369)
.+. .-.|++... ...++++|+..+.|+|||++...+.+.++ +|...|+++.++- ...+|++++..|.|.+..+
T Consensus 78 ~gd--~~~Cv~~~s-~S~y~~sgG~~~~Vkiwdl~~kl~hr~lk---dh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~ 150 (673)
T KOG4378|consen 78 TGD--NAFCVACAS-QSLYEISGGQSGCVKIWDLRAKLIHRFLK---DHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGT 150 (673)
T ss_pred ccc--hHHHHhhhh-cceeeeccCcCceeeehhhHHHHHhhhcc---CCcceeEEEEecC-CcceeEEeccCCcEEEEec
Confidence 222 334555444 44789999999999999999777777777 8999999999997 7889999999999999999
Q ss_pred cCceeeeeeeeeccCCCCCCCCceeecceeeecc-CCCceeeeeee---CcEEEEeecCCeEEEecCCCCCCCCCCCccc
Q 017553 205 KEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV-HSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTAD 280 (369)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 280 (369)
.++.. ...+.. ....|.-+.|+ ..+|.+++.+|.|.+||.....+
T Consensus 151 ~t~~~-----------------------tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp-------- 199 (673)
T KOG4378|consen 151 KTKQK-----------------------TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP-------- 199 (673)
T ss_pred ccCcc-----------------------ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc--------
Confidence 88432 112222 23345567776 34788899999999999987764
Q ss_pred eeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCe
Q 017553 281 ILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGA 360 (369)
Q Consensus 281 ~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 360 (369)
...-...|..+...++|+|..+ .+|++.+.|..|.+||....+ ....+... .+.+.++|+++|.+|+.|...|.
T Consensus 200 ~~~~~~~HsAP~~gicfspsne-~l~vsVG~Dkki~~yD~~s~~--s~~~l~y~---~Plstvaf~~~G~~L~aG~s~G~ 273 (673)
T KOG4378|consen 200 IFHASEAHSAPCRGICFSPSNE-ALLVSVGYDKKINIYDIRSQA--STDRLTYS---HPLSTVAFSECGTYLCAGNSKGE 273 (673)
T ss_pred ccchhhhccCCcCcceecCCcc-ceEEEecccceEEEeeccccc--ccceeeec---CCcceeeecCCceEEEeecCCce
Confidence 4445566888899999999887 688999999999999999763 44444322 67999999999999999999999
Q ss_pred EEEEecCC
Q 017553 361 IWRWDAIP 368 (369)
Q Consensus 361 i~vw~~~~ 368 (369)
|..||++.
T Consensus 274 ~i~YD~R~ 281 (673)
T KOG4378|consen 274 LIAYDMRS 281 (673)
T ss_pred EEEEeccc
Confidence 99999874
No 152
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.4e-25 Score=170.38 Aligned_cols=287 Identities=16% Similarity=0.209 Sum_probs=197.5
Q ss_pred cEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccce--eec
Q 017553 50 NVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKS--FVG 126 (369)
Q Consensus 50 ~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~--~~~ 126 (369)
..+|++-.++ |++||..+++.+..++. +...++.+.|.-. ++.+.+.+++.||+|++||++....... +..
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~-----~~~~~N~vrf~~~-ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~ 114 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKG-----PPATTNGVRFISC-DSPHGVISCSSDGTVRLWDIRSQAESARISWTQ 114 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecC-----CCCcccceEEecC-CCCCeeEEeccCCeEEEEEeecchhhhheeccC
Confidence 3455555555 99999999999998885 4455566777632 1334799999999999999987765443 344
Q ss_pred cc-cceEEEEecCCCCceEEEEe----CCCcEEEEEccCCcE-EEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEE
Q 017553 127 HG-DSINEIRTQPLKPSLVVSAS----KDESVRLWNVQTGIC-ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVK 200 (369)
Q Consensus 127 ~~-~~v~~~~~~~~~~~~l~s~~----~dg~i~vwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~ 200 (369)
+. .+..+++.+. ..+++++|. .+-.|.+||++..+. +..+.. .|.+.|++++|+|.+.++|++|+.||.|.
T Consensus 115 ~~~~~f~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~e--SH~DDVT~lrFHP~~pnlLlSGSvDGLvn 191 (376)
T KOG1188|consen 115 QSGTPFICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNE--SHNDDVTQLRFHPSDPNLLLSGSVDGLVN 191 (376)
T ss_pred CCCCcceEeeccC-cCCeEEeccccccCceEEEEEEeccccchhhhhhh--hccCcceeEEecCCCCCeEEeecccceEE
Confidence 54 4677888776 677888875 367899999998776 555544 79999999999999999999999999999
Q ss_pred EEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeeeC---cEEEEeecCCeEEEecCCCCCCCCCCC
Q 017553 201 IWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLG---DFILSKSVDNEIVLWEPKMKEQSPGEG 277 (369)
Q Consensus 201 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~d~~i~i~d~~~~~~~~~~~ 277 (369)
+||+..... ..++.....|...|.++.|.+ +.+.+-+......+|+++.+.......
T Consensus 192 lfD~~~d~E--------------------eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~ 251 (376)
T KOG1188|consen 192 LFDTKKDNE--------------------EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLE 251 (376)
T ss_pred eeecCCCcc--------------------hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhccc
Confidence 999987311 234445556788899999973 268888999999999999887432221
Q ss_pred ccceeeeccC---CCCCeeEEEEeecCCccEEEEecCCCeEEEEEccC---CCc-eeEEEeecCCCccceEEEEecCCCC
Q 017553 278 TADILQKYPV---PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS---SPP-VLIARLSHAQSKSPIRQTAMSYDGS 350 (369)
Q Consensus 278 ~~~~~~~~~~---~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~---~~~-~~~~~~~~~~~~~~v~~~~~s~~~~ 350 (369)
.......... ....+.. ..+|.......+.|+.-|...++-+.. +.. .....+ +.+|..-|.++.|...+.
T Consensus 252 ~~~~~~~d~r~~~~~dY~I~-~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l-~g~~~eiVR~i~~~~~~~ 329 (376)
T KOG1188|consen 252 NPDVSADDLRKEDNCDYVIN-EHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAIL-QGGHEEIVRDILFDVKND 329 (376)
T ss_pred CccchhhhHHhhhhhhheee-cccCCCcceEEEeccccCceeEEEeeecccccccCccccc-cCCcHHHHHHHhhhcccc
Confidence 1100000000 0011111 233444433444454466666665542 221 122222 345778889999999999
Q ss_pred EEEEeecCCeEEEEecC
Q 017553 351 TILSCCEDGAIWRWDAI 367 (369)
Q Consensus 351 ~l~s~~~dg~i~vw~~~ 367 (369)
++.||++||.+.+|...
T Consensus 330 ~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 330 VLYTGGEDGLLQAWKVE 346 (376)
T ss_pred eeeccCCCceEEEEecC
Confidence 99999999999999853
No 153
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=6.1e-25 Score=165.05 Aligned_cols=257 Identities=17% Similarity=0.302 Sum_probs=194.2
Q ss_pred ccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCC
Q 017553 30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING 108 (369)
Q Consensus 30 ~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg 108 (369)
.+|.-.|..+.|-|-| ..+|.+++-|. ++|||..+.+....+. .++.|+.-+|++-.-...++++|..+-
T Consensus 98 ~~Hky~iss~~WyP~D---tGmFtssSFDhtlKVWDtnTlQ~a~~F~------me~~VYshamSp~a~sHcLiA~gtr~~ 168 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPID---TGMFTSSSFDHTLKVWDTNTLQEAVDFK------MEGKVYSHAMSPMAMSHCLIAAGTRDV 168 (397)
T ss_pred ccceeeeeeeEEeeec---CceeecccccceEEEeecccceeeEEee------cCceeehhhcChhhhcceEEEEecCCC
Confidence 4688889999999964 67899999999 9999988877766665 677899999985444344788899999
Q ss_pred eEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCC-cEEEEee-----------ccCCCCCc
Q 017553 109 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG-ICILIFA-----------GAGGHRNE 176 (369)
Q Consensus 109 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~-----------~~~~~~~~ 176 (369)
.|++-|+.+|...+++.+|.+.|.++.|+|...-.|++|+.||.|++||++.- .+...+. ....|.+.
T Consensus 169 ~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gk 248 (397)
T KOG4283|consen 169 QVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGK 248 (397)
T ss_pred cEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccce
Confidence 99999999999999999999999999999966678999999999999999854 2333322 22368899
Q ss_pred EEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeeeCcEEEEe
Q 017553 177 VLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSK 256 (369)
Q Consensus 177 v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~ 256 (369)
|..++|.. ++.++++++.|..+++|+..++......-.... ......+..| +. +.+...++--
T Consensus 249 vngla~tS-d~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~-----------~n~~~~~~~~---~~--~~~s~vfv~~ 311 (397)
T KOG4283|consen 249 VNGLAWTS-DARYLASCGTDDRIRVWNMESGRNTLREFGPII-----------HNQTTSFAVH---IQ--SMDSDVFVLF 311 (397)
T ss_pred eeeeeecc-cchhhhhccCccceEEeecccCccccccccccc-----------ccccccceEE---Ee--ecccceEEEE
Confidence 99999998 999999999999999999998654332211100 0000001111 11 1113334444
Q ss_pred ecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCC
Q 017553 257 SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 323 (369)
Q Consensus 257 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~ 323 (369)
-.++.+.++++-.+. .++.+..|...+.+.++.|+-+ ...+|..|+.|..|-..-.
T Consensus 312 p~~~~lall~~~sgs---------~ir~l~~h~k~i~c~~~~~~fq--~~~tg~~d~ni~~w~p~l~ 367 (397)
T KOG4283|consen 312 PNDGSLALLNLLEGS---------FVRRLSTHLKRINCAAYRPDFE--QCFTGDMNGNIYMWSPALK 367 (397)
T ss_pred ecCCeEEEEEccCce---------EEEeeecccceeeEEeecCchh--hhhccccCCcccccccccc
Confidence 455788888887766 5777777778889999999886 7889999999999987433
No 154
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.94 E-value=3.6e-24 Score=162.90 Aligned_cols=282 Identities=14% Similarity=0.214 Sum_probs=206.3
Q ss_pred eEEEEEeeccCCCccEEEEecCCc-EEEEEecCCc--------eeEEEeeeccCCcccceeEEEee-----ecCCCccEE
Q 017553 36 LYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG--------VIAALQSYVDEDKEESFYTVSWA-----CNVDGIPFL 101 (369)
Q Consensus 36 v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~--------~~~~~~~~~~~~~~~~v~~~~~~-----~~~~g~~~l 101 (369)
...+.|+| ||..+.+-+.|. +.+|++.... ..........-.....|+..+|- ..|+.. ++
T Consensus 52 ~kgckWSP----DGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~-l~ 126 (406)
T KOG2919|consen 52 LKGCKWSP----DGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTN-LF 126 (406)
T ss_pred hccceeCC----CCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccc-ee
Confidence 45678999 689999888887 9999985211 11111111111345678888876 235555 89
Q ss_pred EEeecCCeEEEEEcCCccccceeec--ccc---ceEEEEecCCCCceEEEEeCCCcEEEEEc-cCCcEEEEeec----cC
Q 017553 102 VAGGINGIIRVIDVSNEKLHKSFVG--HGD---SINEIRTQPLKPSLVVSASKDESVRLWNV-QTGICILIFAG----AG 171 (369)
Q Consensus 102 ~~~~~dg~i~vwd~~~~~~~~~~~~--~~~---~v~~~~~~~~~~~~l~s~~~dg~i~vwd~-~~~~~~~~~~~----~~ 171 (369)
++.+.+.-|++||.-+|+....+++ |.+ ...+++|+| ++..|++|-. ..|+++|+ +.|+....... ..
T Consensus 127 a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~-DGeqlfaGyk-rcirvFdt~RpGr~c~vy~t~~~~k~ 204 (406)
T KOG2919|consen 127 AVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSP-DGEQLFAGYK-RCIRVFDTSRPGRDCPVYTTVTKGKF 204 (406)
T ss_pred eeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecC-CCCeEeeccc-ceEEEeeccCCCCCCcchhhhhcccc
Confidence 9999999999999999998877764 333 456899999 8888887655 79999999 55543222111 12
Q ss_pred CCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--
Q 017553 172 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-- 249 (369)
Q Consensus 172 ~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-- 249 (369)
+..+-+.+++|+|.+...++.++....+-||.-.. ..|+..+.+|.+.|+.+.|.
T Consensus 205 gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~-----------------------~~pl~llggh~gGvThL~~~ed 261 (406)
T KOG2919|consen 205 GQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG-----------------------RRPLQLLGGHGGGVTHLQWCED 261 (406)
T ss_pred cccceeeeeeccCCCCcceeeecccceeeeEecCC-----------------------CCceeeecccCCCeeeEEeccC
Confidence 45778999999998888999999999988888776 56888889999999999997
Q ss_pred CcEEEEeec-CCeEEEecCCCCCCCCCCCccceeeeccCCCC-CeeEEEEeecCCccEEEEecCCCeEEEEEccCCCcee
Q 017553 250 GDFILSKSV-DNEIVLWEPKMKEQSPGEGTADILQKYPVPEC-DIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVL 327 (369)
Q Consensus 250 ~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 327 (369)
|+.|++|.. |..|..||++.... ++..+..|.. .-..|-|.-+....+|++|+.||.|++||+++.- ..
T Consensus 262 Gn~lfsGaRk~dkIl~WDiR~~~~--------pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~g-n~ 332 (406)
T KOG2919|consen 262 GNKLFSGARKDDKILCWDIRYSRD--------PVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLG-NE 332 (406)
T ss_pred cCeecccccCCCeEEEEeehhccc--------hhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCC-Cc
Confidence 888888876 77899999998654 4444444433 3334566655555699999999999999999832 12
Q ss_pred EEEeecCCCccceEEEEecCCCCEEEEeecC
Q 017553 328 IARLSHAQSKSPIRQTAMSYDGSTILSCCED 358 (369)
Q Consensus 328 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 358 (369)
...+. .+...++.++++|--.++|+++..
T Consensus 333 ~sv~~--~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 333 VSVTG--NYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ccccc--cccccccceecCcccceeeeccCc
Confidence 22333 566789999999998888888754
No 155
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=1.6e-25 Score=179.81 Aligned_cols=237 Identities=15% Similarity=0.219 Sum_probs=196.0
Q ss_pred CCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeE
Q 017553 32 GKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGII 110 (369)
Q Consensus 32 h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i 110 (369)
...-|.++...| +|+.|++|+.-. +.|||+.........+. .......+.++.+ ||.+ +.+++..||.|
T Consensus 464 rdnyiRSckL~p----dgrtLivGGeastlsiWDLAapTprikael---tssapaCyALa~s--pDak-vcFsccsdGnI 533 (705)
T KOG0639|consen 464 RDNYIRSCKLLP----DGRTLIVGGEASTLSIWDLAAPTPRIKAEL---TSSAPACYALAIS--PDAK-VCFSCCSDGNI 533 (705)
T ss_pred cccceeeeEecC----CCceEEeccccceeeeeeccCCCcchhhhc---CCcchhhhhhhcC--Cccc-eeeeeccCCcE
Confidence 456799999999 699999999876 99999876543222221 0122345556555 9998 99999999999
Q ss_pred EEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEE
Q 017553 111 RVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRI 190 (369)
Q Consensus 111 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 190 (369)
.|||+.+...++.|++|++.+.||..++ ++..|-+|+-|++||-||+++++.+.... ....|.++-++| .+.++
T Consensus 534 ~vwDLhnq~~VrqfqGhtDGascIdis~-dGtklWTGGlDntvRcWDlregrqlqqhd----F~SQIfSLg~cP-~~dWl 607 (705)
T KOG0639|consen 534 AVWDLHNQTLVRQFQGHTDGASCIDISK-DGTKLWTGGLDNTVRCWDLREGRQLQQHD----FSSQIFSLGYCP-TGDWL 607 (705)
T ss_pred EEEEcccceeeecccCCCCCceeEEecC-CCceeecCCCccceeehhhhhhhhhhhhh----hhhhheecccCC-Cccce
Confidence 9999999999999999999999999999 99999999999999999999998877654 678899999999 88999
Q ss_pred EEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEEEecCC
Q 017553 191 ASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPK 268 (369)
Q Consensus 191 ~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~ 268 (369)
+.|-.++.+.+...... ....+..|...|.++.|. |+++++.+.|+.+..|...
T Consensus 608 avGMens~vevlh~skp------------------------~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtP 663 (705)
T KOG0639|consen 608 AVGMENSNVEVLHTSKP------------------------EKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP 663 (705)
T ss_pred eeecccCcEEEEecCCc------------------------cceeecccccEEEEEEecccCceeeecCchhhhhhccCc
Confidence 99999999988877662 345667799999999996 9999999999999999987
Q ss_pred CCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEc
Q 017553 269 MKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL 320 (369)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~ 320 (369)
-+.. +...+ ....|.++.+|.|.+ ++++|+.|....+|.+
T Consensus 664 yGas---------iFqsk-E~SsVlsCDIS~ddk--yIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 664 YGAS---------IFQSK-ESSSVLSCDISFDDK--YIVTGSGDKKATVYEV 703 (705)
T ss_pred cccc---------eeecc-ccCcceeeeeccCce--EEEecCCCcceEEEEE
Confidence 6652 22222 236789999999996 9999999988888865
No 156
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.94 E-value=1.9e-23 Score=156.74 Aligned_cols=305 Identities=15% Similarity=0.261 Sum_probs=210.7
Q ss_pred cccccceeeeeecccCCcCeEEEEEeeccCCCccEEEEecC-----CcEEEEEec--CCceeEEEeeeccCCcccceeEE
Q 017553 17 PSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGG-----NRVTVYQCL--EGGVIAALQSYVDEDKEESFYTV 89 (369)
Q Consensus 17 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~-----~~v~iw~~~--~~~~~~~~~~~~~~~~~~~v~~~ 89 (369)
+.....-+....+..+ -+++++.|+.. +..+.+||.|+- ++|.|..+. +++.+..-. -.|.-+++.+
T Consensus 29 ~~~~~r~~eiy~Y~ap-~~lya~~Ws~~-~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~----fd~~YP~tK~ 102 (364)
T KOG0290|consen 29 PEGNPRRKEIYTYNAP-WPLYAMNWSVR-PDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDAN----FDHPYPVTKL 102 (364)
T ss_pred cccCcccceEEEecCC-CceeeeccccC-CCcceeEEEeeeccccCCeeEEEEEccCCCceeccCC----CCCCCCccce
Confidence 3333344444444433 46899999953 223678888873 346666554 333322222 2578889999
Q ss_pred EeeecCCCcc--EEEEeecCCeEEEEEcCCcc----cccee-----eccccceEEEEecCCCCceEEEEeCCCcEEEEEc
Q 017553 90 SWACNVDGIP--FLVAGGINGIIRVIDVSNEK----LHKSF-----VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 158 (369)
Q Consensus 90 ~~~~~~~g~~--~l~~~~~dg~i~vwd~~~~~----~~~~~-----~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~ 158 (369)
.|.+++.|.+ +||+.+ ..+|+|.+...+ +...+ ..+..++++..|+..+.++|.+.+-|-+..|||+
T Consensus 103 ~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdi 180 (364)
T KOG0290|consen 103 MWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDI 180 (364)
T ss_pred EecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEE
Confidence 9996665431 344443 379999987421 11111 2356799999999989999999999999999999
Q ss_pred cCCcE---EEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceee
Q 017553 159 QTGIC---ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI 235 (369)
Q Consensus 159 ~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (369)
+++.. ...+- +|..+|..++|...+.++|++.+.||.+|+||+|..+. ...+..
T Consensus 181 e~~~~~~vkTQLI---AHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH--------------------STIIYE 237 (364)
T KOG0290|consen 181 ETGVSGTVKTQLI---AHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH--------------------STIIYE 237 (364)
T ss_pred eeccccceeeEEE---ecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc--------------------ceEEec
Confidence 98733 22233 69999999999986678999999999999999998321 011112
Q ss_pred eccCCCceeeeeee---CcEEEEeecCC-eEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecC
Q 017553 236 ASVHSNYVDCNRWL---GDFILSKSVDN-EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR 311 (369)
Q Consensus 236 ~~~~~~~v~~~~~~---~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~ 311 (369)
-.....+...++|+ .+++++-..|. .|.|.|++.... ++.++..|.+.|+.++|.|..+ ..+++++.
T Consensus 238 ~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t--------pva~L~~H~a~VNgIaWaPhS~-~hictaGD 308 (364)
T KOG0290|consen 238 DPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT--------PVARLRNHQASVNGIAWAPHSS-SHICTAGD 308 (364)
T ss_pred CCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc--------ceehhhcCcccccceEecCCCC-ceeeecCC
Confidence 22225567778886 56787766654 599999998653 7899999999999999999987 58999999
Q ss_pred CCeEEEEEccCCCceeE--EEeecCCCccceEEEEecC-CCCEEEEeecCCeEEE
Q 017553 312 EGKIFVWELQSSPPVLI--ARLSHAQSKSPIRQTAMSY-DGSTILSCCEDGAIWR 363 (369)
Q Consensus 312 dg~i~i~d~~~~~~~~~--~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~v 363 (369)
|.++.+||+........ ..+.. .-.+.|+.+.|++ .+..|+.+.. +.+.+
T Consensus 309 D~qaliWDl~q~~~~~~~dPilay-~a~~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 309 DCQALIWDLQQMPRENGEDPILAY-TAGGEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred cceEEEEecccccccCCCCchhhh-hccceeeeeeecccCCCEEEEEec-CeeeE
Confidence 99999999986532110 01111 2347899999996 4567877754 44444
No 157
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.93 E-value=2.8e-24 Score=160.99 Aligned_cols=263 Identities=17% Similarity=0.230 Sum_probs=200.9
Q ss_pred eeecccCCcCeEEEEEeeccCCCccEEEEecCC--------cEEEEEecCCcee------EEEeeeccCCcccceeEEEe
Q 017553 26 TNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGN--------RVTVYQCLEGGVI------AALQSYVDEDKEESFYTVSW 91 (369)
Q Consensus 26 ~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~--------~v~iw~~~~~~~~------~~~~~~~~~~~~~~v~~~~~ 91 (369)
.+.|..|.+.|+.++-+|. +..+|+++..+ +..||.+.+.... ..+... +..+-+.|.|+.|
T Consensus 56 skvf~h~agEvw~las~P~---d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L-dteavg~i~cvew 131 (370)
T KOG1007|consen 56 SKVFFHHAGEVWDLASSPF---DQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL-DTEAVGKINCVEW 131 (370)
T ss_pred hhhhhcCCcceehhhcCCC---CCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC-CHHHhCceeeEEE
Confidence 3456778899999999996 46788887652 2779998643221 112211 1134458999999
Q ss_pred eecCCCccEEEEeecCCeEEEEEcCCccc-cceee-----ccccceEEEEecC-CCCceEEEEeCCCcEEEEEccCCcEE
Q 017553 92 ACNVDGIPFLVAGGINGIIRVIDVSNEKL-HKSFV-----GHGDSINEIRTQP-LKPSLVVSASKDESVRLWNVQTGICI 164 (369)
Q Consensus 92 ~~~~~g~~~l~~~~~dg~i~vwd~~~~~~-~~~~~-----~~~~~v~~~~~~~-~~~~~l~s~~~dg~i~vwd~~~~~~~ 164 (369)
. |++. .+++-. |..|.+|++..+.. +..+. +|....++-+|+| .+++.+++. .|++++.||+++..+.
T Consensus 132 ~--Pns~-klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~ 206 (370)
T KOG1007|consen 132 E--PNSD-KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKN 206 (370)
T ss_pred c--CCCC-eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhh
Confidence 9 7887 666665 77899999987765 44433 3566788899999 566666664 5699999999998888
Q ss_pred EEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCcee
Q 017553 165 LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD 244 (369)
Q Consensus 165 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 244 (369)
..+.. +|...|..+.|+|....+|++|+.||.|++||.|.. ..|+..+..|...|.
T Consensus 207 ~sI~d--AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t----------------------k~pv~el~~HsHWvW 262 (370)
T KOG1007|consen 207 NSIED--AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT----------------------KFPVQELPGHSHWVW 262 (370)
T ss_pred cchhh--hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC----------------------CccccccCCCceEEE
Confidence 87776 788999999999977788999999999999999983 568889999999999
Q ss_pred eeeee---CcEEEEeecCCeEEEecCCCCCCCC--------------------CCCccceeeeccCCCCCeeEEEEeecC
Q 017553 245 CNRWL---GDFILSKSVDNEIVLWEPKMKEQSP--------------------GEGTADILQKYPVPECDIWFIKFSCDF 301 (369)
Q Consensus 245 ~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~--------------------~~~~~~~~~~~~~~~~~i~~~~~s~~~ 301 (369)
++.|+ .+++++++.|..|.+|....-.... ..-....+.++..|+..|.+++||.-.
T Consensus 263 ~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsad 342 (370)
T KOG1007|consen 263 AVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSAD 342 (370)
T ss_pred EEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCC
Confidence 99998 7799999999999999765432100 001123456788899999999999877
Q ss_pred CccEEEEecCCCeEEEEEccC
Q 017553 302 HYNAAAIGNREGKIFVWELQS 322 (369)
Q Consensus 302 ~~~~l~~~~~dg~i~i~d~~~ 322 (369)
+ -.+|+-+.||++.|=.+..
T Consensus 343 P-WiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 343 P-WIFASLSYDGRVIISSVPR 362 (370)
T ss_pred C-eeEEEeccCceEEeecCCh
Confidence 6 4788899999999876654
No 158
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.8e-25 Score=196.06 Aligned_cols=261 Identities=15% Similarity=0.245 Sum_probs=208.9
Q ss_pred eeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecC---CceeEEEeeeccCCcccceeEEEeeecCCCcc
Q 017553 24 RVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLE---GGVIAALQSYVDEDKEESFYTVSWACNVDGIP 99 (369)
Q Consensus 24 ~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~ 99 (369)
+++..+. -...-+.++|.+.......++|.|.+|| |.+||... +.....+... ..|.+.|..+.|+ +...+
T Consensus 56 k~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~--~~h~G~V~gLDfN--~~q~n 130 (1049)
T KOG0307|consen 56 KPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATK--SKHTGPVLGLDFN--PFQGN 130 (1049)
T ss_pred ccccccc-ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhh--cccCCceeeeecc--ccCCc
Confidence 4444432 3456789999985422223688888999 99999765 3333333332 2689999998887 76666
Q ss_pred EEEEeecCCeEEEEEcCCccccceee--ccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCC--C
Q 017553 100 FLVAGGINGIIRVIDVSNEKLHKSFV--GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR--N 175 (369)
Q Consensus 100 ~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~--~ 175 (369)
+|++|+.||.|.|||+++.+.-.... ...+.|.+++|+....++|++++.+|.+.|||++..+.+..+.. +. .
T Consensus 131 lLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~---~~~~~ 207 (1049)
T KOG0307|consen 131 LLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSD---TPGRM 207 (1049)
T ss_pred eeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccccccc---CCCcc
Confidence 99999999999999998765544442 24578999999987788999999999999999999888877762 33 3
Q ss_pred cEEEEEecCCCceEEEEEeeCC---cEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee---
Q 017553 176 EVLSVDFHPSDIYRIASCGMDN---TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--- 249 (369)
Q Consensus 176 ~v~~~~~~~~~~~~l~~~~~d~---~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--- 249 (369)
.+..++|+|++...+++++.|. .|.+||+|.. ..++..+..|...|.++.|+
T Consensus 208 ~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a----------------------ssP~k~~~~H~~GilslsWc~~D 265 (1049)
T KOG0307|consen 208 HCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA----------------------SSPLKILEGHQRGILSLSWCPQD 265 (1049)
T ss_pred ceeeeeeCCCCceeeeeecCCCCCceeEeeccccc----------------------CCchhhhcccccceeeeccCCCC
Confidence 4789999998788888887765 6999999972 35677889999999999998
Q ss_pred CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCC
Q 017553 250 GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP 324 (369)
Q Consensus 250 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~ 324 (369)
..++++++.|+.|.+|+.++++ .+..+......+..+.|+|... .++++++-||.|.||.+....
T Consensus 266 ~~lllSsgkD~~ii~wN~~tgE---------vl~~~p~~~nW~fdv~w~pr~P-~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 266 PRLLLSSGKDNRIICWNPNTGE---------VLGELPAQGNWCFDVQWCPRNP-SVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred chhhhcccCCCCeeEecCCCce---------EeeecCCCCcceeeeeecCCCc-chhhhheeccceeeeeeecCC
Confidence 4699999999999999999987 7888888888999999999886 588999999999999998764
No 159
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.93 E-value=1.8e-22 Score=167.09 Aligned_cols=273 Identities=14% Similarity=0.132 Sum_probs=179.2
Q ss_pred ceeeeeecccCCcCeEEEEEeeccCCCccEE-EEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCcc
Q 017553 22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVF-ATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIP 99 (369)
Q Consensus 22 ~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~l-a~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~ 99 (369)
..+....+..+. .+.+++|+| +++.+ ++++.++ |++||..+++....+.. + ..+..++|+ |+++.
T Consensus 20 t~~~~~~~~~~~-~~~~l~~~~----dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-----~-~~~~~~~~~--~~g~~ 86 (300)
T TIGR03866 20 TLEVTRTFPVGQ-RPRGITLSK----DGKLLYVCASDSDTIQVIDLATGEVIGTLPS-----G-PDPELFALH--PNGKI 86 (300)
T ss_pred CCceEEEEECCC-CCCceEECC----CCCEEEEEECCCCeEEEEECCCCcEEEeccC-----C-CCccEEEEC--CCCCE
Confidence 344555666554 467899999 56655 5666666 99999988877665542 1 223445665 99983
Q ss_pred EEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCC-cEEEEEccCCcEEEEeeccCCCCCcEE
Q 017553 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDE-SVRLWNVQTGICILIFAGAGGHRNEVL 178 (369)
Q Consensus 100 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~v~ 178 (369)
+++++..++.|++||+.+.+.+..+.. ...+.+++|+| ++.++++++.++ .+.+||.++++....+. ....+.
T Consensus 87 l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~----~~~~~~ 160 (300)
T TIGR03866 87 LYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVL----VDQRPR 160 (300)
T ss_pred EEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEE----cCCCcc
Confidence 444556789999999998877766653 34468899999 888888888765 56778998887766554 334557
Q ss_pred EEEecCCCceEE-EEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEE-
Q 017553 179 SVDFHPSDIYRI-ASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFIL- 254 (369)
Q Consensus 179 ~~~~~~~~~~~l-~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~- 254 (369)
.++|+| ++..+ +++..++.|++||+++++........... ..........+.|+ +++++
T Consensus 161 ~~~~s~-dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~----------------~~~~~~~~~~i~~s~dg~~~~~ 223 (300)
T TIGR03866 161 FAEFTA-DGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPG----------------VHPEAVQPVGIKLTKDGKTAFV 223 (300)
T ss_pred EEEECC-CCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccc----------------cccccCCccceEECCCCCEEEE
Confidence 899999 66666 45556899999999985432211110000 00001112245554 66544
Q ss_pred EeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEe-cCCCeEEEEEccCCCceeEEEeec
Q 017553 255 SKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG-NREGKIFVWELQSSPPVLIARLSH 333 (369)
Q Consensus 255 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~ 333 (369)
+.+.++.+.+||+++.+ .+.... +...+.+++|+|+++ +|+++ ..+|.|.+||+.+++ .+..++.
T Consensus 224 ~~~~~~~i~v~d~~~~~---------~~~~~~-~~~~~~~~~~~~~g~--~l~~~~~~~~~i~v~d~~~~~--~~~~~~~ 289 (300)
T TIGR03866 224 ALGPANRVAVVDAKTYE---------VLDYLL-VGQRVWQLAFTPDEK--YLLTTNGVSNDVSVIDVAALK--VIKSIKV 289 (300)
T ss_pred EcCCCCeEEEEECCCCc---------EEEEEE-eCCCcceEEECCCCC--EEEEEcCCCCeEEEEECCCCc--EEEEEEc
Confidence 44557789999998765 222222 234688999999997 66654 568999999999984 4455542
Q ss_pred CCCccceEEEEecC
Q 017553 334 AQSKSPIRQTAMSY 347 (369)
Q Consensus 334 ~~~~~~v~~~~~s~ 347 (369)
. ...+.++++|
T Consensus 290 ~---~~~~~~~~~~ 300 (300)
T TIGR03866 290 G---RLPWGVVVRP 300 (300)
T ss_pred c---cccceeEeCC
Confidence 2 4457787765
No 160
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.93 E-value=3.7e-24 Score=169.93 Aligned_cols=253 Identities=12% Similarity=0.097 Sum_probs=192.6
Q ss_pred CcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCc----cccceeeccccceEEEEecCCCCceEEEEeCCCcEEEE
Q 017553 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE----KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLW 156 (369)
Q Consensus 81 ~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vw 156 (369)
.+.+.|++++|.+..+-+ ++++|...|+|-+||+.+. ..+..+..|..+|.+|.|+|.+...+++.+.||+|++-
T Consensus 184 v~~~Rit~l~fHPt~~~~-lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~ 262 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTENRK-LVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQ 262 (498)
T ss_pred ecccceEEEEecccCcce-EEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeee
Confidence 477899999999665555 9999999999999999532 23566778999999999999888999999999999999
Q ss_pred EccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeee
Q 017553 157 NVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA 236 (369)
Q Consensus 157 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (369)
|++.+..-..+.. ......+..+.|+. +...++.+..=|...+||+++.. .....+
T Consensus 263 D~~~~i~e~v~s~-~~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~----------------------s~~~~~ 318 (498)
T KOG4328|consen 263 DFEGNISEEVLSL-DTDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDG----------------------SEYENL 318 (498)
T ss_pred eecchhhHHHhhc-CccceeeeeccccC-CCccEEEeecccceEEEEeecCC----------------------ccchhh
Confidence 9987643322220 02445677888987 55566666666799999999942 234455
Q ss_pred ccCCCceeeeeee---CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCC
Q 017553 237 SVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG 313 (369)
Q Consensus 237 ~~~~~~v~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg 313 (369)
..|...|..++++ ..++++++.|++.+|||++....... ++-..-.|...|.++.|||.+. .|++.+.|.
T Consensus 319 ~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s-----p~lst~~HrrsV~sAyFSPs~g--tl~TT~~D~ 391 (498)
T KOG4328|consen 319 RLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS-----PFLSTLPHRRSVNSAYFSPSGG--TLLTTCQDN 391 (498)
T ss_pred hhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC-----cceecccccceeeeeEEcCCCC--ceEeeccCC
Confidence 6788899999997 67999999999999999998764332 1333345778899999999997 599999999
Q ss_pred eEEEEEcc----CCCceeEEEeecCCCc---cceEEEEecCCCCEEEEeecCCeEEEEecC
Q 017553 314 KIFVWELQ----SSPPVLIARLSHAQSK---SPIRQTAMSYDGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 314 ~i~i~d~~----~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 367 (369)
.|+|||.. .. .....+.|.... -......|.|+..++++|-.-..|-|+|-+
T Consensus 392 ~IRv~dss~~sa~~--~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~ 450 (498)
T KOG4328|consen 392 EIRVFDSSCISAKD--EPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGN 450 (498)
T ss_pred ceEEeecccccccC--CccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCC
Confidence 99999984 22 233333332111 134467899999999999988888888743
No 161
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=5.7e-24 Score=169.05 Aligned_cols=253 Identities=17% Similarity=0.241 Sum_probs=194.5
Q ss_pred eeeecccCCcCeEEEEEeeccCCCcc-EEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEE
Q 017553 25 VTNKLQEGKRPLYAVVFNFIDSRYFN-VFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLV 102 (369)
Q Consensus 25 ~~~~~~~h~~~v~~~~~s~~~~~~~~-~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~ 102 (369)
.++.+.--.-+|.+.+|.| +|. .+++++... ++.||+.+.+..+.-+... ..+..+....++ |+++ +|+
T Consensus 249 ~lqS~~l~~fPi~~a~f~p----~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g--~e~~~~e~FeVS--hd~~-fia 319 (514)
T KOG2055|consen 249 KLQSIHLEKFPIQKAEFAP----NGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYG--VEEKSMERFEVS--HDSN-FIA 319 (514)
T ss_pred hheeeeeccCccceeeecC----CCceEEEecccceEEEEeeccccccccccCCCC--cccchhheeEec--CCCC-eEE
Confidence 3344444567899999999 577 888888887 9999998876544333221 113344444455 9998 999
Q ss_pred EeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcE--EEE
Q 017553 103 AGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEV--LSV 180 (369)
Q Consensus 103 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v--~~~ 180 (369)
..+..|.|.+....+++.+.+++ -.+.|..++|+. ++..|++++.+|.|.+||++...+++.+. ..+.| +++
T Consensus 320 ~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~----D~G~v~gts~ 393 (514)
T KOG2055|consen 320 IAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFV----DDGSVHGTSL 393 (514)
T ss_pred EcccCceEEeehhhhhhhhheee-eccEEeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEe----ecCccceeee
Confidence 99999999999999999999998 578899999998 78888888889999999999999999987 44444 466
Q ss_pred EecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeec
Q 017553 181 DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV 258 (369)
Q Consensus 181 ~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~ 258 (369)
+.++ ++.+|++|+..|.|.|||..+... .....|+..+..-...|+++.|+ .+.|+.++.
T Consensus 394 ~~S~-ng~ylA~GS~~GiVNIYd~~s~~~-----------------s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~ 455 (514)
T KOG2055|consen 394 CISL-NGSYLATGSDSGIVNIYDGNSCFA-----------------STNPKPIKTVDNLTTAITSLQFNHDAQILAIASR 455 (514)
T ss_pred eecC-CCceEEeccCcceEEEeccchhhc-----------------cCCCCchhhhhhhheeeeeeeeCcchhhhhhhhh
Confidence 7777 888999999999999999876211 11134666667777889999998 556666554
Q ss_pred --CCeEEEecCCCCCCCCCCCccceeeeccC---CCCCeeEEEEeecCCccEEEEecCCCeEEEEEcc
Q 017553 259 --DNEIVLWEPKMKEQSPGEGTADILQKYPV---PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ 321 (369)
Q Consensus 259 --d~~i~i~d~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~ 321 (369)
+..+++..+.+.. ....++. .-+.+++++|||.+. +||.|..+|++.+|.+.
T Consensus 456 ~~knalrLVHvPS~T---------VFsNfP~~n~~vg~vtc~aFSP~sG--~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 456 VKKNALRLVHVPSCT---------VFSNFPTSNTKVGHVTCMAFSPNSG--YLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ccccceEEEecccee---------eeccCCCCCCcccceEEEEecCCCc--eEEeecCCCceeeEeec
Confidence 6678888887654 3333333 235789999999886 99999999999999875
No 162
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.93 E-value=3.1e-24 Score=160.74 Aligned_cols=238 Identities=18% Similarity=0.253 Sum_probs=182.0
Q ss_pred ceeeeeecc-cCCcCeEEEEEeeccCCCccEEEEecCCcEEEEEecCCce-eEEEeeeccCCcccceeEEEeeecCCCcc
Q 017553 22 EYRVTNKLQ-EGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGV-IAALQSYVDEDKEESFYTVSWACNVDGIP 99 (369)
Q Consensus 22 ~~~~~~~~~-~h~~~v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~g~~ 99 (369)
+++++..|. .+-+.|.|+.|.| ++..+|+-.++.|.+|++..+.. ...+.......+....++-+|++..+|.
T Consensus 111 tlE~v~~Ldteavg~i~cvew~P----ns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn- 185 (370)
T KOG1007|consen 111 TLECVASLDTEAVGKINCVEWEP----NSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN- 185 (370)
T ss_pred hhhHhhcCCHHHhCceeeEEEcC----CCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccc-
Confidence 367777775 6667999999999 57889988877899999988776 5555554444567788889999888998
Q ss_pred EEEEeecCCeEEEEEcCCccccceee-ccccceEEEEecCCCCceEEEEeCCCcEEEEEccCC-cEEEEeeccCCCCCcE
Q 017553 100 FLVAGGINGIIRVIDVSNEKLHKSFV-GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG-ICILIFAGAGGHRNEV 177 (369)
Q Consensus 100 ~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~v 177 (369)
.+++. .|++++.||+++.++...+. +|...|..+.|+|+...+|++|+.||.|++||.+.- .++..+. +|...|
T Consensus 186 qv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~---~HsHWv 261 (370)
T KOG1007|consen 186 QVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP---GHSHWV 261 (370)
T ss_pred eEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC---CCceEE
Confidence 55555 47899999999988777765 688899999999977779999999999999999854 4566666 899999
Q ss_pred EEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccC--CCCCCCC----ceeecceeeeccCCCceeeeeee--
Q 017553 178 LSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTD--LPSKFPT----KYVQFPVFIASVHSNYVDCNRWL-- 249 (369)
Q Consensus 178 ~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~-- 249 (369)
.++.|+|...+++++++.|..|.+|....-.......+..+. .+..... ......+..+..|.+.|.+++|+
T Consensus 262 W~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsa 341 (370)
T KOG1007|consen 262 WAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSA 341 (370)
T ss_pred EEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccC
Confidence 999999988899999999999999988763322211111111 1111001 11223455788899999999998
Q ss_pred -CcEEEEeecCCeEEEecCC
Q 017553 250 -GDFILSKSVDNEIVLWEPK 268 (369)
Q Consensus 250 -~~~l~~~~~d~~i~i~d~~ 268 (369)
+=.+++-+.||++.|=.+.
T Consensus 342 dPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 342 DPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred CCeeEEEeccCceEEeecCC
Confidence 4488999999999886654
No 163
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.4e-23 Score=163.96 Aligned_cols=302 Identities=13% Similarity=0.147 Sum_probs=215.9
Q ss_pred eeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEE--EeeeccCCcccceeEEEeeecCCCccEEE
Q 017553 26 TNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAA--LQSYVDEDKEESFYTVSWACNVDGIPFLV 102 (369)
Q Consensus 26 ~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~g~~~l~ 102 (369)
.+-+.+|.+.|+++.||. ++++||+|++|. +++|++...-..++ .-+.....|...|+|++|. ..++ +|+
T Consensus 49 qKD~~~H~GCiNAlqFS~----N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~--~~N~-~~~ 121 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSH----NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFD--LENR-FLY 121 (609)
T ss_pred hhhhhhhccccceeeecc----CCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEc--cCCe-eEe
Confidence 344579999999999998 689999999999 99999864322111 0112233678899999997 6666 999
Q ss_pred EeecCCeEEEEEcCCccccceeec--cccceEEEEecCCCCceEEEEeCCCcEEEEEccCCc-EEEEeeccCCCCCcEEE
Q 017553 103 AGGINGIIRVIDVSNEKLHKSFVG--HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI-CILIFAGAGGHRNEVLS 179 (369)
Q Consensus 103 ~~~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~v~~ 179 (369)
+|..+++|.+-|+++.+.+..+.. ..+.|..+..+| -.+.|++.+.++.|.+||.+... .+..+. +.........
T Consensus 122 SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~-~AN~~~~F~t 199 (609)
T KOG4227|consen 122 SGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVL-PANSGKNFYT 199 (609)
T ss_pred cCCCcceeEeeecccceeeeeecccCcccceeecccCC-CCceEEEEecCceEEEEeccCCCCCCceee-ecCCCcccee
Confidence 999999999999999888777652 234899999999 57899999999999999998765 222221 1135567788
Q ss_pred EEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEee
Q 017553 180 VDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS 257 (369)
Q Consensus 180 ~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~ 257 (369)
+.|+|....+|++.+..+-+-+||++.....+-.-- -...++.....-..+.|+ |+.+++--
T Consensus 200 ~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~----------------~~~~L~~~~~~~M~~~~~~~G~Q~msiR 263 (609)
T KOG4227|consen 200 AEFHPETPALILVNSETGGPNVFDRRMQARPVYQRS----------------MFKGLPQENTEWMGSLWSPSGNQFMSIR 263 (609)
T ss_pred eeecCCCceeEEeccccCCCCceeeccccchHHhhh----------------ccccCcccchhhhheeeCCCCCeehhhh
Confidence 999998899999999999999999998432111000 000111111122445554 77777766
Q ss_pred cCCeEEEecCCCCCCCCCCCccceeeecc-C-----CCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCc------
Q 017553 258 VDNEIVLWEPKMKEQSPGEGTADILQKYP-V-----PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP------ 325 (369)
Q Consensus 258 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~-~-----~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~------ 325 (369)
....-.+||+-+... .+..+. . ..+.+.+++|..+. -+++|+.+-.|++|.+.....
T Consensus 264 R~~~P~~~D~~S~R~--------~V~k~D~N~~GY~N~~T~KS~~F~~D~---~v~tGSD~~~i~~WklP~~~ds~G~~~ 332 (609)
T KOG4227|consen 264 RGKCPLYFDFISQRC--------FVLKSDHNPNGYCNIKTIKSMTFIDDY---TVATGSDHWGIHIWKLPRANDSYGFTQ 332 (609)
T ss_pred ccCCCEEeeeecccc--------eeEeccCCCCcceeeeeeeeeeeecce---eeeccCcccceEEEecCCCccccCccc
Confidence 666677788776543 222222 1 12456778888775 599999999999998753210
Q ss_pred ---------------eeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEe
Q 017553 326 ---------------VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 365 (369)
Q Consensus 326 ---------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~ 365 (369)
..+..+. +|..-++.+.|+|...+|++.+-...++||.
T Consensus 333 IG~~~~~~~~~~~i~~~~~VLr--GHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 333 IGHDEEEMPSEIFIEKELTVLR--GHRSVPNQVRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred cCcchhhCchhheecceeEEEe--cccccccceeecCCcceEeccchhhheeccc
Confidence 1122333 8999999999999999999999999999996
No 164
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.9e-24 Score=173.01 Aligned_cols=320 Identities=15% Similarity=0.228 Sum_probs=238.4
Q ss_pred cceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCcc
Q 017553 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIP 99 (369)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~ 99 (369)
.++.+...|..|.+.|+.|.|+. .|..|+++++|. |.+||+..+.....+.. .|...|....|.+..+.+
T Consensus 130 qr~~l~~kL~~H~GcVntV~FN~----~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~S----GH~~NvfQaKFiP~s~d~- 200 (559)
T KOG1334|consen 130 QRLRLQKKLNKHKGCVNTVHFNQ----RGDVLASGSDDLQVVVWDWVSGSPKLSFES----GHCNNVFQAKFIPFSGDR- 200 (559)
T ss_pred HHhhhhhcccCCCCccceeeecc----cCceeeccCccceEEeehhhccCccccccc----ccccchhhhhccCCCCCc-
Confidence 45667778899999999999998 699999999999 99999998887766654 688888888888665556
Q ss_pred EEEEeecCCeEEEEEcCCcc-c--cceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCC-
Q 017553 100 FLVAGGINGIIRVIDVSNEK-L--HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRN- 175 (369)
Q Consensus 100 ~l~~~~~dg~i~vwd~~~~~-~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~- 175 (369)
-+++++.||.+++=.+.... . ...+..|.++|.-++.-|.....|.+++.|+.+.-+|++.+.+...+.....+..
T Consensus 201 ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~ 280 (559)
T KOG1334|consen 201 TIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKE 280 (559)
T ss_pred CceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCcc
Confidence 79999999999987764332 2 3455679999999999998889999999999999999998876655544334555
Q ss_pred --cEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--Cc
Q 017553 176 --EVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GD 251 (369)
Q Consensus 176 --~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~ 251 (369)
..+.++..|.+.+.+++++.|..+++||.+......... ....-.|-.......-.|+++.|+ +.
T Consensus 281 ~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~-----------~~~~f~p~hl~~d~~v~ITgl~Ysh~~s 349 (559)
T KOG1334|consen 281 RVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNG-----------VLDKFCPHHLVEDDPVNITGLVYSHDGS 349 (559)
T ss_pred ceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccc-----------hhhhcCCccccccCcccceeEEecCCcc
Confidence 578999999788899999999999999999832210000 000011122222445679999998 55
Q ss_pred EEEEeecCCeEEEecCCCCCCCC---CCCccceeee-ccCCC--CCeeEEEEe-ecCCccEEEEecCCCeEEEEEccCCC
Q 017553 252 FILSKSVDNEIVLWEPKMKEQSP---GEGTADILQK-YPVPE--CDIWFIKFS-CDFHYNAAAIGNREGKIFVWELQSSP 324 (369)
Q Consensus 252 ~l~~~~~d~~i~i~d~~~~~~~~---~~~~~~~~~~-~~~~~--~~i~~~~~s-~~~~~~~l~~~~~dg~i~i~d~~~~~ 324 (369)
-+++...|-.|+++....+.... .......+.. +++|. ..|..+-|- |... ++++|+.-|.|.||+-++++
T Consensus 350 ElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsE--yVvSGSDCGhIFiW~K~t~e 427 (559)
T KOG1334|consen 350 ELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSE--YVVSGSDCGHIFIWDKKTGE 427 (559)
T ss_pred ceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccc--eEEecCccceEEEEecchhH
Confidence 66677888899999554443211 1101112223 66665 346666654 4453 99999999999999999884
Q ss_pred ceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEec
Q 017553 325 PVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 366 (369)
Q Consensus 325 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~ 366 (369)
.+..+. +...-|+|+.=+|--..||+++-|..|+||--
T Consensus 428 --ii~~Me--gDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 428 --IIRFME--GDRHVVNCLEPHPHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred --HHHHhh--cccceEeccCCCCCCchhhccCCccceeeecC
Confidence 455555 54558999999999999999999999999964
No 165
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.5e-23 Score=159.28 Aligned_cols=230 Identities=18% Similarity=0.217 Sum_probs=162.2
Q ss_pred EEEEEcCCccc-----cceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCc-----EEEEeeccCCCCCcEEE
Q 017553 110 IRVIDVSNEKL-----HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI-----CILIFAGAGGHRNEVLS 179 (369)
Q Consensus 110 i~vwd~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-----~~~~~~~~~~~~~~v~~ 179 (369)
++-|+.+..+. +..+++|.+.|++++|+. ++..|++++.|+.|++|+++... +++.-. .-+..+.
T Consensus 63 ~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsS-dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv----e~dhpT~ 137 (420)
T KOG2096|consen 63 NDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSS-DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV----EYDHPTR 137 (420)
T ss_pred hhhhcccCCCcccchhhhhhhccCCceeeeEEcC-CCceeEEEeCCceEEEEecchhhhhhhhHhhccc----cCCCceE
Confidence 45566555443 356789999999999999 99999999999999999997632 121111 2235688
Q ss_pred EEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEee
Q 017553 180 VDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS 257 (369)
Q Consensus 180 ~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~ 257 (369)
+.|.|+...+++++-...++++|.+...... ..++... . ......-..|.-.+..+-.- +.++++++
T Consensus 138 V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG-~~~~~~v---------~-~D~~~f~~kh~v~~i~iGiA~~~k~imsas 206 (420)
T KOG2096|consen 138 VVFAPDCKSVVVSVKRGNKLCVYKLVKKTDG-SGSHHFV---------H-IDNLEFERKHQVDIINIGIAGNAKYIMSAS 206 (420)
T ss_pred EEECCCcceEEEEEccCCEEEEEEeeecccC-CCCcccc---------c-ccccccchhcccceEEEeecCCceEEEEec
Confidence 9999966667777777778999988762210 0000000 0 00011112234444443332 77999999
Q ss_pred cCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEcc---CCCce-eEEEeec
Q 017553 258 VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ---SSPPV-LIARLSH 333 (369)
Q Consensus 258 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~---~~~~~-~~~~~~~ 333 (369)
.|..|.+|+++ ++ .+..+......-+..+.||+|+ ++++++-.-.|++|.+- .+..+ ....+..
T Consensus 207 ~dt~i~lw~lk-Gq---------~L~~idtnq~~n~~aavSP~GR--Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~L 274 (420)
T KOG2096|consen 207 LDTKICLWDLK-GQ---------LLQSIDTNQSSNYDAAVSPDGR--FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSL 274 (420)
T ss_pred CCCcEEEEecC-Cc---------eeeeeccccccccceeeCCCCc--EEEEecCCCCceEEEEEeccCcchhhhhhhhee
Confidence 99999999999 43 5677777667777889999997 88888888889999863 22211 1222334
Q ss_pred CCCccceEEEEecCCCCEEEEeecCCeEEEEecC
Q 017553 334 AQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 334 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 367 (369)
.+|.+.|..++|+++...++|.+.||.++|||+.
T Consensus 275 kGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 275 KGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred ccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence 4999999999999999999999999999999975
No 166
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.92 E-value=2.8e-23 Score=172.84 Aligned_cols=273 Identities=15% Similarity=0.226 Sum_probs=212.4
Q ss_pred CeEEEEEeeccCCCccEEEEecCCcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEE
Q 017553 35 PLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVID 114 (369)
Q Consensus 35 ~v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd 114 (369)
.|+.++|-| ||..|+.+.++++.+||..+|..+.+++ .|++.|++++|+ .||+ .+++|+.|..|.+|+
T Consensus 14 ci~d~afkP----DGsqL~lAAg~rlliyD~ndG~llqtLK-----gHKDtVycVAys--~dGk-rFASG~aDK~VI~W~ 81 (1081)
T KOG1538|consen 14 CINDIAFKP----DGTQLILAAGSRLLVYDTSDGTLLQPLK-----GHKDTVYCVAYA--KDGK-RFASGSADKSVIIWT 81 (1081)
T ss_pred chheeEECC----CCceEEEecCCEEEEEeCCCcccccccc-----cccceEEEEEEc--cCCc-eeccCCCceeEEEec
Confidence 799999999 6888998889999999999999999998 588999999999 9999 999999999999998
Q ss_pred cCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEe
Q 017553 115 VSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG 194 (369)
Q Consensus 115 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 194 (369)
..- +-+-.+ .|++.|.|+.|+| -...|++++-. ..-+|...... +...+ ....+.+.+|.. +|.+++.|-
T Consensus 82 ~kl-EG~LkY-SH~D~IQCMsFNP-~~h~LasCsLs-dFglWS~~qK~-V~K~k----ss~R~~~CsWtn-DGqylalG~ 151 (1081)
T KOG1538|consen 82 SKL-EGILKY-SHNDAIQCMSFNP-ITHQLASCSLS-DFGLWSPEQKS-VSKHK----SSSRIICCSWTN-DGQYLALGM 151 (1081)
T ss_pred ccc-cceeee-ccCCeeeEeecCc-hHHHhhhcchh-hccccChhhhh-HHhhh----hheeEEEeeecC-CCcEEEEec
Confidence 432 222222 5999999999999 77889988863 56788876433 22222 456788999997 999999999
Q ss_pred eCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee-------CcEEEEeecCCeEEEecC
Q 017553 195 MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-------GDFILSKSVDNEIVLWEP 267 (369)
Q Consensus 195 ~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-------~~~l~~~~~d~~i~i~d~ 267 (369)
.+|+|.+-+-.... ...+..-.+.+.+|.+++|+ .+.+++.....++.+|.+
T Consensus 152 ~nGTIsiRNk~gEe---------------------k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L 210 (1081)
T KOG1538|consen 152 FNGTISIRNKNGEE---------------------KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL 210 (1081)
T ss_pred cCceEEeecCCCCc---------------------ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe
Confidence 99999887544311 11122334567889999996 247888888888999888
Q ss_pred CCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecC
Q 017553 268 KMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSY 347 (369)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 347 (369)
.... +..-..-.-...++.+.++|. +++.|+.|+.+.+|.-+. ..+.++. .....|..++..|
T Consensus 211 sG~~----------Igk~r~L~FdP~CisYf~NGE--y~LiGGsdk~L~~fTR~G---vrLGTvg--~~D~WIWtV~~~P 273 (1081)
T KOG1538|consen 211 SGKQ----------IGKDRALNFDPCCISYFTNGE--YILLGGSDKQLSLFTRDG---VRLGTVG--EQDSWIWTVQAKP 273 (1081)
T ss_pred ccee----------ecccccCCCCchhheeccCCc--EEEEccCCCceEEEeecC---eEEeecc--ccceeEEEEEEcc
Confidence 6542 222222233456788999997 899999999999997543 4555554 4457899999999
Q ss_pred CCCEEEEeecCCeEEEEecC
Q 017553 348 DGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 348 ~~~~l~s~~~dg~i~vw~~~ 367 (369)
++++++.|+.||+|-.|++.
T Consensus 274 NsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 274 NSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred CCceEEEEEccCeeehhhhH
Confidence 99999999999999999874
No 167
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.92 E-value=5.9e-25 Score=186.69 Aligned_cols=284 Identities=14% Similarity=0.245 Sum_probs=221.1
Q ss_pred cceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCcc
Q 017553 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIP 99 (369)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~ 99 (369)
...+.++.|.+|..+|+|+.|.. .|.++++|++|. ++||...++.++..+. .|++.|+.++.+ .++.
T Consensus 178 qkmk~ikrLlgH~naVyca~fDr----tg~~Iitgsdd~lvKiwS~et~~~lAs~r-----Ghs~ditdlavs--~~n~- 245 (1113)
T KOG0644|consen 178 QKMKNIKRLLGHRNAVYCAIFDR----TGRYIITGSDDRLVKIWSMETARCLASCR-----GHSGDITDLAVS--SNNT- 245 (1113)
T ss_pred HHHHHHHHHHhhhhheeeeeecc----ccceEeecCccceeeeeeccchhhhccCC-----CCccccchhccc--hhhh-
Confidence 45566777889999999999998 699999999999 9999999999999888 588899999987 5566
Q ss_pred EEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEee-ccC-CCCCcE
Q 017553 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFA-GAG-GHRNEV 177 (369)
Q Consensus 100 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~-~~~~~v 177 (369)
++++++.|..|++|.+.++.++..+.+|++.|++++|+| ..+.+.||++++||.+- ....... ... .....+
T Consensus 246 ~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP-----~~sss~dgt~~~wd~r~-~~~~y~prp~~~~~~~~~ 319 (1113)
T KOG0644|consen 246 MIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSP-----RASSSDDGTCRIWDARL-EPRIYVPRPLKFTEKDLV 319 (1113)
T ss_pred hhhhcccCceEEEEecCCCchHHHHhccccceeeeccCc-----cccCCCCCceEeccccc-cccccCCCCCCcccccce
Confidence 899999999999999999999999999999999999999 33789999999999872 1111111 000 123445
Q ss_pred EEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee---CcEEE
Q 017553 178 LSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFIL 254 (369)
Q Consensus 178 ~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~ 254 (369)
.++.|.. .+.-++|++.|+.-..|.+... ..+...+.-+.++ ..+.+
T Consensus 320 ~s~~~~~-~~~~f~Tgs~d~ea~n~e~~~l-----------------------------~~~~~~lif~t~ssd~~~~~~ 369 (1113)
T KOG0644|consen 320 DSILFEN-NGDRFLTGSRDGEARNHEFEQL-----------------------------AWRSNLLIFVTRSSDLSSIVV 369 (1113)
T ss_pred eeeeccc-cccccccccCCcccccchhhHh-----------------------------hhhccceEEEeccccccccce
Confidence 5666665 7778999999999888887651 1111111111111 34566
Q ss_pred EeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecC
Q 017553 255 SKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHA 334 (369)
Q Consensus 255 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 334 (369)
++-.+-.+.+|++.++. .++...+|...+..+.++|-.. ....+++.||...|||+..+.+......
T Consensus 370 ~ar~~~~~~vwnl~~g~---------l~H~l~ghsd~~yvLd~Hpfn~-ri~msag~dgst~iwdi~eg~pik~y~~--- 436 (1113)
T KOG0644|consen 370 TARNDHRLCVWNLYTGQ---------LLHNLMGHSDEVYVLDVHPFNP-RIAMSAGYDGSTIIWDIWEGIPIKHYFI--- 436 (1113)
T ss_pred eeeeeeEeeeeecccch---------hhhhhcccccceeeeeecCCCc-HhhhhccCCCceEeeecccCCcceeeec---
Confidence 66777889999999886 5677777888899999999876 4667889999999999999965554442
Q ss_pred CCccceEEEEecCCCCEEEEeecCCeEEEEec
Q 017553 335 QSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 366 (369)
Q Consensus 335 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~ 366 (369)
+| +.+....||+||..++....-|.++|...
T Consensus 437 gh-~kl~d~kFSqdgts~~lsd~hgql~i~g~ 467 (1113)
T KOG0644|consen 437 GH-GKLVDGKFSQDGTSIALSDDHGQLYILGT 467 (1113)
T ss_pred cc-ceeeccccCCCCceEecCCCCCceEEecc
Confidence 33 56778999999999998888888888764
No 168
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.92 E-value=1.4e-23 Score=155.21 Aligned_cols=301 Identities=12% Similarity=0.084 Sum_probs=204.1
Q ss_pred eeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEe
Q 017553 26 TNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG 104 (369)
Q Consensus 26 ~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~ 104 (369)
...|++|.+.|+++.|-. ..+|.++..-+ |++|++.+......+..+ +...|..+... |++ .|.+-
T Consensus 7 ~fvLRp~~~~v~s~~fqa-----~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~----g~~~it~lq~~--p~d--~l~tq 73 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLFQA-----NERLMSGLSVGIVKMWVLQTERDLPLIRLF----GRLFITNLQSI--PND--SLDTQ 73 (323)
T ss_pred eeEeccccchheehhhcc-----chhhhcccccceEEEEEeecCccchhhhhh----ccceeeceeec--CCc--chhhc
Confidence 344679999999999988 45688888777 999999988877777642 55566666665 665 48999
Q ss_pred ecCCeEEEEEcCCccccceeeccccceEEEEecCCC-------C-ceEEEEeCCC-cEEEEEccCCcEEEEeec-cCCCC
Q 017553 105 GINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLK-------P-SLVVSASKDE-SVRLWNVQTGICILIFAG-AGGHR 174 (369)
Q Consensus 105 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-------~-~~l~s~~~dg-~i~vwd~~~~~~~~~~~~-~~~~~ 174 (369)
+.|+.+.+|++.-+.. +..|.-.++++-|.+.. . .+++.-++.. .+.+-|......++.... ..+..
T Consensus 74 gRd~~L~lw~ia~s~~---i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Kl 150 (323)
T KOG0322|consen 74 GRDPLLILWTIAYSAF---ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKL 150 (323)
T ss_pred CCCceEEEEEccCcce---EEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhcccc
Confidence 9999999999876433 23344556666665410 0 1111111110 122222222222222111 11345
Q ss_pred CcEEEEEecCCC--ceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--C
Q 017553 175 NEVLSVDFHPSD--IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--G 250 (369)
Q Consensus 175 ~~v~~~~~~~~~--~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~ 250 (369)
+.+++..+.... .-++++|..+|.+.+||+.++......+..+ ........|..+|.++.|. -
T Consensus 151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~-------------kv~~~~ash~qpvlsldyas~~ 217 (323)
T KOG0322|consen 151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSS-------------KVESPNASHKQPVLSLDYASSC 217 (323)
T ss_pred CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccccc-------------ccccchhhccCcceeeeechhh
Confidence 667777754322 3456778889999999999964443332221 1233456688999999997 4
Q ss_pred cEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEE
Q 017553 251 DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR 330 (369)
Q Consensus 251 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 330 (369)
+.=++|+.+..+..|++...... .+.-.........+..+.+-||++ .+|+++.|++||||..++.. .+..
T Consensus 218 ~rGisgga~dkl~~~Sl~~s~gs-----lq~~~e~~lknpGv~gvrIRpD~K--IlATAGWD~RiRVyswrtl~--pLAV 288 (323)
T KOG0322|consen 218 DRGISGGADDKLVMYSLNHSTGS-----LQIRKEITLKNPGVSGVRIRPDGK--ILATAGWDHRIRVYSWRTLN--PLAV 288 (323)
T ss_pred cCCcCCCccccceeeeeccccCc-----ccccceEEecCCCccceEEccCCc--EEeecccCCcEEEEEeccCC--chhh
Confidence 45677888888999988765321 112222333456788899999997 99999999999999999985 4555
Q ss_pred eecCCCccceEEEEecCCCCEEEEeecCCeEEEEec
Q 017553 331 LSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 366 (369)
Q Consensus 331 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~ 366 (369)
+. -|.+.|++++|+|+..++|.++.|++|.+|++
T Consensus 289 Lk--yHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 289 LK--YHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hh--hhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 55 67799999999999999999999999999986
No 169
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.92 E-value=2.5e-22 Score=171.17 Aligned_cols=274 Identities=13% Similarity=0.100 Sum_probs=199.9
Q ss_pred EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccc--ccee----eccccceEE
Q 017553 60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL--HKSF----VGHGDSINE 133 (369)
Q Consensus 60 v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~--~~~~----~~~~~~v~~ 133 (369)
+.||++.........- .....|.+++|+ |....+++.|..+|.|.+||+..+.. ...+ ..|..+++.
T Consensus 224 ~~vW~~~~p~~Pe~~~-----~~~s~v~~~~f~--p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~ 296 (555)
T KOG1587|consen 224 LLVWSLKNPNTPELVL-----ESPSEVTCLKFC--PFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTA 296 (555)
T ss_pred EEEEecCCCCCceEEE-----ecCCceeEEEec--cCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEE
Confidence 8899987663222221 245678888888 76666899999999999999987654 2222 358899999
Q ss_pred EEecCCCCc--eEEEEeCCCcEEEEEccCCcEEE---EeeccC------CCCCcEEEEEecCCCceEEEEEeeCCcEEEE
Q 017553 134 IRTQPLKPS--LVVSASKDESVRLWNVQTGICIL---IFAGAG------GHRNEVLSVDFHPSDIYRIASCGMDNTVKIW 202 (369)
Q Consensus 134 ~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~---~~~~~~------~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~ 202 (369)
+.|.. +.. -|++++.||.|..|+++.-.... ...... .....++++.|.+.+.+.|+.|+.+|.|.--
T Consensus 297 vvW~~-~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~ 375 (555)
T KOG1587|consen 297 VVWLQ-NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKG 375 (555)
T ss_pred EEEec-cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEE
Confidence 99977 433 49999999999999886432211 111000 1234678999999889999999999998774
Q ss_pred EccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee---CcEEEEeecCCeEEEecCCCCCCCCCCCcc
Q 017553 203 SMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTA 279 (369)
Q Consensus 203 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 279 (369)
+......... ....+......|.+.|.++.++ ...+++++ |-+++||.......
T Consensus 376 ~r~g~~~~~~---------------~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~------- 432 (555)
T KOG1587|consen 376 CRKGYTPAPE---------------VSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIAS------- 432 (555)
T ss_pred eccCCccccc---------------ccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCC-------
Confidence 4333111100 1123344667789999999987 55666666 99999999873322
Q ss_pred ceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCC
Q 017553 280 DILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDG 359 (369)
Q Consensus 280 ~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 359 (369)
++..+..+...+++++|||-.. .+++++..||.|.+||+......++.... .+....+.+.|+++|+.|++|...|
T Consensus 433 -Pl~~~~~~~~~v~~vaWSptrp-avF~~~d~~G~l~iWDLl~~~~~Pv~s~~--~~~~~l~~~~~s~~g~~lavGd~~G 508 (555)
T KOG1587|consen 433 -PLLSLDSSPDYVTDVAWSPTRP-AVFATVDGDGNLDIWDLLQDDEEPVLSQK--VCSPALTRVRWSPNGKLLAVGDANG 508 (555)
T ss_pred -cchhhhhccceeeeeEEcCcCc-eEEEEEcCCCceehhhhhccccCCccccc--ccccccceeecCCCCcEEEEecCCC
Confidence 5556666666799999999877 68999999999999999887666666655 3356778899999999999999999
Q ss_pred eEEEEecCC
Q 017553 360 AIWRWDAIP 368 (369)
Q Consensus 360 ~i~vw~~~~ 368 (369)
.+++|++.+
T Consensus 509 ~~~~~~l~~ 517 (555)
T KOG1587|consen 509 TTHILKLSE 517 (555)
T ss_pred cEEEEEcCc
Confidence 999999864
No 170
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=2.5e-22 Score=175.06 Aligned_cols=301 Identities=13% Similarity=0.141 Sum_probs=212.0
Q ss_pred cCCcCeEEEEEeeccCCCccEEEEec-CCcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCe
Q 017553 31 EGKRPLYAVVFNFIDSRYFNVFATVG-GNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGI 109 (369)
Q Consensus 31 ~h~~~v~~~~~s~~~~~~~~~la~~~-~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~ 109 (369)
+...+-..+.|+| ....++++. .+.|+|||.+.++.+..+.... .....|..+.+.-..|.. ++++|+.||.
T Consensus 1062 ~n~~~pk~~~~hp----f~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~--~~~t~Vs~l~liNe~D~a-LlLtas~dGv 1134 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHP----FEPQIAAADDRERIRVWDWEKGRLLNGFDNGA--FPDTRVSDLELINEQDDA-LLLTASSDGV 1134 (1387)
T ss_pred cCCCCCceeeecC----CCceeEEcCCcceEEEEecccCceeccccCCC--CCCCccceeeeecccchh-heeeeccCce
Confidence 3344566788898 567777777 4459999999998876665432 345678888887555666 9999999999
Q ss_pred EEEEEcCCc-----cccceeec-------cccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcE
Q 017553 110 IRVIDVSNE-----KLHKSFVG-------HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEV 177 (369)
Q Consensus 110 i~vwd~~~~-----~~~~~~~~-------~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v 177 (369)
|+||+-... +.+..+.+ -.+.=.-+.|....+ +|+++|.-..|+|||......+..+.. +....|
T Consensus 1135 IRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G-~Ll~tGd~r~IRIWDa~~E~~~~diP~--~s~t~v 1211 (1387)
T KOG1517|consen 1135 IRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG-HLLVTGDVRSIRIWDAHKEQVVADIPY--GSSTLV 1211 (1387)
T ss_pred EEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC-eEEecCCeeEEEEEecccceeEeeccc--CCCccc
Confidence 999974322 22322221 111114567877444 555555578999999998877777663 455678
Q ss_pred EEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCc--eeeeeee--Cc-E
Q 017553 178 LSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY--VDCNRWL--GD-F 252 (369)
Q Consensus 178 ~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~--~~-~ 252 (369)
+++.-+...++++++|..||.|++||.|... ....+.....|+.. |..+.+. |- .
T Consensus 1212 TaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~--------------------~ds~v~~~R~h~~~~~Iv~~slq~~G~~e 1271 (1387)
T KOG1517|consen 1212 TALSADLVHGNIIAAGFADGSVRVYDRRMAP--------------------PDSLVCVYREHNDVEPIVHLSLQRQGLGE 1271 (1387)
T ss_pred eeecccccCCceEEEeecCCceEEeecccCC--------------------ccccceeecccCCcccceeEEeecCCCcc
Confidence 8887765578999999999999999999822 12356667778777 8888886 32 6
Q ss_pred EEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEee
Q 017553 253 ILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLS 332 (369)
Q Consensus 253 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 332 (369)
+++|+.+|.|++||++...... ......... ..+..+++..+++.+ .+|+|+. +.|.||++.......+....
T Consensus 1272 lvSgs~~G~I~~~DlR~~~~e~---~~~iv~~~~-yGs~lTal~VH~hap--iiAsGs~-q~ikIy~~~G~~l~~~k~n~ 1344 (1387)
T KOG1517|consen 1272 LVSGSQDGDIQLLDLRMSSKET---FLTIVAHWE-YGSALTALTVHEHAP--IIASGSA-QLIKIYSLSGEQLNIIKYNP 1344 (1387)
T ss_pred eeeeccCCeEEEEecccCcccc---cceeeeccc-cCccceeeeeccCCC--eeeecCc-ceEEEEecChhhhcccccCc
Confidence 9999999999999999852111 111111111 112488999999886 8999988 99999999876433332221
Q ss_pred --cCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 333 --HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 333 --~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
.....+.+.+++|+|-.-+||+|+.|..|.||....
T Consensus 1345 ~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1345 GFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred ccccCcCCCcceeeecchhHhhhhccCCceEEEeecCC
Confidence 113346789999999999999999999999997653
No 171
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.91 E-value=5.6e-23 Score=156.74 Aligned_cols=264 Identities=14% Similarity=0.178 Sum_probs=195.2
Q ss_pred cCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCe
Q 017553 31 EGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGI 109 (369)
Q Consensus 31 ~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~ 109 (369)
.|...-+.++|+-+-.....++|.+|.-+ |+|.|+.+++....+. .|...|+.+.+. |+..+++++++.|..
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~-----ghG~sINeik~~--p~~~qlvls~SkD~s 159 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYR-----GHGGSINEIKFH--PDRPQLVLSASKDHS 159 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhcccee-----ccCccchhhhcC--CCCCcEEEEecCCce
Confidence 48888999999873211245778877767 9999999999888888 588899999998 887779999999999
Q ss_pred EEEEEcCCccccceee---ccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEE---------------------
Q 017553 110 IRVIDVSNEKLHKSFV---GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICIL--------------------- 165 (369)
Q Consensus 110 i~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~--------------------- 165 (369)
|++|++++..++..+- +|.+.|.++.|++ ++..|++++.|.++++|++...+...
T Consensus 160 vRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~ 238 (385)
T KOG1034|consen 160 VRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPK 238 (385)
T ss_pred EEEEeccCCeEEEEecccccccCcEEEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccc
Confidence 9999999999887775 6999999999999 88999999999999999997322110
Q ss_pred ----EeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCC
Q 017553 166 ----IFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN 241 (369)
Q Consensus 166 ----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (369)
.+....-|...|-|+.|. ++++++-+-++.|..|..-....... ...+.+.....+..+.....
T Consensus 239 ~~fp~fst~diHrnyVDCvrw~---gd~ilSkscenaI~~w~pgkl~e~~~---------~vkp~es~~Ti~~~~~~~~c 306 (385)
T KOG1034|consen 239 THFPDFSTTDIHRNYVDCVRWF---GDFILSKSCENAIVCWKPGKLEESIH---------NVKPPESATTILGEFDYPMC 306 (385)
T ss_pred cccccccccccccchHHHHHHH---hhheeecccCceEEEEecchhhhhhh---------ccCCCccceeeeeEeccCcc
Confidence 011112477778888885 47899989999999998843111100 00011111223344555566
Q ss_pred ceeeeeee----CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEE
Q 017553 242 YVDCNRWL----GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFV 317 (369)
Q Consensus 242 ~v~~~~~~----~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i 317 (369)
.+.-+.|. ++.|+.|.+.|.+.+||++..++... ...........|...+||.|+. +|+..+.|+.|.-
T Consensus 307 ~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~-----ttl~~s~~~~tVRQ~sfS~dgs--~lv~vcdd~~Vwr 379 (385)
T KOG1034|consen 307 DIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKC-----TTLTHSKSGSTVRQTSFSRDGS--ILVLVCDDGTVWR 379 (385)
T ss_pred ceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccC-----ceEEeccccceeeeeeecccCc--EEEEEeCCCcEEE
Confidence 66666664 78999999999999999998875311 1111222346788899999997 8888899999999
Q ss_pred EEcc
Q 017553 318 WELQ 321 (369)
Q Consensus 318 ~d~~ 321 (369)
||.-
T Consensus 380 wdrv 383 (385)
T KOG1034|consen 380 WDRV 383 (385)
T ss_pred EEee
Confidence 9864
No 172
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.1e-22 Score=163.89 Aligned_cols=177 Identities=16% Similarity=0.302 Sum_probs=145.0
Q ss_pred cceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCcc
Q 017553 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIP 99 (369)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~ 99 (369)
+.+.+.+.|.||++-|+|++|+. +|.+||+|++|. +.|||...-+.+..+.. .|...|+++.|.+..+.+
T Consensus 38 rrL~lE~eL~GH~GCVN~LeWn~----dG~lL~SGSDD~r~ivWd~~~~KllhsI~T----gHtaNIFsvKFvP~tnnr- 108 (758)
T KOG1310|consen 38 RRLDLEAELTGHTGCVNCLEWNA----DGELLASGSDDTRLIVWDPFEYKLLHSIST----GHTANIFSVKFVPYTNNR- 108 (758)
T ss_pred hhcchhhhhccccceecceeecC----CCCEEeecCCcceEEeecchhcceeeeeec----ccccceeEEeeeccCCCe-
Confidence 44556677899999999999999 799999999999 99999987777777765 799999999999776777
Q ss_pred EEEEeecCCeEEEEEcCCc----------cccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcE------
Q 017553 100 FLVAGGINGIIRVIDVSNE----------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC------ 163 (369)
Q Consensus 100 ~l~~~~~dg~i~vwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~------ 163 (369)
++++|..|..|+++|+... .....+..|...|..|+-.|..++.+.++++||+|+-+|++....
T Consensus 109 iv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~ 188 (758)
T KOG1310|consen 109 IVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDED 188 (758)
T ss_pred EEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcccc
Confidence 9999999999999999742 345566679999999999996669999999999999999986321
Q ss_pred -EEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccC
Q 017553 164 -ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206 (369)
Q Consensus 164 -~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~ 206 (369)
...+......--...++.++|.+..+|++|+.|-..++||.+.
T Consensus 189 ~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr 232 (758)
T KOG1310|consen 189 CPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRR 232 (758)
T ss_pred ccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhh
Confidence 1111111122235678999998999999999999999999765
No 173
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.91 E-value=1.6e-22 Score=157.98 Aligned_cols=208 Identities=20% Similarity=0.318 Sum_probs=164.2
Q ss_pred cceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCc-------EEEEeeccCCCCCcEEEEEecCCCceEEEEE
Q 017553 121 HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI-------CILIFAGAGGHRNEVLSVDFHPSDIYRIASC 193 (369)
Q Consensus 121 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 193 (369)
.-.+.+|+++|..++|+|.+.+.|++||+|.+|.||++..+. ++..+. +|...|--++|+|.-.+.|+++
T Consensus 74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~---gH~rrVg~V~wHPtA~NVLlsa 150 (472)
T KOG0303|consen 74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELY---GHQRRVGLVQWHPTAPNVLLSA 150 (472)
T ss_pred CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEe---ecceeEEEEeecccchhhHhhc
Confidence 345678999999999999999999999999999999987653 344555 8999999999999888999999
Q ss_pred eeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEEEecCCCCC
Q 017553 194 GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKE 271 (369)
Q Consensus 194 ~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~ 271 (369)
+.|.+|.+|++.+++ .+..+. |++.|.++.|+ |.++++.+.|..|||||.++++
T Consensus 151 g~Dn~v~iWnv~tge-----------------------ali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~ 206 (472)
T KOG0303|consen 151 GSDNTVSIWNVGTGE-----------------------ALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGT 206 (472)
T ss_pred cCCceEEEEeccCCc-----------------------eeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCc
Confidence 999999999999943 344444 99999999997 9999999999999999999987
Q ss_pred CCCCCCccceeeeccCCCC-CeeEEEEeecCCccEEEEec---CCCeEEEEEccCCC-ceeEEEeecCCCccceEEEEec
Q 017553 272 QSPGEGTADILQKYPVPEC-DIWFIKFSCDFHYNAAAIGN---REGKIFVWELQSSP-PVLIARLSHAQSKSPIRQTAMS 346 (369)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~-~i~~~~~s~~~~~~~l~~~~---~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~v~~~~~s 346 (369)
.+..-..|.+ .-..+.|-.++. ++.+|. .+.++-+||..+.+ +.....+. ..+.|.---|.
T Consensus 207 ---------~v~e~~~heG~k~~Raifl~~g~--i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD---tSnGvl~PFyD 272 (472)
T KOG0303|consen 207 ---------VVSEGVAHEGAKPARAIFLASGK--IFTTGFSRMSERQIALWDPNNLEEPIALQELD---TSNGVLLPFYD 272 (472)
T ss_pred ---------EeeecccccCCCcceeEEeccCc--eeeeccccccccceeccCcccccCcceeEEec---cCCceEEeeec
Confidence 4555555542 344566777774 555553 57889999987754 23334443 33567666778
Q ss_pred CCCCEEEEe-ecCCeEEEEecCCC
Q 017553 347 YDGSTILSC-CEDGAIWRWDAIPT 369 (369)
Q Consensus 347 ~~~~~l~s~-~~dg~i~vw~~~~~ 369 (369)
+|..++..+ -.|+.||.|++.++
T Consensus 273 ~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 273 PDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred CCCCEEEEEecCCcceEEEEecCC
Confidence 888877554 48999999998764
No 174
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.91 E-value=1.9e-22 Score=153.59 Aligned_cols=240 Identities=17% Similarity=0.243 Sum_probs=181.6
Q ss_pred CcCeEEEEEee---ccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCC
Q 017553 33 KRPLYAVVFNF---IDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING 108 (369)
Q Consensus 33 ~~~v~~~~~s~---~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg 108 (369)
...|+..+|-| .+.++..++|+.+.+. |++||..+|+....+..+.....-....+++|+ |||. .|++|. ..
T Consensus 104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs--~DGe-qlfaGy-kr 179 (406)
T KOG2919|consen 104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFS--PDGE-QLFAGY-KR 179 (406)
T ss_pred CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEec--CCCC-eEeecc-cc
Confidence 45688877763 1223678999999998 999999999988887766422222233345554 9999 888776 56
Q ss_pred eEEEEEc-CCccc--cceee-----ccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEE
Q 017553 109 IIRVIDV-SNEKL--HKSFV-----GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSV 180 (369)
Q Consensus 109 ~i~vwd~-~~~~~--~~~~~-----~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~ 180 (369)
.|++||+ +.|+. +.... +..+.|.+++|+|.+...++.|+...++-|+.-..+.++..+. +|.+.|+.+
T Consensus 180 cirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg---gh~gGvThL 256 (406)
T KOG2919|consen 180 CIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG---GHGGGVTHL 256 (406)
T ss_pred eEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeec---ccCCCeeeE
Confidence 8999998 44432 11111 3467899999999888899999999999999988889998888 899999999
Q ss_pred EecCCCceEEEEEee-CCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCC-ceeeeeee----CcEEE
Q 017553 181 DFHPSDIYRIASCGM-DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN-YVDCNRWL----GDFIL 254 (369)
Q Consensus 181 ~~~~~~~~~l~~~~~-d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~----~~~l~ 254 (369)
+|.+ +++.|++|.. |-.|..||+|.. ..++..+..|.. .-..+.|+ +++|+
T Consensus 257 ~~~e-dGn~lfsGaRk~dkIl~WDiR~~----------------------~~pv~~L~rhv~~TNQRI~FDld~~~~~La 313 (406)
T KOG2919|consen 257 QWCE-DGNKLFSGARKDDKILCWDIRYS----------------------RDPVYALERHVGDTNQRILFDLDPKGEILA 313 (406)
T ss_pred Eecc-CcCeecccccCCCeEEEEeehhc----------------------cchhhhhhhhccCccceEEEecCCCCceee
Confidence 9999 7778888765 678999999983 345566666655 44556664 88999
Q ss_pred EeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCC
Q 017553 255 SKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE 312 (369)
Q Consensus 255 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~d 312 (369)
+|+.||.|++||++.... .+..+..+...++.+++.|--+ ++++++..
T Consensus 314 sG~tdG~V~vwdlk~~gn--------~~sv~~~~sd~vNgvslnP~mp--ilatssGq 361 (406)
T KOG2919|consen 314 SGDTDGSVRVWDLKDLGN--------EVSVTGNYSDTVNGVSLNPIMP--ILATSSGQ 361 (406)
T ss_pred ccCCCccEEEEecCCCCC--------cccccccccccccceecCcccc--eeeeccCc
Confidence 999999999999987432 4556666777889999999865 77776643
No 175
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.90 E-value=6.9e-22 Score=154.42 Aligned_cols=228 Identities=20% Similarity=0.345 Sum_probs=166.6
Q ss_pred CcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCc-------cccceeeccccceEEEEecCCCCceEEEEeCCCcE
Q 017553 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE-------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESV 153 (369)
Q Consensus 81 ~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i 153 (369)
.|..+|..++|+ |-+.+.+|+|++|.+|.||.+..+ +++..+.+|...|..++|+|.-.+.|++++.|..|
T Consensus 79 GHt~~vLDi~w~--PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v 156 (472)
T KOG0303|consen 79 GHTAPVLDIDWC--PFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV 156 (472)
T ss_pred CccccccccccC--ccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence 689999999999 544458999999999999998665 34677889999999999999888999999999999
Q ss_pred EEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecce
Q 017553 154 RLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV 233 (369)
Q Consensus 154 ~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (369)
.+|++.+|+.+..+. |.+.|+++.|+. +|.+|++.+.|..|++||.+++.. +
T Consensus 157 ~iWnv~tgeali~l~----hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~-----------------------v 208 (472)
T KOG0303|consen 157 SIWNVGTGEALITLD----HPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTV-----------------------V 208 (472)
T ss_pred EEEeccCCceeeecC----CCCeEEEEEecc-CCceeeeecccceeEEEcCCCCcE-----------------------e
Confidence 999999999998886 999999999998 999999999999999999999532 3
Q ss_pred eeeccCCCc-eeeeeee--CcEEEEee----cCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEE
Q 017553 234 FIASVHSNY-VDCNRWL--GDFILSKS----VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAA 306 (369)
Q Consensus 234 ~~~~~~~~~-v~~~~~~--~~~l~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l 306 (369)
.....|.+. -..+.|- ++ +++.+ .+..+.+||..+.+.. ..+.++... ..|.---|.++.+ .+.
T Consensus 209 ~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP------~~~~elDtS-nGvl~PFyD~dt~-ivY 279 (472)
T KOG0303|consen 209 SEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEP------IALQELDTS-NGVLLPFYDPDTS-IVY 279 (472)
T ss_pred eecccccCCCcceeEEeccCc-eeeeccccccccceeccCcccccCc------ceeEEeccC-CceEEeeecCCCC-EEE
Confidence 333344432 1223332 55 44433 3678999998876642 123344333 3343334556655 455
Q ss_pred EEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCC
Q 017553 307 AIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYD 348 (369)
Q Consensus 307 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 348 (369)
++|-.|+.|+.|.+.+..+ .+..+.......+=..+.|-|.
T Consensus 280 l~GKGD~~IRYyEit~d~P-~~hyln~f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 280 LCGKGDSSIRYFEITNEPP-FVHYLNTFSSKEPQRGMGFMPK 320 (472)
T ss_pred EEecCCcceEEEEecCCCc-eeEEecccccCCcccccccccc
Confidence 6788999999999998763 2333332122234445555553
No 176
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.90 E-value=9.3e-20 Score=158.89 Aligned_cols=291 Identities=25% Similarity=0.442 Sum_probs=217.5
Q ss_pred ecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCc-eeEEEeeeccCCcccceeEEEeeecCCCccEEEE-e
Q 017553 28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG-VIAALQSYVDEDKEESFYTVSWACNVDGIPFLVA-G 104 (369)
Q Consensus 28 ~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~-~ 104 (369)
.+..|...+.++.|.+ .+..++.++.++ +.+|+...+. ....+... +...+..+.+. .+++..+++. +
T Consensus 60 ~~~~~~~~i~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~ 130 (466)
T COG2319 60 LLRGHEDSITSIAFSP----DGELLLSGSSDGTIKLWDLDNGEKLIKSLEGL----HDSSVSKLALS-SPDGNSILLASS 130 (466)
T ss_pred eeeeccceEEEEEECC----CCcEEEEecCCCcEEEEEcCCCceeEEEEecc----CCCceeeEEEE-CCCcceEEeccC
Confidence 3568999999999999 578888888676 9999988776 55555532 11466667775 5777634444 3
Q ss_pred ecCCeEEEEEcCC-ccccceeeccccceEEEEecCCCCceEEEEeC-CCcEEEEEccCCcEEEEeeccCCCCCcEEEEEe
Q 017553 105 GINGIIRVIDVSN-EKLHKSFVGHGDSINEIRTQPLKPSLVVSASK-DESVRLWNVQTGICILIFAGAGGHRNEVLSVDF 182 (369)
Q Consensus 105 ~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~ 182 (369)
..|+.+.+|+... ......+..|...|..++|+| ++..+++++. |+.+++|++..+..+..+. +|...|.+++|
T Consensus 131 ~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~ 206 (466)
T COG2319 131 SLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSP-DGKLLASGSSLDGTIKLWDLRTGKPLSTLA---GHTDPVSSLAF 206 (466)
T ss_pred CCCccEEEEEecCCCeEEEEEecCcccEEEEEECC-CCCEEEecCCCCCceEEEEcCCCceEEeec---cCCCceEEEEE
Confidence 4499999999987 777888899999999999999 7778888885 9999999999888888887 69999999999
Q ss_pred cCCCce-EEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeeccee-eeccCCCceeeeeee--CcEEEEeec
Q 017553 183 HPSDIY-RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF-IASVHSNYVDCNRWL--GDFILSKSV 258 (369)
Q Consensus 183 ~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~--~~~l~~~~~ 258 (369)
+| ++. .+++++.|+.+++||...+ .... .+..|.... ...|. +..+++++.
T Consensus 207 ~~-~~~~~~~~~~~d~~i~~wd~~~~-----------------------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 261 (466)
T COG2319 207 SP-DGGLLIASGSSDGTIRLWDLSTG-----------------------KLLRSTLSGHSDSV-VSSFSPDGSLLASGSS 261 (466)
T ss_pred cC-CcceEEEEecCCCcEEEEECCCC-----------------------cEEeeecCCCCcce-eEeECCCCCEEEEecC
Confidence 98 665 5666699999999987742 1222 455566553 22443 668889999
Q ss_pred CCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCcc
Q 017553 259 DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKS 338 (369)
Q Consensus 259 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 338 (369)
|+.+++|+.+.... .+..+..|...+.++.|.|++. .+++++.|+.+.+||........... ...|..
T Consensus 262 d~~~~~~~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~ 329 (466)
T COG2319 262 DGTIRLWDLRSSSS--------LLRTLSGHSSSVLSVAFSPDGK--LLASGSSDGTVRLWDLETGKLLSSLT--LKGHEG 329 (466)
T ss_pred CCcEEEeeecCCCc--------EEEEEecCCccEEEEEECCCCC--EEEEeeCCCcEEEEEcCCCceEEEee--ecccCC
Confidence 99999999987653 1222255678899999999665 66668888889999888775333322 125556
Q ss_pred ceEEEEecCCCCEEEEe-ecCCeEEEEecCC
Q 017553 339 PIRQTAMSYDGSTILSC-CEDGAIWRWDAIP 368 (369)
Q Consensus 339 ~v~~~~~s~~~~~l~s~-~~dg~i~vw~~~~ 368 (369)
.+..+.|.+++..++.+ ..|+.+++|++..
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 360 (466)
T COG2319 330 PVSSLSFSPDGSLLVSGGSDDGTIRLWDLRT 360 (466)
T ss_pred ceEEEEECCCCCEEEEeecCCCcEEeeecCC
Confidence 79999994343556555 6888999998764
No 177
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.89 E-value=1.5e-21 Score=146.60 Aligned_cols=251 Identities=15% Similarity=0.216 Sum_probs=188.6
Q ss_pred cCCcCeEEEEEeeccC-CCccEEEEecCCcEEEEEecCCceeEE----EeeeccCCcccceeEEEeeecCCCccEEEEee
Q 017553 31 EGKRPLYAVVFNFIDS-RYFNVFATVGGNRVTVYQCLEGGVIAA----LQSYVDEDKEESFYTVSWACNVDGIPFLVAGG 105 (369)
Q Consensus 31 ~h~~~v~~~~~s~~~~-~~~~~la~~~~~~v~iw~~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~ 105 (369)
.|.-+++.+.|.|+.. ...++||++ .|.+++|.+...+.... +.......+..++++..|+ .-..+++.+++
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs-~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWn--e~dp~~igtSS 170 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATS-SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWN--EVDPNLIGTSS 170 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcc-cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccc--cCCcceeEeec
Confidence 6888999999999431 123456554 57799999874332222 2223334566788888887 43444899999
Q ss_pred cCCeEEEEEcCCccc---cceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEe
Q 017553 106 INGIIRVIDVSNEKL---HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDF 182 (369)
Q Consensus 106 ~dg~i~vwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~ 182 (369)
-|-+..|||++++.. ...+-+|..+|..++|.....++|++.+.||+||++|++.-+.-..+........+...++|
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW 250 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence 999999999998733 55677899999999999866779999999999999999987654444432233567889999
Q ss_pred cCCCceEEEEEeeCC-cEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee---CcEEEEeec
Q 017553 183 HPSDIYRIASCGMDN-TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSV 258 (369)
Q Consensus 183 ~~~~~~~l~~~~~d~-~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~ 258 (369)
++++.+++++-..|. .|.+.|+|.. ..++..+..|...|..++|. ...+++++.
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P----------------------~tpva~L~~H~a~VNgIaWaPhS~~hictaGD 308 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVP----------------------CTPVARLRNHQASVNGIAWAPHSSSHICTAGD 308 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCC----------------------CcceehhhcCcccccceEecCCCCceeeecCC
Confidence 998999999887775 6999999984 45788899999999999996 679999999
Q ss_pred CCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecC
Q 017553 259 DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR 311 (369)
Q Consensus 259 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~ 311 (369)
|..+.+||+.+.-.... ..++..+. ....|+.+.|++... ..++.+..
T Consensus 309 D~qaliWDl~q~~~~~~---~dPilay~-a~~EVNqi~Ws~~~~-Dwiai~~~ 356 (364)
T KOG0290|consen 309 DCQALIWDLQQMPRENG---EDPILAYT-AGGEVNQIQWSSSQP-DWIAICFG 356 (364)
T ss_pred cceEEEEecccccccCC---CCchhhhh-ccceeeeeeecccCC-CEEEEEec
Confidence 99999999987643221 22344444 457899999997655 47776654
No 178
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=4.5e-20 Score=135.38 Aligned_cols=283 Identities=16% Similarity=0.196 Sum_probs=191.2
Q ss_pred cCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCC-----ceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecC
Q 017553 34 RPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEG-----GVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN 107 (369)
Q Consensus 34 ~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~d 107 (369)
..|.+-+++| .+++|+.|+.++ |.+..+... +............|+++++.++|. | . +|++|+ |
T Consensus 11 ~tvf~qa~sp----~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~---d-~-~Lls~g-d 80 (325)
T KOG0649|consen 11 NTVFAQAISP----SKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH---D-D-FLLSGG-D 80 (325)
T ss_pred HHHHHHhhCC----cceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee---h-h-heeecc-C
Confidence 4577788999 689999999988 999887521 111122222334799999999986 2 2 677776 5
Q ss_pred CeEEEEEcCCccc------cce--eeccc-----cceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCC
Q 017553 108 GIIRVIDVSNEKL------HKS--FVGHG-----DSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR 174 (369)
Q Consensus 108 g~i~vwd~~~~~~------~~~--~~~~~-----~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 174 (369)
|.|+-|..+.... ... ...|. -.|+++...| ..+-++.++.|+.++-||+++|+..+.++ +|+
T Consensus 81 G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP-~enSi~~AgGD~~~y~~dlE~G~i~r~~r---GHt 156 (325)
T KOG0649|consen 81 GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDP-SENSILFAGGDGVIYQVDLEDGRIQREYR---GHT 156 (325)
T ss_pred ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEecc-CCCcEEEecCCeEEEEEEecCCEEEEEEc---CCc
Confidence 9999998765422 111 11232 3689999999 45555555689999999999999999999 899
Q ss_pred CcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeeeCcEEE
Q 017553 175 NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFIL 254 (369)
Q Consensus 175 ~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~ 254 (369)
+.|.++.--. ....+++|+.||++|+||.++.+........ ..+-...+.....|.+++-+.++++
T Consensus 157 DYvH~vv~R~-~~~qilsG~EDGtvRvWd~kt~k~v~~ie~y-------------k~~~~lRp~~g~wigala~~edWlv 222 (325)
T KOG0649|consen 157 DYVHSVVGRN-ANGQILSGAEDGTVRVWDTKTQKHVSMIEPY-------------KNPNLLRPDWGKWIGALAVNEDWLV 222 (325)
T ss_pred ceeeeeeecc-cCcceeecCCCccEEEEeccccceeEEeccc-------------cChhhcCcccCceeEEEeccCceEE
Confidence 9999999854 5567999999999999999995432211100 1111112233457888888889988
Q ss_pred EeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecC
Q 017553 255 SKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHA 334 (369)
Q Consensus 255 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 334 (369)
+|+ ...+.+|.++..+ +...++.+ ..+..+.|-.+ .+++++..+.|.-|.+..- .....+
T Consensus 223 CGg-Gp~lslwhLrsse---------~t~vfpip-a~v~~v~F~~d----~vl~~G~g~~v~~~~l~Gv---l~a~ip-- 282 (325)
T KOG0649|consen 223 CGG-GPKLSLWHLRSSE---------STCVFPIP-ARVHLVDFVDD----CVLIGGEGNHVQSYTLNGV---LQANIP-- 282 (325)
T ss_pred ecC-CCceeEEeccCCC---------ceEEEecc-cceeEeeeecc----eEEEeccccceeeeeeccE---EEEecc--
Confidence 865 5679999999886 34444433 45666777665 5777777788999987653 333333
Q ss_pred CCccceEEEEecCCC-CEEEEeecCCeEEEE
Q 017553 335 QSKSPIRQTAMSYDG-STILSCCEDGAIWRW 364 (369)
Q Consensus 335 ~~~~~v~~~~~s~~~-~~l~s~~~dg~i~vw 364 (369)
......++..|+..- ++|-.++....+.|+
T Consensus 283 ~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 283 VESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred CCccceeeecccCCceEEEEecccceeeeee
Confidence 222344555554332 456666666777665
No 179
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=1e-21 Score=161.34 Aligned_cols=239 Identities=15% Similarity=0.202 Sum_probs=182.6
Q ss_pred CCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEcc
Q 017553 80 EDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 159 (369)
Q Consensus 80 ~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~ 159 (369)
..|.+.|.+++.. |.|. +|++|+.||+|+||.+.++.+++++. ..+.|.|++|+|.....++++.....+.|.+..
T Consensus 397 rGHtg~Vr~iSvd--p~G~-wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~ 472 (733)
T KOG0650|consen 397 RGHTGLVRSISVD--PSGE-WLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPI 472 (733)
T ss_pred eccCCeEEEEEec--CCcc-eeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCcc
Confidence 3688999999888 8898 99999999999999999999999987 567899999999544444444444445555433
Q ss_pred CCcE-------------------------------------E-EEeeccCCCCCcEEEEEecCCCceEEEEEeeC---Cc
Q 017553 160 TGIC-------------------------------------I-LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD---NT 198 (369)
Q Consensus 160 ~~~~-------------------------------------~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---~~ 198 (369)
-|.. + ..+ .|...|..+.|+. .|.+|++...+ ..
T Consensus 473 ~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I----~~~k~i~~vtWHr-kGDYlatV~~~~~~~~ 547 (733)
T KOG0650|consen 473 FGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVI----KHPKSIRQVTWHR-KGDYLATVMPDSGNKS 547 (733)
T ss_pred ccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEE----ecCCccceeeeec-CCceEEEeccCCCcce
Confidence 2200 0 111 4888999999998 88999987664 46
Q ss_pred EEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCC
Q 017553 199 VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGE 276 (369)
Q Consensus 199 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~ 276 (369)
|.|+++... .....+....+.+.++.|. ..+|++++ ...|++||+..++
T Consensus 548 VliHQLSK~-----------------------~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqe----- 598 (733)
T KOG0650|consen 548 VLIHQLSKR-----------------------KSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQE----- 598 (733)
T ss_pred EEEEecccc-----------------------cccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHH-----
Confidence 889988772 2222333445667788887 33555544 5789999998765
Q ss_pred CccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEee
Q 017553 277 GTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCC 356 (369)
Q Consensus 277 ~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 356 (369)
.+..+......|..++.+|.|. -|+.|+.|+.+..||+.-.. +..+.+. .|...+++++|++.-.++++|+
T Consensus 599 ----lvKkL~tg~kwiS~msihp~GD--nli~gs~d~k~~WfDldlss-kPyk~lr--~H~~avr~Va~H~ryPLfas~s 669 (733)
T KOG0650|consen 599 ----LVKKLLTGSKWISSMSIHPNGD--NLILGSYDKKMCWFDLDLSS-KPYKTLR--LHEKAVRSVAFHKRYPLFASGS 669 (733)
T ss_pred ----HHHHHhcCCeeeeeeeecCCCC--eEEEecCCCeeEEEEcccCc-chhHHhh--hhhhhhhhhhhccccceeeeec
Confidence 5666666667899999999997 78889999999999998664 3455555 6778999999999999999999
Q ss_pred cCCeEEEEe
Q 017553 357 EDGAIWRWD 365 (369)
Q Consensus 357 ~dg~i~vw~ 365 (369)
.||.+.|+.
T Consensus 670 dDgtv~Vfh 678 (733)
T KOG0650|consen 670 DDGTVIVFH 678 (733)
T ss_pred CCCcEEEEe
Confidence 999999875
No 180
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=4.2e-22 Score=162.45 Aligned_cols=266 Identities=17% Similarity=0.229 Sum_probs=184.2
Q ss_pred cceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecC---CceeEEEeeeccCCcccceeEEEeeecCC
Q 017553 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLE---GGVIAALQSYVDEDKEESFYTVSWACNVD 96 (369)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 96 (369)
..|.+..++..|.+.|++++|.| ....|++++.++ +.+|++.+ .......+-+....|+++|.|+++. ++
T Consensus 282 k~w~ik~tl~s~~d~ir~l~~~~----sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~--~n 355 (577)
T KOG0642|consen 282 KKWNIKFTLRSHDDCIRALAFHP----SEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVP--SN 355 (577)
T ss_pred eecceeeeeecchhhhhhhhcCC----CCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEec--CC
Confidence 34666678889999999999999 467999999999 99999932 2111222222233799999999987 78
Q ss_pred CccEEEEeecCCeEEEEEcCCc----------cccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEE
Q 017553 97 GIPFLVAGGINGIIRVIDVSNE----------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILI 166 (369)
Q Consensus 97 g~~~l~~~~~dg~i~vwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 166 (369)
+. .+++|+.||+|+.|++... .....+.||.+.|+.+++++ ....|++++.||++++|+.....+ ..
T Consensus 356 ~~-~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~-~~ 432 (577)
T KOG0642|consen 356 GE-HCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESP-CT 432 (577)
T ss_pred ce-EEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecc-cccceeeecCCceEEeeccCCcCc-cc
Confidence 88 9999999999999966421 23467789999999999999 788899999999999999876665 33
Q ss_pred eeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeee
Q 017553 167 FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCN 246 (369)
Q Consensus 167 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 246 (369)
+.....| +...++.+-.....+.++. .....+++..... .
T Consensus 433 f~~~~e~-g~Plsvd~~ss~~a~~~~s---~~~~~~~~~~~ev--------------------~---------------- 472 (577)
T KOG0642|consen 433 FGEPKEH-GYPLSVDRTSSRPAHSLAS---FRFGYTSIDDMEV--------------------V---------------- 472 (577)
T ss_pred cCCcccc-CCcceEeeccchhHhhhhh---cccccccchhhhh--------------------h----------------
Confidence 4322122 3344566643122233322 2333333332100 0
Q ss_pred eeeCcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCce
Q 017553 247 RWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPV 326 (369)
Q Consensus 247 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 326 (369)
.+ ++++.-.... .......+..+.+.|... +.+++..|+.|+++|..+++
T Consensus 473 ---s~----------~~~~~s~~~~-------------~~~~~~~in~vVs~~~~~--~~~~~hed~~Ir~~dn~~~~-- 522 (577)
T KOG0642|consen 473 ---SD----------LLIFESSASP-------------GPRRYPQINKVVSHPTAD--ITFTAHEDRSIRFFDNKTGK-- 522 (577)
T ss_pred ---hh----------eeeccccCCC-------------cccccCccceEEecCCCC--eeEecccCCceecccccccc--
Confidence 00 1111111000 000113455667778775 88999999999999999985
Q ss_pred eEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecC
Q 017553 327 LIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 327 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 367 (369)
.+.... .|...++++++.|+|.+|++++.|+.+++|++.
T Consensus 523 ~l~s~~--a~~~svtslai~~ng~~l~s~s~d~sv~l~kld 561 (577)
T KOG0642|consen 523 ILHSMV--AHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLD 561 (577)
T ss_pred cchhee--eccceecceeecCCCceEEeecCCceeehhhcc
Confidence 444444 777899999999999999999999999999974
No 181
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.88 E-value=1.7e-18 Score=150.98 Aligned_cols=292 Identities=24% Similarity=0.418 Sum_probs=218.4
Q ss_pred eeeeeecccCCcCeEEEEEeeccCCCccEEEEecC-Cc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccE
Q 017553 23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGG-NR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF 100 (369)
Q Consensus 23 ~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~-~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~ 100 (369)
......+..|...|.+++|+| ++..+++++. ++ +++|+...+..+..+. .|...+.+++|. |++..+
T Consensus 145 ~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~--~~~~~~ 213 (466)
T COG2319 145 GKLIRTLEGHSESVTSLAFSP----DGKLLASGSSLDGTIKLWDLRTGKPLSTLA-----GHTDPVSSLAFS--PDGGLL 213 (466)
T ss_pred CeEEEEEecCcccEEEEEECC----CCCEEEecCCCCCceEEEEcCCCceEEeec-----cCCCceEEEEEc--CCcceE
Confidence 566777889999999999999 5668888874 66 9999988877776666 378899999998 888624
Q ss_pred EEEeecCCeEEEEEcCCccccc-eeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcE-EEEeeccCCCCCcEE
Q 017553 101 LVAGGINGIIRVIDVSNEKLHK-SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC-ILIFAGAGGHRNEVL 178 (369)
Q Consensus 101 l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~v~ 178 (369)
+++++.|+.|++||...+.... .+..|.... ...|+| ++..+++++.|+.+++|+...... +..+. +|...+.
T Consensus 214 ~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~---~~~~~v~ 288 (466)
T COG2319 214 IASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSP-DGSLLASGSSDGTIRLWDLRSSSSLLRTLS---GHSSSVL 288 (466)
T ss_pred EEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECC-CCCEEEEecCCCcEEEeeecCCCcEEEEEe---cCCccEE
Confidence 4445999999999988777777 688888775 448999 668888999999999999987665 44443 6899999
Q ss_pred EEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEe
Q 017553 179 SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSK 256 (369)
Q Consensus 179 ~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~ 256 (369)
++.|.| ++..+++++.|+.+.+||.......... ....|...+..+.+. +..++.+
T Consensus 289 ~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~ 346 (466)
T COG2319 289 SVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSL---------------------TLKGHEGPVSSLSFSPDGSLLVSG 346 (466)
T ss_pred EEEECC-CCCEEEEeeCCCcEEEEEcCCCceEEEe---------------------eecccCCceEEEEECCCCCEEEEe
Confidence 999999 7777777988988999988873221110 023566667777773 1455555
Q ss_pred -ecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCC
Q 017553 257 -SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQ 335 (369)
Q Consensus 257 -~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 335 (369)
..|+.+.+|+..... ........ ..+..+.+++ . ......+..++.+.+|+..... ...... .
T Consensus 347 ~~~d~~~~~~~~~~~~---------~~~~~~~~-~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~ 410 (466)
T COG2319 347 GSDDGTIRLWDLRTGK---------PLKTLEGH-SNVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGS--LLRNLD--G 410 (466)
T ss_pred ecCCCcEEeeecCCCc---------eeEEecCC-ceEEEEEECC-C-CCEEEEecCCCceEEEecccCe--eeeecc--C
Confidence 678899999988764 11111111 1177888888 5 4455558899999999999874 233322 1
Q ss_pred CccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 336 SKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 336 ~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
+...+....+++++..+++++.++.+++|++..
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 411 HTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 116889999999999999999999999999753
No 182
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.88 E-value=1.3e-20 Score=160.82 Aligned_cols=263 Identities=17% Similarity=0.176 Sum_probs=196.9
Q ss_pred eeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCce--eEEEeeeccCCcccceeEEEeeecCCCcc
Q 017553 23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGV--IAALQSYVDEDKEESFYTVSWACNVDGIP 99 (369)
Q Consensus 23 ~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~g~~ 99 (369)
..+...+ .-..+|+|++|+|. +.+++|.|..+| |.+||+..+.. ...+. .....|..++..+.|..++.+.
T Consensus 233 ~~Pe~~~-~~~s~v~~~~f~p~---~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls-~~~~sh~~~v~~vvW~~~~~~~- 306 (555)
T KOG1587|consen 233 NTPELVL-ESPSEVTCLKFCPF---DPNLLAGGCYNGQVVLWDLRKGSDTPPSGLS-ALEVSHSEPVTAVVWLQNEHNT- 306 (555)
T ss_pred CCceEEE-ecCCceeEEEeccC---CcceEEeeccCceEEEEEccCCCCCCCcccc-cccccCCcCeEEEEEeccCCCC-
Confidence 3344333 24578999999996 468999999888 99999987765 33333 3334689999999999777764
Q ss_pred EEEEeecCCeEEEEEcCCccc-c-----ceee------ccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEE--
Q 017553 100 FLVAGGINGIIRVIDVSNEKL-H-----KSFV------GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICIL-- 165 (369)
Q Consensus 100 ~l~~~~~dg~i~vwd~~~~~~-~-----~~~~------~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-- 165 (369)
-+++++.||.|..|+++.-.. . .... .....+++++|.+.+...++.|+++|.|.--+-...+...
T Consensus 307 ~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~ 386 (555)
T KOG1587|consen 307 EFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEV 386 (555)
T ss_pred ceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccc
Confidence 689999999999998764322 1 1111 1234689999999889999999999999874433222111
Q ss_pred ---EeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCc
Q 017553 166 ---IFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY 242 (369)
Q Consensus 166 ---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (369)
.......|.++|+++.++|.....|++++ |-++++|..... ..|+..+..+...
T Consensus 387 ~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~----------------------~~Pl~~~~~~~~~ 443 (555)
T KOG1587|consen 387 SYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVI----------------------ASPLLSLDSSPDY 443 (555)
T ss_pred cccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCC----------------------CCcchhhhhccce
Confidence 11122368999999999997777777777 999999998731 4677888888999
Q ss_pred eeeeeee---CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEE
Q 017553 243 VDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE 319 (369)
Q Consensus 243 v~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d 319 (369)
+++++|+ +..|+++..||.+.+||+...... ++..........+.+.|+++++ .|++|...|.+++|+
T Consensus 444 v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~-------Pv~s~~~~~~~l~~~~~s~~g~--~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 444 VTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEE-------PVLSQKVCSPALTRVRWSPNGK--LLAVGDANGTTHILK 514 (555)
T ss_pred eeeeEEcCcCceEEEEEcCCCceehhhhhccccC-------CcccccccccccceeecCCCCc--EEEEecCCCcEEEEE
Confidence 9999998 568999999999999999877543 3333333355667788888886 999999999999999
Q ss_pred ccCC
Q 017553 320 LQSS 323 (369)
Q Consensus 320 ~~~~ 323 (369)
+...
T Consensus 515 l~~~ 518 (555)
T KOG1587|consen 515 LSES 518 (555)
T ss_pred cCch
Confidence 9753
No 183
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1e-19 Score=133.56 Aligned_cols=242 Identities=13% Similarity=0.199 Sum_probs=166.5
Q ss_pred ecccCCcCeEEEEEeeccCCCccEEEEecCCcEEEEEecCCce---eEEEeeecc-----CCcccceeEEEeeecCCCcc
Q 017553 28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGV---IAALQSYVD-----EDKEESFYTVSWACNVDGIP 99 (369)
Q Consensus 28 ~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~~---~~~~~~~~~-----~~~~~~v~~~~~~~~~~g~~ 99 (369)
..++|.++|+.++|.. .+|.+|+++.|+=|...+... .+.+-.... ...-..|+++... |...
T Consensus 57 ~eqahdgpiy~~~f~d------~~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ld--P~en- 127 (325)
T KOG0649|consen 57 PEQAHDGPIYYLAFHD------DFLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLD--PSEN- 127 (325)
T ss_pred eccccCCCeeeeeeeh------hheeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEec--cCCC-
Confidence 3489999999999985 688898886699888764332 111111111 1123467777776 5554
Q ss_pred EEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccC------CC
Q 017553 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAG------GH 173 (369)
Q Consensus 100 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~------~~ 173 (369)
-++.++.|+.++-||+++|+..+++++|++.|.++.--. ....+++|++||++|+||.++++++..+.... .|
T Consensus 128 Si~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~-~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~ 206 (325)
T KOG0649|consen 128 SILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRN-ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPD 206 (325)
T ss_pred cEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecc-cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcc
Confidence 355555799999999999999999999999999999865 56789999999999999999999988876421 12
Q ss_pred -CCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeeeCcE
Q 017553 174 -RNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDF 252 (369)
Q Consensus 174 -~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 252 (369)
...|.+++.+ ...+++|+ ...+.+|.++.. .+...+ .-+..+..+.|..+.
T Consensus 207 ~g~wigala~~---edWlvCGg-Gp~lslwhLrss-----------------------e~t~vf-pipa~v~~v~F~~d~ 258 (325)
T KOG0649|consen 207 WGKWIGALAVN---EDWLVCGG-GPKLSLWHLRSS-----------------------ESTCVF-PIPARVHLVDFVDDC 258 (325)
T ss_pred cCceeEEEecc---CceEEecC-CCceeEEeccCC-----------------------CceEEE-ecccceeEeeeecce
Confidence 3357777765 35566554 578999999983 222222 235667788899999
Q ss_pred EEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEE
Q 017553 253 ILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW 318 (369)
Q Consensus 253 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~ 318 (369)
+++++..+.+.-|.+... .-...+.......+..++...- .++..++..+++.++
T Consensus 259 vl~~G~g~~v~~~~l~Gv----------l~a~ip~~s~~c~s~s~~~~p~-k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 259 VLIGGEGNHVQSYTLNGV----------LQANIPVESTACYSASWQTSPI-KFISIAGFSNKLHIL 313 (325)
T ss_pred EEEeccccceeeeeeccE----------EEEeccCCccceeeecccCCce-EEEEecccceeeeee
Confidence 999999999999988653 1222222223334444443332 355556666666665
No 184
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.88 E-value=6.5e-21 Score=154.87 Aligned_cols=265 Identities=13% Similarity=0.194 Sum_probs=187.3
Q ss_pred cCCcCeEEEEEeeccCCCccEEEEecCCcEEEEEecCCceeEEEe---eeccC-CcccceeEEEeeecCCCccEEEEeec
Q 017553 31 EGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQ---SYVDE-DKEESFYTVSWACNVDGIPFLVAGGI 106 (369)
Q Consensus 31 ~h~~~v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~~~~~~~---~~~~~-~~~~~v~~~~~~~~~~g~~~l~~~~~ 106 (369)
.|...|.|+.|+. ....+.+++++.+.+|+-........+. .+... .| +....-.- ..+...++.++.
T Consensus 12 r~~e~vc~v~w~~----~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h---~~~rs~~~-g~~~d~~~i~s~ 83 (737)
T KOG1524|consen 12 RNSEKVCCVDWSS----NEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMH---LGGRSSGG-GKGSDTLLICSN 83 (737)
T ss_pred ccceeEEeecccc----cceEEEeccCceEEEeecccchhhhhhhCCcccCCcccc---ccccccCC-CCCcceEEEEcC
Confidence 5777788999988 3566666666665555533332222221 11111 01 00000000 112237888899
Q ss_pred CCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCC
Q 017553 107 NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSD 186 (369)
Q Consensus 107 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 186 (369)
||.+.+.+ +.++..+.+..|.+.+.+-.|+| ++.-|+++++||.|++|.- +|..-.++. ....+|+|++|.|+.
T Consensus 84 DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~-dGtgLlt~GEDG~iKiWSr-sGMLRStl~---Q~~~~v~c~~W~p~S 157 (737)
T KOG1524|consen 84 DGRFVILN-KSARVERSISAHAAAISSGRWSP-DGAGLLTAGEDGVIKIWSR-SGMLRSTVV---QNEESIRCARWAPNS 157 (737)
T ss_pred CceEEEec-ccchhhhhhhhhhhhhhhcccCC-CCceeeeecCCceEEEEec-cchHHHHHh---hcCceeEEEEECCCC
Confidence 99999998 67888888999999999999999 9999999999999999984 454444444 467799999999955
Q ss_pred ceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEEE
Q 017553 187 IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVL 264 (369)
Q Consensus 187 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i 264 (369)
.+.+++.+ +.+.+=.+.. ...+.....|.+-|.++.|+ .+.+++|+.|-..++
T Consensus 158 ~~vl~c~g--~h~~IKpL~~-----------------------n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKv 212 (737)
T KOG1524|consen 158 NSIVFCQG--GHISIKPLAA-----------------------NSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKI 212 (737)
T ss_pred CceEEecC--CeEEEeeccc-----------------------ccceeEEeccCcEEEEeecCccccceeecCCceeEEe
Confidence 66555544 4455544443 23456678899999999998 789999999999999
Q ss_pred ecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEE
Q 017553 265 WEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTA 344 (369)
Q Consensus 265 ~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 344 (369)
||-... .+..-..|+-+|++++|.|+. .++.++. ++++ +. ....+.|..++
T Consensus 213 WD~~G~----------~Lf~S~~~ey~ITSva~npd~---~~~v~S~-nt~R--------------~~-~p~~GSifnls 263 (737)
T KOG1524|consen 213 WDAQGA----------NLFTSAAEEYAITSVAFNPEK---DYLLWSY-NTAR--------------FS-SPRVGSIFNLS 263 (737)
T ss_pred ecccCc----------ccccCChhccceeeeeecccc---ceeeeee-eeee--------------ec-CCCccceEEEE
Confidence 998654 466667788899999999994 5555543 2333 11 03347899999
Q ss_pred ecCCCCEEEEeecCCeEEE
Q 017553 345 MSYDGSTILSCCEDGAIWR 363 (369)
Q Consensus 345 ~s~~~~~l~s~~~dg~i~v 363 (369)
||+||..++.|+..|.+.+
T Consensus 264 WS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 264 WSADGTQATCGTSTGQLIV 282 (737)
T ss_pred EcCCCceeeccccCceEEE
Confidence 9999999999999997654
No 185
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=3.2e-19 Score=153.16 Aligned_cols=310 Identities=14% Similarity=0.152 Sum_probs=211.6
Q ss_pred ccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCC
Q 017553 30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING 108 (369)
Q Consensus 30 ~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg 108 (369)
..|.-.++|.++|| .++++|++..+| |.+|.-.. ............-|..+|.+++|+ ++|. +|++|+..|
T Consensus 202 ~~Htf~~t~~~~sp----n~~~~Aa~d~dGrI~vw~d~~-~~~~~~t~t~lHWH~~~V~~L~fS--~~G~-~LlSGG~E~ 273 (792)
T KOG1963|consen 202 VHHTFNITCVALSP----NERYLAAGDSDGRILVWRDFG-SSDDSETCTLLHWHHDEVNSLSFS--SDGA-YLLSGGREG 273 (792)
T ss_pred hhhcccceeEEecc----ccceEEEeccCCcEEEEeccc-cccccccceEEEecccccceeEEe--cCCc-eEeecccce
Confidence 36777799999999 689999999888 99998433 111111111112577899999998 9999 999999999
Q ss_pred eEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCC--------CCCcEEEE
Q 017553 109 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGG--------HRNEVLSV 180 (369)
Q Consensus 109 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~--------~~~~v~~~ 180 (369)
.+.+|.+.+++ .+-++.-.++|..+.++| ++++.+....|+.|.+....+......+..... ..+-.+.+
T Consensus 274 VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~-ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~ 351 (792)
T KOG1963|consen 274 VLVLWQLETGK-KQFLPRLGSPILHIVVSP-DSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGV 351 (792)
T ss_pred EEEEEeecCCC-cccccccCCeeEEEEEcC-CCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeE
Confidence 99999999988 566666788999999999 888888889999999998866555444442211 23446788
Q ss_pred EecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeec
Q 017553 181 DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV 258 (369)
Q Consensus 181 ~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~ 258 (369)
+++| ..+.++-.+..|.|.+||+.+.....+.......... ....+...++.+..+ |.++++.-.
T Consensus 352 ~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~------------~~~n~~v~itav~~~~~gs~maT~E~ 418 (792)
T KOG1963|consen 352 SIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSD------------GDVNIQVGITAVARSRFGSWMATLEA 418 (792)
T ss_pred EEcC-CCCceeecCCCceEEEEeccccceeeeEEEEeecccC------------CcceeEEeeeeehhhccceEEEEeee
Confidence 9999 7777888889999999999885443322211111000 000122334444443 677776532
Q ss_pred --------CC--eEEEecCCCCCCCCCCCcccee-eeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCC---
Q 017553 259 --------DN--EIVLWEPKMKEQSPGEGTADIL-QKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP--- 324 (369)
Q Consensus 259 --------d~--~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~--- 324 (369)
|| .+++|-...... ...+. .....|...+...++.+..+....++++.||.+++|-+...+
T Consensus 419 ~~d~~~~~~~e~~LKFW~~n~~~k-----t~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~ 493 (792)
T KOG1963|consen 419 RIDKFNFFDGEVSLKFWQYNPNSK-----TFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIY 493 (792)
T ss_pred eehhhhccCceEEEEEEEEcCCcc-----eeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccC
Confidence 33 477887665442 11122 223446666666777766654478899999999999984322
Q ss_pred ---ceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 325 ---PVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 325 ---~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
..........-|..++++++|+.||..|+ .+.|+.|.+||..+
T Consensus 494 k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla-~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 494 KKSSNWTCKAIGSYHKTPITALCFSQDGSLLA-VSFDDTITIWDYDT 539 (792)
T ss_pred cCccceEEeeeeccccCcccchhhcCCCcEEE-EecCCEEEEecCCC
Confidence 12222222224678999999999997665 55788999999765
No 186
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=2.7e-20 Score=142.92 Aligned_cols=291 Identities=13% Similarity=0.104 Sum_probs=189.9
Q ss_pred cccccccccccccccccccceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCC
Q 017553 3 RTAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDED 81 (369)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~ 81 (369)
++|++.+...+++..+.. .+....+++|...++.++|...+ ....+.+|+.|+ |++||++.......+.-...
T Consensus 42 ~vav~lSngsv~lyd~~t--g~~l~~fk~~~~~~N~vrf~~~d--s~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~-- 115 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGT--GQLLEEFKGPPATTNGVRFISCD--SPHGVISCSSDGTVRLWDIRSQAESARISWTQQ-- 115 (376)
T ss_pred eEEEEecCCeEEEEeccc--hhhhheecCCCCcccceEEecCC--CCCeeEEeccCCeEEEEEeecchhhhheeccCC--
Confidence 478888888888887444 66677789999999999998754 367899999998 99999998776666553221
Q ss_pred cccceeEEEeeecCCCccEEEEee----cCCeEEEEEcCCccc-ccee-eccccceEEEEecCCCCceEEEEeCCCcEEE
Q 017553 82 KEESFYTVSWACNVDGIPFLVAGG----INGIIRVIDVSNEKL-HKSF-VGHGDSINEIRTQPLKPSLVVSASKDESVRL 155 (369)
Q Consensus 82 ~~~~v~~~~~~~~~~g~~~l~~~~----~dg~i~vwd~~~~~~-~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~v 155 (369)
...+..+++.. -+++ ++++|. .+-.|.+||++..+. ++.+ ..|.+.|++++|+|.++++|++||.||-|.+
T Consensus 116 ~~~~f~~ld~n--ck~~-ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnl 192 (376)
T KOG1188|consen 116 SGTPFICLDLN--CKKN-IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNL 192 (376)
T ss_pred CCCcceEeecc--CcCC-eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEe
Confidence 12345445443 4555 788775 356799999987765 5444 4699999999999999999999999999999
Q ss_pred EEccCCcE----EEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeec
Q 017553 156 WNVQTGIC----ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQF 231 (369)
Q Consensus 156 wd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (369)
+|++.... +..+ .|...|.++.|....-..+.+-+...+..+|++..+........... .. .
T Consensus 193 fD~~~d~EeDaL~~vi----N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~---~~-------~ 258 (376)
T KOG1188|consen 193 FDTKKDNEEDALLHVI----NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDV---SA-------D 258 (376)
T ss_pred eecCCCcchhhHHHhh----cccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccc---hh-------h
Confidence 99975432 3333 37888999999862324688888999999999998542221110000 00 0
Q ss_pred ceeeeccCCCceeeeeee-CcEEEEeec-CCeEEEecCCCCCCCCCCCccceeeeccC-CCCCeeEEEEeecCCccEEEE
Q 017553 232 PVFIASVHSNYVDCNRWL-GDFILSKSV-DNEIVLWEPKMKEQSPGEGTADILQKYPV-PECDIWFIKFSCDFHYNAAAI 308 (369)
Q Consensus 232 ~~~~~~~~~~~v~~~~~~-~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~~~l~~ 308 (369)
-.........-|.+.... ...++.++. -+...++-+....... ....+..+.+ |..-|.++.|...+ .++.+
T Consensus 259 d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~---~~~~~a~l~g~~~eiVR~i~~~~~~--~~l~T 333 (376)
T KOG1188|consen 259 DLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGS---LLTEPAILQGGHEEIVRDILFDVKN--DVLYT 333 (376)
T ss_pred hHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeeccccc---ccCccccccCCcHHHHHHHhhhccc--ceeec
Confidence 000000011111222111 334444443 5666665554321111 1112333444 44556667776555 49999
Q ss_pred ecCCCeEEEEEcc
Q 017553 309 GNREGKIFVWELQ 321 (369)
Q Consensus 309 ~~~dg~i~i~d~~ 321 (369)
|++||.+.+|...
T Consensus 334 GGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 334 GGEDGLLQAWKVE 346 (376)
T ss_pred cCCCceEEEEecC
Confidence 9999999999854
No 187
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.86 E-value=2e-18 Score=134.21 Aligned_cols=237 Identities=14% Similarity=0.159 Sum_probs=174.9
Q ss_pred cceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCC--cEEEEEccCC
Q 017553 84 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDE--SVRLWNVQTG 161 (369)
Q Consensus 84 ~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg--~i~vwd~~~~ 161 (369)
..+....|. .+.. .|..|+.|| .++|+.+..............|--+-|+. .+++..+.+. .+++++++.+
T Consensus 6 ~ti~~~~~N--qd~~-~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 6 PTINFIGFN--QDST-LLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred cceeeeeec--ccee-EEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccC
Confidence 344445554 8887 889999998 47888765544322222334555666754 5666665544 4999999998
Q ss_pred cEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCC
Q 017553 162 ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN 241 (369)
Q Consensus 162 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (369)
..+..+. ...+|.++.++. +.|+++-.+ .|+|||++..+. ...+.....+..
T Consensus 79 ~~ICe~~----fpt~IL~VrmNr---~RLvV~Lee-~IyIydI~~Mkl--------------------LhTI~t~~~n~~ 130 (391)
T KOG2110|consen 79 TTICEIF----FPTSILAVRMNR---KRLVVCLEE-SIYIYDIKDMKL--------------------LHTIETTPPNPK 130 (391)
T ss_pred ceEEEEe----cCCceEEEEEcc---ceEEEEEcc-cEEEEeccccee--------------------ehhhhccCCCcc
Confidence 8888886 788999999974 345555544 499999998432 112223334566
Q ss_pred ceeeeeee--CcEEEEee--cCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCe-EE
Q 017553 242 YVDCNRWL--GDFILSKS--VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGK-IF 316 (369)
Q Consensus 242 ~v~~~~~~--~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~-i~ 316 (369)
.+.+++++ +.+++.-+ ..|.|.+||..+.+ .+..+..|++.+.+++|+++|. +||++++.|+ ||
T Consensus 131 gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~---------~v~~I~aH~~~lAalafs~~G~--llATASeKGTVIR 199 (391)
T KOG2110|consen 131 GLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQ---------PVNTINAHKGPLAALAFSPDGT--LLATASEKGTVIR 199 (391)
T ss_pred ceEeeccCCCCceEEecCCCCCceEEEEEcccce---------eeeEEEecCCceeEEEECCCCC--EEEEeccCceEEE
Confidence 67777776 34666433 36889999998776 6888889999999999999996 9999999998 79
Q ss_pred EEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 317 VWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 317 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
||.+.++ ..+.++....-...|.+++|+|++++|++.|..++|+||.++.
T Consensus 200 Vf~v~~G--~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 200 VFSVPEG--QKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred EEEcCCc--cEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 9999998 4566666434456799999999999999999999999999864
No 188
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.86 E-value=2.3e-18 Score=143.81 Aligned_cols=272 Identities=13% Similarity=0.118 Sum_probs=164.4
Q ss_pred cCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEe-ecCCeEEEEEcCC-ccc--cceeeccccc
Q 017553 56 GGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG-GINGIIRVIDVSN-EKL--HKSFVGHGDS 130 (369)
Q Consensus 56 ~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~-~~dg~i~vwd~~~-~~~--~~~~~~~~~~ 130 (369)
..++ |.+|++.+...+..++... ..+....++++ |+++ +|+++ ..++.|.+|++.. ++. +.... ..+.
T Consensus 9 ~~~~~I~~~~~~~~g~l~~~~~~~---~~~~~~~l~~s--pd~~-~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~ 81 (330)
T PRK11028 9 PESQQIHVWNLNHEGALTLLQVVD---VPGQVQPMVIS--PDKR-HLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGS 81 (330)
T ss_pred CCCCCEEEEEECCCCceeeeeEEe---cCCCCccEEEC--CCCC-EEEEEECCCCcEEEEEECCCCceEEeeeec-CCCC
Confidence 4444 9999996544444444331 22344556666 9998 66555 4578899999863 332 22222 2345
Q ss_pred eEEEEecCCCCceEEEEe-CCCcEEEEEccCC-c---EEEEeeccCCCCCcEEEEEecCCCceEE-EEEeeCCcEEEEEc
Q 017553 131 INEIRTQPLKPSLVVSAS-KDESVRLWNVQTG-I---CILIFAGAGGHRNEVLSVDFHPSDIYRI-ASCGMDNTVKIWSM 204 (369)
Q Consensus 131 v~~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~-~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~d~~v~i~d~ 204 (369)
...++|+| +++.|++++ .++.|.+|++.+. . .+..+. +......++++| +++++ ++...++.|.+||+
T Consensus 82 p~~i~~~~-~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~----~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~ 155 (330)
T PRK11028 82 PTHISTDH-QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE----GLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTL 155 (330)
T ss_pred ceEEEECC-CCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc----CCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEE
Confidence 67899999 777777665 4889999999743 2 222222 334567788999 66555 55566799999999
Q ss_pred cCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeec-CCeEEEecCCCCCCCCCCCccce
Q 017553 205 KEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV-DNEIVLWEPKMKEQSPGEGTADI 281 (369)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~ 281 (369)
.+........ .... ... .......+.|+ +++++++.. ++.|.+|++..... ....
T Consensus 156 ~~~g~l~~~~---------------~~~~-~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~-----~~~~ 213 (330)
T PRK11028 156 SDDGHLVAQE---------------PAEV-TTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHG-----EIEC 213 (330)
T ss_pred CCCCcccccC---------------CCce-ecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCC-----CEEE
Confidence 8622110000 0000 000 11223456665 678877766 89999999974311 0011
Q ss_pred eeeccC------CCCCeeEEEEeecCCccEEEEec-CCCeEEEEEccCCCc--eeEEEeecCCCccceEEEEecCCCCEE
Q 017553 282 LQKYPV------PECDIWFIKFSCDFHYNAAAIGN-REGKIFVWELQSSPP--VLIARLSHAQSKSPIRQTAMSYDGSTI 352 (369)
Q Consensus 282 ~~~~~~------~~~~i~~~~~s~~~~~~~l~~~~-~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l 352 (369)
+..+.. .......+.++|+++ +++++. .++.|.+|++..... ..+..... ......+.++|||++|
T Consensus 214 ~~~~~~~p~~~~~~~~~~~i~~~pdg~--~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~---~~~p~~~~~~~dg~~l 288 (330)
T PRK11028 214 VQTLDMMPADFSDTRWAADIHITPDGR--HLYACDRTASLISVFSVSEDGSVLSFEGHQPT---ETQPRGFNIDHSGKYL 288 (330)
T ss_pred EEEEecCCCcCCCCccceeEEECCCCC--EEEEecCCCCeEEEEEEeCCCCeEEEeEEEec---cccCCceEECCCCCEE
Confidence 222211 111233588999997 666654 578999999975432 22222221 1345678999999999
Q ss_pred EEeec-CCeEEEEecC
Q 017553 353 LSCCE-DGAIWRWDAI 367 (369)
Q Consensus 353 ~s~~~-dg~i~vw~~~ 367 (369)
++++. ++.|.+|++.
T Consensus 289 ~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 289 IAAGQKSHHISVYEID 304 (330)
T ss_pred EEEEccCCcEEEEEEc
Confidence 98775 8899999875
No 189
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.86 E-value=1.9e-17 Score=128.85 Aligned_cols=281 Identities=12% Similarity=0.168 Sum_probs=201.2
Q ss_pred CcCeEEEEEeeccCCCccEEEEecCCcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecC--CeE
Q 017553 33 KRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN--GII 110 (369)
Q Consensus 33 ~~~v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~d--g~i 110 (369)
...++.+.|+. +...|..|+.++.++|+...-..... ...+.+.-+..-|+.. ++|..+.+ ..+
T Consensus 5 ~~ti~~~~~Nq----d~~~lsvGs~~Gyk~~~~~~~~k~~~-------~~~~~~~IvEmLFSSS---LvaiV~~~qpr~L 70 (391)
T KOG2110|consen 5 KPTINFIGFNQ----DSTLLSVGSKDGYKIFSCSPFEKCFS-------KDTEGVSIVEMLFSSS---LVAIVSIKQPRKL 70 (391)
T ss_pred Ccceeeeeecc----ceeEEEccCCCceeEEecCchHHhhc-------ccCCCeEEEEeecccc---eeEEEecCCCceE
Confidence 34567777887 57899999999999999776544111 2334444455554432 55555443 458
Q ss_pred EEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEE
Q 017553 111 RVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRI 190 (369)
Q Consensus 111 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 190 (369)
++.+++.+..+..+. ...+|.++.++. +.|+.+-.+ .|+|||+++.+.+.++...+.+...+.++.+++ ++.++
T Consensus 71 kv~~~Kk~~~ICe~~-fpt~IL~VrmNr---~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~-~n~yl 144 (391)
T KOG2110|consen 71 KVVHFKKKTTICEIF-FPTSILAVRMNR---KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNN-ANCYL 144 (391)
T ss_pred EEEEcccCceEEEEe-cCCceEEEEEcc---ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCC-CCceE
Confidence 999988887777766 567899999975 456666654 499999999999999886555667788888876 55666
Q ss_pred EEE--eeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCe-EEEe
Q 017553 191 ASC--GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNE-IVLW 265 (369)
Q Consensus 191 ~~~--~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~-i~i~ 265 (369)
+-- ...|.|.+||..+ ..++..+..|.+.+.+++|+ |.+|++++..|+ ||+|
T Consensus 145 Ayp~s~t~GdV~l~d~~n-----------------------l~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf 201 (391)
T KOG2110|consen 145 AYPGSTTSGDVVLFDTIN-----------------------LQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVF 201 (391)
T ss_pred EecCCCCCceEEEEEccc-----------------------ceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEE
Confidence 543 2358899999998 56788889999999999998 899999999998 8999
Q ss_pred cCCCCCCCCCCCccceeeeccCC--CCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCce-----------------
Q 017553 266 EPKMKEQSPGEGTADILQKYPVP--ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPV----------------- 326 (369)
Q Consensus 266 d~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~----------------- 326 (369)
.+.+++. +.++.-. ...|.+++|+|+++ +|++.+..++|++|.++.....
T Consensus 202 ~v~~G~k---------l~eFRRG~~~~~IySL~Fs~ds~--~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk 270 (391)
T KOG2110|consen 202 SVPEGQK---------LYEFRRGTYPVSIYSLSFSPDSQ--FLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSK 270 (391)
T ss_pred EcCCccE---------eeeeeCCceeeEEEEEEECCCCC--eEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhh
Confidence 9998873 3333321 35688999999997 9999999999999988642100
Q ss_pred ------------------eE--EEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 327 ------------------LI--ARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 327 ------------------~~--~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
.. .+++..+ ...+..+.-.+...++..++.||.++.|.+..
T Consensus 271 ~~~sylps~V~~~~~~~R~FAt~~l~~s~-~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~ 331 (391)
T KOG2110|consen 271 AATSYLPSQVSSVLDQSRKFATAKLPESG-RKNICSLSSIQKIPRVLVASYDGHLYSYRLPP 331 (391)
T ss_pred hhhhhcchhhhhhhhhccceeEEEccCCC-ccceEEeeccCCCCEEEEEEcCCeEEEEEcCC
Confidence 00 0111000 01232233235678899999999999999865
No 190
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.85 E-value=4.7e-20 Score=153.88 Aligned_cols=232 Identities=19% Similarity=0.293 Sum_probs=177.6
Q ss_pred ceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEE
Q 017553 85 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICI 164 (369)
Q Consensus 85 ~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 164 (369)
.|+.++|. |||.+++++++ ..+.+||.++|..++++++|.+.|.+++|+. ++..+++|+.|..|.+|+.+-...
T Consensus 14 ci~d~afk--PDGsqL~lAAg--~rlliyD~ndG~llqtLKgHKDtVycVAys~-dGkrFASG~aDK~VI~W~~klEG~- 87 (1081)
T KOG1538|consen 14 CINDIAFK--PDGTQLILAAG--SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAK-DGKRFASGSADKSVIIWTSKLEGI- 87 (1081)
T ss_pred chheeEEC--CCCceEEEecC--CEEEEEeCCCcccccccccccceEEEEEEcc-CCceeccCCCceeEEEecccccce-
Confidence 78889998 99994444443 4799999999999999999999999999999 999999999999999998764333
Q ss_pred EEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCcee
Q 017553 165 LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD 244 (369)
Q Consensus 165 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 244 (369)
..+ .|.+.|.|+.|+| -...|++++.. ..-+|..... .+.. ......+.
T Consensus 88 LkY----SH~D~IQCMsFNP-~~h~LasCsLs-dFglWS~~qK------------------------~V~K-~kss~R~~ 136 (1081)
T KOG1538|consen 88 LKY----SHNDAIQCMSFNP-ITHQLASCSLS-DFGLWSPEQK------------------------SVSK-HKSSSRII 136 (1081)
T ss_pred eee----ccCCeeeEeecCc-hHHHhhhcchh-hccccChhhh------------------------hHHh-hhhheeEE
Confidence 333 4999999999999 77888888754 4667876651 1111 12345677
Q ss_pred eeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCC---ccEEEEecCCCeEEEEE
Q 017553 245 CNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFH---YNAAAIGNREGKIFVWE 319 (369)
Q Consensus 245 ~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~---~~~l~~~~~dg~i~i~d 319 (369)
+.+|. |++++.|-.+|+|.+-+-...+ ...+.+..+...+|++++|+|... ...+++.....++.+|.
T Consensus 137 ~CsWtnDGqylalG~~nGTIsiRNk~gEe-------k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~ 209 (1081)
T KOG1538|consen 137 CCSWTNDGQYLALGMFNGTISIRNKNGEE-------KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQ 209 (1081)
T ss_pred EeeecCCCcEEEEeccCceEEeecCCCCc-------ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEE
Confidence 88886 9999999999999998644332 124555566788999999999743 34788888888888888
Q ss_pred ccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEe
Q 017553 320 LQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 365 (369)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~ 365 (369)
+..........+. -...|+.+.++|.++..|+.|+.+.+|-
T Consensus 210 LsG~~Igk~r~L~-----FdP~CisYf~NGEy~LiGGsdk~L~~fT 250 (1081)
T KOG1538|consen 210 LSGKQIGKDRALN-----FDPCCISYFTNGEYILLGGSDKQLSLFT 250 (1081)
T ss_pred ecceeecccccCC-----CCchhheeccCCcEEEEccCCCceEEEe
Confidence 8764211122222 3456899999999999999999998875
No 191
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.85 E-value=4.5e-19 Score=139.31 Aligned_cols=260 Identities=16% Similarity=0.174 Sum_probs=179.4
Q ss_pred ceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEec--------C-----CceeEEEeeeccCCccccee
Q 017553 22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCL--------E-----GGVIAALQSYVDEDKEESFY 87 (369)
Q Consensus 22 ~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~--------~-----~~~~~~~~~~~~~~~~~~v~ 87 (369)
..+....|..|+.+|+++.|+| +|++||+|++++ |.+|... + .+....... ...|...++
T Consensus 54 ~V~y~s~Ls~H~~aVN~vRf~p----~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~--lr~h~~diy 127 (434)
T KOG1009|consen 54 KVEYLSSLSRHTRAVNVVRFSP----DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKV--LRGHRDDIY 127 (434)
T ss_pred eEEEeecccCCcceeEEEEEcC----CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEE--ecccccchh
Confidence 5667778899999999999999 799999999999 9999865 2 111111111 225889999
Q ss_pred EEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEe
Q 017553 88 TVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIF 167 (369)
Q Consensus 88 ~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 167 (369)
.++|+ |++. ++++++.|..+++||+..|+....+..|...+..++|.| -++++++-+.|...+.+.+...+.+...
T Consensus 128 dL~Ws--~d~~-~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDp-l~qyv~s~s~dr~~~~~~~~~~~~~~~~ 203 (434)
T KOG1009|consen 128 DLAWS--PDSN-FLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDP-LNQYVASKSSDRHPEGFSAKLKQVIKRH 203 (434)
T ss_pred hhhcc--CCCc-eeeeeeccceEEEEEeccceeEeeccccccccceeecch-hhhhhhhhccCcccceeeeeeeeeeeee
Confidence 99999 9998 999999999999999999999999999999999999999 8889999998887777776654433332
Q ss_pred ec-----cC-----------CCCC----cEEEEEecCCCceEEEEEee----CCcE-----EEEEccCceeeeeeeeecc
Q 017553 168 AG-----AG-----------GHRN----EVLSVDFHPSDIYRIASCGM----DNTV-----KIWSMKEFWTYVEKSFTWT 218 (369)
Q Consensus 168 ~~-----~~-----------~~~~----~v~~~~~~~~~~~~l~~~~~----d~~v-----~i~d~~~~~~~~~~~~~~~ 218 (369)
.. .. -|.. -...++|+| ++.++++... .+.+ ++|+-..
T Consensus 204 ~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTP-dG~llvtPag~~~~g~~~~~n~tYvfsrk~------------ 270 (434)
T KOG1009|consen 204 GLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTP-DGSLLVTPAGLFKVGGGVFRNTSYVFSRKD------------ 270 (434)
T ss_pred eeeEeeecccCCCCcceeeeeecCchhhhhhhcccCC-CCcEEEcccceeeeCCceeeceeEeecccc------------
Confidence 20 00 1211 124467888 8888877532 1222 2222111
Q ss_pred CCCCCCCCceeecceeeeccCCCceeeeeee-------------------CcEEEEeecCCeEEEecCCCCCCCCCCCcc
Q 017553 219 DLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-------------------GDFILSKSVDNEIVLWEPKMKEQSPGEGTA 279 (369)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-------------------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 279 (369)
...|...+.....+...+.++ -+.++.....+.+++||..+..+
T Consensus 271 ----------l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P------- 333 (434)
T KOG1009|consen 271 ----------LKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEP------- 333 (434)
T ss_pred ----------ccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccc-------
Confidence 112222222222222222221 12333334456899999988663
Q ss_pred ceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCC
Q 017553 280 DILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP 324 (369)
Q Consensus 280 ~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~ 324 (369)
....-..|-..++.++|+++|. +|+..+.||...+.-++..+
T Consensus 334 -~~~v~nihy~~iTDiaws~dg~--~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 334 -LAVVDNIHYSAITDIAWSDDGS--VLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred -eEEEeeeeeeeecceeecCCCc--EEEEeccCCceEEEEEcchh
Confidence 2333345667899999999996 89999999998888777654
No 192
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.85 E-value=1.9e-18 Score=131.83 Aligned_cols=225 Identities=15% Similarity=0.115 Sum_probs=167.1
Q ss_pred cCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCe
Q 017553 31 EGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGI 109 (369)
Q Consensus 31 ~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~ 109 (369)
--..+|+|.+|++ ++..+|.+-.+. |.||.............+ ..|...|+.++|+ |... .|++++.|..
T Consensus 8 ~~~~pitchAwn~----drt~iAv~~~~~evhiy~~~~~~~w~~~htl--s~Hd~~vtgvdWa--p~sn-rIvtcs~drn 78 (361)
T KOG1523|consen 8 RLLEPITCHAWNS----DRTQIAVSPNNHEVHIYSMLGADLWEPAHTL--SEHDKIVTGVDWA--PKSN-RIVTCSHDRN 78 (361)
T ss_pred eccCceeeeeecC----CCceEEeccCCceEEEEEecCCCCceeceeh--hhhCcceeEEeec--CCCC-ceeEccCCCC
Confidence 3457899999999 688999988887 999998776644443332 2688999999999 8887 8999999999
Q ss_pred EEEEEcC-Cc--cccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeec-cCCCCCcEEEEEecCC
Q 017553 110 IRVIDVS-NE--KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAG-AGGHRNEVLSVDFHPS 185 (369)
Q Consensus 110 i~vwd~~-~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~ 185 (369)
-++|... .+ ++.-.+..++...+++.|+| .++.|++|+....|.||-++..+--..-+. ...+...|+++.|+|
T Consensus 79 ayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp- 156 (361)
T KOG1523|consen 79 AYVWTQPSGGTWKPTLVLLRINRAATCVKWSP-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP- 156 (361)
T ss_pred ccccccCCCCeeccceeEEEeccceeeEeecC-cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccC-
Confidence 9999983 33 44556677999999999999 899999999999999998876554322220 114677899999999
Q ss_pred CceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEE
Q 017553 186 DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIV 263 (369)
Q Consensus 186 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~ 263 (369)
++-+|++|+.|+..+++..--.. ++..........+. .....+.......+.+..+.|+ |..|+-.+.|..+.
T Consensus 157 nnVLlaaGs~D~k~rVfSayIK~--Vdekpap~pWgsk~---PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~ 231 (361)
T KOG1523|consen 157 NNVLLAAGSTDGKCRVFSAYIKG--VDEKPAPTPWGSKM---PFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVS 231 (361)
T ss_pred CcceecccccCcceeEEEEeeec--cccCCCCCCCccCC---cHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceE
Confidence 99999999999999998753311 11111111111111 1122233333567889999998 99999999999999
Q ss_pred EecCCCCC
Q 017553 264 LWEPKMKE 271 (369)
Q Consensus 264 i~d~~~~~ 271 (369)
+-|.....
T Consensus 232 ~~da~~p~ 239 (361)
T KOG1523|consen 232 FVDAAGPS 239 (361)
T ss_pred EeecCCCc
Confidence 99987764
No 193
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=2.5e-19 Score=140.42 Aligned_cols=252 Identities=13% Similarity=0.149 Sum_probs=183.4
Q ss_pred CcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCC------ccccceeec-cccceEEEEecCCCCceEEEEeCCCcE
Q 017553 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN------EKLHKSFVG-HGDSINEIRTQPLKPSLVVSASKDESV 153 (369)
Q Consensus 81 ~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~------~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~i 153 (369)
.|.+.|+++.|+ .+++ +|++|+.|..+++|+++. .+++..... |...|.|++|.. .+..+++|+.+++|
T Consensus 54 ~H~GCiNAlqFS--~N~~-~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~-~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 54 EHTGCINALQFS--HNDR-FLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL-ENRFLYSGERWGTV 129 (609)
T ss_pred hhccccceeeec--cCCe-EEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-CCeeEecCCCccee
Confidence 578899999988 7788 999999999999999854 344544443 558999999998 88999999999999
Q ss_pred EEEEccCCcEEEEeeccCCCCC---cEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceee
Q 017553 154 RLWNVQTGICILIFAGAGGHRN---EVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQ 230 (369)
Q Consensus 154 ~vwd~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (369)
.+-|+++.+.+..+. |.. .|+.+..+| ..+.|++.+.++.|.+||++.....
T Consensus 130 I~HDiEt~qsi~V~~----~~~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~-------------------- 184 (609)
T KOG4227|consen 130 IKHDIETKQSIYVAN----ENNNRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNP-------------------- 184 (609)
T ss_pred Eeeecccceeeeeec----ccCcccceeecccCC-CCceEEEEecCceEEEEeccCCCCC--------------------
Confidence 999999999888775 554 899999999 6888999999999999999983211
Q ss_pred cceeeeccCCCceeeeeee---CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEE
Q 017553 231 FPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAA 307 (369)
Q Consensus 231 ~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~ 307 (369)
...............+.|+ +.+|++.+..+-+.+||.+.......... ....++........+.|+|+|. .+.
T Consensus 185 ~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~--~~~~L~~~~~~~M~~~~~~~G~--Q~m 260 (609)
T KOG4227|consen 185 ISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRS--MFKGLPQENTEWMGSLWSPSGN--QFM 260 (609)
T ss_pred CceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhh--ccccCcccchhhhheeeCCCCC--eeh
Confidence 1122233344455666666 67899999999999999998754211100 1111222222345678999996 565
Q ss_pred EecCCCeEEEEEccCCCceeEEEeecCC----CccceEEEEecCCCCEEEEeecCCeEEEEecC
Q 017553 308 IGNREGKIFVWELQSSPPVLIARLSHAQ----SKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 308 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 367 (369)
+--....-.+||+.+..+ .+.++.+.. ....+.+++|..|- .+++|+.+=.|++|.+.
T Consensus 261 siRR~~~P~~~D~~S~R~-~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP 322 (609)
T KOG4227|consen 261 SIRRGKCPLYFDFISQRC-FVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLP 322 (609)
T ss_pred hhhccCCCEEeeeecccc-eeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecC
Confidence 555555667889887543 333333221 12357788888664 59999999999999975
No 194
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.85 E-value=1e-18 Score=155.19 Aligned_cols=313 Identities=13% Similarity=0.123 Sum_probs=200.5
Q ss_pred ccceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCce----eEEEeeeccCCcccceeEEEeeec
Q 017553 20 KREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGV----IAALQSYVDEDKEESFYTVSWACN 94 (369)
Q Consensus 20 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~ 94 (369)
...-.++..|..|...|..++.++. ++.+|++|+.|+ |++|+..+-.. .+....+. ..+..+.++..+
T Consensus 1035 ~p~G~lVAhL~Ehs~~v~k~a~s~~---~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys--~~~sr~~~vt~~-- 1107 (1431)
T KOG1240|consen 1035 NPRGILVAHLHEHSSAVIKLAVSSE---HTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYS--PEGSRVEKVTMC-- 1107 (1431)
T ss_pred CccceEeehhhhccccccceeecCC---CCceEEEecCCceEEEeeehhhhcCcceeeeeEEEe--ccCCceEEEEec--
Confidence 3455677888999999999999884 468999999999 99999874322 12222221 256678888888
Q ss_pred CCCccEEEEeecCCeEEEEEcCCcc--c-----ccee--eccccceEEEEecCCCCc-eEEEEeCCCcEEEEEccCCcEE
Q 017553 95 VDGIPFLVAGGINGIIRVIDVSNEK--L-----HKSF--VGHGDSINEIRTQPLKPS-LVVSASKDESVRLWNVQTGICI 164 (369)
Q Consensus 95 ~~g~~~l~~~~~dg~i~vwd~~~~~--~-----~~~~--~~~~~~v~~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~ 164 (369)
+.|. .+|+++.||.|++.+++... . .+.. ......|..-+|...... .++.+..-+.|..||++.....
T Consensus 1108 ~~~~-~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~ 1186 (1431)
T KOG1240|consen 1108 GNGD-QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA 1186 (1431)
T ss_pred cCCC-eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhH
Confidence 7787 89999999999999987621 1 1111 112223344445443444 7888888899999999988777
Q ss_pred EEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeee-ccCCCce
Q 017553 165 LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA-SVHSNYV 243 (369)
Q Consensus 165 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v 243 (369)
+.++... ..+.|++++.+| .++.+++|...|.+.+||+|=. .++... ..+..++
T Consensus 1187 w~lk~~~-~hG~vTSi~idp-~~~WlviGts~G~l~lWDLRF~-----------------------~~i~sw~~P~~~~i 1241 (1431)
T KOG1240|consen 1187 WRLKNQL-RHGLVTSIVIDP-WCNWLVIGTSRGQLVLWDLRFR-----------------------VPILSWEHPARAPI 1241 (1431)
T ss_pred HhhhcCc-cccceeEEEecC-CceEEEEecCCceEEEEEeecC-----------------------ceeecccCcccCCc
Confidence 7666332 347899999999 8899999999999999999972 222211 1223445
Q ss_pred eeeeee---C--cEEEEee--cCCeEEEecCCCCCCCCCCCcc---ceeeec-cCC----CCCeeEEEEeecCCccEEEE
Q 017553 244 DCNRWL---G--DFILSKS--VDNEIVLWEPKMKEQSPGEGTA---DILQKY-PVP----ECDIWFIKFSCDFHYNAAAI 308 (369)
Q Consensus 244 ~~~~~~---~--~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~---~~~~~~-~~~----~~~i~~~~~s~~~~~~~l~~ 308 (369)
..+..+ + ...++++ ..+.|.+|++.++......... ..+... +.. ...+..+.........++.+
T Consensus 1242 ~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~lt 1321 (1431)
T KOG1240|consen 1242 RHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLT 1321 (1431)
T ss_pred ceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeee
Confidence 555443 3 4455444 4677999999888542111000 001000 000 11111111111111238999
Q ss_pred ecCCCeEEEEEccCCCce----------------------------------------------eEEEe------ecCCC
Q 017553 309 GNREGKIFVWELQSSPPV----------------------------------------------LIARL------SHAQS 336 (369)
Q Consensus 309 ~~~dg~i~i~d~~~~~~~----------------------------------------------~~~~~------~~~~~ 336 (369)
|+.|..|+.||....+.. ....+ ....|
T Consensus 1322 ggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H 1401 (1431)
T KOG1240|consen 1322 GGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYH 1401 (1431)
T ss_pred cCCccceeeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccc
Confidence 999999999997532110 00000 01246
Q ss_pred ccceEEEEecCC-CCEEEEeecCCeEEEEe
Q 017553 337 KSPIRQTAMSYD-GSTILSCCEDGAIWRWD 365 (369)
Q Consensus 337 ~~~v~~~~~s~~-~~~l~s~~~dg~i~vw~ 365 (369)
..+|++|++... ..+|++++.||.|+||.
T Consensus 1402 ~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1402 HDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred cchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 678999888754 46899999999999994
No 195
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.84 E-value=2.1e-19 Score=149.16 Aligned_cols=227 Identities=18% Similarity=0.272 Sum_probs=166.2
Q ss_pred eecCCeEEEEEcCCcc-c----cceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCc-------EEEEeeccC
Q 017553 104 GGINGIIRVIDVSNEK-L----HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI-------CILIFAGAG 171 (369)
Q Consensus 104 ~~~dg~i~vwd~~~~~-~----~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-------~~~~~~~~~ 171 (369)
.+..|.|-||+++..- + +-.+. ....|+.+.|.|.+...|+.++.||.|++|.+..+. +...+.
T Consensus 599 ~g~gG~iai~el~~PGrLPDgv~p~l~-Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt--- 674 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDGVMPGLF-NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILT--- 674 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCcccccccc-cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeee---
Confidence 4557899999997542 2 11222 456899999999999999999999999999997543 334444
Q ss_pred CCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--
Q 017553 172 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-- 249 (369)
Q Consensus 172 ~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-- 249 (369)
.|...|+++.|+|-..+.|++++.|-+|++||+++ ......+.+|.+.|..++|+
T Consensus 675 ~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~-----------------------~~~~~~l~gHtdqIf~~AWSpd 731 (1012)
T KOG1445|consen 675 IHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN-----------------------AKLYSRLVGHTDQIFGIAWSPD 731 (1012)
T ss_pred cccceEEEEEecchhhhHhhhhhccceeeeeehhh-----------------------hhhhheeccCcCceeEEEECCC
Confidence 79999999999998889999999999999999999 34455788999999999998
Q ss_pred CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCC-CCCeeEEEEeecCCccEEEEecC----CCeEEEEEccCCC
Q 017553 250 GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP-ECDIWFIKFSCDFHYNAAAIGNR----EGKIFVWELQSSP 324 (369)
Q Consensus 250 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~~~~~~l~~~~~----dg~i~i~d~~~~~ 324 (369)
|+.+++.+.||+|++|+.+..+. ++++-++. ...--.+.|..+++ ++++.+. ..+|.+||..+-.
T Consensus 732 Gr~~AtVcKDg~~rVy~Prs~e~--------pv~Eg~gpvgtRgARi~wacdgr--~viv~Gfdk~SeRQv~~Y~Aq~l~ 801 (1012)
T KOG1445|consen 732 GRRIATVCKDGTLRVYEPRSREQ--------PVYEGKGPVGTRGARILWACDGR--IVIVVGFDKSSERQVQMYDAQTLD 801 (1012)
T ss_pred CcceeeeecCceEEEeCCCCCCC--------ccccCCCCccCcceeEEEEecCc--EEEEecccccchhhhhhhhhhhcc
Confidence 89999999999999999998875 33333322 13345678999997 5555443 4678999987654
Q ss_pred ceeEEEeecCCCccceEEEEecCCC-CEEEEeecCCeEEEEecCC
Q 017553 325 PVLIARLSHAQSKSPIRQTAMSYDG-STILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 325 ~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~vw~~~~ 368 (369)
...+........ -.+.--.+.+|. -++++|-.|..|++|++-.
T Consensus 802 ~~pl~t~~lDva-ps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~ 845 (1012)
T KOG1445|consen 802 LRPLYTQVLDVA-PSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIY 845 (1012)
T ss_pred CCcceeeeeccc-CccccccccCCCceEEEecCCCceEEEEEecC
Confidence 322222211010 111112334454 4677888999999998754
No 196
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.7e-19 Score=147.17 Aligned_cols=231 Identities=16% Similarity=0.170 Sum_probs=168.8
Q ss_pred ccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCC-CceEEEEEeeCCc
Q 017553 120 LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS-DIYRIASCGMDNT 198 (369)
Q Consensus 120 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~d~~ 198 (369)
+.+.+.+|++.|++++|+. ++.+|++|+.|-.+.|||.-..+.+..+.. +|...|.++.|-|. +..++++|..|..
T Consensus 42 lE~eL~GH~GCVN~LeWn~-dG~lL~SGSDD~r~ivWd~~~~KllhsI~T--gHtaNIFsvKFvP~tnnriv~sgAgDk~ 118 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNA-DGELLASGSDDTRLIVWDPFEYKLLHSIST--GHTANIFSVKFVPYTNNRIVLSGAGDKL 118 (758)
T ss_pred hhhhhccccceecceeecC-CCCEEeecCCcceEEeecchhcceeeeeec--ccccceeEEeeeccCCCeEEEeccCcce
Confidence 3467889999999999999 999999999999999999998899988887 89999999999984 4577899999999
Q ss_pred EEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee---CcEEEEeecCCeEEEecCCCCCCCCC
Q 017553 199 VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPG 275 (369)
Q Consensus 199 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~ 275 (369)
|+++|+...+.... ......+......|...|..++.. +..+.+++.||+|+-+|++.......
T Consensus 119 i~lfdl~~~~~~~~-------------d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p 185 (758)
T KOG1310|consen 119 IKLFDLDSSKEGGM-------------DHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNP 185 (758)
T ss_pred EEEEeccccccccc-------------ccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCc
Confidence 99999986221110 111133455667788888888775 57999999999999999998643221
Q ss_pred C-CccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCC------------c----eeEEEeecCCCc-
Q 017553 276 E-GTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP------------P----VLIARLSHAQSK- 337 (369)
Q Consensus 276 ~-~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~------------~----~~~~~~~~~~~~- 337 (369)
. .....+..+...--...++..+|... .+|++|+.|-..++||.+... + ..+..+. ++|.
T Consensus 186 ~~~~~~~l~ny~~~lielk~ltisp~rp-~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~-p~hlk 263 (758)
T KOG1310|consen 186 DEDCPSILVNYNPQLIELKCLTISPSRP-YYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFS-PGHLK 263 (758)
T ss_pred cccccHHHHHhchhhheeeeeeecCCCC-ceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheec-Ccccc
Confidence 1 12222333333334567899999887 599999999999999943210 0 0111111 1111
Q ss_pred ----------cceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 338 ----------SPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 338 ----------~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
..++-+.|+|+|.-|+..-....|+++|+..
T Consensus 264 n~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~ 304 (758)
T KOG1310|consen 264 NSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNE 304 (758)
T ss_pred CcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecC
Confidence 1257789999997666555556799999864
No 197
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=3.4e-19 Score=140.75 Aligned_cols=206 Identities=19% Similarity=0.205 Sum_probs=145.0
Q ss_pred EEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEe
Q 017553 88 TVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIF 167 (369)
Q Consensus 88 ~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 167 (369)
++++. ++|. .|++|+.||++|+|++.+...+.....|.+.|.++.|+| ++..|++-+.| ..+||+.+++.++...
T Consensus 149 ~vaf~--~~gs-~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 149 VVAFN--GDGS-KLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred EEEEc--CCCC-EeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhc
Confidence 35554 8998 999999999999999988888888888999999999999 99999999999 9999999999766655
Q ss_pred eccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeee
Q 017553 168 AGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNR 247 (369)
Q Consensus 168 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 247 (369)
.. .........+.|+. ++. . -.+++......
T Consensus 224 t~-~~k~~~~~~cRF~~-d~~------~-~~l~laa~~~~---------------------------------------- 254 (398)
T KOG0771|consen 224 TP-FSKDEMFSSCRFSV-DNA------Q-ETLRLAASQFP---------------------------------------- 254 (398)
T ss_pred CC-cccchhhhhceecc-cCC------C-ceEEEEEecCC----------------------------------------
Confidence 42 12333455566665 330 0 12333332220
Q ss_pred eeCcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCcee
Q 017553 248 WLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVL 327 (369)
Q Consensus 248 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 327 (369)
+..+.. -.+.+|+-...- ...........|.+++.+++|+ +++.|+.||.|-|++..+.+ .
T Consensus 255 --~~~v~~----~~~~~w~~~~~l---------~~~~~~~~~~siSsl~VS~dGk--f~AlGT~dGsVai~~~~~lq--~ 315 (398)
T KOG0771|consen 255 --GGGVRL----CDISLWSGSNFL---------RLRKKIKRFKSISSLAVSDDGK--FLALGTMDGSVAIYDAKSLQ--R 315 (398)
T ss_pred --CCceeE----EEeeeecccccc---------chhhhhhccCcceeEEEcCCCc--EEEEeccCCcEEEEEeceee--e
Confidence 000000 012223322100 1111122235789999999997 99999999999999998874 2
Q ss_pred EEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecC
Q 017553 328 IARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 328 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 367 (369)
+... ...|...|+.+.|+||.+++++.+.|..+.|..+.
T Consensus 316 ~~~v-k~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 316 LQYV-KEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred eEee-hhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 2222 23788899999999999999999999988887664
No 198
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.83 E-value=7.4e-21 Score=162.16 Aligned_cols=236 Identities=21% Similarity=0.382 Sum_probs=180.1
Q ss_pred CcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccC
Q 017553 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 160 (369)
Q Consensus 81 ~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 160 (369)
.|...|+|..|. ..|. ++++|+.|..++||.++++.+....+||.+.|+.++.+. ++.++++++.|..|++|.+..
T Consensus 188 gH~naVyca~fD--rtg~-~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~-~n~~iaaaS~D~vIrvWrl~~ 263 (1113)
T KOG0644|consen 188 GHRNAVYCAIFD--RTGR-YIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSS-NNTMIAAASNDKVIRVWRLPD 263 (1113)
T ss_pred hhhhheeeeeec--cccc-eEeecCccceeeeeeccchhhhccCCCCccccchhccch-hhhhhhhcccCceEEEEecCC
Confidence 577889999888 8898 999999999999999999999999999999999999998 888999999999999999999
Q ss_pred CcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCC
Q 017553 161 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 240 (369)
Q Consensus 161 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (369)
+.++..+. +|++.|++++|+| ..+.+.||++++||.+-. .......+..+ ...
T Consensus 264 ~~pvsvLr---ghtgavtaiafsP-----~~sss~dgt~~~wd~r~~------~~~y~prp~~~-------------~~~ 316 (1113)
T KOG0644|consen 264 GAPVSVLR---GHTGAVTAIAFSP-----RASSSDDGTCRIWDARLE------PRIYVPRPLKF-------------TEK 316 (1113)
T ss_pred CchHHHHh---ccccceeeeccCc-----cccCCCCCceEecccccc------ccccCCCCCCc-------------ccc
Confidence 99999988 8999999999999 337789999999999820 00000111111 111
Q ss_pred Cceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEE
Q 017553 241 NYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW 318 (369)
Q Consensus 241 ~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~ 318 (369)
..+.++.|. +..+++++.|+.-..|.+.... .+...+..+.++.+.. .+.+++-.+-.+.+|
T Consensus 317 ~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~---------------~~~~~lif~t~ssd~~-~~~~~ar~~~~~~vw 380 (1113)
T KOG0644|consen 317 DLVDSILFENNGDRFLTGSRDGEARNHEFEQLA---------------WRSNLLIFVTRSSDLS-SIVVTARNDHRLCVW 380 (1113)
T ss_pred cceeeeeccccccccccccCCcccccchhhHhh---------------hhccceEEEecccccc-ccceeeeeeeEeeee
Confidence 334444443 7788999999988888765432 1111222223332322 266677778889999
Q ss_pred EccCCCceeEEEeecCCCccceEEEEecCCCC-EEEEeecCCeEEEEecC
Q 017553 319 ELQSSPPVLIARLSHAQSKSPIRQTAMSYDGS-TILSCCEDGAIWRWDAI 367 (369)
Q Consensus 319 d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~vw~~~ 367 (369)
++.++. ....+. +|...+..+.++|-.. ...+++.||...|||+-
T Consensus 381 nl~~g~--l~H~l~--ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~ 426 (1113)
T KOG0644|consen 381 NLYTGQ--LLHNLM--GHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIW 426 (1113)
T ss_pred ecccch--hhhhhc--ccccceeeeeecCCCcHhhhhccCCCceEeeecc
Confidence 999984 344444 8888999999999665 55688999999999974
No 199
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.83 E-value=2.4e-20 Score=148.88 Aligned_cols=265 Identities=14% Similarity=0.175 Sum_probs=206.9
Q ss_pred eEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEE
Q 017553 36 LYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVID 114 (369)
Q Consensus 36 v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd 114 (369)
-+.+.|+. +|..++.++..+ |..+|..++.....+. -.+.|.++.|- .+.+ ++|++- ...++|||
T Consensus 132 PY~~~ytr----nGrhlllgGrKGHlAa~Dw~t~~L~~Ei~------v~Etv~Dv~~L--Hneq-~~AVAQ-K~y~yvYD 197 (545)
T KOG1272|consen 132 PYHLDYTR----NGRHLLLGGRKGHLAAFDWVTKKLHFEIN------VMETVRDVTFL--HNEQ-FFAVAQ-KKYVYVYD 197 (545)
T ss_pred CeeeeecC----CccEEEecCCccceeeeecccceeeeeee------hhhhhhhhhhh--cchH-HHHhhh-hceEEEec
Confidence 46677777 688888888877 9999999998877776 45678889887 5555 666654 56899999
Q ss_pred cCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEe
Q 017553 115 VSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG 194 (369)
Q Consensus 115 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 194 (369)
..|..++.++.| ..|..+.|.| ..-+|++++..|.++--|+.+|+.+..+. .-.+.+..++-+| -+..+-+|.
T Consensus 198 -~~GtElHClk~~-~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~~~---t~~G~~~vm~qNP-~NaVih~Gh 270 (545)
T KOG1272|consen 198 -NNGTELHCLKRH-IRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVASIR---TGAGRTDVMKQNP-YNAVIHLGH 270 (545)
T ss_pred -CCCcEEeehhhc-Cchhhhcccc-hhheeeecccCCceEEEeechhhhhHHHH---ccCCccchhhcCC-ccceEEEcC
Confidence 678888888866 5689999999 77889999999999999999999998888 4677888899999 778899999
Q ss_pred eCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEEEecCCCCCC
Q 017553 195 MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQ 272 (369)
Q Consensus 195 ~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~ 272 (369)
..|+|.+|.... ..|+..+..|.++|.+++++ |.++++.+.|..++|||+++...
T Consensus 271 snGtVSlWSP~s-----------------------kePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~q 327 (545)
T KOG1272|consen 271 SNGTVSLWSPNS-----------------------KEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQ 327 (545)
T ss_pred CCceEEecCCCC-----------------------cchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccc
Confidence 999999999888 67888889999999999998 89999999999999999998762
Q ss_pred CCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEcc-CCCc-eeEEEeecCCCccceEEEEecCCCC
Q 017553 273 SPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ-SSPP-VLIARLSHAQSKSPIRQTAMSYDGS 350 (369)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~-~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~ 350 (369)
+..+.. ..+...+++|..+ +||.+.. ..|.+|.-. .+.. ....-+.| ...++|..+.|.|-..
T Consensus 328 ---------l~t~~t-p~~a~~ls~Sqkg---lLA~~~G-~~v~iw~d~~~~s~~~~~pYm~H-~~~~~V~~l~FcP~ED 392 (545)
T KOG1272|consen 328 ---------LHTYRT-PHPASNLSLSQKG---LLALSYG-DHVQIWKDALKGSGHGETPYMNH-RCGGPVEDLRFCPYED 392 (545)
T ss_pred ---------cceeec-CCCcccccccccc---ceeeecC-CeeeeehhhhcCCCCCCcchhhh-ccCcccccceeccHHH
Confidence 333333 2456678888877 6666554 469999532 2211 11111222 2335899999999877
Q ss_pred EEEEeecCC
Q 017553 351 TILSCCEDG 359 (369)
Q Consensus 351 ~l~s~~~dg 359 (369)
.|-.|...|
T Consensus 393 vLGIGH~~G 401 (545)
T KOG1272|consen 393 VLGIGHAGG 401 (545)
T ss_pred eeeccccCC
Confidence 776665555
No 200
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.82 E-value=1.3e-18 Score=141.72 Aligned_cols=208 Identities=18% Similarity=0.245 Sum_probs=164.0
Q ss_pred cEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccc
Q 017553 50 NVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHG 128 (369)
Q Consensus 50 ~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 128 (369)
+.|+.++.|+ +.|.+ +.++....+. .|.+.+.+-.|+ |||. -|+++++||.|++|. ++|.+..++....
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~-----AH~~A~~~gRW~--~dGt-gLlt~GEDG~iKiWS-rsGMLRStl~Q~~ 145 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSIS-----AHAAAISSGRWS--PDGA-GLLTAGEDGVIKIWS-RSGMLRSTVVQNE 145 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhh-----hhhhhhhhcccC--CCCc-eeeeecCCceEEEEe-ccchHHHHHhhcC
Confidence 4566666666 88887 6677666666 588889889998 9999 899999999999999 6787777777778
Q ss_pred cceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCce
Q 017553 129 DSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 208 (369)
Q Consensus 129 ~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~ 208 (369)
.+|.|++|.|+..+.+++.+ +.+.+=-+.....+...+ +|.+-|.++.|++ ..+++++|+.|-..++||-..
T Consensus 146 ~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~k~i~Wk---AHDGiiL~~~W~~-~s~lI~sgGED~kfKvWD~~G-- 217 (737)
T KOG1524|consen 146 ESIRCARWAPNSNSIVFCQG--GHISIKPLAANSKIIRWR---AHDGLVLSLSWST-QSNIIASGGEDFRFKIWDAQG-- 217 (737)
T ss_pred ceeEEEEECCCCCceEEecC--CeEEEeecccccceeEEe---ccCcEEEEeecCc-cccceeecCCceeEEeecccC--
Confidence 89999999996666666554 456666666666677777 7999999999999 889999999999999999876
Q ss_pred eeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeeeCcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCC
Q 017553 209 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP 288 (369)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 288 (369)
.++.....|..+|++++|+++.++..++-+++|+=. ..
T Consensus 218 ----------------------~~Lf~S~~~ey~ITSva~npd~~~~v~S~nt~R~~~--------------------p~ 255 (737)
T KOG1524|consen 218 ----------------------ANLFTSAAEEYAITSVAFNPEKDYLLWSYNTARFSS--------------------PR 255 (737)
T ss_pred ----------------------cccccCChhccceeeeeeccccceeeeeeeeeeecC--------------------CC
Confidence 456777889999999999955444434444454222 12
Q ss_pred CCCeeEEEEeecCCccEEEEecCCCeEEEEE
Q 017553 289 ECDIWFIKFSCDFHYNAAAIGNREGKIFVWE 319 (369)
Q Consensus 289 ~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d 319 (369)
.+.|..++||+||. .+++|+..|.+.+=.
T Consensus 256 ~GSifnlsWS~DGT--Q~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 256 VGSIFNLSWSADGT--QATCGTSTGQLIVAY 284 (737)
T ss_pred ccceEEEEEcCCCc--eeeccccCceEEEee
Confidence 46789999999996 899999999876643
No 201
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.80 E-value=1.1e-15 Score=116.92 Aligned_cols=278 Identities=15% Similarity=0.222 Sum_probs=181.7
Q ss_pred eEEEEEeeccCCCccEEEEecCCcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecC------Ce
Q 017553 36 LYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN------GI 109 (369)
Q Consensus 36 v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~d------g~ 109 (369)
..+++|+. |...++.|-+++.+||++..-+.....+. +.+.+.-+..-+- ...+.++|+.+ ..
T Consensus 8 ~lsvs~NQ----D~ScFava~~~Gfriyn~~P~ke~~~r~~-----~~~G~~~veMLfR--~N~laLVGGg~~pky~pNk 76 (346)
T KOG2111|consen 8 TLSVSFNQ----DHSCFAVATDTGFRIYNCDPFKESASRQF-----IDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNK 76 (346)
T ss_pred eeEEEEcc----CCceEEEEecCceEEEecCchhhhhhhcc-----ccCchhhhhHhhh--hceEEEecCCCCCCCCCce
Confidence 44599998 56899999999999999875333222221 1222222222211 22133344433 46
Q ss_pred EEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEcc-CCcEEEEeeccCCCCCcEEEEEecCCCce
Q 017553 110 IRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ-TGICILIFAGAGGHRNEVLSVDFHPSDIY 188 (369)
Q Consensus 110 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 188 (369)
|.|||=...+++.++. ...+|.++.+.+ ..|+..- ++.|.||... +-+.++.+.... ....+.+++-.. +..
T Consensus 77 viIWDD~k~~~i~el~-f~~~I~~V~l~r---~riVvvl-~~~I~VytF~~n~k~l~~~et~~-NPkGlC~~~~~~-~k~ 149 (346)
T KOG2111|consen 77 VIIWDDLKERCIIELS-FNSEIKAVKLRR---DRIVVVL-ENKIYVYTFPDNPKLLHVIETRS-NPKGLCSLCPTS-NKS 149 (346)
T ss_pred EEEEecccCcEEEEEE-eccceeeEEEcC---CeEEEEe-cCeEEEEEcCCChhheeeeeccc-CCCceEeecCCC-Cce
Confidence 9999966667777776 678899999987 3455544 4789999998 456666665422 122344444332 334
Q ss_pred EEEE-EeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCe-EEE
Q 017553 189 RIAS-CGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNE-IVL 264 (369)
Q Consensus 189 ~l~~-~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~-i~i 264 (369)
+|+. |-.-|.|.+-|+.... ..+...+..|...|.|++.+ |..+++++..|+ |||
T Consensus 150 ~LafPg~k~GqvQi~dL~~~~---------------------~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRI 208 (346)
T KOG2111|consen 150 LLAFPGFKTGQVQIVDLASTK---------------------PNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRI 208 (346)
T ss_pred EEEcCCCccceEEEEEhhhcC---------------------cCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEE
Confidence 4443 3345899999998721 11346778999999999998 899999999998 899
Q ss_pred ecCCCCCCCCCCCccceeeeccC--CCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeE--------------
Q 017553 265 WEPKMKEQSPGEGTADILQKYPV--PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLI-------------- 328 (369)
Q Consensus 265 ~d~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-------------- 328 (369)
||..+++ .+.++.- ....|.+++|||+.. +|+++++.|+++||.++.......
T Consensus 209 Fdt~~g~---------~l~E~RRG~d~A~iy~iaFSp~~s--~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpk 277 (346)
T KOG2111|consen 209 FDTEDGT---------LLQELRRGVDRADIYCIAFSPNSS--WLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPK 277 (346)
T ss_pred EEcCCCc---------EeeeeecCCchheEEEEEeCCCcc--EEEEEcCCCeEEEEEeecCCCCccccccccccccccch
Confidence 9999987 3444332 346799999999996 999999999999999876321111
Q ss_pred --------EEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEe
Q 017553 329 --------ARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 365 (369)
Q Consensus 329 --------~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~ 365 (369)
..+. -..+...-++|-.+.+.++..+.||.-+=+.
T Consensus 278 y~~S~wS~~~f~--l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~ 320 (346)
T KOG2111|consen 278 YFSSEWSFAKFQ--LPQGTQCIIAFGSETNTVIAICADGSYYKFK 320 (346)
T ss_pred hcccceeEEEEE--ccCCCcEEEEecCCCCeEEEEEeCCcEEEEE
Confidence 1111 1124455567776655666666788655443
No 202
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=2.9e-17 Score=144.11 Aligned_cols=242 Identities=16% Similarity=0.188 Sum_probs=168.7
Q ss_pred CCCccEEEEeecCCeEEEEEcCCccccceeecc---ccceEEEEecC-CCCceEEEEeCCCcEEEEEccC-----CcEEE
Q 017553 95 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGH---GDSINEIRTQP-LKPSLVVSASKDESVRLWNVQT-----GICIL 165 (369)
Q Consensus 95 ~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---~~~v~~~~~~~-~~~~~l~s~~~dg~i~vwd~~~-----~~~~~ 165 (369)
|-.. .++++...-.|++||.+.++....|..+ ...|+.+.+-. ++..++++|+.||.|+||+--. .+.+.
T Consensus 1074 pf~p-~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVT 1152 (1387)
T KOG1517|consen 1074 PFEP-QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVT 1152 (1387)
T ss_pred CCCc-eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEE
Confidence 4444 7888887779999999999887777643 35788888754 4566899999999999997432 22333
Q ss_pred EeeccCCC----CCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCC
Q 017553 166 IFAGAGGH----RNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN 241 (369)
Q Consensus 166 ~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (369)
.+..+.++ .+.=.-+.|....|. |+++|.-..|+|||......... .......
T Consensus 1153 aw~~Ls~~~~~~r~~~~v~dWqQ~~G~-Ll~tGd~r~IRIWDa~~E~~~~d----------------------iP~~s~t 1209 (1387)
T KOG1517|consen 1153 AWSSLSDQLPGARGTGLVVDWQQQSGH-LLVTGDVRSIRIWDAHKEQVVAD----------------------IPYGSST 1209 (1387)
T ss_pred eeccccccCccCCCCCeeeehhhhCCe-EEecCCeeEEEEEecccceeEee----------------------cccCCCc
Confidence 33222111 111134677764555 55555578999999988432211 1112445
Q ss_pred ceeeeeee---CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCC--eeEEEEeecCCccEEEEecCCCeEE
Q 017553 242 YVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECD--IWFIKFSCDFHYNAAAIGNREGKIF 316 (369)
Q Consensus 242 ~v~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~s~~~~~~~l~~~~~dg~i~ 316 (369)
.++++.-+ |+.+++|..||.|++||.+...+. ..+..++.|... |..+.+.+.|-. .|++|+.+|.|+
T Consensus 1210 ~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d------s~v~~~R~h~~~~~Iv~~slq~~G~~-elvSgs~~G~I~ 1282 (1387)
T KOG1517|consen 1210 LVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD------SLVCVYREHNDVEPIVHLSLQRQGLG-ELVSGSQDGDIQ 1282 (1387)
T ss_pred cceeecccccCCceEEEeecCCceEEeecccCCcc------ccceeecccCCcccceeEEeecCCCc-ceeeeccCCeEE
Confidence 56666654 789999999999999999987532 256666667665 899999987753 699999999999
Q ss_pred EEEccCCCceeEEEee-cCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 317 VWELQSSPPVLIARLS-HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 317 i~d~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
+||++........... +..-.+..+++..+++...+|+|+. +.|+||++..
T Consensus 1283 ~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G 1334 (1387)
T KOG1517|consen 1283 LLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG 1334 (1387)
T ss_pred EEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh
Confidence 9999984222222222 1111235999999999999999998 8999999864
No 203
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.79 E-value=3.7e-17 Score=124.91 Aligned_cols=235 Identities=11% Similarity=0.167 Sum_probs=173.7
Q ss_pred cccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCcc---ccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEc
Q 017553 82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK---LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 158 (369)
Q Consensus 82 ~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~ 158 (369)
..++|+|.+|. +|++ .++.+..+..|.||.....+ ..+++..|...|+.|+|+| ..+.|++|+.|..-++|..
T Consensus 9 ~~~pitchAwn--~drt-~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 9 LLEPITCHAWN--SDRT-QIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred ccCceeeeeec--CCCc-eEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCcccccc
Confidence 35689999998 8888 89999999999999986654 5788899999999999999 8889999999999999998
Q ss_pred cCC-c--EEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceee
Q 017553 159 QTG-I--CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI 235 (369)
Q Consensus 159 ~~~-~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (369)
..+ + +...+. .++...+++.|+| .++.|++|+.-..|.+|-++..+.-- .....
T Consensus 85 ~~~~~WkptlvLl---RiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdWW-------------------VsKhi 141 (361)
T KOG1523|consen 85 PSGGTWKPTLVLL---RINRAATCVKWSP-KENKFAVGSGARLISVCYYEQENDWW-------------------VSKHI 141 (361)
T ss_pred CCCCeeccceeEE---EeccceeeEeecC-cCceEEeccCccEEEEEEEeccccee-------------------hhhhh
Confidence 443 2 333333 4899999999999 99999999999999999888732210 01112
Q ss_pred eccCCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCC--CC-------CCccceeeeccCCCCCeeEEEEeecCCcc
Q 017553 236 ASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQS--PG-------EGTADILQKYPVPECDIWFIKFSCDFHYN 304 (369)
Q Consensus 236 ~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~--~~-------~~~~~~~~~~~~~~~~i~~~~~s~~~~~~ 304 (369)
-..+...|.+++|. +-++++|+.|+..|+|..--.... +. .+...++.++....+.+..+.|+|+|.
T Consensus 142 kkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~-- 219 (361)
T KOG1523|consen 142 KKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN-- 219 (361)
T ss_pred CCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC--
Confidence 23456778888887 448889999999999865322111 11 112224455555668899999999996
Q ss_pred EEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCC
Q 017553 305 AAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYD 348 (369)
Q Consensus 305 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 348 (369)
.|+-.+.|..+.+-|.....+ ....+. ...-+..++.|-.+
T Consensus 220 ~lawv~Hds~v~~~da~~p~~-~v~~~~--~~~lP~ls~~~ise 260 (361)
T KOG1523|consen 220 RLAWVGHDSTVSFVDAAGPSE-RVQSVA--TAQLPLLSVSWISE 260 (361)
T ss_pred EeeEecCCCceEEeecCCCch-hccchh--hccCCceeeEeecC
Confidence 899899999999999877642 222222 11156666776544
No 204
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.4e-16 Score=137.24 Aligned_cols=298 Identities=16% Similarity=0.176 Sum_probs=207.8
Q ss_pred cccCCcCeEEEEEeeccCCCccEEEEecCCcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCC
Q 017553 29 LQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING 108 (369)
Q Consensus 29 ~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg 108 (369)
+-+-...-..-.||+ |++++..+..+.|.||...++.++..+. .|..++..+.+.+++....++++++.+|
T Consensus 12 lgg~n~~~~~avfSn----D~k~l~~~~~~~V~VyS~~Tg~~i~~l~-----~~~a~l~s~~~~~~~~~~~~~~~~sl~G 82 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSN----DAKFLFLCTGNFVKVYSTATGECITSLE-----DHTAPLTSVIVLPSSENANYLIVCSLDG 82 (792)
T ss_pred eccccceeccccccc----CCcEEEEeeCCEEEEEecchHhhhhhcc-----cccCccceeeecCCCccceEEEEEecCc
Confidence 333333333445788 6888998888999999999999998776 5777888888886666534788999999
Q ss_pred eEEEEEcCCccccceeeccccc----------------------------------------------------------
Q 017553 109 IIRVIDVSNEKLHKSFVGHGDS---------------------------------------------------------- 130 (369)
Q Consensus 109 ~i~vwd~~~~~~~~~~~~~~~~---------------------------------------------------------- 130 (369)
.|++||...+.+++++..+...
T Consensus 83 ~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~ 162 (792)
T KOG1963|consen 83 TIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE 162 (792)
T ss_pred cEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC
Confidence 9999999887766655421100
Q ss_pred eEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEE-EeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCcee
Q 017553 131 INEIRTQPLKPSLVVSASKDESVRLWNVQTGICIL-IFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWT 209 (369)
Q Consensus 131 v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~ 209 (369)
-.+|.+++ .+.+ ...-.+..+.+|....+.... .......|...+++.+++| ++++++++..||+|.+|.--..
T Consensus 163 ~~~I~~~~-~ge~-~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~-- 237 (792)
T KOG1963|consen 163 PKSIVDNN-SGEF-KGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGS-- 237 (792)
T ss_pred CccEEEcC-CceE-EEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEecc-ccceEEEeccCCcEEEEecccc--
Confidence 01222222 2222 222233456677766543111 1111124777789999999 9999999999999999965431
Q ss_pred eeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccC
Q 017553 210 YVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV 287 (369)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 287 (369)
.........+..|...|.+++|+ |.+|++|+..+.+.+|.+.++++. -++-
T Consensus 238 -----------------~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kq----------fLPR 290 (792)
T KOG1963|consen 238 -----------------SDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQ----------FLPR 290 (792)
T ss_pred -----------------ccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCcc----------cccc
Confidence 01123456778899999999997 889999999999999999998632 1222
Q ss_pred CCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCcee-EEEeec------CCCccceEEEEecCCCCEEEEeecCCe
Q 017553 288 PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVL-IARLSH------AQSKSPIRQTAMSYDGSTILSCCEDGA 360 (369)
Q Consensus 288 ~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~------~~~~~~v~~~~~s~~~~~l~s~~~dg~ 360 (369)
-.++|..+.+|||+. +.+....|+.|.+....+...+. +..+.. ....+-.+.++++|.-+.++-.+..|.
T Consensus 291 Lgs~I~~i~vS~ds~--~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~ 368 (792)
T KOG1963|consen 291 LGSPILHIVVSPDSD--LYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGH 368 (792)
T ss_pred cCCeeEEEEEcCCCC--eEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCce
Confidence 256799999999997 67777889999999876543211 111110 123456788999997778888899999
Q ss_pred EEEEecCCC
Q 017553 361 IWRWDAIPT 369 (369)
Q Consensus 361 i~vw~~~~~ 369 (369)
|.+||+.++
T Consensus 369 vQ~ydl~td 377 (792)
T KOG1963|consen 369 VQFYDLYTD 377 (792)
T ss_pred EEEEecccc
Confidence 999998653
No 205
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.79 E-value=4.7e-17 Score=124.93 Aligned_cols=306 Identities=15% Similarity=0.202 Sum_probs=194.5
Q ss_pred EEEEeeccCCCccEEEEecCCcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCC
Q 017553 38 AVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN 117 (369)
Q Consensus 38 ~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~ 117 (369)
-..||| +|+++|+++.-++.|-|..+-+....+.. -..|.-+.|. .|...+|.....++.|.+|++..
T Consensus 13 ~c~fSp----~g~yiAs~~~yrlviRd~~tlq~~qlf~c------ldki~yieW~--ads~~ilC~~yk~~~vqvwsl~Q 80 (447)
T KOG4497|consen 13 FCSFSP----CGNYIASLSRYRLVIRDSETLQLHQLFLC------LDKIVYIEWK--ADSCHILCVAYKDPKVQVWSLVQ 80 (447)
T ss_pred ceeECC----CCCeeeeeeeeEEEEeccchhhHHHHHHH------HHHhhheeee--ccceeeeeeeeccceEEEEEeec
Confidence 357899 79999999988888888776655443332 2355568888 77775677788999999999999
Q ss_pred ccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCC
Q 017553 118 EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN 197 (369)
Q Consensus 118 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~ 197 (369)
.+-..++......+..++|+|++..+|.+...|-.|.+|.+.+.+....-. .+..+..++|+| ++++.+.++.-.
T Consensus 81 pew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~----pK~~~kg~~f~~-dg~f~ai~sRrD 155 (447)
T KOG4497|consen 81 PEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH----PKTNVKGYAFHP-DGQFCAILSRRD 155 (447)
T ss_pred ceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc----cccCceeEEECC-CCceeeeeeccc
Confidence 988888888889999999999444677788889999999998766544322 334568899999 888777765432
Q ss_pred cEEEEEccCc---eeeee--------eeeeccCCCCCCCCceeecceeeeccC-CCceeeeeee--CcEEEEeecCCeEE
Q 017553 198 TVKIWSMKEF---WTYVE--------KSFTWTDLPSKFPTKYVQFPVFIASVH-SNYVDCNRWL--GDFILSKSVDNEIV 263 (369)
Q Consensus 198 ~v~i~d~~~~---~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~--~~~l~~~~~d~~i~ 263 (369)
..-.+.+... ....+ ..++|.........-...........| .-.+..++|+ ++++++|+.|+.+|
T Consensus 156 Ckdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lr 235 (447)
T KOG4497|consen 156 CKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLR 235 (447)
T ss_pred HHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhh
Confidence 1111111100 00000 001111100000000000000111122 2456777887 78999999999998
Q ss_pred EecCCCCCCCCC---------------------------------------------------------CCccceeeecc
Q 017553 264 LWEPKMKEQSPG---------------------------------------------------------EGTADILQKYP 286 (369)
Q Consensus 264 i~d~~~~~~~~~---------------------------------------------------------~~~~~~~~~~~ 286 (369)
+.+--+-+.... ....++...++
T Consensus 236 vlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~p 315 (447)
T KOG4497|consen 236 VLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFP 315 (447)
T ss_pred hhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCC
Confidence 865433221100 00011112233
Q ss_pred CCCCCeeEEEEeecCCccEEEEec--CCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEE
Q 017553 287 VPECDIWFIKFSCDFHYNAAAIGN--REGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRW 364 (369)
Q Consensus 287 ~~~~~i~~~~~s~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw 364 (369)
.+...+.-++|++|.. ++++-. .-+.+-+||++..+. ...+ ....+|....|+|....|+.+....++++|
T Consensus 316 nPk~g~g~lafs~Ds~--y~aTrnd~~PnalW~Wdlq~l~l--~avL---iQk~piraf~WdP~~prL~vctg~srLY~W 388 (447)
T KOG4497|consen 316 NPKCGAGKLAFSCDST--YAATRNDKYPNALWLWDLQNLKL--HAVL---IQKHPIRAFEWDPGRPRLVVCTGKSRLYFW 388 (447)
T ss_pred CcccccceeeecCCce--EEeeecCCCCceEEEEechhhhh--hhhh---hhccceeEEEeCCCCceEEEEcCCceEEEE
Confidence 3455677899999985 666644 346799999998743 2222 223689999999999999888888889999
Q ss_pred ecC
Q 017553 365 DAI 367 (369)
Q Consensus 365 ~~~ 367 (369)
...
T Consensus 389 ~ps 391 (447)
T KOG4497|consen 389 APS 391 (447)
T ss_pred cCC
Confidence 753
No 206
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.78 E-value=5.9e-16 Score=118.34 Aligned_cols=235 Identities=14% Similarity=0.183 Sum_probs=161.6
Q ss_pred EEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeecccc--ceEEEEecCCCCceEE-EEeCC------CcEEEEEc
Q 017553 88 TVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGD--SINEIRTQPLKPSLVV-SASKD------ESVRLWNV 158 (369)
Q Consensus 88 ~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~-s~~~d------g~i~vwd~ 158 (369)
.++|. .|.. -+++|..+| .+||+.+--+.......+.+ .+.-|-|- .++|+ .|+.+ ..|.|||=
T Consensus 10 svs~N--QD~S-cFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR---~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 10 SVSFN--QDHS-CFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFR---SNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred EEEEc--cCCc-eEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhh---hceEEEecCCCCCCCCCceEEEEec
Confidence 35555 8877 777777766 79999865433222222222 22223332 23433 34333 57999997
Q ss_pred cCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeecc
Q 017553 159 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV 238 (369)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (369)
...+++.++. ...+|.++.+.+ + .+++. ..+.|++|.....-... . ......
T Consensus 83 ~k~~~i~el~----f~~~I~~V~l~r-~--riVvv-l~~~I~VytF~~n~k~l-------------------~-~~et~~ 134 (346)
T KOG2111|consen 83 LKERCIIELS----FNSEIKAVKLRR-D--RIVVV-LENKIYVYTFPDNPKLL-------------------H-VIETRS 134 (346)
T ss_pred ccCcEEEEEE----eccceeeEEEcC-C--eEEEE-ecCeEEEEEcCCChhhe-------------------e-eeeccc
Confidence 7788888886 889999999986 3 34444 36789999988521100 0 111112
Q ss_pred CCCceeeeeee-Cc-EEEE-eecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCe-
Q 017553 239 HSNYVDCNRWL-GD-FILS-KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGK- 314 (369)
Q Consensus 239 ~~~~v~~~~~~-~~-~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~- 314 (369)
.+..+.+++.. .. +|+. |-.-|.|+|-|+...+.. ....+..|...|.+++++.+|. ++|+++..|+
T Consensus 135 NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~-------~p~~I~AH~s~Iacv~Ln~~Gt--~vATaStkGTL 205 (346)
T KOG2111|consen 135 NPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPN-------APSIINAHDSDIACVALNLQGT--LVATASTKGTL 205 (346)
T ss_pred CCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcC-------CceEEEcccCceeEEEEcCCcc--EEEEeccCcEE
Confidence 23334444443 33 3333 345689999999876531 2356778999999999999996 9999999998
Q ss_pred EEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 315 IFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 315 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
|||||..++ ..+.++........|.+++|||++.+||++|+.|+++|+.+..
T Consensus 206 IRIFdt~~g--~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 206 IRIFDTEDG--TLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEEEcCCC--cEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 899999999 4667777556678999999999999999999999999999875
No 207
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=5.8e-16 Score=120.45 Aligned_cols=288 Identities=16% Similarity=0.200 Sum_probs=182.1
Q ss_pred CcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEE
Q 017553 33 KRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIR 111 (369)
Q Consensus 33 ~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~ 111 (369)
+-.+.-++|++ .-..+|++..|- |++|+-.. .....++. .....|.+++|. |.+...|+.|+..| |.
T Consensus 98 ~~dlr~~aWhq----H~~~fava~nddvVriy~kss-t~pt~Lks----~sQrnvtclawR--PlsaselavgCr~g-Ic 165 (445)
T KOG2139|consen 98 EIDLRGVAWHQ----HIIAFAVATNDDVVRIYDKSS-TCPTKLKS----VSQRNVTCLAWR--PLSASELAVGCRAG-IC 165 (445)
T ss_pred hcceeeEeech----hhhhhhhhccCcEEEEeccCC-CCCceecc----hhhcceeEEEec--cCCcceeeeeecce-eE
Confidence 44578899998 345677777666 99999544 55555554 456789999999 76666788888765 89
Q ss_pred EEEcCCc----cc----------cceeeccccceEEEEecCCCCceEEEEeC-CCcEEEEEccCCcEEEEeeccCCCCCc
Q 017553 112 VIDVSNE----KL----------HKSFVGHGDSINEIRTQPLKPSLVVSASK-DESVRLWNVQTGICILIFAGAGGHRNE 176 (369)
Q Consensus 112 vwd~~~~----~~----------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~ 176 (369)
+|..... .. +..-.+| .+|++|.|.+ ++..+++++. |..|.|||+.++..+.... .-.+.
T Consensus 166 iW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~~~pL~~---~glgg 240 (445)
T KOG2139|consen 166 IWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNE-DGTILVTASFGSSSIMIWDPDTGQKIPLIP---KGLGG 240 (445)
T ss_pred EEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcC-CCCEEeecccCcceEEEEcCCCCCcccccc---cCCCc
Confidence 9986432 11 1122234 6899999999 8888888875 6789999999988776653 35567
Q ss_pred EEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEE-
Q 017553 177 VLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFI- 253 (369)
Q Consensus 177 v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l- 253 (369)
+.-+.|+| ++.+|+++.-|+..++|+...... .......++.|....|+ |.+|
T Consensus 241 ~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt-----------------------~erw~lgsgrvqtacWspcGsfLL 296 (445)
T KOG2139|consen 241 FSLLKWSP-DGDVLFAATCDAVFRLWQENQSWT-----------------------KERWILGSGRVQTACWSPCGSFLL 296 (445)
T ss_pred eeeEEEcC-CCCEEEEecccceeeeehhcccce-----------------------ecceeccCCceeeeeecCCCCEEE
Confidence 88999999 889999999999999996554110 11111223477778887 5544
Q ss_pred EEeecCCeEEEecCCCCCCCCCCC------ccceeeecc-----C----CCCCeeEEEEeecCCccEEEEecCC------
Q 017553 254 LSKSVDNEIVLWEPKMKEQSPGEG------TADILQKYP-----V----PECDIWFIKFSCDFHYNAAAIGNRE------ 312 (369)
Q Consensus 254 ~~~~~d~~i~i~d~~~~~~~~~~~------~~~~~~~~~-----~----~~~~i~~~~~s~~~~~~~l~~~~~d------ 312 (369)
++++... ++|.+.-..+..... ...++..++ . -.+.+.+++|.|.|. +|++.-..
T Consensus 297 f~~sgsp--~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGe--yLav~fKg~~~v~~ 372 (445)
T KOG2139|consen 297 FACSGSP--RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGE--YLAVIFKGQSFVLL 372 (445)
T ss_pred EEEcCCc--eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCC--EEEEEEcCCchhhh
Confidence 3433333 334333222111110 111111111 1 135688999999997 67765433
Q ss_pred --CeEEEEEccCCCceeEEEeecCCCccceEEEEecC---CCCEEEEeecCCeEEEEec
Q 017553 313 --GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSY---DGSTILSCCEDGAIWRWDA 366 (369)
Q Consensus 313 --g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~s~~~dg~i~vw~~ 366 (369)
+.|.+||...........-...+. .....+.|+| ++.+|..+=..|.+.-|++
T Consensus 373 ~k~~i~~fdtr~sp~vels~cg~i~g-e~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 373 CKLHISRFDTRKSPPVELSYCGMIGG-EYPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred hhhhhhhhcccccCceEEEecccccC-CCCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 346778877654322221111111 2244566765 5778888878888877664
No 208
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.78 E-value=3.1e-15 Score=124.64 Aligned_cols=305 Identities=15% Similarity=0.126 Sum_probs=177.0
Q ss_pred ccceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCc
Q 017553 20 KREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGI 98 (369)
Q Consensus 20 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~ 98 (369)
....+.+..+......-..++|+| ||+++.+++.|+ |.++|+.+++.++.++. ...-..++++ +||+
T Consensus 23 ~~t~~~~~~i~~~~~~h~~~~~s~----Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~------G~~~~~i~~s--~DG~ 90 (369)
T PF02239_consen 23 GATNKVVARIPTGGAPHAGLKFSP----DGRYLYVANRDGTVSVIDLATGKVVATIKV------GGNPRGIAVS--PDGK 90 (369)
T ss_dssp TTT-SEEEEEE-STTEEEEEE-TT-----SSEEEEEETTSEEEEEETTSSSEEEEEE-------SSEEEEEEE----TTT
T ss_pred CCCCeEEEEEcCCCCceeEEEecC----CCCEEEEEcCCCeEEEEECCcccEEEEEec------CCCcceEEEc--CCCC
Confidence 445666677765544444577898 688888888888 99999999999888873 2334556666 9999
Q ss_pred cEEEEe-ecCCeEEEEEcCCccccceeecc-------ccceEEEEecCCCCceEE-EEeCCCcEEEEEccCCcEEE--Ee
Q 017553 99 PFLVAG-GINGIIRVIDVSNEKLHKSFVGH-------GDSINEIRTQPLKPSLVV-SASKDESVRLWNVQTGICIL--IF 167 (369)
Q Consensus 99 ~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~--~~ 167 (369)
+++++ ...+.+.++|.++.+.++.+... ...+..+..+| ....++ +--+.+.|.+.|....+.+. .+
T Consensus 91 -~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~-~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i 168 (369)
T PF02239_consen 91 -YVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASP-GRPEFVVNLKDTGEIWVVDYSDPKNLKVTTI 168 (369)
T ss_dssp -EEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-S-SSSEEEEEETTTTEEEEEETTTSSCEEEEEE
T ss_pred -EEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecC-CCCEEEEEEccCCeEEEEEeccccccceeee
Confidence 55554 57899999999999988887643 24677888888 555444 44445888888987655432 33
Q ss_pred eccCCCCCcEEEEEecCCCceEEEE-EeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCC--cee
Q 017553 168 AGAGGHRNEVLSVDFHPSDIYRIAS-CGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN--YVD 244 (369)
Q Consensus 168 ~~~~~~~~~v~~~~~~~~~~~~l~~-~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~ 244 (369)
. .........|+| ++++++. ...+..|-++|..+.+........ ..+ ...+...+ .|.. ++.
T Consensus 169 ~----~g~~~~D~~~dp-dgry~~va~~~sn~i~viD~~~~k~v~~i~~g--~~p-------~~~~~~~~-php~~g~vw 233 (369)
T PF02239_consen 169 K----VGRFPHDGGFDP-DGRYFLVAANGSNKIAVIDTKTGKLVALIDTG--KKP-------HPGPGANF-PHPGFGPVW 233 (369)
T ss_dssp E------TTEEEEEE-T-TSSEEEEEEGGGTEEEEEETTTTEEEEEEE-S--SSB-------EETTEEEE-EETTTEEEE
T ss_pred c----ccccccccccCc-ccceeeecccccceeEEEeeccceEEEEeecc--ccc-------cccccccc-cCCCcceEE
Confidence 2 455678899999 6666554 566778999999885432221110 000 00011111 1222 122
Q ss_pred eeeeeCcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEe----cCCCeEEEEEc
Q 017553 245 CNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG----NREGKIFVWEL 320 (369)
Q Consensus 245 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~----~~dg~i~i~d~ 320 (369)
...-.+...++.-....+.+||....+ .+++++....+ ..+..+|+++ ++.+. ...+.|.++|.
T Consensus 234 ~~~~~~~~~~~~ig~~~v~v~d~~~wk---------vv~~I~~~G~g-lFi~thP~s~--~vwvd~~~~~~~~~v~viD~ 301 (369)
T PF02239_consen 234 ATSGLGYFAIPLIGTDPVSVHDDYAWK---------VVKTIPTQGGG-LFIKTHPDSR--YVWVDTFLNPDADTVQVIDK 301 (369)
T ss_dssp EEEBSSSSEEEEEE--TTT-STTTBTS---------EEEEEE-SSSS---EE--TT-S--EEEEE-TT-SSHT-EEEEEC
T ss_pred eeccccceecccccCCccccchhhcCe---------EEEEEECCCCc-ceeecCCCCc--cEEeeccCCCCCceEEEEEC
Confidence 221123333333334456677777665 67777776666 7888999997 66655 55689999999
Q ss_pred cCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCC--eEEEEecCC
Q 017553 321 QSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDG--AIWRWDAIP 368 (369)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg--~i~vw~~~~ 368 (369)
++. .....+... ....+..+.|++||+.+..+..++ .|.|||..+
T Consensus 302 ~tl--~~~~~i~~~-~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~T 348 (369)
T PF02239_consen 302 KTL--KVVKTITPG-PGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKT 348 (369)
T ss_dssp CGT--EEEE-HHHH-HT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTT
T ss_pred cCc--ceeEEEecc-CCCcEeccEECCCCCEEEEEEecCCCEEEEEECCC
Confidence 998 445555421 113488999999999776555443 699999765
No 209
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=1.5e-16 Score=124.83 Aligned_cols=252 Identities=13% Similarity=0.180 Sum_probs=185.0
Q ss_pred cccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccce------eeccccceEEEEecCCCCceEEEEeCCCcEEE
Q 017553 82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKS------FVGHGDSINEIRTQPLKPSLVVSASKDESVRL 155 (369)
Q Consensus 82 ~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~------~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~v 155 (369)
....+..++|...++.+ .+...+.+-.+..+.+........ .....++|..++... ..|++|-.+|.+.+
T Consensus 54 ~~~ris~l~~~~d~~te-vl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~d---g~Litc~~sG~l~~ 129 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETE-VLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLAD---GTLITCVSSGNLQV 129 (412)
T ss_pred hhhhhhhheeecCCcee-EeeccccCcccccccccCCccccccccccccccccccccchhhcC---CEEEEEecCCcEEE
Confidence 45677788888555555 566555777788777766654433 234556777777653 56888888999999
Q ss_pred EEccCCc----EEEEeeccCCCCCcEEEEEecCCCceEEEEEeeC--CcEEEEEccCceeeeeeeeeccCCCCCCCCcee
Q 017553 156 WNVQTGI----CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD--NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYV 229 (369)
Q Consensus 156 wd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (369)
|..+.+. .+..+. ....+..+.-++....++++|+.. ..+.+||+...+....... .+. ...
T Consensus 130 ~~~k~~d~hss~l~~la----~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKN----vpn----D~L 197 (412)
T KOG3881|consen 130 RHDKSGDLHSSKLIKLA----TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKN----VPN----DRL 197 (412)
T ss_pred EeccCCccccccceeee----cCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccC----CCC----ccc
Confidence 9988443 333343 345677788887677888889999 8899999998533222211 110 000
Q ss_pred ecceeeeccCCCceeeeeee----CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccE
Q 017553 230 QFPVFIASVHSNYVDCNRWL----GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNA 305 (369)
Q Consensus 230 ~~~~~~~~~~~~~v~~~~~~----~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~ 305 (369)
. ..-+-+++.+.|- ...|++++.-+.+++||.+.+++ ++..+...+.+++++...|.++ +
T Consensus 198 ~------LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR--------PV~~fd~~E~~is~~~l~p~gn--~ 261 (412)
T KOG3881|consen 198 G------LRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRR--------PVAQFDFLENPISSTGLTPSGN--F 261 (412)
T ss_pred c------ceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCc--------ceeEeccccCcceeeeecCCCc--E
Confidence 0 0113345666664 35899999999999999998765 7788888889999999999996 8
Q ss_pred EEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 306 AAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 306 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
+++|..-|.+..||++.++ .....+. +..+.|+++..+|..++||++|-|..|||+|+++
T Consensus 262 Iy~gn~~g~l~~FD~r~~k-l~g~~~k--g~tGsirsih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 262 IYTGNTKGQLAKFDLRGGK-LLGCGLK--GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred EEEecccchhheecccCce-eeccccC--CccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence 9999999999999999984 2233355 7779999999999999999999999999999876
No 210
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.77 E-value=7.3e-15 Score=122.77 Aligned_cols=265 Identities=11% Similarity=0.107 Sum_probs=155.4
Q ss_pred cceeeeeecccCCcCeEEEEEeeccCCCccEEEEecC-Cc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCc
Q 017553 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGG-NR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGI 98 (369)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~-~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~ 98 (369)
..++....+. +.+....++++| ++++|++++. ++ |.+|++.....+....... .......++++ |+|+
T Consensus 23 g~l~~~~~~~-~~~~~~~l~~sp----d~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~---~~~~p~~i~~~--~~g~ 92 (330)
T PRK11028 23 GALTLLQVVD-VPGQVQPMVISP----DKRHLYVGVRPEFRVLSYRIADDGALTFAAESP---LPGSPTHISTD--HQGR 92 (330)
T ss_pred CceeeeeEEe-cCCCCccEEECC----CCCEEEEEECCCCcEEEEEECCCCceEEeeeec---CCCCceEEEEC--CCCC
Confidence 3445555554 345677899999 5788776644 34 9999987433333333221 12233456666 9999
Q ss_pred cEEEEee-cCCeEEEEEcCCc-cc---cceeeccccceEEEEecCCCCceE-EEEeCCCcEEEEEccCCcEEEE-----e
Q 017553 99 PFLVAGG-INGIIRVIDVSNE-KL---HKSFVGHGDSINEIRTQPLKPSLV-VSASKDESVRLWNVQTGICILI-----F 167 (369)
Q Consensus 99 ~~l~~~~-~dg~i~vwd~~~~-~~---~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~-----~ 167 (369)
+|++++ .++.|.+|++++. .. +..+. +......++++| +++++ ++...++.|.+||+.+...+.. .
T Consensus 93 -~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~ 169 (330)
T PRK11028 93 -FLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEV 169 (330)
T ss_pred -EEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCcccccCCCce
Confidence 666554 5889999999643 22 22222 223467788999 66666 4555679999999976433221 1
Q ss_pred eccCCCCCcEEEEEecCCCceEEEEEee-CCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeee
Q 017553 168 AGAGGHRNEVLSVDFHPSDIYRIASCGM-DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCN 246 (369)
Q Consensus 168 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 246 (369)
.. ........++|+| ++++++++.. +++|.+|+++......+........+.. ..+......+
T Consensus 170 ~~--~~g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~-------------~~~~~~~~~i 233 (330)
T PRK11028 170 TT--VEGAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPAD-------------FSDTRWAADI 233 (330)
T ss_pred ec--CCCCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCc-------------CCCCccceeE
Confidence 11 1223467899999 7777766665 8999999998421111111000000000 0011122234
Q ss_pred eee--CcEEEEeec-CCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEe-cCCCeEEEEEccC
Q 017553 247 RWL--GDFILSKSV-DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG-NREGKIFVWELQS 322 (369)
Q Consensus 247 ~~~--~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~-~~dg~i~i~d~~~ 322 (369)
.++ +++++++.. ++.|.+|++..... ....+...... .....++++|+++ +|+++ ..++.|.+|+++.
T Consensus 234 ~~~pdg~~lyv~~~~~~~I~v~~i~~~~~-----~~~~~~~~~~~-~~p~~~~~~~dg~--~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 234 HITPDGRHLYACDRTASLISVFSVSEDGS-----VLSFEGHQPTE-TQPRGFNIDHSGK--YLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred EECCCCCEEEEecCCCCeEEEEEEeCCCC-----eEEEeEEEecc-ccCCceEECCCCC--EEEEEEccCCcEEEEEEcC
Confidence 444 777877754 78999999865421 11122322221 2445789999997 55544 4589999998853
No 211
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=1.2e-16 Score=125.42 Aligned_cols=271 Identities=11% Similarity=0.145 Sum_probs=194.2
Q ss_pred CCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeee-ccCCcccceeEEEeeecCCCccEEEEeecCCe
Q 017553 32 GKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSY-VDEDKEESFYTVSWACNVDGIPFLVAGGINGI 109 (369)
Q Consensus 32 h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~ 109 (369)
-...|..++|.-++ ..+.+..++.+. +..+...+......+... .......+|..++. .+| .|++|-.+|.
T Consensus 54 ~~~ris~l~~~~d~--~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~---~dg--~Litc~~sG~ 126 (412)
T KOG3881|consen 54 ELDRISSLLFGVDG--ETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKL---ADG--TLITCVSSGN 126 (412)
T ss_pred hhhhhhhheeecCC--ceeEeeccccCcccccccccCCccccccccccccccccccccchhh---cCC--EEEEEecCCc
Confidence 34568888887532 356666664554 777776665544443110 00123445555554 355 5888899999
Q ss_pred EEEEEcCCcc----ccceeeccccceEEEEecCCCCceEEEEeCC--CcEEEEEccCCcEEEEeeccCC------CCCcE
Q 017553 110 IRVIDVSNEK----LHKSFVGHGDSINEIRTQPLKPSLVVSASKD--ESVRLWNVQTGICILIFAGAGG------HRNEV 177 (369)
Q Consensus 110 i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--g~i~vwd~~~~~~~~~~~~~~~------~~~~v 177 (369)
+.+|..+.+. ....+..+ ..+..|.-++....++++|+.. ..+.+||++..+.+..-+.... -.-.+
T Consensus 127 l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~ 205 (412)
T KOG3881|consen 127 LQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWI 205 (412)
T ss_pred EEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeee
Confidence 9999987443 33344433 5577888888777888889999 8999999998877666543211 12346
Q ss_pred EEEEecCCC--ceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEE
Q 017553 178 LSVDFHPSD--IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFI 253 (369)
Q Consensus 178 ~~~~~~~~~--~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l 253 (369)
+++.|.+ + .+.|++++.-+.|++||.+.+ ..|+..+.....+++++... ++++
T Consensus 206 tdi~Fl~-g~~~~~fat~T~~hqvR~YDt~~q----------------------RRPV~~fd~~E~~is~~~l~p~gn~I 262 (412)
T KOG3881|consen 206 TDIRFLE-GSPNYKFATITRYHQVRLYDTRHQ----------------------RRPVAQFDFLENPISSTGLTPSGNFI 262 (412)
T ss_pred ccceecC-CCCCceEEEEecceeEEEecCccc----------------------CcceeEeccccCcceeeeecCCCcEE
Confidence 7889988 6 789999999999999999973 56777787778888887764 8899
Q ss_pred EEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeec
Q 017553 254 LSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSH 333 (369)
Q Consensus 254 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 333 (369)
++|..-+.+..||++.++. ....+.+..+.+.++..+|..+ ++++++-|..|||+|+++.+. +.....
T Consensus 263 y~gn~~g~l~~FD~r~~kl--------~g~~~kg~tGsirsih~hp~~~--~las~GLDRyvRIhD~ktrkl--l~kvYv 330 (412)
T KOG3881|consen 263 YTGNTKGQLAKFDLRGGKL--------LGCGLKGITGSIRSIHCHPTHP--VLASCGLDRYVRIHDIKTRKL--LHKVYV 330 (412)
T ss_pred EEecccchhheecccCcee--------eccccCCccCCcceEEEcCCCc--eEEeeccceeEEEeecccchh--hhhhhh
Confidence 9999999999999999874 3444777788999999999986 999999999999999999643 222211
Q ss_pred CCCccceEEEEecCC
Q 017553 334 AQSKSPIRQTAMSYD 348 (369)
Q Consensus 334 ~~~~~~v~~~~~s~~ 348 (369)
. +.++++-+.++
T Consensus 331 K---s~lt~il~~~~ 342 (412)
T KOG3881|consen 331 K---SRLTFILLRDD 342 (412)
T ss_pred h---ccccEEEecCC
Confidence 1 34666666543
No 212
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=3.9e-17 Score=131.55 Aligned_cols=261 Identities=15% Similarity=0.169 Sum_probs=185.8
Q ss_pred CcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceee-ccccceEEEEecCCC-CceEEEEeCCCcEEEEEc
Q 017553 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFV-GHGDSINEIRTQPLK-PSLVVSASKDESVRLWNV 158 (369)
Q Consensus 81 ~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~vwd~ 158 (369)
.|.+.|..+.|. ..|. .|++|+.|..|.+||+..++....+. +|...|..-.|-|.. ..-+++++.||.|++=.+
T Consensus 140 ~H~GcVntV~FN--~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i 216 (559)
T KOG1334|consen 140 KHKGCVNTVHFN--QRGD-VLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEI 216 (559)
T ss_pred CCCCccceeeec--ccCc-eeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeee
Confidence 688999999887 8898 99999999999999999888776665 799999988898853 346899999999999877
Q ss_pred cCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeecc
Q 017553 159 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV 238 (369)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (369)
.....+...+....|.++|..++.-|.....|.+++.|+.+.-+|++...... .+.....
T Consensus 217 ~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~--------------------~~~cr~~ 276 (559)
T KOG1334|consen 217 LETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAE--------------------KFVCREA 276 (559)
T ss_pred ccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccc--------------------eeeeecc
Confidence 55444433333336999999999999888999999999999999998832110 0111122
Q ss_pred CCC---ceeeeeee---CcEEEEeecCCeEEEecCCCCCCCCCCCcccee---eeccCCCCCeeEEEEeecCCccEEEEe
Q 017553 239 HSN---YVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADIL---QKYPVPECDIWFIKFSCDFHYNAAAIG 309 (369)
Q Consensus 239 ~~~---~v~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~s~~~~~~~l~~~ 309 (369)
+.. ....++.+ ...+++++.|-.+++||.+........+..... .........|++++|+.++. -|.++
T Consensus 277 ~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~s--ElLaS 354 (559)
T KOG1334|consen 277 DEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGS--ELLAS 354 (559)
T ss_pred CCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCcc--ceeee
Confidence 222 33444444 558999999999999999876654322211100 01112235799999998775 56666
Q ss_pred cCCCeEEEEEccCCCc----------eeEEE-eecCCCc--cceEEEEe-cCCCCEEEEeecCCeEEEEecCC
Q 017553 310 NREGKIFVWELQSSPP----------VLIAR-LSHAQSK--SPIRQTAM-SYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 310 ~~dg~i~i~d~~~~~~----------~~~~~-~~~~~~~--~~v~~~~~-s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
..|-.|++|.-.-+.. ..+.. ++ +|. ..|..+-| -|...|+++|+.=|.|.||+-.+
T Consensus 355 YnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYK--GHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t 425 (559)
T KOG1334|consen 355 YNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYK--GHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKT 425 (559)
T ss_pred ecccceEEeccccccCCCCCCCcchhhccchhhc--ccccccccceeeeccCccceEEecCccceEEEEecch
Confidence 7778899996543321 12222 33 443 34777766 47889999999999999999654
No 213
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.75 E-value=8.3e-17 Score=119.78 Aligned_cols=259 Identities=14% Similarity=0.117 Sum_probs=164.6
Q ss_pred ccceeeeeecc-cCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEee---ec
Q 017553 20 KREYRVTNKLQ-EGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWA---CN 94 (369)
Q Consensus 20 ~~~~~~~~~~~-~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~ 94 (369)
....+....++ .|...|+.+.--| +..|.+-+.|. +.+|++..+..+..- .-.++++.|+ ..
T Consensus 42 lqt~r~~~~~r~~g~~~it~lq~~p-----~d~l~tqgRd~~L~lw~ia~s~~i~i~--------Si~~nslgFCrfSl~ 108 (323)
T KOG0322|consen 42 LQTERDLPLIRLFGRLFITNLQSIP-----NDSLDTQGRDPLLILWTIAYSAFISIH--------SIVVNSLGFCRFSLV 108 (323)
T ss_pred eecCccchhhhhhccceeeceeecC-----CcchhhcCCCceEEEEEccCcceEEEe--------eeeccccccccceec
Confidence 33344444556 5778899999888 57788888888 999998775544332 2233344444 22
Q ss_pred CCCcc---EEEEeecCC-eEEEEEcCCcccccee----eccccceEEEEecCCCCc--eEEEEeCCCcEEEEEccCCcEE
Q 017553 95 VDGIP---FLVAGGING-IIRVIDVSNEKLHKSF----VGHGDSINEIRTQPLKPS--LVVSASKDESVRLWNVQTGICI 164 (369)
Q Consensus 95 ~~g~~---~l~~~~~dg-~i~vwd~~~~~~~~~~----~~~~~~v~~~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~~~ 164 (369)
+++++ .++.-+... .+++-|......++.. .+..+.+.+..+.-..+. ++++|-++|.|.+||+.++..+
T Consensus 109 ~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~ 188 (323)
T KOG0322|consen 109 KKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKI 188 (323)
T ss_pred cCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCcee
Confidence 22221 122211111 1222232221111111 123456777775442333 5678889999999999988444
Q ss_pred EEeec-------cCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeec
Q 017553 165 LIFAG-------AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS 237 (369)
Q Consensus 165 ~~~~~-------~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (369)
..+.. ...|..+|.++.|.+ .-..=++|+.+..+..|.+......... .....+.
T Consensus 189 ~~~~~~~kv~~~~ash~qpvlsldyas-~~~rGisgga~dkl~~~Sl~~s~gslq~-----------------~~e~~lk 250 (323)
T KOG0322|consen 189 IQLPQSSKVESPNASHKQPVLSLDYAS-SCDRGISGGADDKLVMYSLNHSTGSLQI-----------------RKEITLK 250 (323)
T ss_pred eccccccccccchhhccCcceeeeech-hhcCCcCCCccccceeeeeccccCcccc-----------------cceEEec
Confidence 33321 126899999999987 4455677888889999998763111110 0011111
Q ss_pred cCCCceeeeeeeCcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEE
Q 017553 238 VHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFV 317 (369)
Q Consensus 238 ~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i 317 (369)
...-.-..+..+++.+++++.|++||+|..++.. ++..++.|...|++++|+|+.+ ++|.++.|++|.+
T Consensus 251 npGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~---------pLAVLkyHsagvn~vAfspd~~--lmAaaskD~rISL 319 (323)
T KOG0322|consen 251 NPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLN---------PLAVLKYHSAGVNAVAFSPDCE--LMAAASKDARISL 319 (323)
T ss_pred CCCccceEEccCCcEEeecccCCcEEEEEeccCC---------chhhhhhhhcceeEEEeCCCCc--hhhhccCCceEEe
Confidence 1111122344458999999999999999999887 6888889999999999999975 9999999999999
Q ss_pred EEc
Q 017553 318 WEL 320 (369)
Q Consensus 318 ~d~ 320 (369)
|++
T Consensus 320 WkL 322 (323)
T KOG0322|consen 320 WKL 322 (323)
T ss_pred eec
Confidence 986
No 214
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.75 E-value=1.1e-17 Score=133.96 Aligned_cols=225 Identities=16% Similarity=0.214 Sum_probs=175.5
Q ss_pred EEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEe
Q 017553 88 TVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIF 167 (369)
Q Consensus 88 ~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 167 (369)
.+.+. .+|+ .|+.|+..|.|-.+|+.++++...+.. ...|.++.|.. +.+++|.+- ...++|||- .|..++.+
T Consensus 134 ~~~yt--rnGr-hlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LH-neq~~AVAQ-K~y~yvYD~-~GtElHCl 206 (545)
T KOG1272|consen 134 HLDYT--RNGR-HLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLH-NEQFFAVAQ-KKYVYVYDN-NGTELHCL 206 (545)
T ss_pred eeeec--CCcc-EEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhc-chHHHHhhh-hceEEEecC-CCcEEeeh
Confidence 34444 8899 999999999999999999999888873 46799999987 666666655 478999995 57888888
Q ss_pred eccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeee
Q 017553 168 AGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNR 247 (369)
Q Consensus 168 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 247 (369)
+ ....|..+.|.| ...+|++++..|.++.-|+..++. +..+....+.+..+.
T Consensus 207 k----~~~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~Gkl-----------------------Va~~~t~~G~~~vm~ 258 (545)
T KOG1272|consen 207 K----RHIRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKL-----------------------VASIRTGAGRTDVMK 258 (545)
T ss_pred h----hcCchhhhcccc-hhheeeecccCCceEEEeechhhh-----------------------hHHHHccCCccchhh
Confidence 7 556889999999 888999999999999999998542 333333344444444
Q ss_pred ee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCc
Q 017553 248 WL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP 325 (369)
Q Consensus 248 ~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~ 325 (369)
-+ ...+-.|...|+|.+|...+.+ ++..+-.|.++|.++++.++|. ++++.+.|..++|||++...
T Consensus 259 qNP~NaVih~GhsnGtVSlWSP~ske---------PLvKiLcH~g~V~siAv~~~G~--YMaTtG~Dr~~kIWDlR~~~- 326 (545)
T KOG1272|consen 259 QNPYNAVIHLGHSNGTVSLWSPNSKE---------PLVKILCHRGPVSSIAVDRGGR--YMATTGLDRKVKIWDLRNFY- 326 (545)
T ss_pred cCCccceEEEcCCCceEEecCCCCcc---------hHHHHHhcCCCcceEEECCCCc--EEeecccccceeEeeecccc-
Confidence 43 4577889999999999999887 6778888999999999999996 99999999999999999874
Q ss_pred eeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEe
Q 017553 326 VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 365 (369)
Q Consensus 326 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~ 365 (369)
.+..+.. ..+...+++|..| +|| ++....|.||.
T Consensus 327 -ql~t~~t---p~~a~~ls~Sqkg-lLA-~~~G~~v~iw~ 360 (545)
T KOG1272|consen 327 -QLHTYRT---PHPASNLSLSQKG-LLA-LSYGDHVQIWK 360 (545)
T ss_pred -ccceeec---CCCcccccccccc-cee-eecCCeeeeeh
Confidence 2222221 2456778898776 344 44555789995
No 215
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=1.1e-15 Score=131.46 Aligned_cols=230 Identities=17% Similarity=0.106 Sum_probs=145.8
Q ss_pred EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecC---CeEEEEEcCCccc--cceeeccccceEEE
Q 017553 60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN---GIIRVIDVSNEKL--HKSFVGHGDSINEI 134 (369)
Q Consensus 60 v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~d---g~i~vwd~~~~~~--~~~~~~~~~~v~~~ 134 (369)
|.+||..... ...+. .+...+...+|+ |||+ .|+..+.+ ..|++||+.+++. +..+.+| ...+
T Consensus 186 i~i~d~dg~~-~~~lt-----~~~~~v~~p~wS--PDG~-~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~ 253 (429)
T PRK01742 186 VRVADYDGFN-QFIVN-----RSSQPLMSPAWS--PDGS-KLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAP 253 (429)
T ss_pred EEEECCCCCC-ceEec-----cCCCccccceEc--CCCC-EEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCce
Confidence 9999965443 33333 355677788888 9999 66665533 4799999987753 3334433 3468
Q ss_pred EecCCCCceEEEE-eCCCcEEEE--EccCCcEEEEeeccCCCCCcEEEEEecCCCceEEE-EEeeCCcEEEEEccCceee
Q 017553 135 RTQPLKPSLVVSA-SKDESVRLW--NVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIA-SCGMDNTVKIWSMKEFWTY 210 (369)
Q Consensus 135 ~~~~~~~~~l~s~-~~dg~i~vw--d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~d~~v~i~d~~~~~~~ 210 (369)
+|+| +++.|+.+ +.+|.+.|| |+.+++. ..+. .+...+....|+| ++..|+ ++..++...+|+++.....
T Consensus 254 ~wSP-DG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt---~~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~~~ 327 (429)
T PRK01742 254 AFSP-DGSRLAFASSKDGVLNIYVMGANGGTP-SQLT---SGAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASGGG 327 (429)
T ss_pred eECC-CCCEEEEEEecCCcEEEEEEECCCCCe-Eeec---cCCCCcCCEEECC-CCCEEEEEECCCCCceEEEEECCCCC
Confidence 9999 77776665 468876655 6655554 3444 4666788999999 666555 4446788889887652110
Q ss_pred eeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCC
Q 017553 211 VEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP 288 (369)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 288 (369)
...+ .+.. ....|+ |++++..+.++ +.+||+.+++.. .+. ..
T Consensus 328 ----------------------~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~-------~lt--~~- 371 (429)
T PRK01742 328 ----------------------ASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTE-------VLS--ST- 371 (429)
T ss_pred ----------------------eEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeE-------Eec--CC-
Confidence 0111 1221 233444 77887777655 556898876521 111 11
Q ss_pred CCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCC
Q 017553 289 ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYD 348 (369)
Q Consensus 289 ~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 348 (369)
.......|+|+++ +|+.++.++.+.+|++.+........+. .|.+.+...+|+|-
T Consensus 372 -~~~~~~~~sPdG~--~i~~~s~~g~~~~l~~~~~~G~~~~~l~--~~~g~~~~p~wsp~ 426 (429)
T PRK01742 372 -FLDESPSISPNGI--MIIYSSTQGLGKVLQLVSADGRFKARLP--GSDGQVKFPAWSPY 426 (429)
T ss_pred -CCCCCceECCCCC--EEEEEEcCCCceEEEEEECCCCceEEcc--CCCCCCCCcccCCC
Confidence 1224578999997 7888888888888876432224455565 56677888999984
No 216
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.73 E-value=7.8e-16 Score=125.71 Aligned_cols=213 Identities=17% Similarity=0.213 Sum_probs=152.5
Q ss_pred CccEEEEecCCcEEEEEecCCceeEE-EeeeccCCcccceeEEEee---ecCCCccEEEEeecCCeEEEEEcCCccccce
Q 017553 48 YFNVFATVGGNRVTVYQCLEGGVIAA-LQSYVDEDKEESFYTVSWA---CNVDGIPFLVAGGINGIIRVIDVSNEKLHKS 123 (369)
Q Consensus 48 ~~~~la~~~~~~v~iw~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~---~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~ 123 (369)
.|++|+..-.+.+.+|+...+..+.. +.... -....-.|-+|. -.+++- -|+.|-..|.|++.|....+..+.
T Consensus 134 ~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~--y~gt~P~cHdfn~~~a~~~g~-dllIGf~tGqvq~idp~~~~~skl 210 (636)
T KOG2394|consen 134 KGDRLCFNVGRELYVYSYRGAADLSKPIDKRE--YKGTSPTCHDFNSFTATPKGL-DLLIGFTTGQVQLIDPINFEVSKL 210 (636)
T ss_pred CCCEEEEecCCeEEEEEccCcchhccchhhhc--ccCCCCceecccccccCCCCc-ceEEeeccCceEEecchhhHHHHh
Confidence 57888887777799999764322211 11000 011112223332 125565 688888899999999766332222
Q ss_pred ee----ccccceEEEEecCCCCceEEEEeCCCcEEEEEccC--------------Cc--------------EEEEeeccC
Q 017553 124 FV----GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT--------------GI--------------CILIFAGAG 171 (369)
Q Consensus 124 ~~----~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~--------------~~--------------~~~~~~~~~ 171 (369)
+. -....|+|+.|-|.+...++.+-.+|.+.+||..- +. ++..+.
T Consensus 211 fne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~--- 287 (636)
T KOG2394|consen 211 FNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWH--- 287 (636)
T ss_pred hhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeE---
Confidence 22 13468999999998888889999999999997641 11 111111
Q ss_pred CCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--
Q 017553 172 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-- 249 (369)
Q Consensus 172 ~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-- 249 (369)
--++.|..++|+| ++.+|++.+.||.+||||..+ ...+..+...-+...|++|+
T Consensus 288 ~~~g~in~f~FS~-DG~~LA~VSqDGfLRvF~fdt-----------------------~eLlg~mkSYFGGLLCvcWSPD 343 (636)
T KOG2394|consen 288 IGEGSINEFAFSP-DGKYLATVSQDGFLRIFDFDT-----------------------QELLGVMKSYFGGLLCVCWSPD 343 (636)
T ss_pred eccccccceeEcC-CCceEEEEecCceEEEeeccH-----------------------HHHHHHHHhhccceEEEEEcCC
Confidence 1245788999999 999999999999999999998 33344455566789999998
Q ss_pred CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEee
Q 017553 250 GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSC 299 (369)
Q Consensus 250 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 299 (369)
|++|++|+.|.-|.||.+...+ .+..-++|+..|..++|.|
T Consensus 344 GKyIvtGGEDDLVtVwSf~erR---------VVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 344 GKYIVTGGEDDLVTVWSFEERR---------VVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ccEEEecCCcceEEEEEeccce---------EEEeccccccceeeEeecc
Confidence 8999999999999999999877 7889999999999999987
No 217
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.72 E-value=5.4e-15 Score=132.03 Aligned_cols=267 Identities=11% Similarity=0.172 Sum_probs=170.1
Q ss_pred EEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCcc-------ccceeeccccceEEEE
Q 017553 63 YQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK-------LHKSFVGHGDSINEIR 135 (369)
Q Consensus 63 w~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~-------~~~~~~~~~~~v~~~~ 135 (369)
|+ .+|..+..+. .|...+..++.+ ++...++++|+.||+|++|+...-. ...++..-...+.++.
T Consensus 1034 W~-p~G~lVAhL~-----Ehs~~v~k~a~s--~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt 1105 (1431)
T KOG1240|consen 1034 WN-PRGILVAHLH-----EHSSAVIKLAVS--SEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVT 1105 (1431)
T ss_pred CC-ccceEeehhh-----hccccccceeec--CCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEE
Confidence 44 3455555555 466677767665 4442399999999999999986432 1222222456788999
Q ss_pred ecCCCCceEEEEeCCCcEEEEEccCC--cEEEE--eeccCCC-CCcE-EEEEecCCCce-EEEEEeeCCcEEEEEccCce
Q 017553 136 TQPLKPSLVVSASKDESVRLWNVQTG--ICILI--FAGAGGH-RNEV-LSVDFHPSDIY-RIASCGMDNTVKIWSMKEFW 208 (369)
Q Consensus 136 ~~~~~~~~l~s~~~dg~i~vwd~~~~--~~~~~--~~~~~~~-~~~v-~~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~ 208 (369)
..+ .++.+|.++.||.|++.++... +.... ......+ .+.+ ...+|...... .++.+..-+.|..||++...
T Consensus 1106 ~~~-~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~ 1184 (1431)
T KOG1240|consen 1106 MCG-NGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRH 1184 (1431)
T ss_pred ecc-CCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhh
Confidence 998 8899999999999999998752 11110 0001112 2233 33344432344 78888888999999999832
Q ss_pred eeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeecc
Q 017553 209 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP 286 (369)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 286 (369)
. .-........+.|++++.+ +++++.|...|.+.+||++-+. ++..+.
T Consensus 1185 ~---------------------~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~---------~i~sw~ 1234 (1431)
T KOG1240|consen 1185 D---------------------AWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRV---------PILSWE 1234 (1431)
T ss_pred h---------------------HHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCc---------eeeccc
Confidence 1 1111233456778888887 7899999999999999999765 333333
Q ss_pred C-CCCCeeEEEEeecCC--ccEEEEec-CCCeEEEEEccCCCceeEEEee-----------cC----CCccceEEEEecC
Q 017553 287 V-PECDIWFIKFSCDFH--YNAAAIGN-REGKIFVWELQSSPPVLIARLS-----------HA----QSKSPIRQTAMSY 347 (369)
Q Consensus 287 ~-~~~~i~~~~~s~~~~--~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~-----------~~----~~~~~v~~~~~s~ 347 (369)
. +..++..+..+|-.+ ...+.+++ ..+.|.+|++.++....+.-.. .. .+.-......+..
T Consensus 1235 ~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~ 1314 (1431)
T KOG1240|consen 1235 HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCE 1314 (1431)
T ss_pred CcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeeccc
Confidence 2 236677777666543 22444444 6788999999988543322111 00 1111222334444
Q ss_pred CCCEEEEeecCCeEEEEecCC
Q 017553 348 DGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 348 ~~~~l~s~~~dg~i~vw~~~~ 368 (369)
-+..+.+|+.|..|+.||...
T Consensus 1315 ~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1315 KNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred CCceeeecCCccceeeccCCC
Confidence 456899999999999999753
No 218
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=3e-16 Score=128.74 Aligned_cols=226 Identities=13% Similarity=0.153 Sum_probs=164.0
Q ss_pred ccc---ccccccceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCC------ceeEEEeeeccCCc
Q 017553 13 GSL---TPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEG------GVIAALQSYVDEDK 82 (369)
Q Consensus 13 ~~~---~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~------~~~~~~~~~~~~~~ 82 (369)
|.| .......+++..+|++|.++|.|+++.+ .++.+.+|+-|+ |+.|++... .....+.... ..|
T Consensus 321 WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~----n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l-~Gh 395 (577)
T KOG0642|consen 321 WNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPS----NGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTL-LGH 395 (577)
T ss_pred hhhcccCCccccceeeeEEEecccCceEEEEecC----CceEEEeeccCceeeeeccCCCCCcccccCcchhccce-ecc
Confidence 666 4555678889999999999999999998 689999999999 999965421 1112222221 268
Q ss_pred ccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeec--cccceEEEEecCCCCceEEEEeCCCcEEEEEccC
Q 017553 83 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG--HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 160 (369)
Q Consensus 83 ~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 160 (369)
.+.|+.++++ +... .|++++.||+++.|+.....+ .++.. ..+.-.++.+-.....+.++...-+.--+.++..
T Consensus 396 tdavw~l~~s--~~~~-~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev 471 (577)
T KOG0642|consen 396 TDAVWLLALS--STKD-RLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEV 471 (577)
T ss_pred ccceeeeeec--cccc-ceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhh
Confidence 8899999988 4444 799999999999999866655 33332 2234456666542323444444445455556655
Q ss_pred CcEEEEeeccC----CCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeee
Q 017553 161 GICILIFAGAG----GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA 236 (369)
Q Consensus 161 ~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (369)
+..+..+.... .....+..+.++| +..+.+++..|+.|+++|..+ ..++...
T Consensus 472 ~s~~~~~~s~~~~~~~~~~~in~vVs~~-~~~~~~~~hed~~Ir~~dn~~-----------------------~~~l~s~ 527 (577)
T KOG0642|consen 472 VSDLLIFESSASPGPRRYPQINKVVSHP-TADITFTAHEDRSIRFFDNKT-----------------------GKILHSM 527 (577)
T ss_pred hhheeeccccCCCcccccCccceEEecC-CCCeeEecccCCceecccccc-----------------------cccchhe
Confidence 55555544211 1123467788898 888999999999999999998 4567788
Q ss_pred ccCCCceeeeeee--CcEEEEeecCCeEEEecCCCCC
Q 017553 237 SVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKE 271 (369)
Q Consensus 237 ~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~ 271 (369)
..|...++++++. |-+|++++.|+.+++|.+....
T Consensus 528 ~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 528 VAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred eeccceecceeecCCCceEEeecCCceeehhhccchh
Confidence 8899999999997 7799999999999999987654
No 219
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.71 E-value=8.3e-15 Score=110.97 Aligned_cols=268 Identities=15% Similarity=0.133 Sum_probs=184.1
Q ss_pred EEEEEecCCceeE--EEeeeccCCcccceeEEEeeecCCCcc-EEEEeecCCeEEEEEcCCccccceeeccc------cc
Q 017553 60 VTVYQCLEGGVIA--ALQSYVDEDKEESFYTVSWACNVDGIP-FLVAGGINGIIRVIDVSNEKLHKSFVGHG------DS 130 (369)
Q Consensus 60 v~iw~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~g~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~------~~ 130 (369)
+.+|++.+.+... .++. .....++.+.|+.-+.+.. .++-+...|.|.++..........+++-. ..
T Consensus 48 l~Lys~~d~~~~~l~~~q~----~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~ 123 (339)
T KOG0280|consen 48 LHLYSLEDMKLSPLDTLQC----TDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVE 123 (339)
T ss_pred eEEEeecccccCccceeee----ecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhee
Confidence 8888887665444 3332 2445677788886554442 56777788999999876544433333211 13
Q ss_pred eEEEEecCCCCceEEEEeCCCcEEEEEccCCcEE--EEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCce
Q 017553 131 INEIRTQPLKPSLVVSASKDESVRLWNVQTGICI--LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 208 (369)
Q Consensus 131 v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~ 208 (369)
..++.|++ .+..++++-.+|.+.+-+....... +.++ .|..+.....|+..+.+++.+|+.|+.+..||+|.+.
T Consensus 124 ~lslD~~~-~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk---~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~ 199 (339)
T KOG0280|consen 124 ALSLDIST-SGTKIFVSDSRGSISGVYETEMVLEKVQTWK---VHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK 199 (339)
T ss_pred eeEEEeec-cCceEEEEcCCCcEEEEecceeeeeeccccc---ccceeeeeeecccCCCceEEecCCCceEEEEEecCCc
Confidence 45788998 7888999999999996665444332 2455 7999999999987788999999999999999999532
Q ss_pred eeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee---CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeec
Q 017553 209 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY 285 (369)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 285 (369)
. ........|...|.++.-+ +.++++|+.|..|++||.++..+ ++..-
T Consensus 200 ~---------------------~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k--------Pl~~~ 250 (339)
T KOG0280|consen 200 T---------------------FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK--------PLFKA 250 (339)
T ss_pred c---------------------eeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccC--------ccccC
Confidence 1 1122345688888888776 56999999999999999997654 22222
Q ss_pred cCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEee-cCCCccceEEEEecCCCCEEEEee-cCCeEE-
Q 017553 286 PVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLS-HAQSKSPIRQTAMSYDGSTILSCC-EDGAIW- 362 (369)
Q Consensus 286 ~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~- 362 (369)
+. .+.|+.+..+|.-...+|+++-.+| .+|-+.+.+..+....+. ...|.+-...-.|......||||+ .|..++
T Consensus 251 ~v-~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~ 328 (339)
T KOG0280|consen 251 KV-GGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQ 328 (339)
T ss_pred cc-ccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceee
Confidence 22 3789999999987644455555554 788888776544222222 346667777777755556889876 677755
Q ss_pred EEec
Q 017553 363 RWDA 366 (369)
Q Consensus 363 vw~~ 366 (369)
+|-.
T Consensus 329 ~Wl~ 332 (339)
T KOG0280|consen 329 LWLH 332 (339)
T ss_pred eeee
Confidence 7754
No 220
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=5.9e-15 Score=121.64 Aligned_cols=282 Identities=12% Similarity=0.100 Sum_probs=187.3
Q ss_pred cCCcCeEEEEEeeccCCCccEEEEecCCc--EEEEEecCCceeEEEeeeccCCcccceeEEEeeec-CCCccEEEEeecC
Q 017553 31 EGKRPLYAVVFNFIDSRYFNVFATVGGNR--VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACN-VDGIPFLVAGGIN 107 (369)
Q Consensus 31 ~h~~~v~~~~~s~~~~~~~~~la~~~~~~--v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~g~~~l~~~~~d 107 (369)
+|...-+.|..+| ||+++.+.|.-. |++||+..... .+..+ ....+ +.|.+- -|-. -++.-..|
T Consensus 49 e~p~ast~ik~s~----DGqY~lAtG~YKP~ikvydlanLSL--KFERh----lDae~--V~feiLsDD~S-K~v~L~~D 115 (703)
T KOG2321|consen 49 EMPTASTRIKVSP----DGQYLLATGTYKPQIKVYDLANLSL--KFERH----LDAEV--VDFEILSDDYS-KSVFLQND 115 (703)
T ss_pred CCccccceeEecC----CCcEEEEecccCCceEEEEccccee--eeeec----ccccc--eeEEEeccchh-hheEeecC
Confidence 5788899999999 688877766555 99999765443 12222 11122 222211 2222 34444556
Q ss_pred CeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCc
Q 017553 108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDI 187 (369)
Q Consensus 108 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 187 (369)
.+|.+-.. -|. ...++ -...-.+++++.....+++. +....|+-++++.|+.+..+. ...+.++++..++ ..
T Consensus 116 R~IefHak-~G~-hy~~R-IP~~GRDm~y~~~scDly~~-gsg~evYRlNLEqGrfL~P~~---~~~~~lN~v~in~-~h 187 (703)
T KOG2321|consen 116 RTIEFHAK-YGR-HYRTR-IPKFGRDMKYHKPSCDLYLV-GSGSEVYRLNLEQGRFLNPFE---TDSGELNVVSINE-EH 187 (703)
T ss_pred ceeeehhh-cCe-eeeee-cCcCCccccccCCCccEEEe-ecCcceEEEEccccccccccc---cccccceeeeecC-cc
Confidence 66655432 121 11111 12334567777634454444 444678889999999998888 4668999999998 77
Q ss_pred eEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCC-----ceeeeeee--CcEEEEeecCC
Q 017553 188 YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN-----YVDCNRWL--GDFILSKSVDN 260 (369)
Q Consensus 188 ~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~--~~~l~~~~~d~ 260 (369)
.+|++|+.+|.|.+||.+......... .......|+. .|+++.|+ |-.+++|..+|
T Consensus 188 gLla~Gt~~g~VEfwDpR~ksrv~~l~-----------------~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G 250 (703)
T KOG2321|consen 188 GLLACGTEDGVVEFWDPRDKSRVGTLD-----------------AASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTG 250 (703)
T ss_pred ceEEecccCceEEEecchhhhhheeee-----------------cccccCCCccccccCcceEEEecCCceeEEeeccCC
Confidence 889999999999999999832111100 0111222333 48999997 56899999999
Q ss_pred eEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccce
Q 017553 261 EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPI 340 (369)
Q Consensus 261 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v 340 (369)
.+.|||+++.++ .+..-.....+|..+.|.+.+....+++ .....++|||-.++++. ..+. ....+
T Consensus 251 ~v~iyDLRa~~p--------l~~kdh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~--asiE---pt~~l 316 (703)
T KOG2321|consen 251 SVLIYDLRASKP--------LLVKDHGYELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPM--ASIE---PTSDL 316 (703)
T ss_pred cEEEEEcccCCc--------eeecccCCccceeeecccccCCCceEEe-cchHHhhhcccccCCce--eecc---ccCCc
Confidence 999999999875 4444445567888999987755445554 45567999999999643 3333 22569
Q ss_pred EEEEecCCCCEEEEeecCCeEEEE
Q 017553 341 RQTAMSYDGSTILSCCEDGAIWRW 364 (369)
Q Consensus 341 ~~~~~s~~~~~l~s~~~dg~i~vw 364 (369)
+.+|+-|++-+++++-.++.+..|
T Consensus 317 ND~C~~p~sGm~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 317 NDFCFVPGSGMFFTANESSKMHTY 340 (703)
T ss_pred CceeeecCCceEEEecCCCcceeE
Confidence 999999999999999888876554
No 221
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.71 E-value=4.1e-16 Score=127.31 Aligned_cols=169 Identities=17% Similarity=0.209 Sum_probs=126.2
Q ss_pred EEEEecCCcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCc------------
Q 017553 51 VFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE------------ 118 (369)
Q Consensus 51 ~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~------------ 118 (369)
+|+--+.+.|.+.|....+..+.+. ......+..|+++.|. |.+...++++-.+|.+++||..-.
T Consensus 188 llIGf~tGqvq~idp~~~~~sklfn-e~r~i~ktsvT~ikWv--pg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k 264 (636)
T KOG2394|consen 188 LLIGFTTGQVQLIDPINFEVSKLFN-EERLINKSSVTCIKWV--PGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALK 264 (636)
T ss_pred eEEeeccCceEEecchhhHHHHhhh-hcccccccceEEEEEE--eCCCceEEEEEecCceEEeeccccccCCCCcccccC
Confidence 3433334448887765522222111 1112345789999999 544446788888999999975211
Q ss_pred ----------------cccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEe
Q 017553 119 ----------------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDF 182 (369)
Q Consensus 119 ----------------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~ 182 (369)
.++..+.--.+.|..++|+| |+.+||+.+.||.+||+|..+.+.+..++ ..-+...|++|
T Consensus 265 ~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~-DG~~LA~VSqDGfLRvF~fdt~eLlg~mk---SYFGGLLCvcW 340 (636)
T KOG2394|consen 265 DGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSP-DGKYLATVSQDGFLRIFDFDTQELLGVMK---SYFGGLLCVCW 340 (636)
T ss_pred CCCeeEEeeeeccccCCccceeEeccccccceeEcC-CCceEEEEecCceEEEeeccHHHHHHHHH---hhccceEEEEE
Confidence 11122222345789999999 99999999999999999999888777776 46778999999
Q ss_pred cCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeeeC
Q 017553 183 HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLG 250 (369)
Q Consensus 183 ~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 250 (369)
+| |+++|++|+.|..|.||.+.. ...+..-.+|..+|..++|++
T Consensus 341 SP-DGKyIvtGGEDDLVtVwSf~e-----------------------rRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 341 SP-DGKYIVTGGEDDLVTVWSFEE-----------------------RRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred cC-CccEEEecCCcceEEEEEecc-----------------------ceEEEeccccccceeeEeecc
Confidence 99 999999999999999999988 456777889999999999985
No 222
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.71 E-value=2.1e-15 Score=116.58 Aligned_cols=252 Identities=13% Similarity=0.205 Sum_probs=178.2
Q ss_pred cceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEec-CCceeEEEeeeccCCcccceeEEEeeecCCCc
Q 017553 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCL-EGGVIAALQSYVDEDKEESFYTVSWACNVDGI 98 (369)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~ 98 (369)
.+..+.+.++||.+.|++...-|. .+-+.+.+.|. ++||--. .++....+.. ....++.++.+. ++..
T Consensus 12 ~kp~ll~~~eG~~d~vn~~~l~~~----e~gv~~~s~drtvrv~lkrds~q~wpsI~~----~mP~~~~~~~y~--~e~~ 81 (404)
T KOG1409|consen 12 KKPELLSKIEGSQDDVNAAILIPK----EEGVISVSEDRTVRVWLKRDSGQYWPSIYH----YMPSPCSAMEYV--SESR 81 (404)
T ss_pred cchhhhhhhcCchhhhhhheeccC----CCCeEEccccceeeeEEeccccccCchhhh----hCCCCceEeeee--ccce
Confidence 344566778999999999988884 46789999999 9999743 3444333332 233455555555 8887
Q ss_pred cEEEEeecCCeEEEEEcC----CccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCC
Q 017553 99 PFLVAGGINGIIRVIDVS----NEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR 174 (369)
Q Consensus 99 ~~l~~~~~dg~i~vwd~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 174 (369)
.|++|-.+|++.-+.+. .....+....|...+..+-|+. ....+++.+.|..+.---.+.+..+.... ..
T Consensus 82 -~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~----~~ 155 (404)
T KOG1409|consen 82 -RLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYN----FE 155 (404)
T ss_pred -EEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecC-CceeEEEeccccceEEEeeccCCcccceE----ee
Confidence 99999999999988764 3345667778999999999998 78899999999887554455554443222 11
Q ss_pred CcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcE
Q 017553 175 NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDF 252 (369)
Q Consensus 175 ~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~ 252 (369)
...+++.+.- .+...|-..|.|.+-.+... ...++..+.+|.+.+.++.|+ ...
T Consensus 156 ~~~t~~~~d~---~~~fvGd~~gqvt~lr~~~~---------------------~~~~i~~~~~h~~~~~~l~Wd~~~~~ 211 (404)
T KOG1409|consen 156 TPASALQFDA---LYAFVGDHSGQITMLKLEQN---------------------GCQLITTFNGHTGEVTCLKWDPGQRL 211 (404)
T ss_pred ccCCCCceee---EEEEecccccceEEEEEeec---------------------CCceEEEEcCcccceEEEEEcCCCcE
Confidence 1122222221 13444555566665554431 134677889999999999998 568
Q ss_pred EEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccC
Q 017553 253 ILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS 322 (369)
Q Consensus 253 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~ 322 (369)
+++|..|..+.+||+-..+. .......|...+..+...+.-+ .+.+++.||.|.+|+.+.
T Consensus 212 LfSg~~d~~vi~wdigg~~g--------~~~el~gh~~kV~~l~~~~~t~--~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 212 LFSGASDHSVIMWDIGGRKG--------TAYELQGHNDKVQALSYAQHTR--QLISCGEDGGIVVWNMNV 271 (404)
T ss_pred EEeccccCceEEEeccCCcc--------eeeeeccchhhhhhhhhhhhhe--eeeeccCCCeEEEEeccc
Confidence 99999999999999977653 4566667777777777766664 789999999999999753
No 223
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.70 E-value=8.9e-15 Score=113.24 Aligned_cols=307 Identities=18% Similarity=0.223 Sum_probs=189.5
Q ss_pred CCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCc-----eeEEEeeeccC-------CcccceeEEEeeecCCCc
Q 017553 32 GKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG-----VIAALQSYVDE-------DKEESFYTVSWACNVDGI 98 (369)
Q Consensus 32 h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~-----~~~~~~~~~~~-------~~~~~v~~~~~~~~~~g~ 98 (369)
-.+-|.+|.|.- +|++||+|..+| |.++.-.... ....++.+..+ .-++.|..+.|....+..
T Consensus 24 eadiis~vef~~----~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a 99 (433)
T KOG1354|consen 24 EADIISAVEFDH----YGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLA 99 (433)
T ss_pred hhcceeeEEeec----ccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCcc
Confidence 345689999998 699999999998 8888744322 12223322211 235678889998444444
Q ss_pred cEEEEeecCCeEEEEEcCCccccc-----------------------------------ee-eccccceEEEEecCCCCc
Q 017553 99 PFLVAGGINGIIRVIDVSNEKLHK-----------------------------------SF-VGHGDSINEIRTQPLKPS 142 (369)
Q Consensus 99 ~~l~~~~~dg~i~vwd~~~~~~~~-----------------------------------~~-~~~~~~v~~~~~~~~~~~ 142 (369)
.++..+.|.+|++|.+....... .+ .+|+--|++|.++. +..
T Consensus 100 -~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~E 177 (433)
T KOG1354|consen 100 -EFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKE 177 (433)
T ss_pred -EEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-ccc
Confidence 66677789999999875421100 00 14777899999998 777
Q ss_pred eEEEEeCCCcEEEEEccCCcEEEEeeccCCC-----CCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeec
Q 017553 143 LVVSASKDESVRLWNVQTGICILIFAGAGGH-----RNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTW 217 (369)
Q Consensus 143 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~ 217 (369)
.++++ .|=.|.+|+++--.....+.....+ ..-|++..|+|...++|+-.+..|+|++.|+|....-......+
T Consensus 178 t~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlf 256 (433)
T KOG1354|consen 178 TFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLF 256 (433)
T ss_pred eEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhh
Confidence 77765 4678999998743322222211122 34588999999888889989999999999999622111100000
Q ss_pred cCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCC-----
Q 017553 218 TDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPEC----- 290 (369)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~----- 290 (369)
.... .......+..--..|..+.|+ |+++++-. --+|++||++.... ++..++.|..
T Consensus 257 Eepe-------dp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~--------pv~t~~vh~~lr~kL 320 (433)
T KOG1354|consen 257 EEPE-------DPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAK--------PVETYPVHEYLRSKL 320 (433)
T ss_pred cccc-------CCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCC--------cceEEeehHhHHHHH
Confidence 0000 000111122223456778886 77887633 36899999976553 3444443321
Q ss_pred ----------CeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEE--------------Ee---ecCCC-------
Q 017553 291 ----------DIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA--------------RL---SHAQS------- 336 (369)
Q Consensus 291 ----------~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--------------~~---~~~~~------- 336 (369)
.-..++|+-++. ++++|+..+..++|++..+..+... .+ ...+.
T Consensus 321 c~lYEnD~IfdKFec~~sg~~~--~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~ 398 (433)
T KOG1354|consen 321 CSLYENDAIFDKFECSWSGNDS--YVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEIS 398 (433)
T ss_pred HHHhhccchhheeEEEEcCCcc--eEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccc
Confidence 123567777765 8999999999999996554321110 00 00011
Q ss_pred ------ccceEEEEecCCCCEEEEeecCCeEEEE
Q 017553 337 ------KSPIRQTAMSYDGSTILSCCEDGAIWRW 364 (369)
Q Consensus 337 ------~~~v~~~~~s~~~~~l~s~~~dg~i~vw 364 (369)
...+...+|+|..+.+|.+..+. ++||
T Consensus 399 vd~ldf~kkilh~aWhp~en~ia~aatnn-lyif 431 (433)
T KOG1354|consen 399 VDALDFRKKILHTAWHPKENSIAVAATNN-LYIF 431 (433)
T ss_pred cchhhhhhHHHhhccCCccceeeeeecCc-eEEe
Confidence 12355678999999999887654 6665
No 224
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=5e-14 Score=109.88 Aligned_cols=289 Identities=12% Similarity=0.145 Sum_probs=165.8
Q ss_pred cccccccccccccccccceeeeeecc-cCCcCeEEEEEeeccCCCccEEEEecCCcEEEEEecCCceeEE---------E
Q 017553 5 AIGCEPLVGSLTPSKKREYRVTNKLQ-EGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAA---------L 74 (369)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~~~~~---------~ 74 (369)
|.+..+.+.++.... . +....|+ .....|+|++|-|. .+..|+.|+..+|.||.......... .
T Consensus 114 ava~nddvVriy~ks--s-t~pt~Lks~sQrnvtclawRPl---saselavgCr~gIciW~~s~tln~~r~~~~~s~~~~ 187 (445)
T KOG2139|consen 114 AVATNDDVVRIYDKS--S-TCPTKLKSVSQRNVTCLAWRPL---SASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHL 187 (445)
T ss_pred hhhccCcEEEEeccC--C-CCCceecchhhcceeEEEeccC---CcceeeeeecceeEEEEcCcccccccccccccccch
Confidence 344444454444322 2 3333343 34567999999995 47799999999999998653221111 1
Q ss_pred eeeccCCcccceeEEEeeecCCCccEEEEee-cCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcE
Q 017553 75 QSYVDEDKEESFYTVSWACNVDGIPFLVAGG-INGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESV 153 (369)
Q Consensus 75 ~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i 153 (369)
+.+..+.| ..|..+.|. +||. .+++++ .|..|.|||.+++..+......-+.++-+.|+| ++.+|+++.-|+..
T Consensus 188 qvl~~pgh-~pVtsmqwn--~dgt-~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davf 262 (445)
T KOG2139|consen 188 QVLQDPGH-NPVTSMQWN--EDGT-ILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVF 262 (445)
T ss_pred hheeCCCC-ceeeEEEEc--CCCC-EEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEeccccee
Confidence 11222233 689999998 9998 777766 567899999999987665544567899999999 99999999999999
Q ss_pred EEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCcee--eeeeeeeccCCCCCCCCceeec
Q 017553 154 RLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWT--YVEKSFTWTDLPSKFPTKYVQF 231 (369)
Q Consensus 154 ~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 231 (369)
++|+........... --.+.|...+|+|.+..+|++++..- ++|.+.-..+ ........+.. ......
T Consensus 263 rlw~e~q~wt~erw~---lgsgrvqtacWspcGsfLLf~~sgsp--~lysl~f~~~~~~~~~~~~~k~~-----lliaDL 332 (445)
T KOG2139|consen 263 RLWQENQSWTKERWI---LGSGRVQTACWSPCGSFLLFACSGSP--RLYSLTFDGEDSVFLRPQSIKRV-----LLIADL 332 (445)
T ss_pred eeehhcccceeccee---ccCCceeeeeecCCCCEEEEEEcCCc--eEEEEeecCCCccccCcccceee-----eeeccc
Confidence 999654332222222 23459999999995555555555444 4444432111 10000000000 000000
Q ss_pred ceeee----ccCCCceeeeeee--CcEEEEeecCCe--------EEEecCCCCCCCCCCCcccee-eeccCCCCCeeEEE
Q 017553 232 PVFIA----SVHSNYVDCNRWL--GDFILSKSVDNE--------IVLWEPKMKEQSPGEGTADIL-QKYPVPECDIWFIK 296 (369)
Q Consensus 232 ~~~~~----~~~~~~v~~~~~~--~~~l~~~~~d~~--------i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~ 296 (369)
+.... ..--+.+.+++|+ |+++++.-..+. |.+||.+..-. .... ..+. .......+.
T Consensus 333 ~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~------vels~cg~i-~ge~P~~Is 405 (445)
T KOG2139|consen 333 QEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPP------VELSYCGMI-GGEYPAYIS 405 (445)
T ss_pred hhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCc------eEEEecccc-cCCCCceEE
Confidence 00011 1124577889997 889988765443 55666654321 0000 0011 111234456
Q ss_pred EeecCC-ccEEEEecCCCeEEEEEcc
Q 017553 297 FSCDFH-YNAAAIGNREGKIFVWELQ 321 (369)
Q Consensus 297 ~s~~~~-~~~l~~~~~dg~i~i~d~~ 321 (369)
|+|..+ ..+|..+=..|.+.-|++.
T Consensus 406 F~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 406 FGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred eeecccCCcEEEEEeccCceEeeeeE
Confidence 665322 2356666666777776654
No 225
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=5.3e-15 Score=127.38 Aligned_cols=219 Identities=13% Similarity=0.118 Sum_probs=139.2
Q ss_pred eecccCCcCeEEEEEeeccCCCccEEEEecCC---c-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEE
Q 017553 27 NKLQEGKRPLYAVVFNFIDSRYFNVFATVGGN---R-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLV 102 (369)
Q Consensus 27 ~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~---~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~ 102 (369)
+.+..|...+.+.+||| +|+.||..+.+ . |++||+.+++... +... .+.....+|+ |||+ .|+
T Consensus 197 ~~lt~~~~~v~~p~wSP----DG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~-----~g~~~~~~wS--PDG~-~La 263 (429)
T PRK01742 197 FIVNRSSQPLMSPAWSP----DGSKLAYVSFENKKSQLVVHDLRSGARKV-VASF-----RGHNGAPAFS--PDGS-RLA 263 (429)
T ss_pred eEeccCCCccccceEcC----CCCEEEEEEecCCCcEEEEEeCCCCceEE-EecC-----CCccCceeEC--CCCC-EEE
Confidence 34567888899999999 68888877532 2 9999987765432 2211 1122346676 9998 565
Q ss_pred Ee-ecCCeEEEE--EcCCccccceeeccccceEEEEecCCCCceEE-EEeCCCcEEEEEccCC-cEEEEeeccCCCCCcE
Q 017553 103 AG-GINGIIRVI--DVSNEKLHKSFVGHGDSINEIRTQPLKPSLVV-SASKDESVRLWNVQTG-ICILIFAGAGGHRNEV 177 (369)
Q Consensus 103 ~~-~~dg~i~vw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~v 177 (369)
.+ +.+|.+.|| |+.+++ ...+..+...+....|+| +++.|+ ++..++...||++... .....+. +..
T Consensus 264 ~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~----~~~-- 335 (429)
T PRK01742 264 FASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASGGGASLVG----GRG-- 335 (429)
T ss_pred EEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEec----CCC--
Confidence 54 567866555 655554 445566777788999999 676555 4456788888887543 2222222 333
Q ss_pred EEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEE
Q 017553 178 LSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILS 255 (369)
Q Consensus 178 ~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~ 255 (369)
....|+| +++.++..+.++ +.+||+.++.... ....+ ....+.|+ +++++.
T Consensus 336 ~~~~~Sp-DG~~ia~~~~~~-i~~~Dl~~g~~~~-----------------------lt~~~--~~~~~~~sPdG~~i~~ 388 (429)
T PRK01742 336 YSAQISA-DGKTLVMINGDN-VVKQDLTSGSTEV-----------------------LSSTF--LDESPSISPNGIMIIY 388 (429)
T ss_pred CCccCCC-CCCEEEEEcCCC-EEEEECCCCCeEE-----------------------ecCCC--CCCCceECCCCCEEEE
Confidence 4578999 778887777654 5669988743110 00011 11234454 889999
Q ss_pred eecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeec
Q 017553 256 KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCD 300 (369)
Q Consensus 256 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 300 (369)
++.++...+|++.... ......+..+...+...+|+|-
T Consensus 389 ~s~~g~~~~l~~~~~~-------G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 389 SSTQGLGKVLQLVSAD-------GRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EEcCCCceEEEEEECC-------CCceEEccCCCCCCCCcccCCC
Confidence 9999988887764221 0145666666677788888874
No 226
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=3.2e-15 Score=118.62 Aligned_cols=196 Identities=19% Similarity=0.170 Sum_probs=147.2
Q ss_pred EEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEc
Q 017553 37 YAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDV 115 (369)
Q Consensus 37 ~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~ 115 (369)
.+++|++ +|..+|+++.|+ ++||+......+.... .|..+|.++.|+ |||+ +|++-+.| ..+||+.
T Consensus 148 k~vaf~~----~gs~latgg~dg~lRv~~~Ps~~t~l~e~-----~~~~eV~DL~FS--~dgk-~lasig~d-~~~VW~~ 214 (398)
T KOG0771|consen 148 KVVAFNG----DGSKLATGGTDGTLRVWEWPSMLTILEEI-----AHHAEVKDLDFS--PDGK-FLASIGAD-SARVWSV 214 (398)
T ss_pred eEEEEcC----CCCEeeeccccceEEEEecCcchhhhhhH-----hhcCccccceeC--CCCc-EEEEecCC-ceEEEEe
Confidence 6899998 689999999999 9999987776665555 588899999998 9999 99999999 8999999
Q ss_pred CCccccceee--ccccceEEEEecCCCC---c--eEEEEeCCCcEEEEEccCCcE--EEEeeccCCCCCcEEEEEecCCC
Q 017553 116 SNEKLHKSFV--GHGDSINEIRTQPLKP---S--LVVSASKDESVRLWNVQTGIC--ILIFAGAGGHRNEVLSVDFHPSD 186 (369)
Q Consensus 116 ~~~~~~~~~~--~~~~~v~~~~~~~~~~---~--~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~ 186 (369)
+++..++... ..+.....+.|+. ++ . +++....-+.|+.||+..... .........-...|++++.++ +
T Consensus 215 ~~g~~~a~~t~~~k~~~~~~cRF~~-d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~-d 292 (398)
T KOG0771|consen 215 NTGAALARKTPFSKDEMFSSCRFSV-DNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD-D 292 (398)
T ss_pred ccCchhhhcCCcccchhhhhceecc-cCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcC-C
Confidence 9997666554 2334567778877 44 2 233334456777777643221 111111112345799999998 9
Q ss_pred ceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEEE
Q 017553 187 IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVL 264 (369)
Q Consensus 187 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i 264 (369)
+++++.|+.||.|.+++..+.+ .....-..|...|+.+.|+ .+++++.+.+....+
T Consensus 293 Gkf~AlGT~dGsVai~~~~~lq----------------------~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v 350 (398)
T KOG0771|consen 293 GKFLALGTMDGSVAIYDAKSLQ----------------------RLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAV 350 (398)
T ss_pred CcEEEEeccCCcEEEEEeceee----------------------eeEeehhhheeeeeeEEEcCCcCcccccccCCceeE
Confidence 9999999999999999998832 2334556799999999998 568888888888888
Q ss_pred ecCCC
Q 017553 265 WEPKM 269 (369)
Q Consensus 265 ~d~~~ 269 (369)
..+..
T Consensus 351 ~~l~v 355 (398)
T KOG0771|consen 351 TKLAV 355 (398)
T ss_pred EEEee
Confidence 87765
No 227
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.66 E-value=2.1e-15 Score=116.06 Aligned_cols=222 Identities=14% Similarity=0.130 Sum_probs=153.4
Q ss_pred eecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccC
Q 017553 92 ACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAG 171 (369)
Q Consensus 92 ~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 171 (369)
+|+|+|+ ++++.+.- .+.|-|.++-+..+.+.. -+.|.-+.|..+...+|.....|+.|.+|++...+-...+.
T Consensus 15 ~fSp~g~-yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckId--- 88 (447)
T KOG4497|consen 15 SFSPCGN-YIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKID--- 88 (447)
T ss_pred eECCCCC-eeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEec---
Confidence 3459999 99998865 788889888776666553 45678889998455566677889999999999888877777
Q ss_pred CCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--
Q 017553 172 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-- 249 (369)
Q Consensus 172 ~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-- 249 (369)
.-...+.+++|+|++...|.+...+-.|.+|.+.+... ..+......+..++|+
T Consensus 89 eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~------------------------~~~~~pK~~~kg~~f~~d 144 (447)
T KOG4497|consen 89 EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG------------------------YLLPHPKTNVKGYAFHPD 144 (447)
T ss_pred cCCCcceeeeECCCcceEeeeecceeEEEEEEecccee------------------------EEecccccCceeEEECCC
Confidence 57788999999994447777888899999999998321 1122222333455554
Q ss_pred CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEE
Q 017553 250 GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA 329 (369)
Q Consensus 250 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 329 (369)
|++.+.++.-.....+++...+ ....+..+....-..+.+.|+|||. .|+ +||---.- .+.
T Consensus 145 g~f~ai~sRrDCkdyv~i~~c~------~W~ll~~f~~dT~DltgieWsPdg~--~la---------Vwd~~Ley--kv~ 205 (447)
T KOG4497|consen 145 GQFCAILSRRDCKDYVQISSCK------AWILLKEFKLDTIDLTGIEWSPDGN--WLA---------VWDNVLEY--KVY 205 (447)
T ss_pred CceeeeeecccHHHHHHHHhhH------HHHHHHhcCCCcccccCceECCCCc--EEE---------Eecchhhh--eee
Confidence 7777776654332222322211 2335666666777788999999995 444 56533221 111
Q ss_pred EeecCCCccceEEEEecCCCCEEEEeecCCeEEEEe
Q 017553 330 RLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 365 (369)
Q Consensus 330 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~ 365 (369)
..+ ..-.+..++|+|.+++|+.|+.|+.+||-|
T Consensus 206 aYe---~~lG~k~v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 206 AYE---RGLGLKFVEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred eee---eccceeEEEeccccceEEeeccchhhhhhc
Confidence 111 114688899999999999999999998865
No 228
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.66 E-value=1.7e-15 Score=128.50 Aligned_cols=292 Identities=12% Similarity=0.124 Sum_probs=207.0
Q ss_pred CCcCeEEEEEeeccCCCccEEEEecCCcEEEEEecCCc-eeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeE
Q 017553 32 GKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGG-VIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGII 110 (369)
Q Consensus 32 h~~~v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i 110 (369)
-.+.+.++..+| .|+-+|.++.-++.+-|+...- ...-+. + ...-.|-.+.|++.|.-. +-++......-
T Consensus 23 v~~~~~a~si~p----~grdi~lAsr~gl~i~dld~p~~ppr~l~-h---~tpw~vad~qws~h~a~~-~wiVsts~qka 93 (1081)
T KOG0309|consen 23 VDGGFNAVSINP----SGRDIVLASRQGLYIIDLDDPFTPPRWLH-H---ITPWQVADVQWSPHPAKP-YWIVSTSNQKA 93 (1081)
T ss_pred ecCcccceeecc----ccchhhhhhhcCeEEEeccCCCCCceeee-c---cCcchhcceecccCCCCc-eeEEecCcchh
Confidence 356788999999 7899999999998888876543 333332 2 233456678899777766 44444445566
Q ss_pred EEEEcCCc---cccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCc-EEEEeeccCCCCCcEEEEEecCCC
Q 017553 111 RVIDVSNE---KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI-CILIFAGAGGHRNEVLSVDFHPSD 186 (369)
Q Consensus 111 ~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~ 186 (369)
.+|++... ..-..+.+|...|+.+.|+|+....+++++.|-.+..||+++.. ++.... .-......++|+..+
T Consensus 94 iiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~---~w~s~asqVkwnyk~ 170 (1081)
T KOG0309|consen 94 IIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTS---SWRSAASQVKWNYKD 170 (1081)
T ss_pred hhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeee---cccccCceeeecccC
Confidence 78988533 33456678999999999999999999999999999999998754 344443 234456789998756
Q ss_pred ceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee---CcEEEEeecCCeEE
Q 017553 187 IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIV 263 (369)
Q Consensus 187 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~ 263 (369)
++.++ .+..+.|.+||.+.+ ..++..+.+|...|..++|+ ...+.+++.|++|+
T Consensus 171 p~vla-sshg~~i~vwd~r~g----------------------s~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvk 227 (1081)
T KOG0309|consen 171 PNVLA-SSHGNDIFVWDLRKG----------------------STPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVK 227 (1081)
T ss_pred cchhh-hccCCceEEEeccCC----------------------CcceEEecccceeeehHHHhhhhhhhhcccCCCCcee
Confidence 66554 455678999999985 45777888899999999997 56889999999999
Q ss_pred EecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCC--------CceeEEEeecCC
Q 017553 264 LWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS--------PPVLIARLSHAQ 335 (369)
Q Consensus 264 i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~--------~~~~~~~~~~~~ 335 (369)
.||....... -........+++.-.+-|-+++.++.-.-.++.+.+++.++. ....+..+. +
T Consensus 228 fw~y~kSt~e--------~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~--G 297 (1081)
T KOG0309|consen 228 FWDYSKSTTE--------SKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFV--G 297 (1081)
T ss_pred eecccccccc--------cceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeec--C
Confidence 9998765421 112222345677777778776544443333335555554432 124566666 8
Q ss_pred CccceEEEEecCCC----------CEEEEeecCCeEEEEecCC
Q 017553 336 SKSPIRQTAMSYDG----------STILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 336 ~~~~v~~~~~s~~~----------~~l~s~~~dg~i~vw~~~~ 368 (369)
|...|....|-..+ -.|+|=+.|..+++|-+.+
T Consensus 298 H~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 298 HDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred cchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 88888777775422 2689999999999998764
No 229
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=3.3e-14 Score=117.32 Aligned_cols=245 Identities=16% Similarity=0.198 Sum_probs=158.4
Q ss_pred cccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccc--cceEEEEecCCCCceEEEEeCCCcEEEEEcc
Q 017553 82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHG--DSINEIRTQPLKPSLVVSASKDESVRLWNVQ 159 (369)
Q Consensus 82 ~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~ 159 (369)
+....+.+..+ |||++++++|..--.|++||+.+..+ .|..|. ..|.-.-.+. +-..++.-..|.+|.+-..
T Consensus 50 ~p~ast~ik~s--~DGqY~lAtG~YKP~ikvydlanLSL--KFERhlDae~V~feiLsD-D~SK~v~L~~DR~IefHak- 123 (703)
T KOG2321|consen 50 MPTASTRIKVS--PDGQYLLATGTYKPQIKVYDLANLSL--KFERHLDAEVVDFEILSD-DYSKSVFLQNDRTIEFHAK- 123 (703)
T ss_pred CccccceeEec--CCCcEEEEecccCCceEEEEccccee--eeeecccccceeEEEecc-chhhheEeecCceeeehhh-
Confidence 44455556655 99998889999999999999976544 333343 3344444444 5555555566777765432
Q ss_pred CCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccC
Q 017553 160 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH 239 (369)
Q Consensus 160 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (369)
-|.. ..+. -...-.+++++.-+.. |+.++....|+-+++..+ .-+..+...
T Consensus 124 ~G~h-y~~R----IP~~GRDm~y~~~scD-ly~~gsg~evYRlNLEqG-----------------------rfL~P~~~~ 174 (703)
T KOG2321|consen 124 YGRH-YRTR----IPKFGRDMKYHKPSCD-LYLVGSGSEVYRLNLEQG-----------------------RFLNPFETD 174 (703)
T ss_pred cCee-eeee----cCcCCccccccCCCcc-EEEeecCcceEEEEcccc-----------------------ccccccccc
Confidence 2221 1111 1222345666642444 444444567888888873 234444555
Q ss_pred CCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccC--CCCCeeEEEEeecCCccEEEEecCCCeE
Q 017553 240 SNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV--PECDIWFIKFSCDFHYNAAAIGNREGKI 315 (369)
Q Consensus 240 ~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~s~~~~~~~l~~~~~dg~i 315 (369)
...+.++..+ ..+|++|+.+|.|..||.++............+...+. ....|+++.|+.+| ..+++|+.+|.+
T Consensus 175 ~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~g--L~~aVGts~G~v 252 (703)
T KOG2321|consen 175 SGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDG--LHVAVGTSTGSV 252 (703)
T ss_pred cccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCc--eeEEeeccCCcE
Confidence 5778888877 67889999999999999998764332221111111111 12458999999987 689999999999
Q ss_pred EEEEccCCCceeEEEeecCCCccceEEEEecCC--CCEEEEeecCCeEEEEecC
Q 017553 316 FVWELQSSPPVLIARLSHAQSKSPIRQTAMSYD--GSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 316 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~s~~~dg~i~vw~~~ 367 (369)
.|||++..++..+... +..-+|..+.|.+. +..+++. ....++|||-.
T Consensus 253 ~iyDLRa~~pl~~kdh---~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~ 302 (703)
T KOG2321|consen 253 LIYDLRASKPLLVKDH---GYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDEC 302 (703)
T ss_pred EEEEcccCCceeeccc---CCccceeeecccccCCCceEEec-chHHhhhcccc
Confidence 9999999976555443 44578999999875 4556655 45679999854
No 230
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=3.5e-13 Score=116.57 Aligned_cols=211 Identities=12% Similarity=0.060 Sum_probs=136.2
Q ss_pred CeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeC---CCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecC
Q 017553 108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASK---DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHP 184 (369)
Q Consensus 108 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 184 (369)
..|.++|.. +...+.+..|...+...+|+| +++.|+..+. +..|.+||+.+++... +. .+.+.+...+|+|
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~---~~~g~~~~~~~SP 255 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSP-NRQEITYMSYANGRPRVYLLDLETGQREL-VG---NFPGMTFAPRFSP 255 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECC-CCCEEEEEEecCCCCEEEEEECCCCcEEE-ee---cCCCcccCcEECC
Confidence 378889874 555566777888999999999 7777776653 4689999998887643 33 3666778899999
Q ss_pred CCceEE-EEEeeCCc--EEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeec-
Q 017553 185 SDIYRI-ASCGMDNT--VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV- 258 (369)
Q Consensus 185 ~~~~~l-~~~~~d~~--v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~- 258 (369)
+++.| ++.+.++. |.+||+.++. ...+..+........|+ |+.++..+.
T Consensus 256 -DG~~la~~~~~~g~~~Iy~~d~~~~~------------------------~~~Lt~~~~~~~~~~~spDG~~i~f~s~~ 310 (435)
T PRK05137 256 -DGRKVVMSLSQGGNTDIYTMDLRSGT------------------------TTRLTDSPAIDTSPSYSPDGSQIVFESDR 310 (435)
T ss_pred -CCCEEEEEEecCCCceEEEEECCCCc------------------------eEEccCCCCccCceeEcCCCCEEEEEECC
Confidence 66544 56666665 6667776632 12233344444556665 677766553
Q ss_pred CC--eEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecC-C--CeEEEEEccCCCceeEEEeec
Q 017553 259 DN--EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR-E--GKIFVWELQSSPPVLIARLSH 333 (369)
Q Consensus 259 d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~-d--g~i~i~d~~~~~~~~~~~~~~ 333 (369)
++ .|+++|+..++ ...+......+....|+|+++ .|+.... . ..|.+||+..+.. ..+..
T Consensus 311 ~g~~~Iy~~d~~g~~----------~~~lt~~~~~~~~~~~SpdG~--~ia~~~~~~~~~~i~~~d~~~~~~---~~lt~ 375 (435)
T PRK05137 311 SGSPQLYVMNADGSN----------PRRISFGGGRYSTPVWSPRGD--LIAFTKQGGGQFSIGVMKPDGSGE---RILTS 375 (435)
T ss_pred CCCCeEEEEECCCCC----------eEEeecCCCcccCeEECCCCC--EEEEEEcCCCceEEEEEECCCCce---EeccC
Confidence 33 58888876553 222222234456678999997 5554332 2 4688889866532 22322
Q ss_pred CCCccceEEEEecCCCCEEEEeecC------CeEEEEecC
Q 017553 334 AQSKSPIRQTAMSYDGSTILSCCED------GAIWRWDAI 367 (369)
Q Consensus 334 ~~~~~~v~~~~~s~~~~~l~s~~~d------g~i~vw~~~ 367 (369)
+ ..+....|+|||++|+..+.+ ..++++++.
T Consensus 376 -~--~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~ 412 (435)
T PRK05137 376 -G--FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT 412 (435)
T ss_pred -C--CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence 1 246678999999988765543 257777764
No 231
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.63 E-value=2.5e-11 Score=101.58 Aligned_cols=276 Identities=16% Similarity=0.140 Sum_probs=164.7
Q ss_pred cEEEEEe-cCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeec----CCeEEEEEcCCc--c--ccceeecccc
Q 017553 59 RVTVYQC-LEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI----NGIIRVIDVSNE--K--LHKSFVGHGD 129 (369)
Q Consensus 59 ~v~iw~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~----dg~i~vwd~~~~--~--~~~~~~~~~~ 129 (369)
+|.+|++ .+...+..+.... ....-..++++ |+++ +|++..+ +|.|..|++... + .+.+......
T Consensus 14 gI~~~~~d~~~g~l~~~~~~~---~~~~Ps~l~~~--~~~~-~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~ 87 (345)
T PF10282_consen 14 GIYVFRFDEETGTLTLVQTVA---EGENPSWLAVS--PDGR-RLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGS 87 (345)
T ss_dssp EEEEEEEETTTTEEEEEEEEE---ESSSECCEEE---TTSS-EEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSS
T ss_pred cEEEEEEcCCCCCceEeeeec---CCCCCceEEEE--eCCC-EEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCC
Confidence 4999988 3334444444321 22233346666 8888 7777765 579999998764 2 2333333344
Q ss_pred ceEEEEecCCCCceEEEEe-CCCcEEEEEccC-CcEEEEeecc----------CCCCCcEEEEEecCCCceEEEEE-eeC
Q 017553 130 SINEIRTQPLKPSLVVSAS-KDESVRLWNVQT-GICILIFAGA----------GGHRNEVLSVDFHPSDIYRIASC-GMD 196 (369)
Q Consensus 130 ~v~~~~~~~~~~~~l~s~~-~dg~i~vwd~~~-~~~~~~~~~~----------~~~~~~v~~~~~~~~~~~~l~~~-~~d 196 (369)
....++++| ++.+|+++. .+|.|.++++.. +......... ........++.++| +++++++. -..
T Consensus 88 ~p~~i~~~~-~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~ 165 (345)
T PF10282_consen 88 SPCHIAVDP-DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGA 165 (345)
T ss_dssp CEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTT
T ss_pred CcEEEEEec-CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCC
Confidence 567899999 777777765 589999999987 3333221100 01234578999999 66655554 334
Q ss_pred CcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEE-EeecCCeEEEecCCCCCCC
Q 017553 197 NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFIL-SKSVDNEIVLWEPKMKEQS 273 (369)
Q Consensus 197 ~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~-~~~~d~~i~i~d~~~~~~~ 273 (369)
..|.+|++......+... ...........+.+.|+ +++++ +.-.++.|.++++.....
T Consensus 166 D~v~~~~~~~~~~~l~~~------------------~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g- 226 (345)
T PF10282_consen 166 DRVYVYDIDDDTGKLTPV------------------DSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDG- 226 (345)
T ss_dssp TEEEEEEE-TTS-TEEEE------------------EEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT-
T ss_pred CEEEEEEEeCCCceEEEe------------------eccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCC-
Confidence 589999998743211110 01111233446677776 55554 445588899998883221
Q ss_pred CCCCccceeeeccC------CCCCeeEEEEeecCCccEEEEecCCCeEEEEEcc--CCCceeEEEeecCCCccceEEEEe
Q 017553 274 PGEGTADILQKYPV------PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ--SSPPVLIARLSHAQSKSPIRQTAM 345 (369)
Q Consensus 274 ~~~~~~~~~~~~~~------~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~v~~~~~ 345 (369)
....+..... .......++++|+++. +.++....+.|.+|++. +++...+..+.. .......+++
T Consensus 227 ----~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~-lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~--~G~~Pr~~~~ 299 (345)
T PF10282_consen 227 ----SLTEIQTISTLPEGFTGENAPAEIAISPDGRF-LYVSNRGSNSISVFDLDPATGTLTLVQTVPT--GGKFPRHFAF 299 (345)
T ss_dssp ----EEEEEEEEESCETTSCSSSSEEEEEE-TTSSE-EEEEECTTTEEEEEEECTTTTTEEEEEEEEE--SSSSEEEEEE
T ss_pred ----ceeEEEEeeeccccccccCCceeEEEecCCCE-EEEEeccCCEEEEEEEecCCCceEEEEEEeC--CCCCccEEEE
Confidence 1112221111 1125678999999982 44455567899999994 355555555542 2245789999
Q ss_pred cCCCCEEEEee-cCCeEEEEecCC
Q 017553 346 SYDGSTILSCC-EDGAIWRWDAIP 368 (369)
Q Consensus 346 s~~~~~l~s~~-~dg~i~vw~~~~ 368 (369)
+|+|++|+++. .++.|.+|++..
T Consensus 300 s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 300 SPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp -TTSSEEEEEETTTTEEEEEEEET
T ss_pred eCCCCEEEEEecCCCeEEEEEEeC
Confidence 99999998887 666899998753
No 232
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=4.9e-13 Score=114.99 Aligned_cols=231 Identities=11% Similarity=0.046 Sum_probs=137.8
Q ss_pred EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEee---cCCeEEEEEcCCccccceeeccccceEEEEe
Q 017553 60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG---INGIIRVIDVSNEKLHKSFVGHGDSINEIRT 136 (369)
Q Consensus 60 v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 136 (369)
|.++|...... ..+. .+...+...+|+ |||+ .|+..+ .+..|++|++.+++... +....+.+....|
T Consensus 181 l~~~d~dg~~~-~~lt-----~~~~~~~~p~wS--PDG~-~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~ 250 (429)
T PRK03629 181 LRVSDYDGYNQ-FVVH-----RSPQPLMSPAWS--PDGS-KLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAF 250 (429)
T ss_pred EEEEcCCCCCC-EEee-----cCCCceeeeEEc--CCCC-EEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEE
Confidence 88888654433 3332 234567778888 9998 565433 24579999998775322 2222233456899
Q ss_pred cCCCCceEEE-EeCCC--cEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEee-CCcEEEE--EccCceee
Q 017553 137 QPLKPSLVVS-ASKDE--SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM-DNTVKIW--SMKEFWTY 210 (369)
Q Consensus 137 ~~~~~~~l~s-~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~~v~i~--d~~~~~~~ 210 (369)
+| +++.|+. .+.+| .|++||+.+++...... +...+....|+| +++.|+..+. ++...+| |+.++.
T Consensus 251 SP-DG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~----~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~-- 322 (429)
T PRK03629 251 SP-DGSKLAFALSKTGSLNLYVMDLASGQIRQVTD----GRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGA-- 322 (429)
T ss_pred CC-CCCEEEEEEcCCCCcEEEEEECCCCCEEEccC----CCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCCC--
Confidence 99 7776664 45455 58899998877654433 445678899999 7776665554 4455555 544421
Q ss_pred eeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecC---CeEEEecCCCCCCCCCCCccceeeec
Q 017553 211 VEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVD---NEIVLWEPKMKEQSPGEGTADILQKY 285 (369)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~ 285 (369)
...+...........|+ |++++..+.+ ..|.+||+.+++. ..+
T Consensus 323 ----------------------~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~----------~~L 370 (429)
T PRK03629 323 ----------------------PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV----------QVL 370 (429)
T ss_pred ----------------------eEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe----------EEe
Confidence 11111222233345554 7777665543 3588899877642 111
Q ss_pred cCCCCCeeEEEEeecCCccEEEEecCCCe---EEEEEccCCCceeEEEeecCCCccceEEEEecCC
Q 017553 286 PVPECDIWFIKFSCDFHYNAAAIGNREGK---IFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYD 348 (369)
Q Consensus 286 ~~~~~~i~~~~~s~~~~~~~l~~~~~dg~---i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 348 (369)
... .......|+||++ .|+.++.++. +.++++.... ...+. .|.+.+...+|+|-
T Consensus 371 t~~-~~~~~p~~SpDG~--~i~~~s~~~~~~~l~~~~~~G~~---~~~l~--~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 371 TDT-FLDETPSIAPNGT--MVIYSSSQGMGSVLNLVSTDGRF---KARLP--ATDGQVKFPAWSPY 428 (429)
T ss_pred CCC-CCCCCceECCCCC--EEEEEEcCCCceEEEEEECCCCC---eEECc--cCCCCcCCcccCCC
Confidence 111 1234578999997 6666665543 6777775542 33444 55577888899873
No 233
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=5e-13 Score=115.47 Aligned_cols=211 Identities=16% Similarity=0.107 Sum_probs=132.7
Q ss_pred CeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCC---CcEEEEEccCCcEEEEeeccCCCCCcEEEEEecC
Q 017553 108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD---ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHP 184 (369)
Q Consensus 108 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 184 (369)
..|.+||.. +...+.+..+...+.+.+|+| +++.|+..+.+ ..|++||+.+++.... . ...+...+..|+|
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSp-Dg~~la~~s~~~~~~~l~~~dl~~g~~~~l-~---~~~g~~~~~~~Sp 257 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSAEPILSPAWSP-DGKKLAYVSFERGRSAIYVQDLATGQRELV-A---SFRGINGAPSFSP 257 (433)
T ss_pred EEEEEECCC-CCCceEeecCCCccccccCCC-CCCEEEEEecCCCCcEEEEEECCCCCEEEe-c---cCCCCccCceECC
Confidence 468899975 444556666778899999999 78888776643 4699999988775443 2 2444556789999
Q ss_pred CCceEE-EEEeeCC--cEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEee-c
Q 017553 185 SDIYRI-ASCGMDN--TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS-V 258 (369)
Q Consensus 185 ~~~~~l-~~~~~d~--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~-~ 258 (369)
+++.+ ++.+.++ .|++||+.++. ...+..+........|+ |+.++..+ .
T Consensus 258 -DG~~l~~~~s~~g~~~Iy~~d~~~g~------------------------~~~lt~~~~~~~~~~~spDG~~l~f~sd~ 312 (433)
T PRK04922 258 -DGRRLALTLSRDGNPEIYVMDLGSRQ------------------------LTRLTNHFGIDTEPTWAPDGKSIYFTSDR 312 (433)
T ss_pred -CCCEEEEEEeCCCCceEEEEECCCCC------------------------eEECccCCCCccceEECCCCCEEEEEECC
Confidence 66544 5556665 58889987732 12222333334456675 67776655 3
Q ss_pred CCe--EEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEec-CC--CeEEEEEccCCCceeEEEeec
Q 017553 259 DNE--IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN-RE--GKIFVWELQSSPPVLIARLSH 333 (369)
Q Consensus 259 d~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~-~d--g~i~i~d~~~~~~~~~~~~~~ 333 (369)
++. |+++|+.+++. ..+..........+|+|+++ .++..+ .+ ..|.+||+.+++.. .+..
T Consensus 313 ~g~~~iy~~dl~~g~~----------~~lt~~g~~~~~~~~SpDG~--~Ia~~~~~~~~~~I~v~d~~~g~~~---~Lt~ 377 (433)
T PRK04922 313 GGRPQIYRVAASGGSA----------ERLTFQGNYNARASVSPDGK--KIAMVHGSGGQYRIAVMDLSTGSVR---TLTP 377 (433)
T ss_pred CCCceEEEEECCCCCe----------EEeecCCCCccCEEECCCCC--EEEEEECCCCceeEEEEECCCCCeE---ECCC
Confidence 444 66667655431 11112223344689999997 555433 22 26999999887533 3332
Q ss_pred CCCccceEEEEecCCCCEEEEeecC---CeEEEEecC
Q 017553 334 AQSKSPIRQTAMSYDGSTILSCCED---GAIWRWDAI 367 (369)
Q Consensus 334 ~~~~~~v~~~~~s~~~~~l~s~~~d---g~i~vw~~~ 367 (369)
. .......|+|||++|+..+.+ +.|+++++.
T Consensus 378 ~---~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 378 G---SLDESPSFAPNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred C---CCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 1 234467899999988776653 347777664
No 234
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.61 E-value=1.7e-13 Score=103.95 Aligned_cols=150 Identities=22% Similarity=0.328 Sum_probs=106.7
Q ss_pred EEEEEeeccCCCccEEEEecC-C----------cEEEEEec-CCceeEEEeeeccCCcccceeEEEeeecCCCccEEE-E
Q 017553 37 YAVVFNFIDSRYFNVFATVGG-N----------RVTVYQCL-EGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLV-A 103 (369)
Q Consensus 37 ~~~~~s~~~~~~~~~la~~~~-~----------~v~iw~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~-~ 103 (369)
..+.|+| .|+.|+.-.. + ...+|.+. .+.....+.. ...++|.+++|+ |+|..+++ .
T Consensus 9 ~~~~W~~----~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l----~~~~~I~~~~Ws--P~g~~favi~ 78 (194)
T PF08662_consen 9 AKLHWQP----SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIEL----KKEGPIHDVAWS--PNGNEFAVIY 78 (194)
T ss_pred EEEEecc----cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeec----cCCCceEEEEEC--cCCCEEEEEE
Confidence 3567888 5666554332 1 14555553 3333444432 244579999999 88884433 3
Q ss_pred eecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCC---CcEEEEEccCCcEEEEeeccCCCCCcEEEE
Q 017553 104 GGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD---ESVRLWNVQTGICILIFAGAGGHRNEVLSV 180 (369)
Q Consensus 104 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~ 180 (369)
|..++.|.+||++ ++.+..+. ...++.+.|+| ++++|++++.+ |.|.+||.++.+.+.... |. .+..+
T Consensus 79 g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~----~~-~~t~~ 149 (194)
T PF08662_consen 79 GSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE----HS-DATDV 149 (194)
T ss_pred ccCCcccEEEcCc-ccEeEeec--CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCCCEEeeccc----cC-cEEEE
Confidence 5567899999986 66666664 46788999999 88999988753 679999999888887765 44 47899
Q ss_pred EecCCCceEEEEEee------CCcEEEEEccC
Q 017553 181 DFHPSDIYRIASCGM------DNTVKIWSMKE 206 (369)
Q Consensus 181 ~~~~~~~~~l~~~~~------d~~v~i~d~~~ 206 (369)
+|+| ++++|+++.. |..++||+...
T Consensus 150 ~WsP-dGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 150 EWSP-DGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred EEcC-CCCEEEEEEeccceeccccEEEEEecC
Confidence 9999 8888988864 78899999865
No 235
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.61 E-value=8.6e-13 Score=109.51 Aligned_cols=190 Identities=17% Similarity=0.275 Sum_probs=154.3
Q ss_pred CccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCC-----------------CccEEEEeecCCe
Q 017553 48 YFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD-----------------GIPFLVAGGINGI 109 (369)
Q Consensus 48 ~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----------------g~~~l~~~~~dg~ 109 (369)
.+.++|....|+ ++||+..+++....+.... ...+...+..|....+ ++..++-|...|.
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~--~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIA--SLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccch--hccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 478999998888 9999998888766665432 2345556666654322 2337888999999
Q ss_pred EEEEEcCCccccceee--ccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCc
Q 017553 110 IRVIDVSNEKLHKSFV--GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDI 187 (369)
Q Consensus 110 i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 187 (369)
|.+|++..++....+. .|.+.|.++.++. +-..|.+++.|+.+..|+...++.++.+. .....+.+++.+| ++
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~~~~~---~~~~~~~sl~is~-D~ 156 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVIIRIWK---EQKPLVSSLCISP-DG 156 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceeeeeec---cCCCccceEEEcC-CC
Confidence 9999999999888776 5999999999998 88899999999999999999999999888 6888899999999 78
Q ss_pred eEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee-------CcEEEEee-cC
Q 017553 188 YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-------GDFILSKS-VD 259 (369)
Q Consensus 188 ~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-------~~~l~~~~-~d 259 (369)
..+++++ ++|++||+.+ ...+..+.+|.++|.++.|- |.+++++. .+
T Consensus 157 ~~l~~as--~~ik~~~~~~-----------------------kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~ 211 (541)
T KOG4547|consen 157 KILLTAS--RQIKVLDIET-----------------------KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAE 211 (541)
T ss_pred CEEEecc--ceEEEEEccC-----------------------ceEEEEecCCCcceEEEEEEEeccccccceeeeccccc
Confidence 8898887 6899999999 55688999999999999994 56666543 45
Q ss_pred CeEEEecCCC
Q 017553 260 NEIVLWEPKM 269 (369)
Q Consensus 260 ~~i~i~d~~~ 269 (369)
..+.+|-...
T Consensus 212 r~i~~w~v~~ 221 (541)
T KOG4547|consen 212 RGITVWVVEK 221 (541)
T ss_pred cceeEEEEEc
Confidence 5577776655
No 236
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=5.3e-13 Score=114.78 Aligned_cols=217 Identities=12% Similarity=0.091 Sum_probs=131.9
Q ss_pred cccCCcCeEEEEEeeccCCCccEEEEecC---Cc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEe
Q 017553 29 LQEGKRPLYAVVFNFIDSRYFNVFATVGG---NR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG 104 (369)
Q Consensus 29 ~~~h~~~v~~~~~s~~~~~~~~~la~~~~---~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~ 104 (369)
+..+...+.+.+||| +|+.||..+. +. +.+|++.+++... +.. ..+.+....|+ |||+.++++.
T Consensus 194 lt~~~~~~~~p~wSP----DG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~-----~~~~~~~~~~S--PDG~~La~~~ 261 (429)
T PRK03629 194 VHRSPQPLMSPAWSP----DGSKLAYVTFESGRSALVIQTLANGAVRQ-VAS-----FPRHNGAPAFS--PDGSKLAFAL 261 (429)
T ss_pred eecCCCceeeeEEcC----CCCEEEEEEecCCCcEEEEEECCCCCeEE-ccC-----CCCCcCCeEEC--CCCCEEEEEE
Confidence 344567899999999 6888886542 22 9999987765432 221 12223346676 9999444444
Q ss_pred ecCC--eEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeC-CCc--EEEEEccCCcEEEEeeccCCCCCcEEE
Q 017553 105 GING--IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASK-DES--VRLWNVQTGICILIFAGAGGHRNEVLS 179 (369)
Q Consensus 105 ~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-dg~--i~vwd~~~~~~~~~~~~~~~~~~~v~~ 179 (369)
+.+| .|++||+.+++..+ +..+...+....|+| +++.|+..+. ++. |.++|+.+++.. .+. .+......
T Consensus 262 ~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt---~~~~~~~~ 335 (429)
T PRK03629 262 SKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGAPQ-RIT---WEGSQNQD 335 (429)
T ss_pred cCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCCCeE-Eee---cCCCCccC
Confidence 5455 58899998776543 333445678899999 7777766554 444 444466665543 333 23445567
Q ss_pred EEecCCCceEEEEEeeC---CcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeee--eCcEEE
Q 017553 180 VDFHPSDIYRIASCGMD---NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW--LGDFIL 254 (369)
Q Consensus 180 ~~~~~~~~~~l~~~~~d---~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~ 254 (369)
..|+| +++.++..+.+ ..|.+||+.++... .+.. ........| +|+.++
T Consensus 336 ~~~Sp-DG~~Ia~~~~~~g~~~I~~~dl~~g~~~------------------------~Lt~-~~~~~~p~~SpDG~~i~ 389 (429)
T PRK03629 336 ADVSS-DGKFMVMVSSNGGQQHIAKQDLATGGVQ------------------------VLTD-TFLDETPSIAPNGTMVI 389 (429)
T ss_pred EEECC-CCCEEEEEEccCCCceEEEEECCCCCeE------------------------EeCC-CCCCCCceECCCCCEEE
Confidence 89999 77777665443 35788888774211 1110 011123344 378888
Q ss_pred EeecCCe---EEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEee
Q 017553 255 SKSVDNE---IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSC 299 (369)
Q Consensus 255 ~~~~d~~---i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 299 (369)
..+.++. +.++++... ....+..+...+...+|+|
T Consensus 390 ~~s~~~~~~~l~~~~~~G~----------~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 390 YSSSQGMGSVLNLVSTDGR----------FKARLPATDGQVKFPAWSP 427 (429)
T ss_pred EEEcCCCceEEEEEECCCC----------CeEECccCCCCcCCcccCC
Confidence 8887764 677777543 2344555556677777876
No 237
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=1e-12 Score=113.54 Aligned_cols=230 Identities=13% Similarity=0.057 Sum_probs=137.2
Q ss_pred EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeec---CCeEEEEEcCCccccceeeccccceEEEEe
Q 017553 60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI---NGIIRVIDVSNEKLHKSFVGHGDSINEIRT 136 (369)
Q Consensus 60 v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 136 (369)
|.+||.. +.....+. .+...+...+|+ |||+ .|+..+. +..|++||+.+++.. .+....+...+.+|
T Consensus 186 l~i~D~~-g~~~~~lt-----~~~~~v~~p~wS--pDg~-~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~ 255 (433)
T PRK04922 186 LQVADSD-GYNPQTIL-----RSAEPILSPAWS--PDGK-KLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSF 255 (433)
T ss_pred EEEECCC-CCCceEee-----cCCCccccccCC--CCCC-EEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceE
Confidence 8888864 43333333 245567778887 9998 6666553 346999999877643 23334445567899
Q ss_pred cCCCCceE-EEEeCCC--cEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEe-eCCc--EEEEEccCceee
Q 017553 137 QPLKPSLV-VSASKDE--SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG-MDNT--VKIWSMKEFWTY 210 (369)
Q Consensus 137 ~~~~~~~l-~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~--v~i~d~~~~~~~ 210 (369)
+| +++.| ++.+.+| .|++||+.+++... +. .+.......+|+| +++.|+..+ .+|. |+++|+.+++.
T Consensus 256 Sp-DG~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt---~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~~- 328 (433)
T PRK04922 256 SP-DGRRLALTLSRDGNPEIYVMDLGSRQLTR-LT---NHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGSA- 328 (433)
T ss_pred CC-CCCEEEEEEeCCCCceEEEEECCCCCeEE-Cc---cCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCe-
Confidence 99 66654 5556665 59999998877543 33 3555566789999 777666555 4454 55556554211
Q ss_pred eeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCC---eEEEecCCCCCCCCCCCccceeeec
Q 017553 211 VEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDN---EIVLWEPKMKEQSPGEGTADILQKY 285 (369)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~ 285 (369)
..+..+........|+ |++++..+.++ .|.+||+.+++. ..+
T Consensus 329 -----------------------~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~----------~~L 375 (433)
T PRK04922 329 -----------------------ERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV----------RTL 375 (433)
T ss_pred -----------------------EEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCe----------EEC
Confidence 1111122223345565 77777655433 599999877642 111
Q ss_pred cCCCCCeeEEEEeecCCccEEEEecC---CCeEEEEEccCCCceeEEEeecCCCccceEEEEecC
Q 017553 286 PVPECDIWFIKFSCDFHYNAAAIGNR---EGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSY 347 (369)
Q Consensus 286 ~~~~~~i~~~~~s~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 347 (369)
.. ........|+|+++ +++..+. .+.|.++++.... ...+. .+.+.+...+|+|
T Consensus 376 t~-~~~~~~p~~spdG~--~i~~~s~~~g~~~L~~~~~~g~~---~~~l~--~~~g~~~~p~wsp 432 (433)
T PRK04922 376 TP-GSLDESPSFAPNGS--MVLYATREGGRGVLAAVSTDGRV---RQRLV--SADGEVREPAWSP 432 (433)
T ss_pred CC-CCCCCCceECCCCC--EEEEEEecCCceEEEEEECCCCc---eEEcc--cCCCCCCCCccCC
Confidence 11 11234568999997 4444332 3457888886542 33333 2335667778876
No 238
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=1.2e-12 Score=112.63 Aligned_cols=205 Identities=15% Similarity=0.112 Sum_probs=126.7
Q ss_pred CeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCC---CcEEEEEccCCcEEEEeeccCCCCCcEEEEEecC
Q 017553 108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD---ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHP 184 (369)
Q Consensus 108 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 184 (369)
..|.++|. ++...+.+..+...+.+.+|+| +++.|+..+.+ ..|.+||+.+++.... . ...+.+...+|+|
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~~~l-~---~~~g~~~~~~~SP 249 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPIISPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRRRVV-A---NFKGSNSAPAWSP 249 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCcccceEcC-CCCEEEEEEccCCCcEEEEEECCCCCEEEe-e---cCCCCccceEECC
Confidence 45777775 4555555666778899999999 77877766543 3599999998876543 2 2445567899999
Q ss_pred CCceEE-EEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeec-CC
Q 017553 185 SDIYRI-ASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV-DN 260 (369)
Q Consensus 185 ~~~~~l-~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~-d~ 260 (369)
+++.| ++.+.++...+|.++... .....+..+........|+ |+.++..+. ++
T Consensus 250 -DG~~la~~~~~~g~~~Iy~~d~~~----------------------~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g 306 (427)
T PRK02889 250 -DGRTLAVALSRDGNSQIYTVNADG----------------------SGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGG 306 (427)
T ss_pred -CCCEEEEEEccCCCceEEEEECCC----------------------CCcEECCCCCCCCcCeEEcCCCCEEEEEecCCC
Confidence 66555 467778887777654310 0112223333334455675 777665543 45
Q ss_pred eEEEecCC--CCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCC---eEEEEEccCCCceeEEEeecCC
Q 017553 261 EIVLWEPK--MKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG---KIFVWELQSSPPVLIARLSHAQ 335 (369)
Q Consensus 261 ~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~ 335 (369)
...+|.+. ++. ...+..........+|+|+++ +++..+.++ .|.+||+.+++.. .+.. .
T Consensus 307 ~~~Iy~~~~~~g~----------~~~lt~~g~~~~~~~~SpDG~--~Ia~~s~~~g~~~I~v~d~~~g~~~---~lt~-~ 370 (427)
T PRK02889 307 APQIYRMPASGGA----------AQRVTFTGSYNTSPRISPDGK--LLAYISRVGGAFKLYVQDLATGQVT---ALTD-T 370 (427)
T ss_pred CcEEEEEECCCCc----------eEEEecCCCCcCceEECCCCC--EEEEEEccCCcEEEEEEECCCCCeE---EccC-C
Confidence 66666543 322 111111122334578999997 565544433 6999999887533 2221 1
Q ss_pred CccceEEEEecCCCCEEEEeecCC
Q 017553 336 SKSPIRQTAMSYDGSTILSCCEDG 359 (369)
Q Consensus 336 ~~~~v~~~~~s~~~~~l~s~~~dg 359 (369)
.......|+|||+.|+.++.++
T Consensus 371 --~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 371 --TRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred --CCccCceECCCCCEEEEEEecC
Confidence 2235689999999888777544
No 239
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=8.8e-12 Score=103.00 Aligned_cols=294 Identities=16% Similarity=0.180 Sum_probs=183.8
Q ss_pred CcCeEEEEEeeccCCCccEEEEecCCcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEe--------
Q 017553 33 KRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG-------- 104 (369)
Q Consensus 33 ~~~v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~-------- 104 (369)
..+++..++|+ +|+++|.+.++.+.|++...+..+.... .. .++++.|+ |-|. +|.+=
T Consensus 34 ~~~~~v~~~S~----~G~lfA~~~~~~v~i~~~~~~~~~lt~~------~~-~~~~L~fS--P~g~-yL~T~e~~~i~~~ 99 (566)
T KOG2315|consen 34 SRPCNVFAYSN----NGRLFAYSDNQVVKVFEIATLKVVLCVE------LK-KTYDLLFS--PKGN-YLLTWEPWAIYGP 99 (566)
T ss_pred CCcceeEEEcC----CCcEEEEEcCCeEEEEEccCCcEEEEec------cc-eeeeeeec--cccc-ccccccccccccC
Confidence 34477788888 6999999988889999988776332222 12 56667776 8887 66652
Q ss_pred --ecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEe
Q 017553 105 --GINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDF 182 (369)
Q Consensus 105 --~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~ 182 (369)
...-.+++|+++++.....+......-++..|++ +..+ ++=-..+.+.+|++.+.+.+..- -|...|..+.+
T Consensus 100 ~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~-dEsl-~arlv~nev~f~~~~~f~~~~~k----l~~~~i~~f~l 173 (566)
T KOG2315|consen 100 KNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSI-DESL-AARLVSNEVQFYDLGSFKTIQHK----LSVSGITMLSL 173 (566)
T ss_pred CCCCCCceeeeeeccceehhheehhhhcCccccccc-chhh-hhhhhcceEEEEecCCccceeee----eeccceeeEEe
Confidence 1134588999999766655554333336899998 5443 33233468999999875444333 27788999999
Q ss_pred cCCC-c-eEEEE-----EeeCCcEEEEEccCceee-----------eeeeeeccCCCC---------------CCCCce-
Q 017553 183 HPSD-I-YRIAS-----CGMDNTVKIWSMKEFWTY-----------VEKSFTWTDLPS---------------KFPTKY- 228 (369)
Q Consensus 183 ~~~~-~-~~l~~-----~~~d~~v~i~d~~~~~~~-----------~~~~~~~~~~~~---------------~~~~~~- 228 (369)
+| + . ..+++ .|.-+.|++|........ -...+.|..... .+-.+.
T Consensus 174 Sp-gp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~ 252 (566)
T KOG2315|consen 174 SP-GPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQT 252 (566)
T ss_pred cC-CCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccce
Confidence 98 5 2 33332 244457888887621100 000111211100 000000
Q ss_pred e------ecceeeeccCCCceeeeeee--CcEE--EEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEe
Q 017553 229 V------QFPVFIASVHSNYVDCNRWL--GDFI--LSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFS 298 (369)
Q Consensus 229 ~------~~~~~~~~~~~~~v~~~~~~--~~~l--~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 298 (369)
. +.....-....++|.++.|+ +..+ +.|-+=..+.|||++.. ++.. ..+++-+++-|+
T Consensus 253 Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~----------~v~d--f~egpRN~~~fn 320 (566)
T KOG2315|consen 253 LYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK----------PVFD--FPEGPRNTAFFN 320 (566)
T ss_pred EEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC----------EeEe--CCCCCccceEEC
Confidence 0 01111122236899999998 4433 44556778999999854 3333 345667789999
Q ss_pred ecCCccEEEEe---cCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeec------CCeEEEEecC
Q 017553 299 CDFHYNAAAIG---NREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCE------DGAIWRWDAI 367 (369)
Q Consensus 299 ~~~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~------dg~i~vw~~~ 367 (369)
|.|+ +++.+ .--|.|.|||+.+. +.+..+.. ..-+-+.|+|||++++|+.. |+.++||+..
T Consensus 321 p~g~--ii~lAGFGNL~G~mEvwDv~n~--K~i~~~~a----~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 321 PHGN--IILLAGFGNLPGDMEVWDVPNR--KLIAKFKA----ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred CCCC--EEEEeecCCCCCceEEEeccch--hhcccccc----CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 9997 44433 34689999999996 45555542 23456899999999998874 6779999864
No 240
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.58 E-value=3.2e-13 Score=119.05 Aligned_cols=261 Identities=15% Similarity=0.124 Sum_probs=182.9
Q ss_pred cEEEEecCCcEEEEEecCCceeEEEeeecc-CCc--ccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeec
Q 017553 50 NVFATVGGNRVTVYQCLEGGVIAALQSYVD-EDK--EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG 126 (369)
Q Consensus 50 ~~la~~~~~~v~iw~~~~~~~~~~~~~~~~-~~~--~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 126 (369)
++|..+..-.+.+||+..+..+..+..+.. +.| ++.+. -.+. +++++..-+.+..=+... +....+
T Consensus 18 ~~llag~gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~-------l~~~-~~v~~~~~~~v~~~~~~~-~~~~~~-- 86 (967)
T KOG0974|consen 18 DYLLAGSGPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVK-------LLSG-KIVTCAKSDEVYVKEASN-QIIERF-- 86 (967)
T ss_pred ceeeecCCCceEEeeCCchhHhhhhhhhcccccccccccce-------eccc-eEEEEEeecceeecchhh-hhhhhc--
Confidence 577777766799999988877665543221 122 00000 1122 455555544444433221 112222
Q ss_pred cccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEE-----EEEecCCCceEEEEEeeCCcEEE
Q 017553 127 HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVL-----SVDFHPSDIYRIASCGMDNTVKI 201 (369)
Q Consensus 127 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~-----~~~~~~~~~~~l~~~~~d~~v~i 201 (369)
.+.|..-.+.. +...++.+..+..+.+||...+.....+. +..... -+-+++ +.-++++|+.-+.|.+
T Consensus 87 -s~wi~g~~l~~-e~k~i~l~~~~ns~~i~d~~~~~~~~~i~----~~er~~l~~~~~~g~s~-~~~~i~~gsv~~~iiv 159 (967)
T KOG0974|consen 87 -SDWIFGAKLFE-ENKKIALVTSRNSLLIRDSKNSSVLSKIQ----SDERCTLYSSLIIGDSA-EELYIASGSVFGEIIV 159 (967)
T ss_pred -cccccccchhh-hcceEEEEEcCceEEEEecccCceehhcC----CCceEEEEeEEEEeccC-cEEEEEeccccccEEE
Confidence 23344444554 66788888888999999998887777665 433321 223455 7788999999999999
Q ss_pred EEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCcc
Q 017553 202 WSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTA 279 (369)
Q Consensus 202 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 279 (369)
|+.... .....+.+|.+.+.++.++ |.++++.+.|..+|+|++.+.+..
T Consensus 160 W~~~~d-----------------------n~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~------ 210 (967)
T KOG0974|consen 160 WKPHED-----------------------NKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVL------ 210 (967)
T ss_pred Eecccc-----------------------CCcceecccCCceEEEEEccCCcEEEEEecCcceeeeeccccccc------
Confidence 998741 1122678999999999995 999999999999999999998742
Q ss_pred ceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCC-ccceEEEEecCCCCEEEEeecC
Q 017553 280 DILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQS-KSPIRQTAMSYDGSTILSCCED 358 (369)
Q Consensus 280 ~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~d 358 (369)
....-.|...++.+.|.|+ .+++++.|-+.++|+.+.... ..+. +| ...|..++..++...++|++.|
T Consensus 211 --~~~~fgHsaRvw~~~~~~n----~i~t~gedctcrvW~~~~~~l---~~y~--~h~g~~iw~~~~~~~~~~~vT~g~D 279 (967)
T KOG0974|consen 211 --GCTGFGHSARVWACCFLPN----RIITVGEDCTCRVWGVNGTQL---EVYD--EHSGKGIWKIAVPIGVIIKVTGGND 279 (967)
T ss_pred --CcccccccceeEEEEeccc----eeEEeccceEEEEEeccccee---hhhh--hhhhcceeEEEEcCCceEEEeeccC
Confidence 2345568899999999998 699999999999997766532 2333 33 2579999999999999999999
Q ss_pred CeEEEEecCC
Q 017553 359 GAIWRWDAIP 368 (369)
Q Consensus 359 g~i~vw~~~~ 368 (369)
|.+++|++..
T Consensus 280 s~lk~~~l~~ 289 (967)
T KOG0974|consen 280 STLKLWDLNG 289 (967)
T ss_pred cchhhhhhhc
Confidence 9999999753
No 241
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.58 E-value=3e-12 Score=106.95 Aligned_cols=276 Identities=13% Similarity=0.064 Sum_probs=156.1
Q ss_pred ccEEEEec-CCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeec
Q 017553 49 FNVFATVG-GNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG 126 (369)
Q Consensus 49 ~~~la~~~-~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 126 (369)
+++++... +++ |.|.|..+.+.+..+... ..+ .....++|||+ ++++.+.||.|.++|+.+.+.+.+++.
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~------~~~-h~~~~~s~Dgr-~~yv~~rdg~vsviD~~~~~~v~~i~~ 76 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTG------GAP-HAGLKFSPDGR-YLYVANRDGTVSVIDLATGKVVATIKV 76 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-S------TTE-EEEEE-TT-SS-EEEEEETTSEEEEEETTSSSEEEEEE-
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCC------CCc-eeEEEecCCCC-EEEEEcCCCeEEEEECCcccEEEEEec
Confidence 45665443 333 999999999988888742 122 12233459999 888888999999999999999999985
Q ss_pred cccceEEEEecCCCCceEEEE-eCCCcEEEEEccCCcEEEEeeccC----CCCCcEEEEEecCCCce-EEEEEeeCCcEE
Q 017553 127 HGDSINEIRTQPLKPSLVVSA-SKDESVRLWNVQTGICILIFAGAG----GHRNEVLSVDFHPSDIY-RIASCGMDNTVK 200 (369)
Q Consensus 127 ~~~~v~~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~-~l~~~~~d~~v~ 200 (369)
. .....+++++ ++++++++ ..++.+.++|.++.+.++.+.... .....+..+..+| ... ++++.-..+.|.
T Consensus 77 G-~~~~~i~~s~-DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~-~~~~fVv~lkd~~~I~ 153 (369)
T PF02239_consen 77 G-GNPRGIAVSP-DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASP-GRPEFVVNLKDTGEIW 153 (369)
T ss_dssp S-SEEEEEEE---TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-S-SSSEEEEEETTTTEEE
T ss_pred C-CCcceEEEcC-CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecC-CCCEEEEEEccCCeEE
Confidence 4 4467899999 77777765 468999999999999998876321 1234677888888 555 444444457888
Q ss_pred EEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEE-eecCCeEEEecCCCCCCCCCCC
Q 017553 201 IWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILS-KSVDNEIVLWEPKMKEQSPGEG 277 (369)
Q Consensus 201 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~-~~~d~~i~i~d~~~~~~~~~~~ 277 (369)
+.|....... ...............|+ ++++++ ...++.|.++|..+.+...
T Consensus 154 vVdy~d~~~~----------------------~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~--- 208 (369)
T PF02239_consen 154 VVDYSDPKNL----------------------KVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVA--- 208 (369)
T ss_dssp EEETTTSSCE----------------------EEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEE---
T ss_pred EEEecccccc----------------------ceeeecccccccccccCcccceeeecccccceeEEEeeccceEEE---
Confidence 8887663111 11111123344455665 566555 4557789999988775311
Q ss_pred ccceeee-ccCCCCCee-------EEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCC
Q 017553 278 TADILQK-YPVPECDIW-------FIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDG 349 (369)
Q Consensus 278 ~~~~~~~-~~~~~~~i~-------~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 349 (369)
.+.. ...|..+.. ...|...+.....++.-....+.+||..+. +.+.++.. ..++ .-+..+|++
T Consensus 209 ---~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~w--kvv~~I~~--~G~g-lFi~thP~s 280 (369)
T PF02239_consen 209 ---LIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAW--KVVKTIPT--QGGG-LFIKTHPDS 280 (369)
T ss_dssp ---EEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBT--SEEEEEE---SSSS---EE--TT-
T ss_pred ---EeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcC--eEEEEEEC--CCCc-ceeecCCCC
Confidence 0000 001111111 122333322122222222234567777776 45666662 2344 678889999
Q ss_pred CEEEEe----ecCCeEEEEecCC
Q 017553 350 STILSC----CEDGAIWRWDAIP 368 (369)
Q Consensus 350 ~~l~s~----~~dg~i~vw~~~~ 368 (369)
+++.+. ...+.|.|+|.++
T Consensus 281 ~~vwvd~~~~~~~~~v~viD~~t 303 (369)
T PF02239_consen 281 RYVWVDTFLNPDADTVQVIDKKT 303 (369)
T ss_dssp SEEEEE-TT-SSHT-EEEEECCG
T ss_pred ccEEeeccCCCCCceEEEEECcC
Confidence 999988 4557899999865
No 242
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=3e-12 Score=110.81 Aligned_cols=230 Identities=11% Similarity=0.055 Sum_probs=140.5
Q ss_pred EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeec---CCeEEEEEcCCccccceeeccccceEEEEe
Q 017553 60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI---NGIIRVIDVSNEKLHKSFVGHGDSINEIRT 136 (369)
Q Consensus 60 v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 136 (369)
|.++|.. +.....+. .+...+...+|+ |||+ .|+..+. +..|++||+.+++. ..+..+.+.+...+|
T Consensus 184 l~~~d~d-g~~~~~lt-----~~~~~v~~p~wS--pDG~-~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~ 253 (435)
T PRK05137 184 LAIMDQD-GANVRYLT-----DGSSLVLTPRFS--PNRQ-EITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRF 253 (435)
T ss_pred EEEECCC-CCCcEEEe-----cCCCCeEeeEEC--CCCC-EEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEE
Confidence 8888864 44444443 355678888888 9998 6665542 46899999987764 344456667788999
Q ss_pred cCCCCceE-EEEeCCCc--EEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEe-eCC--cEEEEEccCceee
Q 017553 137 QPLKPSLV-VSASKDES--VRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG-MDN--TVKIWSMKEFWTY 210 (369)
Q Consensus 137 ~~~~~~~l-~s~~~dg~--i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~--~v~i~d~~~~~~~ 210 (369)
+| +++.| ++.+.++. |.+||+.+++... +. .+........|+| +++.++..+ .+| .|+++|+..+.
T Consensus 254 SP-DG~~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt---~~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~~-- 325 (435)
T PRK05137 254 SP-DGRKVVMSLSQGGNTDIYTMDLRSGTTTR-LT---DSPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGSN-- 325 (435)
T ss_pred CC-CCCEEEEEEecCCCceEEEEECCCCceEE-cc---CCCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCCC--
Confidence 99 66654 56666665 7777888776543 43 3555667789999 777666655 333 57777766521
Q ss_pred eeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecC---CeEEEecCCCCCCCCCCCccceeeec
Q 017553 211 VEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVD---NEIVLWEPKMKEQSPGEGTADILQKY 285 (369)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~ 285 (369)
...+..+...+....|+ |+.++....+ ..|.+||+..... ..+
T Consensus 326 ----------------------~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~----------~~l 373 (435)
T PRK05137 326 ----------------------PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE----------RIL 373 (435)
T ss_pred ----------------------eEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce----------Eec
Confidence 11122223334445565 7777766543 3588888755431 111
Q ss_pred cCCCCCeeEEEEeecCCccEEEE-ecCC-----CeEEEEEccCCCceeEEEeecCCCccceEEEEecCC
Q 017553 286 PVPECDIWFIKFSCDFHYNAAAI-GNRE-----GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYD 348 (369)
Q Consensus 286 ~~~~~~i~~~~~s~~~~~~~l~~-~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 348 (369)
.. ...+....|+||++ .|+. .... ..++++|+..+.. ..+.. .+.+...+|+|-
T Consensus 374 t~-~~~~~~p~~spDG~--~i~~~~~~~~~~~~~~L~~~dl~g~~~---~~l~~---~~~~~~p~Wsp~ 433 (435)
T PRK05137 374 TS-GFLVEGPTWAPNGR--VIMFFRQTPGSGGAPKLYTVDLTGRNE---REVPT---PGDASDPAWSPL 433 (435)
T ss_pred cC-CCCCCCCeECCCCC--EEEEEEccCCCCCcceEEEEECCCCce---EEccC---CCCccCcccCCC
Confidence 11 12356789999997 4443 3322 3688888877643 23321 134566778763
No 243
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.56 E-value=1.5e-12 Score=98.98 Aligned_cols=256 Identities=14% Similarity=0.142 Sum_probs=160.8
Q ss_pred CCcCeEEEEEeeccCCCcc-EEEEecCCc-EEEEEecCCceeEEEeeeccCCcccce-eEEEeeecCCCccEEEEeecCC
Q 017553 32 GKRPLYAVVFNFIDSRYFN-VFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESF-YTVSWACNVDGIPFLVAGGING 108 (369)
Q Consensus 32 h~~~v~~~~~s~~~~~~~~-~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~g~~~l~~~~~dg 108 (369)
.+..++.+.|+- .+.+|. .++-+-..+ |.+|..........+.+... ..-.+ .+++..+++.+. -++++..+|
T Consensus 68 dts~~~dm~w~~-~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~--~ki~~~~~lslD~~~~~~-~i~vs~s~G 143 (339)
T KOG0280|consen 68 DTSTEFDMLWRI-RETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSS--KKISVVEALSLDISTSGT-KIFVSDSRG 143 (339)
T ss_pred cccccceeeeee-ccCCccceeeeccccceEEEEeeccceeeeeecccch--hhhhheeeeEEEeeccCc-eEEEEcCCC
Confidence 345677777775 222455 445555555 88888766555555554332 11122 244444558788 799999999
Q ss_pred eEEEEEcCCcc--ccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEcc-CCcEEEEeeccCCCCCcEEEEEecCC
Q 017553 109 IIRVIDVSNEK--LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ-TGICILIFAGAGGHRNEVLSVDFHPS 185 (369)
Q Consensus 109 ~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~ 185 (369)
.+.+-+..... .+++++.|.-+++...|+..+++++++|+.|+.+..||++ .++.+.. ...-|...|.++.-+|.
T Consensus 144 ~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~--n~kvH~~GV~SI~ss~~ 221 (339)
T KOG0280|consen 144 SISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH--NSKVHTSGVVSIYSSPP 221 (339)
T ss_pred cEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee--cceeeecceEEEecCCC
Confidence 99966655553 3558999999999999999888999999999999999999 3444443 22258999999999987
Q ss_pred CceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeeeC---cEEEEeecCCeE
Q 017553 186 DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLG---DFILSKSVDNEI 262 (369)
Q Consensus 186 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~d~~i 262 (369)
.+.++++|+.|-.|++||.|+.. +|+.... -.+.|..+.+.+ ..++.++.-+-.
T Consensus 222 ~~~~I~TGsYDe~i~~~DtRnm~----------------------kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ 278 (339)
T KOG0280|consen 222 KPTYIATGSYDECIRVLDTRNMG----------------------KPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGA 278 (339)
T ss_pred CCceEEEeccccceeeeehhccc----------------------CccccCc-cccceEEEEecchhhhHHHHHHHhcCc
Confidence 89999999999999999999732 2222211 125566666652 233444444556
Q ss_pred EEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEec-CCCeEE-EEEccC
Q 017553 263 VLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN-REGKIF-VWELQS 322 (369)
Q Consensus 263 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~-~dg~i~-i~d~~~ 322 (369)
+|-+....... ........+.|.+-...-.|..-. .++++++ .|..++ +|-.-+
T Consensus 279 ki~~~~~~~~e----~~~~~~s~~~hdSl~YG~DWd~~~--~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 279 KILDSSDKVLE----FQIVLPSDKIHDSLCYGGDWDSKD--SFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred eEEEecccccc----hheeeeccccccceeecccccccc--ceeeeeeccccceeeeeeecc
Confidence 66666554321 111334444554444444442221 2566643 444433 554333
No 244
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.54 E-value=1.5e-12 Score=114.98 Aligned_cols=189 Identities=20% Similarity=0.286 Sum_probs=140.9
Q ss_pred ccEEEEecCCcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccc
Q 017553 49 FNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHG 128 (369)
Q Consensus 49 ~~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 128 (369)
.+.....+.+.+.+||...+.....++.- ...--..++-+-.+++.- ++++|+.-+.|.+|+....+....+.+|.
T Consensus 100 k~i~l~~~~ns~~i~d~~~~~~~~~i~~~---er~~l~~~~~~g~s~~~~-~i~~gsv~~~iivW~~~~dn~p~~l~GHe 175 (967)
T KOG0974|consen 100 KKIALVTSRNSLLIRDSKNSSVLSKIQSD---ERCTLYSSLIIGDSAEEL-YIASGSVFGEIIVWKPHEDNKPIRLKGHE 175 (967)
T ss_pred ceEEEEEcCceEEEEecccCceehhcCCC---ceEEEEeEEEEeccCcEE-EEEeccccccEEEEeccccCCcceecccC
Confidence 34444455555999998877766555531 111112233344445555 89999999999999987544444688999
Q ss_pred cceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEE-EeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCc
Q 017553 129 DSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICIL-IFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEF 207 (369)
Q Consensus 129 ~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~ 207 (369)
+.|..+.|+. ++.++++.|+|.++|+|++.+.+... ..- +|...|..++|+| + .+++++.|.+.++|+....
T Consensus 176 G~iF~i~~s~-dg~~i~s~SdDRsiRlW~i~s~~~~~~~~f---gHsaRvw~~~~~~-n--~i~t~gedctcrvW~~~~~ 248 (967)
T KOG0974|consen 176 GSIFSIVTSL-DGRYIASVSDDRSIRLWPIDSREVLGCTGF---GHSARVWACCFLP-N--RIITVGEDCTCRVWGVNGT 248 (967)
T ss_pred CceEEEEEcc-CCcEEEEEecCcceeeeecccccccCcccc---cccceeEEEEecc-c--eeEEeccceEEEEEecccc
Confidence 9999999999 99999999999999999999987766 333 7999999999998 4 8999999999999976651
Q ss_pred eeeeeeeeeccCCCCCCCCceeecceeeeccCC-Cceeeeeee--CcEEEEeecCCeEEEecCCCCCC
Q 017553 208 WTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS-NYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQ 272 (369)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~ 272 (369)
.+..+..|. ..+..+... ...+++++.|+.+++|++.....
T Consensus 249 ------------------------~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~ 292 (967)
T KOG0974|consen 249 ------------------------QLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGL 292 (967)
T ss_pred ------------------------eehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcccc
Confidence 122344443 346666665 45788999999999999987643
No 245
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=6.8e-12 Score=108.09 Aligned_cols=233 Identities=12% Similarity=0.096 Sum_probs=134.2
Q ss_pred EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeec---CCeEEEEEcCCccccceeeccccceEEEEe
Q 017553 60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI---NGIIRVIDVSNEKLHKSFVGHGDSINEIRT 136 (369)
Q Consensus 60 v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 136 (369)
|.++|. ++.....+. .+...+...+|+ |||+ .|+..+. ...|.+||+.+++.. .+....+.+...+|
T Consensus 178 L~~~D~-dG~~~~~l~-----~~~~~v~~p~wS--PDG~-~la~~s~~~~~~~I~~~dl~~g~~~-~l~~~~g~~~~~~~ 247 (427)
T PRK02889 178 LQISDA-DGQNAQSAL-----SSPEPIISPAWS--PDGT-KLAYVSFESKKPVVYVHDLATGRRR-VVANFKGSNSAPAW 247 (427)
T ss_pred EEEECC-CCCCceEec-----cCCCCcccceEc--CCCC-EEEEEEccCCCcEEEEEECCCCCEE-EeecCCCCccceEE
Confidence 666664 344333333 245567778888 9998 6665543 246999999887653 23334455678999
Q ss_pred cCCCCceEE-EEeCCCcEEEEEc--cCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEe-eCCcEEEEEccCceeeee
Q 017553 137 QPLKPSLVV-SASKDESVRLWNV--QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG-MDNTVKIWSMKEFWTYVE 212 (369)
Q Consensus 137 ~~~~~~~l~-s~~~dg~i~vwd~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~v~i~d~~~~~~~~~ 212 (369)
+| +++.|+ +.+.+|...+|.+ ..+. ...+. .+........|+| +++.|+..+ .++...+|.+......
T Consensus 248 SP-DG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt---~~~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g~-- 319 (427)
T PRK02889 248 SP-DGRTLAVALSRDGNSQIYTVNADGSG-LRRLT---QSSGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASGGA-- 319 (427)
T ss_pred CC-CCCEEEEEEccCCCceEEEEECCCCC-cEECC---CCCCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCCCc--
Confidence 99 666554 6777887666654 4443 44444 3555566788999 776666544 3566677765431100
Q ss_pred eeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCC---eEEEecCCCCCCCCCCCccceeeeccC
Q 017553 213 KSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDN---EIVLWEPKMKEQSPGEGTADILQKYPV 287 (369)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~ 287 (369)
...+...........|+ |++++..+.++ .|.+||+.+++. ..+..
T Consensus 320 --------------------~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~----------~~lt~ 369 (427)
T PRK02889 320 --------------------AQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV----------TALTD 369 (427)
T ss_pred --------------------eEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe----------EEccC
Confidence 00111111122234454 88887766554 599999987642 11111
Q ss_pred CCCCeeEEEEeecCCccEEEEec-CCC--eEEEEEccCCCceeEEEeecCCCccceEEEEecCC
Q 017553 288 PECDIWFIKFSCDFHYNAAAIGN-REG--KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYD 348 (369)
Q Consensus 288 ~~~~i~~~~~s~~~~~~~l~~~~-~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 348 (369)
........|+|+++ .|+..+ ..| .+.+.++... ....+. .+.+.+...+|+|-
T Consensus 370 -~~~~~~p~~spdg~--~l~~~~~~~g~~~l~~~~~~g~---~~~~l~--~~~g~~~~p~wsp~ 425 (427)
T PRK02889 370 -TTRDESPSFAPNGR--YILYATQQGGRSVLAAVSSDGR---IKQRLS--VQGGDVREPSWGPF 425 (427)
T ss_pred -CCCccCceECCCCC--EEEEEEecCCCEEEEEEECCCC---ceEEee--cCCCCCCCCccCCC
Confidence 12235679999998 444433 333 3556666432 233333 33356777888874
No 246
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.53 E-value=3.1e-12 Score=99.44 Aligned_cols=261 Identities=15% Similarity=0.191 Sum_probs=162.5
Q ss_pred ccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCcc-----ccceeecc------------ccceEEEEecCCC-CceE
Q 017553 83 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK-----LHKSFVGH------------GDSINEIRTQPLK-PSLV 144 (369)
Q Consensus 83 ~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~-----~~~~~~~~------------~~~v~~~~~~~~~-~~~l 144 (369)
.+-|.++.|. ..|. +|++|..+|.|.++.-.... ....++.| ...|..+.|.++. ...+
T Consensus 25 adiis~vef~--~~Ge-~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~F 101 (433)
T KOG1354|consen 25 ADIISAVEFD--HYGE-RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEF 101 (433)
T ss_pred hcceeeEEee--cccc-eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEE
Confidence 4456677777 8898 99999999999999743222 12233333 2468899998732 3367
Q ss_pred EEEeCCCcEEEEEccCCcEEE---------------Eee------------------ccCCCCCcEEEEEecCCCceEEE
Q 017553 145 VSASKDESVRLWNVQTGICIL---------------IFA------------------GAGGHRNEVLSVDFHPSDIYRIA 191 (369)
Q Consensus 145 ~s~~~dg~i~vwd~~~~~~~~---------------~~~------------------~~~~~~~~v~~~~~~~~~~~~l~ 191 (369)
+..+.|.+|++|-+....... .++ -..+|...|+++.++. +...++
T Consensus 102 LlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et~l 180 (433)
T KOG1354|consen 102 LLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKETFL 180 (433)
T ss_pred EEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-ccceEe
Confidence 777889999999886432111 000 0127888999999997 777777
Q ss_pred EEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee---CcEEEEeecCCeEEEecCC
Q 017553 192 SCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPK 268 (369)
Q Consensus 192 ~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~i~d~~ 268 (369)
++ .|=.|.+|++.-... .+...+. ....+..-...|++..|+ .+.++-.+..|+|++-|++
T Consensus 181 SA-DdLRINLWnlei~d~----sFnIVDI-----------KP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR 244 (433)
T KOG1354|consen 181 SA-DDLRINLWNLEIIDQ----SFNIVDI-----------KPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMR 244 (433)
T ss_pred ec-cceeeeeccccccCC----ceeEEEc-----------cccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeech
Confidence 66 477899999876221 1110000 001111223346666665 5688888999999999999
Q ss_pred CCCCCCC-----CCccce--eeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEee-cCC-----
Q 017553 269 MKEQSPG-----EGTADI--LQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLS-HAQ----- 335 (369)
Q Consensus 269 ~~~~~~~-----~~~~~~--~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~----- 335 (369)
....... ..+..+ ..-+..--..|..+.|+++|+ ++++-. --+|++||+.... .++...+ |..
T Consensus 245 ~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGr--yilsRD-yltvk~wD~nme~-~pv~t~~vh~~lr~kL 320 (433)
T KOG1354|consen 245 QSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGR--YILSRD-YLTVKLWDLNMEA-KPVETYPVHEYLRSKL 320 (433)
T ss_pred hhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCc--EEEEec-cceeEEEeccccC-CcceEEeehHhHHHHH
Confidence 5432100 000000 111111225688899999996 776543 3689999995432 2233332 100
Q ss_pred ----Cccce---EEEEecCCCCEEEEeecCCeEEEEecC
Q 017553 336 ----SKSPI---RQTAMSYDGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 336 ----~~~~v---~~~~~s~~~~~l~s~~~dg~i~vw~~~ 367 (369)
....| ..++|+-++.+++||+....++++++.
T Consensus 321 c~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~ 359 (433)
T KOG1354|consen 321 CSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLA 359 (433)
T ss_pred HHHhhccchhheeEEEEcCCcceEecccccceEEEecCC
Confidence 01122 457899999999999999999999854
No 247
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=5.9e-12 Score=107.22 Aligned_cols=292 Identities=12% Similarity=0.074 Sum_probs=195.3
Q ss_pred CCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEee----------eccCCcccceeEEEeeecCCCccE
Q 017553 32 GKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQS----------YVDEDKEESFYTVSWACNVDGIPF 100 (369)
Q Consensus 32 h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~----------~~~~~~~~~v~~~~~~~~~~g~~~ 100 (369)
......|++|+. ...++|+||.|+ ++|..+.+...-...++ ...+.|...|..+.|. .+.+ .
T Consensus 13 nnvkL~c~~WNk----e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWN--e~~Q-K 85 (1189)
T KOG2041|consen 13 NNVKLHCAEWNK----ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWN--ENNQ-K 85 (1189)
T ss_pred CCceEEEEEEcc----cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEec--cccc-c
Confidence 345688999998 578999999999 99988765432222111 1133789999999997 5555 8
Q ss_pred EEEeecCCeEEEEEcCCccccceeec--cccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEE
Q 017553 101 LVAGGINGIIRVIDVSNEKLHKSFVG--HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVL 178 (369)
Q Consensus 101 l~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~ 178 (369)
|-+...+|.|.+|-+-.+.....+.. ..+-|.+++|+. ++..++..-.||.|.+=.+..++ +.--. -......
T Consensus 86 LTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~-dG~kIcIvYeDGavIVGsvdGNR-IwgKe---Lkg~~l~ 160 (1189)
T KOG2041|consen 86 LTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL-DGTKICIVYEDGAVIVGSVDGNR-IWGKE---LKGQLLA 160 (1189)
T ss_pred ccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC-CCcEEEEEEccCCEEEEeeccce-ecchh---cchhecc
Confidence 99999999999999988876555432 456789999999 89999999999999888776433 32211 0112344
Q ss_pred EEEecCCCceEEEEEeeCCcEEEEEccCcee---eeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee------
Q 017553 179 SVDFHPSDIYRIASCGMDNTVKIWSMKEFWT---YVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL------ 249 (369)
Q Consensus 179 ~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------ 249 (369)
.+.|++ +...++.+-.+|.+.+||.+..-. .....+... ..+...+..|..+.|.
T Consensus 161 hv~ws~-D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~t---------------g~~s~~~~kia~i~w~~g~~~~ 224 (1189)
T KOG2041|consen 161 HVLWSE-DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGT---------------GIFSNFPTKIAEIEWNTGPYQP 224 (1189)
T ss_pred ceeecc-cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeee---------------eeecCCCccccceeeccCcccc
Confidence 688999 878888888899999999876211 000000000 0111122234444443
Q ss_pred ----CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCC---------CeEE
Q 017553 250 ----GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE---------GKIF 316 (369)
Q Consensus 250 ----~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~d---------g~i~ 316 (369)
...++++-..|.+.+..-.+...+ .+.. . ...+..+.|+++|. +|++++.+ +.|.
T Consensus 225 v~pdrP~lavcy~nGr~QiMR~eND~~P-------vv~d--t-gm~~vgakWnh~G~--vLAvcG~~~da~~~~d~n~v~ 292 (1189)
T KOG2041|consen 225 VPPDRPRLAVCYANGRMQIMRSENDPEP-------VVVD--T-GMKIVGAKWNHNGA--VLAVCGNDSDADEPTDSNKVH 292 (1189)
T ss_pred CCCCCCEEEEEEcCceehhhhhcCCCCC-------eEEe--c-ccEeecceecCCCc--EEEEccCcccccCccccceEE
Confidence 237888888898888655443210 1111 1 24677889999996 78877643 3566
Q ss_pred EEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCCC
Q 017553 317 VWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIPT 369 (369)
Q Consensus 317 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~~ 369 (369)
+|..-. .....++ .....|++++|-..|-.+|.+ .|+.|++=+++++
T Consensus 293 Fysp~G---~i~gtlk--vpg~~It~lsWEg~gLriA~A-vdsfiyfanIRP~ 339 (1189)
T KOG2041|consen 293 FYSPYG---HIVGTLK--VPGSCITGLSWEGTGLRIAIA-VDSFIYFANIRPE 339 (1189)
T ss_pred Eeccch---hheEEEe--cCCceeeeeEEcCCceEEEEE-ecceEEEEeeccc
Confidence 665443 2445555 334689999999888888766 5788888887764
No 248
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.52 E-value=2e-11 Score=105.80 Aligned_cols=209 Identities=15% Similarity=0.100 Sum_probs=130.3
Q ss_pred CeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCC---CcEEEEEccCCcEEEEeeccCCCCCcEEEEEecC
Q 017553 108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD---ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHP 184 (369)
Q Consensus 108 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 184 (369)
..|.++|.. +...+.+..+...+...+|+| +++.|+.+..+ ..|++||+.+++..... .+...+.+++|+|
T Consensus 170 ~~l~~~d~~-g~~~~~l~~~~~~~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~~~~~----~~~~~~~~~~~sp 243 (417)
T TIGR02800 170 YELQVADYD-GANPQTITRSREPILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQREKVA----SFPGMNGAPAFSP 243 (417)
T ss_pred ceEEEEcCC-CCCCEEeecCCCceecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCEEEee----cCCCCccceEECC
Confidence 358888875 344455656777789999999 78877776543 47999999988654433 2556677899999
Q ss_pred CCceEE-EEEeeCC--cEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeec-
Q 017553 185 SDIYRI-ASCGMDN--TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV- 258 (369)
Q Consensus 185 ~~~~~l-~~~~~d~--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~- 258 (369)
+++.| ++.+.++ .|++||+.++.. ..+..+........|+ ++.|+..+.
T Consensus 244 -Dg~~l~~~~~~~~~~~i~~~d~~~~~~------------------------~~l~~~~~~~~~~~~s~dg~~l~~~s~~ 298 (417)
T TIGR02800 244 -DGSKLAVSLSKDGNPDIYVMDLDGKQL------------------------TRLTNGPGIDTEPSWSPDGKSIAFTSDR 298 (417)
T ss_pred -CCCEEEEEECCCCCccEEEEECCCCCE------------------------EECCCCCCCCCCEEECCCCCEEEEEECC
Confidence 66544 5555554 588888876321 1112222222334454 667665544
Q ss_pred CC--eEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCC---eEEEEEccCCCceeEEEeec
Q 017553 259 DN--EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG---KIFVWELQSSPPVLIARLSH 333 (369)
Q Consensus 259 d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~ 333 (369)
++ .|.++|+.+.+ ...+...........|+|+++ +++..+.++ .|.+||+.++... .+..
T Consensus 299 ~g~~~iy~~d~~~~~----------~~~l~~~~~~~~~~~~spdg~--~i~~~~~~~~~~~i~~~d~~~~~~~---~l~~ 363 (417)
T TIGR02800 299 GGSPQIYMMDADGGE----------VRRLTFRGGYNASPSWSPDGD--LIAFVHREGGGFNIAVMDLDGGGER---VLTD 363 (417)
T ss_pred CCCceEEEEECCCCC----------EEEeecCCCCccCeEECCCCC--EEEEEEccCCceEEEEEeCCCCCeE---EccC
Confidence 33 57777876553 222222334556789999997 666655554 7899998876432 2221
Q ss_pred CCCccceEEEEecCCCCEEEEeecCC---eEEEEe
Q 017553 334 AQSKSPIRQTAMSYDGSTILSCCEDG---AIWRWD 365 (369)
Q Consensus 334 ~~~~~~v~~~~~s~~~~~l~s~~~dg---~i~vw~ 365 (369)
. .......|+|||++|+.++.++ .+++.+
T Consensus 364 ~---~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~ 395 (417)
T TIGR02800 364 T---GLDESPSFAPNGRMILYATTRGGRGVLGLVS 395 (417)
T ss_pred C---CCCCCceECCCCCEEEEEEeCCCcEEEEEEE
Confidence 1 1234568999999888877654 344444
No 249
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.51 E-value=1.5e-09 Score=88.92 Aligned_cols=272 Identities=10% Similarity=-0.001 Sum_probs=160.7
Q ss_pred CcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEee---------cCCeEEEEEcCCccccceeeccc
Q 017553 58 NRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG---------INGIIRVIDVSNEKLHKSFVGHG 128 (369)
Q Consensus 58 ~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~---------~dg~i~vwd~~~~~~~~~~~~~~ 128 (369)
+.|.+.|..+++.+..+..-.. +- .+ ++ |||+.+.++.+ .+..|.+||+.+.+.+.++..-.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~-----P~-~~-~s--pDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~ 97 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFL-----PN-PV-VA--SDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPE 97 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCC-----Cc-ee-EC--CCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCC
Confidence 4599999999988888874221 11 12 44 99994444555 57899999999999988887322
Q ss_pred -------cceEEEEecCCCCceEEEEe-C-CCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcE
Q 017553 129 -------DSINEIRTQPLKPSLVVSAS-K-DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTV 199 (369)
Q Consensus 129 -------~~v~~~~~~~~~~~~l~s~~-~-dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v 199 (369)
.....++++| ++++|+... . +..|.+.|+.+++.+..+.. .+...-...++ +.. ..-+.||..
T Consensus 98 ~p~~~~~~~~~~~~ls~-dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v----p~~~~vy~t~e-~~~--~~~~~Dg~~ 169 (352)
T TIGR02658 98 GPRFLVGTYPWMTSLTP-DNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV----PDCYHIFPTAN-DTF--FMHCRDGSL 169 (352)
T ss_pred CchhhccCccceEEECC-CCCEEEEecCCCCCEEEEEECCCCcEEEEEeC----CCCcEEEEecC-Ccc--EEEeecCce
Confidence 2334789999 788777665 3 78999999999999998873 22222222322 222 233456666
Q ss_pred EEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeee-eCcEEEEeecCCeEEEecCCCCCCCCCCCc
Q 017553 200 KIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW-LGDFILSKSVDNEIVLWEPKMKEQSPGEGT 278 (369)
Q Consensus 200 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 278 (369)
....+....+........-.. ...++ ..++ .... ++.++..... |.|.+.|+......... .
T Consensus 170 ~~v~~d~~g~~~~~~~~vf~~--------~~~~v---~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~-~ 232 (352)
T TIGR02658 170 AKVGYGTKGNPKIKPTEVFHP--------EDEYL---INHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLP-A 232 (352)
T ss_pred EEEEecCCCceEEeeeeeecC--------Ccccc---ccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecc-e
Confidence 655554422211111000000 00000 0111 1111 3666666555 99999997655422111 1
Q ss_pred cceeeec----cCCCCCeeEEEEeecCCccEEEEe--------cCCCeEEEEEccCCCceeEEEeecCCCccceEEEEec
Q 017553 279 ADILQKY----PVPECDIWFIKFSCDFHYNAAAIG--------NREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMS 346 (369)
Q Consensus 279 ~~~~~~~----~~~~~~i~~~~~s~~~~~~~l~~~--------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s 346 (369)
...+..- ........-++++++++..+++.- ...+.|.++|..+. +.+..+... ..+..++++
T Consensus 233 ~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~--kvi~~i~vG---~~~~~iavS 307 (352)
T TIGR02658 233 IEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG--KRLRKIELG---HEIDSINVS 307 (352)
T ss_pred eeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC--eEEEEEeCC---CceeeEEEC
Confidence 1111000 011233445999999984333231 12268999999888 455555422 578899999
Q ss_pred CCCC-EEEEee-cCCeEEEEecCC
Q 017553 347 YDGS-TILSCC-EDGAIWRWDAIP 368 (369)
Q Consensus 347 ~~~~-~l~s~~-~dg~i~vw~~~~ 368 (369)
||++ +|++.. .++.|.+.|..+
T Consensus 308 ~Dgkp~lyvtn~~s~~VsViD~~t 331 (352)
T TIGR02658 308 QDAKPLLYALSTGDKTLYIFDAET 331 (352)
T ss_pred CCCCeEEEEeCCCCCcEEEEECcC
Confidence 9999 887666 678899999864
No 250
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.49 E-value=1.1e-11 Score=94.01 Aligned_cols=147 Identities=16% Similarity=0.303 Sum_probs=99.0
Q ss_pred EEeeecCCCccEEEEee---------cCCeEEEEEcCC-ccccceeec-cccceEEEEecCCCCceEEE--EeCCCcEEE
Q 017553 89 VSWACNVDGIPFLVAGG---------INGIIRVIDVSN-EKLHKSFVG-HGDSINEIRTQPLKPSLVVS--ASKDESVRL 155 (369)
Q Consensus 89 ~~~~~~~~g~~~l~~~~---------~dg~i~vwd~~~-~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s--~~~dg~i~v 155 (369)
+.|+ ++|..+++... .-|...+|.++. +..+..+.- ..++|.+++|+| +++.|+. |..++.|.+
T Consensus 11 ~~W~--~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP-~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 11 LHWQ--PSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSP-NGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEec--ccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECc-CCCEEEEEEccCCcccEE
Confidence 5555 88884444443 123455665532 234444443 345799999999 6666543 446789999
Q ss_pred EEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeC---CcEEEEEccCceeeeeeeeeccCCCCCCCCceeecc
Q 017553 156 WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD---NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP 232 (369)
Q Consensus 156 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (369)
||++ ++.+..+ +...+..+.|+| +|+++++++.+ |.|.+||.++.+ .
T Consensus 88 yd~~-~~~i~~~-----~~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~~~-----------------------~ 137 (194)
T PF08662_consen 88 YDVK-GKKIFSF-----GTQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRKKK-----------------------K 137 (194)
T ss_pred EcCc-ccEeEee-----cCCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCCCE-----------------------E
Confidence 9996 6666665 345778999999 88888888754 569999999732 2
Q ss_pred eeeeccCCCceeeeeee--CcEEEEeec------CCeEEEecCCCC
Q 017553 233 VFIASVHSNYVDCNRWL--GDFILSKSV------DNEIVLWEPKMK 270 (369)
Q Consensus 233 ~~~~~~~~~~v~~~~~~--~~~l~~~~~------d~~i~i~d~~~~ 270 (369)
+... ....+..++|+ |++++++.. |+.++||+....
T Consensus 138 i~~~--~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 138 ISTF--EHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred eecc--ccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence 2222 22346788997 888888764 778999998643
No 251
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.48 E-value=9.5e-10 Score=86.71 Aligned_cols=281 Identities=11% Similarity=0.034 Sum_probs=167.9
Q ss_pred CCcEEEEEecCCc-eeEEEeeeccCCcccceeEEEeeecCCCccEEEEeec---CCeEEEEEcCC--ccc--cceeeccc
Q 017553 57 GNRVTVYQCLEGG-VIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI---NGIIRVIDVSN--EKL--HKSFVGHG 128 (369)
Q Consensus 57 ~~~v~iw~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~---dg~i~vwd~~~--~~~--~~~~~~~~ 128 (369)
..+|++|++.+.. .+..++.. ...+...-++|. |+++ .|.++.. +|.|-.|.++. |++ +.......
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v---~~~~nptyl~~~--~~~~-~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g 88 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLV---AELGNPTYLAVN--PDQR-HLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPG 88 (346)
T ss_pred CCceEEEEEeCcccccchhhhc---cccCCCceEEEC--CCCC-EEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCC
Confidence 3449999988332 23322222 345566678888 8888 7777754 47788887764 443 22222222
Q ss_pred cceEEEEecCCCCceEEEEeC-CCcEEEEEccCCcEEEEeeccCCCCCc----------EEEEEecCCCceEEEEEee-C
Q 017553 129 DSINEIRTQPLKPSLVVSASK-DESVRLWNVQTGICILIFAGAGGHRNE----------VLSVDFHPSDIYRIASCGM-D 196 (369)
Q Consensus 129 ~~v~~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~~l~~~~~-d 196 (369)
.+-+.+++++ ++++++++.. .|.|.++-++....+........|.+. +....+.| +++++++... -
T Consensus 89 ~~p~yvsvd~-~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~ 166 (346)
T COG2706 89 SPPCYVSVDE-DGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGT 166 (346)
T ss_pred CCCeEEEECC-CCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecCC
Confidence 3448899999 8888887764 589999998763222211111124444 78899999 7777776643 3
Q ss_pred CcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEe-ecCCeEEEecCCCCCC-
Q 017553 197 NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSK-SVDNEIVLWEPKMKEQ- 272 (369)
Q Consensus 197 ~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~-~~d~~i~i~d~~~~~~- 272 (369)
-.|.+|++..+.......... ......+.+.|. +++.... --+++|.+|.......
T Consensus 167 Dri~~y~~~dg~L~~~~~~~v--------------------~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~ 226 (346)
T COG2706 167 DRIFLYDLDDGKLTPADPAEV--------------------KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGK 226 (346)
T ss_pred ceEEEEEcccCcccccccccc--------------------CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCce
Confidence 479999998643322211111 122334556665 6655444 4489999999887421
Q ss_pred -CCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEec-CCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCC
Q 017553 273 -SPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN-REGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGS 350 (369)
Q Consensus 273 -~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 350 (369)
............+. .......+.++++|+ +|.++. ....|.+|.+.....++........+........|++.|+
T Consensus 227 ~~~lQ~i~tlP~dF~-g~~~~aaIhis~dGr--FLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~ 303 (346)
T COG2706 227 FEELQTIDTLPEDFT-GTNWAAAIHISPDGR--FLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGR 303 (346)
T ss_pred EEEeeeeccCccccC-CCCceeEEEECCCCC--EEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCC
Confidence 11010010111111 234567889999997 555543 3457889988765433332222224445578999999999
Q ss_pred EEEEeecCC-eEEEEecCC
Q 017553 351 TILSCCEDG-AIWRWDAIP 368 (369)
Q Consensus 351 ~l~s~~~dg-~i~vw~~~~ 368 (369)
+|+++..++ .|.+|.+..
T Consensus 304 ~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 304 FLIAANQKSDNITVFERDK 322 (346)
T ss_pred EEEEEccCCCcEEEEEEcC
Confidence 999988654 588888764
No 252
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.48 E-value=4.6e-11 Score=103.57 Aligned_cols=210 Identities=14% Similarity=0.080 Sum_probs=124.5
Q ss_pred EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecC---CeEEEEEcCCccccceeeccccceEEEEe
Q 017553 60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN---GIIRVIDVSNEKLHKSFVGHGDSINEIRT 136 (369)
Q Consensus 60 v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 136 (369)
|.++|... .....+. .+...+...+|+ |+|+ .|+.+... ..|++||+.+++.. .+..+.+.+.+++|
T Consensus 172 l~~~d~~g-~~~~~l~-----~~~~~~~~p~~S--pdg~-~la~~~~~~~~~~i~v~d~~~g~~~-~~~~~~~~~~~~~~ 241 (417)
T TIGR02800 172 LQVADYDG-ANPQTIT-----RSREPILSPAWS--PDGQ-KLAYVSFESGKPEIYVQDLATGQRE-KVASFPGMNGAPAF 241 (417)
T ss_pred EEEEcCCC-CCCEEee-----cCCCceecccCC--CCCC-EEEEEEcCCCCcEEEEEECCCCCEE-EeecCCCCccceEE
Confidence 77777543 3333333 234456667777 9999 66665433 47999999887543 23335566778999
Q ss_pred cCCCCceE-EEEeCCC--cEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEee-CC--cEEEEEccCceee
Q 017553 137 QPLKPSLV-VSASKDE--SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM-DN--TVKIWSMKEFWTY 210 (369)
Q Consensus 137 ~~~~~~~l-~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~--~v~i~d~~~~~~~ 210 (369)
+| +++.| ++.+.++ .|++||+.+++... +. .+........|+| +++.|+..+. ++ .|+++|+.+++
T Consensus 242 sp-Dg~~l~~~~~~~~~~~i~~~d~~~~~~~~-l~---~~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~~-- 313 (417)
T TIGR02800 242 SP-DGSKLAVSLSKDGNPDIYVMDLDGKQLTR-LT---NGPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGGE-- 313 (417)
T ss_pred CC-CCCEEEEEECCCCCccEEEEECCCCCEEE-CC---CCCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCCCC--
Confidence 99 66655 4555544 58889998776443 33 2444455678999 7666655543 34 46667766521
Q ss_pred eeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCC---eEEEecCCCCCCCCCCCccceeeec
Q 017553 211 VEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDN---EIVLWEPKMKEQSPGEGTADILQKY 285 (369)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~ 285 (369)
...+..+........|+ +++++.++.++ .|.+||+.+... ..+
T Consensus 314 ----------------------~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~----------~~l 361 (417)
T TIGR02800 314 ----------------------VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE----------RVL 361 (417)
T ss_pred ----------------------EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe----------EEc
Confidence 11122233344555665 77888777765 788999876431 111
Q ss_pred cCCCCCeeEEEEeecCCccEEEEecCCC---eEEEEEccC
Q 017553 286 PVPECDIWFIKFSCDFHYNAAAIGNREG---KIFVWELQS 322 (369)
Q Consensus 286 ~~~~~~i~~~~~s~~~~~~~l~~~~~dg---~i~i~d~~~ 322 (369)
... .......|+|+++ .|+..+.++ .+++.+...
T Consensus 362 ~~~-~~~~~p~~spdg~--~l~~~~~~~~~~~l~~~~~~g 398 (417)
T TIGR02800 362 TDT-GLDESPSFAPNGR--MILYATTRGGRGVLGLVSTDG 398 (417)
T ss_pred cCC-CCCCCceECCCCC--EEEEEEeCCCcEEEEEEECCC
Confidence 111 1234468999997 454444332 355555443
No 253
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=8.8e-12 Score=107.02 Aligned_cols=332 Identities=14% Similarity=0.117 Sum_probs=212.7
Q ss_pred ccceeeeeecccCCcCeEEEEEeeccCC--------CccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEE
Q 017553 20 KREYRVTNKLQEGKRPLYAVVFNFIDSR--------YFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVS 90 (369)
Q Consensus 20 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~--------~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~ 90 (369)
...++.++.+..|...|+.+.|.|.+.+ ..-++|++.-.| |.+||...+.....++ .+..++..++
T Consensus 42 s~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~-----~~~~~~qdl~ 116 (1062)
T KOG1912|consen 42 SRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLS-----HSNDSVQDLC 116 (1062)
T ss_pred hhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhc-----CCCcchhhee
Confidence 4677788888999999999999985421 234567777666 9999999988887777 5777888999
Q ss_pred eeecCCCc-cEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccC-------Cc
Q 017553 91 WACNVDGI-PFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT-------GI 162 (369)
Q Consensus 91 ~~~~~~g~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~-------~~ 162 (369)
|.+..+.. .+|++-.....|.+|+..+|+.............|+.+.|.+...+..-+..|.+.+-+.-. ++
T Consensus 117 W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk 196 (1062)
T KOG1912|consen 117 WVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGK 196 (1062)
T ss_pred eeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCce
Confidence 98765543 57777777789999999999988887766677888999998877777666667766655421 11
Q ss_pred EEEEeecc----------------------------------C------------------------------CCCCcEE
Q 017553 163 CILIFAGA----------------------------------G------------------------------GHRNEVL 178 (369)
Q Consensus 163 ~~~~~~~~----------------------------------~------------------------------~~~~~v~ 178 (369)
..+.-... . -..+.+.
T Consensus 197 ~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~ak 276 (1062)
T KOG1912|consen 197 EFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAK 276 (1062)
T ss_pred eEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcc
Confidence 11110000 0 0111222
Q ss_pred EEEecCC-CceEEEEEeeCCcEEEEEccC----------------cee-----eee--eeeeccC---------------
Q 017553 179 SVDFHPS-DIYRIASCGMDNTVKIWSMKE----------------FWT-----YVE--KSFTWTD--------------- 219 (369)
Q Consensus 179 ~~~~~~~-~~~~l~~~~~d~~v~i~d~~~----------------~~~-----~~~--~~~~~~~--------------- 219 (369)
-+.+-|+ ....|++...||.+.+|--+. +.+ ..+ ..+....
T Consensus 277 fv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g 356 (1062)
T KOG1912|consen 277 FVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSG 356 (1062)
T ss_pred eeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcc
Confidence 3334331 234577778888888886543 000 000 0000000
Q ss_pred ----------------------CCCCCCCceeec--------ceeeeccCCCceeeeeee-------------C------
Q 017553 220 ----------------------LPSKFPTKYVQF--------PVFIASVHSNYVDCNRWL-------------G------ 250 (369)
Q Consensus 220 ----------------------~~~~~~~~~~~~--------~~~~~~~~~~~v~~~~~~-------------~------ 250 (369)
....+....... .+.....|+....+.... +
T Consensus 357 ~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~ 436 (1062)
T KOG1912|consen 357 DSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGT 436 (1062)
T ss_pred hhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCcccee
Confidence 000000000000 011112344443333221 1
Q ss_pred -cEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEE---------ecCCCeEEEEEc
Q 017553 251 -DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAI---------GNREGKIFVWEL 320 (369)
Q Consensus 251 -~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~---------~~~dg~i~i~d~ 320 (369)
.+++.|...|+|.++|+.++. .-..+..|.+.|.++.|-...+ ++-. |..-+.+.+-|+
T Consensus 437 ~pLvAvGT~sGTV~vvdvst~~---------v~~~fsvht~~VkgleW~g~ss--lvSfsys~~n~~sg~vrN~l~vtdL 505 (1062)
T KOG1912|consen 437 VPLVAVGTNSGTVDVVDVSTNA---------VAASFSVHTSLVKGLEWLGNSS--LVSFSYSHVNSASGGVRNDLVVTDL 505 (1062)
T ss_pred eeeEEeecCCceEEEEEecchh---------hhhhhcccccceeeeeecccee--EEEeeeccccccccceeeeEEEEEc
Confidence 268899999999999999886 5677778888898888877654 2222 223356788899
Q ss_pred cCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 321 QSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
++|..+....++ ...+.+|..+..|..++||+..-.|.-+-+||+++
T Consensus 506 rtGlsk~fR~l~-~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt 552 (1062)
T KOG1912|consen 506 RTGLSKRFRGLQ-KPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKT 552 (1062)
T ss_pred ccccccccccCC-CCCcCcceeeeecccCceEEEEecccchHHHhhcc
Confidence 998654444333 35668999999999999999999999999999854
No 254
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.46 E-value=7e-09 Score=86.99 Aligned_cols=271 Identities=14% Similarity=0.136 Sum_probs=154.9
Q ss_pred ccceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCC----c-EEEEEecCC-ceeEEEeeeccCCcccceeEEEeee
Q 017553 20 KREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGN----R-VTVYQCLEG-GVIAALQSYVDEDKEESFYTVSWAC 93 (369)
Q Consensus 20 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~----~-v~iw~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~ 93 (369)
...+.....+. -......++++| ++++|.+.... + |..|.+... ..+..+..... ....-..+++.
T Consensus 24 ~g~l~~~~~~~-~~~~Ps~l~~~~----~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~--~g~~p~~i~~~- 95 (345)
T PF10282_consen 24 TGTLTLVQTVA-EGENPSWLAVSP----DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS--GGSSPCHIAVD- 95 (345)
T ss_dssp TTEEEEEEEEE-ESSSECCEEE-T----TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE--SSSCEEEEEEC-
T ss_pred CCCceEeeeec-CCCCCceEEEEe----CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeecc--CCCCcEEEEEe-
Confidence 34455444432 233456688888 56777777652 3 999998875 45555544321 22223335555
Q ss_pred cCCCccEEEEee-cCCeEEEEEcCC-ccccce---ee----------ccccceEEEEecCCCCceEEEEe-CCCcEEEEE
Q 017553 94 NVDGIPFLVAGG-INGIIRVIDVSN-EKLHKS---FV----------GHGDSINEIRTQPLKPSLVVSAS-KDESVRLWN 157 (369)
Q Consensus 94 ~~~g~~~l~~~~-~dg~i~vwd~~~-~~~~~~---~~----------~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~vwd 157 (369)
|+++ +|+++. .+|.|.++++.. +.+... +. .......++.|+| +++++++.. ....|.+|+
T Consensus 96 -~~g~-~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D~v~~~~ 172 (345)
T PF10282_consen 96 -PDGR-FLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGADRVYVYD 172 (345)
T ss_dssp -TTSS-EEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTTEEEEEE
T ss_pred -cCCC-EEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCCEEEEEE
Confidence 9999 666654 689999999976 332221 21 0123467899999 777666653 345899999
Q ss_pred ccCCc--EEE--EeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecce
Q 017553 158 VQTGI--CIL--IFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV 233 (369)
Q Consensus 158 ~~~~~--~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (369)
+.... ... .+.. ........++|+|++..++++.-.++.|.++++................+..
T Consensus 173 ~~~~~~~l~~~~~~~~--~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~---------- 240 (345)
T PF10282_consen 173 IDDDTGKLTPVDSIKV--PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG---------- 240 (345)
T ss_dssp E-TTS-TEEEEEEEEC--STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT----------
T ss_pred EeCCCceEEEeecccc--ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc----------
Confidence 97655 322 2221 3556688999999444455666667889999998321111111110000000
Q ss_pred eeeccCCCceeeeeee--CcEEEEee-cCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEec
Q 017553 234 FIASVHSNYVDCNRWL--GDFILSKS-VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN 310 (369)
Q Consensus 234 ~~~~~~~~~v~~~~~~--~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~ 310 (369)
.........+.++ |++|+++. ..+.|.+|++..... ....+..+.........++++|+++ .++++..
T Consensus 241 ---~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g-----~l~~~~~~~~~G~~Pr~~~~s~~g~-~l~Va~~ 311 (345)
T PF10282_consen 241 ---FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATG-----TLTLVQTVPTGGKFPRHFAFSPDGR-YLYVANQ 311 (345)
T ss_dssp ---SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTT-----TEEEEEEEEESSSSEEEEEE-TTSS-EEEEEET
T ss_pred ---ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCC-----ceEEEEEEeCCCCCccEEEEeCCCC-EEEEEec
Confidence 0011244556665 77766654 467899999943211 2234455554445578899999997 2444455
Q ss_pred CCCeEEEEEccC
Q 017553 311 REGKIFVWELQS 322 (369)
Q Consensus 311 ~dg~i~i~d~~~ 322 (369)
.++.|.+|++..
T Consensus 312 ~s~~v~vf~~d~ 323 (345)
T PF10282_consen 312 DSNTVSVFDIDP 323 (345)
T ss_dssp TTTEEEEEEEET
T ss_pred CCCeEEEEEEeC
Confidence 778999998753
No 255
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.46 E-value=2.6e-11 Score=100.88 Aligned_cols=190 Identities=16% Similarity=0.139 Sum_probs=146.5
Q ss_pred CCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEe------cC-------------CCceEEEEEeeCCcEE
Q 017553 140 KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDF------HP-------------SDIYRIASCGMDNTVK 200 (369)
Q Consensus 140 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~------~~-------------~~~~~l~~~~~d~~v~ 200 (369)
...++|....||.+++||...++....+.....-.+...+..| +| .+..+++-|...|.|.
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~ 83 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL 83 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence 5678999999999999999998887777643333444444444 22 2456788888899999
Q ss_pred EEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCc
Q 017553 201 IWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGT 278 (369)
Q Consensus 201 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 278 (369)
+|+...++.. ....-..|.+.|.++.+. -..|.+++.|..+..|+.....
T Consensus 84 ~ys~~~g~it---------------------~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~------- 135 (541)
T KOG4547|consen 84 LYSVAGGEIT---------------------AKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV------- 135 (541)
T ss_pred EEEecCCeEE---------------------EEEecCCCCCcceeeecccccCceEecCCceeEEEEecccce-------
Confidence 9999885421 122335789999999987 4589999999999999999876
Q ss_pred cceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCC-----CCEEE
Q 017553 279 ADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYD-----GSTIL 353 (369)
Q Consensus 279 ~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~ 353 (369)
.++.+......+.+++.+||+. .+++++ ++|.+||++++ +.+..++ +|.++|.++.|.-+ |.++.
T Consensus 136 --~~~~~~~~~~~~~sl~is~D~~--~l~~as--~~ik~~~~~~k--evv~~ft--gh~s~v~t~~f~~~~~g~~G~~vL 205 (541)
T KOG4547|consen 136 --IIRIWKEQKPLVSSLCISPDGK--ILLTAS--RQIKVLDIETK--EVVITFT--GHGSPVRTLSFTTLIDGIIGKYVL 205 (541)
T ss_pred --eeeeeccCCCccceEEEcCCCC--EEEecc--ceEEEEEccCc--eEEEEec--CCCcceEEEEEEEeccccccceee
Confidence 6777777778899999999986 777776 68999999998 5677777 99999999999877 65555
Q ss_pred E-eecCCeEEEEecC
Q 017553 354 S-CCEDGAIWRWDAI 367 (369)
Q Consensus 354 s-~~~dg~i~vw~~~ 367 (369)
+ ...+..+.+|-+.
T Consensus 206 ssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 206 SSAAAERGITVWVVE 220 (541)
T ss_pred eccccccceeEEEEE
Confidence 4 4455567888654
No 256
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=1.3e-11 Score=106.00 Aligned_cols=263 Identities=14% Similarity=0.154 Sum_probs=184.1
Q ss_pred eEEEEEeeccCCCccEEEEecCCcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecC--------C-CccEEEEeec
Q 017553 36 LYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNV--------D-GIPFLVAGGI 106 (369)
Q Consensus 36 v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------~-g~~~l~~~~~ 106 (369)
-.++.|+| +.++|.|+..-|.+-|..+-+.+..+. .|...|..+.|++-| . ...+|+++..
T Consensus 18 ~~A~Dw~~-----~GLiAygshslV~VVDs~s~q~iqsie-----~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~ 87 (1062)
T KOG1912|consen 18 RNAADWSP-----SGLIAYGSHSLVSVVDSRSLQLIQSIE-----LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADI 87 (1062)
T ss_pred ccccccCc-----cceEEEecCceEEEEehhhhhhhhccc-----cCccceeEEEeccCCCchhccCccccceeEEeccc
Confidence 56788998 789999998889999988888777777 577899999998543 1 2336788888
Q ss_pred CCeEEEEEcCCccccceeeccccceEEEEecCC--CC-ceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEec
Q 017553 107 NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPL--KP-SLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFH 183 (369)
Q Consensus 107 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~--~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 183 (369)
.|.|.+||...+..+..+..|.+++..++|-+. +. .+|++-....++.+|+..+|+...... .-.....|+.+.
T Consensus 88 ~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~---ys~~iLs~f~~D 164 (1062)
T KOG1912|consen 88 SGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD---YSHEILSCFRVD 164 (1062)
T ss_pred cCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccc---cCCcceeeeeeC
Confidence 999999999999989999999999999999763 22 567777777899999999999998876 344566779999
Q ss_pred CCCceEEEEEeeCCcEEEEEccCcee--eeeeeeeccCCCCCCCCceeecceeeeccCCCc-------eee--eeee--C
Q 017553 184 PSDIYRIASCGMDNTVKIWSMKEFWT--YVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY-------VDC--NRWL--G 250 (369)
Q Consensus 184 ~~~~~~l~~~~~d~~v~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------v~~--~~~~--~ 250 (369)
|.+.+.+..-+..|.+.+.+.-.... ...+.+.....-+.... .......-..+... ..| ++|+ -
T Consensus 165 Pfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~--lere~at~ns~ts~~~sa~fity~a~faf~p~~ 242 (1062)
T KOG1912|consen 165 PFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAH--LERETATGNSTTSTPASAYFITYCAQFAFSPHW 242 (1062)
T ss_pred CCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhh--hhhhhhccccccCCCcchhHHHHHHhhhcChhh
Confidence 98888888888889888877654211 11111111111000000 00000000000000 011 2233 2
Q ss_pred cEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccC
Q 017553 251 DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS 322 (369)
Q Consensus 251 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~ 322 (369)
+.++-......+.++|++-.. ++...+...+.+..+.+-|+++...|.+.-.||.+.+|-.+.
T Consensus 243 rn~lfi~~prellv~dle~~~---------~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 243 RNILFITFPRELLVFDLEYEC---------CLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred hceEEEEeccceEEEcchhhc---------eeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 233333566789999998655 667777777778889999999878999999999999997665
No 257
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.45 E-value=1.4e-10 Score=87.42 Aligned_cols=236 Identities=12% Similarity=0.051 Sum_probs=158.3
Q ss_pred EEEEeecCCeEEEEEcCCccc-cceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCC--c
Q 017553 100 FLVAGGINGIIRVIDVSNEKL-HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRN--E 176 (369)
Q Consensus 100 ~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--~ 176 (369)
+|+.|+..|...+|...+.+. .+....|...|+-+.=..+...-+..++.|.++++.++.-+..-..+ |.. .
T Consensus 86 ~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~-----h~~~~~ 160 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAV-----HNQNLT 160 (344)
T ss_pred EEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccccee-----eccccc
Confidence 799999999999999886654 33333444444333222223345677788999999988755433332 333 3
Q ss_pred EEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEE
Q 017553 177 VLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFIL 254 (369)
Q Consensus 177 v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~ 254 (369)
+.++++++ ++.++++.+....|..|.+......... .......+.-.+..|+ ...++
T Consensus 161 ~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~--------------------~~~a~t~D~gF~~S~s~~~~~FA 219 (344)
T KOG4532|consen 161 QNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIEN--------------------IYEAPTSDHGFYNSFSENDLQFA 219 (344)
T ss_pred eeeeEEcC-CCceEEEecCCCcceEEEeCCccceeee--------------------eEecccCCCceeeeeccCcceEE
Confidence 78899999 9999999999999999999874322211 1222333444566666 66899
Q ss_pred EeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEee--
Q 017553 255 SKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLS-- 332 (369)
Q Consensus 255 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-- 332 (369)
++.+||++.|||++....+. ...-..-+.|.+.+..+.|++-|...+|...-.-+.+.+.|+++.....+....
T Consensus 220 v~~Qdg~~~I~DVR~~~tpm----~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d 295 (344)
T KOG4532|consen 220 VVFQDGTCAIYDVRNMATPM----AEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDD 295 (344)
T ss_pred EEecCCcEEEEEecccccch----hhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcc
Confidence 99999999999999875321 112233445788999999999777667777777889999999998644333332
Q ss_pred -cCCCc-cceEEEEecCCCCEEEEeecCCeEEEEec
Q 017553 333 -HAQSK-SPIRQTAMSYDGSTILSCCEDGAIWRWDA 366 (369)
Q Consensus 333 -~~~~~-~~v~~~~~s~~~~~l~s~~~dg~i~vw~~ 366 (369)
...|. ..|..-.|+.++.-+.+.+++. +.=|++
T Consensus 296 ~~~~~~tq~ifgt~f~~~n~s~~v~~e~~-~ae~ni 330 (344)
T KOG4532|consen 296 VERKHNTQHIFGTNFNNENESNDVKNELQ-GAEYNI 330 (344)
T ss_pred ccccccccccccccccCCCcccccccchh-hheeec
Confidence 11222 3477888888877766666553 455554
No 258
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.45 E-value=1.5e-09 Score=88.55 Aligned_cols=147 Identities=19% Similarity=0.195 Sum_probs=114.6
Q ss_pred CccEEEEecCCcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCC-eEEEEEcCCccccceeec
Q 017553 48 YFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING-IIRVIDVSNEKLHKSFVG 126 (369)
Q Consensus 48 ~~~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~ 126 (369)
+|+++|..+.++..|.+.-.+-.+.. .+...|.-..+. .+++ -++.|..|| .+-|+|..+++ ++.+..
T Consensus 331 ~Gd~ia~VSRGkaFi~~~~~~~~iqv-------~~~~~VrY~r~~--~~~e-~~vigt~dgD~l~iyd~~~~e-~kr~e~ 399 (668)
T COG4946 331 NGDYIALVSRGKAFIMRPWDGYSIQV-------GKKGGVRYRRIQ--VDPE-GDVIGTNDGDKLGIYDKDGGE-VKRIEK 399 (668)
T ss_pred CCcEEEEEecCcEEEECCCCCeeEEc-------CCCCceEEEEEc--cCCc-ceEEeccCCceEEEEecCCce-EEEeeC
Confidence 48999999999977777544443332 355667777777 4555 688888888 89999987665 455556
Q ss_pred cccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCC----cEEEE
Q 017553 127 HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN----TVKIW 202 (369)
Q Consensus 127 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~----~v~i~ 202 (369)
.-+.|.++..+| +++.++.+.....+.+.|+.+|.....-+ ...+-|+.+.|+| ++++++-+--+| .|+++
T Consensus 400 ~lg~I~av~vs~-dGK~~vvaNdr~el~vididngnv~~idk---S~~~lItdf~~~~-nsr~iAYafP~gy~tq~Ikly 474 (668)
T COG4946 400 DLGNIEAVKVSP-DGKKVVVANDRFELWVIDIDNGNVRLIDK---SEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLY 474 (668)
T ss_pred CccceEEEEEcC-CCcEEEEEcCceEEEEEEecCCCeeEecc---cccceeEEEEEcC-CceeEEEecCcceeeeeEEEE
Confidence 678899999999 89999999999999999999998765544 4667899999999 999998776554 68999
Q ss_pred EccCceee
Q 017553 203 SMKEFWTY 210 (369)
Q Consensus 203 d~~~~~~~ 210 (369)
|+..++..
T Consensus 475 dm~~~Kiy 482 (668)
T COG4946 475 DMDGGKIY 482 (668)
T ss_pred ecCCCeEE
Confidence 99986543
No 259
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.43 E-value=1.2e-11 Score=96.25 Aligned_cols=223 Identities=15% Similarity=0.231 Sum_probs=161.5
Q ss_pred ccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEcc-CCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeC
Q 017553 118 EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ-TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD 196 (369)
Q Consensus 118 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 196 (369)
...+..++||.+.+++...-| ...-+++.+.|.++++|--+ .++.-..+.. ....+++++.+.+ ....|+.|-..
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~-~e~gv~~~s~drtvrv~lkrds~q~wpsI~~--~mP~~~~~~~y~~-e~~~L~vg~~n 89 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIP-KEEGVISVSEDRTVRVWLKRDSGQYWPSIYH--YMPSPCSAMEYVS-ESRRLYVGQDN 89 (404)
T ss_pred hhhhhhhcCchhhhhhheecc-CCCCeEEccccceeeeEEeccccccCchhhh--hCCCCceEeeeec-cceEEEEEEec
Confidence 345678889999999999988 77789999999999999643 4444444431 2456789999998 88889999999
Q ss_pred CcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCC
Q 017553 197 NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSP 274 (369)
Q Consensus 197 ~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~ 274 (369)
|++.-+.+...-. .....+....|...+..+-|+ .+++++.+.|..+.---.+.+....
T Consensus 90 gtvtefs~sedfn-------------------km~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg 150 (404)
T KOG1409|consen 90 GTVTEFALSEDFN-------------------KMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLG 150 (404)
T ss_pred ceEEEEEhhhhhh-------------------hcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCccc
Confidence 9999887765100 012334455677777777776 5566666666554322222111100
Q ss_pred --------------------------------CCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccC
Q 017553 275 --------------------------------GEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS 322 (369)
Q Consensus 275 --------------------------------~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~ 322 (369)
......++.++.+|...+.+++|.+..+ +|.+|..|..+.+||+-.
T Consensus 151 ~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~--~LfSg~~d~~vi~wdigg 228 (404)
T KOG1409|consen 151 GYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQR--LLFSGASDHSVIMWDIGG 228 (404)
T ss_pred ceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCc--EEEeccccCceEEEeccC
Confidence 0112345677888889999999999885 999999999999999987
Q ss_pred CCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 323 SPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 323 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
.+. ....+. +|...|..+...+--+.|.+++.||.|-+||++.
T Consensus 229 ~~g-~~~el~--gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 229 RKG-TAYELQ--GHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred Ccc-eeeeec--cchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 643 333444 8888999999988889999999999999999863
No 260
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=2.2e-10 Score=99.45 Aligned_cols=210 Identities=12% Similarity=0.094 Sum_probs=125.3
Q ss_pred eEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCC---CcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCC
Q 017553 109 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD---ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS 185 (369)
Q Consensus 109 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 185 (369)
.|.++|.+.+ ..+.+..+...+....|+| +++.|+..+.+ ..|.+||+.+++.... . ...+.+....|+|
T Consensus 180 ~l~~~d~~g~-~~~~l~~~~~~~~~p~wSp-DG~~la~~s~~~~~~~l~~~~l~~g~~~~l-~---~~~g~~~~~~~Sp- 252 (430)
T PRK00178 180 TLQRSDYDGA-RAVTLLQSREPILSPRWSP-DGKRIAYVSFEQKRPRIFVQNLDTGRREQI-T---NFEGLNGAPAWSP- 252 (430)
T ss_pred EEEEECCCCC-CceEEecCCCceeeeeECC-CCCEEEEEEcCCCCCEEEEEECCCCCEEEc-c---CCCCCcCCeEECC-
Confidence 4777787544 3455656777899999999 77777665543 3689999988875443 2 2334455789999
Q ss_pred CceEEE-EEeeCC--cEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeec-C
Q 017553 186 DIYRIA-SCGMDN--TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV-D 259 (369)
Q Consensus 186 ~~~~l~-~~~~d~--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~-d 259 (369)
+++.|+ +...++ .|++||+.++.. ..+..+........|+ ++.++..+. +
T Consensus 253 DG~~la~~~~~~g~~~Iy~~d~~~~~~------------------------~~lt~~~~~~~~~~~spDg~~i~f~s~~~ 308 (430)
T PRK00178 253 DGSKLAFVLSKDGNPEIYVMDLASRQL------------------------SRVTNHPAIDTEPFWGKDGRTLYFTSDRG 308 (430)
T ss_pred CCCEEEEEEccCCCceEEEEECCCCCe------------------------EEcccCCCCcCCeEECCCCCEEEEEECCC
Confidence 666554 555555 578888877321 1122233333445565 666655443 3
Q ss_pred C--eEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEec-CCC--eEEEEEccCCCceeEEEeecC
Q 017553 260 N--EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN-REG--KIFVWELQSSPPVLIARLSHA 334 (369)
Q Consensus 260 ~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~-~dg--~i~i~d~~~~~~~~~~~~~~~ 334 (369)
+ .|+++++.+++. ..+...........|+|+++ .++... .++ .|.++|+.+++... +...
T Consensus 309 g~~~iy~~d~~~g~~----------~~lt~~~~~~~~~~~Spdg~--~i~~~~~~~~~~~l~~~dl~tg~~~~---lt~~ 373 (430)
T PRK00178 309 GKPQIYKVNVNGGRA----------ERVTFVGNYNARPRLSADGK--TLVMVHRQDGNFHVAAQDLQRGSVRI---LTDT 373 (430)
T ss_pred CCceEEEEECCCCCE----------EEeecCCCCccceEECCCCC--EEEEEEccCCceEEEEEECCCCCEEE---ccCC
Confidence 3 577777766542 11111112234568999997 444433 333 58889998875432 2211
Q ss_pred CCccceEEEEecCCCCEEEEeecC-C--eEEEEecC
Q 017553 335 QSKSPIRQTAMSYDGSTILSCCED-G--AIWRWDAI 367 (369)
Q Consensus 335 ~~~~~v~~~~~s~~~~~l~s~~~d-g--~i~vw~~~ 367 (369)
. ......|+|||++|+..+.+ | .++++++.
T Consensus 374 ~---~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 374 S---LDESPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred C---CCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 1 12245899999988876643 2 36666553
No 261
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.41 E-value=1.1e-09 Score=93.54 Aligned_cols=255 Identities=11% Similarity=0.063 Sum_probs=146.8
Q ss_pred cEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccc
Q 017553 50 NVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHG 128 (369)
Q Consensus 50 ~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 128 (369)
..++.++.++ +..+|..+|+.+..... ...+.+... -.+. .++.++.+|.|+.||.++++.+.++....
T Consensus 106 ~~v~v~~~~g~l~ald~~tG~~~W~~~~------~~~~~~~p~---v~~~-~v~v~~~~g~l~a~d~~tG~~~W~~~~~~ 175 (377)
T TIGR03300 106 GLVFVGTEKGEVIALDAEDGKELWRAKL------SSEVLSPPL---VANG-LVVVRTNDGRLTALDAATGERLWTYSRVT 175 (377)
T ss_pred CEEEEEcCCCEEEEEECCCCcEeeeecc------CceeecCCE---EECC-EEEEECCCCeEEEEEcCCCceeeEEccCC
Confidence 4445555444 77778777776554331 111211111 1233 57777789999999999998877765432
Q ss_pred cceE-----EEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCC----c---E-EEEEecCCCceEEEEEee
Q 017553 129 DSIN-----EIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRN----E---V-LSVDFHPSDIYRIASCGM 195 (369)
Q Consensus 129 ~~v~-----~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~----~---v-~~~~~~~~~~~~l~~~~~ 195 (369)
..+. +.... + ..++.+..++.+..+|.++|+.+........... . + ....+ .+..++.++.
T Consensus 176 ~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~---~~~~vy~~~~ 249 (377)
T TIGR03300 176 PALTLRGSASPVIA--D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV---DGGQVYAVSY 249 (377)
T ss_pred CceeecCCCCCEEE--C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE---ECCEEEEEEc
Confidence 2111 11111 2 3677888889999999999987765431100000 0 0 01112 2345777788
Q ss_pred CCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeeeCcEEEEeecCCeEEEecCCCCCCCCC
Q 017553 196 DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPG 275 (369)
Q Consensus 196 d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 275 (369)
+|.++.||.++++..-.. .. .........++.++.++.+|.+..+|..+++.
T Consensus 250 ~g~l~a~d~~tG~~~W~~-----------------------~~--~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~--- 301 (377)
T TIGR03300 250 QGRVAALDLRSGRVLWKR-----------------------DA--SSYQGPAVDDNRLYVTDADGVVVALDRRSGSE--- 301 (377)
T ss_pred CCEEEEEECCCCcEEEee-----------------------cc--CCccCceEeCCEEEEECCCCeEEEEECCCCcE---
Confidence 999999999885432211 10 01122233477888888999999999988763
Q ss_pred CCccceeeeccC-CCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceE-EEEecCCCCEEE
Q 017553 276 EGTADILQKYPV-PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIR-QTAMSYDGSTIL 353 (369)
Q Consensus 276 ~~~~~~~~~~~~-~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~ 353 (369)
+-.... .......... .+. .+++++.+|.|+++|..+++ .+..+. .+...+. +..+. ++ .|+
T Consensus 302 ------~W~~~~~~~~~~ssp~i--~g~--~l~~~~~~G~l~~~d~~tG~--~~~~~~--~~~~~~~~sp~~~-~~-~l~ 365 (377)
T TIGR03300 302 ------LWKNDELKYRQLTAPAV--VGG--YLVVGDFEGYLHWLSREDGS--FVARLK--TDGSGIASPPVVV-GD-GLL 365 (377)
T ss_pred ------EEccccccCCccccCEE--ECC--EEEEEeCCCEEEEEECCCCC--EEEEEE--cCCCccccCCEEE-CC-EEE
Confidence 221111 1111111122 232 78889999999999999985 444444 2222222 22232 33 577
Q ss_pred EeecCCeEEEE
Q 017553 354 SCCEDGAIWRW 364 (369)
Q Consensus 354 s~~~dg~i~vw 364 (369)
.++.||.|+.|
T Consensus 366 v~~~dG~l~~~ 376 (377)
T TIGR03300 366 VQTRDGDLYAF 376 (377)
T ss_pred EEeCCceEEEe
Confidence 88899999876
No 262
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.40 E-value=4.7e-12 Score=117.81 Aligned_cols=193 Identities=12% Similarity=0.154 Sum_probs=148.7
Q ss_pred ccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCC
Q 017553 30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING 108 (369)
Q Consensus 30 ~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg 108 (369)
+.+-..|.++.=+| ...+.+||+.|+ +++|....+..+...... ....|..+.|+ .+|. .+..+..||
T Consensus 2205 k~~v~~v~r~~sHp----~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~----g~s~vtr~~f~--~qGn-k~~i~d~dg 2273 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHP----SDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA----GNSRVTRSRFN--HQGN-KFGIVDGDG 2273 (2439)
T ss_pred ecccCceeeecCCC----CCceEEecCCCceEEEEeccCCCeEEEeecc----Ccchhhhhhhc--ccCC-ceeeeccCC
Confidence 44556688888888 357888888888 999999988888877753 23667777776 7887 788888999
Q ss_pred eEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEe---CCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCC
Q 017553 109 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS---KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS 185 (369)
Q Consensus 109 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 185 (369)
.+.+|.+. .++....+.|+....++.|-. ..+++++ .++.+.+||.--......+.. .|.+.++++++.|
T Consensus 2274 ~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~--~H~~gaT~l~~~P- 2346 (2439)
T KOG1064|consen 2274 DLSLWQAS-PKPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVHT--CHDGGATVLAYAP- 2346 (2439)
T ss_pred ceeecccC-CcceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceeee--ecCCCceEEEEcC-
Confidence 99999976 677778888999999999975 5677764 468999999653322222222 6999999999999
Q ss_pred CceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeeeCcEEEEeecCCeEEEe
Q 017553 186 DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLW 265 (369)
Q Consensus 186 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~ 265 (369)
..++|++|+.+|.|++||++.. ...+.++. +. ...++++++..|.++||
T Consensus 2347 ~~qllisggr~G~v~l~D~rqr-----------------------ql~h~~~~-------~~-~~~~f~~~ss~g~ikIw 2395 (2439)
T KOG1064|consen 2347 KHQLLISGGRKGEVCLFDIRQR-----------------------QLRHTFQA-------LD-TREYFVTGSSEGNIKIW 2395 (2439)
T ss_pred cceEEEecCCcCcEEEeehHHH-----------------------HHHHHhhh-------hh-hhheeeccCcccceEEE
Confidence 9999999999999999999982 22222221 11 27799999999999999
Q ss_pred cCCCCC
Q 017553 266 EPKMKE 271 (369)
Q Consensus 266 d~~~~~ 271 (369)
++....
T Consensus 2396 ~~s~~~ 2401 (2439)
T KOG1064|consen 2396 RLSEFG 2401 (2439)
T ss_pred Eccccc
Confidence 998764
No 263
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.40 E-value=2.7e-09 Score=101.08 Aligned_cols=267 Identities=13% Similarity=0.125 Sum_probs=155.6
Q ss_pred EEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCC---------cccceeEEEeeecCCCccEEEEeec
Q 017553 37 YAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDED---------KEESFYTVSWACNVDGIPFLVAGGI 106 (369)
Q Consensus 37 ~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~g~~~l~~~~~ 106 (369)
..+++++. ++.++++-..++ |.+||. ++.....+....... .-..-..+++. +++..++++-..
T Consensus 571 ~gvavd~~---~g~lyVaDs~n~rI~v~d~-~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd--~~gn~LYVaDt~ 644 (1057)
T PLN02919 571 GKLAIDLL---NNRLFISDSNHNRIVVTDL-DGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYN--AKKNLLYVADTE 644 (1057)
T ss_pred ceEEEECC---CCeEEEEECCCCeEEEEeC-CCCEEEEEccCCCcCCCCCchhccccCCCcEEEEe--CCCCEEEEEeCC
Confidence 45778763 356666666555 999995 455444433211000 01123456665 776623444455
Q ss_pred CCeEEEEEcCCccccceeecc-----------------ccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeec
Q 017553 107 NGIIRVIDVSNEKLHKSFVGH-----------------GDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAG 169 (369)
Q Consensus 107 dg~i~vwd~~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 169 (369)
++.|+++|+.++. +.++.+- -.....++++|.++.++++.+.++.|++||..++.... +..
T Consensus 645 n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G 722 (1057)
T PLN02919 645 NHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSG 722 (1057)
T ss_pred CceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-Eec
Confidence 6789999987654 3333210 11346799999666777888888999999998765432 210
Q ss_pred c------CC------CCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeec
Q 017553 170 A------GG------HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS 237 (369)
Q Consensus 170 ~------~~------~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (369)
. .+ .-.....++++|+++.++++-+.++.|++||+.++..
T Consensus 723 ~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~---------------------------- 774 (1057)
T PLN02919 723 DGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGS---------------------------- 774 (1057)
T ss_pred CCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcE----------------------------
Confidence 0 00 1123567999994344667777788999999886311
Q ss_pred cCCCceeeeeeeCcEEEEeec----CCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCC
Q 017553 238 VHSNYVDCNRWLGDFILSKSV----DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG 313 (369)
Q Consensus 238 ~~~~~v~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg 313 (369)
.++.++. +....+.+..... ....+ .....+++++++. ++++-..++
T Consensus 775 --------------~~~~gg~~~~~~~l~~fG~~dG~g---------~~~~l----~~P~Gvavd~dG~--LYVADs~N~ 825 (1057)
T PLN02919 775 --------------RLLAGGDPTFSDNLFKFGDHDGVG---------SEVLL----QHPLGVLCAKDGQ--IYVADSYNH 825 (1057)
T ss_pred --------------EEEEecccccCcccccccCCCCch---------hhhhc----cCCceeeEeCCCc--EEEEECCCC
Confidence 0000000 0000111110000 00001 1234688999985 777788899
Q ss_pred eEEEEEccCCCceeEEEeec---------CCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 314 KIFVWELQSSPPVLIARLSH---------AQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 314 ~i~i~d~~~~~~~~~~~~~~---------~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
+|++||..++....+..... .+.-.....++++++|+++++-+.++.|++||+++
T Consensus 826 rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 826 KIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred EEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 99999998774222111000 01123577899999999999889999999999865
No 264
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.39 E-value=2.1e-09 Score=91.73 Aligned_cols=269 Identities=10% Similarity=0.013 Sum_probs=156.1
Q ss_pred ccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeecc
Q 017553 49 FNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGH 127 (369)
Q Consensus 49 ~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 127 (369)
+..+.+++.++ |.-+|..+|+.+-..+... .+.. .+..++. .++.++.+|.++.+|..+|+.+......
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~------~~~~---~p~v~~~-~v~v~~~~g~l~ald~~tG~~~W~~~~~ 134 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDE------RLSG---GVGADGG-LVFVGTEKGEVIALDAEDGKELWRAKLS 134 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCC------Cccc---ceEEcCC-EEEEEcCCCEEEEEECCCCcEeeeeccC
Confidence 45666666665 9999999998776554211 1111 1113344 6888889999999999999887665532
Q ss_pred ccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcE-----EEEEecCCCceEEEEEeeCCcEEEE
Q 017553 128 GDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEV-----LSVDFHPSDIYRIASCGMDNTVKIW 202 (369)
Q Consensus 128 ~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~l~~~~~d~~v~i~ 202 (369)
+.+.+.... .+..++.++.++.+..||.++|+.+..... ....+ .+.... + ..++.+..++.+..+
T Consensus 135 -~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~---~~~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~al 205 (377)
T TIGR03300 135 -SEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSR---VTPALTLRGSASPVIA--D-GGVLVGFAGGKLVAL 205 (377)
T ss_pred -ceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEcc---CCCceeecCCCCCEEE--C-CEEEEECCCCEEEEE
Confidence 222221111 234677778899999999999998887762 11111 111222 3 356777888999999
Q ss_pred EccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeeeCcEEEEeecCCeEEEecCCCCCCCCCCCcccee
Q 017553 203 SMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADIL 282 (369)
Q Consensus 203 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 282 (369)
|.++++...+......... ....... .........++.++.++.+|.++.||..+++. +
T Consensus 206 d~~tG~~~W~~~~~~~~g~---------~~~~~~~---~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~---------~ 264 (377)
T TIGR03300 206 DLQTGQPLWEQRVALPKGR---------TELERLV---DVDGDPVVDGGQVYAVSYQGRVAALDLRSGRV---------L 264 (377)
T ss_pred EccCCCEeeeeccccCCCC---------Cchhhhh---ccCCccEEECCEEEEEEcCCEEEEEECCCCcE---------E
Confidence 9988654332211100000 0000000 00011122367888888999999999988763 2
Q ss_pred eeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEE
Q 017553 283 QKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIW 362 (369)
Q Consensus 283 ~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~ 362 (369)
-..... ...... ..+. .+++++.+|.++.+|..+++.. ........ ....+... .+..|++++.+|.|+
T Consensus 265 W~~~~~--~~~~p~--~~~~--~vyv~~~~G~l~~~d~~tG~~~--W~~~~~~~-~~~ssp~i--~g~~l~~~~~~G~l~ 333 (377)
T TIGR03300 265 WKRDAS--SYQGPA--VDDN--RLYVTDADGVVVALDRRSGSEL--WKNDELKY-RQLTAPAV--VGGYLVVGDFEGYLH 333 (377)
T ss_pred EeeccC--CccCce--EeCC--EEEEECCCCeEEEEECCCCcEE--EccccccC-CccccCEE--ECCEEEEEeCCCEEE
Confidence 211111 111112 2333 6777889999999999988532 22210010 11222222 356888899999999
Q ss_pred EEecCC
Q 017553 363 RWDAIP 368 (369)
Q Consensus 363 vw~~~~ 368 (369)
++|..+
T Consensus 334 ~~d~~t 339 (377)
T TIGR03300 334 WLSRED 339 (377)
T ss_pred EEECCC
Confidence 999754
No 265
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.38 E-value=3.1e-12 Score=118.97 Aligned_cols=190 Identities=14% Similarity=0.325 Sum_probs=153.3
Q ss_pred cccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccC
Q 017553 127 HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206 (369)
Q Consensus 127 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~ 206 (369)
+-..|.++.-+| ...+.++|+.||.|++|....++.+..+... -...|+.+.|+. .|+.+..+..||.+.+|....
T Consensus 2207 ~v~~v~r~~sHp-~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~--g~s~vtr~~f~~-qGnk~~i~d~dg~l~l~q~~p 2282 (2439)
T KOG1064|consen 2207 PVENVRRMTSHP-SDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA--GNSRVTRSRFNH-QGNKFGIVDGDGDLSLWQASP 2282 (2439)
T ss_pred ccCceeeecCCC-CCceEEecCCCceEEEEeccCCCeEEEeecc--Ccchhhhhhhcc-cCCceeeeccCCceeecccCC
Confidence 446788888899 6778899999999999999999988888763 338899999998 788899999999999999874
Q ss_pred ceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeeeCcEEEEeec---CCeEEEecCCCCCCCCCCCccceee
Q 017553 207 FWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSV---DNEIVLWEPKMKEQSPGEGTADILQ 283 (369)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~ 283 (369)
.+......|......+.|-+..+++++. ++.+.+||..-... ...+.
T Consensus 2283 ------------------------k~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~------~s~v~ 2332 (2439)
T KOG1064|consen 2283 ------------------------KPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPM------NSLVH 2332 (2439)
T ss_pred ------------------------cceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcc------cceee
Confidence 4667778899999999998888887654 67799999754321 11333
Q ss_pred eccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEE
Q 017553 284 KYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWR 363 (369)
Q Consensus 284 ~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~v 363 (369)
..|...++++++.|..+ +|++|+.+|.|++||++..+ +...++ . +. ...++++|+..|.++|
T Consensus 2333 --~~H~~gaT~l~~~P~~q--llisggr~G~v~l~D~rqrq--l~h~~~-------~----~~-~~~~f~~~ss~g~ikI 2394 (2439)
T KOG1064|consen 2333 --TCHDGGATVLAYAPKHQ--LLISGGRKGEVCLFDIRQRQ--LRHTFQ-------A----LD-TREYFVTGSSEGNIKI 2394 (2439)
T ss_pred --eecCCCceEEEEcCcce--EEEecCCcCcEEEeehHHHH--HHHHhh-------h----hh-hhheeeccCcccceEE
Confidence 67889999999999986 99999999999999998763 333332 1 44 5679999999999999
Q ss_pred EecCC
Q 017553 364 WDAIP 368 (369)
Q Consensus 364 w~~~~ 368 (369)
|++..
T Consensus 2395 w~~s~ 2399 (2439)
T KOG1064|consen 2395 WRLSE 2399 (2439)
T ss_pred EEccc
Confidence 99863
No 266
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.38 E-value=3.3e-09 Score=81.26 Aligned_cols=227 Identities=15% Similarity=0.141 Sum_probs=134.8
Q ss_pred CccEEEEecCCcEEEEEecCCc--eeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceee
Q 017553 48 YFNVFATVGGNRVTVYQCLEGG--VIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFV 125 (369)
Q Consensus 48 ~~~~la~~~~~~v~iw~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 125 (369)
+|++||.-.+..|.|=..+++- .+...+. ..+....-+.++|+ ||+. +||.+...|+|+++|+... .+..+.
T Consensus 8 ~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqV--pkD~~PQWRkl~WS--pD~t-lLa~a~S~G~i~vfdl~g~-~lf~I~ 81 (282)
T PF15492_consen 8 DGKLLAILQDQCIEIRSAKDDFSSIIGKCQV--PKDPNPQWRKLAWS--PDCT-LLAYAESTGTIRVFDLMGS-ELFVIP 81 (282)
T ss_pred CCcEEEEEeccEEEEEeccCCchheeEEEec--CCCCCchheEEEEC--CCCc-EEEEEcCCCeEEEEecccc-eeEEcC
Confidence 6999999988887777755432 2333332 23445566779998 9999 9999999999999998643 333332
Q ss_pred c-------cccceEEEEecCCC-----CceEEEEeCCCcEEEEEccC-----CcEEEEeeccCCCCCcEEEEEecCCCce
Q 017553 126 G-------HGDSINEIRTQPLK-----PSLVVSASKDESVRLWNVQT-----GICILIFAGAGGHRNEVLSVDFHPSDIY 188 (369)
Q Consensus 126 ~-------~~~~v~~~~~~~~~-----~~~l~s~~~dg~i~vwd~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 188 (369)
. -..+|..|.|.+.. ...|+.-..+|.++-|-+.. .+....+.-...+...|.++.++| ..+
T Consensus 82 p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p-~h~ 160 (282)
T PF15492_consen 82 PAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP-KHR 160 (282)
T ss_pred cccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC-CCC
Confidence 1 23567778776532 23566677788888777532 233344432224577899999999 767
Q ss_pred EEEEEeeCCc-----------EEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeeeCcEEEEee
Q 017553 189 RIASCGMDNT-----------VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKS 257 (369)
Q Consensus 189 ~l~~~~~d~~-----------v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~ 257 (369)
+|+.||.... +..|.+-. ..+.......+..+.-....
T Consensus 161 LLlVgG~~~~~~~~s~a~~~GLtaWRiL~-------------------------------~~Pyyk~v~~~~~~~~~~~~ 209 (282)
T PF15492_consen 161 LLLVGGCEQNQDGMSKASSCGLTAWRILS-------------------------------DSPYYKQVTSSEDDITASSK 209 (282)
T ss_pred EEEEeccCCCCCccccccccCceEEEEcC-------------------------------CCCcEEEccccCcccccccc
Confidence 7777664322 22233222 11110000000011111111
Q ss_pred cCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCce
Q 017553 258 VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPV 326 (369)
Q Consensus 258 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 326 (369)
..+. |.+-+.+ ...........|..+..|||+. .|++...+|.|.+|++.+-+.+
T Consensus 210 ~~~~---~~~~~~~---------~fs~~~~~~d~i~kmSlSPdg~--~La~ih~sG~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 210 RRGL---LRIPSFK---------FFSRQGQEQDGIFKMSLSPDGS--LLACIHFSGSLSLWEIPSLRLQ 264 (282)
T ss_pred ccce---eecccee---------eeeccccCCCceEEEEECCCCC--EEEEEEcCCeEEEEecCcchhh
Confidence 1222 2221111 1111122356789999999997 9999999999999999887543
No 267
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=3.7e-10 Score=98.07 Aligned_cols=160 Identities=16% Similarity=0.074 Sum_probs=101.0
Q ss_pred cccCCcCeEEEEEeeccCCCccEEEEecCC---c-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEe
Q 017553 29 LQEGKRPLYAVVFNFIDSRYFNVFATVGGN---R-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG 104 (369)
Q Consensus 29 ~~~h~~~v~~~~~s~~~~~~~~~la~~~~~---~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~ 104 (369)
+..+...+...+|+| +|+.|+..+.+ . |.+|++.+++... +.. ..+......|+ |||+.++++.
T Consensus 194 l~~~~~~~~~p~wSp----DG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~-----~~g~~~~~~~S--pDG~~la~~~ 261 (430)
T PRK00178 194 LLQSREPILSPRWSP----DGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITN-----FEGLNGAPAWS--PDGSKLAFVL 261 (430)
T ss_pred EecCCCceeeeeECC----CCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccC-----CCCCcCCeEEC--CCCCEEEEEE
Confidence 445677899999999 68888766532 2 8999988776433 221 12233346666 9998444455
Q ss_pred ecCC--eEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEe-CCC--cEEEEEccCCcEEEEeeccCCCCCcEEE
Q 017553 105 GING--IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS-KDE--SVRLWNVQTGICILIFAGAGGHRNEVLS 179 (369)
Q Consensus 105 ~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg--~i~vwd~~~~~~~~~~~~~~~~~~~v~~ 179 (369)
..+| .|++||+.+++. ..+..+........|+| +++.|+..+ .++ .|.++|+.+++...... .......
T Consensus 262 ~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~----~~~~~~~ 335 (430)
T PRK00178 262 SKDGNPEIYVMDLASRQL-SRVTNHPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF----VGNYNAR 335 (430)
T ss_pred ccCCCceEEEEECCCCCe-EEcccCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeec----CCCCccc
Confidence 5555 688889887654 33444555567788999 666555444 344 57777887776443322 1223345
Q ss_pred EEecCCCceEEEEEee-CC--cEEEEEccCc
Q 017553 180 VDFHPSDIYRIASCGM-DN--TVKIWSMKEF 207 (369)
Q Consensus 180 ~~~~~~~~~~l~~~~~-d~--~v~i~d~~~~ 207 (369)
..|+| +++.++..+. ++ .|.++|+.++
T Consensus 336 ~~~Sp-dg~~i~~~~~~~~~~~l~~~dl~tg 365 (430)
T PRK00178 336 PRLSA-DGKTLVMVHRQDGNFHVAAQDLQRG 365 (430)
T ss_pred eEECC-CCCEEEEEEccCCceEEEEEECCCC
Confidence 78999 6666665554 33 4778888764
No 268
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=6.3e-10 Score=92.31 Aligned_cols=295 Identities=11% Similarity=0.081 Sum_probs=177.6
Q ss_pred ccceeeeeecccCCcCeEEEEEeeccCCCccEEEEecC------------CcEEEEEecCCceeEEEeeeccCCccccee
Q 017553 20 KREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGG------------NRVTVYQCLEGGVIAALQSYVDEDKEESFY 87 (369)
Q Consensus 20 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~------------~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~ 87 (369)
-..|...+.+ .|. .|.-+.||| +.++|+|-+. +.++|||+.+|...+.+..+..+.. .-.
T Consensus 238 G~~f~r~~RF-~Hp-~Vq~idfSP----~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~--~WP 309 (698)
T KOG2314|consen 238 GESFDRIQRF-YHP-GVQFIDFSP----NEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYL--KWP 309 (698)
T ss_pred CccHHHHHhc-cCC-CceeeecCC----ccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCcc--ccc
Confidence 3444444433 243 488899999 6899999762 2299999999998888876432221 122
Q ss_pred EEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeC-----CCcEEEEEccCCc
Q 017553 88 TVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASK-----DESVRLWNVQTGI 162 (369)
Q Consensus 88 ~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-----dg~i~vwd~~~~~ 162 (369)
-..|+ .|++ ++|.-..+ .|.||+..+-.++..-.-.-..|....|+| .+++||-=.. -..+.+..+.+++
T Consensus 310 ~frWS--~DdK-y~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP-~~~llAYwtpe~~~~parvtL~evPs~~ 384 (698)
T KOG2314|consen 310 IFRWS--HDDK-YFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSP-TSNLLAYWTPETNNIPARVTLMEVPSKR 384 (698)
T ss_pred eEEec--cCCc-eeEEeccc-eEEEEecCceeeecccccCCccccCcccCC-CcceEEEEcccccCCcceEEEEecCccc
Confidence 25676 8888 88877664 799999766444322222345788999999 7777764322 2456777777777
Q ss_pred EEEEeeccCCCCCcEEEEEecCCCceEEEEE----------eeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecc
Q 017553 163 CILIFAGAGGHRNEVLSVDFHPSDIYRIASC----------GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP 232 (369)
Q Consensus 163 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~----------~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (369)
.++... -+.-.=..+.|-. +|.+|+.- +.-..+-|+.++.. ..|
T Consensus 385 ~iRt~n---lfnVsDckLhWQk-~gdyLcvkvdR~tK~~~~g~f~n~eIfrireK----------------------dIp 438 (698)
T KOG2314|consen 385 EIRTKN---LFNVSDCKLHWQK-SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREK----------------------DIP 438 (698)
T ss_pred eeeecc---ceeeeccEEEecc-CCcEEEEEEEeeccccccceEeeEEEEEeecc----------------------CCC
Confidence 666544 2322223455655 55555532 12223555555552 112
Q ss_pred eeeeccCCCceeeeeee--CcEEEEeec---CCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEE
Q 017553 233 VFIASVHSNYVDCNRWL--GDFILSKSV---DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAA 307 (369)
Q Consensus 233 ~~~~~~~~~~v~~~~~~--~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~ 307 (369)
+.... -...|...+|. |+.+++-+. ..++.+|.+.+... ....+..+.. ...+.+-|+|.|+ +++
T Consensus 439 ve~ve-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~-----~~~lVk~~dk--~~~N~vfwsPkG~--fvv 508 (698)
T KOG2314|consen 439 VEVVE-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIK-----KPSLVKELDK--KFANTVFWSPKGR--FVV 508 (698)
T ss_pred ceeee-cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCC-----chhhhhhhcc--cccceEEEcCCCc--EEE
Confidence 22222 23456666675 665544332 35688888874221 2223444433 4567899999997 444
Q ss_pred E---ecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecC------CeEEEEecC
Q 017553 308 I---GNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCED------GAIWRWDAI 367 (369)
Q Consensus 308 ~---~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d------g~i~vw~~~ 367 (369)
. ++..|.+.++|..-...+..... .| ...+.+.|.|.|+|+++++.- .--++|+++
T Consensus 509 va~l~s~~g~l~F~D~~~a~~k~~~~~---eh-~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 509 VAALVSRRGDLEFYDTDYADLKDTASP---EH-FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred EEEecccccceEEEecchhhhhhccCc---cc-cccccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence 3 35688999999885332222222 33 356789999999999999853 335666654
No 269
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=3.4e-10 Score=98.02 Aligned_cols=158 Identities=15% Similarity=0.130 Sum_probs=96.3
Q ss_pred ccCCcCeEEEEEeeccCCCccEEEEecC-C-c--EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEee
Q 017553 30 QEGKRPLYAVVFNFIDSRYFNVFATVGG-N-R--VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG 105 (369)
Q Consensus 30 ~~h~~~v~~~~~s~~~~~~~~~la~~~~-~-~--v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~ 105 (369)
..+...+.+..|+| +|+.|+..+. + . |.+||+.+++... +... .......+|+ |||+.++++.+
T Consensus 214 ~~~~~~~~~p~wSP----DG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~-----~g~~~~~~wS--PDG~~La~~~~ 281 (448)
T PRK04792 214 LRSPEPLMSPAWSP----DGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSF-----PGINGAPRFS--PDGKKLALVLS 281 (448)
T ss_pred ecCCCcccCceECC----CCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCC-----CCCcCCeeEC--CCCCEEEEEEe
Confidence 34556788999999 6888876543 2 2 8889987765432 2211 1222346666 99994555566
Q ss_pred cCCe--EEEEEcCCccccceeeccccceEEEEecCCCCceEEEEe-CCC--cEEEEEccCCcEEEEeeccCCCCCcEEEE
Q 017553 106 INGI--IRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS-KDE--SVRLWNVQTGICILIFAGAGGHRNEVLSV 180 (369)
Q Consensus 106 ~dg~--i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg--~i~vwd~~~~~~~~~~~~~~~~~~~v~~~ 180 (369)
.+|. |+++|+.+++. ..+..+.......+|+| +++.|+..+ .++ .|.++|+.+++...... ........
T Consensus 282 ~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~----~g~~~~~~ 355 (448)
T PRK04792 282 KDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKVSRLTF----EGEQNLGG 355 (448)
T ss_pred CCCCeEEEEEECCCCCe-EECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEEec----CCCCCcCe
Confidence 6665 77788877654 34444555667889999 666655444 344 46666777776443221 22223456
Q ss_pred EecCCCceEEEEEee-CCc--EEEEEccC
Q 017553 181 DFHPSDIYRIASCGM-DNT--VKIWSMKE 206 (369)
Q Consensus 181 ~~~~~~~~~l~~~~~-d~~--v~i~d~~~ 206 (369)
+|+| +++.++..+. ++. |.++|+.+
T Consensus 356 ~~Sp-DG~~l~~~~~~~g~~~I~~~dl~~ 383 (448)
T PRK04792 356 SITP-DGRSMIMVNRTNGKFNIARQDLET 383 (448)
T ss_pred eECC-CCCEEEEEEecCCceEEEEEECCC
Confidence 8999 6666655544 443 45566665
No 270
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=6.7e-10 Score=96.18 Aligned_cols=215 Identities=14% Similarity=0.061 Sum_probs=118.1
Q ss_pred cccceeEEEeeecCCCccEEEEee-cCC--eEEEEEcCCccccceeeccccceEEEEecCCCCceEE-EEeCCCc--EEE
Q 017553 82 KEESFYTVSWACNVDGIPFLVAGG-ING--IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVV-SASKDES--VRL 155 (369)
Q Consensus 82 ~~~~v~~~~~~~~~~g~~~l~~~~-~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~dg~--i~v 155 (369)
....+....|+ |||+ .|+..+ .++ .|++||+.+++.. .+....+.....+|+| +++.|+ +.+.+|. |.+
T Consensus 216 ~~~~~~~p~wS--PDG~-~La~~s~~~g~~~L~~~dl~tg~~~-~lt~~~g~~~~~~wSP-DG~~La~~~~~~g~~~Iy~ 290 (448)
T PRK04792 216 SPEPLMSPAWS--PDGR-KLAYVSFENRKAEIFVQDIYTQVRE-KVTSFPGINGAPRFSP-DGKKLALVLSKDGQPEIYV 290 (448)
T ss_pred CCCcccCceEC--CCCC-EEEEEEecCCCcEEEEEECCCCCeE-EecCCCCCcCCeeECC-CCCEEEEEEeCCCCeEEEE
Confidence 34566677787 9999 555443 333 5888998877542 2222223345789999 666554 5666675 777
Q ss_pred EEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEe-eCCc--EEEEEccCceeeeeeeeeccCCCCCCCCceeecc
Q 017553 156 WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG-MDNT--VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP 232 (369)
Q Consensus 156 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~--v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (369)
+|+.+++... +. .+.......+|+| +++.++..+ .++. |.++|+.+++.
T Consensus 291 ~dl~tg~~~~-lt---~~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~----------------------- 342 (448)
T PRK04792 291 VDIATKALTR-IT---RHRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKV----------------------- 342 (448)
T ss_pred EECCCCCeEE-Cc---cCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCE-----------------------
Confidence 8888776443 33 3555567789999 666555443 3444 55556655321
Q ss_pred eeeeccCCCceeeeeee--CcEEEEeec-CC--eEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEE
Q 017553 233 VFIASVHSNYVDCNRWL--GDFILSKSV-DN--EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAA 307 (369)
Q Consensus 233 ~~~~~~~~~~v~~~~~~--~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~ 307 (369)
..+...........|+ |++++..+. ++ .|.++|+.+++. ..+... .......|+|+++. +++
T Consensus 343 -~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~----------~~lt~~-~~d~~ps~spdG~~-I~~ 409 (448)
T PRK04792 343 -SRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM----------QVLTST-RLDESPSVAPNGTM-VIY 409 (448)
T ss_pred -EEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe----------EEccCC-CCCCCceECCCCCE-EEE
Confidence 0111111112223444 667666544 34 355677766542 111111 11123479999972 334
Q ss_pred EecCCCe--EEEEEccCCCceeEEEeecCCCccceEEEEecC
Q 017553 308 IGNREGK--IFVWELQSSPPVLIARLSHAQSKSPIRQTAMSY 347 (369)
Q Consensus 308 ~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 347 (369)
+...+|. +++++.... ....+. .+.+.+...+|+|
T Consensus 410 ~~~~~g~~~l~~~~~~G~---~~~~l~--~~~g~~~~p~Wsp 446 (448)
T PRK04792 410 STTYQGKQVLAAVSIDGR---FKARLP--AGQGEVKSPAWSP 446 (448)
T ss_pred EEecCCceEEEEEECCCC---ceEECc--CCCCCcCCCccCC
Confidence 4444443 677776443 233343 3335567778887
No 271
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.35 E-value=1.6e-08 Score=82.84 Aligned_cols=277 Identities=12% Similarity=-0.020 Sum_probs=151.6
Q ss_pred ccceeeeeecccCCcCeEEEEEeeccCCCccEEEEecC-----------CcEEEEEecCCceeEEEeeeccCCcccceeE
Q 017553 20 KREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGG-----------NRVTVYQCLEGGVIAALQSYVDEDKEESFYT 88 (369)
Q Consensus 20 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~-----------~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~ 88 (369)
....+.+.++..-..+-- + +|| +++.|+.+.. |.|.+||..+.+.+..+.....+........
T Consensus 34 ~~~~~v~g~i~~G~~P~~-~-~sp----Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~ 107 (352)
T TIGR02658 34 GEAGRVLGMTDGGFLPNP-V-VAS----DGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYP 107 (352)
T ss_pred CCCCEEEEEEEccCCCce-e-ECC----CCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCcc
Confidence 344566666653333332 4 889 5777776665 3399999999999988875322111112222
Q ss_pred EEeeecCCCccEEEEee-c-CCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEE
Q 017553 89 VSWACNVDGIPFLVAGG-I-NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILI 166 (369)
Q Consensus 89 ~~~~~~~~g~~~l~~~~-~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 166 (369)
..+.++|||+ +|++.. . +..|.+.|+.+++.+.++.- .+...-+..++ +..+ .-+.||......+.+......
T Consensus 108 ~~~~ls~dgk-~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-p~~~~vy~t~e-~~~~--~~~~Dg~~~~v~~d~~g~~~~ 182 (352)
T TIGR02658 108 WMTSLTPDNK-TLLFYQFSPSPAVGVVDLEGKAFVRMMDV-PDCYHIFPTAN-DTFF--MHCRDGSLAKVGYGTKGNPKI 182 (352)
T ss_pred ceEEECCCCC-EEEEecCCCCCEEEEEECCCCcEEEEEeC-CCCcEEEEecC-CccE--EEeecCceEEEEecCCCceEE
Confidence 3455559999 777655 3 78999999999998888774 22223333332 2222 223455544443332111111
Q ss_pred eeccCCCC--CcEEEE-EecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCce
Q 017553 167 FAGAGGHR--NEVLSV-DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV 243 (369)
Q Consensus 167 ~~~~~~~~--~~v~~~-~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 243 (369)
-...-.+. .++..- .|.+.++..+..... |+|.+.|+................ ........+...
T Consensus 183 ~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~-----------~~~~~~wrP~g~ 250 (352)
T TIGR02658 183 KPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTE-----------AEKADGWRPGGW 250 (352)
T ss_pred eeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccc-----------cccccccCCCcc
Confidence 10000011 111000 344435565555554 999999976632211111110000 000001233333
Q ss_pred eeeeee--CcEEEEee----------cCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecC
Q 017553 244 DCNRWL--GDFILSKS----------VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR 311 (369)
Q Consensus 244 ~~~~~~--~~~l~~~~----------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~ 311 (369)
.-++++ ++.+++.. ..+.|.++|..+.+ .+..+.. ...+..++++||++..++++...
T Consensus 251 q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k---------vi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~ 320 (352)
T TIGR02658 251 QQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK---------RLRKIEL-GHEIDSINVSQDAKPLLYALSTG 320 (352)
T ss_pred eeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe---------EEEEEeC-CCceeeEEECCCCCeEEEEeCCC
Confidence 335555 66666532 12579999998887 4555544 35788999999997434445557
Q ss_pred CCeEEEEEccCCCceeEEEe
Q 017553 312 EGKIFVWELQSSPPVLIARL 331 (369)
Q Consensus 312 dg~i~i~d~~~~~~~~~~~~ 331 (369)
++.|.++|..++ +.+..+
T Consensus 321 s~~VsViD~~t~--k~i~~i 338 (352)
T TIGR02658 321 DKTLYIFDAETG--KELSSV 338 (352)
T ss_pred CCcEEEEECcCC--eEEeee
Confidence 888999999998 445555
No 272
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.35 E-value=9.3e-10 Score=90.34 Aligned_cols=281 Identities=14% Similarity=0.092 Sum_probs=178.2
Q ss_pred cccCCcCeEEEEEeeccCCCccEEEEecCCcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCC
Q 017553 29 LQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING 108 (369)
Q Consensus 29 ~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg 108 (369)
+..-.-++..+.||| .|.+|++....+|.+|.-.....+..+. ...|+.+.|+ |.++ +|.+-+..+
T Consensus 28 ~~~~~~p~~~~~~SP----~G~~l~~~~~~~V~~~~g~~~~~l~~~~-------~~~V~~~~fS--P~~k-YL~tw~~~p 93 (561)
T COG5354 28 FESENWPVAYVSESP----LGTYLFSEHAAGVECWGGPSKAKLVRFR-------HPDVKYLDFS--PNEK-YLVTWSREP 93 (561)
T ss_pred ccccCcchhheeecC----cchheehhhccceEEccccchhheeeee-------cCCceecccC--cccc-eeeeeccCC
Confidence 333567899999999 6999999988889999976655444433 2356667777 9998 888865433
Q ss_pred ---------------eEEEEEcCCccccceeeccccc--eE-EEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeecc
Q 017553 109 ---------------IIRVIDVSNEKLHKSFVGHGDS--IN-EIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGA 170 (369)
Q Consensus 109 ---------------~i~vwd~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 170 (369)
.+.+||..++..+..+.....+ .+ -+.|+. +..+++-- ....++|+++...-....+..
T Consensus 94 i~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~-~D~y~ARv-v~~sl~i~e~t~n~~~~p~~~- 170 (561)
T COG5354 94 IIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSI-DDKYVARV-VGSSLYIHEITDNIEEHPFKN- 170 (561)
T ss_pred ccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeee-cchhhhhh-ccCeEEEEecCCccccCchhh-
Confidence 4999999999999888876655 55 678887 55555543 235789999732222222221
Q ss_pred CCCCCcEEEEEecCC-CceEEEE-----EeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCcee
Q 017553 171 GGHRNEVLSVDFHPS-DIYRIAS-----CGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD 244 (369)
Q Consensus 171 ~~~~~~v~~~~~~~~-~~~~l~~-----~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 244 (369)
-....|....|+|. ++..|+. .+..+.+++|.+..........+- ...-.
T Consensus 171 -lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lf-----------------------k~~~~ 226 (561)
T COG5354 171 -LRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLF-----------------------KVSGV 226 (561)
T ss_pred -ccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeE-----------------------eeccc
Confidence 12356788889983 2223332 355678888888753322222111 00111
Q ss_pred eeeee--CcEEEEee-----------cCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecC
Q 017553 245 CNRWL--GDFILSKS-----------VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR 311 (369)
Q Consensus 245 ~~~~~--~~~l~~~~-----------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~ 311 (369)
.+.|. |++++.-- ....++++++..... .+. ....++|...+|.|.++..-+++|-.
T Consensus 227 qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i--------~V~--~~~~~pVhdf~W~p~S~~F~vi~g~~ 296 (561)
T COG5354 227 QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI--------PVE--KDLKDPVHDFTWEPLSSRFAVISGYM 296 (561)
T ss_pred EEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc--------cee--ccccccceeeeecccCCceeEEeccc
Confidence 22232 44333211 134678888774431 111 13357899999999998666677788
Q ss_pred CCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecC---CeEEEEecC
Q 017553 312 EGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCED---GAIWRWDAI 367 (369)
Q Consensus 312 dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---g~i~vw~~~ 367 (369)
+-.+.++|++.. ....++ .+.=+.+.|+|.+++++.++-| |.|-+|+..
T Consensus 297 pa~~s~~~lr~N---l~~~~P----e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~ 348 (561)
T COG5354 297 PASVSVFDLRGN---LRFYFP----EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPA 348 (561)
T ss_pred ccceeecccccc---eEEecC----CcccccccccCcccEEEEecCCccccceEEeccC
Confidence 999999999886 222222 2345567889999998887754 457787754
No 273
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.34 E-value=2.6e-11 Score=90.83 Aligned_cols=207 Identities=15% Similarity=0.184 Sum_probs=121.3
Q ss_pred ccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEee-----cCCeEEEEEcCCccccc
Q 017553 49 FNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG-----INGIIRVIDVSNEKLHK 122 (369)
Q Consensus 49 ~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~-----~dg~i~vwd~~~~~~~~ 122 (369)
++.+++++.|+ +.+++.+....+ .......+.+ -.+.+.. ..+. ++.++. .-+..+.|+++..+...
T Consensus 101 ~t~V~~~~~dg~~~v~s~~~~~~~---~~~i~~~~~~-~as~~~~--~~~~-~i~s~~~g~~n~~d~~~a~~~~p~~t~~ 173 (319)
T KOG4714|consen 101 DNRVCIGYADGSLAVFSTDKDLAL---MSRIPSIHSG-SASRKIC--RHGN-SILSGGCGNWNAQDNFYANTLDPIKTLI 173 (319)
T ss_pred CCceEecCCCceEEEEechHHHhh---hhhccccccc-cccccee--eccc-EEecCCcceEeeccceeeeccccccccc
Confidence 67899999999 888886542211 1100001111 1112222 3344 343332 12344556654333221
Q ss_pred eeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEE
Q 017553 123 SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIW 202 (369)
Q Consensus 123 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~ 202 (369)
.-+.-...|.+++-+|...+++++|+.||.+-+||.+.......+. ..|+.++..+.|+|.++..|++++.||.+..|
T Consensus 174 ~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l--~ahk~~i~eV~FHpk~p~~Lft~sedGslw~w 251 (319)
T KOG4714|consen 174 PSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLL--KAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHW 251 (319)
T ss_pred ccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHH--HHhhhhhhheeccCCCchheeEecCCCcEEEE
Confidence 1111234599999999878889999999999999999874433322 27999999999999999999999999999999
Q ss_pred EccCceeeeeeeeeccCCCCCCCCceeeccee---eeccCCCceeeeeeeCcEEEEeecCCeEEEec
Q 017553 203 SMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF---IASVHSNYVDCNRWLGDFILSKSVDNEIVLWE 266 (369)
Q Consensus 203 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d 266 (369)
|..+.-... ...-.....-.........+. .+......|.++...|..+++|+.-+.|++++
T Consensus 252 das~~~l~i--~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 252 DASTTFLSI--SNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred cCCCceEEe--cCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence 988511110 000000111111111111111 12223334555555599999999988888875
No 274
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.32 E-value=2.6e-11 Score=100.53 Aligned_cols=290 Identities=10% Similarity=0.065 Sum_probs=178.5
Q ss_pred ecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCc-eeEE-EeeeccCCcccceeEEEeeecCCCccEEEEe
Q 017553 28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG-VIAA-LQSYVDEDKEESFYTVSWACNVDGIPFLVAG 104 (369)
Q Consensus 28 ~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~-~~~~-~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~ 104 (369)
.+.||+..|.+++--. +.+-+++++.|+ |++|.++... .+.+ .-.+....|+.+|..+.|- .+.+ +++++
T Consensus 730 nf~GH~~~iRai~Aid----NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL--~~lr-~i~Sc 802 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAID----NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFL--ADLR-SIASC 802 (1034)
T ss_pred cccCcHHHhHHHHhcc----cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeee--eccc-eeeec
Confidence 4679999999887554 468899999999 9999987422 2221 1123334788999999987 5555 55544
Q ss_pred ecCCeEEEEEcCCccccceeec--cccceEEEEecCC-CCceEEEE-eCCCcEEEEEccCCcEEEEeecc--CCCCCcEE
Q 017553 105 GINGIIRVIDVSNEKLHKSFVG--HGDSINEIRTQPL-KPSLVVSA-SKDESVRLWNVQTGICILIFAGA--GGHRNEVL 178 (369)
Q Consensus 105 ~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~-~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~--~~~~~~v~ 178 (369)
||.|++||.--++++..+.. ..+.+..+...|. +..++++| +...+|+++|.+.++....++.. .+.+..+.
T Consensus 803 --D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R 880 (1034)
T KOG4190|consen 803 --DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTR 880 (1034)
T ss_pred --cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchhee
Confidence 78899999888877654431 2233344444342 34444444 78899999999998877776642 34556789
Q ss_pred EEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeee-eeeCcEEEEee
Q 017553 179 SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCN-RWLGDFILSKS 257 (369)
Q Consensus 179 ~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~l~~~~ 257 (369)
+++..+ .|+.++.+-.+|.|.+.|.++++..- ....-......+ +.+.+.++...
T Consensus 881 ~iaVa~-~GN~lAa~LSnGci~~LDaR~G~vIN-----------------------swrpmecdllqlaapsdq~L~~sa 936 (1034)
T KOG4190|consen 881 AIAVAD-KGNKLAAALSNGCIAILDARNGKVIN-----------------------SWRPMECDLLQLAAPSDQALAQSA 936 (1034)
T ss_pred EEEecc-CcchhhHHhcCCcEEEEecCCCceec-----------------------cCCcccchhhhhcCchhHHHHhhc
Confidence 999998 89999999999999999999954211 000000000111 11245666666
Q ss_pred cCCeEEE-ecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCc--eeEEEeecC
Q 017553 258 VDNEIVL-WEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP--VLIARLSHA 334 (369)
Q Consensus 258 ~d~~i~i-~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~ 334 (369)
.|..+.+ |....+.. ....+.+..+...+ ..-|. -|++....+.+.+|--..... ..+.++...
T Consensus 937 ldHslaVnWhaldgim---------h~q~kpppepahfl--qsvgp--SLV~a~~Gn~lgVYad~a~~ha~stitKiR~d 1003 (1034)
T KOG4190|consen 937 LDHSLAVNWHALDGIM---------HLQDKPPPEPAHFL--QSVGP--SLVTAQNGNILGVYADSAELHAESTITKIRPD 1003 (1034)
T ss_pred ccceeEeeehhcCCee---------eeccCCCCcchhhh--hccCc--eeEEeccCcEEEEEecchhhhhhhhhcccccc
Confidence 7777777 76554431 11111111111111 11122 566666667788875322110 112233333
Q ss_pred CCccceEEEEecCCCCEEEEeecCCeEEE
Q 017553 335 QSKSPIRQTAMSYDGSTILSCCEDGAIWR 363 (369)
Q Consensus 335 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~v 363 (369)
...+..++++--|-..-+..|...|.|.+
T Consensus 1004 ~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1004 EFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred ccCCccceeeeccccchhhccCCCCceee
Confidence 44577888888887777777888888875
No 275
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=2.8e-09 Score=91.61 Aligned_cols=221 Identities=14% Similarity=0.073 Sum_probs=122.1
Q ss_pred ceeEEEeeecCCCcc--EEEEeecC--CeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEe-CCC----cEEE
Q 017553 85 SFYTVSWACNVDGIP--FLVAGGIN--GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS-KDE----SVRL 155 (369)
Q Consensus 85 ~v~~~~~~~~~~g~~--~l~~~~~d--g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg----~i~v 155 (369)
....-.|+ |||+. ++++...+ ..|.+.++.+++.. .+....+.....+|+| +++.|+..+ .+| .+.+
T Consensus 186 ~~~sP~wS--PDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~~~g~~~~p~wSP-DG~~Laf~s~~~g~~di~~~~ 261 (428)
T PRK01029 186 LSITPTWM--HIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILALQGNQLMPTFSP-RKKLLAFISDRYGNPDLFIQS 261 (428)
T ss_pred CcccceEc--cCCCceEEEEEEccCCCceEEEEECCCCCce-EeecCCCCccceEECC-CCCEEEEEECCCCCcceeEEE
Confidence 34445677 99874 22344444 35888888776533 3333344456789999 776666544 223 3444
Q ss_pred EEccCC---cEEEEeeccCCCCCcEEEEEecCCCceEEEEEe-eCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeec
Q 017553 156 WNVQTG---ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG-MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQF 231 (369)
Q Consensus 156 wd~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (369)
|++..+ +...... .........+|+| +++.|+..+ .+|...+|.+..... ..
T Consensus 262 ~~~~~g~~g~~~~lt~---~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~~~~~~--------------------g~ 317 (428)
T PRK01029 262 FSLETGAIGKPRRLLN---EAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYIMQIDPE--------------------GQ 317 (428)
T ss_pred eecccCCCCcceEeec---CCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECccc--------------------cc
Confidence 776653 3333322 2223446789999 776655544 566555554432000 00
Q ss_pred ceeeeccCCCceeeeeee--CcEEEEeecC---CeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEE
Q 017553 232 PVFIASVHSNYVDCNRWL--GDFILSKSVD---NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAA 306 (369)
Q Consensus 232 ~~~~~~~~~~~v~~~~~~--~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l 306 (369)
....+..+...+....|+ |+.|+..+.+ ..|.+||+.+++. ..+......+....|+||++. ++
T Consensus 318 ~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~----------~~Lt~~~~~~~~p~wSpDG~~-L~ 386 (428)
T PRK01029 318 SPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD----------YQLTTSPENKESPSWAIDSLH-LV 386 (428)
T ss_pred ceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe----------EEccCCCCCccceEECCCCCE-EE
Confidence 112222233344556665 7777765543 3699999987752 222222234567899999972 33
Q ss_pred EEec--CCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCC
Q 017553 307 AIGN--REGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDG 349 (369)
Q Consensus 307 ~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 349 (369)
+++. ....|+++|+.+++...+.. ..+.+...+|+|-.
T Consensus 387 f~~~~~g~~~L~~vdl~~g~~~~Lt~-----~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 387 YSAGNSNESELYLISLITKKTRKIVI-----GSGEKRFPSWGAFP 426 (428)
T ss_pred EEECCCCCceEEEEECCCCCEEEeec-----CCCcccCceecCCC
Confidence 3333 24568889998875433322 22456677888754
No 276
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.28 E-value=1.2e-10 Score=92.69 Aligned_cols=158 Identities=15% Similarity=0.236 Sum_probs=107.9
Q ss_pred EEEEEeeccCCCccEEEEecCCc-EEEEEecCCce-eEEEeeeccCCcccceeEEEeeecCCCccEEEEe---ecCCeEE
Q 017553 37 YAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGV-IAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG---GINGIIR 111 (369)
Q Consensus 37 ~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~---~~dg~i~ 111 (369)
..+.++| .+++||.+..+. ..++++..... .+.+.... ....-+.+.+. .+.. ....+ +....+.
T Consensus 66 ~~~~~s~----~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~---v~~~~~ai~~~--~~~~-sv~v~dkagD~~~~d 135 (390)
T KOG3914|consen 66 ALVLTSD----SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC---VPKRPTAISFI--REDT-SVLVADKAGDVYSFD 135 (390)
T ss_pred cccccCC----CceEEEEEeCCCceEEEEEecCCCcceeeeEee---cccCcceeeee--eccc-eEEEEeecCCceeee
Confidence 3444555 688999887776 66777665443 22222221 11222233333 3333 33333 3445566
Q ss_pred EEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEE
Q 017553 112 VIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIA 191 (369)
Q Consensus 112 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 191 (369)
+|....+. ...+-+|-..++.++|+| |+++|+++..|..|++-....-..+..+.. ||+.-|..++.-+ +..|+
T Consensus 136 i~s~~~~~-~~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~Iesfcl--GH~eFVS~isl~~--~~~Ll 209 (390)
T KOG3914|consen 136 ILSADSGR-CEPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESFCL--GHKEFVSTISLTD--NYLLL 209 (390)
T ss_pred eecccccC-cchhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhhcc--ccHhheeeeeecc--Cceee
Confidence 66655533 345558999999999999 889999999999999988876555555543 7999999999985 56699
Q ss_pred EEeeCCcEEEEEccCceee
Q 017553 192 SCGMDNTVKIWSMKEFWTY 210 (369)
Q Consensus 192 ~~~~d~~v~i~d~~~~~~~ 210 (369)
++|.|++|++||+++++..
T Consensus 210 S~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 210 SGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred ecCCCCcEEEEecccCCcc
Confidence 9999999999999997654
No 277
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.27 E-value=2.8e-08 Score=92.59 Aligned_cols=288 Identities=14% Similarity=0.132 Sum_probs=174.0
Q ss_pred CCcCeEEEEEeeccCCCccEEEEecCCc-EEEE----EecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeec
Q 017553 32 GKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVY----QCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI 106 (369)
Q Consensus 32 h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~ 106 (369)
..+.|.++.|-+ +..-++.+..+| |.+. +..+. .+.... .-+..|.+++|+ ||+. +|+..+.
T Consensus 74 ~~~~ivs~~yl~----d~~~l~~~~~~Gdi~~~~~~~~~~~~-~~E~VG-----~vd~GI~a~~WS--PD~E-lla~vT~ 140 (928)
T PF04762_consen 74 PNDKIVSFQYLA----DSESLCIALASGDIILVREDPDPDED-EIEIVG-----SVDSGILAASWS--PDEE-LLALVTG 140 (928)
T ss_pred CCCcEEEEEecc----CCCcEEEEECCceEEEEEccCCCCCc-eeEEEE-----EEcCcEEEEEEC--CCcC-EEEEEeC
Confidence 346799999998 355555555555 6666 32222 222222 346789999999 9999 8888888
Q ss_pred CCeEEEEEcC---------------C--------ccccceeec------------------------cccceEEEEecCC
Q 017553 107 NGIIRVIDVS---------------N--------EKLHKSFVG------------------------HGDSINEIRTQPL 139 (369)
Q Consensus 107 dg~i~vwd~~---------------~--------~~~~~~~~~------------------------~~~~v~~~~~~~~ 139 (369)
++++.+.+-. . |+.-..|+| +...-..|+|-.
T Consensus 141 ~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRG- 219 (928)
T PF04762_consen 141 EGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRG- 219 (928)
T ss_pred CCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECC-
Confidence 8888776420 0 111111111 222445788998
Q ss_pred CCceEEEEeC---C---CcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEee---CCcEEEEEccCceee
Q 017553 140 KPSLVVSASK---D---ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM---DNTVKIWSMKEFWTY 210 (369)
Q Consensus 140 ~~~~l~s~~~---d---g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---d~~v~i~d~~~~~~~ 210 (369)
|+.++|+.+. . ..+|||+-+ |....... .-.+--.+++|.| .|+++++.-. ...|.+|.-.. ...
T Consensus 220 DG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE---~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFfErNG-Lrh 293 (928)
T PF04762_consen 220 DGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSE---PVDGLEGALSWRP-SGNLIASSQRLPDRHDVVFFERNG-LRH 293 (928)
T ss_pred CCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccc---cCCCccCCccCCC-CCCEEEEEEEcCCCcEEEEEecCC-cEe
Confidence 8999998764 2 478999865 65444333 2333345789999 8898888765 23566665443 111
Q ss_pred eeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCC
Q 017553 211 VEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP 288 (369)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 288 (369)
.+.. + ........|..+.|+ ++.|+....| .|.+|-..+.. .-..+.+...
T Consensus 294 geF~------------------l-~~~~~~~~v~~l~Wn~ds~iLAv~~~~-~vqLWt~~NYH-------WYLKqei~~~ 346 (928)
T PF04762_consen 294 GEFT------------------L-RFDPEEEKVIELAWNSDSEILAVWLED-RVQLWTRSNYH-------WYLKQEIRFS 346 (928)
T ss_pred eeEe------------------c-CCCCCCceeeEEEECCCCCEEEEEecC-CceEEEeeCCE-------EEEEEEEEcc
Confidence 1111 1 112345678899998 6677776544 49999987763 2223333322
Q ss_pred C-CCeeEEEEeecCCccEEEEecCCCeEEEEEcc----CC----------------CceeEEEeec-----------CCC
Q 017553 289 E-CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ----SS----------------PPVLIARLSH-----------AQS 336 (369)
Q Consensus 289 ~-~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~----~~----------------~~~~~~~~~~-----------~~~ 336 (369)
. ..+..+.|+|... ..|...+.+|.+..++.. .+ ....+..+.. -.-
T Consensus 347 ~~~~~~~~~Wdpe~p-~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~ 425 (928)
T PF04762_consen 347 SSESVNFVKWDPEKP-LRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELEL 425 (928)
T ss_pred CCCCCCceEECCCCC-CEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcC
Confidence 2 3344588998765 355555655666555432 11 1111111110 012
Q ss_pred ccceEEEEecCCCCEEEEeecCCeEEEEecC
Q 017553 337 KSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 337 ~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 367 (369)
..+|.+++|++++..+++-..||.|.+|...
T Consensus 426 ~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~ 456 (928)
T PF04762_consen 426 PSPVNDVAFSPSNSRFAVLTSDGSLSIYEWD 456 (928)
T ss_pred CCCcEEEEEeCCCCeEEEEECCCCEEEEEec
Confidence 3789999999999889999999999998843
No 278
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=3.4e-09 Score=88.09 Aligned_cols=232 Identities=17% Similarity=0.222 Sum_probs=146.7
Q ss_pred EEEEEeeccCCCccEEEEecCCcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEE-----eecCCeEE
Q 017553 37 YAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVA-----GGINGIIR 111 (369)
Q Consensus 37 ~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~-----~~~dg~i~ 111 (369)
++..|++ |..+.|--..+.+.+|+......... .-+...|....+++.|.-. .+++ ++.-+.++
T Consensus 129 W~~qfs~----dEsl~arlv~nev~f~~~~~f~~~~~------kl~~~~i~~f~lSpgp~~~-~vAvyvPe~kGaPa~vr 197 (566)
T KOG2315|consen 129 WVPQFSI----DESLAARLVSNEVQFYDLGSFKTIQH------KLSVSGITMLSLSPGPEPP-FVAVYVPEKKGAPASVR 197 (566)
T ss_pred ccccccc----chhhhhhhhcceEEEEecCCccceee------eeeccceeeEEecCCCCCc-eEEEEccCCCCCCcEEE
Confidence 6888998 34555555555699999766322211 1356677778887444333 4443 35567899
Q ss_pred EEEcCCccccceee---ccccceEEEEecCCCCceEEEEeC--C---------CcEEEEEccCCcEEEEeeccCCCCCcE
Q 017553 112 VIDVSNEKLHKSFV---GHGDSINEIRTQPLKPSLVVSASK--D---------ESVRLWNVQTGICILIFAGAGGHRNEV 177 (369)
Q Consensus 112 vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~--d---------g~i~vwd~~~~~~~~~~~~~~~~~~~v 177 (369)
||..........+. -....=..+.|++....+|+.++. | .++++.+++...+...+. ..++|
T Consensus 198 i~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~----k~GPV 273 (566)
T KOG2315|consen 198 IYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL----KEGPV 273 (566)
T ss_pred EeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC----CCCCc
Confidence 99876332211111 011223467888844445544432 2 468888887445555553 68999
Q ss_pred EEEEecCCCceEEEE--EeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEE
Q 017553 178 LSVDFHPSDIYRIAS--CGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFI 253 (369)
Q Consensus 178 ~~~~~~~~~~~~l~~--~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l 253 (369)
.++.|+| ++..|++ |-.-..+.|||++. .++.. ..+++=.++-|+ |+++
T Consensus 274 hdv~W~~-s~~EF~VvyGfMPAkvtifnlr~------------------------~~v~d--f~egpRN~~~fnp~g~ii 326 (566)
T KOG2315|consen 274 HDVTWSP-SGREFAVVYGFMPAKVTIFNLRG------------------------KPVFD--FPEGPRNTAFFNPHGNII 326 (566)
T ss_pred eEEEECC-CCCEEEEEEecccceEEEEcCCC------------------------CEeEe--CCCCCccceEECCCCCEE
Confidence 9999999 6644444 34456899999987 22332 234455667776 8888
Q ss_pred EEeecC---CeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEec------CCCeEEEEEccCC
Q 017553 254 LSKSVD---NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN------REGKIFVWELQSS 323 (369)
Q Consensus 254 ~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~------~dg~i~i~d~~~~ 323 (369)
+.++.+ |.|.+||..+.+ .+..+.... .+-..|+|||+ ++++++ .|+.++||+....
T Consensus 327 ~lAGFGNL~G~mEvwDv~n~K---------~i~~~~a~~--tt~~eW~PdGe--~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 327 LLAGFGNLPGDMEVWDVPNRK---------LIAKFKAAN--TTVFEWSPDGE--YFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred EEeecCCCCCceEEEeccchh---------hccccccCC--ceEEEEcCCCc--EEEEEeccccEEecCCeEEEEecCc
Confidence 887764 679999999866 455554433 35579999998 555544 3788999998764
No 279
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=8.5e-09 Score=85.79 Aligned_cols=276 Identities=11% Similarity=0.105 Sum_probs=166.5
Q ss_pred eEEEEEeeccCCCccEEEEecCCcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeec---------
Q 017553 36 LYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI--------- 106 (369)
Q Consensus 36 v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~--------- 106 (369)
=+-+.||| -|.+|+|--..||.+|--.. ...++.+. |. .|.-+.|+ |..+ +|++-+.
T Consensus 213 etyv~wSP----~GTYL~t~Hk~GI~lWGG~~---f~r~~RF~---Hp-~Vq~idfS--P~Ek-YLVT~s~~p~~~~~~d 278 (698)
T KOG2314|consen 213 ETYVRWSP----KGTYLVTFHKQGIALWGGES---FDRIQRFY---HP-GVQFIDFS--PNEK-YLVTYSPEPIIVEEDD 278 (698)
T ss_pred eeeEEecC----CceEEEEEeccceeeecCcc---HHHHHhcc---CC-CceeeecC--Cccc-eEEEecCCccccCccc
Confidence 35688999 69999999999999998433 33333332 22 44556666 8887 8887542
Q ss_pred --CCeEEEEEcCCccccceeeccc--cce-EEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEE
Q 017553 107 --NGIIRVIDVSNEKLHKSFVGHG--DSI-NEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVD 181 (369)
Q Consensus 107 --dg~i~vwd~~~~~~~~~~~~~~--~~v-~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~ 181 (369)
...++|||+.+|...+.+.... ..+ .-+.||. +..++|.-.. .+|.||+..+-.++..-. -.-..|....
T Consensus 279 ~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~-DdKy~Arm~~-~sisIyEtpsf~lld~Ks---lki~gIr~Fs 353 (698)
T KOG2314|consen 279 NEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSH-DDKYFARMTG-NSISIYETPSFMLLDKKS---LKISGIRDFS 353 (698)
T ss_pred CCCceEEEEEccccchhcceeccCCCccccceEEecc-CCceeEEecc-ceEEEEecCceeeecccc---cCCccccCcc
Confidence 2579999999999988887522 222 3467898 7888887666 578999977643332211 2445688899
Q ss_pred ecCCCceEEEEEeeC-----CcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEE
Q 017553 182 FHPSDIYRIASCGMD-----NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFIL 254 (369)
Q Consensus 182 ~~~~~~~~l~~~~~d-----~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~ 254 (369)
|+| .+++|+-=... ..+.+-.+.+. ..+.....++-.=..+.|. |++|+
T Consensus 354 wsP-~~~llAYwtpe~~~~parvtL~evPs~-----------------------~~iRt~nlfnVsDckLhWQk~gdyLc 409 (698)
T KOG2314|consen 354 WSP-TSNLLAYWTPETNNIPARVTLMEVPSK-----------------------REIRTKNLFNVSDCKLHWQKSGDYLC 409 (698)
T ss_pred cCC-CcceEEEEcccccCCcceEEEEecCcc-----------------------ceeeeccceeeeccEEEeccCCcEEE
Confidence 999 65555422110 12222222221 1111212222111223332 55555
Q ss_pred Ee----------ecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEec-CCCeEEEEEccC-
Q 017553 255 SK----------SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN-REGKIFVWELQS- 322 (369)
Q Consensus 255 ~~----------~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~-~dg~i~i~d~~~- 322 (369)
.- +.-..+.|+.++.... ++..... ...+...+|-|.|....+++|. ...++.+|.+++
T Consensus 410 vkvdR~tK~~~~g~f~n~eIfrireKdI--------pve~vel-ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~ 480 (698)
T KOG2314|consen 410 VKVDRHTKSKVKGQFSNLEIFRIREKDI--------PVEVVEL-KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETN 480 (698)
T ss_pred EEEEeeccccccceEeeEEEEEeeccCC--------Cceeeec-chheeeeeeccCCCeEEEEEccccccceeEEEeecC
Confidence 32 2233466777665543 2222222 3567888999999844444443 346789998874
Q ss_pred -CCceeEEEeecCCCccceEEEEecCCCCEEEEee---cCCeEEEEecC
Q 017553 323 -SPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCC---EDGAIWRWDAI 367 (369)
Q Consensus 323 -~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~---~dg~i~vw~~~ 367 (369)
.++.++..+. . ...+.+.|+|.|++++.+. ..|.+.++|+.
T Consensus 481 ~~~~~lVk~~d--k--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 481 IKKPSLVKELD--K--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTD 525 (698)
T ss_pred CCchhhhhhhc--c--cccceEEEcCCCcEEEEEEecccccceEEEecc
Confidence 3334444444 1 4577899999999988765 56788888875
No 280
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.22 E-value=8.8e-09 Score=77.91 Aligned_cols=242 Identities=12% Similarity=0.034 Sum_probs=146.5
Q ss_pred cEEEEecCCc-EEEEEecCCce-eEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeecc
Q 017553 50 NVFATVGGNR-VTVYQCLEGGV-IAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGH 127 (369)
Q Consensus 50 ~~la~~~~~~-v~iw~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 127 (369)
.+||.||..+ ..+|.+.+.+. ..... .+...|.-+.-. -+...-+..++.|.++++.+++-+.....+...
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd-----~snn~v~~~~r~--cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~ 157 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCD-----VSNNDVTLVKRY--CDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQ 157 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeec-----ccccchhhhhhh--cccccceeeccCCcceeEEEEecCcccceeecc
Confidence 4677776666 99999885543 22222 122222222211 112224677788899999988655433322211
Q ss_pred ccceEEEEecCCCCceEEEEeCCCcEEEEEccCC-cEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccC
Q 017553 128 GDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG-ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206 (369)
Q Consensus 128 ~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~ 206 (369)
.-.+.++++++ ++.++++.+....|..|.+... +.+..... ...++.=.+..|+. ....++++..||++.|||+|.
T Consensus 158 ~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~-a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~I~DVR~ 234 (344)
T KOG4532|consen 158 NLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYE-APTSDHGFYNSFSE-NDLQFAVVFQDGTCAIYDVRN 234 (344)
T ss_pred ccceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEe-cccCCCceeeeecc-CcceEEEEecCCcEEEEEecc
Confidence 12388999999 9999999999999999988643 22222111 13455567888997 788899999999999999998
Q ss_pred ceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee----CcEEEEeecCCeEEEecCCCCCCCCCCCcccee
Q 017553 207 FWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL----GDFILSKSVDNEIVLWEPKMKEQSPGEGTADIL 282 (369)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 282 (369)
..... .........|.+.+..+.|+ -++|+..-.-+.+.+.|+++..........+-
T Consensus 235 ~~tpm------------------~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d- 295 (344)
T KOG4532|consen 235 MATPM------------------AEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDD- 295 (344)
T ss_pred cccch------------------hhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcc-
Confidence 32211 11223345688999999998 34666667778899999998863211100000
Q ss_pred eeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCC
Q 017553 283 QKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 323 (369)
Q Consensus 283 ~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~ 323 (369)
...+.....+....|+.++.. +.+.+++ .+.-|++.+.
T Consensus 296 ~~~~~~tq~ifgt~f~~~n~s--~~v~~e~-~~ae~ni~sr 333 (344)
T KOG4532|consen 296 VERKHNTQHIFGTNFNNENES--NDVKNEL-QGAEYNILSR 333 (344)
T ss_pred ccccccccccccccccCCCcc--cccccch-hhheeecccc
Confidence 011111233666777777653 3333322 3445555544
No 281
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.22 E-value=5.8e-10 Score=88.82 Aligned_cols=151 Identities=18% Similarity=0.199 Sum_probs=103.5
Q ss_pred cCCCccEEEEeecCCeEEEEEcCCcccccee-e--ccccceEEEEecCCCCce--EEEEeCCCcEEEEEccCCcEEEEee
Q 017553 94 NVDGIPFLVAGGINGIIRVIDVSNEKLHKSF-V--GHGDSINEIRTQPLKPSL--VVSASKDESVRLWNVQTGICILIFA 168 (369)
Q Consensus 94 ~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~-~--~~~~~v~~~~~~~~~~~~--l~s~~~dg~i~vwd~~~~~~~~~~~ 168 (369)
+++++ ++|++..+....++++........+ . .-...-+++.|...+... .-.++....+.+|....+.+...+
T Consensus 71 s~~~~-llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~l- 148 (390)
T KOG3914|consen 71 SDSGR-LVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPIL- 148 (390)
T ss_pred CCCce-EEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchhh-
Confidence 36676 8888888888778887654431111 1 122233444444422222 223345556666666555544444
Q ss_pred ccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeeccee-eeccCCCceeeee
Q 017553 169 GAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF-IASVHSNYVDCNR 247 (369)
Q Consensus 169 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~ 247 (369)
+|-..+++++|+| ++++++++..|..|++-.... ...+. ...+|...|..++
T Consensus 149 ---GhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa-----------------------~f~IesfclGH~eFVS~is 201 (390)
T KOG3914|consen 149 ---GHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPA-----------------------TFVIESFCLGHKEFVSTIS 201 (390)
T ss_pred ---hhhhhhheeeecC-CCCEEEEecCCceEEEEecCc-----------------------ccchhhhccccHhheeeee
Confidence 7999999999999 889999999999999977665 11222 3456999999998
Q ss_pred ee-CcEEEEeecCCeEEEecCCCCCCC
Q 017553 248 WL-GDFILSKSVDNEIVLWEPKMKEQS 273 (369)
Q Consensus 248 ~~-~~~l~~~~~d~~i~i~d~~~~~~~ 273 (369)
.. +..|++++.|+++++||+.+++..
T Consensus 202 l~~~~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 202 LTDNYLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred eccCceeeecCCCCcEEEEecccCCcc
Confidence 87 667899999999999999999854
No 282
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.22 E-value=2.7e-07 Score=75.80 Aligned_cols=145 Identities=15% Similarity=0.072 Sum_probs=106.8
Q ss_pred ecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecC
Q 017553 182 FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVD 259 (369)
Q Consensus 182 ~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d 259 (369)
|++.++.+++..+. |+..+.+.-.+- ...-++...|.-..+. ++-++.|..|
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~-------------------------~iqv~~~~~VrY~r~~~~~e~~vigt~d 380 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGY-------------------------SIQVGKKGGVRYRRIQVDPEGDVIGTND 380 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCe-------------------------eEEcCCCCceEEEEEccCCcceEEeccC
Confidence 44456788887775 566665544411 1122345555555553 6688889999
Q ss_pred C-eEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCcc
Q 017553 260 N-EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKS 338 (369)
Q Consensus 260 ~-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 338 (369)
| .+-+||..+++ +..+...-+.|.++..+++|+ .++++.....|.+.|+.++....+.+ ...+
T Consensus 381 gD~l~iyd~~~~e----------~kr~e~~lg~I~av~vs~dGK--~~vvaNdr~el~vididngnv~~idk----S~~~ 444 (668)
T COG4946 381 GDKLGIYDKDGGE----------VKRIEKDLGNIEAVKVSPDGK--KVVVANDRFELWVIDIDNGNVRLIDK----SEYG 444 (668)
T ss_pred CceEEEEecCCce----------EEEeeCCccceEEEEEcCCCc--EEEEEcCceEEEEEEecCCCeeEecc----cccc
Confidence 9 89999999884 555556668899999999997 88889899999999999997655544 3346
Q ss_pred ceEEEEecCCCCEEEEeecCC----eEEEEecCC
Q 017553 339 PIRQTAMSYDGSTILSCCEDG----AIWRWDAIP 368 (369)
Q Consensus 339 ~v~~~~~s~~~~~l~s~~~dg----~i~vw~~~~ 368 (369)
-|+.+.|||+++++|-+--+| .|+++|+..
T Consensus 445 lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 445 LITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred eeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence 899999999999999887666 478888764
No 283
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.22 E-value=1.3e-08 Score=87.66 Aligned_cols=202 Identities=10% Similarity=0.091 Sum_probs=111.6
Q ss_pred cccCCcCeEEEEEeeccCCCccE--E-EEecCCc---EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEE
Q 017553 29 LQEGKRPLYAVVFNFIDSRYFNV--F-ATVGGNR---VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLV 102 (369)
Q Consensus 29 ~~~h~~~v~~~~~s~~~~~~~~~--l-a~~~~~~---v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~ 102 (369)
+......+..=+||| ||+. + .+...++ |.+.++..++...... ..+.....+|+ |||+.+++
T Consensus 180 lt~~~~~~~sP~wSP----DG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~------~~g~~~~p~wS--PDG~~Laf 247 (428)
T PRK01029 180 LTQEHSLSITPTWMH----IGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA------LQGNQLMPTFS--PRKKLLAF 247 (428)
T ss_pred cccCCCCcccceEcc----CCCceEEEEEEccCCCceEEEEECCCCCceEeec------CCCCccceEEC--CCCCEEEE
Confidence 333445567779999 5653 2 2343332 8888987765433322 12233345666 99984444
Q ss_pred EeecCC----eEEEEEcCCc---cccceeeccccceEEEEecCCCCceEEEEe-CCCcEEEEE--ccC-CcEEEEeeccC
Q 017553 103 AGGING----IIRVIDVSNE---KLHKSFVGHGDSINEIRTQPLKPSLVVSAS-KDESVRLWN--VQT-GICILIFAGAG 171 (369)
Q Consensus 103 ~~~~dg----~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~vwd--~~~-~~~~~~~~~~~ 171 (369)
+...+| .+..|++..+ +.......+.......+|+| +++.|+..+ .+|...+|. +.. +.....+.
T Consensus 248 ~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt--- 323 (428)
T PRK01029 248 ISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT--- 323 (428)
T ss_pred EECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECcccccceEEec---
Confidence 443333 3444676653 22222222223456789999 777666544 567655654 432 23334343
Q ss_pred CCCCcEEEEEecCCCceEEEEEeeC---CcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeee
Q 017553 172 GHRNEVLSVDFHPSDIYRIASCGMD---NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW 248 (369)
Q Consensus 172 ~~~~~v~~~~~~~~~~~~l~~~~~d---~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 248 (369)
.+...+....|+| +++.|+..+.+ ..|.+||+.+++. ..+......+....|
T Consensus 324 ~~~~~~~~p~wSP-DG~~Laf~~~~~g~~~I~v~dl~~g~~------------------------~~Lt~~~~~~~~p~w 378 (428)
T PRK01029 324 KKYRNSSCPAWSP-DGKKIAFCSVIKGVRQICVYDLATGRD------------------------YQLTTSPENKESPSW 378 (428)
T ss_pred cCCCCccceeECC-CCCEEEEEEcCCCCcEEEEEECCCCCe------------------------EEccCCCCCccceEE
Confidence 3445677889999 77766655443 3688999887431 111111223344566
Q ss_pred e--CcEEEEeec---CCeEEEecCCCCC
Q 017553 249 L--GDFILSKSV---DNEIVLWEPKMKE 271 (369)
Q Consensus 249 ~--~~~l~~~~~---d~~i~i~d~~~~~ 271 (369)
+ |+.|+.... ...|.++|+..++
T Consensus 379 SpDG~~L~f~~~~~g~~~L~~vdl~~g~ 406 (428)
T PRK01029 379 AIDSLHLVYSAGNSNESELYLISLITKK 406 (428)
T ss_pred CCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 5 666654332 3468888887664
No 284
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.21 E-value=4.8e-08 Score=80.56 Aligned_cols=274 Identities=11% Similarity=0.109 Sum_probs=171.2
Q ss_pred cCeEEEEEeeccCCCccEEEEecC----------------CcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCC
Q 017553 34 RPLYAVVFNFIDSRYFNVFATVGG----------------NRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDG 97 (369)
Q Consensus 34 ~~v~~~~~s~~~~~~~~~la~~~~----------------~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g 97 (369)
..|.-+.||| .+++|.+-+. +.+.+||+.+|..+..+.....+.. .-.-+.|+ -+.
T Consensus 72 ~~V~~~~fSP----~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~--~Wp~~k~s--~~D 143 (561)
T COG5354 72 PDVKYLDFSP----NEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYL--GWPVLKFS--IDD 143 (561)
T ss_pred CCceecccCc----ccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCccc--ccceeeee--ecc
Confidence 4689999999 6889888643 2378999999988877765432211 11146666 555
Q ss_pred ccEEEEeecCCeEEEEEcCCccc----cceeeccccceEEEEecCC-CCceEEE-----EeCCCcEEEEEccCCcEEEEe
Q 017553 98 IPFLVAGGINGIIRVIDVSNEKL----HKSFVGHGDSINEIRTQPL-KPSLVVS-----ASKDESVRLWNVQTGICILIF 167 (369)
Q Consensus 98 ~~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~-~~~~l~s-----~~~dg~i~vwd~~~~~~~~~~ 167 (369)
. +++-- ....++|+++ ++.. .+.++ ...|....|+|. +...|+. .+.++++++|.+..+..+..-
T Consensus 144 ~-y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk 218 (561)
T COG5354 144 K-YVARV-VGSSLYIHEI-TDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTK 218 (561)
T ss_pred h-hhhhh-ccCeEEEEec-CCccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeee
Confidence 5 44433 3457999997 3322 22222 356888999994 2333443 467889999999876665443
Q ss_pred eccCCCCCcEEEEEecCCCceEEEEEe-----------eCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeee
Q 017553 168 AGAGGHRNEVLSVDFHPSDIYRIASCG-----------MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA 236 (369)
Q Consensus 168 ~~~~~~~~~v~~~~~~~~~~~~l~~~~-----------~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (369)
.- ....=..+.|++ .+.+++.-- ....+++++++.. .+...
T Consensus 219 ~l---fk~~~~qLkW~~-~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~------------------------~i~V~ 270 (561)
T COG5354 219 NL---FKVSGVQLKWQV-LGKYLLVLVMTHTKSNKSYFGESNLYLLRITER------------------------SIPVE 270 (561)
T ss_pred ee---EeecccEEEEec-CCceEEEEEEEeeecccceeccceEEEEeeccc------------------------cccee
Confidence 21 122224577887 555444321 1245677777641 12222
Q ss_pred ccCCCceeeeeee--CcEE--EEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEec--
Q 017553 237 SVHSNYVDCNRWL--GDFI--LSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN-- 310 (369)
Q Consensus 237 ~~~~~~v~~~~~~--~~~l--~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~-- 310 (369)
....++|...+|. ++.+ ++|-.+..+.++|++..- ... .++..-+.+.|+|.++ +++.++
T Consensus 271 ~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl----------~~~--~Pe~~rNT~~fsp~~r--~il~agF~ 336 (561)
T COG5354 271 KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNL----------RFY--FPEQKRNTIFFSPHER--YILFAGFD 336 (561)
T ss_pred ccccccceeeeecccCCceeEEecccccceeecccccce----------EEe--cCCcccccccccCccc--EEEEecCC
Confidence 2557788899995 4444 444578889999998652 221 2233445678999997 555543
Q ss_pred -CCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEee------cCCeEEEEecC
Q 017553 311 -REGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCC------EDGAIWRWDAI 367 (369)
Q Consensus 311 -~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~------~dg~i~vw~~~ 367 (369)
..|.+.+||..... +....+. + ...+-+.|+||++++.+.. .|..|.|||+.
T Consensus 337 nl~gni~i~~~~~rf-~~~~~~~--~--~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~ 395 (561)
T COG5354 337 NLQGNIEIFDPAGRF-KVAGAFN--G--LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY 395 (561)
T ss_pred ccccceEEeccCCce-EEEEEee--c--CCceEeeccCCceEEEecCCCcccccCcceEEEEec
Confidence 45789999988763 3333444 2 2345678999999887764 47789999985
No 285
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.21 E-value=8.1e-10 Score=85.22 Aligned_cols=263 Identities=16% Similarity=0.191 Sum_probs=158.0
Q ss_pred CCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCc-----eeEEEeeeccC-------CcccceeEEEeeecCCCc
Q 017553 32 GKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG-----VIAALQSYVDE-------DKEESFYTVSWACNVDGI 98 (369)
Q Consensus 32 h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~-----~~~~~~~~~~~-------~~~~~v~~~~~~~~~~g~ 98 (369)
..+.|+++.|.. .|.+||+|..++ |.+|.-.... -...++++..+ .-++.|..+.|. .+.|+
T Consensus 25 ead~ItaVefd~----tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~-~~t~r 99 (460)
T COG5170 25 EADKITAVEFDE----TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWF-DDTGR 99 (460)
T ss_pred ccceeeEEEecc----ccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeee-cCCCc
Confidence 456799999988 589999999888 8888754322 11223333221 235678888886 34444
Q ss_pred cEEEEeecCCeEEEEEcCCcc-------------------cc-----------------------cee-eccccceEEEE
Q 017553 99 PFLVAGGINGIIRVIDVSNEK-------------------LH-----------------------KSF-VGHGDSINEIR 135 (369)
Q Consensus 99 ~~l~~~~~dg~i~vwd~~~~~-------------------~~-----------------------~~~-~~~~~~v~~~~ 135 (369)
..++..+.|.+|++|.+.... ++ +.. ..|.--|.++.
T Consensus 100 ~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS 179 (460)
T COG5170 100 NHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSIS 179 (460)
T ss_pred ceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeee
Confidence 467777789999999875420 00 000 23666788999
Q ss_pred ecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCC-----CcEEEEEecCCCceEEEEEeeCCcEEEEEccCceee
Q 017553 136 TQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR-----NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTY 210 (369)
Q Consensus 136 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~ 210 (369)
|+. +...++++ .|=.|.+|++.--.....+.....|. .-|++..|+|...+.+.-.+..|.|++-|+|....-
T Consensus 180 ~Ns-D~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alc 257 (460)
T COG5170 180 FNS-DKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALC 257 (460)
T ss_pred ecC-chheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhc
Confidence 998 66666664 46789999987543322222222343 358899999977788888888999999999962111
Q ss_pred eeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCC
Q 017553 211 VEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP 288 (369)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 288 (369)
......+.. ...+.....+..-...|..+.|+ |+++++- .--++++||.+..+. ++.+.+.|
T Consensus 258 dn~~klfe~-------~~D~v~~~ff~eivsSISD~kFs~ngryIlsR-dyltvkiwDvnm~k~--------pikTi~~h 321 (460)
T COG5170 258 DNSKKLFEL-------TIDGVDVDFFEEIVSSISDFKFSDNGRYILSR-DYLTVKIWDVNMAKN--------PIKTIPMH 321 (460)
T ss_pred cCchhhhhh-------ccCcccchhHHHHhhhhcceEEcCCCcEEEEe-ccceEEEEecccccC--------CceeechH
Confidence 000000000 00000111222234556777786 5566663 446899999998765 33333222
Q ss_pred C------------CC---eeEEEEeecCCccEEEEecCCCeEEEEE
Q 017553 289 E------------CD---IWFIKFSCDFHYNAAAIGNREGKIFVWE 319 (369)
Q Consensus 289 ~------------~~---i~~~~~s~~~~~~~l~~~~~dg~i~i~d 319 (369)
. .. -..+.||-+.+ .+++|+..+..-+|-
T Consensus 322 ~~l~~~l~d~YEnDaifdkFeisfSgd~~--~v~sgsy~NNfgiyp 365 (460)
T COG5170 322 CDLMDELNDVYENDAIFDKFEISFSGDDK--HVLSGSYSNNFGIYP 365 (460)
T ss_pred HHHHHHHHhhhhccceeeeEEEEecCCcc--cccccccccceeeec
Confidence 1 11 13456666654 677777666666665
No 286
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.20 E-value=6.6e-07 Score=71.07 Aligned_cols=284 Identities=14% Similarity=0.101 Sum_probs=165.5
Q ss_pred cCCcCeEEEEEeeccCCCccEEEEecCC---c-EEEEEecCC-ceeEEEeeeccCCcccceeEEEeeecCCCccEEEEee
Q 017553 31 EGKRPLYAVVFNFIDSRYFNVFATVGGN---R-VTVYQCLEG-GVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG 105 (369)
Q Consensus 31 ~h~~~v~~~~~s~~~~~~~~~la~~~~~---~-v~iw~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~ 105 (369)
.+.+.++=|+|+| +++.|.++..+ + |.-|.+... ..+..+...... ..+-..++++ ++|+ +|+++.
T Consensus 37 ~~~~nptyl~~~~----~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~--g~~p~yvsvd--~~g~-~vf~An 107 (346)
T COG2706 37 AELGNPTYLAVNP----DQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLP--GSPPCYVSVD--EDGR-FVFVAN 107 (346)
T ss_pred cccCCCceEEECC----CCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccC--CCCCeEEEEC--CCCC-EEEEEE
Confidence 5667788999999 57788877654 2 888887753 344444332221 1222446665 9999 776665
Q ss_pred -cCCeEEEEEcCC-ccccc--eeeccccc----------eEEEEecCCCCceEEEEeC-CCcEEEEEccCCcEEEEeecc
Q 017553 106 -INGIIRVIDVSN-EKLHK--SFVGHGDS----------INEIRTQPLKPSLVVSASK-DESVRLWNVQTGICILIFAGA 170 (369)
Q Consensus 106 -~dg~i~vwd~~~-~~~~~--~~~~~~~~----------v~~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~ 170 (369)
..|.|.++-+.+ |.+.. .+..|.+. +....+.| ++++|++..- --.|.+|++..|.....-...
T Consensus 108 Y~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~ 186 (346)
T COG2706 108 YHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAE 186 (346)
T ss_pred ccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecCCceEEEEEcccCccccccccc
Confidence 458899999865 43221 12235554 88899999 8888887753 237999999977654332211
Q ss_pred CCCCCcEEEEEecCCCceEEEEE-eeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee
Q 017553 171 GGHRNEVLSVDFHPSDIYRIASC-GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL 249 (369)
Q Consensus 171 ~~~~~~v~~~~~~~~~~~~l~~~-~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 249 (369)
.........|.|+| ++++.... -.+++|.+|.........+........+..+.. ......+..+
T Consensus 187 v~~G~GPRHi~FHp-n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g-------------~~~~aaIhis 252 (346)
T COG2706 187 VKPGAGPRHIVFHP-NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTG-------------TNWAAAIHIS 252 (346)
T ss_pred cCCCCCcceEEEcC-CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCC-------------CCceeEEEEC
Confidence 12445678899999 77666544 458899999998843333322222222221111 2223333333
Q ss_pred --CcEEEEeec-CCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEE-ecCCCeEEEEEccCCCc
Q 017553 250 --GDFILSKSV-DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAI-GNREGKIFVWELQSSPP 325 (369)
Q Consensus 250 --~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~-~~~dg~i~i~d~~~~~~ 325 (369)
|++|.++.. ...|-+|.+..... ....+.....+........|++.++ +|++ .-.+..|.+|.++....
T Consensus 253 ~dGrFLYasNRg~dsI~~f~V~~~~g-----~L~~~~~~~teg~~PR~F~i~~~g~--~Liaa~q~sd~i~vf~~d~~TG 325 (346)
T COG2706 253 PDGRFLYASNRGHDSIAVFSVDPDGG-----KLELVGITPTEGQFPRDFNINPSGR--FLIAANQKSDNITVFERDKETG 325 (346)
T ss_pred CCCCEEEEecCCCCeEEEEEEcCCCC-----EEEEEEEeccCCcCCccceeCCCCC--EEEEEccCCCcEEEEEEcCCCc
Confidence 777776544 33577776654321 1223344444444466788999987 5554 44556799998765543
Q ss_pred eeEEEeecCCCccceEEEEec
Q 017553 326 VLIARLSHAQSKSPIRQTAMS 346 (369)
Q Consensus 326 ~~~~~~~~~~~~~~v~~~~~s 346 (369)
.+..... ........||.|.
T Consensus 326 ~L~~~~~-~~~~p~Pvcv~f~ 345 (346)
T COG2706 326 RLTLLGR-YAVVPEPVCVKFL 345 (346)
T ss_pred eEEeccc-ccCCCCcEEEEEc
Confidence 3322221 1222345566664
No 287
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.20 E-value=8.3e-10 Score=94.54 Aligned_cols=241 Identities=14% Similarity=0.236 Sum_probs=157.1
Q ss_pred cccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCcc---------------ccceeeccccceEEEEecCCCCceEEE
Q 017553 82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK---------------LHKSFVGHGDSINEIRTQPLKPSLVVS 146 (369)
Q Consensus 82 ~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~~l~s 146 (369)
......+++|. .+.. ++++|+.||.+++..+.+.. .-+++.+|++.|.-+.|+. ..+.|-+
T Consensus 13 nnvkL~c~~WN--ke~g-yIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe-~~QKLTt 88 (1189)
T KOG2041|consen 13 NNVKLHCAEWN--KESG-YIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE-NNQKLTT 88 (1189)
T ss_pred CCceEEEEEEc--ccCC-eEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc-ccccccc
Confidence 34567788897 5555 99999999999999886532 2356789999999999998 7788999
Q ss_pred EeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCC
Q 017553 147 ASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPT 226 (369)
Q Consensus 147 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~ 226 (369)
...+|-|.+|-+-.|......-. ......|.+++|+. +|..++....||.|.+=.++....
T Consensus 89 SDt~GlIiVWmlykgsW~EEMiN-nRnKSvV~SmsWn~-dG~kIcIvYeDGavIVGsvdGNRI----------------- 149 (1189)
T KOG2041|consen 89 SDTSGLIIVWMLYKGSWCEEMIN-NRNKSVVVSMSWNL-DGTKICIVYEDGAVIVGSVDGNRI----------------- 149 (1189)
T ss_pred cCCCceEEEEeeecccHHHHHhh-CcCccEEEEEEEcC-CCcEEEEEEccCCEEEEeecccee-----------------
Confidence 99999999999987765433221 02456789999998 889999999999998877665211
Q ss_pred ceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCC-Cc-cceeeeccCCCCCeeEEEEe----
Q 017553 227 KYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGE-GT-ADILQKYPVPECDIWFIKFS---- 298 (369)
Q Consensus 227 ~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~-~~~~~~~~~~~~~i~~~~~s---- 298 (369)
............+.|+ .+.++.+-..|.+.+||....-..... .. ......+......+..+.|.
T Consensus 150 -------wgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~ 222 (1189)
T KOG2041|consen 150 -------WGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPY 222 (1189)
T ss_pred -------cchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCcc
Confidence 0000011112245555 345666667788999987543211000 00 00000111111223334443
Q ss_pred ----ecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCC
Q 017553 299 ----CDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDG 359 (369)
Q Consensus 299 ----~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 359 (369)
|+. ..|+++..+|.+.+..-.+.....+... + -.+....|+++|..||+++.+.
T Consensus 223 ~~v~pdr--P~lavcy~nGr~QiMR~eND~~Pvv~dt---g--m~~vgakWnh~G~vLAvcG~~~ 280 (1189)
T KOG2041|consen 223 QPVPPDR--PRLAVCYANGRMQIMRSENDPEPVVVDT---G--MKIVGAKWNHNGAVLAVCGNDS 280 (1189)
T ss_pred ccCCCCC--CEEEEEEcCceehhhhhcCCCCCeEEec---c--cEeecceecCCCcEEEEccCcc
Confidence 344 4899999999999887655432222211 1 5688999999999999998653
No 288
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.19 E-value=5.3e-07 Score=84.32 Aligned_cols=314 Identities=13% Similarity=0.135 Sum_probs=178.2
Q ss_pred CCcCeEEEEEeeccCCCccEEEEecC----C--c-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEe
Q 017553 32 GKRPLYAVVFNFIDSRYFNVFATVGG----N--R-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG 104 (369)
Q Consensus 32 h~~~v~~~~~s~~~~~~~~~la~~~~----~--~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~ 104 (369)
+.+.-..|+|-. ||++||+.+- + + ++||+ ++|.....-. ...+--.+++|. |.|. ++|+.
T Consensus 208 ~dd~~~~ISWRG----DG~yFAVss~~~~~~~~R~iRVy~-ReG~L~stSE-----~v~gLe~~l~Wr--PsG~-lIA~~ 274 (928)
T PF04762_consen 208 WDDGRVRISWRG----DGEYFAVSSVEPETGSRRVIRVYS-REGELQSTSE-----PVDGLEGALSWR--PSGN-LIASS 274 (928)
T ss_pred cCCCceEEEECC----CCcEEEEEEEEcCCCceeEEEEEC-CCceEEeccc-----cCCCccCCccCC--CCCC-EEEEE
Confidence 555667888988 7999998763 3 3 99999 4454322222 112222348888 9998 77776
Q ss_pred ec---CCeEEEEEcCCccccceee----ccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcE
Q 017553 105 GI---NGIIRVIDVSNEKLHKSFV----GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEV 177 (369)
Q Consensus 105 ~~---dg~i~vwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v 177 (369)
.. ...|.+|. ++|-....|. .....|..+.|++ ++.+|+..-.|. |.+|-..+..--.+..........+
T Consensus 275 q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~-ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~ 351 (928)
T PF04762_consen 275 QRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNS-DSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESV 351 (928)
T ss_pred EEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECC-CCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCC
Confidence 54 35677787 4554443333 3456899999999 899999877655 9999987765322221111233445
Q ss_pred EEEEecCCCceEEEEEeeCCcEEEEEccCceeee--------eeeeeccCCC---CCCCCceeecce--eeeccCCCcee
Q 017553 178 LSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYV--------EKSFTWTDLP---SKFPTKYVQFPV--FIASVHSNYVD 244 (369)
Q Consensus 178 ~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~--------~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~~v~ 244 (369)
..+.|+|.+...|...+.+|.+..+++.-..... .......+.. ..+.......|. ..+. -+..|.
T Consensus 352 ~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~ 430 (928)
T PF04762_consen 352 NFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVN 430 (928)
T ss_pred CceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCcE
Confidence 5699999778888888887887666554311000 0000000000 000001111111 1122 356788
Q ss_pred eeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCc-c-ce-------eeeccCCCCCeeEEEEeecCCccEEEEecC--
Q 017553 245 CNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGT-A-DI-------LQKYPVPECDIWFIKFSCDFHYNAAAIGNR-- 311 (369)
Q Consensus 245 ~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~-~~-------~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~-- 311 (369)
+++|+ +..+++-..||.+.+|............+ . .. ..........+..++|..+.. +++....
T Consensus 431 ~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 508 (928)
T PF04762_consen 431 DVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDT--LLVLSDSDS 508 (928)
T ss_pred EEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCE--EEEEEecCc
Confidence 99997 44588999999999998655432210000 0 00 011122234567788887764 3333333
Q ss_pred -CCeEEEEEccCCCc-eeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEec
Q 017553 312 -EGKIFVWELQSSPP-VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 366 (369)
Q Consensus 312 -dg~i~i~d~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~ 366 (369)
...+.++++...+. ....... .-...+..+...++...++.-..+|.+...+.
T Consensus 509 ~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~ 563 (928)
T PF04762_consen 509 NQSKIVLVDIDDSENSASVESST--EVDGVVLIISSSPDSGSLYIQTNDGKVFQLSS 563 (928)
T ss_pred ccceEEEEEeccCCCceeEEEEe--ccCceEEEEeeCCCCcEEEEEECCCEEEEeec
Confidence 46788888854422 2222222 22355666666666554666677888775544
No 289
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.18 E-value=1.7e-09 Score=81.28 Aligned_cols=143 Identities=12% Similarity=0.180 Sum_probs=95.0
Q ss_pred EEEEeecCCeEEEEEcCCccc-cceeec-cccceEEEEecCCCCceEEEEeC-----CCcEEEEEccCCcEEEEeeccCC
Q 017553 100 FLVAGGINGIIRVIDVSNEKL-HKSFVG-HGDSINEIRTQPLKPSLVVSASK-----DESVRLWNVQTGICILIFAGAGG 172 (369)
Q Consensus 100 ~l~~~~~dg~i~vwd~~~~~~-~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~-----dg~i~vwd~~~~~~~~~~~~~~~ 172 (369)
-++++..||.+.+++.+.... ...+.. |.+ -.+.+... .++.+.++.. -+..+.|+++..+.+.... .
T Consensus 103 ~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~~-~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~---~ 177 (319)
T KOG4714|consen 103 RVCIGYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKICR-HGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK---K 177 (319)
T ss_pred ceEecCCCceEEEEechHHHhhhhhccccccc-ccccceee-cccEEecCCcceEeeccceeeecccccccccccc---c
Confidence 599999999999999765211 112221 111 11222222 3344444322 2345566655433222222 2
Q ss_pred CCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee---
Q 017553 173 HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--- 249 (369)
Q Consensus 173 ~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--- 249 (369)
....|.+++-+|...+++++|+.||.+.+||.+.. ..|...+..|..++..+-|.
T Consensus 178 ~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~----------------------~~p~S~l~ahk~~i~eV~FHpk~ 235 (319)
T KOG4714|consen 178 ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV----------------------AMPVSLLKAHKAEIWEVHFHPKN 235 (319)
T ss_pred ccccchhhhCCcccccEEEEecCCCeEEEEEcccc----------------------cchHHHHHHhhhhhhheeccCCC
Confidence 33459999999966778888999999999999983 34566778899999999996
Q ss_pred CcEEEEeecCCeEEEecCCC
Q 017553 250 GDFILSKSVDNEIVLWEPKM 269 (369)
Q Consensus 250 ~~~l~~~~~d~~i~i~d~~~ 269 (369)
++.|++++.||.+-.||..+
T Consensus 236 p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 236 PEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred chheeEecCCCcEEEEcCCC
Confidence 77999999999999999775
No 290
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.17 E-value=1.4e-09 Score=95.49 Aligned_cols=184 Identities=13% Similarity=0.158 Sum_probs=138.1
Q ss_pred CCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccC
Q 017553 140 KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTD 219 (369)
Q Consensus 140 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~ 219 (369)
++..++-|+....+..+|+++.+..+... -....|.-++. +++.+.+|...|+|.+-|.++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~---v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s------------- 206 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTN---VSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNS------------- 206 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeee---ccCCceEEEEe---cCcEEEeecccceEEeecCCc-------------
Confidence 45667778888888999999888777665 23334655554 568899999999999999998
Q ss_pred CCCCCCCceeecceeeeccCCCceeeeeeeCcEEEEeec---------CCeEEEecCCCCCCCCCCCccceeeeccCCCC
Q 017553 220 LPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSV---------DNEIVLWEPKMKEQSPGEGTADILQKYPVPEC 290 (369)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 290 (369)
-..+..+..|.+.|..+...|+.|++++. |..|++||+++.+. +..++.+..
T Consensus 207 ----------~~~iht~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra---------l~PI~~~~~ 267 (1118)
T KOG1275|consen 207 ----------FETIHTFDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA---------LSPIQFPYG 267 (1118)
T ss_pred ----------CceeeeeeccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhc---------cCCcccccC
Confidence 45788999999999999999999999986 44589999998763 222222222
Q ss_pred CeeEEEEeecCCccEEEEecCCCeEEEEEccCCCc--eeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEe
Q 017553 291 DIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP--VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 365 (369)
Q Consensus 291 ~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~ 365 (369)
+ ..+.|.|.-. ..+++.+..|...+-|..+... .....+. .....+..+++|++++.||.|..+|.|.+|.
T Consensus 268 P-~flrf~Psl~-t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~--p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 268 P-QFLRFHPSLT-TRLAVTSQSGQFQFVDTATLSNPPAGVKMVN--PNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred c-hhhhhccccc-ceEEEEecccceeeccccccCCCccceeEEc--cCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 2 4567787765 4788888899999999433211 2222222 3445699999999999999999999999997
No 291
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.16 E-value=3e-07 Score=70.72 Aligned_cols=230 Identities=12% Similarity=0.173 Sum_probs=127.5
Q ss_pred CCCccEEEEeecCCeEEEEEcCCc--cccceeec---cccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeec
Q 017553 95 VDGIPFLVAGGINGIIRVIDVSNE--KLHKSFVG---HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAG 169 (369)
Q Consensus 95 ~~g~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~---~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 169 (369)
.+|+ +||. -.|..|.|-..++. ..+.+..- ..-.=.-++|+| |+.+||.+...|+|+++|+.. ..+..+..
T Consensus 7 ~~Gk-~lAi-~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g-~~lf~I~p 82 (282)
T PF15492_consen 7 SDGK-LLAI-LQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMG-SELFVIPP 82 (282)
T ss_pred CCCc-EEEE-EeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEeccc-ceeEEcCc
Confidence 7887 4444 45667777765443 12222222 223457899999 999999999999999999964 44444442
Q ss_pred cC----CCCCcEEEEEecCCC-----ceEEEEEeeCCcEEEEEccCc--eeeeeeeeeccCCCCCCCCceeecceeeecc
Q 017553 170 AG----GHRNEVLSVDFHPSD-----IYRIASCGMDNTVKIWSMKEF--WTYVEKSFTWTDLPSKFPTKYVQFPVFIASV 238 (369)
Q Consensus 170 ~~----~~~~~v~~~~~~~~~-----~~~l~~~~~d~~v~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (369)
.. .-...|..+.|.+.. ...|++-..+|.++-|-+..+ +...+ .........
T Consensus 83 ~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e-----------------~hsfsf~~~ 145 (282)
T PF15492_consen 83 AMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQE-----------------NHSFSFSSH 145 (282)
T ss_pred ccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCccee-----------------eEEEEeccc
Confidence 11 123456677775412 335677777888888776431 11000 111222234
Q ss_pred CCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCe--
Q 017553 239 HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGK-- 314 (369)
Q Consensus 239 ~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~-- 314 (369)
++..|.++.|+ .++|++|+.... ..+. -......+++-..-.+.++-..++...|+.
T Consensus 146 yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~-------------s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~ 206 (282)
T PF15492_consen 146 YPHGINSAVYHPKHRLLLVGGCEQN------QDGM-------------SKASSCGLTAWRILSDSPYYKQVTSSEDDITA 206 (282)
T ss_pred CCCceeEEEEcCCCCEEEEeccCCC------CCcc-------------ccccccCceEEEEcCCCCcEEEccccCccccc
Confidence 57889999998 345555554221 0000 001122233322222322212223332221
Q ss_pred ----EEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 315 ----IFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 315 ----i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
-.+|.+-+.+ .... .......|..|..||||++||+...+|.|.+|++.+
T Consensus 207 ~~~~~~~~~~~~~~--~fs~--~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPs 260 (282)
T PF15492_consen 207 SSKRRGLLRIPSFK--FFSR--QGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPS 260 (282)
T ss_pred cccccceeecccee--eeec--cccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCc
Confidence 1233333221 1111 113446899999999999999999999999999853
No 292
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.14 E-value=2.3e-10 Score=89.26 Aligned_cols=154 Identities=14% Similarity=0.228 Sum_probs=118.7
Q ss_pred EEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCC-----cE
Q 017553 89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG-----IC 163 (369)
Q Consensus 89 ~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-----~~ 163 (369)
++|+.+-.|- . ++.+.+..|-+-|++++-. +.|. ..+.|.++.|.. ..+++..|..+|.|..+|++.+ .+
T Consensus 217 CawSlni~gy-h-fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~~~ 291 (425)
T KOG2695|consen 217 CAWSLNIMGY-H-FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNGWC 291 (425)
T ss_pred hhhhhcccee-e-ecccccceeEEEEeecccc-cccc-cchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCCcc
Confidence 4677665664 3 5555667788889887743 3333 567799999998 7889999999999999999864 45
Q ss_pred EEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCce
Q 017553 164 ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV 243 (369)
Q Consensus 164 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 243 (369)
...+. |...|+++.....++.+|++.+.+|+|++||+|.-+ ....+....+|.+.-
T Consensus 292 a~rly----h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K--------------------~~~~V~qYeGHvN~~ 347 (425)
T KOG2695|consen 292 AQRLY----HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATK--------------------CKKSVMQYEGHVNLS 347 (425)
T ss_pred eEEEE----cCcchhhhhhhccccceEeeccCcCceeEeeehhhh--------------------cccceeeeecccccc
Confidence 66665 999999998775577889999999999999999822 123467777887765
Q ss_pred eeeeee----CcEEEEeecCCeEEEecCCCCC
Q 017553 244 DCNRWL----GDFILSKSVDNEIVLWEPKMKE 271 (369)
Q Consensus 244 ~~~~~~----~~~l~~~~~d~~i~i~d~~~~~ 271 (369)
.-+.+. ...+++++.|-..|||.++.+.
T Consensus 348 a~l~~~v~~eeg~I~s~GdDcytRiWsl~~gh 379 (425)
T KOG2695|consen 348 AYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGH 379 (425)
T ss_pred cccccccccccceEEEccCeeEEEEEecccCc
Confidence 555553 5588889999999999999887
No 293
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.14 E-value=3.9e-10 Score=96.74 Aligned_cols=256 Identities=13% Similarity=0.167 Sum_probs=162.4
Q ss_pred eEEEEEeeccCCCccEEEEecCCcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEc
Q 017553 36 LYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDV 115 (369)
Q Consensus 36 v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~ 115 (369)
|-.+.|+|-. .....+++.+...-.+|++......+.- +....|...|..+.|. |...-++++++.|-.+..||+
T Consensus 70 vad~qws~h~-a~~~wiVsts~qkaiiwnlA~ss~~aIe--f~lhghsraitd~n~~--~q~pdVlatcsvdt~vh~wd~ 144 (1081)
T KOG0309|consen 70 VADVQWSPHP-AKPYWIVSTSNQKAIIWNLAKSSSNAIE--FVLHGHSRAITDINFN--PQHPDVLATCSVDTYVHAWDM 144 (1081)
T ss_pred hcceecccCC-CCceeEEecCcchhhhhhhhcCCccceE--EEEecCccceeccccC--CCCCcceeeccccccceeeec
Confidence 7778898833 3345666666666889998754332211 1112688889888888 666658999999999999999
Q ss_pred CCcc-ccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCc-EEEEeeccCCCCCcEEEEEecCCCceEEEEE
Q 017553 116 SNEK-LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI-CILIFAGAGGHRNEVLSVDFHPSDIYRIASC 193 (369)
Q Consensus 116 ~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 193 (369)
++.. ++..+..-......++|+-.+++.+++ +....|++||.+.|. ++..++ +|...|+.++|+......+.++
T Consensus 145 rSp~~p~ys~~~w~s~asqVkwnyk~p~vlas-shg~~i~vwd~r~gs~pl~s~K---~~vs~vn~~~fnr~~~s~~~s~ 220 (1081)
T KOG0309|consen 145 RSPHRPFYSTSSWRSAASQVKWNYKDPNVLAS-SHGNDIFVWDLRKGSTPLCSLK---GHVSSVNSIDFNRFKYSEIMSS 220 (1081)
T ss_pred cCCCcceeeeecccccCceeeecccCcchhhh-ccCCceEEEeccCCCcceEEec---ccceeeehHHHhhhhhhhhccc
Confidence 8764 455555445567889999866666555 555789999998764 566677 7999999999986456678999
Q ss_pred eeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee----CcEEEEeecCCeEEEecCCC
Q 017553 194 GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL----GDFILSKSVDNEIVLWEPKM 269 (369)
Q Consensus 194 ~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~l~~~~~d~~i~i~d~~~ 269 (369)
+.|++|++||........+..+. ...+|..-.+- |-++.---.+..+.+++.++
T Consensus 221 ~~d~tvkfw~y~kSt~e~~~~vt----------------------t~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n 278 (1081)
T KOG0309|consen 221 SNDGTVKFWDYSKSTTESKRTVT----------------------TNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCEN 278 (1081)
T ss_pred CCCCceeeecccccccccceecc----------------------ccCcceeccccccCceeEeccccCCeeeeeccccc
Confidence 99999999999873322222111 01111111111 11111111122344444333
Q ss_pred CCCC-CCCCccceeeeccCCCCCeeEEEEee--------cCCccEEEEecCCCeEEEEEccC
Q 017553 270 KEQS-PGEGTADILQKYPVPECDIWFIKFSC--------DFHYNAAAIGNREGKIFVWELQS 322 (369)
Q Consensus 270 ~~~~-~~~~~~~~~~~~~~~~~~i~~~~~s~--------~~~~~~l~~~~~dg~i~i~d~~~ 322 (369)
.... .......++..+.+|...|....|-. +.+...|++=+.|..+++|.+.+
T Consensus 279 ~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 279 SDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred hhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 2211 11112337888888887665544432 33345799999999999998764
No 294
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.14 E-value=3.4e-07 Score=72.60 Aligned_cols=243 Identities=16% Similarity=0.118 Sum_probs=144.3
Q ss_pred eEEEEEeeccCCCccEEEEecCCc--EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEe-----ecCC
Q 017553 36 LYAVVFNFIDSRYFNVFATVGGNR--VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG-----GING 108 (369)
Q Consensus 36 v~~~~~s~~~~~~~~~la~~~~~~--v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~-----~~dg 108 (369)
...++.+|. .+..++.+-.-+ ..+||+.+++....+.... +.-+.=.-.|++||+ +|++. ...|
T Consensus 7 gH~~a~~p~---~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~-----gRHFyGHg~fs~dG~-~LytTEnd~~~g~G 77 (305)
T PF07433_consen 7 GHGVAAHPT---RPEAVAFARRPGTFALVFDCRTGQLLQRLWAPP-----GRHFYGHGVFSPDGR-LLYTTENDYETGRG 77 (305)
T ss_pred ccceeeCCC---CCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCC-----CCEEecCEEEcCCCC-EEEEeccccCCCcE
Confidence 345777884 357777777666 9999999999887776421 111111123459999 77765 3458
Q ss_pred eEEEEEcC-CccccceeeccccceEEEEecCCCCceEEEEe------------------CCCcEEEEEccCCcEEEEeec
Q 017553 109 IIRVIDVS-NEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS------------------KDESVRLWNVQTGICILIFAG 169 (369)
Q Consensus 109 ~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~------------------~dg~i~vwd~~~~~~~~~~~~ 169 (369)
.|-|||.. +-+.+.++..|.-.-..+.+.| ++..|+.+. .+-++.+.|..+|+.+.....
T Consensus 78 ~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~L 156 (305)
T PF07433_consen 78 VIGVYDAARGYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVEL 156 (305)
T ss_pred EEEEEECcCCcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeec
Confidence 89999998 5577888887776677888999 776565542 223455556666666555331
Q ss_pred c-CCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeee
Q 017553 170 A-GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW 248 (369)
Q Consensus 170 ~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 248 (369)
. .-|.-.|..+++.+ ++..++..-..| .. ...
T Consensus 157 p~~~~~lSiRHLa~~~-~G~V~~a~Q~qg-------~~--------------------------------~~~------- 189 (305)
T PF07433_consen 157 PPDLHQLSIRHLAVDG-DGTVAFAMQYQG-------DP--------------------------------GDA------- 189 (305)
T ss_pred CccccccceeeEEecC-CCcEEEEEecCC-------CC--------------------------------Ccc-------
Confidence 1 13555667777765 443222221111 00 000
Q ss_pred eCcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeE
Q 017553 249 LGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLI 328 (369)
Q Consensus 249 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 328 (369)
.-+++.-..++.+......... ...-...+-+|+++.++. .+.+++-..|.+.+||..+++....
T Consensus 190 -~PLva~~~~g~~~~~~~~p~~~-------------~~~l~~Y~gSIa~~~~g~-~ia~tsPrGg~~~~~d~~tg~~~~~ 254 (305)
T PF07433_consen 190 -PPLVALHRRGGALRLLPAPEEQ-------------WRRLNGYIGSIAADRDGR-LIAVTSPRGGRVAVWDAATGRLLGS 254 (305)
T ss_pred -CCeEEEEcCCCcceeccCChHH-------------HHhhCCceEEEEEeCCCC-EEEEECCCCCEEEEEECCCCCEeec
Confidence 1133333334444444443221 112235678899999986 3456666789999999999954333
Q ss_pred EEeecCCCccceEEEEecCCCCEEEEeec
Q 017553 329 ARLSHAQSKSPIRQTAMSYDGSTILSCCE 357 (369)
Q Consensus 329 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 357 (369)
..+ ..+..++-.+++ ++++.+.
T Consensus 255 ~~l------~D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 255 VPL------PDACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred ccc------CceeeeeecCCc-eEEeCCC
Confidence 332 246667777666 6665554
No 295
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.14 E-value=1.8e-09 Score=83.29 Aligned_cols=232 Identities=18% Similarity=0.193 Sum_probs=141.4
Q ss_pred ccceEEEEecCCCCceEEEEeCCCcEEEEEccCCc-EEE-EeeccCCC------------CCcEEEEEecC-CCceEEEE
Q 017553 128 GDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI-CIL-IFAGAGGH------------RNEVLSVDFHP-SDIYRIAS 192 (369)
Q Consensus 128 ~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~-~~~~~~~~------------~~~v~~~~~~~-~~~~~l~~ 192 (369)
...|+++.|.. .+.++++|...|.|.++.-+... +.. .+...++| ...|..+.|.. .+...++.
T Consensus 26 ad~ItaVefd~-tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 26 ADKITAVEFDE-TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred cceeeEEEecc-ccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 46799999998 88999999999999999765332 111 11111134 34577888764 23456777
Q ss_pred EeeCCcEEEEEccCceeeeee------eeeccCCCCCCC------------Cce-eecceee-eccCCCceeeeeee-Cc
Q 017553 193 CGMDNTVKIWSMKEFWTYVEK------SFTWTDLPSKFP------------TKY-VQFPVFI-ASVHSNYVDCNRWL-GD 251 (369)
Q Consensus 193 ~~~d~~v~i~d~~~~~~~~~~------~~~~~~~~~~~~------------~~~-~~~~~~~-~~~~~~~v~~~~~~-~~ 251 (369)
.+.|.+|++|.+......+.. .+.......... ... ...|.+. ...|+-.+.++.++ .+
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 788999999999874221111 111100000000 000 1112222 25688888999997 44
Q ss_pred EEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCC-----CCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCc-
Q 017553 252 FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPE-----CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP- 325 (369)
Q Consensus 252 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~- 325 (369)
..+....|-+|.+|++.-..... .+..++.+. .-|++..|+|... +++.-.+..|.|++-|++....
T Consensus 185 et~lSaDdLrINLWnl~i~D~sF------nIVDiKP~nmeeLteVItSaeFhp~~c-n~fmYSsSkG~Ikl~DlRq~alc 257 (460)
T COG5170 185 ETLLSADDLRINLWNLEIIDGSF------NIVDIKPHNMEELTEVITSAEFHPEMC-NVFMYSSSKGEIKLNDLRQSALC 257 (460)
T ss_pred heeeeccceeeeeccccccCCce------EEEeccCccHHHHHHHHhhcccCHhHc-ceEEEecCCCcEEehhhhhhhhc
Confidence 44444678899999987654311 122222222 3578889999876 4666677889999999983211
Q ss_pred ---eeEEEe--ec------CCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 326 ---VLIARL--SH------AQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 326 ---~~~~~~--~~------~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
..+..+ .. .+-...|..+.|+++|+++++-+. -+|+|||++-
T Consensus 258 dn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm 310 (460)
T COG5170 258 DNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNM 310 (460)
T ss_pred cCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccc
Confidence 111111 10 022357899999999999997765 4799999864
No 296
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.14 E-value=3e-10 Score=94.42 Aligned_cols=205 Identities=15% Similarity=0.228 Sum_probs=136.9
Q ss_pred CcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCc-------cccceeeccccceEEEEecCCCCceEEEEeCCCcE
Q 017553 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE-------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESV 153 (369)
Q Consensus 81 ~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i 153 (369)
.|.+.|..++-. ++.+-+++++.|.+|++|.++.. .+..++..|..+|.++.|.. +...++ +.||-|
T Consensus 733 GH~~~iRai~Ai---dNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i~--ScD~gi 806 (1034)
T KOG4190|consen 733 GHQEKIRAIAAI---DNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSIA--SCDGGI 806 (1034)
T ss_pred CcHHHhHHHHhc---ccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-ccceee--eccCcc
Confidence 466666666542 23336999999999999998632 34567778999999999998 666666 457899
Q ss_pred EEEEccCCcEEEEeeccCCC--CCcEEEEEecCCCceEEE-EEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceee
Q 017553 154 RLWNVQTGICILIFAGAGGH--RNEVLSVDFHPSDIYRIA-SCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQ 230 (369)
Q Consensus 154 ~vwd~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~-~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (369)
.+||.--++.+........| .+.|.++.-- +...++ -++...+|+++|.+..+...+-.
T Consensus 807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~nv--~~~iliAgcsaeSTVKl~DaRsce~~~E~k---------------- 868 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLENV--DRHILIAGCSAESTVKLFDARSCEWTCELK---------------- 868 (1034)
T ss_pred eeecccccchhHhhhcCcccCCCceeEecccC--cchheeeeccchhhheeeecccccceeeEE----------------
Confidence 99999888776644422222 2334444321 333344 44778999999999854332221
Q ss_pred cceeeeccCCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEE
Q 017553 231 FPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAI 308 (369)
Q Consensus 231 ~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~ 308 (369)
+....+.+..+.+++.. |+.++++-..|+|.+.|.++++ .+..+...++....++--.|. .|+.
T Consensus 869 --Vcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~---------vINswrpmecdllqlaapsdq---~L~~ 934 (1034)
T KOG4190|consen 869 --VCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGK---------VINSWRPMECDLLQLAAPSDQ---ALAQ 934 (1034)
T ss_pred --eccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCc---------eeccCCcccchhhhhcCchhH---HHHh
Confidence 22223445566676664 9999999999999999999997 344444444554444433332 6777
Q ss_pred ecCCCeEEE-EEccCC
Q 017553 309 GNREGKIFV-WELQSS 323 (369)
Q Consensus 309 ~~~dg~i~i-~d~~~~ 323 (369)
...|..+.+ |...++
T Consensus 935 saldHslaVnWhaldg 950 (1034)
T KOG4190|consen 935 SALDHSLAVNWHALDG 950 (1034)
T ss_pred hcccceeEeeehhcCC
Confidence 777888888 877666
No 297
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.11 E-value=1.9e-07 Score=80.19 Aligned_cols=263 Identities=10% Similarity=0.045 Sum_probs=148.8
Q ss_pred cEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccc
Q 017553 50 NVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHG 128 (369)
Q Consensus 50 ~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 128 (369)
..+..++.++ +.-+|..+|+.+-..+.. ..+.+--.. .++ .++.+..+|.|..+|.++|+.+.......
T Consensus 121 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~------~~~~ssP~v--~~~--~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 190 (394)
T PRK11138 121 GKVYIGSEKGQVYALNAEDGEVAWQTKVA------GEALSRPVV--SDG--LVLVHTSNGMLQALNESDGAVKWTVNLDV 190 (394)
T ss_pred CEEEEEcCCCEEEEEECCCCCCcccccCC------CceecCCEE--ECC--EEEEECCCCEEEEEEccCCCEeeeecCCC
Confidence 3455555555 999999899877665421 112111111 234 57778889999999999999887765321
Q ss_pred cceEE-EEecCC-CCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCC-C---cEEEEEecC-CCceEEEEEeeCCcEEE
Q 017553 129 DSINE-IRTQPL-KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR-N---EVLSVDFHP-SDIYRIASCGMDNTVKI 201 (369)
Q Consensus 129 ~~v~~-~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~---~v~~~~~~~-~~~~~l~~~~~d~~v~i 201 (369)
..+.. ..-+|. .+..++.++.+|.+..+|..+|+.+.......... . ....+..+| -.+..++.++.+|.+..
T Consensus 191 ~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~a 270 (394)
T PRK11138 191 PSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVA 270 (394)
T ss_pred CcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEE
Confidence 11000 001110 12356667888999999999998877654210000 0 011111111 01234666777899999
Q ss_pred EEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeeeCcEEEEeecCCeEEEecCCCCCCCCCCCccce
Q 017553 202 WSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADI 281 (369)
Q Consensus 202 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 281 (369)
+|..+++..-.... .....+...++.++.++.++.+..+|..+++..
T Consensus 271 ld~~tG~~~W~~~~-------------------------~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~-------- 317 (394)
T PRK11138 271 LDLRSGQIVWKREY-------------------------GSVNDFAVDGGRIYLVDQNDRVYALDTRGGVEL-------- 317 (394)
T ss_pred EECCCCCEEEeecC-------------------------CCccCcEEECCEEEEEcCCCeEEEEECCCCcEE--------
Confidence 99988643322110 001122344778888889999999999887631
Q ss_pred eeeccC-CCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceE-EEEecCCCCEEEEeecCC
Q 017553 282 LQKYPV-PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIR-QTAMSYDGSTILSCCEDG 359 (369)
Q Consensus 282 ~~~~~~-~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~s~~~dg 359 (369)
-.... ......+... .++ .++.++.+|.++.+|..+++. +......+ ..+. ...+ .+..|+.++.||
T Consensus 318 -W~~~~~~~~~~~sp~v-~~g---~l~v~~~~G~l~~ld~~tG~~--~~~~~~~~--~~~~s~P~~--~~~~l~v~t~~G 386 (394)
T PRK11138 318 -WSQSDLLHRLLTAPVL-YNG---YLVVGDSEGYLHWINREDGRF--VAQQKVDS--SGFLSEPVV--ADDKLLIQARDG 386 (394)
T ss_pred -EcccccCCCcccCCEE-ECC---EEEEEeCCCEEEEEECCCCCE--EEEEEcCC--CcceeCCEE--ECCEEEEEeCCc
Confidence 11110 0011111122 133 678889999999999999954 33333111 1222 1222 244788889999
Q ss_pred eEEEEec
Q 017553 360 AIWRWDA 366 (369)
Q Consensus 360 ~i~vw~~ 366 (369)
.|+.++.
T Consensus 387 ~l~~~~~ 393 (394)
T PRK11138 387 TVYAITR 393 (394)
T ss_pred eEEEEeC
Confidence 9988764
No 298
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=4.1e-09 Score=85.40 Aligned_cols=254 Identities=15% Similarity=0.081 Sum_probs=169.3
Q ss_pred cccceeEEEeeecCCCccEEEEeecCCeEEEEEcCC---ccccceeeccccceEEEEecCCCCceEEEEeC-CCcEEEEE
Q 017553 82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN---EKLHKSFVGHGDSINEIRTQPLKPSLVVSASK-DESVRLWN 157 (369)
Q Consensus 82 ~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-dg~i~vwd 157 (369)
|...|+.+... ... ++.+++.||.++.|.-.. -+.+..+..|...|.+++.+- ++.++.|.+. |..++++|
T Consensus 8 hrd~i~hv~~t---ka~-fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~-dg~L~~Sv~d~Dhs~KvfD 82 (558)
T KOG0882|consen 8 HRDVITHVFPT---KAK-FIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY-DGWLFRSVEDPDHSVKVFD 82 (558)
T ss_pred ccceeeeEeee---hhh-eEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc-cceeEeeccCcccceeEEE
Confidence 55555555432 334 999999999999998533 145667778999999999998 8889999887 99999999
Q ss_pred ccCCcEEEEeeccCCCCCcEEEEEe--cCCCc--eEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecce
Q 017553 158 VQTGICILIFAGAGGHRNEVLSVDF--HPSDI--YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV 233 (369)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~--~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (369)
+++-..+.-++ -....-.+.| +|.+. .+.++.-.++.+.++|-.... ....
T Consensus 83 vEn~DminmiK----L~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~---------------------~q~~ 137 (558)
T KOG0882|consen 83 VENFDMINMIK----LVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDF---------------------CQDG 137 (558)
T ss_pred eeccchhhhcc----cccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCc---------------------Cccc
Confidence 98766554333 1111122233 33111 223334457889999987621 1234
Q ss_pred eeeccCCCceeeeeee--CcEEEEeecCCeEEEecCCCCCC------CCCCCccceeeeccCCCCCeeEEEEeecCCccE
Q 017553 234 FIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQ------SPGEGTADILQKYPVPECDIWFIKFSCDFHYNA 305 (369)
Q Consensus 234 ~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~------~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~ 305 (369)
.....|..+|.++.++ ++.+++....|.|.-|.....-+ ........-+..+........++.|+|++. .
T Consensus 138 ~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~--q 215 (558)
T KOG0882|consen 138 YFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGA--Q 215 (558)
T ss_pred eecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccC--c
Confidence 4556789999999997 88899999999999999884111 111112223334444556778999999996 7
Q ss_pred EEEecCCCeEEEEEccCCCceeEEE---------------ee-------------cCCCc-cceEEEEecCCCCEEEEee
Q 017553 306 AAIGNREGKIFVWELQSSPPVLIAR---------------LS-------------HAQSK-SPIRQTAMSYDGSTILSCC 356 (369)
Q Consensus 306 l~~~~~dg~i~i~d~~~~~~~~~~~---------------~~-------------~~~~~-~~v~~~~~s~~~~~l~s~~ 356 (369)
+.+-..|..|++++..+++...... +. ...|. ..-+.+.|...|++|+-++
T Consensus 216 istl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t 295 (558)
T KOG0882|consen 216 ISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGT 295 (558)
T ss_pred ccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeec
Confidence 8888899999999998875321110 00 00111 2335678888899999888
Q ss_pred cCCeEEEEecCC
Q 017553 357 EDGAIWRWDAIP 368 (369)
Q Consensus 357 ~dg~i~vw~~~~ 368 (369)
-=| |+|.++.+
T Consensus 296 ~~g-ikvin~~t 306 (558)
T KOG0882|consen 296 ILG-IKVINLDT 306 (558)
T ss_pred cee-EEEEEeec
Confidence 766 78877764
No 299
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.08 E-value=1.2e-07 Score=75.59 Aligned_cols=227 Identities=13% Similarity=0.043 Sum_probs=127.3
Q ss_pred EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCC
Q 017553 60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPL 139 (369)
Q Consensus 60 v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 139 (369)
|..||..+|+.+.....- . .. ....+... +++. .+++++.++.|+.||..+|+.+..+.. .+.+......
T Consensus 5 l~~~d~~tG~~~W~~~~~-~-~~-~~~~~~~~---~~~~-~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~-- 74 (238)
T PF13360_consen 5 LSALDPRTGKELWSYDLG-P-GI-GGPVATAV---PDGG-RVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVV-- 74 (238)
T ss_dssp EEEEETTTTEEEEEEECS-S-SC-SSEEETEE---EETT-EEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEE--
T ss_pred EEEEECCCCCEEEEEECC-C-CC-CCccceEE---EeCC-EEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeee--
Confidence 778887788777666421 0 01 11111122 3445 677778999999999999998877764 2221111111
Q ss_pred CCceEEEEeCCCcEEEEEccCCcEEEEe-eccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeecc
Q 017553 140 KPSLVVSASKDESVRLWNVQTGICILIF-AGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWT 218 (369)
Q Consensus 140 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~ 218 (369)
.+..++.++.++.++.+|..+|+.+... .....-........... .+..++.+..++.|..+|+++++..........
T Consensus 75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV-DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE-ETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred cccccccccceeeeEecccCCcceeeeeccccccccccccccCceE-ecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence 3456677778889999999999999884 32100011112222222 345677777799999999999765443322100
Q ss_pred CCCCCCCCceeecceeeeccCCCceeeeeeeCcEEEEeecCCe-EEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEE
Q 017553 219 DLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNE-IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKF 297 (369)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 297 (369)
... .... ........+.+.+..++.+..++. +.+ |+.+++. +-... ......+ .
T Consensus 154 ~~~---------~~~~---~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~~---------~w~~~--~~~~~~~-~ 208 (238)
T PF13360_consen 154 RGS---------SPIS---SFSDINGSPVISDGRVYVSSGDGRVVAV-DLATGEK---------LWSKP--ISGIYSL-P 208 (238)
T ss_dssp -SS-----------EE---EETTEEEEEECCTTEEEEECCTSSEEEE-ETTTTEE---------EEEEC--SS-ECEC-E
T ss_pred CCC---------ccee---eecccccceEEECCEEEEEcCCCeEEEE-ECCCCCE---------EEEec--CCCccCC-c
Confidence 000 0000 000111222333447777777775 555 9888762 21211 1122221 3
Q ss_pred eecCCccEEEEecCCCeEEEEEccCCC
Q 017553 298 SCDFHYNAAAIGNREGKIFVWELQSSP 324 (369)
Q Consensus 298 s~~~~~~~l~~~~~dg~i~i~d~~~~~ 324 (369)
...+. .|++++.++.|..||+++++
T Consensus 209 ~~~~~--~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 209 SVDGG--TLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp ECCCT--EEEEEETTTEEEEEETTTTE
T ss_pred eeeCC--EEEEEeCCCEEEEEECCCCC
Confidence 34443 67777789999999999995
No 300
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.07 E-value=2.3e-07 Score=73.94 Aligned_cols=217 Identities=19% Similarity=0.149 Sum_probs=127.9
Q ss_pred CCeEEEEEcCCccccceeecc--ccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecC
Q 017553 107 NGIIRVIDVSNEKLHKSFVGH--GDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHP 184 (369)
Q Consensus 107 dg~i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 184 (369)
+|.|..||..+++.+....-- .....+... + ++..+++++.++.+..||..+|+.+............ ...
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~---~~~-- 74 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-P-DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA---PVV-- 74 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-E-ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG---EEE--
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEE-E-eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce---eee--
Confidence 689999999999988777531 112221122 2 4556777789999999999999999888731111112 122
Q ss_pred CCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccC-CCceeeeeeeCcEEEEeecCCeEE
Q 017553 185 SDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH-SNYVDCNRWLGDFILSKSVDNEIV 263 (369)
Q Consensus 185 ~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~l~~~~~d~~i~ 263 (369)
.+..++.+..++.++.+|..+++..-..... ..... ........+.++.++.+..++.|.
T Consensus 75 -~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 135 (238)
T PF13360_consen 75 -DGGRVYVGTSDGSLYALDAKTGKVLWSIYLT------------------SSPPAGVRSSSSPAVDGDRLYVGTSSGKLV 135 (238)
T ss_dssp -ETTEEEEEETTSEEEEEETTTSCEEEEEEE-------------------SSCTCSTB--SEEEEETTEEEEEETCSEEE
T ss_pred -cccccccccceeeeEecccCCcceeeeeccc------------------cccccccccccCceEecCEEEEEeccCcEE
Confidence 2334566667889999998886543321000 00000 111223333488888888899999
Q ss_pred EecCCCCCCCCCCCccceeeeccCCCCC----------eeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeec
Q 017553 264 LWEPKMKEQSPGEGTADILQKYPVPECD----------IWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSH 333 (369)
Q Consensus 264 i~d~~~~~~~~~~~~~~~~~~~~~~~~~----------i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 333 (369)
.+|+++++ .+-.+...... +..-....++ .+..++.++.+.-+|+.+++.. .....
T Consensus 136 ~~d~~tG~---------~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~g~~~~~d~~tg~~~--w~~~~ 201 (238)
T PF13360_consen 136 ALDPKTGK---------LLWKYPVGEPRGSSPISSFSDINGSPVISDG---RVYVSSGDGRVVAVDLATGEKL--WSKPI 201 (238)
T ss_dssp EEETTTTE---------EEEEEESSTT-SS--EEEETTEEEEEECCTT---EEEEECCTSSEEEEETTTTEEE--EEECS
T ss_pred EEecCCCc---------EEEEeecCCCCCCcceeeecccccceEEECC---EEEEEcCCCeEEEEECCCCCEE--EEecC
Confidence 99999987 33333322211 1112222233 5666666665333499998522 22221
Q ss_pred CCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 334 AQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 334 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
..+..+ ...++..|+.++.++.|..||+++
T Consensus 202 ----~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 202 ----SGIYSL-PSVDGGTLYVTSSDGRLYALDLKT 231 (238)
T ss_dssp ----S-ECEC-EECCCTEEEEEETTTEEEEEETTT
T ss_pred ----CCccCC-ceeeCCEEEEEeCCCEEEEEECCC
Confidence 223221 346677888888999999999876
No 301
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.05 E-value=8e-10 Score=86.38 Aligned_cols=172 Identities=12% Similarity=0.085 Sum_probs=121.3
Q ss_pred EEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCC
Q 017553 145 VSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKF 224 (369)
Q Consensus 145 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~ 224 (369)
++.+.+-.|-+-|+++|-. +.+. ..+.|.++.|.. .++++..|+.+|.|..+|+|.....
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~----sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG-------------- 287 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ----SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQG-------------- 287 (425)
T ss_pred ecccccceeEEEEeecccc-cccc----cchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccC--------------
Confidence 5666778888999987753 3333 667899999986 7899999999999999999983110
Q ss_pred CCceeecceeeeccCCCceeeee---eeCcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecC
Q 017553 225 PTKYVQFPVFIASVHSNYVDCNR---WLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDF 301 (369)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~v~~~~---~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 301 (369)
..-......|...|+++. |++++|++.+.+|.|++||++.-+. ..-+..+.+|...-.-+-+.-+.
T Consensus 288 -----~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~------~~~V~qYeGHvN~~a~l~~~v~~ 356 (425)
T KOG2695|consen 288 -----NGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKC------KKSVMQYEGHVNLSAYLPAHVKE 356 (425)
T ss_pred -----CCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhc------ccceeeeeccccccccccccccc
Confidence 011123345888888765 4688999999999999999997662 11377777776555555555454
Q ss_pred CccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecC
Q 017553 302 HYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSY 347 (369)
Q Consensus 302 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 347 (369)
+...+++++.|-..+||.++.+.......++.......+.+++|..
T Consensus 357 eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 357 EEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred ccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehhc
Confidence 4458888999999999999999543333333333334566677753
No 302
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.05 E-value=9.1e-09 Score=90.60 Aligned_cols=180 Identities=16% Similarity=0.216 Sum_probs=130.7
Q ss_pred EEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEE
Q 017553 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLS 179 (369)
Q Consensus 100 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~ 179 (369)
.++.|+....+..+|+++.+..+...-....|.-|+. +++.+.+|...|+|.+-|.++.+.++++. .|.+.|.+
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~---aHs~siSD 222 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFD---AHSGSISD 222 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeee---ccccceee
Confidence 6777777777888999988877776655556777776 56899999999999999999999999999 79999998
Q ss_pred EEecCCCceEEEEEee---------CCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee-
Q 017553 180 VDFHPSDIYRIASCGM---------DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL- 249 (369)
Q Consensus 180 ~~~~~~~~~~l~~~~~---------d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~- 249 (369)
+... |++|+++|. |.-|++||+|...... .+..+-++ .-+.|.
T Consensus 223 fDv~---GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~-----------------------PI~~~~~P-~flrf~P 275 (1118)
T KOG1275|consen 223 FDVQ---GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS-----------------------PIQFPYGP-QFLRFHP 275 (1118)
T ss_pred eecc---CCeEEEeecccccccccccchhhhhhhhhhhccC-----------------------CcccccCc-hhhhhcc
Confidence 8874 577888765 5568999999843211 11111111 112222
Q ss_pred --CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEE
Q 017553 250 --GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE 319 (369)
Q Consensus 250 --~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d 319 (369)
...+++++..|...+-|..+.... ...+.........+..+.+|++++ .++.|..+|.|.+|.
T Consensus 276 sl~t~~~V~S~sGq~q~vd~~~lsNP-----~~~~~~v~p~~s~i~~fDiSsn~~--alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 276 SLTTRLAVTSQSGQFQFVDTATLSNP-----PAGVKMVNPNGSGISAFDISSNGD--ALAFGDHEGHVNLWA 340 (1118)
T ss_pred cccceEEEEecccceeeccccccCCC-----ccceeEEccCCCcceeEEecCCCc--eEEEecccCcEeeec
Confidence 567888899999999994433211 012233333345588999999996 999999999999998
No 303
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.02 E-value=3.2e-06 Score=64.26 Aligned_cols=140 Identities=14% Similarity=0.044 Sum_probs=89.2
Q ss_pred ccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeecc
Q 017553 49 FNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGH 127 (369)
Q Consensus 49 ~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 127 (369)
..++..|+..+ +.--|..+|....+.. -+..+-+-+.. -|. +++.|...|.+++.+.++|.....+..-
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i------lg~RiE~sa~v---vgd-fVV~GCy~g~lYfl~~~tGs~~w~f~~~ 92 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI------LGVRIECSAIV---VGD-FVVLGCYSGGLYFLCVKTGSQIWNFVIL 92 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh------hCceeeeeeEE---ECC-EEEEEEccCcEEEEEecchhheeeeeeh
Confidence 45666666666 6666766666543321 22233333332 245 8999999999999999999888777643
Q ss_pred ccceEE-EEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcE-EEEEecCCCceEEEEEeeCCcEEEEEcc
Q 017553 128 GDSINE-IRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEV-LSVDFHPSDIYRIASCGMDNTVKIWSMK 205 (369)
Q Consensus 128 ~~~v~~-~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~~~~~d~~v~i~d~~ 205 (369)
. .|.+ ....+ ++.++..|+.|++.+..|.++..++...+ ..+.+ .+-+..| ....|..+...|.+.--...
T Consensus 93 ~-~vk~~a~~d~-~~glIycgshd~~~yalD~~~~~cVyksk----cgG~~f~sP~i~~-g~~sly~a~t~G~vlavt~~ 165 (354)
T KOG4649|consen 93 E-TVKVRAQCDF-DGGLIYCGSHDGNFYALDPKTYGCVYKSK----CGGGTFVSPVIAP-GDGSLYAAITAGAVLAVTKN 165 (354)
T ss_pred h-hhccceEEcC-CCceEEEecCCCcEEEecccccceEEecc----cCCceeccceecC-CCceEEEEeccceEEEEccC
Confidence 2 2322 23344 78899999999999999999999998876 33332 2334455 33445555555655444443
No 304
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.02 E-value=3.3e-10 Score=95.64 Aligned_cols=232 Identities=14% Similarity=0.160 Sum_probs=147.6
Q ss_pred ccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccc--cceeeccccceEEEEecCCCCceEEEEe----CCCcEEEE
Q 017553 83 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL--HKSFVGHGDSINEIRTQPLKPSLVVSAS----KDESVRLW 156 (369)
Q Consensus 83 ~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~----~dg~i~vw 156 (369)
...+.|+++....+.. ++++|..+|.|-+-.++...- .....+|....++++|++.|.+.||+|- .|..+.||
T Consensus 56 tqy~kcva~~y~~d~c-IlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRC-ILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred CCCceeehhhcCCchh-hhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 4466778887666644 899999999999988765432 2345578889999999998788888873 46789999
Q ss_pred EccCC--cEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeeccee
Q 017553 157 NVQTG--ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF 234 (369)
Q Consensus 157 d~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (369)
|+.++ .+.....-..+......+++|.. +..++++|...+.++++|+|... ..
T Consensus 135 di~s~ltvPke~~~fs~~~l~gqns~cwlr-d~klvlaGm~sr~~~ifdlRqs~------------------------~~ 189 (783)
T KOG1008|consen 135 DINSLLTVPKESPLFSSSTLDGQNSVCWLR-DTKLVLAGMTSRSVHIFDLRQSL------------------------DS 189 (783)
T ss_pred ecccccCCCccccccccccccCcccccccc-Ccchhhcccccchhhhhhhhhhh------------------------hh
Confidence 99876 22221111112344566889986 88899999999999999999511 11
Q ss_pred eeccCCCceeeee---eeCcEEEEeecCCeEEEec-CCCCCCCCCCCccceeeeccC----CCCCeeEEEEeecCCccEE
Q 017553 235 IASVHSNYVDCNR---WLGDFILSKSVDNEIVLWE-PKMKEQSPGEGTADILQKYPV----PECDIWFIKFSCDFHYNAA 306 (369)
Q Consensus 235 ~~~~~~~~v~~~~---~~~~~l~~~~~d~~i~i~d-~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~s~~~~~~~l 306 (369)
.....+..+..+. |.++++++-. ||.|.+|| .+..+. ++..... ....+..++|+|...+.+.
T Consensus 190 ~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnien--------pl~~i~~~~N~~~~~l~~~aycPtrtglla 260 (783)
T KOG1008|consen 190 VSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIEN--------PLQIILRNENKKPKQLFALAYCPTRTGLLA 260 (783)
T ss_pred hhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhcc--------HHHHHhhCCCCcccceeeEEeccCCcchhh
Confidence 1111122223333 3477888755 99999999 444332 2222111 1235889999998765444
Q ss_pred EEecCCCeEEEEEccCCCc--------ee--EEE--eecCCCccceEEEEecCCC
Q 017553 307 AIGNREGKIFVWELQSSPP--------VL--IAR--LSHAQSKSPIRQTAMSYDG 349 (369)
Q Consensus 307 ~~~~~dg~i~i~d~~~~~~--------~~--~~~--~~~~~~~~~v~~~~~s~~~ 349 (369)
+..-..++|++||+..... .. ..+ +++.+.-..|....|++..
T Consensus 261 ~l~RdS~tIrlydi~~v~t~~s~nn~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s 315 (783)
T KOG1008|consen 261 VLSRDSITIRLYDICVVGTEGSANNSVFVNYESKYPVQPNSQCSGIDFFTWHTAS 315 (783)
T ss_pred hhccCcceEEEecccccCCcccccccceeeecccccccccccccceeecCcCcCC
Confidence 4445668899999863210 11 111 2222223578888888654
No 305
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1.4e-07 Score=75.70 Aligned_cols=79 Identities=9% Similarity=0.166 Sum_probs=68.7
Q ss_pred CcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccC
Q 017553 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 160 (369)
Q Consensus 81 ~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 160 (369)
.+..-|..++|++...| ++..++.+..|.|.|+++...+..+..+ ..+++++|.-++.++|++|-..|.|.+||++.
T Consensus 191 ~~g~~IrdlafSp~~~G--Ll~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEG--LLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ 267 (463)
T ss_pred ccchhhhhhccCccccc--eeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence 46677888999855444 7899999999999999999999888877 88999999998888999999999999999986
Q ss_pred Cc
Q 017553 161 GI 162 (369)
Q Consensus 161 ~~ 162 (369)
.+
T Consensus 268 ~~ 269 (463)
T KOG1645|consen 268 PE 269 (463)
T ss_pred CC
Confidence 54
No 306
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=1.1e-07 Score=82.84 Aligned_cols=190 Identities=15% Similarity=0.189 Sum_probs=130.4
Q ss_pred ceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEE
Q 017553 85 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICI 164 (369)
Q Consensus 85 ~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 164 (369)
.++|++++ ++ +++-|+.+|.|++++.. +.. .+...|... .. ++.++++|+.||.|.|-.+-+.+..
T Consensus 41 ~is~~av~----~~-~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~-~Gey~asCS~DGkv~I~sl~~~~~~ 106 (846)
T KOG2066|consen 41 AISCCAVH----DK-FFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------IL-EGEYVASCSDDGKVVIGSLFTDDEI 106 (846)
T ss_pred HHHHHHhh----cc-eeeeccccceEEEEecC-Ccc-ccccccccc------cc-CCceEEEecCCCcEEEeeccCCccc
Confidence 44445443 34 89999999999999964 444 444445443 33 8999999999999999999988887
Q ss_pred EEeeccCCCCCcEEEEEecCC----CceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCC
Q 017553 165 LIFAGAGGHRNEVLSVDFHPS----DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 240 (369)
Q Consensus 165 ~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (369)
..+. ...++.+++++|+ ..+.+++|+.-| +.++.-+-... ..++ .+..-.
T Consensus 107 ~~~d----f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn--------------------k~~v-~l~~~e 160 (846)
T KOG2066|consen 107 TQYD----FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN--------------------KDSV-VLSEGE 160 (846)
T ss_pred eeEe----cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC--------------------ccce-eeecCc
Confidence 7775 7789999999993 256799999888 77765433110 1111 345567
Q ss_pred CceeeeeeeCcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEc
Q 017553 241 NYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL 320 (369)
Q Consensus 241 ~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~ 320 (369)
++|.++.|.|++++-+..+| |++||....+......... .....+..-..+.|.++. .|+.|=. .+|+|..+
T Consensus 161 G~I~~i~W~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~---~~~R~e~fpphl~W~~~~---~LVIGW~-d~v~i~~I 232 (846)
T KOG2066|consen 161 GPIHSIKWRGNLIAWANDDG-VKVYDTPTRQRLTNIPPPS---QSVRPELFPPHLHWQDED---RLVIGWG-DSVKICSI 232 (846)
T ss_pred cceEEEEecCcEEEEecCCC-cEEEeccccceeeccCCCC---CCCCcccCCCceEecCCC---eEEEecC-CeEEEEEE
Confidence 89999999999999977665 8999998887532222111 001111223357788876 4555544 46888888
Q ss_pred cC
Q 017553 321 QS 322 (369)
Q Consensus 321 ~~ 322 (369)
+.
T Consensus 233 ~~ 234 (846)
T KOG2066|consen 233 KK 234 (846)
T ss_pred ec
Confidence 73
No 307
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.97 E-value=8.1e-06 Score=65.29 Aligned_cols=217 Identities=15% Similarity=0.085 Sum_probs=130.1
Q ss_pred EEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcC
Q 017553 38 AVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVS 116 (369)
Q Consensus 38 ~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~ 116 (369)
++.|.+. .+.++.+--.++ |..|+..++... .+.. .. ...+++. .++|. |+.+...+ +.++|..
T Consensus 4 gp~~d~~---~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~------~~-~~G~~~~-~~~g~--l~v~~~~~-~~~~d~~ 68 (246)
T PF08450_consen 4 GPVWDPR---DGRLYWVDIPGGRIYRVDPDTGEVE-VIDL------PG-PNGMAFD-RPDGR--LYVADSGG-IAVVDPD 68 (246)
T ss_dssp EEEEETT---TTEEEEEETTTTEEEEEETTTTEEE-EEES------SS-EEEEEEE-CTTSE--EEEEETTC-EEEEETT
T ss_pred ceEEECC---CCEEEEEEcCCCEEEEEECCCCeEE-EEec------CC-CceEEEE-ccCCE--EEEEEcCc-eEEEecC
Confidence 4567763 467777776666 999997666543 2221 11 3334433 14554 55555544 5666988
Q ss_pred Cccccceeec-----cccceEEEEecCCCCceEEEEeCC--------CcEEEEEccCCcEEEEeeccCCCCCcEEEEEec
Q 017553 117 NEKLHKSFVG-----HGDSINEIRTQPLKPSLVVSASKD--------ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFH 183 (369)
Q Consensus 117 ~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~s~~~d--------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 183 (369)
+++....... .....+.+++.| ++++.++.... |.|..++.. ++...... .-...+.++|+
T Consensus 69 ~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~----~~~~pNGi~~s 142 (246)
T PF08450_consen 69 TGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD----GLGFPNGIAFS 142 (246)
T ss_dssp TTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE----EESSEEEEEEE
T ss_pred CCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeEEEEec----CcccccceEEC
Confidence 8754333332 345788999999 78877776543 457777776 55444333 34567899999
Q ss_pred CCCce-EEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCC
Q 017553 184 PSDIY-RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDN 260 (369)
Q Consensus 184 ~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~ 260 (369)
| +++ ++++-+..+.|..+++......... ................++++ |++.++....+
T Consensus 143 ~-dg~~lyv~ds~~~~i~~~~~~~~~~~~~~----------------~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~ 205 (246)
T PF08450_consen 143 P-DGKTLYVADSFNGRIWRFDLDADGGELSN----------------RRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGG 205 (246)
T ss_dssp T-TSSEEEEEETTTTEEEEEEEETTTCCEEE----------------EEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTT
T ss_pred C-cchheeecccccceeEEEeccccccceee----------------eeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCC
Confidence 9 665 5556777888999998752211100 01112222222346677776 77777777789
Q ss_pred eEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEe-ecCC
Q 017553 261 EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFS-CDFH 302 (369)
Q Consensus 261 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~ 302 (369)
.|.+++.. ++ .+..+..+...+++++|. ++.+
T Consensus 206 ~I~~~~p~-G~---------~~~~i~~p~~~~t~~~fgg~~~~ 238 (246)
T PF08450_consen 206 RIVVFDPD-GK---------LLREIELPVPRPTNCAFGGPDGK 238 (246)
T ss_dssp EEEEEETT-SC---------EEEEEE-SSSSEEEEEEESTTSS
T ss_pred EEEEECCC-cc---------EEEEEcCCCCCEEEEEEECCCCC
Confidence 99999987 44 556666665688999995 4544
No 308
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=9.1e-08 Score=76.71 Aligned_cols=159 Identities=11% Similarity=0.180 Sum_probs=100.3
Q ss_pred cceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCcc
Q 017553 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIP 99 (369)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~ 99 (369)
..|+....+.+|...|..++|||.. ..++..++.+. |+|.|+++...+..... ...+++++|. .|..+
T Consensus 181 ~~fkssq~lp~~g~~IrdlafSp~~---~GLl~~asl~nkiki~dlet~~~vssy~a------~~~~wSC~wD--lde~h 249 (463)
T KOG1645|consen 181 HDFKSSQILPGEGSFIRDLAFSPFN---EGLLGLASLGNKIKIMDLETSCVVSSYIA------YNQIWSCCWD--LDERH 249 (463)
T ss_pred CCcchhhcccccchhhhhhccCccc---cceeeeeccCceEEEEecccceeeeheec------cCCceeeeec--cCCcc
Confidence 4455555677899999999999942 23677788777 99999998877766652 2688999999 66677
Q ss_pred EEEEeecCCeEEEEEcCCccc-cceeec--cccceEEEEecCC-----CCceEEEEeCCCcEEEEEccC--CcEEEEeec
Q 017553 100 FLVAGGINGIIRVIDVSNEKL-HKSFVG--HGDSINEIRTQPL-----KPSLVVSASKDESVRLWNVQT--GICILIFAG 169 (369)
Q Consensus 100 ~l~~~~~dg~i~vwd~~~~~~-~~~~~~--~~~~v~~~~~~~~-----~~~~l~s~~~dg~i~vwd~~~--~~~~~~~~~ 169 (369)
++++|..+|.|.+||++..+- +..+.+ ...+|..++.-+. .+.+++..+.+ ...|+..- +.....+..
T Consensus 250 ~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlel 327 (463)
T KOG1645|consen 250 VIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLEL 327 (463)
T ss_pred eeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCccccc
Confidence 999999999999999986542 233322 2234444443321 34455544443 45665532 222222221
Q ss_pred cCCCCCcEEEEEecCCCceEEEEEe
Q 017553 170 AGGHRNEVLSVDFHPSDIYRIASCG 194 (369)
Q Consensus 170 ~~~~~~~v~~~~~~~~~~~~l~~~~ 194 (369)
+..+...++.+++.....|++.-
T Consensus 328 --e~pG~cismqy~~~snh~l~tyR 350 (463)
T KOG1645|consen 328 --EPPGICISMQYHGVSNHLLLTYR 350 (463)
T ss_pred --CCCcceeeeeecCccceEEEEec
Confidence 34566677777774445555543
No 309
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.97 E-value=4e-06 Score=72.05 Aligned_cols=276 Identities=9% Similarity=0.032 Sum_probs=149.3
Q ss_pred ccEEEEecCCc-EEEEEecCCceeEEEeeeccCCc-ccc-eeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceee
Q 017553 49 FNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDK-EES-FYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFV 125 (369)
Q Consensus 49 ~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~-~~~-v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 125 (369)
+..+.+++.++ +.-+|..+|+.+-..+....... ... -..+.-.+.-.+. .++.++.+|.++.+|.++|+.+.+..
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~v~v~~~~g~l~ald~~tG~~~W~~~ 147 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGG-KVYIGSEKGQVYALNAEDGEVAWQTK 147 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECC-EEEEEcCCCEEEEEECCCCCCccccc
Confidence 34555555555 88999888887765542110000 000 0000000001233 57788889999999999999887766
Q ss_pred ccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcE------EEEEecCCCceEEEEEeeCCcE
Q 017553 126 GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEV------LSVDFHPSDIYRIASCGMDNTV 199 (369)
Q Consensus 126 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v------~~~~~~~~~~~~l~~~~~d~~v 199 (369)
........... .+..++.+..++.+.-+|.++|+.+..... . .+. .+-... ++ .++.++.++.+
T Consensus 148 ~~~~~~ssP~v---~~~~v~v~~~~g~l~ald~~tG~~~W~~~~---~-~~~~~~~~~~sP~v~--~~-~v~~~~~~g~v 217 (394)
T PRK11138 148 VAGEALSRPVV---SDGLVLVHTSNGMLQALNESDGAVKWTVNL---D-VPSLTLRGESAPATA--FG-GAIVGGDNGRV 217 (394)
T ss_pred CCCceecCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeecC---C-CCcccccCCCCCEEE--CC-EEEEEcCCCEE
Confidence 43221111112 134566778889999999999999988762 1 111 011111 22 46667778999
Q ss_pred EEEEccCceeeeeeeeeccCCCCCCCCceeecceeee-ccCCCceeeeeeeCcEEEEeecCCeEEEecCCCCCCCCCCCc
Q 017553 200 KIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA-SVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGT 278 (369)
Q Consensus 200 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 278 (369)
..+|..+++..-+....... .. .....+ ..... ....++.++.++.++.+..+|..+++.
T Consensus 218 ~a~d~~~G~~~W~~~~~~~~--~~-------~~~~~~~~~~~s----P~v~~~~vy~~~~~g~l~ald~~tG~~------ 278 (394)
T PRK11138 218 SAVLMEQGQLIWQQRISQPT--GA-------TEIDRLVDVDTT----PVVVGGVVYALAYNGNLVALDLRSGQI------ 278 (394)
T ss_pred EEEEccCChhhheeccccCC--Cc-------cchhcccccCCC----cEEECCEEEEEEcCCeEEEEECCCCCE------
Confidence 99998886543222110000 00 000000 00011 112366777788899999999998863
Q ss_pred cceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecC
Q 017553 279 ADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCED 358 (369)
Q Consensus 279 ~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 358 (369)
+-+... .....+. ..+. .++.++.+|.+..+|..+++.. ........ ....+... .+.+|+.++.|
T Consensus 279 ---~W~~~~--~~~~~~~--~~~~--~vy~~~~~g~l~ald~~tG~~~--W~~~~~~~-~~~~sp~v--~~g~l~v~~~~ 344 (394)
T PRK11138 279 ---VWKREY--GSVNDFA--VDGG--RIYLVDQNDRVYALDTRGGVEL--WSQSDLLH-RLLTAPVL--YNGYLVVGDSE 344 (394)
T ss_pred ---EEeecC--CCccCcE--EECC--EEEEEcCCCeEEEEECCCCcEE--EcccccCC-CcccCCEE--ECCEEEEEeCC
Confidence 111111 1111122 2232 6777888999999999988532 22110011 11111222 24567778889
Q ss_pred CeEEEEecCC
Q 017553 359 GAIWRWDAIP 368 (369)
Q Consensus 359 g~i~vw~~~~ 368 (369)
|.|++.|..+
T Consensus 345 G~l~~ld~~t 354 (394)
T PRK11138 345 GYLHWINRED 354 (394)
T ss_pred CEEEEEECCC
Confidence 9998887654
No 310
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.96 E-value=2.2e-09 Score=58.27 Aligned_cols=39 Identities=36% Similarity=0.681 Sum_probs=36.4
Q ss_pred ccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEE
Q 017553 118 EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN 157 (369)
Q Consensus 118 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd 157 (369)
++++.++.+|.+.|++|+|+| ++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 356789999999999999999 899999999999999997
No 311
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.93 E-value=7.4e-09 Score=56.11 Aligned_cols=37 Identities=32% Similarity=0.468 Sum_probs=33.8
Q ss_pred eEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEe
Q 017553 327 LIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 365 (369)
Q Consensus 327 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~ 365 (369)
.+..+. +|...|++|+|+|++++|++++.|+.|++||
T Consensus 3 ~~~~~~--~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFR--GHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEE--SSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEc--CCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 455666 8999999999999999999999999999997
No 312
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.92 E-value=1.3e-05 Score=64.15 Aligned_cols=225 Identities=14% Similarity=0.105 Sum_probs=132.3
Q ss_pred EEeeecC-CCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEe
Q 017553 89 VSWACNV-DGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIF 167 (369)
Q Consensus 89 ~~~~~~~-~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 167 (369)
..|. + ++. ++++--..+.|+.|+..+++.. .+... . ...+++...++ .|+.+.. +.+.++|+.+++.....
T Consensus 5 p~~d--~~~g~-l~~~D~~~~~i~~~~~~~~~~~-~~~~~-~-~~G~~~~~~~g-~l~v~~~-~~~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 5 PVWD--PRDGR-LYWVDIPGGRIYRVDPDTGEVE-VIDLP-G-PNGMAFDRPDG-RLYVADS-GGIAVVDPDTGKVTVLA 76 (246)
T ss_dssp EEEE--TTTTE-EEEEETTTTEEEEEETTTTEEE-EEESS-S-EEEEEEECTTS-EEEEEET-TCEEEEETTTTEEEEEE
T ss_pred eEEE--CCCCE-EEEEEcCCCEEEEEECCCCeEE-EEecC-C-CceEEEEccCC-EEEEEEc-CceEEEecCCCcEEEEe
Confidence 5565 6 555 7777778899999998776542 22222 2 67777773154 4555555 44566699888655444
Q ss_pred ecc-CC-CCCcEEEEEecCCCceEEEEEeeC--------CcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeec
Q 017553 168 AGA-GG-HRNEVLSVDFHPSDIYRIASCGMD--------NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS 237 (369)
Q Consensus 168 ~~~-~~-~~~~v~~~~~~~~~~~~l~~~~~d--------~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (369)
... .. .....+.+++.| ++++.++.... |.|..++... + +....
T Consensus 77 ~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~~-~------------------------~~~~~ 130 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPDG-K------------------------VTVVA 130 (246)
T ss_dssp EEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETTS-E------------------------EEEEE
T ss_pred eccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCCC-e------------------------EEEEe
Confidence 421 12 345688999999 88877766543 3455555552 1 11112
Q ss_pred cCCCceeeeeee--CcEE-EEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCe
Q 017553 238 VHSNYVDCNRWL--GDFI-LSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGK 314 (369)
Q Consensus 238 ~~~~~v~~~~~~--~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~ 314 (369)
..-.....++|+ ++.| ++-+..+.|..|++....... .....+..+.......-.+++..+++ +.++....+.
T Consensus 131 ~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~g~pDG~~vD~~G~--l~va~~~~~~ 206 (246)
T PF08450_consen 131 DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGEL--SNRRVFIDFPGGPGYPDGLAVDSDGN--LWVADWGGGR 206 (246)
T ss_dssp EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCE--EEEEEEEE-SSSSCEEEEEEEBTTS---EEEEEETTTE
T ss_pred cCcccccceEECCcchheeecccccceeEEEeccccccce--eeeeeEEEcCCCCcCCCcceEcCCCC--EEEEEcCCCE
Confidence 223445678887 5555 466678889999986443100 00112222232223467789998885 6666667889
Q ss_pred EEEEEccCCCceeEEEeecCCCccceEEEEec-CCCCEEEEee
Q 017553 315 IFVWELQSSPPVLIARLSHAQSKSPIRQTAMS-YDGSTILSCC 356 (369)
Q Consensus 315 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~~ 356 (369)
|.++|.. ++ .+..+... ...+++++|. ++.+.|...+
T Consensus 207 I~~~~p~-G~--~~~~i~~p--~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 207 IVVFDPD-GK--LLREIELP--VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEETT-SC--EEEEEE-S--SSSEEEEEEESTTSSEEEEEE
T ss_pred EEEECCC-cc--EEEEEcCC--CCCEEEEEEECCCCCEEEEEe
Confidence 9999988 54 34444422 2478999994 6666555443
No 313
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.91 E-value=9.8e-07 Score=84.13 Aligned_cols=216 Identities=14% Similarity=0.067 Sum_probs=126.9
Q ss_pred eEEEEEeeccCCCccEEEEecC-Cc-EEEEEecCCceeEEEeeeccC-----Cc-------ccceeEEEeeecCCCccEE
Q 017553 36 LYAVVFNFIDSRYFNVFATVGG-NR-VTVYQCLEGGVIAALQSYVDE-----DK-------EESFYTVSWACNVDGIPFL 101 (369)
Q Consensus 36 v~~~~~s~~~~~~~~~la~~~~-~~-v~iw~~~~~~~~~~~~~~~~~-----~~-------~~~v~~~~~~~~~~g~~~l 101 (369)
...|++++ +++.|+.+.. +. |+++|..++. +..+...... .. -..-..+++. |++..++
T Consensus 626 P~GIavd~----~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~d--p~~g~Ly 698 (1057)
T PLN02919 626 PQGLAYNA----KKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFE--PVNEKVY 698 (1057)
T ss_pred CcEEEEeC----CCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEe--cCCCeEE
Confidence 57788888 4565555443 34 9999976654 3333211000 00 0112346666 8444377
Q ss_pred EEeecCCeEEEEEcCCccccceeec---------------cccceEEEEecCCCCc-eEEEEeCCCcEEEEEccCCcEEE
Q 017553 102 VAGGINGIIRVIDVSNEKLHKSFVG---------------HGDSINEIRTQPLKPS-LVVSASKDESVRLWNVQTGICIL 165 (369)
Q Consensus 102 ~~~~~dg~i~vwd~~~~~~~~~~~~---------------~~~~v~~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~ 165 (369)
++...++.|++||..++... .+.+ .-.....|+++| ++. ++++-+.++.|++||+.++....
T Consensus 699 Vad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~~Irv~D~~tg~~~~ 776 (1057)
T PLN02919 699 IAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSP-DLKELYIADSESSSIRALDLKTGGSRL 776 (1057)
T ss_pred EEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeC-CCCEEEEEECCCCeEEEEECCCCcEEE
Confidence 77788899999998766432 1111 112456799999 555 66677778999999998765322
Q ss_pred Eeec----------cCC--------CCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCc
Q 017553 166 IFAG----------AGG--------HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTK 227 (369)
Q Consensus 166 ~~~~----------~~~--------~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 227 (369)
.... ... .-.....+++++ +++++++-..++.|++||..++....... ........
T Consensus 777 ~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~LYVADs~N~rIrviD~~tg~v~tiaG---~G~~G~~d-- 850 (1057)
T PLN02919 777 LAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQIYVADSYNHKIKKLDPATKRVTTLAG---TGKAGFKD-- 850 (1057)
T ss_pred EEecccccCcccccccCCCCchhhhhccCCceeeEeC-CCcEEEEECCCCEEEEEECCCCeEEEEec---cCCcCCCC--
Confidence 1100 000 111346889998 78888888899999999998743221110 00000000
Q ss_pred eeecceeeeccCCCceeeeeee--CcEEEEeecCCeEEEecCCCCC
Q 017553 228 YVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKE 271 (369)
Q Consensus 228 ~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~ 271 (369)
.. .....-.....++++ |+.+++-+.++.|++||+.+.+
T Consensus 851 --G~---~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 851 --GK---ALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred --Cc---ccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 00 011222345566665 7788888889999999998865
No 314
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=4.8e-08 Score=79.41 Aligned_cols=210 Identities=15% Similarity=0.112 Sum_probs=144.0
Q ss_pred ccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEee-CCcEEEEEc
Q 017553 126 GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM-DNTVKIWSM 204 (369)
Q Consensus 126 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~~v~i~d~ 204 (369)
.|.+.|+.+.-. ..+++.+++.||.++.|--..-.-+........|...|.+++.+- ++.++.+.+. |..++++|+
T Consensus 7 mhrd~i~hv~~t--ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~-dg~L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 7 MHRDVITHVFPT--KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY-DGWLFRSVEDPDHSVKVFDV 83 (558)
T ss_pred cccceeeeEeee--hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc-cceeEeeccCcccceeEEEe
Confidence 377888877665 468999999999999998654233333333336888999999997 8899999777 999999999
Q ss_pred cCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeeeC----cEEEEeecCCeEEEecCCCCCCCCCCCccc
Q 017553 205 KEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLG----DFILSKSVDNEIVLWEPKMKEQSPGEGTAD 280 (369)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 280 (369)
.+..... ...+..-++.+..+.-.| ...++.-.++.+.++|-..... +
T Consensus 84 En~Dmin---------------------miKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~-------q 135 (558)
T KOG0882|consen 84 ENFDMIN---------------------MIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFC-------Q 135 (558)
T ss_pred eccchhh---------------------hcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcC-------c
Confidence 8832110 111112222222211113 2334445578899999876542 1
Q ss_pred eeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCC----CceeEEEee-------cCCCccceEEEEecCCC
Q 017553 281 ILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS----PPVLIARLS-------HAQSKSPIRQTAMSYDG 349 (369)
Q Consensus 281 ~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~-------~~~~~~~v~~~~~s~~~ 349 (369)
....-..|..+|..+.+.+.+. .+.+....|-|.-|..... +......+. ........+++.|+|+|
T Consensus 136 ~~~fkklH~sPV~~i~y~qa~D--s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g 213 (558)
T KOG0882|consen 136 DGYFKKLHFSPVKKIRYNQAGD--SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDG 213 (558)
T ss_pred cceecccccCceEEEEeecccc--ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcccc
Confidence 3444456778999999999986 7888888999999998741 001111111 11345678899999999
Q ss_pred CEEEEeecCCeEEEEecCC
Q 017553 350 STILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 350 ~~l~s~~~dg~i~vw~~~~ 368 (369)
..+.+-+.|..|+++++.+
T Consensus 214 ~qistl~~DrkVR~F~~Kt 232 (558)
T KOG0882|consen 214 AQISTLNPDRKVRGFVFKT 232 (558)
T ss_pred CcccccCcccEEEEEEecc
Confidence 9999999999999998765
No 315
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.86 E-value=8.4e-06 Score=70.01 Aligned_cols=209 Identities=11% Similarity=-0.013 Sum_probs=115.2
Q ss_pred CeEEEEEcCCccccceeeccccceEEEEecCCCCc-eEEEEeC---CCcEEEEEccCCcEEEEeeccCCCCCcEEEEEec
Q 017553 108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPS-LVVSASK---DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFH 183 (369)
Q Consensus 108 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 183 (369)
..|.+-|.+ +...+.+... +....-.|+| +++ .++..+. +..|.++|+.+++...... ..+......|+
T Consensus 169 ~~l~~~d~d-g~~~~~~~~~-~~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~----~~g~~~~~~~S 241 (419)
T PRK04043 169 SNIVLADYT-LTYQKVIVKG-GLNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS----SQGMLVVSDVS 241 (419)
T ss_pred ceEEEECCC-CCceeEEccC-CCeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEEEec----CCCcEEeeEEC
Confidence 356665653 3333334333 3778899999 666 3554333 3569999998887655443 44556678899
Q ss_pred CCCceEEEEEeeCC--cEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEee-c
Q 017553 184 PSDIYRIASCGMDN--TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS-V 258 (369)
Q Consensus 184 ~~~~~~l~~~~~d~--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~-~ 258 (369)
|++..++++.+.++ .|.++|+.++. ...+..+........|+ |+.++..+ .
T Consensus 242 PDG~~la~~~~~~g~~~Iy~~dl~~g~------------------------~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr 297 (419)
T PRK04043 242 KDGSKLLLTMAPKGQPDIYLYDTNTKT------------------------LTQITNYPGIDVNGNFVEDDKRIVFVSDR 297 (419)
T ss_pred CCCCEEEEEEccCCCcEEEEEECCCCc------------------------EEEcccCCCccCccEECCCCCEEEEEECC
Confidence 94444555555444 57777776632 11111122112223454 66555444 3
Q ss_pred CC--eEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCC--------CeEEEEEccCCCceeE
Q 017553 259 DN--EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE--------GKIFVWELQSSPPVLI 328 (369)
Q Consensus 259 d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~ 328 (369)
.+ .|.+.|+.+++. ..+..... ....|+|+++. ++++.... ..|.+.|+.++..
T Consensus 298 ~g~~~Iy~~dl~~g~~----------~rlt~~g~--~~~~~SPDG~~-Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~--- 361 (419)
T PRK04043 298 LGYPNIFMKKLNSGSV----------EQVVFHGK--NNSSVSTYKNY-IVYSSRETNNEFGKNTFNLYLISTNSDYI--- 361 (419)
T ss_pred CCCceEEEEECCCCCe----------EeCccCCC--cCceECCCCCE-EEEEEcCCCcccCCCCcEEEEEECCCCCe---
Confidence 33 577788876642 11111111 12489999983 33333332 3788889888753
Q ss_pred EEeecCCCccceEEEEecCCCCEEEEeecCC-e--EEEEec
Q 017553 329 ARLSHAQSKSPIRQTAMSYDGSTILSCCEDG-A--IWRWDA 366 (369)
Q Consensus 329 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg-~--i~vw~~ 366 (369)
..+...+ ......|+|||+.|+..+.++ . +.+.++
T Consensus 362 ~~LT~~~---~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l 399 (419)
T PRK04043 362 RRLTANG---VNQFPRFSSDGGSIMFIKYLGNQSALGIIRL 399 (419)
T ss_pred EECCCCC---CcCCeEECCCCCEEEEEEccCCcEEEEEEec
Confidence 2333211 223578999999877665432 2 444444
No 316
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.81 E-value=1.6e-05 Score=68.29 Aligned_cols=194 Identities=11% Similarity=0.006 Sum_probs=105.0
Q ss_pred ceeEEEeeecCCCccEEEE-eec--CCeEEEEEcCCccccceeeccccceEEEEecCCCCc-eEEEEeCC--CcEEEEEc
Q 017553 85 SFYTVSWACNVDGIPFLVA-GGI--NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPS-LVVSASKD--ESVRLWNV 158 (369)
Q Consensus 85 ~v~~~~~~~~~~g~~~l~~-~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~d--g~i~vwd~ 158 (369)
....-.|+ |||+..++. ... +..|+++|+.+++..... ...+......|+| +++ ++++.+.+ ..|.++|+
T Consensus 189 ~~~~p~wS--pDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~dl 264 (419)
T PRK04043 189 LNIFPKWA--NKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSK-DGSKLLLTMAPKGQPDIYLYDT 264 (419)
T ss_pred CeEeEEEC--CCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECC-CCCEEEEEEccCCCcEEEEEEC
Confidence 44456666 999743443 332 357999999887654333 2445566788999 665 44455444 46778888
Q ss_pred cCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEe-eCC--cEEEEEccCceeeeeeeeeccCCCCCCCCceeecceee
Q 017553 159 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG-MDN--TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI 235 (369)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (369)
.+++.. .+. .+........|+| +++.|+..+ ..+ .|.+.|+.++... .+ .
T Consensus 265 ~~g~~~-~LT---~~~~~d~~p~~SP-DG~~I~F~Sdr~g~~~Iy~~dl~~g~~~---------------------rl-t 317 (419)
T PRK04043 265 NTKTLT-QIT---NYPGIDVNGNFVE-DDKRIVFVSDRLGYPNIFMKKLNSGSVE---------------------QV-V 317 (419)
T ss_pred CCCcEE-Ecc---cCCCccCccEECC-CCCEEEEEECCCCCceEEEEECCCCCeE---------------------eC-c
Confidence 777643 343 2333334567999 665454443 344 5666777653210 00 0
Q ss_pred eccCCCceeeeeeeCcEEEEeecC---------CeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEE
Q 017553 236 ASVHSNYVDCNRWLGDFILSKSVD---------NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAA 306 (369)
Q Consensus 236 ~~~~~~~v~~~~~~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l 306 (369)
..+. ....+..+|+.++..... ..|.+.|+.++.. ..+... .......|+|||+. ++
T Consensus 318 ~~g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~----------~~LT~~-~~~~~p~~SPDG~~-I~ 383 (419)
T PRK04043 318 FHGK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI----------RRLTAN-GVNQFPRFSSDGGS-IM 383 (419)
T ss_pred cCCC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe----------EECCCC-CCcCCeEECCCCCE-EE
Confidence 0111 111222337766655543 3678888876642 122211 12235789999983 22
Q ss_pred EEecCC--CeEEEEEccCC
Q 017553 307 AIGNRE--GKIFVWELQSS 323 (369)
Q Consensus 307 ~~~~~d--g~i~i~d~~~~ 323 (369)
++.... ..+.+.++...
T Consensus 384 f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 384 FIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred EEEccCCcEEEEEEecCCC
Confidence 332222 34667777654
No 317
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.75 E-value=1.5e-05 Score=62.55 Aligned_cols=223 Identities=9% Similarity=0.042 Sum_probs=117.6
Q ss_pred eeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEE
Q 017553 123 SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIW 202 (369)
Q Consensus 123 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~ 202 (369)
.+.+-...+..|+|+|+.+.++++....+.|..++. +|+.++.+.- .-.+..-.+++.. ++.++++--.++.+.++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l--~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~ 91 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPL--DGFGDYEGITYLG-NGRYVLSEERDQRLYIF 91 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE---SS-SSEEEEEE-S-TTEEEEEETTTTEEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeC--CCCCCceeEEEEC-CCEEEEEEcCCCcEEEE
Confidence 444555679999999966778888888899988886 5788877763 1235678889885 66766666568899999
Q ss_pred EccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEEEecCCCCC--CCCCCCc
Q 017553 203 SMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKE--QSPGEGT 278 (369)
Q Consensus 203 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~ 278 (369)
++........... .....+.....++..+-.++|+ ++.|+.+-...-..+|.++... .......
T Consensus 92 ~~~~~~~~~~~~~------------~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~ 159 (248)
T PF06977_consen 92 TIDDDTTSLDRAD------------VQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSD 159 (248)
T ss_dssp EE----TT--EEE------------EEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE
T ss_pred EEeccccccchhh------------ceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecc
Confidence 9855221110000 0001111112355678899998 5666666666666777665411 0000000
Q ss_pred cceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCC-----ccceEEEEecCCCCEEE
Q 017553 279 ADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQS-----KSPIRQTAMSYDGSTIL 353 (369)
Q Consensus 279 ~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~ 353 (369)
...+.........+.++++.|... .+++.+..+..|..+| ..+++.....+....| -...-.|+|.++|++.+
T Consensus 160 ~~~~~~~~~~~~d~S~l~~~p~t~-~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI 237 (248)
T PF06977_consen 160 DQDLDDDKLFVRDLSGLSYDPRTG-HLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI 237 (248)
T ss_dssp -HHHH-HT--SS---EEEEETTTT-EEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE
T ss_pred ccccccccceeccccceEEcCCCC-eEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE
Confidence 000111122334578899998866 4777788889999999 5554444445542111 13578899999997665
Q ss_pred EeecCCeEEEE
Q 017553 354 SCCEDGAIWRW 364 (369)
Q Consensus 354 s~~~dg~i~vw 364 (369)
+ ++-+..++|
T Consensus 238 v-sEpNlfy~f 247 (248)
T PF06977_consen 238 V-SEPNLFYRF 247 (248)
T ss_dssp E-ETTTEEEEE
T ss_pred E-cCCceEEEe
Confidence 4 466666665
No 318
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=7.4e-06 Score=72.51 Aligned_cols=196 Identities=13% Similarity=0.139 Sum_probs=127.8
Q ss_pred CCCccEEEEeecCCeEEEEEcCCccccceeeccccc-eEEEEecCCCCceEEEEeCCCc-----EEEEEccCC------c
Q 017553 95 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDS-INEIRTQPLKPSLVVSASKDES-----VRLWNVQTG------I 162 (369)
Q Consensus 95 ~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~s~~~dg~-----i~vwd~~~~------~ 162 (369)
+.+. .++.|+.+|.|.+++ ..-+.++.++.+... |..+-... +.++|++.+.|+. +++|+++.- +
T Consensus 33 s~~~-~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~ 109 (933)
T KOG2114|consen 33 SSTG-SVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQ 109 (933)
T ss_pred CCCc-eEEEeeccccEEEec-ccceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCCCcc
Confidence 6666 899999999988887 445556788887776 44444333 5578888887754 899998632 2
Q ss_pred EE---EEeecc-CCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeecc
Q 017553 163 CI---LIFAGA-GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV 238 (369)
Q Consensus 163 ~~---~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (369)
++ +.+... +....++.+++.+. +-..+++|-.+|.|..+.-+-.. ...........
T Consensus 110 c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~R-------------------Drgsr~~~~~~ 169 (933)
T KOG2114|consen 110 CLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILR-------------------DRGSRQDYSHR 169 (933)
T ss_pred eeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchh-------------------ccccceeeecc
Confidence 33 111101 12356788999997 78889999999999888533210 00111222334
Q ss_pred CCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEE
Q 017553 239 HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF 316 (369)
Q Consensus 239 ~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~ 316 (369)
...+|+.+.+. +..++-......|.+|.+.... ........+..++.+..+++... .+++++. ..+.
T Consensus 170 ~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~--------p~~~~ld~~G~~lnCss~~~~t~--qfIca~~-e~l~ 238 (933)
T KOG2114|consen 170 GKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT--------PSLKVLDNNGISLNCSSFSDGTY--QFICAGS-EFLY 238 (933)
T ss_pred CCCCceeeEEecCCceeEEEEecceeEEEEecCCC--------cceeeeccCCccceeeecCCCCc--cEEEecC-ceEE
Confidence 46789999986 5543334455678999988432 13555667778888888887663 3555444 4699
Q ss_pred EEEccCCC
Q 017553 317 VWELQSSP 324 (369)
Q Consensus 317 i~d~~~~~ 324 (369)
+||.....
T Consensus 239 fY~sd~~~ 246 (933)
T KOG2114|consen 239 FYDSDGRG 246 (933)
T ss_pred EEcCCCcc
Confidence 99988654
No 319
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.73 E-value=9.4e-06 Score=74.62 Aligned_cols=219 Identities=11% Similarity=0.102 Sum_probs=130.2
Q ss_pred ccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCc
Q 017553 128 GDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEF 207 (369)
Q Consensus 128 ~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~ 207 (369)
.+.|.++.|.- +.+.++.+..+|.|.+-|.++...... . .-...|.+++|+| ++..++..+.++++.+-.- ..
T Consensus 68 d~~i~s~~fl~-d~~~i~v~~~~G~iilvd~et~~~eiv-g---~vd~GI~aaswS~-Dee~l~liT~~~tll~mT~-~f 140 (1265)
T KOG1920|consen 68 DDEIVSVQFLA-DTNSICVITALGDIILVDPETLELEIV-G---NVDNGISAASWSP-DEELLALITGRQTLLFMTK-DF 140 (1265)
T ss_pred CcceEEEEEec-ccceEEEEecCCcEEEEcccccceeee-e---eccCceEEEeecC-CCcEEEEEeCCcEEEEEec-cc
Confidence 35899999998 788888889999999998877654332 2 3677899999999 8888888887777765432 11
Q ss_pred eeeeeeee-------------eccCCCCCCCCceeecceeeecc---------CCCceeeeeee--CcEEEEee----cC
Q 017553 208 WTYVEKSF-------------TWTDLPSKFPTKYVQFPVFIASV---------HSNYVDCNRWL--GDFILSKS----VD 259 (369)
Q Consensus 208 ~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~---------~~~~v~~~~~~--~~~l~~~~----~d 259 (369)
....+... .|......+.............. -.+.=+.+.|- |+++++.. .+
T Consensus 141 ~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~ 220 (1265)
T KOG1920|consen 141 EPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETG 220 (1265)
T ss_pred cchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCC
Confidence 11111111 11111111111000000000000 11122357775 77877732 23
Q ss_pred -CeEEEecCCCCCCCCCCCccceeeecc-CCCCCeeEEEEeecCCccEEEEe---cCCCeEEEEEccCCCceeEEEeecC
Q 017553 260 -NEIVLWEPKMKEQSPGEGTADILQKYP-VPECDIWFIKFSCDFHYNAAAIG---NREGKIFVWELQSSPPVLIARLSHA 334 (369)
Q Consensus 260 -~~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~ 334 (369)
+.|++||-. +.. .... .....-.+++|-|.|. .+++- +.|+.|.+|.-+..+ .-...++.+
T Consensus 221 ~RkirV~drE-g~L----------ns~se~~~~l~~~LsWkPsgs--~iA~iq~~~sd~~IvffErNGL~-hg~f~l~~p 286 (1265)
T KOG1920|consen 221 TRKIRVYDRE-GAL----------NSTSEPVEGLQHSLSWKPSGS--LIAAIQCKTSDSDIVFFERNGLR-HGEFVLPFP 286 (1265)
T ss_pred ceeEEEeccc-chh----------hcccCcccccccceeecCCCC--eEeeeeecCCCCcEEEEecCCcc-ccccccCCc
Confidence 789999977 321 1111 1123345789999885 66653 356789999866532 122222322
Q ss_pred CCccceEEEEecCCCCEEEE---eecCCeEEEEecC
Q 017553 335 QSKSPIRQTAMSYDGSTILS---CCEDGAIWRWDAI 367 (369)
Q Consensus 335 ~~~~~v~~~~~s~~~~~l~s---~~~dg~i~vw~~~ 367 (369)
....+|..++|+.++..||+ ......|++|-+.
T Consensus 287 ~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~ 322 (1265)
T KOG1920|consen 287 LDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTG 322 (1265)
T ss_pred ccccchheeeecCCCCceeeeecccccceEEEEEec
Confidence 44456999999999999988 5566669999764
No 320
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.72 E-value=6.5e-05 Score=69.41 Aligned_cols=244 Identities=14% Similarity=0.177 Sum_probs=141.6
Q ss_pred CcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEc--
Q 017553 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV-- 158 (369)
Q Consensus 81 ~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~-- 158 (369)
.....|.++.|. .+.. .++.+...|.|.+-|..+... .....-...|.+++|+| +...++..+..+++.+-+-
T Consensus 66 ~gd~~i~s~~fl--~d~~-~i~v~~~~G~iilvd~et~~~-eivg~vd~GI~aaswS~-Dee~l~liT~~~tll~mT~~f 140 (1265)
T KOG1920|consen 66 DGDDEIVSVQFL--ADTN-SICVITALGDIILVDPETLEL-EIVGNVDNGISAASWSP-DEELLALITGRQTLLFMTKDF 140 (1265)
T ss_pred CCCcceEEEEEe--cccc-eEEEEecCCcEEEEcccccce-eeeeeccCceEEEeecC-CCcEEEEEeCCcEEEEEeccc
Confidence 344577666666 7776 788888889999988766542 22222456899999999 8888888888787766542
Q ss_pred --cCCcEE-------------------EEeeccCC------------------CCCcEEEEEecCCCceEEEEEe----e
Q 017553 159 --QTGICI-------------------LIFAGAGG------------------HRNEVLSVDFHPSDIYRIASCG----M 195 (369)
Q Consensus 159 --~~~~~~-------------------~~~~~~~~------------------~~~~v~~~~~~~~~~~~l~~~~----~ 195 (369)
-..+++ ..+....+ ..+.=+.+.|-- +|.++++.. .
T Consensus 141 ~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg-Dg~~fAVs~~~~~~ 219 (1265)
T KOG1920|consen 141 EPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRG-DGEYFAVSFVESET 219 (1265)
T ss_pred cchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEcc-CCcEEEEEEEeccC
Confidence 111111 11110000 011123588886 888888732 2
Q ss_pred C-CcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEee---cCCeEEEecCCC
Q 017553 196 D-NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS---VDNEIVLWEPKM 269 (369)
Q Consensus 196 d-~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~---~d~~i~i~d~~~ 269 (369)
+ +.+++||-+. .... .-......-.+++|- |..+++-. .|+.|.+|.-+.
T Consensus 220 ~~RkirV~drEg-~Lns-----------------------~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNG 275 (1265)
T KOG1920|consen 220 GTRKIRVYDREG-ALNS-----------------------TSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNG 275 (1265)
T ss_pred CceeEEEecccc-hhhc-----------------------ccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCC
Confidence 3 7899999873 1100 000111222345553 66666543 356799988665
Q ss_pred CCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEE---ecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEec
Q 017553 270 KEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAI---GNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMS 346 (369)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~---~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s 346 (369)
.+. ....-.++.....+..++|+.++. .|++ ......|++|-+.+....+.+.+..+. ... +.|+
T Consensus 276 L~h------g~f~l~~p~de~~ve~L~Wns~sd--iLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~--~~~--~~W~ 343 (1265)
T KOG1920|consen 276 LRH------GEFVLPFPLDEKEVEELAWNSNSD--ILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQ--KAL--LMWD 343 (1265)
T ss_pred ccc------cccccCCcccccchheeeecCCCC--ceeeeecccccceEEEEEecCeEEEEEEEEeccc--ccc--cccc
Confidence 442 222233344445589999999997 6665 445555999999988665555555321 111 7777
Q ss_pred CCC-CEEEEeecCCeEEEEec
Q 017553 347 YDG-STILSCCEDGAIWRWDA 366 (369)
Q Consensus 347 ~~~-~~l~s~~~dg~i~vw~~ 366 (369)
|.. ..|..-..+|...++++
T Consensus 344 p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 344 PVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred CCCceeEEEEecCCcEEEEEE
Confidence 743 23333335666555543
No 321
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=2e-06 Score=75.35 Aligned_cols=188 Identities=12% Similarity=0.104 Sum_probs=125.6
Q ss_pred CCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeE
Q 017553 32 GKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGII 110 (369)
Q Consensus 32 h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i 110 (369)
..+.++|++++. ++||-|.-++ |++++... .. ..... |... +.+|. ++++|+.||+|
T Consensus 38 ~~D~is~~av~~------~~~~~GtH~g~v~~~~~~~-~~-~~~~~-----~s~~--------~~~Ge-y~asCS~DGkv 95 (846)
T KOG2066|consen 38 QNDAISCCAVHD------KFFALGTHRGAVYLTTCQG-NP-KTNFD-----HSSS--------ILEGE-YVASCSDDGKV 95 (846)
T ss_pred hhhHHHHHHhhc------ceeeeccccceEEEEecCC-cc-ccccc-----cccc--------ccCCc-eEEEecCCCcE
Confidence 356788998885 8999999888 99999543 32 22221 2211 37888 99999999999
Q ss_pred EEEEcCCccccceeeccccceEEEEecCC----CCceEEEEeCCCcEEEEEcc---CCcEEEEeeccCCCCCcEEEEEec
Q 017553 111 RVIDVSNEKLHKSFVGHGDSINEIRTQPL----KPSLVVSASKDESVRLWNVQ---TGICILIFAGAGGHRNEVLSVDFH 183 (369)
Q Consensus 111 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~s~~~dg~i~vwd~~---~~~~~~~~~~~~~~~~~v~~~~~~ 183 (369)
.|-.+.+.+...++. ...++.+++++|+ ....+++|+..| +.++.-+ ....+ .+. .-.++|.++.|.
T Consensus 96 ~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~---~~eG~I~~i~W~ 169 (846)
T KOG2066|consen 96 VIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLS---EGEGPIHSIKWR 169 (846)
T ss_pred EEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eee---cCccceEEEEec
Confidence 999998888776665 4578999999994 256899999988 7776532 11122 233 467899999995
Q ss_pred CCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeeeCcEEEEeecCCeEE
Q 017553 184 PSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIV 263 (369)
Q Consensus 184 ~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~ 263 (369)
+++++-++.+| |++||....+........ . ...........+.|..+.-++-|...+|+
T Consensus 170 ---g~lIAWand~G-v~vyd~~~~~~l~~i~~p----------------~-~~~R~e~fpphl~W~~~~~LVIGW~d~v~ 228 (846)
T KOG2066|consen 170 ---GNLIAWANDDG-VKVYDTPTRQRLTNIPPP----------------S-QSVRPELFPPHLHWQDEDRLVIGWGDSVK 228 (846)
T ss_pred ---CcEEEEecCCC-cEEEeccccceeeccCCC----------------C-CCCCcccCCCceEecCCCeEEEecCCeEE
Confidence 57788887665 899999885433221111 0 00111222334666644334445666788
Q ss_pred EecCC
Q 017553 264 LWEPK 268 (369)
Q Consensus 264 i~d~~ 268 (369)
+..++
T Consensus 229 i~~I~ 233 (846)
T KOG2066|consen 229 ICSIK 233 (846)
T ss_pred EEEEe
Confidence 88887
No 322
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.70 E-value=4e-05 Score=65.79 Aligned_cols=235 Identities=15% Similarity=0.128 Sum_probs=117.6
Q ss_pred cccCCcCeEEEEEeeccCCCccEEEEecCCcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCC
Q 017553 29 LQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING 108 (369)
Q Consensus 29 ~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg 108 (369)
+....-....+.++| +|++++.++++.-.||.....+....- .-...+|. +.++ +|+-..++
T Consensus 28 lg~~~~~p~~ls~np----ngr~v~V~g~geY~iyt~~~~r~k~~G----------~g~~~vw~--~~n~--yAv~~~~~ 89 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNP----NGRFVLVCGDGEYEIYTALAWRNKAFG----------SGLSFVWS--SRNR--YAVLESSS 89 (443)
T ss_dssp EEE-SS--SEEEE-T----TSSEEEEEETTEEEEEETTTTEEEEEE----------E-SEEEE---TSSE--EEEE-TTS
T ss_pred CCCCCcCCeeEEECC----CCCEEEEEcCCEEEEEEccCCcccccC----------ceeEEEEe--cCcc--EEEEECCC
Confidence 334555688999999 689999988888888873333332211 22236666 6665 66666688
Q ss_pred eEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCce
Q 017553 109 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY 188 (369)
Q Consensus 109 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 188 (369)
+|.++.--+.+....+... ..+..|-. |.+|...+.+ .|.+||+++++.++.+. .. +|..+.|++ ++.
T Consensus 90 ~I~I~kn~~~~~~k~i~~~-~~~~~If~----G~LL~~~~~~-~i~~yDw~~~~~i~~i~----v~-~vk~V~Ws~-~g~ 157 (443)
T PF04053_consen 90 TIKIYKNFKNEVVKSIKLP-FSVEKIFG----GNLLGVKSSD-FICFYDWETGKLIRRID----VS-AVKYVIWSD-DGE 157 (443)
T ss_dssp -EEEEETTEE-TT-----S-S-EEEEE-----SSSEEEEETT-EEEEE-TTT--EEEEES----S--E-EEEEE-T-TSS
T ss_pred eEEEEEcCccccceEEcCC-cccceEEc----CcEEEEECCC-CEEEEEhhHcceeeEEe----cC-CCcEEEEEC-CCC
Confidence 9999754444444444422 22333432 5666666554 89999999999999986 33 489999998 788
Q ss_pred EEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeeeCcEEEEeecCCeEEEecCC
Q 017553 189 RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPK 268 (369)
Q Consensus 189 ~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~ 268 (369)
+++..+.+ .+.+++........ .+.............-...|.+..|.++.++-.... .++. +.
T Consensus 158 ~val~t~~-~i~il~~~~~~~~~------------~~~~g~e~~f~~~~E~~~~IkSg~W~~d~fiYtT~~-~lkY--l~ 221 (443)
T PF04053_consen 158 LVALVTKD-SIYILKYNLEAVAA------------IPEEGVEDAFELIHEISERIKSGCWVEDCFIYTTSN-HLKY--LV 221 (443)
T ss_dssp EEEEE-S--SEEEEEE-HHHHHH------------BTTTB-GGGEEEEEEE-S--SEEEEETTEEEEE-TT-EEEE--EE
T ss_pred EEEEEeCC-eEEEEEecchhccc------------ccccCchhceEEEEEecceeEEEEEEcCEEEEEcCC-eEEE--EE
Confidence 78777654 67777655420000 000001112223333356788899988766665555 6666 33
Q ss_pred CCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEcc
Q 017553 269 MKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ 321 (369)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~ 321 (369)
.++ ...+..+ ..++.-+.+.+..+ .+.....|+.|..+.+.
T Consensus 222 ~Ge-------~~~i~~l---d~~~yllgy~~~~~--~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 222 NGE-------TGIIAHL---DKPLYLLGYLPKEN--RLYLIDRDGNVISYELD 262 (443)
T ss_dssp TTE-------EEEEEE----SS--EEEEEETTTT--EEEEE-TT--EEEEE--
T ss_pred cCC-------cceEEEc---CCceEEEEEEccCC--EEEEEECCCCEEEEEEC
Confidence 332 1123332 23455555666443 56666677777766654
No 323
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.68 E-value=1.1e-05 Score=68.61 Aligned_cols=88 Identities=17% Similarity=0.220 Sum_probs=69.0
Q ss_pred EEEEcCCccc----cceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCC
Q 017553 111 RVIDVSNEKL----HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSD 186 (369)
Q Consensus 111 ~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 186 (369)
.+|+....+. +..+ .....|.+++++| +...++.|+.||+|.+||...+..... + ..-.++.++|+| +
T Consensus 239 ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp-~E~kLvlGC~DgSiiLyD~~~~~t~~~-k----a~~~P~~iaWHp-~ 310 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSI-PLPSQVICCARSP-SEDKLVLGCEDGSIILYDTTRGVTLLA-K----AEFIPTLIAWHP-D 310 (545)
T ss_pred EEEEeecCceeEEEEEEE-ecCCcceEEecCc-ccceEEEEecCCeEEEEEcCCCeeeee-e----ecccceEEEEcC-C
Confidence 4566654432 1222 3667899999999 889999999999999999876643332 2 455678999999 9
Q ss_pred ceEEEEEeeCCcEEEEEccC
Q 017553 187 IYRIASCGMDNTVKIWSMKE 206 (369)
Q Consensus 187 ~~~l~~~~~d~~v~i~d~~~ 206 (369)
+.++++|+..|.+.+||+.-
T Consensus 311 gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 311 GAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred CcEEEEEcCCceEEEEEeec
Confidence 99999999999999999986
No 324
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.65 E-value=2.8e-08 Score=87.54 Aligned_cols=165 Identities=14% Similarity=0.165 Sum_probs=116.2
Q ss_pred cceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCcc
Q 017553 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIP 99 (369)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~ 99 (369)
..|+..++++.|+..-+|++|+- +.+.|+.|+-.+ |++|++.+|....... .|...|+-+.-+ .+|..
T Consensus 1089 SRFr~w~~frd~~~~fTc~afs~----~~~hL~vG~~~Geik~~nv~sG~~e~s~n-----cH~SavT~vePs--~dgs~ 1157 (1516)
T KOG1832|consen 1089 SRFRSWRSFRDETALFTCIAFSG----GTNHLAVGSHAGEIKIFNVSSGSMEESVN-----CHQSAVTLVEPS--VDGST 1157 (1516)
T ss_pred hhcccchhhhccccceeeEEeec----CCceEEeeeccceEEEEEccCcccccccc-----cccccccccccc--CCcce
Confidence 46778888999999999999998 568999999888 9999999998877777 467777766544 78884
Q ss_pred EEEEeecCC-eEEEEEcCC-ccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEee-ccCCCCCc
Q 017553 100 FLVAGGING-IIRVIDVSN-EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFA-GAGGHRNE 176 (369)
Q Consensus 100 ~l~~~~~dg-~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~~~~ 176 (369)
.|.+++... ...+|++.+ +...+++. .-.++.|+. ....-+.|..-....+||++++..+.++. ...+....
T Consensus 1158 ~Ltsss~S~PlsaLW~~~s~~~~~Hsf~----ed~~vkFsn-~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~ 1232 (1516)
T KOG1832|consen 1158 QLTSSSSSSPLSALWDASSTGGPRHSFD----EDKAVKFSN-SLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYS 1232 (1516)
T ss_pred eeeeccccCchHHHhccccccCcccccc----ccceeehhh-hHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhh
Confidence 444444443 578999864 34455554 346788887 33333444544678999999998776633 11122334
Q ss_pred EEEEEecCCCceEEEEEeeCCcEEEEEccCc
Q 017553 177 VLSVDFHPSDIYRIASCGMDNTVKIWSMKEF 207 (369)
Q Consensus 177 v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~ 207 (369)
-++..|+| ...+++ .|| .+||.+..
T Consensus 1233 ~n~a~FsP-~D~LIl---ndG--vLWDvR~~ 1257 (1516)
T KOG1832|consen 1233 NNLAHFSP-CDTLIL---NDG--VLWDVRIP 1257 (1516)
T ss_pred ccccccCC-CcceEe---eCc--eeeeeccH
Confidence 47788999 666665 455 47999983
No 325
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.59 E-value=0.00011 Score=64.81 Aligned_cols=283 Identities=13% Similarity=0.069 Sum_probs=145.7
Q ss_pred cEEEEecCCc-EEEEEecCCceeEEEeeecc-CCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeecc
Q 017553 50 NVFATVGGNR-VTVYQCLEGGVIAALQSYVD-EDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGH 127 (369)
Q Consensus 50 ~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 127 (369)
..+..++.++ |.-.|..+|+.+-....... ......+..-.... .++. .++.++.+|.|+.+|.++++.+.++...
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~-~~~~-~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAY-WDPR-KVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEE-ccCC-eEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 3444454445 88899988887766543211 00000000000010 1213 6888888999999999999988776543
Q ss_pred ccc--eEEEEecCC-CCceEEEEe---------CCCcEEEEEccCCcEEEEeeccCCCC-----------------CcE-
Q 017553 128 GDS--INEIRTQPL-KPSLVVSAS---------KDESVRLWNVQTGICILIFAGAGGHR-----------------NEV- 177 (369)
Q Consensus 128 ~~~--v~~~~~~~~-~~~~l~s~~---------~dg~i~vwd~~~~~~~~~~~~~~~~~-----------------~~v- 177 (369)
... -..+.-+|. .+.+++.++ .++.+.-+|..+|+.+..+....... ..+
T Consensus 140 ~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw 219 (488)
T cd00216 140 DQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSW 219 (488)
T ss_pred CCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCcc
Confidence 221 001111110 123444443 36889999999999988876311000 001
Q ss_pred EEEEecCCCceEEEEEeeCC------------------cEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccC
Q 017553 178 LSVDFHPSDIYRIASCGMDN------------------TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH 239 (369)
Q Consensus 178 ~~~~~~~~~~~~l~~~~~d~------------------~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (369)
...++.+ .+..++.++.++ .|.-+|..+++..-......... ......
T Consensus 220 ~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~-------------~~~~~~ 285 (488)
T cd00216 220 ASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDL-------------WDYDGP 285 (488)
T ss_pred CCeeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCC-------------cccccC
Confidence 1233443 345566666554 68888888865443322110000 000000
Q ss_pred CC-ceeee-eeeCc---EEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEE------
Q 017553 240 SN-YVDCN-RWLGD---FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAI------ 308 (369)
Q Consensus 240 ~~-~v~~~-~~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~------ 308 (369)
.. .+..+ ..++. .++.++.+|.+..+|.++++. +-..... ...++.+| + .+..
T Consensus 286 s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~---------~W~~~~~---~~~~~~~~-~---~vyv~~~~~~ 349 (488)
T cd00216 286 NQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKL---------ISARPEV---EQPMAYDP-G---LVYLGAFHIP 349 (488)
T ss_pred CCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcE---------eeEeEee---ccccccCC-c---eEEEcccccc
Confidence 00 01111 12232 677888899999999999874 2111110 01122233 1 2222
Q ss_pred ------------ecCCCeEEEEEccCCCceeEEEeecCCCc------cce--EEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 309 ------------GNREGKIFVWELQSSPPVLIARLSHAQSK------SPI--RQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 309 ------------~~~dg~i~i~d~~~~~~~~~~~~~~~~~~------~~v--~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
...+|.+.-.|+.+++..-..... .+. .+. ..+.. .+.+|+.++.||.|+.+|..+
T Consensus 350 ~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~--~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~t 425 (488)
T cd00216 350 LGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREG--TIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATT 425 (488)
T ss_pred ccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCC--ccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCC
Confidence 234688999999998643333322 111 111 11222 456888888999999988754
No 326
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.58 E-value=0.00014 Score=62.29 Aligned_cols=71 Identities=15% Similarity=0.204 Sum_probs=59.3
Q ss_pred CCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecC
Q 017553 289 ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 289 ~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 367 (369)
...+.+++++|+.+ .++.|+.||.|.+||...+..... ...-.++.++|+|+|.++++|+..|.+.+||+.
T Consensus 259 ~s~v~~ca~sp~E~--kLvlGC~DgSiiLyD~~~~~t~~~------ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 259 PSQVICCARSPSED--KLVLGCEDGSIILYDTTRGVTLLA------KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred CCcceEEecCcccc--eEEEEecCCeEEEEEcCCCeeeee------eecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 46788999999996 899999999999999987632211 222457899999999999999999999999975
No 327
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.58 E-value=0.00011 Score=62.35 Aligned_cols=255 Identities=10% Similarity=0.032 Sum_probs=126.8
Q ss_pred ceeEEEeeecCCCccEEEEeecCCeEEEEEcCCcccc-------------------------------------------
Q 017553 85 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLH------------------------------------------- 121 (369)
Q Consensus 85 ~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~------------------------------------------- 121 (369)
.|..++++ ++.. -|++|...|.|.+|.+...+..
T Consensus 3 ~v~~vs~a--~~t~-Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~ 79 (395)
T PF08596_consen 3 SVTHVSFA--PETL-ELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPL 79 (395)
T ss_dssp -EEEEEEE--TTTT-EEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEE
T ss_pred eEEEEEec--CCCc-eEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCch
Confidence 35556666 7655 6999999999999876332110
Q ss_pred ceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccC-----CCCCcEEEEEecC----CC---ceE
Q 017553 122 KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAG-----GHRNEVLSVDFHP----SD---IYR 189 (369)
Q Consensus 122 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-----~~~~~v~~~~~~~----~~---~~~ 189 (369)
..+....++|++++.+ +-.+++.|..+|.+.|.|++....+..-.... .....|+++.|.- ++ .-.
T Consensus 80 ~l~~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~ 157 (395)
T PF08596_consen 80 TLLDAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSIC 157 (395)
T ss_dssp EEE---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEE
T ss_pred hheeccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceE
Confidence 0111235789999987 46789999999999999998777776633211 1334678888852 12 257
Q ss_pred EEEEeeCCcEEEEEccC-ceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeee-------e----CcEEEEee
Q 017553 190 IASCGMDNTVKIWSMKE-FWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW-------L----GDFILSKS 257 (369)
Q Consensus 190 l~~~~~d~~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~----~~~l~~~~ 257 (369)
+++|...|.+.+|.+.- ........+.... .... .....+..+....+ ..+.+- . -..++...
T Consensus 158 L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~--~~~~--~~i~~I~~i~~~~G-~~a~At~~~~~~l~~g~~i~g~vVvv 232 (395)
T PF08596_consen 158 LLVGTNSGNVLTFKILPSSNGRFSVQFAGAT--TNHD--SPILSIIPINADTG-ESALATISAMQGLSKGISIPGYVVVV 232 (395)
T ss_dssp EEEEETTSEEEEEEEEE-GGG-EEEEEEEEE----SS------EEEEEETTT---B-B-BHHHHHGGGGT----EEEEEE
T ss_pred EEEEeCCCCEEEEEEecCCCCceEEEEeecc--ccCC--CceEEEEEEECCCC-CcccCchhHhhccccCCCcCcEEEEE
Confidence 88899999999998863 1111111111000 0000 00000111111100 011110 0 11344555
Q ss_pred cCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEee---cCCccEEEEecCCCeEEEEEccCCCceeEEEeecC
Q 017553 258 VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSC---DFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHA 334 (369)
Q Consensus 258 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~---~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 334 (369)
.+..++++.+.+.+. ..+..........+.+-+ ......|++-..+|.|++|.+..-+......+...
T Consensus 233 Se~~irv~~~~~~k~---------~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~ 303 (395)
T PF08596_consen 233 SESDIRVFKPPKSKG---------AHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPP 303 (395)
T ss_dssp -SSEEEEE-TT---E---------EEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS-
T ss_pred cccceEEEeCCCCcc---------cceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCc
Confidence 678899999887652 222221112223334421 11124788888999999999998854444444322
Q ss_pred CCccceEEEEecCCCCEEEEeecC
Q 017553 335 QSKSPIRQTAMSYDGSTILSCCED 358 (369)
Q Consensus 335 ~~~~~v~~~~~s~~~~~l~s~~~d 358 (369)
.+...+....++++|..++-.+..
T Consensus 304 ~d~~~~~~ssis~~Gdi~~~~gps 327 (395)
T PF08596_consen 304 LDSRRLSSSSISRNGDIFYWTGPS 327 (395)
T ss_dssp --HHHHTT-EE-TTS-EEEE-SSS
T ss_pred cccccccccEECCCCCEEEEeCcc
Confidence 233445667788999988766543
No 328
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.56 E-value=6.1e-06 Score=73.05 Aligned_cols=108 Identities=16% Similarity=0.227 Sum_probs=81.0
Q ss_pred EEEEEeeccCCCccEEEEec----CCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEE
Q 017553 37 YAVVFNFIDSRYFNVFATVG----GNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIR 111 (369)
Q Consensus 37 ~~~~~s~~~~~~~~~la~~~----~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~ 111 (369)
+-..|+| ...+||+++ .++ |.||- .+|++-....- .-.+.+++|. |..- .|+.|-.-|.+.
T Consensus 19 ti~SWHP----sePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~------P~hatSLCWH--pe~~-vLa~gwe~g~~~ 84 (1416)
T KOG3617|consen 19 TISSWHP----SEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY------PVHATSLCWH--PEEF-VLAQGWEMGVSD 84 (1416)
T ss_pred cccccCC----CCceeEEEEecCCCCceEEEEe-cCCCCCccccc------ceehhhhccC--hHHH-HHhhccccceeE
Confidence 3456888 456777775 233 88886 66664332221 1123447777 7766 889999999999
Q ss_pred EEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEcc
Q 017553 112 VIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 159 (369)
Q Consensus 112 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~ 159 (369)
+|...+.+.......|..+|..+.|++ +++.++++..-|.|.+|...
T Consensus 85 v~~~~~~e~htv~~th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 85 VQKTNTTETHTVVETHPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred EEecCCceeeeeccCCCCCceeEEecC-CCCeEEEcCCCceeEEEEee
Confidence 999877776666667999999999999 99999999999999999875
No 329
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=2.9e-05 Score=68.94 Aligned_cols=203 Identities=11% Similarity=0.090 Sum_probs=123.0
Q ss_pred ecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCc-EEEEEecCCCceEEEEEeeCCc-----EEEEEccCcee
Q 017553 136 TQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNE-VLSVDFHPSDIYRIASCGMDNT-----VKIWSMKEFWT 209 (369)
Q Consensus 136 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~d~~-----v~i~d~~~~~~ 209 (369)
|++ ++..++.|+.+|.|.+.+-. -+.++.++ .+... |..+.... ..++|++.+.|+. +++|+++..+.
T Consensus 31 ~~s-~~~~vvigt~~G~V~~Ln~s-~~~~~~fq---a~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~ 104 (933)
T KOG2114|consen 31 CSS-STGSVVIGTADGRVVILNSS-FQLIRGFQ---AYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDK 104 (933)
T ss_pred EcC-CCceEEEeeccccEEEeccc-ceeeehhe---ecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCC
Confidence 456 77899999999999888742 33345565 56666 54444443 5578888877754 89999987321
Q ss_pred eeeeeeeccCCCCCCCCceeecceee--eccCCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeec
Q 017553 210 YVEKSFTWTDLPSKFPTKYVQFPVFI--ASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY 285 (369)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 285 (369)
... +.-.....+.. .+..+.++.+++.+ -+.+++|-.+|.|..+.-.-.+... ....-.
T Consensus 105 n~s------------P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrg-----sr~~~~ 167 (933)
T KOG2114|consen 105 NNS------------PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRG-----SRQDYS 167 (933)
T ss_pred CCC------------cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccc-----cceeee
Confidence 100 00000001111 11234556666665 5688999999999998643222110 012222
Q ss_pred cCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEe
Q 017553 286 PVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 365 (369)
Q Consensus 286 ~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~ 365 (369)
.....+|+.+++..++... +.+++ ...|.+|.+.... .....+. .|...+.|..+++....+++|+. ..+++|+
T Consensus 168 ~~~~~pITgL~~~~d~~s~-lFv~T-t~~V~~y~l~gr~-p~~~~ld--~~G~~lnCss~~~~t~qfIca~~-e~l~fY~ 241 (933)
T KOG2114|consen 168 HRGKEPITGLALRSDGKSV-LFVAT-TEQVMLYSLSGRT-PSLKVLD--NNGISLNCSSFSDGTYQFICAGS-EFLYFYD 241 (933)
T ss_pred ccCCCCceeeEEecCCcee-EEEEe-cceeEEEEecCCC-cceeeec--cCCccceeeecCCCCccEEEecC-ceEEEEc
Confidence 2335789999999999732 33333 3579999998543 2344455 66688999999876654655554 4588887
Q ss_pred cC
Q 017553 366 AI 367 (369)
Q Consensus 366 ~~ 367 (369)
..
T Consensus 242 sd 243 (933)
T KOG2114|consen 242 SD 243 (933)
T ss_pred CC
Confidence 54
No 330
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.46 E-value=0.00019 Score=62.64 Aligned_cols=135 Identities=15% Similarity=0.128 Sum_probs=89.6
Q ss_pred CccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccce---
Q 017553 48 YFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKS--- 123 (369)
Q Consensus 48 ~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~--- 123 (369)
.+++++.|+.-+ +++|+-..+... .++. +...+.+..++.+ ++.. ++|+|+..|.|.++-+..+.+...
T Consensus 44 t~~~l~~GsS~G~lyl~~R~~~~~~-~~~~---~~~~~~~~~~~vs--~~e~-lvAagt~~g~V~v~ql~~~~p~~~~~~ 116 (726)
T KOG3621|consen 44 TEEYLAMGSSAGSVYLYNRHTGEMR-KLKN---EGATGITCVRSVS--SVEY-LVAAGTASGRVSVFQLNKELPRDLDYV 116 (726)
T ss_pred CCceEEEecccceEEEEecCchhhh-cccc---cCccceEEEEEec--chhH-hhhhhcCCceEEeehhhccCCCcceee
Confidence 468999998888 999995554433 2221 1222333333333 6665 899999999999998876432211
Q ss_pred --e-eccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCc----EEEEeeccCCCCCcEEEEEecCCCceEEEEEee
Q 017553 124 --F-VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI----CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM 195 (369)
Q Consensus 124 --~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 195 (369)
. +.|...|++++|++ ++..+++|...|.|..-.+.... ..+.+. .-...|-.+.+. ...+|++...
T Consensus 117 t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il---~~ds~IVQlD~~--q~~LLVStl~ 189 (726)
T KOG3621|consen 117 TPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEIL---SEDSEIVQLDYL--QSYLLVSTLT 189 (726)
T ss_pred ccccccCCceEEEEEecc-cccEEeecCCCceEEEEEechhhhhccccceee---ccCcceEEeecc--cceehHhhhh
Confidence 1 23778999999999 99999999999999998887621 112222 355678788876 4555554443
No 331
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.44 E-value=4.9e-05 Score=50.46 Aligned_cols=104 Identities=14% Similarity=0.152 Sum_probs=74.4
Q ss_pred eeEEEee-ecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEE
Q 017553 86 FYTVSWA-CNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICI 164 (369)
Q Consensus 86 v~~~~~~-~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 164 (369)
|.++++. +..+|..-|++|+.|..||+|+- .+.+.++.. .+.|+++.-.. ...++.+-.+|+|-+|+- ...+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~--~~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLG--GGRFAYALANGTVGVYDR--SQRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcC--CCEEEEEecCCEEEEEeC--ccee
Confidence 4455554 44677779999999999999983 466777764 45677887776 367999999999999985 4455
Q ss_pred EEeeccCCCCCcEEEEEecC---CCceEEEEEeeCCcEE
Q 017553 165 LIFAGAGGHRNEVLSVDFHP---SDIYRIASCGMDNTVK 200 (369)
Q Consensus 165 ~~~~~~~~~~~~v~~~~~~~---~~~~~l~~~~~d~~v~ 200 (369)
+..+ .+..+.++++.. ++-..|++|-.+|.|-
T Consensus 75 WRiK----SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WRIK----SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeec----cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 6665 334467776653 2234688888888764
No 332
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.44 E-value=8.5e-08 Score=81.55 Aligned_cols=192 Identities=15% Similarity=0.200 Sum_probs=121.2
Q ss_pred cccccccccccccccccceeeeeecccCCcCeEEEEEeeccCCCccEEEEecC----Cc-EEEEEecCCc--eeEEEeee
Q 017553 5 AIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGG----NR-VTVYQCLEGG--VIAALQSY 77 (369)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~----~~-v~iw~~~~~~--~~~~~~~~ 77 (369)
|+|.......+.....+...-.....+|....++++|++.| .+.||.|-+ +. +.|||+.++- +.......
T Consensus 74 avG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLD---tn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs 150 (783)
T KOG1008|consen 74 AVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELD---TNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFS 150 (783)
T ss_pred hhccccCceEEeecCCcccccceeccccccccccccccccc---HHHHHhhhhhhcccCCccceecccccCCCccccccc
Confidence 33444444444333333333334457889999999999963 678888743 23 9999988762 22221111
Q ss_pred ccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEE
Q 017553 78 VDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN 157 (369)
Q Consensus 78 ~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd 157 (369)
. .......+++|. .+.+ ++.+|.....+.++|++... .....-.+..+..+...|..++++++-. ||.|.+||
T Consensus 151 -~-~~l~gqns~cwl--rd~k-lvlaGm~sr~~~ifdlRqs~-~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD 223 (783)
T KOG1008|consen 151 -S-STLDGQNSVCWL--RDTK-LVLAGMTSRSVHIFDLRQSL-DSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWD 223 (783)
T ss_pred -c-ccccCccccccc--cCcc-hhhcccccchhhhhhhhhhh-hhhhhhhhhhcccceecCCCCCceeccc-cCceeecc
Confidence 1 244556678887 6666 88999988899999987332 1111223456777888887778887766 89999999
Q ss_pred -ccCC-cEEEEeec-cCCCCCcEEEEEecCCCceEEEEEeeC-CcEEEEEccC
Q 017553 158 -VQTG-ICILIFAG-AGGHRNEVLSVDFHPSDIYRIASCGMD-NTVKIWSMKE 206 (369)
Q Consensus 158 -~~~~-~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~d-~~v~i~d~~~ 206 (369)
.+.- .++..+.. .......+..++|.|....++++...| ++|+++|+..
T Consensus 224 ~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 224 TYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred chhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 3322 22222220 001223489999999666777777765 5899999986
No 333
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.42 E-value=0.00038 Score=61.18 Aligned_cols=274 Identities=14% Similarity=0.064 Sum_probs=148.0
Q ss_pred EEEecCCc-EEEEEecCCceeEEEeeeccCCc--------cccee---------------EEEeeec---CCCccEEEEe
Q 017553 52 FATVGGNR-VTVYQCLEGGVIAALQSYVDEDK--------EESFY---------------TVSWACN---VDGIPFLVAG 104 (369)
Q Consensus 52 la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~--------~~~v~---------------~~~~~~~---~~g~~~l~~~ 104 (369)
|.+|+..+ |+|+-+..++.+..+..+....- ...|. ...+++. -||+ +|+.-
T Consensus 69 f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr-~~fin 147 (635)
T PRK02888 69 FWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGR-YLFIN 147 (635)
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCcccee-EEEEe
Confidence 44555555 99999999988888776653211 11111 0111111 2566 55554
Q ss_pred e-cCCeEEEEEcCCccccceeec-cccceEEEE-------------------ecCCCCceEE-EEeCCCcEEEEEccCCc
Q 017553 105 G-INGIIRVIDVSNEKLHKSFVG-HGDSINEIR-------------------TQPLKPSLVV-SASKDESVRLWNVQTGI 162 (369)
Q Consensus 105 ~-~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~-------------------~~~~~~~~l~-s~~~dg~i~vwd~~~~~ 162 (369)
. .+..|-..+++..++-+.+.- ....+..++ +.| ++..+. +.-..+.+.+.|..+.+
T Consensus 148 dk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~Plpn-DGk~l~~~~ey~~~vSvID~etme 226 (635)
T PRK02888 148 DKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPN-DGKDLDDPKKYRSLFTAVDAETME 226 (635)
T ss_pred cCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCC-CCCEeecccceeEEEEEEECccce
Confidence 4 355565566555443222210 112222222 233 333332 22234567777887777
Q ss_pred EEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCC----cEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeecc
Q 017553 163 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN----TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV 238 (369)
Q Consensus 163 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~----~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (369)
....+. -.+....++++| ++.++++.+.+. ++...+..... . ... .
T Consensus 227 V~~qV~----Vdgnpd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d--~---------------------~vv--f 276 (635)
T PRK02888 227 VAWQVM----VDGNLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERD--W---------------------VVV--F 276 (635)
T ss_pred EEEEEE----eCCCcccceECC-CCCEEEEeccCcccCcceeeeccccCc--e---------------------EEE--E
Confidence 766665 333456678888 666666554321 22222221100 0 000 0
Q ss_pred CCCceeeeeeeCcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEE
Q 017553 239 HSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW 318 (369)
Q Consensus 239 ~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~ 318 (369)
....+..+.-+|++... .++.|.+.|.++.... ....+..++. ....+.+.++||+++ +++++..++.|.|+
T Consensus 277 ni~~iea~vkdGK~~~V--~gn~V~VID~~t~~~~----~~~v~~yIPV-GKsPHGV~vSPDGky-lyVanklS~tVSVI 348 (635)
T PRK02888 277 NIARIEEAVKAGKFKTI--GGSKVPVVDGRKAANA----GSALTRYVPV-PKNPHGVNTSPDGKY-FIANGKLSPTVTVI 348 (635)
T ss_pred chHHHHHhhhCCCEEEE--CCCEEEEEECCccccC----CcceEEEEEC-CCCccceEECCCCCE-EEEeCCCCCcEEEE
Confidence 00111111113665554 3678999998871000 0013333333 345678999999983 56667779999999
Q ss_pred EccCCCc----------eeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 319 ELQSSPP----------VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 319 d~~~~~~----------~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
|+.+.+. ....+.+. .......+|.++|....|-.-|..|-.||+..
T Consensus 349 Dv~k~k~~~~~~~~~~~~vvaevev---GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 349 DVRKLDDLFDGKIKPRDAVVAEPEL---GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EChhhhhhhhccCCccceEEEeecc---CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 9988542 12333331 13345689999999888888999999999863
No 334
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.42 E-value=2e-07 Score=82.40 Aligned_cols=197 Identities=13% Similarity=0.142 Sum_probs=125.5
Q ss_pred cccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCC-
Q 017553 119 KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN- 197 (369)
Q Consensus 119 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~- 197 (369)
+..++|+.|+...+|++|+- +.+.|+.|+..|.|+++++.+|....... .|...|+.+.-+. ++.++++.+.-.
T Consensus 1092 r~w~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~n---cH~SavT~vePs~-dgs~~Ltsss~S~ 1166 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVN---CHQSAVTLVEPSV-DGSTQLTSSSSSS 1166 (1516)
T ss_pred ccchhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCcccccccc---ccccccccccccC-CcceeeeeccccC
Confidence 34567778889999999999 88999999999999999999999888877 7999999999887 666665554433
Q ss_pred -cEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCC
Q 017553 198 -TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSP 274 (369)
Q Consensus 198 -~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~ 274 (369)
...+|++..- ..+.+.+ ..-.++.|+ -+.-+.|.......+||+.+.....
T Consensus 1167 PlsaLW~~~s~----------------------~~~~Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~ 1220 (1516)
T KOG1832|consen 1167 PLSALWDASST----------------------GGPRHSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQ 1220 (1516)
T ss_pred chHHHhccccc----------------------cCccccc----cccceeehhhhHHHHHhcccccceEEEecccCcHHH
Confidence 4678998761 1112111 122445554 2233444445678899999886311
Q ss_pred CCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEE
Q 017553 275 GEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILS 354 (369)
Q Consensus 275 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 354 (369)
. .+.......-.-+.+.|+|+.. +++ .|| .+||++..+ .+..+.. .. --..=.|+|.|.-++.
T Consensus 1221 t-----ylt~~~~~~y~~n~a~FsP~D~--LIl---ndG--vLWDvR~~~--aIh~FD~--ft-~~~~G~FHP~g~eVII 1283 (1516)
T KOG1832|consen 1221 T-----YLTDTVTSSYSNNLAHFSPCDT--LIL---NDG--VLWDVRIPE--AIHRFDQ--FT-DYGGGGFHPSGNEVII 1283 (1516)
T ss_pred H-----hcCcchhhhhhccccccCCCcc--eEe---eCc--eeeeeccHH--HHhhhhh--he-ecccccccCCCceEEe
Confidence 1 0111111112235678999885 443 345 379998763 3333331 11 1112358888887776
Q ss_pred eecCCeEEEEecCC
Q 017553 355 CCEDGAIWRWDAIP 368 (369)
Q Consensus 355 ~~~dg~i~vw~~~~ 368 (369)
-+ -|||+++
T Consensus 1284 NS-----EIwD~RT 1292 (1516)
T KOG1832|consen 1284 NS-----EIWDMRT 1292 (1516)
T ss_pred ec-----hhhhhHH
Confidence 65 3676653
No 335
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.41 E-value=1.4e-05 Score=70.81 Aligned_cols=108 Identities=9% Similarity=0.157 Sum_probs=82.5
Q ss_pred EEeeecCCCccEEEEee----cCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEE
Q 017553 89 VSWACNVDGIPFLVAGG----INGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICI 164 (369)
Q Consensus 89 ~~~~~~~~g~~~l~~~~----~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 164 (369)
.+|. |... ++++++ ..|.|.||- ++|++-+... ..-.+++++|+| ..-.|+.|-.-|.+.+|...+.+.-
T Consensus 21 ~SWH--PseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHp-e~~vLa~gwe~g~~~v~~~~~~e~h 94 (1416)
T KOG3617|consen 21 SSWH--PSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHP-EEFVLAQGWEMGVSDVQKTNTTETH 94 (1416)
T ss_pred cccC--CCCc-eeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccCh-HHHHHhhccccceeEEEecCCceee
Confidence 5565 5554 777664 458899986 6777544332 223366799999 7788899999999999998765544
Q ss_pred EEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccC
Q 017553 165 LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206 (369)
Q Consensus 165 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~ 206 (369)
.... .|..+|..+.|+| +|..++++..-|.|.+|....
T Consensus 95 tv~~---th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 95 TVVE---THPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred eecc---CCCCCceeEEecC-CCCeEEEcCCCceeEEEEeee
Confidence 4444 6999999999999 889999999999999998873
No 336
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.40 E-value=0.00067 Score=55.06 Aligned_cols=260 Identities=11% Similarity=0.034 Sum_probs=137.9
Q ss_pred EEEEeeccCCCccEEEEecC-----------CcEEEEEecCCceeEEEeeecc-CC-cccceeEEEeeecCCCccEEEEe
Q 017553 38 AVVFNFIDSRYFNVFATVGG-----------NRVTVYQCLEGGVIAALQSYVD-ED-KEESFYTVSWACNVDGIPFLVAG 104 (369)
Q Consensus 38 ~~~~s~~~~~~~~~la~~~~-----------~~v~iw~~~~~~~~~~~~~~~~-~~-~~~~v~~~~~~~~~~g~~~l~~~ 104 (369)
.+..+| +++.++++.. |-|.+||..+......+.-... .. .....+..++ +.||+ +++..
T Consensus 40 ~~~~sp----dgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~l--s~dgk-~~~V~ 112 (342)
T PF06433_consen 40 NVALSP----DGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFAL--SADGK-FLYVQ 112 (342)
T ss_dssp EEEE-T----TSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE---TTSS-EEEEE
T ss_pred ceeECC----CCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEE--ccCCc-EEEEE
Confidence 466788 5777776531 1299999998887776654321 00 0111122333 37888 66655
Q ss_pred e--cCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEcc-CCcEEEEeec-cCCCCCcEE-E
Q 017553 105 G--INGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ-TGICILIFAG-AGGHRNEVL-S 179 (369)
Q Consensus 105 ~--~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~-~~~~~~~v~-~ 179 (369)
. ---.|.|-|+..++.+.++.. .+... ..|..+.-|.+-+.||++.-..+. .|+....... +....+++. .
T Consensus 113 N~TPa~SVtVVDl~~~kvv~ei~~-PGC~~---iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~ 188 (342)
T PF06433_consen 113 NFTPATSVTVVDLAAKKVVGEIDT-PGCWL---IYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEH 188 (342)
T ss_dssp EESSSEEEEEEETTTTEEEEEEEG-TSEEE---EEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S-
T ss_pred ccCCCCeEEEEECCCCceeeeecC-CCEEE---EEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccc
Confidence 3 335688889888887777652 23222 223344568888999999999987 5555433221 111222232 3
Q ss_pred EEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEee
Q 017553 180 VDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS 257 (369)
Q Consensus 180 ~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~ 257 (369)
-++.. .+..++--+.+|.|+--|+.................. ......++.-.-++++ .+.|++-.
T Consensus 189 ~~~~~-~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e-----------~~~~WrPGG~Q~~A~~~~~~rlyvLM 256 (342)
T PF06433_consen 189 PAYSR-DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAE-----------KADGWRPGGWQLIAYHAASGRLYVLM 256 (342)
T ss_dssp -EEET-TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHH-----------HHTTEEE-SSS-EEEETTTTEEEEEE
T ss_pred cceEC-CCCeEEEEecCCEEEEEeccCCcccccCcccccCccc-----------cccCcCCcceeeeeeccccCeEEEEe
Confidence 33443 3444555778999999998875433322221110000 0000111111222332 22222221
Q ss_pred --------cCC--eEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCcee
Q 017553 258 --------VDN--EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVL 327 (369)
Q Consensus 258 --------~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 327 (369)
.|+ .|=++|+.+.+ .+.+++.. ..+.++..+.+.+..+++....++.+.+||..++ +.
T Consensus 257 h~g~~gsHKdpgteVWv~D~~t~k---------rv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG--k~ 324 (342)
T PF06433_consen 257 HQGGEGSHKDPGTEVWVYDLKTHK---------RVARIPLE-HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG--KL 324 (342)
T ss_dssp EE--TT-TTS-EEEEEEEETTTTE---------EEEEEEEE-EEESEEEEESSSS-EEEEEETTTTEEEEEETTT----E
T ss_pred cCCCCCCccCCceEEEEEECCCCe---------EEEEEeCC-CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC--cE
Confidence 122 25566777766 56666543 4577999999888544455667899999999999 45
Q ss_pred EEEee
Q 017553 328 IARLS 332 (369)
Q Consensus 328 ~~~~~ 332 (369)
+..+.
T Consensus 325 ~~~~~ 329 (342)
T PF06433_consen 325 VRSIE 329 (342)
T ss_dssp EEEE-
T ss_pred Eeehh
Confidence 55555
No 337
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.37 E-value=0.001 Score=55.65 Aligned_cols=219 Identities=12% Similarity=0.173 Sum_probs=124.6
Q ss_pred CeEEEEEcCCccccceeecc-ccceE---EEEecCC---CCceEEEEeC----------CCcEEEEEccCC----cEEEE
Q 017553 108 GIIRVIDVSNEKLHKSFVGH-GDSIN---EIRTQPL---KPSLVVSASK----------DESVRLWNVQTG----ICILI 166 (369)
Q Consensus 108 g~i~vwd~~~~~~~~~~~~~-~~~v~---~~~~~~~---~~~~l~s~~~----------dg~i~vwd~~~~----~~~~~ 166 (369)
+.|++.|..+.+.+.++.-. ...+. .+.+... ...+|+.|.. .|.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 35788887777666554421 22333 3444431 1467777643 289999999884 22222
Q ss_pred eeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeee
Q 017553 167 FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCN 246 (369)
Q Consensus 167 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 246 (369)
+.. ....++|++++-. ++.++++ .++.|.+|++...+.. .+. ........+.++
T Consensus 82 i~~-~~~~g~V~ai~~~--~~~lv~~--~g~~l~v~~l~~~~~l--------------------~~~-~~~~~~~~i~sl 135 (321)
T PF03178_consen 82 IHS-TEVKGPVTAICSF--NGRLVVA--VGNKLYVYDLDNSKTL--------------------LKK-AFYDSPFYITSL 135 (321)
T ss_dssp EEE-EEESS-EEEEEEE--TTEEEEE--ETTEEEEEEEETTSSE--------------------EEE-EEE-BSSSEEEE
T ss_pred EEE-EeecCcceEhhhh--CCEEEEe--ecCEEEEEEccCcccc--------------------hhh-heecceEEEEEE
Confidence 211 1367899999877 4553333 3589999999984300 011 112223377777
Q ss_pred eeeCcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCC---
Q 017553 247 RWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS--- 323 (369)
Q Consensus 247 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~--- 323 (369)
...+++++.|.....+.++..+.... ....+.. ......++++.|-++++ .++++..+|.+.++.....
T Consensus 136 ~~~~~~I~vgD~~~sv~~~~~~~~~~-----~l~~va~-d~~~~~v~~~~~l~d~~--~~i~~D~~gnl~~l~~~~~~~~ 207 (321)
T PF03178_consen 136 SVFKNYILVGDAMKSVSLLRYDEENN-----KLILVAR-DYQPRWVTAAEFLVDED--TIIVGDKDGNLFVLRYNPEIPN 207 (321)
T ss_dssp EEETTEEEEEESSSSEEEEEEETTTE------EEEEEE-ESS-BEEEEEEEE-SSS--EEEEEETTSEEEEEEE-SS-SS
T ss_pred eccccEEEEEEcccCEEEEEEEccCC-----EEEEEEe-cCCCccEEEEEEecCCc--EEEEEcCCCeEEEEEECCCCcc
Confidence 77799999999988888875543210 1112222 22245578888887774 8889999999999988631
Q ss_pred ------CceeEEEeecCCCccceEEE---EecCC--CC------EEEEeecCCeEEE
Q 017553 324 ------PPVLIARLSHAQSKSPIRQT---AMSYD--GS------TILSCCEDGAIWR 363 (369)
Q Consensus 324 ------~~~~~~~~~~~~~~~~v~~~---~~s~~--~~------~l~s~~~dg~i~v 363 (369)
+......+.. ...|+++ .+.|. +. .++-++.+|.|.+
T Consensus 208 ~~~~~~~L~~~~~f~l---g~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 208 SRDGDPKLERISSFHL---GDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp TTTTTTBEEEEEEEE----SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred cccccccceeEEEEEC---CCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 1122233332 2567777 55552 22 4777888998873
No 338
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.37 E-value=0.0015 Score=57.80 Aligned_cols=158 Identities=15% Similarity=0.105 Sum_probs=89.8
Q ss_pred cEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEee---------cCCeEEEEEcCCcc
Q 017553 50 NVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG---------INGIIRVIDVSNEK 119 (369)
Q Consensus 50 ~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~---------~dg~i~vwd~~~~~ 119 (369)
..+..++.++ |.-+|..+|+.+-........ ..-..+.-++.-.+. .++.++ .+|.+..+|..+|+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~---~~~~~i~ssP~v~~~-~v~vg~~~~~~~~~~~~g~v~alD~~TG~ 186 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQV---PPGYTMTGAPTIVKK-LVIIGSSGAEFFACGVRGALRAYDVETGK 186 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCc---CcceEecCCCEEECC-EEEEeccccccccCCCCcEEEEEECCCCc
Confidence 4555555565 999999999887765532110 000001111001122 455553 36889999999998
Q ss_pred ccceeeccccc--------------------e-EEEEecCCCCceEEEEeCCC------------------cEEEEEccC
Q 017553 120 LHKSFVGHGDS--------------------I-NEIRTQPLKPSLVVSASKDE------------------SVRLWNVQT 160 (369)
Q Consensus 120 ~~~~~~~~~~~--------------------v-~~~~~~~~~~~~l~s~~~dg------------------~i~vwd~~~ 160 (369)
.+..+...... + ...++.+ ....++.++.++ .|.-+|..+
T Consensus 187 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~t 265 (488)
T cd00216 187 LLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADT 265 (488)
T ss_pred eeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCC
Confidence 87766532110 1 1233344 455677776554 799999999
Q ss_pred CcEEEEeeccCCCCC----cEEEEEec---CCCc---eEEEEEeeCCcEEEEEccCceeeeee
Q 017553 161 GICILIFAGAGGHRN----EVLSVDFH---PSDI---YRIASCGMDNTVKIWSMKEFWTYVEK 213 (369)
Q Consensus 161 ~~~~~~~~~~~~~~~----~v~~~~~~---~~~~---~~l~~~~~d~~v~i~d~~~~~~~~~~ 213 (369)
|+....++.. .|.. ......+. ..++ ..++.++.+|.+...|.++++..-..
T Consensus 266 G~~~W~~~~~-~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~ 327 (488)
T cd00216 266 GKVKWFYQTT-PHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISAR 327 (488)
T ss_pred CCEEEEeeCC-CCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEe
Confidence 9999887631 1110 00000111 0122 36778888999999999997655443
No 339
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.36 E-value=0.00089 Score=54.62 Aligned_cols=237 Identities=12% Similarity=0.039 Sum_probs=125.6
Q ss_pred CCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEee------
Q 017553 95 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFA------ 168 (369)
Q Consensus 95 ~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~------ 168 (369)
..++ .|+.|+.+| |.+++.........+. +...|..+...| +-+.|++-+ |+.++++++..-.......
T Consensus 5 ~~~~-~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 5 SWGD-RLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred cCCC-EEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEec-ccCEEEEEc-CCccEEEEchhhccccccccccccc
Confidence 3455 899999998 8999983333222322 233499999999 555555544 4999999987544333110
Q ss_pred -----ccCCCCCcEEEEE-ecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCc
Q 017553 169 -----GAGGHRNEVLSVD-FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY 242 (369)
Q Consensus 169 -----~~~~~~~~v~~~~-~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (369)
........+..++ -....+...+......+|.+|.......... ..... -.-+..
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~------------------~~~ke-~~lp~~ 140 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFS------------------KLLKE-ISLPDP 140 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccccc------------------ceeEE-EEcCCC
Confidence 0001333455555 1122344445555566899988876211000 11122 223477
Q ss_pred eeeeeeeCcEEEEeecCCeEEEecCCCCCCCCCCCccceee---eccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEE
Q 017553 243 VDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQ---KYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE 319 (369)
Q Consensus 243 v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d 319 (369)
+..+.|.++.++.+..+ ...+.|+.++............. .......++..+.... +. +|++- +..-.+.|
T Consensus 141 ~~~i~~~~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e--~Ll~~--~~~g~fv~ 214 (275)
T PF00780_consen 141 PSSIAFLGNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSD-NE--FLLCY--DNIGVFVN 214 (275)
T ss_pred cEEEEEeCCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCC-ce--EEEEe--cceEEEEc
Confidence 88899988888887754 47788888665321110000000 0000112233333332 22 55542 33344445
Q ss_pred ccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 320 LQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
.... +.....+... ..+.++++. ..+|+..+. +.|.||++.+
T Consensus 215 ~~G~-~~r~~~i~W~---~~p~~~~~~--~pyli~~~~-~~iEV~~~~~ 256 (275)
T PF00780_consen 215 KNGE-PSRKSTIQWS---SAPQSVAYS--SPYLIAFSS-NSIEVRSLET 256 (275)
T ss_pred CCCC-cCcccEEEcC---CchhEEEEE--CCEEEEECC-CEEEEEECcC
Confidence 4433 2222333322 356667774 457877665 4599999875
No 340
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.30 E-value=0.00043 Score=57.81 Aligned_cols=185 Identities=12% Similarity=0.092 Sum_probs=109.2
Q ss_pred CcEEEEEccCCcEEEEeeccCCCCCcEEEEE---ecCC---CceEEEEEee---------C-CcEEEEEccCc-eeeeee
Q 017553 151 ESVRLWNVQTGICILIFAGAGGHRNEVLSVD---FHPS---DIYRIASCGM---------D-NTVKIWSMKEF-WTYVEK 213 (369)
Q Consensus 151 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~---~~~~---~~~~l~~~~~---------d-~~v~i~d~~~~-~~~~~~ 213 (369)
..|++.|..+.+.+..+.- .....+.+++ +..+ ...+++.|.. . |.|.++++... ...
T Consensus 2 s~i~l~d~~~~~~~~~~~l--~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~--- 76 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFEL--EPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENN--- 76 (321)
T ss_dssp -EEEEEETTTSSEEEEEEE--ETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-------
T ss_pred cEEEEEeCCCCeEEEEEEC--CCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccc---
Confidence 3688888888877766553 1334455444 3321 1577777754 2 88999999883 000
Q ss_pred eeeccCCCCCCCCceeecceeeeccCCCceeeeeeeCcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCee
Q 017553 214 SFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIW 293 (369)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~ 293 (369)
............++|.+++..+..+++ +..+.|.+|++...+ .......+. ..+.
T Consensus 77 ---------------~~l~~i~~~~~~g~V~ai~~~~~~lv~-~~g~~l~v~~l~~~~------~l~~~~~~~---~~~~ 131 (321)
T PF03178_consen 77 ---------------FKLKLIHSTEVKGPVTAICSFNGRLVV-AVGNKLYVYDLDNSK------TLLKKAFYD---SPFY 131 (321)
T ss_dssp ----------------EEEEEEEEEESS-EEEEEEETTEEEE-EETTEEEEEEEETTS------SEEEEEEE----BSSS
T ss_pred ---------------eEEEEEEEEeecCcceEhhhhCCEEEE-eecCEEEEEEccCcc------cchhhheec---ceEE
Confidence 011112223347789998887666544 446899999998775 111222222 2223
Q ss_pred EEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 294 FIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 294 ~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
.......++ ++++|.....+.++..+... ..+..+........++++.|-++++.++.+..+|.+.++...+
T Consensus 132 i~sl~~~~~--~I~vgD~~~sv~~~~~~~~~-~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 132 ITSLSVFKN--YILVGDAMKSVSLLRYDEEN-NKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEEEEETT--EEEEEESSSSEEEEEEETTT-E-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred EEEEecccc--EEEEEEcccCEEEEEEEccC-CEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 344444443 88889888888888665432 2222222113345688999987777999999999999998764
No 341
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.26 E-value=8e-06 Score=70.75 Aligned_cols=116 Identities=15% Similarity=0.125 Sum_probs=86.2
Q ss_pred ceeeeeeeCcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEcc
Q 017553 242 YVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ 321 (369)
Q Consensus 242 ~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~ 321 (369)
..+|++-.+++++.|+.-|.+++|+-..++. ...........+..+..+++.. ++|.|+..|.|.++-+.
T Consensus 37 ~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~--------~~~~~~~~~~~~~~~~vs~~e~--lvAagt~~g~V~v~ql~ 106 (726)
T KOG3621|consen 37 KLTCVDATEEYLAMGSSAGSVYLYNRHTGEM--------RKLKNEGATGITCVRSVSSVEY--LVAAGTASGRVSVFQLN 106 (726)
T ss_pred EEEEeecCCceEEEecccceEEEEecCchhh--------hcccccCccceEEEEEecchhH--hhhhhcCCceEEeehhh
Confidence 3455555699999999999999999877653 1222222345566677788775 88999999999999988
Q ss_pred CCCceeEEEee--cCCCccceEEEEecCCCCEEEEeecCCeEEEEecC
Q 017553 322 SSPPVLIARLS--HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 322 ~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 367 (369)
...+.....+. ...|...|++++|++|+..+.+|...|.|..-.+.
T Consensus 107 ~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~ 154 (726)
T KOG3621|consen 107 KELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELD 154 (726)
T ss_pred ccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEec
Confidence 75443333333 33467899999999999999999999998776554
No 342
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.24 E-value=0.0011 Score=50.98 Aligned_cols=105 Identities=20% Similarity=0.135 Sum_probs=78.1
Q ss_pred CCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCC
Q 017553 95 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR 174 (369)
Q Consensus 95 ~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 174 (369)
++.+.+++.|+..+.+..-|..+|+.+.+-. -...|.+-+.- -+++++.|...|.+++.+..+|...+.+.. .
T Consensus 20 ~dskT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~----~ 92 (354)
T KOG4649|consen 20 NDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV--VGDFVVLGCYSGGLYFLCVKTGSQIWNFVI----L 92 (354)
T ss_pred cCCceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE--ECCEEEEEEccCcEEEEEecchhheeeeee----h
Confidence 5556689999999999999999998765433 22334333333 256799999999999999999988888773 3
Q ss_pred CcEEE-EEecCCCceEEEEEeeCCcEEEEEccCc
Q 017553 175 NEVLS-VDFHPSDIYRIASCGMDNTVKIWSMKEF 207 (369)
Q Consensus 175 ~~v~~-~~~~~~~~~~l~~~~~d~~v~i~d~~~~ 207 (369)
+.|.+ ....+ ++.++..++.|++.+..|.++.
T Consensus 93 ~~vk~~a~~d~-~~glIycgshd~~~yalD~~~~ 125 (354)
T KOG4649|consen 93 ETVKVRAQCDF-DGGLIYCGSHDGNFYALDPKTY 125 (354)
T ss_pred hhhccceEEcC-CCceEEEecCCCcEEEeccccc
Confidence 33332 23445 7789999999999999999983
No 343
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.23 E-value=0.0003 Score=62.97 Aligned_cols=225 Identities=14% Similarity=0.140 Sum_probs=125.1
Q ss_pred EEEEeecCC------eEEEEEcCCccc--cceeeccccceEEEEecCCCCceEEEEeCC------CcEEEEEccCCcEEE
Q 017553 100 FLVAGGING------IIRVIDVSNEKL--HKSFVGHGDSINEIRTQPLKPSLVVSASKD------ESVRLWNVQTGICIL 165 (369)
Q Consensus 100 ~l~~~~~dg------~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~ 165 (369)
+++.|+.++ .+..+|..+++. ...+. ....-.+++.. ++.+.++||.| .++..||..+++-..
T Consensus 287 l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~ 363 (571)
T KOG4441|consen 287 LVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP 363 (571)
T ss_pred EEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCceec
Confidence 777777763 578888877643 22333 22334455555 46788899988 367788888877433
Q ss_pred EeeccCCCCCcEEEEEecCCCceEEEEEeeCCc-----EEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCC
Q 017553 166 IFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNT-----VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 240 (369)
Q Consensus 166 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~-----v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (369)
+..+.... .-.+++.. ++.+.++||.||. +..||.++.+- ..+.......
T Consensus 364 -~a~M~~~R-~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W---------------------~~va~m~~~r 418 (571)
T KOG4441|consen 364 -VAPMNTKR-SDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKW---------------------TPVAPMLTRR 418 (571)
T ss_pred -cCCccCcc-ccceeEEE--CCEEEEEeccccccccccEEEecCCCCcc---------------------cccCCCCcce
Confidence 22111111 11223333 7889999999974 66677666221 1111111122
Q ss_pred CceeeeeeeCcEEEEeecCC------eEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCC-
Q 017553 241 NYVDCNRWLGDFILSKSVDN------EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG- 313 (369)
Q Consensus 241 ~~v~~~~~~~~~l~~~~~d~------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg- 313 (369)
.......+.|...++|+.++ .+..||..+.. ...+..+........ ++ .-++ .+.+.|+.|+
T Consensus 419 ~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~-------W~~~~~M~~~R~~~g-~a-~~~~--~iYvvGG~~~~ 487 (571)
T KOG4441|consen 419 SGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNT-------WTLIAPMNTRRSGFG-VA-VLNG--KIYVVGGFDGT 487 (571)
T ss_pred eeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCc-------eeecCCcccccccce-EE-EECC--EEEEECCccCC
Confidence 22333444577888888654 47788887764 222222222222222 22 2333 2677777665
Q ss_pred ----eEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCe-----EEEEecC
Q 017553 314 ----KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGA-----IWRWDAI 367 (369)
Q Consensus 314 ----~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~-----i~vw~~~ 367 (369)
+|..||..+.+...+..+. .....+..+.+ ++...++|+.||. |..||-.
T Consensus 488 ~~~~~VE~ydp~~~~W~~v~~m~--~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~ 546 (571)
T KOG4441|consen 488 SALSSVERYDPETNQWTMVAPMT--SPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPE 546 (571)
T ss_pred CccceEEEEcCCCCceeEcccCc--cccccccEEEE--CCEEEEEecccCccccceeEEcCCC
Confidence 3888999998776665554 22233322333 5678888888875 5555543
No 344
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.22 E-value=0.00024 Score=47.23 Aligned_cols=104 Identities=11% Similarity=0.110 Sum_probs=69.5
Q ss_pred eEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEE
Q 017553 36 LYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVID 114 (369)
Q Consensus 36 v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd 114 (369)
|+++++...+....+-|++|++|. |++|+ ..+.+..+. ..+.|..++-. ..+ .++.+..+|+|-+|+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~------e~~~v~~L~~~--~~~--~F~Y~l~NGTVGvY~ 69 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEIT------ETDKVTSLCSL--GGG--RFAYALANGTVGVYD 69 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEe------cccceEEEEEc--CCC--EEEEEecCCEEEEEe
Confidence 788888876543347888999998 99998 334555554 34456556544 443 699999999999998
Q ss_pred cCCccccceeeccccceEEEEecCCC---CceEEEEeCCCcEE
Q 017553 115 VSNEKLHKSFVGHGDSINEIRTQPLK---PSLVVSASKDESVR 154 (369)
Q Consensus 115 ~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~s~~~dg~i~ 154 (369)
- ...+...+... .+.++.+...+ ...|++|-.+|.|-
T Consensus 70 ~--~~RlWRiKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 70 R--SQRLWRIKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred C--cceeeeeccCC-CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 4 33344555333 36666655422 23788998888774
No 345
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.22 E-value=0.0025 Score=54.04 Aligned_cols=79 Identities=11% Similarity=0.177 Sum_probs=46.7
Q ss_pred cEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCcccccee-ec-------c---
Q 017553 59 RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSF-VG-------H--- 127 (369)
Q Consensus 59 ~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~-------~--- 127 (369)
.+.|||+.+++....... ...+....|+ |+|+ .++... ++.|.+++..+++..+.- .+ -
T Consensus 24 ~y~i~d~~~~~~~~l~~~------~~~~~~~~~s--P~g~-~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dw 93 (353)
T PF00930_consen 24 DYYIYDIETGEITPLTPP------PPKLQDAKWS--PDGK-YIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDW 93 (353)
T ss_dssp EEEEEETTTTEEEESS-E------ETTBSEEEE---SSST-EEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--H
T ss_pred eEEEEecCCCceEECcCC------ccccccceee--cCCC-eeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccce
Confidence 388999888655443332 3456667888 9998 666664 578999987666433211 11 0
Q ss_pred ------ccceEEEEecCCCCceEEEEe
Q 017553 128 ------GDSINEIRTQPLKPSLVVSAS 148 (369)
Q Consensus 128 ------~~~v~~~~~~~~~~~~l~s~~ 148 (369)
-+.-..+-|+| +++.|+...
T Consensus 94 vyeEEv~~~~~~~~WSp-d~~~la~~~ 119 (353)
T PF00930_consen 94 VYEEEVFDRRSAVWWSP-DSKYLAFLR 119 (353)
T ss_dssp HHHHHTSSSSBSEEE-T-TSSEEEEEE
T ss_pred eccccccccccceEECC-CCCEEEEEE
Confidence 11235688999 777666553
No 346
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.21 E-value=0.0018 Score=52.00 Aligned_cols=155 Identities=15% Similarity=0.115 Sum_probs=99.3
Q ss_pred EEEeeccCCCccEEEEecCC-----c-EEEEEec-CCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEee------
Q 017553 39 VVFNFIDSRYFNVFATVGGN-----R-VTVYQCL-EGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG------ 105 (369)
Q Consensus 39 ~~~s~~~~~~~~~la~~~~~-----~-v~iw~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~------ 105 (369)
-.||| +|++|.+.-.+ + |-|||.. .-..+.++..+.-..|+ +.+. |||+ .|+++.
T Consensus 56 g~fs~----dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHe-----l~l~--pDG~-tLvVANGGI~Th 123 (305)
T PF07433_consen 56 GVFSP----DGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHE-----LLLM--PDGE-TLVVANGGIETH 123 (305)
T ss_pred EEEcC----CCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhh-----EEEc--CCCC-EEEEEcCCCccC
Confidence 46888 68999887543 3 9999988 55566666654433443 6666 9996 555541
Q ss_pred ------------cCCeEEEEEcCCccccce--e--eccccceEEEEecCCCCceEEEEeCCCc-------EEEEEccCCc
Q 017553 106 ------------INGIIRVIDVSNEKLHKS--F--VGHGDSINEIRTQPLKPSLVVSASKDES-------VRLWNVQTGI 162 (369)
Q Consensus 106 ------------~dg~i~vwd~~~~~~~~~--~--~~~~~~v~~~~~~~~~~~~l~s~~~dg~-------i~vwd~~~~~ 162 (369)
.+..+...|..+|+.+.. + .-|.-.|..+++.+ ++..++..-..|. |-+++ .++
T Consensus 124 pd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~--~g~ 200 (305)
T PF07433_consen 124 PDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHR--RGG 200 (305)
T ss_pred cccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecC-CCcEEEEEecCCCCCccCCeEEEEc--CCC
Confidence 233456667778877665 4 23777899999999 7766665544332 23333 333
Q ss_pred EEEEeecc----CCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCce
Q 017553 163 CILIFAGA----GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 208 (369)
Q Consensus 163 ~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~ 208 (369)
.+..+... ..-.+.+-+|++++++....+|+-..+.+.+||..++.
T Consensus 201 ~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~ 250 (305)
T PF07433_consen 201 ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGR 250 (305)
T ss_pred cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCC
Confidence 33333311 13456789999998334455677777899999999843
No 347
>PHA02713 hypothetical protein; Provisional
Probab=98.19 E-value=0.00039 Score=62.38 Aligned_cols=217 Identities=11% Similarity=0.082 Sum_probs=110.1
Q ss_pred eEEEEEcCCccc--cceeeccccceEEEEecCCCCceEEEEeCC------CcEEEEEccCCcEEEEeeccCCCCCcEEEE
Q 017553 109 IIRVIDVSNEKL--HKSFVGHGDSINEIRTQPLKPSLVVSASKD------ESVRLWNVQTGICILIFAGAGGHRNEVLSV 180 (369)
Q Consensus 109 ~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~ 180 (369)
.+..||..+++. +..+...... .+++.. ++.+++.||.+ ..+..||+.++... .+.... ....-.++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~l--~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~-~~R~~~~~ 347 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASAIV--DNEIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMI-KNRCRFSL 347 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEEEE--CCEEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCc-chhhceeE
Confidence 467788776542 2222211111 122222 56777788754 34778888776532 222111 11111233
Q ss_pred EecCCCceEEEEEeeCC-----cEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeeeCcEEEE
Q 017553 181 DFHPSDIYRIASCGMDN-----TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILS 255 (369)
Q Consensus 181 ~~~~~~~~~l~~~~~d~-----~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~ 255 (369)
+.. ++.+.+.||.++ .+..||..+.. |...+ .+.........+..++...+.
T Consensus 348 ~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~--------W~~~~-------------~mp~~r~~~~~~~~~g~IYvi 404 (557)
T PHA02713 348 AVI--DDTIYAIGGQNGTNVERTIECYTMGDDK--------WKMLP-------------DMPIALSSYGMCVLDQYIYII 404 (557)
T ss_pred EEE--CCEEEEECCcCCCCCCceEEEEECCCCe--------EEECC-------------CCCcccccccEEEECCEEEEE
Confidence 333 678888888764 37778877632 11100 011111111223344666677
Q ss_pred eecCC-----------------------eEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCC
Q 017553 256 KSVDN-----------------------EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE 312 (369)
Q Consensus 256 ~~~d~-----------------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~d 312 (369)
|+.++ .+..||+.+.+ ...+..+..... ...+..-+++ +.+.|+.+
T Consensus 405 GG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~-------W~~v~~m~~~r~--~~~~~~~~~~--IYv~GG~~ 473 (557)
T PHA02713 405 GGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI-------WETLPNFWTGTI--RPGVVSHKDD--IYVVCDIK 473 (557)
T ss_pred eCCCcccccccccccccccccccccccceEEEECCCCCe-------EeecCCCCcccc--cCcEEEECCE--EEEEeCCC
Confidence 76542 46778877653 112222221111 1112233443 55556543
Q ss_pred ------CeEEEEEccC-CCceeEEEeecCCCccceEEEEecCCCCEEEEeecCC--eEEEEecCC
Q 017553 313 ------GKIFVWELQS-SPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDG--AIWRWDAIP 368 (369)
Q Consensus 313 ------g~i~i~d~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg--~i~vw~~~~ 368 (369)
..+..||..+ .+...+..++ ........+.+ +|.+.++|+.|| .+..||..+
T Consensus 474 ~~~~~~~~ve~Ydp~~~~~W~~~~~m~--~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 474 DEKNVKTCIFRYNTNTYNGWELITTTE--SRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYT 534 (557)
T ss_pred CCCccceeEEEecCCCCCCeeEccccC--cccccceeEEE--CCEEEEEeeecceeehhhcCccc
Confidence 3478899998 6666666555 22233333333 788999999888 677777665
No 348
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.12 E-value=0.0017 Score=55.28 Aligned_cols=213 Identities=11% Similarity=0.088 Sum_probs=111.3
Q ss_pred ceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEE-------------------------Eeec---------------
Q 017553 130 SINEIRTQPLKPSLVVSASKDESVRLWNVQTGICIL-------------------------IFAG--------------- 169 (369)
Q Consensus 130 ~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-------------------------~~~~--------------- 169 (369)
.|+.+.|.+ +...|+.|...|.|.||.....+.-. .+..
T Consensus 3 ~v~~vs~a~-~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAP-ETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEET-TTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecC-CCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 578889998 77788888999999998765332111 0000
Q ss_pred cCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee
Q 017553 170 AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL 249 (369)
Q Consensus 170 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 249 (369)
.....++|++++.+ +-.+++.|..+|.+.+.|+|.+.......+.. ..........++++.|.
T Consensus 82 ~~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~---------------~~~~~~~~~~vt~ieF~ 144 (395)
T PF08596_consen 82 LDAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRE---------------SFLSKSSSSYVTSIEFS 144 (395)
T ss_dssp E---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG-----------------T-SS----EEEEEEE
T ss_pred eeccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccc---------------cccccccccCeeEEEEE
Confidence 01346889999997 56689999999999999999865554433221 00112234456677774
Q ss_pred -----C-----cEEEEeecCCeEEEecCCC-CCCCCCCCccceeeeccCCCCCeeEEE-EeecCCc--------------
Q 017553 250 -----G-----DFILSKSVDNEIVLWEPKM-KEQSPGEGTADILQKYPVPECDIWFIK-FSCDFHY-------------- 303 (369)
Q Consensus 250 -----~-----~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~-~s~~~~~-------------- 303 (369)
+ -.+++|...|.+.+|.+.- ..... ..........+..++..+. +..+...
T Consensus 145 vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f---~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~ 221 (395)
T PF08596_consen 145 VMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRF---SVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSK 221 (395)
T ss_dssp EEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-E---EEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGG
T ss_pred EEecCCCcccceEEEEEeCCCCEEEEEEecCCCCce---EEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhcccc
Confidence 1 2788999999999998752 11100 0111111122334444443 3221100
Q ss_pred ----cEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEec-----CCCCEEEEeecCCeEEEEecC
Q 017553 304 ----NAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMS-----YDGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 304 ----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~~~~l~s~~~dg~i~vw~~~ 367 (369)
.-++....+..++++...+.+. ..+.. ........+.+- ..+..|++-..+|.|+++.+-
T Consensus 222 g~~i~g~vVvvSe~~irv~~~~~~k~--~~K~~--~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP 290 (395)
T PF08596_consen 222 GISIPGYVVVVSESDIRVFKPPKSKG--AHKSF--DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLP 290 (395)
T ss_dssp T----EEEEEE-SSEEEEE-TT---E--EEEE---SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETT
T ss_pred CCCcCcEEEEEcccceEEEeCCCCcc--cceee--ccccccceEEEEeecccCCceEEEEEECCCcEEEEECC
Confidence 1223334466799999887743 22222 111223334442 356778888899999999864
No 349
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.11 E-value=0.0026 Score=50.18 Aligned_cols=205 Identities=8% Similarity=0.073 Sum_probs=108.4
Q ss_pred cccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeecc-ccceEEEEecCCCCceEEEEeCCCcEEEEEccC
Q 017553 82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGH-GDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 160 (369)
Q Consensus 82 ~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 160 (369)
-...+..++|. |+...++++....+.|..++. +|+.++++.-. .+..-.|++.. ++.++++--.++.+.++++..
T Consensus 20 ~~~e~SGLTy~--pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~~~ 95 (248)
T PF06977_consen 20 ILDELSGLTYN--PDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTIDD 95 (248)
T ss_dssp --S-EEEEEEE--TTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE--
T ss_pred ccCCccccEEc--CCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEEec
Confidence 44458889998 876548888888999998886 57777776532 35678888876 666666655689999998843
Q ss_pred Cc------EEEEee--ccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCce--eeeeeeeeccCCCCCCCCceee
Q 017553 161 GI------CILIFA--GAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW--TYVEKSFTWTDLPSKFPTKYVQ 230 (369)
Q Consensus 161 ~~------~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 230 (369)
.. ....+. ....++..+-.++|+| .++.|+.+-...-..+|.++... ...... ..
T Consensus 96 ~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~-~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~--------------~~ 160 (248)
T PF06977_consen 96 DTTSLDRADVQKISLGFPNKGNKGFEGLAYDP-KTNRLFVAKERKPKRLYEVNGFPGGFDLFVS--------------DD 160 (248)
T ss_dssp --TT--EEEEEEEE---S---SS--EEEEEET-TTTEEEEEEESSSEEEEEEESTT-SS--EEE--------------E-
T ss_pred cccccchhhceEEecccccCCCcceEEEEEcC-CCCEEEEEeCCCChhhEEEccccCccceeec--------------cc
Confidence 21 112222 1113556789999999 54555556666667777776511 000000 00
Q ss_pred cceeeeccCCCceeeeeee---CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCC---------CCeeEEEEe
Q 017553 231 FPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPE---------CDIWFIKFS 298 (369)
Q Consensus 231 ~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~---------~~i~~~~~s 298 (369)
............+.++.++ +++++....+..|..+|.. ++ .+..+.... .....++|.
T Consensus 161 ~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~-G~---------~~~~~~L~~g~~gl~~~~~QpEGIa~d 230 (248)
T PF06977_consen 161 QDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ-GR---------VVSSLSLDRGFHGLSKDIPQPEGIAFD 230 (248)
T ss_dssp HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT------------EEEEEE-STTGGG-SS---SEEEEEE-
T ss_pred cccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCC-CC---------EEEEEEeCCcccCcccccCCccEEEEC
Confidence 0011122233446677776 5677777888888888843 33 222222111 346779999
Q ss_pred ecCCccEEEEecCCCeEEEE
Q 017553 299 CDFHYNAAAIGNREGKIFVW 318 (369)
Q Consensus 299 ~~~~~~~l~~~~~dg~i~i~ 318 (369)
++|. |...++-+..++|
T Consensus 231 ~~G~---LYIvsEpNlfy~f 247 (248)
T PF06977_consen 231 PDGN---LYIVSEPNLFYRF 247 (248)
T ss_dssp TT-----EEEEETTTEEEEE
T ss_pred CCCC---EEEEcCCceEEEe
Confidence 9884 4445566666655
No 350
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.09 E-value=0.0036 Score=51.01 Aligned_cols=268 Identities=13% Similarity=0.097 Sum_probs=144.3
Q ss_pred cEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEe----------ecCCeEEEEEcCCccccceeeccc
Q 017553 59 RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG----------GINGIIRVIDVSNEKLHKSFVGHG 128 (369)
Q Consensus 59 ~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~----------~~dg~i~vwd~~~~~~~~~~~~~~ 128 (369)
++.|+|..+++.+..+..-.. -.+..+ |+|+ .++++ -..-.|.+||..+-.+...+.-..
T Consensus 18 rv~viD~d~~k~lGmi~~g~~-------~~~~~s--pdgk-~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~ 87 (342)
T PF06433_consen 18 RVYVIDADSGKLLGMIDTGFL-------GNVALS--PDGK-TIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPP 87 (342)
T ss_dssp EEEEEETTTTEEEEEEEEESS-------EEEEE---TTSS-EEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETT
T ss_pred eEEEEECCCCcEEEEeecccC-------CceeEC--CCCC-EEEEEEEEEeccccccceeEEEEEecCcCcccceEecCC
Confidence 599999888888777764221 124444 8998 66653 233469999999887665443211
Q ss_pred c-------ceEEEEecCCCCceEEEE--eCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcE
Q 017553 129 D-------SINEIRTQPLKPSLVVSA--SKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTV 199 (369)
Q Consensus 129 ~-------~v~~~~~~~~~~~~l~s~--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v 199 (369)
+ ....++++. ++++++.. +-..+|.|.|+..++.+..+.. .+ |.-..|..+.-|.+-+.||.+
T Consensus 88 k~R~~~~~~~~~~~ls~-dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~----PG---C~~iyP~~~~~F~~lC~DGsl 159 (342)
T PF06433_consen 88 KPRAQVVPYKNMFALSA-DGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT----PG---CWLIYPSGNRGFSMLCGDGSL 159 (342)
T ss_dssp S-B--BS--GGGEEE-T-TSSEEEEEEESSSEEEEEEETTTTEEEEEEEG----TS---EEEEEEEETTEEEEEETTSCE
T ss_pred cchheecccccceEEcc-CCcEEEEEccCCCCeEEEEECCCCceeeeecC----CC---EEEEEecCCCceEEEecCCce
Confidence 1 123356666 66655554 3345788888888888887763 22 222223234457788889999
Q ss_pred EEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCcee-eeeee--CcEEEEeecCCeEEEecCCCCCCCCCC
Q 017553 200 KIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD-CNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGE 276 (369)
Q Consensus 200 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~ 276 (369)
.-..+....+..... ...+..-..++. .-.+. +..++-.+.+|.|+-.|+.........
T Consensus 160 ~~v~Ld~~Gk~~~~~------------------t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~ 221 (342)
T PF06433_consen 160 LTVTLDADGKEAQKS------------------TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGK 221 (342)
T ss_dssp EEEEETSTSSEEEEE------------------EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEE
T ss_pred EEEEECCCCCEeEee------------------ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccC
Confidence 999998532221111 001111111111 11222 344554677888888777665421100
Q ss_pred Cccceeeec----cCCCCCeeEEEEeecCCccEEEE-ec-----CCC--eEEEEEccCCCceeEEEeecCCCccceEEEE
Q 017553 277 GTADILQKY----PVPECDIWFIKFSCDFHYNAAAI-GN-----REG--KIFVWELQSSPPVLIARLSHAQSKSPIRQTA 344 (369)
Q Consensus 277 ~~~~~~~~~----~~~~~~i~~~~~s~~~~~~~l~~-~~-----~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 344 (369)
....+..- .-..+...-+++++..+..+++- -+ .|+ .|.++|+.++ +.+.+++.. .++.++.
T Consensus 222 -~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~--krv~Ri~l~---~~~~Si~ 295 (342)
T PF06433_consen 222 -PWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH--KRVARIPLE---HPIDSIA 295 (342)
T ss_dssp -EEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTT--EEEEEEEEE---EEESEEE
T ss_pred -cccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCC--eEEEEEeCC---CccceEE
Confidence 00000000 00012334467776554222221 11 233 3666677776 555555532 4688999
Q ss_pred ecCCCC-EEEEe-ecCCeEEEEecCC
Q 017553 345 MSYDGS-TILSC-CEDGAIWRWDAIP 368 (369)
Q Consensus 345 ~s~~~~-~l~s~-~~dg~i~vw~~~~ 368 (369)
.+.+.+ +|++. ..++.+.+||..+
T Consensus 296 Vsqd~~P~L~~~~~~~~~l~v~D~~t 321 (342)
T PF06433_consen 296 VSQDDKPLLYALSAGDGTLDVYDAAT 321 (342)
T ss_dssp EESSSS-EEEEEETTTTEEEEEETTT
T ss_pred EccCCCcEEEEEcCCCCeEEEEeCcC
Confidence 998775 66544 4688999999865
No 351
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.04 E-value=0.0014 Score=59.97 Aligned_cols=148 Identities=11% Similarity=0.032 Sum_probs=93.8
Q ss_pred CCceEEEE-eCCCcEEEEEccCCcEEEEeeccCCCCC-cEEEEEecC----CCceEEEEEeeCCcEEEEEccCceeeeee
Q 017553 140 KPSLVVSA-SKDESVRLWNVQTGICILIFAGAGGHRN-EVLSVDFHP----SDIYRIASCGMDNTVKIWSMKEFWTYVEK 213 (369)
Q Consensus 140 ~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~----~~~~~l~~~~~d~~v~i~d~~~~~~~~~~ 213 (369)
+.++|+.- .....|+-.|++.|+.+..+.. |.. +|..++=.. -.+..-+.|-.+..+..||.|-....+
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~---~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~-- 566 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKV---HDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKL-- 566 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeec---CCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCce--
Confidence 44554443 4567899999999999999983 443 355554221 123345667778899999999721000
Q ss_pred eeeccCCCCCCCCceeecceeeeccCCCceeeeeee-CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCe
Q 017553 214 SFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDI 292 (369)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i 292 (369)
........ .......|++-. ..+||+|+.+|.||+||-- +.. .-..+++-..+|
T Consensus 567 ---------------v~~~~k~Y-~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~-g~~--------AKT~lp~lG~pI 621 (794)
T PF08553_consen 567 ---------------VDSQSKQY-SSKNNFSCFATTEDGYIAVGSNKGDIRLYDRL-GKR--------AKTALPGLGDPI 621 (794)
T ss_pred ---------------eecccccc-ccCCCceEEEecCCceEEEEeCCCcEEeeccc-chh--------hhhcCCCCCCCe
Confidence 00001111 233456667666 6699999999999999943 221 233455556899
Q ss_pred eEEEEeecCCccEEEEecCCCeEEEEEc
Q 017553 293 WFIKFSCDFHYNAAAIGNREGKIFVWEL 320 (369)
Q Consensus 293 ~~~~~s~~~~~~~l~~~~~dg~i~i~d~ 320 (369)
..+..+.||+ ++++.+ +..+.+++.
T Consensus 622 ~~iDvt~DGk--wilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 622 IGIDVTADGK--WILATC-KTYLLLIDT 646 (794)
T ss_pred eEEEecCCCc--EEEEee-cceEEEEEE
Confidence 9999999997 444333 456777775
No 352
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.01 E-value=0.0071 Score=52.14 Aligned_cols=204 Identities=14% Similarity=0.086 Sum_probs=101.7
Q ss_pred eEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeecc----CCCCCcEEEEEecC
Q 017553 109 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGA----GGHRNEVLSVDFHP 184 (369)
Q Consensus 109 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~----~~~~~~v~~~~~~~ 184 (369)
.|++|+. .|+++.++.-..+.|.++.|+. + ..|+.-..||.++++|+. |+....+... .-....+....+..
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~-~-e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~ 137 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTD-D-EELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYK 137 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECC-C-CeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCC
Confidence 5999994 6777777665458999999987 4 456677889999999986 3331111100 01112222223332
Q ss_pred CCceEEEEEeeCCcEEEEEccCceeeee-eeeeccCCCCCCCCceeecceeeeccCCC--ceeeeeeeCcEEEEeecCCe
Q 017553 185 SDIYRIASCGMDNTVKIWSMKEFWTYVE-KSFTWTDLPSKFPTKYVQFPVFIASVHSN--YVDCNRWLGDFILSKSVDNE 261 (369)
Q Consensus 185 ~~~~~l~~~~~d~~v~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~l~~~~~d~~ 261 (369)
+|-.+++ .++.+.+. ........ .... ..+. .......+.. .+..+.-+....+....++.
T Consensus 138 -~GivvLt--~~~~~~~v--~n~~~~~~~~~~~--~~p~---------~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~ 201 (410)
T PF04841_consen 138 -NGIVVLT--GNNRFYVV--NNIDEPVKLRRLP--EIPG---------LWTKFHWWPSWTVIPLLSSDRVVEILLANGET 201 (410)
T ss_pred -CCEEEEC--CCCeEEEE--eCccccchhhccc--cCCC---------cccccccccccccceEeecCcceEEEEecCCE
Confidence 4433333 33444333 33111100 0000 0000 0000000111 01111112334444455566
Q ss_pred EEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceE
Q 017553 262 IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIR 341 (369)
Q Consensus 262 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~ 341 (369)
+.+.+-...+ . .. ..+++..+++||+++ ++|.-..+|.+.+....-.+ ...++.. .......
T Consensus 202 i~~i~~~~~~---------~---i~-~~~~i~~iavSpng~--~iAl~t~~g~l~v~ssDf~~--~~~e~~~-~~~~~p~ 263 (410)
T PF04841_consen 202 IYIIDENSFK---------Q---ID-SDGPIIKIAVSPNGK--FIALFTDSGNLWVVSSDFSE--KLCEFDT-DSKSPPK 263 (410)
T ss_pred EEEEEccccc---------c---cc-CCCCeEEEEECCCCC--EEEEEECCCCEEEEECcccc--eeEEeec-CcCCCCc
Confidence 6644433211 0 11 235789999999997 78888888999888765443 2333331 1234566
Q ss_pred EEEecCCCC
Q 017553 342 QTAMSYDGS 350 (369)
Q Consensus 342 ~~~~s~~~~ 350 (369)
.|.|.-+..
T Consensus 264 ~~~WCG~da 272 (410)
T PF04841_consen 264 QMAWCGNDA 272 (410)
T ss_pred EEEEECCCc
Confidence 777776543
No 353
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.00 E-value=0.006 Score=52.61 Aligned_cols=181 Identities=13% Similarity=0.145 Sum_probs=88.6
Q ss_pred cEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeec
Q 017553 152 SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQF 231 (369)
Q Consensus 152 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (369)
.|++|+. .|+.+..+.- ..+.+.++.|.. + ..|+....||.+++||+.... ...+ ..
T Consensus 62 ~I~iys~-sG~ll~~i~w---~~~~iv~~~wt~-~-e~LvvV~~dG~v~vy~~~G~~---~fsl--------------~~ 118 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPW---DSGRIVGMGWTD-D-EELVVVQSDGTVRVYDLFGEF---QFSL--------------GE 118 (410)
T ss_pred EEEEECC-CCCEeEEEEE---CCCCEEEEEECC-C-CeEEEEEcCCEEEEEeCCCce---eech--------------hh
Confidence 4888886 4666666552 237899999985 4 446667789999999987522 0000 01
Q ss_pred ceeeeccCCCceeeeeeeCcEEEEeecCCeEEEecCCCCCCC-CCCC-ccceeeeccCCCCCeeE-EEEeecCCccEEEE
Q 017553 232 PVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQS-PGEG-TADILQKYPVPECDIWF-IKFSCDFHYNAAAI 308 (369)
Q Consensus 232 ~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~-~~~~~~~~~~~~~~i~~-~~~s~~~~~~~l~~ 308 (369)
.+.........+....+.+.-++.-..++.+.+.+-...... .... ............ .... ..++.+.. ..+.
T Consensus 119 ~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~-~~~~i~~l~~~~~--~~i~ 195 (410)
T PF04841_consen 119 EIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWP-SWTVIPLLSSDRV--VEIL 195 (410)
T ss_pred hccccCcccccccccccCCCCEEEECCCCeEEEEeCccccchhhccccCCCccccccccc-ccccceEeecCcc--eEEE
Confidence 111111122222222322122333334455444322221100 0000 000000010111 1111 22333433 3333
Q ss_pred ecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEec
Q 017553 309 GNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 366 (369)
Q Consensus 309 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~ 366 (369)
...++.+.+.+-...+. + ...+++..|+.||+|++||.-..+|.+.|...
T Consensus 196 ~~~g~~i~~i~~~~~~~-----i---~~~~~i~~iavSpng~~iAl~t~~g~l~v~ss 245 (410)
T PF04841_consen 196 LANGETIYIIDENSFKQ-----I---DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSS 245 (410)
T ss_pred EecCCEEEEEEcccccc-----c---cCCCCeEEEEECCCCCEEEEEECCCCEEEEEC
Confidence 34445566444332211 1 22368999999999999999999999887753
No 354
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.99 E-value=0.0036 Score=54.06 Aligned_cols=221 Identities=11% Similarity=0.064 Sum_probs=107.9
Q ss_pred eeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeecc
Q 017553 91 WACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGA 170 (369)
Q Consensus 91 ~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 170 (369)
.+++|+|+ ++++ ..+|...++.....+.. ..+.-....|.+ .+ .+|+-...+.|.++.--+.+....+.
T Consensus 38 ls~npngr-~v~V-~g~geY~iyt~~~~r~k-----~~G~g~~~vw~~-~n-~yAv~~~~~~I~I~kn~~~~~~k~i~-- 106 (443)
T PF04053_consen 38 LSHNPNGR-FVLV-CGDGEYEIYTALAWRNK-----AFGSGLSFVWSS-RN-RYAVLESSSTIKIYKNFKNEVVKSIK-- 106 (443)
T ss_dssp EEE-TTSS-EEEE-EETTEEEEEETTTTEEE-----EEEE-SEEEE-T-SS-EEEEE-TTS-EEEEETTEE-TT------
T ss_pred EEECCCCC-EEEE-EcCCEEEEEEccCCccc-----ccCceeEEEEec-Cc-cEEEEECCCeEEEEEcCccccceEEc--
Confidence 34449999 6666 55788888883322211 234456788987 44 46666668889996322222222333
Q ss_pred CCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee-
Q 017553 171 GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL- 249 (369)
Q Consensus 171 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~- 249 (369)
....+..+- .|.+|...+ ++.|.+||..++ ..+..+... .|..+.|+
T Consensus 107 --~~~~~~~If----~G~LL~~~~-~~~i~~yDw~~~-----------------------~~i~~i~v~--~vk~V~Ws~ 154 (443)
T PF04053_consen 107 --LPFSVEKIF----GGNLLGVKS-SDFICFYDWETG-----------------------KLIRRIDVS--AVKYVIWSD 154 (443)
T ss_dssp ---SS-EEEEE-----SSSEEEEE-TTEEEEE-TTT-------------------------EEEEESS---E-EEEEE-T
T ss_pred --CCcccceEE----cCcEEEEEC-CCCEEEEEhhHc-----------------------ceeeEEecC--CCcEEEEEC
Confidence 222333332 256666554 448999999983 334444432 38889998
Q ss_pred -CcEEEEeecCCeEEEecCCCC--CCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCce
Q 017553 250 -GDFILSKSVDNEIVLWEPKMK--EQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPV 326 (369)
Q Consensus 250 -~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 326 (369)
+++++..+.+ .+.+++.... ......+....+.....-...|.+.+|..+- ++.+... +++. +-.++..
T Consensus 155 ~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d~---fiYtT~~--~lkY--l~~Ge~~ 226 (443)
T PF04053_consen 155 DGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVEDC---FIYTTSN--HLKY--LVNGETG 226 (443)
T ss_dssp TSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETTE---EEEE-TT--EEEE--EETTEEE
T ss_pred CCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcCE---EEEEcCC--eEEE--EEcCCcc
Confidence 6677776654 6666654433 0000011111122222213567788887662 4544433 6665 5555444
Q ss_pred eEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecC
Q 017553 327 LIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 327 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 367 (369)
.+..+. .++.=+.+.|+.+.+.....|+.|..+.+.
T Consensus 227 ~i~~ld-----~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 227 IIAHLD-----KPLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp EEEE-S-----S--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred eEEEcC-----CceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 444443 456667788877788888899988888764
No 355
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=4.1e-05 Score=65.69 Aligned_cols=94 Identities=13% Similarity=0.182 Sum_probs=77.9
Q ss_pred cceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceE-EEEecCCCCceEEEEeCCCcEEEEEccCCc
Q 017553 84 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSIN-EIRTQPLKPSLVVSASKDESVRLWNVQTGI 162 (369)
Q Consensus 84 ~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 162 (369)
..+.-+.|+ |.-. ++|.+..+|.|.+..++ .+.+.++.-|...++ +++|.| ++++|+.|-.||+|++.|++++.
T Consensus 21 ~~i~~~ewn--P~~d-LiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 21 INIKRIEWN--PKMD-LIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred cceEEEEEc--Cccc-hhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCC
Confidence 355668888 7776 99999999999999987 777888887777777 999999 89999999999999999999998
Q ss_pred EEEEeeccCCCCCcEEEEEecC
Q 017553 163 CILIFAGAGGHRNEVLSVDFHP 184 (369)
Q Consensus 163 ~~~~~~~~~~~~~~v~~~~~~~ 184 (369)
.+..... .....|.++-|.+
T Consensus 96 ~l~~~~~--s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 96 RLVSFLF--SVETDISKGIWDR 115 (665)
T ss_pred ceecccc--ccccchheeeccc
Confidence 8776321 3566788888864
No 356
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.96 E-value=0.0088 Score=50.88 Aligned_cols=95 Identities=17% Similarity=0.225 Sum_probs=64.1
Q ss_pred EEEEeeccCCCccEEEEecCCc-EEE---EEec-CC----ceeEEEeeeccCCcccceeEEEeeec---------CCCcc
Q 017553 38 AVVFNFIDSRYFNVFATVGGNR-VTV---YQCL-EG----GVIAALQSYVDEDKEESFYTVSWACN---------VDGIP 99 (369)
Q Consensus 38 ~~~~s~~~~~~~~~la~~~~~~-v~i---w~~~-~~----~~~~~~~~~~~~~~~~~v~~~~~~~~---------~~g~~ 99 (369)
.++.+| +++++|.+..++ +.+ |+.. .+ .......+.......+.|+++.|.+- +|..
T Consensus 6 ~isls~----~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~- 80 (415)
T PF14655_consen 6 SISLSP----DGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWT- 80 (415)
T ss_pred eEEecC----CCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcE-
Confidence 466778 689999999888 333 5331 11 22222222222222367888887754 4556
Q ss_pred EEEEeecCCeEEEEEcCCccccceeeccccceEEEEecC
Q 017553 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQP 138 (369)
Q Consensus 100 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 138 (369)
.+++|..+|.|++|. ++|.++..-.-|..+|..|.+..
T Consensus 81 ~I~VG~ssG~vrfyt-e~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 81 CIAVGTSSGYVRFYT-ENGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred EEEEEecccEEEEEe-ccchHHHHHhcCccceEEEEecc
Confidence 899999999999999 57877777667889999888753
No 357
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.96 E-value=1.8e-05 Score=59.22 Aligned_cols=105 Identities=9% Similarity=0.123 Sum_probs=66.0
Q ss_pred CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCC-ccEEEEecCCCeEEEEEccCCCceeE
Q 017553 250 GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFH-YNAAAIGNREGKIFVWELQSSPPVLI 328 (369)
Q Consensus 250 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~ 328 (369)
+..+++|+.+|.|++|+...... ....+......+.++. |.++ ..+..+++.+|.|+.|++...+. +
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~--------~~d~~~s~~e~i~~~I--p~~~~~~~~c~~~~dg~ir~~n~~p~k~--~ 137 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGA--------HSDRVCSGEESIDLGI--PNGRDSSLGCVGAQDGRIRACNIKPNKV--L 137 (238)
T ss_pred CceEEeecccceEEEecCCccch--------HHHhhhcccccceecc--ccccccceeEEeccCCceeeeccccCce--e
Confidence 67899999999999999873221 1111111122222221 2222 14788999999999999998743 2
Q ss_pred EEeecCCCc-cceEEEEecCCCCEEEEe--ecCCeEEEEecCC
Q 017553 329 ARLSHAQSK-SPIRQTAMSYDGSTILSC--CEDGAIWRWDAIP 368 (369)
Q Consensus 329 ~~~~~~~~~-~~v~~~~~s~~~~~l~s~--~~dg~i~vw~~~~ 368 (369)
.... .|. .++.....+..+++|+.+ |.|..++.|++..
T Consensus 138 g~~g--~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 138 GYVG--QHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeec--cccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 2222 333 455566666667777777 7888888888753
No 358
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.89 E-value=0.0042 Score=52.64 Aligned_cols=223 Identities=12% Similarity=0.090 Sum_probs=113.5
Q ss_pred cCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccC-----CC-------
Q 017553 106 INGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAG-----GH------- 173 (369)
Q Consensus 106 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-----~~------- 173 (369)
..+.+.++|+.+++....... ...+....|+| +++.++... ++.|.+++..+++..+.-.... |-
T Consensus 21 ~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP-~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeE 97 (353)
T PF00930_consen 21 FKGDYYIYDIETGEITPLTPP-PPKLQDAKWSP-DGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEE 97 (353)
T ss_dssp EEEEEEEEETTTTEEEESS-E-ETTBSEEEE-S-SSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHH
T ss_pred cceeEEEEecCCCceEECcCC-ccccccceeec-CCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccc
Confidence 346799999998765443333 57789999999 788877765 4789999987774443222100 00
Q ss_pred --CCcEEEEEecCCCceEEEEEee-CCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee-
Q 017553 174 --RNEVLSVDFHPSDIYRIASCGM-DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL- 249 (369)
Q Consensus 174 --~~~v~~~~~~~~~~~~l~~~~~-d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~- 249 (369)
-+.-..+-|+| +++.|+.... +..|+.+.+........ .. ..+..+.+-
T Consensus 98 Ev~~~~~~~~WSp-d~~~la~~~~d~~~v~~~~~~~~~~~~~-----------------~y---------p~~~~~~YPk 150 (353)
T PF00930_consen 98 EVFDRRSAVWWSP-DSKYLAFLRFDEREVPEYPLPDYSPPDS-----------------QY---------PEVESIRYPK 150 (353)
T ss_dssp HTSSSSBSEEE-T-TSSEEEEEEEE-TTS-EEEEEEESSSTE-----------------SS----------EEEEEE--B
T ss_pred cccccccceEECC-CCCEEEEEEECCcCCceEEeeccCCccc-----------------cC---------CcccccccCC
Confidence 11235688999 6666665544 45566655543110000 00 011111110
Q ss_pred -CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecC---CCeEEEEEccCCCc
Q 017553 250 -GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR---EGKIFVWELQSSPP 325 (369)
Q Consensus 250 -~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~---dg~i~i~d~~~~~~ 325 (369)
|.-.. .-.+.++|+.+++... .............+..+.|+++++..++..... ...+.++|..++..
T Consensus 151 ~G~~np----~v~l~v~~~~~~~~~~----~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~ 222 (353)
T PF00930_consen 151 AGDPNP----RVSLFVVDLASGKTTE----LDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGET 222 (353)
T ss_dssp TTS-------EEEEEEEESSSTCCCE----E---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTC
T ss_pred CCCcCC----ceEEEEEECCCCcEEE----eeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCce
Confidence 21110 1136668887765320 001111223356688899999986223333332 23477788887766
Q ss_pred eeEEEeecCCCccceEEEEec-CCCC-EEEEeecCCeEEEEec
Q 017553 326 VLIARLSHAQSKSPIRQTAMS-YDGS-TILSCCEDGAIWRWDA 366 (369)
Q Consensus 326 ~~~~~~~~~~~~~~v~~~~~s-~~~~-~l~s~~~dg~i~vw~~ 366 (369)
..+......+--..-....|. +++. +|.....||.-+||-+
T Consensus 223 ~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~ 265 (353)
T PF00930_consen 223 RVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLY 265 (353)
T ss_dssp EEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEE
T ss_pred eEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEE
Confidence 555544433322333355554 5554 5555557776555543
No 359
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.86 E-value=3.5e-05 Score=40.98 Aligned_cols=38 Identities=29% Similarity=0.632 Sum_probs=32.8
Q ss_pred cccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEE
Q 017553 119 KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN 157 (369)
Q Consensus 119 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd 157 (369)
++...+..|...|.++.|.+ ....+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 34566677889999999999 778999999999999996
No 360
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.86 E-value=0.017 Score=51.35 Aligned_cols=157 Identities=12% Similarity=0.111 Sum_probs=90.5
Q ss_pred CCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEe--------------------------
Q 017553 95 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS-------------------------- 148 (369)
Q Consensus 95 ~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-------------------------- 148 (369)
|||+.+....-..+.+.+.|.++.+...++.- .+....++++| ++.++++.+
T Consensus 202 nDGk~l~~~~ey~~~vSvID~etmeV~~qV~V-dgnpd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~ 279 (635)
T PRK02888 202 NDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV-DGNLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA 279 (635)
T ss_pred CCCCEeecccceeEEEEEEECccceEEEEEEe-CCCcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEEEchH
Confidence 56652223334456778888877666655543 22345566777 555555443
Q ss_pred --------------CCCcEEEEEccC-----CcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCcee
Q 017553 149 --------------KDESVRLWNVQT-----GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWT 209 (369)
Q Consensus 149 --------------~dg~i~vwd~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~ 209 (369)
.++.|.+.|..+ .+.+..+. -......+.++|++...++++..+.+|.++|+.+.+.
T Consensus 280 ~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIP----VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~ 355 (635)
T PRK02888 280 RIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVP----VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDD 355 (635)
T ss_pred HHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEE----CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhh
Confidence 124577888776 34455554 5566788999994444455556689999999998543
Q ss_pred eeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEEEecCCC
Q 017553 210 YVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKM 269 (369)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~ 269 (369)
.....+... ...+..... .......+|+ |....+-..|..|..||+..
T Consensus 356 ~~~~~~~~~-----------~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 356 LFDGKIKPR-----------DAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhhccCCcc-----------ceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 221111000 001111111 1222334555 55677777899999999876
No 361
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.85 E-value=8.8e-05 Score=39.31 Aligned_cols=36 Identities=33% Similarity=0.603 Sum_probs=30.8
Q ss_pred EEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEe
Q 017553 328 IARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 365 (369)
Q Consensus 328 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~ 365 (369)
...+. .|...|.++.|++++.++++++.|+.+++|+
T Consensus 5 ~~~~~--~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLK--GHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEE--ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34444 6667899999999999999999999999996
No 362
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.83 E-value=0.009 Score=46.91 Aligned_cols=102 Identities=21% Similarity=0.184 Sum_probs=67.5
Q ss_pred EEEEEeeccCCCccEEEEecCCc--EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeec-----CCe
Q 017553 37 YAVVFNFIDSRYFNVFATVGGNR--VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI-----NGI 109 (369)
Q Consensus 37 ~~~~~s~~~~~~~~~la~~~~~~--v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~-----dg~ 109 (369)
..|+|+|. ...-++.+-.-+ ..++|....+.+..+...... -.+. .=.|+|||. +|++.-. -|.
T Consensus 71 Hgi~~~p~---~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~R----HfyG-HGvfs~dG~-~LYATEndfd~~rGV 141 (366)
T COG3490 71 HGIAFHPA---LPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGR----HFYG-HGVFSPDGR-LLYATENDFDPNRGV 141 (366)
T ss_pred CCeecCCC---CcceEEEEecCCceEEEECCCCCcCcEEEecccCc----eeec-ccccCCCCc-EEEeecCCCCCCCce
Confidence 35788885 245566666554 889998887777666542211 1111 113559999 7766533 378
Q ss_pred EEEEEcCCc-cccceeeccccceEEEEecCCCCceEEEEe
Q 017553 110 IRVIDVSNE-KLHKSFVGHGDSINEIRTQPLKPSLVVSAS 148 (369)
Q Consensus 110 i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 148 (369)
|-|||.+.+ +.+.++..|.-....+.|.+ |+..++.+.
T Consensus 142 iGvYd~r~~fqrvgE~~t~GiGpHev~lm~-DGrtlvvan 180 (366)
T COG3490 142 IGVYDAREGFQRVGEFSTHGIGPHEVTLMA-DGRTLVVAN 180 (366)
T ss_pred EEEEecccccceecccccCCcCcceeEEec-CCcEEEEeC
Confidence 999998754 45677777877778899999 787777653
No 363
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.75 E-value=0.0063 Score=52.40 Aligned_cols=203 Identities=12% Similarity=0.012 Sum_probs=105.4
Q ss_pred CeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEE---eCC-CcEEEEEccCCcEEEEeeccCCCCCcEEEEEec
Q 017553 108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSA---SKD-ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFH 183 (369)
Q Consensus 108 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~---~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 183 (369)
..+.+-|.+ +...+.+..-...+..-+|+| ++..++-. ... ..+.++|+.+++...... ..+.-..-+|+
T Consensus 173 ~~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~----~~g~~~~P~fs 246 (425)
T COG0823 173 YELALGDYD-GYNQQKLTDSGSLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN----FNGNNGAPAFS 246 (425)
T ss_pred ceEEEEccC-CcceeEecccCcceeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeec----cCCccCCccCC
Confidence 344444533 444555554556677788999 55543332 222 459999999887766654 34444567899
Q ss_pred CCCceEEEEEeeCCc--EEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeeeCcEEEEe-ecCC
Q 017553 184 PSDIYRIASCGMDNT--VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSK-SVDN 260 (369)
Q Consensus 184 ~~~~~~l~~~~~d~~--v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~-~~d~ 260 (369)
|++..++++...||. |.++|+...... .+....+... -.+...+|+.++-. +..|
T Consensus 247 pDG~~l~f~~~rdg~~~iy~~dl~~~~~~---------------------~Lt~~~gi~~-~Ps~spdG~~ivf~Sdr~G 304 (425)
T COG0823 247 PDGSKLAFSSSRDGSPDIYLMDLDGKNLP---------------------RLTNGFGINT-SPSWSPDGSKIVFTSDRGG 304 (425)
T ss_pred CCCCEEEEEECCCCCccEEEEcCCCCcce---------------------ecccCCcccc-CccCCCCCCEEEEEeCCCC
Confidence 966666667777775 555666653200 0111111111 12222336665544 4455
Q ss_pred e--EEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCe--EEEEEccCCCceeEEEeecCCC
Q 017553 261 E--IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGK--IFVWELQSSPPVLIARLSHAQS 336 (369)
Q Consensus 261 ~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~ 336 (369)
. |.++++..... ..+......-..-.|+|+++. ++.....+|. |.+.|+.++.. ...+...
T Consensus 305 ~p~I~~~~~~g~~~----------~riT~~~~~~~~p~~SpdG~~-i~~~~~~~g~~~i~~~~~~~~~~--~~~lt~~-- 369 (425)
T COG0823 305 RPQIYLYDLEGSQV----------TRLTFSGGGNSNPVWSPDGDK-IVFESSSGGQWDIDKNDLASGGK--IRILTST-- 369 (425)
T ss_pred CcceEEECCCCCce----------eEeeccCCCCcCccCCCCCCE-EEEEeccCCceeeEEeccCCCCc--EEEcccc--
Confidence 5 55666655531 222222222225679999983 3333333455 77777776642 3333321
Q ss_pred ccceEEEEecCCCCEEEE
Q 017553 337 KSPIRQTAMSYDGSTILS 354 (369)
Q Consensus 337 ~~~v~~~~~s~~~~~l~s 354 (369)
.....-.|.++|..+..
T Consensus 370 -~~~e~ps~~~ng~~i~~ 386 (425)
T COG0823 370 -YLNESPSWAPNGRMIMF 386 (425)
T ss_pred -ccCCCCCcCCCCceEEE
Confidence 22333455666655443
No 364
>PHA02713 hypothetical protein; Provisional
Probab=97.75 E-value=0.0074 Score=54.37 Aligned_cols=193 Identities=10% Similarity=0.071 Sum_probs=96.9
Q ss_pred CCCccEEEEeecC------CeEEEEEcCCccc--cceeeccccceEEEEecCCCCceEEEEeCCC-----cEEEEEccCC
Q 017553 95 VDGIPFLVAGGIN------GIIRVIDVSNEKL--HKSFVGHGDSINEIRTQPLKPSLVVSASKDE-----SVRLWNVQTG 161 (369)
Q Consensus 95 ~~g~~~l~~~~~d------g~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~ 161 (369)
.++. +.+.|+.+ ..+..||..+.+. +..+....... +++.. ++.+.+.||.++ .+..||..++
T Consensus 302 l~~~-IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~ 377 (557)
T PHA02713 302 VDNE-IIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLAVI--DDTIYAIGGQNGTNVERTIECYTMGDD 377 (557)
T ss_pred ECCE-EEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEEEE--CCEEEEECCcCCCCCCceEEEEECCCC
Confidence 3555 77777753 3477888776642 22222111122 22222 567778888754 4888998876
Q ss_pred cEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCC-----------------------cEEEEEccCceeeeeeeeecc
Q 017553 162 ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN-----------------------TVKIWSMKEFWTYVEKSFTWT 218 (369)
Q Consensus 162 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-----------------------~v~i~d~~~~~~~~~~~~~~~ 218 (369)
+-.. +..+. +...-.+++.. ++.+.+.||.++ .+..||.++.. |.
T Consensus 378 ~W~~-~~~mp-~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~--------W~ 445 (557)
T PHA02713 378 KWKM-LPDMP-IALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI--------WE 445 (557)
T ss_pred eEEE-CCCCC-cccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe--------Ee
Confidence 5332 22111 11111122222 677888887653 35556665521 11
Q ss_pred CCCCCCCCceeecceeeeccCCCceeeeeeeCcEEEEeecC------CeEEEecCCC-CCCCCCCCccceeeeccCCCCC
Q 017553 219 DLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVD------NEIVLWEPKM-KEQSPGEGTADILQKYPVPECD 291 (369)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d------~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~ 291 (369)
.. ..+.........+..++...+.|+.+ ..+..||+.+ .+ ...+..++.+...
T Consensus 446 ~v-------------~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~-------W~~~~~m~~~r~~ 505 (557)
T PHA02713 446 TL-------------PNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNG-------WELITTTESRLSA 505 (557)
T ss_pred ec-------------CCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCC-------eeEccccCccccc
Confidence 00 01111111112233446666777654 2467888886 32 2223333332222
Q ss_pred eeEEEEeecCCccEEEEecCCC--eEEEEEccCCCcee
Q 017553 292 IWFIKFSCDFHYNAAAIGNREG--KIFVWELQSSPPVL 327 (369)
Q Consensus 292 i~~~~~s~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~ 327 (369)
...+.+ +++ +.++|+.+| .+..||..+.+...
T Consensus 506 ~~~~~~--~~~--iyv~Gg~~~~~~~e~yd~~~~~W~~ 539 (557)
T PHA02713 506 LHTILH--DNT--IMMLHCYESYMLQDTFNVYTYEWNH 539 (557)
T ss_pred ceeEEE--CCE--EEEEeeecceeehhhcCcccccccc
Confidence 222222 443 777888887 78889988876543
No 365
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.72 E-value=0.0013 Score=60.24 Aligned_cols=105 Identities=17% Similarity=0.232 Sum_probs=70.4
Q ss_pred CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEE
Q 017553 250 GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA 329 (369)
Q Consensus 250 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 329 (369)
+...+.|-.++.+..||+|-...... ......+ .......+++-+.+| +||+|+.+|.||+||--.. ....
T Consensus 542 ~e~tflGls~n~lfriDpR~~~~k~v---~~~~k~Y-~~~~~Fs~~aTt~~G---~iavgs~~G~IRLyd~~g~--~AKT 612 (794)
T PF08553_consen 542 NEQTFLGLSDNSLFRIDPRLSGNKLV---DSQSKQY-SSKNNFSCFATTEDG---YIAVGSNKGDIRLYDRLGK--RAKT 612 (794)
T ss_pred CCceEEEECCCceEEeccCCCCCcee---ecccccc-ccCCCceEEEecCCc---eEEEEeCCCcEEeecccch--hhhh
Confidence 34567778889999999986431000 0011122 223456777777777 8999999999999994332 2222
Q ss_pred EeecCCCccceEEEEecCCCCEEEEeecCCeEEEEec
Q 017553 330 RLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 366 (369)
Q Consensus 330 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~ 366 (369)
.++ +-..+|..|..+.||++|+..+. ..+.+++.
T Consensus 613 ~lp--~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 613 ALP--GLGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred cCC--CCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 333 55689999999999999987664 45666654
No 366
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.00033 Score=60.44 Aligned_cols=75 Identities=16% Similarity=0.149 Sum_probs=65.8
Q ss_pred ccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEE-EEEecCCCceEEEEEeeCCcEEEEEccC
Q 017553 128 GDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVL-SVDFHPSDIYRIASCGMDNTVKIWSMKE 206 (369)
Q Consensus 128 ~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~d~~v~i~d~~~ 206 (369)
...|.-+.|+| .-.++|.+..+|.|.+..+. .+.+..+. -+...++ +++|.| +|++|+.|-.||+|++.|+.+
T Consensus 20 ~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip---~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~ 93 (665)
T KOG4640|consen 20 PINIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIP---IPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEK 93 (665)
T ss_pred ccceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEecc---CCCCccceeeeecC-CCCEEEEEecCCeEEEEEccC
Confidence 34678899999 89999999999999999987 77778776 4666777 999999 899999999999999999998
Q ss_pred ce
Q 017553 207 FW 208 (369)
Q Consensus 207 ~~ 208 (369)
+.
T Consensus 94 ~~ 95 (665)
T KOG4640|consen 94 GG 95 (665)
T ss_pred CC
Confidence 54
No 367
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.64 E-value=0.042 Score=49.21 Aligned_cols=114 Identities=15% Similarity=0.099 Sum_probs=65.0
Q ss_pred ccEEEEecCCcEEEEEecCCceeEEEeeeccCCcccce-------eEEEeeecCCCccEEEEeecCCeEEEEEcCCcccc
Q 017553 49 FNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESF-------YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLH 121 (369)
Q Consensus 49 ~~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v-------~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~ 121 (369)
+.++++...+.|.-+|..+|+.+-......... .... ..+++ .+. .++.++.++.|..+|..+|+.+
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~-~~~~~~~~~~~rg~av----~~~-~v~v~t~dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDD-VIPVMCCDVVNRGVAL----YDG-KVFFGTLDARLVALDAKTGKVV 143 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcc-cccccccccccccceE----ECC-EEEEEcCCCEEEEEECCCCCEE
Confidence 344444444448888999998776654311100 0000 00111 123 5777888999999999999987
Q ss_pred ceeeccc-cceEEEEecC--CCCceEEEEe------CCCcEEEEEccCCcEEEEeec
Q 017553 122 KSFVGHG-DSINEIRTQP--LKPSLVVSAS------KDESVRLWNVQTGICILIFAG 169 (369)
Q Consensus 122 ~~~~~~~-~~v~~~~~~~--~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~ 169 (369)
....... ..-..+.-+| .++ .++.+. .+|.|.-+|.++|+.+..+..
T Consensus 144 W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 144 WSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred eecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 6654211 0000111111 033 344443 268999999999999988764
No 368
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.58 E-value=0.033 Score=46.50 Aligned_cols=147 Identities=12% Similarity=0.079 Sum_probs=76.3
Q ss_pred CccEEEEecC-Cc---EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccce
Q 017553 48 YFNVFATVGG-NR---VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKS 123 (369)
Q Consensus 48 ~~~~la~~~~-~~---v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~ 123 (369)
+|+.|+.+++ ++ +.+.|+.+++..+..... ........++ |+++ .++-......|+-.|+.+.+....
T Consensus 46 dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~-----g~~~~g~~~s--~~~~-~~~Yv~~~~~l~~vdL~T~e~~~v 117 (386)
T PF14583_consen 46 DGRKLLFASDFDGNRNLYLLDLATGEITQLTDGP-----GDNTFGGFLS--PDDR-ALYYVKNGRSLRRVDLDTLEERVV 117 (386)
T ss_dssp TS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS------B-TTT-EE---TTSS-EEEEEETTTEEEEEETTT--EEEE
T ss_pred CCCEEEEEeccCCCcceEEEEcccCEEEECccCC-----CCCccceEEe--cCCC-eEEEEECCCeEEEEECCcCcEEEE
Confidence 5655555443 43 888888887765554421 1122234444 7777 554444456888899988876544
Q ss_pred eeccccceEEEEec-CCCCceEEEEe----------------------CCCcEEEEEccCCcEEEEeeccCCCCCcEEEE
Q 017553 124 FVGHGDSINEIRTQ-PLKPSLVVSAS----------------------KDESVRLWNVQTGICILIFAGAGGHRNEVLSV 180 (369)
Q Consensus 124 ~~~~~~~v~~~~~~-~~~~~~l~s~~----------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~ 180 (369)
+......+-...|. +.++..++..- -.+.|.-.|+.+|+....+. -...+..+
T Consensus 118 y~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~----~~~wlgH~ 193 (386)
T PF14583_consen 118 YEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE----DTDWLGHV 193 (386)
T ss_dssp EE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE----ESS-EEEE
T ss_pred EECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe----cCccccCc
Confidence 44445555445554 22444443321 11346666888887666555 56778899
Q ss_pred EecCCCceEEEEEeeC---C-cEEEEEccC
Q 017553 181 DFHPSDIYRIASCGMD---N-TVKIWSMKE 206 (369)
Q Consensus 181 ~~~~~~~~~l~~~~~d---~-~v~i~d~~~ 206 (369)
.|+|.++.+|+-|-.. . .-|||-+++
T Consensus 194 ~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~ 223 (386)
T PF14583_consen 194 QFSPTDPTLIMFCHEGPWDLVDQRIWTINT 223 (386)
T ss_dssp EEETTEEEEEEEEE-S-TTTSS-SEEEEET
T ss_pred ccCCCCCCEEEEeccCCcceeceEEEEEEc
Confidence 9999777777766432 2 236777766
No 369
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.54 E-value=0.00046 Score=51.99 Aligned_cols=103 Identities=16% Similarity=0.160 Sum_probs=70.8
Q ss_pred EEEEeecCCeEEEEEcCCc-cccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCC-CcE
Q 017553 100 FLVAGGINGIIRVIDVSNE-KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR-NEV 177 (369)
Q Consensus 100 ~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~v 177 (369)
-+++|+.+|.|++|+.... ........-...|.++--.-.++.+..+++.||.|+.|+..-++.+.... .|+ .++
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g---~h~~~~~ 148 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG---QHNFESG 148 (238)
T ss_pred eEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeec---cccCCCc
Confidence 6999999999999997622 21222222223344443333356689999999999999999888777766 566 555
Q ss_pred EEEEecCCCceEEEEE--eeCCcEEEEEccC
Q 017553 178 LSVDFHPSDIYRIASC--GMDNTVKIWSMKE 206 (369)
Q Consensus 178 ~~~~~~~~~~~~l~~~--~~d~~v~i~d~~~ 206 (369)
..+.... .+.++..+ +.|..++.|++..
T Consensus 149 e~~ivv~-sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 149 EELIVVG-SDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ceeEEec-CCceEEeeccccchhhhhcchhh
Confidence 5555554 56667777 7778888888776
No 370
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.51 E-value=0.014 Score=52.55 Aligned_cols=189 Identities=15% Similarity=0.124 Sum_probs=106.1
Q ss_pred CCceEEEEeCC------CcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeC-C-----cEEEEEccCc
Q 017553 140 KPSLVVSASKD------ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD-N-----TVKIWSMKEF 207 (369)
Q Consensus 140 ~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-~-----~v~i~d~~~~ 207 (369)
.+.+++.||.+ ..+..+|..+++....... .....-.++++. ++.++++||.| | ++..||.+..
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m--~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPM--PSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCC--CcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCC
Confidence 45677777776 3678889888754433321 233334566666 67889999999 3 5677887773
Q ss_pred eeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeeeCcEEEEeecCCe-----EEEecCCCCCCCCCCCcccee
Q 017553 208 WTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNE-----IVLWEPKMKEQSPGEGTADIL 282 (369)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~-----i~i~d~~~~~~~~~~~~~~~~ 282 (369)
+ |.. +..+.............|...++|+.||. +..||..+.+= ..+
T Consensus 360 ~--------W~~-------------~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W-------~~v 411 (571)
T KOG4441|consen 360 Q--------WTP-------------VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKW-------TPV 411 (571)
T ss_pred c--------eec-------------cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcc-------ccc
Confidence 2 111 11122222222333334788889999875 77788776641 122
Q ss_pred eeccCCCCCeeEEEEeecCCccEEEEecCC------CeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEee
Q 017553 283 QKYPVPECDIWFIKFSCDFHYNAAAIGNRE------GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCC 356 (369)
Q Consensus 283 ~~~~~~~~~i~~~~~s~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 356 (369)
..+..... ......-++. +.++|+.+ ..+..||..+++...+..+.. ...... ++ .-++.+.+.||
T Consensus 412 a~m~~~r~--~~gv~~~~g~--iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~--~R~~~g-~a-~~~~~iYvvGG 483 (571)
T KOG4441|consen 412 APMLTRRS--GHGVAVLGGK--LYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNT--RRSGFG-VA-VLNGKIYVVGG 483 (571)
T ss_pred CCCCccee--eeEEEEECCE--EEEEcCcCCCccccceEEEEcCCCCceeecCCccc--ccccce-EE-EECCEEEEECC
Confidence 22221111 1112223443 56666633 467899999987766666652 112222 22 23677888888
Q ss_pred cCCe-----EEEEecCC
Q 017553 357 EDGA-----IWRWDAIP 368 (369)
Q Consensus 357 ~dg~-----i~vw~~~~ 368 (369)
.|+. |..||..+
T Consensus 484 ~~~~~~~~~VE~ydp~~ 500 (571)
T KOG4441|consen 484 FDGTSALSSVERYDPET 500 (571)
T ss_pred ccCCCccceEEEEcCCC
Confidence 7763 56666554
No 371
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.51 E-value=0.05 Score=46.65 Aligned_cols=263 Identities=15% Similarity=0.082 Sum_probs=144.9
Q ss_pred EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCC
Q 017553 60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPL 139 (369)
Q Consensus 60 v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 139 (369)
+.+++..+......+.... ....+... +++....++-.....+...+............-...-..++.++.
T Consensus 13 ~~v~~~~~~~~~~~~~~~~------~~~~v~~~--~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~ 84 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR------GPGGVAVN--PDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPA 84 (381)
T ss_pred eEEEeecccEEEEEeecCC------CCceeEEc--CccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCC
Confidence 5556655544444443211 22224444 777534444433335555554422211111111133457788884
Q ss_pred CCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEe--eCCcEEEEEccCceeeeeeeeec
Q 017553 140 KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG--MDNTVKIWSMKEFWTYVEKSFTW 217 (369)
Q Consensus 140 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~d~~v~i~d~~~~~~~~~~~~~~ 217 (369)
..+..+....+..|.+.|..+.+....... ......++++|.++...++-. .++++.+.|-.+.....
T Consensus 85 ~~~vyv~~~~~~~v~vid~~~~~~~~~~~v----G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~------ 154 (381)
T COG3391 85 GNKVYVTTGDSNTVSVIDTATNTVLGSIPV----GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA------ 154 (381)
T ss_pred CCeEEEecCCCCeEEEEcCcccceeeEeee----ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE------
Confidence 555677777779999999888777777653 236678999994445444444 36788888877733221
Q ss_pred cCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEe-ecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeE
Q 017553 218 TDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSK-SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWF 294 (369)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 294 (369)
....-..+ ..++++ |+.++.. ..++.|.+.|........ ......+. ....-..
T Consensus 155 -----------------~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~----~~~~P~~ 211 (381)
T COG3391 155 -----------------TIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVG----VGTGPAG 211 (381)
T ss_pred -----------------EEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccc----cCCCCce
Confidence 11111112 455554 6645444 478899999977664321 10000111 1123356
Q ss_pred EEEeecCCccEEEEec-CCCeEEEEEccCCCceeEEE-eecCCCccceEEEEecCCCCEEEEeec-CCeEEEEecC
Q 017553 295 IKFSCDFHYNAAAIGN-REGKIFVWELQSSPPVLIAR-LSHAQSKSPIRQTAMSYDGSTILSCCE-DGAIWRWDAI 367 (369)
Q Consensus 295 ~~~s~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~i~vw~~~ 367 (369)
+.+++++.+.+++... .++.+...|..++.. ... ... +.. ....+..+|+|..+.+... .+.+.+-|..
T Consensus 212 i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v--~~~~~~~-~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~ 283 (381)
T COG3391 212 IAVDPDGNRVYVANDGSGSNNVLKIDTATGNV--TATDLPV-GSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGA 283 (381)
T ss_pred EEECCCCCEEEEEeccCCCceEEEEeCCCceE--EEecccc-ccC-CCCceeECCCCCEEEEEecCCCeEEEEeCC
Confidence 8899999743333322 236899999888742 222 221 222 4556899999998887743 3667766654
No 372
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.50 E-value=0.054 Score=46.84 Aligned_cols=116 Identities=15% Similarity=0.098 Sum_probs=65.9
Q ss_pred ccceeEEEeeecCCCccEEEEeecC---CeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCc--EEEEE
Q 017553 83 EESFYTVSWACNVDGIPFLVAGGIN---GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDES--VRLWN 157 (369)
Q Consensus 83 ~~~v~~~~~~~~~~g~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~--i~vwd 157 (369)
...+..-+|+ |+++.+....-.. ..+.++++++++....+. ..+.-..-+|+|++..++++...||. |.+.|
T Consensus 192 ~~~~~~p~ws--~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~d 268 (425)
T COG0823 192 GSLILTPAWS--PDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMD 268 (425)
T ss_pred CcceeccccC--cCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEc
Confidence 3344455666 8887433332222 459999998887554443 33344567899955556666677775 55567
Q ss_pred ccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEcc
Q 017553 158 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMK 205 (369)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~ 205 (369)
+..++.. .+.. -.+.-..=.|+|++..+.++.+..|.-.||-..
T Consensus 269 l~~~~~~-~Lt~---~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~ 312 (425)
T COG0823 269 LDGKNLP-RLTN---GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYD 312 (425)
T ss_pred CCCCcce-eccc---CCccccCccCCCCCCEEEEEeCCCCCcceEEEC
Confidence 7666633 3442 222223567899444445555556654444443
No 373
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.45 E-value=0.036 Score=45.50 Aligned_cols=147 Identities=12% Similarity=0.038 Sum_probs=83.6
Q ss_pred cEEEEecCCcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecC------------CeEEEEEcCC
Q 017553 50 NVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN------------GIIRVIDVSN 117 (369)
Q Consensus 50 ~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~d------------g~i~vwd~~~ 117 (369)
..|++ +..++.+++..++.....+............+..... |+|. +..+... |.|+.++. .
T Consensus 78 g~Lv~-~~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~--pdG~--~wfgt~~~~~~~~~~~~~~G~lyr~~p-~ 151 (307)
T COG3386 78 GRLIA-CEHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVD--PDGR--IWFGDMGYFDLGKSEERPTGSLYRVDP-D 151 (307)
T ss_pred CeEEE-EccccEEEeccCCceeEEeccccCCCCcCCCCceeEc--CCCC--EEEeCCCccccCccccCCcceEEEEcC-C
Confidence 34444 3455777887666654444333222333455566666 8887 3333322 33444443 4
Q ss_pred ccccceeeccccceEEEEecCCCCceEEEE-eCCCcEEEEEccC--C----cEEEEeeccCCCCCcEEEEEecCCCceEE
Q 017553 118 EKLHKSFVGHGDSINEIRTQPLKPSLVVSA-SKDESVRLWNVQT--G----ICILIFAGAGGHRNEVLSVDFHPSDIYRI 190 (369)
Q Consensus 118 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~dg~i~vwd~~~--~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 190 (369)
+..++.+..+-..-+.|+|+| +++.|+.+ +..+.|.-|++.. + +...... ....+..-.++... ++++.
T Consensus 152 g~~~~l~~~~~~~~NGla~Sp-Dg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~--~~~~G~PDG~~vDa-dG~lw 227 (307)
T COG3386 152 GGVVRLLDDDLTIPNGLAFSP-DGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDF--DEEPGLPDGMAVDA-DGNLW 227 (307)
T ss_pred CCEEEeecCcEEecCceEECC-CCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEc--cCCCCCCCceEEeC-CCCEE
Confidence 555666665566678999999 66555544 5557888887752 1 1111111 12345556677776 77777
Q ss_pred EEEeeCC-cEEEEEccC
Q 017553 191 ASCGMDN-TVKIWSMKE 206 (369)
Q Consensus 191 ~~~~~d~-~v~i~d~~~ 206 (369)
+++..+| .|..|+.+.
T Consensus 228 ~~a~~~g~~v~~~~pdG 244 (307)
T COG3386 228 VAAVWGGGRVVRFNPDG 244 (307)
T ss_pred EecccCCceEEEECCCC
Confidence 5555554 899998873
No 374
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.44 E-value=0.046 Score=44.60 Aligned_cols=142 Identities=9% Similarity=0.036 Sum_probs=85.7
Q ss_pred CccEEEEecCCcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCcccccee---
Q 017553 48 YFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSF--- 124 (369)
Q Consensus 48 ~~~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~--- 124 (369)
.++.|+.|.++|+.+++.........+. +...|..+... ++-. .|++-+ |+.++++++..-......
T Consensus 6 ~~~~L~vGt~~Gl~~~~~~~~~~~~~i~------~~~~I~ql~vl--~~~~-~llvLs-d~~l~~~~L~~l~~~~~~~~~ 75 (275)
T PF00780_consen 6 WGDRLLVGTEDGLYVYDLSDPSKPTRIL------KLSSITQLSVL--PELN-LLLVLS-DGQLYVYDLDSLEPVSTSAPL 75 (275)
T ss_pred CCCEEEEEECCCEEEEEecCCccceeEe------ecceEEEEEEe--cccC-EEEEEc-CCccEEEEchhhccccccccc
Confidence 4788999988899999983333333322 22237778777 6555 444443 599999998765443311
Q ss_pred -----------eccccceEEEE-ecCCCCceEEEEeCCCcEEEEEccCC-----cEEEEeeccCCCCCcEEEEEecCCCc
Q 017553 125 -----------VGHGDSINEIR-TQPLKPSLVVSASKDESVRLWNVQTG-----ICILIFAGAGGHRNEVLSVDFHPSDI 187 (369)
Q Consensus 125 -----------~~~~~~v~~~~-~~~~~~~~l~s~~~dg~i~vwd~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~ 187 (369)
......+...+ -....+...+.......|.+|..... +..+.+. -...+.+++|.+
T Consensus 76 ~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~----lp~~~~~i~~~~--- 148 (275)
T PF00780_consen 76 AFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS----LPDPPSSIAFLG--- 148 (275)
T ss_pred cccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE----cCCCcEEEEEeC---
Confidence 11223444444 11213333344444468999988753 3455554 568899999983
Q ss_pred eEEEEEeeCCcEEEEEccCc
Q 017553 188 YRIASCGMDNTVKIWSMKEF 207 (369)
Q Consensus 188 ~~l~~~~~d~~v~i~d~~~~ 207 (369)
+.++.|.. ....+.|+.++
T Consensus 149 ~~i~v~~~-~~f~~idl~~~ 167 (275)
T PF00780_consen 149 NKICVGTS-KGFYLIDLNTG 167 (275)
T ss_pred CEEEEEeC-CceEEEecCCC
Confidence 45666654 45888898863
No 375
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.40 E-value=0.11 Score=48.21 Aligned_cols=297 Identities=13% Similarity=0.077 Sum_probs=142.4
Q ss_pred CCcCeEEEEEeecc--CCCccEEEEecCCc--EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecC
Q 017553 32 GKRPLYAVVFNFID--SRYFNVFATVGGNR--VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN 107 (369)
Q Consensus 32 h~~~v~~~~~s~~~--~~~~~~la~~~~~~--v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~d 107 (369)
.+..|.|+.++|.+ +...+++|.|..+. +.+--+.+.......+ ...+.-...|.-.++- .|+. +|.++..|
T Consensus 529 ~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~-l~~~~iPRSIl~~~~e--~d~~-yLlvalgd 604 (1096)
T KOG1897|consen 529 FEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQ-LSGEIIPRSILLTTFE--GDIH-YLLVALGD 604 (1096)
T ss_pred ecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeec-cCCCccchheeeEEee--ccce-EEEEEcCC
Confidence 45779999999853 22234788887666 3333333333322221 1112233444444444 5555 99999999
Q ss_pred CeEEEEEc--CCcccccee--eccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEE-e
Q 017553 108 GIIRVIDV--SNEKLHKSF--VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVD-F 182 (369)
Q Consensus 108 g~i~vwd~--~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~-~ 182 (369)
|.+.-|-+ .++..-..- .--..++.--.|+....+.+++++ |.-..+|.-+ ++.+..-- .-..+..++ |
T Consensus 605 G~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~s-drP~viY~~n-~kLv~spl----s~kev~~~c~f 678 (1096)
T KOG1897|consen 605 GALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALS-DRPTVIYSSN-GKLVYSPL----SLKEVNHMCPF 678 (1096)
T ss_pred ceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeC-CCCEEEEecC-CcEEEecc----chHHhhhhccc
Confidence 99876654 444332111 123456666666663444555444 4555555543 33322211 111222222 2
Q ss_pred cC-CCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCc-eeeeeeeCcEEEE---ee
Q 017553 183 HP-SDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY-VDCNRWLGDFILS---KS 257 (369)
Q Consensus 183 ~~-~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~l~~---~~ 257 (369)
+. ..+..++++. .+.+++.-++.-++...+++.....+ +.+..++.. ...+. +.+.-.+ .+
T Consensus 679 ~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~~~p------------rrI~~q~~sl~~~v~-s~r~e~~~~~~~ 744 (1096)
T KOG1897|consen 679 NSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLGESP------------RRICYQESSLTFGVL-SNRIESSAEYYG 744 (1096)
T ss_pred ccccCCceEEEec-CCceEEEEecchhhcceeeecCCCCh------------hheEecccceEEEEE-ecccccchhhcC
Confidence 21 1233455444 45677777776333222222111111 111111100 00000 0000000 01
Q ss_pred cC---CeEEEecCCCCCCCCCCCccceeeeccC--CC--CCeeEEEEeecCCccEEEEec----------CCCeEEEEEc
Q 017553 258 VD---NEIVLWEPKMKEQSPGEGTADILQKYPV--PE--CDIWFIKFSCDFHYNAAAIGN----------REGKIFVWEL 320 (369)
Q Consensus 258 ~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~--~~i~~~~~s~~~~~~~l~~~~----------~dg~i~i~d~ 320 (369)
.. ..++++|-++.+. +...+. .+ ..+.++.|..|.. .++++|+ ..|+|.+|..
T Consensus 745 ee~~~s~l~vlD~nTf~v---------l~~hef~~~E~~~Si~s~~~~~d~~-t~~vVGT~~v~Pde~ep~~GRIivfe~ 814 (1096)
T KOG1897|consen 745 EEYEVSFLRVLDQNTFEV---------LSSHEFERNETALSIISCKFTDDPN-TYYVVGTGLVYPDENEPVNGRIIVFEF 814 (1096)
T ss_pred CcceEEEEEEecCCceeE---------EeeccccccceeeeeeeeeecCCCc-eEEEEEEEeeccCCCCcccceEEEEEE
Confidence 11 2467777776542 222211 11 2455566877753 4677765 3689999998
Q ss_pred cC-CCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 321 QS-SPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 321 ~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
.. ++.+.+.+... .+.+.++.. -+|++||. -+..|++|+..+
T Consensus 815 ~e~~~L~~v~e~~v---~Gav~aL~~-fngkllA~--In~~vrLye~t~ 857 (1096)
T KOG1897|consen 815 EELNSLELVAETVV---KGAVYALVE-FNGKLLAG--INQSVRLYEWTT 857 (1096)
T ss_pred ecCCceeeeeeeee---ccceeehhh-hCCeEEEe--cCcEEEEEEccc
Confidence 88 44444444432 255655553 26777764 456799988754
No 376
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.39 E-value=0.02 Score=53.25 Aligned_cols=99 Identities=13% Similarity=0.259 Sum_probs=71.2
Q ss_pred EEEEeecCCeEEEEEcCCc-cccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEE
Q 017553 100 FLVAGGINGIIRVIDVSNE-KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVL 178 (369)
Q Consensus 100 ~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~ 178 (369)
.++.|+..|.+-..|+... .+...=..-.++|++++|+. ++..++.|-.+|.|.+||+..++.++.+. .|..+.+
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~---e~~ap~t 176 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVIT---EHGAPVT 176 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeee---ecCCccc
Confidence 7889999999999887543 11111122457999999999 99999999999999999999999888887 3544443
Q ss_pred E---EEecCCCceEEEEEeeCCcEEEEEcc
Q 017553 179 S---VDFHPSDIYRIASCGMDNTVKIWSMK 205 (369)
Q Consensus 179 ~---~~~~~~~~~~l~~~~~d~~v~i~d~~ 205 (369)
. +.+.. ++..++++...|. +|.+.
T Consensus 177 ~vi~v~~t~-~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 177 GVIFVGRTS-QNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred eEEEEEEeC-CCcEEEEccCCCc--eEEEE
Confidence 3 33333 4556777777675 55543
No 377
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.37 E-value=0.046 Score=43.14 Aligned_cols=202 Identities=14% Similarity=0.058 Sum_probs=102.3
Q ss_pred cccceeEEEeeecCCCccEEEEeecCC--eEEEEEcCCccccceeeccc-cceEEEEecCCCCceEEEEeCCCcEEEEEc
Q 017553 82 KEESFYTVSWACNVDGIPFLVAGGING--IIRVIDVSNEKLHKSFVGHG-DSINEIRTQPLKPSLVVSASKDESVRLWNV 158 (369)
Q Consensus 82 ~~~~v~~~~~~~~~~g~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~ 158 (369)
|....+.-.+.+..+|. ++-+.+.-| .|+.+|+.+++......-.. ---..++.. ++.+..-.-.++...+||.
T Consensus 41 Hd~~aFTQGL~~~~~g~-LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~ 117 (264)
T PF05096_consen 41 HDPTAFTQGLEFLDDGT-LYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDP 117 (264)
T ss_dssp --TT-EEEEEEEEETTE-EEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEET
T ss_pred CCCcccCccEEecCCCE-EEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEcc
Confidence 55555555555547777 666666665 69999999998665443211 111233333 3345555567789999999
Q ss_pred cCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeecc
Q 017553 159 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV 238 (369)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (369)
.+-+.+..+. ..+.=..++. ++..|+.......++++|..+.+......+.....+ ...+..+..
T Consensus 118 ~tl~~~~~~~----y~~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~p--------v~~LNELE~ 182 (264)
T PF05096_consen 118 NTLKKIGTFP----YPGEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRP--------VSNLNELEY 182 (264)
T ss_dssp TTTEEEEEEE-----SSS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE-----------EEEEEE
T ss_pred ccceEEEEEe----cCCcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEE--------CCCcEeEEE
Confidence 9999988887 4455667774 444555555567899999887544333222211100 111223333
Q ss_pred CCCceeeeeeeCcEEEEeecCCeEEEecCCCCCCCCCCCccceeeec------cCCCCCeeEEEEeecCCccEEEEecC
Q 017553 239 HSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY------PVPECDIWFIKFSCDFHYNAAAIGNR 311 (369)
Q Consensus 239 ~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~------~~~~~~i~~~~~s~~~~~~~l~~~~~ 311 (369)
..+.|.+-.|. ...|...|..+++.............. .....-.+.||+.|..+ .++++|-.
T Consensus 183 i~G~IyANVW~---------td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~-~l~vTGK~ 251 (264)
T PF05096_consen 183 INGKIYANVWQ---------TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETD-RLFVTGKL 251 (264)
T ss_dssp ETTEEEEEETT---------SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTT-EEEEEETT
T ss_pred EcCEEEEEeCC---------CCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCC-EEEEEeCC
Confidence 34444444443 334444455444321100000011110 11135678899999887 57777743
No 378
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.37 E-value=0.0086 Score=50.35 Aligned_cols=215 Identities=14% Similarity=0.149 Sum_probs=93.8
Q ss_pred EEEEee-cCCeEEEEEcCCc----cccceeec---cc----cceEEEEecCCCCceEEEEe------CCCcEEEEEccCC
Q 017553 100 FLVAGG-INGIIRVIDVSNE----KLHKSFVG---HG----DSINEIRTQPLKPSLVVSAS------KDESVRLWNVQTG 161 (369)
Q Consensus 100 ~l~~~~-~dg~i~vwd~~~~----~~~~~~~~---~~----~~v~~~~~~~~~~~~l~s~~------~dg~i~vwd~~~~ 161 (369)
+|+..+ ..+.|+|.|+.+. ++.+.+.. +. .....+..-| ++++++++- .-|-+.+.|-++.
T Consensus 89 ~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp-~G~imIS~lGd~~G~g~Ggf~llD~~tf 167 (461)
T PF05694_consen 89 YLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLP-DGRIMISALGDADGNGPGGFVLLDGETF 167 (461)
T ss_dssp EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-S-S--EEEEEEEETTS-S--EEEEE-TTT-
T ss_pred cEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecC-CccEEEEeccCCCCCCCCcEEEEcCccc
Confidence 555554 7789999998743 33444432 11 1233444456 777888752 2256888888877
Q ss_pred cEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCC
Q 017553 162 ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN 241 (369)
Q Consensus 162 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (369)
+.........+....-+.+-|.| ..+.++|..... -+.+ ..+
T Consensus 168 ~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~-P~~~--~~G---------------------------------- 209 (461)
T PF05694_consen 168 EVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGA-PSMF--EKG---------------------------------- 209 (461)
T ss_dssp -EEEE--SB-TT------EEEET-TTTEEEE-B----HHHH--TT-----------------------------------
T ss_pred cccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCC-hhhc--ccC----------------------------------
Confidence 77777764323344457788888 777777765321 0000 000
Q ss_pred ceeeeeeeCcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCC--CCeeEEEEeecCCccEEEEec-CCCeEEEE
Q 017553 242 YVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPE--CDIWFIKFSCDFHYNAAAIGN-REGKIFVW 318 (369)
Q Consensus 242 ~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~s~~~~~~~l~~~~-~dg~i~i~ 318 (369)
|+..-+..+....++.+||+.+.+ .++.+.... .....+.|..+....+=++++ -.+.|..|
T Consensus 210 ------f~~~d~~~~~yG~~l~vWD~~~r~---------~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~ 274 (461)
T PF05694_consen 210 ------FNPEDLEAGKYGHSLHVWDWSTRK---------LLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRF 274 (461)
T ss_dssp --------TTTHHHH-S--EEEEEETTTTE---------EEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEE
T ss_pred ------CChhHhhcccccCeEEEEECCCCc---------EeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEE
Confidence 001111222334679999999877 555555443 234567776654422322222 33344444
Q ss_pred Ec-cCCCceeEE--EeecC---CC------------ccceEEEEecCCCCEEEEee-cCCeEEEEecCC
Q 017553 319 EL-QSSPPVLIA--RLSHA---QS------------KSPIRQTAMSYDGSTILSCC-EDGAIWRWDAIP 368 (369)
Q Consensus 319 d~-~~~~~~~~~--~~~~~---~~------------~~~v~~~~~s~~~~~l~s~~-~dg~i~vw~~~~ 368 (369)
-- ..++..... .+... +- ..-|+.+..|.|.++|..++ .+|.|+.||+.+
T Consensus 275 ~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 275 YKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp EE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred EEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence 33 444332222 22110 01 24579999999999887665 789999999975
No 379
>PHA03098 kelch-like protein; Provisional
Probab=97.36 E-value=0.039 Score=49.90 Aligned_cols=104 Identities=12% Similarity=0.080 Sum_probs=53.6
Q ss_pred CCCccEEEEeecCC------eEEEEEcCCcccc--ceeeccccceEEEEecCCCCceEEEEeCC-----CcEEEEEccCC
Q 017553 95 VDGIPFLVAGGING------IIRVIDVSNEKLH--KSFVGHGDSINEIRTQPLKPSLVVSASKD-----ESVRLWNVQTG 161 (369)
Q Consensus 95 ~~g~~~l~~~~~dg------~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~ 161 (369)
.++. +++.|+.++ .+..||..+.+.. ..+.........+.+ ++.+++.||.+ ..+..||..++
T Consensus 293 ~~~~-lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~ 368 (534)
T PHA03098 293 LNNV-IYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF---NNRIYVIGGIYNSISLNTVESWKPGES 368 (534)
T ss_pred ECCE-EEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE---CCEEEEEeCCCCCEecceEEEEcCCCC
Confidence 3455 677776543 4778887765432 111111111222222 56777888765 35778888766
Q ss_pred cEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeC------CcEEEEEccC
Q 017553 162 ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD------NTVKIWSMKE 206 (369)
Q Consensus 162 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------~~v~i~d~~~ 206 (369)
+-.. .... .+...-.+++.. ++.+++.||.+ ..+..||..+
T Consensus 369 ~W~~-~~~l-p~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t 415 (534)
T PHA03098 369 KWRE-EPPL-IFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNT 415 (534)
T ss_pred ceee-CCCc-CcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCC
Confidence 5332 1111 111111222332 66777777742 3577888776
No 380
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.35 E-value=0.088 Score=45.92 Aligned_cols=246 Identities=11% Similarity=0.101 Sum_probs=123.5
Q ss_pred eEEEEEeeccCCCccEEEEe----cCCc--EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeec---
Q 017553 36 LYAVVFNFIDSRYFNVFATV----GGNR--VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI--- 106 (369)
Q Consensus 36 v~~~~~s~~~~~~~~~la~~----~~~~--v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~--- 106 (369)
+....+|| +|+++|.+ |.+. ++++|+.+++.+...-. ......+.|. ++++.++.+...
T Consensus 126 ~~~~~~Sp----dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~------~~~~~~~~W~--~d~~~~~y~~~~~~~ 193 (414)
T PF02897_consen 126 LGGFSVSP----DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE------NPKFSSVSWS--DDGKGFFYTRFDEDQ 193 (414)
T ss_dssp EEEEEETT----TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE------EEESEEEEEC--TTSSEEEEEECSTTT
T ss_pred eeeeeECC----CCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc------ccccceEEEe--CCCCEEEEEEeCccc
Confidence 33567777 68888754 2333 99999999866543211 1111227887 888845555432
Q ss_pred -------CCeEEEEEcCCcccc--ceeeccccc--eEEEEecCCCCceEEE-EeCC---CcEEEEEccCC----cEEEEe
Q 017553 107 -------NGIIRVIDVSNEKLH--KSFVGHGDS--INEIRTQPLKPSLVVS-ASKD---ESVRLWNVQTG----ICILIF 167 (369)
Q Consensus 107 -------dg~i~vwd~~~~~~~--~~~~~~~~~--v~~~~~~~~~~~~l~s-~~~d---g~i~vwd~~~~----~~~~~~ 167 (369)
...|+.|.+.+...- ..+...... ...+..++ ++++|+. .... ..+.+.++..+ .....+
T Consensus 194 ~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~-d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l 272 (414)
T PF02897_consen 194 RTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK-DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLL 272 (414)
T ss_dssp SS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T-TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEE
T ss_pred ccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecC-cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEE
Confidence 234788888766433 333333322 56788888 6676554 3332 34788888764 223333
Q ss_pred eccCCCCCcEEEEEecCCCceEEEEEee---CCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCC--c
Q 017553 168 AGAGGHRNEVLSVDFHPSDIYRIASCGM---DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN--Y 242 (369)
Q Consensus 168 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~---d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 242 (369)
.. ...+....+... ++.+++.... .+.|...++..... ......+..+.. .
T Consensus 273 ~~--~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~--------------------~~~~~~l~~~~~~~~ 328 (414)
T PF02897_consen 273 SP--REDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSP--------------------AEWWTVLIPEDEDVS 328 (414)
T ss_dssp EE--SSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSG--------------------GGEEEEEE--SSSEE
T ss_pred eC--CCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEeccccccc--------------------ccceeEEcCCCCcee
Confidence 31 222333334443 4444444322 34566666665221 001112333333 4
Q ss_pred eeeeeeeCcEEEEe-ecCC--eEEEecCC-CCCCCCCCCccceeeeccCC-CCCeeEEEEeecCCccEEEEec--CCCeE
Q 017553 243 VDCNRWLGDFILSK-SVDN--EIVLWEPK-MKEQSPGEGTADILQKYPVP-ECDIWFIKFSCDFHYNAAAIGN--REGKI 315 (369)
Q Consensus 243 v~~~~~~~~~l~~~-~~d~--~i~i~d~~-~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~~~~~~l~~~~--~dg~i 315 (369)
+..+...+++|+.. ..++ .|+++++. ... ....... .+.+..+...++.+..++...+ .-+++
T Consensus 329 l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~----------~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~ 398 (414)
T PF02897_consen 329 LEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKE----------SREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTV 398 (414)
T ss_dssp EEEEEEETTEEEEEEEETTEEEEEEEETT-TEE----------EEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEE
T ss_pred EEEEEEECCEEEEEEEECCccEEEEEECCCCcE----------EeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEE
Confidence 56666666655544 4444 48889988 332 2222222 2334444444444422333332 34678
Q ss_pred EEEEccCCCceeE
Q 017553 316 FVWELQSSPPVLI 328 (369)
Q Consensus 316 ~i~d~~~~~~~~~ 328 (369)
+.||+.+++...+
T Consensus 399 y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 399 YRYDLATGELTLL 411 (414)
T ss_dssp EEEETTTTCEEEE
T ss_pred EEEECCCCCEEEE
Confidence 8889888865443
No 381
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.34 E-value=0.048 Score=43.28 Aligned_cols=167 Identities=10% Similarity=0.075 Sum_probs=106.1
Q ss_pred cccCCcCeEEEEEeeccCCCccEEEEecCCcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCC
Q 017553 29 LQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING 108 (369)
Q Consensus 29 ~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg 108 (369)
+.+-...|.++.|+|+ +..++++.....-.|+=..+|+.+..++-... ..--.+.+. .+|+ ++++--.++
T Consensus 81 i~g~~~nvS~LTynp~---~rtLFav~n~p~~iVElt~~GdlirtiPL~g~----~DpE~Ieyi--g~n~-fvi~dER~~ 150 (316)
T COG3204 81 ILGETANVSSLTYNPD---TRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF----SDPETIEYI--GGNQ-FVIVDERDR 150 (316)
T ss_pred cccccccccceeeCCC---cceEEEecCCCceEEEEecCCceEEEeccccc----CChhHeEEe--cCCE-EEEEehhcc
Confidence 3455566999999994 24455555544466676678888887764321 112235665 6676 777777888
Q ss_pred eEEEEEcCCccccc----------eeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCC-----
Q 017553 109 IIRVIDVSNEKLHK----------SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGH----- 173 (369)
Q Consensus 109 ~i~vwd~~~~~~~~----------~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~----- 173 (369)
.+.++.+.....+. .....+.....++|.| ..+.|+.+-+-.-+.|+.+..............+
T Consensus 151 ~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~ 229 (316)
T COG3204 151 ALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRD 229 (316)
T ss_pred eEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCcccccccccCcccccc
Confidence 88888776553211 1111256778999999 6666777777777888877643311111111112
Q ss_pred --CCcEEEEEecCCCceEEEEEeeCCcEEEEEccC
Q 017553 174 --RNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206 (369)
Q Consensus 174 --~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~ 206 (369)
-..|.++.|++..+.+++-+..++.+.-.|...
T Consensus 230 ~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 230 LFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred eEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence 234678889986778888888888888777766
No 382
>PHA03098 kelch-like protein; Provisional
Probab=97.33 E-value=0.028 Score=50.84 Aligned_cols=189 Identities=11% Similarity=0.062 Sum_probs=90.9
Q ss_pred CCceEEEEeCCC------cEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCC-----cEEEEEccCce
Q 017553 140 KPSLVVSASKDE------SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN-----TVKIWSMKEFW 208 (369)
Q Consensus 140 ~~~~l~s~~~dg------~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-----~v~i~d~~~~~ 208 (369)
++.+++.||.++ .+..||..+++... +......... .+++.. ++.+++.||.++ .+..||..+..
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~R~~-~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK-VPELIYPRKN-PGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeE-CCCCCccccc-ceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 456777776543 57788887766432 2211111111 122222 677888888653 46667766522
Q ss_pred eeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeeeCcEEEEeecC------CeEEEecCCCCCCCCCCCcccee
Q 017553 209 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVD------NEIVLWEPKMKEQSPGEGTADIL 282 (369)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~ 282 (369)
|...+ + +.............+...+.|+.+ +.+..||+.+.+= ..+
T Consensus 370 --------W~~~~----------~---lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W-------~~~ 421 (534)
T PHA03098 370 --------WREEP----------P---LIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKW-------SKG 421 (534)
T ss_pred --------eeeCC----------C---cCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCee-------eec
Confidence 11100 0 000001111222336666666632 4578888876531 111
Q ss_pred eeccCCCCCeeEEEEeecCCccEEEEecCC--------CeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEE
Q 017553 283 QKYPVPECDIWFIKFSCDFHYNAAAIGNRE--------GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILS 354 (369)
Q Consensus 283 ~~~~~~~~~i~~~~~s~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 354 (369)
..++..... .+ +...++. +.+.|+.+ ..+.+||..+.+...+..+... ......+.+ ++.+++.
T Consensus 422 ~~~p~~r~~-~~-~~~~~~~--iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~--r~~~~~~~~--~~~iyv~ 493 (534)
T PHA03098 422 SPLPISHYG-GC-AIYHDGK--IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP--RINASLCIF--NNKIYVV 493 (534)
T ss_pred CCCCccccC-ce-EEEECCE--EEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcc--cccceEEEE--CCEEEEE
Confidence 111111111 11 2233443 55566532 2388999988765444333211 111122222 6777777
Q ss_pred eecC-----CeEEEEecCC
Q 017553 355 CCED-----GAIWRWDAIP 368 (369)
Q Consensus 355 ~~~d-----g~i~vw~~~~ 368 (369)
|+.+ ..|.+||..+
T Consensus 494 GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 494 GGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred cCCcCCcccceeEEEeCCC
Confidence 7754 4678888764
No 383
>PHA02790 Kelch-like protein; Provisional
Probab=97.32 E-value=0.039 Score=48.96 Aligned_cols=186 Identities=10% Similarity=-0.047 Sum_probs=92.4
Q ss_pred CCceEEEEeCCC-----cEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCC--cEEEEEccCceeeee
Q 017553 140 KPSLVVSASKDE-----SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN--TVKIWSMKEFWTYVE 212 (369)
Q Consensus 140 ~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~--~v~i~d~~~~~~~~~ 212 (369)
++.+++.||.++ .+..||..+++.... ..+...... .+++.. ++.+.+.||.++ .+..||..+..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~-~~m~~~r~~-~~~v~~--~~~iYviGG~~~~~sve~ydp~~n~---- 342 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPI-PPMNSPRLY-ASGVPA--NNKLYVVGGLPNPTSVERWFHGDAA---- 342 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEEC-CCCCchhhc-ceEEEE--CCEEEEECCcCCCCceEEEECCCCe----
Confidence 456677777543 467788877654332 211111111 222322 678888888643 46677765421
Q ss_pred eeeeccCCCCCCCCceeecceeeeccCCCceeeeeeeCcEEEEeecCC---eEEEecCCCCCCCCCCCccceeeeccCCC
Q 017553 213 KSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDN---EIVLWEPKMKEQSPGEGTADILQKYPVPE 289 (369)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 289 (369)
|.. +..+.........+..++...+.|+.++ .+..||+++.. ...+..++.+.
T Consensus 343 ----W~~-------------~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~-------W~~~~~m~~~r 398 (480)
T PHA02790 343 ----WVN-------------MPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQ-------WQFGPSTYYPH 398 (480)
T ss_pred ----EEE-------------CCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCE-------EEeCCCCCCcc
Confidence 111 0111111111223334467777777553 46778876543 11111121111
Q ss_pred CCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecC-----CeEEEE
Q 017553 290 CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCED-----GAIWRW 364 (369)
Q Consensus 290 ~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-----g~i~vw 364 (369)
.. ..+..-+++ +.+.| |.+.+||..+++...+..+.. .......+. -++++.+.||.+ ..|.+|
T Consensus 399 ~~--~~~~~~~~~--IYv~G---G~~e~ydp~~~~W~~~~~m~~--~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Y 467 (480)
T PHA02790 399 YK--SCALVFGRR--LFLVG---RNAEFYCESSNTWTLIDDPIY--PRDNPELII--VDNKLLLIGGFYRGSYIDTIEVY 467 (480)
T ss_pred cc--ceEEEECCE--EEEEC---CceEEecCCCCcEeEcCCCCC--CccccEEEE--ECCEEEEECCcCCCcccceEEEE
Confidence 11 122234453 55555 457889998886655544432 122222222 367788888754 357788
Q ss_pred ecCC
Q 017553 365 DAIP 368 (369)
Q Consensus 365 ~~~~ 368 (369)
|..+
T Consensus 468 d~~~ 471 (480)
T PHA02790 468 NNRT 471 (480)
T ss_pred ECCC
Confidence 8765
No 384
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.31 E-value=0.0013 Score=36.50 Aligned_cols=31 Identities=16% Similarity=0.074 Sum_probs=28.4
Q ss_pred ccceEEEEecCCCCEEEEeecCCeEEEEecC
Q 017553 337 KSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 337 ~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 367 (369)
...|..++|+|...+||.++.+|.|.++.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3679999999999999999999999999874
No 385
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.21 E-value=0.0012 Score=36.69 Aligned_cols=35 Identities=14% Similarity=0.191 Sum_probs=30.2
Q ss_pred ccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEE
Q 017553 128 GDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICI 164 (369)
Q Consensus 128 ~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 164 (369)
...|.+++|+| ..++||.+..+|.|.++.+ +++.+
T Consensus 11 ~~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCP-TMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECC-CCCEEEEEECCCeEEEEEC-CCcCc
Confidence 35699999999 8899999999999999998 55543
No 386
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.16 E-value=0.085 Score=41.96 Aligned_cols=221 Identities=11% Similarity=0.151 Sum_probs=123.1
Q ss_pred eeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEE
Q 017553 124 FVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWS 203 (369)
Q Consensus 124 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d 203 (369)
+.+-...+.++.|+| +.+.|++......-.|+=-.+|+.++++.... -...-.+.+.. ++.+.++--.++.+.++.
T Consensus 81 i~g~~~nvS~LTynp-~~rtLFav~n~p~~iVElt~~GdlirtiPL~g--~~DpE~Ieyig-~n~fvi~dER~~~l~~~~ 156 (316)
T COG3204 81 ILGETANVSSLTYNP-DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG--FSDPETIEYIG-GNQFVIVDERDRALYLFT 156 (316)
T ss_pred cccccccccceeeCC-CcceEEEecCCCceEEEEecCCceEEEecccc--cCChhHeEEec-CCEEEEEehhcceEEEEE
Confidence 344556699999999 66666666666666666666788888876321 23345677775 777777777788898888
Q ss_pred ccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCC-ccc
Q 017553 204 MKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEG-TAD 280 (369)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~ 280 (369)
+.......... ....++......+...-.++|+ ...|+.+-.-+-+.||............ ...
T Consensus 157 vd~~t~~~~~~-------------~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~ 223 (316)
T COG3204 157 VDADTTVISAK-------------VQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLD 223 (316)
T ss_pred EcCCccEEecc-------------ceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccC
Confidence 77642222111 0011222222225566778887 5566666666667777665332110000 000
Q ss_pred eeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCC-----ccceEEEEecCCCCEEEEe
Q 017553 281 ILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQS-----KSPIRQTAMSYDGSTILSC 355 (369)
Q Consensus 281 ~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~s~ 355 (369)
+-......-..+.++.|.+... .+|+-+.+++.+.-.|..... .....+....| ......++..++|.+.+ .
T Consensus 224 ~~~~~~~f~~DvSgl~~~~~~~-~LLVLS~ESr~l~Evd~~G~~-~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYI-v 300 (316)
T COG3204 224 PTADRDLFVLDVSGLEFNAITN-SLLVLSDESRRLLEVDLSGEV-IELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYI-V 300 (316)
T ss_pred cccccceEeeccccceecCCCC-cEEEEecCCceEEEEecCCCe-eeeEEeccCCCCCcccCCCcceeEECCCCCEEE-E
Confidence 0001011123566778886655 477778888888888877652 22222221111 12345677777776444 3
Q ss_pred ecCCeEEEE
Q 017553 356 CEDGAIWRW 364 (369)
Q Consensus 356 ~~dg~i~vw 364 (369)
|+-+..+.+
T Consensus 301 SEPnlfy~F 309 (316)
T COG3204 301 SEPNLFYRF 309 (316)
T ss_pred ecCCcceec
Confidence 444444433
No 387
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.15 E-value=0.18 Score=45.76 Aligned_cols=150 Identities=14% Similarity=0.124 Sum_probs=80.9
Q ss_pred cCeEEEEEeeccCCCccEEEEec------CCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeec
Q 017553 34 RPLYAVVFNFIDSRYFNVFATVG------GNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI 106 (369)
Q Consensus 34 ~~v~~~~~s~~~~~~~~~la~~~------~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~ 106 (369)
..+.+.+++| +|+.+|... .+. -.||-...+.....+. .......-.|+ |+|. .|.+...
T Consensus 350 ~~vsspaiSp----dG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt------~g~~~t~PsWs--pDG~-~lw~v~d 416 (591)
T PRK13616 350 GNITSAALSR----SGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVL------EGHSLTRPSWS--LDAD-AVWVVVD 416 (591)
T ss_pred cCcccceECC----CCCEEEEEEeecCCCCCcceEEEEEeCCCcceeee------cCCCCCCceEC--CCCC-ceEEEec
Confidence 4578888999 577776654 233 3444332233222221 11124445666 8877 5555432
Q ss_pred ------------CCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEE---EEccCCcE-E---EEe
Q 017553 107 ------------NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRL---WNVQTGIC-I---LIF 167 (369)
Q Consensus 107 ------------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~v---wd~~~~~~-~---~~~ 167 (369)
.+.+.+.+++.+.... ...+.|..+.|+| ++..++... ++.|.+ -....|.. + ..+
T Consensus 417 g~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSp-DG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l 491 (591)
T PRK13616 417 GNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSR-DGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREV 491 (591)
T ss_pred CcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECC-CCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEe
Confidence 2344444555444333 2356799999999 777666655 477777 44344431 1 112
Q ss_pred eccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEcc
Q 017553 168 AGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMK 205 (369)
Q Consensus 168 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~ 205 (369)
.. +-...+.++.|.. ++.+ +++..++.-.+|.+.
T Consensus 492 ~~--~l~~~~~~l~W~~-~~~L-~V~~~~~~~~v~~v~ 525 (591)
T PRK13616 492 GP--GLGDTAVSLDWRT-GDSL-VVGRSDPEHPVWYVN 525 (591)
T ss_pred ec--ccCCccccceEec-CCEE-EEEecCCCCceEEEe
Confidence 11 2334468899997 6664 455555544455543
No 388
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.14 E-value=0.12 Score=43.34 Aligned_cols=253 Identities=12% Similarity=0.082 Sum_probs=105.2
Q ss_pred EecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCC--eEEEEEcCCccccceeeccccceEEEEecCCCC
Q 017553 64 QCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING--IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKP 141 (369)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 141 (369)
|..+|..+..+.......|.-..+.-+|. ++|+.+|+.+..+| .+.+.|+.+++..+.-.+-........++| +.
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft--~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~-~~ 92 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFT--DDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSP-DD 92 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B---TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-T-TS
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcC--CCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEec-CC
Confidence 44555555555433222233333344555 89986777776665 467778888776554443222233456678 55
Q ss_pred ceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecC-CCceEEEEEeeCC----------------------c
Q 017553 142 SLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHP-SDIYRIASCGMDN----------------------T 198 (369)
Q Consensus 142 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d~----------------------~ 198 (369)
+.++-......|+-.|+++.+....+. .....+-...|.. .++..++-.-... .
T Consensus 93 ~~~~Yv~~~~~l~~vdL~T~e~~~vy~---~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~ 169 (386)
T PF14583_consen 93 RALYYVKNGRSLRRVDLDTLEERVVYE---VPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCR 169 (386)
T ss_dssp SEEEEEETTTEEEEEETTT--EEEEEE-----TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EE
T ss_pred CeEEEEECCCeEEEEECCcCcEEEEEE---CCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCce
Confidence 666555555688899999887655555 3444454455532 1344333221100 1
Q ss_pred EEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee---CcEEEEeec---CCe-EEEecCCCCC
Q 017553 199 VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSV---DNE-IVLWEPKMKE 271 (369)
Q Consensus 199 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~---d~~-i~i~d~~~~~ 271 (369)
|.-.|+.++ ....+..-...+..+.|+ +.+|+-|.. +.. -|||-+++..
T Consensus 170 i~~idl~tG------------------------~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg 225 (386)
T PF14583_consen 170 IFTIDLKTG------------------------ERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDG 225 (386)
T ss_dssp EEEEETTT--------------------------EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS
T ss_pred EEEEECCCC------------------------ceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCC
Confidence 111111110 112222234455556665 445555543 221 3667665443
Q ss_pred CCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEE---ecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCC
Q 017553 272 QSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAI---GNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYD 348 (369)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~---~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 348 (369)
.. ..++... .....+.-=-|.|+|....... ++.+..|.-+|+.+++...+...+ ....+.-++|
T Consensus 226 ~~-----~~~v~~~-~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p------~~~H~~ss~D 293 (386)
T PF14583_consen 226 SN-----VKKVHRR-MEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMP------WCSHFMSSPD 293 (386)
T ss_dssp --------EESS----TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-------SEEEEEE-TT
T ss_pred Cc-----ceeeecC-CCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCC------ceeeeEEcCC
Confidence 21 1111111 1122233345888887322212 234556788888888654443332 3446667899
Q ss_pred CCEEEEeecC
Q 017553 349 GSTILSCCED 358 (369)
Q Consensus 349 ~~~l~s~~~d 358 (369)
|++++-=+.|
T Consensus 294 g~L~vGDG~d 303 (386)
T PF14583_consen 294 GKLFVGDGGD 303 (386)
T ss_dssp SSEEEEEE--
T ss_pred CCEEEecCCC
Confidence 9888654443
No 389
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.13 E-value=0.053 Score=46.58 Aligned_cols=145 Identities=13% Similarity=0.099 Sum_probs=90.4
Q ss_pred ccEEEEecCC--cEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCcc----EEEEeecCCeEEEEEcCCccc--
Q 017553 49 FNVFATVGGN--RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIP----FLVAGGINGIIRVIDVSNEKL-- 120 (369)
Q Consensus 49 ~~~la~~~~~--~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~----~l~~~~~dg~i~vwd~~~~~~-- 120 (369)
.+++...+.. +++-.|++.|+.+...... ..|.-+.+.+..++.+ .-+.|-.|..|.-||.+-...
T Consensus 345 snlil~~~~~~~~l~klDIE~GKIVeEWk~~------~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~k 418 (644)
T KOG2395|consen 345 SNLILMDGGEQDKLYKLDIERGKIVEEWKFE------DDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNK 418 (644)
T ss_pred cceEeeCCCCcCcceeeecccceeeeEeecc------CCcceeeccCCcchhcccccccEEeecCCceEEecccccCcce
Confidence 3455544433 3888999999998888742 2366666663222221 124456677888899863211
Q ss_pred cceeecc----ccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeC
Q 017553 121 HKSFVGH----GDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD 196 (369)
Q Consensus 121 ~~~~~~~----~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 196 (369)
+..-.+| .....|.+-. ...+|+.||.+|.||+||- .+..-.+.- ++-..+|..+..+. +|.+++..+ +
T Consensus 419 l~~~q~kqy~~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdr-i~~~AKTAl--PgLG~~I~hVdvta-dGKwil~Tc-~ 491 (644)
T KOG2395|consen 419 LAVVQSKQYSTKNNFSCFATT--ESGYIVVGSLKGDIRLYDR-IGRRAKTAL--PGLGDAIKHVDVTA-DGKWILATC-K 491 (644)
T ss_pred eeeeeccccccccccceeeec--CCceEEEeecCCcEEeehh-hhhhhhhcc--cccCCceeeEEeec-cCcEEEEec-c
Confidence 1112222 2344555554 4568999999999999997 444333322 27888999999998 777666544 5
Q ss_pred CcEEEEEccC
Q 017553 197 NTVKIWSMKE 206 (369)
Q Consensus 197 ~~v~i~d~~~ 206 (369)
..+.+.+..-
T Consensus 492 tyLlLi~t~~ 501 (644)
T KOG2395|consen 492 TYLLLIDTLI 501 (644)
T ss_pred cEEEEEEEec
Confidence 6777777654
No 390
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.13 E-value=0.08 Score=47.96 Aligned_cols=74 Identities=15% Similarity=0.038 Sum_probs=43.3
Q ss_pred CCCeeEEEEeecCCccEEEEecCCCeEEE---EEccCCCceeE--EEeecCCCccceEEEEecCCCCEEEEeecCCeEEE
Q 017553 289 ECDIWFIKFSCDFHYNAAAIGNREGKIFV---WELQSSPPVLI--ARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWR 363 (369)
Q Consensus 289 ~~~i~~~~~s~~~~~~~l~~~~~dg~i~i---~d~~~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~v 363 (369)
...|..+.|||||. .++... +|+|++ -....+..... ..+. ..-...+.++.|..++.++ ++..++...+
T Consensus 447 ~g~Issl~wSpDG~--RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~-~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v 521 (591)
T PRK13616 447 PGPISELQLSRDGV--RAAMII-GGKVYLAVVEQTEDGQYALTNPREVG-PGLGDTAVSLDWRTGDSLV-VGRSDPEHPV 521 (591)
T ss_pred CCCcCeEEECCCCC--EEEEEE-CCEEEEEEEEeCCCCceeecccEEee-cccCCccccceEecCCEEE-EEecCCCCce
Confidence 34689999999998 343332 477877 44444431111 1121 1222346889999998855 5555565666
Q ss_pred EecC
Q 017553 364 WDAI 367 (369)
Q Consensus 364 w~~~ 367 (369)
|.+.
T Consensus 522 ~~v~ 525 (591)
T PRK13616 522 WYVN 525 (591)
T ss_pred EEEe
Confidence 6654
No 391
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.08 E-value=0.0051 Score=56.92 Aligned_cols=113 Identities=13% Similarity=0.133 Sum_probs=76.0
Q ss_pred CceeeeeeeCcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEc
Q 017553 241 NYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL 320 (369)
Q Consensus 241 ~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~ 320 (369)
..+.+.+.-+..++.|+..|.+...|....-. +...-.....+|++++|+.+|. .++.|-.+|.|.+||.
T Consensus 90 ~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~--------~~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~ 159 (1206)
T KOG2079|consen 90 AGVISSAIVVVPIVIGTSHGHVLLSDMTGNLG--------PLHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDM 159 (1206)
T ss_pred cceeeeeeeeeeEEEEcCchhhhhhhhhcccc--------hhhcCCccCCcceeeEecCCCc--eeccccCCCcEEEEEc
Confidence 33444444577889999999999988876421 1222222357899999999996 8999999999999999
Q ss_pred cCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEec
Q 017553 321 QSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 366 (369)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~ 366 (369)
..++...........+ ..|..+.+..++..+.++...|. +|++
T Consensus 160 ~~~k~l~~i~e~~ap~-t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 160 HRAKILKVITEHGAPV-TGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred cCCcceeeeeecCCcc-ceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 9985433333222122 23444555556678888887775 5654
No 392
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.06 E-value=0.17 Score=43.52 Aligned_cols=194 Identities=14% Similarity=0.056 Sum_probs=117.7
Q ss_pred CCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEE-e--CCCcEEEEEccCCcEEEEeeccC
Q 017553 95 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSA-S--KDESVRLWNVQTGICILIFAGAG 171 (369)
Q Consensus 95 ~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~--~dg~i~vwd~~~~~~~~~~~~~~ 171 (369)
+.+.+..+....++.|.+.|..+.+......--. ....++++| +++.+..+ . .++.+.+.|..+++.+.....
T Consensus 83 ~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~v-- 158 (381)
T COG3391 83 PAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVTATIPV-- 158 (381)
T ss_pred CCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEEEEEec--
Confidence 7777566666667899999977776666555322 567899999 55544444 4 378999999999988888542
Q ss_pred CCCCcEEEEEecCCCce-EEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeecc-CCCceeeeeee
Q 017553 172 GHRNEVLSVDFHPSDIY-RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV-HSNYVDCNRWL 249 (369)
Q Consensus 172 ~~~~~v~~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~ 249 (369)
-..+ ..+++.| ++. .+++-..++.|.+.|........ . ........ .......+..+
T Consensus 159 -G~~P-~~~a~~p-~g~~vyv~~~~~~~v~vi~~~~~~v~~-~-----------------~~~~~~~~~~~P~~i~v~~~ 217 (381)
T COG3391 159 -GNTP-TGVAVDP-DGNKVYVTNSDDNTVSVIDTSGNSVVR-G-----------------SVGSLVGVGTGPAGIAVDPD 217 (381)
T ss_pred -CCCc-ceEEECC-CCCeEEEEecCCCeEEEEeCCCcceec-c-----------------ccccccccCCCCceEEECCC
Confidence 2233 8899999 555 55555578899999976621110 0 00000111 11122223334
Q ss_pred CcEEEEeecC---CeEEEecCCCCCCCCCCCccceeee-ccCCCCCeeEEEEeecCCccEEEEe-cCCCeEEEEEccCCC
Q 017553 250 GDFILSKSVD---NEIVLWEPKMKEQSPGEGTADILQK-YPVPECDIWFIKFSCDFHYNAAAIG-NREGKIFVWELQSSP 324 (369)
Q Consensus 250 ~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~~~l~~~-~~dg~i~i~d~~~~~ 324 (369)
+..+.+.... +.+...|..+... ... ..........+.++|++. .+.+. ...+.+.+.|..+..
T Consensus 218 g~~~yV~~~~~~~~~v~~id~~~~~v---------~~~~~~~~~~~~~~v~~~p~g~--~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 218 GNRVYVANDGSGSNNVLKIDTATGNV---------TATDLPVGSGAPRGVAVDPAGK--AAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred CCEEEEEeccCCCceEEEEeCCCceE---------EEeccccccCCCCceeECCCCC--EEEEEecCCCeEEEEeCCCCc
Confidence 6644444333 5888888887652 221 111111345678999997 44443 445889999988763
No 393
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.98 E-value=0.00036 Score=62.86 Aligned_cols=171 Identities=14% Similarity=0.165 Sum_probs=100.1
Q ss_pred ecccCCcCeEEEEEeeccCCCccEEEEecCCcEEEEEec--CCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEee
Q 017553 28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCL--EGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG 105 (369)
Q Consensus 28 ~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~ 105 (369)
.+++..+.|-.++|-..+.+.+.. --+.+.||++. .|+....+..+....-...+.-+.|++-.-.+-++..+-
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~~----~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~ 202 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGRR----LVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGL 202 (1283)
T ss_pred HHhcCCCCcccccccccCChHHHH----HhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeecc
Confidence 357788888888886543222221 11227788865 555444444433333445556677773322333788888
Q ss_pred cCCeEEEEEcCCccccceeeccccceEEEEe-----------cCCCCceEEEEeCCCcEEEEEcc-----CCcEEEEeec
Q 017553 106 INGIIRVIDVSNEKLHKSFVGHGDSINEIRT-----------QPLKPSLVVSASKDESVRLWNVQ-----TGICILIFAG 169 (369)
Q Consensus 106 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~-----------~~~~~~~l~s~~~dg~i~vwd~~-----~~~~~~~~~~ 169 (369)
.++.|++..+++... ..+++|...+..++| +| |+..++.+..||.+++|.+. .-+++...+
T Consensus 203 ~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSp-DGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewk- 279 (1283)
T KOG1916|consen 203 KGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSP-DGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWK- 279 (1283)
T ss_pred CCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCC-CCcEEEEeecCCccceeeeeeeccccHhhhhccC-
Confidence 899999988765432 555668776666554 78 89999999999999988764 223444444
Q ss_pred cCCCC-CcEEEEEecCCC--------ceEEEEEe-eCCcEEEEEccCc
Q 017553 170 AGGHR-NEVLSVDFHPSD--------IYRIASCG-MDNTVKIWSMKEF 207 (369)
Q Consensus 170 ~~~~~-~~v~~~~~~~~~--------~~~l~~~~-~d~~v~i~d~~~~ 207 (369)
.|. .+-.|.-|+.+. -.++++++ .+..+++|.-...
T Consensus 280 --phd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w 325 (1283)
T KOG1916|consen 280 --PHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPW 325 (1283)
T ss_pred --CCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccch
Confidence 354 333333343210 12333333 3446788876653
No 394
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.95 E-value=0.17 Score=41.71 Aligned_cols=207 Identities=11% Similarity=0.005 Sum_probs=108.5
Q ss_pred ccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeec-
Q 017553 49 FNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG- 126 (369)
Q Consensus 49 ~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~- 126 (369)
+.++.+--.++ |.-|+..+++.. .+. ....+.+.... ..+. .|+++.. -+.+++.+++..+..+..
T Consensus 37 ~~L~w~DI~~~~i~r~~~~~g~~~-~~~------~p~~~~~~~~~--d~~g-~Lv~~~~--g~~~~~~~~~~~~t~~~~~ 104 (307)
T COG3386 37 GALLWVDILGGRIHRLDPETGKKR-VFP------SPGGFSSGALI--DAGG-RLIACEH--GVRLLDPDTGGKITLLAEP 104 (307)
T ss_pred CEEEEEeCCCCeEEEecCCcCceE-EEE------CCCCcccceee--cCCC-eEEEEcc--ccEEEeccCCceeEEeccc
Confidence 33555555555 888887655432 222 12222333332 3333 4555543 356667655544322221
Q ss_pred ----cccceEEEEecCCCCceEEEEeC-----------CCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCc-eEE
Q 017553 127 ----HGDSINEIRTQPLKPSLVVSASK-----------DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDI-YRI 190 (369)
Q Consensus 127 ----~~~~v~~~~~~~~~~~~l~s~~~-----------dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l 190 (369)
.....+.+...| ++.+.++... -|.|+.+|. .+..++.+. .+-..-+.|+|+| ++ .++
T Consensus 105 ~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~---~~~~~~NGla~Sp-Dg~tly 178 (307)
T COG3386 105 EDGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLD---DDLTIPNGLAFSP-DGKTLY 178 (307)
T ss_pred cCCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeec---CcEEecCceEECC-CCCEEE
Confidence 123456777888 6665554332 133444443 455555554 3455567899999 55 444
Q ss_pred EEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCC-eEEEecC
Q 017553 191 ASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDN-EIVLWEP 267 (369)
Q Consensus 191 ~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~-~i~i~d~ 267 (369)
++=+..+.|.-|++........ ............+..-.++.+ |.+-+++..+| .|..|+.
T Consensus 179 ~aDT~~~~i~r~~~d~~~g~~~----------------~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~p 242 (307)
T COG3386 179 VADTPANRIHRYDLDPATGPIG----------------GRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNP 242 (307)
T ss_pred EEeCCCCeEEEEecCcccCccC----------------CcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECC
Confidence 5545557888888763100000 001122222344555555555 55554444444 8999998
Q ss_pred CCCCCCCCCCccceeeeccCCCCCeeEEEEee
Q 017553 268 KMKEQSPGEGTADILQKYPVPECDIWFIKFSC 299 (369)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 299 (369)
. ++ .+..+..+...+++++|--
T Consensus 243 d-G~---------l~~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 243 D-GK---------LLGEIKLPVKRPTNPAFGG 264 (307)
T ss_pred C-Cc---------EEEEEECCCCCCccceEeC
Confidence 8 54 5666666656677777764
No 395
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.91 E-value=0.37 Score=45.05 Aligned_cols=178 Identities=17% Similarity=0.163 Sum_probs=110.8
Q ss_pred EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCC-CccEEEEee----------cCCeEEEEEcCCccccceeecc-
Q 017553 60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD-GIPFLVAGG----------INGIIRVIDVSNEKLHKSFVGH- 127 (369)
Q Consensus 60 v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-g~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~~- 127 (369)
++++|-.+-+ .+..+.....+.....++..+..| +. ++++|. ..|.|.++.+..++.++....+
T Consensus 752 l~vlD~nTf~---vl~~hef~~~E~~~Si~s~~~~~d~~t-~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~ 827 (1096)
T KOG1897|consen 752 LRVLDQNTFE---VLSSHEFERNETALSIISCKFTDDPNT-YYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETV 827 (1096)
T ss_pred EEEecCCcee---EEeeccccccceeeeeeeeeecCCCce-EEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeee
Confidence 5555544433 333333322232222233333355 45 777774 3588999998774444444333
Q ss_pred -ccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccC
Q 017553 128 -GDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206 (369)
Q Consensus 128 -~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~ 206 (369)
.+.+.++... ++.++|. -...|++|++.+++.++.-. .+..++..+...- .+..++.|..-+.+.+...+.
T Consensus 828 v~Gav~aL~~f--ngkllA~--In~~vrLye~t~~~eLr~e~---~~~~~~~aL~l~v-~gdeI~VgDlm~Sitll~y~~ 899 (1096)
T KOG1897|consen 828 VKGAVYALVEF--NGKLLAG--INQSVRLYEWTTERELRIEC---NISNPIIALDLQV-KGDEIAVGDLMRSITLLQYKG 899 (1096)
T ss_pred eccceeehhhh--CCeEEEe--cCcEEEEEEccccceehhhh---cccCCeEEEEEEe-cCcEEEEeeccceEEEEEEec
Confidence 3555555543 4566654 44689999999887666655 5888888888886 788899998888777766655
Q ss_pred ceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee-CcEEEEeecCCeEEEecCCC
Q 017553 207 FWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKM 269 (369)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~i~d~~~ 269 (369)
.+. .........++.+++++.+- ++.++.+..+|.+.+....+
T Consensus 900 ~eg--------------------~f~evArD~~p~Wmtaveil~~d~ylgae~~gNlf~v~~d~ 943 (1096)
T KOG1897|consen 900 DEG--------------------NFEEVARDYNPNWMTAVEILDDDTYLGAENSGNLFTVRKDS 943 (1096)
T ss_pred cCC--------------------ceEEeehhhCccceeeEEEecCceEEeecccccEEEEEecC
Confidence 221 11222335677888888775 77777777888887766554
No 396
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.91 E-value=0.021 Score=48.85 Aligned_cols=139 Identities=13% Similarity=0.155 Sum_probs=91.3
Q ss_pred EEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCC------CceEEEEeCCCcEEEEEccCCcE--EEEeeccC
Q 017553 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLK------PSLVVSASKDESVRLWNVQTGIC--ILIFAGAG 171 (369)
Q Consensus 100 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~ 171 (369)
+|..+.....++-.|++.|+.+.+++-+.. |+-+.+.|+. ...-+.|-.|..|.-||++-... +...+
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q--- 423 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ--- 423 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee---
Confidence 455666667799999999999999997766 7888888731 12234566788999999874322 11111
Q ss_pred CC----CCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeee
Q 017553 172 GH----RNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNR 247 (369)
Q Consensus 172 ~~----~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 247 (369)
+| .....|++-. ...++++|+.+|.|++||--. ......+++-..+|..+.
T Consensus 424 ~kqy~~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdri~-----------------------~~AKTAlPgLG~~I~hVd 478 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATT--ESGYIVVGSLKGDIRLYDRIG-----------------------RRAKTALPGLGDAIKHVD 478 (644)
T ss_pred ccccccccccceeeec--CCceEEEeecCCcEEeehhhh-----------------------hhhhhcccccCCceeeEE
Confidence 22 2334555554 456799999999999999743 122334556667777766
Q ss_pred ee--CcEEEEeecCCeEEEecCC
Q 017553 248 WL--GDFILSKSVDNEIVLWEPK 268 (369)
Q Consensus 248 ~~--~~~l~~~~~d~~i~i~d~~ 268 (369)
.. |++++..+ +..+.+.++.
T Consensus 479 vtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 479 VTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred eeccCcEEEEec-ccEEEEEEEe
Confidence 54 77777654 4556555543
No 397
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.85 E-value=0.24 Score=42.09 Aligned_cols=253 Identities=15% Similarity=0.153 Sum_probs=107.1
Q ss_pred CccEEEEecCCc--EEEEEecCCceeEEEeeeccC--Cc--ccceeEEEeeecCCCccEEEEee------cCCeEEEEEc
Q 017553 48 YFNVFATVGGNR--VTVYQCLEGGVIAALQSYVDE--DK--EESFYTVSWACNVDGIPFLVAGG------INGIIRVIDV 115 (369)
Q Consensus 48 ~~~~la~~~~~~--v~iw~~~~~~~~~~~~~~~~~--~~--~~~v~~~~~~~~~~g~~~l~~~~------~dg~i~vwd~ 115 (369)
..++|+..+-.. |+|.|..+......+....++ .+ .+-..--...+-|+|+ +++++- .-|-+.++|-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~-imIS~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGR-IMISALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS---EEEEEEEETTS-S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCcc-EEEEeccCCCCCCCCcEEEEcC
Confidence 456777777443 999998844322222221111 01 1112222233338887 777652 2245778887
Q ss_pred CCccccceeecc---ccceEEEEecCCCCceEEEEeC--------------------CCcEEEEEccCCcEEEEeeccCC
Q 017553 116 SNEKLHKSFVGH---GDSINEIRTQPLKPSLVVSASK--------------------DESVRLWNVQTGICILIFAGAGG 172 (369)
Q Consensus 116 ~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~s~~~--------------------dg~i~vwd~~~~~~~~~~~~~~~ 172 (369)
++.+........ ..--..+-|.| ..+.++|... -.++.+||+.+.+.++.+.. +
T Consensus 165 ~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idL--g 241 (461)
T PF05694_consen 165 ETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDL--G 241 (461)
T ss_dssp TT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES---
T ss_pred ccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEec--C
Confidence 766655555432 22345677788 6677777642 35799999999999999874 2
Q ss_pred CC-CcEEEEEec--CCCceEEEEEeeCCcEEEEEc-cCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeee
Q 017553 173 HR-NEVLSVDFH--PSDIYRIASCGMDNTVKIWSM-KEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW 248 (369)
Q Consensus 173 ~~-~~v~~~~~~--~~~~~~l~~~~~d~~v~i~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 248 (369)
.. ..+..+.|. |....-++.+....+|..|-- +.+.-..+. +..+.
T Consensus 242 ~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~k-------------------Vi~ip----------- 291 (461)
T PF05694_consen 242 EEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEK-------------------VIDIP----------- 291 (461)
T ss_dssp TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEE-------------------EEEE------------
T ss_pred CCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeE-------------------EEECC-----------
Confidence 22 245677775 422333444444445544433 221110000 00000
Q ss_pred eCcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCC-Ccee
Q 017553 249 LGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS-PPVL 327 (369)
Q Consensus 249 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~ 327 (369)
...+.=|.+.. .++.+..-..-++.+.+|.|.++ +.++.-..|.|+.||+... .+++
T Consensus 292 ----------~~~v~~~~lp~-----------ml~~~~~~P~LitDI~iSlDDrf-LYvs~W~~GdvrqYDISDP~~Pkl 349 (461)
T PF05694_consen 292 ----------AKKVEGWILPE-----------MLKPFGAVPPLITDILISLDDRF-LYVSNWLHGDVRQYDISDPFNPKL 349 (461)
T ss_dssp -----------EE--SS---G-----------GGGGG-EE------EEE-TTS-E-EEEEETTTTEEEEEE-SSTTS-EE
T ss_pred ----------CcccCcccccc-----------cccccccCCCceEeEEEccCCCE-EEEEcccCCcEEEEecCCCCCCcE
Confidence 00111122211 22233333356788999999972 3345557899999999874 3455
Q ss_pred EEEeecCCC--------------ccceEEEEecCCCCEEEEee
Q 017553 328 IARLSHAQS--------------KSPIRQTAMSYDGSTILSCC 356 (369)
Q Consensus 328 ~~~~~~~~~--------------~~~v~~~~~s~~~~~l~s~~ 356 (369)
+.++...+. .+...-+..|-||++|...+
T Consensus 350 ~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 350 VGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp EEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 544432111 12346688888998876654
No 398
>PHA02790 Kelch-like protein; Provisional
Probab=96.85 E-value=0.28 Score=43.61 Aligned_cols=103 Identities=10% Similarity=0.011 Sum_probs=53.6
Q ss_pred CCccEEEEeecCC-----eEEEEEcCCccc--cceeeccccceEEEEecCCCCceEEEEeCC--CcEEEEEccCCcEEEE
Q 017553 96 DGIPFLVAGGING-----IIRVIDVSNEKL--HKSFVGHGDSINEIRTQPLKPSLVVSASKD--ESVRLWNVQTGICILI 166 (369)
Q Consensus 96 ~g~~~l~~~~~dg-----~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--g~i~vwd~~~~~~~~~ 166 (369)
++. ++++|+.++ .+..||..+++. +..+.........+.. ++.+.+.||.+ ..+..||..+++...
T Consensus 271 ~~~-lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~---~~~iYviGG~~~~~sve~ydp~~n~W~~- 345 (480)
T PHA02790 271 GEV-VYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPA---NNKLYVVGGLPNPTSVERWFHGDAAWVN- 345 (480)
T ss_pred CCE-EEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEE---CCEEEEECCcCCCCceEEEECCCCeEEE-
Confidence 344 667777543 466788776542 2222211111222222 56777777754 457888876654322
Q ss_pred eeccCCCCCcEEEEEecCCCceEEEEEeeCC---cEEEEEccC
Q 017553 167 FAGAGGHRNEVLSVDFHPSDIYRIASCGMDN---TVKIWSMKE 206 (369)
Q Consensus 167 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~---~v~i~d~~~ 206 (369)
+..+. ....-.+++.. ++.+.+.||.++ .+..||.++
T Consensus 346 ~~~l~-~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~ 385 (480)
T PHA02790 346 MPSLL-KPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNH 385 (480)
T ss_pred CCCCC-CCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCC
Confidence 22111 11111223333 678888888654 366777765
No 399
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=96.81 E-value=0.15 Score=46.51 Aligned_cols=174 Identities=7% Similarity=0.074 Sum_probs=93.3
Q ss_pred ceEEEEEeeCCcEEEEEccCceeeeeee--eeccCCCCCCCCceeecceeeeccCCCceeeeeee----CcEEEEeecCC
Q 017553 187 IYRIASCGMDNTVKIWSMKEFWTYVEKS--FTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL----GDFILSKSVDN 260 (369)
Q Consensus 187 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~l~~~~~d~ 260 (369)
.++++.+. .+.|.||+++......... ......+....... ....... .+..|..+... .+.|+.+..||
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D--~~~s~~p-~PHtIN~i~v~~lg~~EVLl~c~DdG 124 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPD--RLISTWP-FPHTINFIKVGDLGGEEVLLLCTDDG 124 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCcccccccc--ccccCCC-CCceeeEEEecccCCeeEEEEEecCC
Confidence 44555544 6899999988743322110 11111111111000 0111111 33445555443 55889999999
Q ss_pred eEEEecCCCCCC----C-------CCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEE
Q 017553 261 EIVLWEPKMKEQ----S-------PGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA 329 (369)
Q Consensus 261 ~i~i~d~~~~~~----~-------~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 329 (369)
.|.+|....--. . .......+...+.. ....+.+++......+++|+++....|.||-..........
T Consensus 125 ~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v-~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~ 203 (717)
T PF08728_consen 125 DVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRV-GASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYH 203 (717)
T ss_pred eEEEEEHHHHHHHHHhhccccccccccccCCCCeEeec-CCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccc
Confidence 999997632110 0 00001111122222 24788899882233358999998888888876553111111
Q ss_pred EeecCCCccceEEEEecCCC---C---EEEEeecCCeEEEEec
Q 017553 330 RLSHAQSKSPIRQTAMSYDG---S---TILSCCEDGAIWRWDA 366 (369)
Q Consensus 330 ~~~~~~~~~~v~~~~~s~~~---~---~l~s~~~dg~i~vw~~ 366 (369)
. ....+...|.+|.|-++. . .|++++-.|.+.+|++
T Consensus 204 ~-~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 204 V-PSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred c-cccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 1 011345678899997653 2 7888999999999887
No 400
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.72 E-value=0.42 Score=42.98 Aligned_cols=152 Identities=13% Similarity=0.075 Sum_probs=86.2
Q ss_pred EEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEee------cCCeEEEEEcCCccccce
Q 017553 51 VFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG------INGIIRVIDVSNEKLHKS 123 (369)
Q Consensus 51 ~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~------~dg~i~vwd~~~~~~~~~ 123 (369)
.++.+..++ +.-.|..+|+.+-....... .....+.+--.. .++. ++++. .+|.|..+|.++|+.+..
T Consensus 122 ~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~-~~~~~~tssP~v--~~g~--Vivg~~~~~~~~~G~v~AlD~~TG~~lW~ 196 (527)
T TIGR03075 122 KVFFGTLDARLVALDAKTGKVVWSKKNGDY-KAGYTITAAPLV--VKGK--VITGISGGEFGVRGYVTAYDAKTGKLVWR 196 (527)
T ss_pred EEEEEcCCCEEEEEECCCCCEEeecccccc-cccccccCCcEE--ECCE--EEEeecccccCCCcEEEEEECCCCceeEe
Confidence 344444444 89999889988766542110 000111111111 1343 44443 268999999999987655
Q ss_pred eeccc-------------------------------cceE-EEEecCCCCceEEEEeC-----CC-----------cEEE
Q 017553 124 FVGHG-------------------------------DSIN-EIRTQPLKPSLVVSASK-----DE-----------SVRL 155 (369)
Q Consensus 124 ~~~~~-------------------------------~~v~-~~~~~~~~~~~l~s~~~-----dg-----------~i~v 155 (369)
+..-. ..+. .+++.| ...+++.+.. ++ +|.-
T Consensus 197 ~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~-~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vA 275 (527)
T TIGR03075 197 RYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDP-ETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVA 275 (527)
T ss_pred ccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcC-CCCeEEEeCCCCCCCCCCCCCCCCccceeEEE
Confidence 43211 0111 345666 4455555431 12 6778
Q ss_pred EEccCCcEEEEeeccCCCCC-------cEEEEEecCCCc---eEEEEEeeCCcEEEEEccCceee
Q 017553 156 WNVQTGICILIFAGAGGHRN-------EVLSVDFHPSDI---YRIASCGMDNTVKIWSMKEFWTY 210 (369)
Q Consensus 156 wd~~~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~---~~l~~~~~d~~v~i~d~~~~~~~ 210 (369)
.|+++|+....++.. .|.. ...-+.+.. ++ ..++.+..+|.+.+.|.++++..
T Consensus 276 ld~~TG~~~W~~Q~~-~~D~wD~d~~~~p~l~d~~~-~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 276 RDPDTGKIKWHYQTT-PHDEWDYDGVNEMILFDLKK-DGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred EccccCCEEEeeeCC-CCCCccccCCCCcEEEEecc-CCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 899999999888742 1211 111122222 44 47889999999999999998654
No 401
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.59 E-value=0.11 Score=46.73 Aligned_cols=126 Identities=13% Similarity=0.203 Sum_probs=74.9
Q ss_pred ceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccE
Q 017553 22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF 100 (369)
Q Consensus 22 ~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~ 100 (369)
.|.....+..--....-+.-|. -++..++-+... +.|||...+... .-..+ ...+.|.++.|...|+|+ .
T Consensus 18 ~w~~t~~~~T~i~~~~li~gss----~~k~a~V~~~~~~LtIWD~~~~~lE-~~~~f---~~~~~I~dLDWtst~d~q-s 88 (631)
T PF12234_consen 18 EWLLTSTFETGISNPSLISGSS----IKKIAVVDSSRSELTIWDTRSGVLE-YEESF---SEDDPIRDLDWTSTPDGQ-S 88 (631)
T ss_pred EEEEEEEEecCCCCcceEeecc----cCcEEEEECCCCEEEEEEcCCcEEE-Eeeee---cCCCceeeceeeecCCCC-E
Confidence 3444444443333444444444 233333333333 999998766632 22222 357899999999999999 6
Q ss_pred EEEeecCCeEEEEEcC-----Cc----ccccee--eccc-cceEEEEecCCCCceEEEEeCCCcEEEEEcc
Q 017553 101 LVAGGINGIIRVIDVS-----NE----KLHKSF--VGHG-DSINEIRTQPLKPSLVVSASKDESVRLWNVQ 159 (369)
Q Consensus 101 l~~~~~dg~i~vwd~~-----~~----~~~~~~--~~~~-~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~ 159 (369)
+++.+..+.|.++.-. .. ..++.+ ..|+ .+|.+..|.+ ++.+++.++ +.+.|+|-.
T Consensus 89 iLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~-~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 89 ILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLK-DGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred EEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEec-CCeEEEEeC--CEEEEECCC
Confidence 6666667788887531 11 122322 2344 5899999998 776665444 468887643
No 402
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.57 E-value=0.33 Score=39.82 Aligned_cols=156 Identities=11% Similarity=0.085 Sum_probs=72.9
Q ss_pred cccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEcc-C
Q 017553 82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ-T 160 (369)
Q Consensus 82 ~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~-~ 160 (369)
....+..+... ++|+ +++++.......-||.-...-...-+.....|..|.|.| ++.+.+. ...|.|++=+.. .
T Consensus 143 ~~gs~~~~~r~--~dG~-~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~-~~~lw~~-~~Gg~~~~s~~~~~ 217 (302)
T PF14870_consen 143 TSGSINDITRS--SDGR-YVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSP-DGNLWML-ARGGQIQFSDDPDD 217 (302)
T ss_dssp ----EEEEEE---TTS--EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-T-TS-EEEE-ETTTEEEEEE-TTE
T ss_pred CcceeEeEEEC--CCCc-EEEEECcccEEEEecCCCccceEEccCccceehhceecC-CCCEEEE-eCCcEEEEccCCCC
Confidence 44566666655 9998 777776655566777432212222223457899999999 6665554 488888887722 2
Q ss_pred CcEEEE-eeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccC
Q 017553 161 GICILI-FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH 239 (369)
Q Consensus 161 ~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (369)
.+.... +.......-.+..++|.+ ++...++|+ .|.+. ...+.++.-.+. .....-
T Consensus 218 ~~~w~~~~~~~~~~~~~~ld~a~~~-~~~~wa~gg-~G~l~-~S~DgGktW~~~--------------------~~~~~~ 274 (302)
T PF14870_consen 218 GETWSEPIIPIKTNGYGILDLAYRP-PNEIWAVGG-SGTLL-VSTDGGKTWQKD--------------------RVGENV 274 (302)
T ss_dssp EEEE---B-TTSS--S-EEEEEESS-SS-EEEEES-TT-EE-EESSTTSS-EE---------------------GGGTTS
T ss_pred ccccccccCCcccCceeeEEEEecC-CCCEEEEeC-CccEE-EeCCCCccceEC--------------------ccccCC
Confidence 222111 111111233489999997 666666555 45443 333333211110 011122
Q ss_pred CCceeeeeee-CcEEEEeecCCeEEEe
Q 017553 240 SNYVDCNRWL-GDFILSKSVDNEIVLW 265 (369)
Q Consensus 240 ~~~v~~~~~~-~~~l~~~~~d~~i~i~ 265 (369)
+.-+..+.|. ++.-++.+.+|.|.-|
T Consensus 275 ~~n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 275 PSNLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp SS---EEEEEETTEEEEE-STTEEEEE
T ss_pred CCceEEEEEcCCCceEEECCCcEEEEe
Confidence 3445666664 5566666788877655
No 403
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.56 E-value=0.28 Score=38.92 Aligned_cols=171 Identities=8% Similarity=-0.044 Sum_probs=102.9
Q ss_pred cceeeeeecccC-CcCeEEEEEeeccCCCccEEEEecCCc---EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCC
Q 017553 21 REYRVTNKLQEG-KRPLYAVVFNFIDSRYFNVFATVGGNR---VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD 96 (369)
Q Consensus 21 ~~~~~~~~~~~h-~~~v~~~~~s~~~~~~~~~la~~~~~~---v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 96 (369)
..++++.++... ..-...+.|.. +|.++-+.|.-+ |+.+|+.+++......- ......+.+ +.. +
T Consensus 31 ~~~~vv~~ypHd~~aFTQGL~~~~----~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l-~~~~FgEGi---t~~---~ 99 (264)
T PF05096_consen 31 YSYEVVETYPHDPTAFTQGLEFLD----DGTLYESTGLYGQSSLRKVDLETGKVLQSVPL-PPRYFGEGI---TIL---G 99 (264)
T ss_dssp EEEEEEEEEE--TT-EEEEEEEEE----TTEEEEEECSTTEEEEEEEETTTSSEEEEEE--TTT--EEEE---EEE---T
T ss_pred eeeEEEEECCCCCcccCccEEecC----CCEEEEeCCCCCcEEEEEEECCCCcEEEEEEC-CccccceeE---EEE---C
Confidence 356777776432 23356688865 478888877554 99999999987665442 111222232 221 2
Q ss_pred CccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccC--CCC
Q 017553 97 GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAG--GHR 174 (369)
Q Consensus 97 g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--~~~ 174 (369)
++ +....-.++...+||..+-+.+.++. ..+.=+.++. ++..|+.......++++|..+.+....+.... ..-
T Consensus 100 d~-l~qLTWk~~~~f~yd~~tl~~~~~~~-y~~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv 174 (264)
T PF05096_consen 100 DK-LYQLTWKEGTGFVYDPNTLKKIGTFP-YPGEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPV 174 (264)
T ss_dssp TE-EEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE-
T ss_pred CE-EEEEEecCCeEEEEccccceEEEEEe-cCCcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEEC
Confidence 33 55556678999999999888888876 3455677773 45566666667899999998887777665311 011
Q ss_pred CcEEEEEecCCCceEEEEEeeCCcEEEEEccCcee
Q 017553 175 NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWT 209 (369)
Q Consensus 175 ~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~ 209 (369)
..++-+.|. ++...+-.-....|...|..++..
T Consensus 175 ~~LNELE~i--~G~IyANVW~td~I~~Idp~tG~V 207 (264)
T PF05096_consen 175 SNLNELEYI--NGKIYANVWQTDRIVRIDPETGKV 207 (264)
T ss_dssp --EEEEEEE--TTEEEEEETTSSEEEEEETTT-BE
T ss_pred CCcEeEEEE--cCEEEEEeCCCCeEEEEeCCCCeE
Confidence 245667776 666666666666777777777543
No 404
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=96.55 E-value=0.25 Score=45.17 Aligned_cols=153 Identities=12% Similarity=0.071 Sum_probs=91.8
Q ss_pred ccEEEEecCCcEEEEEecCCceeEE----EeeeccC-------------CcccceeEEEeeecCCCccEEEEeecCCeEE
Q 017553 49 FNVFATVGGNRVTVYQCLEGGVIAA----LQSYVDE-------------DKEESFYTVSWACNVDGIPFLVAGGINGIIR 111 (369)
Q Consensus 49 ~~~la~~~~~~v~iw~~~~~~~~~~----~~~~~~~-------------~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~ 111 (369)
.+++..+..+.|.||++..-..... +.....+ .....|+-+....-- +..+|+.+..||.|.
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg-~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLG-GEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccC-CeeEEEEEecCCeEE
Confidence 4677778888899999764333211 0000000 022334444333222 334899999999999
Q ss_pred EEEcCCc--------------------cccceeeccccceEEEEec--CCCCceEEEEeCCCcEEEEEccCCcEEEEeec
Q 017553 112 VIDVSNE--------------------KLHKSFVGHGDSINEIRTQ--PLKPSLVVSASKDESVRLWNVQTGICILIFAG 169 (369)
Q Consensus 112 vwd~~~~--------------------~~~~~~~~~~~~v~~~~~~--~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 169 (369)
+|.+++- ++...+. -...++.++++ . ..++||+++....|.||-......-.....
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~-~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~ 205 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYK-KSRLIAVSSNSQEVTVFAFALVDERFYHVP 205 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecC-cceEEEEecCCceEEEEEEecccccccccc
Confidence 9976321 0111122 34578999998 6 678888888888888886654211111100
Q ss_pred cCCCCCcEEEEEecCCC----c-eEEEEEeeCCcEEEEEc
Q 017553 170 AGGHRNEVLSVDFHPSD----I-YRIASCGMDNTVKIWSM 204 (369)
Q Consensus 170 ~~~~~~~v~~~~~~~~~----~-~~l~~~~~d~~v~i~d~ 204 (369)
...|...|.+++|.+++ + ..+++++-.|.+.+|++
T Consensus 206 s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 206 SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 11356678899997633 2 27788889999999888
No 405
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.49 E-value=0.52 Score=41.17 Aligned_cols=246 Identities=12% Similarity=0.094 Sum_probs=114.9
Q ss_pred EeeecCCCccEEEEeecCC----eEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCC-----------CcEE
Q 017553 90 SWACNVDGIPFLVAGGING----IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD-----------ESVR 154 (369)
Q Consensus 90 ~~~~~~~g~~~l~~~~~dg----~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----------g~i~ 154 (369)
.+.++|+|+.++++-+..| .|+++|+.+++.+...-.. .....+.|.+ +++.|+....+ ..|+
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~-d~~~~~y~~~~~~~~~~~~~~~~~v~ 205 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSD-DGKGFFYTRFDEDQRTSDSGYPRQVY 205 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECT-TSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeC-CCCEEEEEEeCcccccccCCCCcEEE
Confidence 6777899994444444444 4999999999765432111 1223499999 55554444322 2377
Q ss_pred EEEccCCcE--EEEeeccCCCCCc-EEEEEecCCCceEEEEEeeC-C---cEEEEEccCceeeeeeeeeccCCCCCCCCc
Q 017553 155 LWNVQTGIC--ILIFAGAGGHRNE-VLSVDFHPSDIYRIASCGMD-N---TVKIWSMKEFWTYVEKSFTWTDLPSKFPTK 227 (369)
Q Consensus 155 vwd~~~~~~--~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~d-~---~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 227 (369)
.|.+.+... ...+.. ..... ...+..++ ++++++..... . .+.+.|+.....
T Consensus 206 ~~~~gt~~~~d~lvfe~--~~~~~~~~~~~~s~-d~~~l~i~~~~~~~~s~v~~~d~~~~~~------------------ 264 (414)
T PF02897_consen 206 RHKLGTPQSEDELVFEE--PDEPFWFVSVSRSK-DGRYLFISSSSGTSESEVYLLDLDDGGS------------------ 264 (414)
T ss_dssp EEETTS-GGG-EEEEC---TTCTTSEEEEEE-T-TSSEEEEEEESSSSEEEEEEEECCCTTT------------------
T ss_pred EEECCCChHhCeeEEee--cCCCcEEEEEEecC-cccEEEEEEEccccCCeEEEEeccccCC------------------
Confidence 888776543 233331 12222 66788888 66665544332 2 366667665200
Q ss_pred eeecceeeeccCCCceeeeeeeCcEEEEeec----CCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCc
Q 017553 228 YVQFPVFIASVHSNYVDCNRWLGDFILSKSV----DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHY 303 (369)
Q Consensus 228 ~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 303 (369)
....+........+....+...++.+..-+. .+.|...++...... .....+..+...+.-..+...+.
T Consensus 265 ~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~------~~~~~l~~~~~~~~l~~~~~~~~- 337 (414)
T PF02897_consen 265 PDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPA------EWWTVLIPEDEDVSLEDVSLFKD- 337 (414)
T ss_dssp SS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGG------GEEEEEE--SSSEEEEEEEEETT-
T ss_pred CcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccc------cceeEEcCCCCceeEEEEEEECC-
Confidence 0001111112222222333333543333222 345666666655310 01112333333222333344443
Q ss_pred cEEEEecCCC--eEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEE-Ee-e--cCCeEEEEecCC
Q 017553 304 NAAAIGNREG--KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTIL-SC-C--EDGAIWRWDAIP 368 (369)
Q Consensus 304 ~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~-~--~dg~i~vw~~~~ 368 (369)
.+++....++ .|+++++..+ .....+.... .+.|..+...+++..+. +- | .-+.++.||+.+
T Consensus 338 ~Lvl~~~~~~~~~l~v~~~~~~--~~~~~~~~p~-~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t 405 (414)
T PF02897_consen 338 YLVLSYRENGSSRLRVYDLDDG--KESREIPLPE-AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLAT 405 (414)
T ss_dssp EEEEEEEETTEEEEEEEETT-T--EEEEEEESSS-SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTT
T ss_pred EEEEEEEECCccEEEEEECCCC--cEEeeecCCc-ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence 2445444444 5888888833 2333333222 24566666666655332 22 2 234577777654
No 406
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.46 E-value=0.063 Score=50.56 Aligned_cols=154 Identities=11% Similarity=0.007 Sum_probs=89.2
Q ss_pred cEEEEEecCCCceEEEE--EeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee---C
Q 017553 176 EVLSVDFHPSDIYRIAS--CGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---G 250 (369)
Q Consensus 176 ~v~~~~~~~~~~~~l~~--~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~ 250 (369)
++..+...+ +....++ .+.+-.|..||++........... + ...............++.|+ .
T Consensus 102 pi~~~v~~~-D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~----p--------l~~s~ts~ek~vf~~~~~wnP~vp 168 (1405)
T KOG3630|consen 102 PIVIFVCFH-DATDSVVVSTSNGEAVYSFDLEEFSESRYETTV----P--------LKNSATSFEKPVFQLKNVWNPLVP 168 (1405)
T ss_pred cceEEEecc-CCceEEEEEecCCceEEEEehHhhhhhhhhhcc----c--------cccccchhccccccccccccCCcc
Confidence 444555555 5433333 333447999999984332211100 0 00011112233445566776 4
Q ss_pred cEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEE
Q 017553 251 DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR 330 (369)
Q Consensus 251 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 330 (369)
...+++..|+.|++..+..... .+..++ .....++++|+|.|+ .++.|...|++.-|...-.....+..
T Consensus 169 ~n~av~l~dlsl~V~~~~~~~~--------~v~s~p-~t~~~Tav~WSprGK--Ql~iG~nnGt~vQy~P~leik~~ip~ 237 (1405)
T KOG3630|consen 169 LNSAVDLSDLSLRVKSTKQLAQ--------NVTSFP-VTNSQTAVLWSPRGK--QLFIGRNNGTEVQYEPSLEIKSEIPE 237 (1405)
T ss_pred chhhhhccccchhhhhhhhhhh--------hhcccC-cccceeeEEeccccc--eeeEecCCCeEEEeecccceeecccC
Confidence 4677778899999888765432 122222 235678999999997 89999999999998765431111111
Q ss_pred eecCCCccceEEEEecCCCCEEEE
Q 017553 331 LSHAQSKSPIRQTAMSYDGSTILS 354 (369)
Q Consensus 331 ~~~~~~~~~v~~~~~s~~~~~l~s 354 (369)
.+. .....|.+|+|-....++++
T Consensus 238 Pp~-~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 238 PPV-EENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred CCc-CCCcceeEEEEecceeEEEE
Confidence 111 12478999999877766664
No 407
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.41 E-value=0.28 Score=43.17 Aligned_cols=122 Identities=9% Similarity=0.079 Sum_probs=70.0
Q ss_pred CCceeeeeee-----Cc-EEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCC-CCCeeEEEEeecCCccEEEEecCC
Q 017553 240 SNYVDCNRWL-----GD-FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP-ECDIWFIKFSCDFHYNAAAIGNRE 312 (369)
Q Consensus 240 ~~~v~~~~~~-----~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~~~~~~l~~~~~d 312 (369)
-..|..+.|. +. .+++......|.+|.+................++... .---..+.|+|... .|++-+..
T Consensus 56 FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~--iL~VLT~~ 133 (671)
T PF15390_consen 56 FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKA--ILTVLTAR 133 (671)
T ss_pred cceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCc--eEEEEecC
Confidence 3457777775 11 4555567788999998633221111111111111110 00123467999886 66665555
Q ss_pred CeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecC-CeEEEEec
Q 017553 313 GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCED-GAIWRWDA 366 (369)
Q Consensus 313 g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-g~i~vw~~ 366 (369)
..-.++++..........+. ..+.|.|.+|.+||+.|+++-.. =.-+|||-
T Consensus 134 dvSV~~sV~~d~srVkaDi~---~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 134 DVSVLPSVHCDSSRVKADIK---TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred ceeEeeeeeeCCceEEEecc---CCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 55567777765444444443 33789999999999988766433 24688884
No 408
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=96.39 E-value=0.03 Score=47.17 Aligned_cols=245 Identities=15% Similarity=0.147 Sum_probs=130.4
Q ss_pred EEeeecCCCccEEEEeecCCeEEEEEcCCcc----ccceeeccccce-EEE----EecCCCCceEEEEeCCCcEEEEEcc
Q 017553 89 VSWACNVDGIPFLVAGGINGIIRVIDVSNEK----LHKSFVGHGDSI-NEI----RTQPLKPSLVVSASKDESVRLWNVQ 159 (369)
Q Consensus 89 ~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~v-~~~----~~~~~~~~~l~s~~~dg~i~vwd~~ 159 (369)
+.|+-.|.|++.++.|..||.+.+....-.. +-..+.....++ ... .-+| ...+.+....+....++|..
T Consensus 118 v~wa~~~~gqp~~alglsngqv~v~qp~~s~t~p~pg~~Fp~g~~p~aLd~qgr~leh~-~~~lalA~~~~~qf~~~~~t 196 (733)
T COG4590 118 VLWAQTPPGQPWFALGLSNGQVAVVQPQLSHTMPTPGREFPPGLEPLALDEQGRLLEHP-LQQLALALTAEAQFATYDNT 196 (733)
T ss_pred cccccCCCCCceEEEeccCCeEEEEeccccccCCCCCccCCCCCCccccCcccCcccch-HHHhhhccchhhHHHHhhhh
Confidence 6677778899899999999999998642110 111111100000 000 0111 11223333333333333332
Q ss_pred C------------CcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCc
Q 017553 160 T------------GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTK 227 (369)
Q Consensus 160 ~------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 227 (369)
. ++.+..+. .....|..+-..| +++.+..-+. .++.++++.+.....++..+....
T Consensus 197 ~~~~~L~g~~t~q~e~i~~L~---~~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg------- 264 (733)
T COG4590 197 QQIQILRGDRTTQQEIIRLLS---VPFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPG------- 264 (733)
T ss_pred hhhhhhhcccCchhhhhhhcC---CCccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCCC-------
Confidence 1 12222232 3556777888899 7777776654 688899888743222211110000
Q ss_pred eeecceeeeccCCCcee-eee-ee-CcEEEEeecCCeEEEe-cCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCc
Q 017553 228 YVQFPVFIASVHSNYVD-CNR-WL-GDFILSKSVDNEIVLW-EPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHY 303 (369)
Q Consensus 228 ~~~~~~~~~~~~~~~v~-~~~-~~-~~~l~~~~~d~~i~i~-d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 303 (369)
.....|+ .+. .. |..+++++.||.|.-| |.+.... + +...++.++.....+..+ .|+.+.
T Consensus 265 ----------~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~-p---~l~h~R~f~l~pa~~~~l--~pe~~r 328 (733)
T COG4590 265 ----------DSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQ-P---HLNHIRNFKLAPAEVQFL--LPETNR 328 (733)
T ss_pred ----------chHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecCCC-C---cceeeeccccCcccceee--cccccc
Confidence 0001111 111 11 6678888999998876 5544332 1 222334443333333333 344443
Q ss_pred cEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 304 NAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 304 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
.-+++-+..|.+.++.....+........ ..+.-+++||++.+|++- ..|.++++.+++
T Consensus 329 kgF~~l~~~G~L~~f~st~~~~lL~~~~~-----~~~~~~~~Sp~~~~Ll~e-~~gki~~~~l~N 387 (733)
T COG4590 329 KGFYSLYRNGTLQSFYSTSEKLLLFERAY-----QAPQLVAMSPNQAYLLSE-DQGKIRLAQLEN 387 (733)
T ss_pred ceEEEEcCCCceeeeecccCcceehhhhh-----cCcceeeeCcccchheee-cCCceEEEEecC
Confidence 46777888899988876665433333322 356678999999999865 456788887754
No 409
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.29 E-value=0.42 Score=38.01 Aligned_cols=157 Identities=14% Similarity=0.091 Sum_probs=87.0
Q ss_pred EEeeccCCCccEEEEecCC-----c-EEEEEecCC-ceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeec------
Q 017553 40 VFNFIDSRYFNVFATVGGN-----R-VTVYQCLEG-GVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI------ 106 (369)
Q Consensus 40 ~~s~~~~~~~~~la~~~~~-----~-v~iw~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~------ 106 (369)
.||| +|.+|...-+| + |-|||...+ ..+.++..+. -.-..+.|. +||+ .++.+..
T Consensus 120 vfs~----dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~G-----iGpHev~lm--~DGr-tlvvanGGIethp 187 (366)
T COG3490 120 VFSP----DGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHG-----IGPHEVTLM--ADGR-TLVVANGGIETHP 187 (366)
T ss_pred ccCC----CCcEEEeecCCCCCCCceEEEEecccccceecccccCC-----cCcceeEEe--cCCc-EEEEeCCceeccc
Confidence 4677 68888876543 2 889997643 2344455433 333347777 9999 5555431
Q ss_pred ------------CCeEEEEEcCCccccce--ee--ccccceEEEEecCCCCceEEEEeCCCc-----EEEEEccCCcEEE
Q 017553 107 ------------NGIIRVIDVSNEKLHKS--FV--GHGDSINEIRTQPLKPSLVVSASKDES-----VRLWNVQTGICIL 165 (369)
Q Consensus 107 ------------dg~i~vwd~~~~~~~~~--~~--~~~~~v~~~~~~~~~~~~l~s~~~dg~-----i~vwd~~~~~~~~ 165 (369)
.-.+.+.|..+|+++.+ +. -+.-.|..++..+ ++..++.+-..|. -.+=-...++.+.
T Consensus 188 dfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~-dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~ 266 (366)
T COG3490 188 DFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGR-DGTVWFGCQYRGPRNDLPPLVGHFRKGEPLE 266 (366)
T ss_pred ccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCC-CCcEEEEEEeeCCCccCCcceeeccCCCcCc
Confidence 11233444445544332 22 2345677888877 6666655533221 1111222344444
Q ss_pred EeeccC----CCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCcee
Q 017553 166 IFAGAG----GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWT 209 (369)
Q Consensus 166 ~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~ 209 (369)
.+...+ .....|-+++.+.+++...+|+-..+...+||..++..
T Consensus 267 ~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~v 314 (366)
T COG3490 267 FLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAV 314 (366)
T ss_pred ccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcE
Confidence 333211 12345778888865666666666667788999999643
No 410
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=96.28 E-value=0.028 Score=30.23 Aligned_cols=33 Identities=12% Similarity=0.202 Sum_probs=27.4
Q ss_pred cceEEEEecCCCC--ceEEEEeCCCcEEEEEccCC
Q 017553 129 DSINEIRTQPLKP--SLVVSASKDESVRLWNVQTG 161 (369)
Q Consensus 129 ~~v~~~~~~~~~~--~~l~s~~~dg~i~vwd~~~~ 161 (369)
++|.++.|+|... .+|+.+-.-|.|.++|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4689999998555 68888888899999999853
No 411
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.26 E-value=0.66 Score=40.00 Aligned_cols=163 Identities=9% Similarity=0.036 Sum_probs=92.6
Q ss_pred EEEEEeecc--CCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeee-cC-CCccEEEEeecCCeEE
Q 017553 37 YAVVFNFID--SRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWAC-NV-DGIPFLVAGGINGIIR 111 (369)
Q Consensus 37 ~~~~~s~~~--~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~g~~~l~~~~~dg~i~ 111 (369)
.|++..+.+ +...+.+++|+-.+ ++||+...++.... .......-+.+|..+..-. .+ .....||+ -.-..+.
T Consensus 23 ~~l~v~~~~~~~~~~d~IivGS~~G~LrIy~P~~~~~~~~-~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~ 100 (418)
T PF14727_consen 23 GSLCVGNLDNSPSGSDKIIVGSYSGILRIYDPSGNEFQPE-DLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLS 100 (418)
T ss_pred ceEEEEcccCCCCCccEEEEeccccEEEEEccCCCCCCCc-cEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEE
Confidence 345444432 12457899999888 99999865442111 1111124567787777652 12 12214444 4456788
Q ss_pred EEEcCCc--c-------ccceeeccc--cceEEEEecCC----CCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCc
Q 017553 112 VIDVSNE--K-------LHKSFVGHG--DSINEIRTQPL----KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNE 176 (369)
Q Consensus 112 vwd~~~~--~-------~~~~~~~~~--~~v~~~~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 176 (369)
+|.+... . .+..+..|. .....++.-|. +..+|+.-+.||.+.+++-+.-...+.+. .---
T Consensus 101 vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp----~~ll 176 (418)
T PF14727_consen 101 VYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLP----DFLL 176 (418)
T ss_pred EEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcC----CCCC
Confidence 8887321 1 122222332 22233333221 24688899999999999976544333333 2222
Q ss_pred EEEEEecCCCceEEEEEeeCCcEEEEEccC
Q 017553 177 VLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206 (369)
Q Consensus 177 v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~ 206 (369)
.-.+.|.+ ....|++++.+..+..|....
T Consensus 177 PgPl~Y~~-~tDsfvt~sss~~l~~Yky~~ 205 (418)
T PF14727_consen 177 PGPLCYCP-RTDSFVTASSSWTLECYKYQD 205 (418)
T ss_pred CcCeEEee-cCCEEEEecCceeEEEecHHH
Confidence 33567777 667799999888999998765
No 412
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.14 E-value=0.65 Score=42.11 Aligned_cols=107 Identities=10% Similarity=0.029 Sum_probs=68.7
Q ss_pred CCCccEEEEeecCCeEEEEEcCCccccceee-ccccceEEEEecCC-CCceEEEEeCCCcEEEEEcc---------CCcE
Q 017553 95 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFV-GHGDSINEIRTQPL-KPSLVVSASKDESVRLWNVQ---------TGIC 163 (369)
Q Consensus 95 ~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~-~~~~l~s~~~dg~i~vwd~~---------~~~~ 163 (369)
.-++ ..++-+....+.|||...+.....-. ...+.|.++.|... +++.+++.|....|.++.-. +-..
T Consensus 39 s~~k-~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~ 117 (631)
T PF12234_consen 39 SIKK-IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAP 117 (631)
T ss_pred ccCc-EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccce
Confidence 3444 44444455679999998776433222 34688999998631 67788888888999998542 1123
Q ss_pred EEEeeccCCCC-CcEEEEEecCCCceEEEEEeeCCcEEEEEccC
Q 017553 164 ILIFAGAGGHR-NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206 (369)
Q Consensus 164 ~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~ 206 (369)
++.+... .|+ .+|.+..|.+ +|.+++.+ ++.+.++|-.-
T Consensus 118 i~~i~i~-~~T~h~Igds~Wl~-~G~LvV~s--GNqlfv~dk~~ 157 (631)
T PF12234_consen 118 IRKIDIS-SHTPHPIGDSIWLK-DGTLVVGS--GNQLFVFDKWL 157 (631)
T ss_pred eEEEEee-cCCCCCccceeEec-CCeEEEEe--CCEEEEECCCc
Confidence 3433322 343 6899999998 77655544 35788887543
No 413
>PRK13684 Ycf48-like protein; Provisional
Probab=96.10 E-value=0.71 Score=38.86 Aligned_cols=154 Identities=8% Similarity=-0.011 Sum_probs=84.7
Q ss_pred CcCeEEEEEeeccCCCccEEEEecCCcEE-EEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEE
Q 017553 33 KRPLYAVVFNFIDSRYFNVFATVGGNRVT-VYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIR 111 (369)
Q Consensus 33 ~~~v~~~~~s~~~~~~~~~la~~~~~~v~-iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~ 111 (369)
...++++.+.| ++.+++++..+.+. .++ ..++....... .....++.+.+. ++++ .+++| ..|.++
T Consensus 172 ~g~~~~i~~~~----~g~~v~~g~~G~i~~s~~-~gg~tW~~~~~----~~~~~l~~i~~~--~~g~-~~~vg-~~G~~~ 238 (334)
T PRK13684 172 AGVVRNLRRSP----DGKYVAVSSRGNFYSTWE-PGQTAWTPHQR----NSSRRLQSMGFQ--PDGN-LWMLA-RGGQIR 238 (334)
T ss_pred cceEEEEEECC----CCeEEEEeCCceEEEEcC-CCCCeEEEeeC----CCcccceeeeEc--CCCC-EEEEe-cCCEEE
Confidence 45688888888 46666666655432 222 22233333332 345677778777 8887 55554 567765
Q ss_pred EEEcCCccccceeec----cccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCc
Q 017553 112 VIDVSNEKLHKSFVG----HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDI 187 (369)
Q Consensus 112 vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 187 (369)
+=..+.+..-..... ....+.++.+.| ++.. +.++.+|.+. .....++.-........-....+.+.|.. ++
T Consensus 239 ~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~-~~~~-~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~-~~ 314 (334)
T PRK13684 239 FNDPDDLESWSKPIIPEITNGYGYLDLAYRT-PGEI-WAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLD-PE 314 (334)
T ss_pred EccCCCCCccccccCCccccccceeeEEEcC-CCCE-EEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeC-CC
Confidence 433344433222111 123578889988 5554 4455667665 34444554444321112234577888874 44
Q ss_pred eEEEEEeeCCcEEEEEc
Q 017553 188 YRIASCGMDNTVKIWSM 204 (369)
Q Consensus 188 ~~l~~~~~d~~v~i~d~ 204 (369)
.. +..+..|.|.-|+-
T Consensus 315 ~~-~~~G~~G~il~~~~ 330 (334)
T PRK13684 315 KG-FVLGQRGVLLRYVG 330 (334)
T ss_pred ce-EEECCCceEEEecC
Confidence 54 44566788877653
No 414
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.08 E-value=0.0025 Score=53.77 Aligned_cols=144 Identities=19% Similarity=0.222 Sum_probs=95.0
Q ss_pred EEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEc
Q 017553 37 YAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDV 115 (369)
Q Consensus 37 ~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~ 115 (369)
-...|-|. +++ ++.++.+. +..|| +.++...... ..+....++|. .+|...++.+-..+.+.+||+
T Consensus 38 i~~~w~~e---~~n-lavaca~tiv~~YD-~agq~~le~n------~tg~aldm~wD--kegdvlavlAek~~piylwd~ 104 (615)
T KOG2247|consen 38 IIHRWRPE---GHN-LAVACANTIVIYYD-KAGQVILELN------PTGKALDMAWD--KEGDVLAVLAEKTGPIYLWDV 104 (615)
T ss_pred ceeeEecC---CCc-eehhhhhhHHHhhh-hhcceecccC------CchhHhhhhhc--cccchhhhhhhcCCCeeechh
Confidence 34456663 345 66666666 88999 4554443332 23444557777 577756777778899999998
Q ss_pred CCccccce-ee-ccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEE
Q 017553 116 SNEKLHKS-FV-GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASC 193 (369)
Q Consensus 116 ~~~~~~~~-~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 193 (369)
.+...-+. +. .|... -+.|++ ....++.+...|.+.+++..+.+.+.... .|...+.++++.+ .+ +.+.+
T Consensus 105 n~eytqqLE~gg~~s~s--ll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~G---kh~RRgtq~av~l-Ed-~vil~ 176 (615)
T KOG2247|consen 105 NSEYTQQLESGGTSSKS--LLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMG---KHQRRGTQIAVTL-ED-YVILC 176 (615)
T ss_pred hhhhHHHHhccCcchHH--HHhhcc-CCccccccccccceEEEeccchhhhhhhc---ccccceeEEEecc-cc-eeeec
Confidence 76532211 11 13333 278998 77888888899999999988776665553 4999999999998 44 45555
Q ss_pred eeCCcEEE
Q 017553 194 GMDNTVKI 201 (369)
Q Consensus 194 ~~d~~v~i 201 (369)
+.|..+.+
T Consensus 177 dcd~~L~v 184 (615)
T KOG2247|consen 177 DCDNTLSV 184 (615)
T ss_pred CcHHHHHH
Confidence 55655444
No 415
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.84 E-value=1.2 Score=39.42 Aligned_cols=120 Identities=15% Similarity=0.108 Sum_probs=66.8
Q ss_pred cceeEEEeeec-CCCccEEEEeecCCeEEEEEcCC-----ccccceeec-ccc----ceEEEEecCCCCceEEEEeCCCc
Q 017553 84 ESFYTVSWACN-VDGIPFLVAGGINGIIRVIDVSN-----EKLHKSFVG-HGD----SINEIRTQPLKPSLVVSASKDES 152 (369)
Q Consensus 84 ~~v~~~~~~~~-~~g~~~l~~~~~dg~i~vwd~~~-----~~~~~~~~~-~~~----~v~~~~~~~~~~~~l~s~~~dg~ 152 (369)
+-|+.++|.+. ..+.+.|++......|.||.+.- .+.+..... ... --..+.|+| ...+|+.-.....
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~~dv 135 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTARDV 135 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEecCce
Confidence 35777999832 12233566666677899999752 222211111 111 124577999 6666665544444
Q ss_pred EEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccC
Q 017553 153 VRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206 (369)
Q Consensus 153 i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~ 206 (369)
-.+.+++.......... ...+.|.|.+|.+++.+++++.+..=.-++||-..
T Consensus 136 SV~~sV~~d~srVkaDi--~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 136 SVLPSVHCDSSRVKADI--KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred eEeeeeeeCCceEEEec--cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 44666654332222211 36788999999994444444444444567787654
No 416
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.76 E-value=0.67 Score=35.80 Aligned_cols=172 Identities=12% Similarity=0.043 Sum_probs=94.9
Q ss_pred cEEEEecCCc--EEEEEec--CCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeec----------CCeEEEEEc
Q 017553 50 NVFATVGGNR--VTVYQCL--EGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI----------NGIIRVIDV 115 (369)
Q Consensus 50 ~~la~~~~~~--v~iw~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~----------dg~i~vwd~ 115 (369)
+.++++.+.+ |.=||.. ......++........+...+.-... |+|+ + ..|.. .|.++.|-.
T Consensus 71 q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvd--P~Gr-y-y~GtMad~~~~le~~~g~Ly~~~~ 146 (310)
T KOG4499|consen 71 QEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVD--PDGR-Y-YGGTMADFGDDLEPIGGELYSWLA 146 (310)
T ss_pred ceEEEeecceEEEEEcccccceeeeeeeccccCchHHhcccccCccC--CCCc-e-eeeeeccccccccccccEEEEecc
Confidence 3444444444 6667732 22233332222221223344444445 9998 5 44432 244555543
Q ss_pred CCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEE--ccCCc-----EEEEeeccCCCCC-cEEEEEecCCCc
Q 017553 116 SNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN--VQTGI-----CILIFAGAGGHRN-EVLSVDFHPSDI 187 (369)
Q Consensus 116 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~-----~~~~~~~~~~~~~-~v~~~~~~~~~~ 187 (369)
+..+..+...-+.-+.++|+.+...+.++-+.+-+|.-|| ..+|. .+..++....... ..-.++... ++
T Consensus 147 --~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG 223 (310)
T KOG4499|consen 147 --GHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EG 223 (310)
T ss_pred --CCCceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CC
Confidence 2223333333344567899874445556667778887788 55553 3333332111111 123455565 78
Q ss_pred eEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeeeCc
Q 017553 188 YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGD 251 (369)
Q Consensus 188 ~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 251 (369)
+++++.-..++|...|..+++ .+..+......++|++|-|.
T Consensus 224 ~L~Va~~ng~~V~~~dp~tGK-----------------------~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 224 NLYVATFNGGTVQKVDPTTGK-----------------------ILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred cEEEEEecCcEEEEECCCCCc-----------------------EEEEEEcCCCceEEEEecCC
Confidence 888888888999999999954 44455556888999999754
No 417
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.75 E-value=0.051 Score=29.21 Aligned_cols=31 Identities=13% Similarity=0.109 Sum_probs=26.1
Q ss_pred cceEEEEecCCC---CEEEEeecCCeEEEEecCC
Q 017553 338 SPIRQTAMSYDG---STILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 338 ~~v~~~~~s~~~---~~l~s~~~dg~i~vw~~~~ 368 (369)
+.|.++.|+|+. .+|+.+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 368899999854 5899998999999999874
No 418
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.71 E-value=0.17 Score=47.82 Aligned_cols=112 Identities=14% Similarity=0.023 Sum_probs=73.8
Q ss_pred EEeeecCCCccEEEE-e-ecCCeEEEEEcCCcccc-----ceee------ccccceEEEEecCCCCceEEEEeCCCcEEE
Q 017553 89 VSWACNVDGIPFLVA-G-GINGIIRVIDVSNEKLH-----KSFV------GHGDSINEIRTQPLKPSLVVSASKDESVRL 155 (369)
Q Consensus 89 ~~~~~~~~g~~~l~~-~-~~dg~i~vwd~~~~~~~-----~~~~------~~~~~v~~~~~~~~~~~~l~s~~~dg~i~v 155 (369)
+.+...+|+. ..++ - +.+-.|..||+++-..- .-+. ....-..++.|+|.-....+....|+.|++
T Consensus 104 ~~~v~~~D~t-~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V 182 (1405)
T KOG3630|consen 104 VIFVCFHDAT-DSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRV 182 (1405)
T ss_pred eEEEeccCCc-eEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhh
Confidence 4444447766 3333 2 33346889998654221 1111 123356788899965666778888999999
Q ss_pred EEccCCcE-EEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccC
Q 017553 156 WNVQTGIC-ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206 (369)
Q Consensus 156 wd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~ 206 (369)
..+..-.. +..+ ......++++|+| .+..++.|-..|++.-|...-
T Consensus 183 ~~~~~~~~~v~s~----p~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~l 229 (1405)
T KOG3630|consen 183 KSTKQLAQNVTSF----PVTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPSL 229 (1405)
T ss_pred hhhhhhhhhhccc----CcccceeeEEecc-ccceeeEecCCCeEEEeeccc
Confidence 87653322 2222 2566789999999 889999999999999887655
No 419
>PLN02153 epithiospecifier protein
Probab=95.53 E-value=1.3 Score=37.53 Aligned_cols=64 Identities=8% Similarity=0.128 Sum_probs=33.5
Q ss_pred CCceEEEEeCC-----CcEEEEEccCCcEEEEeeccC----CCCCcEEEEEecCCCceEEEEEeeCC-----------cE
Q 017553 140 KPSLVVSASKD-----ESVRLWNVQTGICILIFAGAG----GHRNEVLSVDFHPSDIYRIASCGMDN-----------TV 199 (369)
Q Consensus 140 ~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~~d~-----------~v 199 (369)
++.+++.|+.+ ..+.+||+.+.+-.. +.... .....-.+++.. ++.+++.|+.+. .+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~-~~~~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~v 161 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTF-LTKLDEEGGPEARTFHSMASD--ENHVYVFGGVSKGGLMKTPERFRTI 161 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEE-eccCCCCCCCCCceeeEEEEE--CCEEEEECCccCCCccCCCcccceE
Confidence 45677777753 357788987765432 21110 001111223333 567777777542 36
Q ss_pred EEEEccC
Q 017553 200 KIWSMKE 206 (369)
Q Consensus 200 ~i~d~~~ 206 (369)
.+||..+
T Consensus 162 ~~yd~~~ 168 (341)
T PLN02153 162 EAYNIAD 168 (341)
T ss_pred EEEECCC
Confidence 6677765
No 420
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.53 E-value=0.0021 Score=54.16 Aligned_cols=143 Identities=13% Similarity=0.152 Sum_probs=98.1
Q ss_pred CCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCC
Q 017553 95 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR 174 (369)
Q Consensus 95 ~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 174 (369)
+.+. -++.++.+-.+..|| +.++...... .++....++|..+....++.+-..+.+.+||+.+... ..+..-..|.
T Consensus 44 ~e~~-nlavaca~tiv~~YD-~agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-qqLE~gg~~s 119 (615)
T KOG2247|consen 44 PEGH-NLAVACANTIVIYYD-KAGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQLESGGTSS 119 (615)
T ss_pred cCCC-ceehhhhhhHHHhhh-hhcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-HHHhccCcch
Confidence 7777 477777788888998 4455444443 4556678888884444566677889999999976432 2222111233
Q ss_pred CcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee-CcEE
Q 017553 175 NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFI 253 (369)
Q Consensus 175 ~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l 253 (369)
... +.|++ +...++.+...|.+.+++... .........|...+.++++. .++.
T Consensus 120 ~sl--l~wsK-g~~el~ig~~~gn~viynhgt-----------------------sR~iiv~Gkh~RRgtq~av~lEd~v 173 (615)
T KOG2247|consen 120 KSL--LAWSK-GTPELVIGNNAGNIVIYNHGT-----------------------SRRIIVMGKHQRRGTQIAVTLEDYV 173 (615)
T ss_pred HHH--Hhhcc-CCccccccccccceEEEeccc-----------------------hhhhhhhcccccceeEEEeccccee
Confidence 333 78898 888888898999999999887 22333444488899999998 7788
Q ss_pred EEeecCCeEEEecC
Q 017553 254 LSKSVDNEIVLWEP 267 (369)
Q Consensus 254 ~~~~~d~~i~i~d~ 267 (369)
+.++.|..+.+-..
T Consensus 174 il~dcd~~L~v~~q 187 (615)
T KOG2247|consen 174 ILCDCDNTLSVTTQ 187 (615)
T ss_pred eecCcHHHHHHhhh
Confidence 88777766555443
No 421
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.48 E-value=0.15 Score=43.69 Aligned_cols=94 Identities=15% Similarity=0.175 Sum_probs=65.2
Q ss_pred cceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCC---
Q 017553 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD--- 96 (369)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--- 96 (369)
.+......|......+.+++.+| ++.+.|+...-+ |.++|+.++..++..+++.+.. +.|...++
T Consensus 295 ~~l~~r~~l~D~~R~~~~i~~sP----~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAq-------c~wi~~~~~~~ 363 (415)
T PF14655_consen 295 APLPMRFGLPDSKREGESICLSP----SGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQ-------CGWIEVPEEGD 363 (415)
T ss_pred cccceEEeeccCCceEEEEEECC----CCCEEEEEcCCCcEEEEECCCChhhhhhccCccce-------EEEEEeecccc
Confidence 45556666777788899999999 577777765444 9999999999888888765421 22221111
Q ss_pred ---------------CccEEEEeecCCeEEEEEcCCccccceee
Q 017553 97 ---------------GIPFLVAGGINGIIRVIDVSNEKLHKSFV 125 (369)
Q Consensus 97 ---------------g~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 125 (369)
...+++-+-.-|.|.||.+.++..+..+.
T Consensus 364 ~~~~~~~~~~~~~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 364 RDRSNSNSPKSSSRFALFLVIYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred cccccccccCCCCcceEEEEEEeccCCeEEEEecCCCCEEEEEE
Confidence 11134456678999999999888776665
No 422
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.48 E-value=2.3 Score=40.13 Aligned_cols=109 Identities=10% Similarity=0.004 Sum_probs=68.0
Q ss_pred EEEEeecCCeEEEEEcCCccccceeecccc--------ceEEEEecC---------------CCCceEEEEeCCCcEEEE
Q 017553 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGD--------SINEIRTQP---------------LKPSLVVSASKDESVRLW 156 (369)
Q Consensus 100 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~--------~v~~~~~~~---------------~~~~~l~s~~~dg~i~vw 156 (369)
.|+.++.++.|.-.|..+|+.+.++..... ....+.+.. .....++.++.|+.+.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 577778888999999999988776653211 012233321 023478888899999999
Q ss_pred EccCCcEEEEeeccCCCCCcEE-------------EEEecCC-CceEEEEEee----------CCcEEEEEccCceeeee
Q 017553 157 NVQTGICILIFAGAGGHRNEVL-------------SVDFHPS-DIYRIASCGM----------DNTVKIWSMKEFWTYVE 212 (369)
Q Consensus 157 d~~~~~~~~~~~~~~~~~~~v~-------------~~~~~~~-~~~~l~~~~~----------d~~v~i~d~~~~~~~~~ 212 (369)
|.++|+.+..+. ..+.|. .+.-.|- .+..++.|+. +|.|+-+|.++++..-.
T Consensus 276 DA~TGk~~W~fg----~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~ 351 (764)
T TIGR03074 276 DADTGKLCEDFG----NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA 351 (764)
T ss_pred ECCCCCEEEEec----CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence 999999998764 222221 0111110 1234555542 68899999999765443
No 423
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=95.44 E-value=1.1 Score=36.02 Aligned_cols=145 Identities=14% Similarity=0.223 Sum_probs=93.5
Q ss_pred CCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccC-CCceeeeeeeCc
Q 017553 173 HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH-SNYVDCNRWLGD 251 (369)
Q Consensus 173 ~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~ 251 (369)
-.+-+..+.++. ++...+..+.-+++.|+.++.. |...-... .+.-.++..+|+
T Consensus 85 ~~~l~~Dv~vse---~yvyvad~ssGL~IvDIS~P~s----------------------P~~~~~lnt~gyaygv~vsGn 139 (370)
T COG5276 85 ARDLFADVRVSE---EYVYVADWSSGLRIVDISTPDS----------------------PTLIGFLNTDGYAYGVYVSGN 139 (370)
T ss_pred hhhhhheeEecc---cEEEEEcCCCceEEEeccCCCC----------------------cceeccccCCceEEEEEecCC
Confidence 455667788863 4566666777899999998432 22111112 255566777799
Q ss_pred EEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCC-ceeEEE
Q 017553 252 FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP-PVLIAR 330 (369)
Q Consensus 252 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~ 330 (369)
+..++..|.-+.+.|+.+...+ ....++.......+.++.|-+ +...+..|+-+.+-|+.+.. ++++..
T Consensus 140 ~aYVadlddgfLivdvsdpssP------~lagrya~~~~d~~~v~ISGn----~AYvA~~d~GL~ivDVSnp~sPvli~~ 209 (370)
T COG5276 140 YAYVADLDDGFLIVDVSDPSSP------QLAGRYALPGGDTHDVAISGN----YAYVAWRDGGLTIVDVSNPHSPVLIGS 209 (370)
T ss_pred EEEEeeccCcEEEEECCCCCCc------eeeeeeccCCCCceeEEEecC----eEEEEEeCCCeEEEEccCCCCCeEEEE
Confidence 9999998888889999877532 233444444444456666644 56666788889999998754 333333
Q ss_pred eecCCCccceEEEEecCCCCEEEEe
Q 017553 331 LSHAQSKSPIRQTAMSYDGSTILSC 355 (369)
Q Consensus 331 ~~~~~~~~~v~~~~~s~~~~~l~s~ 355 (369)
.. ....+.++..+++-.+++..
T Consensus 210 ~n---~g~g~~sv~vsdnr~y~vvy 231 (370)
T COG5276 210 YN---TGPGTYSVSVSDNRAYLVVY 231 (370)
T ss_pred Ee---cCCceEEEEecCCeeEEEEc
Confidence 32 22368888888876666654
No 424
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.41 E-value=0.84 Score=34.60 Aligned_cols=131 Identities=11% Similarity=0.026 Sum_probs=75.2
Q ss_pred cccceeeeeecccCCcC--eEEEEEeeccCCCccEEEEecCCc---EEEEEecCCceeEEEeeeccCCcccceeEEEeee
Q 017553 19 KKREYRVTNKLQEGKRP--LYAVVFNFIDSRYFNVFATVGGNR---VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWAC 93 (369)
Q Consensus 19 ~~~~~~~~~~~~~h~~~--v~~~~~s~~~~~~~~~la~~~~~~---v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 93 (369)
+...+++.+++. |... -..+.+. +|.++.+.+.-+ |++||+.+++.+....--.+....+.+..+
T Consensus 30 ~~l~~evi~~yp-hDs~sfTQGL~~~-----~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~---- 99 (262)
T COG3823 30 KVLVYEVIRTYP-HDSTSFTQGLEYL-----DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL---- 99 (262)
T ss_pred cCcceEEEEecc-Cchhhhhcceeee-----CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeec----
Confidence 344445565553 3322 2234444 378888877543 999999988876654422112223333221
Q ss_pred cCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEE
Q 017553 94 NVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILI 166 (369)
Q Consensus 94 ~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 166 (369)
|..+....-.+|.-..+|.++-+.+..+. ..+.=+.++.. +..|+.+....+++.-|.++-....+
T Consensus 100 ---gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeGWgLt~d---~~~LimsdGsatL~frdP~tfa~~~~ 165 (262)
T COG3823 100 ---GDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEGWGLTSD---DKNLIMSDGSATLQFRDPKTFAELDT 165 (262)
T ss_pred ---cceEEEEEeccceeEEEChHHhhhhcccc-cCCcceeeecC---CcceEeeCCceEEEecCHHHhhhcce
Confidence 22134444567888899988888777765 34555666653 33455555556788878776544433
No 425
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.29 E-value=0.56 Score=39.95 Aligned_cols=123 Identities=11% Similarity=0.044 Sum_probs=75.5
Q ss_pred CCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeeeCc
Q 017553 172 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGD 251 (369)
Q Consensus 172 ~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 251 (369)
...++|.++.|++ +.+.+++--.+.+|.+++....+.. ..........+..|....|..+
T Consensus 64 ~d~G~I~SIkFSl-DnkilAVQR~~~~v~f~nf~~d~~~-------------------l~~~~~ck~k~~~IlGF~W~~s 123 (657)
T KOG2377|consen 64 DDKGEIKSIKFSL-DNKILAVQRTSKTVDFCNFIPDNSQ-------------------LEYTQECKTKNANILGFCWTSS 123 (657)
T ss_pred cCCCceeEEEecc-CcceEEEEecCceEEEEecCCCchh-------------------hHHHHHhccCcceeEEEEEecC
Confidence 3567999999999 8899999999999999998542111 1111222333445777788633
Q ss_pred -EEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCC
Q 017553 252 -FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 323 (369)
Q Consensus 252 -~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~ 323 (369)
-++... +.-+.+|.....+. .++..+.+...|....|+++..-.+|+++-..+.+.=+.++.+
T Consensus 124 ~e~A~i~-~~G~e~y~v~pekr--------slRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 124 TEIAFIT-DQGIEFYQVLPEKR--------SLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred eeEEEEe-cCCeEEEEEchhhh--------hhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 333333 34466666554432 4555566777888899999887333344434444544544443
No 426
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=95.27 E-value=1.2 Score=35.70 Aligned_cols=280 Identities=10% Similarity=0.037 Sum_probs=148.7
Q ss_pred CcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEE
Q 017553 33 KRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIR 111 (369)
Q Consensus 33 ~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~ 111 (369)
.+.+..+.++. ++...+..+. ++|.|+.+......+..+. ..+--+++. -.|+ ++.++..+.-+.
T Consensus 86 ~~l~~Dv~vse------~yvyvad~ssGL~IvDIS~P~sP~~~~~ln---t~gyaygv~----vsGn-~aYVadlddgfL 151 (370)
T COG5276 86 RDLFADVRVSE------EYVYVADWSSGLRIVDISTPDSPTLIGFLN---TDGYAYGVY----VSGN-YAYVADLDDGFL 151 (370)
T ss_pred hhhhheeEecc------cEEEEEcCCCceEEEeccCCCCcceecccc---CCceEEEEE----ecCC-EEEEeeccCcEE
Confidence 44566777775 5555555544 9999998877666555432 122333333 3476 777777566677
Q ss_pred EEEcCCcc---ccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCce
Q 017553 112 VIDVSNEK---LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY 188 (369)
Q Consensus 112 vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 188 (369)
+.|+.+.+ +..........-..++.+ +++-..+..|+-+.+-|+........+... .....+.++..++ +..
T Consensus 152 ivdvsdpssP~lagrya~~~~d~~~v~IS---Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~-n~g~g~~sv~vsd-nr~ 226 (370)
T COG5276 152 IVDVSDPSSPQLAGRYALPGGDTHDVAIS---GNYAYVAWRDGGLTIVDVSNPHSPVLIGSY-NTGPGTYSVSVSD-NRA 226 (370)
T ss_pred EEECCCCCCceeeeeeccCCCCceeEEEe---cCeEEEEEeCCCeEEEEccCCCCCeEEEEE-ecCCceEEEEecC-Cee
Confidence 88887653 233343334444566664 466777788999999999765433322210 1333677887775 444
Q ss_pred EEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeeeCcEEEEeecCCeEEEecCC
Q 017553 189 RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPK 268 (369)
Q Consensus 189 ~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~ 268 (369)
+++ -. +--+.+-|........... .........+..+..++++......+.-+.+-|+.
T Consensus 227 y~v-vy-~egvlivd~s~~ssp~~~g-------------------syet~~p~~~s~v~Vs~~~~Yvadga~gl~~idis 285 (370)
T COG5276 227 YLV-VY-DEGVLIVDVSGPSSPTVFG-------------------SYETSNPVSISTVPVSGEYAYVADGAKGLPIIDIS 285 (370)
T ss_pred EEE-Ec-ccceEEEecCCCCCceEee-------------------ccccCCcccccceecccceeeeeccccCceeEecc
Confidence 333 33 3346666766522100000 00011122233345558888887777778888877
Q ss_pred CCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCC
Q 017553 269 MKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYD 348 (369)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 348 (369)
+..... ....+......-..+..+ +. ++..+..+ ...+-|....+.. -... +....+.+...+-+
T Consensus 286 np~spf------l~ss~~t~g~~a~gi~ay--~~--y~yiadkn-~g~vV~~s~~s~m--~~~~--g~~ti~~s~~v~~~ 350 (370)
T COG5276 286 NPPSPF------LSSSLDTAGYQAAGIRAY--GN--YNYIADKN-TGAVVDASPPSMM--DKRP--GRPTIGQSCDVSVD 350 (370)
T ss_pred CCCCCc------hhccccCCCccccceEEe--cC--eeEeccCC-ceEEEeCCChhhc--cccc--CcceEeeecceEEE
Confidence 654211 111222211122222222 21 33333333 3444454443211 1111 22233444555556
Q ss_pred CCEEEEeecCCeEEEEecC
Q 017553 349 GSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 349 ~~~l~s~~~dg~i~vw~~~ 367 (369)
.+.+.+...++.+.||+..
T Consensus 351 ~q~~y~~d~~~gl~i~~~~ 369 (370)
T COG5276 351 TQIIYSTDYNGGLSIIEYL 369 (370)
T ss_pred eeEEEEeecCCCEEEEEec
Confidence 6788899999999999864
No 427
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.24 E-value=0.15 Score=39.68 Aligned_cols=81 Identities=11% Similarity=0.108 Sum_probs=52.5
Q ss_pred ceeeeeeeCcEEEEeecCCeEEEecCCCCCCCCCCCcc-ceeeecc----CCCCCeeEEEEeecCCccEEEEecCCCeEE
Q 017553 242 YVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTA-DILQKYP----VPECDIWFIKFSCDFHYNAAAIGNREGKIF 316 (369)
Q Consensus 242 ~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~----~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~ 316 (369)
.+..+...++++++.+.+|.+++||+.+.+........ ..+.... .....|..+.++.+|. -+++ -.+|..+
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~--PiV~-lsng~~y 90 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV--PIVT-LSNGDSY 90 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC--EEEE-EeCCCEE
Confidence 34445556889999999999999999998753322111 1111100 3456788888988875 2333 3457889
Q ss_pred EEEccCCCc
Q 017553 317 VWELQSSPP 325 (369)
Q Consensus 317 i~d~~~~~~ 325 (369)
.|+..-+..
T Consensus 91 ~y~~~L~~W 99 (219)
T PF07569_consen 91 SYSPDLGCW 99 (219)
T ss_pred Eecccccee
Confidence 999876643
No 428
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.11 E-value=2 Score=37.19 Aligned_cols=109 Identities=16% Similarity=0.254 Sum_probs=63.0
Q ss_pred CCCccEEEEeecCCeEEEEEcCCcccc--cee-e-ccccceEEEEec---CCCCceEEEEeCCCcEEEEEccC--Cc---
Q 017553 95 VDGIPFLVAGGINGIIRVIDVSNEKLH--KSF-V-GHGDSINEIRTQ---PLKPSLVVSASKDESVRLWNVQT--GI--- 162 (369)
Q Consensus 95 ~~g~~~l~~~~~dg~i~vwd~~~~~~~--~~~-~-~~~~~v~~~~~~---~~~~~~l~s~~~dg~i~vwd~~~--~~--- 162 (369)
+++...+++|+..|.++||+....... ..+ . .-..+|..+..- +......++.=.-..+.+|.+.. |.
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCccc
Confidence 444558999999999999998544311 111 1 134577777653 21233333335557788887732 11
Q ss_pred ----EEEEeeccCCCC--CcEEEEEecCC----CceEEEEEeeCCcEEEEEccC
Q 017553 163 ----CILIFAGAGGHR--NEVLSVDFHPS----DIYRIASCGMDNTVKIWSMKE 206 (369)
Q Consensus 163 ----~~~~~~~~~~~~--~~v~~~~~~~~----~~~~l~~~~~d~~v~i~d~~~ 206 (369)
.+..+. .|. .....+++-|- +..++++-+.||.+.+|+-+.
T Consensus 114 g~~~~L~~~y---eh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~ 164 (418)
T PF14727_consen 114 GNQYQLELIY---EHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQES 164 (418)
T ss_pred CcEEEEEEEE---EEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCc
Confidence 111111 232 23334444331 257888899999999999887
No 429
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.99 E-value=1.3 Score=34.34 Aligned_cols=98 Identities=14% Similarity=0.080 Sum_probs=52.7
Q ss_pred eeeeeee---CcEEEEeecCCeEEEec--CCCCCCCCCCCccceeeeccCCC-CCeeEEEEeecCCccEEEEecCCCeEE
Q 017553 243 VDCNRWL---GDFILSKSVDNEIVLWE--PKMKEQSPGEGTADILQKYPVPE-CDIWFIKFSCDFHYNAAAIGNREGKIF 316 (369)
Q Consensus 243 v~~~~~~---~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~s~~~~~~~l~~~~~dg~i~ 316 (369)
-..++|+ ..+.+.-+.+-.|.-|| ..++.......... ++..+..+ ...-.++...+| ++.++.-..++|.
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~d-lrk~~~~e~~~PDGm~ID~eG--~L~Va~~ng~~V~ 236 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFD-LRKSQPFESLEPDGMTIDTEG--NLYVATFNGGTVQ 236 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEE-eccCCCcCCCCCCcceEccCC--cEEEEEecCcEEE
Confidence 3456776 22445555666776677 55544321111111 11111111 111223444445 4677777889999
Q ss_pred EEEccCCCceeEEEeecCCCccceEEEEecC
Q 017553 317 VWELQSSPPVLIARLSHAQSKSPIRQTAMSY 347 (369)
Q Consensus 317 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 347 (369)
.+|..+++......++ ...|++++|--
T Consensus 237 ~~dp~tGK~L~eiklP----t~qitsccFgG 263 (310)
T KOG4499|consen 237 KVDPTTGKILLEIKLP----TPQITSCCFGG 263 (310)
T ss_pred EECCCCCcEEEEEEcC----CCceEEEEecC
Confidence 9999999644444443 35799999963
No 430
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.86 E-value=3.1 Score=38.15 Aligned_cols=88 Identities=11% Similarity=0.181 Sum_probs=52.8
Q ss_pred CCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeec-cCCCCCcEEEEEecCC
Q 017553 107 NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAG-AGGHRNEVLSVDFHPS 185 (369)
Q Consensus 107 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~ 185 (369)
--.|+||++ +|+++..+.-....+-.+.|+. ...|+....+|++++|++- |+.+..... .+.....|..+.+..
T Consensus 63 ~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~--~eeLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~- 137 (829)
T KOG2280|consen 63 RPYIRIFNI-SGQLLGRILWKHGELIGMGWSD--DEELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFH- 137 (829)
T ss_pred ceeEEEEec-cccchHHHHhcCCCeeeecccC--CceEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEec-
Confidence 346889985 5777666654455888999996 4567778999999999985 333333110 012233454455543
Q ss_pred CceEEEEEeeCCcEEE
Q 017553 186 DIYRIASCGMDNTVKI 201 (369)
Q Consensus 186 ~~~~l~~~~~d~~v~i 201 (369)
+|-.+++. +|.+.+
T Consensus 138 ~GVavlt~--~g~v~~ 151 (829)
T KOG2280|consen 138 NGVAVLTV--SGQVIL 151 (829)
T ss_pred CceEEEec--CCcEEE
Confidence 55444443 344433
No 431
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.85 E-value=3.5 Score=38.66 Aligned_cols=77 Identities=17% Similarity=0.224 Sum_probs=52.1
Q ss_pred cceEEEEecCCCCceEEEEeCCCcEEEEEccC----------CcEE---EEeec-----cCCCCCcEEEEEecCCC--ce
Q 017553 129 DSINEIRTQPLKPSLVVSASKDESVRLWNVQT----------GICI---LIFAG-----AGGHRNEVLSVDFHPSD--IY 188 (369)
Q Consensus 129 ~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~----------~~~~---~~~~~-----~~~~~~~v~~~~~~~~~--~~ 188 (369)
-.|..|.++| ++.+++..|..| |.|..+.. |+.. +.+.. ...+...|..+.|+|.. +.
T Consensus 85 f~v~~i~~n~-~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 85 FEVHQISLNP-TGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred eeEEEEEECC-CCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 3688999999 888888888755 44444421 1111 11110 01345678999999942 57
Q ss_pred EEEEEeeCCcEEEEEccCc
Q 017553 189 RIASCGMDNTVKIWSMKEF 207 (369)
Q Consensus 189 ~l~~~~~d~~v~i~d~~~~ 207 (369)
.|+.-..|+++|+||+...
T Consensus 163 ~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred eEEEEecCCEEEEEecCCC
Confidence 8888999999999999763
No 432
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.82 E-value=1.7 Score=34.95 Aligned_cols=148 Identities=17% Similarity=0.124 Sum_probs=82.0
Q ss_pred CeEEEEEeeccCCCccEEEEec--CCcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEE
Q 017553 35 PLYAVVFNFIDSRYFNVFATVG--GNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRV 112 (369)
Q Consensus 35 ~v~~~~~s~~~~~~~~~la~~~--~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~v 112 (369)
.+.+.++++ +++.+|... .++-.+|-...+.....+. ....+..-+|. +++. +.+....+...++
T Consensus 25 ~~~s~AvS~----dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~------~g~~l~~PS~d--~~g~-~W~v~~~~~~~~~ 91 (253)
T PF10647_consen 25 DVTSPAVSP----DGSRVAAVSEGDGGRSLYVGPAGGPVRPVL------TGGSLTRPSWD--PDGW-VWTVDDGSGGVRV 91 (253)
T ss_pred cccceEECC----CCCeEEEEEEcCCCCEEEEEcCCCcceeec------cCCcccccccc--CCCC-EEEEEcCCCceEE
Confidence 688999999 577776655 4544444434444333332 12244555666 8877 5555555666666
Q ss_pred EE-cCCcccc-ceee--ccccceEEEEecCCCCceEEEEe---CCCcEEEEEcc---CC--cEE-EEeeccCCCCCcEEE
Q 017553 113 ID-VSNEKLH-KSFV--GHGDSINEIRTQPLKPSLVVSAS---KDESVRLWNVQ---TG--ICI-LIFAGAGGHRNEVLS 179 (369)
Q Consensus 113 wd-~~~~~~~-~~~~--~~~~~v~~~~~~~~~~~~l~s~~---~dg~i~vwd~~---~~--~~~-~~~~~~~~~~~~v~~ 179 (369)
+. ..+++.. ..+. .-...|..+.++| ++..++... .++.|.+--+. .+ ..+ ..+.........+.+
T Consensus 92 ~~~~~~g~~~~~~v~~~~~~~~I~~l~vSp-DG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~ 170 (253)
T PF10647_consen 92 VRDSASGTGEPVEVDWPGLRGRITALRVSP-DGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTD 170 (253)
T ss_pred EEecCCCcceeEEecccccCCceEEEEECC-CCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCccee
Confidence 63 2333221 1111 1112899999999 777666544 35777776554 22 011 111111123567899
Q ss_pred EEecCCCceEEEEEeeCC
Q 017553 180 VDFHPSDIYRIASCGMDN 197 (369)
Q Consensus 180 ~~~~~~~~~~l~~~~~d~ 197 (369)
+.|.+ +..+++.+...+
T Consensus 171 v~W~~-~~~L~V~~~~~~ 187 (253)
T PF10647_consen 171 VAWSD-DSTLVVLGRSAG 187 (253)
T ss_pred eeecC-CCEEEEEeCCCC
Confidence 99998 666666555443
No 433
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.82 E-value=2.4 Score=39.70 Aligned_cols=78 Identities=18% Similarity=0.187 Sum_probs=51.6
Q ss_pred CCCCeeEEEEeecCCccEEEEecCCCeEEEEEccC----------CCceeEEE-ee------cCCCccceEEEEecCC--
Q 017553 288 PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS----------SPPVLIAR-LS------HAQSKSPIRQTAMSYD-- 348 (369)
Q Consensus 288 ~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~----------~~~~~~~~-~~------~~~~~~~v~~~~~s~~-- 348 (369)
..-.|..+.++|+|. +++..+..| |.|..+.. ++.....+ +. .......|..+.|+|.
T Consensus 83 ~~f~v~~i~~n~~g~--~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~ 159 (717)
T PF10168_consen 83 PLFEVHQISLNPTGS--LLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSE 159 (717)
T ss_pred CceeEEEEEECCCCC--EEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCC
Confidence 345788999999997 777666665 44444421 11111111 11 1234468999999996
Q ss_pred -CCEEEEeecCCeEEEEecCC
Q 017553 349 -GSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 349 -~~~l~s~~~dg~i~vw~~~~ 368 (369)
+..|+.-..|+.+|+||+..
T Consensus 160 ~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 160 SDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred CCCeEEEEecCCEEEEEecCC
Confidence 47888888999999999863
No 434
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.72 E-value=2.2 Score=35.88 Aligned_cols=80 Identities=20% Similarity=0.146 Sum_probs=47.3
Q ss_pred eeeeccCCCCCeeEEEEeecCC-----ccEEEEecCCCeEEEEEccCCCcee-EEEeecCCCccceEEEEecCCCCEEEE
Q 017553 281 ILQKYPVPECDIWFIKFSCDFH-----YNAAAIGNREGKIFVWELQSSPPVL-IARLSHAQSKSPIRQTAMSYDGSTILS 354 (369)
Q Consensus 281 ~~~~~~~~~~~i~~~~~s~~~~-----~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s 354 (369)
++..+..+ ..+..+.|-.... ..++++.-..+.|....+....... ...+ .......+..+++.|||.++++
T Consensus 245 P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~r~~~v~~~pDG~Lyv~ 322 (331)
T PF07995_consen 245 PVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEF-LGGFGGRPRDVAQGPDGALYVS 322 (331)
T ss_dssp -SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEE-CTTSSS-EEEEEEETTSEEEEE
T ss_pred cceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEc-cccCCCCceEEEEcCCCeEEEE
Confidence 33444444 4556666664332 2366666667889988887553211 1221 2234458999999999999998
Q ss_pred eecCCeEE
Q 017553 355 CCEDGAIW 362 (369)
Q Consensus 355 ~~~dg~i~ 362 (369)
.+.+|.|+
T Consensus 323 ~d~~G~iy 330 (331)
T PF07995_consen 323 DDSDGKIY 330 (331)
T ss_dssp E-TTTTEE
T ss_pred ECCCCeEe
Confidence 88888775
No 435
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.71 E-value=4 Score=38.66 Aligned_cols=119 Identities=13% Similarity=0.171 Sum_probs=69.9
Q ss_pred ccEEEEecCCc-EEEEEecCCceeEEEeeeccCCc---ccceeEEEeeec--------------CCCccEEEEeecCCeE
Q 017553 49 FNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDK---EESFYTVSWACN--------------VDGIPFLVAGGINGII 110 (369)
Q Consensus 49 ~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~--------------~~g~~~l~~~~~dg~i 110 (369)
+..+..++.++ |.-.|..+|+.+-.......... ......+++.-. ..+. .++.++.|+.+
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~-rV~~~T~Dg~L 272 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCAR-RIILPTSDARL 272 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCC-EEEEecCCCeE
Confidence 44555555555 88899889888776553221100 000111222111 1233 68888899999
Q ss_pred EEEEcCCccccceeeccccceE-------------EEEecCC-CCceEEEEeC----------CCcEEEEEccCCcEEEE
Q 017553 111 RVIDVSNEKLHKSFVGHGDSIN-------------EIRTQPL-KPSLVVSASK----------DESVRLWNVQTGICILI 166 (369)
Q Consensus 111 ~vwd~~~~~~~~~~~~~~~~v~-------------~~~~~~~-~~~~l~s~~~----------dg~i~vwd~~~~~~~~~ 166 (369)
.-.|.++|+.+..+.. .+.|. .+.-.|. .+..++.|+. +|.|+-+|.++|+.+..
T Consensus 273 iALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~ 351 (764)
T TIGR03074 273 IALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA 351 (764)
T ss_pred EEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence 9999999998876642 22221 0111110 1235555542 68899999999999998
Q ss_pred eec
Q 017553 167 FAG 169 (369)
Q Consensus 167 ~~~ 169 (369)
+..
T Consensus 352 ~~~ 354 (764)
T TIGR03074 352 WDP 354 (764)
T ss_pred Eec
Confidence 863
No 436
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=94.62 E-value=2.5 Score=35.91 Aligned_cols=42 Identities=14% Similarity=0.201 Sum_probs=24.3
Q ss_pred eEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCC
Q 017553 314 KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDG 359 (369)
Q Consensus 314 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 359 (369)
.+.+||..+.+...+..++.. .-...+..-++++++.|+.+.
T Consensus 291 ~~e~yd~~~~~W~~~~~lp~~----~~~~~~~~~~~~iyv~GG~~~ 332 (346)
T TIGR03547 291 SSEVYALDNGKWSKVGKLPQG----LAYGVSVSWNNGVLLIGGENS 332 (346)
T ss_pred EeeEEEecCCcccccCCCCCC----ceeeEEEEcCCEEEEEeccCC
Confidence 577899887765444444311 111223345778888887653
No 437
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=94.55 E-value=1.1 Score=31.42 Aligned_cols=105 Identities=9% Similarity=0.216 Sum_probs=61.5
Q ss_pred EEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEee---cCCccEEEEecCCCeEEEEEccCCCceeE
Q 017553 252 FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSC---DFHYNAAAIGNREGKIFVWELQSSPPVLI 328 (369)
Q Consensus 252 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~---~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 328 (369)
.|++++.-|+|.|++.......... ....+..+.. ...|++++-.+ +..+..|+.|+.. .+..||+........
T Consensus 12 cL~~aT~~gKV~IH~ph~~~~~~~~-~~~~i~~LNi-n~~italaaG~l~~~~~~D~LliGt~t-~llaYDV~~N~d~Fy 88 (136)
T PF14781_consen 12 CLACATTGGKVFIHNPHERGQRTGR-QDSDISFLNI-NQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDVENNSDLFY 88 (136)
T ss_pred eEEEEecCCEEEEECCCcccccccc-ccCceeEEEC-CCceEEEEEEecCCCCCcCEEEEeccc-eEEEEEcccCchhhh
Confidence 6788889999999998765432211 1112333332 24566665443 4444578877765 699999998865555
Q ss_pred EEeecCCCccceEEEEecC----CCCEEEEeecCCeEEEEe
Q 017553 329 ARLSHAQSKSPIRQTAMSY----DGSTILSCCEDGAIWRWD 365 (369)
Q Consensus 329 ~~~~~~~~~~~v~~~~~s~----~~~~l~s~~~dg~i~vw~ 365 (369)
+.++ ..|+++.+-. +..++++|+ +..|.-||
T Consensus 89 ke~~-----DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd 123 (136)
T PF14781_consen 89 KEVP-----DGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFD 123 (136)
T ss_pred hhCc-----cceeEEEEEecCCCCCcEEEECc-eEEEEEeC
Confidence 5444 4577776632 334555554 44444444
No 438
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.37 E-value=4.1 Score=37.41 Aligned_cols=50 Identities=14% Similarity=0.285 Sum_probs=36.8
Q ss_pred CcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccC
Q 017553 151 ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206 (369)
Q Consensus 151 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~ 206 (369)
-.|+|++. +|+.+..+. -..+.+-.+.|+. ...|++...+|++++|++-.
T Consensus 64 ~~I~If~~-sG~lL~~~~---w~~~~lI~mgWs~--~eeLI~v~k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRIL---WKHGELIGMGWSD--DEELICVQKDGTVHVYGLLG 113 (829)
T ss_pred eeEEEEec-cccchHHHH---hcCCCeeeecccC--CceEEEEeccceEEEeecch
Confidence 45888887 466665554 2334788899994 55677888999999999876
No 439
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.35 E-value=2.5 Score=34.84 Aligned_cols=235 Identities=12% Similarity=0.053 Sum_probs=100.8
Q ss_pred eEEEEEeeccCCCccEEEEecCCcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEc
Q 017553 36 LYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDV 115 (369)
Q Consensus 36 v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~ 115 (369)
.++|.|.. .+.+++| ..++.+-....|+....+.... .-......+... .++. .+++ +..|.| |..
T Consensus 64 l~~I~f~~-----~~g~ivG-~~g~ll~T~DgG~tW~~v~l~~--~lpgs~~~i~~l--~~~~-~~l~-~~~G~i--y~T 129 (302)
T PF14870_consen 64 LNSISFDG-----NEGWIVG-EPGLLLHTTDGGKTWERVPLSS--KLPGSPFGITAL--GDGS-AELA-GDRGAI--YRT 129 (302)
T ss_dssp EEEEEEET-----TEEEEEE-ETTEEEEESSTTSS-EE----T--T-SS-EEEEEEE--ETTE-EEEE-ETT--E--EEE
T ss_pred EEEEEecC-----CceEEEc-CCceEEEecCCCCCcEEeecCC--CCCCCeeEEEEc--CCCc-EEEE-cCCCcE--EEe
Confidence 56777764 3455554 4455555555566555543110 111222323322 3343 3333 444544 333
Q ss_pred CC-cccc-ceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEE
Q 017553 116 SN-EKLH-KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASC 193 (369)
Q Consensus 116 ~~-~~~~-~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 193 (369)
.+ |+.- .....-.+.+..+.-++ ++.+++++..-....-||.....-...-. .....|..+.|.| ++.+.+.+
T Consensus 130 ~DgG~tW~~~~~~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r---~~~~riq~~gf~~-~~~lw~~~ 204 (302)
T PF14870_consen 130 TDGGKTWQAVVSETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNR---NSSRRIQSMGFSP-DGNLWMLA 204 (302)
T ss_dssp SSTTSSEEEEE-S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE-----SSS-EEEEEE-T-TS-EEEEE
T ss_pred CCCCCCeeEcccCCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEcc---CccceehhceecC-CCCEEEEe
Confidence 33 3321 22233446788888888 88888777665555567754322222222 3567899999999 77665544
Q ss_pred eeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee-CcEEEEeecCCeEEEecCCCCCC
Q 017553 194 GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQ 272 (369)
Q Consensus 194 ~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~ 272 (369)
..|.|++=+........ ..++.......-.+..++|. ++.+.+++..|.+.. ....++
T Consensus 205 -~Gg~~~~s~~~~~~~~w------------------~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~-S~DgGk- 263 (302)
T PF14870_consen 205 -RGGQIQFSDDPDDGETW------------------SEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLV-STDGGK- 263 (302)
T ss_dssp -TTTEEEEEE-TTEEEEE---------------------B-TTSS--S-EEEEEESSSS-EEEEESTT-EEE-ESSTTS-
T ss_pred -CCcEEEEccCCCCcccc------------------ccccCCcccCceeeEEEEecCCCCEEEEeCCccEEE-eCCCCc-
Confidence 78888887722211100 11111111223346777886 445555555564433 333333
Q ss_pred CCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEE
Q 017553 273 SPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW 318 (369)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~ 318 (369)
..+.......-...+..+.|..+.+ -.+-+.+|.|.-|
T Consensus 264 -----tW~~~~~~~~~~~n~~~i~f~~~~~---gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 264 -----TWQKDRVGENVPSNLYRIVFVNPDK---GFVLGQDGVLLRY 301 (302)
T ss_dssp -----S-EE-GGGTTSSS---EEEEEETTE---EEEE-STTEEEEE
T ss_pred -----cceECccccCCCCceEEEEEcCCCc---eEEECCCcEEEEe
Confidence 1112222222235577888887653 3334567776554
No 440
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=93.99 E-value=2.8 Score=34.08 Aligned_cols=214 Identities=14% Similarity=0.137 Sum_probs=112.5
Q ss_pred ceEEEEecCCCCceEEEEeCCCcEEEEEcc------CCcE-EEEeeccCC--CCCcEEEEEecCC-----------CceE
Q 017553 130 SINEIRTQPLKPSLVVSASKDESVRLWNVQ------TGIC-ILIFAGAGG--HRNEVLSVDFHPS-----------DIYR 189 (369)
Q Consensus 130 ~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~------~~~~-~~~~~~~~~--~~~~v~~~~~~~~-----------~~~~ 189 (369)
.-+.|+++| .+.+-++....+...+||.. ..+. +..+....+ .....+.+.|+.. ....
T Consensus 24 N~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 457899999 77888888888999999986 1222 222221111 2345677777741 1123
Q ss_pred EEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeec-cCCCce-eeeeee----CcEEEEe-ecCCeE
Q 017553 190 IASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS-VHSNYV-DCNRWL----GDFILSK-SVDNEI 262 (369)
Q Consensus 190 l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v-~~~~~~----~~~l~~~-~~d~~i 262 (369)
++.+++||+|.-|...-...... .....+. .....| ..+++- +++|..+ -..++|
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~------------------~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~I 164 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMT------------------RAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRI 164 (336)
T ss_pred EEEEeCCceEEeecCcCCccccc------------------ccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCce
Confidence 67788999999998543211000 0001111 011111 112221 3444433 347788
Q ss_pred EEecCCCCCCCCCCCccc--eeeeccCC-----CC--CeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeec
Q 017553 263 VLWEPKMKEQSPGEGTAD--ILQKYPVP-----EC--DIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSH 333 (369)
Q Consensus 263 ~i~d~~~~~~~~~~~~~~--~~~~~~~~-----~~--~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 333 (369)
.+||-.-.+......... +...+... .+ .|+-..-.++.+ .=+.|..-|.|-+||.... +++++..
T Consensus 165 DVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~--d~v~G~G~G~VdvFd~~G~---l~~r~as 239 (336)
T TIGR03118 165 DVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRN--DEVAGAGLGYVNVFTLNGQ---LLRRVAS 239 (336)
T ss_pred EEecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCccc--ccccCCCcceEEEEcCCCc---EEEEecc
Confidence 888765432110000000 00000000 00 011111112221 2233455689999998764 6677766
Q ss_pred CCCccceEEEEecC------CCCEEEEeecCCeEEEEecC
Q 017553 334 AQSKSPIRQTAMSY------DGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 334 ~~~~~~v~~~~~s~------~~~~l~s~~~dg~i~vw~~~ 367 (369)
.+.-...+.|+..| .|.+|+---.||+|..||..
T Consensus 240 ~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~ 279 (336)
T TIGR03118 240 SGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQ 279 (336)
T ss_pred CCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCC
Confidence 66667778888866 46777766689999999965
No 441
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.92 E-value=0.54 Score=36.72 Aligned_cols=68 Identities=18% Similarity=0.394 Sum_probs=47.5
Q ss_pred EeecCCccEEEEecCCCeEEEEEccCCCceeEE-Ee---ecC------CCccceEEEEecCCCCEEEEeecCCeEEEEec
Q 017553 297 FSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA-RL---SHA------QSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 366 (369)
Q Consensus 297 ~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~---~~~------~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~ 366 (369)
+..+++ +|++-+.+|.+++||+.+.+..... .+ -.. .....|..+.++.+|.-|++-+ +|..+.|+.
T Consensus 18 l~~~~~--~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNGS--YLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEeCCC--EEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence 455564 7888899999999999987532211 00 010 2446789999999998777665 578899985
Q ss_pred C
Q 017553 367 I 367 (369)
Q Consensus 367 ~ 367 (369)
.
T Consensus 95 ~ 95 (219)
T PF07569_consen 95 D 95 (219)
T ss_pred c
Confidence 4
No 442
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=93.87 E-value=1.5 Score=30.66 Aligned_cols=100 Identities=8% Similarity=0.074 Sum_probs=62.9
Q ss_pred EEEEeecCCeEEEEEcCCcc--------ccceeeccccceEEEEecCC----CCceEEEEeCCCcEEEEEccCCcEEEEe
Q 017553 100 FLVAGGINGIIRVIDVSNEK--------LHKSFVGHGDSINEIRTQPL----KPSLVVSASKDESVRLWNVQTGICILIF 167 (369)
Q Consensus 100 ~l~~~~~dg~i~vwd~~~~~--------~~~~~~~~~~~v~~~~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 167 (369)
.|++++.-|.|.|++..... .+..+. -...|++|+--+. +...|+.|+. ..+..||+..+..+..-
T Consensus 12 cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N~d~Fyk 89 (136)
T PF14781_consen 12 CLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENNSDLFYK 89 (136)
T ss_pred eEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccCchhhhh
Confidence 68888888999999875432 233333 4566777764432 3456666665 68999999887766544
Q ss_pred eccCCCCCcEEEEEecC---CCceEEEEEeeCCcEEEEEccC
Q 017553 168 AGAGGHRNEVLSVDFHP---SDIYRIASCGMDNTVKIWSMKE 206 (369)
Q Consensus 168 ~~~~~~~~~v~~~~~~~---~~~~~l~~~~~d~~v~i~d~~~ 206 (369)
. -.+.|.++.+-. .... ++..+.+..|.-||...
T Consensus 90 e----~~DGvn~i~~g~~~~~~~~-l~ivGGncsi~Gfd~~G 126 (136)
T PF14781_consen 90 E----VPDGVNAIVIGKLGDIPSP-LVIVGGNCSIQGFDYEG 126 (136)
T ss_pred h----CccceeEEEEEecCCCCCc-EEEECceEEEEEeCCCC
Confidence 3 556777777632 1233 44444456777777665
No 443
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=93.70 E-value=3.7 Score=34.48 Aligned_cols=99 Identities=8% Similarity=-0.003 Sum_probs=46.5
Q ss_pred eCcEEEEeec-----CCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCC----eEEEEE
Q 017553 249 LGDFILSKSV-----DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG----KIFVWE 319 (369)
Q Consensus 249 ~~~~l~~~~~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg----~i~i~d 319 (369)
.+.+.+.|+. ...+..||+.+.+ ...+..++.. ......+...+++ +.+.|+.++ .+..||
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~-------W~~~~~~p~~-~r~~~~~~~~~~~--iYv~GG~~~~~~~~~~~yd 192 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQE-------WFELPDFPGE-PRVQPVCVKLQNE--LYVFGGGSNIAYTDGYKYS 192 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCC-------eeECCCCCCC-CCCcceEEEECCE--EEEEcCCCCccccceEEEe
Confidence 3566666664 2458888887653 1122222111 1112222334443 666666543 356889
Q ss_pred ccCCCceeEEEeecCCCcc---ceEEEEecCCCCEEEEeecC
Q 017553 320 LQSSPPVLIARLSHAQSKS---PIRQTAMSYDGSTILSCCED 358 (369)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~s~~~d 358 (369)
..+.+...+..+....... ....+. ..++.+++.|+.+
T Consensus 193 ~~~~~W~~~~~~~~~~~p~~~~~~~~~~-~~~~~iyv~GG~~ 233 (323)
T TIGR03548 193 PKKNQWQKVADPTTDSEPISLLGAASIK-INESLLLCIGGFN 233 (323)
T ss_pred cCCCeeEECCCCCCCCCceeccceeEEE-ECCCEEEEECCcC
Confidence 8887543333221000000 111122 2356788888866
No 444
>PRK10115 protease 2; Provisional
Probab=93.45 E-value=6.9 Score=36.82 Aligned_cols=111 Identities=12% Similarity=0.060 Sum_probs=60.9
Q ss_pred CeEEEEEeeccCCCccEEEEecCC----c--EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecC-
Q 017553 35 PLYAVVFNFIDSRYFNVFATVGGN----R--VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN- 107 (369)
Q Consensus 35 ~v~~~~~s~~~~~~~~~la~~~~~----~--v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~d- 107 (369)
.+..+.+|| ++++||.+.+. . +++.|+.++..+...- .... ..++|. +|++.++++...+
T Consensus 128 ~l~~~~~Sp----dg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i------~~~~-~~~~w~--~D~~~~~y~~~~~~ 194 (686)
T PRK10115 128 TLGGMAITP----DNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL------DNVE-PSFVWA--NDSWTFYYVRKHPV 194 (686)
T ss_pred EEeEEEECC----CCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc------cCcc-eEEEEe--eCCCEEEEEEecCC
Confidence 366677888 67888776432 2 8888887775322211 0111 448887 7887455554422
Q ss_pred ----CeEEEEEcCCc--cccceeeccccceEEEEecCCCCceEEEEe---CCCcEEEEEc
Q 017553 108 ----GIIRVIDVSNE--KLHKSFVGHGDSINEIRTQPLKPSLVVSAS---KDESVRLWNV 158 (369)
Q Consensus 108 ----g~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~---~dg~i~vwd~ 158 (369)
..|+.+++.++ +-...+........-..+.+.++..++..+ .++.+.+++.
T Consensus 195 ~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 195 TLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred CCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 36888888877 333334332333332223332555544433 2457888884
No 445
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=93.35 E-value=4.2 Score=34.11 Aligned_cols=64 Identities=11% Similarity=0.016 Sum_probs=32.8
Q ss_pred CCceEEEEeCC-----CcEEEEEccCCcEE---EEeeccCCCCCcEEEEEecCCCceEEEEEeeC-----CcEEEEEccC
Q 017553 140 KPSLVVSASKD-----ESVRLWNVQTGICI---LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD-----NTVKIWSMKE 206 (369)
Q Consensus 140 ~~~~l~s~~~d-----g~i~vwd~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----~~v~i~d~~~ 206 (369)
++.+++.|+.+ ..+..+|+.+.+.. ..+..+. ....-.+++.. ++.+++.|+.. ..+..||+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp-~~~~~~~~~~~--~~~iYv~GG~~~~~~~~~v~~yd~~~ 148 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLP-FTFENGSACYK--DGTLYVGGGNRNGKPSNKSYLFNLET 148 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCC-cCccCceEEEE--CCEEEEEeCcCCCccCceEEEEcCCC
Confidence 45677777754 35667777765531 2222111 11111223333 56777777742 3567777765
No 446
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=93.21 E-value=3.6 Score=32.88 Aligned_cols=225 Identities=16% Similarity=0.087 Sum_probs=120.6
Q ss_pred cCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCC
Q 017553 94 NVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGH 173 (369)
Q Consensus 94 ~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 173 (369)
.|||. .-+++...|.|--.|..+++....--+....-..|..-| ++..-++-+.. .|.-.|.++.+..+.-.....-
T Consensus 70 apdG~-VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gp-dg~~Witd~~~-aI~R~dpkt~evt~f~lp~~~a 146 (353)
T COG4257 70 APDGA-VWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGP-DGSAWITDTGL-AIGRLDPKTLEVTRFPLPLEHA 146 (353)
T ss_pred CCCCc-eEEecCccccceecCCCCCceEEEecCCCCCCceEEECC-CCCeeEecCcc-eeEEecCcccceEEeecccccC
Confidence 38898 788888888888889888886655445555566777778 55555443332 4555565555433221111123
Q ss_pred CCcEEEEEecCCCceEEEEEeeC---------CcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCcee
Q 017553 174 RNEVLSVDFHPSDIYRIASCGMD---------NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD 244 (369)
Q Consensus 174 ~~~v~~~~~~~~~~~~l~~~~~d---------~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 244 (369)
........|.+ .+++.+++... +.|++|+...+ ....-.
T Consensus 147 ~~nlet~vfD~-~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG-------------------------------~gpyGi 194 (353)
T COG4257 147 DANLETAVFDP-WGNLWFTGQIGAYGRLDPARNVISVFPAPQG-------------------------------GGPYGI 194 (353)
T ss_pred CCcccceeeCC-CccEEEeeccccceecCcccCceeeeccCCC-------------------------------CCCcce
Confidence 34567788988 88888877521 23444443321 111112
Q ss_pred eeeeeCcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCC
Q 017553 245 CNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP 324 (369)
Q Consensus 245 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~ 324 (369)
|+..+|..-++.-.++.|-..|..+.... .+..-.........+--+|.++ .-++-...+.++.||.....
T Consensus 195 ~atpdGsvwyaslagnaiaridp~~~~ae-------v~p~P~~~~~gsRriwsdpig~--~wittwg~g~l~rfdPs~~s 265 (353)
T COG4257 195 CATPDGSVWYASLAGNAIARIDPFAGHAE-------VVPQPNALKAGSRRIWSDPIGR--AWITTWGTGSLHRFDPSVTS 265 (353)
T ss_pred EECCCCcEEEEeccccceEEcccccCCcc-------eecCCCcccccccccccCccCc--EEEeccCCceeeEeCccccc
Confidence 23333665555556666777777665321 1111111112233344445554 66666677888888877654
Q ss_pred ceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEe
Q 017553 325 PVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 365 (369)
Q Consensus 325 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~ 365 (369)
. ....+. +....-.++.....++.-.+--..|.|.-+|
T Consensus 266 W-~eypLP--gs~arpys~rVD~~grVW~sea~agai~rfd 303 (353)
T COG4257 266 W-IEYPLP--GSKARPYSMRVDRHGRVWLSEADAGAIGRFD 303 (353)
T ss_pred c-eeeeCC--CCCCCcceeeeccCCcEEeeccccCceeecC
Confidence 2 222333 4444455555555555444333334444443
No 447
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.08 E-value=5.3 Score=34.45 Aligned_cols=116 Identities=9% Similarity=0.171 Sum_probs=75.0
Q ss_pred CcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccc----cceeeccccceEEEEecCCCCceEEEEeCCCcEEEE
Q 017553 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL----HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLW 156 (369)
Q Consensus 81 ~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vw 156 (369)
..+++|.++.|+ +|++ .||+--.+.+|.+++....+. ..+.+..+..|....|+. + .-++.....| +-+|
T Consensus 64 ~d~G~I~SIkFS--lDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~-s-~e~A~i~~~G-~e~y 137 (657)
T KOG2377|consen 64 DDKGEIKSIKFS--LDNK-ILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTS-S-TEIAFITDQG-IEFY 137 (657)
T ss_pred cCCCceeEEEec--cCcc-eEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEec-C-eeEEEEecCC-eEEE
Confidence 456789999888 9998 999999999999999733222 233344556789999986 3 5555555544 5666
Q ss_pred EccCC-cEEEEeeccCCCCCcEEEEEecCCCceEEE-EEe-eCCcEEEEEccC
Q 017553 157 NVQTG-ICILIFAGAGGHRNEVLSVDFHPSDIYRIA-SCG-MDNTVKIWSMKE 206 (369)
Q Consensus 157 d~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~-~d~~v~i~d~~~ 206 (369)
.+... +.++..+ .|...|.-..|.+ +.+.++ +.+ ..+++.=+-++.
T Consensus 138 ~v~pekrslRlVk---s~~~nvnWy~yc~-et~v~LL~t~~~~n~lnpf~~~~ 186 (657)
T KOG2377|consen 138 QVLPEKRSLRLVK---SHNLNVNWYMYCP-ETAVILLSTTVLENVLNPFHFRA 186 (657)
T ss_pred EEchhhhhhhhhh---hcccCccEEEEcc-ccceEeeeccccccccccEEEee
Confidence 55432 3344444 5888888888988 555443 333 334444444444
No 448
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.00 E-value=5 Score=39.31 Aligned_cols=28 Identities=18% Similarity=0.229 Sum_probs=22.0
Q ss_pred EEeeecCCCccEEEEeecCCeEEEEEcCC
Q 017553 89 VSWACNVDGIPFLVAGGINGIIRVIDVSN 117 (369)
Q Consensus 89 ~~~~~~~~g~~~l~~~~~dg~i~vwd~~~ 117 (369)
..+.++|... +++.+..+|.|+++-...
T Consensus 39 ~~~afD~~q~-llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 39 SALAFDPTQG-LLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred cceeeccccc-eEEEEEecccEEEecccc
Confidence 4455558877 999999999999997543
No 449
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.68 E-value=3.7 Score=31.58 Aligned_cols=149 Identities=14% Similarity=0.131 Sum_probs=84.6
Q ss_pred EEEEeecCCeEEEEEcCC--ccccceeeccccceEEEEecCCCCceEEEEeCCC------cEEEE---Ecc--CCcEEE-
Q 017553 100 FLVAGGINGIIRVIDVSN--EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDE------SVRLW---NVQ--TGICIL- 165 (369)
Q Consensus 100 ~l~~~~~dg~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg------~i~vw---d~~--~~~~~~- 165 (369)
.|+.+...+.|.+|++.+ .+...+|..- +.|..+.++. .|++|++--.+. .+|+| +.. ...++.
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred eEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 455546678899999883 3455666643 7899999999 899999864332 45664 221 111221
Q ss_pred --------------------EeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCC
Q 017553 166 --------------------IFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFP 225 (369)
Q Consensus 166 --------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~ 225 (369)
.++. .-..++.+++..|..|++++. + ++++.+|.+....... ..+.
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiEl--Pl~~~p~ciaCC~~tG~LlVg-~-~~~l~lf~l~~~~~~~-~~~~--------- 173 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIEL--PLSEPPLCIACCPVTGNLLVG-C-GNKLVLFTLKYQTIQS-EKFS--------- 173 (215)
T ss_pred EEcccccccCCCCccccceEEEEe--cCCCCCCEEEecCCCCCEEEE-c-CCEEEEEEEEEEEEec-cccc---------
Confidence 1111 134567888888877775554 3 5689999887732210 0000
Q ss_pred CceeecceeeeccCCC-ceeeeeeeCcEEEEeecCCeEEEecC
Q 017553 226 TKYVQFPVFIASVHSN-YVDCNRWLGDFILSKSVDNEIVLWEP 267 (369)
Q Consensus 226 ~~~~~~~~~~~~~~~~-~v~~~~~~~~~l~~~~~d~~i~i~d~ 267 (369)
........+..|.+ ....+++.+++++..+ +..++++.+
T Consensus 174 --~lDFe~~l~~~~~~~~p~~v~ic~~yiA~~s-~~ev~Vlkl 213 (215)
T PF14761_consen 174 --FLDFERSLIDHIDNFKPTQVAICEGYIAVMS-DLEVLVLKL 213 (215)
T ss_pred --EEechhhhhheecCceEEEEEEEeeEEEEec-CCEEEEEEE
Confidence 00111111222333 2566777788888755 445555543
No 450
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=92.52 E-value=6.4 Score=33.94 Aligned_cols=40 Identities=13% Similarity=0.087 Sum_probs=22.3
Q ss_pred EEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecC
Q 017553 315 IFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCED 358 (369)
Q Consensus 315 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 358 (369)
+.+||..+.+......++.. ..... +..-++.+++.|+..
T Consensus 314 ~e~yd~~~~~W~~~~~lp~~--r~~~~--av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQG--LAYGV--SVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCcccccCcCCCC--ccceE--EEEeCCEEEEEcCCC
Confidence 56899888765544444321 11222 333467788888753
No 451
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=92.50 E-value=7.4 Score=34.67 Aligned_cols=152 Identities=11% Similarity=0.029 Sum_probs=81.6
Q ss_pred CCcCeEEEEEeeccCCCccEEEEecCCcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEE
Q 017553 32 GKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIR 111 (369)
Q Consensus 32 h~~~v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~ 111 (369)
-..+|.++.+.- ...+-.|..+++..||..+++.+..... .....|+.+... -.|+ |..|+.+| |.
T Consensus 163 ~d~~V~aLv~D~-----~g~lWvgT~dGL~~fd~~~gkalql~s~----~~dk~I~al~~d--~qg~--LWVGTdqG-v~ 228 (671)
T COG3292 163 KDTPVVALVFDA-----NGRLWVGTPDGLSYFDAGRGKALQLASP----PLDKAINALIAD--VQGR--LWVGTDQG-VY 228 (671)
T ss_pred cCccceeeeeec-----cCcEEEecCCcceEEccccceEEEcCCC----cchhhHHHHHHH--hcCc--EEEEeccc-eE
Confidence 356788898887 3467777889999999888876655442 233566666554 4565 88888877 66
Q ss_pred EEEcCCccccceeec-cccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEE
Q 017553 112 VIDVSNEKLHKSFVG-HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRI 190 (369)
Q Consensus 112 vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 190 (369)
+.+.+..+...-... ..+.|..+.-.. ...+-.|+..|..+. ................--..|.++-... +++ +
T Consensus 229 ~~e~~G~~~sn~~~~lp~~~I~ll~qD~--qG~lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~~S~vnsL~~D~-dGs-L 303 (671)
T COG3292 229 LQEAEGWRASNWGPMLPSGNILLLVQDA--QGELWIGTENGLWRT-RLPRQGLQIPLSKMHLGVSTVNSLWLDT-DGS-L 303 (671)
T ss_pred EEchhhccccccCCCCcchheeeeeccc--CCCEEEeecccceeE-ecCCCCccccccccCCccccccceeecc-CCC-E
Confidence 666544221111111 223444444333 334556666664433 2222222222221111123455666554 555 5
Q ss_pred EEEeeCCcEEEE
Q 017553 191 ASCGMDNTVKIW 202 (369)
Q Consensus 191 ~~~~~d~~v~i~ 202 (369)
-++..++.+++-
T Consensus 304 Wv~t~~giv~~~ 315 (671)
T COG3292 304 WVGTYGGIVRYL 315 (671)
T ss_pred eeeccCceEEEe
Confidence 566666655543
No 452
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=92.49 E-value=6.1 Score=33.67 Aligned_cols=203 Identities=12% Similarity=0.137 Sum_probs=106.9
Q ss_pred CCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecC----CCceE-EEEEee-C---CcEEEEEccCceee
Q 017553 140 KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHP----SDIYR-IASCGM-D---NTVKIWSMKEFWTY 210 (369)
Q Consensus 140 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~-l~~~~~-d---~~v~i~d~~~~~~~ 210 (369)
...+++...+++-+.+||+. |+.++.+. .+.++.+..-. .+... |+.++. + .+|++|.+......
T Consensus 67 ~kSlIigTdK~~GL~VYdL~-Gk~lq~~~-----~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~ 140 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLD-GKELQSLP-----VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE 140 (381)
T ss_dssp GG-EEEEEETTTEEEEEETT-S-EEEEE------SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE
T ss_pred ccceEEEEeCCCCEEEEcCC-CcEEEeec-----CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc
Confidence 45578888889999999996 66666664 23444443321 02222 344433 2 46999988742111
Q ss_pred eeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee-----Cc-EEEEeecCCeEEEecCCCCCCCCCCCccceeee
Q 017553 211 VEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-----GD-FILSKSVDNEIVLWEPKMKEQSPGEGTADILQK 284 (369)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 284 (369)
+..... . ..+ +......+..+++. +. +++....+|.+..|.+...... ......+++
T Consensus 141 L~~v~~-~-----------~~p---~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g--~v~~~lVR~ 203 (381)
T PF02333_consen 141 LTDVTD-P-----------AAP---IATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDG--KVSATLVRE 203 (381)
T ss_dssp EEE-CB-T-----------TC----EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTS--SEEEEEEEE
T ss_pred ceEcCC-C-----------Ccc---cccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCC--cEeeEEEEE
Confidence 110000 0 000 11112234555552 33 6777888999988888643211 012235666
Q ss_pred ccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCC---ceeEEEeecCCCccceEEEEec--CCCC-EEE-Eeec
Q 017553 285 YPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP---PVLIARLSHAQSKSPIRQTAMS--YDGS-TIL-SCCE 357 (369)
Q Consensus 285 ~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~~~~v~~~~~s--~~~~-~l~-s~~~ 357 (369)
+... ..+..++...... .|..+-++--|.-|+.+... ...+...........|..|+.- +++. ||+ |.-.
T Consensus 204 f~~~-sQ~EGCVVDDe~g--~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG 280 (381)
T PF02333_consen 204 FKVG-SQPEGCVVDDETG--RLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQG 280 (381)
T ss_dssp EE-S-S-EEEEEEETTTT--EEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGG
T ss_pred ecCC-CcceEEEEecccC--CEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCC
Confidence 6654 3677777776664 88889999888888887432 2223222222334567777775 3442 444 4446
Q ss_pred CCeEEEEecCC
Q 017553 358 DGAIWRWDAIP 368 (369)
Q Consensus 358 dg~i~vw~~~~ 368 (369)
++...||+.+.
T Consensus 281 ~~sf~Vy~r~~ 291 (381)
T PF02333_consen 281 DNSFAVYDREG 291 (381)
T ss_dssp GTEEEEEESST
T ss_pred CCeEEEEecCC
Confidence 77899998763
No 453
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.30 E-value=6.5 Score=34.61 Aligned_cols=76 Identities=11% Similarity=0.130 Sum_probs=48.7
Q ss_pred CeeEEEEeecCCccEEEEecCCCeEEEEE---------ccCCCceeEEEee-------cCCCccceEEEEecCCC---CE
Q 017553 291 DIWFIKFSCDFHYNAAAIGNREGKIFVWE---------LQSSPPVLIARLS-------HAQSKSPIRQTAMSYDG---ST 351 (369)
Q Consensus 291 ~i~~~~~s~~~~~~~l~~~~~dg~i~i~d---------~~~~~~~~~~~~~-------~~~~~~~v~~~~~s~~~---~~ 351 (369)
.|..+..++.|. .++..+.+|.+.++= ++++++...++.. .....-.+..++|+|+. ..
T Consensus 105 eV~~vl~s~~GS--~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h 182 (741)
T KOG4460|consen 105 EVYQVLLSPTGS--HVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH 182 (741)
T ss_pred EEEEEEecCCCc--eEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence 466777888886 777777888665543 2334333332221 01122356789999975 56
Q ss_pred EEEeecCCeEEEEecCC
Q 017553 352 ILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 352 l~s~~~dg~i~vw~~~~ 368 (369)
|..-+.|..||+||+..
T Consensus 183 L~iL~sdnviRiy~lS~ 199 (741)
T KOG4460|consen 183 LVLLTSDNVIRIYSLSE 199 (741)
T ss_pred EEEEecCcEEEEEecCC
Confidence 77778899999999864
No 454
>PLN02153 epithiospecifier protein
Probab=92.15 E-value=6.6 Score=33.28 Aligned_cols=54 Identities=9% Similarity=0.038 Sum_probs=28.6
Q ss_pred CeEEEEEccCCCceeEEEee-cCCCccceEEEEecCCCCEEEEeecC--------------CeEEEEecCC
Q 017553 313 GKIFVWELQSSPPVLIARLS-HAQSKSPIRQTAMSYDGSTILSCCED--------------GAIWRWDAIP 368 (369)
Q Consensus 313 g~i~i~d~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~d--------------g~i~vw~~~~ 368 (369)
..+.+||..+.+...+.... ..........+. .++++++.|+.. ..++.+|..+
T Consensus 217 ~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~ 285 (341)
T PLN02153 217 NAVQFFDPASGKWTEVETTGAKPSARSVFAHAV--VGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTET 285 (341)
T ss_pred CceEEEEcCCCcEEeccccCCCCCCcceeeeEE--ECCEEEEECcccCCccccccccccccccEEEEEcCc
Confidence 46899999887654443211 001111122222 356777777752 2567777654
No 455
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=92.13 E-value=12 Score=36.14 Aligned_cols=180 Identities=13% Similarity=0.102 Sum_probs=0.0
Q ss_pred EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEe-----------ecCCeEEEEEc-CCccccceeecc
Q 017553 60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG-----------GINGIIRVIDV-SNEKLHKSFVGH 127 (369)
Q Consensus 60 v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~-----------~~dg~i~vwd~-~~~~~~~~~~~~ 127 (369)
|++.|...+..+..+.-... ...-.+..+.|+-+++.. ++++| -.+|.++.|++ ..++.+.-+..-
T Consensus 855 I~~~d~~s~~~~~~~~l~~n-e~a~~v~~~~fs~~~~~~-~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T 932 (1205)
T KOG1898|consen 855 IRVFDPKSGKIICLVELGQN-EAAFSVCAVDFSSSEYQP-FVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKT 932 (1205)
T ss_pred EEEEcCCCCceEEEEeecCC-cchhheeeeeeccCCCce-EEEEEeeccccccccccCCCceEEEEEEecCceeeeeecc
Q ss_pred ccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCC-CCcEEEEEecCCCceEEEEEeeCCcEEEEEccC
Q 017553 128 GDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGH-RNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206 (369)
Q Consensus 128 ~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~ 206 (369)
.-+-.-.+..|..+..|+..+. .+++||+...+.++.... .+ ...|..+++ ....++.|...-.+.++..+.
T Consensus 933 ~~~~~v~Ai~~f~~~~LagvG~--~l~~YdlG~K~lLRk~e~--k~~p~~Is~iqt---~~~RI~VgD~qeSV~~~~y~~ 1005 (1205)
T KOG1898|consen 933 EIPGPVGAICPFQGRVLAGVGR--FLRLYDLGKKKLLRKCEL--KFIPNRISSIQT---YGARIVVGDIQESVHFVRYRR 1005 (1205)
T ss_pred CCCccceEEeccCCEEEEeccc--EEEEeeCChHHHHhhhhh--ccCceEEEEEee---cceEEEEeeccceEEEEEEec
Q ss_pred ceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee-CcEEEEeecCCeEEEecCC
Q 017553 207 FWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPK 268 (369)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~i~d~~ 268 (369)
...+..+.....-+..|+++.+- .+.++.+..-|.+.+..+.
T Consensus 1006 --------------------~~n~l~~fadD~~pR~Vt~~~~lD~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1006 --------------------EDNQLIVFADDPVPRHVTALELLDYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred --------------------CCCeEEEEeCCCccceeeEEEEecCCceeeccccCcEEEEECC
No 456
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=91.98 E-value=0.7 Score=24.67 Aligned_cols=32 Identities=22% Similarity=0.299 Sum_probs=22.8
Q ss_pred CCCccEEEEeecCCeEEEEEcCCccccceeec
Q 017553 95 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG 126 (369)
Q Consensus 95 ~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 126 (369)
|+++.++++...++.|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 45663445555688999999988877776664
No 457
>PLN02193 nitrile-specifier protein
Probab=91.93 E-value=8.8 Score=34.27 Aligned_cols=62 Identities=6% Similarity=0.041 Sum_probs=33.1
Q ss_pred EEEEecCC----CeEEEEEccCCCceeEEEee-cCCCccceEEEEecCCCCEEEEeecC--------------CeEEEEe
Q 017553 305 AAAIGNRE----GKIFVWELQSSPPVLIARLS-HAQSKSPIRQTAMSYDGSTILSCCED--------------GAIWRWD 365 (369)
Q Consensus 305 ~l~~~~~d----g~i~i~d~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~d--------------g~i~vw~ 365 (369)
+++.++.+ ..+.+||+.+.+...+.... .+.......++. -++++++.|+.+ ..+.+||
T Consensus 331 iyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D 408 (470)
T PLN02193 331 VWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAA--VGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALD 408 (470)
T ss_pred EEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEE--ECCEEEEECCccCCccccccCccceeccEEEEE
Confidence 55555544 46899999987654443321 011111122222 356777888753 1367777
Q ss_pred cCC
Q 017553 366 AIP 368 (369)
Q Consensus 366 ~~~ 368 (369)
+.+
T Consensus 409 ~~t 411 (470)
T PLN02193 409 TET 411 (470)
T ss_pred cCc
Confidence 654
No 458
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.87 E-value=0.23 Score=45.87 Aligned_cols=96 Identities=19% Similarity=0.274 Sum_probs=59.3
Q ss_pred cCCeEEEEEcC--Cccccceee-----ccccceEEEEecCC--CCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCc
Q 017553 106 INGIIRVIDVS--NEKLHKSFV-----GHGDSINEIRTQPL--KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNE 176 (369)
Q Consensus 106 ~dg~i~vwd~~--~~~~~~~~~-----~~~~~v~~~~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 176 (369)
.-|.+.||+++ .|+....+. .....+.-+.|.|. +.-++..+-.++.|++........ ..+. +|...
T Consensus 151 ~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~r---sHs~~ 226 (1283)
T KOG1916|consen 151 LVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFR---SHSQR 226 (1283)
T ss_pred HhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHH---hcCCC
Confidence 34678888875 344332222 12234455556552 445677777888999887654332 2222 46666
Q ss_pred EEEEE-----------ecCCCceEEEEEeeCCcEEEEEccC
Q 017553 177 VLSVD-----------FHPSDIYRIASCGMDNTVKIWSMKE 206 (369)
Q Consensus 177 v~~~~-----------~~~~~~~~l~~~~~d~~v~i~d~~~ 206 (369)
+..++ .+| ||..++.++.||.+++|.+.-
T Consensus 227 ~~d~a~~~~g~~~l~~lSp-DGtv~a~a~~dG~v~f~Qiyi 266 (1283)
T KOG1916|consen 227 VTDMAFFAEGVLKLASLSP-DGTVFAWAISDGSVGFYQIYI 266 (1283)
T ss_pred cccHHHHhhchhhheeeCC-CCcEEEEeecCCccceeeeee
Confidence 65554 477 888888888899888887754
No 459
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=91.79 E-value=4.2 Score=33.14 Aligned_cols=98 Identities=9% Similarity=0.125 Sum_probs=61.2
Q ss_pred CCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEe------CCCcEEEEEccCCcEEEEeec-c-CCCCCcEE
Q 017553 107 NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS------KDESVRLWNVQTGICILIFAG-A-GGHRNEVL 178 (369)
Q Consensus 107 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~-~-~~~~~~v~ 178 (369)
-..|++||..+.+-..--.+-.+.|++|.|.. +.++++.|. ....+..||+.+... ..+.. . ..-.++|.
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGPVT 92 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCcEE
Confidence 45699999887765555445678899999986 667777764 456788899876643 23331 0 12347888
Q ss_pred EEEecCCCc-eEEEEEe-eCC--cEEEEEccC
Q 017553 179 SVDFHPSDI-YRIASCG-MDN--TVKIWSMKE 206 (369)
Q Consensus 179 ~~~~~~~~~-~~l~~~~-~d~--~v~i~d~~~ 206 (369)
.+.+...+. ++.+.|. .++ .|..||=..
T Consensus 93 a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~ 124 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRSANGSTFLMKYDGSS 124 (281)
T ss_pred EEEeeccCCceEEEeceecCCCceEEEEcCCc
Confidence 888754344 4444443 333 455565443
No 460
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=91.78 E-value=8.6 Score=33.81 Aligned_cols=151 Identities=11% Similarity=0.065 Sum_probs=83.4
Q ss_pred ecCCCCceEE-EEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCC-------CceEEEEEeeCCcEEEEEccCc
Q 017553 136 TQPLKPSLVV-SASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS-------DIYRIASCGMDNTVKIWSMKEF 207 (369)
Q Consensus 136 ~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------~~~~l~~~~~d~~v~i~d~~~~ 207 (369)
.+.++.++|+ .|+....++-.|++.|+.+..+. -|..- -+.|.|. ....| .|-.+..|.-.|.|-.
T Consensus 474 lh~~dssli~~dg~~~~kLykmDIErGkvveeW~---~~ddv--vVqy~p~~kf~qmt~eqtl-vGlS~~svFrIDPR~~ 547 (776)
T COG5167 474 LHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWD---LKDDV--VVQYNPYFKFQQMTDEQTL-VGLSDYSVFRIDPRAR 547 (776)
T ss_pred eecCCcceEEecCCCcccceeeecccceeeeEee---cCCcc--eeecCCchhHHhcCccceE-EeecccceEEeccccc
Confidence 3333555544 45666778888999999999887 34443 4667662 12333 4445555655566542
Q ss_pred eeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeeeCcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccC
Q 017553 208 WTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV 287 (369)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 287 (369)
..... .............-..+.-...++++++..|.|++||--... .-..+++
T Consensus 548 gNKi~-----------------v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~r---------AKtalP~ 601 (776)
T COG5167 548 GNKIK-----------------VVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKR---------AKTALPG 601 (776)
T ss_pred CCcee-----------------eeeehhccccccccccccccCceEEEecCCCceeeehhhcch---------hhhcCcc
Confidence 10000 000001111111111111126699999999999999965433 2233444
Q ss_pred CCCCeeEEEEeecCCccEEEEecCCCeEEEEEcc
Q 017553 288 PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ 321 (369)
Q Consensus 288 ~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~ 321 (369)
-...|..+..+.+|+ ++++.+ ...+.+-|+.
T Consensus 602 lG~aIk~idvta~Gk--~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 602 LGDAIKHIDVTANGK--HILATC-KNYLLLTDVP 632 (776)
T ss_pred cccceeeeEeecCCc--EEEEee-cceEEEEecc
Confidence 456788889999997 444333 3467676654
No 461
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=91.78 E-value=8 Score=33.48 Aligned_cols=153 Identities=12% Similarity=0.035 Sum_probs=0.0
Q ss_pred CcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEE
Q 017553 33 KRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIR 111 (369)
Q Consensus 33 ~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~ 111 (369)
.+....+..++ ++.+++.+..+. ++-|| ........+.. .....+..+.+. ++|. +++++...+.+.
T Consensus 238 ~Gsf~~v~~~~----dG~~~~vg~~G~~~~s~d-~G~~~W~~~~~----~~~~~l~~v~~~--~dg~-l~l~g~~G~l~~ 305 (398)
T PLN00033 238 TGTFSTVNRSP----DGDYVAVSSRGNFYLTWE-PGQPYWQPHNR----ASARRIQNMGWR--ADGG-LWLLTRGGGLYV 305 (398)
T ss_pred ccceeeEEEcC----CCCEEEEECCccEEEecC-CCCcceEEecC----CCccceeeeeEc--CCCC-EEEEeCCceEEE
Q ss_pred EEEcCCccccceeeccccc-----eEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCC
Q 017553 112 VIDVSNEKLHKSFVGHGDS-----INEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSD 186 (369)
Q Consensus 112 vwd~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 186 (369)
--|-........+..-... +.++.|.+ ++..+++|.. |.+... ...|+.-........-....+.+.|. +
T Consensus 306 S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~-d~~~~a~G~~-G~v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~--~ 380 (398)
T PLN00033 306 SKGTGLTEEDFDFEEADIKSRGFGILDVGYRS-KKEAWAAGGS-GILLRS-TDGGKSWKRDKGADNIAANLYSVKFF--D 380 (398)
T ss_pred ecCCCCcccccceeecccCCCCcceEEEEEcC-CCcEEEEECC-CcEEEe-CCCCcceeEccccCCCCcceeEEEEc--C
Q ss_pred ceEEEEEeeCCcEEEE
Q 017553 187 IYRIASCGMDNTVKIW 202 (369)
Q Consensus 187 ~~~l~~~~~d~~v~i~ 202 (369)
.+.....+.+|.|.-|
T Consensus 381 ~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 381 DKKGFVLGNDGVLLRY 396 (398)
T ss_pred CCceEEEeCCcEEEEe
No 462
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.60 E-value=3.2 Score=40.64 Aligned_cols=160 Identities=6% Similarity=-0.006 Sum_probs=83.9
Q ss_pred ecCCeEEEEEcCCccccceeeccccceEEEEecCCCC-------ceEEEEeCCCcEEEEEccCCcEE---------EEee
Q 017553 105 GINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKP-------SLVVSASKDESVRLWNVQTGICI---------LIFA 168 (369)
Q Consensus 105 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~~l~s~~~dg~i~vwd~~~~~~~---------~~~~ 168 (369)
+.|..+.+|+.+++.....+.+-...|..+..-.-.. ++++.-..--.|.++-+.-.+.. ..+.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 4578999999999877777777666666665421122 22333333345666654322111 1111
Q ss_pred ccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeec-cCCCceeeee
Q 017553 169 GAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS-VHSNYVDCNR 247 (369)
Q Consensus 169 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~ 247 (369)
...-.|.++.... +|+.|++| .||.|+-.-.............-...... ........+..+. .+..+|..+.
T Consensus 176 ---~dg~~V~~I~~t~-nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s-~ls~lvPs~~~~~~~~~dpI~qi~ 249 (1311)
T KOG1900|consen 176 ---VDGVSVNCITYTE-NGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKS-VLSSLVPSLLSVPGSSKDPIRQIT 249 (1311)
T ss_pred ---cCCceEEEEEecc-CCcEEEee-cCCCEEEEEEeccCchhhcccccccCchh-HHHHhhhhhhcCCCCCCCcceeeE
Confidence 2355688888554 78766655 55644322222211111110000000000 0000001122233 5677899999
Q ss_pred ee--CcEEEEeecCCeEEEecCCCC
Q 017553 248 WL--GDFILSKSVDNEIVLWEPKMK 270 (369)
Q Consensus 248 ~~--~~~l~~~~~d~~i~i~d~~~~ 270 (369)
.+ -+.+.+-+..+.|.+||+...
T Consensus 250 ID~SR~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 250 IDNSRNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred eccccceeeeeccCceEEEEEccCC
Confidence 87 457888889999999999873
No 463
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=91.51 E-value=5.2 Score=30.79 Aligned_cols=123 Identities=13% Similarity=0.178 Sum_probs=65.4
Q ss_pred ceEEEEeCCCcEEEEEcc--CCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCC------cEEEE-EccCc---ee
Q 017553 142 SLVVSASKDESVRLWNVQ--TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN------TVKIW-SMKEF---WT 209 (369)
Q Consensus 142 ~~l~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~------~v~i~-d~~~~---~~ 209 (369)
+.|+.+...+.|.+|++. ..+....+. .-+.|..+.++. .|++++|--.+. .+|+| +.+.. ..
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~----Tv~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~ 103 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS----TVGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENS 103 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc----chhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhhcccCC
Confidence 444444556789999998 334556665 558899999998 889999874432 45554 22221 11
Q ss_pred eeeeeeeccCCCCC-CCCceeecceeee--ccCCCceeeeeeeCcEEEEeecCCeEEEecCCCCC
Q 017553 210 YVEKSFTWTDLPSK-FPTKYVQFPVFIA--SVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKE 271 (369)
Q Consensus 210 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 271 (369)
.....+........ ......+..+..+ ..++..|.|....|++++. .++.+.+|.+....
T Consensus 104 ~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg--~~~~l~lf~l~~~~ 166 (215)
T PF14761_consen 104 PVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVG--CGNKLVLFTLKYQT 166 (215)
T ss_pred cEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEE--cCCEEEEEEEEEEE
Confidence 11111111000111 1111111222222 2344455555556887775 45688999887654
No 464
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.27 E-value=5.4 Score=30.50 Aligned_cols=105 Identities=10% Similarity=-0.044 Sum_probs=60.0
Q ss_pred CCceEEEEeCC--CcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeec
Q 017553 140 KPSLVVSASKD--ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTW 217 (369)
Q Consensus 140 ~~~~l~s~~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~ 217 (369)
++.++.+.+.- ..|++||+.+|+.+...... ...+..=-....+..+..-.-.+|.-..+|.++.+...+.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~---~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~---- 127 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA---PDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRF---- 127 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecC---CccccccceeeccceEEEEEeccceeEEEChHHhhhhccc----
Confidence 45677776643 47999999999887765521 1111110011102333344455788888888884322111
Q ss_pred cCCCCCCCCceeecceeeeccCCCceeeeeeeCcEEEEeecCCeEEEecCCCCC
Q 017553 218 TDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKE 271 (369)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 271 (369)
..++.-..++.+++.++.+.....++.-|.++..
T Consensus 128 --------------------~y~GeGWgLt~d~~~LimsdGsatL~frdP~tfa 161 (262)
T COG3823 128 --------------------SYEGEGWGLTSDDKNLIMSDGSATLQFRDPKTFA 161 (262)
T ss_pred --------------------ccCCcceeeecCCcceEeeCCceEEEecCHHHhh
Confidence 1234445666666667776666778877776654
No 465
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=91.26 E-value=14 Score=35.28 Aligned_cols=214 Identities=11% Similarity=0.077 Sum_probs=108.7
Q ss_pred EEEEeecCCeEEEEEcCCccccce--------eeccccceEEEEec--CCCCceEEEEeC---CCcEEEEEccC--C---
Q 017553 100 FLVAGGINGIIRVIDVSNEKLHKS--------FVGHGDSINEIRTQ--PLKPSLVVSASK---DESVRLWNVQT--G--- 161 (369)
Q Consensus 100 ~l~~~~~dg~i~vwd~~~~~~~~~--------~~~~~~~v~~~~~~--~~~~~~l~s~~~---dg~i~vwd~~~--~--- 161 (369)
-+++-..+|.+++|=.+......+ +..-...|+..++. . +++.++.+.. .+.|++|.+.- +
T Consensus 64 A~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~-~g~~ili~t~s~~s~~l~~yrv~I~W~~~~ 142 (753)
T PF11635_consen 64 ACIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSD-NGKSILIATYSSLSKQLRFYRVQIDWNAKP 142 (753)
T ss_pred EEEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecC-CCCEEEEEEccccCCceEEEEEEEeccCcC
Confidence 566777789999997632221111 11233456655555 4 4544444444 48898886531 1
Q ss_pred ----c---EEEEeecc-----C--C-----------CCCcEEEEEecC------CCceEEEEEee----CCcEEEEEccC
Q 017553 162 ----I---CILIFAGA-----G--G-----------HRNEVLSVDFHP------SDIYRIASCGM----DNTVKIWSMKE 206 (369)
Q Consensus 162 ----~---~~~~~~~~-----~--~-----------~~~~v~~~~~~~------~~~~~l~~~~~----d~~v~i~d~~~ 206 (369)
. +...+... . . .-..++.+.|-+ .....+++.+. ...|.-|.++.
T Consensus 143 ~~~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~ 222 (753)
T PF11635_consen 143 QQIDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELRE 222 (753)
T ss_pred ccCCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEc
Confidence 0 11111100 0 0 112556676654 12344444432 33699999988
Q ss_pred ceeeeeeeeeccCCCCCC---CCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCC----C
Q 017553 207 FWTYVEKSFTWTDLPSKF---PTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGE----G 277 (369)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~----~ 277 (369)
....+-..+...+..... ..................|.++... +..++..-.||.|.++|..+.+..... .
T Consensus 223 ~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~ 302 (753)
T PF11635_consen 223 EQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGE 302 (753)
T ss_pred cCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccC
Confidence 554333333322211110 0011111111112234567777664 778999999999999999888654333 1
Q ss_pred ccceeeecc-----CC-CCCeeEEEEeecCCccEEEEecCCCeEE
Q 017553 278 TADILQKYP-----VP-ECDIWFIKFSCDFHYNAAAIGNREGKIF 316 (369)
Q Consensus 278 ~~~~~~~~~-----~~-~~~i~~~~~s~~~~~~~l~~~~~dg~i~ 316 (369)
....+..+. .+ ...+..++|||.+. .++.-..+|.+.
T Consensus 303 ~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c--~~v~~~~~~~~~ 345 (753)
T PF11635_consen 303 PPNTVTSLFQAGFHFPCIQPPLHVAFSPTMC--SLVQIDEDGKTK 345 (753)
T ss_pred CccccccccccccccccCCCCceEEECcccc--eEEEEecCCCce
Confidence 211111111 11 12445688999985 566666777755
No 466
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=91.19 E-value=6.8 Score=34.39 Aligned_cols=146 Identities=14% Similarity=0.132 Sum_probs=86.5
Q ss_pred CCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCC------CceEEEEeCCCcEEEEEccCC-cEEEEe
Q 017553 95 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLK------PSLVVSASKDESVRLWNVQTG-ICILIF 167 (369)
Q Consensus 95 ~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~l~s~~~dg~i~vwd~~~~-~~~~~~ 167 (369)
.+..-++..|+....++-.|++.|+.+..+.-|... -+.|.|.. ...-+.|-.+..|.-.|.+-. ..+...
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV 554 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee
Confidence 344424456677778888999999999999887664 57787731 122344555566666677643 333322
Q ss_pred eccCCCCCcEEEEEecC---CCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCcee
Q 017553 168 AGAGGHRNEVLSVDFHP---SDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD 244 (369)
Q Consensus 168 ~~~~~~~~~v~~~~~~~---~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 244 (369)
. ....++.-.|+. ....+++.++..|-|++||--. ......+++-...|.
T Consensus 555 e----sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig-----------------------~rAKtalP~lG~aIk 607 (776)
T COG5167 555 E----SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIG-----------------------KRAKTALPGLGDAIK 607 (776)
T ss_pred e----ehhccccccccccccccCceEEEecCCCceeeehhhc-----------------------chhhhcCccccccee
Confidence 2 222232222321 1456799999999999999655 111223344455555
Q ss_pred eeeee--CcEEEEeecCCeEEEecCCCC
Q 017553 245 CNRWL--GDFILSKSVDNEIVLWEPKMK 270 (369)
Q Consensus 245 ~~~~~--~~~l~~~~~d~~i~i~d~~~~ 270 (369)
.+... |+++++.+. ..+.+-|++-.
T Consensus 608 ~idvta~Gk~ilaTCk-~yllL~d~~ik 634 (776)
T COG5167 608 HIDVTANGKHILATCK-NYLLLTDVPIK 634 (776)
T ss_pred eeEeecCCcEEEEeec-ceEEEEecccc
Confidence 55554 777666554 46666666543
No 467
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=90.99 E-value=9.2 Score=32.66 Aligned_cols=156 Identities=13% Similarity=0.119 Sum_probs=83.2
Q ss_pred EEEEEeeccCCCccEEEEecCCcEEEEEecCCceeEEEeeeccCCcccceeEEEe--eecCCCccE-EEEeec-C---Ce
Q 017553 37 YAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSW--ACNVDGIPF-LVAGGI-N---GI 109 (369)
Q Consensus 37 ~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~g~~~-l~~~~~-d---g~ 109 (369)
.+|-.+|.++....+++|--..++.+|| ..|+.+..+.. +..+.+.. .+.-.|+.. |++++. + ..
T Consensus 57 PAIWvnp~dp~kSlIigTdK~~GL~VYd-L~Gk~lq~~~~-------Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~ 128 (381)
T PF02333_consen 57 PAIWVNPADPAKSLIIGTDKKGGLYVYD-LDGKELQSLPV-------GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNS 128 (381)
T ss_dssp EEEE--SS-GGG-EEEEEETTTEEEEEE-TTS-EEEEE-S-------S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-E
T ss_pred CcEecCCCCcccceEEEEeCCCCEEEEc-CCCcEEEeecC-------CCcceeeeecceecCCceEEEEEEecCcCCCCe
Confidence 4566677665433444444444499999 46666655531 22333332 232345533 344432 2 46
Q ss_pred EEEEEcCC--ccccceee-------ccccceEEEEe--cCCCCc-eEEEEeCCCcEEEEEcc---CC----cEEEEeecc
Q 017553 110 IRVIDVSN--EKLHKSFV-------GHGDSINEIRT--QPLKPS-LVVSASKDESVRLWNVQ---TG----ICILIFAGA 170 (369)
Q Consensus 110 i~vwd~~~--~~~~~~~~-------~~~~~v~~~~~--~~~~~~-~l~s~~~dg~i~vwd~~---~~----~~~~~~~~~ 170 (369)
|++|.+.. +. +..+. .....+..+|+ +|.++. +++....+|.+..|.+. .+ +.++.+.
T Consensus 129 l~~f~id~~~g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~-- 205 (381)
T PF02333_consen 129 LRLFRIDPDTGE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK-- 205 (381)
T ss_dssp EEEEEEETTTTE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--
T ss_pred EEEEEecCCCCc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec--
Confidence 99998753 32 22221 11234667776 343343 66677889999888875 22 3566665
Q ss_pred CCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccC
Q 017553 171 GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206 (369)
Q Consensus 171 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~ 206 (369)
-...+..+.... ....|+.+-.+.-|.-|+.+.
T Consensus 206 --~~sQ~EGCVVDD-e~g~LYvgEE~~GIW~y~Aep 238 (381)
T PF02333_consen 206 --VGSQPEGCVVDD-ETGRLYVGEEDVGIWRYDAEP 238 (381)
T ss_dssp ---SS-EEEEEEET-TTTEEEEEETTTEEEEEESSC
T ss_pred --CCCcceEEEEec-ccCCEEEecCccEEEEEecCC
Confidence 455788888886 666788888777677776654
No 468
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.95 E-value=11 Score=33.37 Aligned_cols=29 Identities=21% Similarity=0.139 Sum_probs=20.7
Q ss_pred CCcEEEEEecCCCceEEEEEeeCCcEEEEE
Q 017553 174 RNEVLSVDFHPSDIYRIASCGMDNTVKIWS 203 (369)
Q Consensus 174 ~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d 203 (369)
.-.|..+..++ .|..++-.|.+|.+.++=
T Consensus 103 ~feV~~vl~s~-~GS~VaL~G~~Gi~vMeL 131 (741)
T KOG4460|consen 103 LFEVYQVLLSP-TGSHVALIGIKGLMVMEL 131 (741)
T ss_pred eEEEEEEEecC-CCceEEEecCCeeEEEEc
Confidence 34567788888 777787788888665543
No 469
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.80 E-value=10 Score=37.40 Aligned_cols=34 Identities=26% Similarity=0.386 Sum_probs=30.2
Q ss_pred CCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 335 QSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 335 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
.+..+|..+.....-..|.+-+..|.|.+|++.+
T Consensus 240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 5567999999998888999999999999999875
No 470
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=90.52 E-value=2.4 Score=31.73 Aligned_cols=29 Identities=14% Similarity=0.166 Sum_probs=24.5
Q ss_pred ceEEEEecCCC------CEEEEeecCCeEEEEecC
Q 017553 339 PIRQTAMSYDG------STILSCCEDGAIWRWDAI 367 (369)
Q Consensus 339 ~v~~~~~s~~~------~~l~s~~~dg~i~vw~~~ 367 (369)
.|.+++|||-| -+||+.+.+|.|.||.-.
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 78999999954 488999999999999743
No 471
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=90.41 E-value=11 Score=32.45 Aligned_cols=63 Identities=11% Similarity=0.054 Sum_probs=37.9
Q ss_pred CCeeEEEEeecCCccEEEEecC------------------CCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCE
Q 017553 290 CDIWFIKFSCDFHYNAAAIGNR------------------EGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGST 351 (369)
Q Consensus 290 ~~i~~~~~s~~~~~~~l~~~~~------------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 351 (369)
.....++|.|++. .++..++. .|.|.-++...++. ..+. .++ .....++|+|+|++
T Consensus 124 ~~~~~l~~gpDG~-LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~---e~~a-~G~-rnp~Gl~~d~~G~l 197 (367)
T TIGR02604 124 HSLNSLAWGPDGW-LYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKL---RVVA-HGF-QNPYGHSVDSWGDV 197 (367)
T ss_pred ccccCceECCCCC-EEEecccCCCceeccCCCccCcccccCceEEEEecCCCeE---EEEe-cCc-CCCccceECCCCCE
Confidence 4467899999986 34544521 14566666665532 1222 133 34568999999998
Q ss_pred EEEeecC
Q 017553 352 ILSCCED 358 (369)
Q Consensus 352 l~s~~~d 358 (369)
+++-..+
T Consensus 198 ~~tdn~~ 204 (367)
T TIGR02604 198 FFCDNDD 204 (367)
T ss_pred EEEccCC
Confidence 8765433
No 472
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=90.20 E-value=9 Score=31.29 Aligned_cols=90 Identities=13% Similarity=0.199 Sum_probs=53.8
Q ss_pred EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEee------cCCeEEEEEcCCccccceeec-----cc
Q 017553 60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG------INGIIRVIDVSNEKLHKSFVG-----HG 128 (369)
Q Consensus 60 v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~------~dg~i~vwd~~~~~~~~~~~~-----~~ 128 (369)
|++||....+ ...+.. .-.+.|+.+.|. .+.+ +++.|. ....+..||+.+... ..+.+ -.
T Consensus 18 lC~yd~~~~q-W~~~g~----~i~G~V~~l~~~--~~~~-Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ip 88 (281)
T PF12768_consen 18 LCLYDTDNSQ-WSSPGN----GISGTVTDLQWA--SNNQ-LLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIP 88 (281)
T ss_pred EEEEECCCCE-eecCCC----CceEEEEEEEEe--cCCE-EEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCC
Confidence 9999965543 333322 356789999997 5555 777764 355688899876543 22222 24
Q ss_pred cceEEEEecCCCCc-eEEEEe-CCC--cEEEEEc
Q 017553 129 DSINEIRTQPLKPS-LVVSAS-KDE--SVRLWNV 158 (369)
Q Consensus 129 ~~v~~~~~~~~~~~-~l~s~~-~dg--~i~vwd~ 158 (369)
++|..+.+...+.. +.++|. .++ .|..||-
T Consensus 89 gpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dG 122 (281)
T PF12768_consen 89 GPVTALTFISNDGSNFWVAGRSANGSTFLMKYDG 122 (281)
T ss_pred CcEEEEEeeccCCceEEEeceecCCCceEEEEcC
Confidence 77888888654544 444443 333 4555653
No 473
>PLN02193 nitrile-specifier protein
Probab=90.11 E-value=13 Score=33.14 Aligned_cols=64 Identities=13% Similarity=0.137 Sum_probs=34.0
Q ss_pred CCceEEEEeCC-----CcEEEEEccCCcEEEEeeccC--CCCCcEEEEEecCCCceEEEEEeeCC-----cEEEEEccC
Q 017553 140 KPSLVVSASKD-----ESVRLWNVQTGICILIFAGAG--GHRNEVLSVDFHPSDIYRIASCGMDN-----TVKIWSMKE 206 (369)
Q Consensus 140 ~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~d~-----~v~i~d~~~ 206 (369)
++.+++.|+.+ ..+..+|+.+.+-.. +.... .....-.+++.. ++.+++.|+.++ .+..||+.+
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~-l~~~~~~P~~R~~h~~~~~--~~~iYv~GG~~~~~~~~~~~~yd~~t 303 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKL-LTPVEEGPTPRSFHSMAAD--EENVYVFGGVSATARLKTLDSYNIVD 303 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEE-cCcCCCCCCCccceEEEEE--CCEEEEECCCCCCCCcceEEEEECCC
Confidence 45677777755 358888988765433 22110 011111222222 567777777654 356677665
No 474
>PRK10115 protease 2; Provisional
Probab=90.01 E-value=17 Score=34.28 Aligned_cols=108 Identities=8% Similarity=0.004 Sum_probs=58.1
Q ss_pred eeecCCCccEEEEe-ec----CCeEEEEEcCCccccceeeccccceEEEEecCCCCc-eEEEEeCC-----CcEEEEEcc
Q 017553 91 WACNVDGIPFLVAG-GI----NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPS-LVVSASKD-----ESVRLWNVQ 159 (369)
Q Consensus 91 ~~~~~~g~~~l~~~-~~----dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~d-----g~i~vwd~~ 159 (369)
+.++|+|+ +|+.+ .. ...|++.|+.+++.+........ ..++|.+ +++ ++++...+ ..|+.+++.
T Consensus 132 ~~~Spdg~-~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~-D~~~~~y~~~~~~~~~~~~v~~h~lg 207 (686)
T PRK10115 132 MAITPDNT-IMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWAN-DSWTFYYVRKHPVTLLPYQVWRHTIG 207 (686)
T ss_pred EEECCCCC-EEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEee-CCCEEEEEEecCCCCCCCEEEEEECC
Confidence 44459999 55543 33 34588999988864332221222 4699999 555 44444322 367788888
Q ss_pred CC--cEEEEeeccCCCCCcEE-EEEecCCCceEEEEEee---CCcEEEEEccC
Q 017553 160 TG--ICILIFAGAGGHRNEVL-SVDFHPSDIYRIASCGM---DNTVKIWSMKE 206 (369)
Q Consensus 160 ~~--~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~---d~~v~i~d~~~ 206 (369)
++ +....+. ....... .+..+. ++.+++..+. ++.+.+++...
T Consensus 208 t~~~~d~lv~~---e~~~~~~~~~~~s~-d~~~l~i~~~~~~~~~~~l~~~~~ 256 (686)
T PRK10115 208 TPASQDELVYE---EKDDTFYVSLHKTT-SKHYVVIHLASATTSEVLLLDAEL 256 (686)
T ss_pred CChhHCeEEEe---eCCCCEEEEEEEcC-CCCEEEEEEECCccccEEEEECcC
Confidence 77 3333343 1222222 223333 5554444433 34688888543
No 475
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=89.72 E-value=2.2 Score=36.64 Aligned_cols=165 Identities=10% Similarity=0.050 Sum_probs=92.6
Q ss_pred cccCCcCeEEEEEeeccCCCccEEEEecCCcEEEEEecCCceeEE-EeeeccCCccccee-EEEeeecCCCccEEEEeec
Q 017553 29 LQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAA-LQSYVDEDKEESFY-TVSWACNVDGIPFLVAGGI 106 (369)
Q Consensus 29 ~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~~~~~-~~~~~~~~~~~~v~-~~~~~~~~~g~~~l~~~~~ 106 (369)
+..-...|..+-..| +|+.|..-++..+.|+++.+...... +-.-...+....|. .+..- ..|. -|.++..
T Consensus 216 L~~~~~~v~qllL~P----dg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL--~Gg~-SLLv~~~ 288 (733)
T COG4590 216 LSVPFSDVSQLLLTP----DGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLL--SGGF-SLLVVHE 288 (733)
T ss_pred cCCCccchHhhEECC----CCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHH--hCce-eEEEEcC
Confidence 444556677888888 68988888877788888765432111 11100000111121 11111 2344 6888889
Q ss_pred CCeEEEE-EcCCccc-----cceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEE
Q 017553 107 NGIIRVI-DVSNEKL-----HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSV 180 (369)
Q Consensus 107 dg~i~vw-d~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~ 180 (369)
||.|.-| |+..+.. ++.++-...++..+.-.. +.+-+++-+..|++.++.....+.+..-. --..+.-+
T Consensus 289 dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~~~lL~~~----~~~~~~~~ 363 (733)
T COG4590 289 DGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSEKLLLFER----AYQAPQLV 363 (733)
T ss_pred CCceeeeeeeecCCCCcceeeeccccCcccceeecccc-ccceEEEEcCCCceeeeecccCcceehhh----hhcCccee
Confidence 9988877 4433221 122221223333333222 44567777888888887755444433222 23356678
Q ss_pred EecCCCceEEEEEeeCCcEEEEEccCc
Q 017553 181 DFHPSDIYRIASCGMDNTVKIWSMKEF 207 (369)
Q Consensus 181 ~~~~~~~~~l~~~~~d~~v~i~d~~~~ 207 (369)
+++| .+.++++- ..|.++++.+++.
T Consensus 364 ~~Sp-~~~~Ll~e-~~gki~~~~l~Nr 388 (733)
T COG4590 364 AMSP-NQAYLLSE-DQGKIRLAQLENR 388 (733)
T ss_pred eeCc-ccchheee-cCCceEEEEecCC
Confidence 9999 77777654 3578999988873
No 476
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=89.69 E-value=3.6 Score=30.78 Aligned_cols=33 Identities=15% Similarity=0.262 Sum_probs=26.8
Q ss_pred CCcEEEEEecCC-----CceEEEEEeeCCcEEEEEccC
Q 017553 174 RNEVLSVDFHPS-----DIYRIASCGMDNTVKIWSMKE 206 (369)
Q Consensus 174 ~~~v~~~~~~~~-----~~~~l~~~~~d~~v~i~d~~~ 206 (369)
...+..++|+|. .+.+|++...++.|.+|....
T Consensus 85 ~~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 85 SSQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 347889999982 356889999999999998765
No 477
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=89.40 E-value=2.1 Score=22.75 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=21.8
Q ss_pred CCc-eEEEEeCCCcEEEEEccCCcEEEEee
Q 017553 140 KPS-LVVSASKDESVRLWNVQTGICILIFA 168 (369)
Q Consensus 140 ~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~ 168 (369)
+++ ++++...+++|.++|..+++.+..+.
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~ 31 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIP 31 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence 344 45555568899999999888888776
No 478
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=89.38 E-value=21 Score=34.30 Aligned_cols=180 Identities=9% Similarity=0.028 Sum_probs=103.6
Q ss_pred cCCcCeEEEEEe---eccCCCccEEEEecCCcEEEEEecCC---------------ceeEEEeeeccCCcccceeEEEee
Q 017553 31 EGKRPLYAVVFN---FIDSRYFNVFATVGGNRVTVYQCLEG---------------GVIAALQSYVDEDKEESFYTVSWA 92 (369)
Q Consensus 31 ~h~~~v~~~~~s---~~~~~~~~~la~~~~~~v~iw~~~~~---------------~~~~~~~~~~~~~~~~~v~~~~~~ 92 (369)
.-..+|..|+|. ..-.+...+|++-....+.|+...-. ..+..+.... ....+...++|+
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~--tgg~~~aDv~Fn 154 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSD--TGGFPHADVAFN 154 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhh--cCCCccceEEec
Confidence 457889999998 31111235788777777888882211 1222222111 122344445555
Q ss_pred ecCCCccEEEEeecCCeEEEEEcCCccc-----cceeeccc----------cceEEEEecCCCCceEEEEeCCCcEEEEE
Q 017553 93 CNVDGIPFLVAGGINGIIRVIDVSNEKL-----HKSFVGHG----------DSINEIRTQPLKPSLVVSASKDESVRLWN 157 (369)
Q Consensus 93 ~~~~g~~~l~~~~~dg~i~vwd~~~~~~-----~~~~~~~~----------~~v~~~~~~~~~~~~l~s~~~dg~i~vwd 157 (369)
|.....||.-...|...||++..... ......+. +.-..+.|.+ +.+.|+.++. ..+.++|
T Consensus 155 --P~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~-~~~~lLv~~r-~~l~~~d 230 (765)
T PF10214_consen 155 --PWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVS-DSNRLLVCNR-SKLMLID 230 (765)
T ss_pred --cCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecC-CCCEEEEEcC-CceEEEE
Confidence 76555799999999999999922110 11111111 2234788887 6666776666 5788999
Q ss_pred ccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeecc
Q 017553 158 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWT 218 (369)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~ 218 (369)
+++......+.. ......|.++.-+|.+..+++.-. ...|...++..........+.|+
T Consensus 231 ~~~~~~~~~l~~-~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~~~~~~~~llSwk 289 (765)
T PF10214_consen 231 FESNWQTEYLVT-AKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKSSSEKLTRLLSWK 289 (765)
T ss_pred CCCCCccchhcc-CCChhheeeEEecCCccceEEEEe-cCeEEEEEccCCCCCeeeeeecc
Confidence 988766432221 135678999998884333333332 36788888877433333333333
No 479
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=89.00 E-value=11 Score=30.43 Aligned_cols=166 Identities=11% Similarity=0.006 Sum_probs=86.3
Q ss_pred ceEEEEecCCCCceEEEEe-CCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEE-ccCc
Q 017553 130 SINEIRTQPLKPSLVVSAS-KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWS-MKEF 207 (369)
Q Consensus 130 ~v~~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d-~~~~ 207 (369)
.+.+.++++ ++..++... .++.-.+|-...+....... ....+..-.|++ ++...+....+...+++. ...+
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~----~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g 98 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGGPVRPVL----TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASG 98 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcCCCcceeec----cCCccccccccC-CCCEEEEEcCCCceEEEEecCCC
Confidence 688999999 666655544 33344444444444444432 223677788998 677666666666666664 2221
Q ss_pred eeeeeeeeeccCCCCCCCCceeecceeee-ccCCCceeeeeee--CcEEEEee---cCCeEEEecCCCCCCCCCCCccce
Q 017553 208 WTYVEKSFTWTDLPSKFPTKYVQFPVFIA-SVHSNYVDCNRWL--GDFILSKS---VDNEIVLWEPKMKEQSPGEGTADI 281 (369)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~--~~~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~ 281 (369)
.. .++... ..-...|..+.++ |..++... .++.|.+--+..............
T Consensus 99 ~~---------------------~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~ 157 (253)
T PF10647_consen 99 TG---------------------EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGP 157 (253)
T ss_pred cc---------------------eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccc
Confidence 10 011111 1111178888887 66665544 356777765543322101111112
Q ss_pred eeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEE-EEccCC
Q 017553 282 LQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFV-WELQSS 323 (369)
Q Consensus 282 ~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i-~d~~~~ 323 (369)
+.........+..+.|.++.. ..++....++.+.. .....+
T Consensus 158 ~~~~~~~~~~v~~v~W~~~~~-L~V~~~~~~~~~~~~v~~dG~ 199 (253)
T PF10647_consen 158 RRVAPPLLSDVTDVAWSDDST-LVVLGRSAGGPVVRLVSVDGG 199 (253)
T ss_pred eEecccccCcceeeeecCCCE-EEEEeCCCCCceeEEEEccCC
Confidence 222223346788999999986 23333344443444 444333
No 480
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=88.81 E-value=2.4 Score=38.65 Aligned_cols=69 Identities=19% Similarity=0.400 Sum_probs=41.9
Q ss_pred EEEEeecCCeEEEEEcCC----cccc-----------ceeec-----------cccceEEEEecC---CCCceEEEEeCC
Q 017553 100 FLVAGGINGIIRVIDVSN----EKLH-----------KSFVG-----------HGDSINEIRTQP---LKPSLVVSASKD 150 (369)
Q Consensus 100 ~l~~~~~dg~i~vwd~~~----~~~~-----------~~~~~-----------~~~~v~~~~~~~---~~~~~l~s~~~d 150 (369)
.++.+..||.+....... +... +.+.+ ....+..++.++ .+..++++.+.|
T Consensus 160 ~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~~D 239 (547)
T PF11715_consen 160 NLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLSRD 239 (547)
T ss_dssp BEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEETT
T ss_pred EEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEeCC
Confidence 677778888888877654 1110 01110 112344444443 256789999999
Q ss_pred CcEEEEEccCCcEEEEee
Q 017553 151 ESVRLWNVQTGICILIFA 168 (369)
Q Consensus 151 g~i~vwd~~~~~~~~~~~ 168 (369)
+.+|+||+.+++++....
T Consensus 240 ~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 240 HTLRIWSLETGQCLATID 257 (547)
T ss_dssp SEEEEEETTTTCEEEEEE
T ss_pred CeEEEEECCCCeEEEEec
Confidence 999999999999977654
No 481
>PRK13684 Ycf48-like protein; Provisional
Probab=87.67 E-value=16 Score=30.90 Aligned_cols=288 Identities=9% Similarity=0.031 Sum_probs=127.3
Q ss_pred cccceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCcEEEEEec-CCceeEEEeeeccCCcccceeEEEeeecCCC
Q 017553 19 KKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCL-EGGVIAALQSYVDEDKEESFYTVSWACNVDG 97 (369)
Q Consensus 19 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g 97 (369)
...+|+... + .-...+++|.|.. ..+-+|++..+. ||... .|+......... +.....+.++.+. ++
T Consensus 33 ~~~~W~~~~-~-~~~~~l~~v~F~d----~~~g~avG~~G~--il~T~DgG~tW~~~~~~~-~~~~~~l~~v~~~--~~- 100 (334)
T PRK13684 33 SSSPWQVID-L-PTEANLLDIAFTD----PNHGWLVGSNRT--LLETNDGGETWEERSLDL-PEENFRLISISFK--GD- 100 (334)
T ss_pred cCCCcEEEe-c-CCCCceEEEEEeC----CCcEEEEECCCE--EEEEcCCCCCceECccCC-cccccceeeeEEc--CC-
Confidence 344555443 2 3356899999985 356677775443 33333 333333322110 0112235556553 33
Q ss_pred ccEEEEeecCCeEEEEEcCCccccceee---ccc-cceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCC
Q 017553 98 IPFLVAGGINGIIRVIDVSNEKLHKSFV---GHG-DSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGH 173 (369)
Q Consensus 98 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~---~~~-~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 173 (369)
. .+++| ..|.|..- .+.++.-..+. ... .........+ ...+ .++..|.|.. ....|+.-..+.. .-
T Consensus 101 ~-~~~~G-~~g~i~~S-~DgG~tW~~~~~~~~~~~~~~~i~~~~~--~~~~-~~g~~G~i~~-S~DgG~tW~~~~~--~~ 171 (334)
T PRK13684 101 E-GWIVG-QPSLLLHT-TDGGKNWTRIPLSEKLPGSPYLITALGP--GTAE-MATNVGAIYR-TTDGGKNWEALVE--DA 171 (334)
T ss_pred c-EEEeC-CCceEEEE-CCCCCCCeEccCCcCCCCCceEEEEECC--Ccce-eeeccceEEE-ECCCCCCceeCcC--CC
Confidence 2 34444 45543332 12232222211 011 1122222222 2233 3344454432 2223443333332 23
Q ss_pred CCcEEEEEecCCCceEEEEEeeCCcEEE-EEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee-Cc
Q 017553 174 RNEVLSVDFHPSDIYRIASCGMDNTVKI-WSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GD 251 (369)
Q Consensus 174 ~~~v~~~~~~~~~~~~l~~~~~d~~v~i-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~ 251 (369)
...+.++.+.| ++.+++++ ..|.+.. +|-.. +.. ......-...+.++.+. +.
T Consensus 172 ~g~~~~i~~~~-~g~~v~~g-~~G~i~~s~~~gg-~tW----------------------~~~~~~~~~~l~~i~~~~~g 226 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYVAVS-SRGNFYSTWEPGQ-TAW----------------------TPHQRNSSRRLQSMGFQPDG 226 (334)
T ss_pred cceEEEEEECC-CCeEEEEe-CCceEEEEcCCCC-CeE----------------------EEeeCCCcccceeeeEcCCC
Confidence 55788999998 76655544 4565442 12111 000 00011223455666664 33
Q ss_pred EEEEeecCCeEEEecCCCCCCCCCCCccceeeec-cCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEE
Q 017553 252 FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY-PVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR 330 (369)
Q Consensus 252 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 330 (369)
.++..+..|.+++=....+.. ...+... ......+..+.+.+++. .+ .++.+|.+.. ....++ .-..
T Consensus 227 ~~~~vg~~G~~~~~s~d~G~s------W~~~~~~~~~~~~~l~~v~~~~~~~--~~-~~G~~G~v~~-S~d~G~--tW~~ 294 (334)
T PRK13684 227 NLWMLARGGQIRFNDPDDLES------WSKPIIPEITNGYGYLDLAYRTPGE--IW-AGGGNGTLLV-SKDGGK--TWEK 294 (334)
T ss_pred CEEEEecCCEEEEccCCCCCc------cccccCCccccccceeeEEEcCCCC--EE-EEcCCCeEEE-eCCCCC--CCeE
Confidence 334445667665322232221 0011100 01123467788888764 44 4556676553 444432 1111
Q ss_pred eec-CCCccceEEEEecCCCCEEEEeecCCeEEEEe
Q 017553 331 LSH-AQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 365 (369)
Q Consensus 331 ~~~-~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~ 365 (369)
... ..-......+.|..+++.+++ +..|.|.-|+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~-G~~G~il~~~ 329 (334)
T PRK13684 295 DPVGEEVPSNFYKIVFLDPEKGFVL-GQRGVLLRYV 329 (334)
T ss_pred CCcCCCCCcceEEEEEeCCCceEEE-CCCceEEEec
Confidence 110 122245778888877777664 4678887765
No 482
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=87.13 E-value=18 Score=31.04 Aligned_cols=226 Identities=10% Similarity=-0.000 Sum_probs=0.0
Q ss_pred CCccEEEEeecCCeEEEEEcCCccccceeeccc--cceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCC
Q 017553 96 DGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHG--DSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGH 173 (369)
Q Consensus 96 ~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 173 (369)
+|+ ++++..+|.|.-.|..+++.+.....-. ..+..-.+.. +++ ++.++.++.+..+|..+|+.+.... ..
T Consensus 68 dg~--v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~---~~ 140 (370)
T COG1520 68 DGT--VYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRN---VG 140 (370)
T ss_pred CCe--EEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEe---cC
Q ss_pred C-CcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeecc----CCCceeeeee
Q 017553 174 R-NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV----HSNYVDCNRW 248 (369)
Q Consensus 174 ~-~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~ 248 (369)
. ..+..-... ....+..++.++.+...|..+ ......... ..........
T Consensus 141 ~~~~~~~~~v~--~~~~v~~~s~~g~~~al~~~t-----------------------G~~~W~~~~~~~~~~~~~~~~~~ 195 (370)
T COG1520 141 GSPYYASPPVV--GDGTVYVGTDDGHLYALNADT-----------------------GTLKWTYETPAPLSLSIYGSPAI 195 (370)
T ss_pred CCeEEecCcEE--cCcEEEEecCCCeEEEEEccC-----------------------CcEEEEEecCCccccccccCcee
Q ss_pred eCcEEEEeec--CCeEEEecCCCCCCCCCCCccceeeeccC-CCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCc
Q 017553 249 LGDFILSKSV--DNEIVLWEPKMKEQSPGEGTADILQKYPV-PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP 325 (369)
Q Consensus 249 ~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~ 325 (369)
....++.+.. ++.+.-.|..++...-.......+..... ....+..-..--++ -+..++.++.+...|..+++.
T Consensus 196 ~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~---~~~~~~~~g~~~~l~~~~G~~ 272 (370)
T COG1520 196 ASGTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDG---GVYAGSYGGKLLCLDADTGEL 272 (370)
T ss_pred ecceEEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECC---cEEEEecCCeEEEEEcCCCce
Q ss_pred eeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEe
Q 017553 326 VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 365 (369)
Q Consensus 326 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~ 365 (369)
.-...........++......- .||.++++.
T Consensus 273 ~W~~~~~~~~~~~~~~~~~~~~---------~dG~v~~~~ 303 (370)
T COG1520 273 IWSFPAGGSVQGSGLYTTPVAG---------ADGKVYIGF 303 (370)
T ss_pred EEEEecccEeccCCeeEEeecC---------CCccEEEEE
No 483
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=87.11 E-value=29 Score=33.26 Aligned_cols=71 Identities=17% Similarity=0.035 Sum_probs=47.1
Q ss_pred CCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEE-----------EeecC----CCccceEEEEecCCCCEEEE
Q 017553 290 CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA-----------RLSHA----QSKSPIRQTAMSYDGSTILS 354 (369)
Q Consensus 290 ~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-----------~~~~~----~~~~~v~~~~~s~~~~~l~s 354 (369)
..|.++....-+. +++....||+|.++|-.+.+..... .+... ....++..++|||.+..++.
T Consensus 260 ~~V~si~~~~~~~--~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~ 337 (753)
T PF11635_consen 260 KRVVSITSPELDI--VVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQ 337 (753)
T ss_pred CeEEEEEecccCc--EEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEE
Confidence 4466666655553 8889999999999998775322111 11100 11224456899999999999
Q ss_pred eecCCeEE
Q 017553 355 CCEDGAIW 362 (369)
Q Consensus 355 ~~~dg~i~ 362 (369)
-..+|.+.
T Consensus 338 ~~~~~~~~ 345 (753)
T PF11635_consen 338 IDEDGKTK 345 (753)
T ss_pred EecCCCce
Confidence 99998854
No 484
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=86.89 E-value=2 Score=21.34 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=21.6
Q ss_pred ceEEEEeCCCcEEEEEccCCcEEEEe
Q 017553 142 SLVVSASKDESVRLWNVQTGICILIF 167 (369)
Q Consensus 142 ~~l~s~~~dg~i~vwd~~~~~~~~~~ 167 (369)
..++.++.+|.+..+|.++|+.+..+
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 36778888999999999999887653
No 485
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=86.85 E-value=21 Score=31.39 Aligned_cols=31 Identities=29% Similarity=0.419 Sum_probs=25.1
Q ss_pred cceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 338 SPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 338 ~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
..|.++...+..+.|++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3499999999889999999999999999863
No 486
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=86.82 E-value=22 Score=31.48 Aligned_cols=33 Identities=9% Similarity=-0.030 Sum_probs=24.7
Q ss_pred CCCcEEEEEecCCCceEEEEEeeCCcEEEEEccC
Q 017553 173 HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206 (369)
Q Consensus 173 ~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~ 206 (369)
.-.....|+|.| ++++|++--..|.|++++...
T Consensus 28 GL~~Pw~maflP-DG~llVtER~~G~I~~v~~~~ 60 (454)
T TIGR03606 28 GLNKPWALLWGP-DNQLWVTERATGKILRVNPET 60 (454)
T ss_pred CCCCceEEEEcC-CCeEEEEEecCCEEEEEeCCC
Confidence 344568899999 888777665469999987654
No 487
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=86.49 E-value=32 Score=33.11 Aligned_cols=80 Identities=16% Similarity=0.231 Sum_probs=50.0
Q ss_pred ccccceEEEEec---CC--CCceEEEEeCCCcEEEEEccCC---------------cEEEEeeccCCCCCcEEEEEecCC
Q 017553 126 GHGDSINEIRTQ---PL--KPSLVVSASKDESVRLWNVQTG---------------ICILIFAGAGGHRNEVLSVDFHPS 185 (369)
Q Consensus 126 ~~~~~v~~~~~~---~~--~~~~l~s~~~dg~i~vwd~~~~---------------~~~~~~~~~~~~~~~v~~~~~~~~ 185 (369)
.-..+|..|+|. .. ....++..-....+.|+...-. .++..+.....-..+..+++|+|.
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 345688888887 21 1212344445567777772211 223333311112336678999998
Q ss_pred CceEEEEEeeCCcEEEEEcc
Q 017553 186 DIYRIASCGMDNTVKIWSMK 205 (369)
Q Consensus 186 ~~~~l~~~~~d~~v~i~d~~ 205 (369)
+...||.....|...||++.
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~ 176 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIK 176 (765)
T ss_pred ccceEEEEeccCcEEEEEec
Confidence 88899999999999999993
No 488
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=85.73 E-value=24 Score=31.02 Aligned_cols=31 Identities=13% Similarity=0.420 Sum_probs=24.6
Q ss_pred CcEEEEEecCCCceEEEEEeeCCcEEEEEccC
Q 017553 175 NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206 (369)
Q Consensus 175 ~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~ 206 (369)
..|.+++..+ ..+.+++...+|.|.+|++..
T Consensus 190 ~~I~~v~~d~-~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDP-SRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEET-TTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecC-CcCEEEEEeCCCcEEEEEEeC
Confidence 3488999988 668999999999999999986
No 489
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=85.36 E-value=4.7 Score=36.84 Aligned_cols=64 Identities=17% Similarity=0.227 Sum_probs=37.0
Q ss_pred EEEEecCCCeEEEEEccC---CCceeEEEee-cC------------------CCccceEEEEecC----CCCEEEEeecC
Q 017553 305 AAAIGNREGKIFVWELQS---SPPVLIARLS-HA------------------QSKSPIRQTAMSY----DGSTILSCCED 358 (369)
Q Consensus 305 ~l~~~~~dg~i~i~d~~~---~~~~~~~~~~-~~------------------~~~~~v~~~~~s~----~~~~l~s~~~d 358 (369)
.++.+..||.+....... .......... .. .....+..+++++ +..+|++.+.|
T Consensus 160 ~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~~D 239 (547)
T PF11715_consen 160 NLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLSRD 239 (547)
T ss_dssp BEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEETT
T ss_pred EEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEeCC
Confidence 677778888888887765 1111111111 00 0123456666666 67899999999
Q ss_pred CeEEEEecCC
Q 017553 359 GAIWRWDAIP 368 (369)
Q Consensus 359 g~i~vw~~~~ 368 (369)
+.+|+||+.+
T Consensus 240 ~~LRiW~l~t 249 (547)
T PF11715_consen 240 HTLRIWSLET 249 (547)
T ss_dssp SEEEEEETTT
T ss_pred CeEEEEECCC
Confidence 9999999875
No 490
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=85.19 E-value=3.2 Score=21.66 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=23.1
Q ss_pred eEEEEeCCCcEEEEEccCCcEEEEeec
Q 017553 143 LVVSASKDESVRLWNVQTGICILIFAG 169 (369)
Q Consensus 143 ~l~s~~~dg~i~vwd~~~~~~~~~~~~ 169 (369)
.++.++.+|.|.-.|.++|+.+..++.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 456669999999999999999998873
No 491
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=84.86 E-value=21 Score=29.65 Aligned_cols=232 Identities=11% Similarity=-0.023 Sum_probs=0.0
Q ss_pred CCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcE------------
Q 017553 96 DGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC------------ 163 (369)
Q Consensus 96 ~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~------------ 163 (369)
+++ +|+.|+++| +.+.++......-.--.+...|+++...+..+-+++.++....++++++..-..
T Consensus 12 ~~~-~lL~GTe~G-ly~~~~~~~~~~~~kl~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~ 89 (302)
T smart00036 12 DGK-WLLVGTEEG-LYVLNISDQPGTLEKLIGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVI 89 (302)
T ss_pred CCc-EEEEEeCCc-eEEEEcccCCCCeEEecCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccc
Q ss_pred ----EEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccC
Q 017553 164 ----ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH 239 (369)
Q Consensus 164 ----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (369)
...+. |................++++....+|.++.... ..........
T Consensus 90 ~~~~~~~~~----~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~-----------------------~~~~f~~~k~ 142 (302)
T smart00036 90 RKNVLTKIP----DTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYN-----------------------PLKKFKLFKS 142 (302)
T ss_pred cccceEeCC----cCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccC-----------------------hhhhhhhhcc
Q ss_pred --------CCceeeeeee----CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEE
Q 017553 240 --------SNYVDCNRWL----GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAA 307 (369)
Q Consensus 240 --------~~~v~~~~~~----~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~ 307 (369)
..++..+... ...++.|+..+...++++...-................. .++....+..+. +|+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~-~p~~i~~l~~~e---~Ll 218 (302)
T smart00036 143 KFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSL-KPISVVQVPRDE---FLL 218 (302)
T ss_pred cccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeeccccccccccccccccccc-CceEEEEECCCe---EEE
Q ss_pred EecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 308 IGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 308 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
+.|....+.|....+......+... ..+.++++. ..+|+.-+.++ |.|+++.+
T Consensus 219 --c~~~~~v~Vn~~G~~~~r~~~l~w~---~~p~~~~~~--~pyll~~~~~~-ievr~l~~ 271 (302)
T smart00036 219 --CYDEFGVFVNLYGKRRSRNPILHWE---FMPESFAYH--SPYLLAFHDNG-IEIRSIKT 271 (302)
T ss_pred --EECcEEEEEeCCCCccccceEEEcC---CcccEEEEE--CCEEEEEcCCc-EEEEECCC
No 492
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=84.77 E-value=23 Score=30.04 Aligned_cols=43 Identities=7% Similarity=-0.139 Sum_probs=21.3
Q ss_pred CcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeC
Q 017553 151 ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD 196 (369)
Q Consensus 151 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 196 (369)
..+..||..+++-... ..+......-.+++.. ++++++.|+.+
T Consensus 168 ~~v~~YDp~t~~W~~~-~~~p~~~r~~~~~~~~--~~~iyv~GG~~ 210 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNL-GENPFLGTAGSAIVHK--GNKLLLINGEI 210 (346)
T ss_pred ceEEEEECCCCceeEC-ccCCCCcCCCceEEEE--CCEEEEEeeee
Confidence 4688889877654332 2111001111233333 66777877754
No 493
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=84.61 E-value=4 Score=21.28 Aligned_cols=28 Identities=21% Similarity=0.059 Sum_probs=17.5
Q ss_pred CCeeEEEEeecCCccEEEEecCC--CeEEEE
Q 017553 290 CDIWFIKFSCDFHYNAAAIGNRE--GKIFVW 318 (369)
Q Consensus 290 ~~i~~~~~s~~~~~~~l~~~~~d--g~i~i~ 318 (369)
..-....|||||+ .++.++..+ |.-.||
T Consensus 9 ~~~~~p~~SpDGk-~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 9 GDDGSPAWSPDGK-YIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSEEEEEE-TTSS-EEEEEEECT--SSEEEE
T ss_pred ccccCEEEecCCC-EEEEEecCCCCCCcCEE
Confidence 4456789999998 344555555 666555
No 494
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=84.28 E-value=24 Score=29.80 Aligned_cols=106 Identities=19% Similarity=0.228 Sum_probs=54.7
Q ss_pred eEEEeeecCCCccEEEEeecCCeEEEEEcCCccc---ccee----eccccceEEEEecCC---CCceEEEEeCC------
Q 017553 87 YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL---HKSF----VGHGDSINEIRTQPL---KPSLVVSASKD------ 150 (369)
Q Consensus 87 ~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~---~~~~----~~~~~~v~~~~~~~~---~~~~l~s~~~d------ 150 (369)
..++|. |+|+ +++ +...|.|++++ .++.. +..+ .........++++|. ++.+.++.+..
T Consensus 5 ~~~a~~--pdG~-l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~ 79 (331)
T PF07995_consen 5 RSMAFL--PDGR-LLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD 79 (331)
T ss_dssp EEEEEE--TTSC-EEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred eEEEEe--CCCc-EEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence 346777 9987 544 56699999999 44433 2222 223457789999992 23333333321
Q ss_pred --CcEEEEEccCC-------cEEE-EeeccCCCCCcEEEEEecCCCceEEEEEeeCCc
Q 017553 151 --ESVRLWNVQTG-------ICIL-IFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNT 198 (369)
Q Consensus 151 --g~i~vwd~~~~-------~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 198 (369)
..|.-|....+ +.+. .+.........-..|.|.| ++.++++.+..+.
T Consensus 80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G~~~~ 136 (331)
T PF07995_consen 80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVGDGGN 136 (331)
T ss_dssp EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB-TTT
T ss_pred cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeCCCCC
Confidence 23444544433 1111 1111011233456799999 7777777766544
No 495
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=83.57 E-value=28 Score=30.03 Aligned_cols=41 Identities=10% Similarity=-0.172 Sum_probs=20.4
Q ss_pred cEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEee
Q 017553 152 SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM 195 (369)
Q Consensus 152 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 195 (369)
.+.+||..+++-... .........-.++... ++++++.|+.
T Consensus 190 ~v~~YD~~t~~W~~~-~~~p~~~~~~~a~v~~--~~~iYv~GG~ 230 (376)
T PRK14131 190 EVLSYDPSTNQWKNA-GESPFLGTAGSAVVIK--GNKLWLINGE 230 (376)
T ss_pred eEEEEECCCCeeeEC-CcCCCCCCCcceEEEE--CCEEEEEeee
Confidence 588899877654332 1111111112234333 5677777764
No 496
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=83.25 E-value=2.9 Score=21.84 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=22.4
Q ss_pred EEEEeecCCeEEEEEcCCccccceeec
Q 017553 100 FLVAGGINGIIRVIDVSNEKLHKSFVG 126 (369)
Q Consensus 100 ~l~~~~~dg~i~vwd~~~~~~~~~~~~ 126 (369)
.++.++.+|.|+-.|.++|+.+..+..
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 466679999999999999998877763
No 497
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=83.21 E-value=30 Score=32.73 Aligned_cols=141 Identities=14% Similarity=0.079 Sum_probs=82.9
Q ss_pred EEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEE--------EEcCCcccc
Q 017553 51 VFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRV--------IDVSNEKLH 121 (369)
Q Consensus 51 ~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~v--------wd~~~~~~~ 121 (369)
....++..+ +.|+....+.....+..... .....+.++.++ + + -+..|.-||++-. ||.+ +.
T Consensus 549 Tic~gtq~ssisissss~~s~ke~~~~~~s-pe~~~v~~l~~s--s-~--Slgagl~dgt~a~y~rap~gSwd~e---p~ 619 (925)
T KOG3522|consen 549 TICLGTQTSSISISSSSLDSIKEVTSEPPS-PEHESVKLLLFS--S-G--SLGAGLIDGTLAVYGRAPSGSWDGE---PN 619 (925)
T ss_pred cccccCccceeEEeeccCCcccceeccCCC-Cchhhhhhhhcc--c-c--ccccCccCCccccccCCCCCCCCCC---Cc
Confidence 355566666 88888664444444443333 233445445443 2 1 3555555555544 4432 23
Q ss_pred ceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEE
Q 017553 122 KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKI 201 (369)
Q Consensus 122 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i 201 (369)
..+..-..+|...++.. + ++-++.+|.|.++...+....+.+.....|...|+++.+. +...+++-.....+++
T Consensus 620 ~~~~~g~lPvrsla~~e-d---~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~--~~gVwvafasG~~~rl 693 (925)
T KOG3522|consen 620 ISIPTGSLPVRSLAFQE-D---FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYL--DNGVWVAFASGDEERL 693 (925)
T ss_pred cccccCCccccchhhhh-c---eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEee--CCceEEEEcCCCEEEE
Confidence 33333456788888765 2 5667888999999998877666666444567789999988 4444444443445666
Q ss_pred EEccC
Q 017553 202 WSMKE 206 (369)
Q Consensus 202 ~d~~~ 206 (369)
++..+
T Consensus 694 fhtet 698 (925)
T KOG3522|consen 694 FHTET 698 (925)
T ss_pred ecccc
Confidence 65555
No 498
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=83.17 E-value=34 Score=30.70 Aligned_cols=159 Identities=18% Similarity=0.139 Sum_probs=73.7
Q ss_pred eEEEEEeeccCCCccEEEEe---cCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEE
Q 017553 36 LYAVVFNFIDSRYFNVFATV---GGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIR 111 (369)
Q Consensus 36 v~~~~~s~~~~~~~~~la~~---~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~ 111 (369)
+..+.-.+....++-++++. .... ..++| .+|.....+.......+ . +...++|. +++... ..++
T Consensus 102 ~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~iD-~~G~Vrw~~~~~~~~~~--~-----~~~l~nG~-ll~~~~--~~~~ 170 (477)
T PF05935_consen 102 VTVLKTSDEEMEDGLYFVNGNDWDSSSYTYLID-NNGDVRWYLPLDSGSDN--S-----FKQLPNGN-LLIGSG--NRLY 170 (477)
T ss_dssp EEEEE-E-TT-TT-EEEEEETT--BEEEEEEEE-TTS-EEEEE-GGGT--S--S-----EEE-TTS--EEEEEB--TEEE
T ss_pred eeEeeccccccCCcEEEEeCCCCCCCceEEEEC-CCccEEEEEccCccccc--e-----eeEcCCCC-EEEecC--CceE
Confidence 34444344333344455555 1222 77777 56665554443211111 1 33338887 554433 7888
Q ss_pred EEEcCCccccceeecccc---ceEEEEecCCCCceEEEEeC-------------CCcEEEEEccCCcEEEEeeccC----
Q 017553 112 VIDVSNEKLHKSFVGHGD---SINEIRTQPLKPSLVVSASK-------------DESVRLWNVQTGICILIFAGAG---- 171 (369)
Q Consensus 112 vwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~s~~~-------------dg~i~vwd~~~~~~~~~~~~~~---- 171 (369)
.+|+. |+.+.....-.. .=..+...| ++++|+.+.. .-.|..+| .+|+.+..+....
T Consensus 171 e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~-nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~ 247 (477)
T PF05935_consen 171 EIDLL-GKVIWEYDLPGGYYDFHHDIDELP-NGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDP 247 (477)
T ss_dssp EE-TT---EEEEEE--TTEE-B-S-EEE-T-TS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-T
T ss_pred EEcCC-CCEEEeeecCCcccccccccEECC-CCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCc
Confidence 88874 655444432111 124566778 7788777761 12355666 7777776654211
Q ss_pred ------------------CC--CCcEEEEEecCCCceEEEEEeeCCcEEEEEccCce
Q 017553 172 ------------------GH--RNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 208 (369)
Q Consensus 172 ------------------~~--~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~ 208 (369)
.. --.++++.+.+.++.+++++-.-..|...|.++++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~ 304 (477)
T PF05935_consen 248 YRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGK 304 (477)
T ss_dssp T--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-
T ss_pred ccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCc
Confidence 00 02478999998666766666555578888866643
No 499
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=83.12 E-value=8.5 Score=24.79 Aligned_cols=51 Identities=12% Similarity=0.057 Sum_probs=33.4
Q ss_pred CCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEee-cCCeEEEEecCCC
Q 017553 312 EGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCC-EDGAIWRWDAIPT 369 (369)
Q Consensus 312 dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~vw~~~~~ 369 (369)
-+.|..||.... . ... ..-...+.+.++|++++|..++ ..+.|++|+...+
T Consensus 35 ~~~Vvyyd~~~~--~---~va--~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~~ 86 (86)
T PF01731_consen 35 WGNVVYYDGKEV--K---VVA--SGFSFANGIAISPDKKYLYVASSLAHSIHVYKRHKD 86 (86)
T ss_pred CceEEEEeCCEe--E---Eee--ccCCCCceEEEcCCCCEEEEEeccCCeEEEEEecCC
Confidence 455667775432 1 111 1124567899999999887766 5678999998753
No 500
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=82.91 E-value=42 Score=31.93 Aligned_cols=53 Identities=15% Similarity=0.343 Sum_probs=32.4
Q ss_pred EEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeE
Q 017553 305 AAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAI 361 (369)
Q Consensus 305 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 361 (369)
.|+.-+.-|.|+.|+-.+.. .....+.. ...-.|..++|..+ -++.++.||..
T Consensus 400 kll~lte~g~Vy~w~s~ns~-~~~c~ftp-~r~~~isdIa~~~N--~~~~~t~dGc~ 452 (1267)
T KOG0783|consen 400 KLLVLTELGEVYEWDSKNST-RTSCKFTP-LRIFEISDIAWTAN--SLILCTRDGCW 452 (1267)
T ss_pred heeeeccCCeEEEEecCCCc-eeeeeccc-ceeeehhhhhhccc--eEEEEecCcce
Confidence 56666778999999976653 22333321 11235667888764 45556778843
Done!