Query 017553
Match_columns 369
No_of_seqs 706 out of 1537
Neff 12.1
Searched_HMMs 29240
Date Mon Mar 25 16:17:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017553.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017553hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 1.6E-52 5.3E-57 359.7 37.1 287 26-367 101-410 (410)
2 3ow8_A WD repeat-containing pr 100.0 1.5E-51 5.3E-56 341.7 40.7 294 25-367 24-320 (321)
3 1got_B GT-beta; complex (GTP-b 100.0 1.1E-50 3.7E-55 340.0 41.2 289 21-365 43-340 (340)
4 2ynn_A Coatomer subunit beta'; 100.0 1.1E-50 3.6E-55 334.7 39.4 292 23-368 3-302 (304)
5 3iz6_a 40S ribosomal protein R 100.0 8.2E-51 2.8E-55 345.8 34.5 302 20-368 53-375 (380)
6 2pbi_B Guanine nucleotide-bind 100.0 2E-49 7E-54 333.7 41.5 290 22-365 53-354 (354)
7 4gqb_B Methylosome protein 50; 100.0 5.1E-50 1.7E-54 334.9 35.0 288 30-368 27-331 (344)
8 3fm0_A Protein CIAO1; WDR39,SG 100.0 5.9E-49 2E-53 330.0 41.6 314 21-368 3-335 (345)
9 4g56_B MGC81050 protein; prote 100.0 3.8E-50 1.3E-54 338.4 32.7 290 30-368 39-343 (357)
10 3frx_A Guanine nucleotide-bind 100.0 8.7E-49 3E-53 325.4 39.2 295 20-368 4-317 (319)
11 2hes_X YDR267CP; beta-propelle 100.0 3.5E-48 1.2E-52 323.3 37.9 306 22-368 3-328 (330)
12 4ery_A WD repeat-containing pr 100.0 1.4E-47 4.7E-52 317.8 41.1 294 20-367 10-311 (312)
13 3k26_A Polycomb protein EED; W 100.0 1.9E-48 6.5E-53 330.3 36.5 336 29-368 14-366 (366)
14 2xzm_R RACK1; ribosome, transl 100.0 1.1E-47 3.6E-52 322.4 38.5 298 21-368 9-340 (343)
15 1erj_A Transcriptional repress 100.0 2.2E-47 7.5E-52 326.2 40.2 304 31-368 62-389 (393)
16 1nr0_A Actin interacting prote 100.0 1.2E-46 4.2E-51 339.2 38.4 318 4-367 163-610 (611)
17 4aow_A Guanine nucleotide-bind 100.0 8.2E-46 2.8E-50 311.0 39.8 303 19-368 24-337 (340)
18 1nr0_A Actin interacting prote 100.0 2.7E-46 9.3E-51 336.9 36.2 317 26-368 140-567 (611)
19 3dm0_A Maltose-binding peripla 100.0 3.4E-45 1.1E-49 335.0 38.1 295 22-367 371-692 (694)
20 2ymu_A WD-40 repeat protein; u 100.0 1.2E-44 4E-49 325.4 40.4 281 24-365 294-577 (577)
21 2ynn_A Coatomer subunit beta'; 100.0 2E-44 6.8E-49 297.2 36.1 246 81-368 11-259 (304)
22 1gxr_A ESG1, transducin-like e 100.0 1.9E-43 6.6E-48 296.1 41.3 285 29-367 47-336 (337)
23 3ow8_A WD repeat-containing pr 100.0 2E-44 6.7E-49 299.1 33.9 267 4-321 51-320 (321)
24 1sq9_A Antiviral protein SKI8; 100.0 2.5E-44 8.4E-49 308.5 35.2 293 23-368 6-395 (397)
25 3zwl_B Eukaryotic translation 100.0 3.6E-43 1.2E-47 298.1 40.5 292 21-368 20-346 (369)
26 3ei3_B DNA damage-binding prot 100.0 1.1E-43 3.7E-48 303.0 37.2 305 21-369 61-383 (383)
27 3odt_A Protein DOA1; ubiquitin 100.0 6.4E-43 2.2E-47 289.9 40.5 286 20-368 5-296 (313)
28 3i2n_A WD repeat-containing pr 100.0 6.2E-44 2.1E-48 301.5 34.2 300 25-368 10-353 (357)
29 1vyh_C Platelet-activating fac 100.0 1.2E-43 4E-48 304.6 33.7 244 81-368 106-369 (410)
30 4gqb_B Methylosome protein 50; 100.0 1.2E-43 4E-48 296.5 32.8 249 31-323 80-332 (344)
31 1k8k_C P40, ARP2/3 complex 41 100.0 2.3E-43 7.9E-48 299.8 35.2 306 29-367 4-360 (372)
32 2ymu_A WD-40 repeat protein; u 100.0 1.6E-42 5.6E-47 311.4 41.7 299 5-367 237-538 (577)
33 2pm9_A Protein WEB1, protein t 100.0 1.7E-44 5.7E-49 311.4 27.1 295 31-369 65-415 (416)
34 1r5m_A SIR4-interacting protei 100.0 6.5E-43 2.2E-47 302.2 37.0 292 30-367 42-424 (425)
35 4aez_A CDC20, WD repeat-contai 100.0 3.9E-42 1.3E-46 294.9 37.2 282 30-368 88-380 (401)
36 4e54_B DNA damage-binding prot 100.0 1.7E-43 5.8E-48 306.3 28.3 309 21-368 107-430 (435)
37 4gga_A P55CDC, cell division c 100.0 9.1E-42 3.1E-46 294.3 38.9 282 36-368 108-395 (420)
38 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3.1E-41 1.1E-45 293.3 40.5 301 4-369 132-443 (445)
39 2pm9_A Protein WEB1, protein t 100.0 1.5E-43 5.1E-48 305.5 25.0 289 33-368 12-337 (416)
40 3dwl_C Actin-related protein 2 100.0 1.1E-43 3.8E-48 302.3 23.6 307 29-366 7-377 (377)
41 1got_B GT-beta; complex (GTP-b 100.0 2.1E-41 7.2E-46 283.7 36.8 243 81-368 53-301 (340)
42 4ggc_A P55CDC, cell division c 100.0 5.8E-41 2E-45 278.8 37.8 282 36-368 28-315 (318)
43 4h5i_A Guanine nucleotide-exch 100.0 7.2E-42 2.5E-46 288.7 32.6 289 33-368 14-343 (365)
44 3gre_A Serine/threonine-protei 100.0 5.5E-42 1.9E-46 297.5 32.3 304 22-365 51-437 (437)
45 2pm7_B Protein transport prote 100.0 2E-41 6.9E-46 278.3 32.7 254 81-367 7-284 (297)
46 3vl1_A 26S proteasome regulato 100.0 2.7E-42 9.1E-47 298.1 28.5 302 34-368 57-365 (420)
47 3vl1_A 26S proteasome regulato 100.0 8.7E-41 3E-45 288.6 37.4 297 22-368 87-419 (420)
48 3mkq_A Coatomer beta'-subunit; 100.0 4.8E-41 1.6E-45 313.6 37.3 292 23-368 3-302 (814)
49 1p22_A F-BOX/WD-repeat protein 100.0 5E-41 1.7E-45 291.0 34.5 277 30-368 130-414 (435)
50 2hes_X YDR267CP; beta-propelle 100.0 5.6E-41 1.9E-45 279.8 33.2 279 3-322 26-328 (330)
51 2j04_B YDR362CP, TAU91; beta p 100.0 5E-42 1.7E-46 300.3 27.8 295 32-368 132-517 (524)
52 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.9E-40 6.6E-45 278.3 36.2 295 4-324 31-337 (345)
53 2ovr_B FBW7, F-BOX/WD repeat p 100.0 5.3E-40 1.8E-44 285.6 39.1 283 22-368 107-391 (445)
54 3v7d_B Cell division control p 100.0 3.8E-40 1.3E-44 288.2 38.3 302 4-365 135-460 (464)
55 3frx_A Guanine nucleotide-bind 100.0 3.7E-40 1.3E-44 273.5 36.1 240 81-368 15-267 (319)
56 4g56_B MGC81050 protein; prote 100.0 2.4E-41 8.3E-46 284.7 28.8 251 28-323 89-344 (357)
57 3v7d_B Cell division control p 100.0 6.9E-40 2.4E-44 286.6 39.0 281 25-368 113-421 (464)
58 2pbi_B Guanine nucleotide-bind 100.0 2.7E-40 9.3E-45 278.1 34.8 244 81-368 62-315 (354)
59 1gxr_A ESG1, transducin-like e 100.0 1.4E-40 4.8E-45 278.7 32.8 279 32-368 8-296 (337)
60 3mmy_A MRNA export factor; mRN 100.0 2E-40 6.9E-45 281.1 33.5 301 17-366 23-344 (368)
61 2pm7_B Protein transport prote 100.0 2.7E-40 9.2E-45 271.6 33.1 258 27-322 3-285 (297)
62 4a11_B DNA excision repair pro 100.0 6.5E-40 2.2E-44 281.9 36.9 318 24-368 34-365 (408)
63 2oaj_A Protein SNI1; WD40 repe 100.0 4.4E-40 1.5E-44 306.8 38.6 337 4-368 32-605 (902)
64 3dw8_B Serine/threonine-protei 100.0 4.1E-40 1.4E-44 286.7 35.1 290 31-367 26-445 (447)
65 3iz6_a 40S ribosomal protein R 100.0 2.6E-41 8.8E-46 287.4 25.5 267 60-368 48-329 (380)
66 3bg1_A Protein SEC13 homolog; 100.0 5.6E-41 1.9E-45 278.0 26.4 258 28-322 8-293 (316)
67 3bg1_A Protein SEC13 homolog; 100.0 4.3E-41 1.5E-45 278.7 25.7 253 81-367 11-292 (316)
68 1pgu_A Actin interacting prote 100.0 3.1E-39 1.1E-43 292.2 38.4 316 24-369 151-615 (615)
69 4ery_A WD repeat-containing pr 100.0 3E-39 1E-43 267.7 34.4 266 4-321 38-311 (312)
70 3sfz_A APAF-1, apoptotic pepti 100.0 8.3E-40 2.8E-44 318.0 35.8 322 4-368 630-1034(1249)
71 3sfz_A APAF-1, apoptotic pepti 100.0 6.6E-39 2.3E-43 311.7 42.0 300 26-367 608-912 (1249)
72 1erj_A Transcriptional repress 100.0 5.2E-39 1.8E-43 274.5 34.2 255 35-323 125-390 (393)
73 1yfq_A Cell cycle arrest prote 100.0 4.2E-39 1.4E-43 270.4 33.1 285 26-360 4-315 (342)
74 2xzm_R RACK1; ribosome, transl 100.0 8E-39 2.7E-43 268.4 33.5 277 4-323 42-341 (343)
75 3f3f_A Nucleoporin SEH1; struc 100.0 4.6E-39 1.6E-43 270.7 31.3 295 27-368 5-337 (351)
76 3jrp_A Fusion protein of prote 100.0 6.2E-39 2.1E-43 273.1 31.1 251 81-367 9-286 (379)
77 2aq5_A Coronin-1A; WD40 repeat 100.0 3.6E-39 1.2E-43 276.7 29.3 288 33-368 34-342 (402)
78 3jrp_A Fusion protein of prote 100.0 3.5E-38 1.2E-42 268.5 35.1 259 25-322 3-287 (379)
79 1pgu_A Actin interacting prote 100.0 2.7E-38 9.2E-43 286.1 36.1 282 30-368 15-328 (615)
80 2oaj_A Protein SNI1; WD40 repe 100.0 5.7E-39 1.9E-43 299.3 32.5 316 28-366 146-659 (902)
81 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.2E-37 7.7E-42 269.2 35.8 286 34-368 5-391 (450)
82 1sq9_A Antiviral protein SKI8; 100.0 9.1E-38 3.1E-42 267.7 32.7 284 4-323 29-396 (397)
83 2xyi_A Probable histone-bindin 100.0 2E-37 6.8E-42 267.8 33.4 251 81-368 126-410 (430)
84 3mkq_A Coatomer beta'-subunit; 100.0 2.8E-37 9.4E-42 288.3 36.6 314 4-367 28-385 (814)
85 4gq1_A NUP37; propeller, trans 100.0 3.2E-37 1.1E-41 263.2 29.1 320 34-366 16-387 (393)
86 3dm0_A Maltose-binding peripla 100.0 6.9E-37 2.3E-41 280.1 33.3 244 81-368 380-632 (694)
87 1k8k_C P40, ARP2/3 complex 41 100.0 1.1E-36 3.7E-41 258.7 31.9 256 81-368 6-274 (372)
88 3vu4_A KMHSV2; beta-propeller 100.0 8.2E-37 2.8E-41 257.0 30.7 298 25-368 11-336 (355)
89 3dwl_C Actin-related protein 2 100.0 2.5E-38 8.5E-43 269.3 21.5 252 82-367 10-280 (377)
90 4aow_A Guanine nucleotide-bind 100.0 1.6E-36 5.3E-41 254.5 31.0 279 4-324 54-339 (340)
91 4aez_A CDC20, WD repeat-contai 100.0 2.9E-36 9.9E-41 258.4 32.9 251 24-325 124-383 (401)
92 4e54_B DNA damage-binding prot 100.0 3.3E-37 1.1E-41 266.9 26.8 293 4-325 135-433 (435)
93 3gre_A Serine/threonine-protei 100.0 3.3E-37 1.1E-41 267.5 25.9 298 21-368 5-359 (437)
94 2j04_B YDR362CP, TAU91; beta p 100.0 1.4E-37 4.9E-42 272.2 23.7 224 102-367 177-427 (524)
95 3i2n_A WD repeat-containing pr 100.0 1.9E-36 6.7E-41 255.6 29.8 261 31-323 63-354 (357)
96 3k26_A Polycomb protein EED; W 100.0 1.5E-36 5.2E-41 257.1 28.4 255 81-368 16-318 (366)
97 3ei3_B DNA damage-binding prot 100.0 9.5E-36 3.2E-40 253.9 32.1 284 4-322 89-382 (383)
98 3zwl_B Eukaryotic translation 100.0 5.9E-35 2E-39 247.6 36.4 252 81-368 30-304 (369)
99 4gga_A P55CDC, cell division c 100.0 3E-35 1E-39 253.6 34.8 246 27-325 141-398 (420)
100 3jro_A Fusion protein of prote 100.0 1.1E-36 3.6E-41 280.3 26.8 252 81-368 7-285 (753)
101 1r5m_A SIR4-interacting protei 100.0 1.1E-35 3.8E-40 256.9 31.5 272 60-368 27-319 (425)
102 1p22_A F-BOX/WD-repeat protein 100.0 1.5E-35 5.2E-40 256.7 31.7 267 4-324 146-416 (435)
103 3dw8_B Serine/threonine-protei 100.0 2.5E-36 8.4E-41 262.8 26.5 253 81-368 26-373 (447)
104 2j04_A TAU60, YPL007P, hypothe 100.0 1.3E-35 4.5E-40 253.8 29.2 272 30-367 12-296 (588)
105 3bws_A Protein LP49; two-domai 100.0 2E-34 7E-39 249.7 35.5 292 22-368 112-432 (433)
106 4a11_B DNA excision repair pro 100.0 5E-35 1.7E-39 251.5 31.4 291 30-367 96-404 (408)
107 2xyi_A Probable histone-bindin 100.0 2.9E-35 9.9E-40 254.3 29.9 259 29-323 124-411 (430)
108 3lrv_A PRE-mRNA-splicing facto 100.0 2.4E-35 8.2E-40 247.4 28.2 262 48-365 47-330 (343)
109 3jro_A Fusion protein of prote 100.0 1E-35 3.5E-40 273.8 27.7 257 27-322 3-285 (753)
110 1yfq_A Cell cycle arrest prote 100.0 6.5E-35 2.2E-39 244.8 29.8 254 81-368 9-282 (342)
111 2aq5_A Coronin-1A; WD40 repeat 100.0 4.8E-35 1.7E-39 251.0 29.5 237 89-368 40-299 (402)
112 3odt_A Protein DOA1; ubiquitin 100.0 1.3E-34 4.6E-39 239.8 31.0 270 4-329 32-303 (313)
113 3mmy_A MRNA export factor; mRN 100.0 1.3E-34 4.6E-39 245.3 29.7 246 81-368 37-304 (368)
114 4h5i_A Guanine nucleotide-exch 100.0 5.8E-34 2E-38 240.4 31.8 252 28-323 68-344 (365)
115 4ggc_A P55CDC, cell division c 100.0 2.9E-33 9.8E-38 232.4 33.9 244 28-324 62-317 (318)
116 2j04_A TAU60, YPL007P, hypothe 100.0 8.9E-35 3E-39 248.8 23.5 270 27-357 46-350 (588)
117 1l0q_A Surface layer protein; 100.0 3.2E-32 1.1E-36 232.7 36.7 264 49-368 2-275 (391)
118 3vu4_A KMHSV2; beta-propeller 100.0 5.6E-33 1.9E-37 233.7 29.6 258 62-368 3-271 (355)
119 2w18_A PALB2, fancn, partner a 100.0 2.4E-32 8.3E-37 219.8 30.8 266 21-320 23-355 (356)
120 3lrv_A PRE-mRNA-splicing facto 100.0 2.2E-33 7.4E-38 235.4 24.9 233 91-368 42-292 (343)
121 4gq1_A NUP37; propeller, trans 100.0 1.4E-33 4.7E-38 240.7 23.8 258 48-322 100-389 (393)
122 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.5E-32 1.2E-36 236.6 30.6 245 84-366 5-337 (450)
123 3f3f_A Nucleoporin SEH1; struc 100.0 7.5E-32 2.6E-36 226.6 29.3 273 4-324 26-339 (351)
124 1l0q_A Surface layer protein; 100.0 1.9E-30 6.4E-35 221.8 37.6 291 19-368 18-342 (391)
125 2w18_A PALB2, fancn, partner a 100.0 1.8E-30 6.1E-35 209.0 28.8 223 100-367 56-356 (356)
126 3bws_A Protein LP49; two-domai 100.0 5.6E-30 1.9E-34 221.8 31.3 237 84-368 123-390 (433)
127 1nir_A Nitrite reductase; hemo 100.0 1.3E-28 4.4E-33 217.3 34.2 307 19-368 165-514 (543)
128 2hqs_A Protein TOLB; TOLB, PAL 100.0 4.3E-28 1.5E-32 207.9 27.4 277 34-368 63-387 (415)
129 1nir_A Nitrite reductase; hemo 100.0 1.9E-26 6.5E-31 203.5 33.5 280 40-368 144-458 (543)
130 3u4y_A Uncharacterized protein 100.0 4.6E-26 1.6E-30 190.1 32.8 279 49-368 10-304 (331)
131 2hqs_A Protein TOLB; TOLB, PAL 100.0 1.1E-26 3.8E-31 199.1 28.5 266 27-350 111-410 (415)
132 1ri6_A Putative isomerase YBHE 100.0 9.2E-26 3.2E-30 189.1 32.2 281 50-367 6-307 (343)
133 3vgz_A Uncharacterized protein 100.0 4.5E-25 1.5E-29 185.7 34.4 274 32-358 39-334 (353)
134 1pby_B Quinohemoprotein amine 100.0 1.5E-25 5.3E-30 187.3 28.6 266 50-368 2-310 (337)
135 2ojh_A Uncharacterized protein 100.0 8E-26 2.7E-30 185.4 26.1 253 56-359 19-293 (297)
136 2ecf_A Dipeptidyl peptidase IV 99.9 2.5E-25 8.4E-30 205.6 30.1 285 33-367 36-412 (741)
137 2oit_A Nucleoporin 214KDA; NH2 99.9 1.4E-24 4.7E-29 186.7 28.7 307 32-367 35-404 (434)
138 2z3z_A Dipeptidyl aminopeptida 99.9 1.5E-24 5.2E-29 199.2 30.7 280 34-368 82-435 (706)
139 1xfd_A DIP, dipeptidyl aminope 99.9 4.4E-25 1.5E-29 203.4 22.8 284 34-367 17-392 (723)
140 2ecf_A Dipeptidyl peptidase IV 99.9 3.4E-24 1.2E-28 198.0 27.9 279 35-367 110-458 (741)
141 1k32_A Tricorn protease; prote 99.9 6.9E-24 2.3E-28 202.3 30.5 282 32-368 294-637 (1045)
142 3hfq_A Uncharacterized protein 99.9 2.6E-22 8.8E-27 168.5 33.8 270 60-367 18-316 (347)
143 1ri6_A Putative isomerase YBHE 99.9 1.2E-22 4.2E-27 170.1 31.6 279 31-350 35-335 (343)
144 1k32_A Tricorn protease; prote 99.9 2.7E-23 9.2E-28 198.3 28.7 275 28-366 198-500 (1045)
145 1jmx_B Amine dehydrogenase; ox 99.9 4.8E-23 1.6E-27 173.0 26.3 282 39-368 5-325 (349)
146 2oit_A Nucleoporin 214KDA; NH2 99.9 1.6E-23 5.6E-28 180.1 23.3 241 85-365 38-330 (434)
147 3o4h_A Acylamino-acid-releasin 99.9 5.6E-23 1.9E-27 184.5 27.3 268 32-367 20-314 (582)
148 1xfd_A DIP, dipeptidyl aminope 99.9 1.4E-22 4.7E-27 186.7 28.9 292 20-356 44-428 (723)
149 3vgz_A Uncharacterized protein 99.9 1.6E-21 5.5E-26 164.0 30.4 237 84-368 41-303 (353)
150 2z3z_A Dipeptidyl aminopeptida 99.9 2E-22 7E-27 185.1 25.8 280 36-367 28-390 (706)
151 2ojh_A Uncharacterized protein 99.9 1.9E-22 6.3E-27 165.3 22.8 236 28-312 36-292 (297)
152 3u4y_A Uncharacterized protein 99.9 6E-21 2.1E-25 159.0 32.0 258 21-323 28-305 (331)
153 3scy_A Hypothetical bacterial 99.9 2.6E-20 8.8E-25 157.2 33.5 272 59-367 28-336 (361)
154 1z68_A Fibroblast activation p 99.9 3E-22 1E-26 184.3 23.2 284 37-367 19-390 (719)
155 3hfq_A Uncharacterized protein 99.9 4.5E-20 1.6E-24 154.8 33.9 257 31-326 37-323 (347)
156 3pe7_A Oligogalacturonate lyas 99.9 4.2E-21 1.4E-25 163.6 27.2 287 25-366 22-380 (388)
157 3o4h_A Acylamino-acid-releasin 99.9 1.1E-21 3.6E-26 176.2 22.9 231 83-366 21-274 (582)
158 1pby_B Quinohemoprotein amine 99.9 9.8E-21 3.3E-25 158.1 26.4 259 20-332 18-318 (337)
159 1jof_A Carboxy-CIS,CIS-muconat 99.9 8.2E-20 2.8E-24 154.1 29.4 274 59-368 15-341 (365)
160 3scy_A Hypothetical bacterial 99.9 1.1E-18 3.6E-23 147.3 35.7 271 32-346 48-360 (361)
161 4a5s_A Dipeptidyl peptidase 4 99.9 1.6E-20 5.6E-25 172.9 23.6 283 33-368 16-353 (740)
162 1z68_A Fibroblast activation p 99.9 1.8E-20 6.2E-25 172.5 22.3 282 35-368 61-443 (719)
163 1jof_A Carboxy-CIS,CIS-muconat 99.9 2.7E-18 9.3E-23 144.8 31.1 253 32-323 38-342 (365)
164 3c5m_A Oligogalacturonate lyas 99.9 1.5E-19 5.2E-24 154.4 22.9 276 36-366 38-380 (396)
165 3azo_A Aminopeptidase; POP fam 99.8 1.2E-18 3.9E-23 159.0 28.6 288 28-366 18-367 (662)
166 2oiz_A Aromatic amine dehydrog 99.8 8.8E-18 3E-22 141.1 31.1 263 59-368 32-334 (361)
167 1q7f_A NHL, brain tumor CG1071 99.8 1.4E-17 4.9E-22 135.6 31.2 237 84-368 30-280 (286)
168 1jmx_B Amine dehydrogenase; ox 99.8 2.2E-17 7.6E-22 138.4 28.5 261 21-332 29-333 (349)
169 2oiz_A Aromatic amine dehydrog 99.8 2.1E-17 7.3E-22 138.7 28.2 290 21-350 39-360 (361)
170 3fvz_A Peptidyl-glycine alpha- 99.8 1.5E-17 5.3E-22 138.1 26.9 254 83-367 23-321 (329)
171 3pe7_A Oligogalacturonate lyas 99.8 1.1E-17 3.7E-22 142.5 23.9 257 62-368 14-329 (388)
172 3fvz_A Peptidyl-glycine alpha- 99.8 2.2E-16 7.6E-21 131.1 29.9 247 33-323 23-323 (329)
173 2dg1_A DRP35, lactonase; beta 99.8 7.3E-17 2.5E-21 134.4 26.6 276 34-358 6-300 (333)
174 1q7f_A NHL, brain tumor CG1071 99.8 5.5E-16 1.9E-20 126.2 30.8 244 31-323 27-281 (286)
175 3azo_A Aminopeptidase; POP fam 99.8 6E-17 2E-21 147.7 27.7 257 28-324 62-371 (662)
176 2z2n_A Virginiamycin B lyase; 99.8 7.9E-15 2.7E-19 120.0 37.4 281 29-368 10-295 (299)
177 2gop_A Trilobed protease; beta 99.8 1.4E-15 4.6E-20 127.5 30.3 255 35-366 16-329 (347)
178 3dsm_A Uncharacterized protein 99.8 7.9E-16 2.7E-20 127.6 26.7 262 59-367 18-301 (328)
179 3c5m_A Oligogalacturonate lyas 99.8 3.5E-17 1.2E-21 139.7 17.7 256 62-368 14-329 (396)
180 3e5z_A Putative gluconolactona 99.8 3.1E-15 1.1E-19 122.3 27.9 235 85-367 29-285 (296)
181 1rwi_B Serine/threonine-protei 99.8 1.5E-15 5E-20 122.5 25.5 237 85-368 25-264 (270)
182 4a5s_A Dipeptidyl peptidase 4 99.7 2.3E-15 8E-20 138.6 29.8 299 26-367 49-448 (740)
183 2xdw_A Prolyl endopeptidase; a 99.7 8.1E-15 2.8E-19 134.5 32.8 242 85-368 126-414 (710)
184 1qks_A Cytochrome CD1 nitrite 99.7 9.6E-14 3.3E-18 122.4 38.0 310 22-368 186-538 (567)
185 2bkl_A Prolyl endopeptidase; m 99.7 1.9E-15 6.4E-20 138.3 28.0 276 48-368 78-397 (695)
186 3no2_A Uncharacterized protein 99.7 3.7E-15 1.3E-19 119.9 26.3 219 97-356 5-231 (276)
187 1qks_A Cytochrome CD1 nitrite 99.7 4.4E-14 1.5E-18 124.6 34.9 275 49-368 167-477 (567)
188 2dg1_A DRP35, lactonase; beta 99.7 8.4E-14 2.9E-18 115.9 32.4 241 26-312 37-300 (333)
189 2qc5_A Streptogramin B lactona 99.7 2.9E-13 9.8E-18 110.8 34.8 281 29-367 15-299 (300)
190 2bkl_A Prolyl endopeptidase; m 99.7 1.5E-15 5.3E-20 138.9 22.8 247 31-327 118-402 (695)
191 3e5z_A Putative gluconolactona 99.7 2.7E-14 9.4E-19 116.7 27.8 238 29-323 23-287 (296)
192 2xdw_A Prolyl endopeptidase; a 99.7 1.4E-14 4.9E-19 132.9 28.7 244 31-324 122-416 (710)
193 1rwi_B Serine/threonine-protei 99.7 1.1E-14 3.9E-19 117.3 23.4 237 35-324 25-266 (270)
194 2mad_H Methylamine dehydrogena 99.7 7E-13 2.4E-17 111.4 34.3 269 48-368 31-350 (373)
195 3sjl_D Methylamine dehydrogena 99.7 1.3E-13 4.5E-18 114.2 29.1 271 48-368 43-363 (386)
196 3dsm_A Uncharacterized protein 99.7 1.4E-13 4.6E-18 114.1 29.2 242 34-332 44-309 (328)
197 3no2_A Uncharacterized protein 99.7 7.2E-14 2.5E-18 112.4 26.5 246 49-344 5-272 (276)
198 2gop_A Trilobed protease; beta 99.7 3E-14 1E-18 119.3 24.1 222 34-321 59-330 (347)
199 1yr2_A Prolyl oligopeptidase; 99.7 1.2E-13 4E-18 127.3 30.0 279 48-368 117-441 (741)
200 2z2n_A Virginiamycin B lyase; 99.7 1.1E-12 3.9E-17 107.1 32.5 238 82-366 13-253 (299)
201 3c75_H MADH, methylamine dehyd 99.6 5.1E-13 1.7E-17 112.8 26.4 267 59-368 100-402 (426)
202 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 2.1E-12 7.2E-17 106.4 28.1 248 31-323 15-300 (314)
203 1yr2_A Prolyl oligopeptidase; 99.6 2.9E-13 1E-17 124.7 24.4 244 31-324 160-443 (741)
204 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 1.6E-12 5.3E-17 107.2 25.5 241 86-368 20-299 (314)
205 1xip_A Nucleoporin NUP159; bet 99.6 1.8E-13 6.2E-18 113.9 19.5 149 35-207 39-192 (388)
206 2qc5_A Streptogramin B lactona 99.6 3.1E-11 1.1E-15 98.6 32.5 238 83-367 19-259 (300)
207 3hrp_A Uncharacterized protein 99.6 4.9E-12 1.7E-16 107.7 28.0 259 34-320 131-408 (409)
208 3hrp_A Uncharacterized protein 99.6 7.7E-12 2.6E-16 106.5 29.1 244 85-367 132-409 (409)
209 3sjl_D Methylamine dehydrogena 99.6 3.4E-12 1.2E-16 105.9 25.7 289 20-348 66-384 (386)
210 3g4e_A Regucalcin; six bladed 99.6 4.8E-11 1.7E-15 97.3 32.4 227 29-303 8-255 (297)
211 1xip_A Nucleoporin NUP159; bet 99.6 2.3E-13 8E-18 113.2 17.8 174 130-354 39-230 (388)
212 2mad_H Methylamine dehydrogena 99.6 4.7E-11 1.6E-15 100.2 31.3 265 22-324 56-352 (373)
213 3g4e_A Regucalcin; six bladed 99.5 5.2E-11 1.8E-15 97.1 28.5 228 88-356 17-260 (297)
214 2qe8_A Uncharacterized protein 99.5 5.2E-12 1.8E-16 105.3 19.6 280 22-359 8-312 (343)
215 3q7m_A Lipoprotein YFGL, BAMB; 99.5 6.6E-10 2.2E-14 93.9 32.4 259 50-365 104-375 (376)
216 2ece_A 462AA long hypothetical 99.5 3.5E-10 1.2E-14 94.5 28.7 235 95-356 93-399 (462)
217 3iuj_A Prolyl endopeptidase; h 99.4 6.3E-11 2.2E-15 108.2 25.4 246 30-326 125-409 (693)
218 2ghs_A AGR_C_1268P; regucalcin 99.4 2E-09 6.7E-14 89.0 31.7 218 34-302 49-284 (326)
219 2ghs_A AGR_C_1268P; regucalcin 99.4 1E-09 3.5E-14 90.7 29.9 225 88-357 53-291 (326)
220 1mda_H Methylamine dehydrogena 99.4 2.4E-11 8.2E-16 101.0 19.8 255 59-368 47-346 (368)
221 3dr2_A Exported gluconolactona 99.4 2.2E-10 7.7E-15 93.8 25.1 230 87-365 48-303 (305)
222 3iuj_A Prolyl endopeptidase; h 99.4 7.5E-11 2.5E-15 107.8 24.0 241 84-368 129-405 (693)
223 1kb0_A Quinohemoprotein alcoho 99.4 7E-11 2.4E-15 107.1 23.3 291 50-368 78-507 (677)
224 3q7m_A Lipoprotein YFGL, BAMB; 99.4 1.2E-09 4E-14 92.4 29.4 274 49-368 53-337 (376)
225 1yiq_A Quinohemoprotein alcoho 99.4 1.2E-10 4.2E-15 105.7 24.1 295 49-368 70-505 (689)
226 3c75_H MADH, methylamine dehyd 99.4 4.6E-10 1.6E-14 94.9 25.4 275 20-331 106-409 (426)
227 3hxj_A Pyrrolo-quinoline quino 99.4 9.4E-11 3.2E-15 97.2 20.5 263 34-367 60-323 (330)
228 1yiq_A Quinohemoprotein alcoho 99.4 2E-09 7E-14 97.8 29.4 158 49-213 121-345 (689)
229 1kb0_A Quinohemoprotein alcoho 99.3 1.6E-09 5.3E-14 98.3 27.8 283 49-353 128-535 (677)
230 3dr2_A Exported gluconolactona 99.3 2.4E-09 8.2E-14 87.6 26.5 232 29-319 40-303 (305)
231 2hz6_A Endoplasmic reticulum t 99.3 8.8E-13 3E-17 110.9 6.1 179 49-271 9-194 (369)
232 2hz6_A Endoplasmic reticulum t 99.3 1.6E-12 5.4E-17 109.4 6.2 205 96-350 8-216 (369)
233 2qe8_A Uncharacterized protein 99.3 3.2E-10 1.1E-14 94.4 19.1 227 85-366 18-276 (343)
234 1npe_A Nidogen, entactin; glyc 99.3 8E-08 2.7E-12 76.9 31.7 252 50-350 2-263 (267)
235 2iwa_A Glutamine cyclotransfer 99.2 1.1E-08 3.8E-13 80.4 23.2 208 119-367 10-236 (266)
236 1mda_H Methylamine dehydrogena 99.2 1.5E-09 5.2E-14 90.2 18.4 279 20-347 53-366 (368)
237 4a2l_A BT_4663, two-component 99.2 4.4E-07 1.5E-11 84.4 36.2 285 36-368 175-480 (795)
238 1kv9_A Type II quinohemoprotei 99.2 6.4E-09 2.2E-13 94.3 22.5 292 50-368 67-488 (668)
239 1npe_A Nidogen, entactin; glyc 99.2 4.8E-07 1.6E-11 72.3 30.8 226 100-368 3-238 (267)
240 3hxj_A Pyrrolo-quinoline quino 99.2 5.9E-09 2E-13 86.3 20.3 217 49-323 108-325 (330)
241 3nol_A Glutamine cyclotransfer 99.1 3.7E-08 1.3E-12 76.4 22.3 193 120-357 33-244 (262)
242 1fwx_A Nitrous oxide reductase 99.1 1.4E-08 4.8E-13 88.1 21.3 259 52-367 18-360 (595)
243 2ece_A 462AA long hypothetical 99.1 2.5E-07 8.7E-12 77.5 27.8 247 48-310 94-399 (462)
244 2iwa_A Glutamine cyclotransfer 99.1 3.5E-08 1.2E-12 77.6 20.6 198 87-323 24-238 (266)
245 1fwx_A Nitrous oxide reductase 99.1 3.8E-08 1.3E-12 85.4 21.6 259 48-332 100-441 (595)
246 4a2l_A BT_4663, two-component 99.1 1.6E-06 5.5E-11 80.7 33.9 284 33-367 262-570 (795)
247 2ad6_A Methanol dehydrogenase 99.0 1.6E-07 5.5E-12 83.4 24.9 113 49-169 63-194 (571)
248 3nok_A Glutaminyl cyclase; bet 99.0 2E-07 6.8E-12 72.4 21.6 193 120-356 45-253 (268)
249 3v9f_A Two-component system se 99.0 1.3E-06 4.3E-11 81.2 30.7 286 33-367 257-567 (781)
250 1kv9_A Type II quinohemoprotei 99.0 5.5E-07 1.9E-11 81.7 27.5 155 50-212 118-339 (668)
251 3mbr_X Glutamine cyclotransfer 99.0 5.4E-07 1.9E-11 69.4 23.1 193 121-356 12-222 (243)
252 3v9f_A Two-component system se 99.0 1.1E-05 3.6E-10 75.1 35.9 286 34-367 211-523 (781)
253 3v65_B Low-density lipoprotein 99.0 5E-06 1.7E-10 70.1 30.4 229 50-324 88-320 (386)
254 3nol_A Glutamine cyclotransfer 99.0 3.6E-07 1.2E-11 71.0 21.1 197 82-310 39-244 (262)
255 1w6s_A Methanol dehydrogenase 99.0 5.5E-07 1.9E-11 80.0 25.1 115 50-169 63-200 (599)
256 3v64_C Agrin; beta propeller, 99.0 9.1E-06 3.1E-10 67.5 31.4 241 33-324 33-277 (349)
257 2ad6_A Methanol dehydrogenase 99.0 2.4E-06 8.3E-11 75.9 29.0 157 49-213 115-342 (571)
258 3nok_A Glutaminyl cyclase; bet 98.9 5.4E-07 1.8E-11 70.0 21.0 190 88-311 59-255 (268)
259 3mbr_X Glutamine cyclotransfer 98.9 2.4E-06 8E-11 65.8 23.5 171 20-211 6-184 (243)
260 1k3i_A Galactose oxidase precu 98.9 4.1E-07 1.4E-11 82.6 22.2 277 38-357 190-530 (656)
261 1flg_A Protein (quinoprotein e 98.9 1.1E-06 3.9E-11 78.1 24.5 115 49-168 69-201 (582)
262 2p4o_A Hypothetical protein; p 98.9 8.7E-06 3E-10 66.4 28.2 237 86-357 34-277 (306)
263 1ijq_A LDL receptor, low-densi 98.9 1.8E-05 6.1E-10 64.8 30.0 226 100-366 3-236 (316)
264 1ijq_A LDL receptor, low-densi 98.8 2.6E-05 9E-10 63.8 31.9 230 51-324 3-240 (316)
265 3v65_B Low-density lipoprotein 98.8 1.5E-05 5.2E-10 67.2 27.3 223 100-365 89-315 (386)
266 3qqz_A Putative uncharacterize 98.8 2.6E-05 8.8E-10 61.0 26.3 218 124-366 22-251 (255)
267 1flg_A Protein (quinoprotein e 98.8 3.6E-05 1.2E-09 68.5 30.2 160 50-214 118-363 (582)
268 3v64_C Agrin; beta propeller, 98.8 4.3E-05 1.5E-09 63.5 28.9 223 100-365 46-272 (349)
269 1k3i_A Galactose oxidase precu 98.7 1.8E-06 6E-11 78.5 21.2 108 95-207 195-324 (656)
270 1w6s_A Methanol dehydrogenase 98.7 2.9E-05 1E-09 69.1 28.3 154 52-214 124-350 (599)
271 2fp8_A Strictosidine synthase; 98.7 5.3E-06 1.8E-10 68.2 22.0 236 88-367 23-312 (322)
272 2fp8_A Strictosidine synthase; 98.7 3.9E-05 1.3E-09 63.1 26.5 240 34-323 19-314 (322)
273 3qqz_A Putative uncharacterize 98.7 6.1E-05 2.1E-09 58.9 25.3 168 27-206 20-204 (255)
274 3p5b_L Low density lipoprotein 98.7 0.00013 4.6E-09 61.7 30.4 225 100-365 85-317 (400)
275 2p4o_A Hypothetical protein; p 98.6 0.0001 3.5E-09 60.0 30.5 238 17-302 16-270 (306)
276 3p5b_L Low density lipoprotein 98.6 0.00015 5.1E-09 61.4 32.8 231 50-324 84-322 (400)
277 3m0c_C LDL receptor, low-densi 98.6 0.00027 9.1E-09 65.0 31.2 231 50-324 396-634 (791)
278 3sov_A LRP-6, low-density lipo 98.6 0.00014 4.7E-09 59.5 27.9 230 50-325 5-241 (318)
279 2xe4_A Oligopeptidase B; hydro 98.6 4.4E-05 1.5E-09 70.4 24.7 112 87-206 175-304 (751)
280 3sov_A LRP-6, low-density lipo 98.5 0.0002 7E-09 58.5 27.2 225 100-366 6-236 (318)
281 3tc9_A Hypothetical hydrolase; 98.5 0.00022 7.6E-09 61.0 26.2 155 35-206 138-301 (430)
282 2xe4_A Oligopeptidase B; hydro 98.5 0.00019 6.4E-09 66.3 27.4 153 35-206 175-354 (751)
283 1n7d_A LDL receptor, low-densi 98.4 3.7E-06 1.3E-10 76.5 13.9 229 51-323 379-615 (699)
284 3m0c_C LDL receptor, low-densi 98.4 0.00094 3.2E-08 61.5 29.5 225 100-365 397-629 (791)
285 3tc9_A Hypothetical hydrolase; 98.4 0.00042 1.4E-08 59.3 25.8 246 87-367 140-429 (430)
286 3kya_A Putative phosphatase; s 98.4 0.00064 2.2E-08 58.5 26.3 162 35-206 140-341 (496)
287 2vpj_A Kelch-like protein 12; 98.4 0.00016 5.6E-09 58.6 21.3 226 100-368 17-278 (301)
288 2vpj_A Kelch-like protein 12; 98.3 0.00064 2.2E-08 55.1 23.7 237 49-332 15-288 (301)
289 2xn4_A Kelch-like protein 2; s 98.3 0.0005 1.7E-08 55.8 22.0 226 100-368 18-276 (302)
290 1n7d_A LDL receptor, low-densi 98.3 1.1E-05 3.6E-10 73.6 13.0 220 107-366 385-612 (699)
291 3amr_A 3-phytase; beta-propell 98.3 0.0011 3.6E-08 54.0 23.1 200 141-367 40-262 (355)
292 4a0p_A LRP6, LRP-6, low-densit 98.3 0.0022 7.5E-08 57.6 30.7 230 49-324 6-239 (628)
293 4hw6_A Hypothetical protein, I 98.3 0.0016 5.4E-08 55.8 26.7 157 35-206 140-304 (433)
294 3ii7_A Kelch-like protein 7; p 98.3 0.00038 1.3E-08 56.6 21.1 226 100-368 14-272 (306)
295 3ii7_A Kelch-like protein 7; p 98.2 0.0012 4.2E-08 53.5 25.2 237 49-332 12-282 (306)
296 2xbg_A YCF48-like protein; pho 98.2 0.0014 4.9E-08 53.7 30.4 289 20-365 24-319 (327)
297 4hw6_A Hypothetical protein, I 98.1 0.0027 9.2E-08 54.3 24.5 243 86-367 141-432 (433)
298 3s94_A LRP-6, low-density lipo 98.1 0.0044 1.5E-07 55.6 32.3 161 33-206 39-202 (619)
299 3ei3_A DNA damage-binding prot 98.1 0.008 2.7E-07 57.9 33.7 216 109-364 808-1058(1158)
300 2xn4_A Kelch-like protein 2; s 98.1 0.0024 8.3E-08 51.7 23.0 230 49-325 16-279 (302)
301 3s94_A LRP-6, low-density lipo 98.1 0.0055 1.9E-07 55.0 26.4 231 50-324 10-245 (619)
302 1zgk_A Kelch-like ECH-associat 98.1 0.0011 3.6E-08 54.0 20.1 230 95-368 23-287 (308)
303 3kya_A Putative phosphatase; s 98.1 0.0046 1.6E-07 53.3 24.3 257 87-368 142-475 (496)
304 2p9w_A MAL S 1 allergenic prot 98.0 0.0032 1.1E-07 50.8 22.6 168 30-206 9-215 (334)
305 1zgk_A Kelch-like ECH-associat 98.0 0.0034 1.1E-07 51.0 21.9 237 49-332 25-297 (308)
306 4a0p_A LRP6, LRP-6, low-densit 98.0 0.0082 2.8E-07 53.9 29.7 223 100-366 8-235 (628)
307 4asc_A Kelch repeat and BTB do 98.0 0.0043 1.5E-07 50.6 22.6 225 100-368 7-277 (315)
308 3amr_A 3-phytase; beta-propell 98.0 0.0046 1.6E-07 50.4 22.5 205 100-332 42-272 (355)
309 4asc_A Kelch repeat and BTB do 97.9 0.0061 2.1E-07 49.7 22.3 184 51-270 7-222 (315)
310 2uvk_A YJHT; unknown function, 97.8 0.0093 3.2E-07 49.5 22.5 143 49-204 20-224 (357)
311 2xbg_A YCF48-like protein; pho 97.8 0.0088 3E-07 49.0 27.9 240 33-320 79-320 (327)
312 2woz_A Kelch repeat and BTB do 97.8 0.0094 3.2E-07 48.6 21.2 225 100-368 18-287 (318)
313 2xzh_A Clathrin heavy chain 1; 97.8 0.0089 3E-07 47.9 32.3 259 60-366 51-330 (365)
314 3ott_A Two-component system se 97.6 0.046 1.6E-06 50.6 34.9 288 34-365 146-445 (758)
315 2uvk_A YJHT; unknown function, 97.5 0.027 9.1E-07 46.7 22.0 42 314-359 286-327 (357)
316 1bpo_A Protein (clathrin); cla 97.5 0.029 9.9E-07 47.0 32.2 259 60-366 50-329 (494)
317 2woz_A Kelch repeat and BTB do 97.4 0.038 1.3E-06 44.9 24.0 142 51-207 18-185 (318)
318 2ism_A Putative oxidoreductase 97.4 0.043 1.5E-06 45.4 26.0 101 87-194 34-153 (352)
319 2xzh_A Clathrin heavy chain 1; 97.3 0.041 1.4E-06 44.2 30.8 242 40-323 73-333 (365)
320 1xi4_A Clathrin heavy chain; a 97.3 0.047 1.6E-06 53.0 20.9 227 60-330 50-297 (1630)
321 3ei3_A DNA damage-binding prot 97.3 0.16 5.4E-06 49.2 35.8 136 59-206 493-636 (1158)
322 2ism_A Putative oxidoreductase 97.2 0.076 2.6E-06 44.0 26.8 105 34-148 31-153 (352)
323 2p9w_A MAL S 1 allergenic prot 97.1 0.072 2.5E-06 43.1 24.8 175 129-323 13-216 (334)
324 3ott_A Two-component system se 97.1 0.16 5.5E-06 47.0 28.1 238 34-321 373-625 (758)
325 3a9g_A Putative uncharacterize 97.1 0.093 3.2E-06 43.4 27.4 64 290-356 259-330 (354)
326 2be1_A Serine/threonine-protei 97.1 0.091 3.1E-06 42.9 20.6 114 100-214 12-138 (339)
327 3pbp_A Nucleoporin NUP82; beta 97.0 0.093 3.2E-06 43.9 17.5 148 48-202 31-208 (452)
328 3pbp_A Nucleoporin NUP82; beta 96.9 0.063 2.2E-06 44.9 15.3 167 140-318 31-208 (452)
329 3sre_A PON1, serum paraoxonase 96.7 0.21 7.1E-06 41.2 22.7 64 291-358 222-287 (355)
330 1bpo_A Protein (clathrin); cla 96.7 0.24 8.2E-06 41.7 30.4 238 48-323 76-332 (494)
331 1tl2_A L10, protein (tachylect 96.6 0.16 5.3E-06 38.4 14.3 188 140-361 3-203 (236)
332 1xi4_A Clathrin heavy chain; a 96.5 0.28 9.5E-06 47.9 18.7 220 107-368 47-289 (1630)
333 2g8s_A Glucose/sorbosone dehyd 96.5 0.3 1E-05 40.4 28.2 74 291-367 272-351 (353)
334 2zwa_A Leucine carboxyl methyl 96.4 0.53 1.8E-05 43.0 20.5 197 140-368 397-635 (695)
335 2zwa_A Leucine carboxyl methyl 96.2 0.72 2.5E-05 42.1 20.8 108 95-207 396-523 (695)
336 3qhy_B Beta-lactamase inhibito 96.0 0.43 1.5E-05 38.0 18.8 221 85-367 25-245 (282)
337 3a9g_A Putative uncharacterize 95.8 0.63 2.2E-05 38.4 28.1 115 22-148 18-153 (354)
338 2be1_A Serine/threonine-protei 95.2 1 3.4E-05 36.8 17.0 115 49-169 10-139 (339)
339 3sre_A PON1, serum paraoxonase 94.8 1.4 4.9E-05 36.2 22.6 158 34-205 112-297 (355)
340 3das_A Putative oxidoreductase 94.6 1.6 5.5E-05 35.8 26.5 103 87-195 35-159 (347)
341 3das_A Putative oxidoreductase 94.5 1.7 5.7E-05 35.7 30.0 262 26-313 24-330 (347)
342 2g8s_A Glucose/sorbosone dehyd 94.5 1.7 5.9E-05 35.8 24.9 262 35-316 19-348 (353)
343 1tl2_A L10, protein (tachylect 94.4 1.2 4.1E-05 33.7 13.9 149 34-206 41-208 (236)
344 1cru_A Protein (soluble quinop 93.4 3.4 0.00012 35.4 21.1 65 129-194 27-99 (454)
345 3qhy_B Beta-lactamase inhibito 93.0 2.7 9.3E-05 33.3 21.4 241 35-349 25-265 (282)
346 4gq2_M Nucleoporin NUP120; bet 89.9 8.2 0.00028 36.7 14.3 29 95-124 245-273 (950)
347 3b7f_A Glycosyl hydrolase, BNR 89.7 8 0.00027 32.3 26.0 187 3-197 24-254 (394)
348 1cru_A Protein (soluble quinop 89.2 9.8 0.00034 32.6 31.3 105 87-195 30-163 (454)
349 3uc1_A DNA gyrase subunit A; D 88.9 8.2 0.00028 31.3 20.6 105 96-206 108-228 (327)
350 3sbq_A Nitrous-oxide reductase 88.6 12 0.00042 32.9 21.4 74 290-367 323-407 (638)
351 2wg3_C Hedgehog-interacting pr 88.3 12 0.0004 32.2 14.7 117 243-359 16-160 (463)
352 3sbq_A Nitrous-oxide reductase 88.1 13 0.00045 32.7 12.9 65 94-160 331-408 (638)
353 3s25_A Hypothetical 7-bladed b 86.7 11 0.00037 30.2 21.3 65 245-324 151-218 (302)
354 3al9_A Plexin-A2; beta-propell 84.6 4.4 0.00015 35.6 8.5 73 291-363 401-476 (539)
355 1q47_A Semaphorin 3A; beta pro 84.2 4.8 0.00017 34.8 8.5 73 291-363 405-487 (495)
356 1sqj_A OXG-RCBH, oligoxylogluc 81.9 33 0.0011 31.9 16.7 157 33-196 14-190 (789)
357 4gz8_A Semaphorin-3A; multi-do 78.6 18 0.00063 32.6 10.3 72 292-363 414-495 (667)
358 3uc1_A DNA gyrase subunit A; D 77.8 26 0.00091 28.3 23.9 244 100-366 5-277 (327)
359 3f7f_A Nucleoporin NUP120; nuc 77.7 27 0.00093 31.8 11.0 31 241-271 222-252 (729)
360 3ol2_B Plexin-B1; beta-propell 75.0 14 0.00048 32.2 8.4 72 291-363 388-461 (528)
361 3b7f_A Glycosyl hydrolase, BNR 74.3 36 0.0012 28.2 28.8 144 50-200 23-202 (394)
362 1olz_A Semaphorin 4D; developm 74.2 24 0.00082 31.9 10.0 72 292-363 399-477 (663)
363 3zwu_A Alkaline phosphatase PH 73.0 16 0.00055 32.5 8.4 59 292-355 478-548 (592)
364 4gq2_M Nucleoporin NUP120; bet 72.2 24 0.00084 33.6 10.0 37 35-75 237-274 (950)
365 4fhn_B Nucleoporin NUP120; pro 71.8 17 0.00059 35.4 9.1 29 95-124 247-275 (1139)
366 2cn3_A Xyloglucanase, beta-1,4 71.3 64 0.0022 29.7 14.6 113 34-150 23-153 (737)
367 4a9v_A PHOX; hydrolase, beta-p 70.7 19 0.00065 31.8 8.1 62 291-356 477-549 (592)
368 3oky_A Plexin-A2; transmembran 69.6 19 0.00066 32.6 8.2 73 291-363 400-475 (681)
369 3mvd_K Regulator of chromosome 69.3 50 0.0017 27.7 30.7 251 100-367 86-373 (423)
370 3nvq_A Semaphorin-7A; beta-pro 68.5 21 0.00071 31.7 8.0 61 303-363 380-444 (590)
371 3s25_A Hypothetical 7-bladed b 64.2 53 0.0018 26.2 27.4 86 108-207 88-177 (302)
372 3oky_B Putative uncharacterize 63.5 76 0.0026 28.0 10.5 72 292-363 405-495 (565)
373 3f7f_A Nucleoporin NUP120; nuc 61.6 17 0.00058 33.1 6.2 36 130-168 223-258 (729)
374 3no0_A DNA gyrase subunit A; D 60.8 59 0.002 25.5 21.5 196 100-322 37-246 (276)
375 3kci_A Probable E3 ubiquitin-p 58.8 77 0.0026 26.3 31.9 213 86-322 107-345 (389)
376 3l6v_A GYRA, DNA gyrase subuni 58.5 78 0.0027 26.2 24.4 161 136-322 3-180 (370)
377 1sqj_A OXG-RCBH, oligoxylogluc 56.0 1.3E+02 0.0044 28.0 24.3 113 83-198 14-144 (789)
378 4hvt_A Ritya.17583.B, post-pro 54.8 1.3E+02 0.0044 27.6 23.4 103 258-366 318-428 (711)
379 1zi0_A DNA gyrase subunit A; b 51.1 93 0.0032 24.8 23.7 244 100-366 5-275 (307)
380 3zwu_A Alkaline phosphatase PH 50.1 78 0.0027 28.2 8.5 58 131-192 478-547 (592)
381 4a9v_A PHOX; hydrolase, beta-p 45.1 1.5E+02 0.0051 26.4 9.2 61 129-193 476-548 (592)
382 3q6k_A 43.2 kDa salivary prote 43.3 1.4E+02 0.0049 24.8 20.4 168 35-206 88-306 (381)
383 3no0_A DNA gyrase subunit A; D 41.3 1.3E+02 0.0043 23.6 24.1 156 34-206 24-196 (276)
384 4fww_A Macrophage-stimulating 40.0 1.3E+02 0.0044 26.4 8.3 73 290-363 405-479 (527)
385 3nvn_B Plexin-C1; beta-propell 39.8 1.6E+02 0.0055 25.2 8.3 71 291-364 341-417 (476)
386 2wg3_C Hedgehog-interacting pr 38.0 1.9E+02 0.0066 24.7 29.9 106 88-197 18-160 (463)
387 3l6v_A GYRA, DNA gyrase subuni 36.9 1.8E+02 0.0061 24.0 26.0 154 95-269 5-180 (370)
388 3v4v_A Integrin alpha-4; cell 30.8 2.9E+02 0.0099 24.7 13.2 119 246-365 171-310 (597)
389 3a0f_A Xyloglucanase; beta-pro 29.8 3.4E+02 0.012 25.1 18.9 162 31-197 18-203 (763)
390 1olz_A Semaphorin 4D; developm 27.5 2.4E+02 0.0083 25.6 8.1 58 142-201 416-477 (663)
391 4fhn_B Nucleoporin NUP120; pro 26.1 4.7E+02 0.016 25.6 18.9 22 250-271 249-270 (1139)
392 1wp5_A Topoisomerase IV; broke 25.8 2.6E+02 0.0089 22.5 25.3 250 95-366 3-275 (323)
393 1q47_A Semaphorin 3A; beta pro 25.3 2E+02 0.0069 24.9 6.9 55 100-155 423-487 (495)
394 3kci_A Probable E3 ubiquitin-p 23.4 3.1E+02 0.011 22.5 35.0 245 100-367 64-344 (389)
395 3a0f_A Xyloglucanase; beta-pro 21.4 4.9E+02 0.017 24.0 14.1 125 35-166 488-623 (763)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.6e-52 Score=359.72 Aligned_cols=287 Identities=22% Similarity=0.385 Sum_probs=259.4
Q ss_pred eeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEe
Q 017553 26 TNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG 104 (369)
Q Consensus 26 ~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~ 104 (369)
...+.+|.++|++++|+| ++.+|++++.|+ |+|||+.+++....+. .|...|.+++|+ |+|+ +|++|
T Consensus 101 ~~~l~gh~~~V~~~~~~p----~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~-----~h~~~V~~v~~~--~~~~-~l~sg 168 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHP----VFSVMVSASEDATIKVWDYETGDFERTLK-----GHTDSVQDISFD--HSGK-LLASC 168 (410)
T ss_dssp SCEEECCSSCEEEEEECS----SSSEEEEEESSSCEEEEETTTCCCCEEEC-----CCSSCEEEEEEC--TTSS-EEEEE
T ss_pred eEeecccCCcEEEEEEcC----CCCEEEEEeCCCeEEEEECCCCcEEEEEe-----ccCCcEEEEEEc--CCCC-EEEEE
Confidence 445789999999999999 689999999998 9999999998888777 578899999998 8898 99999
Q ss_pred ecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecC
Q 017553 105 GINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHP 184 (369)
Q Consensus 105 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 184 (369)
+.||+|++||+.+++++..+.+|...|.+++|+| ++.+|++|+.|++|++||++++.++..+. +|...|.++.|+|
T Consensus 169 s~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p-~~~~l~s~s~D~~i~~wd~~~~~~~~~~~---~h~~~v~~~~~~~ 244 (410)
T 1vyh_C 169 SADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFT---GHREWVRMVRPNQ 244 (410)
T ss_dssp ETTSCCCEEETTSSCEEECCCCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEE---CCSSCEEEEEECT
T ss_pred eCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEe---CCCccEEEEEECC
Confidence 9999999999999999999999999999999999 88999999999999999999999999888 7999999999999
Q ss_pred CCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee---------------
Q 017553 185 SDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--------------- 249 (369)
Q Consensus 185 ~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--------------- 249 (369)
++.+|++|+.|++|++||++++ .....+..|...|.++.|+
T Consensus 245 -~g~~l~s~s~D~~v~vwd~~~~-----------------------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~ 300 (410)
T 1vyh_C 245 -DGTLIASCSNDQTVRVWVVATK-----------------------ECKAELREHRHVVECISWAPESSYSSISEATGSE 300 (410)
T ss_dssp -TSSEEEEEETTSCEEEEETTTC-----------------------CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC
T ss_pred -CCCEEEEEcCCCeEEEEECCCC-----------------------ceeeEecCCCceEEEEEEcCcccccchhhhcccc
Confidence 8999999999999999999883 3445667888889999886
Q ss_pred -------CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccC
Q 017553 250 -------GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS 322 (369)
Q Consensus 250 -------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~ 322 (369)
+.++++|+.|+.|++||++++. .+..+..|...|.+++|+|+++ +|++++.||.|++||+.+
T Consensus 301 ~~~~~~~g~~l~sgs~D~~i~iwd~~~~~---------~~~~~~~h~~~v~~v~~~~~g~--~l~s~s~D~~i~vwd~~~ 369 (410)
T 1vyh_C 301 TKKSGKPGPFLLSGSRDKTIKMWDVSTGM---------CLMTLVGHDNWVRGVLFHSGGK--FILSCADDKTLRVWDYKN 369 (410)
T ss_dssp -------CCEEEEEETTSEEEEEETTTTE---------EEEEEECCSSCEEEEEECSSSS--CEEEEETTTEEEEECCTT
T ss_pred ccccCCCCCEEEEEeCCCeEEEEECCCCc---------eEEEEECCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECCC
Confidence 3489999999999999999876 6778888999999999999996 899999999999999988
Q ss_pred CCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecC
Q 017553 323 SPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 323 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 367 (369)
++ .+..+. +|...|++++|+|++.+|++|+.||.|++|+++
T Consensus 370 ~~--~~~~~~--~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 370 KR--CMKTLN--AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp SC--CCEEEE--CCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred Cc--eEEEEc--CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 74 445555 888999999999999999999999999999974
No 2
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.5e-51 Score=341.75 Aligned_cols=294 Identities=14% Similarity=0.175 Sum_probs=257.0
Q ss_pred eeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEE
Q 017553 25 VTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVA 103 (369)
Q Consensus 25 ~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~ 103 (369)
+.+.+++|.+.|++++|+|....++.+|++|+.|+ |+||++.+++...... ...|...|.+++|+ +++. ++++
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~---l~gh~~~v~~~~~~--~~~~-~l~s 97 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWS---LEGHQLGVVSVDIS--HTLP-IAAS 97 (321)
T ss_dssp EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEE---ECCCSSCEEEEEEC--SSSS-EEEE
T ss_pred eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeee---eccCCCCEEEEEEC--CCCC-EEEE
Confidence 34567899999999999985444578999999999 9999987765432211 12688899999988 8888 9999
Q ss_pred eecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEec
Q 017553 104 GGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFH 183 (369)
Q Consensus 104 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 183 (369)
++.|+.|++||+.+++.+..+..|...+.+++|+| ++++|++++.||.|++||+++++....+. .|...|.+++|+
T Consensus 98 ~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~g~~dg~v~i~~~~~~~~~~~~~---~~~~~v~~~~~s 173 (321)
T 3ow8_A 98 SSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSP-DSQYLATGTHVGKVNIFGVESGKKEYSLD---TRGKFILSIAYS 173 (321)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCTTCCCCEEECT-TSSEEEEECTTSEEEEEETTTCSEEEEEE---CSSSCEEEEEEC
T ss_pred EeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECC-CCCEEEEEcCCCcEEEEEcCCCceeEEec---CCCceEEEEEEC
Confidence 99999999999999999999999999999999999 89999999999999999999999988888 688999999999
Q ss_pred CCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCe
Q 017553 184 PSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNE 261 (369)
Q Consensus 184 ~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~ 261 (369)
| ++++|++++.|+.|++||++++ ..+..+..|...|.+++|+ +++|++++.|+.
T Consensus 174 p-dg~~lasg~~dg~i~iwd~~~~-----------------------~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~ 229 (321)
T 3ow8_A 174 P-DGKYLASGAIDGIINIFDIATG-----------------------KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGY 229 (321)
T ss_dssp T-TSSEEEEEETTSCEEEEETTTT-----------------------EEEEEECCCSSCCCEEEECTTSCEEEEECTTSC
T ss_pred C-CCCEEEEEcCCCeEEEEECCCC-----------------------cEEEEEcccCCceeEEEEcCCCCEEEEEcCCCe
Confidence 9 8999999999999999999983 3456778899999999997 779999999999
Q ss_pred EEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceE
Q 017553 262 IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIR 341 (369)
Q Consensus 262 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~ 341 (369)
|++||+++.+ .+..+..|...|.+++|+|+++ +|++++.|+.|++||+.++ ..+..+. +|...|.
T Consensus 230 i~iwd~~~~~---------~~~~~~~h~~~v~~~~~sp~~~--~l~s~s~D~~v~iwd~~~~--~~~~~~~--~h~~~v~ 294 (321)
T 3ow8_A 230 IKIYDVQHAN---------LAGTLSGHASWVLNVAFCPDDT--HFVSSSSDKSVKVWDVGTR--TCVHTFF--DHQDQVW 294 (321)
T ss_dssp EEEEETTTCC---------EEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTT--EEEEEEC--CCSSCEE
T ss_pred EEEEECCCcc---------eeEEEcCCCCceEEEEECCCCC--EEEEEeCCCcEEEEeCCCC--EEEEEEc--CCCCcEE
Confidence 9999998765 6777888999999999999996 8999999999999999987 5566666 7889999
Q ss_pred EEEecCCCCEEEEeecCCeEEEEecC
Q 017553 342 QTAMSYDGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 342 ~~~~s~~~~~l~s~~~dg~i~vw~~~ 367 (369)
+++|+|++++|++++.||.|++||..
T Consensus 295 ~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 295 GVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEEECTTSSEEEEEETTCCEEEEECC
T ss_pred EEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 99999999999999999999999974
No 3
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.1e-50 Score=339.97 Aligned_cols=289 Identities=18% Similarity=0.329 Sum_probs=254.4
Q ss_pred cceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCcc
Q 017553 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIP 99 (369)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~ 99 (369)
.+++...++++|.+.|++++|+| ++++|++++.|+ |+|||..++..+..+. .|...|.+++|+ |+|+
T Consensus 43 ~~~~~~~~l~gH~~~v~~~~~s~----d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~-----~~~~~v~~~~~s--~~~~- 110 (340)
T 1got_B 43 IQMRTRRTLRGHLAKIYAMHWGT----DSRLLLSASQDGKLIIWDSYTTNKVHAIP-----LRSSWVMTCAYA--PSGN- 110 (340)
T ss_dssp CCCCEEEEECCCSSCEEEEEECT----TSSEEEEEETTTEEEEEETTTCCEEEEEE-----CSSSCEEEEEEC--TTSS-
T ss_pred ccchhheeecCCCCceEEEEECC----CCCEEEEEeCCCcEEEEECCCCCcceEee-----cCCccEEEEEEC--CCCC-
Confidence 34667788999999999999999 689999999999 9999999988887776 477789999888 9998
Q ss_pred EEEEeecCCeEEEEEcCCcc----ccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCC
Q 017553 100 FLVAGGINGIIRVIDVSNEK----LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRN 175 (369)
Q Consensus 100 ~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 175 (369)
+|++|+.|+.|++|++.+++ ....+.+|.+.|.++.|++ ++ .+++++.|+.|++||+++++.+..+. +|..
T Consensus 111 ~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~-~l~s~s~d~~i~~wd~~~~~~~~~~~---~h~~ 185 (340)
T 1got_B 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DN-QIVTSSGDTTCALWDIETGQQTTTFT---GHTG 185 (340)
T ss_dssp EEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEE-TT-EEEEEETTSCEEEEETTTTEEEEEEC---CCSS
T ss_pred EEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECC-CC-cEEEEECCCcEEEEECCCCcEEEEEc---CCCC
Confidence 99999999999999997653 4566788999999999998 54 58999999999999999999998888 7999
Q ss_pred cEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEE
Q 017553 176 EVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFI 253 (369)
Q Consensus 176 ~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l 253 (369)
.|.+++|+| ++.++++|+.|+.|++||+++ ......+..|...|.+++|+ +++|
T Consensus 186 ~v~~~~~~~-~~~~l~sg~~d~~v~~wd~~~-----------------------~~~~~~~~~h~~~v~~v~~~p~~~~l 241 (340)
T 1got_B 186 DVMSLSLAP-DTRLFVSGACDASAKLWDVRE-----------------------GMCRQTFTGHESDINAICFFPNGNAF 241 (340)
T ss_dssp CEEEEEECT-TSSEEEEEETTSCEEEEETTT-----------------------CSEEEEECCCSSCEEEEEECTTSSEE
T ss_pred ceEEEEECC-CCCEEEEEeCCCcEEEEECCC-----------------------CeeEEEEcCCcCCEEEEEEcCCCCEE
Confidence 999999999 889999999999999999988 33456778899999999997 7899
Q ss_pred EEeecCCeEEEecCCCCCCCCCCCccceeeecc--CCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEe
Q 017553 254 LSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP--VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARL 331 (369)
Q Consensus 254 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 331 (369)
++++.|+.|++||+++.+ .+..+. .+...+.+++|+|+++ +|++|+.||.|++||+.+++ ....+
T Consensus 242 ~s~s~d~~v~iwd~~~~~---------~~~~~~~~~~~~~v~~~~~s~~g~--~l~~g~~d~~i~vwd~~~~~--~~~~~ 308 (340)
T 1got_B 242 ATGSDDATCRLFDLRADQ---------ELMTYSHDNIICGITSVSFSKSGR--LLLAGYDDFNCNVWDALKAD--RAGVL 308 (340)
T ss_dssp EEEETTSCEEEEETTTTE---------EEEEECCTTCCSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCC--EEEEE
T ss_pred EEEcCCCcEEEEECCCCc---------EEEEEccCCcccceEEEEECCCCC--EEEEECCCCeEEEEEcccCc--EeeEe
Confidence 999999999999998765 333332 2335799999999996 99999999999999998874 45566
Q ss_pred ecCCCccceEEEEecCCCCEEEEeecCCeEEEEe
Q 017553 332 SHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 365 (369)
Q Consensus 332 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~ 365 (369)
. +|...|.+++|+|+|.+|++|+.||.|+|||
T Consensus 309 ~--~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 309 A--GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp E--CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred e--cCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 6 8889999999999999999999999999997
No 4
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.1e-50 Score=334.72 Aligned_cols=292 Identities=19% Similarity=0.260 Sum_probs=252.1
Q ss_pred eeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEE
Q 017553 23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL 101 (369)
Q Consensus 23 ~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l 101 (369)
+++.++|++|.+.|++++|+| ++++|++++.|+ |++||+.++..+..+. .|...|.+++|+ |+++ +|
T Consensus 3 l~~~~~~~~h~~~V~~~~fsp----~~~~l~s~~~dg~v~lWd~~~~~~~~~~~-----~~~~~v~~~~~~--~~~~-~l 70 (304)
T 2ynn_A 3 LDIKKTFSNRSDRVKGIDFHP----TEPWVLTTLYSGRVELWNYETQVEVRSIQ-----VTETPVRAGKFI--ARKN-WI 70 (304)
T ss_dssp CCCEEEEEEECSCEEEEEECS----SSSEEEEEETTSEEEEEETTTTEEEEEEE-----CCSSCEEEEEEE--GGGT-EE
T ss_pred ceeEEeecCCCCceEEEEECC----CCCEEEEEcCCCcEEEEECCCCceeEEee-----ccCCcEEEEEEe--CCCC-EE
Confidence 456778899999999999999 689999999998 9999999998887777 477889999988 8888 99
Q ss_pred EEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcE-EEEeeccCCCCCcEEEE
Q 017553 102 VAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC-ILIFAGAGGHRNEVLSV 180 (369)
Q Consensus 102 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~v~~~ 180 (369)
++|+.|+.|++||+.+++.+..+.+|.+.|.+++|+| ++.+|++|+.|++|++||++++.. ...+. +|...|.++
T Consensus 71 ~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~---~h~~~v~~v 146 (304)
T 2ynn_A 71 IVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFE---GHEHFVMCV 146 (304)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEEGGGTTEEEEEEC---CCCSCEEEE
T ss_pred EEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcC-CCCEEEEECCCCeEEEEECCCCcchhhhhc---ccCCcEEEE
Confidence 9999999999999999999999999999999999999 889999999999999999998744 45555 799999999
Q ss_pred EecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee----CcEEEEe
Q 017553 181 DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL----GDFILSK 256 (369)
Q Consensus 181 ~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~l~~~ 256 (369)
+|+|.++.+|++|+.|++|++||++.... .......|...+..+.|. +.+++++
T Consensus 147 ~~~p~~~~~l~sgs~D~~v~iwd~~~~~~----------------------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 204 (304)
T 2ynn_A 147 AFNPKDPSTFASGCLDRTVKVWSLGQSTP----------------------NFTLTTGQERGVNYVDYYPLPDKPYMITA 204 (304)
T ss_dssp EECTTCTTEEEEEETTSEEEEEETTCSSC----------------------SEEEECCCTTCEEEEEECCSTTCCEEEEE
T ss_pred EECCCCCCEEEEEeCCCeEEEEECCCCCc----------------------cceeccCCcCcEEEEEEEEcCCCCEEEEE
Confidence 99996778999999999999999987321 122234566778888875 5699999
Q ss_pred ecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCC
Q 017553 257 SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQS 336 (369)
Q Consensus 257 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 336 (369)
+.|+.|++||+++++ .+..+..|...|.+++|+|+++ +|++|+.||.|++||+.++ +....+. .|
T Consensus 205 s~D~~i~iWd~~~~~---------~~~~~~~h~~~v~~~~~~p~~~--~l~s~s~Dg~i~iWd~~~~--~~~~~~~--~~ 269 (304)
T 2ynn_A 205 SDDLTIKIWDYQTKS---------CVATLEGHMSNVSFAVFHPTLP--IIISGSEDGTLKIWNSSTY--KVEKTLN--VG 269 (304)
T ss_dssp ETTSEEEEEETTTTE---------EEEEEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTC--CEEEEEC--CS
T ss_pred cCCCeEEEEeCCCCc---------cceeeCCCCCCEEEEEECCCCC--EEEEEcCCCeEEEEECCCC--ceeeecc--CC
Confidence 999999999999876 6788889999999999999996 9999999999999999988 4556666 67
Q ss_pred ccceEEEEecCCCC--EEEEeecCCeEEEEecCC
Q 017553 337 KSPIRQTAMSYDGS--TILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 337 ~~~v~~~~~s~~~~--~l~s~~~dg~i~vw~~~~ 368 (369)
...+.+++|+|++. ++++|+.|| +.+|++..
T Consensus 270 ~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~ 302 (304)
T 2ynn_A 270 LERSWCIATHPTGRKNYIASGFDNG-FTVLSLGN 302 (304)
T ss_dssp SSSEEEEEECTTCGGGCEEEEETTE-EEEEECC-
T ss_pred CccEEEEEECCCCCceEEEEecCCc-eEEEEecc
Confidence 78999999999875 577776555 77888765
No 5
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=8.2e-51 Score=345.84 Aligned_cols=302 Identities=19% Similarity=0.299 Sum_probs=257.0
Q ss_pred ccceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCc
Q 017553 20 KREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGI 98 (369)
Q Consensus 20 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~ 98 (369)
...+.+.++|++|.+.|++++|+| ++++|++|+.|+ |+|||+.+++....+. .|...|.+++|+ |+|+
T Consensus 53 ~~~~~~~~~l~gH~~~V~~~~~sp----~~~~l~s~s~D~~v~iWd~~~~~~~~~~~-----~h~~~v~~~~~s--~~g~ 121 (380)
T 3iz6_a 53 PTDLVCCRTLQGHSGKVYSLDWTP----EKNWIVSASQDGRLIVWNALTSQKTHAIK-----LHCPWVMECAFA--PNGQ 121 (380)
T ss_dssp CCCCEEEEEECCCSSCEEEEEECT----TSSCEEEEETTSEEEEEETTTTEEEEEEE-----CCCTTCCCCEEC--TTSS
T ss_pred cceeEEeecccccccEEEEEEEcC----CCCEEEEEeCCCeEEEEECCCCccceEEe-----cCCCCEEEEEEC--CCCC
Confidence 345667788999999999999999 689999999999 9999999998888777 477788889888 9999
Q ss_pred cEEEEeecCCeEEEEEcCCc-------cccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeec--
Q 017553 99 PFLVAGGINGIIRVIDVSNE-------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAG-- 169 (369)
Q Consensus 99 ~~l~~~~~dg~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-- 169 (369)
+|++|+.|+.|++||+.+. .....+.+|.+.|.++.|.|.++..|++|+.|++|++||+++++.+..+..
T Consensus 122 -~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~ 200 (380)
T 3iz6_a 122 -SVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEF 200 (380)
T ss_dssp -EEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCS
T ss_pred -EEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeeccc
Confidence 9999999999999998653 235667899999999999996677899999999999999999998887732
Q ss_pred cCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee
Q 017553 170 AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL 249 (369)
Q Consensus 170 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 249 (369)
..+|...|.+++|++.++++|++|+.|++|++||++.. ...+..+.+|...|.+++|+
T Consensus 201 ~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~----------------------~~~~~~~~~h~~~v~~v~~~ 258 (380)
T 3iz6_a 201 PSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT----------------------SRAVRTYHGHEGDINSVKFF 258 (380)
T ss_dssp SSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTT----------------------CCCCEEECCCSSCCCEEEEC
T ss_pred CCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCC----------------------CcceEEECCcCCCeEEEEEe
Confidence 23799999999998768899999999999999999852 23456778899999999997
Q ss_pred --CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccC-------CCCCeeEEEEeecCCccEEEEecCCCeEEEEEc
Q 017553 250 --GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV-------PECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL 320 (369)
Q Consensus 250 --~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~ 320 (369)
+++|++++.|+.|++||+++++ .+..+.. +...+.+++|+|+++ +|++|+.||.|++||+
T Consensus 259 p~~~~l~s~s~D~~i~lwd~~~~~---------~~~~~~~~~~~~~~~~~~v~~~~~s~~g~--~l~~g~~dg~i~vwd~ 327 (380)
T 3iz6_a 259 PDGQRFGTGSDDGTCRLFDMRTGH---------QLQVYNREPDRNDNELPIVTSVAFSISGR--LLFAGYSNGDCYVWDT 327 (380)
T ss_dssp TTSSEEEEECSSSCEEEEETTTTE---------EEEEECCCCSSSCCSSCSCSEEEECSSSS--EEEEECTTSCEEEEET
T ss_pred cCCCeEEEEcCCCeEEEEECCCCc---------EEEEecccccccccccCceEEEEECCCCC--EEEEEECCCCEEEEEC
Confidence 7799999999999999999875 2332222 223588999999996 9999999999999999
Q ss_pred cCCCceeEEEee--cCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 321 QSSPPVLIARLS--HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 321 ~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
..++ ....+. ..+|.+.|++++|+|+|++|++|+.||.|++|++..
T Consensus 328 ~~~~--~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 328 LLAE--MVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp TTCC--EEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred CCCc--eEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 8874 333442 247889999999999999999999999999999864
No 6
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2e-49 Score=333.71 Aligned_cols=290 Identities=19% Similarity=0.265 Sum_probs=252.5
Q ss_pred ceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccE
Q 017553 22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF 100 (369)
Q Consensus 22 ~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~ 100 (369)
..+....|++|.+.|++++|+| ++.+||+++.|+ |+|||..++.....+. .+...|.+++|+ |+|. +
T Consensus 53 ~~~~~~~l~gH~~~V~~~~~s~----d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~-----~~~~~v~~~~~s--p~g~-~ 120 (354)
T 2pbi_B 53 VMKTRRTLKGHGNKVLCMDWCK----DKRRIVSSSQDGKVIVWDSFTTNKEHAVT-----MPCTWVMACAYA--PSGC-A 120 (354)
T ss_dssp CCCEEEEEECCSSCEEEEEECT----TSSEEEEEETTSEEEEEETTTCCEEEEEE-----CSSSCCCEEEEC--TTSS-E
T ss_pred ccEEEEEecCCCCeEEEEEECC----CCCEEEEEeCCCeEEEEECCCCCcceEEe-----cCCCCEEEEEEC--CCCC-E
Confidence 3456778899999999999999 689999999999 9999998888777766 466788888888 9999 9
Q ss_pred EEEeecCCeEEEEEcCCc------cccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCC
Q 017553 101 LVAGGINGIIRVIDVSNE------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR 174 (369)
Q Consensus 101 l~~~~~dg~i~vwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 174 (369)
|++|+.|+.+++|++... .....+.+|...|.+++|+| ++..|++++.|++|++||+++++.+..+. +|.
T Consensus 121 lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~s~D~~v~lwd~~~~~~~~~~~---~h~ 196 (354)
T 2pbi_B 121 IACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTN-SDMQILTASGDGTCALWDVESGQLLQSFH---GHG 196 (354)
T ss_dssp EEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEE---CCS
T ss_pred EEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEc---CCC
Confidence 999999999999998643 34566778999999999999 88899999999999999999999999988 799
Q ss_pred CcEEEEEecCC-CceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--Cc
Q 017553 175 NEVLSVDFHPS-DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GD 251 (369)
Q Consensus 175 ~~v~~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~ 251 (369)
..|.+++|+|. ++++|++|+.|++|++||+++ ...+..+..|...|.+++|+ ++
T Consensus 197 ~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~-----------------------~~~~~~~~~h~~~v~~v~~~p~~~ 253 (354)
T 2pbi_B 197 ADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS-----------------------GQCVQAFETHESDVNSVRYYPSGD 253 (354)
T ss_dssp SCEEEEEECCCSSCCEEEEEETTSCEEEEETTT-----------------------CCEEEEECCCSSCEEEEEECTTSS
T ss_pred CCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC-----------------------CcEEEEecCCCCCeEEEEEeCCCC
Confidence 99999999873 358999999999999999998 33466778899999999997 78
Q ss_pred EEEEeecCCeEEEecCCCCCCCCCCCccceeeeccC--CCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEE
Q 017553 252 FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV--PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA 329 (369)
Q Consensus 252 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 329 (369)
++++++.|+.|++||++..+ .+..+.. +...+.+++|+|+++ +|++|+.|+.|++||+.+++ .+.
T Consensus 254 ~l~s~s~D~~v~lwd~~~~~---------~~~~~~~~~~~~~~~~~~~s~~g~--~l~~g~~d~~i~vwd~~~~~--~~~ 320 (354)
T 2pbi_B 254 AFASGSDDATCRLYDLRADR---------EVAIYSKESIIFGASSVDFSLSGR--LLFAGYNDYTINVWDVLKGS--RVS 320 (354)
T ss_dssp EEEEEETTSCEEEEETTTTE---------EEEEECCTTCCSCEEEEEECTTSS--EEEEEETTSCEEEEETTTCS--EEE
T ss_pred EEEEEeCCCeEEEEECCCCc---------EEEEEcCCCcccceeEEEEeCCCC--EEEEEECCCcEEEEECCCCc--eEE
Confidence 99999999999999998764 2333322 234688999999996 99999999999999998884 455
Q ss_pred EeecCCCccceEEEEecCCCCEEEEeecCCeEEEEe
Q 017553 330 RLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 365 (369)
Q Consensus 330 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~ 365 (369)
.+. +|...|++++|+|+|++|++|+.||.|+||+
T Consensus 321 ~l~--~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 321 ILF--GHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEC--CCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEE--CCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 555 8889999999999999999999999999996
No 7
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=5.1e-50 Score=334.90 Aligned_cols=288 Identities=13% Similarity=0.121 Sum_probs=232.9
Q ss_pred ccCCcCeEEEEEeeccCCCccEEEEecCCcEEEEEecCCc-------eeEEEeeeccCCcccceeEEEeeecCCCccEEE
Q 017553 30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGG-------VIAALQSYVDEDKEESFYTVSWACNVDGIPFLV 102 (369)
Q Consensus 30 ~~h~~~v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~ 102 (369)
..|...|.+++|+| +|++|++++++.+++||..... ...... .....++..|.+++|+ |++ .|+
T Consensus 27 ~~~~~~v~~~~fs~----dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s--~d~--~l~ 97 (344)
T 4gqb_B 27 ACMERQLEAARYRS----DGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFC-SAGVQTEAGVADLTWV--GER--GIL 97 (344)
T ss_dssp SSCCSEEEEEEECT----TSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGC-SEEEEESSCEEEEEEE--TTT--EEE
T ss_pred ccccCCEEEEEECC----CCCEEEEEeCCceEEeeceeeeeccccccCCccee-eeeeccCCCEEEEEEe--CCC--eEE
Confidence 46788899999999 6999999986668888732100 000000 0001245679999998 876 588
Q ss_pred EeecCCeEEEEEcCCccccce----eeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEE
Q 017553 103 AGGINGIIRVIDVSNEKLHKS----FVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVL 178 (369)
Q Consensus 103 ~~~~dg~i~vwd~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~ 178 (369)
+|+.||+|++||+.+++.+.. +.+|.+.|++++|+| ++++|++|+.|++|++||+++++++..+. +|...|.
T Consensus 98 ~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~---~h~~~V~ 173 (344)
T 4gqb_B 98 VASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYR---AHAAQVT 173 (344)
T ss_dssp EEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEEC---CCSSCEE
T ss_pred EEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEc---CcCCceE
Confidence 999999999999998876544 347999999999999 89999999999999999999999999988 8999999
Q ss_pred EEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeee--ccCCCceeeeeee---CcEE
Q 017553 179 SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA--SVHSNYVDCNRWL---GDFI 253 (369)
Q Consensus 179 ~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~---~~~l 253 (369)
+++|+|++..+|++++.|++|++||+++++ +...+ ..|...+.+++|+ ++++
T Consensus 174 ~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~p~~~~~l 230 (344)
T 4gqb_B 174 CVAASPHKDSVFLSCSEDNRILLWDTRCPK-----------------------PASQIGCSAPGYLPTSLAWHPQQSEVF 230 (344)
T ss_dssp EEEECSSCTTEEEEEETTSCEEEEETTSSS-----------------------CEEECC----CCCEEEEEECSSCTTEE
T ss_pred EEEecCCCCCceeeeccccccccccccccc-----------------------eeeeeecceeeccceeeeecCCCCcce
Confidence 999999555789999999999999999843 22222 3455678889886 5588
Q ss_pred EEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeec
Q 017553 254 LSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSH 333 (369)
Q Consensus 254 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 333 (369)
++|+.|+.|++||+++++ .+..+..|...|++++|+|++. .+|++|+.|+.|++||+.+++ +..+.
T Consensus 231 ~sg~~dg~v~~wd~~~~~---------~~~~~~~h~~~v~~v~fsp~g~-~~lasgs~D~~i~vwd~~~~~---~~~~~- 296 (344)
T 4gqb_B 231 VFGDENGTVSLVDTKSTS---------CVLSSAVHSQCVTGLVFSPHSV-PFLASLSEDCSLAVLDSSLSE---LFRSQ- 296 (344)
T ss_dssp EEEETTSEEEEEESCC-----------CCEEEECCSSCEEEEEECSSSS-CCEEEEETTSCEEEECTTCCE---EEEEC-
T ss_pred EEeccCCcEEEEECCCCc---------EEEEEcCCCCCEEEEEEccCCC-eEEEEEeCCCeEEEEECCCCc---EEEEc-
Confidence 999999999999999876 5778888999999999999985 489999999999999998873 23344
Q ss_pred CCCccceEEEEecCCCC-EEEEeecCCeEEEEecCC
Q 017553 334 AQSKSPIRQTAMSYDGS-TILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 334 ~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~vw~~~~ 368 (369)
+|.+.|++++|+|+++ +|++|+.||.|++|++.+
T Consensus 297 -~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 297 -AHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPT 331 (344)
T ss_dssp -CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred -CCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence 8889999999999986 677999999999999875
No 8
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=5.9e-49 Score=330.03 Aligned_cols=314 Identities=17% Similarity=0.243 Sum_probs=252.5
Q ss_pred cceeeeeecccCCc-CeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCc
Q 017553 21 REYRVTNKLQEGKR-PLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGI 98 (369)
Q Consensus 21 ~~~~~~~~~~~h~~-~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~ 98 (369)
..+++..++++|.. .|++++|+| +|++||+++.|+ |+|||+.++....... ....|...|.+++|+ |+|+
T Consensus 3 ~~~~~~~~~~~h~~~~v~~l~~sp----~g~~las~~~D~~i~iw~~~~~~~~~~~~--~~~~h~~~v~~~~~s--p~g~ 74 (345)
T 3fm0_A 3 DSLVLLGRVPAHPDSRCWFLAWNP----AGTLLASCGGDRRIRIWGTEGDSWICKSV--LSEGHQRTVRKVAWS--PCGN 74 (345)
T ss_dssp -CEEEEEEECCSTTSCEEEEEECT----TSSCEEEEETTSCEEEEEEETTEEEEEEE--ECSSCSSCEEEEEEC--TTSS
T ss_pred ccEEEeeeecCCCCCcEEEEEECC----CCCEEEEEcCCCeEEEEEcCCCcceeeee--eccccCCcEEEEEEC--CCCC
Confidence 35677888999988 999999999 689999999999 9999988775432221 123688899999998 9998
Q ss_pred cEEEEeecCCeEEEEEcCCc--cccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCc
Q 017553 99 PFLVAGGINGIIRVIDVSNE--KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNE 176 (369)
Q Consensus 99 ~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 176 (369)
+|++|+.|+.|++|++.++ +.+..+.+|...|.+++|+| ++++|++|+.|+.|++||++++.....+....+|...
T Consensus 75 -~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~ 152 (345)
T 3fm0_A 75 -YLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQD 152 (345)
T ss_dssp -EEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSC
T ss_pred -EEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCC
Confidence 9999999999999998766 45778899999999999999 8999999999999999999877543333333379999
Q ss_pred EEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEE
Q 017553 177 VLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFIL 254 (369)
Q Consensus 177 v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~ 254 (369)
|.+++|+| ++.+|++++.|+.|++||++... ......+.+|...|.+++|+ +++|+
T Consensus 153 v~~~~~~p-~~~~l~s~s~d~~i~~w~~~~~~---------------------~~~~~~~~~h~~~v~~l~~sp~g~~l~ 210 (345)
T 3fm0_A 153 VKHVVWHP-SQELLASASYDDTVKLYREEEDD---------------------WVCCATLEGHESTVWSLAFDPSGQRLA 210 (345)
T ss_dssp EEEEEECS-SSSCEEEEETTSCEEEEEEETTE---------------------EEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred eEEEEECC-CCCEEEEEeCCCcEEEEEecCCC---------------------EEEEEEecCCCCceEEEEECCCCCEEE
Confidence 99999999 88999999999999999998732 12345678899999999997 78999
Q ss_pred EeecCCeEEEecCCCCCCCCCC------CccceeeeccC-CCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCc--
Q 017553 255 SKSVDNEIVLWEPKMKEQSPGE------GTADILQKYPV-PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP-- 325 (369)
Q Consensus 255 ~~~~d~~i~i~d~~~~~~~~~~------~~~~~~~~~~~-~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~-- 325 (369)
+++.|+.|++||.......... .....+..+.. |...|.+++|+|++. .|++++.|+.|++|+......
T Consensus 211 s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~--~l~s~~~d~~i~vw~~~~~~~~~ 288 (345)
T 3fm0_A 211 SCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTG--ALATACGDDAIRVFQEDPNSDPQ 288 (345)
T ss_dssp EEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTC--CEEEEETTSCEEEEEECTTSCTT
T ss_pred EEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCC--EEEEEeCCCeEEEEEeCCCCCcc
Confidence 9999999999997543321110 11122333333 678899999999996 899999999999999876421
Q ss_pred --eeEE-EeecCCCccceEEEEecCCC-CEEEEeecCCeEEEEecCC
Q 017553 326 --VLIA-RLSHAQSKSPIRQTAMSYDG-STILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 326 --~~~~-~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~vw~~~~ 368 (369)
.... .....+|...|++++|+|++ .+||+|+.||.|++|++.+
T Consensus 289 ~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~ 335 (345)
T 3fm0_A 289 QPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQR 335 (345)
T ss_dssp SCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC
T ss_pred eeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecC
Confidence 1111 11234788999999999998 5999999999999999865
No 9
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.8e-50 Score=338.41 Aligned_cols=290 Identities=16% Similarity=0.172 Sum_probs=232.7
Q ss_pred ccCCcCeEEEEEeeccCCCccEEEEecC------Cc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEE
Q 017553 30 QEGKRPLYAVVFNFIDSRYFNVFATVGG------NR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLV 102 (369)
Q Consensus 30 ~~h~~~v~~~~~s~~~~~~~~~la~~~~------~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~ 102 (369)
..|+..|++++||| ||++||+++. |+ |++|+..++.....+... ...|...|.+++|+ |++. ++
T Consensus 39 ~~H~~~V~~v~fSp----DG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~-~~~~~~~V~~~~~s--~d~~--~l 109 (357)
T 4g56_B 39 ACMEVQIGAVRYRR----DGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTA-GVQTEAGVTDVAWV--SEKG--IL 109 (357)
T ss_dssp -CCCSEEEEEEECS----SSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSE-EEECSSCEEEEEEE--TTTE--EE
T ss_pred ccccCCEEEEEECC----CCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecc-cCCCCCCEEEEEEc--CCCC--EE
Confidence 57999999999999 7999999997 55 888887666543322211 11477789999998 8886 66
Q ss_pred EeecCCeEEEEEcCCccccc----eeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEE
Q 017553 103 AGGINGIIRVIDVSNEKLHK----SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVL 178 (369)
Q Consensus 103 ~~~~dg~i~vwd~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~ 178 (369)
+++.||+|++||+.+++... ...+|.+.|.+++|+| ++++|++|+.|+.|++||+++++.+..+. +|...|.
T Consensus 110 ~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~sgs~dg~v~iwd~~~~~~~~~~~---~h~~~v~ 185 (357)
T 4g56_B 110 VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-DGTQAVSGGKDFSVKVWDLSQKAVLKSYN---AHSSEVN 185 (357)
T ss_dssp EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTTEEEEEEC---CCSSCEE
T ss_pred EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEc---CCCCCEE
Confidence 77889999999998876543 2347999999999999 89999999999999999999999999988 7999999
Q ss_pred EEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee---CcEEEE
Q 017553 179 SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILS 255 (369)
Q Consensus 179 ~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~ 255 (369)
+++|+|++..++++++.|++|++||+++++.. .......|...+.+++|+ +.++++
T Consensus 186 ~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~---------------------~~~~~~~~~~~v~~v~~sp~~~~~la~ 244 (357)
T 4g56_B 186 CVAACPGKDTIFLSCGEDGRILLWDTRKPKPA---------------------TRIDFCASDTIPTSVTWHPEKDDTFAC 244 (357)
T ss_dssp EEEECTTCSSCEEEEETTSCEEECCTTSSSCB---------------------CBCCCTTCCSCEEEEEECTTSTTEEEE
T ss_pred EEEEccCCCceeeeeccCCceEEEECCCCcee---------------------eeeeeccccccccchhhhhcccceEEE
Confidence 99999955568999999999999999884211 112334567789999996 568999
Q ss_pred eecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCC
Q 017553 256 KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQ 335 (369)
Q Consensus 256 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 335 (369)
++.|+.|++||+++.+ .+..+..+...|++++|+|++. .+|++|+.|+.|+|||+++++ .+..+ +
T Consensus 245 g~~d~~i~~wd~~~~~---------~~~~~~~~~~~v~~l~~sp~~~-~~lasgs~D~~i~iwd~~~~~--~~~~~---~ 309 (357)
T 4g56_B 245 GDETGNVSLVNIKNPD---------SAQTSAVHSQNITGLAYSYHSS-PFLASISEDCTVAVLDADFSE--VFRDL---S 309 (357)
T ss_dssp EESSSCEEEEESSCGG---------GCEEECCCSSCEEEEEECSSSS-CCEEEEETTSCEEEECTTSCE--EEEEC---C
T ss_pred eecccceeEEECCCCc---------EeEEEeccceeEEEEEEcCCCC-CEEEEEeCCCEEEEEECCCCc--EeEEC---C
Confidence 9999999999999876 5677888899999999999985 489999999999999999873 33333 7
Q ss_pred CccceEEEEecC-CCCEEEEeecCCeEEEEecCC
Q 017553 336 SKSPIRQTAMSY-DGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 336 ~~~~v~~~~~s~-~~~~l~s~~~dg~i~vw~~~~ 368 (369)
|...|++++|+| ++.+|++|+.||.|++|++.+
T Consensus 310 H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 310 HRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp CSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred CCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence 889999999998 799999999999999999864
No 10
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=8.7e-49 Score=325.38 Aligned_cols=295 Identities=20% Similarity=0.346 Sum_probs=247.1
Q ss_pred ccceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCce-----eEEEeeeccCCcccceeEEEeee
Q 017553 20 KREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGV-----IAALQSYVDEDKEESFYTVSWAC 93 (369)
Q Consensus 20 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~ 93 (369)
...+.+..+|++|.+.|++++|+|. .+++|++++.|+ |++|++..... +..+. .|...|.+++|+
T Consensus 4 ~~~~~l~~~l~gH~~~V~~l~~~~~---~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~-----~h~~~v~~~~~s- 74 (319)
T 3frx_A 4 NEVLVLRGTLEGHNGWVTSLATSAG---QPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK-----GHSHIVQDCTLT- 74 (319)
T ss_dssp CEEEEEEEEECCCSSCEEEEEECSS---CTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEE-----CCSSCEEEEEEC-
T ss_pred ceEEEEEEEEccccceEEEEEccCC---CccEEEEecCCccEEEecCCCCCccccccceEEe-----CCcccEEEEEEC-
Confidence 3456778889999999999999993 258999999999 99999864332 23333 688899999998
Q ss_pred cCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCC
Q 017553 94 NVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGH 173 (369)
Q Consensus 94 ~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 173 (369)
|+|+ +|++|+.|++|++||+.+++.+..+.+|...|.+++|+| ++.+|++|+.|++|++||++ ++++..+. +|
T Consensus 75 -~dg~-~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~D~~i~vwd~~-~~~~~~~~---~h 147 (319)
T 3frx_A 75 -ADGA-YALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIK-GQCLATLL---GH 147 (319)
T ss_dssp -TTSS-EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSCEEEEEETTSCEEEEETT-SCEEEEEC---CC
T ss_pred -CCCC-EEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECC-CCeEEEEe---cc
Confidence 9998 999999999999999999999999999999999999999 89999999999999999996 45666666 79
Q ss_pred CCcEEEEEecCC-----CceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeee
Q 017553 174 RNEVLSVDFHPS-----DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW 248 (369)
Q Consensus 174 ~~~v~~~~~~~~-----~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 248 (369)
...|.+++|.|. ++..+++++.|+.|++||++.. .....+.+|...|.+++|
T Consensus 148 ~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-----------------------~~~~~~~~h~~~v~~~~~ 204 (319)
T 3frx_A 148 NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF-----------------------QIEADFIGHNSNINTLTA 204 (319)
T ss_dssp SSCEEEEEECCC------CCEEEEEETTSCEEEEETTTT-----------------------EEEEEECCCCSCEEEEEE
T ss_pred CCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc-----------------------hhheeecCCCCcEEEEEE
Confidence 999999999983 2348999999999999999883 334566789999999999
Q ss_pred e--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCce
Q 017553 249 L--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPV 326 (369)
Q Consensus 249 ~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 326 (369)
+ +++|++++.|+.|++||+.+.+ .+..+..+ ..+.+++|+|++. ++++++. +.+++|++... .
T Consensus 205 sp~g~~l~s~~~dg~i~iwd~~~~~---------~~~~~~~~-~~v~~~~~sp~~~--~la~~~~-~~i~v~~~~~~--~ 269 (319)
T 3frx_A 205 SPDGTLIASAGKDGEIMLWNLAAKK---------AMYTLSAQ-DEVFSLAFSPNRY--WLAAATA-TGIKVFSLDPQ--Y 269 (319)
T ss_dssp CTTSSEEEEEETTCEEEEEETTTTE---------EEEEEECC-SCEEEEEECSSSS--EEEEEET-TEEEEEEETTE--E
T ss_pred cCCCCEEEEEeCCCeEEEEECCCCc---------EEEEecCC-CcEEEEEEcCCCC--EEEEEcC-CCcEEEEeCcC--e
Confidence 7 7899999999999999999876 45555543 6799999999996 7777665 45999999876 3
Q ss_pred eEEEeec------CCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 327 LIARLSH------AQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 327 ~~~~~~~------~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
....+.. ..+...+.+++|+|||++|++|+.||.|+|||+.+
T Consensus 270 ~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 270 LVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp EEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred eeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 3333331 13456799999999999999999999999999865
No 11
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-48 Score=323.27 Aligned_cols=306 Identities=16% Similarity=0.221 Sum_probs=236.0
Q ss_pred ceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccE
Q 017553 22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF 100 (369)
Q Consensus 22 ~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~ 100 (369)
.+++.+.+++|.++|++++|+| .+||+++.|+ |++||+..+... .+..+....|...|.+++|+ |+++ +
T Consensus 3 ~~~~~~~~~~h~~~v~~~~~s~------~~las~~~D~~i~lw~~~~~~~~-~~~~~~~~~h~~~v~~v~~s--p~~~-~ 72 (330)
T 2hes_X 3 SINLIKSLKLYKEKIWSFDFSQ------GILATGSTDRKIKLVSVKYDDFT-LIDVLDETAHKKAIRSVAWR--PHTS-L 72 (330)
T ss_dssp CCEEEEEEECCSSCEEEEEEET------TEEEEEESSSCEEEEECSSSCCE-EEEEECTTCCCSCEEEEEEC--TTSS-E
T ss_pred ccccceeeccCCCceeeeccCC------CEEEEEcCCCEEEEEEecCCCeE-EEEEEecCCccCCEEEEEEC--CCCC-E
Confidence 4567778999999999999998 2999999998 999998765321 11111122388899999998 8998 9
Q ss_pred EEEeecCCeEEEEEcCC-------ccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCC----cEEEEeec
Q 017553 101 LVAGGINGIIRVIDVSN-------EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG----ICILIFAG 169 (369)
Q Consensus 101 l~~~~~dg~i~vwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~----~~~~~~~~ 169 (369)
|++|+.|++|++||+.. .+.+..+.+|...|.+++|+| ++++|++|+.|++|++||++.. +++..+.
T Consensus 73 las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~- 150 (330)
T 2hes_X 73 LAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEEYECISVLQ- 150 (330)
T ss_dssp EEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCCCEEEEEEC-
T ss_pred EEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEec-
Confidence 99999999999999853 345677889999999999999 8999999999999999999432 4455565
Q ss_pred cCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee
Q 017553 170 AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL 249 (369)
Q Consensus 170 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 249 (369)
+|...|.+++|+| ++.+|++++.|++|++||.+.+. ..++..+.+|...|.+++|+
T Consensus 151 --~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~~---------------------~~~~~~~~~h~~~v~~~~~~ 206 (330)
T 2hes_X 151 --EHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDD---------------------WECVAVLNGHEGTVWSSDFD 206 (330)
T ss_dssp --CCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETTE---------------------EEEEEEECCCSSCEEEEEEC
T ss_pred --cCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCC---------------------eeEEEEccCCCCcEEEEEec
Confidence 7999999999999 88999999999999999987631 13456778999999999997
Q ss_pred C----cEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccC-CCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCC
Q 017553 250 G----DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV-PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP 324 (369)
Q Consensus 250 ~----~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~ 324 (369)
+ .++++++.|+.|++||++....... ........+.. |...|.+++|++++ +|++++.||.|++||..+++
T Consensus 207 ~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~-~~~~~~~~~~~~h~~~v~~v~~s~~~---~l~s~~~dg~v~iw~~~~~~ 282 (330)
T 2hes_X 207 KTEGVFRLCSGSDDSTVRVWKYMGDDEDDQ-QEWVCEAILPDVHKRQVYNVAWGFNG---LIASVGADGVLAVYEEVDGE 282 (330)
T ss_dssp CSSSSCEEEEEETTSCEEEEEEEEECTTSC-EEEEEEEECCSCCSSCEEEEEECTTS---CEEEEETTSCEEEEEEETTE
T ss_pred CCCCeeEEEEEeCCCeEEEEEecCCCcccc-ceeEEeeecccccccceEEEEEcCCC---EEEEEeCCCEEEEEEcCCCc
Confidence 3 4799999999999999976532110 01113344444 77899999999765 79999999999999998774
Q ss_pred ceeEEEeecCCCcc-ceEEEEecC--CCCEEEEeecCCeEEEEecCC
Q 017553 325 PVLIARLSHAQSKS-PIRQTAMSY--DGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 325 ~~~~~~~~~~~~~~-~v~~~~~s~--~~~~l~s~~~dg~i~vw~~~~ 368 (369)
....... ..+|.. .|.+++|+| ++++|++|+.||.|++|++++
T Consensus 283 ~~~~~~~-~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 283 WKVFAKR-ALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEEEEE-SCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred eEEEecc-ccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 3223222 125666 899999999 789999999999999999875
No 12
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.4e-47 Score=317.80 Aligned_cols=294 Identities=23% Similarity=0.411 Sum_probs=252.6
Q ss_pred ccceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCc
Q 017553 20 KREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGI 98 (369)
Q Consensus 20 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~ 98 (369)
.+.+.+..++.+|.+.|++++|+| ++++||+++.|+ |++|+..+++....+. .|...|.+++|+ |+++
T Consensus 10 ~~~~~~~~~~~gh~~~v~~~~~s~----~~~~l~s~~~dg~i~iw~~~~~~~~~~~~-----~h~~~v~~~~~~--~~~~ 78 (312)
T 4ery_A 10 KPNYALKFTLAGHTKAVSSVKFSP----NGEWLASSSADKLIKIWGAYDGKFEKTIS-----GHKLGISDVAWS--SDSN 78 (312)
T ss_dssp CCCCEEEEEECCCSSCEEEEEECT----TSSEEEEEETTSCEEEEETTTCCEEEEEC-----CCSSCEEEEEEC--TTSS
T ss_pred CCCceeEEEEcccCCcEEEEEECC----CCCEEEEeeCCCeEEEEeCCCcccchhhc-----cCCCceEEEEEc--CCCC
Confidence 455778888999999999999999 689999999998 9999998888777766 578889999998 8998
Q ss_pred cEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEE
Q 017553 99 PFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVL 178 (369)
Q Consensus 99 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~ 178 (369)
+|++|+.||.|++||+.+++.+..+.+|...|.+++|+| ++++|++|+.|+.|++||+++++.+..+. .|..+|.
T Consensus 79 -~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~~v~ 153 (312)
T 4ery_A 79 -LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLP---AHSDPVS 153 (312)
T ss_dssp -EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCEEEEEC---CCSSCEE
T ss_pred -EEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCEEEEEec---CCCCcEE
Confidence 999999999999999999999999999999999999999 88999999999999999999999988887 7999999
Q ss_pred EEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceee-eccCCCceeeeeee--CcEEEE
Q 017553 179 SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI-ASVHSNYVDCNRWL--GDFILS 255 (369)
Q Consensus 179 ~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~--~~~l~~ 255 (369)
+++|+| ++.+|++++.|+.|++||+++++ .+.. ...+...+.+++|+ ++++++
T Consensus 154 ~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~ 209 (312)
T 4ery_A 154 AVHFNR-DGSLIVSSSYDGLCRIWDTASGQ-----------------------CLKTLIDDDNPPVSFVKFSPNGKYILA 209 (312)
T ss_dssp EEEECT-TSSEEEEEETTSCEEEEETTTCC-----------------------EEEEECCSSCCCEEEEEECTTSSEEEE
T ss_pred EEEEcC-CCCEEEEEeCCCcEEEEECCCCc-----------------------eeeEEeccCCCceEEEEECCCCCEEEE
Confidence 999999 88999999999999999998842 1222 23456678888887 789999
Q ss_pred eecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCee--EEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeec
Q 017553 256 KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIW--FIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSH 333 (369)
Q Consensus 256 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 333 (369)
++.|+.|++||+++.+ .+..+..+..... ...+++.+. .+|++|+.||.|++||+.++ ..+..+.
T Consensus 210 ~~~d~~i~iwd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~--~~~~~~~- 276 (312)
T 4ery_A 210 ATLDNTLKLWDYSKGK---------CLKTYTGHKNEKYCIFANFSVTGG-KWIVSGSEDNLVYIWNLQTK--EIVQKLQ- 276 (312)
T ss_dssp EETTTEEEEEETTTTE---------EEEEECSSCCSSSCCCEEEECSSS-CEEEECCTTSCEEEEETTTC--CEEEEEC-
T ss_pred EcCCCeEEEEECCCCc---------EEEEEEecCCceEEEEEEEEeCCC-cEEEEECCCCEEEEEECCCc--hhhhhhh-
Confidence 9999999999998876 4556655554332 334553332 48999999999999999988 4566666
Q ss_pred CCCccceEEEEecCCCCEEEEee--cCCeEEEEecC
Q 017553 334 AQSKSPIRQTAMSYDGSTILSCC--EDGAIWRWDAI 367 (369)
Q Consensus 334 ~~~~~~v~~~~~s~~~~~l~s~~--~dg~i~vw~~~ 367 (369)
+|...|.+++|+|++++|++++ .|+.|++|+..
T Consensus 277 -~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 277 -GHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp -CCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred -ccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 8889999999999999999987 69999999964
No 13
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.9e-48 Score=330.28 Aligned_cols=336 Identities=41% Similarity=0.781 Sum_probs=265.1
Q ss_pred cccCCcCeEEEEEeeccCC-CccEEEEecCCcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCC--CccEEEEee
Q 017553 29 LQEGKRPLYAVVFNFIDSR-YFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD--GIPFLVAGG 105 (369)
Q Consensus 29 ~~~h~~~v~~~~~s~~~~~-~~~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--g~~~l~~~~ 105 (369)
..+|.++|++++|+|..+. ...++++++.+.|++||+.+++.+..+..+....+...|.+++|++..+ |. +|++|+
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~~ 92 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHP-LLAVAG 92 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCE-EEEEEE
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCC-EEEEec
Confidence 3589999999999983110 2346666666779999999999988888887777889999999993322 66 999999
Q ss_pred cCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCC
Q 017553 106 INGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS 185 (369)
Q Consensus 106 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 185 (369)
.||.|++||+.+++.+..+.+|...|.+++|+|.++.+|++++.||.|++||+++++.+..+....+|...|.+++|+|
T Consensus 93 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~- 171 (366)
T 3k26_A 93 SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL- 171 (366)
T ss_dssp TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECT-
T ss_pred CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECC-
Confidence 9999999999999999999999999999999997788999999999999999999999888843337999999999999
Q ss_pred CceEEEEEeeCCcEEEEEccCceeeeeeee--ecc--CCCCCC-CCceeecceeeeccCCCceeeeeeeCcEEEEeecCC
Q 017553 186 DIYRIASCGMDNTVKIWSMKEFWTYVEKSF--TWT--DLPSKF-PTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDN 260 (369)
Q Consensus 186 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~--~~~--~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~ 260 (369)
++.+|++++.|+.|++||++++........ .+. ...... ..............|...|.++.|+++++++++.|+
T Consensus 172 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~ 251 (366)
T 3k26_A 172 LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCEN 251 (366)
T ss_dssp TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSS
T ss_pred CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCC
Confidence 889999999999999999998532211110 000 000000 001111123345569999999999999999999999
Q ss_pred eEEEecCCCCCCC-----CCCCccceeeeccCCCCCeeEEEEeec--CCccEEEEecCCCeEEEEEccCCCce--eEEEe
Q 017553 261 EIVLWEPKMKEQS-----PGEGTADILQKYPVPECDIWFIKFSCD--FHYNAAAIGNREGKIFVWELQSSPPV--LIARL 331 (369)
Q Consensus 261 ~i~i~d~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~ 331 (369)
.|++||+++.... ........+..+..|...+.+++|+|+ ++ +|++++.||.|++||+.+++.. ....+
T Consensus 252 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~--~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 329 (366)
T 3k26_A 252 AIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQK--MLALGNQVGKLYVWDLEVEDPHKAKCTTL 329 (366)
T ss_dssp EEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSS--EEEEECTTSCEEEEECCSSSGGGCEEEEE
T ss_pred EEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCc--EEEEEecCCcEEEEECCCCCCccccceEE
Confidence 9999999876531 111222356777788889999999999 64 9999999999999999987643 34455
Q ss_pred ecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 332 SHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 332 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
....|...|++++|+|++++|++++.||.|++||+.+
T Consensus 330 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 330 THHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp CCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred cccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 5323378999999999999999999999999999864
No 14
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.1e-47 Score=322.36 Aligned_cols=298 Identities=16% Similarity=0.262 Sum_probs=243.1
Q ss_pred cceeeeeecccCCcCeEEEEE-----eeccCCCccEEEEecCCc-EEEEEecCCc-------eeEEEeeeccCCccccee
Q 017553 21 REYRVTNKLQEGKRPLYAVVF-----NFIDSRYFNVFATVGGNR-VTVYQCLEGG-------VIAALQSYVDEDKEESFY 87 (369)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~~~~-----s~~~~~~~~~la~~~~~~-v~iw~~~~~~-------~~~~~~~~~~~~~~~~v~ 87 (369)
..+++...|++|.+.|++++| +|. ++++||+|+.|+ |++||+.+.+ ....+. .|...|.
T Consensus 9 ~~~~~~~~l~gH~~~V~~~~~~~s~~~~~---d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~-----~h~~~V~ 80 (343)
T 2xzm_R 9 IQVVKRGILEGHSDWVTSIVAGFSQKENE---DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALT-----GHNHFVS 80 (343)
T ss_dssp EEEEEEEEEECCSSCEEEEEECCCSSTTC---CCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEEC-----CCSSCEE
T ss_pred eEeeeeeeeccchhhhhheeeEEEeecCC---CCCEEEEEcCCCEEEEEECCcCCcccccccccchhc-----cCCCceE
Confidence 455677789999999999999 442 589999999999 9999987543 222233 6888999
Q ss_pred EEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEe
Q 017553 88 TVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIF 167 (369)
Q Consensus 88 ~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 167 (369)
+++|+ |++. ++++|+.|++|++||+.+++.+..+.+|...|.+++|+| ++.+|++++.|+.|++||+.. ......
T Consensus 81 ~~~~~--~~~~-~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~~~d~~i~~wd~~~-~~~~~~ 155 (343)
T 2xzm_R 81 DLALS--QENC-FAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP-DNRQILSAGAEREIKLWNILG-ECKFSS 155 (343)
T ss_dssp EEEEC--SSTT-EEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECS-STTEEEEEETTSCEEEEESSS-CEEEEC
T ss_pred EEEEC--CCCC-EEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECC-CCCEEEEEcCCCEEEEEeccC-Cceeee
Confidence 99998 8898 999999999999999999999999999999999999999 889999999999999999974 444444
Q ss_pred eccCCCCCcEEEEEecCCCc----------eEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeec
Q 017553 168 AGAGGHRNEVLSVDFHPSDI----------YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS 237 (369)
Q Consensus 168 ~~~~~~~~~v~~~~~~~~~~----------~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (369)
....+|...|.+++|+| ++ .+|++++.|+.|++||... .....+.
T Consensus 156 ~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~------------------------~~~~~~~ 210 (343)
T 2xzm_R 156 AEKENHSDWVSCVRYSP-IMKSANKVQPFAPYFASVGWDGRLKVWNTNF------------------------QIRYTFK 210 (343)
T ss_dssp CTTTSCSSCEEEEEECC-CCCSCSCCCSSCCEEEEEETTSEEEEEETTT------------------------EEEEEEE
T ss_pred ecccCCCceeeeeeecc-ccccccccCCCCCEEEEEcCCCEEEEEcCCC------------------------ceeEEEc
Confidence 43346899999999999 54 6899999999999999543 2344667
Q ss_pred cCCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeE
Q 017553 238 VHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKI 315 (369)
Q Consensus 238 ~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i 315 (369)
.|...|.+++|+ +++|++++.|+.|++||+..... ....+ .+...|.+++|+|++. ++++ +.|+.|
T Consensus 211 ~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~--------~~~~~-~~~~~v~~v~~sp~~~--~la~-~~d~~v 278 (343)
T 2xzm_R 211 AHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTY--------PQREF-DAGSTINQIAFNPKLQ--WVAV-GTDQGV 278 (343)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSS--------CSEEE-ECSSCEEEEEECSSSC--EEEE-EESSCE
T ss_pred CccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcc--------cceee-cCCCcEEEEEECCCCC--EEEE-ECCCCE
Confidence 899999999997 78999999999999999954432 12222 1345699999999985 6654 457789
Q ss_pred EEEEccCCCceeEEEeec---------CCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 316 FVWELQSSPPVLIARLSH---------AQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 316 ~i~d~~~~~~~~~~~~~~---------~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
++||+.+.+......+.. .+|...|.+++|+|+|++|++|+.||.|++|++++
T Consensus 279 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 279 KIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp EEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred EEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence 999998876544434431 25778899999999999999999999999999864
No 15
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.2e-47 Score=326.20 Aligned_cols=304 Identities=20% Similarity=0.310 Sum_probs=246.8
Q ss_pred cCCcCeEEEEEeeccCCCccEEEEecCCcEEEEEecCCceeEEEeeeccC-------------CcccceeEEEeeecCCC
Q 017553 31 EGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDE-------------DKEESFYTVSWACNVDG 97 (369)
Q Consensus 31 ~h~~~v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~g 97 (369)
+|...|++++|+| +|++||+++.+.++||++.+++.+..+..+... .+...|.+++|+ |+|
T Consensus 62 ~h~~~V~~v~fsp----dg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~dg 135 (393)
T 1erj_A 62 DHTSVVCCVKFSN----DGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS--PDG 135 (393)
T ss_dssp ECSSCCCEEEECT----TSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEEC--TTS
T ss_pred CCCCEEEEEEECC----CCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEEC--CCC
Confidence 6999999999999 689999998766999999999887776543211 122347888887 999
Q ss_pred ccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcE
Q 017553 98 IPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEV 177 (369)
Q Consensus 98 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v 177 (369)
+ +|++|+.||.|++||+.+++.+..+.+|...|.+++|+| ++.+|++++.|++|++||++++++...+. +...+
T Consensus 136 ~-~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~----~~~~v 209 (393)
T 1erj_A 136 K-FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQCSLTLS----IEDGV 209 (393)
T ss_dssp S-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEE----CSSCE
T ss_pred C-EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcC-CCCEEEEecCCCcEEEEECCCCeeEEEEE----cCCCc
Confidence 9 999999999999999999999999999999999999999 88999999999999999999999888876 77889
Q ss_pred EEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEE
Q 017553 178 LSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILS 255 (369)
Q Consensus 178 ~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~ 255 (369)
.+++|+|.++.+|++++.|+.|++||++++...... ........+|...|.+++|+ ++++++
T Consensus 210 ~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~----------------~~~~~~~~~h~~~v~~v~~~~~g~~l~s 273 (393)
T 1erj_A 210 TTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL----------------DSENESGTGHKDSVYSVVFTRDGQSVVS 273 (393)
T ss_dssp EEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEE----------------C------CCCSSCEEEEEECTTSSEEEE
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEee----------------cccccCCCCCCCCEEEEEECCCCCEEEE
Confidence 999999877899999999999999999884322111 01112235789999999997 789999
Q ss_pred eecCCeEEEecCCCCCCCCCC---CccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEee
Q 017553 256 KSVDNEIVLWEPKMKEQSPGE---GTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLS 332 (369)
Q Consensus 256 ~~~d~~i~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 332 (369)
++.|+.|++||+++....... ........+..|...|.+++|+|+++ +|++|+.|+.|++||+.+++ .+..+.
T Consensus 274 ~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~iwd~~~~~--~~~~l~ 349 (393)
T 1erj_A 274 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE--YILSGSKDRGVLFWDKKSGN--PLLMLQ 349 (393)
T ss_dssp EETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGC--EEEEEETTSEEEEEETTTCC--EEEEEE
T ss_pred EeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCC--EEEEEeCCCeEEEEECCCCe--EEEEEC
Confidence 999999999999875432110 11224556677888999999999996 89999999999999999985 455666
Q ss_pred cCCCccceEEEEecC------CCCEEEEeecCCeEEEEecCC
Q 017553 333 HAQSKSPIRQTAMSY------DGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 333 ~~~~~~~v~~~~~s~------~~~~l~s~~~dg~i~vw~~~~ 368 (369)
+|...|.+++|++ ++++|++|+.||.|+||++..
T Consensus 350 --~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 350 --GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp --CCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred --CCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 8889999999886 688999999999999999753
No 16
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.2e-46 Score=339.19 Aligned_cols=318 Identities=17% Similarity=0.299 Sum_probs=252.3
Q ss_pred ccccccccccccccccccceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeee--ccC
Q 017553 4 TAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSY--VDE 80 (369)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~--~~~ 80 (369)
+++++.+....+.. ..+.++...+.+|...|++++|+| +|++||+++.|+ |++||+.+++....+... ...
T Consensus 163 l~s~s~D~~v~lwd--~~~~~~~~~l~~H~~~V~~v~fsp----dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~ 236 (611)
T 1nr0_A 163 IISGSDDNTVAIFE--GPPFKFKSTFGEHTKFVHSVRYNP----DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNV 236 (611)
T ss_dssp EEEEETTSCEEEEE--TTTBEEEEEECCCSSCEEEEEECT----TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSC
T ss_pred EEEEeCCCeEEEEE--CCCCeEeeeeccccCceEEEEECC----CCCEEEEEECCCcEEEEECCCCcEeeeecccccccc
Confidence 45555555544443 456677788999999999999999 689999999999 999999988877665321 111
Q ss_pred CcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccc--------------------------------------
Q 017553 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHK-------------------------------------- 122 (369)
Q Consensus 81 ~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~-------------------------------------- 122 (369)
.|...|.+++|+ |+|+ +|++++.|++|++||+.+++.+.
T Consensus 237 ~h~~~V~~v~~s--pdg~-~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~ 313 (611)
T 1nr0_A 237 AHSGSVFGLTWS--PDGT-KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPEL 313 (611)
T ss_dssp SSSSCEEEEEEC--TTSS-EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTT
T ss_pred ccCCCEEEEEEC--CCCC-EEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCC
Confidence 488899999998 9998 99999999999999998765433
Q ss_pred -----eeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeec----------------------------
Q 017553 123 -----SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAG---------------------------- 169 (369)
Q Consensus 123 -----~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---------------------------- 169 (369)
.+.+|...|.+++|+| ++++|++++.|++|++||+.+++....+..
T Consensus 314 ~~~~~~~~gh~~~v~~l~~sp-dg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~ 392 (611)
T 1nr0_A 314 GSIDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKV 392 (611)
T ss_dssp TEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEE
T ss_pred CCcceEEcCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEE
Confidence 3357899999999999 899999999999999999987655432200
Q ss_pred ----------------------------c-----------------------CCCCCcEEEEEecCCCceEEEEEeeCCc
Q 017553 170 ----------------------------A-----------------------GGHRNEVLSVDFHPSDIYRIASCGMDNT 198 (369)
Q Consensus 170 ----------------------------~-----------------------~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 198 (369)
. ..|...+.+++|+| ++++|++|+.|++
T Consensus 393 w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~sp-dg~~lasgs~D~~ 471 (611)
T 1nr0_A 393 VPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSN-DKQFVAVGGQDSK 471 (611)
T ss_dssp ECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECT-TSCEEEEEETTSE
T ss_pred eecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeC-CCCEEEEeCCCCe
Confidence 0 01234567889999 8899999999999
Q ss_pred EEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCC
Q 017553 199 VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGE 276 (369)
Q Consensus 199 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~ 276 (369)
|++||+..... ..... ..|...|.+++|+ +++|++++.|+.|++||+.+...
T Consensus 472 v~lwd~~~~~~---------------------~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~---- 525 (611)
T 1nr0_A 472 VHVYKLSGASV---------------------SEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFE---- 525 (611)
T ss_dssp EEEEEEETTEE---------------------EEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTE----
T ss_pred EEEEEccCCce---------------------eeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCc----
Confidence 99999876321 11222 5799999999998 78999999999999999986221
Q ss_pred Cccceee--eccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCC-ccceEEEEecCCCCEEE
Q 017553 277 GTADILQ--KYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQS-KSPIRQTAMSYDGSTIL 353 (369)
Q Consensus 277 ~~~~~~~--~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~ 353 (369)
.+. .+..|...|.+++|+|+++ +|++|+.|+.|++||+.++.......+. +| ...|.+++|+|+++ |+
T Consensus 526 ----~~~~~~~~~H~~~V~~v~fspdg~--~lasgs~D~~v~lW~~~~~~~~~~~~~~--~h~~~~v~~v~fs~d~~-l~ 596 (611)
T 1nr0_A 526 ----LAHTNSWTFHTAKVACVSWSPDNV--RLATGSLDNSVIVWNMNKPSDHPIIIKG--AHAMSSVNSVIWLNETT-IV 596 (611)
T ss_dssp ----ESCCCCCCCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTCTTSCCEEETT--SSTTSCEEEEEEEETTE-EE
T ss_pred ----eeeeeeeeecccceeEEEECCCCC--EEEEEECCCcEEEEECCCcccccchhhc--cCcccCeeEEEEcCCCE-EE
Confidence 222 2344888999999999996 9999999999999999886533323444 77 78999999999998 99
Q ss_pred EeecCCeEEEEecC
Q 017553 354 SCCEDGAIWRWDAI 367 (369)
Q Consensus 354 s~~~dg~i~vw~~~ 367 (369)
+++.|++|++|++.
T Consensus 597 s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 597 SAGQDSNIKFWNVP 610 (611)
T ss_dssp EEETTSCEEEEECC
T ss_pred EecCCCCEEEEecc
Confidence 99999999999973
No 17
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=8.2e-46 Score=310.98 Aligned_cols=303 Identities=18% Similarity=0.278 Sum_probs=249.7
Q ss_pred cccceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCC
Q 017553 19 KKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDG 97 (369)
Q Consensus 19 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g 97 (369)
...++++..+|+||.+.|++|+|+|+ .+++||||+.|+ |+|||+.+.+............|...|.+++|+ |+|
T Consensus 24 ~~~~~~l~~tL~GH~~~V~~v~~sp~---~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s--~dg 98 (340)
T 4aow_A 24 MTEQMTLRGTLKGHNGWVTQIATTPQ---FPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVIS--SDG 98 (340)
T ss_dssp --CEEEEEEEECCCSSCEEEEEECTT---CTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEEC--TTS
T ss_pred cCCceEEEEEECCccCCEEEEEEeCC---CCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEEC--CCC
Confidence 34667788889999999999999994 368999999999 999999876543322222223688999999998 999
Q ss_pred ccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcE
Q 017553 98 IPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEV 177 (369)
Q Consensus 98 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v 177 (369)
+ +|++++.|+.|++|+............+...+..+.+++ ++.+|++++.|+.+++||+.......... .+|...+
T Consensus 99 ~-~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~s~d~~~~~~d~~~~~~~~~~~--~~~~~~v 174 (340)
T 4aow_A 99 Q-FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWNTLGVCKYTVQD--ESHSEWV 174 (340)
T ss_dssp S-EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEEEECS--SSCSSCE
T ss_pred C-EEEEEcccccceEEeecccceeeeecCCCCceeEEEEee-cCccceeecCCCeEEEEEeCCCceEEEEe--ccccCcc
Confidence 9 999999999999999999888888888889999999999 88999999999999999998765543332 2799999
Q ss_pred EEEEecCCC-ceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEE
Q 017553 178 LSVDFHPSD-IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFIL 254 (369)
Q Consensus 178 ~~~~~~~~~-~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~ 254 (369)
..++|++.. ..++++++.|+.|++||++++ ..+..+..|...|.+++|+ +++|+
T Consensus 175 ~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~-----------------------~~~~~~~~h~~~v~~~~~s~~~~~l~ 231 (340)
T 4aow_A 175 SCVRFSPNSSNPIIVSCGWDKLVKVWNLANC-----------------------KLKTNHIGHTGYLNTVTVSPDGSLCA 231 (340)
T ss_dssp EEEEECSCSSSCEEEEEETTSCEEEEETTTT-----------------------EEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred cceEEccCCCCcEEEEEcCCCEEEEEECCCC-----------------------ceeeEecCCCCcEEEEEECCCCCEEE
Confidence 999998733 356789999999999999983 3456677899999999997 78999
Q ss_pred EeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEee--
Q 017553 255 SKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLS-- 332 (369)
Q Consensus 255 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-- 332 (369)
+++.|+.|++||+++.+ .+..+..+ ..+..+.|+|++ .+++++.|+.|++||++++. ....+.
T Consensus 232 s~s~Dg~i~iwd~~~~~---------~~~~~~~~-~~v~~~~~~~~~---~~~~~~~d~~i~iwd~~~~~--~~~~~~~~ 296 (340)
T 4aow_A 232 SGGKDGQAMLWDLNEGK---------HLYTLDGG-DIINALCFSPNR---YWLCAATGPSIKIWDLEGKI--IVDELKQE 296 (340)
T ss_dssp EEETTCEEEEEETTTTE---------EEEEEECS-SCEEEEEECSSS---SEEEEEETTEEEEEETTTTE--EEEEECCC
T ss_pred EEeCCCeEEEEEeccCc---------eeeeecCC-ceEEeeecCCCC---ceeeccCCCEEEEEECCCCe--EEEecccc
Confidence 99999999999999875 45555443 578999999987 46667789999999998763 333332
Q ss_pred -----cCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 333 -----HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 333 -----~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
..+|...|++++|+|||++|++|+.||.|+|||+++
T Consensus 297 ~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~t 337 (340)
T 4aow_A 297 VISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTI 337 (340)
T ss_dssp -------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred ceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence 236788999999999999999999999999999875
No 18
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.7e-46 Score=336.91 Aligned_cols=317 Identities=14% Similarity=0.158 Sum_probs=246.9
Q ss_pred eeecccCCcCeEEEEEeeccCCCcc-EEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEE
Q 017553 26 TNKLQEGKRPLYAVVFNFIDSRYFN-VFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVA 103 (369)
Q Consensus 26 ~~~~~~h~~~v~~~~~s~~~~~~~~-~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~ 103 (369)
...+.+|...|++++|+| ++. +|++++.|+ |++||..+++....+. .|...|.+++|+ |+|+ +|++
T Consensus 140 ~~~l~gh~~~v~~v~f~p----~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~-----~H~~~V~~v~fs--pdg~-~las 207 (611)
T 1nr0_A 140 NGNLTGQARAMNSVDFKP----SRPFRIISGSDDNTVAIFEGPPFKFKSTFG-----EHTKFVHSVRYN--PDGS-LFAS 207 (611)
T ss_dssp CBCCCCCSSCEEEEEECS----SSSCEEEEEETTSCEEEEETTTBEEEEEEC-----CCSSCEEEEEEC--TTSS-EEEE
T ss_pred cceecCCCCCceEEEECC----CCCeEEEEEeCCCeEEEEECCCCeEeeeec-----cccCceEEEEEC--CCCC-EEEE
Confidence 446789999999999999 454 699999999 9999988877766665 588899999998 9998 9999
Q ss_pred eecCCeEEEEEcCCccccceee-------ccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEee--------
Q 017553 104 GGINGIIRVIDVSNEKLHKSFV-------GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFA-------- 168 (369)
Q Consensus 104 ~~~dg~i~vwd~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-------- 168 (369)
|+.|++|++||+.+++.+..+. +|.+.|.+++|+| ++.+|++++.|++|++||+++++.+..+.
T Consensus 208 ~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~ 286 (611)
T 1nr0_A 208 TGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQ 286 (611)
T ss_dssp EETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGC
T ss_pred EECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECC-CCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccce
Confidence 9999999999999988877774 7999999999999 89999999999999999999887665442
Q ss_pred --------------------------------ccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeee--
Q 017553 169 --------------------------------GAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKS-- 214 (369)
Q Consensus 169 --------------------------------~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~-- 214 (369)
...+|...|.+++|+| ++++|++++.|++|++||+.++.......
T Consensus 287 ~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~sp-dg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~ 365 (611)
T 1nr0_A 287 QLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDV 365 (611)
T ss_dssp EEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEECSSCS
T ss_pred eEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeecccC
Confidence 1237999999999999 99999999999999999998754322110
Q ss_pred -------eecc------------------CCCCCCCC----------cee-----------------------ecceeee
Q 017553 215 -------FTWT------------------DLPSKFPT----------KYV-----------------------QFPVFIA 236 (369)
Q Consensus 215 -------~~~~------------------~~~~~~~~----------~~~-----------------------~~~~~~~ 236 (369)
+.+. ........ ... ...+..+
T Consensus 366 h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~ 445 (611)
T 1nr0_A 366 HATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEV 445 (611)
T ss_dssp CSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEE
T ss_pred CcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeee
Confidence 0000 00000000 000 0001111
Q ss_pred ccCCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCe
Q 017553 237 SVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGK 314 (369)
Q Consensus 237 ~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~ 314 (369)
.|...+.+++|+ ++++++++.|+.|++||+.+... ..+.. ..|...|.+++|+|+++ +|++++.|+.
T Consensus 446 -~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~-------~~~~~-~~h~~~v~~v~fspdg~--~las~s~d~~ 514 (611)
T 1nr0_A 446 -PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASV-------SEVKT-IVHPAEITSVAFSNNGA--FLVATDQSRK 514 (611)
T ss_dssp -ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEE-------EEEEE-EECSSCEEEEEECTTSS--EEEEEETTSC
T ss_pred -ecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCce-------eeeec-cCCCCceEEEEECCCCC--EEEEEcCCCC
Confidence 255678889997 88999999999999999976531 12233 56788999999999997 9999999999
Q ss_pred EEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 315 IFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 315 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
|++||+.+.. ..........|...|.+++|+|||++||+|+.|+.|++||+++
T Consensus 515 v~~w~~~~~~-~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~ 567 (611)
T 1nr0_A 515 VIPYSVANNF-ELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNK 567 (611)
T ss_dssp EEEEEGGGTT-EESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC
T ss_pred EEEEEcCCCC-ceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCC
Confidence 9999998732 2222111224889999999999999999999999999999864
No 19
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.4e-45 Score=335.02 Aligned_cols=295 Identities=22% Similarity=0.330 Sum_probs=242.6
Q ss_pred ceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCce-----eEEEeeeccCCcccceeEEEeeecC
Q 017553 22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGV-----IAALQSYVDEDKEESFYTVSWACNV 95 (369)
Q Consensus 22 ~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~ 95 (369)
.++....+++|.+.|++|+|+|+ ++++|++|+.|+ |++|++.+... ...+. .|...|.+++|+ |
T Consensus 371 ~l~~~~~l~~H~~~V~~v~~~~~---~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~-----~h~~~v~~v~~s--~ 440 (694)
T 3dm0_A 371 GLVLKGTMRAHTDMVTAIATPID---NADIIVSASRDKSIILWKLTKDDKAYGVAQRRLT-----GHSHFVEDVVLS--S 440 (694)
T ss_dssp SSEEEEEEECCSSCEEEEECCTT---CCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEE-----CCSSCEEEEEEC--T
T ss_pred ccchhhhcccCCceeEEEEecCC---CCCEEEEEeCCCcEEEEEccCCCcccccccceec-----CCCCcEEEEEEC--C
Confidence 35566678999999999999984 368999999999 99999876432 22333 688899999998 9
Q ss_pred CCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCC
Q 017553 96 DGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRN 175 (369)
Q Consensus 96 ~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 175 (369)
+|+ +|++|+.||.|++||+.+++....+.+|...|.+++|+| ++.+|++|+.|++|++||..............+|..
T Consensus 441 ~g~-~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~ 518 (694)
T 3dm0_A 441 DGQ-FALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSL-DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRD 518 (694)
T ss_dssp TSS-EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSS
T ss_pred CCC-EEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCC
Confidence 998 999999999999999999999999999999999999999 899999999999999999876554444433447899
Q ss_pred cEEEEEecCCCc--eEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--Cc
Q 017553 176 EVLSVDFHPSDI--YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GD 251 (369)
Q Consensus 176 ~v~~~~~~~~~~--~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~ 251 (369)
.|.+++|+| ++ ..+++++.|++|++||+++ ......+..|...|.+++|+ ++
T Consensus 519 ~v~~~~~~~-~~~~~~l~s~s~d~~v~vwd~~~-----------------------~~~~~~~~~h~~~v~~v~~spdg~ 574 (694)
T 3dm0_A 519 WVSCVRFSP-NTLQPTIVSASWDKTVKVWNLSN-----------------------CKLRSTLAGHTGYVSTVAVSPDGS 574 (694)
T ss_dssp CEEEEEECS-CSSSCEEEEEETTSCEEEEETTT-----------------------CCEEEEECCCSSCEEEEEECTTSS
T ss_pred cEEEEEEeC-CCCcceEEEEeCCCeEEEEECCC-----------------------CcEEEEEcCCCCCEEEEEEeCCCC
Confidence 999999999 54 6899999999999999988 33456778899999999997 78
Q ss_pred EEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEe
Q 017553 252 FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARL 331 (369)
Q Consensus 252 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 331 (369)
++++++.|+.|++||+++++ .+..+.. ...+.+++|+|++. +++++ .++.|++||+.+++ .+..+
T Consensus 575 ~l~sg~~Dg~i~iwd~~~~~---------~~~~~~~-~~~v~~~~~sp~~~--~l~~~-~~~~i~iwd~~~~~--~~~~~ 639 (694)
T 3dm0_A 575 LCASGGKDGVVLLWDLAEGK---------KLYSLEA-NSVIHALCFSPNRY--WLCAA-TEHGIKIWDLESKS--IVEDL 639 (694)
T ss_dssp EEEEEETTSBCEEEETTTTE---------EEECCBC-SSCEEEEEECSSSS--EEEEE-ETTEEEEEETTTTE--EEEEE
T ss_pred EEEEEeCCCeEEEEECCCCc---------eEEEecC-CCcEEEEEEcCCCc--EEEEE-cCCCEEEEECCCCC--Chhhh
Confidence 99999999999999999876 3444443 45799999999984 55554 56679999999874 33333
Q ss_pred ecC-----------------CCccceEEEEecCCCCEEEEeecCCeEEEEecC
Q 017553 332 SHA-----------------QSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 332 ~~~-----------------~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 367 (369)
... .+...+++++|+|+|++|++|+.||.|+||++.
T Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 640 KVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp CCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 210 111247899999999999999999999999985
No 20
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.2e-44 Score=325.37 Aligned_cols=281 Identities=25% Similarity=0.405 Sum_probs=246.8
Q ss_pred eeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEE
Q 017553 24 RVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLV 102 (369)
Q Consensus 24 ~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~ 102 (369)
+....+.+|...|++++|+| ++++|++++.|+ |++||.. +..+..+. .|...+.+++|+ |+|+ +|+
T Consensus 294 ~~~~~~~~h~~~v~~~~~~~----~~~~l~t~~~d~~i~~w~~~-~~~~~~~~-----~~~~~v~~~~~s--~~g~-~l~ 360 (577)
T 2ymu_A 294 QLLQTLTGHSSSVWGVAFSP----DGQTIASASDDKTVKLWNRN-GQHLQTLT-----GHSSSVWGVAFS--PDGQ-TIA 360 (577)
T ss_dssp CEEEEECCCSSCEEEEEECT----TSSEEEEEETTSCEEEEETT-SCEEEEEC-----CCSSCEEEEEEC--TTSS-EEE
T ss_pred cEEEEEecCCCCeEEEEECC----CCCEEEEEeCCCeEEEEeCC-CCeeEEEe-----CCCCCEEEEEEC--CCCC-EEE
Confidence 45567789999999999999 689999999998 9999954 44444444 477889999888 9999 999
Q ss_pred EeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEe
Q 017553 103 AGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDF 182 (369)
Q Consensus 103 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~ 182 (369)
+|+.||.|++||. +++.+..+.+|...|.+++|+| ++++|++++.|+.|++||. +++.+..+. +|...|++++|
T Consensus 361 ~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~~-~~~~~~~~~---~~~~~v~~~~~ 434 (577)
T 2ymu_A 361 SASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLT---GHSSSVWGVAF 434 (577)
T ss_dssp EEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECT-TCCEEEEEE---CCSSCEEEEEE
T ss_pred EEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEeC-CCCEEEEec---CCCCCeEEEEE
Confidence 9999999999995 6778888999999999999999 8999999999999999995 567777777 79999999999
Q ss_pred cCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCC
Q 017553 183 HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDN 260 (369)
Q Consensus 183 ~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~ 260 (369)
+| ++.+|++++.|+.|++||... ..+..+..|...|.+++|+ +++|++++.|+
T Consensus 435 s~-d~~~l~~~~~d~~v~~w~~~~------------------------~~~~~~~~~~~~v~~~~~spd~~~las~~~d~ 489 (577)
T 2ymu_A 435 SP-DDQTIASASDDKTVKLWNRNG------------------------QLLQTLTGHSSSVRGVAFSPDGQTIASASDDK 489 (577)
T ss_dssp CT-TSSEEEEEETTSEEEEEETTS------------------------CEEEEEECCSSCEEEEEECTTSCEEEEEETTS
T ss_pred CC-CCCEEEEEcCCCEEEEEECCC------------------------CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC
Confidence 99 889999999999999999754 2355677899999999997 78999999999
Q ss_pred eEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccce
Q 017553 261 EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPI 340 (369)
Q Consensus 261 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v 340 (369)
.|++||.. ++ .+..+..|...|++++|+|+++ +|++++.||.|++||.. + ..+..+. +|...|
T Consensus 490 ~i~iw~~~-~~---------~~~~~~~h~~~v~~l~~s~dg~--~l~s~~~dg~v~lwd~~-~--~~~~~~~--~h~~~v 552 (577)
T 2ymu_A 490 TVKLWNRN-GQ---------LLQTLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRN-G--QLLQTLT--GHSSSV 552 (577)
T ss_dssp EEEEEETT-SC---------EEEEEECCSSCEEEEEECTTSS--CEEEEETTSEEEEECTT-S--CEEEEEE--CCSSCE
T ss_pred EEEEEcCC-CC---------EEEEEeCCCCCEEEEEEcCCCC--EEEEEECcCEEEEEeCC-C--CEEEEEc--CCCCCE
Confidence 99999964 33 6778888999999999999997 89999999999999964 4 3556666 889999
Q ss_pred EEEEecCCCCEEEEeecCCeEEEEe
Q 017553 341 RQTAMSYDGSTILSCCEDGAIWRWD 365 (369)
Q Consensus 341 ~~~~~s~~~~~l~s~~~dg~i~vw~ 365 (369)
++++|+|||++|+|++.|+.|++||
T Consensus 553 ~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 553 WGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 9999999999999999999999997
No 21
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2e-44 Score=297.23 Aligned_cols=246 Identities=16% Similarity=0.246 Sum_probs=217.6
Q ss_pred CcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccC
Q 017553 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 160 (369)
Q Consensus 81 ~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 160 (369)
.|.+.|.+++|+ |+++ +|++|+.||.|++||+.+++.+..+..|..+|.+++|+| ++++|++|+.|+.|++||+.+
T Consensus 11 ~h~~~V~~~~fs--p~~~-~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~s~d~~i~vwd~~~ 86 (304)
T 2ynn_A 11 NRSDRVKGIDFH--PTEP-WVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIA-RKNWIIVGSDDFRIRVFNYNT 86 (304)
T ss_dssp EECSCEEEEEEC--SSSS-EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEG-GGTEEEEEETTSEEEEEETTT
T ss_pred CCCCceEEEEEC--CCCC-EEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeC-CCCEEEEECCCCEEEEEECCC
Confidence 478899999998 9998 999999999999999999999999999999999999999 899999999999999999999
Q ss_pred CcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCC
Q 017553 161 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 240 (369)
Q Consensus 161 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (369)
++.+..+. +|...|.+++|+| ++.+|++|+.|++|++||++++. .....+.+|.
T Consensus 87 ~~~~~~~~---~h~~~v~~~~~~~-~~~~l~sgs~D~~v~lWd~~~~~----------------------~~~~~~~~h~ 140 (304)
T 2ynn_A 87 GEKVVDFE---AHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNW----------------------ALEQTFEGHE 140 (304)
T ss_dssp CCEEEEEE---CCSSCEEEEEECS-SSSEEEEEETTSCEEEEEGGGTT----------------------EEEEEECCCC
T ss_pred CcEEEEEe---CCCCcEEEEEEcC-CCCEEEEECCCCeEEEEECCCCc----------------------chhhhhcccC
Confidence 99999988 7999999999999 88999999999999999998731 2344677899
Q ss_pred Cceeeeeee---CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEE
Q 017553 241 NYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFV 317 (369)
Q Consensus 241 ~~v~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i 317 (369)
..|.+++|+ +.++++++.|+.|++||+++... .......+...+..+.|+|.....+|++++.|+.|++
T Consensus 141 ~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~i 212 (304)
T 2ynn_A 141 HFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP--------NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212 (304)
T ss_dssp SCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSC--------SEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEE
T ss_pred CcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCc--------cceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEE
Confidence 999999997 46899999999999999987652 2222334557788999998554459999999999999
Q ss_pred EEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 318 WELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 318 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
||+.++ ..+..+. +|...|.+++|+|++++|++|+.||.|++||+.+
T Consensus 213 Wd~~~~--~~~~~~~--~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~ 259 (304)
T 2ynn_A 213 WDYQTK--SCVATLE--GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259 (304)
T ss_dssp EETTTT--EEEEEEE--CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred EeCCCC--ccceeeC--CCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 999988 5666777 8889999999999999999999999999999864
No 22
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.9e-43 Score=296.13 Aligned_cols=285 Identities=14% Similarity=0.227 Sum_probs=244.5
Q ss_pred cccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecC
Q 017553 29 LQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN 107 (369)
Q Consensus 29 ~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~d 107 (369)
..+|...|++++|+| ++++|++++ ++ |++|++.+++....+.......+...|.+++|+ |+++ +|++++.|
T Consensus 47 ~~~h~~~v~~~~~~~----~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~-~l~~~~~d 118 (337)
T 1gxr_A 47 TLNHGEVVCAVTISN----PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLL--PDGC-TLIVGGEA 118 (337)
T ss_dssp EECCSSCCCEEEECS----SSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEEC--TTSS-EEEEEESS
T ss_pred eccCCCceEEEEEec----CCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEc--CCCC-EEEEEcCC
Confidence 347999999999999 689999999 55 999999887655444444333578899999998 8998 99999999
Q ss_pred CeEEEEEcCCcc--ccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCC
Q 017553 108 GIIRVIDVSNEK--LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS 185 (369)
Q Consensus 108 g~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 185 (369)
|.|++||+.+++ ....+..|...|.+++|+| ++++|++++.||.|++||+++++.+..+. .|...|.+++|+|
T Consensus 119 ~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~~~~~---~~~~~i~~~~~~~- 193 (337)
T 1gxr_A 119 STLSIWDLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQ---GHTDGASCIDISN- 193 (337)
T ss_dssp SEEEEEECCCC--EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEEC---CCSSCEEEEEECT-
T ss_pred CcEEEEECCCCCcceeeecccCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeeee---cccCceEEEEECC-
Confidence 999999998877 5667788999999999999 89999999999999999999999888887 7999999999999
Q ss_pred CceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEE
Q 017553 186 DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIV 263 (369)
Q Consensus 186 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~ 263 (369)
++.+|++++.|+.|++||+++++. +.. ..+...+.+++|+ ++++++++.++.|+
T Consensus 194 ~~~~l~~~~~dg~i~~~d~~~~~~-----------------------~~~-~~~~~~v~~~~~s~~~~~l~~~~~~~~i~ 249 (337)
T 1gxr_A 194 DGTKLWTGGLDNTVRSWDLREGRQ-----------------------LQQ-HDFTSQIFSLGYCPTGEWLAVGMESSNVE 249 (337)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEE-----------------------EEE-EECSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCCEEEEEecCCcEEEEECCCCce-----------------------Eee-ecCCCceEEEEECCCCCEEEEEcCCCcEE
Confidence 889999999999999999998431 222 2367788999997 77999999999999
Q ss_pred EecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEE
Q 017553 264 LWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQT 343 (369)
Q Consensus 264 i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~ 343 (369)
+||+++.+ ...+..+...+.+++|+|+++ +|++++.||.|++||+.+++.. ... .|...|.++
T Consensus 250 ~~~~~~~~----------~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~~~~~~~~~~~--~~~---~~~~~v~~~ 312 (337)
T 1gxr_A 250 VLHVNKPD----------KYQLHLHESCVLSLKFAYCGK--WFVSTGKDNLLNAWRTPYGASI--FQS---KESSSVLSC 312 (337)
T ss_dssp EEETTSSC----------EEEECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCEE--EEE---ECSSCEEEE
T ss_pred EEECCCCC----------eEEEcCCccceeEEEECCCCC--EEEEecCCCcEEEEECCCCeEE--EEe---cCCCcEEEE
Confidence 99998764 345567788999999999996 8999999999999999998533 333 455789999
Q ss_pred EecCCCCEEEEeecCCeEEEEecC
Q 017553 344 AMSYDGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 344 ~~s~~~~~l~s~~~dg~i~vw~~~ 367 (369)
+|+|++++|++++.||.|++|++.
T Consensus 313 ~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 313 DISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp EECTTSCEEEEEETTSCEEEEEEE
T ss_pred EECCCCCEEEEecCCCeEEEEEEe
Confidence 999999999999999999999973
No 23
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2e-44 Score=299.07 Aligned_cols=267 Identities=15% Similarity=0.254 Sum_probs=238.0
Q ss_pred ccccccccccccccccccceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCc
Q 017553 4 TAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDK 82 (369)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~ 82 (369)
+++|+.+....+.............+.+|...|.+++|+| ++.++++++.|+ |++||+.+++.+..+. .+
T Consensus 51 l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~----~~~~l~s~s~D~~i~lWd~~~~~~~~~~~-----~~ 121 (321)
T 3ow8_A 51 VVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISH----TLPIAASSSLDAHIRLWDLENGKQIKSID-----AG 121 (321)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECS----SSSEEEEEETTSEEEEEETTTTEEEEEEE-----CC
T ss_pred EEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECC----CCCEEEEEeCCCcEEEEECCCCCEEEEEe-----CC
Confidence 5666777666666555555566677899999999999999 689999999999 9999999998887776 35
Q ss_pred ccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCc
Q 017553 83 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI 162 (369)
Q Consensus 83 ~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 162 (369)
...+.+++|+ |+++ +|++|+.+|.|++|++.+++....+..|...|.+++|+| ++++|++|+.||.|++||+++++
T Consensus 122 ~~~~~~~~~s--pdg~-~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~lasg~~dg~i~iwd~~~~~ 197 (321)
T 3ow8_A 122 PVDAWTLAFS--PDSQ-YLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSP-DGKYLASGAIDGIINIFDIATGK 197 (321)
T ss_dssp TTCCCCEEEC--TTSS-EEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTE
T ss_pred CccEEEEEEC--CCCC-EEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECC-CCCEEEEEcCCCeEEEEECCCCc
Confidence 6677788887 9999 999999999999999999999889999999999999999 89999999999999999999999
Q ss_pred EEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCc
Q 017553 163 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY 242 (369)
Q Consensus 163 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (369)
.+..+. +|..+|.+++|+| ++.+|++++.|+.|++||++. ......+.+|...
T Consensus 198 ~~~~~~---~h~~~v~~l~~sp-d~~~l~s~s~dg~i~iwd~~~-----------------------~~~~~~~~~h~~~ 250 (321)
T 3ow8_A 198 LLHTLE---GHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQH-----------------------ANLAGTLSGHASW 250 (321)
T ss_dssp EEEEEC---CCSSCCCEEEECT-TSCEEEEECTTSCEEEEETTT-----------------------CCEEEEECCCSSC
T ss_pred EEEEEc---ccCCceeEEEEcC-CCCEEEEEcCCCeEEEEECCC-----------------------cceeEEEcCCCCc
Confidence 998888 7999999999999 889999999999999999988 3345677889999
Q ss_pred eeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEc
Q 017553 243 VDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL 320 (369)
Q Consensus 243 v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~ 320 (369)
|.+++|+ +.+|++++.|+.|++||+++++ ++..+..|...|.+++|+|+++ +|++++.||.|++||.
T Consensus 251 v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~---------~~~~~~~h~~~v~~v~~s~~g~--~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 251 VLNVAFCPDDTHFVSSSSDKSVKVWDVGTRT---------CVHTFFDHQDQVWGVKYNGNGS--KIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTE---------EEEEECCCSSCEEEEEECTTSS--EEEEEETTCCEEEEEC
T ss_pred eEEEEECCCCCEEEEEeCCCcEEEEeCCCCE---------EEEEEcCCCCcEEEEEECCCCC--EEEEEeCCCeEEEEeC
Confidence 9999997 7799999999999999999876 6788888999999999999986 8999999999999996
Q ss_pred c
Q 017553 321 Q 321 (369)
Q Consensus 321 ~ 321 (369)
.
T Consensus 320 p 320 (321)
T 3ow8_A 320 P 320 (321)
T ss_dssp C
T ss_pred C
Confidence 3
No 24
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.5e-44 Score=308.48 Aligned_cols=293 Identities=13% Similarity=0.158 Sum_probs=246.6
Q ss_pred eeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCc------eeEEEeeeccCCcccceeEEEeeecC
Q 017553 23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG------VIAALQSYVDEDKEESFYTVSWACNV 95 (369)
Q Consensus 23 ~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~ 95 (369)
.+....+++|.+.|++++|+| ++|++++.|+ |++|++.+++ ....+. .|...|.+++|+ |
T Consensus 6 ~~~~~~~~~h~~~i~~~~~~~------~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~-----~h~~~v~~~~~~--~ 72 (397)
T 1sq9_A 6 IATANAGKAHDADIFSVSACN------SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF-----VHKSGLHHVDVL--Q 72 (397)
T ss_dssp EEEEEESSCSSSCEEEEEECS------SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEE-----CCTTCEEEEEEE--E
T ss_pred hhhhhhhhhhhcCeEEEEecC------CeEEEEcCCCEEEEEECCCcccccCCCcceEEe-----cCCCcEEEEEEe--c
Confidence 456677899999999999998 6899999888 9999998887 555555 578899999998 7
Q ss_pred C----C---ccEEEEeecCCeEEEEEcCCccc-----cceeecc-----ccceEEEEec----CCCCce-EEEEeCCCcE
Q 017553 96 D----G---IPFLVAGGINGIIRVIDVSNEKL-----HKSFVGH-----GDSINEIRTQ----PLKPSL-VVSASKDESV 153 (369)
Q Consensus 96 ~----g---~~~l~~~~~dg~i~vwd~~~~~~-----~~~~~~~-----~~~v~~~~~~----~~~~~~-l~s~~~dg~i 153 (369)
+ | . +|++++.||.|++||+.+++. ...+..| ...|.+++|+ | ++.+ |++++.||.|
T Consensus 73 ~~~~~g~~~~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~l~~~~~dg~i 150 (397)
T 1sq9_A 73 AIERDAFELC-LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDR-LLSHRLVATDVKGTT 150 (397)
T ss_dssp EEETTTEEEE-EEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCE
T ss_pred ccccCCcccc-EEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCC-CCceEEEEEeCCCcE
Confidence 7 8 7 999999999999999998887 7888888 5899999999 8 7888 9999999999
Q ss_pred EEEEccC------CcEEE-----Eeec----cCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeecc
Q 017553 154 RLWNVQT------GICIL-----IFAG----AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWT 218 (369)
Q Consensus 154 ~vwd~~~------~~~~~-----~~~~----~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~ 218 (369)
++||+++ ++.+. .+.. ...|...|.+++|+| ++ ++++++.|+.|++||++++
T Consensus 151 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~----------- 217 (397)
T 1sq9_A 151 YIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELSTL----------- 217 (397)
T ss_dssp EEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTTT-----------
T ss_pred EEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC-Cc-eEEEEeCCCcEEEEECCCC-----------
Confidence 9999998 65554 5530 015889999999999 77 9999999999999999983
Q ss_pred CCCCCCCCceeecceeeecc---C---CCceeeeeee--CcEEEEeecC---CeEEEecCCCCCCCCCCCccceeeeccC
Q 017553 219 DLPSKFPTKYVQFPVFIASV---H---SNYVDCNRWL--GDFILSKSVD---NEIVLWEPKMKEQSPGEGTADILQKYPV 287 (369)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~---~---~~~v~~~~~~--~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 287 (369)
.++..+.. | ...|.+++|+ +++|++++.| +.|++||+++.+ .+..+..
T Consensus 218 ------------~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~---------~~~~~~~ 276 (397)
T 1sq9_A 218 ------------RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE---------RIGSLSV 276 (397)
T ss_dssp ------------EEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC---------EEEEECB
T ss_pred ------------ceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCc---------ccceecc
Confidence 34455566 8 8999999997 7899999999 999999999876 5666666
Q ss_pred -------------CCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeec----CCC--------------
Q 017553 288 -------------PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSH----AQS-------------- 336 (369)
Q Consensus 288 -------------~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~-------------- 336 (369)
|...+.+++|+|+++ +|++++.||.|++||+.+++ .+..+.. .+|
T Consensus 277 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 352 (397)
T 1sq9_A 277 PTHSSQASLGEFAHSSWVMSLSFNDSGE--TLCSAGWDGKLRFWDVKTKE--RITTLNMHCDDIEIEEDILAVDEHGDSL 352 (397)
T ss_dssp C--------CCBSBSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTTE--EEEEEECCGGGCSSGGGCCCBCTTSCBC
T ss_pred CcccccccccccccCCcEEEEEECCCCC--EEEEEeCCCeEEEEEcCCCc--eeEEEecccCcccchhhhhccccccccc
Confidence 889999999999996 89999999999999999884 4444441 133
Q ss_pred -ccceEEEEecCCC----------CEEEEeecCCeEEEEecCC
Q 017553 337 -KSPIRQTAMSYDG----------STILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 337 -~~~v~~~~~s~~~----------~~l~s~~~dg~i~vw~~~~ 368 (369)
...|++++|+|++ ++|++++.||.|++|++++
T Consensus 353 ~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 353 AEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp SSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred cCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence 7899999999998 7999999999999999875
No 25
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-43 Score=298.11 Aligned_cols=292 Identities=15% Similarity=0.196 Sum_probs=251.3
Q ss_pred cceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCcc
Q 017553 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIP 99 (369)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~ 99 (369)
........+.+|.+.|++++|+| ++++|++++.|+ |++||+.+++.+..+. .|...|.+++|+ |+++
T Consensus 20 G~~~~~~~l~~h~~~v~~~~~s~----~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-----~h~~~v~~~~~~--~~~~- 87 (369)
T 3zwl_B 20 GSHMKAIKLTGHERPLTQVKYNK----EGDLLFSCSKDSSASVWYSLNGERLGTLD-----GHTGTIWSIDVD--CFTK- 87 (369)
T ss_dssp CCSEEEEEEECCSSCEEEEEECT----TSCEEEEEESSSCEEEEETTTCCEEEEEC-----CCSSCEEEEEEC--TTSS-
T ss_pred ccccccEEEEEeeceEEEEEEcC----CCCEEEEEeCCCEEEEEeCCCchhhhhhh-----hcCCcEEEEEEc--CCCC-
Confidence 34444556889999999999999 689999999888 9999999998888776 578899999998 8898
Q ss_pred EEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCC-----CcEEEEEccCCcE-----------
Q 017553 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD-----ESVRLWNVQTGIC----------- 163 (369)
Q Consensus 100 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~----------- 163 (369)
+|++++.||.|++||+.+++.+..+. +...|.+++|+| ++.++++++.+ +.|++||+..+..
T Consensus 88 ~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~ 165 (369)
T 3zwl_B 88 YCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSP-CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEP 165 (369)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECT-TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSC
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEcc-CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccce
Confidence 99999999999999999999888888 889999999999 89999999998 9999999986642
Q ss_pred EEEeeccCCCCC--cEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCC
Q 017553 164 ILIFAGAGGHRN--EVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN 241 (369)
Q Consensus 164 ~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (369)
+..+. .|.. .+.+++|+| ++++|++++.||.|++||+++. ...+..+..|..
T Consensus 166 ~~~~~---~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~----------------------~~~~~~~~~~~~ 219 (369)
T 3zwl_B 166 IHKII---THEGLDAATVAGWST-KGKYIIAGHKDGKISKYDVSNN----------------------YEYVDSIDLHEK 219 (369)
T ss_dssp SEEEE---CCTTCCCEEEEEECG-GGCEEEEEETTSEEEEEETTTT----------------------TEEEEEEECCSS
T ss_pred eeecc---CCcCccceeEEEEcC-CCCEEEEEcCCCEEEEEECCCC----------------------cEeEEEEecCCC
Confidence 22333 4555 899999999 8899999999999999999872 124556677899
Q ss_pred ceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCC------
Q 017553 242 YVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG------ 313 (369)
Q Consensus 242 ~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg------ 313 (369)
.|.+++|+ +++|++++.|+.|++||+++.+ .+..+. +...+..++|+|+++ ++++++.++
T Consensus 220 ~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~---------~~~~~~-~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~ 287 (369)
T 3zwl_B 220 SISDMQFSPDLTYFITSSRDTNSFLVDVSTLQ---------VLKKYE-TDCPLNTAVITPLKE--FIILGGGQEAKDVTT 287 (369)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCC---------EEEEEE-CSSCEEEEEECSSSS--EEEEEECCC------
T ss_pred ceeEEEECCCCCEEEEecCCceEEEEECCCCc---------eeeeec-CCCCceeEEecCCCc--eEEEeecCCCceEEE
Confidence 99999997 7799999999999999998876 444444 567899999999997 888888887
Q ss_pred --------eEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 314 --------KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 314 --------~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
.+++||..+++ .+..+. +|...|++++|+|++++|++++.||.|++|++++
T Consensus 288 ~~~~~~~~~i~~~d~~~~~--~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 288 TSANEGKFEARFYHKIFEE--EIGRVQ--GHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp -------CEEEEEETTTCC--EEEEEE--CCSSCEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred EecCCCcceeEEEecCCCc--chhhee--cccCcEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence 89999999884 455565 7889999999999999999999999999999863
No 26
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.1e-43 Score=302.96 Aligned_cols=305 Identities=14% Similarity=0.158 Sum_probs=239.8
Q ss_pred cceeeeeecccCCcCeEEEEEeeccCCCc-cEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecC-CC
Q 017553 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYF-NVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNV-DG 97 (369)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~~~~s~~~~~~~-~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~g 97 (369)
.++++...+.+|...|++++|+| ++ ++||+++.|+ |+|||+.+++....+.. ..|...|.+++|+ | ++
T Consensus 61 ~~~~~~~~~~~h~~~v~~~~~~~----~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~h~~~v~~~~~~--~~~~ 131 (383)
T 3ei3_B 61 KSYKLHRTASPFDRRVTSLEWHP----THPTTVAVGSKGGDIILWDYDVQNKTSFIQG---MGPGDAITGMKFN--QFNT 131 (383)
T ss_dssp TTCEEEEEECCCSSCEEEEEECS----SCTTEEEEEEBTSCEEEEETTSTTCEEEECC---CSTTCBEEEEEEE--TTEE
T ss_pred cccceEEeccCCCCCEEEEEECC----CCCCEEEEEcCCCeEEEEeCCCcccceeeec---CCcCCceeEEEeC--CCCC
Confidence 56777888999999999999999 56 8999999998 99999998877666542 2588899999998 8 45
Q ss_pred ccEEEEeecCCeEEEEEcCCccccceeec---cccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCC
Q 017553 98 IPFLVAGGINGIIRVIDVSNEKLHKSFVG---HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR 174 (369)
Q Consensus 98 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 174 (369)
. +|++++.||.|++||+.+ ..+..+.. |...|.+++|+| ++.+|++++.|+.|++||+ +++.+..+. +|.
T Consensus 132 ~-~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~-~~~~~~~~~---~h~ 204 (383)
T 3ei3_B 132 N-QLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSV-SRQMLATGDSTGRLLLLGL-DGHEIFKEK---LHK 204 (383)
T ss_dssp E-EEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEET-TTTEEEEEETTSEEEEEET-TSCEEEEEE---CSS
T ss_pred C-EEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECC-CCCEEEEECCCCCEEEEEC-CCCEEEEec---cCC
Confidence 5 999999999999999985 44555544 447899999999 8899999999999999999 577788887 799
Q ss_pred CcEEEEEecCCCce-EEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee---C
Q 017553 175 NEVLSVDFHPSDIY-RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---G 250 (369)
Q Consensus 175 ~~v~~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~ 250 (369)
..|.+++|+| ++. +|++++.|+.|++||+++.... ...+..+ .|...|.+++|+ +
T Consensus 205 ~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~-------------------~~~~~~~-~~~~~v~~~~~s~~~~ 263 (383)
T 3ei3_B 205 AKVTHAEFNP-RCDWLMATSSVDATVKLWDLRNIKDK-------------------NSYIAEM-PHEKPVNAAYFNPTDS 263 (383)
T ss_dssp SCEEEEEECS-SCTTEEEEEETTSEEEEEEGGGCCST-------------------TCEEEEE-ECSSCEEEEEECTTTS
T ss_pred CcEEEEEECC-CCCCEEEEEeCCCEEEEEeCCCCCcc-------------------cceEEEe-cCCCceEEEEEcCCCC
Confidence 9999999999 666 9999999999999999973210 1122223 689999999997 4
Q ss_pred cEEEEeecCCeEEEecCCCCCCCCCCCc--------cceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccC
Q 017553 251 DFILSKSVDNEIVLWEPKMKEQSPGEGT--------ADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS 322 (369)
Q Consensus 251 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~--------~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~ 322 (369)
++|++++.|+.|++||+++.+....... ...+...-.+...+..++|+|+++ + +++.||.|++||+.+
T Consensus 264 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~--~--s~s~d~~i~iwd~~~ 339 (383)
T 3ei3_B 264 TKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQ--L--LLNDKRTIDIYDANS 339 (383)
T ss_dssp CEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTT--T--CTTCCCCEEEEETTT
T ss_pred CEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCcc--c--ccCCCCeEEEEecCC
Confidence 7999999999999999998764211100 000000001123455577888875 3 888999999999998
Q ss_pred CCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCCC
Q 017553 323 SPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIPT 369 (369)
Q Consensus 323 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~~ 369 (369)
++ .+..+....+...+..++|+|++++|++|+ ||.|++||++++
T Consensus 340 ~~--~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~~ 383 (383)
T 3ei3_B 340 GG--LVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNREDT 383 (383)
T ss_dssp CC--EEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC--
T ss_pred Cc--eeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCCC
Confidence 84 456665334667888889999999999997 999999999864
No 27
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.4e-43 Score=289.94 Aligned_cols=286 Identities=16% Similarity=0.236 Sum_probs=246.6
Q ss_pred ccceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCc
Q 017553 20 KREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGI 98 (369)
Q Consensus 20 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~ 98 (369)
..++++.+.+.+|.+.|++++| | ++++|++++.|+ |++||+.++.....+. .|...|.+++|+ |++.
T Consensus 5 ~~~~~~~~~l~~h~~~v~~~~~-~----~~~~l~s~~~dg~v~vw~~~~~~~~~~~~-----~~~~~v~~~~~~--~~~~ 72 (313)
T 3odt_A 5 FTGYQLSATLKGHDQDVRDVVA-V----DDSKVASVSRDGTVRLWSKDDQWLGTVVY-----TGQGFLNSVCYD--SEKE 72 (313)
T ss_dssp CCCCEEEEEECCCSSCEEEEEE-E----ETTEEEEEETTSEEEEEEESSSEEEEEEE-----ECSSCEEEEEEE--TTTT
T ss_pred cccHHHHHHhhCCCCCcEEEEe-c----CCCEEEEEEcCCcEEEEECCCCEEEEEee-----cCCccEEEEEEC--CCCC
Confidence 4567888899999999999999 7 478999999999 9999998888777776 467899999998 8998
Q ss_pred cEEEEeecCCeEEEEEcCCc---cccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCC
Q 017553 99 PFLVAGGINGIIRVIDVSNE---KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRN 175 (369)
Q Consensus 99 ~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 175 (369)
+|++++.||.|++|++... +.+..+.+|...|.+++|. ++++++++.|+.|++|| .++....+. .|..
T Consensus 73 -~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d--~~~~~~~~~---~~~~ 143 (313)
T 3odt_A 73 -LLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWK--EGSLVYNLQ---AHNA 143 (313)
T ss_dssp -EEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEE--TTEEEEEEE---CCSS
T ss_pred -EEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEc--CCcEEEecc---cCCC
Confidence 9999999999999998765 5577888999999999994 46999999999999999 677777777 7999
Q ss_pred cEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeecc-CCCceeeeeee-CcEE
Q 017553 176 EVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV-HSNYVDCNRWL-GDFI 253 (369)
Q Consensus 176 ~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~-~~~l 253 (369)
.+.+++|.|.++.++++++.|+.|++||... ....+.. |...+.+++|+ ...+
T Consensus 144 ~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-------------------------~~~~~~~~~~~~i~~~~~~~~~~~ 198 (313)
T 3odt_A 144 SVWDAKVVSFSENKFLTASADKTIKLWQNDK-------------------------VIKTFSGIHNDVVRHLAVVDDGHF 198 (313)
T ss_dssp CEEEEEEEETTTTEEEEEETTSCEEEEETTE-------------------------EEEEECSSCSSCEEEEEEEETTEE
T ss_pred ceeEEEEccCCCCEEEEEECCCCEEEEecCc-------------------------eEEEEeccCcccEEEEEEcCCCeE
Confidence 9999999876788999999999999999543 2334444 88999999997 4459
Q ss_pred EEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeec
Q 017553 254 LSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSH 333 (369)
Q Consensus 254 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 333 (369)
++++.|+.|++||+++++ .+..+..|...+.+++|+|++ .+++++.||.|++||+.+++ ....+.
T Consensus 199 ~~~~~dg~i~i~d~~~~~---------~~~~~~~~~~~i~~~~~~~~~---~l~~~~~dg~v~iwd~~~~~--~~~~~~- 263 (313)
T 3odt_A 199 ISCSNDGLIKLVDMHTGD---------VLRTYEGHESFVYCIKLLPNG---DIVSCGEDRTVRIWSKENGS--LKQVIT- 263 (313)
T ss_dssp EEEETTSEEEEEETTTCC---------EEEEEECCSSCEEEEEECTTS---CEEEEETTSEEEEECTTTCC--EEEEEE-
T ss_pred EEccCCCeEEEEECCchh---------hhhhhhcCCceEEEEEEecCC---CEEEEecCCEEEEEECCCCc--eeEEEe-
Confidence 999999999999999876 677888889999999999998 48899999999999999984 455555
Q ss_pred CCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 334 AQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 334 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
.|...|.+++|+|+++ +++++.||.|++||+.+
T Consensus 264 -~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 264 -LPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEK 296 (313)
T ss_dssp -CSSSCEEEEEECTTSC-EEEEETTSCEEEEESCG
T ss_pred -ccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCC
Confidence 6778999999999998 56789999999999874
No 28
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=6.2e-44 Score=301.55 Aligned_cols=300 Identities=11% Similarity=0.191 Sum_probs=240.3
Q ss_pred eeeecccCCcCeEEEEEeeccCCCc-cEEEEecC---Cc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCC---
Q 017553 25 VTNKLQEGKRPLYAVVFNFIDSRYF-NVFATVGG---NR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD--- 96 (369)
Q Consensus 25 ~~~~~~~h~~~v~~~~~s~~~~~~~-~~la~~~~---~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--- 96 (369)
..+.+++|...|++++|+| ++ .++++++. |+ |+|||+.+++....... .|...|.+++|+ |+
T Consensus 10 ~~~~~~~h~~~v~~~~~~p----~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~----~~~~~v~~~~~~--~~~~~ 79 (357)
T 3i2n_A 10 IAHIQKGFNYTVFDCKWVP----CSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREI----EKAKPIKCGTFG--ATSLQ 79 (357)
T ss_dssp EEEEEEECSSCEEEEEECT----TSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEE----EESSCEEEEECT--TCCTT
T ss_pred hhhhccCCCCceEEEEEcC----CCceEEEecCccCCCcEEEEEeCCCCcccceeee----cccCcEEEEEEc--CCCCC
Confidence 3445678999999999999 45 45666665 66 99999998876544332 477899999998 76
Q ss_pred CccEEEEeecCCeEEEEEcCCcc-ccceeeccccceEEEE------ecCCCCceEEEEeCCCcEEEEEccCCc-EEEEee
Q 017553 97 GIPFLVAGGINGIIRVIDVSNEK-LHKSFVGHGDSINEIR------TQPLKPSLVVSASKDESVRLWNVQTGI-CILIFA 168 (369)
Q Consensus 97 g~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~------~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~ 168 (369)
|. +|++|+.||.|++||+.+++ .+..+.+|...|.+++ |+| ++++|++++.||.|++||+++++ .+..+.
T Consensus 80 ~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~ 157 (357)
T 3i2n_A 80 QR-YLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGE-GAPEIVTGSRDGTVKVWDPRQKDDPVANME 157 (357)
T ss_dssp TC-CEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC--CCCEEEEEETTSCEEEECTTSCSSCSEEEC
T ss_pred Cc-eEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCC-CccEEEEEeCCCeEEEEeCCCCCCcceecc
Confidence 56 89999999999999999888 8889999999999995 567 88899999999999999999887 666666
Q ss_pred ccCCC-CCcEEEEE----ecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCce
Q 017553 169 GAGGH-RNEVLSVD----FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV 243 (369)
Q Consensus 169 ~~~~~-~~~v~~~~----~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 243 (369)
...++ ...+.+++ |+| ++.++++++.|+.|++||++++. ......|...|
T Consensus 158 ~~~~~~~~~v~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~------------------------~~~~~~~~~~v 212 (357)
T 3i2n_A 158 PVQGENKRDCWTVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRNMA------------------------LRWETNIKNGV 212 (357)
T ss_dssp CCTTSCCCCEEEEEEECCCC--CCCEEEEEETTSEEEEEETTTTE------------------------EEEEEECSSCE
T ss_pred ccCCCCCCceEEEEEEeccCC-CCCEEEEEccCCeEEEEECccCc------------------------eeeecCCCCce
Confidence 32222 33899998 677 88999999999999999999842 12335678889
Q ss_pred eeeeee-----CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEE
Q 017553 244 DCNRWL-----GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW 318 (369)
Q Consensus 244 ~~~~~~-----~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~ 318 (369)
.++.|+ ++++++++.|+.|++||+++.+..... ....+..|...+.+++|+|+++ .++++++.||.|++|
T Consensus 213 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~iw 287 (357)
T 3i2n_A 213 CSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGF----ASVSEKAHKSTVWQVRHLPQNR-ELFLTAGGAGGLHLW 287 (357)
T ss_dssp EEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEE----EEEEEECCSSCEEEEEEETTEE-EEEEEEETTSEEEEE
T ss_pred EEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccce----eeeccCCCcCCEEEEEECCCCC-cEEEEEeCCCcEEEe
Confidence 999996 479999999999999999887531100 1123347888999999999985 379999999999999
Q ss_pred EccCCCce-----------------eEEEeecCCCccceEEEEecCCCCEEE-EeecCCeEEEEecCC
Q 017553 319 ELQSSPPV-----------------LIARLSHAQSKSPIRQTAMSYDGSTIL-SCCEDGAIWRWDAIP 368 (369)
Q Consensus 319 d~~~~~~~-----------------~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~dg~i~vw~~~~ 368 (369)
|+..+... .+..+. +|...|++++|+|++++|+ +++.||.|++||+.+
T Consensus 288 d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~ 353 (357)
T 3i2n_A 288 KYEYPIQRSKKDSEGIEMGVAGSVSLLQNVT--LSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK 353 (357)
T ss_dssp EEECCSCC--CCTTSCCCCCCCEEEEEEEEE--CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred ecCCCcccccccCCCCccccccccceeeccc--cCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence 99865432 344555 7889999999999999998 899999999999864
No 29
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.2e-43 Score=304.62 Aligned_cols=244 Identities=24% Similarity=0.366 Sum_probs=222.2
Q ss_pred CcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccC
Q 017553 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 160 (369)
Q Consensus 81 ~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 160 (369)
.|..+|++++|+ |++. +|++|+.||+|++||+.+++....+.+|.+.|.+++|+| ++.+|++|+.|++|++||+.+
T Consensus 106 gh~~~V~~~~~~--p~~~-~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~-~~~~l~sgs~D~~i~iwd~~~ 181 (410)
T 1vyh_C 106 GHRSPVTRVIFH--PVFS-VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH-SGKLLASCSADMTIKLWDFQG 181 (410)
T ss_dssp CCSSCEEEEEEC--SSSS-EEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECT-TSSEEEEEETTSCCCEEETTS
T ss_pred ccCCcEEEEEEc--CCCC-EEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCC
Confidence 588899999998 8998 999999999999999999999999999999999999999 889999999999999999999
Q ss_pred CcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCC
Q 017553 161 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 240 (369)
Q Consensus 161 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (369)
++++..+. +|...|.+++|+| ++.+|++|+.|++|++||+++ ...+..+..|.
T Consensus 182 ~~~~~~~~---~h~~~V~~v~~~p-~~~~l~s~s~D~~i~~wd~~~-----------------------~~~~~~~~~h~ 234 (410)
T 1vyh_C 182 FECIRTMH---GHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQT-----------------------GYCVKTFTGHR 234 (410)
T ss_dssp SCEEECCC---CCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTT-----------------------CCEEEEEECCS
T ss_pred CceeEEEc---CCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCC-----------------------CcEEEEEeCCC
Confidence 99888887 7999999999999 889999999999999999998 34466778899
Q ss_pred Cceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCC----------------
Q 017553 241 NYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFH---------------- 302 (369)
Q Consensus 241 ~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~---------------- 302 (369)
..|.++.++ +.++++++.|+.|++||+++.+ ....+..|...|.+++|+|++.
T Consensus 235 ~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~---------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (410)
T 1vyh_C 235 EWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE---------CKAELREHRHVVECISWAPESSYSSISEATGSETKKSG 305 (410)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCC---------EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-----
T ss_pred ccEEEEEECCCCCEEEEEcCCCeEEEEECCCCc---------eeeEecCCCceEEEEEEcCcccccchhhhccccccccC
Confidence 999999997 7899999999999999998876 5677888899999999999632
Q ss_pred --ccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 303 --YNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 303 --~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
..+|++|+.|+.|++||+.++ ..+..+. +|...|++++|+|++++|++|+.||.|++||+.+
T Consensus 306 ~~g~~l~sgs~D~~i~iwd~~~~--~~~~~~~--~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~ 369 (410)
T 1vyh_C 306 KPGPFLLSGSRDKTIKMWDVSTG--MCLMTLV--GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN 369 (410)
T ss_dssp --CCEEEEEETTSEEEEEETTTT--EEEEEEE--CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTT
T ss_pred CCCCEEEEEeCCCeEEEEECCCC--ceEEEEE--CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 248999999999999999988 4566666 8889999999999999999999999999999864
No 30
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.2e-43 Score=296.46 Aligned_cols=249 Identities=16% Similarity=0.164 Sum_probs=212.7
Q ss_pred cCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCe
Q 017553 31 EGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGI 109 (369)
Q Consensus 31 ~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~ 109 (369)
.|...|++++|+| + ..|++++.|+ |+|||+.+++.+..+... ...|...|++++|+ |+|+ +|++|+.||+
T Consensus 80 ~~~~~v~~~~~s~----d-~~l~~~s~dg~v~lWd~~~~~~~~~~~~~-~~~H~~~V~~v~~s--pdg~-~l~sgs~d~~ 150 (344)
T 4gqb_B 80 QTEAGVADLTWVG----E-RGILVASDSGAVELWELDENETLIVSKFC-KYEHDDIVSTVSVL--SSGT-QAVSGSKDIC 150 (344)
T ss_dssp EESSCEEEEEEET----T-TEEEEEETTSEEEEEEECTTSSCEEEEEE-EECCSSCEEEEEEC--TTSS-EEEEEETTSC
T ss_pred ccCCCEEEEEEeC----C-CeEEEEECCCEEEEEeccCCCceeEeecc-ccCCCCCEEEEEEC--CCCC-EEEEEeCCCe
Confidence 4667899999999 3 4677888888 999999998876655432 22588999999998 9999 9999999999
Q ss_pred EEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceE
Q 017553 110 IRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYR 189 (369)
Q Consensus 110 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 189 (369)
|++||+.+++++..+.+|.+.|.+++|+|++..+|++++.|++|++||+++++....+... .|...+.+++|+|.++++
T Consensus 151 i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~ 229 (344)
T 4gqb_B 151 IKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS-APGYLPTSLAWHPQQSEV 229 (344)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-----CCCEEEEEECSSCTTE
T ss_pred EEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecc-eeeccceeeeecCCCCcc
Confidence 9999999999999999999999999999955578999999999999999999988876521 456679999999977889
Q ss_pred EEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--C-cEEEEeecCCeEEEec
Q 017553 190 IASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--G-DFILSKSVDNEIVLWE 266 (369)
Q Consensus 190 l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~~~~~d~~i~i~d 266 (369)
|++|+.|++|++||+++ ..++..+.+|...|.+++|+ + .+|++++.|+.|++||
T Consensus 230 l~sg~~dg~v~~wd~~~-----------------------~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd 286 (344)
T 4gqb_B 230 FVFGDENGTVSLVDTKS-----------------------TSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLD 286 (344)
T ss_dssp EEEEETTSEEEEEESCC-------------------------CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEEC
T ss_pred eEEeccCCcEEEEECCC-----------------------CcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEE
Confidence 99999999999999998 34567788999999999997 4 5799999999999999
Q ss_pred CCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCC
Q 017553 267 PKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 323 (369)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~ 323 (369)
+++++ +..+..|...|.+++|+|+++ .+|++++.||+|++|++.+.
T Consensus 287 ~~~~~----------~~~~~~H~~~V~~v~~sp~~~-~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 287 SSLSE----------LFRSQAHRDFVRDATWSPLNH-SLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp TTCCE----------EEEECCCSSCEEEEEECSSST-TEEEEEETTSCEEEEECCC-
T ss_pred CCCCc----------EEEEcCCCCCEEEEEEeCCCC-eEEEEEcCCCeEEEEECCCC
Confidence 98764 445678999999999999987 47889999999999999875
No 31
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.3e-43 Score=299.77 Aligned_cols=306 Identities=16% Similarity=0.129 Sum_probs=243.2
Q ss_pred cccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCc--eeEEEeeeccCCcccceeEEEeeecCCCccEEEEee
Q 017553 29 LQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG--VIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG 105 (369)
Q Consensus 29 ~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~ 105 (369)
+..|.++|++++|+| ++++||+++.++ |++||+.+++ .+..+. .|...|.+++|+ |+++ +|++++
T Consensus 4 ~~~~~~~i~~~~~s~----~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~-----~h~~~v~~~~~~--~~~~-~l~~~~ 71 (372)
T 1k8k_C 4 HSFLVEPISCHAWNK----DRTQIAICPNNHEVHIYEKSGNKWVQVHELK-----EHNGQVTGVDWA--PDSN-RIVTCG 71 (372)
T ss_dssp EESCSSCCCEEEECT----TSSEEEEECSSSEEEEEEEETTEEEEEEEEE-----CCSSCEEEEEEE--TTTT-EEEEEE
T ss_pred ecccCCCeEEEEECC----CCCEEEEEeCCCEEEEEeCCCCcEEeeeeec-----CCCCcccEEEEe--CCCC-EEEEEc
Confidence 345999999999999 689999998888 9999998886 555555 578899999998 8898 999999
Q ss_pred cCCeEEEEEcCCccccce--eeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcE---EEEeeccCCCCCcEEEE
Q 017553 106 INGIIRVIDVSNEKLHKS--FVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC---ILIFAGAGGHRNEVLSV 180 (369)
Q Consensus 106 ~dg~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~~~~v~~~ 180 (369)
.||.|++||+.+++.... +..|...|.+++|+| ++.+|++++.|+.|++||++.++. ...+. .+|...|.++
T Consensus 72 ~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~--~~~~~~i~~~ 148 (372)
T 1k8k_C 72 TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIK--KPIRSTVLSL 148 (372)
T ss_dssp TTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEEC--TTCCSCEEEE
T ss_pred CCCeEEEEECCCCeeeeeEEeecCCCceeEEEECC-CCCEEEEEeCCCEEEEEEecCCCcceeeeeee--cccCCCeeEE
Confidence 999999999988765433 357899999999999 889999999999999999998773 22332 2689999999
Q ss_pred EecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeec
Q 017553 181 DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV 258 (369)
Q Consensus 181 ~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~ 258 (369)
+|+| ++.+|++++.|+.|++||++............. .........+..+..|...|.+++|+ ++++++++.
T Consensus 149 ~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 222 (372)
T 1k8k_C 149 DWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPW-----GSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH 222 (372)
T ss_dssp EECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTT-----BSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET
T ss_pred EEcC-CCCEEEEEcCCCCEEEEEccccccccccccccc-----ccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeC
Confidence 9999 889999999999999999864211100000000 00001134456677899999999997 779999999
Q ss_pred CCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccC--CCceeE--------
Q 017553 259 DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS--SPPVLI-------- 328 (369)
Q Consensus 259 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~-------- 328 (369)
|+.|++||+++.+ .+..+..+...+.+++|+|++. +++++ .|+.|++|++.+ ++....
T Consensus 223 d~~i~i~d~~~~~---------~~~~~~~~~~~v~~~~~~~~~~--~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~ 290 (372)
T 1k8k_C 223 DSTVCLADADKKM---------AVATLASETLPLLAVTFITESS--LVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQ 290 (372)
T ss_dssp TTEEEEEEGGGTT---------EEEEEECSSCCEEEEEEEETTE--EEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--
T ss_pred CCEEEEEECCCCc---------eeEEEccCCCCeEEEEEecCCC--EEEEE-eCCeEEEEEccCcCceEEEeeccCcccc
Confidence 9999999999876 6777888888999999999985 77776 899999999988 421110
Q ss_pred --------------------EE------ee-cCCCccceEEEEec-CCC---CEEEEeecCCeEEEEecC
Q 017553 329 --------------------AR------LS-HAQSKSPIRQTAMS-YDG---STILSCCEDGAIWRWDAI 367 (369)
Q Consensus 329 --------------------~~------~~-~~~~~~~v~~~~~s-~~~---~~l~s~~~dg~i~vw~~~ 367 (369)
.. .. ..+|..+|++++|+ ++| ++|++|+.||.|++|++.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~ 360 (372)
T 1k8k_C 291 SSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR 360 (372)
T ss_dssp ------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHH
T ss_pred chhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEec
Confidence 00 11 13788999999966 676 999999999999999975
No 32
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.6e-42 Score=311.43 Aligned_cols=299 Identities=24% Similarity=0.356 Sum_probs=253.7
Q ss_pred cccccccccccccccccceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcc
Q 017553 5 AIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKE 83 (369)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~ 83 (369)
++++.+....+.. ...+....+.+|...|++++|+| +++.|++++.++ |++|+ .+++....+. .|.
T Consensus 237 ~~~~~d~~i~~w~---~~~~~~~~~~~~~~~v~~v~~~~----d~~~l~~~~~d~~i~~w~-~~~~~~~~~~-----~h~ 303 (577)
T 2ymu_A 237 ASASDDKTVKLWN---RNGQLLQTLTGHSSSVNGVAFRP----DGQTIASASDDKTVKLWN-RNGQLLQTLT-----GHS 303 (577)
T ss_dssp EEEETTSCEEEEC---TTSCEEEEECCCSSCEEEEEECT----TSSEEEEEETTSCEEEEE-TTSCEEEEEC-----CCS
T ss_pred EEEeCCCEEEEEe---CCCCEEEEEecCCCCEEEEEEcC----CCCEEEEEeCCCEEEEEe-CCCcEEEEEe-----cCC
Confidence 4444444444433 23355667889999999999999 689999999988 99999 4566666555 577
Q ss_pred cceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcE
Q 017553 84 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC 163 (369)
Q Consensus 84 ~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 163 (369)
..|.+++|+ |+++ +|++++.||.|++||.. ++.+..+.+|...|.+++|+| ++..|++++.|+.|++||. +++.
T Consensus 304 ~~v~~~~~~--~~~~-~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~v~~~~~-~~~~ 377 (577)
T 2ymu_A 304 SSVWGVAFS--PDGQ-TIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNR-NGQL 377 (577)
T ss_dssp SCEEEEEEC--TTSS-EEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEET-TCCE
T ss_pred CCeEEEEEC--CCCC-EEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEcC-CCCE
Confidence 889999888 9998 99999999999999975 455677888999999999999 8999999999999999995 5777
Q ss_pred EEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCce
Q 017553 164 ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV 243 (369)
Q Consensus 164 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 243 (369)
+..+. +|...|.+++|+| ++++|++++.|+.|++||... ..+..+..|...|
T Consensus 378 ~~~~~---~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~~~~------------------------~~~~~~~~~~~~v 429 (577)
T 2ymu_A 378 LQTLT---GHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNG------------------------QLLQTLTGHSSSV 429 (577)
T ss_dssp EEEEE---CCSSCEEEEEECT-TSSCEEEEETTSEEEEECTTC------------------------CEEEEEECCSSCE
T ss_pred EEEec---CCCCCeEEEEECC-CCCEEEEEeCCCEEEEEeCCC------------------------CEEEEecCCCCCe
Confidence 77777 7999999999999 899999999999999999644 2355667899999
Q ss_pred eeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEcc
Q 017553 244 DCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ 321 (369)
Q Consensus 244 ~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~ 321 (369)
.+++|+ ++++++++.|+.|++||.... .+..+..|...+.+++|+|+++ +|++++.|+.|++||..
T Consensus 430 ~~~~~s~d~~~l~~~~~d~~v~~w~~~~~----------~~~~~~~~~~~v~~~~~spd~~--~las~~~d~~i~iw~~~ 497 (577)
T 2ymu_A 430 WGVAFSPDDQTIASASDDKTVKLWNRNGQ----------LLQTLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRN 497 (577)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTSC----------EEEEEECCSSCEEEEEECTTSC--EEEEEETTSEEEEEETT
T ss_pred EEEEECCCCCEEEEEcCCCEEEEEECCCC----------EEEEEcCCCCCEEEEEEcCCCC--EEEEEeCCCEEEEEcCC
Confidence 999997 779999999999999996432 5677788899999999999997 89999999999999964
Q ss_pred CCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecC
Q 017553 322 SSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 367 (369)
+ .....+. +|...|++++|+|+|++|++++.||.|++||..
T Consensus 498 -~--~~~~~~~--~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 498 -G--QLLQTLT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 538 (577)
T ss_dssp -S--CEEEEEE--CCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred -C--CEEEEEe--CCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC
Confidence 3 3556666 888999999999999999999999999999964
No 33
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-44 Score=311.44 Aligned_cols=295 Identities=17% Similarity=0.255 Sum_probs=243.4
Q ss_pred cCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecC----CceeEEEeeeccCCcccceeEEEeeecCC-CccEEEEe
Q 017553 31 EGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLE----GGVIAALQSYVDEDKEESFYTVSWACNVD-GIPFLVAG 104 (369)
Q Consensus 31 ~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-g~~~l~~~ 104 (369)
.|...|++++|+| ++++|++++.|+ |++|++.+ .+....+. .|...|.+++|+ |+ +. +|+++
T Consensus 65 ~~~~~v~~~~~s~----~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~-----~h~~~v~~~~~~--~~~~~-~l~s~ 132 (416)
T 2pm9_A 65 QVDSKFNDLDWSH----NNKIIAGALDNGSLELYSTNEANNAINSMARFS-----NHSSSVKTVKFN--AKQDN-VLASG 132 (416)
T ss_dssp CCSSCEEEEEECS----SSSCEEEEESSSCEEEECCSSTTSCCCEEEECC-----CSSSCCCEEEEC--SSSTT-BEEEE
T ss_pred ecCCceEEEEECC----CCCeEEEEccCCeEEEeecccccccccchhhcc-----CCccceEEEEEc--CCCCC-EEEEE
Confidence 6899999999999 689999999888 99999887 23444444 578899999998 87 55 99999
Q ss_pred ecCCeEEEEEcCCcc------ccc---eeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccC---C
Q 017553 105 GINGIIRVIDVSNEK------LHK---SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAG---G 172 (369)
Q Consensus 105 ~~dg~i~vwd~~~~~------~~~---~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---~ 172 (369)
+.||.|++||+.+++ ... .+..|...|.+++|+|+++.+|++++.|+.|++||+++++.+..+.... +
T Consensus 133 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 212 (416)
T 2pm9_A 133 GNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSG 212 (416)
T ss_dssp CSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSC
T ss_pred cCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccc
Confidence 999999999998876 332 3467999999999999448899999999999999999999888887311 1
Q ss_pred CCCcEEEEEecCCCceEEEEEeeCC---cEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeec-cCCCceeeeee
Q 017553 173 HRNEVLSVDFHPSDIYRIASCGMDN---TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS-VHSNYVDCNRW 248 (369)
Q Consensus 173 ~~~~v~~~~~~~~~~~~l~~~~~d~---~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~ 248 (369)
|...|.+++|+|++..++++++.|+ .|++||++++. .+...+. .|...|.+++|
T Consensus 213 ~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~----------------------~~~~~~~~~~~~~v~~~~~ 270 (416)
T 2pm9_A 213 IKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN----------------------TPLQTLNQGHQKGILSLDW 270 (416)
T ss_dssp CCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT----------------------SCSBCCCSCCSSCEEEEEE
T ss_pred cCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC----------------------CCcEEeecCccCceeEEEe
Confidence 2789999999994457899999998 99999999831 2344555 79999999999
Q ss_pred e---CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCc
Q 017553 249 L---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP 325 (369)
Q Consensus 249 ~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~ 325 (369)
+ ++++++++.|+.|++||+++.+ .+..+..|...+.+++|+|+++ .+|++++.||.|++||+.+...
T Consensus 271 s~~~~~~l~s~~~dg~v~~wd~~~~~---------~~~~~~~~~~~v~~~~~s~~~~-~~l~s~~~d~~i~iw~~~~~~~ 340 (416)
T 2pm9_A 271 CHQDEHLLLSSGRDNTVLLWNPESAE---------QLSQFPARGNWCFKTKFAPEAP-DLFACASFDNKIEVQTLQNLTN 340 (416)
T ss_dssp CSSCSSCEEEEESSSEEEEECSSSCC---------EEEEEECSSSCCCCEEECTTCT-TEEEECCSSSEEEEEESCCCCC
T ss_pred CCCCCCeEEEEeCCCCEEEeeCCCCc---------cceeecCCCCceEEEEECCCCC-CEEEEEecCCcEEEEEccCCCC
Confidence 5 6799999999999999999876 6788888899999999999984 3899999999999999987643
Q ss_pred eeEE-------------EeecC------------------CCccceEEEEecCCCCEEEEeecCCeEEEEecCCC
Q 017553 326 VLIA-------------RLSHA------------------QSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIPT 369 (369)
Q Consensus 326 ~~~~-------------~~~~~------------------~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~~ 369 (369)
.... .+.+. .+..++.+++|+|+|++|++++.||.|+||++.++
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 341 TLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp SSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred CcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 2111 01111 15678889999999999999999999999999875
No 34
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-43 Score=302.20 Aligned_cols=292 Identities=21% Similarity=0.246 Sum_probs=238.2
Q ss_pred ccCCcCeEEEEEeeccCCCcc-EEEEecCCc-EEEEEe----cCCc------eeEEEeeeccCC-----cccceeEEEee
Q 017553 30 QEGKRPLYAVVFNFIDSRYFN-VFATVGGNR-VTVYQC----LEGG------VIAALQSYVDED-----KEESFYTVSWA 92 (369)
Q Consensus 30 ~~h~~~v~~~~~s~~~~~~~~-~la~~~~~~-v~iw~~----~~~~------~~~~~~~~~~~~-----~~~~v~~~~~~ 92 (369)
..|.++|++++|+| ++. +||+++.|+ |++|++ .+++ ....+....... |...|.+++|+
T Consensus 42 ~~~~~~v~~~~~s~----~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 117 (425)
T 1r5m_A 42 IVKLDNIVSSTWNP----LDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWS 117 (425)
T ss_dssp EEECSCCSEEEECS----SCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEEC
T ss_pred eeccCceEEEEECC----CCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEc
Confidence 45679999999999 578 999999988 999999 8777 344444322211 57799999998
Q ss_pred ecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeec---
Q 017553 93 CNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAG--- 169 (369)
Q Consensus 93 ~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--- 169 (369)
|+++ +|++|+.||.|++|| .+++.+..+..|...|.+++|+| ++.+|++++.|+.|++||+.+++.+..+..
T Consensus 118 --~~~~-~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 192 (425)
T 1r5m_A 118 --HDGN-SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNK-DGTHIISMDVENVTILWNVISGTVMQHFELKET 192 (425)
T ss_dssp --TTSS-EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECT-TSSEEEEEETTCCEEEEETTTTEEEEEECCC--
T ss_pred --CCCC-EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECC-CCCEEEEEecCCeEEEEECCCCcEEEEeecccc
Confidence 8998 999999999999999 67788889999999999999999 889999999999999999988876654431
Q ss_pred --------------------------------------------------cCCCCCcEEEEEecCCCceEEEEEeeCCcE
Q 017553 170 --------------------------------------------------AGGHRNEVLSVDFHPSDIYRIASCGMDNTV 199 (369)
Q Consensus 170 --------------------------------------------------~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v 199 (369)
...|...|.+++|+| ++.+|++++.|+.|
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i 271 (425)
T 1r5m_A 193 GGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND-TNKLLLSASDDGTL 271 (425)
T ss_dssp -------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEET-TTTEEEEEETTSCE
T ss_pred CccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECC-CCCEEEEEcCCCEE
Confidence 114667777888887 66777788888888
Q ss_pred EEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeeeC-cEEEEeecCCeEEEecCCCCCCCCCCCc
Q 017553 200 KIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLG-DFILSKSVDNEIVLWEPKMKEQSPGEGT 278 (369)
Q Consensus 200 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 278 (369)
++||++. ...+..+..|...+.++.|++ .++++++.|+.|++||+++.+
T Consensus 272 ~i~d~~~-----------------------~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~------- 321 (425)
T 1r5m_A 272 RIWHGGN-----------------------GNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNT------- 321 (425)
T ss_dssp EEECSSS-----------------------BSCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTE-------
T ss_pred EEEECCC-----------------------CccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCc-------
Confidence 8888776 334556677999999999983 299999999999999998776
Q ss_pred cceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCc------------------eeEEEeecCCCcc--
Q 017553 279 ADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP------------------VLIARLSHAQSKS-- 338 (369)
Q Consensus 279 ~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~------------------~~~~~~~~~~~~~-- 338 (369)
.+..+..+...+.+++|+|+++ +|++++.||.|++||+.+++. ..+..+. .|..
T Consensus 322 --~~~~~~~~~~~i~~~~~s~~~~--~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 395 (425)
T 1r5m_A 322 --LLALSIVDGVPIFAGRISQDGQ--KYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQ--SSQDND 395 (425)
T ss_dssp --EEEEEECTTCCEEEEEECTTSS--EEEEEETTSCEEEEECHHHHC--------------CEECCEEEEEC--CTTCCC
T ss_pred --EeEecccCCccEEEEEEcCCCC--EEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhc--CcccCC
Confidence 6777778888999999999986 899999999999999987630 1455555 6655
Q ss_pred ceEEEEecCCCCEEEEeecCCeEEEEecC
Q 017553 339 PIRQTAMSYDGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 339 ~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 367 (369)
.|++++|+|++++|++++.||.|++|+++
T Consensus 396 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 396 YIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp CEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred ceEEEEccCCCceEEEEecCceEEEEeec
Confidence 99999999999999999999999999986
No 35
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.9e-42 Score=294.86 Aligned_cols=282 Identities=21% Similarity=0.364 Sum_probs=236.0
Q ss_pred ccCCcCeEE--EEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeec
Q 017553 30 QEGKRPLYA--VVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI 106 (369)
Q Consensus 30 ~~h~~~v~~--~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~ 106 (369)
.+|...++. +.|++ +. +++++.++ |++||+.+++....+.. .|...|.+++|+ |++. +|++|+.
T Consensus 88 ~~~~~~~~~~~~~~s~-----~~-l~~~~~d~~v~lw~~~~~~~~~~~~~----~~~~~v~~v~~s--~~~~-~l~~~~~ 154 (401)
T 4aez_A 88 PGIIDDYYLNLLDWSN-----LN-VVAVALERNVYVWNADSGSVSALAET----DESTYVASVKWS--HDGS-FLSVGLG 154 (401)
T ss_dssp TTCCCCTTCBCEEECT-----TS-EEEEEETTEEEEEETTTCCEEEEEEC----CTTCCEEEEEEC--TTSS-EEEEEET
T ss_pred CCCcCCceEEEEeecC-----CC-EEEEECCCeEEEeeCCCCcEeEeeec----CCCCCEEEEEEC--CCCC-EEEEECC
Confidence 466666444 55554 34 45555555 99999999887776653 378899999998 8998 9999999
Q ss_pred CCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEcc-CCcEEEEeeccCCCCCcEEEEEecCC
Q 017553 107 NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ-TGICILIFAGAGGHRNEVLSVDFHPS 185 (369)
Q Consensus 107 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~ 185 (369)
||.|++||+.+++.+..+.+|...|.+++|++ .+|++++.||.|++||++ .+..+..+. +|...|.+++|+|
T Consensus 155 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~~- 227 (401)
T 4aez_A 155 NGLVDIYDVESQTKLRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTLQ---GHSSEVCGLAWRS- 227 (401)
T ss_dssp TSCEEEEETTTCCEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEE---CCSSCEEEEEECT-
T ss_pred CCeEEEEECcCCeEEEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcceeeEEc---CCCCCeeEEEEcC-
Confidence 99999999999999999999999999999954 699999999999999998 456677776 7999999999999
Q ss_pred CceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--C-cEEEEee--cCC
Q 017553 186 DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--G-DFILSKS--VDN 260 (369)
Q Consensus 186 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~~~~--~d~ 260 (369)
++.+|++++.|+.|++||+++ ..+...+..|...|.+++|+ + .++++++ .|+
T Consensus 228 ~~~~l~s~~~d~~v~iwd~~~-----------------------~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~ 284 (401)
T 4aez_A 228 DGLQLASGGNDNVVQIWDARS-----------------------SIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDK 284 (401)
T ss_dssp TSSEEEEEETTSCEEEEETTC-----------------------SSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTC
T ss_pred CCCEEEEEeCCCeEEEccCCC-----------------------CCccEEecCCcceEEEEEECCCCCCEEEEecCCCCC
Confidence 899999999999999999998 34556677899999999998 3 4666655 799
Q ss_pred eEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEE--ecCCCeEEEEEccCCCceeEEEeecCCCcc
Q 017553 261 EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAI--GNREGKIFVWELQSSPPVLIARLSHAQSKS 338 (369)
Q Consensus 261 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 338 (369)
.|++||+++++ .+..+. +...+.+++|+|+++ ++++ |+.||.|++||+.+++......+. +|..
T Consensus 285 ~i~i~d~~~~~---------~~~~~~-~~~~v~~~~~s~~~~--~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~--~h~~ 350 (401)
T 4aez_A 285 QIHFWNAATGA---------RVNTVD-AGSQVTSLIWSPHSK--EIMSTHGFPDNNLSIWSYSSSGLTKQVDIP--AHDT 350 (401)
T ss_dssp EEEEEETTTCC---------EEEEEE-CSSCEEEEEECSSSS--EEEEEECTTTCEEEEEEEETTEEEEEEEEE--CCSS
T ss_pred EEEEEECCCCC---------EEEEEe-CCCcEEEEEECCCCC--eEEEEeecCCCcEEEEecCCccceeEEEec--CCCC
Confidence 99999999876 445544 456799999999997 6666 668999999999987555555555 8889
Q ss_pred ceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 339 PIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 339 ~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
.|.+++|+|++++|++++.||.|++|++.+
T Consensus 351 ~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 351 RVLYSALSPDGRILSTAASDENLKFWRVYD 380 (401)
T ss_dssp CCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred CEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 999999999999999999999999999865
No 36
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.7e-43 Score=306.32 Aligned_cols=309 Identities=15% Similarity=0.156 Sum_probs=225.4
Q ss_pred cceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecC-CCc
Q 017553 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNV-DGI 98 (369)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~g~ 98 (369)
..+++.....+|...|+||+|+|. ++++||+|+.|+ |+|||+.+++....+.. ..|...|.+++|+ | ++.
T Consensus 107 ~~~~~~~~~~~~~~~V~~l~~~P~---~~~~lasGs~dg~i~lWd~~~~~~~~~~~~---~gH~~~V~~l~f~--p~~~~ 178 (435)
T 4e54_B 107 DSYRILQKAAPFDRRATSLAWHPT---HPSTVAVGSKGGDIMLWNFGIKDKPTFIKG---IGAGGSITGLKFN--PLNTN 178 (435)
T ss_dssp TTTTSCCEEEECSSCEEEEEECSS---CTTCEEEEETTSCEEEECSSCCSCCEEECC---CSSSCCCCEEEEC--SSCTT
T ss_pred cceeecccCCCCCCCEEEEEEeCC---CCCEEEEEeCCCEEEEEECCCCCceeEEEc---cCCCCCEEEEEEe--CCCCC
Confidence 345555666789999999999995 368999999999 99999987765554432 2588999999998 7 455
Q ss_pred cEEEEeecCCeEEEEEcCCccccceee--ccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCc
Q 017553 99 PFLVAGGINGIIRVIDVSNEKLHKSFV--GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNE 176 (369)
Q Consensus 99 ~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 176 (369)
+|++|+.||+|++||++++....... .+...+.+++|+| ++.+|++|+.||.|++||++. +.+..+. +|...
T Consensus 179 -~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~dg~i~~wd~~~-~~~~~~~---~h~~~ 252 (435)
T 4e54_B 179 -QFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSA-SSRMVVTGDNVGNVILLNMDG-KELWNLR---MHKKK 252 (435)
T ss_dssp -EEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEET-TTTEEEEECSSSBEEEEESSS-CBCCCSB---CCSSC
T ss_pred -EEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECC-CCCEEEEEeCCCcEeeeccCc-ceeEEEe---cccce
Confidence 99999999999999997654433222 2344678999999 899999999999999999864 4555555 79999
Q ss_pred EEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEE
Q 017553 177 VLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFIL 254 (369)
Q Consensus 177 v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~ 254 (369)
|.+++|+|.+..++++++.|+.|++||++.... .........|...|.+++|+ +++|+
T Consensus 253 v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~--------------------~~~~~~~~~h~~~v~~~~~spdg~~l~ 312 (435)
T 4e54_B 253 VTHVALNPCCDWFLATASVDQTVKIWDLRQVRG--------------------KASFLYSLPHRHPVNAACFSPDGARLL 312 (435)
T ss_dssp EEEEEECTTCSSEEEEEETTSBCCEEETTTCCS--------------------SSCCSBCCBCSSCEEECCBCTTSSEEE
T ss_pred EEeeeecCCCceEEEEecCcceeeEEecccccc--------------------cceEEEeeeccccccceeECCCCCeeE
Confidence 999999995667899999999999999987321 11223345789999999997 78999
Q ss_pred EeecCCeEEEecCCCCCCCCCCC--------ccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCce
Q 017553 255 SKSVDNEIVLWEPKMKEQSPGEG--------TADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPV 326 (369)
Q Consensus 255 ~~~~d~~i~i~d~~~~~~~~~~~--------~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 326 (369)
+++.|+.|++||+++.+...... ....+.....+...+..+.+++++. .+++++..++.|++||..+++
T Consensus 313 s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~i~iwd~~~g~-- 389 (435)
T 4e54_B 313 TTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPN-FKSCTPYELRTIDVFDGNSGK-- 389 (435)
T ss_dssp EEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTT-SCCSSTTCCCCEEEECSSSCC--
T ss_pred EEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCC-eEEEEecCCCEEEEEECCCCc--
Confidence 99999999999998875311000 0000000001112223333344443 122333455689999999985
Q ss_pred eEEEeecCCCccceEEE-EecCCCCEEEEeecCCeEEEEecCC
Q 017553 327 LIARLSHAQSKSPIRQT-AMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 327 ~~~~~~~~~~~~~v~~~-~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
.+..+. .+|...|.++ +|+|+|++|++|+ |+.|+||++++
T Consensus 390 ~~~~l~-~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~ 430 (435)
T 4e54_B 390 MMCQLY-DPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQE 430 (435)
T ss_dssp EEEEEC-CSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-
T ss_pred EEEEEe-CCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCc
Confidence 344432 2566788887 6999999999876 78999999875
No 37
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=9.1e-42 Score=294.26 Aligned_cols=282 Identities=21% Similarity=0.345 Sum_probs=236.6
Q ss_pred eEEEEEeeccCCCccEEEEecCCcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEc
Q 017553 36 LYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDV 115 (369)
Q Consensus 36 v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~ 115 (369)
++.|+||+ +++||+|.++.|+|||..+++....+... .|...|.+++|+ |+|+ +|++|+.||.|++||+
T Consensus 108 ~~~l~wS~-----~n~lAvgld~tV~lWd~~tg~~~~~~~~~---~~~~~V~sv~fs--pdg~-~lasgs~Dg~v~iWd~ 176 (420)
T 4gga_A 108 LNLVDWSS-----GNVLAVALDNSVYLWSASSGDILQLLQME---QPGEYISSVAWI--KEGN-YLAVGTSSAEVQLWDV 176 (420)
T ss_dssp CBCEEECT-----TSEEEEEETTEEEEEETTTCCEEEEEECC---STTCCEEEEEEC--TTSS-EEEEEETTSCEEEEET
T ss_pred ceeEEECC-----CCEEEEEeCCEEEEEECCCCCEEEEEEec---CCCCcEEEEEEC--CCCC-EEEEEECCCeEEEEEc
Confidence 67799998 57899988666999999999887776643 577889999998 9999 9999999999999999
Q ss_pred CCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCc-EEEEeeccCCCCCcEEEEEecCCCceEEEEEe
Q 017553 116 SNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI-CILIFAGAGGHRNEVLSVDFHPSDIYRIASCG 194 (369)
Q Consensus 116 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 194 (369)
.+++.+..+.+|...+.++.+++ .+|++|+.|+.+++||..... .+..+. +|...+..+.++| ++.++++++
T Consensus 177 ~~~~~~~~~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~~~~~~~---~h~~~~~~~~~~~-~g~~l~s~~ 249 (420)
T 4gga_A 177 QQQKRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLS---GHSQEVCGLRWAP-DGRHLASGG 249 (420)
T ss_dssp TTTEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEE---CCSSCEEEEEECT-TSSEEEEEE
T ss_pred CCCcEEEEEeCCCCceEEEeeCC---CEEEEEeCCCceeEeeecccceeeEEec---ccccceeeeeecC-CCCeeeeee
Confidence 99999999999999999998854 799999999999999988654 455566 7999999999999 889999999
Q ss_pred eCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee---CcEEEE--eecCCeEEEecCCC
Q 017553 195 MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILS--KSVDNEIVLWEPKM 269 (369)
Q Consensus 195 ~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~--~~~d~~i~i~d~~~ 269 (369)
.|+.+++|+...++.. ...+.....|...|.+++|+ +..+++ |+.|+.|++||+.+
T Consensus 250 ~D~~v~i~~~~~~~~~-------------------~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t 310 (420)
T 4gga_A 250 NDNLVNVWPSAPGEGG-------------------WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS 310 (420)
T ss_dssp TTSCEEEEESSCCSSC-------------------SCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTT
T ss_pred ccccceEEeecccccc-------------------ceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCc
Confidence 9999999999874211 22345667889999999997 446655 45799999999998
Q ss_pred CCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCC
Q 017553 270 KEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDG 349 (369)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 349 (369)
++ .+..+..+ ..+.++.|+++++..++++|+.|+.|++||+.++ ..+..+. +|.+.|++++|+|||
T Consensus 311 ~~---------~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~--~~v~~l~--gH~~~V~~l~~spdg 376 (420)
T 4gga_A 311 GA---------CLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM--AKVAELK--GHTSRVLSLTMSPDG 376 (420)
T ss_dssp TE---------EEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC--CEEEEEC--CCSSCEEEEEECTTS
T ss_pred cc---------cceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCC--cEEEEEc--CCCCCEEEEEEcCCC
Confidence 76 44444443 5788999999997433344568999999999988 4566776 899999999999999
Q ss_pred CEEEEeecCCeEEEEecCC
Q 017553 350 STILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 350 ~~l~s~~~dg~i~vw~~~~ 368 (369)
++|+||+.|++|+|||+.+
T Consensus 377 ~~l~S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 377 ATVASAAADETLRLWRCFE 395 (420)
T ss_dssp SCEEEEETTTEEEEECCSC
T ss_pred CEEEEEecCCeEEEEECCC
Confidence 9999999999999999853
No 38
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=3.1e-41 Score=293.32 Aligned_cols=301 Identities=17% Similarity=0.292 Sum_probs=256.0
Q ss_pred ccccccccccccccccccceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCc
Q 017553 4 TAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDK 82 (369)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~ 82 (369)
+++|+.+....+. +....+....+.+|.+.|++++|++ +++++++.|+ |++||+.+++.+..+. .|
T Consensus 132 l~sg~~dg~i~vw--d~~~~~~~~~~~~h~~~v~~~~~~~------~~l~s~~~dg~i~vwd~~~~~~~~~~~-----~h 198 (445)
T 2ovr_B 132 IVSGSDDNTLKVW--SAVTGKCLRTLVGHTGGVWSSQMRD------NIIISGSTDRTLKVWNAETGECIHTLY-----GH 198 (445)
T ss_dssp EEEEETTSCEEEE--ETTTCCEEEECCCCSSCEEEEEEET------TEEEEEETTSCEEEEETTTTEEEEEEC-----CC
T ss_pred EEEEECCCcEEEE--ECCCCcEEEEEcCCCCCEEEEEecC------CEEEEEeCCCeEEEEECCcCcEEEEEC-----CC
Confidence 4455555544444 3445667778899999999999985 6899999988 9999999998877776 57
Q ss_pred ccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCc
Q 017553 83 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI 162 (369)
Q Consensus 83 ~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 162 (369)
...|.+++|. +. .+++|+.||.|++||+.+++.+..+.+|...|.+++| ++..+++|+.||.|++||+++++
T Consensus 199 ~~~v~~~~~~----~~-~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~iwd~~~~~ 270 (445)
T 2ovr_B 199 TSTVRCMHLH----EK-RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY---DGRRVVSGAYDFMVKVWDPETET 270 (445)
T ss_dssp SSCEEEEEEE----TT-EEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE---CSSCEEEEETTSCEEEEEGGGTE
T ss_pred CCcEEEEEec----CC-EEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE---CCCEEEEEcCCCEEEEEECCCCc
Confidence 7889988885 34 7999999999999999999999999999999999999 46789999999999999999999
Q ss_pred EEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCc
Q 017553 163 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY 242 (369)
Q Consensus 163 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (369)
.+..+. +|...|.+++| ++.++++++.|+.|++||+++ ...+..+..|...
T Consensus 271 ~~~~~~---~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~~-----------------------~~~~~~~~~~~~~ 321 (445)
T 2ovr_B 271 CLHTLQ---GHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVET-----------------------GNCIHTLTGHQSL 321 (445)
T ss_dssp EEEEEC---CCSSCEEEEEE---CSSEEEEEETTSCEEEEETTT-----------------------CCEEEEECCCCSC
T ss_pred EeEEec---CCCCceEEEEE---CCCEEEEEeCCCeEEEEECCC-----------------------CCEEEEEcCCccc
Confidence 998888 79999999999 457899999999999999998 3345667789999
Q ss_pred eeeeeeeCcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccC---CCCCeeEEEEeecCCccEEEEecCCCeEEEEE
Q 017553 243 VDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV---PECDIWFIKFSCDFHYNAAAIGNREGKIFVWE 319 (369)
Q Consensus 243 v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d 319 (369)
+.++.++++++++++.||.|++||+++++ .+..+.. +...|.+++|++ .++++|+.||.|++||
T Consensus 322 v~~~~~~~~~l~~~~~dg~i~vwd~~~~~---------~~~~~~~~~~~~~~v~~~~~~~----~~l~s~~~dg~v~iwd 388 (445)
T 2ovr_B 322 TSGMELKDNILVSGNADSTVKIWDIKTGQ---------CLQTLQGPNKHQSAVTCLQFNK----NFVITSSDDGTVKLWD 388 (445)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTCC---------EEEEECSTTSCSSCEEEEEECS----SEEEEEETTSEEEEEE
T ss_pred EEEEEEeCCEEEEEeCCCeEEEEECCCCc---------EEEEEccCCCCCCCEEEEEECC----CEEEEEeCCCeEEEEE
Confidence 99999999999999999999999998776 4555554 778899999863 3899999999999999
Q ss_pred ccCCCceeEEEe---ecCCCccceEEEEecCCCCEEEEeecCCe----EEEEecCCC
Q 017553 320 LQSSPPVLIARL---SHAQSKSPIRQTAMSYDGSTILSCCEDGA----IWRWDAIPT 369 (369)
Q Consensus 320 ~~~~~~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~s~~~dg~----i~vw~~~~~ 369 (369)
+.+++ .+..+ ...++.+.|.+++|+|++.+|++|+.||. |.|||+..+
T Consensus 389 ~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 389 LKTGE--FIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp TTTCC--EEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred CCCCc--eeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 99985 34444 12367789999999999999999999997 999999864
No 39
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-43 Score=305.49 Aligned_cols=289 Identities=13% Similarity=0.223 Sum_probs=239.7
Q ss_pred CcCeEEEEEeeccCCCcc-EEEEe----------cCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccE
Q 017553 33 KRPLYAVVFNFIDSRYFN-VFATV----------GGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF 100 (369)
Q Consensus 33 ~~~v~~~~~s~~~~~~~~-~la~~----------~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~ 100 (369)
...|.+++|+| ++. +||++ +.|+ |+|||+.++.....+... .|...|.+++|+ |++. +
T Consensus 12 ~~~v~~~~~sp----~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~---~~~~~v~~~~~s--~~~~-~ 81 (416)
T 2pm9_A 12 FSRTATFAWSH----DKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL---QVDSKFNDLDWS--HNNK-I 81 (416)
T ss_dssp EEESCBCCBCS----SSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC---CCSSCEEEEEEC--SSSS-C
T ss_pred hhhcceEeeCC----CCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE---ecCCceEEEEEC--CCCC-e
Confidence 35789999999 455 99999 7777 999999887643222222 477889999998 8998 9
Q ss_pred EEEeecCCeEEEEEcCC----ccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCc------EEEEeecc
Q 017553 101 LVAGGINGIIRVIDVSN----EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI------CILIFAGA 170 (369)
Q Consensus 101 l~~~~~dg~i~vwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~------~~~~~~~~ 170 (369)
|++|+.||.|++||+.+ .+.+..+.+|...|.+++|+|+++.+|++++.|+.|++||+.+++ ....+...
T Consensus 82 l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 161 (416)
T 2pm9_A 82 IAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQS 161 (416)
T ss_dssp EEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCS
T ss_pred EEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccc
Confidence 99999999999999987 357788889999999999999448999999999999999999886 44433223
Q ss_pred CCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeecc------CCCcee
Q 017553 171 GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV------HSNYVD 244 (369)
Q Consensus 171 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~ 244 (369)
..|...|.+++|+|+++.+|++++.|+.|++||++++.. +..+.. |...+.
T Consensus 162 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~-----------------------~~~~~~~~~~~~~~~~v~ 218 (416)
T 2pm9_A 162 MSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE-----------------------VIHLSYTSPNSGIKQQLS 218 (416)
T ss_dssp CCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE-----------------------EEEECCCCCSSCCCCCEE
T ss_pred cCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc-----------------------ceEEeccccccccCCceE
Confidence 379999999999994488999999999999999998432 333333 378899
Q ss_pred eeeee--C-cEEEEeecCC---eEEEecCCCCCCCCCCCccceeeecc-CCCCCeeEEEEee-cCCccEEEEecCCCeEE
Q 017553 245 CNRWL--G-DFILSKSVDN---EIVLWEPKMKEQSPGEGTADILQKYP-VPECDIWFIKFSC-DFHYNAAAIGNREGKIF 316 (369)
Q Consensus 245 ~~~~~--~-~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~s~-~~~~~~l~~~~~dg~i~ 316 (369)
+++|+ + .++++++.|+ .|++||+++... .+..+. .|...+.+++|+| +++ +|++++.||.|+
T Consensus 219 ~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~--------~~~~~~~~~~~~v~~~~~s~~~~~--~l~s~~~dg~v~ 288 (416)
T 2pm9_A 219 VVEWHPKNSTRVATATGSDNDPSILIWDLRNANT--------PLQTLNQGHQKGILSLDWCHQDEH--LLLSSGRDNTVL 288 (416)
T ss_dssp EEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS--------CSBCCCSCCSSCEEEEEECSSCSS--CEEEEESSSEEE
T ss_pred EEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC--------CcEEeecCccCceeEEEeCCCCCC--eEEEEeCCCCEE
Confidence 99998 3 5899999998 999999998642 455566 7888999999999 665 899999999999
Q ss_pred EEEccCCCceeEEEeecCCCccceEEEEecCCC-CEEEEeecCCeEEEEecCC
Q 017553 317 VWELQSSPPVLIARLSHAQSKSPIRQTAMSYDG-STILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 317 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~vw~~~~ 368 (369)
+||+.+++ .+..+. .|...|.+++|+|++ .+|++++.||.|++|++.+
T Consensus 289 ~wd~~~~~--~~~~~~--~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~ 337 (416)
T 2pm9_A 289 LWNPESAE--QLSQFP--ARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQN 337 (416)
T ss_dssp EECSSSCC--EEEEEE--CSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCC
T ss_pred EeeCCCCc--cceeec--CCCCceEEEEECCCCCCEEEEEecCCcEEEEEccC
Confidence 99999884 556666 788899999999999 8999999999999999864
No 40
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-43 Score=302.26 Aligned_cols=307 Identities=14% Similarity=0.104 Sum_probs=227.0
Q ss_pred cccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCC--ceeEEEeeeccCCcccceeEEEeeecCCCccEEEEee
Q 017553 29 LQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEG--GVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG 105 (369)
Q Consensus 29 ~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~ 105 (369)
++.|.++|++++|+| ++++||+++.|+ |+|||+.++ +....+. .|...|.+++|+ |+++ +|++++
T Consensus 7 ~~~~~~~v~~~~~s~----~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~-----~h~~~v~~~~~s--~~~~-~l~s~s 74 (377)
T 3dwl_C 7 LHILPKPSYEHAFNS----QRTEFVTTTATNQVELYEQDGNGWKHARTFS-----DHDKIVTCVDWA--PKSN-RIVTCS 74 (377)
T ss_dssp EEECSSCCSCCEECS----SSSEEECCCSSSCBCEEEEETTEEEECCCBC-----CCSSCEEEEEEC--TTTC-CEEEEE
T ss_pred EecCCCcEEEEEECC----CCCEEEEecCCCEEEEEEccCCceEEEEEEe-----cCCceEEEEEEe--CCCC-EEEEEe
Confidence 345778999999999 689999998888 999999887 4444444 588899999998 8888 999999
Q ss_pred cCCeEEEEEcCCcc---ccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcE---EEEeeccCC-CCCcEE
Q 017553 106 INGIIRVIDVSNEK---LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC---ILIFAGAGG-HRNEVL 178 (369)
Q Consensus 106 ~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~-~~~~v~ 178 (369)
.||.|++||+.+++ ....+.+|...|.+++|+| ++++|++++.|+.|++||+++++. ...+. . |...|.
T Consensus 75 ~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~h~~~v~ 150 (377)
T 3dwl_C 75 QDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLK---RPLRSTIL 150 (377)
T ss_dssp TTSSEEEC------CCCCEEECCCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEEC---SSCCSCEE
T ss_pred CCCeEEEEEcCCCCceeeeeEecccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEee---cccCCCeE
Confidence 99999999999877 5667778999999999999 899999999999999999998873 55555 5 999999
Q ss_pred EEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEe
Q 017553 179 SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSK 256 (369)
Q Consensus 179 ~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~ 256 (369)
+++|+| ++.+|++++.|+.|++||++........... ...........+..+ .|...|.+++|+ +++|+++
T Consensus 151 ~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~ 223 (377)
T 3dwl_C 151 SLDWHP-NNVLLAAGCADRKAYVLSAYVRDVDAKPEAS-----VWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYA 223 (377)
T ss_dssp EEEECT-TSSEEEEEESSSCEEEEEECCSSCC-CCCSC-----SSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEE
T ss_pred EEEEcC-CCCEEEEEeCCCEEEEEEEEecccCCCcccc-----ccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEE
Confidence 999999 8899999999999999999753211110000 000000112334445 899999999997 7799999
Q ss_pred ecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCcee---------
Q 017553 257 SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVL--------- 327 (369)
Q Consensus 257 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--------- 327 (369)
+.|+.|++||+++.+. ....+..+..|...+.+++|+|+++ +|++++.++.+ +|+........
T Consensus 224 ~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 295 (377)
T 3dwl_C 224 GHDSSVTIAYPSAPEQ-----PPRALITVKLSQLPLRSLLWANESA--IVAAGYNYSPI-LLQGNESGWAHTRDLDAGTS 295 (377)
T ss_dssp ETTTEEC-CEECSTTS-----CEEECCCEECSSSCEEEEEEEETTE--EEEEESSSSEE-EECCCC---CCSBCCCSCCC
T ss_pred eCCCcEEEEECCCCCC-----cceeeEeecCCCCceEEEEEcCCCC--EEEEEcCCcEE-EEEeCCCceEEEeeeccccc
Confidence 9999999999998763 1112667778888999999999995 88888776655 66665221000
Q ss_pred ----------------E---------EEee--------------cCCCccceEEEEecCCC-C---EEEEeecCCeEEEE
Q 017553 328 ----------------I---------ARLS--------------HAQSKSPIRQTAMSYDG-S---TILSCCEDGAIWRW 364 (369)
Q Consensus 328 ----------------~---------~~~~--------------~~~~~~~v~~~~~s~~~-~---~l~s~~~dg~i~vw 364 (369)
. ..+. ...|...|+++++.+.. . .|+||+.||.|+||
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iW 375 (377)
T 3dwl_C 296 KTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLW 375 (377)
T ss_dssp CCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEE
T ss_pred ccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEe
Confidence 0 0000 11388999999977644 3 69999999999999
Q ss_pred ec
Q 017553 365 DA 366 (369)
Q Consensus 365 ~~ 366 (369)
|+
T Consensus 376 dl 377 (377)
T 3dwl_C 376 TL 377 (377)
T ss_dssp CC
T ss_pred cC
Confidence 96
No 41
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.1e-41 Score=283.65 Aligned_cols=243 Identities=19% Similarity=0.250 Sum_probs=215.6
Q ss_pred CcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccC
Q 017553 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 160 (369)
Q Consensus 81 ~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 160 (369)
.|...|++++|+ |+++ +|++|+.||.|++||+.+++.+..+..|...|.+++|+| ++.+|++|+.|+.|++||+.+
T Consensus 53 gH~~~v~~~~~s--~d~~-~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~v~iw~~~~ 128 (340)
T 1got_B 53 GHLAKIYAMHWG--TDSR-LLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP-SGNYVACGGLDNICSIYNLKT 128 (340)
T ss_dssp CCSSCEEEEEEC--TTSS-EEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECT-TSSEEEEEETTCEEEEEETTT
T ss_pred CCCCceEEEEEC--CCCC-EEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECC-CCCEEEEEeCCCeEEEEECcc
Confidence 588899999998 9998 999999999999999999999999999999999999999 899999999999999999987
Q ss_pred Cc----EEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeee
Q 017553 161 GI----CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA 236 (369)
Q Consensus 161 ~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (369)
++ ....+. +|.+.|.++.|++ ++. +++++.|++|++||++++ ..+..+
T Consensus 129 ~~~~~~~~~~~~---~h~~~v~~~~~~~-~~~-l~s~s~d~~i~~wd~~~~-----------------------~~~~~~ 180 (340)
T 1got_B 129 REGNVRVSRELA---GHTGYLSCCRFLD-DNQ-IVTSSGDTTCALWDIETG-----------------------QQTTTF 180 (340)
T ss_dssp CSBSCEEEEEEE---CCSSCEEEEEEEE-TTE-EEEEETTSCEEEEETTTT-----------------------EEEEEE
T ss_pred CCCcceeEEEec---CCCccEEEEEECC-CCc-EEEEECCCcEEEEECCCC-----------------------cEEEEE
Confidence 53 444555 7999999999997 654 889999999999999983 345677
Q ss_pred ccCCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCe
Q 017553 237 SVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGK 314 (369)
Q Consensus 237 ~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~ 314 (369)
..|...|.+++|+ ++++++++.|+.|++||++++. .+..+..|...|.+++|+|+++ +|++|+.||.
T Consensus 181 ~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~---------~~~~~~~h~~~v~~v~~~p~~~--~l~s~s~d~~ 249 (340)
T 1got_B 181 TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM---------CRQTFTGHESDINAICFFPNGN--AFATGSDDAT 249 (340)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS---------EEEEECCCSSCEEEEEECTTSS--EEEEEETTSC
T ss_pred cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCe---------eEEEEcCCcCCEEEEEEcCCCC--EEEEEcCCCc
Confidence 8899999999997 6799999999999999998876 6778888999999999999996 8999999999
Q ss_pred EEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 315 IFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 315 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
|++||+.+++ .+..+.+..+...|++++|+|+|++|++|+.||.|++||+.+
T Consensus 250 v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~ 301 (340)
T 1got_B 250 CRLFDLRADQ--ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 301 (340)
T ss_dssp EEEEETTTTE--EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred EEEEECCCCc--EEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEccc
Confidence 9999999873 445555445556899999999999999999999999999764
No 42
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=5.8e-41 Score=278.80 Aligned_cols=282 Identities=21% Similarity=0.325 Sum_probs=232.7
Q ss_pred eEEEEEeeccCCCccEEEEecCCcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEc
Q 017553 36 LYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDV 115 (369)
Q Consensus 36 v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~ 115 (369)
.++|+||+ +++||+|.++.|+|||+.+++.+..+..+ .|...|.+++|+ |+++ +|++|+.||+|++||+
T Consensus 28 ~~~l~WS~-----~~~lAvg~D~tV~iWd~~tg~~~~~~~~~---~~~~~V~~v~~~--~~~~-~l~sgs~Dg~v~iw~~ 96 (318)
T 4ggc_A 28 LNLVDWSS-----GNVLAVALDNSVYLWSASSGDILQLLQME---QPGEYISSVAWI--KEGN-YLAVGTSSAEVQLWDV 96 (318)
T ss_dssp CBCEEECT-----TSEEEEEETTEEEEEETTTCCEEEEEECC---STTCCEEEEEEC--TTSS-EEEEEETTSEEEEEET
T ss_pred ceEEEECC-----CCEEEEEeCCEEEEEECCCCCEEEEEEec---CCCCeEEEEEEC--CCCC-EEEEEECCCcEEEeec
Confidence 57899998 45888887666999999999988877643 577889999998 9998 9999999999999999
Q ss_pred CCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCc-EEEEeeccCCCCCcEEEEEecCCCceEEEEEe
Q 017553 116 SNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI-CILIFAGAGGHRNEVLSVDFHPSDIYRIASCG 194 (369)
Q Consensus 116 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 194 (369)
++++.+..+.+|...+.++.+. +..+++++.++.+++|+...+. .+..+. +|...+..+.+.+ ++.++++++
T Consensus 97 ~~~~~~~~~~~h~~~~~~~~~~---~~~l~s~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~l~s~~ 169 (318)
T 4ggc_A 97 QQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLS---GHSQEVCGLRWAP-DGRHLASGG 169 (318)
T ss_dssp TTTEEEEEEECCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEE---CCSSCEEEEEECT-TSSEEEEEE
T ss_pred CCceeEEEecCccceEEEeecC---CCEEEEEecCCceEeeecCCCceeEEEEc---CccCceEEEEEcC-CCCEEEEEe
Confidence 9999999999999998887765 4789999999999999998764 445555 7999999999999 889999999
Q ss_pred eCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee---CcE--EEEeecCCeEEEecCCC
Q 017553 195 MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDF--ILSKSVDNEIVLWEPKM 269 (369)
Q Consensus 195 ~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~--l~~~~~d~~i~i~d~~~ 269 (369)
.|+.|++||+++++.. .........+...|.++.+. +.. +++++.++.|++||.+.
T Consensus 170 ~d~~i~iwd~~~~~~~-------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~ 230 (318)
T 4ggc_A 170 NDNLVNVWPSAPGEGG-------------------WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS 230 (318)
T ss_dssp TTSCEEEEESSCBTTB-------------------SCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTT
T ss_pred cCcceeEEECCCCccc-------------------ccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccc
Confidence 9999999999874321 12234556677888888886 333 35677889999999987
Q ss_pred CCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCC
Q 017553 270 KEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDG 349 (369)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 349 (369)
.. ......+...+..+.|+|+++..++++|+.|+.|++||+.++ ..+..+. +|.+.|++++|+|+|
T Consensus 231 ~~----------~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~--~~~~~l~--gH~~~V~~l~~spdg 296 (318)
T 4ggc_A 231 GA----------CLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM--AKVAELK--GHTSRVLSLTMSPDG 296 (318)
T ss_dssp CC----------EEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC--CEEEEEC--CCSSCEEEEEECTTS
T ss_pred cc----------ccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCC--cEEEEEc--CCCCCEEEEEEcCCC
Confidence 64 222334556789999999998444455678999999999988 4566776 899999999999999
Q ss_pred CEEEEeecCCeEEEEecCC
Q 017553 350 STILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 350 ~~l~s~~~dg~i~vw~~~~ 368 (369)
++|+||+.||+|+|||+.+
T Consensus 297 ~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 297 ATVASAAADETLRLWRCFE 315 (318)
T ss_dssp SCEEEEETTTEEEEECCSC
T ss_pred CEEEEEecCCeEEEEECCC
Confidence 9999999999999999864
No 43
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=7.2e-42 Score=288.67 Aligned_cols=289 Identities=12% Similarity=0.056 Sum_probs=218.8
Q ss_pred CcCeEEEEEeeccCCCccEEEEecCC--------cEEEEEecCCce-----eEEEeeeccCCcccceeEEEeeecCCCcc
Q 017553 33 KRPLYAVVFNFIDSRYFNVFATVGGN--------RVTVYQCLEGGV-----IAALQSYVDEDKEESFYTVSWACNVDGIP 99 (369)
Q Consensus 33 ~~~v~~~~~s~~~~~~~~~la~~~~~--------~v~iw~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~g~~ 99 (369)
.-||++++|+| ++++||+||++ .|++|++..+.. ...........++..+.++++. +.
T Consensus 14 g~PV~sv~fs~----dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~----~~- 84 (365)
T 4h5i_A 14 GYPAYGAKFLN----NDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS----KG- 84 (365)
T ss_dssp SSCEEEEEEEE----TTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE----TT-
T ss_pred CCCEEEEEEeC----CCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC----CC-
Confidence 45899999999 68999998753 399999875542 2222222333566777777654 33
Q ss_pred EEEEe-----------ecCCeEEEEEcCCccccce---------eeccccceEEEEecCCCCceEEE--EeCCCcEEEEE
Q 017553 100 FLVAG-----------GINGIIRVIDVSNEKLHKS---------FVGHGDSINEIRTQPLKPSLVVS--ASKDESVRLWN 157 (369)
Q Consensus 100 ~l~~~-----------~~dg~i~vwd~~~~~~~~~---------~~~~~~~v~~~~~~~~~~~~l~s--~~~dg~i~vwd 157 (369)
.+++| +.|+.+++|++.+...... ...+...+.+++|+| +++++++ ++.|++|++||
T Consensus 85 ~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSp-Dg~~la~as~~~d~~i~iwd 163 (365)
T 4h5i_A 85 IILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISR-EGTVAAIASSKVPAIMRIID 163 (365)
T ss_dssp EEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECT-TSSCEEEEESCSSCEEEEEE
T ss_pred EEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcC-CCCEEEEEECCCCCEEEEeE
Confidence 45544 5678899999876532111 123445689999999 8888764 45789999999
Q ss_pred ccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeec
Q 017553 158 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS 237 (369)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (369)
+++++++..+. |...|.+++|+| +++++++++. +.+.+|+..++... ......
T Consensus 164 ~~~~~~~~~~~----~~~~V~~v~fsp-dg~~l~s~s~-~~~~~~~~~~~~~~---------------------~~~~~~ 216 (365)
T 4h5i_A 164 PSDLTEKFEIE----TRGEVKDLHFST-DGKVVAYITG-SSLEVISTVTGSCI---------------------ARKTDF 216 (365)
T ss_dssp TTTTEEEEEEE----CSSCCCEEEECT-TSSEEEEECS-SCEEEEETTTCCEE---------------------EEECCC
T ss_pred CCCCcEEEEeC----CCCceEEEEEcc-CCceEEeccc-eeEEEEEeccCcce---------------------eeeecC
Confidence 99999998886 888999999999 8999999885 45667776663211 122345
Q ss_pred cCCCceeeeeee--CcEEEEeecCC----eEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecC
Q 017553 238 VHSNYVDCNRWL--GDFILSKSVDN----EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR 311 (369)
Q Consensus 238 ~~~~~v~~~~~~--~~~l~~~~~d~----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~ 311 (369)
.|...|.+++|+ ++++++++.|+ .+++|++..... .......+..+...|++++|+|+++ +|++|+.
T Consensus 217 ~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~-----~~~~~~~~~~~~~~V~~~~~Spdg~--~lasgs~ 289 (365)
T 4h5i_A 217 DKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNT-----SVLRSKQVTNRFKGITSMDVDMKGE--LAVLASN 289 (365)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEE-----EEEEEEEEESSCSCEEEEEECTTSC--EEEEEET
T ss_pred CCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccccccee-----cceeeeeecCCCCCeEeEEECCCCC--ceEEEcC
Confidence 688889999997 77999998887 688898876542 1112455667888999999999997 9999999
Q ss_pred CCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 312 EGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 312 dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
|+.|+|||+.++ ..+..+. .+|..+|++++|+|||++||+||.|++|+||++.+
T Consensus 290 D~~V~iwd~~~~--~~~~~~~-~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 290 DNSIALVKLKDL--SMSKIFK-QAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp TSCEEEEETTTT--EEEEEET-TSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred CCEEEEEECCCC--cEEEEec-CcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 999999999988 4444431 27899999999999999999999999999999864
No 44
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-42 Score=297.54 Aligned_cols=304 Identities=12% Similarity=0.088 Sum_probs=230.8
Q ss_pred ceeeeeec-ccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecC---CceeEEEeeeccCCcccceeEEEeeecCC
Q 017553 22 EYRVTNKL-QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLE---GGVIAALQSYVDEDKEESFYTVSWACNVD 96 (369)
Q Consensus 22 ~~~~~~~~-~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 96 (369)
..++...+ ++|.+.|++++|+|. ++++||+++.|+ |+|||+.+ +........+ .|...|.+++|+ |+
T Consensus 51 ~g~~~~~~~~~h~~~V~~~~~s~~---~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~---~h~~~v~~~~~~--~~ 122 (437)
T 3gre_A 51 RGKLIATLMENEPNSITSSAVSPG---ETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY---DCSSTVTQITMI--PN 122 (437)
T ss_dssp CCCEEEEECTTTTSCEEEEEEECS---SSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE---ECSSCEEEEEEC--TT
T ss_pred cceEEeeeccCCCCceEEEEECCC---CCCEEEEecCCceEEEeECcccccCcccceeeec---cCCCCEEEEEEe--CC
Confidence 34566677 899999999999993 378999999999 99999876 4322111111 378899999998 88
Q ss_pred CccEEEEeecCCeEEEEEcC---Cccccceeec------------cccceEEEE--ecCCCCceEEEEeCCCcEEEEEcc
Q 017553 97 GIPFLVAGGINGIIRVIDVS---NEKLHKSFVG------------HGDSINEIR--TQPLKPSLVVSASKDESVRLWNVQ 159 (369)
Q Consensus 97 g~~~l~~~~~dg~i~vwd~~---~~~~~~~~~~------------~~~~v~~~~--~~~~~~~~l~s~~~dg~i~vwd~~ 159 (369)
+. +|++|+.||.|++||+. +++....+.. +...+.++. +++ ++.+|++++.|+.|++||++
T Consensus 123 ~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~ 200 (437)
T 3gre_A 123 FD-AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE-EKSLLVALTNLSRVIIFDIR 200 (437)
T ss_dssp SS-EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS-SCEEEEEEETTSEEEEEETT
T ss_pred CC-EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcC-CCCEEEEEeCCCeEEEEeCC
Confidence 88 99999999999999995 5554444433 334455555 446 78899999999999999999
Q ss_pred CCcEEEEeeccCC--CCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeec
Q 017553 160 TGICILIFAGAGG--HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS 237 (369)
Q Consensus 160 ~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (369)
+++.+..+. + |...|++++|+| ++.+|++|+.||.|++||++.+ .++..+.
T Consensus 201 ~~~~~~~~~---~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~-----------------------~~~~~~~ 253 (437)
T 3gre_A 201 TLERLQIIE---NSPRHGAVSSICIDE-ECCVLILGTTRGIIDIWDIRFN-----------------------VLIRSWS 253 (437)
T ss_dssp TCCEEEEEE---CCGGGCCEEEEEECT-TSCEEEEEETTSCEEEEETTTT-----------------------EEEEEEB
T ss_pred CCeeeEEEc---cCCCCCceEEEEECC-CCCEEEEEcCCCeEEEEEcCCc-----------------------cEEEEEe
Confidence 999999888 5 889999999999 8999999999999999999983 2344443
Q ss_pred -cCCCceeeeeee------CcEEEEeecCCeEEEecCCCCCCCCCCC-c--------ccee------eeccC--CCCCee
Q 017553 238 -VHSNYVDCNRWL------GDFILSKSVDNEIVLWEPKMKEQSPGEG-T--------ADIL------QKYPV--PECDIW 293 (369)
Q Consensus 238 -~~~~~v~~~~~~------~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~--------~~~~------~~~~~--~~~~i~ 293 (369)
.|...|.++.|+ +.++++++.|+.|++||+++++...... . ..+. ..+.. |...|.
T Consensus 254 ~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~ 333 (437)
T 3gre_A 254 FGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALS 333 (437)
T ss_dssp CTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGC
T ss_pred cCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceE
Confidence 677789999554 4489999999999999998775210000 0 0000 01122 567799
Q ss_pred EEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEee---------------------------------cCCCccce
Q 017553 294 FIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLS---------------------------------HAQSKSPI 340 (369)
Q Consensus 294 ~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------------------------------~~~~~~~v 340 (369)
+++|+ ++ .+|++|+.||.|++||+.+++......-. ...|...|
T Consensus 334 ~l~~~-~~--~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I 410 (437)
T 3gre_A 334 TISVS-ND--KILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDII 410 (437)
T ss_dssp CEEEE-TT--EEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCE
T ss_pred EEEEC-Cc--eEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccce
Confidence 99999 55 38999999999999999887533222100 01278999
Q ss_pred EEEEecCC--CCEEEEeecCCeEEEEe
Q 017553 341 RQTAMSYD--GSTILSCCEDGAIWRWD 365 (369)
Q Consensus 341 ~~~~~s~~--~~~l~s~~~dg~i~vw~ 365 (369)
++++|+++ +.+|++|+.||.|+||+
T Consensus 411 ~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 411 NSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred eeEeeeccCCceEEEEEcCCceEEEeC
Confidence 99999998 78999999999999996
No 45
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2e-41 Score=278.30 Aligned_cols=254 Identities=17% Similarity=0.207 Sum_probs=210.1
Q ss_pred CcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCC--ccccceeeccccceEEEEecCC-CCceEEEEeCCCcEEEEE
Q 017553 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN--EKLHKSFVGHGDSINEIRTQPL-KPSLVVSASKDESVRLWN 157 (369)
Q Consensus 81 ~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~dg~i~vwd 157 (369)
.|...|.+++|+ |+|+ +|++|+.|++|++||+.. .+.+.++.+|.++|.+++|+|. ++++|++|+.|++|++||
T Consensus 7 ~h~~~V~~~~~s--~~g~-~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd 83 (297)
T 2pm7_B 7 AHNEMIHDAVMD--YYGK-RMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK 83 (297)
T ss_dssp SCSSCEEEEEEC--TTSS-EEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEE
T ss_pred CCcCceEEEEEC--CCCC-EEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEE
Confidence 688899999998 9999 999999999999999974 4678899999999999999862 378999999999999999
Q ss_pred ccCCc--EEEEeeccCCCCCcEEEEEecCCC--ceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecce
Q 017553 158 VQTGI--CILIFAGAGGHRNEVLSVDFHPSD--IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV 233 (369)
Q Consensus 158 ~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (369)
+++++ .+..+. +|...|.+++|+| + +.+|++++.|+.|++||++.... ...
T Consensus 84 ~~~~~~~~~~~~~---~h~~~v~~v~~~p-~~~g~~l~s~s~d~~v~~wd~~~~~~---------------------~~~ 138 (297)
T 2pm7_B 84 EENGRWSQIAVHA---VHSASVNSVQWAP-HEYGPMLLVASSDGKVSVVEFKENGT---------------------TSP 138 (297)
T ss_dssp BSSSCBCCCEEEC---CCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEEBCSSSC---------------------BCC
T ss_pred cCCCceEEEEEee---cCCCceeEEEeCc-CCCCcEEEEEECCCcEEEEEecCCCc---------------------eee
Confidence 98874 444555 6999999999999 5 78999999999999999987310 112
Q ss_pred eeeccCCCceeeeeeeC---------------cEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEe
Q 017553 234 FIASVHSNYVDCNRWLG---------------DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFS 298 (369)
Q Consensus 234 ~~~~~~~~~v~~~~~~~---------------~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 298 (369)
..+..|...|.+++|++ ++|++++.|+.|++||+++.+. .......+..|...|.+++|+
T Consensus 139 ~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~-----~~~~~~~l~~H~~~V~~v~~s 213 (297)
T 2pm7_B 139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ-----TYVLESTLEGHSDWVRDVAWS 213 (297)
T ss_dssp EEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTT-----EEEEEEEECCCSSCEEEEEEC
T ss_pred eeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCc-----eEEEEEEecCCCCceEEEEEC
Confidence 45668899999999973 4899999999999999986542 122456778899999999999
Q ss_pred ecCC-ccEEEEecCCCeEEEEEccCCCcee-EEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecC
Q 017553 299 CDFH-YNAAAIGNREGKIFVWELQSSPPVL-IARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 299 ~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 367 (369)
|++. ..+|++++.|+.|++||+.+..... ...+....|...|.+++|+|+|++||+++.||.|+||+..
T Consensus 214 p~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 214 PTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp CCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred CCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 9851 2489999999999999998753222 2233223677899999999999999999999999999976
No 46
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.7e-42 Score=298.06 Aligned_cols=302 Identities=15% Similarity=0.146 Sum_probs=231.7
Q ss_pred cCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEE
Q 017553 34 RPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRV 112 (369)
Q Consensus 34 ~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~v 112 (369)
..+++++|+| ++++|++++.|+ |++||+.+++....+. .+ ..+....|+ ++++ +|++|+.||.|++
T Consensus 57 ~~~~~~~~s~----~g~~l~~~~~d~~v~i~d~~~~~~~~~~~-----~~-~~~~~~~~~--~~~~-~l~~~~~dg~i~i 123 (420)
T 3vl1_A 57 DAGKGNTFEK----VGSHLYKARLDGHDFLFNTIIRDGSKMLK-----RA-DYTAVDTAK--LQMR-RFILGTTEGDIKV 123 (420)
T ss_dssp BCCTTCEEEE----EETTEEEEEETTEEEEEECCSEETTTTSC-----SC-CEEEEEEEC--SSSC-EEEEEETTSCEEE
T ss_pred ccccceeeee----cCCeEEEEEcCCcEEEEEecccceeeEEe-----cC-CceEEEEEe--cCCC-EEEEEECCCCEEE
Confidence 3456899999 689999999888 9999987766544333 12 223333444 8888 9999999999999
Q ss_pred EEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEE
Q 017553 113 IDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIAS 192 (369)
Q Consensus 113 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 192 (369)
||+.+++....+.+|...|.+++|+| ++.+|++++.|+.|++||+++++.+..+. +|...|.+++|+| ++.+|++
T Consensus 124 wd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~---~h~~~v~~~~~~~-~~~~l~s 198 (420)
T 3vl1_A 124 LDSNFNLQREIDQAHVSEITKLKFFP-SGEALISSSQDMQLKIWSVKDGSNPRTLI---GHRATVTDIAIID-RGRNVLS 198 (420)
T ss_dssp ECTTSCEEEEETTSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCCCEEEE---CCSSCEEEEEEET-TTTEEEE
T ss_pred EeCCCcceeeecccccCccEEEEECC-CCCEEEEEeCCCeEEEEeCCCCcCceEEc---CCCCcEEEEEEcC-CCCEEEE
Confidence 99999988888889999999999999 88999999999999999999999988888 7999999999999 8899999
Q ss_pred EeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceee----cceeeeccCCCceeeeeee--CcEEEEeecCCeEEEec
Q 017553 193 CGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQ----FPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWE 266 (369)
Q Consensus 193 ~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d 266 (369)
++.|+.|++||+++++............. ...... ........+...+.+++|+ ++++++++.||.|++||
T Consensus 199 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d 275 (420)
T 3vl1_A 199 ASLDGTIRLWECGTGTTIHTFNRKENPHD---GVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHN 275 (420)
T ss_dssp EETTSCEEEEETTTTEEEEEECBTTBTTC---CEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEE
T ss_pred EcCCCcEEEeECCCCceeEEeecCCCCCC---CccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEE
Confidence 99999999999998653332211000000 000000 0000112345677777776 77999999999999999
Q ss_pred CCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEec
Q 017553 267 PKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMS 346 (369)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s 346 (369)
+++.+. .......+...+.+++|+|+++ .+|++|+.||.|++||+.+++. .+..+.. .|...|.++.+
T Consensus 276 ~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~-~~l~~g~~dg~i~vwd~~~~~~-~~~~~~~-~~~~~v~~~~~- 343 (420)
T 3vl1_A 276 VFSKEQ--------TIQLPSKFTCSCNSLTVDGNNA-NYIYAGYENGMLAQWDLRSPEC-PVGEFLI-NEGTPINNVYF- 343 (420)
T ss_dssp TTTCCE--------EEEECCTTSSCEEEEEECSSCT-TEEEEEETTSEEEEEETTCTTS-CSEEEEE-STTSCEEEEEE-
T ss_pred CCCCce--------eEEcccccCCCceeEEEeCCCC-CEEEEEeCCCeEEEEEcCCCcC-chhhhhc-cCCCCceEEEe-
Confidence 988762 2233345678899999999985 3899999999999999998753 2233331 35578888855
Q ss_pred CCCCEEEEeecCCeEEEEecCC
Q 017553 347 YDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 347 ~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
+++++|++++.||.|++|++..
T Consensus 344 ~~~~~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 344 AAGALFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp ETTEEEEEETTTEEEEEEEECC
T ss_pred CCCCEEEEecCCccEEEEeccC
Confidence 5788999999999999999864
No 47
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=8.7e-41 Score=288.57 Aligned_cols=297 Identities=12% Similarity=0.099 Sum_probs=237.2
Q ss_pred ceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccE
Q 017553 22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF 100 (369)
Q Consensus 22 ~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~ 100 (369)
..+....+..| ..+....|+| ++++||+++.++ |++||+.++.....+. .|...|.+++|+ |+++ +
T Consensus 87 ~~~~~~~~~~~-~~~~~~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~h~~~v~~~~~~--~~~~-~ 153 (420)
T 3vl1_A 87 IRDGSKMLKRA-DYTAVDTAKL----QMRRFILGTTEGDIKVLDSNFNLQREIDQ-----AHVSEITKLKFF--PSGE-A 153 (420)
T ss_dssp SEETTTTSCSC-CEEEEEEECS----SSCEEEEEETTSCEEEECTTSCEEEEETT-----SSSSCEEEEEEC--TTSS-E
T ss_pred ccceeeEEecC-CceEEEEEec----CCCEEEEEECCCCEEEEeCCCcceeeecc-----cccCccEEEEEC--CCCC-E
Confidence 33334444555 3444556777 689999999998 9999988877665544 588899999998 8998 9
Q ss_pred EEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEE
Q 017553 101 LVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSV 180 (369)
Q Consensus 101 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~ 180 (369)
|++|+.||.|++||+.+++.+..+.+|...|.+++|+| ++.+|++++.|+.|++||+++++.+..+.....|...+.++
T Consensus 154 l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~ 232 (420)
T 3vl1_A 154 LISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID-RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSI 232 (420)
T ss_dssp EEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEE
T ss_pred EEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcC-CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEE
Confidence 99999999999999999999999999999999999999 89999999999999999999999998887544455556555
Q ss_pred Ee---------------------cCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccC
Q 017553 181 DF---------------------HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH 239 (369)
Q Consensus 181 ~~---------------------~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (369)
+| +| ++.+|++++.||.|++||++++.. .......|
T Consensus 233 ~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~----------------------~~~~~~~~ 289 (420)
T 3vl1_A 233 ALFVGTDRQLHEISTSKKNNLEFGT-YGKYVIAGHVSGVITVHNVFSKEQ----------------------TIQLPSKF 289 (420)
T ss_dssp EEEECCCSSCGGGCCCCCCTTCSSC-TTEEEEEEETTSCEEEEETTTCCE----------------------EEEECCTT
T ss_pred EEecCCcceeeecccCcccceEEcC-CCCEEEEEcCCCeEEEEECCCCce----------------------eEEccccc
Confidence 54 67 788999999999999999988421 12233468
Q ss_pred CCceeeeeee--Cc-EEEEeecCCeEEEecCCCCCCCCCCCccceeeeccC-CCCCeeEEEEeecCCccEEEEecCCCeE
Q 017553 240 SNYVDCNRWL--GD-FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV-PECDIWFIKFSCDFHYNAAAIGNREGKI 315 (369)
Q Consensus 240 ~~~v~~~~~~--~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~~~l~~~~~dg~i 315 (369)
...|.+++|+ +. ++++++.||.|++||+++.+. ++..+.. +...+.++.+ ++++ +|++++.||.|
T Consensus 290 ~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~--------~~~~~~~~~~~~v~~~~~-~~~~--~l~s~~~d~~v 358 (420)
T 3vl1_A 290 TCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC--------PVGEFLINEGTPINNVYF-AAGA--LFVSSGFDTSI 358 (420)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS--------CSEEEEESTTSCEEEEEE-ETTE--EEEEETTTEEE
T ss_pred CCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC--------chhhhhccCCCCceEEEe-CCCC--EEEEecCCccE
Confidence 8899999998 44 999999999999999998753 3445554 4567777754 5554 89999999999
Q ss_pred EEEEccCCCce-e------EEEeecCCCccceEEEEecCCCC---EEEEeecCCeEEEEecCC
Q 017553 316 FVWELQSSPPV-L------IARLSHAQSKSPIRQTAMSYDGS---TILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 316 ~i~d~~~~~~~-~------~~~~~~~~~~~~v~~~~~s~~~~---~l~s~~~dg~i~vw~~~~ 368 (369)
++||+...... . ...+. .+...|.+++|+|+++ .|++++.+|.+.+|++++
T Consensus 359 ~iw~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 359 KLDIISDPESERPAIEFETPTFLV--SNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp EEEEECCTTCCSCEECTTSCEEEC--CSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred EEEeccCCCCCccceeccCccEEc--cCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 99999874211 1 11122 6778999999999999 777788899999999875
No 48
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4.8e-41 Score=313.63 Aligned_cols=292 Identities=19% Similarity=0.263 Sum_probs=251.6
Q ss_pred eeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEE
Q 017553 23 YRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL 101 (369)
Q Consensus 23 ~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l 101 (369)
+++.+.+.+|.+.|++++|+| ++.+||+++.++ |+|||+.+++.+..+. .|...|.+++|+ |+++ +|
T Consensus 3 l~~~~~~~~h~~~v~~i~~sp----~~~~la~~~~~g~v~iwd~~~~~~~~~~~-----~~~~~v~~~~~s--~~~~-~l 70 (814)
T 3mkq_A 3 LDIKKTFSNRSDRVKGIDFHP----TEPWVLTTLYSGRVEIWNYETQVEVRSIQ-----VTETPVRAGKFI--ARKN-WI 70 (814)
T ss_dssp CCCEEEEEEECSCEEEEEECS----SSSEEEEEETTSEEEEEETTTTEEEEEEE-----CCSSCEEEEEEE--GGGT-EE
T ss_pred cccceeeecCCCceEEEEECC----CCCEEEEEeCCCEEEEEECCCCceEEEEe-----cCCCcEEEEEEe--CCCC-EE
Confidence 456778899999999999999 689999999888 9999999998888777 578899999999 8898 99
Q ss_pred EEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCC-cEEEEeeccCCCCCcEEEE
Q 017553 102 VAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG-ICILIFAGAGGHRNEVLSV 180 (369)
Q Consensus 102 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~v~~~ 180 (369)
++|+.||.|++||+.+++.+..+.+|.+.|.+++|+| ++..|++++.||.|++||++++ .....+. +|...|.++
T Consensus 71 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~---~~~~~v~~~ 146 (814)
T 3mkq_A 71 IVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFE---GHEHFVMCV 146 (814)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS-SSSEEEEEETTSEEEEEEGGGTSEEEEEEE---CCSSCEEEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeC-CCCEEEEEcCCCEEEEEECCCCceEEEEEc---CCCCcEEEE
Confidence 9999999999999999999999999999999999999 8899999999999999999987 5566666 799999999
Q ss_pred EecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeec-cCCCceeeeeee----CcEEEE
Q 017553 181 DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS-VHSNYVDCNRWL----GDFILS 255 (369)
Q Consensus 181 ~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~----~~~l~~ 255 (369)
+|+|.++..+++++.||.|++||++.+. +..... .+...+.+++|+ +.++++
T Consensus 147 ~~~p~~~~~l~~~~~dg~v~vwd~~~~~-----------------------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 203 (814)
T 3mkq_A 147 AFNPKDPSTFASGCLDRTVKVWSLGQST-----------------------PNFTLTTGQERGVNYVDYYPLPDKPYMIT 203 (814)
T ss_dssp EEETTEEEEEEEEETTSEEEEEETTCSS-----------------------CSEEEECCCTTCCCEEEECCSTTCCEEEE
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCc-----------------------ceeEEecCCCCCEEEEEEEECCCCCEEEE
Confidence 9999677899999999999999998732 222333 344788888884 679999
Q ss_pred eecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCC
Q 017553 256 KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQ 335 (369)
Q Consensus 256 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 335 (369)
++.|+.|++||+++++ .+..+..|...+.+++|+|+++ ++++++.||.|++||+.+++ ....+. .
T Consensus 204 ~~~dg~i~~~d~~~~~---------~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~v~vwd~~~~~--~~~~~~--~ 268 (814)
T 3mkq_A 204 ASDDLTIKIWDYQTKS---------CVATLEGHMSNVSFAVFHPTLP--IIISGSEDGTLKIWNSSTYK--VEKTLN--V 268 (814)
T ss_dssp ECTTSEEEEEETTTTE---------EEEEEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTCS--EEEEEC--C
T ss_pred EeCCCEEEEEECCCCc---------EEEEEcCCCCCEEEEEEcCCCC--EEEEEeCCCeEEEEECCCCc--EEEEee--c
Confidence 9999999999998765 6777788889999999999996 99999999999999999884 455555 6
Q ss_pred CccceEEEEecCCCCE-EEEeecCCeEEEEecCC
Q 017553 336 SKSPIRQTAMSYDGST-ILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 336 ~~~~v~~~~~s~~~~~-l~s~~~dg~i~vw~~~~ 368 (369)
+...+.+++|+|++.. +++++.++.+.+|++..
T Consensus 269 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (814)
T 3mkq_A 269 GLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN 302 (814)
T ss_dssp SSSSEEEEEECTTCGGGEEEEEETTEEEEEECSC
T ss_pred CCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCC
Confidence 6789999999999873 24444567788998753
No 49
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=5e-41 Score=291.03 Aligned_cols=277 Identities=22% Similarity=0.362 Sum_probs=236.7
Q ss_pred ccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCC
Q 017553 30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING 108 (369)
Q Consensus 30 ~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg 108 (369)
.+|...|++++|. ++++++|+.|+ |++||+.+++....+. .|...|.+++| ++. +|++|+.||
T Consensus 130 ~~~~~~v~~~~~d------~~~l~~g~~dg~i~iwd~~~~~~~~~~~-----~h~~~v~~l~~----~~~-~l~sg~~dg 193 (435)
T 1p22_A 130 SETSKGVYCLQYD------DQKIVSGLRDNTIKIWDKNTLECKRILT-----GHTGSVLCLQY----DER-VIITGSSDS 193 (435)
T ss_dssp CSSCCCEEEEECC------SSEEEEEESSSCEEEEESSSCCEEEEEC-----CCSSCEEEEEC----CSS-EEEEEETTS
T ss_pred cCCCCcEEEEEEC------CCEEEEEeCCCeEEEEeCCCCeEEEEEc-----CCCCcEEEEEE----CCC-EEEEEcCCC
Confidence 4677789999873 68999999998 9999999998887776 57888988887 466 999999999
Q ss_pred eEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCce
Q 017553 109 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY 188 (369)
Q Consensus 109 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 188 (369)
.|++||+.+++.+..+.+|...|.+++|++ ..+++|+.||.|++||+++++.........+|...|.+++|. ++
T Consensus 194 ~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~---~~ 267 (435)
T 1p22_A 194 TVRVWDVNTGEMLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DK 267 (435)
T ss_dssp CEEEEESSSCCEEEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE---TT
T ss_pred eEEEEECCCCcEEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC---CC
Confidence 999999999999999999999999999975 589999999999999999887653322233799999999994 56
Q ss_pred EEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeeeCcEEEEeecCCeEEEecCC
Q 017553 189 RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPK 268 (369)
Q Consensus 189 ~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~ 268 (369)
++++++.||.|++||+++ ...+..+..|...|.++.++++++++++.|+.|++||++
T Consensus 268 ~l~s~~~dg~i~vwd~~~-----------------------~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~ 324 (435)
T 1p22_A 268 YIVSASGDRTIKVWNTST-----------------------CEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIE 324 (435)
T ss_dssp EEEEEETTSEEEEEETTT-----------------------CCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred EEEEEeCCCeEEEEECCc-----------------------CcEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECC
Confidence 899999999999999998 345667778999999999999999999999999999999
Q ss_pred CCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCc-------eeEEEeecCCCccceE
Q 017553 269 MKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP-------VLIARLSHAQSKSPIR 341 (369)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~-------~~~~~~~~~~~~~~v~ 341 (369)
+++ .+..+..|...+.+++| ++. +|++|+.||.|++||+.++.. .....+. +|.+.|.
T Consensus 325 ~~~---------~~~~~~~h~~~v~~~~~--~~~--~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~h~~~v~ 389 (435)
T 1p22_A 325 CGA---------CLRVLEGHEELVRCIRF--DNK--RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV--EHSGRVF 389 (435)
T ss_dssp TCC---------EEEEECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEEC--CCSSCCC
T ss_pred CCC---------EEEEEeCCcCcEEEEEe--cCC--EEEEEeCCCcEEEEECCCCCCccccccchheeecc--CCCCCeE
Confidence 876 67888889999999998 453 899999999999999976531 1455555 8889999
Q ss_pred EEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 342 QTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 342 ~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
+++| ++.+|++++.||.|++||+.+
T Consensus 390 ~l~~--~~~~l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 390 RLQF--DEFQIVSSSHDDTILIWDFLN 414 (435)
T ss_dssp CEEE--CSSCEEECCSSSEEEEEC---
T ss_pred EEEe--CCCEEEEEeCCCEEEEEECCC
Confidence 9999 788999999999999999864
No 50
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-41 Score=279.79 Aligned_cols=279 Identities=20% Similarity=0.324 Sum_probs=209.8
Q ss_pred cccccccccccccccccccceeeeeec-cc-CCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCC-------ceeE
Q 017553 3 RTAIGCEPLVGSLTPSKKREYRVTNKL-QE-GKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEG-------GVIA 72 (369)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~-------~~~~ 72 (369)
.+|+++.+....+.......++....+ .+ |...|++++|+| ++++||+++.|+ |+||++... +.+.
T Consensus 26 ~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp----~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~ 101 (330)
T 2hes_X 26 ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRP----HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLA 101 (330)
T ss_dssp EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECT----TSSEEEEEETTSCEEEEEC-------CCCEEEE
T ss_pred EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECC----CCCEEEEEeCCCcEEEEEcccCcCccccceeEE
Confidence 356666666666655444445555555 44 999999999999 689999999998 999998532 2233
Q ss_pred EEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCc----cccceeeccccceEEEEecCCCCceEEEEe
Q 017553 73 ALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE----KLHKSFVGHGDSINEIRTQPLKPSLVVSAS 148 (369)
Q Consensus 73 ~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 148 (369)
.+. .|...|.+++|+ |+|+ +|++|+.|++|++||+... +++..+.+|...|.+++|+| ++.+|++|+
T Consensus 102 ~~~-----~h~~~V~~v~~s--p~g~-~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s 172 (330)
T 2hes_X 102 IIE-----GHENEVKGVAWS--NDGY-YLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSS 172 (330)
T ss_dssp EEC---------CEEEEEEC--TTSC-EEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS-SSSEEEEEE
T ss_pred EEc-----CCCCcEEEEEEC--CCCC-EEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC-CCCEEEEEc
Confidence 333 588899999998 8998 9999999999999999432 45677889999999999999 889999999
Q ss_pred CCCcEEEEEccCC--cEEEEeeccCCCCCcEEEEEecCCC--ceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCC
Q 017553 149 KDESVRLWNVQTG--ICILIFAGAGGHRNEVLSVDFHPSD--IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKF 224 (369)
Q Consensus 149 ~dg~i~vwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~ 224 (369)
.|++|++||..++ +++..+. +|...|.+++|+| + +..|++++.|++|++||++......
T Consensus 173 ~D~~i~iW~~~~~~~~~~~~~~---~h~~~v~~~~~~~-~~~~~~l~s~s~D~~v~iw~~~~~~~~~------------- 235 (330)
T 2hes_X 173 YDDTVRIWKDYDDDWECVAVLN---GHEGTVWSSDFDK-TEGVFRLCSGSDDSTVRVWKYMGDDEDD------------- 235 (330)
T ss_dssp TTSCEEEEEEETTEEEEEEEEC---CCSSCEEEEEECC-SSSSCEEEEEETTSCEEEEEEEEECTTS-------------
T ss_pred CCCeEEEEECCCCCeeEEEEcc---CCCCcEEEEEecC-CCCeeEEEEEeCCCeEEEEEecCCCccc-------------
Confidence 9999999999876 5666666 8999999999999 5 6789999999999999997632100
Q ss_pred CCceeecceeeecc-CCCceeeeeee-CcEEEEeecCCeEEEecCCCCCCCCCCCcccee-eeccCCCC-CeeEEEEee-
Q 017553 225 PTKYVQFPVFIASV-HSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADIL-QKYPVPEC-DIWFIKFSC- 299 (369)
Q Consensus 225 ~~~~~~~~~~~~~~-~~~~v~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~-~i~~~~~s~- 299 (369)
.........+.. |...|.+++|+ +.++++++.|+.|++||..+++. ..+ .....|.. .+.+++|+|
T Consensus 236 --~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~-------~~~~~~~~~h~~~~v~~v~~~~~ 306 (330)
T 2hes_X 236 --QQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEW-------KVFAKRALCHGVYEINVVKWLEL 306 (330)
T ss_dssp --CEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEE-------EEEEEESCTTTTSCEEEEEEC--
T ss_pred --cceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCce-------EEEeccccccccceEEEEEEecC
Confidence 000112233333 88999999998 66899999999999999876521 122 22345665 899999999
Q ss_pred -cCCccEEEEecCCCeEEEEEccC
Q 017553 300 -DFHYNAAAIGNREGKIFVWELQS 322 (369)
Q Consensus 300 -~~~~~~l~~~~~dg~i~i~d~~~ 322 (369)
+++ +|++|+.||.|++||++.
T Consensus 307 ~~~~--~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 307 NGKT--ILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp ---C--CEEEEETTSEEEEEEC--
T ss_pred CCce--EEEEecCCCcEEEEEecc
Confidence 454 899999999999999865
No 51
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-42 Score=300.30 Aligned_cols=295 Identities=9% Similarity=-0.014 Sum_probs=220.1
Q ss_pred CCcCeEEEEEeeccCCC-----ccEEEE-------------------ecCCc-EEEEEecCCceeEEEeeeccCCcccce
Q 017553 32 GKRPLYAVVFNFIDSRY-----FNVFAT-------------------VGGNR-VTVYQCLEGGVIAALQSYVDEDKEESF 86 (369)
Q Consensus 32 h~~~v~~~~~s~~~~~~-----~~~la~-------------------~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v 86 (369)
+.+.|++|+|+|..... +++||+ ++.|+ |+||++.+++....... ....|.+.|
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~-~l~~~~~~V 210 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQ-TIVHSFGEV 210 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEE-EEEECCCSE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEE-EEEecCCcE
Confidence 57899999999953111 156666 44667 99999987764321110 011356789
Q ss_pred eEEEeeec----CCCccEEEEeecCCeEEEEEcCCccc-----------cceeeccccceEEEEecCCCCceEEEEeCCC
Q 017553 87 YTVSWACN----VDGIPFLVAGGINGIIRVIDVSNEKL-----------HKSFVGHGDSINEIRTQPLKPSLVVSASKDE 151 (369)
Q Consensus 87 ~~~~~~~~----~~g~~~l~~~~~dg~i~vwd~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg 151 (369)
..++|++. +++. +|++++.||+|++||+.+++. ...+.+|...|++++|+| + ..|++|+.||
T Consensus 211 ~~v~wsp~~~~~~~~~-~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~-~-~~lasgs~Dg 287 (524)
T 2j04_B 211 WDLKWHEGCHAPHLVG-CLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS-P-TTVVCGFKNG 287 (524)
T ss_dssp EEEEECSSCCCSSSSC-EEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS-S-SEEEEEETTS
T ss_pred EEEEECCCCCCCCCCc-eEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC-C-CeEEEEeCCC
Confidence 99999943 2356 999999999999999976642 236778999999999998 4 4899999999
Q ss_pred cEEEEEccCCc-EEEEeeccCCCCCcEEEE--EecCCCc-eEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCc
Q 017553 152 SVRLWNVQTGI-CILIFAGAGGHRNEVLSV--DFHPSDI-YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTK 227 (369)
Q Consensus 152 ~i~vwd~~~~~-~~~~~~~~~~~~~~v~~~--~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 227 (369)
+|++||++++. +...+. +|...|.++ .|+| ++ .+|++++.|++|++||+++++
T Consensus 288 tV~lWD~~~~~~~~~~~~---~H~~~V~sv~~~~s~-~g~~~laS~S~D~tvklWD~~~~~------------------- 344 (524)
T 2j04_B 288 FVAEFDLTDPEVPSFYDQ---VHDSYILSVSTAYSD-FEDTVVSTVAVDGYFYIFNPKDIA------------------- 344 (524)
T ss_dssp EEEEEETTBCSSCSEEEE---CSSSCEEEEEEECCT-TSCCEEEEEETTSEEEEECGGGHH-------------------
T ss_pred EEEEEECCCCCCceEEee---cccccEEEEEEEcCC-CCCeEEEEeccCCeEEEEECCCCC-------------------
Confidence 99999999764 344455 799999999 5677 66 899999999999999999832
Q ss_pred eeecceeeeccCCC--ceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCc
Q 017553 228 YVQFPVFIASVHSN--YVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHY 303 (369)
Q Consensus 228 ~~~~~~~~~~~~~~--~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 303 (369)
....+..|.. .|.+++|+ ++.+++++.|+.|++||+++.. .+..+..|...|++++|+|+++
T Consensus 345 ----~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~---------~~~~l~gH~~~V~sva~Sp~g~- 410 (524)
T 2j04_B 345 ----TTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAF---------AVHPLVSRETTITAIGVSRLHP- 410 (524)
T ss_dssp ----HHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTT---------CCEEEEECSSCEEEEECCSSCC-
T ss_pred ----cccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccc---------cceeeecCCCceEEEEeCCCCC-
Confidence 2333344442 47889998 6689999999999999998865 4556667899999999999997
Q ss_pred cEEEEecCCCeEEEEEccCCCce------------eEEEe----------------------------ecCCCccceEEE
Q 017553 304 NAAAIGNREGKIFVWELQSSPPV------------LIARL----------------------------SHAQSKSPIRQT 343 (369)
Q Consensus 304 ~~l~~~~~dg~i~i~d~~~~~~~------------~~~~~----------------------------~~~~~~~~v~~~ 343 (369)
+|++|+.||+|++||+...... .+..+ ...+|...|.++
T Consensus 411 -~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~V 489 (524)
T 2j04_B 411 -MVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCT 489 (524)
T ss_dssp -BCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCE
T ss_pred -eEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEE
Confidence 8999999999999986432100 01000 122577899999
Q ss_pred EecCCCC---EEEEeecCCeEEEEecCC
Q 017553 344 AMSYDGS---TILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 344 ~~s~~~~---~l~s~~~dg~i~vw~~~~ 368 (369)
+|+|+++ +||+|+.||.|+||++.-
T Consensus 490 afsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 490 KWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp EECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred ECCCCCCccHHHHhhccCceEEEEEccc
Confidence 9999964 999999999999999864
No 52
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.9e-40 Score=278.25 Aligned_cols=295 Identities=17% Similarity=0.204 Sum_probs=222.3
Q ss_pred ccccccccccccccccccceeeeee-cccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCc--eeEEEeeecc
Q 017553 4 TAIGCEPLVGSLTPSKKREYRVTNK-LQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG--VIAALQSYVD 79 (369)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~--~~~~~~~~~~ 79 (369)
+|+++.+....+.......+..... ..+|...|++++|+| ++++||+++.|+ ++||+...+. .+..+.
T Consensus 31 las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp----~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~---- 102 (345)
T 3fm0_A 31 LASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP----CGNYLASASFDATTCIWKKNQDDFECVTTLE---- 102 (345)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECT----TSSEEEEEETTSCEEEEEECCC-EEEEEEEC----
T ss_pred EEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECC----CCCEEEEEECCCcEEEEEccCCCeEEEEEcc----
Confidence 4566666665555443333333333 368999999999999 689999999998 9999987664 233443
Q ss_pred CCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCcc---ccceeeccccceEEEEecCCCCceEEEEeCCCcEEEE
Q 017553 80 EDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK---LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLW 156 (369)
Q Consensus 80 ~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vw 156 (369)
.|...|.+++|+ |+++ +|++|+.|+.|++||+.++. .+..+.+|...|.+++|+| ++.+|++++.|+.|++|
T Consensus 103 -~h~~~v~~v~~s--p~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~i~~w 177 (345)
T 3fm0_A 103 -GHENEVKSVAWA--PSGN-LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP-SQELLASASYDDTVKLY 177 (345)
T ss_dssp -CCSSCEEEEEEC--TTSS-EEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS-SSSCEEEEETTSCEEEE
T ss_pred -CCCCCceEEEEe--CCCC-EEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC-CCCEEEEEeCCCcEEEE
Confidence 588899999998 8998 99999999999999997763 4567788999999999999 88999999999999999
Q ss_pred EccCCcE--EEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeeccee
Q 017553 157 NVQTGIC--ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF 234 (369)
Q Consensus 157 d~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (369)
|.++++. ...+. +|...|.+++|+| ++++|++++.|++|++||........... ..........+.
T Consensus 178 ~~~~~~~~~~~~~~---~h~~~v~~l~~sp-~g~~l~s~s~D~~v~iW~~~~~~~~~~~~--------~~~~~~~~~~~~ 245 (345)
T 3fm0_A 178 REEEDDWVCCATLE---GHESTVWSLAFDP-SGQRLASCSDDRTVRIWRQYLPGNEQGVA--------CSGSDPSWKCIC 245 (345)
T ss_dssp EEETTEEEEEEEEC---CCSSCEEEEEECT-TSSEEEEEETTSCEEEEEEECTTCTTCCC--------CC---CEEEEEE
T ss_pred EecCCCEEEEEEec---CCCCceEEEEECC-CCCEEEEEeCCCeEEEeccccCCCCccce--------eeccCCccceeE
Confidence 9988753 34555 7999999999999 89999999999999999975421110000 000001112233
Q ss_pred eec-cCCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecC
Q 017553 235 IAS-VHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR 311 (369)
Q Consensus 235 ~~~-~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~ 311 (369)
.+. .|...|.+++|+ +..+++++.|+.|++|+.....................|...|.+++|+|++. .+|++++.
T Consensus 246 ~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~-~~laS~s~ 324 (345)
T 3fm0_A 246 TLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEP-GLLASCSD 324 (345)
T ss_dssp EECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSST-TEEEEEET
T ss_pred EecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCc-eEEEEcCC
Confidence 333 388999999998 77999999999999999876543211111112233467889999999999874 38999999
Q ss_pred CCeEEEEEccCCC
Q 017553 312 EGKIFVWELQSSP 324 (369)
Q Consensus 312 dg~i~i~d~~~~~ 324 (369)
||.|++|++.+.+
T Consensus 325 Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 325 DGEVAFWKYQRPE 337 (345)
T ss_dssp TSCEEEEEECC--
T ss_pred CCcEEEEEecCCC
Confidence 9999999998874
No 53
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=5.3e-40 Score=285.61 Aligned_cols=283 Identities=18% Similarity=0.369 Sum_probs=242.5
Q ss_pred ceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccE
Q 017553 22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF 100 (369)
Q Consensus 22 ~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~ 100 (369)
.++....+.+|.+.|.. ++++ ++++|++++.|+ |++||+.+++.+..+. .|...|.+++|. +. +
T Consensus 107 ~~~~~~~l~~h~~~v~~-~~~~----~g~~l~sg~~dg~i~vwd~~~~~~~~~~~-----~h~~~v~~~~~~----~~-~ 171 (445)
T 2ovr_B 107 ELKSPKVLKGHDDHVIT-CLQF----CGNRIVSGSDDNTLKVWSAVTGKCLRTLV-----GHTGGVWSSQMR----DN-I 171 (445)
T ss_dssp CCCCCEEEECSTTSCEE-EEEE----ETTEEEEEETTSCEEEEETTTCCEEEECC-----CCSSCEEEEEEE----TT-E
T ss_pred CcceeEEecccCCCcEE-EEEE----cCCEEEEEECCCcEEEEECCCCcEEEEEc-----CCCCCEEEEEec----CC-E
Confidence 34455678899987643 2455 368999999998 9999999998887776 578899999886 34 8
Q ss_pred EEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEE
Q 017553 101 LVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSV 180 (369)
Q Consensus 101 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~ 180 (369)
+++|+.||.|++||+.+++.+..+.+|...|.++.|++ +.+++|+.||.|++||+++++.+..+. +|...|.++
T Consensus 172 l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~~~~~---~~~~~v~~~ 245 (445)
T 2ovr_B 172 IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCLHVLM---GHVAAVRCV 245 (445)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEEEEEE---CCSSCEEEE
T ss_pred EEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCcEEEEEc---CCcccEEEE
Confidence 99999999999999999999999999999999999964 679999999999999999999999888 799999999
Q ss_pred EecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeeeCcEEEEeecCC
Q 017553 181 DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDN 260 (369)
Q Consensus 181 ~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~ 260 (369)
+| ++.++++++.|+.|++||+++ ...+..+..|...|.++.|++.++++++.|+
T Consensus 246 ~~---~~~~l~~~~~dg~i~iwd~~~-----------------------~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~ 299 (445)
T 2ovr_B 246 QY---DGRRVVSGAYDFMVKVWDPET-----------------------ETCLHTLQGHTNRVYSLQFDGIHVVSGSLDT 299 (445)
T ss_dssp EE---CSSCEEEEETTSCEEEEEGGG-----------------------TEEEEEECCCSSCEEEEEECSSEEEEEETTS
T ss_pred EE---CCCEEEEEcCCCEEEEEECCC-----------------------CcEeEEecCCCCceEEEEECCCEEEEEeCCC
Confidence 99 457899999999999999988 3356667789999999999999999999999
Q ss_pred eEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEee-cCCCccc
Q 017553 261 EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLS-HAQSKSP 339 (369)
Q Consensus 261 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~ 339 (369)
.|++||+++++ .+..+..+...+.++.++ ++ ++++++.||.|++||+.+++ .+..+. +..|...
T Consensus 300 ~i~i~d~~~~~---------~~~~~~~~~~~v~~~~~~--~~--~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~ 364 (445)
T 2ovr_B 300 SIRVWDVETGN---------CIHTLTGHQSLTSGMELK--DN--ILVSGNADSTVKIWDIKTGQ--CLQTLQGPNKHQSA 364 (445)
T ss_dssp CEEEEETTTCC---------EEEEECCCCSCEEEEEEE--TT--EEEEEETTSCEEEEETTTCC--EEEEECSTTSCSSC
T ss_pred eEEEEECCCCC---------EEEEEcCCcccEEEEEEe--CC--EEEEEeCCCeEEEEECCCCc--EEEEEccCCCCCCC
Confidence 99999999876 677777888888777764 43 89999999999999999884 455555 2347889
Q ss_pred eEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 340 IRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 340 v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
|++++|+ +++|++|+.||.|++||+.+
T Consensus 365 v~~~~~~--~~~l~s~~~dg~v~iwd~~~ 391 (445)
T 2ovr_B 365 VTCLQFN--KNFVITSSDDGTVKLWDLKT 391 (445)
T ss_dssp EEEEEEC--SSEEEEEETTSEEEEEETTT
T ss_pred EEEEEEC--CCEEEEEeCCCeEEEEECCC
Confidence 9999995 57999999999999999875
No 54
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3.8e-40 Score=288.21 Aligned_cols=302 Identities=17% Similarity=0.263 Sum_probs=247.3
Q ss_pred ccccccccccccccccccceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCc
Q 017553 4 TAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDK 82 (369)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~ 82 (369)
+++|+.+....+. +....+....+.+|.+.|++++|+| ++ +|++++.|+ |++||+.+++.+..+. .|
T Consensus 135 l~sgs~dg~i~vw--d~~~~~~~~~~~~h~~~V~~l~~~~----~~-~l~s~s~dg~i~vwd~~~~~~~~~~~-----~h 202 (464)
T 3v7d_B 135 VITGADDKMIRVY--DSINKKFLLQLSGHDGGVWALKYAH----GG-ILVSGSTDRTVRVWDIKKGCCTHVFE-----GH 202 (464)
T ss_dssp EEEEETTSCEEEE--ETTTTEEEEEECCCSSCEEEEEECS----TT-EEEEEETTSCEEEEETTTTEEEEEEC-----CC
T ss_pred EEEEcCCCcEEEE--ECCCCcEEEEEeCCCcCEEEEEEcC----CC-EEEEEeCCCCEEEEECCCCcEEEEEC-----CC
Confidence 4455555554444 3455667788899999999999998 34 899999998 9999999998877776 57
Q ss_pred ccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccc-----------------------cceeeccccceEEEEecCC
Q 017553 83 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL-----------------------HKSFVGHGDSINEIRTQPL 139 (369)
Q Consensus 83 ~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~-----------------------~~~~~~~~~~v~~~~~~~~ 139 (369)
...|.+++|.+.+++. ++++|+.||.|++||+.+++. +..+.+|...|.++. +
T Consensus 203 ~~~v~~l~~~~~~~~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~- 278 (464)
T 3v7d_B 203 NSTVRCLDIVEYKNIK-YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--G- 278 (464)
T ss_dssp SSCEEEEEEEESSSCE-EEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEE--E-
T ss_pred CCccEEEEEecCCCCC-EEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEc--C-
Confidence 8899999999878888 999999999999999987653 345677888888884 4
Q ss_pred CCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccC
Q 017553 140 KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTD 219 (369)
Q Consensus 140 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~ 219 (369)
++.++++++.|+.|++||+++++.+..+. +|...|.+++|+| ++.++++++.|+.|++||+++
T Consensus 279 ~~~~l~~~~~d~~i~vwd~~~~~~~~~~~---~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~------------- 341 (464)
T 3v7d_B 279 HGNIVVSGSYDNTLIVWDVAQMKCLYILS---GHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLEN------------- 341 (464)
T ss_dssp ETTEEEEEETTSCEEEEETTTTEEEEEEC---CCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTT-------------
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEec---CCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCC-------------
Confidence 67899999999999999999999999887 7999999999999 889999999999999999998
Q ss_pred CCCCCCCceeecceeeeccCCCceeeeeeeCcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEee
Q 017553 220 LPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSC 299 (369)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 299 (369)
...+..+..|...|.++.|+++++++++.||.|++||+++.. ..... .+...+..++|++
T Consensus 342 ----------~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~---------~~~~~-~~~~~~~~~~~~~ 401 (464)
T 3v7d_B 342 ----------GELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYS---------RKFSY-HHTNLSAITTFYV 401 (464)
T ss_dssp ----------TEEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTCC---------EEEEE-ECTTCCCEEEEEE
T ss_pred ----------CcEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCc---------eeeee-cCCCCccEEEEEe
Confidence 345667788999999999999999999999999999998764 22222 2445677889999
Q ss_pred cCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEe
Q 017553 300 DFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 365 (369)
Q Consensus 300 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~ 365 (369)
+++ ++++++ ||.|++||+.+++ .+... ...|...|.+++|+ +..++++++.||.+.+|-
T Consensus 402 ~~~--~l~~~~-dg~i~iwd~~~g~--~~~~~-~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 402 SDN--ILVSGS-ENQFNIYNLRSGK--LVHAN-ILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp CSS--EEEEEE-TTEEEEEETTTCC--EEESC-TTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred CCC--EEEEec-CCeEEEEECCCCc--EEehh-hccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 996 888887 8999999999984 33331 22677899999998 445666667787665554
No 55
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=3.7e-40 Score=273.51 Aligned_cols=240 Identities=21% Similarity=0.303 Sum_probs=209.8
Q ss_pred CcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCc-----cccceeeccccceEEEEecCCCCceEEEEeCCCcEEE
Q 017553 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE-----KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRL 155 (369)
Q Consensus 81 ~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~v 155 (369)
.|.+.|.+++|+ |++..+|++|+.|++|++|++... .++..+.+|...|.+++|+| ++.+|++|+.|++|++
T Consensus 15 gH~~~V~~l~~~--~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s~s~D~~v~~ 91 (319)
T 3frx_A 15 GHNGWVTSLATS--AGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA-DGAYALSASWDKTLRL 91 (319)
T ss_dssp CCSSCEEEEEEC--SSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEE
T ss_pred cccceEEEEEcc--CCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECC-CCCEEEEEeCCCEEEE
Confidence 689999999998 766449999999999999998643 35678889999999999999 8999999999999999
Q ss_pred EEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceee
Q 017553 156 WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI 235 (369)
Q Consensus 156 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (369)
||+++++.+..+. +|...|.+++|+| ++.+|++++.|++|++||++. ..+..
T Consensus 92 wd~~~~~~~~~~~---~h~~~v~~~~~~~-~~~~l~s~s~D~~i~vwd~~~------------------------~~~~~ 143 (319)
T 3frx_A 92 WDVATGETYQRFV---GHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIKG------------------------QCLAT 143 (319)
T ss_dssp EETTTTEEEEEEE---CCSSCEEEEEECT-TSCEEEEEETTSCEEEEETTS------------------------CEEEE
T ss_pred EECCCCCeeEEEc---cCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCC------------------------CeEEE
Confidence 9999999999888 7999999999999 889999999999999999975 23456
Q ss_pred eccCCCceeeeeeeC--------cEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEE
Q 017553 236 ASVHSNYVDCNRWLG--------DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAA 307 (369)
Q Consensus 236 ~~~~~~~v~~~~~~~--------~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~ 307 (369)
+..|...|.++.+.+ ..+++++.|+.|++||+++.+ ....+..|...|.+++|+|+++ +|+
T Consensus 144 ~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~---------~~~~~~~h~~~v~~~~~sp~g~--~l~ 212 (319)
T 3frx_A 144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ---------IEADFIGHNSNINTLTASPDGT--LIA 212 (319)
T ss_dssp ECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE---------EEEEECCCCSCEEEEEECTTSS--EEE
T ss_pred EeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch---------hheeecCCCCcEEEEEEcCCCC--EEE
Confidence 678999999998862 389999999999999998765 5677788999999999999996 999
Q ss_pred EecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 308 IGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 308 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
+++.||.|++||+.++ ..+..+.. ...|.+++|+|++.+|++++.+ .+++|++.+
T Consensus 213 s~~~dg~i~iwd~~~~--~~~~~~~~---~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~ 267 (319)
T 3frx_A 213 SAGKDGEIMLWNLAAK--KAMYTLSA---QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDP 267 (319)
T ss_dssp EEETTCEEEEEETTTT--EEEEEEEC---CSCEEEEEECSSSSEEEEEETT-EEEEEEETT
T ss_pred EEeCCCeEEEEECCCC--cEEEEecC---CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCc
Confidence 9999999999999988 45555552 2689999999999999988755 599998754
No 56
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.4e-41 Score=284.73 Aligned_cols=251 Identities=18% Similarity=0.208 Sum_probs=203.4
Q ss_pred ecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeec
Q 017553 28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI 106 (369)
Q Consensus 28 ~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~ 106 (369)
...+|...|++++|+| ++.++++ +.++ |+|||+.+++...... +....|...|.+++|+ |+|+ +|++|+.
T Consensus 89 ~~~~~~~~V~~~~~s~----d~~~l~~-s~dg~v~lWd~~~~~~~~~~~-~~~~~h~~~V~~v~~s--pdg~-~l~sgs~ 159 (357)
T 4g56_B 89 AGVQTEAGVTDVAWVS----EKGILVA-SDSGAVELWEILEKESLLVNK-FAKYEHDDIVKTLSVF--SDGT-QAVSGGK 159 (357)
T ss_dssp EEEECSSCEEEEEEET----TTEEEEE-ETTSCEEEC--------CCCC-EEECCCSSCEEEEEEC--SSSS-EEEEEET
T ss_pred ccCCCCCCEEEEEEcC----CCCEEEE-ECCCEEEEeeccccceeEEEe-eccCCCCCCEEEEEEC--CCCC-EEEEEeC
Confidence 3457999999999999 4666554 5555 9999998876544332 1222588899999998 9998 9999999
Q ss_pred CCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCC
Q 017553 107 NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSD 186 (369)
Q Consensus 107 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 186 (369)
||.|++||+.+++.+..+.+|...|.+++|+|.+..++++++.|+.|++||++++++...+.. ..|...+.+++|+|++
T Consensus 160 dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~-~~~~~~v~~v~~sp~~ 238 (357)
T 4g56_B 160 DFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDF-CASDTIPTSVTWHPEK 238 (357)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCC-TTCCSCEEEEEECTTS
T ss_pred CCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeee-ccccccccchhhhhcc
Confidence 999999999999999999999999999999995556899999999999999999887665442 2467789999999966
Q ss_pred ceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--C-cEEEEeecCCeEE
Q 017553 187 IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--G-DFILSKSVDNEIV 263 (369)
Q Consensus 187 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~~~~~d~~i~ 263 (369)
+.+|++|+.|+.|++||+++ ...+..+..|...|.+++|+ + .+|++++.|+.|+
T Consensus 239 ~~~la~g~~d~~i~~wd~~~-----------------------~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~ 295 (357)
T 4g56_B 239 DDTFACGDETGNVSLVNIKN-----------------------PDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVA 295 (357)
T ss_dssp TTEEEEEESSSCEEEEESSC-----------------------GGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEE
T ss_pred cceEEEeecccceeEEECCC-----------------------CcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEE
Confidence 78899999999999999998 34566788899999999997 3 5799999999999
Q ss_pred EecCCCCCCCCCCCccceeeeccCCCCCeeEEEEee-cCCccEEEEecCCCeEEEEEccCC
Q 017553 264 LWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSC-DFHYNAAAIGNREGKIFVWELQSS 323 (369)
Q Consensus 264 i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~~~l~~~~~dg~i~i~d~~~~ 323 (369)
+||+++++ .+. ...|...|++++|+| ++. +|++++.||.|++||+.+.
T Consensus 296 iwd~~~~~---------~~~-~~~H~~~V~~vafsP~d~~--~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 296 VLDADFSE---------VFR-DLSHRDFVTGVAWSPLDHS--KFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EECTTSCE---------EEE-ECCCSSCEEEEEECSSSTT--EEEEEETTSCEEEEECC--
T ss_pred EEECCCCc---------EeE-ECCCCCCEEEEEEeCCCCC--EEEEEcCCCeEEEEECCCC
Confidence 99998775 333 346889999999998 564 8999999999999999764
No 57
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=6.9e-40 Score=286.55 Aligned_cols=281 Identities=16% Similarity=0.285 Sum_probs=239.1
Q ss_pred eeeecccCCcCe-EEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEE
Q 017553 25 VTNKLQEGKRPL-YAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLV 102 (369)
Q Consensus 25 ~~~~~~~h~~~v-~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~ 102 (369)
....+.+|...| .++.|+ +++|++++.|+ |++||+.+++.+..+. .|...|.+++|+ +++ +|+
T Consensus 113 ~~~~l~~h~~~v~~~~~~~------~~~l~sgs~dg~i~vwd~~~~~~~~~~~-----~h~~~V~~l~~~--~~~--~l~ 177 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQFE------DNYVITGADDKMIRVYDSINKKFLLQLS-----GHDGGVWALKYA--HGG--ILV 177 (464)
T ss_dssp EEEEEECCSSSCEEEEEEE------TTEEEEEETTSCEEEEETTTTEEEEEEC-----CCSSCEEEEEEC--STT--EEE
T ss_pred ceEEEcCCCCCcEEEEEEC------CCEEEEEcCCCcEEEEECCCCcEEEEEe-----CCCcCEEEEEEc--CCC--EEE
Confidence 455788999885 666654 47999999998 9999999998887776 588899999997 776 799
Q ss_pred EeecCCeEEEEEcCCccccceeeccccceEEEEecC-CCCceEEEEeCCCcEEEEEccCCcE------------------
Q 017553 103 AGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQP-LKPSLVVSASKDESVRLWNVQTGIC------------------ 163 (369)
Q Consensus 103 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~s~~~dg~i~vwd~~~~~~------------------ 163 (369)
+|+.||+|++||+.+++.+..+.+|...|.+++|++ .++.++++|+.|+.|++||++++..
T Consensus 178 s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 257 (464)
T 3v7d_B 178 SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPE 257 (464)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGG
T ss_pred EEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccC
Confidence 999999999999999999999999999999999984 2678999999999999999987653
Q ss_pred -----EEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeecc
Q 017553 164 -----ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV 238 (369)
Q Consensus 164 -----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (369)
+..+. +|...+.++. + ++.++++++.|+.|++||+++ ...+..+..
T Consensus 258 ~~~~~~~~~~---~~~~~v~~~~--~-~~~~l~~~~~d~~i~vwd~~~-----------------------~~~~~~~~~ 308 (464)
T 3v7d_B 258 ENPYFVGVLR---GHMASVRTVS--G-HGNIVVSGSYDNTLIVWDVAQ-----------------------MKCLYILSG 308 (464)
T ss_dssp GCTTEEEEEC---CCSSCEEEEE--E-ETTEEEEEETTSCEEEEETTT-----------------------TEEEEEECC
T ss_pred CCeEEEEEcc---CccceEEEEc--C-CCCEEEEEeCCCeEEEEECCC-----------------------CcEEEEecC
Confidence 33333 7888998874 4 668899999999999999998 345667788
Q ss_pred CCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEE
Q 017553 239 HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF 316 (369)
Q Consensus 239 ~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~ 316 (369)
|...|.++.|+ ++++++++.|+.|++||+++++ .+..+..|...+.+++|++ .+|++++.||.|+
T Consensus 309 ~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~---------~~~~~~~h~~~v~~~~~~~----~~l~s~s~dg~v~ 375 (464)
T 3v7d_B 309 HTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE---------LMYTLQGHTALVGLLRLSD----KFLVSAAADGSIR 375 (464)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE---------EEEEECCCSSCEEEEEECS----SEEEEEETTSEEE
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc---------EEEEEeCCCCcEEEEEEcC----CEEEEEeCCCcEE
Confidence 99999999998 6799999999999999999876 6788888999999999973 2899999999999
Q ss_pred EEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 317 VWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 317 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
+||+.+.. ...... +...+..++|+|++++|++|+ ||.|++||+++
T Consensus 376 vwd~~~~~--~~~~~~---~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~ 421 (464)
T 3v7d_B 376 GWDANDYS--RKFSYH---HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRS 421 (464)
T ss_dssp EEETTTCC--EEEEEE---CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTT
T ss_pred EEECCCCc--eeeeec---CCCCccEEEEEeCCCEEEEec-CCeEEEEECCC
Confidence 99999874 333332 335678899999999999998 89999999875
No 58
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.7e-40 Score=278.12 Aligned_cols=244 Identities=16% Similarity=0.222 Sum_probs=214.6
Q ss_pred CcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccC
Q 017553 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 160 (369)
Q Consensus 81 ~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 160 (369)
.|...|++++|+ |+++ +|++|+.||+|++||..+++....+..|...|.+++|+| ++..|++|+.|+.+++|++..
T Consensus 62 gH~~~V~~~~~s--~d~~-~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp-~g~~lasg~~d~~i~v~~~~~ 137 (354)
T 2pbi_B 62 GHGNKVLCMDWC--KDKR-RIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAP-SGCAIACGGLDNKCSVYPLTF 137 (354)
T ss_dssp CCSSCEEEEEEC--TTSS-EEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECT-TSSEEEEESTTSEEEEEECCC
T ss_pred CCCCeEEEEEEC--CCCC-EEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECC-CCCEEEEeeCCCCEEEEEEec
Confidence 588999999998 9998 999999999999999999988888999999999999999 899999999999999999864
Q ss_pred C------cEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeeccee
Q 017553 161 G------ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF 234 (369)
Q Consensus 161 ~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (369)
. .....+. +|...|.+++|+| ++..|++++.|++|++||+++ ...+.
T Consensus 138 ~~~~~~~~~~~~~~---~h~~~v~~~~~~~-~~~~l~t~s~D~~v~lwd~~~-----------------------~~~~~ 190 (354)
T 2pbi_B 138 DKNENMAAKKKSVA---MHTNYLSACSFTN-SDMQILTASGDGTCALWDVES-----------------------GQLLQ 190 (354)
T ss_dssp CTTCCSGGGCEEEE---ECSSCEEEEEECS-SSSEEEEEETTSEEEEEETTT-----------------------CCEEE
T ss_pred cccccccccceeee---ccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEeCCC-----------------------CeEEE
Confidence 3 2334444 6999999999999 888999999999999999998 34566
Q ss_pred eeccCCCceeeeeee----CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEec
Q 017553 235 IASVHSNYVDCNRWL----GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN 310 (369)
Q Consensus 235 ~~~~~~~~v~~~~~~----~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~ 310 (369)
.+.+|...|.++.+. ++++++++.|+.|++||+++++ .+..+..|...|.+++|+|+++ +|++++
T Consensus 191 ~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~---------~~~~~~~h~~~v~~v~~~p~~~--~l~s~s 259 (354)
T 2pbi_B 191 SFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ---------CVQAFETHESDVNSVRYYPSGD--AFASGS 259 (354)
T ss_dssp EEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCC---------EEEEECCCSSCEEEEEECTTSS--EEEEEE
T ss_pred EEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCc---------EEEEecCCCCCeEEEEEeCCCC--EEEEEe
Confidence 778899999999885 5799999999999999999876 6778888999999999999996 899999
Q ss_pred CCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 311 REGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 311 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
.|+.|++||+...+ ....+....+...+.+++|+|++++|++|+.|+.|++||+.+
T Consensus 260 ~D~~v~lwd~~~~~--~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~ 315 (354)
T 2pbi_B 260 DDATCRLYDLRADR--EVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLK 315 (354)
T ss_dssp TTSCEEEEETTTTE--EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred CCCeEEEEECCCCc--EEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCC
Confidence 99999999999873 344444334456799999999999999999999999999854
No 59
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.4e-40 Score=278.71 Aligned_cols=279 Identities=14% Similarity=0.201 Sum_probs=231.8
Q ss_pred CCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeE
Q 017553 32 GKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGII 110 (369)
Q Consensus 32 h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i 110 (369)
|.++|.+++|+| +|++++++..+. +.+|............ .|...|.+++|+ |+++ +|++++ ||.|
T Consensus 8 ~~~~v~~~~~s~----dg~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~h~~~v~~~~~~--~~~~-~l~~~~-dg~i 74 (337)
T 1gxr_A 8 GSKPAYSFHVTA----DGQMQPVPFPPDALIGPGIPRHARQINTL-----NHGEVVCAVTIS--NPTR-HVYTGG-KGCV 74 (337)
T ss_dssp EEEECCEEEECS----SSCEEECCCCTTSSSSTTCCSEEEEEEEE-----CCSSCCCEEEEC--SSSS-EEEEEC-BSEE
T ss_pred cCCceeEEEECC----CCCEEEeecCCCcEeccccCCccccceec-----cCCCceEEEEEe--cCCc-EEEEcC-CCeE
Confidence 567899999999 689998887666 6666543332222222 588899999998 9998 899888 9999
Q ss_pred EEEEcCCcccccee---e--ccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCc--EEEEeeccCCCCCcEEEEEec
Q 017553 111 RVIDVSNEKLHKSF---V--GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI--CILIFAGAGGHRNEVLSVDFH 183 (369)
Q Consensus 111 ~vwd~~~~~~~~~~---~--~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~v~~~~~~ 183 (369)
++||+.+++....+ . .|...|.+++|+| ++++|++++.|+.|++||+.+++ ....+. .|...|.+++|+
T Consensus 75 ~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~---~~~~~i~~~~~~ 150 (337)
T 1gxr_A 75 KVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP-DGCTLIVGGEASTLSIWDLAAPTPRIKAELT---SSAPACYALAIS 150 (337)
T ss_dssp EEEETTSTTCCSCSEEEECSCTTSBEEEEEECT-TSSEEEEEESSSEEEEEECCCC--EEEEEEE---CSSSCEEEEEEC
T ss_pred EEEECCCCCceeeeecccccCCCCcEEEEEEcC-CCCEEEEEcCCCcEEEEECCCCCcceeeecc---cCCCceEEEEEC
Confidence 99999887644333 2 6889999999999 88999999999999999999887 455555 699999999999
Q ss_pred CCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCe
Q 017553 184 PSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNE 261 (369)
Q Consensus 184 ~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~ 261 (369)
| +++++++++.|+.|++||++++ ..+..+..|...+.+++|+ ++++++++.|+.
T Consensus 151 ~-~~~~l~~~~~dg~v~~~d~~~~-----------------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 206 (337)
T 1gxr_A 151 P-DSKVCFSCCSDGNIAVWDLHNQ-----------------------TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNT 206 (337)
T ss_dssp T-TSSEEEEEETTSCEEEEETTTT-----------------------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred C-CCCEEEEEeCCCcEEEEeCCCC-----------------------ceeeeeecccCceEEEEECCCCCEEEEEecCCc
Confidence 9 8899999999999999999983 3455667799999999997 779999999999
Q ss_pred EEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceE
Q 017553 262 IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIR 341 (369)
Q Consensus 262 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~ 341 (369)
|++||+++.+ .+..+ .+...+.+++|+|+++ ++++++.++.|++||+.+.+. ..+. .|...|.
T Consensus 207 i~~~d~~~~~---------~~~~~-~~~~~v~~~~~s~~~~--~l~~~~~~~~i~~~~~~~~~~---~~~~--~~~~~v~ 269 (337)
T 1gxr_A 207 VRSWDLREGR---------QLQQH-DFTSQIFSLGYCPTGE--WLAVGMESSNVEVLHVNKPDK---YQLH--LHESCVL 269 (337)
T ss_dssp EEEEETTTTE---------EEEEE-ECSSCEEEEEECTTSS--EEEEEETTSCEEEEETTSSCE---EEEC--CCSSCEE
T ss_pred EEEEECCCCc---------eEeee-cCCCceEEEEECCCCC--EEEEEcCCCcEEEEECCCCCe---EEEc--CCcccee
Confidence 9999998875 33333 3457799999999996 899999999999999998742 2344 7778999
Q ss_pred EEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 342 QTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 342 ~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
+++|+|++++|++++.||.|++||+.+
T Consensus 270 ~~~~~~~~~~l~~~~~dg~i~~~~~~~ 296 (337)
T 1gxr_A 270 SLKFAYCGKWFVSTGKDNLLNAWRTPY 296 (337)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred EEEECCCCCEEEEecCCCcEEEEECCC
Confidence 999999999999999999999999875
No 60
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=2e-40 Score=281.11 Aligned_cols=301 Identities=11% Similarity=0.125 Sum_probs=236.2
Q ss_pred cccccceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecC-Ccee-EEEeeeccCCcccceeEEEeee
Q 017553 17 PSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLE-GGVI-AALQSYVDEDKEESFYTVSWAC 93 (369)
Q Consensus 17 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~-~~~~-~~~~~~~~~~~~~~v~~~~~~~ 93 (369)
.+...+++....+++|.+.|++++|+|+. .+|++|++++.|+ |+|||+.+ +..+ ..+. .|...|.+++|+
T Consensus 23 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-----~h~~~v~~~~~~- 95 (368)
T 3mmy_A 23 TDNHNPMKDIEVTSSPDDSIGCLSFSPPT-LPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ-----MHTGPVLDVCWS- 95 (368)
T ss_dssp CCSSCTTCCEECSSCCSSCEEEEEECCTT-SSSEEEEEEETTSEEEEEEECTTSCEEEEEEE-----ECSSCEEEEEEC-
T ss_pred cCCCCCcceeEeccCCCCceEEEEEcCCC-CCceEEEEECCCCcEEEEEcCCCCceeEEEec-----cccCCEEEEEEC-
Confidence 44567788888899999999999999931 0169999999998 99999987 4444 3444 478899999998
Q ss_pred cCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEe--cCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccC
Q 017553 94 NVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRT--QPLKPSLVVSASKDESVRLWNVQTGICILIFAGAG 171 (369)
Q Consensus 94 ~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 171 (369)
|+++ +|++++.||.|++||+.+++.+. +..|...|.+++| +| ++.+|++++.||.|++||+++++.+..+.
T Consensus 96 -~~~~-~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--- 168 (368)
T 3mmy_A 96 -DDGS-KVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNPMMVLQ--- 168 (368)
T ss_dssp -TTSS-EEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECS-SCEEEEEEETTSEEEEECSSCSSCSEEEE---
T ss_pred -cCCC-EEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCC-CCCEEEEccCCCcEEEEECCCCcEEEEEe---
Confidence 8998 99999999999999999888665 5569999999999 88 88899999999999999999999888887
Q ss_pred CCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeeeCc
Q 017553 172 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGD 251 (369)
Q Consensus 172 ~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 251 (369)
....+.++.+.+ ..+++++.++.+++|+++........ ......+...+.++.+...
T Consensus 169 -~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~ 225 (368)
T 3mmy_A 169 -LPERCYCADVIY---PMAVVATAERGLIVYQLENQPSEFRR-------------------IESPLKHQHRCVAIFKDKQ 225 (368)
T ss_dssp -CSSCEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEEEE-------------------CCCSCSSCEEEEEEEECTT
T ss_pred -cCCCceEEEecC---CeeEEEeCCCcEEEEEeccccchhhh-------------------ccccccCCCceEEEcccCC
Confidence 445777777764 36788889999999999874321111 1111122333333333333
Q ss_pred ----EEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCC------------CeeEEEEeecCCccEEEEecCCCeE
Q 017553 252 ----FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPEC------------DIWFIKFSCDFHYNAAAIGNREGKI 315 (369)
Q Consensus 252 ----~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~------------~i~~~~~s~~~~~~~l~~~~~dg~i 315 (369)
.+++++.|+.|++||++.... ...+..+..|.. .+.+++|+|+++ +|++++.||.|
T Consensus 226 ~~~~~~~~~~~dg~i~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~s~~~dg~i 297 (368)
T 3mmy_A 226 NKPTGFALGSIEGRVAIHYINPPNP------AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHG--TLATVGSDGRF 297 (368)
T ss_dssp SCEEEEEEEETTSEEEEEESSCSCH------HHHSEEEECSEEC----CCCEEECCEEEEEECTTTC--CEEEEETTSCE
T ss_pred CCCCeEEEecCCCcEEEEecCCCCc------cccceeeeeeecccccccccccccceEEEEEecCCC--EEEEEccCCeE
Confidence 499999999999999987631 113444444443 699999999996 89999999999
Q ss_pred EEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEec
Q 017553 316 FVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 366 (369)
Q Consensus 316 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~ 366 (369)
++||+.++ ..+..+. .|..+|++++|+|+|++|++++.|+..+.|++
T Consensus 298 ~iwd~~~~--~~~~~~~--~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 298 SFWDKDAR--TKLKTSE--QLDQPISACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp EEEETTTT--EEEEECC--CCSSCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred EEEECCCC--cEEEEec--CCCCCceEEEECCCCCeEEEEecccccccccc
Confidence 99999987 4566666 78899999999999999999999886555543
No 61
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.7e-40 Score=271.61 Aligned_cols=258 Identities=19% Similarity=0.289 Sum_probs=207.3
Q ss_pred eecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCC--ceeEEEeeeccCCcccceeEEEeeecCCCccEEEE
Q 017553 27 NKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEG--GVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVA 103 (369)
Q Consensus 27 ~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~ 103 (369)
..+.+|.+.|++++|+| +|++||+++.|+ |+|||+..+ +.+..+. .|...|.+++|+...++. +|++
T Consensus 3 ~~~~~h~~~V~~~~~s~----~g~~las~s~D~~v~iw~~~~~~~~~~~~l~-----gH~~~V~~v~~s~~~~g~-~l~s 72 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDY----YGKRMATCSSDKTIKIFEVEGETHKLIDTLT-----GHEGPVWRVDWAHPKFGT-ILAS 72 (297)
T ss_dssp EECCSCSSCEEEEEECT----TSSEEEEEETTSCEEEEEBCSSCBCCCEEEC-----CCSSCEEEEEECCGGGCS-EEEE
T ss_pred eeccCCcCceEEEEECC----CCCEEEEEeCCCEEEEEecCCCCcEEEEEEc-----cccCCeEEEEecCCCcCC-EEEE
Confidence 34689999999999999 689999999999 999998643 4455555 588899999998433477 9999
Q ss_pred eecCCeEEEEEcCCcc--ccceeeccccceEEEEecCCC-CceEEEEeCCCcEEEEEccCCcE--EEEeeccCCCCCcEE
Q 017553 104 GGINGIIRVIDVSNEK--LHKSFVGHGDSINEIRTQPLK-PSLVVSASKDESVRLWNVQTGIC--ILIFAGAGGHRNEVL 178 (369)
Q Consensus 104 ~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~v~ 178 (369)
|+.||+|++||+.+++ .+..+.+|...|.+++|+|+. +.+|++++.|+.|++||++++.. ...+. +|...|.
T Consensus 73 ~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~---~h~~~v~ 149 (297)
T 2pm7_B 73 CSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIID---AHAIGVN 149 (297)
T ss_dssp EETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEE---CCSSCEE
T ss_pred EcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeee---cccCccc
Confidence 9999999999998774 556777899999999999932 78999999999999999987632 33444 7999999
Q ss_pred EEEecCCC------------ceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeee
Q 017553 179 SVDFHPSD------------IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCN 246 (369)
Q Consensus 179 ~~~~~~~~------------~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 246 (369)
+++|+|.. +.+|++|+.|++|++||++.+... ......+.+|...|.++
T Consensus 150 ~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~-------------------~~~~~~l~~H~~~V~~v 210 (297)
T 2pm7_B 150 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT-------------------YVLESTLEGHSDWVRDV 210 (297)
T ss_dssp EEEECCCC------------CCEEEEEETTSCEEEEEEETTTTE-------------------EEEEEEECCCSSCEEEE
T ss_pred eEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCce-------------------EEEEEEecCCCCceEEE
Confidence 99999931 468999999999999999873210 11345678899999999
Q ss_pred eeeC-----cEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEcc
Q 017553 247 RWLG-----DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ 321 (369)
Q Consensus 247 ~~~~-----~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~ 321 (369)
+|++ .+|++++.|+.|++||++...... ...+.....+...+.+++|+|+++ +|++++.||.|++|+..
T Consensus 211 ~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~----~~~~~~~~~~~~~v~~~~~s~~g~--~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 211 AWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPW----KKTLLKEEKFPDVLWRASWSLSGN--VLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EECCCCSSSEEEEEEETTSCEEEEEESSTTSCC----EEEESSSSCCSSCEEEEEECSSSC--CEEEEETTSCEEEEEEC
T ss_pred EECCCCCCceEEEEEECCCcEEEEEeCCCCCcc----ceeeeecccCCCcEEEEEECCCCC--EEEEEcCCCcEEEEEEC
Confidence 9983 689999999999999997643110 001111234567899999999996 89999999999999987
Q ss_pred C
Q 017553 322 S 322 (369)
Q Consensus 322 ~ 322 (369)
.
T Consensus 285 ~ 285 (297)
T 2pm7_B 285 L 285 (297)
T ss_dssp T
T ss_pred C
Confidence 4
No 62
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=6.5e-40 Score=281.95 Aligned_cols=318 Identities=17% Similarity=0.222 Sum_probs=239.8
Q ss_pred eeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeec--------cCCcccceeEEEeeec
Q 017553 24 RVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYV--------DEDKEESFYTVSWACN 94 (369)
Q Consensus 24 ~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~--------~~~~~~~v~~~~~~~~ 94 (369)
+....+++|.+.|++++|+|. ++++||+++.|+ |++||+.++.....+.... ...|...|.+++|+
T Consensus 34 ~~~~~~~~h~~~v~~~~~s~~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-- 108 (408)
T 4a11_B 34 KDRDVERIHGGGINTLDIEPV---EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWY-- 108 (408)
T ss_dssp TTEEECCCCSSCEEEEEECTT---TCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEEC--
T ss_pred cceeeeeccCCcEEEEEEecC---CCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEc--
Confidence 344567889999999999993 378999999998 9999998876655443211 12488899999998
Q ss_pred C-CCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCC--CceEEEEeCCCcEEEEEccCCcEEEEeeccC
Q 017553 95 V-DGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLK--PSLVVSASKDESVRLWNVQTGICILIFAGAG 171 (369)
Q Consensus 95 ~-~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 171 (369)
| ++. +|++++.||.|++||+.+++....+. +...+.++.|+|.. +.++++++.|+.|++||+++++.+..+.
T Consensus 109 ~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--- 183 (408)
T 4a11_B 109 PHDTG-MFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQ--- 183 (408)
T ss_dssp TTCTT-CEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEEC---
T ss_pred cCCCc-EEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeec---
Confidence 7 455 89999999999999999998887776 77889999999842 3399999999999999999999888887
Q ss_pred CCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--
Q 017553 172 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-- 249 (369)
Q Consensus 172 ~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-- 249 (369)
+|...|.+++|+|++..++++++.||.|++||++............ ..............|...|.+++|+
T Consensus 184 ~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~~~~ 256 (408)
T 4a11_B 184 GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQH-------NGKKSQAVESANTAHNGKVNGLCFTSD 256 (408)
T ss_dssp CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTT-------TTCSCCCTTTSSCSCSSCEEEEEECTT
T ss_pred CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccc-------ccccceeeccccccccCceeEEEEcCC
Confidence 7999999999999434479999999999999998853211111000 0000111223346788999999997
Q ss_pred CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEE
Q 017553 250 GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA 329 (369)
Q Consensus 250 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 329 (369)
++++++++.|+.|++||+++.+........ ........+ ...+..... ..+++++.++.|++||+.+++ .+.
T Consensus 257 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~i~v~d~~~~~--~~~ 328 (408)
T 4a11_B 257 GLHLLTVGTDNRMRLWNSSNGENTLVNYGK----VCNNSKKGL-KFTVSCGCS-SEFVFVPYGSTIAVYTVYSGE--QIT 328 (408)
T ss_dssp SSEEEEEETTSCEEEEETTTCCBCCCCCCC----CCCCCSSCC-CCEECCSSS-SCEEEEEETTEEEEEETTTCC--EEE
T ss_pred CCEEEEecCCCeEEEEECCCCccceecccc----ccccccccc-eeEEecCCC-ceEEEEecCCEEEEEECcCCc--cee
Confidence 779999999999999999987642211100 000111111 122222222 256777889999999999984 556
Q ss_pred EeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 330 RLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 330 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
.+. +|...|++++|+|++++|++++.||.|++||+.+
T Consensus 329 ~~~--~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 365 (408)
T 4a11_B 329 MLK--GHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSL 365 (408)
T ss_dssp EEC--CCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC
T ss_pred eec--cCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCC
Confidence 666 7889999999999999999999999999999875
No 63
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-40 Score=306.76 Aligned_cols=337 Identities=12% Similarity=0.112 Sum_probs=245.9
Q ss_pred ccccccccccccccccccceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCc
Q 017553 4 TAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDK 82 (369)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~ 82 (369)
+|+|+.+....+.. ....+....+ .|..+|++++|+| +++|++++.|+ |+|||+.+++.+..+. +
T Consensus 32 lAsgs~Dg~I~lw~--~~~~~~~~~~-~~~~~V~~l~fsp-----g~~L~S~s~D~~v~lWd~~~~~~~~~~~------~ 97 (902)
T 2oaj_A 32 LAIATVTGEVHIYG--QQQVEVVIKL-EDRSAIKEMRFVK-----GIYLVVINAKDTVYVLSLYSQKVLTTVF------V 97 (902)
T ss_dssp EEEEETTSEEEEEC--STTCEEEEEC-SSCCCEEEEEEET-----TTEEEEEETTCEEEEEETTTCSEEEEEE------C
T ss_pred EEEEeCCCEEEEEe--CCCcEEEEEc-CCCCCEEEEEEcC-----CCEEEEEECcCeEEEEECCCCcEEEEEc------C
Confidence 56666666555543 3333443333 5788999999999 56999999998 9999999988877664 4
Q ss_pred ccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCcccc-----------ceeeccccceEEEEecCCCCceEEEEeCCC
Q 017553 83 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLH-----------KSFVGHGDSINEIRTQPLKPSLVVSASKDE 151 (369)
Q Consensus 83 ~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~-----------~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg 151 (369)
...|.+++|+ |++. +|++|+.||.|++||+.+++.. ..+.+|.+.|.+++|+|.+...|++|+.||
T Consensus 98 ~~~V~~v~~s--p~g~-~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg 174 (902)
T 2oaj_A 98 PGKITSIDTD--ASLD-WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYV 174 (902)
T ss_dssp SSCEEEEECC--TTCS-EEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSC
T ss_pred CCCEEEEEEC--CCCC-EEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCC
Confidence 4689888888 9998 9999999999999999887653 345679999999999995567999999999
Q ss_pred cEEEEEccCCcEEEEeecc---------------CCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeee----
Q 017553 152 SVRLWNVQTGICILIFAGA---------------GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVE---- 212 (369)
Q Consensus 152 ~i~vwd~~~~~~~~~~~~~---------------~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~---- 212 (369)
.| +||+++++.+..+... ..|...|.+++|+| ++.+|++++.|++|++||+++++....
T Consensus 175 ~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp-dg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~ 252 (902)
T 2oaj_A 175 TL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP-NSLHIITIHEDNSLVFWDANSGHMIMARTVF 252 (902)
T ss_dssp EE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT-TSSEEEEEETTCCEEEEETTTCCEEEEECSS
T ss_pred cE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCcEEEEEeec
Confidence 99 9999999988877621 12357899999999 899999999999999999987543221
Q ss_pred ----------------------eeeeccC--------------CCC-CC--CCcee------------------------
Q 017553 213 ----------------------KSFTWTD--------------LPS-KF--PTKYV------------------------ 229 (369)
Q Consensus 213 ----------------------~~~~~~~--------------~~~-~~--~~~~~------------------------ 229 (369)
..+.|.. ... .. .....
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~ 332 (902)
T 2oaj_A 253 ETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPK 332 (902)
T ss_dssp CSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCS
T ss_pred ccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCcc
Confidence 0011100 000 00 00000
Q ss_pred -----------------------------e-----------cceee------------------eccCCCceee------
Q 017553 230 -----------------------------Q-----------FPVFI------------------ASVHSNYVDC------ 245 (369)
Q Consensus 230 -----------------------------~-----------~~~~~------------------~~~~~~~v~~------ 245 (369)
. ..+.. +..|...|++
T Consensus 333 ~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~ 412 (902)
T 2oaj_A 333 QMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASV 412 (902)
T ss_dssp EEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEE
T ss_pred ceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEc
Confidence 0 00000 0111122332
Q ss_pred ----------------------------eeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceee-ec-----cCCC
Q 017553 246 ----------------------------NRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQ-KY-----PVPE 289 (369)
Q Consensus 246 ----------------------------~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-~~-----~~~~ 289 (369)
++|+ ++++++|+.|++|++||+.++..... ..+. .+ ..|.
T Consensus 413 ~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~----~~~~~~l~~~~~~~h~ 488 (902)
T 2oaj_A 413 PNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDN----ASFEVNLSRTLNKAKE 488 (902)
T ss_dssp EHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTT----BCEEEEHHHHTTCSSS
T ss_pred CHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCC----ceEEeechhhcCCCCC
Confidence 3333 67999999999999999988742110 0111 11 1677
Q ss_pred CCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCc-------------------------------------------e
Q 017553 290 CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP-------------------------------------------V 326 (369)
Q Consensus 290 ~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~-------------------------------------------~ 326 (369)
..|.+++|+|+++ +||+|+.||+|++||+.+++. .
T Consensus 489 ~~V~svafspdg~--~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 566 (902)
T 2oaj_A 489 LAVDKISFAAETL--ELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFM 566 (902)
T ss_dssp CCEEEEEEETTTT--EEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEE
T ss_pred CceeEEEecCCCC--eEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccc
Confidence 8999999999997 999999999999999987631 1
Q ss_pred eEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 327 LIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 327 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
.+..+. +|.+.|++++|+||| +||+|+.|++|+|||+++
T Consensus 567 ~~~~l~--~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~ 605 (902)
T 2oaj_A 567 PSTAVH--ANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRG 605 (902)
T ss_dssp EEEEEC--CCSCSEEEEEECBTS-EEEEEETTSEEEEEETTT
T ss_pred eeEEEE--cCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCC
Confidence 244444 788999999999999 999999999999999864
No 64
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=4.1e-40 Score=286.68 Aligned_cols=290 Identities=14% Similarity=0.221 Sum_probs=220.6
Q ss_pred cCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCc-----------eeEEEeeeccCCcc------------cce
Q 017553 31 EGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG-----------VIAALQSYVDEDKE------------ESF 86 (369)
Q Consensus 31 ~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~-----------~~~~~~~~~~~~~~------------~~v 86 (369)
.|.+.|++++|+| +|++||+|+.|+ |+||++.+++ ....+. .|. ..|
T Consensus 26 ~~~~~V~~v~~s~----~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~-----~h~~~~~~~~~~~~~~~V 96 (447)
T 3dw8_B 26 AEADIISTVEFNH----SGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQ-----SHEPEFDYLKSLEIEEKI 96 (447)
T ss_dssp CGGGSEEEEEECS----SSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEE-----CCCCEEEGGGTEEECCCC
T ss_pred cccCcEEEEEECC----CCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccc-----cccccccccccccccCce
Confidence 3678999999999 689999999998 9999998776 244444 354 789
Q ss_pred eEEEeeecCCC--ccEEEEeecCCeEEEEEcCCcccc---------------------------------------ce-e
Q 017553 87 YTVSWACNVDG--IPFLVAGGINGIIRVIDVSNEKLH---------------------------------------KS-F 124 (369)
Q Consensus 87 ~~~~~~~~~~g--~~~l~~~~~dg~i~vwd~~~~~~~---------------------------------------~~-~ 124 (369)
.+++|+ |++ . .|++++.||.|++||+.+++.. .. .
T Consensus 97 ~~l~~~--~~~~~~-~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (447)
T 3dw8_B 97 NKIRWL--PQKNAA-QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA 173 (447)
T ss_dssp CEEEEC--CCCSSS-EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC
T ss_pred EEEEEc--CCCCcc-eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec
Confidence 999998 776 5 8999999999999998765431 12 3
Q ss_pred eccccceEEEEecCCCCceEEEEeCCCcEEEEEccC-CcEEEEee----ccCCCCCcEEEEEecCCCc-eEEEEEeeCCc
Q 017553 125 VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT-GICILIFA----GAGGHRNEVLSVDFHPSDI-YRIASCGMDNT 198 (369)
Q Consensus 125 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~----~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~ 198 (369)
.+|...|.+++|+| ++.+|++| .|+.|++||+++ ++.+..+. ...+|...|.+++|+| ++ .+|++++.||.
T Consensus 174 ~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~s~~~dg~ 250 (447)
T 3dw8_B 174 NAHTYHINSISINS-DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP-NSCNTFVYSSSKGT 250 (447)
T ss_dssp SCCSSCCCEEEECT-TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS-SCTTEEEEEETTSC
T ss_pred cCCCcceEEEEEcC-CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC-CCCcEEEEEeCCCe
Confidence 57999999999999 88999998 799999999984 44444321 1237999999999999 65 89999999999
Q ss_pred EEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCC------------Cceeeeeee--CcEEEEeecCCeEEE
Q 017553 199 VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS------------NYVDCNRWL--GDFILSKSVDNEIVL 264 (369)
Q Consensus 199 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~v~~~~~~--~~~l~~~~~d~~i~i 264 (369)
|++||++++... ......+..|. ..|.+++|+ +++|++++. +.|++
T Consensus 251 i~iwd~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~i 310 (447)
T 3dw8_B 251 IRLCDMRASALC-------------------DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKV 310 (447)
T ss_dssp EEEEETTTCSSS-------------------CTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEE
T ss_pred EEEEECcCCccc-------------------cceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEE
Confidence 999999984321 01133444444 489999998 779999888 99999
Q ss_pred ecCCC-CCCCCCCCccceeeeccCCCC---------------CeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeE
Q 017553 265 WEPKM-KEQSPGEGTADILQKYPVPEC---------------DIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLI 328 (369)
Q Consensus 265 ~d~~~-~~~~~~~~~~~~~~~~~~~~~---------------~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 328 (369)
||+++ .+ .+..+..|.. .+..++|+|+++ +|++|+.||.|++||+.+++...+
T Consensus 311 wd~~~~~~---------~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~--~l~s~s~dg~v~iwd~~~~~~~~~ 379 (447)
T 3dw8_B 311 WDLNMENR---------PVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDS--VVMTGSYNNFFRMFDRNTKRDITL 379 (447)
T ss_dssp EETTCCSS---------CSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSS--EEEEECSTTEEEEEETTTCCEEEE
T ss_pred EeCCCCcc---------ccceeeccccccccccccccccccccceEEEECCCCC--EEEEeccCCEEEEEEcCCCcceee
Confidence 99987 44 3344444432 133489999996 899999999999999998854321
Q ss_pred EEee----------------------------cCCCccceEEEEecCCCCEEEEeecCCeEEEEecC
Q 017553 329 ARLS----------------------------HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 329 ~~~~----------------------------~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 367 (369)
.... .......|..++|+|++++||+++.++ +++|.-+
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 380 EASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp ECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred eecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 1100 112345789999999999999998876 8888743
No 65
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.6e-41 Score=287.39 Aligned_cols=267 Identities=16% Similarity=0.275 Sum_probs=219.5
Q ss_pred EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCC
Q 017553 60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPL 139 (369)
Q Consensus 60 v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 139 (369)
+..|+..+......+. .|...|++++|+ |+++ +|++|+.||+|++||+.+++....+..|...|.+++|+|
T Consensus 48 ~~~~~~~~~~~~~~l~-----gH~~~V~~~~~s--p~~~-~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~- 118 (380)
T 3iz6_a 48 AVSFNPTDLVCCRTLQ-----GHSGKVYSLDWT--PEKN-WIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAP- 118 (380)
T ss_dssp CCCCCCCCCEEEEEEC-----CCSSCEEEEEEC--TTSS-CEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECT-
T ss_pred ccccccceeEEeeccc-----ccccEEEEEEEc--CCCC-EEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECC-
Confidence 4456655555566666 588999999998 8998 999999999999999999999999999999999999999
Q ss_pred CCceEEEEeCCCcEEEEEccCCc-------EEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeee
Q 017553 140 KPSLVVSASKDESVRLWNVQTGI-------CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVE 212 (369)
Q Consensus 140 ~~~~l~s~~~dg~i~vwd~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~ 212 (369)
++.+|++|+.|+.|++||+.+.. ....+. +|.+.|.++.|.|.++..|++|+.|++|++||++++.....
T Consensus 119 ~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~---gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~ 195 (380)
T 3iz6_a 119 NGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLT---GHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISI 195 (380)
T ss_dssp TSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCC---CCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEE
T ss_pred CCCEEEEeeCCCcEEEEECCCCccccCCccceeecc---CCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEE
Confidence 89999999999999999987532 222333 79999999999996677899999999999999998532211
Q ss_pred eeeeccCCCCCCCCceeecceeeeccCCCceeeeeee---CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCC
Q 017553 213 KSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPE 289 (369)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 289 (369)
.. .....+|...|.++.|+ ++++++|+.|+.|++||++.... .+..+..|.
T Consensus 196 ~~------------------~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~--------~~~~~~~h~ 249 (380)
T 3iz6_a 196 FG------------------SEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR--------AVRTYHGHE 249 (380)
T ss_dssp EC------------------CCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCC--------CCEEECCCS
T ss_pred ee------------------cccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCc--------ceEEECCcC
Confidence 10 01125688899999985 67999999999999999985432 567788899
Q ss_pred CCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeec-----CCCccceEEEEecCCCCEEEEeecCCeEEEE
Q 017553 290 CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSH-----AQSKSPIRQTAMSYDGSTILSCCEDGAIWRW 364 (369)
Q Consensus 290 ~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw 364 (369)
..|.+++|+|+++ +|++|+.||.|++||+.+++ .+..+.. ..+...|++++|+|+|++|++|+.||.|++|
T Consensus 250 ~~v~~v~~~p~~~--~l~s~s~D~~i~lwd~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vw 325 (380)
T 3iz6_a 250 GDINSVKFFPDGQ--RFGTGSDDGTCRLFDMRTGH--QLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVW 325 (380)
T ss_dssp SCCCEEEECTTSS--EEEEECSSSCEEEEETTTTE--EEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEE
T ss_pred CCeEEEEEecCCC--eEEEEcCCCeEEEEECCCCc--EEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEE
Confidence 9999999999996 89999999999999999984 3444431 1122358999999999999999999999999
Q ss_pred ecCC
Q 017553 365 DAIP 368 (369)
Q Consensus 365 ~~~~ 368 (369)
|+..
T Consensus 326 d~~~ 329 (380)
T 3iz6_a 326 DTLL 329 (380)
T ss_dssp ETTT
T ss_pred ECCC
Confidence 9753
No 66
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=5.6e-41 Score=278.04 Aligned_cols=258 Identities=20% Similarity=0.284 Sum_probs=202.0
Q ss_pred ecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCce--eEEEeeeccCCcccceeEEEeeecCCCccEEEEe
Q 017553 28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGV--IAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG 104 (369)
Q Consensus 28 ~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~ 104 (369)
.+.+|.+.|++++|+| +|++||+++.|+ |+|||+.++.. +..+. .|...|.+++|+...++. +|++|
T Consensus 8 ~~~~H~~~V~~v~~s~----~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~-----gH~~~V~~v~~~~~~~~~-~l~s~ 77 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDY----YGTRLATCSSDRSVKIFDVRNGGQILIADLR-----GHEGPVWQVAWAHPMYGN-ILASC 77 (316)
T ss_dssp ------CCEEEEEECG----GGCEEEEEETTTEEEEEEEETTEEEEEEEEE-----CCSSCEEEEEECCGGGSS-CEEEE
T ss_pred ecccccCeEEEeeEcC----CCCEEEEEeCCCeEEEEEecCCCcEEEEEEc-----CCCccEEEEEeCCCCCCC-EEEEE
Confidence 4579999999999999 689999999999 99999987753 33444 588899999997333476 89999
Q ss_pred ecCCeEEEEEcCCcc--ccceeeccccceEEEEecCCC-CceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEE
Q 017553 105 GINGIIRVIDVSNEK--LHKSFVGHGDSINEIRTQPLK-PSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVD 181 (369)
Q Consensus 105 ~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~ 181 (369)
+.|++|++||+++++ ....+.+|...|.+++|+|+. +.+|++|+.|+.|++||++.+..........+|...|.+++
T Consensus 78 s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~ 157 (316)
T 3bg1_A 78 SYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVS 157 (316)
T ss_dssp ETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCE
T ss_pred ECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEE
Confidence 999999999998874 456778899999999999932 77999999999999999987644333333347999999999
Q ss_pred ecCCC----------------ceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceee
Q 017553 182 FHPSD----------------IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDC 245 (369)
Q Consensus 182 ~~~~~----------------~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 245 (369)
|+|.. +.+|++|+.|++|++||++.... ..+...+.+|...|.+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~--------------------~~~~~~l~~h~~~V~~ 217 (316)
T 3bg1_A 158 WAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ--------------------WKEEQKLEAHSDWVRD 217 (316)
T ss_dssp ECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSC--------------------EEEEECCBCCSSCEEE
T ss_pred EccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCc--------------------cceeeecccCCCceEE
Confidence 99831 36899999999999999975210 1234567789999999
Q ss_pred eeeeC------cEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEE
Q 017553 246 NRWLG------DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE 319 (369)
Q Consensus 246 ~~~~~------~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d 319 (369)
++|++ ++|++++.|++|++|++.+...... ....+..+...|.+++|+|+++ +|++++.||.|++|+
T Consensus 218 v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~-----~~~~~~~~~~~v~~v~~sp~g~--~las~~~D~~v~lw~ 290 (316)
T 3bg1_A 218 VAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTW-----SPKLLHKFNDVVWHVSWSITAN--ILAVSGGDNKVTLWK 290 (316)
T ss_dssp EECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCC-----BCCEEEECSSCEEEEEECTTTC--CEEEEESSSCEEEEE
T ss_pred EEecCCCCCCCceEEEEcCCCeEEEEEccCccccch-----hhhhhhcCCCcEEEEEEcCCCC--EEEEEcCCCeEEEEE
Confidence 99973 6899999999999999876321100 1122344678899999999996 899999999999999
Q ss_pred ccC
Q 017553 320 LQS 322 (369)
Q Consensus 320 ~~~ 322 (369)
...
T Consensus 291 ~~~ 293 (316)
T 3bg1_A 291 ESV 293 (316)
T ss_dssp ECT
T ss_pred ECC
Confidence 763
No 67
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=4.3e-41 Score=278.74 Aligned_cols=253 Identities=17% Similarity=0.212 Sum_probs=203.3
Q ss_pred CcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCcc--ccceeeccccceEEEEecCC-CCceEEEEeCCCcEEEEE
Q 017553 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK--LHKSFVGHGDSINEIRTQPL-KPSLVVSASKDESVRLWN 157 (369)
Q Consensus 81 ~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~dg~i~vwd 157 (369)
.|...|++++|+ |+|+ +|++|+.|++|++||+.+++ .+..+.+|.+.|.+++|+|. ++++|++|+.|++|++||
T Consensus 11 ~H~~~V~~v~~s--~~g~-~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 11 SHEDMIHDAQMD--YYGT-RLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ---CCEEEEEEC--GGGC-EEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred cccCeEEEeeEc--CCCC-EEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 688999999998 8898 99999999999999998764 46788999999999999862 478999999999999999
Q ss_pred ccCCc--EEEEeeccCCCCCcEEEEEecCCC-ceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeeccee
Q 017553 158 VQTGI--CILIFAGAGGHRNEVLSVDFHPSD-IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF 234 (369)
Q Consensus 158 ~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (369)
+++++ .+..+. +|...|.+++|+|++ +.+|++++.|++|++||++.... .....
T Consensus 88 ~~~~~~~~~~~~~---~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~--------------------~~~~~ 144 (316)
T 3bg1_A 88 EENGTWEKSHEHA---GHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ--------------------WEVKK 144 (316)
T ss_dssp CSSSCCCEEEEEC---CCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC--------------------EEECC
T ss_pred CCCCcceEEEEcc---CCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC--------------------cceee
Confidence 99874 555555 799999999999932 78999999999999999987311 01123
Q ss_pred eeccCCCceeeeeeeC-------------------cEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEE
Q 017553 235 IASVHSNYVDCNRWLG-------------------DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFI 295 (369)
Q Consensus 235 ~~~~~~~~v~~~~~~~-------------------~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 295 (369)
....|...+.++.|++ ++|++++.|+.|++||++... ....+..+..|...|.++
T Consensus 145 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~------~~~~~~~l~~h~~~V~~v 218 (316)
T 3bg1_A 145 INNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG------QWKEEQKLEAHSDWVRDV 218 (316)
T ss_dssp BTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTS------CEEEEECCBCCSSCEEEE
T ss_pred eeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCC------ccceeeecccCCCceEEE
Confidence 3456777888888763 589999999999999996542 112566778899999999
Q ss_pred EEeecCC--ccEEEEecCCCeEEEEEccCCCc--eeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecC
Q 017553 296 KFSCDFH--YNAAAIGNREGKIFVWELQSSPP--VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 296 ~~s~~~~--~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 367 (369)
+|+|++. ..+|++++.||.|++||+.+... .....+. .|...|.+++|+|++++||+++.||.|++|+..
T Consensus 219 ~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~--~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 219 AWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLH--KFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp ECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEE--ECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhh--cCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 9999862 24899999999999999986311 1111223 566899999999999999999999999999975
No 68
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3.1e-39 Score=292.25 Aligned_cols=316 Identities=16% Similarity=0.190 Sum_probs=235.0
Q ss_pred eeeeecccCCcCeEEEEEeeccCCCcc-EEEEecCCc-EEEEEecCCceeEEEeeeccCCccc---ceeEEEeeecCC-C
Q 017553 24 RVTNKLQEGKRPLYAVVFNFIDSRYFN-VFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEE---SFYTVSWACNVD-G 97 (369)
Q Consensus 24 ~~~~~~~~h~~~v~~~~~s~~~~~~~~-~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~-g 97 (369)
+....+.+|...|++++|+| ++. ++++++.|+ |++||+.+++.+..+. .|.. .|.+++|+ |+ +
T Consensus 151 ~~~~~~~~~~~~v~~~~~~~----~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~-----~~~~~~~~v~~~~~~--~~~~ 219 (615)
T 1pgu_A 151 NSLGEVSGHSQRINACHLKQ----SRPMRSMTVGDDGSVVFYQGPPFKFSASDR-----THHKQGSFVRDVEFS--PDSG 219 (615)
T ss_dssp CEEEECCSCSSCEEEEEECS----SSSCEEEEEETTTEEEEEETTTBEEEEEEC-----SSSCTTCCEEEEEEC--STTC
T ss_pred CcceeeecCCccEEEEEECC----CCCcEEEEEeCCCcEEEEeCCCcceeeeec-----ccCCCCceEEEEEEC--CCCC
Confidence 35567789999999999999 455 899999988 9999998888877776 4666 89999988 99 8
Q ss_pred ccEEEEeecCCeEEEEEcCCcccccee-e---ccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeecc---
Q 017553 98 IPFLVAGGINGIIRVIDVSNEKLHKSF-V---GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGA--- 170 (369)
Q Consensus 98 ~~~l~~~~~dg~i~vwd~~~~~~~~~~-~---~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--- 170 (369)
+ +|++++.||.|++||+.+++.+..+ . .|...|.+++|+ ++.+|++++.|+.|++||+++++.+..+...
T Consensus 220 ~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~ 296 (615)
T 1pgu_A 220 E-FVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL--DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQ 296 (615)
T ss_dssp C-EEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES--SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTC
T ss_pred C-EEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc--CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCc
Confidence 8 9999999999999999999998888 6 899999999999 7889999999999999999988776665521
Q ss_pred ---------------------------------------CCCCCcEEEEEecCC--------------------------
Q 017553 171 ---------------------------------------GGHRNEVLSVDFHPS-------------------------- 185 (369)
Q Consensus 171 ---------------------------------------~~~~~~v~~~~~~~~-------------------------- 185 (369)
.+|...|.+++| |+
T Consensus 297 ~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v 375 (615)
T 1pgu_A 297 LGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLI 375 (615)
T ss_dssp GGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCE
T ss_pred ccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCce
Confidence 123333333333 20
Q ss_pred ------CceEEEEEeeCCcEEEEEccCceeee---ee----------------eeecc--CC--------C---------
Q 017553 186 ------DIYRIASCGMDNTVKIWSMKEFWTYV---EK----------------SFTWT--DL--------P--------- 221 (369)
Q Consensus 186 ------~~~~l~~~~~d~~v~i~d~~~~~~~~---~~----------------~~~~~--~~--------~--------- 221 (369)
.+..+++++.|+.+++||++...... .. ...+. .. .
T Consensus 376 ~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (615)
T 1pgu_A 376 VSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS 455 (615)
T ss_dssp EEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC
T ss_pred EEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc
Confidence 13344444444444444443311000 00 00000 00 0
Q ss_pred CC------C-CCce-----eecce--eeeccCCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeec
Q 017553 222 SK------F-PTKY-----VQFPV--FIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY 285 (369)
Q Consensus 222 ~~------~-~~~~-----~~~~~--~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 285 (369)
.. . .... ..... ..+..|...|.+++|+ +++|++++.|+.|++||+.+++ .+..+
T Consensus 456 ~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~---------~~~~~ 526 (615)
T 1pgu_A 456 QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE---------VKTSR 526 (615)
T ss_dssp SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE---------EEECC
T ss_pred CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCc---------ceeEe
Confidence 00 0 0000 00001 4556789999999996 7899999999999999999876 56666
Q ss_pred cC-CCCCeeEEEEee----------cCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEE
Q 017553 286 PV-PECDIWFIKFSC----------DFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILS 354 (369)
Q Consensus 286 ~~-~~~~i~~~~~s~----------~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 354 (369)
.. |...|++++|+| +++ +|++++.||.|++||+.++. ..+..+. +|...|++++|+|+++ |++
T Consensus 527 ~~~h~~~v~~~~~sp~~~~~~~~~~~~~--~l~~~~~dg~i~iw~~~~~~-~~~~~~~--~h~~~v~~l~~s~~~~-l~s 600 (615)
T 1pgu_A 527 WAFRTSKINAISWKPAEKGANEEEIEED--LVATGSLDTNIFIYSVKRPM-KIIKALN--AHKDGVNNLLWETPST-LVS 600 (615)
T ss_dssp SCCCSSCEEEEEECCCC------CCSCC--EEEEEETTSCEEEEESSCTT-CCEEETT--SSTTCEEEEEEEETTE-EEE
T ss_pred ecCCCCceeEEEEcCccccccccccCCC--EEEEEcCCCcEEEEECCCCc-eechhhh--cCccceEEEEEcCCCC-eEE
Confidence 66 889999999999 886 99999999999999999873 3445555 8889999999999999 999
Q ss_pred eecCCeEEEEecCCC
Q 017553 355 CCEDGAIWRWDAIPT 369 (369)
Q Consensus 355 ~~~dg~i~vw~~~~~ 369 (369)
++.||.|++|+++++
T Consensus 601 ~~~d~~v~iw~~~~~ 615 (615)
T 1pgu_A 601 SGADACIKRWNVVLE 615 (615)
T ss_dssp EETTSCEEEEEEC--
T ss_pred ecCCceEEEEeeecC
Confidence 999999999999864
No 69
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3e-39 Score=267.66 Aligned_cols=266 Identities=20% Similarity=0.318 Sum_probs=222.9
Q ss_pred ccccccccccccccccccceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCc
Q 017553 4 TAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDK 82 (369)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~ 82 (369)
+++++.+....+.. ....+....+.+|...|.+++|+| ++++|++++.|+ |++||+.+++.+..+. .|
T Consensus 38 l~s~~~dg~i~iw~--~~~~~~~~~~~~h~~~v~~~~~~~----~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-----~~ 106 (312)
T 4ery_A 38 LASSSADKLIKIWG--AYDGKFEKTISGHKLGISDVAWSS----DSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GH 106 (312)
T ss_dssp EEEEETTSCEEEEE--TTTCCEEEEECCCSSCEEEEEECT----TSSEEEEEETTSEEEEEETTTCCEEEEEE-----CC
T ss_pred EEEeeCCCeEEEEe--CCCcccchhhccCCCceEEEEEcC----CCCEEEEECCCCEEEEEECCCCcEEEEEc-----CC
Confidence 44555555444433 334455667889999999999999 689999999998 9999999998888777 47
Q ss_pred ccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCc
Q 017553 83 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI 162 (369)
Q Consensus 83 ~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 162 (369)
...|.+++|+ |++. +|++|+.||.|++||+.+++.+..+..|..+|.+++|+| ++.+|++++.||.|++||+++++
T Consensus 107 ~~~v~~~~~~--~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~ 182 (312)
T 4ery_A 107 SNYVFCCNFN--PQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQ 182 (312)
T ss_dssp SSCEEEEEEC--SSSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCC
T ss_pred CCCEEEEEEc--CCCC-EEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCc
Confidence 7889999888 8898 999999999999999999999999999999999999999 88999999999999999999998
Q ss_pred EEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCc
Q 017553 163 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY 242 (369)
Q Consensus 163 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (369)
.+..+.. .+...+..++|+| ++.+|++++.|+.|++||+++++ .+..+..|...
T Consensus 183 ~~~~~~~--~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~-----------------------~~~~~~~~~~~ 236 (312)
T 4ery_A 183 CLKTLID--DDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGK-----------------------CLKTYTGHKNE 236 (312)
T ss_dssp EEEEECC--SSCCCEEEEEECT-TSSEEEEEETTTEEEEEETTTTE-----------------------EEEEECSSCCS
T ss_pred eeeEEec--cCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCc-----------------------EEEEEEecCCc
Confidence 8877653 4677899999999 88999999999999999999843 33444555544
Q ss_pred eeee--ee---eCcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEec--CCCeE
Q 017553 243 VDCN--RW---LGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN--REGKI 315 (369)
Q Consensus 243 v~~~--~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~--~dg~i 315 (369)
..++ .+ ++.++++++.|+.|++||+.+.+ .+..+..|...|.+++|+|+++ ++++++ .|+.|
T Consensus 237 ~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~---------~~~~~~~h~~~v~~~~~~p~~~--~l~s~~~~~d~~i 305 (312)
T 4ery_A 237 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE---------IVQKLQGHTDVVISTACHPTEN--IIASAALENDKTI 305 (312)
T ss_dssp SSCCCEEEECSSSCEEEECCTTSCEEEEETTTCC---------EEEEECCCSSCEEEEEECSSSS--EEEEEECTTTCCE
T ss_pred eEEEEEEEEeCCCcEEEEECCCCEEEEEECCCch---------hhhhhhccCCcEEEEeecCcCC--ceEEEEccCCccE
Confidence 3332 22 27799999999999999998876 6788889999999999999996 777775 69999
Q ss_pred EEEEcc
Q 017553 316 FVWELQ 321 (369)
Q Consensus 316 ~i~d~~ 321 (369)
++|+..
T Consensus 306 ~~W~~d 311 (312)
T 4ery_A 306 KLWKSD 311 (312)
T ss_dssp EEEECC
T ss_pred EEecCC
Confidence 999864
No 70
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=8.3e-40 Score=317.99 Aligned_cols=322 Identities=20% Similarity=0.299 Sum_probs=258.0
Q ss_pred ccccccccccccccccccceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCc
Q 017553 4 TAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDK 82 (369)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~ 82 (369)
+|+++.+....+ ++....+....+.+|.+.|.+++|+| ++++||+++.|+ |+|||+.+++.+..+. .|
T Consensus 630 l~s~~~d~~i~v--w~~~~~~~~~~~~~h~~~v~~~~~s~----~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-----~~ 698 (1249)
T 3sfz_A 630 IASCGADKTLQV--FKAETGEKLLDIKAHEDEVLCCAFSS----DDSYIATCSADKKVKIWDSATGKLVHTYD-----EH 698 (1249)
T ss_dssp EEEEETTSCEEE--EETTTCCEEEEECCCSSCEEEEEECT----TSSEEEEEETTSEEEEEETTTCCEEEEEE-----CC
T ss_pred EEEEeCCCeEEE--EECCCCCEEEEeccCCCCEEEEEEec----CCCEEEEEeCCCeEEEEECCCCceEEEEc-----CC
Confidence 344554444333 33455567778899999999999999 689999999988 9999999999888877 57
Q ss_pred ccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCc
Q 017553 83 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI 162 (369)
Q Consensus 83 ~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 162 (369)
...|.+++|++..++. ++++|+.||.|++||+.+++.+..+.+|.+.|.+++|+| ++.+|++++.||.|++||+.+++
T Consensus 699 ~~~v~~~~~~~~~~~~-~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp-~~~~l~s~s~dg~v~vwd~~~~~ 776 (1249)
T 3sfz_A 699 SEQVNCCHFTNKSNHL-LLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWDVRSAN 776 (1249)
T ss_dssp SSCEEEEEECSSSSCC-EEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECS-STTEEEEEESSSEEEEEEGGGTE
T ss_pred CCcEEEEEEecCCCce-EEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEec-CCCEEEEEECCCeEEEEeCCCCc
Confidence 8899999998443565 899999999999999999999999999999999999999 89999999999999999998876
Q ss_pred EEEEeecc----------------------------------------------------CCCCCcEEEEEecCCCceEE
Q 017553 163 CILIFAGA----------------------------------------------------GGHRNEVLSVDFHPSDIYRI 190 (369)
Q Consensus 163 ~~~~~~~~----------------------------------------------------~~~~~~v~~~~~~~~~~~~l 190 (369)
....+... .+|...|.+++|+| ++.++
T Consensus 777 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l 855 (1249)
T 3sfz_A 777 ERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSP-YDHLA 855 (1249)
T ss_dssp EEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECS-STTEE
T ss_pred ccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcC-CCCEE
Confidence 65544310 15667777888888 77778
Q ss_pred EEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEEEecCC
Q 017553 191 ASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPK 268 (369)
Q Consensus 191 ~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~ 268 (369)
++++.|+.|++||+.+ ...+..+..|...|.+++|+ ++++++++.|+.|++|++.
T Consensus 856 ~~~~~dg~v~vwd~~~-----------------------~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~ 912 (1249)
T 3sfz_A 856 VIALSQYCVELWNIDS-----------------------RLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK 912 (1249)
T ss_dssp EEECSSSCEEEEETTT-----------------------TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHH
T ss_pred EEEeCCCeEEEEEcCC-----------------------CceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEcc
Confidence 8888888888888877 33456778899999999998 7799999999999999976
Q ss_pred CCCCCCCCCccce--------------------e--------eeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEc
Q 017553 269 MKEQSPGEGTADI--------------------L--------QKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL 320 (369)
Q Consensus 269 ~~~~~~~~~~~~~--------------------~--------~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~ 320 (369)
............. + .....+...+.+++|+|+++ ++++|+.+|.|++||+
T Consensus 913 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~--~l~~g~~~g~i~i~d~ 990 (1249)
T 3sfz_A 913 KVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLE--YVAFGDEDGAIKIIEL 990 (1249)
T ss_dssp HHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSS--EEEEEETTSCCEEEET
T ss_pred ccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCC--EEEEEcCCCCEEEEEc
Confidence 5322111000000 0 00011245789999999996 9999999999999999
Q ss_pred cCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 321 QSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
.+++ ....+. +|...|++++|+|+|++|++++.||.|++||+.+
T Consensus 991 ~~~~--~~~~~~--~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~ 1034 (1249)
T 3sfz_A 991 PNNR--VFSSGV--GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT 1034 (1249)
T ss_dssp TTTS--CEEECC--CCSSCCCCEEECSSSSCEEEECSSSBEEEEETTT
T ss_pred CCCc--eeeecc--cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence 9884 444555 8889999999999999999999999999999865
No 71
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=6.6e-39 Score=311.68 Aligned_cols=300 Identities=20% Similarity=0.330 Sum_probs=251.2
Q ss_pred eeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEe
Q 017553 26 TNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG 104 (369)
Q Consensus 26 ~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~ 104 (369)
...+.+|.+.|++++|+| +++++|+++.|+ |++||+.+++.+..+. .|...|.+++|+ |+|+ +|+++
T Consensus 608 ~~~~~~h~~~v~~~~~s~----~~~~l~s~~~d~~i~vw~~~~~~~~~~~~-----~h~~~v~~~~~s--~~~~-~l~s~ 675 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQ----DGQRIASCGADKTLQVFKAETGEKLLDIK-----AHEDEVLCCAFS--SDDS-YIATC 675 (1249)
T ss_dssp SEEECCCSSCEEEEEECT----TSSEEEEEETTSCEEEEETTTCCEEEEEC-----CCSSCEEEEEEC--TTSS-EEEEE
T ss_pred eEEEecccccEEEEEECC----CCCEEEEEeCCCeEEEEECCCCCEEEEec-----cCCCCEEEEEEe--cCCC-EEEEE
Confidence 345679999999999999 689999999998 9999999999888776 578899999998 9998 99999
Q ss_pred ecCCeEEEEEcCCccccceeeccccceEEEEecCC-CCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEec
Q 017553 105 GINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPL-KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFH 183 (369)
Q Consensus 105 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 183 (369)
+.||.|++||+.+++.+..+.+|...|.+++|+|. +..++++|+.|+.|++||+++++++..+. +|...|.+++|+
T Consensus 676 ~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~---~h~~~v~~~~~s 752 (1249)
T 3sfz_A 676 SADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMF---GHTNSVNHCRFS 752 (1249)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEEC---CCSSCEEEEEEC
T ss_pred eCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheec---CCCCCEEEEEEe
Confidence 99999999999999999999999999999999994 34488999999999999999999998888 799999999999
Q ss_pred CCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCe
Q 017553 184 PSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNE 261 (369)
Q Consensus 184 ~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~ 261 (369)
| ++.++++++.||.|++||++++............ .........+...+.+++|+ ++.+++++ ++.
T Consensus 753 p-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~ 820 (1249)
T 3sfz_A 753 P-DDELLASCSADGTLRLWDVRSANERKSINVKRFF----------LSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNK 820 (1249)
T ss_dssp S-STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC------------------CCCCCBCCCCBCTTSSEEEEEE-TTE
T ss_pred c-CCCEEEEEECCCeEEEEeCCCCcccceecccccc----------cccCCccccccceEEEEEECCCCCEEEEEc-CCc
Confidence 9 8899999999999999999985433222111000 00001112234567888887 66777765 789
Q ss_pred EEEecCCCCCCCCCCCccceeeec-cCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccce
Q 017553 262 IVLWEPKMKEQSPGEGTADILQKY-PVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPI 340 (369)
Q Consensus 262 i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v 340 (369)
+.+||+.+.. .+..+ ..+...+.+++|+|+++ ++++++.||.|++||+.++ .....+. +|...|
T Consensus 821 v~~~d~~~~~---------~~~~~~~~~~~~v~~~~~sp~~~--~l~~~~~dg~v~vwd~~~~--~~~~~~~--~h~~~v 885 (1249)
T 3sfz_A 821 VLLFDIHTSG---------LLAEIHTGHHSTIQYCDFSPYDH--LAVIALSQYCVELWNIDSR--LKVADCR--GHLSWV 885 (1249)
T ss_dssp EEEEETTTCC---------EEEEEECSSSSCCCEEEECSSTT--EEEEECSSSCEEEEETTTT--EEEEEEC--CCSSCE
T ss_pred EEEEEecCCC---------ceeEEcCCCCCceEEEEEcCCCC--EEEEEeCCCeEEEEEcCCC--ceeeecC--CCccce
Confidence 9999998876 33333 36788999999999996 8999999999999999987 4556666 888999
Q ss_pred EEEEecCCCCEEEEeecCCeEEEEecC
Q 017553 341 RQTAMSYDGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 341 ~~~~~s~~~~~l~s~~~dg~i~vw~~~ 367 (369)
.+++|+|++++|++++.||.|++|++.
T Consensus 886 ~~v~~spdg~~l~s~s~dg~v~vw~~~ 912 (1249)
T 3sfz_A 886 HGVMFSPDGSSFLTASDDQTIRVWETK 912 (1249)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEEHH
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEEcc
Confidence 999999999999999999999999964
No 72
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=5.2e-39 Score=274.45 Aligned_cols=255 Identities=21% Similarity=0.337 Sum_probs=210.5
Q ss_pred CeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEE
Q 017553 35 PLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVI 113 (369)
Q Consensus 35 ~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vw 113 (369)
.|++++|+| ++++||+++.|+ |+|||+.+++.+..+. .|...|.+++|+ |++. +|++++.|++|++|
T Consensus 125 ~v~~v~~s~----dg~~l~s~~~d~~i~iwd~~~~~~~~~~~-----~h~~~v~~~~~~--p~~~-~l~s~s~d~~v~iw 192 (393)
T 1erj_A 125 YIRSVCFSP----DGKFLATGAEDRLIRIWDIENRKIVMILQ-----GHEQDIYSLDYF--PSGD-KLVSGSGDRTVRIW 192 (393)
T ss_dssp BEEEEEECT----TSSEEEEEETTSCEEEEETTTTEEEEEEC-----CCSSCEEEEEEC--TTSS-EEEEEETTSEEEEE
T ss_pred eEEEEEECC----CCCEEEEEcCCCeEEEEECCCCcEEEEEc-----cCCCCEEEEEEc--CCCC-EEEEecCCCcEEEE
Confidence 499999999 689999999999 9999999888777776 578899999998 9998 99999999999999
Q ss_pred EcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeec----cCCCCCcEEEEEecCCCceE
Q 017553 114 DVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAG----AGGHRNEVLSVDFHPSDIYR 189 (369)
Q Consensus 114 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~ 189 (369)
|+.+++....+. +...+.+++|+|.++.+|++|+.|+.|++||+++++.+..+.. ..+|...|.+++|+| ++.+
T Consensus 193 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~g~~ 270 (393)
T 1erj_A 193 DLRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQS 270 (393)
T ss_dssp ETTTTEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT-TSSE
T ss_pred ECCCCeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECC-CCCE
Confidence 999998877776 5678999999997889999999999999999999988777631 126999999999999 8899
Q ss_pred EEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEEEecC
Q 017553 190 IASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEP 267 (369)
Q Consensus 190 l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~ 267 (369)
|++++.|+.|++||++......... ..........+.+|...|.+++|+ +.+|++++.|+.|++||+
T Consensus 271 l~s~s~d~~v~~wd~~~~~~~~~~~-----------~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~ 339 (393)
T 1erj_A 271 VVSGSLDRSVKLWNLQNANNKSDSK-----------TPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDK 339 (393)
T ss_dssp EEEEETTSEEEEEEC--------------------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEET
T ss_pred EEEEeCCCEEEEEECCCCCCccccc-----------CCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 9999999999999998743211100 001122345667899999999997 779999999999999999
Q ss_pred CCCCCCCCCCccceeeeccCCCCCeeEEEEeecC----CccEEEEecCCCeEEEEEccCC
Q 017553 268 KMKEQSPGEGTADILQKYPVPECDIWFIKFSCDF----HYNAAAIGNREGKIFVWELQSS 323 (369)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~----~~~~l~~~~~dg~i~i~d~~~~ 323 (369)
++++ .+..+..|...|.+++|+++. ...+|++|+.||.|++|++...
T Consensus 340 ~~~~---------~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 340 KSGN---------PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp TTCC---------EEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred CCCe---------EEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 9876 677888899999999998742 1258999999999999998764
No 73
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=4.2e-39 Score=270.38 Aligned_cols=285 Identities=12% Similarity=0.072 Sum_probs=228.0
Q ss_pred eeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEe
Q 017553 26 TNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG 104 (369)
Q Consensus 26 ~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~ 104 (369)
.....+|.+.|++++|+| ++++|++++.|+ |++|++.++.......... .|...|.+++|+ |+++.+|++|
T Consensus 4 ~~~~~~h~~~v~~~~~s~----~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~--~~~~~v~~~~~~--~~~~~~l~~~ 75 (342)
T 1yfq_A 4 VQIEQAPKDYISDIKIIP----SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL--RYKHPLLCCNFI--DNTDLQIYVG 75 (342)
T ss_dssp EECSSCCSSCEEEEEEEG----GGTEEEEEETTSEEEEEEEETTTTEEEEEEEE--ECSSCEEEEEEE--ESSSEEEEEE
T ss_pred eecccCCCCcEEEEEEcC----CCCEEEEEcCCCeEEEEEeCCCCccccceeee--ecCCceEEEEEC--CCCCcEEEEE
Confidence 344568999999999999 689999999888 9999998877222222111 478899999998 7764368999
Q ss_pred ecCCeEEEEEc-CCccccceeec--cccceEEEEecCCCCceEEEEeCCCcEEEEEccC---------CcEEEEeeccCC
Q 017553 105 GINGIIRVIDV-SNEKLHKSFVG--HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT---------GICILIFAGAGG 172 (369)
Q Consensus 105 ~~dg~i~vwd~-~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~---------~~~~~~~~~~~~ 172 (369)
+.||.|++||+ .+++. ..+.+ |...|.+++|+| +.+|++++.|+.|++||+++ ++++..+.
T Consensus 76 ~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---- 148 (342)
T 1yfq_A 76 TVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK---- 148 (342)
T ss_dssp ETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS----
T ss_pred cCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe----
Confidence 99999999999 76654 67778 999999999999 78999999999999999987 66555553
Q ss_pred CCCcEEEEEecCCCceEEEEEeeCCcEEEEEccC-ceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--
Q 017553 173 HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE-FWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-- 249 (369)
Q Consensus 173 ~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-- 249 (369)
|...|.+++|+| ++ +++++.|+.|++||++. +.. ........|...+.+++|+
T Consensus 149 ~~~~v~~~~~~~-~~--l~~~~~d~~i~i~d~~~~~~~---------------------~~~~~~~~~~~~i~~i~~~~~ 204 (342)
T 1yfq_A 149 VKNKIFTMDTNS-SR--LIVGMNNSQVQWFRLPLCEDD---------------------NGTIEESGLKYQIRDVALLPK 204 (342)
T ss_dssp SCCCEEEEEECS-SE--EEEEESTTEEEEEESSCCTTC---------------------CCEEEECSCSSCEEEEEECSG
T ss_pred eCCceEEEEecC-Cc--EEEEeCCCeEEEEECCccccc---------------------cceeeecCCCCceeEEEECCC
Confidence 889999999998 54 99999999999999987 321 1122344677889999996
Q ss_pred -CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCC---------CCeeEEEEeecCCccEEEEecCCCeEEEEE
Q 017553 250 -GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPE---------CDIWFIKFSCDFHYNAAAIGNREGKIFVWE 319 (369)
Q Consensus 250 -~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~---------~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d 319 (369)
++++++++.||.|++|+++...... .......+..+. ..|.+++|+|+++ +|++++.||.|++||
T Consensus 205 ~~~~l~~~~~dg~i~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~--~l~~~~~dg~i~vwd 279 (342)
T 1yfq_A 205 EQEGYACSSIDGRVAVEFFDDQGDDY---NSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK--FLYTAGSDGIISCWN 279 (342)
T ss_dssp GGCEEEEEETTSEEEEEECCTTCCST---TCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC--CEEEEETTSCEEEEE
T ss_pred CCCEEEEEecCCcEEEEEEcCCCccc---ccccceeeecccccccccccceeEEEEEEcCCCC--EEEEecCCceEEEEc
Confidence 4799999999999999998761000 001344444443 3899999999986 899999999999999
Q ss_pred ccCCCceeEEEeecCCC-ccceEEEEecCCCCEEEEeecCCe
Q 017553 320 LQSSPPVLIARLSHAQS-KSPIRQTAMSYDGSTILSCCEDGA 360 (369)
Q Consensus 320 ~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~dg~ 360 (369)
+.++ ..+..+. +| ...|.+++ |++++|++++.||.
T Consensus 280 ~~~~--~~~~~~~--~~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 280 LQTR--KKIKNFA--KFNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp TTTT--EEEEECC--CCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred CccH--hHhhhhh--cccCCCceEec--CCCCeEEEEecCCc
Confidence 9988 4555665 66 89999999 99999999999998
No 74
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=8e-39 Score=268.42 Aligned_cols=277 Identities=12% Similarity=0.134 Sum_probs=210.8
Q ss_pred cccccccccccccccccc-----ceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeee
Q 017553 4 TAIGCEPLVGSLTPSKKR-----EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSY 77 (369)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~ 77 (369)
+++|+.+....+...... ...+...+.+|...|++++|+| ++.++++++.|+ |++||+.+++.+..+.
T Consensus 42 l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~----~~~~l~s~s~D~~v~lwd~~~~~~~~~~~-- 115 (343)
T 2xzm_R 42 LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQ----ENCFAISSSWDKTLRLWDLRTGTTYKRFV-- 115 (343)
T ss_dssp EEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECS----STTEEEEEETTSEEEEEETTSSCEEEEEE--
T ss_pred EEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECC----CCCEEEEEcCCCcEEEEECCCCcEEEEEc--
Confidence 455555554444432211 1245567889999999999999 689999999999 9999999998887776
Q ss_pred ccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCcccc--ceeeccccceEEEEecCCCC----------ceEE
Q 017553 78 VDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLH--KSFVGHGDSINEIRTQPLKP----------SLVV 145 (369)
Q Consensus 78 ~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~----------~~l~ 145 (369)
.|...|.+++|+ |+++ +|++++.|+.|++||+...... ....+|...|.+++|+| ++ .+|+
T Consensus 116 ---~h~~~v~~v~~s--p~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~l~ 188 (343)
T 2xzm_R 116 ---GHQSEVYSVAFS--PDNR-QILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSP-IMKSANKVQPFAPYFA 188 (343)
T ss_dssp ---CCCSCEEEEEEC--SSTT-EEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECC-CCCSCSCCCSSCCEEE
T ss_pred ---CCCCcEEEEEEC--CCCC-EEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecc-ccccccccCCCCCEEE
Confidence 578899999998 9998 9999999999999998743222 12236889999999999 54 6899
Q ss_pred EEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCC
Q 017553 146 SASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFP 225 (369)
Q Consensus 146 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~ 225 (369)
+++.|+.|++||. .++....+. +|...|.+++|+| ++++|++|+.|+.|++||++...
T Consensus 189 s~~~d~~i~iwd~-~~~~~~~~~---~h~~~v~~~~~s~-~g~~l~sgs~dg~v~iwd~~~~~----------------- 246 (343)
T 2xzm_R 189 SVGWDGRLKVWNT-NFQIRYTFK---AHESNVNHLSISP-NGKYIATGGKDKKLLIWDILNLT----------------- 246 (343)
T ss_dssp EEETTSEEEEEET-TTEEEEEEE---CCSSCEEEEEECT-TSSEEEEEETTCEEEEEESSCCS-----------------
T ss_pred EEcCCCEEEEEcC-CCceeEEEc---CccccceEEEECC-CCCEEEEEcCCCeEEEEECCCCc-----------------
Confidence 9999999999994 566666676 7999999999999 89999999999999999996521
Q ss_pred CceeecceeeeccCCCceeeeeee-CcEEEEeecCCeEEEecCCCCCCCC--CCC--ccceeeeccCCCCCeeEEEEeec
Q 017553 226 TKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSP--GEG--TADILQKYPVPECDIWFIKFSCD 300 (369)
Q Consensus 226 ~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~--~~~--~~~~~~~~~~~~~~i~~~~~s~~ 300 (369)
.+...+ .+...|.+++|+ ...+++++.|+.|++||+.+.+... ... ..........|...+.+++|+|+
T Consensus 247 -----~~~~~~-~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 320 (343)
T 2xzm_R 247 -----YPQREF-DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNAL 320 (343)
T ss_dssp -----SCSEEE-ECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSS
T ss_pred -----ccceee-cCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCC
Confidence 111111 244569999998 3344556778899999998765322 000 00011112356678999999999
Q ss_pred CCccEEEEecCCCeEEEEEccCC
Q 017553 301 FHYNAAAIGNREGKIFVWELQSS 323 (369)
Q Consensus 301 ~~~~~l~~~~~dg~i~i~d~~~~ 323 (369)
++ +|++|+.||.|++|++.++
T Consensus 321 g~--~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 321 GK--KLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp SC--CEEEEETTSEEEEEEEEEE
T ss_pred CC--eEEEecCCceEEEEEEEcc
Confidence 97 8999999999999998764
No 75
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=4.6e-39 Score=270.70 Aligned_cols=295 Identities=14% Similarity=0.189 Sum_probs=213.7
Q ss_pred eecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCce----eEEEeeeccCCcccceeEEEeeecCCCccEE
Q 017553 27 NKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGV----IAALQSYVDEDKEESFYTVSWACNVDGIPFL 101 (369)
Q Consensus 27 ~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l 101 (369)
..+.+|.+.|++++|+| ++++||+++.|+ |++||+.++.. ...+. .|...|.+++|++..++. +|
T Consensus 5 ~~~~gH~~~v~~~~~~~----~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~d~~-~l 74 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDF----YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWR-----AHDSSIVAIDWASPEYGR-II 74 (351)
T ss_dssp CEECCCSSCEEEEEECS----SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEE-----CCSSCEEEEEECCGGGCS-EE
T ss_pred ccCcccccceeEEEEcC----CCCEEEEeeCCCeEEEEECCCCCCcceecceec-----cCCCcEEEEEEcCCCCCC-EE
Confidence 44689999999999999 689999999998 99999987643 23333 588899999998322577 99
Q ss_pred EEeecCCeEEEEEcCCc---------cccceeeccccceEEEEecCCC--CceEEEEeCCCcEEEEEccCCcEEEEee--
Q 017553 102 VAGGINGIIRVIDVSNE---------KLHKSFVGHGDSINEIRTQPLK--PSLVVSASKDESVRLWNVQTGICILIFA-- 168 (369)
Q Consensus 102 ~~~~~dg~i~vwd~~~~---------~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~-- 168 (369)
++|+.||.|++||+.++ +.+..+..|...|.+++|+| + +.+|++++.||.|++||+++++.+..+.
T Consensus 75 ~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 153 (351)
T 3f3f_A 75 ASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAP-AHLGLKLACLGNDGILRLYDALEPSDLRSWTLT 153 (351)
T ss_dssp EEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTCEEEEEECSSTTCTTCCEEE
T ss_pred EEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcC-CCCCcEEEEecCCCcEEEecCCChHHhcccccc
Confidence 99999999999999876 45677888999999999999 7 8899999999999999998876543322
Q ss_pred --------ccCCCCCcEEEEEecCC--CceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeecc
Q 017553 169 --------GAGGHRNEVLSVDFHPS--DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV 238 (369)
Q Consensus 169 --------~~~~~~~~v~~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (369)
....|...+.+++|+|. ++.++++++.|+.+.+|+...+. ...+..+..
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~ 212 (351)
T 3f3f_A 154 SEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGK---------------------LHVAAKLPG 212 (351)
T ss_dssp EEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSC---------------------EEEEEECCC
T ss_pred ccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCc---------------------eeeeeecCC
Confidence 11257889999999993 38899999999999887776632 123556778
Q ss_pred CCCceeeeeee--C----cEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEe---
Q 017553 239 HSNYVDCNRWL--G----DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG--- 309 (369)
Q Consensus 239 ~~~~v~~~~~~--~----~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~--- 309 (369)
|...|.+++|+ + ++|++++.|+.|++||++...... ..............++... .+..+
T Consensus 213 h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---------~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 281 (351)
T 3f3f_A 213 HKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPL---------ASEESLTNSNMFDNSADVD--MDAQGRSD 281 (351)
T ss_dssp CCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-----------------------------------------
T ss_pred CCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCcc---------ccCCcccceeccCCCcccc--cccccccc
Confidence 99999999998 4 689999999999999998764311 1111112222223333321 22222
Q ss_pred -cCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 310 -NREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 310 -~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
.....+.+|+.... ..+..+. +|...|++++|+|++++|++++.||.|++|++.+
T Consensus 282 ~~~~~~~~~~~~~~~--~~~~~~~--~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 337 (351)
T 3f3f_A 282 SNTEEKAELQSNLQV--ELLSEHD--DHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATY 337 (351)
T ss_dssp ---------CCSEEE--EEEEEEC--TTSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred cccceeeeecccccc--cEEEEEe--cccccEEEEEEcCCCCEEEEecCCCcEEEEecCc
Confidence 23344455544443 3445555 8889999999999999999999999999999875
No 76
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.2e-39 Score=273.11 Aligned_cols=251 Identities=18% Similarity=0.217 Sum_probs=214.2
Q ss_pred CcccceeEEEeeecCCCccEEEEeecCCeEEEEEcC--CccccceeeccccceEEEEecCCC--CceEEEEeCCCcEEEE
Q 017553 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVS--NEKLHKSFVGHGDSINEIRTQPLK--PSLVVSASKDESVRLW 156 (369)
Q Consensus 81 ~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~--~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~dg~i~vw 156 (369)
.|...|.+++|+ |+++ +|++|+.||.|++||+. +++.+..+.+|...|.+++|+| + +.+|++++.||.|++|
T Consensus 9 ~h~~~v~~~~~s--~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~~~dg~v~iw 84 (379)
T 3jrp_A 9 AHNELIHDAVLD--YYGK-RLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKVLIW 84 (379)
T ss_dssp ECCCCEEEEEEC--SSSS-EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSCEEEE
T ss_pred CCcccEEEEEEc--CCCC-EEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCC-CCCCCEEEEeccCCEEEEE
Confidence 588899999998 9998 99999999999999998 6677888999999999999997 5 8999999999999999
Q ss_pred EccCCc--EEEEeeccCCCCCcEEEEEecCCC--ceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecc
Q 017553 157 NVQTGI--CILIFAGAGGHRNEVLSVDFHPSD--IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP 232 (369)
Q Consensus 157 d~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (369)
|+.+++ .+..+. .|...|.+++|+| + +.+|++++.|+.|++||++.... ..
T Consensus 85 d~~~~~~~~~~~~~---~~~~~v~~~~~~~-~~~~~~l~~~~~d~~i~v~d~~~~~~---------------------~~ 139 (379)
T 3jrp_A 85 KEENGRWSQIAVHA---VHSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGT---------------------TS 139 (379)
T ss_dssp EEETTEEEEEEEEC---CCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEECCTTSC---------------------CC
T ss_pred EcCCCceeEeeeec---CCCcceEEEEeCC-CCCCCEEEEecCCCcEEEEecCCCCc---------------------ee
Confidence 999987 555555 6999999999999 6 88999999999999999988321 22
Q ss_pred eeeeccCCCceeeeeee---------------CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEE
Q 017553 233 VFIASVHSNYVDCNRWL---------------GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKF 297 (369)
Q Consensus 233 ~~~~~~~~~~v~~~~~~---------------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 297 (369)
...+..|...|.++.|+ +.++++++.|+.|++||+++... .......+..|...|.+++|
T Consensus 140 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~h~~~v~~~~~ 214 (379)
T 3jrp_A 140 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ-----TYVLESTLEGHSDWVRDVAW 214 (379)
T ss_dssp EEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTT-----EEEEEEEECCCSSCEEEEEE
T ss_pred eEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCc-----ceeeEEEEecccCcEeEEEE
Confidence 34556789999999996 46899999999999999987642 22345677788899999999
Q ss_pred eec---CCccEEEEecCCCeEEEEEccCCCceeEE-EeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecC
Q 017553 298 SCD---FHYNAAAIGNREGKIFVWELQSSPPVLIA-RLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 298 s~~---~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 367 (369)
+|+ + .+|++++.||.|++||+.++...... .+....|...|++++|+|++++|++++.||.|++|++.
T Consensus 215 sp~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 215 SPTVLLR--SYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp CCCCSSS--EEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred CCCCCCC--CeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 999 5 49999999999999999987533332 23334578899999999999999999999999999986
No 77
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=3.6e-39 Score=276.69 Aligned_cols=288 Identities=16% Similarity=0.218 Sum_probs=225.1
Q ss_pred CcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCcee-EEEeeeccCCcccceeEEEeeecC-CCccEEEEeecCCe
Q 017553 33 KRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVI-AALQSYVDEDKEESFYTVSWACNV-DGIPFLVAGGINGI 109 (369)
Q Consensus 33 ~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~g~~~l~~~~~dg~ 109 (369)
......++++|. ...++++++.++ |+||++.+.... ..+.. ...|...|.+++|+ | ++. +|++|+.||.
T Consensus 34 ~~~~~~~~~~~~---~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~--~~~h~~~V~~~~~~--p~~~~-~l~s~s~dg~ 105 (402)
T 2aq5_A 34 TWDSGFCAVNPK---FMALICEASGGGAFLVLPLGKTGRVDKNVPL--VCGHTAPVLDIAWC--PHNDN-VIASGSEDCT 105 (402)
T ss_dssp CCSSCSEEECSS---EEEEEBCCSSSCCEEEEETTCCEECCTTCCC--BCCCSSCEEEEEEC--TTCTT-EEEEEETTSE
T ss_pred ccCCCcEEECCC---eEEEEEEEcCCCEEEEEECccCCCCCCCCce--EecCCCCEEEEEeC--CCCCC-EEEEEeCCCe
Confidence 344567888883 234455567777 999998654332 11111 12588999999998 8 677 9999999999
Q ss_pred EEEEEcCCc-------cccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEe--eccCCCCCcEEEE
Q 017553 110 IRVIDVSNE-------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIF--AGAGGHRNEVLSV 180 (369)
Q Consensus 110 i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~--~~~~~~~~~v~~~ 180 (369)
|++||+.++ +.+..+.+|...|.+++|+|++..+|++++.|+.|++||+++++.+..+ . +|...|.++
T Consensus 106 v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~v~~~ 182 (402)
T 2aq5_A 106 VMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPD---VHPDTIYSV 182 (402)
T ss_dssp EEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTT---TCCSCEEEE
T ss_pred EEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecC---CCCCceEEE
Confidence 999999887 5678888999999999999943479999999999999999999998888 5 699999999
Q ss_pred EecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeee-ccCCCc-eeeeeee--CcEEEEe
Q 017553 181 DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA-SVHSNY-VDCNRWL--GDFILSK 256 (369)
Q Consensus 181 ~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-v~~~~~~--~~~l~~~ 256 (369)
+|+| ++.+|++++.|+.|++||++++. .+..+ ..|... +.++.|+ +.+++++
T Consensus 183 ~~~~-~~~~l~~~~~d~~i~iwd~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 238 (402)
T 2aq5_A 183 DWSR-DGALICTSCRDKRVRVIEPRKGT-----------------------VVAEKDRPHEGTRPVHAVFVSEGKILTTG 238 (402)
T ss_dssp EECT-TSSCEEEEETTSEEEEEETTTTE-----------------------EEEEEECSSCSSSCCEEEECSTTEEEEEE
T ss_pred EECC-CCCEEEEEecCCcEEEEeCCCCc-----------------------eeeeeccCCCCCcceEEEEcCCCcEEEEe
Confidence 9999 88999999999999999999832 34444 566665 7888887 6688888
Q ss_pred ---ecCCeEEEecCCCCCCCCCCCccceeeec-cCCCCCeeEEEEeecCCccEE-EEecCCCeEEEEEccCCCceeEEEe
Q 017553 257 ---SVDNEIVLWEPKMKEQSPGEGTADILQKY-PVPECDIWFIKFSCDFHYNAA-AIGNREGKIFVWELQSSPPVLIARL 331 (369)
Q Consensus 257 ---~~d~~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~ 331 (369)
+.|+.|++||+++.+. .+... ..+...+..++|+|+++ +| ++|+.||.|++||+.++++. +..+
T Consensus 239 ~~~~~d~~i~iwd~~~~~~--------~~~~~~~~~~~~v~~~~~s~~~~--~l~~~g~~dg~i~i~d~~~~~~~-~~~l 307 (402)
T 2aq5_A 239 FSRMSERQVALWDTKHLEE--------PLSLQELDTSSGVLLPFFDPDTN--IVYLCGKGDSSIRYFEITSEAPF-LHYL 307 (402)
T ss_dssp ECTTCCEEEEEEETTBCSS--------CSEEEECCCCSSCEEEEEETTTT--EEEEEETTCSCEEEEEECSSTTC-EEEE
T ss_pred ccCCCCceEEEEcCccccC--------CceEEeccCCCceeEEEEcCCCC--EEEEEEcCCCeEEEEEecCCCcc-eEee
Confidence 6899999999988653 12122 23456799999999997 55 56778999999999988631 2233
Q ss_pred ecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 332 SHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 332 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
....+...|.+++|+|++.++++ .++.+++|++.+
T Consensus 308 ~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~ 342 (402)
T 2aq5_A 308 SMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHE 342 (402)
T ss_dssp EEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEET
T ss_pred cccccCCcccceEEeccccccee--cceeEEEEEcCC
Confidence 31135689999999999998874 567999999864
No 78
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-38 Score=268.50 Aligned_cols=259 Identities=19% Similarity=0.299 Sum_probs=212.2
Q ss_pred eeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEec--CCceeEEEeeeccCCcccceeEEEeeecCCCccEE
Q 017553 25 VTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCL--EGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL 101 (369)
Q Consensus 25 ~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l 101 (369)
+...+++|.+.|++++|+| ++++||+++.|+ |+||++. ++.....+. .|...|.+++|+...++. +|
T Consensus 3 ~~~~~~~h~~~v~~~~~s~----~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~~-~l 72 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDY----YGKRLATCSSDKTIKIFEVEGETHKLIDTLT-----GHEGPVWRVDWAHPKFGT-IL 72 (379)
T ss_dssp --CCEEECCCCEEEEEECS----SSSEEEEEETTSCEEEEEEETTEEEEEEEEC-----CCSSCEEEEEECCGGGCS-EE
T ss_pred ccEEecCCcccEEEEEEcC----CCCEEEEEECCCcEEEEecCCCcceeeeEec-----CCCCcEEEEEeCCCCCCC-EE
Confidence 4556789999999999999 689999999888 9999987 334444444 588899999998443477 99
Q ss_pred EEeecCCeEEEEEcCCcc--ccceeeccccceEEEEecCCC--CceEEEEeCCCcEEEEEccCCc--EEEEeeccCCCCC
Q 017553 102 VAGGINGIIRVIDVSNEK--LHKSFVGHGDSINEIRTQPLK--PSLVVSASKDESVRLWNVQTGI--CILIFAGAGGHRN 175 (369)
Q Consensus 102 ~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~ 175 (369)
++|+.||.|++||+.+++ .+..+..|...|.+++|+| + +.+|++++.|+.|++||++++. ....+. .|..
T Consensus 73 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~---~~~~ 148 (379)
T 3jrp_A 73 ASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIID---AHAI 148 (379)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEECCTTSCCCEEEEE---CCTT
T ss_pred EEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCC-CCCCCEEEEecCCCcEEEEecCCCCceeeEEec---CCCC
Confidence 999999999999999886 6778888999999999999 6 8899999999999999998873 333444 6999
Q ss_pred cEEEEEecCC------------CceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCce
Q 017553 176 EVLSVDFHPS------------DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV 243 (369)
Q Consensus 176 ~v~~~~~~~~------------~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 243 (369)
.|.+++|+|. ++.++++++.|+.|++||++..... ......+..|...|
T Consensus 149 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------------------~~~~~~~~~h~~~v 209 (379)
T 3jrp_A 149 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT-------------------YVLESTLEGHSDWV 209 (379)
T ss_dssp CEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTE-------------------EEEEEEECCCSSCE
T ss_pred ceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcc-------------------eeeEEEEecccCcE
Confidence 9999999994 4889999999999999999873211 22345677899999
Q ss_pred eeeeee-----CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEE
Q 017553 244 DCNRWL-----GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW 318 (369)
Q Consensus 244 ~~~~~~-----~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~ 318 (369)
.+++|+ ++++++++.|+.|++||+++..... ...+.....+...+.+++|+|+++ +|++++.||.|++|
T Consensus 210 ~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~v~~~~~s~~g~--~l~~~~~dg~i~iw 283 (379)
T 3jrp_A 210 RDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPW----KKTLLKEEKFPDVLWRASWSLSGN--VLALSGGDNKVTLW 283 (379)
T ss_dssp EEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCC----EEEESSSSCCSSCEEEEEECSSSC--CEEEEESSSSEEEE
T ss_pred eEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccc----eeeeeccccCCCcEEEEEEcCCCC--EEEEecCCCcEEEE
Confidence 999997 4689999999999999998864211 112333344678899999999997 89999999999999
Q ss_pred EccC
Q 017553 319 ELQS 322 (369)
Q Consensus 319 d~~~ 322 (369)
++..
T Consensus 284 ~~~~ 287 (379)
T 3jrp_A 284 KENL 287 (379)
T ss_dssp EEEE
T ss_pred eCCC
Confidence 9873
No 79
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.7e-38 Score=286.12 Aligned_cols=282 Identities=16% Similarity=0.201 Sum_probs=240.9
Q ss_pred ccCCcCeEEEEEeeccCCCccEEEEecCCcEEEEEecCC----ceeEEEeeeccCCcccc-eeEEEeeecC--CCccEEE
Q 017553 30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEG----GVIAALQSYVDEDKEES-FYTVSWACNV--DGIPFLV 102 (369)
Q Consensus 30 ~~h~~~v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~----~~~~~~~~~~~~~~~~~-v~~~~~~~~~--~g~~~l~ 102 (369)
..|.+.|++++|+| ++++||+++++.|+||++.++ +....+. .|... |.+++|+ | +++ +|+
T Consensus 15 ~~~~~~v~~~~~sp----dg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~-----~h~~~~v~~~~~s--p~~~~~-~l~ 82 (615)
T 1pgu_A 15 STQRNFTTHLSYDP----TTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFT-----GHGSSVVTTVKFS--PIKGSQ-YLC 82 (615)
T ss_dssp CCCTTCCCCCEEET----TTTEEEEEETTEEEEEECCSSCCSSCSEEEEC-----TTTTSCEEEEEEC--SSTTCC-EEE
T ss_pred CCccCceeEEEECC----CCCEEEEecCCeEEEEECCCCCCccccceEEe-----cCCCceEEEEEEC--cCCCCC-EEE
Confidence 46889999999999 689999999666999999988 6776666 57888 9999998 8 898 999
Q ss_pred EeecCCeEEEEEcCCc--------cccceeeccccceEEEEecCCCCceEEEEeCC----CcEEEEEccCCcEEEEeecc
Q 017553 103 AGGINGIIRVIDVSNE--------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKD----ESVRLWNVQTGICILIFAGA 170 (369)
Q Consensus 103 ~~~~dg~i~vwd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~ 170 (369)
+|+.||.|++||+.++ +....+..|...|.+++|+| ++.+|++++.+ +.|++|| .++.+..+.
T Consensus 83 s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~-- 157 (615)
T 1pgu_A 83 SGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWD--SGNSLGEVS-- 157 (615)
T ss_dssp EEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETT--TCCEEEECC--
T ss_pred EecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeC-CCCEEEEeccCCCCccEEEEEE--CCCcceeee--
Confidence 9999999999999754 66778888999999999999 88999999987 6888888 567777777
Q ss_pred CCCCCcEEEEEecCCCce-EEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCC---ceeee
Q 017553 171 GGHRNEVLSVDFHPSDIY-RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN---YVDCN 246 (369)
Q Consensus 171 ~~~~~~v~~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~ 246 (369)
+|...|.+++|+| ++. ++++++.|+.|++||+++ ...+..+..|.. .|.++
T Consensus 158 -~~~~~v~~~~~~~-~~~~~l~~~~~d~~v~vwd~~~-----------------------~~~~~~~~~~~~~~~~v~~~ 212 (615)
T 1pgu_A 158 -GHSQRINACHLKQ-SRPMRSMTVGDDGSVVFYQGPP-----------------------FKFSASDRTHHKQGSFVRDV 212 (615)
T ss_dssp -SCSSCEEEEEECS-SSSCEEEEEETTTEEEEEETTT-----------------------BEEEEEECSSSCTTCCEEEE
T ss_pred -cCCccEEEEEECC-CCCcEEEEEeCCCcEEEEeCCC-----------------------cceeeeecccCCCCceEEEE
Confidence 7999999999999 554 899999999999999988 334566778888 99999
Q ss_pred eee---CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeec-c---CCCCCeeEEEEeecCCccEEEEecCCCeEEEEE
Q 017553 247 RWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY-P---VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE 319 (369)
Q Consensus 247 ~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~-~---~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d 319 (369)
+|+ ++++++++.|+.|++||+++++ .+..+ . .|...|.+++|+ +++ +|++++.||.|++||
T Consensus 213 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~---------~~~~~~~~~~~~~~~v~~~~~~-~~~--~l~~~~~d~~i~~wd 280 (615)
T 1pgu_A 213 EFSPDSGEFVITVGSDRKISCFDGKSGE---------FLKYIEDDQEPVQGGIFALSWL-DSQ--KFATVGADATIRVWD 280 (615)
T ss_dssp EECSTTCCEEEEEETTCCEEEEETTTCC---------EEEECCBTTBCCCSCEEEEEES-SSS--EEEEEETTSEEEEEE
T ss_pred EECCCCCCEEEEEeCCCeEEEEECCCCC---------EeEEecccccccCCceEEEEEc-CCC--EEEEEcCCCcEEEEE
Confidence 997 5699999999999999998876 56666 4 788899999999 775 899999999999999
Q ss_pred ccCCCceeEEEeec--CCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 320 LQSSPPVLIARLSH--AQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 320 ~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
+.+++ ....+.. ..+...+.++.|+ ++.++++++.||.|++||+.+
T Consensus 281 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~ 328 (615)
T 1pgu_A 281 VTTSK--CVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGH 328 (615)
T ss_dssp TTTTE--EEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTE
T ss_pred CCCCc--EEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCC
Confidence 99884 4444441 2335678888886 889999999999999999863
No 80
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-39 Score=299.30 Aligned_cols=316 Identities=10% Similarity=0.042 Sum_probs=221.4
Q ss_pred ecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeec-------------cCCcccceeEEEeee
Q 017553 28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYV-------------DEDKEESFYTVSWAC 93 (369)
Q Consensus 28 ~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~-------------~~~~~~~v~~~~~~~ 93 (369)
.+++|.++|++++|+|. ++..+++++.++ | +||+.+++.+..+..+. ...|...|.+++|+
T Consensus 146 ~~~~h~~~V~sl~~sp~---~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs- 220 (902)
T 2oaj_A 146 FPAARLSPIVSIQWNPR---DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH- 220 (902)
T ss_dssp CSSSCCCCCCEEEEETT---EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC-
T ss_pred ccccCCCCeEEEEEccC---CCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEc-
Confidence 45789999999999994 257899999998 8 99999988877776431 11345779999998
Q ss_pred cCCCccEEEEeecCCeEEEEEcCCccccce--e---ec-------------cccceEEEEec----CCCCceEEEEeCC-
Q 017553 94 NVDGIPFLVAGGINGIIRVIDVSNEKLHKS--F---VG-------------HGDSINEIRTQ----PLKPSLVVSASKD- 150 (369)
Q Consensus 94 ~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~--~---~~-------------~~~~v~~~~~~----~~~~~~l~s~~~d- 150 (369)
|+|. +|++|+.||.|++||+.+++++.. + .. |...|.+++|+ |+++.+|++|+.|
T Consensus 221 -pdg~-~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~ 298 (902)
T 2oaj_A 221 -PNSL-HIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSIS 298 (902)
T ss_dssp -TTSS-EEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECST
T ss_pred -CCCC-EEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCC
Confidence 9998 999999999999999988876542 2 11 34579999995 3222455666443
Q ss_pred ----CcEEEEE---------------------------------------------------------------------
Q 017553 151 ----ESVRLWN--------------------------------------------------------------------- 157 (369)
Q Consensus 151 ----g~i~vwd--------------------------------------------------------------------- 157 (369)
..+++|+
T Consensus 299 ~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~ 378 (902)
T 2oaj_A 299 RGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIET 378 (902)
T ss_dssp TSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEE
T ss_pred CCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEE
Confidence 1455554
Q ss_pred --ccCCcEEEEe----eccCCCCCcEE----------------------------------EEEecCCCceEEEEEeeCC
Q 017553 158 --VQTGICILIF----AGAGGHRNEVL----------------------------------SVDFHPSDIYRIASCGMDN 197 (369)
Q Consensus 158 --~~~~~~~~~~----~~~~~~~~~v~----------------------------------~~~~~~~~~~~l~~~~~d~ 197 (369)
+.++...... .....|...|+ +++|+| ++++|++|+.|+
T Consensus 379 ~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~sp-dg~~laSgs~Dg 457 (902)
T 2oaj_A 379 MLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAE-YGTAFITGHSNG 457 (902)
T ss_dssp EETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCS-EEEEEEEEETTS
T ss_pred EECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccc-cCcEEEEecCCC
Confidence 3333211110 00011223344 445567 889999999999
Q ss_pred cEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCC
Q 017553 198 TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPG 275 (369)
Q Consensus 198 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~ 275 (369)
+|++||+..+.......+. ..........|...|.+++|+ +++|++|+.||+|++||+.+.+....
T Consensus 458 tVrlWd~~~g~~~~~~~~~------------~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~ 525 (902)
T 2oaj_A 458 SVRIYDASHGDIQDNASFE------------VNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSV 525 (902)
T ss_dssp EEEEEESSCCTTTTTBCEE------------EEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---
T ss_pred cEEEEECCCccccCCceEE------------eechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCc
Confidence 9999999884210000000 000000012788999999998 88999999999999999987632100
Q ss_pred ------------------------------------CCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEE
Q 017553 276 ------------------------------------EGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE 319 (369)
Q Consensus 276 ------------------------------------~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d 319 (369)
.....++..+..|...|++++|||+| +||+|+.|++|++||
T Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG---~lAsgs~D~tv~lwd 602 (902)
T 2oaj_A 526 ENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG---FVGIAYAAGSLMLID 602 (902)
T ss_dssp ------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS---EEEEEETTSEEEEEE
T ss_pred cccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc---EEEEEeCCCcEEEEE
Confidence 00012466777899999999999998 899999999999999
Q ss_pred ccCCCceeEEEee-cC-CCccceEEEEec-----CCC---CEEEEeecCCeEEEEec
Q 017553 320 LQSSPPVLIARLS-HA-QSKSPIRQTAMS-----YDG---STILSCCEDGAIWRWDA 366 (369)
Q Consensus 320 ~~~~~~~~~~~~~-~~-~~~~~v~~~~~s-----~~~---~~l~s~~~dg~i~vw~~ 366 (369)
+.+........+. .. +|...|++++|+ ||| ++|++|+.|++|++||+
T Consensus 603 ~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 603 RRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp TTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred CCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence 8876322111222 32 788999999999 885 89999999999999998
No 81
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-37 Score=269.24 Aligned_cols=286 Identities=15% Similarity=0.068 Sum_probs=224.9
Q ss_pred cCeEEEEEeeccCCCccEEEEecCCcEEEEEecCCc---eeEEEeeecc-------------------------------
Q 017553 34 RPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGG---VIAALQSYVD------------------------------- 79 (369)
Q Consensus 34 ~~v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~---~~~~~~~~~~------------------------------- 79 (369)
.++.+++|+| +|++|+++..+.|++||+.+++ .+..+.....
T Consensus 5 ~p~~~v~~s~----dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (450)
T 2vdu_B 5 HPLQNLLTSR----DGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNK 80 (450)
T ss_dssp CCCCEEEECS----SSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC--------------------------------
T ss_pred ccEEEEEecC----CCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCc
Confidence 5789999999 6888888877779999999998 5544442211
Q ss_pred ------------------CCcccceeEEEeeecCCCccE-EEEeecCCeEEEEEcC--Cccccceee--ccccceEEEEe
Q 017553 80 ------------------EDKEESFYTVSWACNVDGIPF-LVAGGINGIIRVIDVS--NEKLHKSFV--GHGDSINEIRT 136 (369)
Q Consensus 80 ------------------~~~~~~v~~~~~~~~~~g~~~-l~~~~~dg~i~vwd~~--~~~~~~~~~--~~~~~v~~~~~ 136 (369)
+.+...|.+++|+ |+|+ + +++|+.||.|++||+. +++.+..+. .|...|.+++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~d~~-~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~ 157 (450)
T 2vdu_B 81 GDSIKRTAAKVPSPGLGAPPIYSYIRNLRLT--SDES-RLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISI 157 (450)
T ss_dssp -------------------CCCCCEEEEEEC--TTSS-EEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEE
T ss_pred CccccccCccccCCCCCCCccCCceEEEEEc--CCCC-EEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEE
Confidence 1233368899888 9999 6 4899999999999999 888888876 56789999999
Q ss_pred cCCCCceEEEEeCCCcEEEEEccCCcEEE----EeeccCCCCCcEEEEEecCCC---ceEEEEEeeCCcEEEEEccCcee
Q 017553 137 QPLKPSLVVSASKDESVRLWNVQTGICIL----IFAGAGGHRNEVLSVDFHPSD---IYRIASCGMDNTVKIWSMKEFWT 209 (369)
Q Consensus 137 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~d~~v~i~d~~~~~~ 209 (369)
+| ++.+|++|+.||.|++|++.+++... .+. +|...|.+++|+| + +.+|++++.|+.|++||++++
T Consensus 158 sp-~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~sp-~~~~~~~l~s~~~d~~i~vwd~~~~-- 230 (450)
T 2vdu_B 158 AE-DDTTVIIADKFGDVYSIDINSIPEEKFTQEPIL---GHVSMLTDVHLIK-DSDGHQFIITSDRDEHIKISHYPQC-- 230 (450)
T ss_dssp CT-TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSE---ECSSCEEEEEEEE-CTTSCEEEEEEETTSCEEEEEESCT--
T ss_pred cC-CCCEEEEEeCCCcEEEEecCCcccccccceeee---cccCceEEEEEcC-CCCCCcEEEEEcCCCcEEEEECCCC--
Confidence 99 88999999999999999998877543 444 6999999999999 7 889999999999999999873
Q ss_pred eeeeeeeccCCCCCCCCceeecceee-eccCCCceeeeeee-CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeecc-
Q 017553 210 YVEKSFTWTDLPSKFPTKYVQFPVFI-ASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP- 286 (369)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~- 286 (369)
..+.. ..+|...|.+++|+ +++|++++.|+.|++||+++++. +..+.
T Consensus 231 ---------------------~~~~~~~~~h~~~v~~~~~sd~~~l~s~~~d~~v~vwd~~~~~~---------~~~~~~ 280 (450)
T 2vdu_B 231 ---------------------FIVDKWLFGHKHFVSSICCGKDYLLLSAGGDDKIFAWDWKTGKN---------LSTFDY 280 (450)
T ss_dssp ---------------------TCEEEECCCCSSCEEEEEECSTTEEEEEESSSEEEEEETTTCCE---------EEEEEC
T ss_pred ---------------------ceeeeeecCCCCceEEEEECCCCEEEEEeCCCeEEEEECCCCcE---------eeeecc
Confidence 22333 55799999999996 88999999999999999998762 22222
Q ss_pred ------------------------CCCCCeeEEEEeecCCccEEEEec-CCCeEEEEEc--cCC-CceeEEEeecCCCcc
Q 017553 287 ------------------------VPECDIWFIKFSCDFHYNAAAIGN-REGKIFVWEL--QSS-PPVLIARLSHAQSKS 338 (369)
Q Consensus 287 ------------------------~~~~~i~~~~~s~~~~~~~l~~~~-~dg~i~i~d~--~~~-~~~~~~~~~~~~~~~ 338 (369)
.....+..++|+|+++ ++++++ .++.|++|++ ..+ ....+..+. .+ .
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~--~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~--~~-~ 355 (450)
T 2vdu_B 281 NSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLP--FVAFFVEATKCIIILEMSEKQKGDLALKQIIT--FP-Y 355 (450)
T ss_dssp HHHHGGGCCTTSBC----------CBCCCEEEEEECSSSS--EEEEEETTCSEEEEEEECSSSTTCEEEEEEEE--CS-S
T ss_pred hhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCC--EEEEEECCCCeEEEEEeccCCCCceeeccEec--cC-C
Confidence 2235688999999986 777777 8999999999 432 224455555 55 7
Q ss_pred ceEEEEecCCCCEEEEeec------CCeEEEEecCC
Q 017553 339 PIRQTAMSYDGSTILSCCE------DGAIWRWDAIP 368 (369)
Q Consensus 339 ~v~~~~~s~~~~~l~s~~~------dg~i~vw~~~~ 368 (369)
.|.+++|+|++.++++++. +..|.+|.+..
T Consensus 356 ~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 356 NVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp CEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred ceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 8999999996544444443 45588887653
No 82
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=9.1e-38 Score=267.67 Aligned_cols=284 Identities=15% Similarity=0.105 Sum_probs=223.0
Q ss_pred ccccccccccccccccccc----eeeeeecccCCcCeEEEEEeeccCCCc---cEEEEecCCc-EEEEEecCCce-----
Q 017553 4 TAIGCEPLVGSLTPSKKRE----YRVTNKLQEGKRPLYAVVFNFIDSRYF---NVFATVGGNR-VTVYQCLEGGV----- 70 (369)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~h~~~v~~~~~s~~~~~~~---~~la~~~~~~-v~iw~~~~~~~----- 70 (369)
+++++.+....+....... ++....+.+|...|++++|+|+...++ ++|++++.|+ |++|++.+++.
T Consensus 29 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 108 (397)
T 1sq9_A 29 TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVI 108 (397)
T ss_dssp EEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEE
T ss_pred EEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccccccc
Confidence 4555555544444333322 456777889999999999999200117 8999999888 99999998876
Q ss_pred eEEEeeeccCCcccceeEEEeeec--CCCccE-EEEeecCCeEEEEEcCC------ccccc-----eee-------cccc
Q 017553 71 IAALQSYVDEDKEESFYTVSWACN--VDGIPF-LVAGGINGIIRVIDVSN------EKLHK-----SFV-------GHGD 129 (369)
Q Consensus 71 ~~~~~~~~~~~~~~~v~~~~~~~~--~~g~~~-l~~~~~dg~i~vwd~~~------~~~~~-----~~~-------~~~~ 129 (369)
...+..+........|.+++|+.. |++. + |++++.||.|++||+.+ ++.+. .+. .|..
T Consensus 109 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (397)
T 1sq9_A 109 FEKLDLLDSDMKKHSFWALKWGASNDRLLS-HRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQ 187 (397)
T ss_dssp EEEECCSCTTGGGSCEEEEEEECCC----C-EEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCC
T ss_pred ceeecccccccCCCcEEEEEEeeccCCCCc-eEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCC
Confidence 666553211000578999988744 6787 8 99999999999999998 77777 774 4889
Q ss_pred ceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCC---CCcEEEEEecCCCceEEEEEeeC---CcEEEEE
Q 017553 130 SINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGH---RNEVLSVDFHPSDIYRIASCGMD---NTVKIWS 203 (369)
Q Consensus 130 ~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~~~~~d---~~v~i~d 203 (369)
.|.+++|+| ++ +|++++.||.|++||+++++.+..+....+| ...|.+++|+| ++.+|++++.| +.|++||
T Consensus 188 ~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~-~~~~l~~~~~d~~~g~i~i~d 264 (397)
T 1sq9_A 188 FATSVDISE-RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLYE 264 (397)
T ss_dssp CCCEEEECT-TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS-STTEEEEEEEETTEEEEEEEE
T ss_pred CceEEEECC-Cc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECC-CCCEEEEEecCCCCceEEEEE
Confidence 999999999 77 9999999999999999999999888821128 99999999999 88999999999 9999999
Q ss_pred ccCceeeeeeeeeccCCCCCCCCceeecceeeecc-------------CCCceeeeeee--CcEEEEeecCCeEEEecCC
Q 017553 204 MKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV-------------HSNYVDCNRWL--GDFILSKSVDNEIVLWEPK 268 (369)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~ 268 (369)
+++++ .+..+.. |...|.+++|+ +++|++++.|+.|++||++
T Consensus 265 ~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 321 (397)
T 1sq9_A 265 TEFGE-----------------------RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK 321 (397)
T ss_dssp TTTCC-----------------------EEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred CCCCc-----------------------ccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence 99842 3344444 89999999997 7899999999999999998
Q ss_pred CCCCCCCCCccceeeecc------CC---------------CCCeeEEEEeecCC--------ccEEEEecCCCeEEEEE
Q 017553 269 MKEQSPGEGTADILQKYP------VP---------------ECDIWFIKFSCDFH--------YNAAAIGNREGKIFVWE 319 (369)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~------~~---------------~~~i~~~~~s~~~~--------~~~l~~~~~dg~i~i~d 319 (369)
+.+ .+..+. .+ ...|.+++|+|+++ ..+|++++.||.|++||
T Consensus 322 ~~~---------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~ 392 (397)
T 1sq9_A 322 TKE---------RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 392 (397)
T ss_dssp TTE---------EEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred CCc---------eeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEE
Confidence 876 455555 55 88999999999972 13899999999999999
Q ss_pred ccCC
Q 017553 320 LQSS 323 (369)
Q Consensus 320 ~~~~ 323 (369)
+.++
T Consensus 393 ~~~g 396 (397)
T 1sq9_A 393 EAGG 396 (397)
T ss_dssp EEC-
T ss_pred cCCC
Confidence 9876
No 83
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=2e-37 Score=267.83 Aligned_cols=251 Identities=19% Similarity=0.307 Sum_probs=210.4
Q ss_pred CcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCC----------ccccceeeccccceEEEEecCCCCc-eEEEEeC
Q 017553 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN----------EKLHKSFVGHGDSINEIRTQPLKPS-LVVSASK 149 (369)
Q Consensus 81 ~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~ 149 (369)
.|.+.|++++|+ |++..+|++++.+|.|++|++.+ .+....+.+|...|.+++|+| ++. +|++|+.
T Consensus 126 ~h~~~v~~l~~~--p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~~l~s~~~ 202 (430)
T 2xyi_A 126 NHEGEVNRARYM--PQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNP-NLNGYLLSASD 202 (430)
T ss_dssp EESSCCSEEEEE--TTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECT-TSTTEEEEECT
T ss_pred cCCCcEEEEEEC--CCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCC-CCCCeEEEEeC
Confidence 578899999998 87444999999999999999987 567788889999999999999 555 9999999
Q ss_pred CCcEEEEEccCCcE-------EEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCC
Q 017553 150 DESVRLWNVQTGIC-------ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPS 222 (369)
Q Consensus 150 dg~i~vwd~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~ 222 (369)
||.|++||+..+.. ...+. +|...|.+++|+|.++.+|++++.|+.|++||++....
T Consensus 203 dg~i~vwd~~~~~~~~~~~~~~~~~~---~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~------------- 266 (430)
T 2xyi_A 203 DHTICLWDINATPKEHRVIDAKNIFT---GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT------------- 266 (430)
T ss_dssp TSCEEEEETTSCCBGGGEEECSEEEC---CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS-------------
T ss_pred CCeEEEEeCCCCCCCCceeccceeec---CCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC-------------
Confidence 99999999987422 23333 79999999999997788999999999999999997310
Q ss_pred CCCCceeecceeeeccCCCceeeeeee--Cc-EEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEee
Q 017553 223 KFPTKYVQFPVFIASVHSNYVDCNRWL--GD-FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSC 299 (369)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 299 (369)
..++..+..|...|.+++|+ +. ++++++.||.|++||+++... .+..+..|...|.+++|+|
T Consensus 267 -------~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~--------~~~~~~~h~~~v~~i~~sp 331 (430)
T 2xyi_A 267 -------SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL--------KLHSFESHKDEIFQVQWSP 331 (430)
T ss_dssp -------SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS--------CSEEEECCSSCEEEEEECS
T ss_pred -------CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC--------CeEEeecCCCCEEEEEECC
Confidence 13455567899999999998 44 789999999999999997542 5677778889999999999
Q ss_pred cCCccEEEEecCCCeEEEEEccCCC------------ceeEEEeecCCCccceEEEEecCCCC-EEEEeecCCeEEEEec
Q 017553 300 DFHYNAAAIGNREGKIFVWELQSSP------------PVLIARLSHAQSKSPIRQTAMSYDGS-TILSCCEDGAIWRWDA 366 (369)
Q Consensus 300 ~~~~~~l~~~~~dg~i~i~d~~~~~------------~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~vw~~ 366 (369)
+++ .+|++++.||.|++||+.... +..+..+. +|...|++++|+|+++ +|++++.||.|+||++
T Consensus 332 ~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~ 408 (430)
T 2xyi_A 332 HNE-TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG--GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408 (430)
T ss_dssp SCT-TEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECC--CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred CCC-CEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcC--CCCCCceEEEECCCCCCEEEEEECCCCEEEeEc
Confidence 986 479999999999999998732 13444444 8889999999999999 9999999999999998
Q ss_pred CC
Q 017553 367 IP 368 (369)
Q Consensus 367 ~~ 368 (369)
..
T Consensus 409 ~~ 410 (430)
T 2xyi_A 409 AE 410 (430)
T ss_dssp CH
T ss_pred cc
Confidence 53
No 84
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.8e-37 Score=288.30 Aligned_cols=314 Identities=18% Similarity=0.198 Sum_probs=254.2
Q ss_pred ccccccccccccccccccceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCc
Q 017553 4 TAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDK 82 (369)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~ 82 (369)
+|++.......+ ++....+....+.+|..+|++++|+| ++++||+++.++ |++||+.+++.+..+. .|
T Consensus 28 la~~~~~g~v~i--wd~~~~~~~~~~~~~~~~v~~~~~s~----~~~~l~~~~~dg~i~vw~~~~~~~~~~~~-----~~ 96 (814)
T 3mkq_A 28 VLTTLYSGRVEI--WNYETQVEVRSIQVTETPVRAGKFIA----RKNWIIVGSDDFRIRVFNYNTGEKVVDFE-----AH 96 (814)
T ss_dssp EEEEETTSEEEE--EETTTTEEEEEEECCSSCEEEEEEEG----GGTEEEEEETTSEEEEEETTTCCEEEEEE-----CC
T ss_pred EEEEeCCCEEEE--EECCCCceEEEEecCCCcEEEEEEeC----CCCEEEEEeCCCeEEEEECCCCcEEEEEe-----cC
Confidence 445554443333 33445566777889999999999999 689999999988 9999999998888776 57
Q ss_pred ccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCc-cccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCC
Q 017553 83 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE-KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG 161 (369)
Q Consensus 83 ~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~ 161 (369)
...|.+++|+ |+++ +|++++.||.|++||+.++ .....+.+|...|.+++|+|.++..|++++.||.|++||+.++
T Consensus 97 ~~~v~~~~~s--~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~ 173 (814)
T 3mkq_A 97 PDYIRSIAVH--PTKP-YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS 173 (814)
T ss_dssp SSCEEEEEEC--SSSS-EEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCS
T ss_pred CCCEEEEEEe--CCCC-EEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 8899999998 9998 9999999999999999887 6678888999999999999966789999999999999999988
Q ss_pred cEEEEeeccCCCCCcEEEEEecCC-CceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCC
Q 017553 162 ICILIFAGAGGHRNEVLSVDFHPS-DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 240 (369)
Q Consensus 162 ~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (369)
+....+.. .+...+.+++|+|. ++.++++++.||.|++||++++ ..+..+..|.
T Consensus 174 ~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-----------------------~~~~~~~~~~ 228 (814)
T 3mkq_A 174 TPNFTLTT--GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK-----------------------SCVATLEGHM 228 (814)
T ss_dssp SCSEEEEC--CCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT-----------------------EEEEEEECCS
T ss_pred cceeEEec--CCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC-----------------------cEEEEEcCCC
Confidence 87777663 34588999999973 5678999999999999999883 3456677899
Q ss_pred Cceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEE
Q 017553 241 NYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW 318 (369)
Q Consensus 241 ~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~ 318 (369)
..|.+++|+ ++++++++.||.|++||+.+.+ .+..+..+...+.+++|+|++...+++++. ++.+.+|
T Consensus 229 ~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~ 298 (814)
T 3mkq_A 229 SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK---------VEKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVL 298 (814)
T ss_dssp SCEEEEEECSSSSEEEEEETTSCEEEEETTTCS---------EEEEECCSSSSEEEEEECTTCGGGEEEEEE-TTEEEEE
T ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---------EEEEeecCCCcEEEEEEccCCCceEEEEEe-CCCEEEE
Confidence 999999997 6799999999999999998876 677778888899999999998743455554 6678889
Q ss_pred EccCCCcee--------EEE-------------------------------eecCCCccceEEEEecCCCCEEEEeecCC
Q 017553 319 ELQSSPPVL--------IAR-------------------------------LSHAQSKSPIRQTAMSYDGSTILSCCEDG 359 (369)
Q Consensus 319 d~~~~~~~~--------~~~-------------------------------~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 359 (369)
++....+.. +.. .....+...+.+++|+|+|++|++++ ||
T Consensus 299 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~ 377 (814)
T 3mkq_A 299 SLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DG 377 (814)
T ss_dssp ECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TT
T ss_pred EcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CC
Confidence 876542211 110 00013445678999999999999888 89
Q ss_pred eEEEEecC
Q 017553 360 AIWRWDAI 367 (369)
Q Consensus 360 ~i~vw~~~ 367 (369)
.+.+|++.
T Consensus 378 ~~~i~~~~ 385 (814)
T 3mkq_A 378 EYVIYTAL 385 (814)
T ss_dssp EEEEEETT
T ss_pred EEEEEECc
Confidence 99999864
No 85
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=3.2e-37 Score=263.18 Aligned_cols=320 Identities=17% Similarity=0.130 Sum_probs=206.6
Q ss_pred cCeEEEEEeeccCCCccEEEEecCCcEEEEEecCCc-------eeEEEeeeccCCcccceeEEEee--------------
Q 017553 34 RPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGG-------VIAALQSYVDEDKEESFYTVSWA-------------- 92 (369)
Q Consensus 34 ~~v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~-------------- 92 (369)
...+++.|....+....+++.+.++.|.+|+..... ....+... .+...+..+.|.
T Consensus 16 ~~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (393)
T 4gq1_A 16 VRPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTI---QTGLPTLHLSFSSSCSYSENLHDGDG 92 (393)
T ss_dssp CCEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEE---ECSSCEEEEEECTTCEEECC------
T ss_pred CCCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEE---ecCCCeeeEeecCCccccccccCCCc
Confidence 455677775433334578888877779999864221 11111111 123334444433
Q ss_pred ----ecCCCccEEEEeecCCeEEEEEcCCccc-----cceeeccccceEEEEecC-------CCCceEEEEeCCCcEEEE
Q 017553 93 ----CNVDGIPFLVAGGINGIIRVIDVSNEKL-----HKSFVGHGDSINEIRTQP-------LKPSLVVSASKDESVRLW 156 (369)
Q Consensus 93 ----~~~~g~~~l~~~~~dg~i~vwd~~~~~~-----~~~~~~~~~~v~~~~~~~-------~~~~~l~s~~~dg~i~vw 156 (369)
+.+++. +|++++.|++|++||+.+++. +..+.+|.+.|++++|+| .++++|++|+.|++|+||
T Consensus 93 ~~~~~~~~~~-~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~W 171 (393)
T 4gq1_A 93 NVNSSPVYSL-FLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIW 171 (393)
T ss_dssp ----CCEEEE-EEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEE
T ss_pred ceeecCCCCC-EEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEE
Confidence 113444 899999999999999987753 345778999999999986 257899999999999999
Q ss_pred EccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCC--ceeeccee
Q 017553 157 NVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPT--KYVQFPVF 234 (369)
Q Consensus 157 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 234 (369)
|++++.++..+. .|..+|.+++|+|++..+|++++.|++|++||+++++.................. ........
T Consensus 172 d~~~~~~~~~~~---~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 248 (393)
T 4gq1_A 172 RLTDEGPILAGY---PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTC 248 (393)
T ss_dssp EEETTEEEEEEE---ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC---
T ss_pred ECCCCceeeeec---CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeee
Confidence 999888877776 6999999999999555789999999999999999854432221111000000000 00001122
Q ss_pred eeccCCCceeeeeee---CcEEEEeecCCeEEEecCCCCCCCCCCC----------ccceeeeccCCCCCeeEEEEeecC
Q 017553 235 IASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEG----------TADILQKYPVPECDIWFIKFSCDF 301 (369)
Q Consensus 235 ~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~----------~~~~~~~~~~~~~~i~~~~~s~~~ 301 (369)
....|...+.++.|. ++.+++++.|+.+++||+...+...... ........... .......++|..
T Consensus 249 ~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 327 (393)
T 4gq1_A 249 HSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLF-PSLLGACPHPRY 327 (393)
T ss_dssp ---CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSS-CCSSCCEECSSC
T ss_pred ecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccccccc-CcceeEEEccCC
Confidence 345788889999985 7899999999999999998765321110 00001111111 223334555554
Q ss_pred CccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEec
Q 017553 302 HYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 366 (369)
Q Consensus 302 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~ 366 (369)
...++++|+.||.|++||+.+++... .+. .|..+|.+++|+|||++||+++.+| +.+|++
T Consensus 328 ~~~~~~sgs~Dg~V~lwd~~~~~~~~--~~~--~~~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 328 MDYFATAHSQHGLIQLINTYEKDSNS--IPI--QLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp TTEEEEEETTTTEEEEEETTCTTCCE--EEE--ECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred CCEEEEEECCCCEEEEEECCCCcEEE--Eec--CCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 44578889999999999999886433 333 5567999999999999999998776 556654
No 86
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=6.9e-37 Score=280.11 Aligned_cols=244 Identities=21% Similarity=0.355 Sum_probs=207.6
Q ss_pred CcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCcc-----ccceeeccccceEEEEecCCCCceEEEEeCCCcEEE
Q 017553 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK-----LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRL 155 (369)
Q Consensus 81 ~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~v 155 (369)
.|...|++++|+ |++..+|++|+.||+|++|++.+.. ....+.+|...|.+++|+| ++.+|++|+.|+.|++
T Consensus 380 ~H~~~V~~v~~~--~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~-~g~~l~sgs~Dg~v~v 456 (694)
T 3dm0_A 380 AHTDMVTAIATP--IDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS-DGQFALSGSWDGELRL 456 (694)
T ss_dssp CCSSCEEEEECC--TTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEE
T ss_pred cCCceeEEEEec--CCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECC-CCCEEEEEeCCCcEEE
Confidence 689999999988 7664499999999999999997643 3467889999999999999 8999999999999999
Q ss_pred EEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceee
Q 017553 156 WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI 235 (369)
Q Consensus 156 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (369)
||+.+++.+..+. +|...|.+++|+| ++.+|++++.|++|++||....... .....
T Consensus 457 wd~~~~~~~~~~~---~h~~~v~~~~~s~-~~~~l~s~s~D~~i~iwd~~~~~~~--------------------~~~~~ 512 (694)
T 3dm0_A 457 WDLAAGVSTRRFV---GHTKDVLSVAFSL-DNRQIVSASRDRTIKLWNTLGECKY--------------------TISEG 512 (694)
T ss_dssp EETTTTEEEEEEE---CCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEE--------------------EECSS
T ss_pred EECCCCcceeEEe---CCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEECCCCcce--------------------eeccC
Confidence 9999999998888 7999999999999 8899999999999999998652110 01112
Q ss_pred eccCCCceeeeeeeC----cEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecC
Q 017553 236 ASVHSNYVDCNRWLG----DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR 311 (369)
Q Consensus 236 ~~~~~~~v~~~~~~~----~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~ 311 (369)
...|...|.+++|+. ..+++++.|+.|++||+++.+ ....+..|...|.+++|+|+++ +|++++.
T Consensus 513 ~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~---------~~~~~~~h~~~v~~v~~spdg~--~l~sg~~ 581 (694)
T 3dm0_A 513 GEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK---------LRSTLAGHTGYVSTVAVSPDGS--LCASGGK 581 (694)
T ss_dssp TTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC---------EEEEECCCSSCEEEEEECTTSS--EEEEEET
T ss_pred CCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc---------EEEEEcCCCCCEEEEEEeCCCC--EEEEEeC
Confidence 246889999999972 479999999999999998765 6777888999999999999996 9999999
Q ss_pred CCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 312 EGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 312 dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
||.|++||+.++ ..+..+. +...|.+++|+|++.+|++++ |+.|+|||+.+
T Consensus 582 Dg~i~iwd~~~~--~~~~~~~---~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~ 632 (694)
T 3dm0_A 582 DGVVLLWDLAEG--KKLYSLE---ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLES 632 (694)
T ss_dssp TSBCEEEETTTT--EEEECCB---CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTT
T ss_pred CCeEEEEECCCC--ceEEEec---CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCC
Confidence 999999999988 3444443 336799999999998887765 56699999865
No 87
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.1e-36 Score=258.67 Aligned_cols=256 Identities=12% Similarity=0.108 Sum_probs=213.6
Q ss_pred CcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCcc--ccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEc
Q 017553 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK--LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 158 (369)
Q Consensus 81 ~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~ 158 (369)
.|..+|.+++|+ |+++ +|++++.||.|++||+.+++ .+..+.+|...|.+++|+| ++++|++++.||.|++||+
T Consensus 6 ~~~~~i~~~~~s--~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~ 81 (372)
T 1k8k_C 6 FLVEPISCHAWN--KDRT-QIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTL 81 (372)
T ss_dssp SCSSCCCEEEEC--TTSS-EEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEEE
T ss_pred ccCCCeEEEEEC--CCCC-EEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeC-CCCEEEEEcCCCeEEEEEC
Confidence 477899999998 9998 99999999999999999887 8889999999999999999 8999999999999999999
Q ss_pred cCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeecc
Q 017553 159 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV 238 (369)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (369)
++++....+. ...|...|.+++|+| ++++|++++.|+.|++||++..... .........
T Consensus 82 ~~~~~~~~~~-~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~-------------------~~~~~~~~~ 140 (372)
T 1k8k_C 82 KGRTWKPTLV-ILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDW-------------------WVCKHIKKP 140 (372)
T ss_dssp ETTEEEEEEE-CCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTE-------------------EEEEEECTT
T ss_pred CCCeeeeeEE-eecCCCceeEEEECC-CCCEEEEEeCCCEEEEEEecCCCcc-------------------eeeeeeecc
Confidence 9887555443 126899999999999 8899999999999999999883210 011223356
Q ss_pred CCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCC---------CCccceeeeccCCCCCeeEEEEeecCCccEEE
Q 017553 239 HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPG---------EGTADILQKYPVPECDIWFIKFSCDFHYNAAA 307 (369)
Q Consensus 239 ~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~---------~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~ 307 (369)
|...|.+++|+ ++++++++.|+.|++||++....... ......+..+..|...+.+++|+|+++ +|+
T Consensus 141 ~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~ 218 (372)
T 1k8k_C 141 IRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS--RVA 218 (372)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS--EEE
T ss_pred cCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCC--EEE
Confidence 88999999997 77999999999999999764321110 112236777778889999999999996 899
Q ss_pred EecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 308 IGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 308 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
+++.||.|++||+.+++ .+..+. .|..+|.+++|+|++++|+++ .|+.|++|++.+
T Consensus 219 ~~~~d~~i~i~d~~~~~--~~~~~~--~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 219 WVSHDSTVCLADADKKM--AVATLA--SETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp EEETTTEEEEEEGGGTT--EEEEEE--CSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred EEeCCCEEEEEECCCCc--eeEEEc--cCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 99999999999999885 455565 777899999999999988887 899999999864
No 88
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=8.2e-37 Score=257.02 Aligned_cols=298 Identities=10% Similarity=0.041 Sum_probs=214.1
Q ss_pred eeeecccCCcCeEEEEEeeccCCCccEEEEecCCcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEe
Q 017553 25 VTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG 104 (369)
Q Consensus 25 ~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~ 104 (369)
+...++.|...|++++|+| +|++||+|+.++++||+..+++...... ...+..+++. +++..+++++
T Consensus 11 ~~~~~~~h~~~V~~v~fs~----dg~~la~g~~~~~~iw~~~~~~~~~~~~-------~~~~~~~~~~--~~~~~~~~~~ 77 (355)
T 3vu4_A 11 PIVPENHVSNPVTDYEFNQ----DQSCLILSTLKSFEIYNVHPVAHIMSQE-------MRHLSKVRML--HRTNYVAFVT 77 (355)
T ss_dssp --------CCCCCEEEECT----TSSEEEEECSSEEEEEEETTEEEEEEEE-------CSCCCEEEEC--TTSSEEEEEC
T ss_pred CccccccCCCceEEEEECC----CCCEEEEEcCCEEEEEecCCcceeeeee-------cCCeEEEEEc--CCCCEEEEEE
Confidence 3445688999999999999 6899999999999999988765543322 1246667777 5555345778
Q ss_pred ecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCC-cEEEEeeccCCCCCcEEEEEec
Q 017553 105 GINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG-ICILIFAGAGGHRNEVLSVDFH 183 (369)
Q Consensus 105 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~v~~~~~~ 183 (369)
+.|+.|++||+.+++.+..+. +...|.+++|++ + .++.+ .|+.|++||+.++ +.+..+. . +...++++
T Consensus 78 ~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~-~--~~~~~-~~~~i~i~d~~~~~~~~~~~~---~---~~~~~~~s 146 (355)
T 3vu4_A 78 GVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSR-E--FIVVS-YGDVISVFKFGNPWKRITDDI---R---FGGVCEFS 146 (355)
T ss_dssp SSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECS-S--EEEEE-ETTEEEEEESSTTCCBSSCCE---E---EEEEEEEE
T ss_pred CCccEEEEEECCCCcEEEEEE-CCCceEEEEEcC-C--EEEEE-EcCEEEEEECCCCceeeEEec---c---CCceEEEE
Confidence 888999999999999988887 677999999987 3 34443 4789999999988 6666554 2 44456666
Q ss_pred CCCceEEEE--EeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecc-eeeeccCCCceeeeeee--CcEEEEeec
Q 017553 184 PSDIYRIAS--CGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP-VFIASVHSNYVDCNRWL--GDFILSKSV 258 (369)
Q Consensus 184 ~~~~~~l~~--~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~--~~~l~~~~~ 258 (369)
+ .+++. |+.||.|++||++++......... .......+ +..+.+|...|.+++|+ +++|++++.
T Consensus 147 ~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~--------~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~ 215 (355)
T 3vu4_A 147 N---GLLVYSNEFNLGQIHITKLQSSGSATTQDQG--------VQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQ 215 (355)
T ss_dssp T---TEEEEEESSCTTCEEEEECCC--------------------------CCEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred c---cEEEEeCCCcCcEEEEEECCCCCcccccccc--------ccccccCcccEEEEccCCceEEEEECCCCCEEEEEeC
Confidence 5 34444 688999999999974311100000 00000123 66788999999999997 789999999
Q ss_pred CCe-EEEecCCCCCCCCCCCccceeeecc-C-CCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEee---
Q 017553 259 DNE-IVLWEPKMKEQSPGEGTADILQKYP-V-PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLS--- 332 (369)
Q Consensus 259 d~~-i~i~d~~~~~~~~~~~~~~~~~~~~-~-~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--- 332 (369)
|++ |++||+++++ .+..+. . |...|.+++|+|+++ +|++++.|+.|++||+..........+.
T Consensus 216 d~~~v~iwd~~~~~---------~~~~~~~g~h~~~v~~~~~s~~~~--~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~ 284 (355)
T 3vu4_A 216 DGTIIRVFKTEDGV---------LVREFRRGLDRADVVDMKWSTDGS--KLAVVSDKWTLHVFEIFNDQDNKRHALKGWI 284 (355)
T ss_dssp TCSEEEEEETTTCC---------EEEEEECTTCCSCEEEEEECTTSC--EEEEEETTCEEEEEESSCCSCCCSEETTTTE
T ss_pred CCCEEEEEECCCCc---------EEEEEEcCCCCCcEEEEEECCCCC--EEEEEECCCEEEEEEccCCCCccccccccee
Confidence 998 9999999876 566676 4 889999999999996 9999999999999999865322111110
Q ss_pred ----------------cCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 333 ----------------HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 333 ----------------~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
..........++|++|+++|++++.||.+++|++.+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 285 NMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp ECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred eccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence 011223346799999999999999999999999753
No 89
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.5e-38 Score=269.27 Aligned_cols=252 Identities=10% Similarity=0.118 Sum_probs=200.4
Q ss_pred cccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCc--cccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEcc
Q 017553 82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE--KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 159 (369)
Q Consensus 82 ~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~ 159 (369)
+..+|.+++|+ |+|+ +|++|+.||.|++||+.++ +.+..+.+|...|.+++|+| ++++|++++.|+.|++||+.
T Consensus 10 ~~~~v~~~~~s--~~g~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 10 LPKPSYEHAFN--SQRT-EFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAP-KSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp CSSCCSCCEEC--SSSS-EEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECT-TTCCEEEEETTSSEEEC---
T ss_pred CCCcEEEEEEC--CCCC-EEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeC-CCCEEEEEeCCCeEEEEEcC
Confidence 55689999998 8998 9999999999999999988 78889999999999999999 88999999999999999999
Q ss_pred CCc---EEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeee
Q 017553 160 TGI---CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA 236 (369)
Q Consensus 160 ~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (369)
+++ ....+. +|...|.+++|+| ++++|++++.|+.|++||++.... ......+
T Consensus 86 ~~~~~~~~~~~~---~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~--------------------~~~~~~~ 141 (377)
T 3dwl_C 86 PDGTWKQTLVLL---RLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQEND--------------------WWVSKHL 141 (377)
T ss_dssp ---CCCCEEECC---CCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-------------------------CCCCEEE
T ss_pred CCCceeeeeEec---ccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCccc--------------------ceeeeEe
Confidence 877 455555 7999999999999 889999999999999999988321 0123445
Q ss_pred cc-CCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCC---------CccceeeeccCCCCCeeEEEEeecCCcc
Q 017553 237 SV-HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGE---------GTADILQKYPVPECDIWFIKFSCDFHYN 304 (369)
Q Consensus 237 ~~-~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~---------~~~~~~~~~~~~~~~i~~~~~s~~~~~~ 304 (369)
.. |...|.+++|+ ++++++++.|+.|++||++........ .....+..+ .|...|.+++|+|+++
T Consensus 142 ~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~-- 218 (377)
T 3dwl_C 142 KRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGN-- 218 (377)
T ss_dssp CSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSS--
T ss_pred ecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCC--
Confidence 55 99999999997 779999999999999999754321110 112345555 7888999999999996
Q ss_pred EEEEecCCCeEEEEEccCCCcee--EEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecC
Q 017553 305 AAAIGNREGKIFVWELQSSPPVL--IARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 305 ~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 367 (369)
+|++++.||.|++||+.+++... +..+. +|...|.+++|+|++++|++++.++.+ +|+..
T Consensus 219 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 219 ALAYAGHDSSVTIAYPSAPEQPPRALITVK--LSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp CEEEEETTTEEC-CEECSTTSCEEECCCEE--CSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred EEEEEeCCCcEEEEECCCCCCcceeeEeec--CCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 89999999999999999986422 34444 788999999999999999999877655 77654
No 90
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.6e-36 Score=254.50 Aligned_cols=279 Identities=14% Similarity=0.153 Sum_probs=215.8
Q ss_pred ccccccccccccc---cccccceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeecc
Q 017553 4 TAIGCEPLVGSLT---PSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVD 79 (369)
Q Consensus 4 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~ 79 (369)
+++|+.+....+. ........+.+.+++|...|.+++|+| ++++|++++.|+ |++|+...........
T Consensus 54 l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~----dg~~l~s~~~d~~i~~~~~~~~~~~~~~~---- 125 (340)
T 4aow_A 54 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS----DGQFALSGSWDGTLRLWDLTTGTTTRRFV---- 125 (340)
T ss_dssp EEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECT----TSSEEEEEETTSEEEEEETTTTEEEEEEE----
T ss_pred EEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECC----CCCEEEEEcccccceEEeecccceeeeec----
Confidence 4555555544443 323334456677899999999999999 689999999999 9999988877666655
Q ss_pred CCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccc-cceeeccccceEEEEecCCC-CceEEEEeCCCcEEEEE
Q 017553 80 EDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL-HKSFVGHGDSINEIRTQPLK-PSLVVSASKDESVRLWN 157 (369)
Q Consensus 80 ~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~vwd 157 (369)
.+...+....+. +++. +|++++.|+.+++||+..... .....+|...+..++|++.. ..++++++.|+.|++||
T Consensus 126 -~~~~~~~~~~~~--~~~~-~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d 201 (340)
T 4aow_A 126 -GHTKDVLSVAFS--SDNR-QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 201 (340)
T ss_dssp -CCSSCEEEEEEC--TTSS-CEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEE
T ss_pred -CCCCceeEEEEe--ecCc-cceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEE
Confidence 355566666666 8888 899999999999999876543 44556799999999998843 34688999999999999
Q ss_pred ccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeec
Q 017553 158 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS 237 (369)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (369)
+++++.+..+. +|.+.|++++|+| ++++|++++.|+.|++||+++.. ++..+.
T Consensus 202 ~~~~~~~~~~~---~h~~~v~~~~~s~-~~~~l~s~s~Dg~i~iwd~~~~~-----------------------~~~~~~ 254 (340)
T 4aow_A 202 LANCKLKTNHI---GHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGK-----------------------HLYTLD 254 (340)
T ss_dssp TTTTEEEEEEC---CCSSCEEEEEECT-TSSEEEEEETTCEEEEEETTTTE-----------------------EEEEEE
T ss_pred CCCCceeeEec---CCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEeccCc-----------------------eeeeec
Confidence 99999988887 7999999999999 89999999999999999999832 233333
Q ss_pred cCCCceeeeeee-CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEE
Q 017553 238 VHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF 316 (369)
Q Consensus 238 ~~~~~v~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~ 316 (369)
+...+.++.|+ +..+++++.|+.|++||+++..................|...|++++|+|+++ +|++|+.||.|+
T Consensus 255 -~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~--~l~sgs~Dg~v~ 331 (340)
T 4aow_A 255 -GGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQ--TLFAGYTDNLVR 331 (340)
T ss_dssp -CSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSS--EEEEEETTSCEE
T ss_pred -CCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCC--EEEEEeCCCEEE
Confidence 44678889998 56788888999999999987652111111112233446778899999999996 899999999999
Q ss_pred EEEccCCC
Q 017553 317 VWELQSSP 324 (369)
Q Consensus 317 i~d~~~~~ 324 (369)
+||+.+|+
T Consensus 332 iW~~~tGt 339 (340)
T 4aow_A 332 VWQVTIGT 339 (340)
T ss_dssp EEEEEC--
T ss_pred EEeCCCcC
Confidence 99999874
No 91
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.9e-36 Score=258.40 Aligned_cols=251 Identities=17% Similarity=0.263 Sum_probs=210.1
Q ss_pred eeeeecc-cCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEE
Q 017553 24 RVTNKLQ-EGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFL 101 (369)
Q Consensus 24 ~~~~~~~-~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l 101 (369)
+....+. .|...|++++|+| ++++|++++.++ |++||+.+++.+..+. .|...|.+++|. +. +|
T Consensus 124 ~~~~~~~~~~~~~v~~v~~s~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~~----~~-~l 189 (401)
T 4aez_A 124 SVSALAETDESTYVASVKWSH----DGSFLSVGLGNGLVDIYDVESQTKLRTMA-----GHQARVGCLSWN----RH-VL 189 (401)
T ss_dssp CEEEEEECCTTCCEEEEEECT----TSSEEEEEETTSCEEEEETTTCCEEEEEC-----CCSSCEEEEEEE----TT-EE
T ss_pred cEeEeeecCCCCCEEEEEECC----CCCEEEEECCCCeEEEEECcCCeEEEEec-----CCCCceEEEEEC----CC-EE
Confidence 3334443 3899999999999 689999999888 9999999998887776 578899999984 34 89
Q ss_pred EEeecCCeEEEEEcC-CccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEE
Q 017553 102 VAGGINGIIRVIDVS-NEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSV 180 (369)
Q Consensus 102 ~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~ 180 (369)
++|+.||.|++||+. ....+..+.+|.+.|.+++|+| ++.+|++|+.|+.|++||+++++.+..+. .|...|.++
T Consensus 190 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~---~~~~~v~~~ 265 (401)
T 4aez_A 190 SSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRS-DGLQLASGGNDNVVQIWDARSSIPKFTKT---NHNAAVKAV 265 (401)
T ss_dssp EEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCSSEEEEEC---CCSSCCCEE
T ss_pred EEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEccCCCCCccEEec---CCcceEEEE
Confidence 999999999999998 4566788889999999999999 89999999999999999999999988887 799999999
Q ss_pred EecCCCceEEEEEe--eCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEE-
Q 017553 181 DFHPSDIYRIASCG--MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILS- 255 (369)
Q Consensus 181 ~~~~~~~~~l~~~~--~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~- 255 (369)
+|+|++..++++++ .|+.|++||++++. ++..+ .+...+.+++|+ +.++++
T Consensus 266 ~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~-----------------------~~~~~-~~~~~v~~~~~s~~~~~l~~~ 321 (401)
T 4aez_A 266 AWCPWQSNLLATGGGTMDKQIHFWNAATGA-----------------------RVNTV-DAGSQVTSLIWSPHSKEIMST 321 (401)
T ss_dssp EECTTSTTEEEEECCTTTCEEEEEETTTCC-----------------------EEEEE-ECSSCEEEEEECSSSSEEEEE
T ss_pred EECCCCCCEEEEecCCCCCEEEEEECCCCC-----------------------EEEEE-eCCCcEEEEEECCCCCeEEEE
Confidence 99996667777765 79999999999832 23333 356779999997 778888
Q ss_pred -eecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCc
Q 017553 256 -KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP 325 (369)
Q Consensus 256 -~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~ 325 (369)
|+.||.|++||+.+.+. .....+..|...|.+++|+|+++ +|++++.||.|++||+.+++.
T Consensus 322 ~g~~dg~i~v~~~~~~~~-------~~~~~~~~h~~~v~~~~~s~dg~--~l~s~~~dg~i~iw~~~~~~~ 383 (401)
T 4aez_A 322 HGFPDNNLSIWSYSSSGL-------TKQVDIPAHDTRVLYSALSPDGR--ILSTAASDENLKFWRVYDGDH 383 (401)
T ss_dssp ECTTTCEEEEEEEETTEE-------EEEEEEECCSSCCCEEEECTTSS--EEEEECTTSEEEEEECCC---
T ss_pred eecCCCcEEEEecCCccc-------eeEEEecCCCCCEEEEEECCCCC--EEEEEeCCCcEEEEECCCCcc
Confidence 44899999999987541 13445667889999999999996 999999999999999998853
No 92
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3.3e-37 Score=266.92 Aligned_cols=293 Identities=14% Similarity=0.115 Sum_probs=202.2
Q ss_pred ccccccccccccccccccceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCc
Q 017553 4 TAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDK 82 (369)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~ 82 (369)
+|+|+.+....+.............+.+|.+.|++|+|+|. ++++|++++.|+ |++||+.++.. ..+... ..+
T Consensus 135 lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~---~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~--~~~ 208 (435)
T 4e54_B 135 VAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPL---NTNQFYASSMEGTTRLQDFKGNIL-RVFASS--DTI 208 (435)
T ss_dssp EEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSS---CTTEEEEECSSSCEEEEETTSCEE-EEEECC--SSC
T ss_pred EEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCC---CCCEEEEEeCCCEEEEeeccCCce-eEEecc--CCC
Confidence 56777777666665444444555567899999999999984 478999999999 99999865433 333321 123
Q ss_pred ccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCc
Q 017553 83 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI 162 (369)
Q Consensus 83 ~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 162 (369)
...+.+++|+ |++. +|++|+.||.|++||++ ++.+..+.+|...|.+++|+|.+..+|++|+.|+.|++||+++.+
T Consensus 209 ~~~~~~~~~~--~~~~-~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~ 284 (435)
T 4e54_B 209 NIWFCSLDVS--ASSR-MVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVR 284 (435)
T ss_dssp SCCCCCEEEE--TTTT-EEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCC
T ss_pred CccEEEEEEC--CCCC-EEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEeccccc
Confidence 3455666666 9998 99999999999999985 566788899999999999999556689999999999999999876
Q ss_pred EEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCc
Q 017553 163 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY 242 (369)
Q Consensus 163 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (369)
....+....+|...|++++|+| ++.+|++++.|+.|++||++++......... ...... ....+.........
T Consensus 285 ~~~~~~~~~~h~~~v~~~~~sp-dg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~ 357 (435)
T 4e54_B 285 GKASFLYSLPHRHPVNAACFSP-DGARLLTTDQKSEIRVYSASQWDCPLGLIPH----PHRHFQ--HLTPIKAAWHPRYN 357 (435)
T ss_dssp SSSCCSBCCBCSSCEEECCBCT-TSSEEEEEESSSCEEEEESSSSSSEEEECCC----CCCCCS--SSCCCBCEECSSSS
T ss_pred ccceEEEeeeccccccceeECC-CCCeeEEEcCCCEEEEEECCCCccceEEecc----cccccc--cceeEEEEEcCCCC
Confidence 6555443447999999999999 8999999999999999999985432221100 000000 00000000011111
Q ss_pred eeeeeee--CcEEE-EeecCCeEEEecCCCCCCCCCCCccceeeec-cCCCCCeeEE-EEeecCCccEEEEecCCCeEEE
Q 017553 243 VDCNRWL--GDFIL-SKSVDNEIVLWEPKMKEQSPGEGTADILQKY-PVPECDIWFI-KFSCDFHYNAAAIGNREGKIFV 317 (369)
Q Consensus 243 v~~~~~~--~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~-~~s~~~~~~~l~~~~~dg~i~i 317 (369)
+..+.+. +..++ ++..++.|++||..+++ .+..+ ..|...|.++ +|+|+++ +|++|+ |+.|+|
T Consensus 358 ~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~---------~~~~l~~~~~~~v~s~~~fspdg~--~lasg~-d~~i~i 425 (435)
T 4e54_B 358 LIVVGRYPDPNFKSCTPYELRTIDVFDGNSGK---------MMCQLYDPESSGISSLNEFNPMGD--TLASAM-GYHILI 425 (435)
T ss_dssp CEEEECCCCTTSCCSSTTCCCCEEEECSSSCC---------EEEEECCSSCCCCCCEEEECTTSS--CEEEEC-SSEEEE
T ss_pred EEEEEEcCCCCeEEEEecCCCEEEEEECCCCc---------EEEEEeCCCCCcEEEEEEECCCCC--EEEEEc-CCcEEE
Confidence 1112221 22222 22345679999998876 44443 4566778887 6999996 788776 789999
Q ss_pred EEccCCCc
Q 017553 318 WELQSSPP 325 (369)
Q Consensus 318 ~d~~~~~~ 325 (369)
||+++++.
T Consensus 426 W~~~~gk~ 433 (435)
T 4e54_B 426 WSQQEART 433 (435)
T ss_dssp CCCC----
T ss_pred EECCcCee
Confidence 99998753
No 93
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-37 Score=267.51 Aligned_cols=298 Identities=10% Similarity=0.135 Sum_probs=217.9
Q ss_pred cceeeeeecccCCcCeEEEEEeecc------CCCccEEEEecCCcEEEEEecCCceeEEEeeeccCCcccceeEEEeeec
Q 017553 21 REYRVTNKLQEGKRPLYAVVFNFID------SRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACN 94 (369)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~~~~s~~~------~~~~~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 94 (369)
++++...++..+..-+..+.+.|.- .+++..+++++ .|+ .+++.+..+.. .|...|.+++|+
T Consensus 5 ~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~f~~~~~~~~~~~-----~w~-~~g~~~~~~~~----~h~~~V~~~~~s-- 72 (437)
T 3gre_A 5 HHHHGEGDVESIEKFLSTFKILPPLRDYKEFGPIQEIVRSPN-----MGN-LRGKLIATLME----NEPNSITSSAVS-- 72 (437)
T ss_dssp ---------CCCGGGTTCC-CCCCGGGCGGGCCCCCCCCCCC-----GGG-CCCCEEEEECT----TTTSCEEEEEEE--
T ss_pred ccccCCCChhHHHHHhccCCCCCChhchhhcCCccccccccc-----ccc-ccceEEeeecc----CCCCceEEEEEC--
Confidence 3445555555555555555555521 11455555554 477 56666666622 588999999999
Q ss_pred C-CCccEEEEeecCCeEEEEEcCC---ccccc-eee-ccccceEEEEecCCCCceEEEEeCCCcEEEEEcc---CCcEEE
Q 017553 95 V-DGIPFLVAGGINGIIRVIDVSN---EKLHK-SFV-GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ---TGICIL 165 (369)
Q Consensus 95 ~-~g~~~l~~~~~dg~i~vwd~~~---~~~~~-~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~---~~~~~~ 165 (369)
| ++. +|++|+.||.|++||+.+ +.... .+. .|...|.+++|+| ++.+|++++.||.|++||+. +++.+.
T Consensus 73 ~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 150 (437)
T 3gre_A 73 PGETP-YLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIP-NFDAFAVSSKDGQIIVLKVNHYQQESEVK 150 (437)
T ss_dssp CSSSC-EEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECT-TSSEEEEEETTSEEEEEEEEEEEETTEEE
T ss_pred CCCCC-EEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEEeccccCCceee
Confidence 8 888 999999999999999876 33221 222 5899999999999 89999999999999999995 555544
Q ss_pred Eeecc-------CC--CCCcEEEEE--ecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeeccee
Q 017553 166 IFAGA-------GG--HRNEVLSVD--FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF 234 (369)
Q Consensus 166 ~~~~~-------~~--~~~~v~~~~--~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (369)
.+... .. +...+.++. +++ ++.+|++++.|+.|++||++++ ..+.
T Consensus 151 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~-----------------------~~~~ 206 (437)
T 3gre_A 151 FLNCECIRKINLKNFGKNEYAVRMRAFVNE-EKSLLVALTNLSRVIIFDIRTL-----------------------ERLQ 206 (437)
T ss_dssp EEEEEEEEEEEGGGGSSCCCEEEEEEEECS-SCEEEEEEETTSEEEEEETTTC-----------------------CEEE
T ss_pred ccccceeEEEEccCcccccCceEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCC-----------------------eeeE
Confidence 33310 01 455666666 456 7899999999999999999983 3455
Q ss_pred eecc--CCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeecc-CCCCCeeEEEEeec--CCccEEE
Q 017553 235 IASV--HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP-VPECDIWFIKFSCD--FHYNAAA 307 (369)
Q Consensus 235 ~~~~--~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~s~~--~~~~~l~ 307 (369)
.+.. |...|.+++|+ ++++++++.||.|++||+++++ .+..+. .+...|.+++|+|. ....+|+
T Consensus 207 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~ 277 (437)
T 3gre_A 207 IIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNV---------LIRSWSFGDHAPITHVEVCQFYGKNSVIVV 277 (437)
T ss_dssp EEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTE---------EEEEEBCTTCEEEEEEEECTTTCTTEEEEE
T ss_pred EEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCcc---------EEEEEecCCCCceEEEEeccccCCCccEEE
Confidence 5555 88999999997 7899999999999999999865 556554 56678999977764 1225899
Q ss_pred EecCCCeEEEEEccCCCceeEEEeec----------------------C--CCccceEEEEecCCCCEEEEeecCCeEEE
Q 017553 308 IGNREGKIFVWELQSSPPVLIARLSH----------------------A--QSKSPIRQTAMSYDGSTILSCCEDGAIWR 363 (369)
Q Consensus 308 ~~~~dg~i~i~d~~~~~~~~~~~~~~----------------------~--~~~~~v~~~~~s~~~~~l~s~~~dg~i~v 363 (369)
+++.||.|++||+.+++ ....+.. . .|...|++++|+ ++++|++|+.||.|++
T Consensus 278 s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~ 354 (437)
T 3gre_A 278 GGSSKTFLTIWNFVKGH--CQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVM 354 (437)
T ss_dssp EESTTEEEEEEETTTTE--EEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEE
T ss_pred EEcCCCcEEEEEcCCCc--EEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEE
Confidence 99999999999999884 3333331 1 166789999999 7799999999999999
Q ss_pred EecCC
Q 017553 364 WDAIP 368 (369)
Q Consensus 364 w~~~~ 368 (369)
||+.+
T Consensus 355 wd~~~ 359 (437)
T 3gre_A 355 FSLNE 359 (437)
T ss_dssp EETTC
T ss_pred EECCC
Confidence 99864
No 94
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-37 Score=272.15 Aligned_cols=224 Identities=11% Similarity=0.146 Sum_probs=178.3
Q ss_pred EEeecCCeEEEEEcCCcccc----ceeeccccceEEEEecCC-----CCceEEEEeCCCcEEEEEccCCcE---------
Q 017553 102 VAGGINGIIRVIDVSNEKLH----KSFVGHGDSINEIRTQPL-----KPSLVVSASKDESVRLWNVQTGIC--------- 163 (369)
Q Consensus 102 ~~~~~dg~i~vwd~~~~~~~----~~~~~~~~~v~~~~~~~~-----~~~~l~s~~~dg~i~vwd~~~~~~--------- 163 (369)
++++.|++|+|||+.+++.. ..+..|.+.|.+++|+|. ++.+|++++.||+|++||+.++..
T Consensus 177 aS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~ 256 (524)
T 2j04_B 177 DKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCE 256 (524)
T ss_dssp -----CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCC
T ss_pred ccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeec
Confidence 33557889999999877643 345677889999999993 257999999999999999987642
Q ss_pred --EEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCC
Q 017553 164 --ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN 241 (369)
Q Consensus 164 --~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (369)
...+. +|...|++++|++ ++ .|++|+.||+|++||++++ ..+...+..|..
T Consensus 257 ~p~~~l~---~h~~~v~sv~~s~-~~-~lasgs~DgtV~lWD~~~~----------------------~~~~~~~~~H~~ 309 (524)
T 2j04_B 257 KPSLTLS---LADSLITTFDFLS-PT-TVVCGFKNGFVAEFDLTDP----------------------EVPSFYDQVHDS 309 (524)
T ss_dssp SCSEEEC---CTTTCEEEEEESS-SS-EEEEEETTSEEEEEETTBC----------------------SSCSEEEECSSS
T ss_pred CceEEEE---cCCCCEEEEEecC-CC-eEEEEeCCCEEEEEECCCC----------------------CCceEEeecccc
Confidence 12344 7999999999997 54 7999999999999999862 123455778999
Q ss_pred ceeee--eee--C-cEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCC--CCeeEEEEeecCCccEEEEecCCCe
Q 017553 242 YVDCN--RWL--G-DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPE--CDIWFIKFSCDFHYNAAAIGNREGK 314 (369)
Q Consensus 242 ~v~~~--~~~--~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~s~~~~~~~l~~~~~dg~ 314 (369)
.|.++ .|+ + .+|++++.|++|++||+++.+ .+..+..+. ..+.+++|+|+++ .+++++.|+.
T Consensus 310 ~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~---------~~~~~~~~~~~~~v~~v~fsp~~~--~l~s~~~d~t 378 (524)
T 2j04_B 310 YILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIA---------TTKTTVSRFRGSNLVPVVYCPQIY--SYIYSDGASS 378 (524)
T ss_dssp CEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHH---------HHCEEEEECSCCSCCCEEEETTTT--EEEEECSSSE
T ss_pred cEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCC---------cccccccccccCcccceEeCCCcC--eEEEeCCCCc
Confidence 99999 455 4 689999999999999998765 233333332 3478899999986 7899999999
Q ss_pred EEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecC
Q 017553 315 IFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 315 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 367 (369)
|++||++++.. ...+. +|.+.|++++|+|+|++|++|+.||+|++||+.
T Consensus 379 v~lwd~~~~~~--~~~l~--gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~ 427 (524)
T 2j04_B 379 LRAVPSRAAFA--VHPLV--SRETTITAIGVSRLHPMVLAGSADGSLIITNAA 427 (524)
T ss_dssp EEEEETTCTTC--CEEEE--ECSSCEEEEECCSSCCBCEEEETTTEEECCBSC
T ss_pred EEEEECccccc--ceeee--cCCCceEEEEeCCCCCeEEEEECCCEEEEEech
Confidence 99999998753 33455 788999999999999999999999999999974
No 95
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.9e-36 Score=255.62 Aligned_cols=261 Identities=13% Similarity=0.173 Sum_probs=209.8
Q ss_pred cCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCc-eeEEEeeeccCCcccceeEEEee----ecCCCccEEEEe
Q 017553 31 EGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG-VIAALQSYVDEDKEESFYTVSWA----CNVDGIPFLVAG 104 (369)
Q Consensus 31 ~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~----~~~~g~~~l~~~ 104 (369)
+|..+|++++|+|+. .++++|++++.++ |++||+.+++ .+..+. .|...|.+++|. ++|+++ +|+++
T Consensus 63 ~~~~~v~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~s~~~~-~l~~~ 135 (357)
T 3i2n_A 63 EKAKPIKCGTFGATS-LQQRYLATGDFGGNLHIWNLEAPEMPVYSVK-----GHKEIINAIDGIGGLGIGEGAP-EIVTG 135 (357)
T ss_dssp EESSCEEEEECTTCC-TTTCCEEEEETTSCEEEECTTSCSSCSEEEC-----CCSSCEEEEEEESGGGCC-CCC-EEEEE
T ss_pred cccCcEEEEEEcCCC-CCCceEEEecCCCeEEEEeCCCCCccEEEEE-----ecccceEEEeeccccccCCCcc-EEEEE
Confidence 789999999999931 1269999999888 9999998887 666665 578899999774 468898 99999
Q ss_pred ecCCeEEEEEcCCcc-ccceeecccc----ceEEEE----ecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCC
Q 017553 105 GINGIIRVIDVSNEK-LHKSFVGHGD----SINEIR----TQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRN 175 (369)
Q Consensus 105 ~~dg~i~vwd~~~~~-~~~~~~~~~~----~v~~~~----~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 175 (369)
+.||.|++||+.+++ .+..+..|.+ .+.+++ |+| ++.+|++++.||.|++||+++++..... .|..
T Consensus 136 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~----~~~~ 210 (357)
T 3i2n_A 136 SRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRNMALRWET----NIKN 210 (357)
T ss_dssp ETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC--CCCEEEEEETTSEEEEEETTTTEEEEEE----ECSS
T ss_pred eCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCC-CCCEEEEEccCCeEEEEECccCceeeec----CCCC
Confidence 999999999999887 6777766554 889998 778 8899999999999999999999876655 4899
Q ss_pred cEEEEEecCC--CceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--Cc
Q 017553 176 EVLSVDFHPS--DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GD 251 (369)
Q Consensus 176 ~v~~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~ 251 (369)
.|.+++|+|. ++.++++++.||.|++||+++..... .........|...|.+++|+ +.
T Consensus 211 ~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~ 272 (357)
T 3i2n_A 211 GVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTK------------------GFASVSEKAHKSTVWQVRHLPQNR 272 (357)
T ss_dssp CEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTT------------------EEEEEEEECCSSCEEEEEEETTEE
T ss_pred ceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCccc------------------ceeeeccCCCcCCEEEEEECCCCC
Confidence 9999999984 56789999999999999998732110 01122345899999999998 44
Q ss_pred -EEEEeecCCeEEEecCCCCCCCCC----------CCccceeeeccCCCCCeeEEEEeecCCccEEE-EecCCCeEEEEE
Q 017553 252 -FILSKSVDNEIVLWEPKMKEQSPG----------EGTADILQKYPVPECDIWFIKFSCDFHYNAAA-IGNREGKIFVWE 319 (369)
Q Consensus 252 -~l~~~~~d~~i~i~d~~~~~~~~~----------~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~-~~~~dg~i~i~d 319 (369)
++++++.||.|++||++....... ......+..+..|...|.+++|+|+++ +|+ +++.||.|++||
T Consensus 273 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~s~~~d~~i~iw~ 350 (357)
T 3i2n_A 273 ELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKR--GLCVCSSFDQTVRVLI 350 (357)
T ss_dssp EEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSST--TEEEEEETTSEEEEEE
T ss_pred cEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCC--eEEEEecCCCcEEEEE
Confidence 799999999999999987653211 112246777888899999999999997 566 899999999999
Q ss_pred ccCC
Q 017553 320 LQSS 323 (369)
Q Consensus 320 ~~~~ 323 (369)
+.+.
T Consensus 351 ~~~~ 354 (357)
T 3i2n_A 351 VTKL 354 (357)
T ss_dssp ECC-
T ss_pred CCCc
Confidence 9875
No 96
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.5e-36 Score=257.14 Aligned_cols=255 Identities=17% Similarity=0.252 Sum_probs=208.5
Q ss_pred CcccceeEEEeeec-CCCccEEEEeecCCeEEEEEcCCccccceeec-----cccceEEEEecCCC----CceEEEEeCC
Q 017553 81 DKEESFYTVSWACN-VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG-----HGDSINEIRTQPLK----PSLVVSASKD 150 (369)
Q Consensus 81 ~~~~~v~~~~~~~~-~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~----~~~l~s~~~d 150 (369)
.|...|.+++|++. +++...+++++.++.|++||+.+++.+..+.. |...|.+++|+| + +.+|++|+.|
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~~~d 94 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTY-DSNTSHPLLAVAGSR 94 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEE-CTTTCCEEEEEEETT
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEecc-CCCCCCCEEEEecCC
Confidence 68899999999932 12444788888888999999998887777765 447799999999 5 5699999999
Q ss_pred CcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceee
Q 017553 151 ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQ 230 (369)
Q Consensus 151 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (369)
|.|++||+.+++.+..+. +|...|.+++|+|.++.+|++++.||.|++||+++++
T Consensus 95 g~i~v~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---------------------- 149 (366)
T 3k26_A 95 GIIRIINPITMQCIKHYV---GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT---------------------- 149 (366)
T ss_dssp CEEEEECTTTCCEEEEEE---SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTE----------------------
T ss_pred CEEEEEEchhceEeeeec---CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCe----------------------
Confidence 999999999999999888 7999999999999678899999999999999999842
Q ss_pred cceeee---ccCCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCC-------------------Cccceeeecc
Q 017553 231 FPVFIA---SVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGE-------------------GTADILQKYP 286 (369)
Q Consensus 231 ~~~~~~---~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~-------------------~~~~~~~~~~ 286 (369)
.+..+ ..|...|.+++|+ ++++++++.|+.|++||+++.+..... ..........
T Consensus 150 -~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (366)
T 3k26_A 150 -LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRD 228 (366)
T ss_dssp -EEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECS
T ss_pred -EEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcccccc
Confidence 23333 6799999999998 779999999999999999876421000 0001122333
Q ss_pred CCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCc------------eeEEEeecCCCccceEEEEecCC--CCEE
Q 017553 287 VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP------------VLIARLSHAQSKSPIRQTAMSYD--GSTI 352 (369)
Q Consensus 287 ~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~------------~~~~~~~~~~~~~~v~~~~~s~~--~~~l 352 (369)
.|...|.+++|+ ++ ++++++.||.|++||+.+... ..+..+. .|...|++++|+|+ +++|
T Consensus 229 ~~~~~v~~~~~~--~~--~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~~l 302 (366)
T 3k26_A 229 IHRNYVDCVRWL--GD--LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFD--YSQCDIWYMRFSMDFWQKML 302 (366)
T ss_dssp SCSSCCCEEEEE--TT--EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEE--CSSCCSSCCCCEECTTSSEE
T ss_pred CCcceEEEEEEc--CC--EEEEEecCCEEEEEeCCCccccccccccCCcchheecccc--ccCCcEEEEEEcCCCCCcEE
Confidence 478899999998 43 899999999999999987654 3455555 77889999999999 9999
Q ss_pred EEeecCCeEEEEecCC
Q 017553 353 LSCCEDGAIWRWDAIP 368 (369)
Q Consensus 353 ~s~~~dg~i~vw~~~~ 368 (369)
++|+.||.|++||+.+
T Consensus 303 ~~~~~dg~i~vwd~~~ 318 (366)
T 3k26_A 303 ALGNQVGKLYVWDLEV 318 (366)
T ss_dssp EEECTTSCEEEEECCS
T ss_pred EEEecCCcEEEEECCC
Confidence 9999999999999875
No 97
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=9.5e-36 Score=253.87 Aligned_cols=284 Identities=14% Similarity=0.122 Sum_probs=209.0
Q ss_pred ccccccccccccccccccceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCc
Q 017553 4 TAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDK 82 (369)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~ 82 (369)
+++++.+....+.............+.+|...|++++|+|. ++++|++++.|+ |++||+.+ .....+..+. .+
T Consensus 89 l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~--~~ 162 (383)
T 3ei3_B 89 VAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQF---NTNQLFVSSIRGATTLRDFSG-SVIQVFAKTD--SW 162 (383)
T ss_dssp EEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETT---EEEEEEEEETTTEEEEEETTS-CEEEEEECCC--CS
T ss_pred EEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCC---CCCEEEEEeCCCEEEEEECCC-CceEEEeccC--CC
Confidence 55666665555554444444444444589999999999994 368999999988 99999875 5555554322 35
Q ss_pred ccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCc-eEEEEeCCCcEEEEEccC-
Q 017553 83 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPS-LVVSASKDESVRLWNVQT- 160 (369)
Q Consensus 83 ~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~dg~i~vwd~~~- 160 (369)
...|.+++|+ |++. +|++|+.||.|++||+ +++.+..+.+|...|.+++|+| ++. +|++++.|+.|++||+++
T Consensus 163 ~~~v~~~~~~--~~~~-~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~ 237 (383)
T 3ei3_B 163 DYWYCCVDVS--VSRQ-MLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP-RCDWLMATSSVDATVKLWDLRNI 237 (383)
T ss_dssp SCCEEEEEEE--TTTT-EEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECS-SCTTEEEEEETTSEEEEEEGGGC
T ss_pred CCCeEEEEEC--CCCC-EEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECC-CCCCEEEEEeCCCEEEEEeCCCC
Confidence 5789999998 8998 9999999999999998 5778889999999999999999 666 999999999999999998
Q ss_pred ---CcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeec
Q 017553 161 ---GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS 237 (369)
Q Consensus 161 ---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (369)
+..+..+. |...|.+++|+|.++.+|++++.|+.|++||++++............... . ..++...-
T Consensus 238 ~~~~~~~~~~~----~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~ 307 (383)
T 3ei3_B 238 KDKNSYIAEMP----HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQ--H----LTPIKATW 307 (383)
T ss_dssp CSTTCEEEEEE----CSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCT--T----SCCCCCEE
T ss_pred CcccceEEEec----CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccc--c----ccceEEec
Confidence 66666664 99999999999866788999999999999999985432211100000000 0 00000001
Q ss_pred cCCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccC--CCCCeeEEEEeecCCccEEEEecCCC
Q 017553 238 VHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV--PECDIWFIKFSCDFHYNAAAIGNREG 313 (369)
Q Consensus 238 ~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~s~~~~~~~l~~~~~dg 313 (369)
.....+..+.|+ +++ +++.|+.|++||+.+++ .+..+.. +...+..++|+|+++ +|++++ ||
T Consensus 308 ~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~---------~~~~l~~~~~~~~~~~~~~s~~g~--~l~s~s-d~ 373 (383)
T 3ei3_B 308 HPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGG---------LVHQLRDPNAAGIISLNKFSPTGD--VLASGM-GF 373 (383)
T ss_dssp CSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCC---------EEEEECBTTBCSCCCEEEECTTSS--EEEEEE-TT
T ss_pred cCCCCceEEEecCCccc--ccCCCCeEEEEecCCCc---------eeeeecCCCCCceEEEEEEecCcc--EEEEec-CC
Confidence 112334445554 444 78899999999998876 5666655 456677789999996 888886 99
Q ss_pred eEEEEEccC
Q 017553 314 KIFVWELQS 322 (369)
Q Consensus 314 ~i~i~d~~~ 322 (369)
.|++||+++
T Consensus 374 ~i~iw~~~~ 382 (383)
T 3ei3_B 374 NILIWNRED 382 (383)
T ss_dssp EEEEEECC-
T ss_pred cEEEEecCC
Confidence 999999875
No 98
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.9e-35 Score=247.56 Aligned_cols=252 Identities=17% Similarity=0.241 Sum_probs=215.5
Q ss_pred CcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccC
Q 017553 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 160 (369)
Q Consensus 81 ~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 160 (369)
.|...|.+++|+ |+++ +|++++.||.|++||+.+++.+..+.+|...|.+++|+| ++++|++++.||.|++||+.+
T Consensus 30 ~h~~~v~~~~~s--~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~ 105 (369)
T 3zwl_B 30 GHERPLTQVKYN--KEGD-LLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDC-FTKYCVTGSADYSIKLWDVSN 105 (369)
T ss_dssp CCSSCEEEEEEC--TTSC-EEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTT
T ss_pred EeeceEEEEEEc--CCCC-EEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCC
Confidence 688999999998 8998 999999999999999999999999999999999999999 899999999999999999999
Q ss_pred CcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeC-----CcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceee
Q 017553 161 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD-----NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI 235 (369)
Q Consensus 161 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (369)
++.+..+. +...|.+++|+| ++.++++++.+ +.|++||++.......... ....+...
T Consensus 106 ~~~~~~~~----~~~~v~~~~~~~-~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~------------~~~~~~~~ 168 (369)
T 3zwl_B 106 GQCVATWK----SPVPVKRVEFSP-CGNYFLAILDNVMKNPGSINIYEIERDSATHELTK------------VSEEPIHK 168 (369)
T ss_dssp CCEEEEEE----CSSCEEEEEECT-TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEE------------ECSSCSEE
T ss_pred CcEEEEee----cCCCeEEEEEcc-CCCEEEEecCCccCCCCEEEEEEecCCccceeecc------------cccceeee
Confidence 99998887 888999999999 88999999998 9999999987432111110 01123445
Q ss_pred eccCCC--ceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecC
Q 017553 236 ASVHSN--YVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR 311 (369)
Q Consensus 236 ~~~~~~--~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~ 311 (369)
+..|.. .+.+++|+ ++++++++.|+.|++||+++... .+..+..+...+.+++|+|+++ +|++++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~ 238 (369)
T 3zwl_B 169 IITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYE--------YVDSIDLHEKSISDMQFSPDLT--YFITSSR 238 (369)
T ss_dssp EECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTE--------EEEEEECCSSCEEEEEECTTSS--EEEEEET
T ss_pred ccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcE--------eEEEEecCCCceeEEEECCCCC--EEEEecC
Confidence 556666 89999997 77999999999999999987321 6777788889999999999986 8999999
Q ss_pred CCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCC--------------eEEEEecCC
Q 017553 312 EGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDG--------------AIWRWDAIP 368 (369)
Q Consensus 312 dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg--------------~i~vw~~~~ 368 (369)
||.|++||+.+++ ....+. +...+..++|+|+++++++++.++ .+++||+.+
T Consensus 239 d~~i~v~d~~~~~--~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 304 (369)
T 3zwl_B 239 DTNSFLVDVSTLQ--VLKKYE---TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIF 304 (369)
T ss_dssp TSEEEEEETTTCC--EEEEEE---CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTT
T ss_pred CceEEEEECCCCc--eeeeec---CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCC
Confidence 9999999999885 444443 347899999999999999999998 899999864
No 99
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=3e-35 Score=253.57 Aligned_cols=246 Identities=17% Similarity=0.251 Sum_probs=204.9
Q ss_pred eecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEee
Q 017553 27 NKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG 105 (369)
Q Consensus 27 ~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~ 105 (369)
..+.+|...|++|+|+| +|++||+|+.|+ |+|||+.+++.+..+. .|...+.++++. +. +|++|+
T Consensus 141 ~~~~~~~~~V~sv~fsp----dg~~lasgs~Dg~v~iWd~~~~~~~~~~~-----~h~~~v~~~s~~----~~-~l~sgs 206 (420)
T 4gga_A 141 LQMEQPGEYISSVAWIK----EGNYLAVGTSSAEVQLWDVQQQKRLRNMT-----SHSARVGSLSWN----SY-ILSSGS 206 (420)
T ss_dssp EECCSTTCCEEEEEECT----TSSEEEEEETTSCEEEEETTTTEEEEEEC-----CCSSCEEEEEEE----TT-EEEEEE
T ss_pred EEecCCCCcEEEEEECC----CCCEEEEEECCCeEEEEEcCCCcEEEEEe-----CCCCceEEEeeC----CC-EEEEEe
Confidence 34568889999999999 689999999999 9999999998888776 477778777664 45 899999
Q ss_pred cCCeEEEEEcCCc-cccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcE----EEEeeccCCCCCcEEEE
Q 017553 106 INGIIRVIDVSNE-KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC----ILIFAGAGGHRNEVLSV 180 (369)
Q Consensus 106 ~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~~~~~v~~~ 180 (369)
.|+.+++||.... ..+..+.+|...+..+.|+| ++.++++++.|+.|++|+..+++. +.... .|...|.++
T Consensus 207 ~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~-~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~---~~~~~V~~~ 282 (420)
T 4gga_A 207 RSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT---QHQGAVKAV 282 (420)
T ss_dssp TTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCCSSCSCCSEEEC---CCSSCEEEE
T ss_pred CCCceeEeeecccceeeEEecccccceeeeeecC-CCCeeeeeeccccceEEeeccccccceeeeeec---ccCCceeee
Confidence 9999999998764 45677889999999999999 899999999999999999987653 33344 699999999
Q ss_pred EecCCCceEEEEE--eeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEe
Q 017553 181 DFHPSDIYRIASC--GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSK 256 (369)
Q Consensus 181 ~~~~~~~~~l~~~--~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~ 256 (369)
+|+|.+..+++++ +.|++|++||++++. ....+. +...+.++.|+ ++.++++
T Consensus 283 ~~~p~~~~~la~~~gs~D~~I~iwd~~t~~-----------------------~~~~~~-~~~~v~~~~~~~~~~~lv~~ 338 (420)
T 4gga_A 283 AWCPWQSNVLATGGGTSDRHIRIWNVCSGA-----------------------CLSAVD-AHSQVCSILWSPHYKELISG 338 (420)
T ss_dssp EECTTCTTEEEEEECTTTCEEEEEETTTTE-----------------------EEEEEE-CSSCEEEEEEETTTTEEEEE
T ss_pred eeCCCcccEEEEEeecCCCEEEEEeCCccc-----------------------cceeec-cccceeeeeecCCCCeEEEE
Confidence 9999777777764 479999999999843 233333 34557777776 6666665
Q ss_pred e--cCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCc
Q 017553 257 S--VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP 325 (369)
Q Consensus 257 ~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~ 325 (369)
+ .|+.|++||+.+++ .+..+.+|...|++++|+|+++ +|++|+.|++|+|||+....+
T Consensus 339 sg~~d~~I~iwd~~~~~---------~v~~l~gH~~~V~~l~~spdg~--~l~S~s~D~tvriWdv~~~~~ 398 (420)
T 4gga_A 339 HGFAQNQLVIWKYPTMA---------KVAELKGHTSRVLSLTMSPDGA--TVASAAADETLRLWRCFELDP 398 (420)
T ss_dssp ECTTTCCEEEEETTTCC---------EEEEECCCSSCEEEEEECTTSS--CEEEEETTTEEEEECCSCSSC
T ss_pred EecCCCEEEEEECCCCc---------EEEEEcCCCCCEEEEEEcCCCC--EEEEEecCCeEEEEECCCCCc
Confidence 4 79999999999876 7888999999999999999996 899999999999999987643
No 100
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-36 Score=280.31 Aligned_cols=252 Identities=17% Similarity=0.211 Sum_probs=213.7
Q ss_pred CcccceeEEEeeecCCCccEEEEeecCCeEEEEEcC--CccccceeeccccceEEEEecCCC--CceEEEEeCCCcEEEE
Q 017553 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVS--NEKLHKSFVGHGDSINEIRTQPLK--PSLVVSASKDESVRLW 156 (369)
Q Consensus 81 ~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~--~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~dg~i~vw 156 (369)
.|.+.|++++|+ |+|+ +|++|+.||.|++||+. +++.+..+.+|.+.|.+++|+| + +++|++|+.||.|++|
T Consensus 7 gH~~~V~~l~~s--~dg~-~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~-~~~~~~l~s~s~Dg~I~vw 82 (753)
T 3jro_A 7 AHNELIHDAVLD--YYGK-RLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKVLIW 82 (753)
T ss_dssp -CCCCEEEECCC--SSSC-CEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECC-TTSCSEEEEEETTSCEEEE
T ss_pred cCcceeEEEEEC--CCCC-eEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecC-CCCCCEEEEEeCCCeEEEE
Confidence 688999999998 8898 99999999999999998 5677888999999999999998 5 8899999999999999
Q ss_pred EccCCc--EEEEeeccCCCCCcEEEEEecCCC--ceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecc
Q 017553 157 NVQTGI--CILIFAGAGGHRNEVLSVDFHPSD--IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP 232 (369)
Q Consensus 157 d~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (369)
|+.+++ .+..+. +|...|.+++|+| + +..+++++.||.|++||++.... ..
T Consensus 83 d~~~~~~~~~~~~~---~h~~~V~~v~~sp-~~~~~~l~sgs~dg~I~vwdl~~~~~---------------------~~ 137 (753)
T 3jro_A 83 KEENGRWSQIAVHA---VHSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGT---------------------TS 137 (753)
T ss_dssp EEETTEEEEEEEEC---CCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEECCSSSC---------------------CC
T ss_pred ECCCCccccccccc---CCCCCeEEEEECC-CCCCCEEEEEeCCCcEEEEEeecCCC---------------------cc
Confidence 999886 555555 7999999999999 6 88999999999999999988321 22
Q ss_pred eeeeccCCCceeeeeeeC---------------cEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEE
Q 017553 233 VFIASVHSNYVDCNRWLG---------------DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKF 297 (369)
Q Consensus 233 ~~~~~~~~~~v~~~~~~~---------------~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 297 (369)
......|...|.++.|++ .++++++.||.|++||+++... .......+..|...|.+++|
T Consensus 138 ~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~-----~~~~~~~~~~h~~~V~~l~~ 212 (753)
T 3jro_A 138 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ-----TYVLESTLEGHSDWVRDVAW 212 (753)
T ss_dssp CEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTT-----EEEEEEEECCCSSCEEEEEE
T ss_pred eeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcc-----cceeeeeecCCCCcEEEEEe
Confidence 345567899999999963 6899999999999999987642 22356677888999999999
Q ss_pred eec---CCccEEEEecCCCeEEEEEccCCCceeEEE-eecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 298 SCD---FHYNAAAIGNREGKIFVWELQSSPPVLIAR-LSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 298 s~~---~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
+|+ ++ ++++++.||.|++||+.++....... .....|...|++++|+|+|++|++|+.||.|++|++.+
T Consensus 213 sp~~~~~~--~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 213 SPTVLLRS--YLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp CCCCSSSE--EEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred ccCCCCCC--EEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 999 64 99999999999999999874322222 22336778999999999999999999999999999874
No 101
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-35 Score=256.86 Aligned_cols=272 Identities=15% Similarity=0.194 Sum_probs=203.4
Q ss_pred EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEc----CCcc------ccceeec---
Q 017553 60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDV----SNEK------LHKSFVG--- 126 (369)
Q Consensus 60 v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~----~~~~------~~~~~~~--- 126 (369)
+.+|++..... .+..+ .|...|.+++|+ |+|+.+|++|+.||.|++|++ .+++ ....+..
T Consensus 27 ~~~~~~~~~~~--~~~~~---~~~~~v~~~~~s--~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (425)
T 1r5m_A 27 DSSDDLDGFVK--ILKEI---VKLDNIVSSTWN--PLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFA 99 (425)
T ss_dssp -------CCCE--ECEEE---EECSCCSEEEEC--SSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCC
T ss_pred cccccchhhhh--heeee---eccCceEEEEEC--CCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccccc
Confidence 56777654433 23322 466899999998 888668999999999999999 8777 3444443
Q ss_pred -------cccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcE
Q 017553 127 -------HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTV 199 (369)
Q Consensus 127 -------~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v 199 (369)
|.+.|.+++|+| ++.+|++++.||.|++|| .+++.+..+. +|...|.+++|+| ++.+|++++.|+.|
T Consensus 100 ~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~~-~~~~~~~~~~---~~~~~v~~~~~~~-~~~~l~~~~~d~~i 173 (425)
T 1r5m_A 100 LSASSGKTTNQVTCLAWSH-DGNSIVTGVENGELRLWN-KTGALLNVLN---FHRAPIVSVKWNK-DGTHIISMDVENVT 173 (425)
T ss_dssp CC------CBCEEEEEECT-TSSEEEEEETTSCEEEEE-TTSCEEEEEC---CCCSCEEEEEECT-TSSEEEEEETTCCE
T ss_pred ccccccCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEe-CCCCeeeecc---CCCccEEEEEECC-CCCEEEEEecCCeE
Confidence 678999999999 899999999999999999 6777888887 7999999999999 88999999999999
Q ss_pred EEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee-CcEEEEeecCCeEEEecCCCCCCCCCCCc
Q 017553 200 KIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGT 278 (369)
Q Consensus 200 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 278 (369)
++||++++............. ..............+.++.|+ +..+++++.++.|++||+++.+
T Consensus 174 ~iwd~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~------- 238 (425)
T 1r5m_A 174 ILWNVISGTVMQHFELKETGG--------SSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKT------- 238 (425)
T ss_dssp EEEETTTTEEEEEECCC-----------------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSS-------
T ss_pred EEEECCCCcEEEEeeccccCc--------cceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCc-------
Confidence 999998854322111000000 000000111122228888887 7789999999999999999875
Q ss_pred cceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecC
Q 017553 279 ADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCED 358 (369)
Q Consensus 279 ~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 358 (369)
.+..+..|...+.+++|+|+++ +|++++.||.|++||+.+++. ...+. .|...|.+++|+|++ +|++++.|
T Consensus 239 --~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~--~~~~~--~~~~~i~~~~~~~~~-~l~~~~~d 309 (425)
T 1r5m_A 239 --PTGKLIGHHGPISVLEFNDTNK--LLLSASDDGTLRIWHGGNGNS--QNCFY--GHSQSIVSASWVGDD-KVISCSMD 309 (425)
T ss_dssp --CSEEECCCSSCEEEEEEETTTT--EEEEEETTSCEEEECSSSBSC--SEEEC--CCSSCEEEEEEETTT-EEEEEETT
T ss_pred --eeeeeccCCCceEEEEECCCCC--EEEEEcCCCEEEEEECCCCcc--ceEec--CCCccEEEEEECCCC-EEEEEeCC
Confidence 5666777889999999999996 899999999999999998753 34444 677899999999999 99999999
Q ss_pred CeEEEEecCC
Q 017553 359 GAIWRWDAIP 368 (369)
Q Consensus 359 g~i~vw~~~~ 368 (369)
|.|++||+.+
T Consensus 310 ~~i~i~d~~~ 319 (425)
T 1r5m_A 310 GSVRLWSLKQ 319 (425)
T ss_dssp SEEEEEETTT
T ss_pred CcEEEEECCC
Confidence 9999999864
No 102
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.5e-35 Score=256.68 Aligned_cols=267 Identities=18% Similarity=0.319 Sum_probs=219.8
Q ss_pred ccccccccccccccccccceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCc
Q 017553 4 TAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDK 82 (369)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~ 82 (369)
+++|+.+....+. +....+....+.+|.+.|.+++|. +++|++|+.|+ |++||+.+++.+..+. .|
T Consensus 146 l~~g~~dg~i~iw--d~~~~~~~~~~~~h~~~v~~l~~~------~~~l~sg~~dg~i~vwd~~~~~~~~~~~-----~h 212 (435)
T 1p22_A 146 IVSGLRDNTIKIW--DKNTLECKRILTGHTGSVLCLQYD------ERVIITGSSDSTVRVWDVNTGEMLNTLI-----HH 212 (435)
T ss_dssp EEEEESSSCEEEE--ESSSCCEEEEECCCSSCEEEEECC------SSEEEEEETTSCEEEEESSSCCEEEEEC-----CC
T ss_pred EEEEeCCCeEEEE--eCCCCeEEEEEcCCCCcEEEEEEC------CCEEEEEcCCCeEEEEECCCCcEEEEEc-----CC
Confidence 3455555544443 345566777889999999999983 58999999998 9999999998887776 57
Q ss_pred ccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCcccc---ceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEcc
Q 017553 83 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLH---KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 159 (369)
Q Consensus 83 ~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~ 159 (369)
...|.+++|. +. ++++|+.||.|++||+.+++.. ..+.+|...|.+++| ++++|++|+.||.|++||++
T Consensus 213 ~~~v~~l~~~----~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~s~~~dg~i~vwd~~ 284 (435)
T 1p22_A 213 CEAVLHLRFN----NG-MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWNTS 284 (435)
T ss_dssp CSCEEEEECC----TT-EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE---ETTEEEEEETTSEEEEEETT
T ss_pred CCcEEEEEEc----CC-EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe---CCCEEEEEeCCCeEEEEECC
Confidence 7889999885 33 8999999999999999888765 677789999999999 45799999999999999999
Q ss_pred CCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccC
Q 017553 160 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH 239 (369)
Q Consensus 160 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (369)
+++.+..+. +|...|.++.++ +.++++|+.||.|++||+++ ...+..+..|
T Consensus 285 ~~~~~~~~~---~~~~~v~~~~~~---~~~l~~g~~dg~i~iwd~~~-----------------------~~~~~~~~~h 335 (435)
T 1p22_A 285 TCEFVRTLN---GHKRGIACLQYR---DRLVVSGSSDNTIRLWDIEC-----------------------GACLRVLEGH 335 (435)
T ss_dssp TCCEEEEEE---CCSSCEEEEEEE---TTEEEEEETTSCEEEEETTT-----------------------CCEEEEECCC
T ss_pred cCcEEEEEc---CCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCC-----------------------CCEEEEEeCC
Confidence 999999988 799999999995 46899999999999999998 3456677889
Q ss_pred CCceeeeeeeCcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEE
Q 017553 240 SNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE 319 (369)
Q Consensus 240 ~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d 319 (369)
...|.++.|+++++++++.||.|++||+++............+..+..|...|.+++| ++. +|++++.||.|++||
T Consensus 336 ~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~--~l~s~s~Dg~i~iwd 411 (435)
T 1p22_A 336 EELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEF--QIVSSSHDDTILIWD 411 (435)
T ss_dssp SSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSS--CEEECCSSSEEEEEC
T ss_pred cCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCC--EEEEEeCCCEEEEEE
Confidence 9999999999999999999999999999876533222222357778889999999999 454 799999999999999
Q ss_pred ccCCC
Q 017553 320 LQSSP 324 (369)
Q Consensus 320 ~~~~~ 324 (369)
+.+..
T Consensus 412 ~~~~~ 416 (435)
T 1p22_A 412 FLNDP 416 (435)
T ss_dssp -----
T ss_pred CCCCC
Confidence 98874
No 103
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.5e-36 Score=262.83 Aligned_cols=253 Identities=16% Similarity=0.223 Sum_probs=196.8
Q ss_pred CcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCcc-----------ccceeeccc------------cceEEEEec
Q 017553 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK-----------LHKSFVGHG------------DSINEIRTQ 137 (369)
Q Consensus 81 ~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~-----------~~~~~~~~~------------~~v~~~~~~ 137 (369)
.+.+.|.+++|+ |+|. +|++|+.||.|++||+.+++ ....+.+|. ..|.+++|+
T Consensus 26 ~~~~~V~~v~~s--~~g~-~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~ 102 (447)
T 3dw8_B 26 AEADIISTVEFN--HSGE-LLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL 102 (447)
T ss_dssp CGGGSEEEEEEC--SSSS-EEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEEC
T ss_pred cccCcEEEEEEC--CCCC-EEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEc
Confidence 467899999998 8998 99999999999999998876 477888998 889999999
Q ss_pred CCCC--ceEEEEeCCCcEEEEEccCCcEEE---------------------------------------EeeccCCCCCc
Q 017553 138 PLKP--SLVVSASKDESVRLWNVQTGICIL---------------------------------------IFAGAGGHRNE 176 (369)
Q Consensus 138 ~~~~--~~l~s~~~dg~i~vwd~~~~~~~~---------------------------------------~~~~~~~~~~~ 176 (369)
| ++ ..|++++.|+.|++||+.+++... .+ ..+|...
T Consensus 103 ~-~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~ 179 (447)
T 3dw8_B 103 P-QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIF--ANAHTYH 179 (447)
T ss_dssp C-CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEE--CSCCSSC
T ss_pred C-CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEe--ccCCCcc
Confidence 9 65 789999999999999998754321 11 1279999
Q ss_pred EEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--C-cEE
Q 017553 177 VLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--G-DFI 253 (369)
Q Consensus 177 v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l 253 (369)
|.+++|+| ++.+|++| .|+.|++||++......... ......+..|...|.+++|+ + +++
T Consensus 180 v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~---------------~~~~~~~~~~~~~v~~~~~~p~~~~~l 242 (447)
T 3dw8_B 180 INSISINS-DYETYLSA-DDLRINLWHLEITDRSFNIV---------------DIKPANMEELTEVITAAEFHPNSCNTF 242 (447)
T ss_dssp CCEEEECT-TSSEEEEE-CSSEEEEEETTEEEEEEEEE---------------ECCCSSGGGCCCCEEEEEECSSCTTEE
T ss_pred eEEEEEcC-CCCEEEEe-CCCeEEEEECCCCCceeeee---------------ecccccccccCcceEEEEECCCCCcEE
Confidence 99999999 88999998 79999999998532111100 00011356789999999998 4 799
Q ss_pred EEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCC------------CeeEEEEeecCCccEEEEecCCCeEEEEEcc
Q 017553 254 LSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPEC------------DIWFIKFSCDFHYNAAAIGNREGKIFVWELQ 321 (369)
Q Consensus 254 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~------------~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~ 321 (369)
++++.|+.|++||+++.+... ..+..+..+.. .|.+++|+|+++ +|++++. +.|++||+.
T Consensus 243 ~s~~~dg~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~--~l~~~~~-~~v~iwd~~ 314 (447)
T 3dw8_B 243 VYSSSKGTIRLCDMRASALCD-----RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGR--YMMTRDY-LSVKVWDLN 314 (447)
T ss_dssp EEEETTSCEEEEETTTCSSSC-----TTCEEECCC-----CCHHHHHTTCEEEEEECTTSS--EEEEEES-SEEEEEETT
T ss_pred EEEeCCCeEEEEECcCCcccc-----ceeeEeccCCCccccccccccCceEEEEEECCCCC--EEEEeeC-CeEEEEeCC
Confidence 999999999999999876311 11344555544 899999999996 8888888 999999998
Q ss_pred C-CCceeEEEeecCCCccc---------------eEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 322 S-SPPVLIARLSHAQSKSP---------------IRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 322 ~-~~~~~~~~~~~~~~~~~---------------v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
. ++ .+..+. +|... +..++|+|++++|++|+.||.|++||+.+
T Consensus 315 ~~~~--~~~~~~--~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~ 373 (447)
T 3dw8_B 315 MENR--PVETYQ--VHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNT 373 (447)
T ss_dssp CCSS--CSCCEE--SCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTT
T ss_pred CCcc--ccceee--ccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCC
Confidence 7 53 333344 34321 33499999999999999999999999864
No 104
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-35 Score=253.85 Aligned_cols=272 Identities=8% Similarity=0.009 Sum_probs=207.8
Q ss_pred ccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCC
Q 017553 30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING 108 (369)
Q Consensus 30 ~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg 108 (369)
++-...|.+|+|+| ||+++|+++.|+ |+ |...++.+ . .|...|++++|+ |+| .++
T Consensus 12 ~~~~~~v~sv~~Sp----DG~~iASas~D~TV~--d~~~~~~l---~-----gh~~~v~~V~Fs--Pdg--------~~~ 67 (588)
T 2j04_A 12 KEFEDWKNNLTWAR----DGTLYLTTFPDISIG--QPKYAKDI---N-----CNSKNLFHVKEF--PLE--------FEN 67 (588)
T ss_dssp CCCSSSSCCEEECT----TSCEEEECSSSEEEE--EECCCSCC---S-----SBGGGTEEEEEE--CCC--------CCC
T ss_pred hHhhccEEEEEECC----CCCEEEEEcCCceee--ccccccee---c-----CCCccEEEEEEC--CCC--------Ccc
Confidence 45678999999999 799999999999 87 75555433 2 688999999998 888 356
Q ss_pred eEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCC-----cEEEEEec
Q 017553 109 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRN-----EVLSVDFH 183 (369)
Q Consensus 109 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-----~v~~~~~~ 183 (369)
.+.+|+.+ +.....+ .|...|.+++|+| ++..|++++.||.|++||.+. ++..+. |.. .+.+++|+
T Consensus 68 ~~~~~~~~-~~~~~~~-~~~~~V~~vawSP-dG~~LAs~s~dg~V~iwd~~~--~l~~l~----~~~~~~~~sv~svafS 138 (588)
T 2j04_A 68 KLDFELAQ-QNGLLNS-QPVCYPRVCKPSP-IDDWMAVLSNNGNVSVFKDNK--MLTNLD----SKGNLSSRTYHCFEWN 138 (588)
T ss_dssp TTTTSCCC-SSCSSTT-SCSCCEEEEEECS-SSSCEEEEETTSCEEEEETTE--EEEECC----CSSCSTTTCEEEEEEC
T ss_pred eEEEEeCC-CceEeec-CCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCc--eeeecc----CCCccccccEEEEEEc
Confidence 55555533 2223333 4588999999999 999999999999999999644 444433 443 59999999
Q ss_pred CCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeee----ccCCCceeeeeeeCcEEEEeecC
Q 017553 184 PSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA----SVHSNYVDCNRWLGDFILSKSVD 259 (369)
Q Consensus 184 ~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~l~~~~~d 259 (369)
| ++++|++|+.||+|++||+..+.... . .-..+..+ .+|...|.+++|+++-+++++.|
T Consensus 139 P-DG~~LAsgs~DGtVkIWd~~~~~l~~-~---------------~~i~l~ti~~~~~gh~~~V~sVawSPdgLaass~D 201 (588)
T 2j04_A 139 P-IESSIVVGNEDGELQFFSIRKNSENT-P---------------EFYFESSIRLSDAGSKDWVTHIVWYEDVLVAALSN 201 (588)
T ss_dssp S-SSSCEEEEETTSEEEEEECCCCTTTC-C---------------CCEEEEEEECSCTTCCCCEEEEEEETTEEEEEETT
T ss_pred C-CCCEEEEEcCCCEEEEEECCCCcccc-c---------------cceeeeeeecccccccccEEEEEEcCCcEEEEeCC
Confidence 9 99999999999999999998831000 0 00012333 66889999999994339999999
Q ss_pred CeEEEecCCCCCCCCCCCccceeeec-cCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCcc
Q 017553 260 NEIVLWEPKMKEQSPGEGTADILQKY-PVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKS 338 (369)
Q Consensus 260 ~~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 338 (369)
+.|++||+..... ......+ ..|...|.+++|+ ++ .|++++ ++.|++||+.+++ ...... +|.+
T Consensus 202 ~tVrlWd~~~~~~------~~~~~tL~~~h~~~V~svaFs--g~--~LASa~-~~tIkLWd~~~~~--~~~~~~--gh~~ 266 (588)
T 2j04_A 202 NSVFSMTVSASSH------QPVSRMIQNASRRKITDLKIV--DY--KVVLTC-PGYVHKIDLKNYS--ISSLKT--GSLE 266 (588)
T ss_dssp CCEEEECCCSSSS------CCCEEEEECCCSSCCCCEEEE--TT--EEEEEC-SSEEEEEETTTTE--EEEEEC--SCCS
T ss_pred CeEEEEECCCCcc------ccceeeecccccCcEEEEEEE--CC--EEEEEe-CCeEEEEECCCCe--EEEEEc--CCCc
Confidence 9999999987652 1122344 3677889999999 43 888887 6999999999873 322222 6889
Q ss_pred ceEEEEe--cCCCCEEEEeecCCeEEEEecC
Q 017553 339 PIRQTAM--SYDGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 339 ~v~~~~~--s~~~~~l~s~~~dg~i~vw~~~ 367 (369)
.|..++| +||+..|++++.||. ++|...
T Consensus 267 ~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 267 NFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp CCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred eEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 9999999 999999999999999 999864
No 105
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=2e-34 Score=249.70 Aligned_cols=292 Identities=14% Similarity=0.027 Sum_probs=228.2
Q ss_pred ceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccE
Q 017553 22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPF 100 (369)
Q Consensus 22 ~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~ 100 (369)
.++....+..+ ..+.+++|+| ++.++++++.++ |++||+.+++............|...|.+++|. +++. +
T Consensus 112 ~~~~~~~~~~~-~~~~~~~~s~----~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~--~~~~-~ 183 (433)
T 3bws_A 112 THRFISRFKTG-FQPKSVRFID----NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIP--EHNE-L 183 (433)
T ss_dssp SEEEEEEEECS-SCBCCCEESS----SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEG--GGTE-E
T ss_pred cceEEEEEcCC-CCceEEEEeC----CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEc--CCCE-E
Confidence 44555555544 4566999999 478888888887 999999988877644432233577789999986 8888 9
Q ss_pred EEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceE-EEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEE
Q 017553 101 LVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLV-VSASKDESVRLWNVQTGICILIFAGAGGHRNEVLS 179 (369)
Q Consensus 101 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~ 179 (369)
+++++.|+.|++||+.+++.+..+..|...+.+++|+| ++..+ ++++.|+.|++||+++++.+..+. +...+.+
T Consensus 184 ~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~----~~~~~~~ 258 (433)
T 3bws_A 184 WVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDP-IRDLVYCSNWISEDISVIDRKTKLEIRKTD----KIGLPRG 258 (433)
T ss_dssp EEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEET-TTTEEEEEETTTTEEEEEETTTTEEEEECC----CCSEEEE
T ss_pred EEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcC-CCCEEEEEecCCCcEEEEECCCCcEEEEec----CCCCceE
Confidence 99999999999999999999999988999999999999 66666 566689999999999998888776 4566999
Q ss_pred EEecCCCceEEEEEe--------eCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--
Q 017553 180 VDFHPSDIYRIASCG--------MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-- 249 (369)
Q Consensus 180 ~~~~~~~~~~l~~~~--------~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-- 249 (369)
++|+| ++..+++++ .|+.|++||+++++. . ....|...+.+++|+
T Consensus 259 ~~~~~-~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~-----------------------~-~~~~~~~~~~~~~~~~~ 313 (433)
T 3bws_A 259 LLLSK-DGKELYIAQFSASNQESGGGRLGIYSMDKEKL-----------------------I-DTIGPPGNKRHIVSGNT 313 (433)
T ss_dssp EEECT-TSSEEEEEEEESCTTCSCCEEEEEEETTTTEE-----------------------E-EEEEEEECEEEEEECSS
T ss_pred EEEcC-CCCEEEEEECCCCccccCCCeEEEEECCCCcE-----------------------E-eeccCCCCcceEEECCC
Confidence 99999 777788877 488999999987421 1 112344567778887
Q ss_pred Cc-EEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecC---------------CC
Q 017553 250 GD-FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR---------------EG 313 (369)
Q Consensus 250 ~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~---------------dg 313 (369)
++ ++++++.++.|++||+.+.+ .+..+. +...+..++|+|+++ ++++++. ||
T Consensus 314 g~~l~~~~~~~~~v~v~d~~~~~---------~~~~~~-~~~~~~~~~~s~dg~--~l~~~~~~~~~~~~~~~~~g~~dg 381 (433)
T 3bws_A 314 ENKIYVSDMCCSKIEVYDLKEKK---------VQKSIP-VFDKPNTIALSPDGK--YLYVSCRGPNHPTEGYLKKGLVLG 381 (433)
T ss_dssp TTEEEEEETTTTEEEEEETTTTE---------EEEEEE-CSSSEEEEEECTTSS--EEEEEECCCCCTTTCTTSCCSSCC
T ss_pred CCEEEEEecCCCEEEEEECCCCc---------EEEEec-CCCCCCeEEEcCCCC--EEEEEecCCCccccccccccccce
Confidence 54 55677899999999998765 344443 456788999999997 5665554 57
Q ss_pred eEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeec-CCeEEEEecCC
Q 017553 314 KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCE-DGAIWRWDAIP 368 (369)
Q Consensus 314 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~i~vw~~~~ 368 (369)
.|++||+.++ ..+..+.. ...+.+++|+|+|++|++++. |+.|++|+++.
T Consensus 382 ~v~~~d~~~~--~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 382 KVYVIDTTTD--TVKEFWEA---GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEEEEETTTT--EEEEEEEC---SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred EEEEEECCCC--cEEEEecC---CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 9999999987 44555542 257899999999999988875 99999999864
No 106
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=5e-35 Score=251.47 Aligned_cols=291 Identities=15% Similarity=0.204 Sum_probs=200.1
Q ss_pred ccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecC-CCccEEEEeecC
Q 017553 30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNV-DGIPFLVAGGIN 107 (369)
Q Consensus 30 ~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~g~~~l~~~~~d 107 (369)
.+|...|++++|+|. ++.+|++++.++ |++||+.+++....+. +...+.++++.+.. ++. ++++++.+
T Consensus 96 ~~~~~~v~~~~~~~~---~~~~l~s~~~d~~i~iwd~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-~~~~~~~~ 165 (408)
T 4a11_B 96 DVHRYSVETVQWYPH---DTGMFTSSSFDKTLKVWDTNTLQTADVFN------FEETVYSHHMSPVSTKHC-LVAVGTRG 165 (408)
T ss_dssp TCCSSCEEEEEECTT---CTTCEEEEETTSEEEEEETTTTEEEEEEE------CSSCEEEEEECSSCSSCC-EEEEEESS
T ss_pred ccCCCcEEEEEEccC---CCcEEEEEeCCCeEEEeeCCCCccceecc------CCCceeeeEeecCCCCCc-EEEEEcCC
Confidence 369999999999994 367999999888 9999999888776665 45678888887432 444 89999999
Q ss_pred CeEEEEEcCCccccceeeccccceEEEEecCCCCc-eEEEEeCCCcEEEEEccCCc-EEEEeec------------cCCC
Q 017553 108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPS-LVVSASKDESVRLWNVQTGI-CILIFAG------------AGGH 173 (369)
Q Consensus 108 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~-~~~~~~~------------~~~~ 173 (369)
|.|++||+.+++.+..+.+|...|.+++|+| ++. +|++++.||.|++||++++. .+..+.. ...|
T Consensus 166 ~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (408)
T 4a11_B 166 PKVQLCDLKSGSCSHILQGHRQEILAVSWSP-RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAH 244 (408)
T ss_dssp SSEEEEESSSSCCCEEECCCCSCEEEEEECS-SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSC
T ss_pred CeEEEEeCCCcceeeeecCCCCcEEEEEECC-CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccc
Confidence 9999999999999999999999999999999 555 69999999999999998765 3333310 1268
Q ss_pred CCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee-CcE
Q 017553 174 RNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDF 252 (369)
Q Consensus 174 ~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~ 252 (369)
...|.+++|+| ++.+|++++.|+.|++||++++......... . ............... +..
T Consensus 245 ~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----------------~-~~~~~~~~~~~~~~~~~~~ 306 (408)
T 4a11_B 245 NGKVNGLCFTS-DGLHLLTVGTDNRMRLWNSSNGENTLVNYGK----------------V-CNNSKKGLKFTVSCGCSSE 306 (408)
T ss_dssp SSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCBCCCCCCC----------------C-CCCCSSCCCCEECCSSSSC
T ss_pred cCceeEEEEcC-CCCEEEEecCCCeEEEEECCCCccceecccc----------------c-cccccccceeEEecCCCce
Confidence 89999999999 8999999999999999999985321111000 0 000001111111111 567
Q ss_pred EEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEee
Q 017553 253 ILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLS 332 (369)
Q Consensus 253 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 332 (369)
+++++.++.|++||+.+++ .+..+..|...|.+++|+|+++ +|++++.||.|++||+.+.++.. ...
T Consensus 307 ~~~~~~~~~i~v~d~~~~~---------~~~~~~~~~~~v~~~~~s~~~~--~l~s~~~dg~i~iw~~~~~~~~~--~~~ 373 (408)
T 4a11_B 307 FVFVPYGSTIAVYTVYSGE---------QITMLKGHYKTVDCCVFQSNFQ--ELYSGSRDCNILAWVPSLYEPVP--DDD 373 (408)
T ss_dssp EEEEEETTEEEEEETTTCC---------EEEEECCCSSCEEEEEEETTTT--EEEEEETTSCEEEEEECC----------
T ss_pred EEEEecCCEEEEEECcCCc---------ceeeeccCCCeEEEEEEcCCCC--EEEEECCCCeEEEEeCCCCCccC--CCC
Confidence 7788899999999999876 6788888999999999999996 89999999999999999885432 222
Q ss_pred cCCCccceEEEEecC-CCCEEEEeecCCeEEEEecC
Q 017553 333 HAQSKSPIRQTAMSY-DGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 333 ~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~vw~~~ 367 (369)
.. -....+.+ +...+.+++.++.+++|+..
T Consensus 374 --~~---~~~~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 374 --ET---TTKSQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp ------------------------------------
T ss_pred --ce---EeccccccccceeecccCccCceeecCCc
Confidence 11 11122333 33456677789999999853
No 107
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=2.9e-35 Score=254.28 Aligned_cols=259 Identities=16% Similarity=0.265 Sum_probs=212.6
Q ss_pred cccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecC----------CceeEEEeeeccCCcccceeEEEeeecCCC
Q 017553 29 LQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLE----------GGVIAALQSYVDEDKEESFYTVSWACNVDG 97 (369)
Q Consensus 29 ~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~----------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g 97 (369)
+..|.+.|++++|+|. ++.+||+++.++ |++|++.+ ......+. .|...|++++|+ |++
T Consensus 124 ~~~h~~~v~~l~~~p~---~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~-----~h~~~v~~l~~~--~~~ 193 (430)
T 2xyi_A 124 KINHEGEVNRARYMPQ---NACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLR-----GHQKEGYGLSWN--PNL 193 (430)
T ss_dssp EEEESSCCSEEEEETT---EEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEE-----CCSSCCCCEEEC--TTS
T ss_pred EEcCCCcEEEEEECCC---CCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEec-----CCCCCeEEEEeC--CCC
Confidence 4579999999999993 268999999888 99999876 44555555 577889999998 777
Q ss_pred ccEEEEeecCCeEEEEEcCCccc-------cceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCC---cEEEEe
Q 017553 98 IPFLVAGGINGIIRVIDVSNEKL-------HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG---ICILIF 167 (369)
Q Consensus 98 ~~~l~~~~~dg~i~vwd~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~---~~~~~~ 167 (369)
..+|++|+.||.|++|++.++.. ...+.+|...|.+++|+|.++.+|++++.||.|++||++++ +.+..+
T Consensus 194 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~ 273 (430)
T 2xyi_A 194 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV 273 (430)
T ss_dssp TTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEE
T ss_pred CCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEe
Confidence 66899999999999999987422 45666899999999999977889999999999999999987 466666
Q ss_pred eccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeee
Q 017553 168 AGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNR 247 (369)
Q Consensus 168 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 247 (369)
. .|...|++++|+|.+..++++|+.||.|++||++.. ..++..+..|...|.++.
T Consensus 274 ~---~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~----------------------~~~~~~~~~h~~~v~~i~ 328 (430)
T 2xyi_A 274 D---AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL----------------------KLKLHSFESHKDEIFQVQ 328 (430)
T ss_dssp E---CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT----------------------TSCSEEEECCSSCEEEEE
T ss_pred e---cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCC----------------------CCCeEEeecCCCCEEEEE
Confidence 6 699999999999954558999999999999999973 234667778999999999
Q ss_pred ee--C-cEEEEeecCCeEEEecCCCCCCCCC-----CCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEE
Q 017553 248 WL--G-DFILSKSVDNEIVLWEPKMKEQSPG-----EGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE 319 (369)
Q Consensus 248 ~~--~-~~l~~~~~d~~i~i~d~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d 319 (369)
|+ + .++++++.|+.|++||+........ ......+..+..|...|..++|+|+++ .++++++.||.|++|+
T Consensus 329 ~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~~l~s~s~dg~i~iw~ 407 (430)
T 2xyi_A 329 WSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP-WIICSVSEDNIMQVWQ 407 (430)
T ss_dssp ECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSST-TEEEEEETTSEEEEEE
T ss_pred ECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCC-CEEEEEECCCCEEEeE
Confidence 98 4 4799999999999999987432110 011236677788888999999999986 3889999999999999
Q ss_pred ccCC
Q 017553 320 LQSS 323 (369)
Q Consensus 320 ~~~~ 323 (369)
+...
T Consensus 408 ~~~~ 411 (430)
T 2xyi_A 408 MAEN 411 (430)
T ss_dssp ECHH
T ss_pred cccc
Confidence 8754
No 108
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-35 Score=247.35 Aligned_cols=262 Identities=10% Similarity=0.084 Sum_probs=199.6
Q ss_pred CccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcC---------C
Q 017553 48 YFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVS---------N 117 (369)
Q Consensus 48 ~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~---------~ 117 (369)
++.+|++|+.|+ |++||+.+++.+..+. ...|.++.+. |+ +++++.|++|++|+.. +
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~-------~~~v~~~~~~--~~----~~s~s~D~~i~~w~~~~~~~~~~~~~ 113 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKDSKTITTIT-------TPNPRTGGEH--PA----IISRGPCNRLLLLYPGNQITILDSKT 113 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESSSSCEEEEE-------EECCCTTCCC--CS----EEEECSTTEEEEEETTTEEEEEETTT
T ss_pred CCCEEEEECCCCcEEEEECCCCcEEEEEe-------cCCceeeeeC--Cc----eEEecCCCeEEEEEccCceEEeecCC
Confidence 578999999999 9999999998877766 2356666666 54 8999999999999765 3
Q ss_pred ccccceee-ccccceEEEEecCC-CCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEee
Q 017553 118 EKLHKSFV-GHGDSINEIRTQPL-KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM 195 (369)
Q Consensus 118 ~~~~~~~~-~~~~~v~~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 195 (369)
++.+..+. +|.+.|.+++|+|. ++++|++++.||.|++||+++++.+..... .|...+.+++|+| ++.+|++|+.
T Consensus 114 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~--~~~~~i~~~~~~p-dg~~lasg~~ 190 (343)
T 3lrv_A 114 NKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSA--KSDVEYSSGVLHK-DSLLLALYSP 190 (343)
T ss_dssp CCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECC--CSSCCCCEEEECT-TSCEEEEECT
T ss_pred cceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec--CCCCceEEEEECC-CCCEEEEEcC
Confidence 33333433 56689999999992 467999999999999999999998766542 4666899999999 9999999999
Q ss_pred CCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecce-eeecc-CCCceeeeeee--CcEEEEeecCCeEEEecCCCCC
Q 017553 196 DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV-FIASV-HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKE 271 (369)
Q Consensus 196 d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~ 271 (369)
||.|++||++++. .. ..+.. |...|.+++|+ +.+|++++ ++.|++||+++.+
T Consensus 191 dg~i~iwd~~~~~-----------------------~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~ 246 (343)
T 3lrv_A 191 DGILDVYNLSSPD-----------------------QASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDV 246 (343)
T ss_dssp TSCEEEEESSCTT-----------------------SCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSST
T ss_pred CCEEEEEECCCCC-----------------------CCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCC
Confidence 9999999999832 22 44555 99999999997 77899988 5599999999876
Q ss_pred CCCCCCccceeeeccCCCCCe--eEEEEeecCCccEEEEecC-CCeEEEEEccCCCceeEEEeecCCCccceEEEEecC-
Q 017553 272 QSPGEGTADILQKYPVPECDI--WFIKFSCDFHYNAAAIGNR-EGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSY- 347 (369)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~i--~~~~~s~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~- 347 (369)
... .+..+..+...+ .+++|+|+++ +|++++. |+.|++|++......... .++..++|++
T Consensus 247 ~~~------~~~~~~~~~~~~~~~~~~~~~~g~--~l~~~s~~d~~i~v~~~~~~~~~~~~--------~~~~~~~~~~~ 310 (343)
T 3lrv_A 247 GTL------AYPTYTIPEFKTGTVTYDIDDSGK--NMIAYSNESNSLTIYKFDKKTKNWTK--------DEESALCLQSD 310 (343)
T ss_dssp TCB------SSCCCBC-----CCEEEEECTTSS--EEEEEETTTTEEEEEEECTTTCSEEE--------EEEEECCC---
T ss_pred cce------eecccccccccccceEEEECCCCC--EEEEecCCCCcEEEEEEcccccceEe--------cCceeEecCcc
Confidence 321 122222233333 3699999996 8888877 999999999766432221 3577888888
Q ss_pred --CCCEEEEeecCCeEEEEe
Q 017553 348 --DGSTILSCCEDGAIWRWD 365 (369)
Q Consensus 348 --~~~~l~s~~~dg~i~vw~ 365 (369)
+.+.|++++.||.++++-
T Consensus 311 ~~~~~~l~~~~~d~~~~~~~ 330 (343)
T 3lrv_A 311 TADFTDMDVVCGDGGIAAIL 330 (343)
T ss_dssp -CCCCEEEEEEETTEEEEEE
T ss_pred ccccceeEEEecCCceEEEE
Confidence 888999999999888774
No 109
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-35 Score=273.76 Aligned_cols=257 Identities=19% Similarity=0.302 Sum_probs=209.0
Q ss_pred eecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCC--ceeEEEeeeccCCcccceeEEEeeecCCCccEEEE
Q 017553 27 NKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEG--GVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVA 103 (369)
Q Consensus 27 ~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~ 103 (369)
..+.+|.++|++++|+| ++++|++++.|+ |+|||+..+ .....+. .|...|.+++|++..++. +|++
T Consensus 3 ~~l~gH~~~V~~l~~s~----dg~~latg~~dg~I~vwd~~~~~~~~~~~l~-----~h~~~V~~l~~s~~~~~~-~l~s 72 (753)
T 3jro_A 3 VIANAHNELIHDAVLDY----YGKRLATCSSDKTIKIFEVEGETHKLIDTLT-----GHEGPVWRVDWAHPKFGT-ILAS 72 (753)
T ss_dssp -----CCCCEEEECCCS----SSCCEEEEETTTEEEEEEEETTEEEEEEEEC-----CCSSCEEEEEECCTTSCS-EEEE
T ss_pred eecccCcceeEEEEECC----CCCeEEEEECCCcEEEEecCCCCCccceecc-----CCcCceEEEEecCCCCCC-EEEE
Confidence 45789999999999999 689999999998 999998743 3444444 588899999998433387 9999
Q ss_pred eecCCeEEEEEcCCcc--ccceeeccccceEEEEecCCC--CceEEEEeCCCcEEEEEccCCc--EEEEeeccCCCCCcE
Q 017553 104 GGINGIIRVIDVSNEK--LHKSFVGHGDSINEIRTQPLK--PSLVVSASKDESVRLWNVQTGI--CILIFAGAGGHRNEV 177 (369)
Q Consensus 104 ~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~v 177 (369)
|+.||.|++||+.+++ .+..+.+|...|.+++|+| + +.++++|+.||.|++||++++. ....+. +|...|
T Consensus 73 ~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp-~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~---~~~~~v 148 (753)
T 3jro_A 73 CSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIID---AHAIGV 148 (753)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEECCSSSCCCCEEEE---CCSSCE
T ss_pred EeCCCeEEEEECCCCcccccccccCCCCCeEEEEECC-CCCCCEEEEEeCCCcEEEEEeecCCCcceeEee---cCCCce
Confidence 9999999999999886 6778888999999999999 6 8999999999999999998873 233444 699999
Q ss_pred EEEEecCC------------CceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceee
Q 017553 178 LSVDFHPS------------DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDC 245 (369)
Q Consensus 178 ~~~~~~~~------------~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 245 (369)
.+++|+|. ++.++++|+.||.|++||++.+.. .......+..|...|.+
T Consensus 149 ~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~-------------------~~~~~~~~~~h~~~V~~ 209 (753)
T 3jro_A 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ-------------------TYVLESTLEGHSDWVRD 209 (753)
T ss_dssp EEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTT-------------------EEEEEEEECCCSSCEEE
T ss_pred EEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcc-------------------cceeeeeecCCCCcEEE
Confidence 99999994 488999999999999999987321 12345567789999999
Q ss_pred eeee-----CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEc
Q 017553 246 NRWL-----GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL 320 (369)
Q Consensus 246 ~~~~-----~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~ 320 (369)
++|+ ++++++++.||.|++||+++..... ...+.....+...+.+++|+|+++ ++++++.||.|++||+
T Consensus 210 l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~----~~~~~~~~~~~~~v~~l~~spdg~--~l~s~s~Dg~I~vwd~ 283 (753)
T 3jro_A 210 VAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPW----KKTLLKEEKFPDVLWRASWSLSGN--VLALSGGDNKVTLWKE 283 (753)
T ss_dssp EEECCCCSSSEEEEEEESSSCEEEEEESSSSSCC----BCCBSSSSCCSSCCCCEEECTTTC--CEEEECSSSCEECCBC
T ss_pred EEeccCCCCCCEEEEEecCCEEEEecCCCCCCcc----eeEEeccCCCCCceEEEEEcCCCC--EEEEEcCCCEEEEEec
Confidence 9997 5689999999999999998864211 112333445678899999999996 8999999999999998
Q ss_pred cC
Q 017553 321 QS 322 (369)
Q Consensus 321 ~~ 322 (369)
..
T Consensus 284 ~~ 285 (753)
T 3jro_A 284 NL 285 (753)
T ss_dssp CS
T ss_pred CC
Confidence 74
No 110
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=6.5e-35 Score=244.84 Aligned_cols=254 Identities=7% Similarity=0.010 Sum_probs=202.1
Q ss_pred CcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCcc---ccceeeccccceEEEEecCCCCc-eEEEEeCCCcEEEE
Q 017553 81 DKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK---LHKSFVGHGDSINEIRTQPLKPS-LVVSASKDESVRLW 156 (369)
Q Consensus 81 ~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~dg~i~vw 156 (369)
.|.+.|.+++|+ |++. +|++++.||.|++|++.+++ ....+.+|...|.+++|+| ++. +|++|+.||.|++|
T Consensus 9 ~h~~~v~~~~~s--~~~~-~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~w 84 (342)
T 1yfq_A 9 APKDYISDIKII--PSKS-LLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID-NTDLQIYVGTVQGEILKV 84 (342)
T ss_dssp CCSSCEEEEEEE--GGGT-EEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEE-SSSEEEEEEETTSCEEEE
T ss_pred CCCCcEEEEEEc--CCCC-EEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECC-CCCcEEEEEcCCCeEEEE
Confidence 688999999999 8888 99999999999999998776 3455668999999999999 788 99999999999999
Q ss_pred Ec-cCCcEEEEeeccCC--CCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecce
Q 017553 157 NV-QTGICILIFAGAGG--HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV 233 (369)
Q Consensus 157 d~-~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (369)
|+ .+++. ..+. + |...|.+++|+| +.++++++.|+.|++||+++....... ....++
T Consensus 85 d~~~~~~~-~~~~---~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~--------------~~~~~~ 144 (342)
T 1yfq_A 85 DLIGSPSF-QALT---NNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIA--------------VKNLNS 144 (342)
T ss_dssp CSSSSSSE-EECB---SCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEE--------------EEESCS
T ss_pred EeccCCce-Eecc---ccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEccccccccccc--------------ccCCee
Confidence 99 87765 4454 7 999999999998 678999999999999999861100000 001122
Q ss_pred eeeccCCCceeeeeeeCcEEEEeecCCeEEEecCCC-CCCCCCCCccceeeeccCCCCCeeEEEEee-cCCccEEEEecC
Q 017553 234 FIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKM-KEQSPGEGTADILQKYPVPECDIWFIKFSC-DFHYNAAAIGNR 311 (369)
Q Consensus 234 ~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~~~l~~~~~ 311 (369)
..+. |...+.+++|+++.+++++.|+.|++||+++ .... .......+...+.+++|+| +++ ++++++.
T Consensus 145 ~~~~-~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-------~~~~~~~~~~~i~~i~~~~~~~~--~l~~~~~ 214 (342)
T 1yfq_A 145 NNTK-VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDN-------GTIEESGLKYQIRDVALLPKEQE--GYACSSI 214 (342)
T ss_dssp SSSS-SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCC-------CEEEECSCSSCEEEEEECSGGGC--EEEEEET
T ss_pred eEEe-eCCceEEEEecCCcEEEEeCCCeEEEEECCcccccc-------ceeeecCCCCceeEEEECCCCCC--EEEEEec
Confidence 2333 7889999999977799999999999999987 4321 2223345667899999999 886 8999999
Q ss_pred CCeEEEEEccCC--C--ceeEEEee-cC------CCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 312 EGKIFVWELQSS--P--PVLIARLS-HA------QSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 312 dg~i~i~d~~~~--~--~~~~~~~~-~~------~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
||.|++|++... . ......+. +. +|...|.+++|+|++++|++++.||.|++||+.+
T Consensus 215 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 282 (342)
T 1yfq_A 215 DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT 282 (342)
T ss_dssp TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred CCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCcc
Confidence 999999999876 1 12233344 11 1244999999999999999999999999999874
No 111
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=4.8e-35 Score=251.00 Aligned_cols=237 Identities=18% Similarity=0.305 Sum_probs=195.8
Q ss_pred EEeeecCCCccEEEEeecCCeEEEEEcCCc----cccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCC---
Q 017553 89 VSWACNVDGIPFLVAGGINGIIRVIDVSNE----KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG--- 161 (369)
Q Consensus 89 ~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~--- 161 (369)
++++ |+...++++++.||.|++|++.+. +.+..+.+|.+.|.+++|+|.++.+|++|+.||.|++||+.++
T Consensus 40 ~~~~--~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~ 117 (402)
T 2aq5_A 40 CAVN--PKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLV 117 (402)
T ss_dssp EEEC--SSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCS
T ss_pred EEEC--CCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCc
Confidence 5554 776645556889999999998654 3456678899999999999977889999999999999999987
Q ss_pred ----cEEEEeeccCCCCCcEEEEEecCCCc-eEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeee
Q 017553 162 ----ICILIFAGAGGHRNEVLSVDFHPSDI-YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA 236 (369)
Q Consensus 162 ----~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (369)
+.+..+. +|...|.+++|+| ++ ++|++++.|+.|++||++++ ..+..+
T Consensus 118 ~~~~~~~~~~~---~h~~~v~~~~~~p-~~~~~l~s~~~dg~i~iwd~~~~-----------------------~~~~~~ 170 (402)
T 2aq5_A 118 LPLREPVITLE---GHTKRVGIVAWHP-TAQNVLLSAGCDNVILVWDVGTG-----------------------AAVLTL 170 (402)
T ss_dssp SCBCSCSEEEE---CCSSCEEEEEECS-SBTTEEEEEETTSCEEEEETTTT-----------------------EEEEEE
T ss_pred cccCCceEEec---CCCCeEEEEEECc-CCCCEEEEEcCCCEEEEEECCCC-----------------------CccEEE
Confidence 5566776 7999999999999 55 79999999999999999983 344555
Q ss_pred --ccCCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeec-cCCCCC-eeEEEEeecCCccEEEEe-
Q 017553 237 --SVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY-PVPECD-IWFIKFSCDFHYNAAAIG- 309 (369)
Q Consensus 237 --~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~-i~~~~~s~~~~~~~l~~~- 309 (369)
..|...|.+++|+ +++|++++.|+.|++||+++++ .+..+ ..|... +..++|+|++. +|++|
T Consensus 171 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~ 239 (402)
T 2aq5_A 171 GPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGT---------VVAEKDRPHEGTRPVHAVFVSEGK--ILTTGF 239 (402)
T ss_dssp CTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE---------EEEEEECSSCSSSCCEEEECSTTE--EEEEEE
T ss_pred ecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCc---------eeeeeccCCCCCcceEEEEcCCCc--EEEEec
Confidence 6799999999997 7899999999999999999876 45555 556554 89999999985 88888
Q ss_pred --cCCCeEEEEEccCCCc-eeEEEeecCCCccceEEEEecCCCCEEEE-eecCCeEEEEecCC
Q 017553 310 --NREGKIFVWELQSSPP-VLIARLSHAQSKSPIRQTAMSYDGSTILS-CCEDGAIWRWDAIP 368 (369)
Q Consensus 310 --~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~s-~~~dg~i~vw~~~~ 368 (369)
+.|+.|++||+.+.+. .....+ .+...+.+++|+|++++|++ ++.||.|++||+.+
T Consensus 240 ~~~~d~~i~iwd~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~ 299 (402)
T 2aq5_A 240 SRMSERQVALWDTKHLEEPLSLQEL---DTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITS 299 (402)
T ss_dssp CTTCCEEEEEEETTBCSSCSEEEEC---CCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECS
T ss_pred cCCCCceEEEEcCccccCCceEEec---cCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecC
Confidence 7999999999998754 222222 45578999999999999965 55799999999875
No 112
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-34 Score=239.82 Aligned_cols=270 Identities=16% Similarity=0.229 Sum_probs=218.9
Q ss_pred ccccccccccccccccccceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCc
Q 017553 4 TAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDK 82 (369)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~ 82 (369)
+++++.+....+.. ....+....+..|...|.+++|+| ++++|++++.++ |++|++........+..+ ..|
T Consensus 32 l~s~~~dg~v~vw~--~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~--~~~ 103 (313)
T 3odt_A 32 VASVSRDGTVRLWS--KDDQWLGTVVYTGQGFLNSVCYDS----EKELLLFGGKDTMINGVPLFATSGEDPLYTL--IGH 103 (313)
T ss_dssp EEEEETTSEEEEEE--ESSSEEEEEEEECSSCEEEEEEET----TTTEEEEEETTSCEEEEETTCCTTSCC-CEE--CCC
T ss_pred EEEEEcCCcEEEEE--CCCCEEEEEeecCCccEEEEEECC----CCCEEEEecCCCeEEEEEeeecCCCCcccch--hhc
Confidence 45555555444443 344556667789999999999999 689999999998 999998765432222222 157
Q ss_pred ccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCc
Q 017553 83 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI 162 (369)
Q Consensus 83 ~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 162 (369)
...|.+++|. +. ++++++.||.|++|| .++....+..|...+.+++|.|.+++.+++++.||.|++|| .++
T Consensus 104 ~~~i~~~~~~----~~-~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~ 174 (313)
T 3odt_A 104 QGNVCSLSFQ----DG-VVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDK 174 (313)
T ss_dssp SSCEEEEEEE----TT-EEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTE
T ss_pred ccCEEEEEec----CC-EEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCc
Confidence 8899988883 45 899999999999999 67778888899999999999987788999999999999999 455
Q ss_pred EEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCc
Q 017553 163 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY 242 (369)
Q Consensus 163 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (369)
....+.. .|...+.+++|+| ++. +++++.|+.|++||+++ ..++..+..|...
T Consensus 175 ~~~~~~~--~~~~~i~~~~~~~-~~~-~~~~~~dg~i~i~d~~~-----------------------~~~~~~~~~~~~~ 227 (313)
T 3odt_A 175 VIKTFSG--IHNDVVRHLAVVD-DGH-FISCSNDGLIKLVDMHT-----------------------GDVLRTYEGHESF 227 (313)
T ss_dssp EEEEECS--SCSSCEEEEEEEE-TTE-EEEEETTSEEEEEETTT-----------------------CCEEEEEECCSSC
T ss_pred eEEEEec--cCcccEEEEEEcC-CCe-EEEccCCCeEEEEECCc-----------------------hhhhhhhhcCCce
Confidence 6666652 3899999999999 777 99999999999999998 3456677789999
Q ss_pred eeeeeee-CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEcc
Q 017553 243 VDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ 321 (369)
Q Consensus 243 v~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~ 321 (369)
|.+++|+ ...+++++.|+.|++||+++.+ .+..+..+...+.+++|+|+++ +++++.||.|++||+.
T Consensus 228 i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~---------~~~~~~~~~~~i~~~~~~~~~~---~~~~~~dg~i~iw~~~ 295 (313)
T 3odt_A 228 VYCIKLLPNGDIVSCGEDRTVRIWSKENGS---------LKQVITLPAISIWSVDCMSNGD---IIVGSSDNLVRIFSQE 295 (313)
T ss_dssp EEEEEECTTSCEEEEETTSEEEEECTTTCC---------EEEEEECSSSCEEEEEECTTSC---EEEEETTSCEEEEESC
T ss_pred EEEEEEecCCCEEEEecCCEEEEEECCCCc---------eeEEEeccCceEEEEEEccCCC---EEEEeCCCcEEEEeCC
Confidence 9999998 3379999999999999999876 6777788888999999999995 5678999999999999
Q ss_pred CCCceeEE
Q 017553 322 SSPPVLIA 329 (369)
Q Consensus 322 ~~~~~~~~ 329 (369)
+++.....
T Consensus 296 ~~~~~~~~ 303 (313)
T 3odt_A 296 KSRWASED 303 (313)
T ss_dssp GGGCCC--
T ss_pred CCceeehh
Confidence 87544333
No 113
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.3e-34 Score=245.31 Aligned_cols=246 Identities=17% Similarity=0.272 Sum_probs=198.8
Q ss_pred CcccceeEEEeeecCC---CccEEEEeecCCeEEEEEcCC-cccc-ceeeccccceEEEEecCCCCceEEEEeCCCcEEE
Q 017553 81 DKEESFYTVSWACNVD---GIPFLVAGGINGIIRVIDVSN-EKLH-KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRL 155 (369)
Q Consensus 81 ~~~~~v~~~~~~~~~~---g~~~l~~~~~dg~i~vwd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~v 155 (369)
.|...|.+++|+ |+ |. +|++|+.||.|++||+.+ +..+ ..+.+|...|.+++|+| ++++|++++.||.|++
T Consensus 37 ~h~~~v~~~~~~--~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~i 112 (368)
T 3mmy_A 37 SPDDSIGCLSFS--PPTLPGN-FLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSD-DGSKVFTASCDKTAKM 112 (368)
T ss_dssp CCSSCEEEEEEC--CTTSSSE-EEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECT-TSSEEEEEETTSEEEE
T ss_pred CCCCceEEEEEc--CCCCCce-EEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECc-CCCEEEEEcCCCcEEE
Confidence 688999999998 87 57 999999999999999987 4444 77889999999999999 8999999999999999
Q ss_pred EEccCCcEEEEeeccCCCCCcEEEEEe--cCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecce
Q 017553 156 WNVQTGICILIFAGAGGHRNEVLSVDF--HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV 233 (369)
Q Consensus 156 wd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (369)
||+++++.+... .|...|.+++| +| ++.+|++++.|+.|++||++++ .++
T Consensus 113 wd~~~~~~~~~~----~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~-----------------------~~~ 164 (368)
T 3mmy_A 113 WDLSSNQAIQIA----QHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSS-----------------------NPM 164 (368)
T ss_dssp EETTTTEEEEEE----ECSSCEEEEEEEECS-SCEEEEEEETTSEEEEECSSCS-----------------------SCS
T ss_pred EEcCCCCceeec----cccCceEEEEEEeCC-CCCEEEEccCCCcEEEEECCCC-----------------------cEE
Confidence 999999877755 49999999999 88 8899999999999999999983 233
Q ss_pred eeeccCCCceeeeeeeCcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCC--ccEEEEecC
Q 017553 234 FIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFH--YNAAAIGNR 311 (369)
Q Consensus 234 ~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~--~~~l~~~~~ 311 (369)
..+..+ ..+.++.+.+..+++++.++.+++|+++..... ..............+.+.++.. ...+++++.
T Consensus 165 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (368)
T 3mmy_A 165 MVLQLP-ERCYCADVIYPMAVVATAERGLIVYQLENQPSE-------FRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI 236 (368)
T ss_dssp EEEECS-SCEEEEEEETTEEEEEEGGGCEEEEECSSSCEE-------EEECCCSCSSCEEEEEEEECTTSCEEEEEEEET
T ss_pred EEEecC-CCceEEEecCCeeEEEeCCCcEEEEEeccccch-------hhhccccccCCCceEEEcccCCCCCCeEEEecC
Confidence 344444 367777888889999999999999999876420 1111122334556666666653 234999999
Q ss_pred CCeEEEEEccCCCc-eeEEEeecCCCcc------------ceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 312 EGKIFVWELQSSPP-VLIARLSHAQSKS------------PIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 312 dg~i~i~d~~~~~~-~~~~~~~~~~~~~------------~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
||.|++||+..... .....+. .|.. .|++++|+|++++|++++.||.|++||+.+
T Consensus 237 dg~i~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~ 304 (368)
T 3mmy_A 237 EGRVAIHYINPPNPAKDNFTFK--CHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDA 304 (368)
T ss_dssp TSEEEEEESSCSCHHHHSEEEE--CSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred CCcEEEEecCCCCccccceeee--eeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCC
Confidence 99999999998743 3334444 4444 799999999999999999999999999875
No 114
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=5.8e-34 Score=240.37 Aligned_cols=252 Identities=14% Similarity=0.104 Sum_probs=196.7
Q ss_pred ecccCCcCeEEEEEeeccCCCccEEEEe-----------cCCc-EEEEEecCCce-eEEEe---eeccCCcccceeEEEe
Q 017553 28 KLQEGKRPLYAVVFNFIDSRYFNVFATV-----------GGNR-VTVYQCLEGGV-IAALQ---SYVDEDKEESFYTVSW 91 (369)
Q Consensus 28 ~~~~h~~~v~~~~~s~~~~~~~~~la~~-----------~~~~-v~iw~~~~~~~-~~~~~---~~~~~~~~~~v~~~~~ 91 (369)
.|.+|...|.++++++ +.++++ +.|+ +++|++.+... +.... ......++..+.+++|
T Consensus 68 ~l~~~~~~v~s~~~~~------~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f 141 (365)
T 4h5i_A 68 ALEDNDDSPTAIDASK------GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYI 141 (365)
T ss_dssp ECCTTSCCCCEEEEET------TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEE
T ss_pred EccCCCCceEEEEeCC------CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEE
Confidence 4678999999998765 455554 3455 99999876543 22222 2222234456778887
Q ss_pred eecCCCccEEE--EeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeec
Q 017553 92 ACNVDGIPFLV--AGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAG 169 (369)
Q Consensus 92 ~~~~~g~~~l~--~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 169 (369)
+ |||+ +++ +++.|++|++||+.+++++..+. |...|.+++|+| ++.+|++++. +.+++|+..+++.+....
T Consensus 142 S--pDg~-~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fsp-dg~~l~s~s~-~~~~~~~~~~~~~~~~~~- 214 (365)
T 4h5i_A 142 S--REGT-VAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFST-DGKVVAYITG-SSLEVISTVTGSCIARKT- 214 (365)
T ss_dssp C--TTSS-CEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSSEEEEECS-SCEEEEETTTCCEEEEEC-
T ss_pred c--CCCC-EEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEcc-CCceEEeccc-eeEEEEEeccCcceeeee-
Confidence 7 9999 655 45578999999999999888886 778899999999 8999999885 567778877777654432
Q ss_pred cCCCCCcEEEEEecCCCceEEEEEeeCC----cEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceee
Q 017553 170 AGGHRNEVLSVDFHPSDIYRIASCGMDN----TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDC 245 (369)
Q Consensus 170 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~----~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 245 (369)
...|...|.+++|+| ++.++++++.|+ .+++|++...... ......+..|...|.+
T Consensus 215 ~~~~~~~v~~v~fsp-dg~~l~~~s~d~~~~~~i~~~~~~~~~~~-------------------~~~~~~~~~~~~~V~~ 274 (365)
T 4h5i_A 215 DFDKNWSLSKINFIA-DDTVLIAASLKKGKGIVLTKISIKSGNTS-------------------VLRSKQVTNRFKGITS 274 (365)
T ss_dssp CCCTTEEEEEEEEEE-TTEEEEEEEESSSCCEEEEEEEEETTEEE-------------------EEEEEEEESSCSCEEE
T ss_pred cCCCCCCEEEEEEcC-CCCEEEEEecCCcceeEEeecccccceec-------------------ceeeeeecCCCCCeEe
Confidence 226888999999999 899999999887 6888888763321 1224466789999999
Q ss_pred eeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeee-ccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccC
Q 017553 246 NRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQK-YPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS 322 (369)
Q Consensus 246 ~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~ 322 (369)
++|+ +++|++|+.|+.|+|||+++++ ++.. ...|...|++++|+||++ +|++|+.|++|+|||+..
T Consensus 275 ~~~Spdg~~lasgs~D~~V~iwd~~~~~---------~~~~~~~gH~~~V~~v~fSpdg~--~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 275 MDVDMKGELAVLASNDNSIALVKLKDLS---------MSKIFKQAHSFAITEVTISPDST--YVASVSAANTIHIIKLPL 343 (365)
T ss_dssp EEECTTSCEEEEEETTSCEEEEETTTTE---------EEEEETTSSSSCEEEEEECTTSC--EEEEEETTSEEEEEECCT
T ss_pred EEECCCCCceEEEcCCCEEEEEECCCCc---------EEEEecCcccCCEEEEEECCCCC--EEEEEeCCCeEEEEEcCC
Confidence 9997 7899999999999999999876 5665 478999999999999997 999999999999999965
Q ss_pred C
Q 017553 323 S 323 (369)
Q Consensus 323 ~ 323 (369)
.
T Consensus 344 ~ 344 (365)
T 4h5i_A 344 N 344 (365)
T ss_dssp T
T ss_pred C
Confidence 4
No 115
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=2.9e-33 Score=232.40 Aligned_cols=244 Identities=16% Similarity=0.214 Sum_probs=199.3
Q ss_pred ecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeec
Q 017553 28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI 106 (369)
Q Consensus 28 ~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~ 106 (369)
.+.+|...|++++|+| ++++||+|+.|+ |++|++.+++.+..+. .|...+.+++ +++. ++++++.
T Consensus 62 ~~~~~~~~V~~v~~~~----~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~-----~h~~~~~~~~----~~~~-~l~s~~~ 127 (318)
T 4ggc_A 62 QMEQPGEYISSVAWIK----EGNYLAVGTSSAEVQLWDVQQQKRLRNMT-----SHSARVGSLS----WNSY-ILSSGSR 127 (318)
T ss_dssp ECCSTTCCEEEEEECT----TSSEEEEEETTSEEEEEETTTTEEEEEEE-----CCSSCEEEEE----EETT-EEEEEET
T ss_pred EecCCCCeEEEEEECC----CCCEEEEEECCCcEEEeecCCceeEEEec-----CccceEEEee----cCCC-EEEEEec
Confidence 3467889999999999 689999999999 9999999999888877 3555665544 3455 8999999
Q ss_pred CCeEEEEEcCCc-cccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEE----EEeeccCCCCCcEEEEE
Q 017553 107 NGIIRVIDVSNE-KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICI----LIFAGAGGHRNEVLSVD 181 (369)
Q Consensus 107 dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~----~~~~~~~~~~~~v~~~~ 181 (369)
++.+++|+.... ..+..+.+|...+..+.+.+ ++.+|++++.|+.|++||+++++.. .... .+.+.|.++.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~---~~~~~v~~~~ 203 (318)
T 4ggc_A 128 SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT---QHQGAVKAVA 203 (318)
T ss_dssp TSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCBTTBSCCSEEEC---CCCSCEEEEE
T ss_pred CCceEeeecCCCceeEEEEcCccCceEEEEEcC-CCCEEEEEecCcceeEEECCCCcccccceeeec---ccCCceEEEE
Confidence 999999998766 44677889999999999999 8899999999999999999876532 2222 5888999999
Q ss_pred ecCCCceEE--EEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEe-
Q 017553 182 FHPSDIYRI--ASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSK- 256 (369)
Q Consensus 182 ~~~~~~~~l--~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~- 256 (369)
++|.+...+ ++++.++.|++||.+... ......+...+..+.|. ++.++++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~i~lwd~~~~~------------------------~~~~~~~~~~v~~~~~~~~~~~~~~~s 259 (318)
T 4ggc_A 204 WCPWQSNVLATGGGTSDRHIRIWNVCSGA------------------------CLSAVDAHSQVCSILWSPHYKELISGH 259 (318)
T ss_dssp ECTTSTTEEEEEECTTTCEEEEEETTTCC------------------------EEEEEECSSCEEEEEEETTTTEEEEEE
T ss_pred ecCCCCcEEEEEecCCCCEEEEEeccccc------------------------ccccccceeeeeeeeecccccceEEEE
Confidence 998555554 356678999999998832 22234466677888886 5555544
Q ss_pred -ecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCC
Q 017553 257 -SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP 324 (369)
Q Consensus 257 -~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~ 324 (369)
+.|+.|++||+++++ .+..+.+|...|++++|+|+++ +|++|+.||+|+|||+.+..
T Consensus 260 g~~d~~i~iwd~~~~~---------~~~~l~gH~~~V~~l~~spdg~--~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 260 GFAQNQLVIWKYPTMA---------KVAELKGHTSRVLSLTMSPDGA--TVASAAADETLRLWRCFELD 317 (318)
T ss_dssp CTTTCCEEEEETTTCC---------EEEEECCCSSCEEEEEECTTSS--CEEEEETTTEEEEECCSCCC
T ss_pred EcCCCEEEEEECCCCc---------EEEEEcCCCCCEEEEEEcCCCC--EEEEEecCCeEEEEECCCCC
Confidence 479999999999876 7888999999999999999996 89999999999999997654
No 116
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.9e-35 Score=248.76 Aligned_cols=270 Identities=10% Similarity=0.020 Sum_probs=202.0
Q ss_pred eecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEee
Q 017553 27 NKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG 105 (369)
Q Consensus 27 ~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~ 105 (369)
+.+++|...|++++|+| +| .++ +.+|+ ++....+.. .+...|.+++|+ |+|+ .||+++
T Consensus 46 ~~l~gh~~~v~~V~FsP----dg-------~~~~~~~~~---~~~~~~~~~----~~~~~V~~vawS--PdG~-~LAs~s 104 (588)
T 2j04_A 46 KDINCNSKNLFHVKEFP----LE-------FENKLDFEL---AQQNGLLNS----QPVCYPRVCKPS--PIDD-WMAVLS 104 (588)
T ss_dssp SCCSSBGGGTEEEEEEC----CC-------CCCTTTTSC---CCSSCSSTT----SCSCCEEEEEEC--SSSS-CEEEEE
T ss_pred ceecCCCccEEEEEECC----CC-------CcceEEEEe---CCCceEeec----CCCCcEEEEEEC--CCCC-EEEEEe
Confidence 45579999999999999 45 233 55555 332222211 246789999999 9999 999999
Q ss_pred cCCeEEEEEcCCccccceeecccc-----ceEEEEecCCCCceEEEEeCCCcEEEEEccCCcE-------EEEeec-cCC
Q 017553 106 INGIIRVIDVSNEKLHKSFVGHGD-----SINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC-------ILIFAG-AGG 172 (369)
Q Consensus 106 ~dg~i~vwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-------~~~~~~-~~~ 172 (369)
.||.|++||... ++..+. |.. .|.+++|+| ++++|++|+.||+|++||+.++.. +..+.. ..+
T Consensus 105 ~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSP-DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~g 180 (588)
T 2j04_A 105 NNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNP-IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAG 180 (588)
T ss_dssp TTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECS-SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTT
T ss_pred CCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcC-CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeeccccc
Confidence 999999999544 555666 665 599999999 999999999999999999998752 455521 126
Q ss_pred CCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeee-ccCCCceeeeeeeCc
Q 017553 173 HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA-SVHSNYVDCNRWLGD 251 (369)
Q Consensus 173 ~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~ 251 (369)
|...|.+++|+| ++ +++++.|++|++||+..... ......+ ..|...|.+++|+++
T Consensus 181 h~~~V~sVawSP-dg--Laass~D~tVrlWd~~~~~~--------------------~~~~~tL~~~h~~~V~svaFsg~ 237 (588)
T 2j04_A 181 SKDWVTHIVWYE-DV--LVAALSNNSVFSMTVSASSH--------------------QPVSRMIQNASRRKITDLKIVDY 237 (588)
T ss_dssp CCCCEEEEEEET-TE--EEEEETTCCEEEECCCSSSS--------------------CCCEEEEECCCSSCCCCEEEETT
T ss_pred ccccEEEEEEcC-Cc--EEEEeCCCeEEEEECCCCcc--------------------ccceeeecccccCcEEEEEEECC
Confidence 889999999999 77 88889999999999987320 0112334 478899999999988
Q ss_pred EEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEE--eecCCccEEEEecCCCeEEEEEccCC-----C
Q 017553 252 FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKF--SCDFHYNAAAIGNREGKIFVWELQSS-----P 324 (369)
Q Consensus 252 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--s~~~~~~~l~~~~~dg~i~i~d~~~~-----~ 324 (369)
.+++++ ++.|++||+.+.+ ......+|...+..++| +|++. .+++++.+|+ ++|....- .
T Consensus 238 ~LASa~-~~tIkLWd~~~~~---------~~~~~~gh~~~V~~va~~~s~d~~--~La~a~edG~-klw~~d~~~~spd~ 304 (588)
T 2j04_A 238 KVVLTC-PGYVHKIDLKNYS---------ISSLKTGSLENFHIIPLNHEKEST--ILLMSNKTSY-KVLLEDELHVTADN 304 (588)
T ss_dssp EEEEEC-SSEEEEEETTTTE---------EEEEECSCCSCCCEEEETTCSSCE--EEEECSSCEE-EEEESSSEEEECCC
T ss_pred EEEEEe-CCeEEEEECCCCe---------EEEEEcCCCceEEEEEeeeCCCCC--EEEEEcCCCC-EEEeeccEEECCCc
Confidence 899887 6999999998875 21222268899999999 99985 8999999999 99987420 0
Q ss_pred ce------eEEE-------eecCCCccceEEEEecCCCCEEEEeec
Q 017553 325 PV------LIAR-------LSHAQSKSPIRQTAMSYDGSTILSCCE 357 (369)
Q Consensus 325 ~~------~~~~-------~~~~~~~~~v~~~~~s~~~~~l~s~~~ 357 (369)
.. .+.. +....+...|.+++|||||+.+|+++.
T Consensus 305 ~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 305 IIAPYLEKKFKKWSTIWNEFNNYETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp SSHHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred eEEEEcCCEEEEEECCCCceeeeccceEEEEEEECCCCCEEEEEEe
Confidence 00 0000 000112345999999999999999873
No 117
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=3.2e-32 Score=232.72 Aligned_cols=264 Identities=13% Similarity=0.104 Sum_probs=206.0
Q ss_pred ccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeecc
Q 017553 49 FNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGH 127 (369)
Q Consensus 49 ~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 127 (369)
+.++++++.++ |++||+.+++.+..+.. + ..+.+++|+ |+|+.++++++.|+.|++||+.+++.+..+..+
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~~~~~-----~-~~~~~~~~s--~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~ 73 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTATIPV-----G-SNPMGAVIS--PDGTKVYVANAHSNDVSIIDTATNNVIATVPAG 73 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEEC-----S-SSEEEEEEC--TTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEEEeec-----C-CCcceEEEC--CCCCEEEEECCCCCeEEEEECCCCeEEEEEECC
Confidence 36788888888 99999999888777663 2 347788887 999834477889999999999999988888765
Q ss_pred ccceEEEEecCCCCceE-EEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEE-EEEeeCCcEEEEEcc
Q 017553 128 GDSINEIRTQPLKPSLV-VSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRI-ASCGMDNTVKIWSMK 205 (369)
Q Consensus 128 ~~~v~~~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~d~~v~i~d~~ 205 (369)
. .+.+++|+| +++.| ++++.++.|++||+.+++.+..+. +...+.+++|+| +++.+ ++++.++.|++||++
T Consensus 74 ~-~v~~~~~sp-dg~~l~~~~~~~~~v~v~d~~~~~~~~~~~----~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~ 146 (391)
T 1l0q_A 74 S-SPQGVAVSP-DGKQVYVTNMASSTLSVIDTTSNTVAGTVK----TGKSPLGLALSP-DGKKLYVTNNGDKTVSVINTV 146 (391)
T ss_dssp S-SEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEE----CSSSEEEEEECT-TSSEEEEEETTTTEEEEEETT
T ss_pred C-CccceEECC-CCCEEEEEECCCCEEEEEECCCCeEEEEEe----CCCCcceEEECC-CCCEEEEEeCCCCEEEEEECC
Confidence 4 899999999 66655 556677999999999999888876 556789999999 66655 788889999999998
Q ss_pred CceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEE-EEeecCCeEEEecCCCCCCCCCCCcccee
Q 017553 206 EFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFI-LSKSVDNEIVLWEPKMKEQSPGEGTADIL 282 (369)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 282 (369)
+++ .+..+..+ ..+.++.|+ ++++ ++++.++.|++||+++.+ .+
T Consensus 147 ~~~-----------------------~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~---------~~ 193 (391)
T 1l0q_A 147 TKA-----------------------VINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS---------VI 193 (391)
T ss_dssp TTE-----------------------EEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE---------EE
T ss_pred CCc-----------------------EEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCe---------EE
Confidence 843 22333333 345788887 6566 677889999999998765 33
Q ss_pred eeccCCCCCeeEEEEeecCCccEEEEec---CCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEE-EEeecC
Q 017553 283 QKYPVPECDIWFIKFSCDFHYNAAAIGN---REGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTI-LSCCED 358 (369)
Q Consensus 283 ~~~~~~~~~i~~~~~s~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~~~d 358 (369)
..+. +...+.+++|+|+++ ++++++ .++.|++||+.++ ..+..+. .+ ..+.+++|+|++++| ++++.|
T Consensus 194 ~~~~-~~~~~~~~~~~~~g~--~l~~~~~~~~~~~v~~~d~~~~--~~~~~~~--~~-~~~~~~~~s~dg~~l~~s~~~d 265 (391)
T 1l0q_A 194 DTVK-VEAAPSGIAVNPEGT--KAYVTNVDKYFNTVSMIDTGTN--KITARIP--VG-PDPAGIAVTPDGKKVYVALSFX 265 (391)
T ss_dssp EEEE-CSSEEEEEEECTTSS--EEEEEEECSSCCEEEEEETTTT--EEEEEEE--CC-SSEEEEEECTTSSEEEEEETTT
T ss_pred EEEe-cCCCccceEECCCCC--EEEEEecCcCCCcEEEEECCCC--eEEEEEe--cC-CCccEEEEccCCCEEEEEcCCC
Confidence 3333 345688999999997 666665 7899999999987 4455555 33 357899999999877 677889
Q ss_pred CeEEEEecCC
Q 017553 359 GAIWRWDAIP 368 (369)
Q Consensus 359 g~i~vw~~~~ 368 (369)
+.|++||+.+
T Consensus 266 ~~v~v~d~~~ 275 (391)
T 1l0q_A 266 NTVSVIDTAT 275 (391)
T ss_dssp TEEEEEETTT
T ss_pred CEEEEEECCC
Confidence 9999999864
No 118
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=5.6e-33 Score=233.67 Aligned_cols=258 Identities=9% Similarity=0.116 Sum_probs=181.0
Q ss_pred EEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCC
Q 017553 62 VYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKP 141 (369)
Q Consensus 62 iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 141 (369)
||++.+...+.... .|...|.+++|+ |+|+ +|++|+.+| +++|++.+++...... ...+..+++.+ ++
T Consensus 3 i~s~~~~~~~~~~~-----~h~~~V~~v~fs--~dg~-~la~g~~~~-~~iw~~~~~~~~~~~~--~~~~~~~~~~~-~~ 70 (355)
T 3vu4_A 3 LGSMITRNPIVPEN-----HVSNPVTDYEFN--QDQS-CLILSTLKS-FEIYNVHPVAHIMSQE--MRHLSKVRMLH-RT 70 (355)
T ss_dssp ---------------------CCCCCEEEEC--TTSS-EEEEECSSE-EEEEEETTEEEEEEEE--CSCCCEEEECT-TS
T ss_pred cccccccCCccccc-----cCCCceEEEEEC--CCCC-EEEEEcCCE-EEEEecCCcceeeeee--cCCeEEEEEcC-CC
Confidence 45555544444333 578899999998 9998 899888775 7899998876654433 23577888888 55
Q ss_pred ceE-EEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCC
Q 017553 142 SLV-VSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDL 220 (369)
Q Consensus 142 ~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~ 220 (369)
+.+ ++++.|+.|++||+.+++.+..+. +...|.+++|++ +. ++++ .|+.|++||+.+..
T Consensus 71 ~~~~~~~~~d~~v~iWd~~~~~~~~~~~----~~~~v~~v~~~~-~~--~~~~-~~~~i~i~d~~~~~------------ 130 (355)
T 3vu4_A 71 NYVAFVTGVKEVVHIWDDVKKQDVSRIK----VDAPVKDLFLSR-EF--IVVS-YGDVISVFKFGNPW------------ 130 (355)
T ss_dssp SEEEEECSSTTEEEEEETTTTEEEEEEE----CSSCEEEEEECS-SE--EEEE-ETTEEEEEESSTTC------------
T ss_pred CEEEEEECCccEEEEEECCCCcEEEEEE----CCCceEEEEEcC-CE--EEEE-EcCEEEEEECCCCc------------
Confidence 555 678888999999999999999886 777999999987 43 3333 48899999998831
Q ss_pred CCCCCCceeecceeeeccCCCceeeeeeeCcEEEE--eecCCeEEEecCCCCCCCCCC------Cccce-eeeccCCCCC
Q 017553 221 PSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILS--KSVDNEIVLWEPKMKEQSPGE------GTADI-LQKYPVPECD 291 (369)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~--~~~d~~i~i~d~~~~~~~~~~------~~~~~-~~~~~~~~~~ 291 (369)
..+..+.. ....++++..+++. ++.||.|++||+++....... ....+ +..+..|...
T Consensus 131 ----------~~~~~~~~---~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~ 197 (355)
T 3vu4_A 131 ----------KRITDDIR---FGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNP 197 (355)
T ss_dssp ----------CBSSCCEE---EEEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSC
T ss_pred ----------eeeEEecc---CCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCc
Confidence 01111111 22223333466665 688999999999876421100 00112 6678889999
Q ss_pred eeEEEEeecCCccEEEEecCCCe-EEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 292 IWFIKFSCDFHYNAAAIGNREGK-IFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 292 i~~~~~s~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
|.+++|+|+++ +|++++.||+ |++||+.+++ .+..+....|...|.+++|+|++++|++++.|+.|++||+..
T Consensus 198 v~~~~~s~~g~--~l~s~s~d~~~v~iwd~~~~~--~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~ 271 (355)
T 3vu4_A 198 IKMVRLNRKSD--MVATCSQDGTIIRVFKTEDGV--LVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFN 271 (355)
T ss_dssp EEEEEECTTSS--EEEEEETTCSEEEEEETTTCC--EEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSC
T ss_pred eEEEEECCCCC--EEEEEeCCCCEEEEEECCCCc--EEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccC
Confidence 99999999996 9999999998 9999999984 455554223779999999999999999999999999999864
No 119
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=2.4e-32 Score=219.79 Aligned_cols=266 Identities=10% Similarity=0.101 Sum_probs=182.4
Q ss_pred cceeeeeecccCCcC----eEEEEEeeccCCCccEEEEecCCcEEEEEecCC---ceeEEEeeeccC-------------
Q 017553 21 REYRVTNKLQEGKRP----LYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEG---GVIAALQSYVDE------------- 80 (369)
Q Consensus 21 ~~~~~~~~~~~h~~~----v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~---~~~~~~~~~~~~------------- 80 (369)
..++++..|+.-.+. +.++.|-..+. ....++++++..|++|+..++ +.+..+..+..+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 101 (356)
T 2w18_A 23 GNLQLVSELKNPSGSCSVDVSAMFWERAGC-KEPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNL 101 (356)
T ss_dssp -CEEEEEEECCCCSSCEEEEEEEEEC-----CEEEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSC
T ss_pred ceeeeeehhcCCCCCeEEEEeeeeeccCCC-CccEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccce
Confidence 456677777655443 55565654221 124788899999999999998 555554432211
Q ss_pred -------CcccceeEEEeeecCC----CccEEEEeec--------------------CCeEEEEEc-CCccccceeeccc
Q 017553 81 -------DKEESFYTVSWACNVD----GIPFLVAGGI--------------------NGIIRVIDV-SNEKLHKSFVGHG 128 (369)
Q Consensus 81 -------~~~~~v~~~~~~~~~~----g~~~l~~~~~--------------------dg~i~vwd~-~~~~~~~~~~~~~ 128 (369)
-+...|+.++++ |+ ++ ++++++. |+.|++|++ .+++.+..+.+|.
T Consensus 102 ~~~~~~~~~~~~v~sla~s--pd~~~~~~-~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~ 178 (356)
T 2w18_A 102 VCVALGNLEIREIRALFCS--SDDESEKQ-VLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMP 178 (356)
T ss_dssp EEEEECSSSEEEEEEECC--------CCE-EEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECC
T ss_pred eeeeeccccccceEEEEEC--CCcccccc-EEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCC
Confidence 112245555555 77 76 6666553 778888888 4467777777787
Q ss_pred cceEEEEecC--CCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEE------------EEEe
Q 017553 129 DSINEIRTQP--LKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRI------------ASCG 194 (369)
Q Consensus 129 ~~v~~~~~~~--~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l------------~~~~ 194 (369)
..++.++|+| .++.+|++++.|++|+|||+++|++++.+.....+...+.+++|+| ++.++ ++|+
T Consensus 179 ~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSp-dG~~lvs~s~~~~~w~laSGs 257 (356)
T 2w18_A 179 PEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSE-MGLLFIVLSHPCAKESESLRS 257 (356)
T ss_dssp CSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEE-TTEEEEEEC------------
T ss_pred CceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECC-CCCEEEEeccCCCcceeeccC
Confidence 7777777776 3567899999999999999999999999973111234678889999 77776 5678
Q ss_pred eCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeeeCcEEEEeecCCeEEEecCCCCCCCC
Q 017553 195 MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSP 274 (369)
Q Consensus 195 ~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 274 (369)
.|++|++||..+++........ ...+|...+.+..+++.++++++.|++|+|||+.+++
T Consensus 258 ~D~tIklWd~~tgk~l~v~~~~------------------~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk--- 316 (356)
T 2w18_A 258 PVFQLIVINPKTTLSVGVMLYC------------------LPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQ--- 316 (356)
T ss_dssp CCEEEEEEETTTTEEEEEEEEC------------------CCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCS---
T ss_pred CCcEEEEEECCCCEEEEEEEee------------------ccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCc---
Confidence 8999999999885432111000 0135555555666668899999999999999999987
Q ss_pred CCCccceeeeccCCCCCee-EEEEeecCCccEEEEecCCCeEEEEEc
Q 017553 275 GEGTADILQKYPVPECDIW-FIKFSCDFHYNAAAIGNREGKIFVWEL 320 (369)
Q Consensus 275 ~~~~~~~~~~~~~~~~~i~-~~~~s~~~~~~~l~~~~~dg~i~i~d~ 320 (369)
.+..+..|...+. .++|+|+++ +|++|+.|++|+|||+
T Consensus 317 ------~l~tL~gH~~~vvs~vafSPDG~--~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 317 ------CTALLPPVSDQHWSFVKWSGTDS--HLLAGQKDGNIFVYHY 355 (356)
T ss_dssp ------EEEEECCC--CCCCEEEECSSSS--EEEEECTTSCEEEEEE
T ss_pred ------EEEEecCCCCCeEEEEEECCCCC--EEEEEECCCcEEEecC
Confidence 7888888776555 589999997 9999999999999996
No 120
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-33 Score=235.44 Aligned_cols=233 Identities=10% Similarity=0.075 Sum_probs=180.8
Q ss_pred eeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEcc---------CC
Q 017553 91 WACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ---------TG 161 (369)
Q Consensus 91 ~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~---------~~ 161 (369)
.++.+++. +|++|+.||.|++||+.+++.+..+. ...|.++.|+| . +++++.|++|++|+.. ++
T Consensus 42 ~~~~~d~~-~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~-~---~~s~s~D~~i~~w~~~~~~~~~~~~~~ 114 (343)
T 3lrv_A 42 KSMYYDKW-VCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHP-A---IISRGPCNRLLLLYPGNQITILDSKTN 114 (343)
T ss_dssp SSSSEEEE-EEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCC-S---EEEECSTTEEEEEETTTEEEEEETTTC
T ss_pred hhhcCCCC-EEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCC-c---eEEecCCCeEEEEEccCceEEeecCCc
Confidence 33446777 99999999999999999998888776 56788999999 4 9999999999999765 45
Q ss_pred cEEEEeeccCCCCCcEEEEEecC-CCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeee-ccC
Q 017553 162 ICILIFAGAGGHRNEVLSVDFHP-SDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA-SVH 239 (369)
Q Consensus 162 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 239 (369)
+.+..+.. +|.+.|.+++|+| .++.++++++.||+|++||++++. ..... ..|
T Consensus 115 ~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-----------------------~~~~~~~~~ 169 (343)
T 3lrv_A 115 KVLREIEV--DSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDS-----------------------QYIVHSAKS 169 (343)
T ss_dssp CEEEEEEC--CCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSC-----------------------EEEEECCCS
T ss_pred ceeEEeec--CCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCc-----------------------EEEEEecCC
Confidence 54544443 5778999999998 246789999999999999999843 22222 335
Q ss_pred CCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccC-CCCCeeEEEEeecCCccEEEEecCCCeEE
Q 017553 240 SNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV-PECDIWFIKFSCDFHYNAAAIGNREGKIF 316 (369)
Q Consensus 240 ~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~~~l~~~~~dg~i~ 316 (369)
...+.+++|+ +.++++|+.|+.|++||+++++. ....+.. |...|.+++|+|++. +|++++ ++.|+
T Consensus 170 ~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~--------~~~~~~~~h~~~v~~l~fs~~g~--~l~s~~-~~~v~ 238 (343)
T 3lrv_A 170 DVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQ--------ASSRFPVDEEAKIKEVKFADNGY--WMVVEC-DQTVV 238 (343)
T ss_dssp SCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTS--------CCEECCCCTTSCEEEEEECTTSS--EEEEEE-SSBEE
T ss_pred CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCC--------CccEEeccCCCCEEEEEEeCCCC--EEEEEe-CCeEE
Confidence 5578999997 77999999999999999998763 2255666 889999999999996 888888 55999
Q ss_pred EEEccCCCceeE-EEeecCCCccce--EEEEecCCCCEEEEeec-CCeEEEEecCC
Q 017553 317 VWELQSSPPVLI-ARLSHAQSKSPI--RQTAMSYDGSTILSCCE-DGAIWRWDAIP 368 (369)
Q Consensus 317 i~d~~~~~~~~~-~~~~~~~~~~~v--~~~~~s~~~~~l~s~~~-dg~i~vw~~~~ 368 (369)
+||+++.+.... ..+. .|...+ .+++|+|+|++|++++. |+.|+||++..
T Consensus 239 iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~ 292 (343)
T 3lrv_A 239 CFDLRKDVGTLAYPTYT--IPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDK 292 (343)
T ss_dssp EEETTSSTTCBSSCCCB--C-----CCEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred EEEcCCCCcceeecccc--cccccccceEEEECCCCCEEEEecCCCCcEEEEEEcc
Confidence 999998754221 1111 222333 46999999999999998 99999998753
No 121
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=1.4e-33 Score=240.74 Aligned_cols=258 Identities=13% Similarity=0.052 Sum_probs=179.3
Q ss_pred CccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeec------CCCccEEEEeecCCeEEEEEcCCccc
Q 017553 48 YFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACN------VDGIPFLVAGGINGIIRVIDVSNEKL 120 (369)
Q Consensus 48 ~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~g~~~l~~~~~dg~i~vwd~~~~~~ 120 (369)
++.+||+++.|+ |+|||..+++............|.+.|++++|++. .+++ +|++|+.|++|+|||+.++.+
T Consensus 100 ~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~-~las~s~D~tv~~Wd~~~~~~ 178 (393)
T 4gq1_A 100 YSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ-VIASVGDDCTLIIWRLTDEGP 178 (393)
T ss_dssp EEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE-EEEEEETTSEEEEEEEETTEE
T ss_pred CCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC-EEEEEECCCeEEEEECCCCce
Confidence 467899999999 99999988876554333334579999999999831 2677 999999999999999998888
Q ss_pred cceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeec----------------------cCCCCCcEE
Q 017553 121 HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAG----------------------AGGHRNEVL 178 (369)
Q Consensus 121 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~----------------------~~~~~~~v~ 178 (369)
+..+..|...|.+++|+|.+..+|++++.|++|++||+++++....... ..+|...+.
T Consensus 179 ~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~ 258 (393)
T 4gq1_A 179 ILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLA 258 (393)
T ss_dssp EEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCS
T ss_pred eeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccce
Confidence 8888889999999999995556899999999999999998765443221 126788899
Q ss_pred EEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee---CcEEEE
Q 017553 179 SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILS 255 (369)
Q Consensus 179 ~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~ 255 (369)
++.|++.++..+++++.|+++++||+..+......... ..................+...+..+.+. +.++++
T Consensus 259 ~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 334 (393)
T 4gq1_A 259 NVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDS----TMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATA 334 (393)
T ss_dssp EEEEETTTTCEEEEECTTSEEEEEEC-----------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEE
T ss_pred eeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeee----cCccccEEEccccccccccCcceeEEEccCCCCEEEEE
Confidence 99997448899999999999999999875432211100 00000000001111222222222222222 346778
Q ss_pred eecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccC
Q 017553 256 KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS 322 (369)
Q Consensus 256 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~ 322 (369)
|+.|+.|++||+.+++ .......+...|.+++|+|+++ +||+++.+| +.+|.+..
T Consensus 335 gs~Dg~V~lwd~~~~~---------~~~~~~~~~~~V~svafspdG~--~LA~as~~G-v~lvrL~g 389 (393)
T 4gq1_A 335 HSQHGLIQLINTYEKD---------SNSIPIQLGMPIVDFCWHQDGS--HLAIATEGS-VLLTRLMG 389 (393)
T ss_dssp ETTTTEEEEEETTCTT---------CCEEEEECSSCEEEEEECTTSS--EEEEEESSE-EEEEEEGG
T ss_pred ECCCCEEEEEECCCCc---------EEEEecCCCCcEEEEEEcCCCC--EEEEEeCCC-eEEEEEeC
Confidence 8899999999998876 3445556678999999999997 899988766 66676543
No 122
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-32 Score=236.56 Aligned_cols=245 Identities=12% Similarity=0.060 Sum_probs=195.3
Q ss_pred cceeEEEeeecCCCccEEEEeecCCeEEEEEcCCcc---ccceeec----------------------------------
Q 017553 84 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK---LHKSFVG---------------------------------- 126 (369)
Q Consensus 84 ~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~---------------------------------- 126 (369)
.++.+++|+ ++|+ +|+++ .++.|++||+.+++ .+..+..
T Consensus 5 ~p~~~v~~s--~dg~-~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (450)
T 2vdu_B 5 HPLQNLLTS--RDGS-LVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNK 80 (450)
T ss_dssp CCCCEEEEC--SSSS-EEEEE-ETTEEEEEEEETTTEEEEEEEEECCC--------------------------------
T ss_pred ccEEEEEec--CCCC-EEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCc
Confidence 467788877 9998 66665 57899999999888 5554442
Q ss_pred --------------------cccceEEEEecCCCCceE-EEEeCCCcEEEEEcc--CCcEEEEeeccCCCCCcEEEEEec
Q 017553 127 --------------------HGDSINEIRTQPLKPSLV-VSASKDESVRLWNVQ--TGICILIFAGAGGHRNEVLSVDFH 183 (369)
Q Consensus 127 --------------------~~~~v~~~~~~~~~~~~l-~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~v~~~~~~ 183 (369)
|.+.|.+++|+| ++.+| ++++.||.|++||+. +++.+..+.. ..|...|.+++|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~s 158 (450)
T 2vdu_B 81 GDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTS-DESRLIACADSDKSLLVFDVDKTSKNVLKLRKR-FCFSKRPNAISIA 158 (450)
T ss_dssp -------------------CCCCCEEEEEECT-TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEE-EECSSCEEEEEEC
T ss_pred CccccccCccccCCCCCCCccCCceEEEEEcC-CCCEEEEEECCCCeEEEEECcCCCCceeeeeec-ccCCCCceEEEEc
Confidence 333699999999 77775 899999999999999 8888877752 1367899999999
Q ss_pred CCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeeeC-----cEEEEeec
Q 017553 184 PSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLG-----DFILSKSV 258 (369)
Q Consensus 184 ~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~l~~~~~ 258 (369)
| ++.+|++++.+|.+++|++..+... ..+...+..|...|.+++|++ ++|++++.
T Consensus 159 p-~~~~l~~~~~~g~v~~~~~~~~~~~-------------------~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~ 218 (450)
T 2vdu_B 159 E-DDTTVIIADKFGDVYSIDINSIPEE-------------------KFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDR 218 (450)
T ss_dssp T-TSSEEEEEETTSEEEEEETTSCCCS-------------------SCCCCCSEECSSCEEEEEEEECTTSCEEEEEEET
T ss_pred C-CCCEEEEEeCCCcEEEEecCCcccc-------------------cccceeeecccCceEEEEEcCCCCCCcEEEEEcC
Confidence 9 8899999999999999999873211 002335567899999999973 39999999
Q ss_pred CCeEEEecCCCCCCCCCCCccceeee-ccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeec----
Q 017553 259 DNEIVLWEPKMKEQSPGEGTADILQK-YPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSH---- 333 (369)
Q Consensus 259 d~~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---- 333 (369)
|+.|++||+++++ .+.. +..|...|.+++|+ +++ +|++++.|+.|++||+.+++.........
T Consensus 219 d~~i~vwd~~~~~---------~~~~~~~~h~~~v~~~~~s-d~~--~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~ 286 (450)
T 2vdu_B 219 DEHIKISHYPQCF---------IVDKWLFGHKHFVSSICCG-KDY--LLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKP 286 (450)
T ss_dssp TSCEEEEEESCTT---------CEEEECCCCSSCEEEEEEC-STT--EEEEEESSSEEEEEETTTCCEEEEEECHHHHGG
T ss_pred CCcEEEEECCCCc---------eeeeeecCCCCceEEEEEC-CCC--EEEEEeCCCeEEEEECCCCcEeeeecchhhhhh
Confidence 9999999998775 3444 55788999999999 876 99999999999999999985433322110
Q ss_pred -----------------CCCccceEEEEecCCCCEEEEee-cCCeEEEEec
Q 017553 334 -----------------AQSKSPIRQTAMSYDGSTILSCC-EDGAIWRWDA 366 (369)
Q Consensus 334 -----------------~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~vw~~ 366 (369)
......|.+++|+|++++|++++ .|+.|++|++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 287 YLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp GCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred hhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 02335799999999999999999 8999999998
No 123
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=7.5e-32 Score=226.64 Aligned_cols=273 Identities=15% Similarity=0.216 Sum_probs=194.7
Q ss_pred cccccccccccccccc--ccceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCc---------ee
Q 017553 4 TAIGCEPLVGSLTPSK--KREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGG---------VI 71 (369)
Q Consensus 4 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~---------~~ 71 (369)
+++++.+....+.... ...+++...+.+|...|++++|+|.. ++++|++++.|+ |++||+.++. ..
T Consensus 26 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~ 103 (351)
T 3f3f_A 26 VATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPE--YGRIIASASYDKTVKLWEEDPDQEECSGRRWNKL 103 (351)
T ss_dssp EEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGG--GCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEE
T ss_pred EEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCC--CCCEEEEEcCCCeEEEEecCCCcccccccCccee
Confidence 4556655554444332 33446777788999999999999931 378999999998 9999998763 23
Q ss_pred EEEeeeccCCcccceeEEEeeecCC--CccEEEEeecCCeEEEEEcCCccccceee-------------ccccceEEEEe
Q 017553 72 AALQSYVDEDKEESFYTVSWACNVD--GIPFLVAGGINGIIRVIDVSNEKLHKSFV-------------GHGDSINEIRT 136 (369)
Q Consensus 72 ~~~~~~~~~~~~~~v~~~~~~~~~~--g~~~l~~~~~dg~i~vwd~~~~~~~~~~~-------------~~~~~v~~~~~ 136 (369)
..+. .|...|.+++|+ |+ +. +|++++.||.|++||+.+++.+..+. .|...+.+++|
T Consensus 104 ~~~~-----~~~~~v~~~~~~--~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (351)
T 3f3f_A 104 CTLN-----DSKGSLYSVKFA--PAHLGL-KLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSW 175 (351)
T ss_dssp EEEC-----CCSSCEEEEEEC--CGGGCS-EEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEE
T ss_pred eeec-----ccCCceeEEEEc--CCCCCc-EEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEe
Confidence 3333 578899999998 77 87 99999999999999999887766554 57889999999
Q ss_pred cCC--CCceEEEEeCCCcEEEEEccCCcE--EEEeeccCCCCCcEEEEEecCCCc----eEEEEEeeCCcEEEEEccCce
Q 017553 137 QPL--KPSLVVSASKDESVRLWNVQTGIC--ILIFAGAGGHRNEVLSVDFHPSDI----YRIASCGMDNTVKIWSMKEFW 208 (369)
Q Consensus 137 ~~~--~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~----~~l~~~~~d~~v~i~d~~~~~ 208 (369)
+|. ++.++++++.|+.+.+|+...++. +..+. +|...|.+++|+| ++ .+|++++.||.|++||++...
T Consensus 176 ~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~i~~~~~~p-~~~~~~~~l~s~~~dg~i~iwd~~~~~ 251 (351)
T 3f3f_A 176 CPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLP---GHKSLIRSISWAP-SIGRWYQLIATGCKDGRIRIFKITEKL 251 (351)
T ss_dssp CCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECC---CCCSCEEEEEECC-CSSCSSEEEEEEETTSCEEEEEEEECC
T ss_pred ccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecC---CCCcceeEEEECC-CCCCcceEEEEEcCCCeEEEEeCCCCc
Confidence 993 388999999999998888877764 44444 7999999999999 65 899999999999999998732
Q ss_pred eeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeee------eCcEEEEeecCCeEEEecCCCCCCCCCCCcccee
Q 017553 209 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW------LGDFILSKSVDNEIVLWEPKMKEQSPGEGTADIL 282 (369)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 282 (369)
.... ...+......... .......+.....+.+|+....+ .+
T Consensus 252 ~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~ 299 (351)
T 3f3f_A 252 SPLA-----------------------SEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVE---------LL 299 (351)
T ss_dssp --------------------------------------------------------------CCSEEEE---------EE
T ss_pred Cccc-----------------------cCCcccceeccCCCcccccccccccccccceeeeeccccccc---------EE
Confidence 2111 0011111111111 11122233334455666555443 67
Q ss_pred eeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCC
Q 017553 283 QKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP 324 (369)
Q Consensus 283 ~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~ 324 (369)
..+..|...|++++|+|+++ +|++++.||.|++||+.+++
T Consensus 300 ~~~~~h~~~v~~~~~s~~~~--~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 300 SEHDDHNGEVWSVSWNLTGT--ILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp EEECTTSSCEEEEEECSSSC--CEEEEETTSCEEEEEECTTS
T ss_pred EEEecccccEEEEEEcCCCC--EEEEecCCCcEEEEecCcCc
Confidence 78888999999999999996 89999999999999999874
No 124
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=1.9e-30 Score=221.80 Aligned_cols=291 Identities=14% Similarity=0.115 Sum_probs=213.7
Q ss_pred cccceeeeeecccCCcCeEEEEEeeccCCCccEE-EEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCC
Q 017553 19 KKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVF-ATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD 96 (369)
Q Consensus 19 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~l-a~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 96 (369)
+....++...+..|. .+.+++|+| +++++ ++++.++ |++||+.+++.+..+.. ...+.+++|+ |+
T Consensus 18 d~~~~~~~~~~~~~~-~~~~~~~s~----dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~------~~~v~~~~~s--pd 84 (391)
T 1l0q_A 18 DVTSNKVTATIPVGS-NPMGAVISP----DGTKVYVANAHSNDVSIIDTATNNVIATVPA------GSSPQGVAVS--PD 84 (391)
T ss_dssp ETTTTEEEEEEECSS-SEEEEEECT----TSSEEEEEEGGGTEEEEEETTTTEEEEEEEC------SSSEEEEEEC--TT
T ss_pred ECCCCeEEEEeecCC-CcceEEECC----CCCEEEEECCCCCeEEEEECCCCeEEEEEEC------CCCccceEEC--CC
Confidence 344456666676665 589999999 57765 6776666 99999999888777652 2378888888 99
Q ss_pred CccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceE-EEEeCCCcEEEEEccCCcEEEEeeccCCCCC
Q 017553 97 GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLV-VSASKDESVRLWNVQTGICILIFAGAGGHRN 175 (369)
Q Consensus 97 g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 175 (369)
|+.++++++.++.|++||+.+++.+..+..+ ..+.+++|+| +++.| ++++.|+.|++||+.+++.+..+. ...
T Consensus 85 g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~----~~~ 158 (391)
T 1l0q_A 85 GKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSP-DGKKLYVTNNGDKTVSVINTVTKAVINTVS----VGR 158 (391)
T ss_dssp SSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEE----CCS
T ss_pred CCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEEEe----cCC
Confidence 9834456667799999999999888877754 5689999999 66655 788889999999999999888887 345
Q ss_pred cEEEEEecCCCceEE-EEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcE
Q 017553 176 EVLSVDFHPSDIYRI-ASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDF 252 (369)
Q Consensus 176 ~v~~~~~~~~~~~~l-~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~ 252 (369)
.+.+++|+| +++.+ ++++.++.|++||++++.. ...+ .+...+.+++|+ +++
T Consensus 159 ~~~~~~~~~-dg~~l~~~~~~~~~v~~~d~~~~~~-----------------------~~~~-~~~~~~~~~~~~~~g~~ 213 (391)
T 1l0q_A 159 SPKGIAVTP-DGTKVYVANFDSMSISVIDTVTNSV-----------------------IDTV-KVEAAPSGIAVNPEGTK 213 (391)
T ss_dssp SEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEE-----------------------EEEE-ECSSEEEEEEECTTSSE
T ss_pred CcceEEECC-CCCEEEEEeCCCCEEEEEECCCCeE-----------------------EEEE-ecCCCccceEECCCCCE
Confidence 679999999 66555 7788899999999988421 2222 245677888887 678
Q ss_pred EEEee---cCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEE
Q 017553 253 ILSKS---VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA 329 (369)
Q Consensus 253 l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 329 (369)
+++++ .++.|++||+.+++ .+..+..+ ..+.+++|+|+++ .++++++.|+.|++||+.+++ ...
T Consensus 214 l~~~~~~~~~~~v~~~d~~~~~---------~~~~~~~~-~~~~~~~~s~dg~-~l~~s~~~d~~v~v~d~~~~~--~~~ 280 (391)
T 1l0q_A 214 AYVTNVDKYFNTVSMIDTGTNK---------ITARIPVG-PDPAGIAVTPDGK-KVYVALSFXNTVSVIDTATNT--ITA 280 (391)
T ss_dssp EEEEEECSSCCEEEEEETTTTE---------EEEEEECC-SSEEEEEECTTSS-EEEEEETTTTEEEEEETTTTE--EEE
T ss_pred EEEEecCcCCCcEEEEECCCCe---------EEEEEecC-CCccEEEEccCCC-EEEEEcCCCCEEEEEECCCCc--EEE
Confidence 88877 68999999998775 45555544 3578899999997 244677899999999999884 444
Q ss_pred EeecCCCccce---------------EEEEecCCC----------CEEEEeecCCeEEEEecCC
Q 017553 330 RLSHAQSKSPI---------------RQTAMSYDG----------STILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 330 ~~~~~~~~~~v---------------~~~~~s~~~----------~~l~s~~~dg~i~vw~~~~ 368 (369)
.+. .+..+. ....|+.+. -.+...+.|..+++|++.+
T Consensus 281 ~~~--~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~ 342 (391)
T 1l0q_A 281 TMA--VGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGD 342 (391)
T ss_dssp EEE--CSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSS
T ss_pred EEE--CCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCC
Confidence 444 221111 111222221 3466677888999999854
No 125
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=1.8e-30 Score=209.00 Aligned_cols=223 Identities=14% Similarity=0.115 Sum_probs=151.8
Q ss_pred EEEEeecCCeEEEEEcCCc---cccceeecccc-------------------------ceEEEEecCCC----CceEEEE
Q 017553 100 FLVAGGINGIIRVIDVSNE---KLHKSFVGHGD-------------------------SINEIRTQPLK----PSLVVSA 147 (369)
Q Consensus 100 ~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~-------------------------~v~~~~~~~~~----~~~l~s~ 147 (369)
.+++++ ...|++|+..++ ++++++..|.. .|.+++++| + +..++++
T Consensus 56 ~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~sp-d~~~~~~~l~s~ 133 (356)
T 2w18_A 56 CIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSS-DDESEKQVLLKS 133 (356)
T ss_dssp EEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC-------CCEEEEEE
T ss_pred EEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECC-CccccccEEEeC
Confidence 455555 569999999988 77777777664 455666677 6 6667765
Q ss_pred eC--------------------CCcEEEEEc-cCCcEEEEeeccCCCCCcEEEEEecC--CCceEEEEEeeCCcEEEEEc
Q 017553 148 SK--------------------DESVRLWNV-QTGICILIFAGAGGHRNEVLSVDFHP--SDIYRIASCGMDNTVKIWSM 204 (369)
Q Consensus 148 ~~--------------------dg~i~vwd~-~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~d~~v~i~d~ 204 (369)
+. |+.|++|++ .+|+.+..+. +|...+..++|+| .++.+|++++.|++|++||+
T Consensus 134 g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~---~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl 210 (356)
T 2w18_A 134 GNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQF---LMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNL 210 (356)
T ss_dssp EEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEE---ECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEET
T ss_pred CCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeec---cCCCceeeEEeeccCCCCceEEEecCCCcEEEEEC
Confidence 53 777777777 3466666555 5666666666665 35578999999999999999
Q ss_pred cCceeeeeeeeeccCCCCCCCCceeecceeeeccCC---Cceeeeeee--CcEE------------EEeecCCeEEEecC
Q 017553 205 KEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS---NYVDCNRWL--GDFI------------LSKSVDNEIVLWEP 267 (369)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~--~~~l------------~~~~~d~~i~i~d~ 267 (369)
++++ .+..+..|. ..+.+++|+ +.++ ++|+.|++|++||.
T Consensus 211 ~TGk-----------------------~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~ 267 (356)
T 2w18_A 211 KTGQ-----------------------LLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINP 267 (356)
T ss_dssp TTCC-----------------------EEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEET
T ss_pred CCCc-----------------------EEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEEC
Confidence 9843 344444333 244555665 4443 67889999999999
Q ss_pred CCCCCCCCCCccceeeec-----cCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceE-
Q 017553 268 KMKEQSPGEGTADILQKY-----PVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIR- 341 (369)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~- 341 (369)
.+++ .+..+ .+|...+. ..+.++. ++++++.|++|+|||+.++ +.+..+. +|...+.
T Consensus 268 ~tgk---------~l~v~~~~~p~Gh~~~~l--sg~~sg~--~lASgS~DgTIkIWDl~tG--k~l~tL~--gH~~~vvs 330 (356)
T 2w18_A 268 KTTL---------SVGVMLYCLPPGQAGRFL--EGDVKDH--CAAAILTSGTIAIWDLLLG--QCTALLP--PVSDQHWS 330 (356)
T ss_dssp TTTE---------EEEEEEECCCTTCCCCEE--EEEEETT--EEEEEETTSCEEEEETTTC--SEEEEEC--CC--CCCC
T ss_pred CCCE---------EEEEEEeeccCCCcceeE--ccccCCC--EEEEEcCCCcEEEEECCCC--cEEEEec--CCCCCeEE
Confidence 8876 22221 23333333 3333343 8999999999999999999 4566676 6666554
Q ss_pred EEEecCCCCEEEEeecCCeEEEEecC
Q 017553 342 QTAMSYDGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 342 ~~~~s~~~~~l~s~~~dg~i~vw~~~ 367 (369)
.++|+|||++|++|+.|++|+|||+.
T Consensus 331 ~vafSPDG~~LaSGS~D~TIklWd~~ 356 (356)
T 2w18_A 331 FVKWSGTDSHLLAGQKDGNIFVYHYS 356 (356)
T ss_dssp EEEECSSSSEEEEECTTSCEEEEEEC
T ss_pred EEEECCCCCEEEEEECCCcEEEecCC
Confidence 68999999999999999999999963
No 126
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=5.6e-30 Score=221.82 Aligned_cols=237 Identities=11% Similarity=0.065 Sum_probs=188.0
Q ss_pred cceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccc-----eeeccccceEEEEecCCCCceEEEEeCCCcEEEEEc
Q 017553 84 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHK-----SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 158 (369)
Q Consensus 84 ~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~ 158 (369)
..+.+++|+ |++. ++++++.++.|++||+.+++... .+.+|...|.+++|+| ++.++++++.|+.|++||+
T Consensus 123 ~~~~~~~~s--~~~~-~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~v~~~d~ 198 (433)
T 3bws_A 123 FQPKSVRFI--DNTR-LAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPE-HNELWVSQMQANAVHVFDL 198 (433)
T ss_dssp SCBCCCEES--SSSE-EEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGG-GTEEEEEEGGGTEEEEEET
T ss_pred CCceEEEEe--CCCe-EEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcC-CCEEEEEECCCCEEEEEEC
Confidence 345567776 7666 88888899999999999888766 4557888999999999 8899999999999999999
Q ss_pred cCCcEEEEeeccCCCCCcEEEEEecCCCceEE-EEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeec
Q 017553 159 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRI-ASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS 237 (369)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (369)
++++.+..+. .|...+.+++|+| ++..+ ++++.|+.|++||++++. .+..+.
T Consensus 199 ~~~~~~~~~~---~~~~~~~~~~~~~-~~~~l~~~~~~~~~i~~~d~~~~~-----------------------~~~~~~ 251 (433)
T 3bws_A 199 KTLAYKATVD---LTGKWSKILLYDP-IRDLVYCSNWISEDISVIDRKTKL-----------------------EIRKTD 251 (433)
T ss_dssp TTCCEEEEEE---CSSSSEEEEEEET-TTTEEEEEETTTTEEEEEETTTTE-----------------------EEEECC
T ss_pred CCceEEEEEc---CCCCCeeEEEEcC-CCCEEEEEecCCCcEEEEECCCCc-----------------------EEEEec
Confidence 9999988887 6889999999999 55555 566689999999998742 222222
Q ss_pred cCCCceeeeeee--CcEEEEee--------cCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEE
Q 017553 238 VHSNYVDCNRWL--GDFILSKS--------VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAA 307 (369)
Q Consensus 238 ~~~~~v~~~~~~--~~~l~~~~--------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~ 307 (369)
. ...+.+++|+ ++++++++ .|+.|++||+++++ .+... .+...+..++|+|+++ .+++
T Consensus 252 ~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~---------~~~~~-~~~~~~~~~~~~~~g~-~l~~ 319 (433)
T 3bws_A 252 K-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEK---------LIDTI-GPPGNKRHIVSGNTEN-KIYV 319 (433)
T ss_dssp C-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTE---------EEEEE-EEEECEEEEEECSSTT-EEEE
T ss_pred C-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCc---------EEeec-cCCCCcceEEECCCCC-EEEE
Confidence 2 3457888887 66888877 48899999998765 23332 2334678899999986 3667
Q ss_pred EecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeec---------------CCeEEEEecCC
Q 017553 308 IGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCE---------------DGAIWRWDAIP 368 (369)
Q Consensus 308 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~---------------dg~i~vw~~~~ 368 (369)
+++.++.|++||+.+++ ....+. +...+.+++|+|+|++|++++. ||.|++||+.+
T Consensus 320 ~~~~~~~v~v~d~~~~~--~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~ 390 (433)
T 3bws_A 320 SDMCCSKIEVYDLKEKK--VQKSIP---VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT 390 (433)
T ss_dssp EETTTTEEEEEETTTTE--EEEEEE---CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT
T ss_pred EecCCCEEEEEECCCCc--EEEEec---CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCC
Confidence 77999999999999873 444444 3367999999999999988876 57999999864
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.97 E-value=1.3e-28 Score=217.32 Aligned_cols=307 Identities=11% Similarity=0.065 Sum_probs=221.0
Q ss_pred cccceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEe--cCCceeEEEeeeccCCcccceeEEEeeecC
Q 017553 19 KKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQC--LEGGVIAALQSYVDEDKEESFYTVSWACNV 95 (369)
Q Consensus 19 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 95 (369)
+....++..++..+.. +..++|+| +|++|++++.++ |.+||+ .+++.+..+. +......++|+ |
T Consensus 165 D~~t~~~~~~i~~g~~-~~~v~~sp----dg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~------~g~~p~~va~s--p 231 (543)
T 1nir_A 165 DGDSKKIVKVIDTGYA-VHISRMSA----SGRYLLVIGRDARIDMIDLWAKEPTKVAEIK------IGIEARSVESS--K 231 (543)
T ss_dssp ETTTCCEEEEEECSTT-EEEEEECT----TSCEEEEEETTSEEEEEETTSSSCEEEEEEE------CCSEEEEEEEC--C
T ss_pred ECCCceEEEEEecCcc-cceEEECC----CCCEEEEECCCCeEEEEECcCCCCcEEEEEe------cCCCcceEEeC--C
Confidence 3445566667763333 89999999 689999998888 999999 7777776665 23456677776 8
Q ss_pred ----CCccEEEEee-cCCeEEEEEcCCccccceeec----------ccc-ceEEEEecCCCCceEEEEeCCCcEEEEEcc
Q 017553 96 ----DGIPFLVAGG-INGIIRVIDVSNEKLHKSFVG----------HGD-SINEIRTQPLKPSLVVSASKDESVRLWNVQ 159 (369)
Q Consensus 96 ----~g~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~----------~~~-~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~ 159 (369)
+|+ +|++++ .+++|.+||..++++++.+.. |.. .+..+.++|++..++++...++.|.+||..
T Consensus 232 ~~~~dg~-~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~ 310 (543)
T 1nir_A 232 FKGYEDR-YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYK 310 (543)
T ss_dssp STTCTTT-EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECT
T ss_pred CcCCCCC-EEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEec
Confidence 999 777776 589999999999988887764 223 788999999666778888899999999998
Q ss_pred CCcEEE--EeeccCCCCCcEEEEEecCCCceEEE-EEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeee
Q 017553 160 TGICIL--IFAGAGGHRNEVLSVDFHPSDIYRIA-SCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA 236 (369)
Q Consensus 160 ~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (369)
+++.+. .+. +...+.++.|+| ++++++ ++..+++|.+||..+++....... ..
T Consensus 311 ~~~~l~~~~i~----~~~~~~~~~~sp-dg~~l~va~~~~~~v~v~D~~tg~l~~~i~~-------------------g~ 366 (543)
T 1nir_A 311 DIDNLTVTSIG----AAPFLHDGGWDS-SHRYFMTAANNSNKVAVIDSKDRRLSALVDV-------------------GK 366 (543)
T ss_dssp TSSSCEEEEEE----CCSSCCCEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEEC-------------------SS
T ss_pred CCCcceeEEec----cCcCccCceECC-CCCEEEEEecCCCeEEEEECCCCeEEEeecc-------------------CC
Confidence 866544 333 566788999999 777655 455689999999998542211100 00
Q ss_pred ccCCCceeeeee-e-CcEEEEee-cCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEec---
Q 017553 237 SVHSNYVDCNRW-L-GDFILSKS-VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN--- 310 (369)
Q Consensus 237 ~~~~~~v~~~~~-~-~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~--- 310 (369)
..|......+.. + +..++++. .|++|.+||+.+.... ....+.++.+..+...+..++++|+++ .|++++
T Consensus 367 ~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~--~~~~~~v~~l~~~g~~~~~v~~~pdg~--~l~v~~~~~ 442 (543)
T 1nir_A 367 TPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHP--QYAWKKVAELQGQGGGSLFIKTHPKSS--HLYVDTTFN 442 (543)
T ss_dssp SBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCT--TTBTSEEEEEECSCSCCCCEECCTTCC--EEEECCTTC
T ss_pred CCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCc--hhcCeEEEEEEcCCCCceEEEcCCCCC--cEEEecCCC
Confidence 124433333321 2 44566665 5899999999873211 111347888888888889999999997 788776
Q ss_pred ----CCCeEEEEEccCCCceeEEEee------cCCCccceEEEEecCCCCEEEEee-----cCCeEEEEecCC
Q 017553 311 ----REGKIFVWELQSSPPVLIARLS------HAQSKSPIRQTAMSYDGSTILSCC-----EDGAIWRWDAIP 368 (369)
Q Consensus 311 ----~dg~i~i~d~~~~~~~~~~~~~------~~~~~~~v~~~~~s~~~~~l~s~~-----~dg~i~vw~~~~ 368 (369)
.+++|.+||+.+.+... ..+. ...+...+..++|+|+|+.|+++. .|+.|.|||.++
T Consensus 443 ~~~~~~~~v~v~d~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t 514 (543)
T 1nir_A 443 PDARISQSVAVFDLKNLDAKY-QVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKT 514 (543)
T ss_dssp SSHHHHTCEEEEETTCTTSCC-EEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTT
T ss_pred CCcccCceEEEEECCCCCCCe-EEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCC
Confidence 26799999999987431 2221 124457899999999999988763 479999999875
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.97 E-value=4.3e-28 Score=207.90 Aligned_cols=277 Identities=9% Similarity=0.012 Sum_probs=203.0
Q ss_pred cCeEEEEEeeccCCCccEEEEec-----CC----cEEEEEe--cCCceeEE--EeeeccCCcccceeEEEeeec------
Q 017553 34 RPLYAVVFNFIDSRYFNVFATVG-----GN----RVTVYQC--LEGGVIAA--LQSYVDEDKEESFYTVSWACN------ 94 (369)
Q Consensus 34 ~~v~~~~~s~~~~~~~~~la~~~-----~~----~v~iw~~--~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~------ 94 (369)
..|...+|++. ..+++++++ ++ .++|||+ .+++.+.. +. .|...+..+++.+.
T Consensus 63 ~~~~~~~w~~~---g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~d~~~~~ 134 (415)
T 2hqs_A 63 QEVQPAAWSAL---GIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYK-----VNKQWLRYAGHTASDEVFEK 134 (415)
T ss_dssp GGCCHHHHHTT---TCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEE-----ECGGGHHHHHHHHHHHHHHH
T ss_pred cCcCHHHHHhc---CCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEE-----cChhHHHHHHHHHHHHHHHH
Confidence 46777788773 235676775 23 3899999 88886633 44 34555666665521
Q ss_pred ------CCCccEEEEeecC------CeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCC---cEEEEEcc
Q 017553 95 ------VDGIPFLVAGGIN------GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDE---SVRLWNVQ 159 (369)
Q Consensus 95 ------~~g~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg---~i~vwd~~ 159 (369)
+.+. .++.++.+ +.|++||+. +.....+.+|...+.+++|+| +++.|++++.++ .|++||+.
T Consensus 135 ~~g~~~~~~~-~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Sp-dg~~la~~s~~~~~~~i~~~d~~ 211 (415)
T 2hqs_A 135 LTGIKGAFRT-RIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLA 211 (415)
T ss_dssp HHSSCCCTTC-EEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETT
T ss_pred HcCCCCcCCC-EEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcC-CCCEEEEEEecCCCcEEEEEECC
Confidence 1244 45555443 799999986 555778888999999999999 889999999875 99999999
Q ss_pred CCcEEEEeeccCCCCCcEEEEEecCCCceEEE-EEeeCCc--EEEEEccCceeeeeeeeeccCCCCCCCCceeecceeee
Q 017553 160 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIA-SCGMDNT--VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA 236 (369)
Q Consensus 160 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~d~~--v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (369)
+++... +. .|...+.+++|+| +++.|+ +++.++. |++||+++++ ...+
T Consensus 212 tg~~~~-l~---~~~~~~~~~~~sp-dg~~la~~~~~~g~~~i~~~d~~~~~------------------------~~~l 262 (415)
T 2hqs_A 212 NGAVRQ-VA---SFPRHNGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASGQ------------------------IRQV 262 (415)
T ss_dssp TCCEEE-EE---CCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCC------------------------EEEC
T ss_pred CCcEEE-ee---cCCCcccCEEEcC-CCCEEEEEEecCCCceEEEEECCCCC------------------------EEeC
Confidence 988764 44 5888999999999 777666 6666654 9999998732 2345
Q ss_pred ccCCCceeeeeee--CcEEEEeec-CC--eEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecC
Q 017553 237 SVHSNYVDCNRWL--GDFILSKSV-DN--EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR 311 (369)
Q Consensus 237 ~~~~~~v~~~~~~--~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~ 311 (369)
..|...+.++.|+ +++|++++. ++ .|.+||+.+++ ...+..+...+..++|+|+++ +|++++.
T Consensus 263 ~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~----------~~~l~~~~~~~~~~~~spdG~--~l~~~~~ 330 (415)
T 2hqs_A 263 TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA----------PQRITWEGSQNQDADVSSDGK--FMVMVSS 330 (415)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC----------CEECCCSSSEEEEEEECTTSS--EEEEEEE
T ss_pred cCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC----------EEEEecCCCcccCeEECCCCC--EEEEEEC
Confidence 5677888999997 777887776 44 67888887764 223334456788899999997 6666554
Q ss_pred C---CeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCC---eEEEEecCC
Q 017553 312 E---GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDG---AIWRWDAIP 368 (369)
Q Consensus 312 d---g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg---~i~vw~~~~ 368 (369)
+ ..|++||+.+++. ..+. .+ ..+.+++|+|||++|++++.++ .|++||+..
T Consensus 331 ~~g~~~i~~~d~~~~~~---~~l~--~~-~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g 387 (415)
T 2hqs_A 331 NGGQQHIAKQDLATGGV---QVLS--ST-FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG 387 (415)
T ss_dssp CSSCEEEEEEETTTCCE---EECC--CS-SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTS
T ss_pred cCCceEEEEEECCCCCE---EEec--CC-CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCC
Confidence 3 5899999998853 3343 33 3799999999999999998877 799999753
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=1.9e-26 Score=203.50 Aligned_cols=280 Identities=10% Similarity=0.055 Sum_probs=208.3
Q ss_pred EEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEc--C
Q 017553 40 VFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDV--S 116 (369)
Q Consensus 40 ~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~--~ 116 (369)
+|+| ++.++++++.++ |.+||..+++.+..+.. .+ .+..++++ |+|+ +|++++.|+.|++||+ .
T Consensus 144 ~~~p----~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~----g~--~~~~v~~s--pdg~-~l~v~~~d~~V~v~D~~~~ 210 (543)
T 1nir_A 144 DLDL----PNLFSVTLRDAGQIALVDGDSKKIVKVIDT----GY--AVHISRMS--ASGR-YLLVIGRDARIDMIDLWAK 210 (543)
T ss_dssp CCCG----GGEEEEEEGGGTEEEEEETTTCCEEEEEEC----ST--TEEEEEEC--TTSC-EEEEEETTSEEEEEETTSS
T ss_pred ccCC----CCEEEEEEcCCCeEEEEECCCceEEEEEec----Cc--ccceEEEC--CCCC-EEEEECCCCeEEEEECcCC
Confidence 3788 578888888887 99999999998887763 12 26677777 9999 9999999999999999 7
Q ss_pred CccccceeeccccceEEEEecCC---CCceEEEEe-CCCcEEEEEccCCcEEEEeeccC-------CC-CCcEEEEEecC
Q 017553 117 NEKLHKSFVGHGDSINEIRTQPL---KPSLVVSAS-KDESVRLWNVQTGICILIFAGAG-------GH-RNEVLSVDFHP 184 (369)
Q Consensus 117 ~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~-------~~-~~~v~~~~~~~ 184 (369)
+++.+.++. +...+..++|+|. +++++++++ .+++|.+||..+++++..+.... .| ...+..+.++|
T Consensus 211 t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~ 289 (543)
T 1nir_A 211 EPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASH 289 (543)
T ss_dssp SCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECS
T ss_pred CCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECC
Confidence 888888887 4556799999981 355666666 58999999999999998886311 02 23789999999
Q ss_pred CCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEe-ecCCe
Q 017553 185 SDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSK-SVDNE 261 (369)
Q Consensus 185 ~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~-~~d~~ 261 (369)
++..++++...++.|.+||..+.... .+..+ .+...+..+.|+ +++++++ ..+++
T Consensus 290 ~~~~~~vs~~~~g~i~vvd~~~~~~l---------------------~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~ 347 (543)
T 1nir_A 290 EHPEFIVNVKETGKVLLVNYKDIDNL---------------------TVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNK 347 (543)
T ss_dssp SSSEEEEEETTTTEEEEEECTTSSSC---------------------EEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTE
T ss_pred CCCEEEEEECCCCeEEEEEecCCCcc---------------------eeEEe-ccCcCccCceECCCCCEEEEEecCCCe
Confidence 67778888888999999999873211 01122 245567778887 6766655 45899
Q ss_pred EEEecCCCCCCCCCCCccceeeeccC----CCCCeeEEEEeecCCccEEEEec-CCCeEEEEEccCCC-----ceeEEEe
Q 017553 262 IVLWEPKMKEQSPGEGTADILQKYPV----PECDIWFIKFSCDFHYNAAAIGN-REGKIFVWELQSSP-----PVLIARL 331 (369)
Q Consensus 262 i~i~d~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~s~~~~~~~l~~~~-~dg~i~i~d~~~~~-----~~~~~~~ 331 (369)
|.+||+.+++ ++..+.. |......+ ++|++. .+++++. .|++|.+||+.+.. .+.+..+
T Consensus 348 v~v~D~~tg~---------l~~~i~~g~~ph~g~g~~~-~~p~~g-~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l 416 (543)
T 1nir_A 348 VAVIDSKDRR---------LSALVDVGKTPHPGRGANF-VHPKYG-PVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAEL 416 (543)
T ss_dssp EEEEETTTTE---------EEEEEECSSSBCCTTCEEE-EETTTE-EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEE
T ss_pred EEEEECCCCe---------EEEeeccCCCCCCCCCccc-CCCCCc-cEEEeccCCCceEEEEEeCCCCCchhcCeEEEEE
Confidence 9999999886 3444432 32222222 467644 3667765 68999999998821 3567777
Q ss_pred ecCCCccceEEEEecCCCCEEEEee-------cCCeEEEEecCC
Q 017553 332 SHAQSKSPIRQTAMSYDGSTILSCC-------EDGAIWRWDAIP 368 (369)
Q Consensus 332 ~~~~~~~~v~~~~~s~~~~~l~s~~-------~dg~i~vw~~~~ 368 (369)
. .|...+..++++|++++|++++ .++.|.|||+.+
T Consensus 417 ~--~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~ 458 (543)
T 1nir_A 417 Q--GQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKN 458 (543)
T ss_dssp E--CSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTC
T ss_pred E--cCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCC
Confidence 7 6667788899999999999987 377999999875
No 130
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.96 E-value=4.6e-26 Score=190.05 Aligned_cols=279 Identities=10% Similarity=0.057 Sum_probs=192.6
Q ss_pred ccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccc-cceeec
Q 017553 49 FNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL-HKSFVG 126 (369)
Q Consensus 49 ~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~ 126 (369)
+.++++++.++ |.+||..+++....+.. +.... .++|+ |+|+.+++++..++.|.+||+.+++. ...+..
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~-----~~~~~-~~~~s--~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTLEILNQITL-----GYDFV-DTAIT--SDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTCCEEEEEEC-----CCCEE-EEEEC--SSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred CEEEEEecCCCeEEEEeCcccceeeeEEc-----cCCcc-eEEEc--CCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 55677777776 99999999888776652 23344 67776 99983444444589999999999887 777776
Q ss_pred cccceEEEEecCCCCceEEEEeCCC---cEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCce-EEEEEeeCCc-EEE
Q 017553 127 HGDSINEIRTQPLKPSLVVSASKDE---SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY-RIASCGMDNT-VKI 201 (369)
Q Consensus 127 ~~~~v~~~~~~~~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~d~~-v~i 201 (369)
+..+..+++|+| ++++++++..++ .|.+||+.+++.+..+. ....+.+++|+| +++ ++++...++. |.+
T Consensus 82 ~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~----~~~~~~~~~~sp-dg~~l~~~~~~~~~~i~~ 155 (331)
T 3u4y_A 82 GQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP----IPYDAVGIAISP-NGNGLILIDRSSANTVRR 155 (331)
T ss_dssp CSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEEEEE----CCTTEEEEEECT-TSSCEEEEEETTTTEEEE
T ss_pred CCCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEEEEE----CCCCccceEECC-CCCEEEEEecCCCceEEE
Confidence 766666699999 888888655553 89999999999888776 445678999999 665 4555555688 999
Q ss_pred EEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEE-EeecCCeEEEecCCCCCCCCCCCc
Q 017553 202 WSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFIL-SKSVDNEIVLWEPKMKEQSPGEGT 278 (369)
Q Consensus 202 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~ 278 (369)
|++......... . ............+.|+ +++++ ++..++.|++||+.+++.
T Consensus 156 ~~~~~~g~~~~~------------------~-~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~------ 210 (331)
T 3u4y_A 156 FKIDADGVLFDT------------------G-QEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN------ 210 (331)
T ss_dssp EEECTTCCEEEE------------------E-EEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS------
T ss_pred EEECCCCcEeec------------------C-CccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc------
Confidence 999863211110 0 1111233446778887 66554 455689999999987652
Q ss_pred cceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecC--CCcc---ceEEEEecCCCCEEE
Q 017553 279 ADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHA--QSKS---PIRQTAMSYDGSTIL 353 (369)
Q Consensus 279 ~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~---~v~~~~~s~~~~~l~ 353 (369)
...+..+... ..+..++|+|+++ .++++...++.|.+||+.+++...+..+... .+.. ....++|+|||++|+
T Consensus 211 ~~~~~~~~~~-~~~~~~~~spdg~-~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 288 (331)
T 3u4y_A 211 ITLLNAVGTN-NLPGTIVVSRDGS-TVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLF 288 (331)
T ss_dssp CEEEEEEECS-SCCCCEEECTTSS-EEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEE
T ss_pred cceeeeccCC-CCCceEEECCCCC-EEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEE
Confidence 1114444433 5668899999997 2334455678899999998865445444421 1112 235689999999886
Q ss_pred Eee-cCCeEEEEecCC
Q 017553 354 SCC-EDGAIWRWDAIP 368 (369)
Q Consensus 354 s~~-~dg~i~vw~~~~ 368 (369)
+++ .++.|.+||+..
T Consensus 289 v~~~~~~~v~v~d~~~ 304 (331)
T 3u4y_A 289 ISANISRELKVFTISG 304 (331)
T ss_dssp EEETTTTEEEEEETTS
T ss_pred EecCCCCcEEEEEecC
Confidence 555 566999999864
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=1.1e-26 Score=199.14 Aligned_cols=266 Identities=13% Similarity=0.051 Sum_probs=196.7
Q ss_pred eecccCCcCeEEEEEeecc----------CCCccEEEEecCC------c-EEEEEecCCceeEEEeeeccCCcccceeEE
Q 017553 27 NKLQEGKRPLYAVVFNFID----------SRYFNVFATVGGN------R-VTVYQCLEGGVIAALQSYVDEDKEESFYTV 89 (369)
Q Consensus 27 ~~~~~h~~~v~~~~~s~~~----------~~~~~~la~~~~~------~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~ 89 (369)
..+.+|...+..+++++.+ ...+..++.++.+ + |++||+. +.....+. .|...+.++
T Consensus 111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~-----~~~~~v~~~ 184 (415)
T 2hqs_A 111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVH-----RSPQPLMSP 184 (415)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEE-----EESSCEEEE
T ss_pred eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCC-CCCCEEEe-----CCCCcceee
Confidence 5577888888888887521 0014556655542 5 9999976 44455555 356788889
Q ss_pred EeeecCCCccEEEEeecCC---eEEEEEcCCccccceeeccccceEEEEecCCCCceEE-EEeCCCc--EEEEEccCCcE
Q 017553 90 SWACNVDGIPFLVAGGING---IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVV-SASKDES--VRLWNVQTGIC 163 (369)
Q Consensus 90 ~~~~~~~g~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~dg~--i~vwd~~~~~~ 163 (369)
+|+ |+|+ .|++++.++ .|++||+.+++.. .+..|...+.+++|+| +++.|+ +++.++. |++||+.+++.
T Consensus 185 ~~S--pdg~-~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~sp-dg~~la~~~~~~g~~~i~~~d~~~~~~ 259 (415)
T 2hqs_A 185 AWS--PDGS-KLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASGQI 259 (415)
T ss_dssp EEC--TTSS-EEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCE
T ss_pred EEc--CCCC-EEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcC-CCCEEEEEEecCCCceEEEEECCCCCE
Confidence 888 9999 888888775 9999999988764 5667888999999999 777666 7776665 99999998876
Q ss_pred EEEeeccCCCCCcEEEEEecCCCceEEEEEee-CC--cEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCC
Q 017553 164 ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM-DN--TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 240 (369)
Q Consensus 164 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (369)
..+. .|...+.+++|+| +++.|++++. ++ .|.+||+.++. ...+..+.
T Consensus 260 -~~l~---~~~~~~~~~~~sp-dg~~l~~~s~~~g~~~i~~~d~~~~~------------------------~~~l~~~~ 310 (415)
T 2hqs_A 260 -RQVT---DGRSNNTEPTWFP-DSQNLAFTSDQAGRPQVYKVNINGGA------------------------PQRITWEG 310 (415)
T ss_dssp -EECC---CCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSC------------------------CEECCCSS
T ss_pred -EeCc---CCCCcccceEECC-CCCEEEEEECCCCCcEEEEEECCCCC------------------------EEEEecCC
Confidence 4444 5888999999999 7887777775 45 57777887632 22334466
Q ss_pred Cceeeeeee--CcEEEEeecC---CeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCC--
Q 017553 241 NYVDCNRWL--GDFILSKSVD---NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG-- 313 (369)
Q Consensus 241 ~~v~~~~~~--~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg-- 313 (369)
..+.++.|+ |++|++++.+ ..|++||+.+++ ...+..+. .+..++|+|+++ +|++++.++
T Consensus 311 ~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~----------~~~l~~~~-~~~~~~~spdg~--~l~~~s~~~~~ 377 (415)
T 2hqs_A 311 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG----------VQVLSSTF-LDETPSLAPNGT--MVIYSSSQGMG 377 (415)
T ss_dssp SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC----------EEECCCSS-SCEEEEECTTSS--EEEEEEEETTE
T ss_pred CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC----------EEEecCCC-CcCCeEEcCCCC--EEEEEEcCCCc
Confidence 678888887 7788887764 589999998765 22333333 788999999997 677776665
Q ss_pred -eEEEEEccCCCceeEEEeecCCCccceEEEEecCCCC
Q 017553 314 -KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGS 350 (369)
Q Consensus 314 -~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 350 (369)
.|++||+..+ ....+. .|.+.|.+++|+|...
T Consensus 378 ~~l~~~d~~g~---~~~~l~--~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 378 SVLNLVSTDGR---FKARLP--ATDGQVKFPAWSPYLH 410 (415)
T ss_dssp EEEEEEETTSC---CEEECC--CSSSEEEEEEECCCCC
T ss_pred cEEEEEECCCC---cEEEee--CCCCCCcCCccccccc
Confidence 7999998865 344555 7778999999999754
No 132
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.96 E-value=9.2e-26 Score=189.12 Aligned_cols=281 Identities=12% Similarity=0.114 Sum_probs=182.3
Q ss_pred cEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecC-CeEEEEEcC--Ccc--ccce
Q 017553 50 NVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN-GIIRVIDVS--NEK--LHKS 123 (369)
Q Consensus 50 ~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~d-g~i~vwd~~--~~~--~~~~ 123 (369)
.++++++.++ |.+|++........+... .+...+..++|+ |+|+ +|++++.+ +.|++|++. +++ .+..
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~s--pdg~-~l~~~~~~~~~v~~~~~~~~~~~~~~~~~ 79 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHEGALTLTQVV---DVPGQVQPMVVS--PDKR-YLYVGVRPEFRVLAYRIAPDDGALTFAAE 79 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEE---ECSSCCCCEEEC--TTSS-EEEEEETTTTEEEEEEECTTTCCEEEEEE
T ss_pred EEEEeCCCCCeEEEEEECCCCcEEEeeeE---ecCCCCceEEEC--CCCC-EEEEeecCCCeEEEEEecCCCCceeeccc
Confidence 4455546566 999998643333333322 245567778887 9998 77777765 999999997 444 3344
Q ss_pred eeccccceEEEEecCCCCceEEEEe-CCCcEEEEEcc---CCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEe-eCCc
Q 017553 124 FVGHGDSINEIRTQPLKPSLVVSAS-KDESVRLWNVQ---TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG-MDNT 198 (369)
Q Consensus 124 ~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~vwd~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~ 198 (369)
+..+. .+..++|+| +++.|++++ .++.|.+||+. ..+.+..+. ....+.+++|+| +++.+++++ .++.
T Consensus 80 ~~~~~-~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~~s~-dg~~l~~~~~~~~~ 152 (343)
T 1ri6_A 80 SALPG-SLTHISTDH-QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE----GLDGCHSANISP-DNRTLWVPALKQDR 152 (343)
T ss_dssp EECSS-CCSEEEECT-TSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC----CCTTBCCCEECT-TSSEEEEEEGGGTE
T ss_pred cccCC-CCcEEEEcC-CCCEEEEEecCCCeEEEEECCCCcccccccccc----CCCCceEEEECC-CCCEEEEecCCCCE
Confidence 54433 789999999 777666555 58899999994 334444443 344688999999 776666666 8999
Q ss_pred EEEEEccC-ceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEe-ecCCeEEEecCCCCCCCC
Q 017553 199 VKIWSMKE-FWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSK-SVDNEIVLWEPKMKEQSP 274 (369)
Q Consensus 199 v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~-~~d~~i~i~d~~~~~~~~ 274 (369)
|++||+.. +...... ...........+..+.|+ +++++++ ..++.|.+|++.......
T Consensus 153 v~~~d~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~ 214 (343)
T 1ri6_A 153 ICLFTVSDDGHLVAQD------------------PAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNI 214 (343)
T ss_dssp EEEEEECTTSCEEEEE------------------EEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCC
T ss_pred EEEEEecCCCceeeec------------------ccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcE
Confidence 99999986 3211100 000111123456678886 6656544 478999999996422100
Q ss_pred CCCccceeeeccCC---CCCeeEEEEeecCCccEEEEecCCCeEEEEEcc--CCCceeEEEeecCCCccceEEEEecCCC
Q 017553 275 GEGTADILQKYPVP---ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ--SSPPVLIARLSHAQSKSPIRQTAMSYDG 349 (369)
Q Consensus 275 ~~~~~~~~~~~~~~---~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 349 (369)
.....+..+... ...+..++|+|+++ .++++...++.|.+||+. ++....+..+. .+ ..+..++|+|+|
T Consensus 215 --~~~~~~~~~~~~~~~~~~~~~i~~s~dg~-~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~--~~-~~~~~~~~s~dg 288 (343)
T 1ri6_A 215 --ECVQTLDMMPENFSDTRWAADIHITPDGR-HLYACDRTASLITVFSVSEDGSVLSKEGFQP--TE-TQPRGFNVDHSG 288 (343)
T ss_dssp --EEEEEEECSCTTCCSCCCEEEEEECTTSS-EEEEEETTTTEEEEEEECTTSCCEEEEEEEE--CS-SSCCCEEECTTS
T ss_pred --EEEeeccccCccccccCCccceEECCCCC-EEEEEecCCCEEEEEEEcCCCCceEEeeeec--CC-CccceEEECCCC
Confidence 001111111111 23456799999997 244466689999999998 44434454554 23 238899999999
Q ss_pred CEEEEee-cCCeEEEEecC
Q 017553 350 STILSCC-EDGAIWRWDAI 367 (369)
Q Consensus 350 ~~l~s~~-~dg~i~vw~~~ 367 (369)
++|++++ .++.|.+|++.
T Consensus 289 ~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 289 KYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp SEEEEECTTTCEEEEEEEE
T ss_pred CEEEEecCCCCeEEEEEEc
Confidence 9888887 68999999664
No 133
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.96 E-value=4.5e-25 Score=185.75 Aligned_cols=274 Identities=12% Similarity=0.108 Sum_probs=199.5
Q ss_pred CCcCeEEEEEeeccCCCccEEEEecC-------Cc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEE
Q 017553 32 GKRPLYAVVFNFIDSRYFNVFATVGG-------NR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVA 103 (369)
Q Consensus 32 h~~~v~~~~~s~~~~~~~~~la~~~~-------~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~ 103 (369)
....+..++|+| +++.+++++. ++ |.+||..+++....+.. ......++|+ |+|+.++++
T Consensus 39 ~~~~~~~~~~s~----dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~------~~~~~~~~~s--~dg~~l~v~ 106 (353)
T 3vgz_A 39 VGKGAYEMAYSQ----QENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN------DLKPFGATIN--NTTQTLWFG 106 (353)
T ss_dssp EESSEEEEEEET----TTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE------SSCCCSEEEE--TTTTEEEEE
T ss_pred hccCccceEECC----CCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec------CCCcceEEEC--CCCCEEEEE
Confidence 345688999999 5777777663 33 99999999888777763 2235567777 999845556
Q ss_pred eecCCeEEEEEcCCccccceeecccc---------ceEEEEecCCCCceEEEEe--CCCcEEEEEccCCcEEEEeeccCC
Q 017553 104 GGINGIIRVIDVSNEKLHKSFVGHGD---------SINEIRTQPLKPSLVVSAS--KDESVRLWNVQTGICILIFAGAGG 172 (369)
Q Consensus 104 ~~~dg~i~vwd~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~ 172 (369)
...++.|.+||..+++.+..+..+.. .+.+++|+| +++.+++++ .++.|.+||+.+++.+..+. .
T Consensus 107 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~---~ 182 (353)
T 3vgz_A 107 NTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGGNIKLKTAIQ---N 182 (353)
T ss_dssp ETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETTTTEEEEEEC---C
T ss_pred ecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCCCCceEEEec---C
Confidence 66689999999999988877775432 278899999 667666555 47899999999999888776 3
Q ss_pred CCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--C
Q 017553 173 HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--G 250 (369)
Q Consensus 173 ~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~ 250 (369)
+...+.+++|+| +++.+++++.++.|.+||+.+++....... ....+...+..++|+ +
T Consensus 183 ~~~~~~~~~~s~-dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~s~dg 242 (353)
T 3vgz_A 183 TGKMSTGLALDS-EGKRLYTTNADGELITIDTADNKILSRKKL-------------------LDDGKEHFFINISLDTAR 242 (353)
T ss_dssp CCTTCCCCEEET-TTTEEEEECTTSEEEEEETTTTEEEEEEEC-------------------CCSSSCCCEEEEEEETTT
T ss_pred CCCccceEEECC-CCCEEEEEcCCCeEEEEECCCCeEEEEEEc-------------------CCCCCCcccceEEECCCC
Confidence 555688899999 888888888899999999988542211110 011244566778887 6
Q ss_pred cEEEEeec-CCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEE
Q 017553 251 DFILSKSV-DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA 329 (369)
Q Consensus 251 ~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 329 (369)
+++++++. ++.|.+||+.+++ .+..+.... ...++|+|+++ .++++...++.|.+||..+++ .+.
T Consensus 243 ~~l~~~~~~~~~v~~~d~~~~~---------~~~~~~~~~--~~~~~~s~dg~-~l~v~~~~~~~v~~~d~~~~~--~~~ 308 (353)
T 3vgz_A 243 QRAFITDSKAAEVLVVDTRNGN---------ILAKVAAPE--SLAVLFNPARN-EAYVTHRQAGKVSVIDAKSYK--VVK 308 (353)
T ss_dssp TEEEEEESSSSEEEEEETTTCC---------EEEEEECSS--CCCEEEETTTT-EEEEEETTTTEEEEEETTTTE--EEE
T ss_pred CEEEEEeCCCCEEEEEECCCCc---------EEEEEEcCC--CceEEECCCCC-EEEEEECCCCeEEEEECCCCe--EEE
Confidence 66665554 5899999998776 344444332 25689999997 245556678999999999884 444
Q ss_pred EeecCCCccceEEEEecCCCCEEEEeecC
Q 017553 330 RLSHAQSKSPIRQTAMSYDGSTILSCCED 358 (369)
Q Consensus 330 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 358 (369)
.+... ..+.+++|+|||++|+++..+
T Consensus 309 ~~~~~---~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 309 TFDTP---THPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp EEECC---SEEEEEEECTTSCEEEEEEEC
T ss_pred EEecC---CCCCeEEEcCCCCEEEEEEcc
Confidence 45422 468899999999977777655
No 134
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.95 E-value=1.5e-25 Score=187.28 Aligned_cols=266 Identities=11% Similarity=0.014 Sum_probs=185.1
Q ss_pred cEEEEecCCc-EEEEEecCCceeEEEeeeccCCccc-ceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeec-
Q 017553 50 NVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEE-SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG- 126 (369)
Q Consensus 50 ~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~- 126 (369)
++|++++.++ |.+||..+++.+..+.. .+.. .+..++|+ |+|+.+++++..++.|.+||+.+++.+..+..
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~----~~~~~~~~~~~~s--~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~ 75 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITI----ADAGPTPMVPMVA--PGGRIAYATVNKSESLVKIDLVTGETLGRIDLS 75 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEEC----TTCTTCCCCEEEC--TTSSEEEEEETTTTEEEEEETTTCCEEEEEECC
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEc----CCCCCCccceEEc--CCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcC
Confidence 4677877777 99999988887776652 1111 35667777 99974556777789999999999887776653
Q ss_pred c----ccceEEEEecCCCCceEEEEe------------CCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEE
Q 017553 127 H----GDSINEIRTQPLKPSLVVSAS------------KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRI 190 (369)
Q Consensus 127 ~----~~~v~~~~~~~~~~~~l~s~~------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 190 (369)
+ ...+..++|+| +++.+++++ .++.|.+||+.+++.+..+. ....+.+++|+| +++++
T Consensus 76 ~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~----~~~~~~~~~~s~-dg~~l 149 (337)
T 1pby_B 76 TPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE----APRQITMLAWAR-DGSKL 149 (337)
T ss_dssp BTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE----CCSSCCCEEECT-TSSCE
T ss_pred CcccccccccceEECC-CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEe----CCCCcceeEECC-CCCEE
Confidence 1 23678899999 887888775 57999999999998887776 345678899999 77777
Q ss_pred EEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeeeCcEEEEee-------------
Q 017553 191 ASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKS------------- 257 (369)
Q Consensus 191 ~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~------------- 257 (369)
+++ ++.|.+||+.+++........ . +...+ .+..++..++..+
T Consensus 150 ~~~--~~~i~~~d~~~~~~~~~~~~~--~-------------------~~~~~-~~s~dg~~l~~~~~~~~~~~~~~~~~ 205 (337)
T 1pby_B 150 YGL--GRDLHVMDPEAGTLVEDKPIQ--S-------------------WEAET-YAQPDVLAVWNQHESSGVMATPFYTA 205 (337)
T ss_dssp EEE--SSSEEEEETTTTEEEEEECST--T-------------------TTTTT-BCCCBCCCCCCCCTTTTEEEEEEEEE
T ss_pred EEe--CCeEEEEECCCCcEeeeeecc--c-------------------cCCCc-eeCCCccEEeeeccCCCceeeeeecc
Confidence 776 689999999885432211100 0 00000 1111122222211
Q ss_pred -cCC----------eEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCce
Q 017553 258 -VDN----------EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPV 326 (369)
Q Consensus 258 -~d~----------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 326 (369)
.++ .|.+||+.+++. ....+..+...+..++|+|+++ +++++ ++.|.+||+.+++
T Consensus 206 ~~~~~~~~~~~~~~~v~~~d~~~~~~--------~~~~~~~~~~~~~~~~~s~dg~--~l~~~--~~~v~~~d~~~~~-- 271 (337)
T 1pby_B 206 RKDIDPADPTAYRTGLLTMDLETGEM--------AMREVRIMDVFYFSTAVNPAKT--RAFGA--YNVLESFDLEKNA-- 271 (337)
T ss_dssp BTTSCTTSGGGEEEEEEEEETTTCCE--------EEEEEEECSSCEEEEEECTTSS--EEEEE--ESEEEEEETTTTE--
T ss_pred ccccccccccccccceEEEeCCCCCc--------eEeecCCCCCceeeEEECCCCC--EEEEe--CCeEEEEECCCCc--
Confidence 111 578999987752 1222333445677899999997 66666 7999999999873
Q ss_pred eEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 327 LIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 327 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
.+..+... ..+.+++|+|+|++|++++.++.|++||+.+
T Consensus 272 ~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~ 310 (337)
T 1pby_B 272 SIKRVPLP---HSYYSVNVSTDGSTVWLGGALGDLAAYDAET 310 (337)
T ss_dssp EEEEEECS---SCCCEEEECTTSCEEEEESBSSEEEEEETTT
T ss_pred CcceecCC---CceeeEEECCCCCEEEEEcCCCcEEEEECcC
Confidence 44444422 4578999999999999999999999999864
No 135
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.95 E-value=8e-26 Score=185.37 Aligned_cols=253 Identities=13% Similarity=0.141 Sum_probs=185.2
Q ss_pred cCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCC-ccccceeecc-ccceE
Q 017553 56 GGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN-EKLHKSFVGH-GDSIN 132 (369)
Q Consensus 56 ~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~-~~~v~ 132 (369)
+.++ |++||+.+++...... +...+.+++|+ |+|+ +|++++ ++.|++||+.+ ++.......+ ...+.
T Consensus 19 ~~~~~i~~~d~~~~~~~~~~~------~~~~v~~~~~s--pdg~-~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 88 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRKMRVVWQ------TPELFEAPNWS--PDGK-YLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNN 88 (297)
T ss_dssp CCCEEEEEEETTTTEEEEEEE------ESSCCEEEEEC--TTSS-EEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCS
T ss_pred CcceeEEEEeCCCCceeeecc------CCcceEeeEEC--CCCC-EEEEEc-CCeEEEEeCCCCCCceEecccccccccc
Confidence 4555 9999988877654332 56788889988 9999 888876 78999999998 7776666555 36889
Q ss_pred EEEecCCCCceEEEEe--CCCcEEEEEc--cCCcEEEEeeccCCCCCcEEEEEecCCCceEEE-EEeeCCcEEEEEccCc
Q 017553 133 EIRTQPLKPSLVVSAS--KDESVRLWNV--QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIA-SCGMDNTVKIWSMKEF 207 (369)
Q Consensus 133 ~~~~~~~~~~~l~s~~--~dg~i~vwd~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~d~~v~i~d~~~~ 207 (369)
+++|+| +++.|++++ .++...||.+ .+++ ...+. +...+..++|+| +++.|+ +++.++.+++|+++..
T Consensus 89 ~~~~sp-dg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~----~~~~~~~~~~sp-dg~~l~~~~~~~~~~~l~~~~~~ 161 (297)
T 2ojh_A 89 DHGISP-DGALYAISDKVEFGKSAIYLLPSTGGT-PRLMT----KNLPSYWHGWSP-DGKSFTYCGIRDQVFDIYSMDID 161 (297)
T ss_dssp CCEECT-TSSEEEEEECTTTSSCEEEEEETTCCC-CEECC----SSSSEEEEEECT-TSSEEEEEEEETTEEEEEEEETT
T ss_pred ceEECC-CCCEEEEEEeCCCCcceEEEEECCCCc-eEEee----cCCCccceEECC-CCCEEEEEECCCCceEEEEEECC
Confidence 999999 888899888 3345555554 4444 33443 334589999999 666555 7888999999997541
Q ss_pred eeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEee-cCCeEEEecCCCCCCCCCCCccceeee
Q 017553 208 WTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS-VDNEIVLWEPKMKEQSPGEGTADILQK 284 (369)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~ 284 (369)
. .....+..+...+.++.|+ +++++.++ .++.+++|++..... .+..
T Consensus 162 ~----------------------~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~--------~~~~ 211 (297)
T 2ojh_A 162 S----------------------GVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGS--------SVER 211 (297)
T ss_dssp T----------------------CCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS--------CEEE
T ss_pred C----------------------CcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCC--------CcEE
Confidence 1 1233445667788899997 66676655 589999998863221 3455
Q ss_pred ccCCCCCeeEEEEeecCCccEEEEecCC-----------CeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEE
Q 017553 285 YPVPECDIWFIKFSCDFHYNAAAIGNRE-----------GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTIL 353 (369)
Q Consensus 285 ~~~~~~~i~~~~~s~~~~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 353 (369)
+..+...+..++|+|+++ +|++++.+ +.|++||+.+++...+..+. +|...+..++|+|++++|+
T Consensus 212 ~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~~spdg~~l~ 287 (297)
T 2ojh_A 212 ITDSAYGDWFPHPSPSGD--KVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLF--GGQGTMNSPNWSPDGDEFA 287 (297)
T ss_dssp CCCCSEEEEEEEECTTSS--EEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEE--ESTTTSCSCCBCTTSSEEE
T ss_pred EecCCcccCCeEECCCCC--EEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccC--CCCcccccceECCCCCEEE
Confidence 555667788999999997 66666544 57999999988766566554 5567899999999999999
Q ss_pred EeecCC
Q 017553 354 SCCEDG 359 (369)
Q Consensus 354 s~~~dg 359 (369)
+++.+.
T Consensus 288 ~~~~~~ 293 (297)
T 2ojh_A 288 YVRYFP 293 (297)
T ss_dssp EEEECC
T ss_pred EEEecc
Confidence 888664
No 136
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.95 E-value=2.5e-25 Score=205.56 Aligned_cols=285 Identities=13% Similarity=0.053 Sum_probs=200.3
Q ss_pred CcCeEEEEEeeccCCCccEEEEecC-C------cEEEEEecCCceeEEEeeeccCC-------------------cccce
Q 017553 33 KRPLYAVVFNFIDSRYFNVFATVGG-N------RVTVYQCLEGGVIAALQSYVDED-------------------KEESF 86 (369)
Q Consensus 33 ~~~v~~~~~s~~~~~~~~~la~~~~-~------~v~iw~~~~~~~~~~~~~~~~~~-------------------~~~~v 86 (369)
...|.+++||| +|++|++++. + .|.+||+.+++....+....... ....+
T Consensus 36 ~~~~~~~~~Sp----dG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 111 (741)
T 2ecf_A 36 GPTLMKPKVAP----DGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGI 111 (741)
T ss_dssp CCCCEEEEECT----TSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEES
T ss_pred CCCCCCceEec----CCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCc
Confidence 55799999999 6899998876 4 39999998887665554321100 00236
Q ss_pred eEEEeeecCCCccEEEEeecCCeEEEEEcCCcc--ccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEE
Q 017553 87 YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK--LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICI 164 (369)
Q Consensus 87 ~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 164 (369)
..++|+ |||+ +|++++. +.|++||+.++. ....+..|...+..++|+| +++.|+.++. +.|++||+.+++..
T Consensus 112 ~~~~~S--pDg~-~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SP-DG~~la~~~~-~~i~~~d~~~g~~~ 185 (741)
T 2ecf_A 112 VDYQWS--PDAQ-RLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSP-KGGFVSFIRG-RNLWVIDLASGRQM 185 (741)
T ss_dssp CCCEEC--TTSS-EEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECT-TSSEEEEEET-TEEEEEETTTTEEE
T ss_pred ceeEEC--CCCC-EEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCC-CCCEEEEEeC-CcEEEEecCCCCEE
Confidence 677777 9999 8887775 899999998873 4556777888999999999 8898888874 69999999988766
Q ss_pred EEeeccCCCCCc----------------EEEEEecCCCceEEEEEeeCC-------------------------------
Q 017553 165 LIFAGAGGHRNE----------------VLSVDFHPSDIYRIASCGMDN------------------------------- 197 (369)
Q Consensus 165 ~~~~~~~~~~~~----------------v~~~~~~~~~~~~l~~~~~d~------------------------------- 197 (369)
.... .+... +..++|+| +++.|++++.|+
T Consensus 186 ~~~~---~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~ 261 (741)
T 2ecf_A 186 QLTA---DGSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANV 261 (741)
T ss_dssp ECCC---CCCSSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred Eecc---CCccceeccccceeeeeccccccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence 5443 23322 47799999 888888887765
Q ss_pred --cEEEEEccC-ceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeee-eCcEEEEeec-----CCeEEEecCC
Q 017553 198 --TVKIWSMKE-FWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW-LGDFILSKSV-----DNEIVLWEPK 268 (369)
Q Consensus 198 --~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~-----d~~i~i~d~~ 268 (369)
.|.+||+.+ ++... +.....|...+..++| +|++|++++. +..|++||+.
T Consensus 262 ~~~l~~~d~~~~~~~~~---------------------~~~~~~~~~~~~~~~~pDg~~l~~~~~~~~~~~~~i~~~d~~ 320 (741)
T 2ecf_A 262 QVKLGVISPAEQAQTQW---------------------IDLGKEQDIYLARVNWRDPQHLSFQRQSRDQKKLDLVEVTLA 320 (741)
T ss_dssp EEEEEEECSSTTCCCEE---------------------ECCCSCSSEEEEEEEEEETTEEEEEEEETTSSEEEEEEEETT
T ss_pred eeEEEEEECCCCCceEE---------------------ecCCCCcceEEEEEEeCCCCEEEEEEecccCCeEEEEEEECC
Confidence 677777665 32110 0001135666777776 3667776654 5679999998
Q ss_pred CCCCCCCCCccceeeeccCCCC----CeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEE-
Q 017553 269 MKEQSPGEGTADILQKYPVPEC----DIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQT- 343 (369)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~----~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~- 343 (369)
+++ ....+..+.. .+..++|+|+++ ++++++.+|.++||.+.... . ...+. .+...|..+
T Consensus 321 ~g~---------~~~~~~~~~~~~~~~~~~~~~spdg~--~~~~~~~~g~~~l~~~~~~~-~-~~~l~--~~~~~v~~~~ 385 (741)
T 2ecf_A 321 SNQ---------QRVLAHETSPTWVPLHNSLRFLDDGS--ILWSSERTGFQHLYRIDSKG-K-AAALT--HGNWSVDELL 385 (741)
T ss_dssp TCC---------EEEEEEEECSSCCCCCSCCEECTTSC--EEEEECTTSSCEEEEECSSS-C-EEESC--CSSSCEEEEE
T ss_pred CCc---------eEEEEEcCCCCcCCcCCceEECCCCe--EEEEecCCCccEEEEEcCCC-C-eeeee--ecceEEEeEe
Confidence 875 2222222221 346789999997 88888899988888776332 2 44554 556778887
Q ss_pred EecCCCCEEE-EeecCC--eEEEEecC
Q 017553 344 AMSYDGSTIL-SCCEDG--AIWRWDAI 367 (369)
Q Consensus 344 ~~s~~~~~l~-s~~~dg--~i~vw~~~ 367 (369)
.|+|+|+.|+ +++.++ .++||++.
T Consensus 386 ~~s~dg~~l~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 386 AVDEKAGLAYFRAGIESARESQIYAVP 412 (741)
T ss_dssp EEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred EEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence 5999998775 445555 89999875
No 137
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.94 E-value=1.4e-24 Score=186.75 Aligned_cols=307 Identities=15% Similarity=0.131 Sum_probs=191.3
Q ss_pred CCcCeEEEEEeeccCCCccEEEEecCCcEEEEEecCCc----------eeEEEeeeccCCcccceeEEEeeecCCCccEE
Q 017553 32 GKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGG----------VIAALQSYVDEDKEESFYTVSWACNVDGIPFL 101 (369)
Q Consensus 32 h~~~v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~----------~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l 101 (369)
....++.+++++ .+.++++++.++++||+..... ............+...|.+++|+ |+|+ +|
T Consensus 35 ~~~~~n~lavs~----~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s--pdg~-~l 107 (434)
T 2oit_A 35 PKERSSLLAVSN----KYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALS--CDNL-TL 107 (434)
T ss_dssp CCSCCBCEEEET----TTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEEC--TTSC-EE
T ss_pred CCCCccEEEEec----CCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEc--CCCC-EE
Confidence 344689999999 5788999988889998864211 11111100011245679999998 9998 77
Q ss_pred E----EeecCCeEEEEEcCCc--------cc---cceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEE
Q 017553 102 V----AGGINGIIRVIDVSNE--------KL---HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILI 166 (369)
Q Consensus 102 ~----~~~~dg~i~vwd~~~~--------~~---~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 166 (369)
+ +|+.|+.|++||+.++ +. +..+.+|...|.+++|+|.++.+|++++.||+|++||++++..+..
T Consensus 108 av~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~ 187 (434)
T 2oit_A 108 SACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCA 187 (434)
T ss_dssp EEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEE
T ss_pred EEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceee
Confidence 7 7889999999999765 22 3455679999999999995588999999999999999999876655
Q ss_pred eeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeee
Q 017553 167 FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCN 246 (369)
Q Consensus 167 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 246 (369)
.. +|...|.+++|+| ++.+|++|+.||+|++||++. ....... .+......|...+.++
T Consensus 188 ~~---~~~~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~~-~~~~~~~----------------~~~~~~~~~~~~v~~v 246 (434)
T 2oit_A 188 TL---PSTVAVTSVCWSP-KGKQLAVGKQNGTVVQYLPTL-QEKKVIP----------------CPPFYESDHPVRVLDV 246 (434)
T ss_dssp EE---CGGGCEEEEEECT-TSSCEEEEETTSCEEEECTTC-CEEEEEC----------------CCTTCCTTSCEEEEEE
T ss_pred cc---CCCCceeEEEEcC-CCCEEEEEcCCCcEEEEccCC-ccccccc----------------CCcccCCCCceeEEEE
Confidence 55 6899999999999 899999999999999999983 1110000 0000011344588999
Q ss_pred eeeCc--EEEE-eecCC------eEEEecCCCCCCCCCC---CccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCe
Q 017553 247 RWLGD--FILS-KSVDN------EIVLWEPKMKEQSPGE---GTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGK 314 (369)
Q Consensus 247 ~~~~~--~l~~-~~~d~------~i~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~ 314 (369)
.|+++ ++++ ...+| .+++|+++..+..... ........+.....+...+..-++.+ .++++.+..+.
T Consensus 247 ~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~-l~~v~s~~s~d 325 (434)
T 2oit_A 247 LWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWD-LVLAASAASTE 325 (434)
T ss_dssp EEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGT-EEEEEETTCSB
T ss_pred EEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCC-EEEEecCCCCc
Confidence 99833 3332 33343 3899999865421110 00000000111122222333336665 35555566666
Q ss_pred EEEEEccCCCc-eeEEEee----------cCCCccceEEEEec---------------CCCCEEEEeecCCeEEEEecC
Q 017553 315 IFVWELQSSPP-VLIARLS----------HAQSKSPIRQTAMS---------------YDGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 315 i~i~d~~~~~~-~~~~~~~----------~~~~~~~v~~~~~s---------------~~~~~l~s~~~dg~i~vw~~~ 367 (369)
|.++....... .....+. .......+..+++. |-...|.+-+.||.+..|.+-
T Consensus 326 v~vl~~~~~~~~~~~~~~~d~~ra~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~ 404 (434)
T 2oit_A 326 VSILARQSDQINWESWLLEDSSRAELPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMI 404 (434)
T ss_dssp CEEEEECTTSSCEEEEEECGGGCCBCCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEE
T ss_pred eeEEEecCCCCccEEEeccccccccccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEE
Confidence 77766443211 1111111 11122233344432 122578888899999999863
No 138
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.94 E-value=1.5e-24 Score=199.21 Aligned_cols=280 Identities=11% Similarity=0.098 Sum_probs=195.2
Q ss_pred cCeEEEEEeeccCCCccEEEEecCCcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEE
Q 017553 34 RPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVI 113 (369)
Q Consensus 34 ~~v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vw 113 (369)
..|.+++||| + ..++.+.++.+++||+.+++...... +...+..++|+ |||+ .|+.+ .++.|++|
T Consensus 82 ~~v~~~~~sp----d-~~~~~~~~~~i~~~d~~~~~~~~l~~------~~~~~~~~~~S--pdG~-~la~~-~~~~i~v~ 146 (706)
T 2z3z_A 82 FPSFRTLDAG----R-GLVVLFTQGGLVGFDMLARKVTYLFD------TNEETASLDFS--PVGD-RVAYV-RNHNLYIA 146 (706)
T ss_dssp CCCEEEEETT----T-TEEEEEETTEEEEEETTTTEEEEEEC------CTTCCTTCEEC--TTSS-EEEEE-ETTEEEEE
T ss_pred cCceeEEECC----C-CeEEEEECCEEEEEECCCCceEEccC------CcccccCCcCC--CCCC-EEEEE-ECCeEEEE
Confidence 5699999999 5 55555555569999988776543322 34557778887 9999 77774 68999999
Q ss_pred EcCC-----ccccceeeccccc--------------eEEEEecCCCCceEEEEe--------------------------
Q 017553 114 DVSN-----EKLHKSFVGHGDS--------------INEIRTQPLKPSLVVSAS-------------------------- 148 (369)
Q Consensus 114 d~~~-----~~~~~~~~~~~~~--------------v~~~~~~~~~~~~l~s~~-------------------------- 148 (369)
|+.+ ++.......+... +.++.|+| +++.|++++
T Consensus 147 ~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y 225 (706)
T 2z3z_A 147 RGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYY 225 (706)
T ss_dssp ECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECC
T ss_pred ecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeC
Confidence 9988 7665544433332 48999999 889898887
Q ss_pred -------CCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCC-----cEEEEEccCceeeeeeeee
Q 017553 149 -------KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN-----TVKIWSMKEFWTYVEKSFT 216 (369)
Q Consensus 149 -------~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-----~v~i~d~~~~~~~~~~~~~ 216 (369)
.+..|++||+.+++...... ...|...+.+++|+| +++.|++++.++ .|++||+.++.....
T Consensus 226 ~~~g~~~~~~~l~~~d~~~~~~~~~~~-~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~---- 299 (706)
T 2z3z_A 226 PMAGTPSHHVTVGIYHLATGKTVYLQT-GEPKEKFLTNLSWSP-DENILYVAEVNRAQNECKVNAYDAETGRFVRT---- 299 (706)
T ss_dssp CBTTSCCCEEEEEEEETTTTEEEECCC-CSCTTCEEEEEEECT-TSSEEEEEEECTTSCEEEEEEEETTTCCEEEE----
T ss_pred CCCCCCCCeeEEEEEECCCCceEeecc-CCCCceeEeeEEEEC-CCCEEEEEEeCCCCCeeEEEEEECCCCceeeE----
Confidence 44689999999887654332 124677899999999 888888887776 899999988521100
Q ss_pred ccCCCCCCCCceeecceeeeccCC---Cceeeeee----eCcEEEEeecCCeEEEecCC-CCCCCCCCCccceeeeccCC
Q 017553 217 WTDLPSKFPTKYVQFPVFIASVHS---NYVDCNRW----LGDFILSKSVDNEIVLWEPK-MKEQSPGEGTADILQKYPVP 288 (369)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~----~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~ 288 (369)
+.. ..+. ..+..+.| ++++++++..|+.+++|++. ++. .+..+..+
T Consensus 300 ----------------~~~-~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~---------~~~~l~~~ 353 (706)
T 2z3z_A 300 ----------------LFV-ETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGR---------LIRQVTKG 353 (706)
T ss_dssp ----------------EEE-EECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSC---------EEEECCCS
T ss_pred ----------------EEE-ccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCC---------EEEecCCC
Confidence 000 0111 12344555 45688888899999999876 222 44555556
Q ss_pred CCCeeE-EEEeecCCccEEEEecCCC----eEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecC----C
Q 017553 289 ECDIWF-IKFSCDFHYNAAAIGNREG----KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCED----G 359 (369)
Q Consensus 289 ~~~i~~-~~~s~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----g 359 (369)
...+.. ++|+|+++ .+++++..++ .|..||+.+++. ..+. +...+.+++|+|||++|+.++.+ +
T Consensus 354 ~~~v~~~~~~spdg~-~l~~~~~~~~~~~~~l~~~d~~~~~~---~~l~---~~~~~~~~~~spdg~~l~~~~~~~~~p~ 426 (706)
T 2z3z_A 354 EWEVTNFAGFDPKGT-RLYFESTEASPLERHFYCIDIKGGKT---KDLT---PESGMHRTQLSPDGSAIIDIFQSPTVPR 426 (706)
T ss_dssp SSCEEEEEEECTTSS-EEEEEESSSCTTCBEEEEEETTCCCC---EESC---CSSSEEEEEECTTSSEEEEEEECSSCSC
T ss_pred CeEEEeeeEEcCCCC-EEEEEecCCCCceEEEEEEEcCCCCc---eecc---CCCceEEEEECCCCCEEEEEecCCCCCc
Confidence 666766 79999997 2444555555 677777777642 2332 34678999999999988877544 4
Q ss_pred eEEEEecCC
Q 017553 360 AIWRWDAIP 368 (369)
Q Consensus 360 ~i~vw~~~~ 368 (369)
.|++||+.+
T Consensus 427 ~i~l~d~~~ 435 (706)
T 2z3z_A 427 KVTVTNIGK 435 (706)
T ss_dssp EEEEEESSS
T ss_pred EEEEEECCC
Confidence 699999864
No 139
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.94 E-value=4.4e-25 Score=203.38 Aligned_cols=284 Identities=10% Similarity=-0.004 Sum_probs=187.4
Q ss_pred cCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecC-----
Q 017553 34 RPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN----- 107 (369)
Q Consensus 34 ~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~d----- 107 (369)
..+.+++|+| +|+++++ +.++ |++||+.+++....+..+. .....|..++|+ |||+ +|++++.+
T Consensus 17 ~~~~~~~~sp----dg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~--~~~~~v~~~~~S--pDg~-~l~~~~~~~~~~~ 86 (723)
T 1xfd_A 17 IHDPEAKWIS----DTEFIYR-EQKGTVRLWNVETNTSTVLIEGKK--IESLRAIRYEIS--PDRE-YALFSYNVEPIYQ 86 (723)
T ss_dssp CCCCCCCBSS----SSCBCCC-CSSSCEEEBCGGGCCCEEEECTTT--TTTTTCSEEEEC--TTSS-EEEEEESCCCCSS
T ss_pred ccccccEEcC----CCcEEEE-eCCCCEEEEECCCCcEEEEecccc--ccccccceEEEC--CCCC-EEEEEecCcccee
Confidence 3478899999 6887777 4555 9999999988766654211 011247788887 9999 88888664
Q ss_pred ----CeEEEEEcCCccc--cceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCc-----
Q 017553 108 ----GIIRVIDVSNEKL--HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNE----- 176 (369)
Q Consensus 108 ----g~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~----- 176 (369)
+.|++||+.+++. +....+|...+..++|+| +++.|+.++. +.|++||+.+++...... .+...
T Consensus 87 ~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SP-dG~~la~~~~-~~i~~~~~~~g~~~~~~~---~~~~~~~~~g 161 (723)
T 1xfd_A 87 HSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGP-KGQQLIFIFE-NNIYYCAHVGKQAIRVVS---TGKEGVIYNG 161 (723)
T ss_dssp SCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCS-STTCEEEEET-TEEEEESSSSSCCEEEEC---CCBTTTEEEE
T ss_pred ecceeeEEEEECCCCceEeccCCccccccccccEECC-CCCEEEEEEC-CeEEEEECCCCceEEEec---CCCCCceECc
Confidence 7899999998875 222234555689999999 8888998886 799999999888766554 23332
Q ss_pred -------------EEEEEecCCCceEEEEEeeCC----------------------------------cEEEEEccCcee
Q 017553 177 -------------VLSVDFHPSDIYRIASCGMDN----------------------------------TVKIWSMKEFWT 209 (369)
Q Consensus 177 -------------v~~~~~~~~~~~~l~~~~~d~----------------------------------~v~i~d~~~~~~ 209 (369)
+.+++|+| +++.|++++.|+ .|++||+.++.
T Consensus 162 ~~~~v~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~- 239 (723)
T 1xfd_A 162 LSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPT- 239 (723)
T ss_dssp ECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSC-
T ss_pred ccceeEEEEeccCcceEEECC-CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCc-
Confidence 37899999 888888887653 45555555421
Q ss_pred eeeeeeeccCCCCCCCCceeecceeeec------cCCCceeeeeee--CcEEEEeec----CCeEEEecCCCCCCCCCCC
Q 017553 210 YVEKSFTWTDLPSKFPTKYVQFPVFIAS------VHSNYVDCNRWL--GDFILSKSV----DNEIVLWEPKMKEQSPGEG 277 (369)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~--~~~l~~~~~----d~~i~i~d~~~~~~~~~~~ 277 (369)
....+. .+...+..+.|+ |+++++... +..|++||+.+++.
T Consensus 240 ----------------------~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~----- 292 (723)
T 1xfd_A 240 ----------------------HDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVC----- 292 (723)
T ss_dssp ----------------------CCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCE-----
T ss_pred ----------------------eeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcc-----
Confidence 111122 235678888887 667766543 35799999987752
Q ss_pred ccceeeeccC-CCCCe----eEEEEeecCCccEEEEecCCC------eEEEEE-ccCCCceeEEEeecCCCccceEE-EE
Q 017553 278 TADILQKYPV-PECDI----WFIKFSCDFHYNAAAIGNREG------KIFVWE-LQSSPPVLIARLSHAQSKSPIRQ-TA 344 (369)
Q Consensus 278 ~~~~~~~~~~-~~~~i----~~~~~s~~~~~~~l~~~~~dg------~i~i~d-~~~~~~~~~~~~~~~~~~~~v~~-~~ 344 (369)
...... +...+ ..++|+|+++..+++++..++ .|.+|| ..++.......+. .+...+.. ++
T Consensus 293 ----~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~--~~~~~~~~~~~ 366 (723)
T 1xfd_A 293 ----TKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSIT--SGDWDVTKILA 366 (723)
T ss_dssp ----EEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSC--CSSSCEEEEEE
T ss_pred ----eEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEee--cCCeEEEeeeE
Confidence 222211 12222 368999999832222356677 566777 3444200022232 22234544 69
Q ss_pred ecCCCCEEEEeecC---CeEEEEecC
Q 017553 345 MSYDGSTILSCCED---GAIWRWDAI 367 (369)
Q Consensus 345 ~s~~~~~l~s~~~d---g~i~vw~~~ 367 (369)
|+|||++|+..+.+ +.++||++.
T Consensus 367 ~spdg~~l~~~~~~~~~~~~~l~~~~ 392 (723)
T 1xfd_A 367 YDEKGNKIYFLSTEDLPRRRQLYSAN 392 (723)
T ss_dssp EETTTTEEEEEESSSCTTCCEEEEEC
T ss_pred EcCCCCEEEEEEcCCCCcceEEEEEe
Confidence 99999999766555 789999875
No 140
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.94 E-value=3.4e-24 Score=197.97 Aligned_cols=279 Identities=12% Similarity=0.041 Sum_probs=195.9
Q ss_pred CeEEEEEeeccCCCccEEEEecCCcEEEEEecCCc--eeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEE
Q 017553 35 PLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGG--VIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRV 112 (369)
Q Consensus 35 ~v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~v 112 (369)
.|.+++||| +|++|++++.+.|.+||+.++. ....+. .+...+..++|+ |||+ .|+.++ ++.|++
T Consensus 110 ~v~~~~~Sp----Dg~~l~~~~~~~i~~~d~~~~~~~~~~~l~-----~~~~~~~~~~~S--PDG~-~la~~~-~~~i~~ 176 (741)
T 2ecf_A 110 GIVDYQWSP----DAQRLLFPLGGELYLYDLKQEGKAAVRQLT-----HGEGFATDAKLS--PKGG-FVSFIR-GRNLWV 176 (741)
T ss_dssp ESCCCEECT----TSSEEEEEETTEEEEEESSSCSTTSCCBCC-----CSSSCEEEEEEC--TTSS-EEEEEE-TTEEEE
T ss_pred CcceeEECC----CCCEEEEEeCCcEEEEECCCCCcceEEEcc-----cCCcccccccCC--CCCC-EEEEEe-CCcEEE
Confidence 489999999 6899999988669999988772 233333 355678888888 9999 888776 569999
Q ss_pred EEcCCccccceeeccccc----------------eEEEEecCCCCceEEEEeCCC-------------------------
Q 017553 113 IDVSNEKLHKSFVGHGDS----------------INEIRTQPLKPSLVVSASKDE------------------------- 151 (369)
Q Consensus 113 wd~~~~~~~~~~~~~~~~----------------v~~~~~~~~~~~~l~s~~~dg------------------------- 151 (369)
||+.+++.......+... +..++|+| +++.|++++.|+
T Consensus 177 ~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~ 255 (741)
T 2ecf_A 177 IDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPA 255 (741)
T ss_dssp EETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCB
T ss_pred EecCCCCEEEeccCCccceeccccceeeeeccccccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCC
Confidence 999887765544433332 47899999 888888887765
Q ss_pred --------cEEEEEccC-CcEEEEeeccCCCCCcEEEEEecCCCceEEEEEee-----CCcEEEEEccCceeeeeeeeec
Q 017553 152 --------SVRLWNVQT-GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM-----DNTVKIWSMKEFWTYVEKSFTW 217 (369)
Q Consensus 152 --------~i~vwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----d~~v~i~d~~~~~~~~~~~~~~ 217 (369)
.|++||+.+ ++...... ...|...+..++| | +++.|++++. +..|++||+.+++.
T Consensus 256 ~g~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~-p-Dg~~l~~~~~~~~~~~~~i~~~d~~~g~~-------- 324 (741)
T 2ecf_A 256 AGDANVQVKLGVISPAEQAQTQWIDL-GKEQDIYLARVNW-R-DPQHLSFQRQSRDQKKLDLVEVTLASNQQ-------- 324 (741)
T ss_dssp TTSCCCEEEEEEECSSTTCCCEEECC-CSCSSEEEEEEEE-E-ETTEEEEEEEETTSSEEEEEEEETTTCCE--------
T ss_pred CCCCCCeeEEEEEECCCCCceEEecC-CCCcceEEEEEEe-C-CCCEEEEEEecccCCeEEEEEEECCCCce--------
Confidence 789999988 77654432 1137788999999 9 7777776654 56799999988432
Q ss_pred cCCCCCCCCceeecceeeeccCCC----ceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCC
Q 017553 218 TDLPSKFPTKYVQFPVFIASVHSN----YVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECD 291 (369)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (369)
......+.. .+..+.|+ |+++++++.|+.+++|.+.... ....+..+...
T Consensus 325 ---------------~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~---------~~~~l~~~~~~ 380 (741)
T 2ecf_A 325 ---------------RVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKG---------KAAALTHGNWS 380 (741)
T ss_dssp ---------------EEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSS---------CEEESCCSSSC
T ss_pred ---------------EEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCC---------CeeeeeecceE
Confidence 111122221 34567776 7788888899988888765321 13344455566
Q ss_pred eeEE-EEeecCCccEEEEecCCC--eEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecC----CeEEEE
Q 017553 292 IWFI-KFSCDFHYNAAAIGNREG--KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCED----GAIWRW 364 (369)
Q Consensus 292 i~~~-~~s~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----g~i~vw 364 (369)
+..+ .|+|+++ .++++++.++ .+++|++.... .....+. . ...+..+.|+|||++|+....+ +.+++|
T Consensus 381 v~~~~~~s~dg~-~l~~~~~~~~~~~~~l~~~~~~g-~~~~~l~--~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~ 455 (741)
T 2ecf_A 381 VDELLAVDEKAG-LAYFRAGIESARESQIYAVPLQG-GQPQRLS--K-APGMHSASFARNASVYVDSWSNNSTPPQIELF 455 (741)
T ss_dssp EEEEEEEETTTT-EEEEEECSSCTTCBEEEEEETTC-CCCEECC--C-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred EEeEeEEeCCCC-EEEEEEeCCCCceEEEEEEEcCC-CCeeecc--c-CCCceEEEECCCCCEEEEEecCCCCCCeEEEE
Confidence 7776 5999997 2445566666 89999987522 2233444 2 3568899999999988876544 468888
Q ss_pred ecC
Q 017553 365 DAI 367 (369)
Q Consensus 365 ~~~ 367 (369)
+..
T Consensus 456 ~~~ 458 (741)
T 2ecf_A 456 RAN 458 (741)
T ss_dssp ETT
T ss_pred EcC
Confidence 754
No 141
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.94 E-value=6.9e-24 Score=202.34 Aligned_cols=282 Identities=11% Similarity=0.033 Sum_probs=210.0
Q ss_pred CCcCeEEEEEe-eccCCCccEEEEecCCcEEEEEecCCceeEEEeeeccCCccc-ceeEEEeeecCCCccEEEEeecCCe
Q 017553 32 GKRPLYAVVFN-FIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEE-SFYTVSWACNVDGIPFLVAGGINGI 109 (369)
Q Consensus 32 h~~~v~~~~~s-~~~~~~~~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~g~~~l~~~~~dg~ 109 (369)
|...|.+++|+ | +|+.||+++.+.+.+|+...+.... +. .+.. .+..++|+ +|+ .|+.++.++.
T Consensus 294 ~~~~v~~~~~S~p----dG~~la~~~~~~i~~~~~~~~~~~~-~~-----~~~~~~~~~~~~s---dg~-~l~~~s~~~~ 359 (1045)
T 1k32_A 294 SIPSKFAEDFSPL----DGDLIAFVSRGQAFIQDVSGTYVLK-VP-----EPLRIRYVRRGGD---TKV-AFIHGTREGD 359 (1045)
T ss_dssp ECGGGGEEEEEEC----GGGCEEEEETTEEEEECTTSSBEEE-CS-----CCSCEEEEEECSS---SEE-EEEEEETTEE
T ss_pred cccccceeeecCC----CCCEEEEEEcCEEEEEcCCCCceEE-cc-----CCCcceEEeeeEc---CCC-eEEEEECCCc
Confidence 44579999999 9 6899999886669999987765432 22 2344 66667665 787 7888777888
Q ss_pred EE-EEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCce
Q 017553 110 IR-VIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY 188 (369)
Q Consensus 110 i~-vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 188 (369)
+. +|++.+++.. .+.+|...+..++|+| +++.|++++.++.|++||+.+++...... +|...+.+++|+| +++
T Consensus 360 l~~~~d~~~~~~~-~l~~~~~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~tg~~~~~~~---~~~~~v~~~~~Sp-DG~ 433 (1045)
T 1k32_A 360 FLGIYDYRTGKAE-KFEENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIER---SREAMITDFTISD-NSR 433 (1045)
T ss_dssp EEEEEETTTCCEE-ECCCCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEE---CSSSCCCCEEECT-TSC
T ss_pred eEEEEECCCCCce-EecCCccceeeeEECC-CCCEEEEECCCCeEEEEECCCCceEEecc---CCCCCccceEECC-CCC
Confidence 88 9998776544 3347888999999999 89999999999999999999998887776 6888999999999 888
Q ss_pred EEEEEeeCC----------cEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEe
Q 017553 189 RIASCGMDN----------TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSK 256 (369)
Q Consensus 189 ~l~~~~~d~----------~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~ 256 (369)
+|++++.++ .|++||+.++. ...+..|...+..+.|+ |++|+.+
T Consensus 434 ~la~~~~~~~~~~~~~~~~~i~l~d~~~g~------------------------~~~l~~~~~~~~~~~~spdG~~l~~~ 489 (1045)
T 1k32_A 434 FIAYGFPLKHGETDGYVMQAIHVYDMEGRK------------------------IFAATTENSHDYAPAFDADSKNLYYL 489 (1045)
T ss_dssp EEEEEEEECSSTTCSCCEEEEEEEETTTTE------------------------EEECSCSSSBEEEEEECTTSCEEEEE
T ss_pred eEEEEecCccccccCCCCCeEEEEECCCCc------------------------EEEeeCCCcccCCceEcCCCCEEEEE
Confidence 888887654 89999998732 34455677778888887 7889988
Q ss_pred ecCCeEEEecCCCCCCCC----------------------------------CCCccceeeeccCCCCCeeEEEEeecCC
Q 017553 257 SVDNEIVLWEPKMKEQSP----------------------------------GEGTADILQKYPVPECDIWFIKFSCDFH 302 (369)
Q Consensus 257 ~~d~~i~i~d~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 302 (369)
+.++...+|+........ .......+..+..+...+..++++|++.
T Consensus 490 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~ 569 (1045)
T 1k32_A 490 SYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSI 569 (1045)
T ss_dssp ESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEE
T ss_pred ecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCe
Confidence 888877777754332100 0000112233444556788999999985
Q ss_pred ccEEEE-------------ecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 303 YNAAAI-------------GNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 303 ~~~l~~-------------~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
++++ ......|.+||+.+++.. .+. ..+..++|||||++|++++.+ .|++||+.+
T Consensus 570 --~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~---~l~-----~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~ 637 (1045)
T 1k32_A 570 --LIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT---EVK-----NNLTDLRLSADRKTVMVRKDD-GKIYTFPLE 637 (1045)
T ss_dssp --EEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE---EEE-----EEEEEEEECTTSCEEEEEETT-SCEEEEESS
T ss_pred --EEEEecccCcccccccccCCCceEEEEECCCCcEE---Eee-----cCcceEEECCCCCEEEEEcCC-cEEEEeCcc
Confidence 5553 123567889999888532 222 458899999999999999866 799999865
No 142
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.93 E-value=2.6e-22 Score=168.49 Aligned_cols=270 Identities=10% Similarity=0.037 Sum_probs=174.3
Q ss_pred EEEEEecCC-ceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeec--CCeEEEEEcCCcc--ccceeeccccceEEE
Q 017553 60 VTVYQCLEG-GVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI--NGIIRVIDVSNEK--LHKSFVGHGDSINEI 134 (369)
Q Consensus 60 v~iw~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~--dg~i~vwd~~~~~--~~~~~~~~~~~v~~~ 134 (369)
|.+|++... ..+..+... .+......++|+ |+|+ +++++.. ++.|++|++.+++ .+..+..+...+..+
T Consensus 18 i~v~~~d~~tg~~~~~~~~---~~~~~p~~~a~s--pdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~ 91 (347)
T 3hfq_A 18 IYQGTLDTTAKTLTNDGLL---AATQNPTYLALS--AKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYV 91 (347)
T ss_dssp EEEEEEETTTTEEEEEEEE---EECSCCCCEEEC--TTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEE
T ss_pred EEEEEEcCCCCeEEEeeee---eccCCcceEEEc--cCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEE
Confidence 778777542 222222211 123445567777 9998 6655543 6899999997665 444555577789999
Q ss_pred EecCCCCceEEEEe-CCCcEEEEEccC-Cc--EEEEeeccC------CCCCcEEEEEecCCCceEEEEEeeCCcEEEEEc
Q 017553 135 RTQPLKPSLVVSAS-KDESVRLWNVQT-GI--CILIFAGAG------GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSM 204 (369)
Q Consensus 135 ~~~~~~~~~l~s~~-~dg~i~vwd~~~-~~--~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~ 204 (369)
+|+| ++++|++++ .++.|.+|++.. +. .+..+.... .+...+.+++|+| +++++++...++.|.+|++
T Consensus 92 a~sp-dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-dg~l~v~~~~~~~v~~~~~ 169 (347)
T 3hfq_A 92 AVDE-ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-DNRLAVIDLGSDKVYVYNV 169 (347)
T ss_dssp EEET-TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT-TSCEEEEETTTTEEEEEEE
T ss_pred EECC-CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC-CCcEEEEeCCCCEEEEEEE
Confidence 9999 888777777 789999999963 32 223332100 0123588999999 7677777777889999999
Q ss_pred cC-ceeeeeeeeeccCCCCCCCCceeecceeeecc-CCCceeeeeee--CcEEEE-eecCCeEEEecCCCCCCCCCCCcc
Q 017553 205 KE-FWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV-HSNYVDCNRWL--GDFILS-KSVDNEIVLWEPKMKEQSPGEGTA 279 (369)
Q Consensus 205 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~--~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~ 279 (369)
.. +.... ...... ....+..++|+ |+++++ ...++.|.+|++..... ..
T Consensus 170 ~~~g~~~~---------------------~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g-----~~ 223 (347)
T 3hfq_A 170 SDAGQLSE---------------------QSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTG-----AF 223 (347)
T ss_dssp CTTSCEEE---------------------EEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTT-----EE
T ss_pred CCCCcEEE---------------------eeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCC-----ce
Confidence 83 21110 111111 12245667786 665555 56688999999875211 11
Q ss_pred ceeeeccCCC------CCeeEEEEeecCCccEE-EEecCCCeEEEEEccC-CCceeEEEeecCCCccceEEEEecCCCCE
Q 017553 280 DILQKYPVPE------CDIWFIKFSCDFHYNAA-AIGNREGKIFVWELQS-SPPVLIARLSHAQSKSPIRQTAMSYDGST 351 (369)
Q Consensus 280 ~~~~~~~~~~------~~i~~~~~s~~~~~~~l-~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 351 (369)
..+....... ..+..++|+|+++ +| ++...++.|.+|++.. +....+..+. .+...+..++|+|||++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~i~~spdG~--~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~--~~~~~~~~~~~spdg~~ 299 (347)
T 3hfq_A 224 TQLGIVKTIPADYTAHNGAAAIRLSHDGH--FLYVSNRGYNTLAVFAVTADGHLTLIQQIS--TEGDFPRDFDLDPTEAF 299 (347)
T ss_dssp EEEEEEESSCTTCCSCCEEEEEEECTTSC--EEEEEEETTTEEEEEEECGGGCEEEEEEEE--CSSSCCCEEEECTTSSE
T ss_pred EEeeeeeecCCCCCCCCcceeEEECCCCC--EEEEEeCCCCEEEEEEECCCCcEEEeEEEe--cCCCCcCeEEECCCCCE
Confidence 1122222111 3477899999997 44 5666789999999973 3334455554 44456889999999998
Q ss_pred EEEeecC-CeEEEEecC
Q 017553 352 ILSCCED-GAIWRWDAI 367 (369)
Q Consensus 352 l~s~~~d-g~i~vw~~~ 367 (369)
|++++.+ +.|.+|++.
T Consensus 300 l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 300 VVVVNQNTDNATLYARD 316 (347)
T ss_dssp EEEEETTTTEEEEEEEC
T ss_pred EEEEEcCCCcEEEEEEe
Confidence 8888754 899999664
No 143
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.93 E-value=1.2e-22 Score=170.07 Aligned_cols=279 Identities=11% Similarity=0.073 Sum_probs=178.2
Q ss_pred cCCcCeEEEEEeeccCCCccEEEEecCC-c-EEEEEec--CCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEe-e
Q 017553 31 EGKRPLYAVVFNFIDSRYFNVFATVGGN-R-VTVYQCL--EGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG-G 105 (369)
Q Consensus 31 ~h~~~v~~~~~s~~~~~~~~~la~~~~~-~-v~iw~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~-~ 105 (369)
.|...+.+++|+| ++++|++++.+ + |.+|++. ++.. ..+.... ....+..++|+ |+|+ +|+++ .
T Consensus 35 ~~~~~~~~~~~sp----dg~~l~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~s--~dg~-~l~~~~~ 103 (343)
T 1ri6_A 35 DVPGQVQPMVVSP----DKRYLYVGVRPEFRVLAYRIAPDDGAL-TFAAESA---LPGSLTHISTD--HQGQ-FVFVGSY 103 (343)
T ss_dssp ECSSCCCCEEECT----TSSEEEEEETTTTEEEEEEECTTTCCE-EEEEEEE---CSSCCSEEEEC--TTSS-EEEEEET
T ss_pred ecCCCCceEEECC----CCCEEEEeecCCCeEEEEEecCCCCce-eeccccc---cCCCCcEEEEc--CCCC-EEEEEec
Confidence 4777899999999 68878777764 4 9999987 4442 2222221 12266778887 9998 56555 4
Q ss_pred cCCeEEEEEc---CCccccceeeccccceEEEEecCCCCceEEEEe-CCCcEEEEEccC-CcEEEEe--eccCCCCCcEE
Q 017553 106 INGIIRVIDV---SNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS-KDESVRLWNVQT-GICILIF--AGAGGHRNEVL 178 (369)
Q Consensus 106 ~dg~i~vwd~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~vwd~~~-~~~~~~~--~~~~~~~~~v~ 178 (369)
.++.|.+||+ ...+....+..+ ..+.+++|+| +++.+++++ .++.|++||+.+ ++..... .........+.
T Consensus 104 ~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 181 (343)
T 1ri6_A 104 NAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISP-DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPR 181 (343)
T ss_dssp TTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEE
T ss_pred CCCeEEEEECCCCccccccccccCC-CCceEEEECC-CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcc
Confidence 5899999999 444455555543 4588999999 777777666 899999999987 6543221 11112345788
Q ss_pred EEEecCCCceEE-EEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeec---cCCCceeeeeee--CcE
Q 017553 179 SVDFHPSDIYRI-ASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS---VHSNYVDCNRWL--GDF 252 (369)
Q Consensus 179 ~~~~~~~~~~~l-~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~--~~~ 252 (369)
.++|+| +++++ +++..++.|.+|+++......... ....... .....+..++|+ +++
T Consensus 182 ~~~~~p-dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~----------------~~~~~~~~~~~~~~~~~~i~~s~dg~~ 244 (343)
T 1ri6_A 182 HMVFHP-NEQYAYCVNELNSSVDVWELKDPHGNIECV----------------QTLDMMPENFSDTRWAADIHITPDGRH 244 (343)
T ss_dssp EEEECT-TSSEEEEEETTTTEEEEEESSCTTSCCEEE----------------EEEECSCTTCCSCCCEEEEEECTTSSE
T ss_pred eEEECC-CCCEEEEEeCCCCEEEEEEecCCCCcEEEE----------------eeccccCccccccCCccceEECCCCCE
Confidence 999999 66655 555588999999996411100000 0011111 112345678887 666
Q ss_pred EE-EeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEec-CCCeEEEEEcc--CCCceeE
Q 017553 253 IL-SKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN-REGKIFVWELQ--SSPPVLI 328 (369)
Q Consensus 253 l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~-~dg~i~i~d~~--~~~~~~~ 328 (369)
++ +...++.|.+||+..... ....+..+..+.. +..++|+|+++ +|++++ .++.|.+|++. +++...+
T Consensus 245 l~v~~~~~~~i~v~d~~~~~~-----~~~~~~~~~~~~~-~~~~~~s~dg~--~l~~~~~~~~~v~v~~~d~~~g~~~~~ 316 (343)
T 1ri6_A 245 LYACDRTASLITVFSVSEDGS-----VLSKEGFQPTETQ-PRGFNVDHSGK--YLIAAGQKSHHISVYEIVGEQGLLHEK 316 (343)
T ss_dssp EEEEETTTTEEEEEEECTTSC-----CEEEEEEEECSSS-CCCEEECTTSS--EEEEECTTTCEEEEEEEETTTTEEEEE
T ss_pred EEEEecCCCEEEEEEEcCCCC-----ceEEeeeecCCCc-cceEEECCCCC--EEEEecCCCCeEEEEEEcCCCceeeEc
Confidence 66 555789999999973210 1123444444433 78899999997 555555 78999999655 5544445
Q ss_pred EEeecCCCccceEEEEecCCCC
Q 017553 329 ARLSHAQSKSPIRQTAMSYDGS 350 (369)
Q Consensus 329 ~~~~~~~~~~~v~~~~~s~~~~ 350 (369)
..+.. .....+++|.|+..
T Consensus 317 ~~~~~---g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 317 GRYAV---GQGPMWVVVNAHEG 335 (343)
T ss_dssp EEEEC---SSSCCEEEEEEEC-
T ss_pred ccccc---CCCCeeEEEEcccC
Confidence 55542 14566788877643
No 144
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.93 E-value=2.7e-23 Score=198.28 Aligned_cols=275 Identities=12% Similarity=-0.008 Sum_probs=207.5
Q ss_pred ecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecC-CceeEEEeeeccCCcccceeEEEeeecCCCccEEEEee
Q 017553 28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLE-GGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG 105 (369)
Q Consensus 28 ~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~ 105 (369)
.+.+|...+.+++|++ + .++++++.++ +.||.+.. +.....+.. +. .+...+|+ |+|+ .|+.+
T Consensus 198 ~l~~~~~~v~~~~~s~----d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~-----~~-~~~~~~~S--pDG~-~la~~- 262 (1045)
T 1k32_A 198 KIVDMSTHVSSPVIVG----H-RIYFITDIDGFGQIYSTDLDGKDLRKHTS-----FT-DYYPRHLN--TDGR-RILFS- 262 (1045)
T ss_dssp EEECCSSCCEEEEEET----T-EEEEEECTTSSCEEEEEETTSCSCEECCC-----CC-SSCEEEEE--ESSS-CEEEE-
T ss_pred ECcCCCCcccceEEeC----C-EEEEEEeccCceEEEEEeCCCCcceEecC-----CC-CcceeeEc--CCCC-EEEEE-
Confidence 4578999999999998 3 6667777766 88898764 434444432 22 35566777 9998 67776
Q ss_pred cCCeEEEEEcCCccccceeec-----------cccceEEEEec-CCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCC
Q 017553 106 INGIIRVIDVSNEKLHKSFVG-----------HGDSINEIRTQ-PLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGH 173 (369)
Q Consensus 106 ~dg~i~vwd~~~~~~~~~~~~-----------~~~~v~~~~~~-~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 173 (369)
.++.|++|++...+ +..+.. |...+.+++|+ | ++..|++++ ++.|.+|++..++... +. .|
T Consensus 263 ~~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~p-dG~~la~~~-~~~i~~~~~~~~~~~~-~~---~~ 335 (1045)
T 1k32_A 263 KGGSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPL-DGDLIAFVS-RGQAFIQDVSGTYVLK-VP---EP 335 (1045)
T ss_dssp ETTEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEEC-GGGCEEEEE-TTEEEEECTTSSBEEE-CS---CC
T ss_pred eCCEEEEecCCceE-eeeeccCcccccccccccccccceeeecCC-CCCEEEEEE-cCEEEEEcCCCCceEE-cc---CC
Confidence 58999999984433 334443 44579999999 9 888888877 7899999998877544 43 57
Q ss_pred CC-cEEEEEecCCCceEEEEEeeCCcEE-EEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--
Q 017553 174 RN-EVLSVDFHPSDIYRIASCGMDNTVK-IWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-- 249 (369)
Q Consensus 174 ~~-~v~~~~~~~~~~~~l~~~~~d~~v~-i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-- 249 (369)
.. .+..++|+ ++..|+.++.+..+. +||+..+. ...+..|...+..++|+
T Consensus 336 ~~~~~~~~~~s--dg~~l~~~s~~~~l~~~~d~~~~~------------------------~~~l~~~~~~~~~~~~SpD 389 (1045)
T 1k32_A 336 LRIRYVRRGGD--TKVAFIHGTREGDFLGIYDYRTGK------------------------AEKFEENLGNVFAMGVDRN 389 (1045)
T ss_dssp SCEEEEEECSS--SEEEEEEEETTEEEEEEEETTTCC------------------------EEECCCCCCSEEEEEECTT
T ss_pred CcceEEeeeEc--CCCeEEEEECCCceEEEEECCCCC------------------------ceEecCCccceeeeEECCC
Confidence 77 89999999 677788887777888 88887621 12233667788899997
Q ss_pred CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCC----------CeEEEEE
Q 017553 250 GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE----------GKIFVWE 319 (369)
Q Consensus 250 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~d----------g~i~i~d 319 (369)
|++|++++.++.|++||+.+++ .......+...+..++|+|+++ +|++++.+ +.|++||
T Consensus 390 G~~la~~~~~~~v~~~d~~tg~---------~~~~~~~~~~~v~~~~~SpDG~--~la~~~~~~~~~~~~~~~~~i~l~d 458 (1045)
T 1k32_A 390 GKFAVVANDRFEIMTVDLETGK---------PTVIERSREAMITDFTISDNSR--FIAYGFPLKHGETDGYVMQAIHVYD 458 (1045)
T ss_dssp SSEEEEEETTSEEEEEETTTCC---------EEEEEECSSSCCCCEEECTTSC--EEEEEEEECSSTTCSCCEEEEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCc---------eEEeccCCCCCccceEECCCCC--eEEEEecCccccccCCCCCeEEEEE
Confidence 7899999999999999998875 3444445677889999999997 66666543 4899999
Q ss_pred ccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEec
Q 017553 320 LQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 366 (369)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~ 366 (369)
+.+++ ...+. .|...+..++|+|||++|+.++.++...+|+.
T Consensus 459 ~~~g~---~~~l~--~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~ 500 (1045)
T 1k32_A 459 MEGRK---IFAAT--TENSHDYAPAFDADSKNLYYLSYRSLDPSPDR 500 (1045)
T ss_dssp TTTTE---EEECS--CSSSBEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred CCCCc---EEEee--CCCcccCCceEcCCCCEEEEEecccCCcCcch
Confidence 99873 34444 66678899999999999999998888888864
No 145
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.92 E-value=4.8e-23 Score=173.03 Aligned_cols=282 Identities=11% Similarity=-0.031 Sum_probs=177.2
Q ss_pred EEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCC
Q 017553 39 VVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN 117 (369)
Q Consensus 39 ~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~ 117 (369)
+++++ ++.++++++.++ |.+||..+++.+..+... ....+..++|+ |+|+.+++++..++.|.+||+.+
T Consensus 5 ~~~~~----~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~----~~~~~~~~~~s--~dg~~~~v~~~~~~~i~~~d~~t 74 (349)
T 1jmx_B 5 PALKA----GHEYMIVTNYPNNLHVVDVASDTVYKSCVMP----DKFGPGTAMMA--PDNRTAYVLNNHYGDIYGIDLDT 74 (349)
T ss_dssp CCCCT----TCEEEEEEETTTEEEEEETTTTEEEEEEECS----SCCSSCEEEEC--TTSSEEEEEETTTTEEEEEETTT
T ss_pred ccccC----CCEEEEEeCCCCeEEEEECCCCcEEEEEecC----CCCCCceeEEC--CCCCEEEEEeCCCCcEEEEeCCC
Confidence 44555 578888888777 999999988877766531 11145567776 99984455666789999999999
Q ss_pred ccccceeecc------ccceEEEEecCCCCceEEEEeCC------------CcEEEEEccCCcE---EEEeeccCCCCCc
Q 017553 118 EKLHKSFVGH------GDSINEIRTQPLKPSLVVSASKD------------ESVRLWNVQTGIC---ILIFAGAGGHRNE 176 (369)
Q Consensus 118 ~~~~~~~~~~------~~~v~~~~~~~~~~~~l~s~~~d------------g~i~vwd~~~~~~---~~~~~~~~~~~~~ 176 (369)
++.+..+... ...+..++|+| ++++|++++.+ +.|.+||+.+++. +..+. +...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~----~~~~ 149 (349)
T 1jmx_B 75 CKNTFHANLSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP----MPRQ 149 (349)
T ss_dssp TEEEEEEESCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE----CCSS
T ss_pred CcEEEEEEcccccccccccccceEECC-CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc----CCCc
Confidence 8877766532 23478999999 88888888765 8999999988543 33333 4446
Q ss_pred EEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCC---ceeeeeee--C-
Q 017553 177 VLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN---YVDCNRWL--G- 250 (369)
Q Consensus 177 v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~--~- 250 (369)
+.+++|+| +++ +++++ +.|.+||+.+++............+....... ........... ....+.+. +
T Consensus 150 ~~~~~~s~-dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~ 223 (349)
T 1jmx_B 150 VYLMRAAD-DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDV--LYFWPHQSPRHEFSMLYTIARFKDDK 223 (349)
T ss_dssp CCCEEECT-TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBC--CCCCCCCCTTCEEEEEEEEEEC----
T ss_pred ccceeECC-CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccc--eeeecCCCcceeEEeeeeeeecCCCc
Confidence 88999999 777 55543 45999999886533222111000000000000 00000000000 11112221 0
Q ss_pred ----------cEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEee-cCCccEEEEecCCCeEEEEE
Q 017553 251 ----------DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSC-DFHYNAAAIGNREGKIFVWE 319 (369)
Q Consensus 251 ----------~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~~~l~~~~~dg~i~i~d 319 (369)
.++.....++.+++|++. .....+..++|+| +++ +++++ ++.|.+||
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~sp~dg~--~l~~~--~~~v~~~d 281 (349)
T 1jmx_B 224 QDPATADLLYGYLSVDLKTGKTHTQEFA------------------DLTELYFTGLRSPKDPN--QIYGV--LNRLAKYD 281 (349)
T ss_dssp ---CCCEEEEEEEEEETTTCCEEEEEEE------------------ECSSCEEEEEECSSCTT--EEEEE--ESEEEEEE
T ss_pred CCccccccceeEEEEeccCCcEEecccc------------------cCCCcceeeEecCCCCC--EEEEE--cCeEEEEE
Confidence 011122223344444332 2345677899999 986 66666 88999999
Q ss_pred ccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 320 LQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
+.+++ ....+... ..+.+++|+|+|++|++++.++.|++||+++
T Consensus 282 ~~~~~--~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~ 325 (349)
T 1jmx_B 282 LKQRK--LIKAANLD---HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDT 325 (349)
T ss_dssp TTTTE--EEEEEECS---SCCCEEEECSSSSCEEEESBSSEEEEEETTT
T ss_pred CccCe--EEEEEcCC---CCccceEECCCCCEEEEecCCCeEEEEeccc
Confidence 99873 44444421 3567899999999998888999999999864
No 146
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.92 E-value=1.6e-23 Score=180.06 Aligned_cols=241 Identities=11% Similarity=0.114 Sum_probs=163.7
Q ss_pred ceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccc----------cc-----eeeccccceEEEEecCCCCceEE----
Q 017553 85 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL----------HK-----SFVGHGDSINEIRTQPLKPSLVV---- 145 (369)
Q Consensus 85 ~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~----------~~-----~~~~~~~~v~~~~~~~~~~~~l~---- 145 (369)
.++.++++ +++. ++++++.++ +++|+...... +. ....+...|.+++|+| ++++|+
T Consensus 38 ~~n~lavs--~~~~-~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~lav~~~ 112 (434)
T 2oit_A 38 RSSLLAVS--NKYG-LVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSC-DNLTLSACMM 112 (434)
T ss_dssp CCBCEEEE--TTTT-EEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECT-TSCEEEEEEE
T ss_pred CccEEEEe--cCCC-EEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcC-CCCEEEEEEe
Confidence 56678888 8887 899998887 89988642111 00 1112556799999999 788888
Q ss_pred EEeCCCcEEEEEccCC--------cEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeec
Q 017553 146 SASKDESVRLWNVQTG--------ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTW 217 (369)
Q Consensus 146 s~~~dg~i~vwd~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~ 217 (369)
+|+.|+.|++||++++ +.+..+....+|...|.+++|+|.++.+|++++.||+|++||++++
T Consensus 113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~---------- 182 (434)
T 2oit_A 113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET---------- 182 (434)
T ss_dssp ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS----------
T ss_pred ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC----------
Confidence 7889999999999765 3333334334799999999999954889999999999999999983
Q ss_pred cCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccC-------C
Q 017553 218 TDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV-------P 288 (369)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~-------~ 288 (369)
........|...|.+++|+ |++|++|+.||.|++||++ ++ ....+.. |
T Consensus 183 -------------~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~---------~~~~~~~~~~~~~~~ 239 (434)
T 2oit_A 183 -------------VKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQ---------EKKVIPCPPFYESDH 239 (434)
T ss_dssp -------------EEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CC---------EEEEECCCTTCCTTS
T ss_pred -------------cceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cc---------ccccccCCcccCCCC
Confidence 1233445688899999998 8899999999999999998 32 1222211 2
Q ss_pred CCCeeEEEEeecCCccEEE-EecCCC------eEEEEEccCCCc---eeEEEeecC-----CCccceEEEEecCCCCEEE
Q 017553 289 ECDIWFIKFSCDFHYNAAA-IGNREG------KIFVWELQSSPP---VLIARLSHA-----QSKSPIRQTAMSYDGSTIL 353 (369)
Q Consensus 289 ~~~i~~~~~s~~~~~~~l~-~~~~dg------~i~i~d~~~~~~---~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~ 353 (369)
...+.+++|++++. +++ ....+| .+++|++...+. .....+... +.+.+-..+.+-++.++++
T Consensus 240 ~~~v~~v~w~~~~~--~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~ 317 (434)
T 2oit_A 240 PVRVLDVLWIGTYV--FAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVL 317 (434)
T ss_dssp CEEEEEEEEEETTE--EEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEE
T ss_pred ceeEEEEEEecCce--EEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEE
Confidence 23788999999874 443 333443 389999986532 222222211 2223333344446767666
Q ss_pred Eeec-CCeEEEEe
Q 017553 354 SCCE-DGAIWRWD 365 (369)
Q Consensus 354 s~~~-dg~i~vw~ 365 (369)
+++. .+.|.|..
T Consensus 318 v~s~~s~dv~vl~ 330 (434)
T 2oit_A 318 AASAASTEVSILA 330 (434)
T ss_dssp EEETTCSBCEEEE
T ss_pred EecCCCCceeEEE
Confidence 6553 33355544
No 147
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.92 E-value=5.6e-23 Score=184.50 Aligned_cols=268 Identities=11% Similarity=0.052 Sum_probs=188.9
Q ss_pred CCcCeEEEEEeeccCCCccEEEEecC-Cc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeec---
Q 017553 32 GKRPLYAVVFNFIDSRYFNVFATVGG-NR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI--- 106 (369)
Q Consensus 32 h~~~v~~~~~s~~~~~~~~~la~~~~-~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~--- 106 (369)
+..+|++++|+| ||+.||+++. ++ +.||++.+++. ..+.. .+...+..++|+ || + ++++++.
T Consensus 20 ~~~~~~~~~~~~----DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~----~~~~~~~~~~~s--pd-~-~l~~~~~~~g 86 (582)
T 3o4h_A 20 IAVEKYSLQGVV----DGDKLLVVGFSEGSVNAYLYDGGET-VKLNR----EPINSVLDPHYG--VG-R-VILVRDVSKG 86 (582)
T ss_dssp HHSCEEEEEEEE----TTTEEEEEEEETTEEEEEEEETTEE-EECCS----SCCSEECEECTT--CS-E-EEEEEECSTT
T ss_pred hccchheeecCC----CCCeEEEEEccCCceeEEEEcCCCc-Eeeec----ccccccccccCC--CC-e-EEEEeccCCC
Confidence 356799999999 6999998876 66 99999855543 33331 233578888887 88 6 7887765
Q ss_pred CCeEEEEEcCC---ccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEec
Q 017553 107 NGIIRVIDVSN---EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFH 183 (369)
Q Consensus 107 dg~i~vwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 183 (369)
+...++|.+.. +... .+... ..+...+|+|+....+++.+.++.+.+||+.+++...... +.. .+++|+
T Consensus 87 ~~~~~l~~~~~~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~----~~~--~~~~~s 158 (582)
T 3o4h_A 87 AEQHALFKVNTSRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR----LPG--FGFVSD 158 (582)
T ss_dssp SCCEEEEEEETTSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE----ESS--CEEEEE
T ss_pred CcceEEEEEeccCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec----CCC--ceEEEC
Confidence 45566665543 2222 33222 2234667888333444444455556699999887666554 333 789999
Q ss_pred CCCceEEEEEeeC----CcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEee
Q 017553 184 PSDIYRIASCGMD----NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS 257 (369)
Q Consensus 184 ~~~~~~l~~~~~d----~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~ 257 (369)
| +++.|++++.+ +.|++||+.+++ ...+..|...+..++|+ |+.|+++.
T Consensus 159 p-DG~~la~~~~~~~~~~~i~~~d~~~g~------------------------~~~l~~~~~~~~~~~~SpDG~~l~~~~ 213 (582)
T 3o4h_A 159 I-RGDLIAGLGFFGGGRVSLFTSNLSSGG------------------------LRVFDSGEGSFSSASISPGMKVTAGLE 213 (582)
T ss_dssp E-ETTEEEEEEEEETTEEEEEEEETTTCC------------------------CEEECCSSCEEEEEEECTTSCEEEEEE
T ss_pred C-CCCEEEEEEEcCCCCeEEEEEcCCCCC------------------------ceEeecCCCccccceECCCCCEEEEcc
Confidence 9 88999988877 789999988732 23456778888999997 78888888
Q ss_pred cCC--eEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEE--------EeecCCccEEEEecCCCeEEEEEccCCCcee
Q 017553 258 VDN--EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIK--------FSCDFHYNAAAIGNREGKIFVWELQSSPPVL 327 (369)
Q Consensus 258 ~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 327 (369)
.++ .|++||+.+++. . .+..+...+..++ |+||+. ++++++.++.+++|++ ++ .
T Consensus 214 ~~~~~~i~~~d~~~~~~---------~-~~~~~~~~~~~~~~~~~~~~~~spdg~--~~~~~~~~g~~~l~~~--g~--~ 277 (582)
T 3o4h_A 214 TAREARLVTVDPRDGSV---------E-DLELPSKDFSSYRPTAITWLGYLPDGR--LAVVARREGRSAVFID--GE--R 277 (582)
T ss_dssp CSSCEEEEEECTTTCCE---------E-ECCCSCSHHHHHCCSEEEEEEECTTSC--EEEEEEETTEEEEEET--TE--E
T ss_pred CCCeeEEEEEcCCCCcE---------E-EccCCCcChhhhhhccccceeEcCCCc--EEEEEEcCCcEEEEEE--CC--e
Confidence 888 899999988752 2 3444445555566 999994 8889999999999999 42 2
Q ss_pred EEEeecCCCccceEEEEecCCCCEEEEeecCCe---EEEEecC
Q 017553 328 IARLSHAQSKSPIRQTAMSYDGSTILSCCEDGA---IWRWDAI 367 (369)
Q Consensus 328 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~---i~vw~~~ 367 (369)
.. ...+.+.+++|+ +++++++++.+.. +++|+..
T Consensus 278 ~~-----~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 278 VE-----APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp EC-----CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred ec-----cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCC
Confidence 22 122578899999 9999999888754 7777654
No 148
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.92 E-value=1.4e-22 Score=186.73 Aligned_cols=292 Identities=8% Similarity=-0.025 Sum_probs=187.7
Q ss_pred ccceeeeeecccCCc---CeEEEEEeeccCCCccEEEEecCC---------c-EEEEEecCCceeEEEeeeccCCcccce
Q 017553 20 KREYRVTNKLQEGKR---PLYAVVFNFIDSRYFNVFATVGGN---------R-VTVYQCLEGGVIAALQSYVDEDKEESF 86 (369)
Q Consensus 20 ~~~~~~~~~~~~h~~---~v~~~~~s~~~~~~~~~la~~~~~---------~-v~iw~~~~~~~~~~~~~~~~~~~~~~v 86 (369)
....+....+.+|.. .|.+++||| +|++||+++.+ + +.+||+.+++. ..+... ..+...+
T Consensus 44 ~~~g~~~~~~~~~~~~~~~v~~~~~Sp----Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~--~~~~~~~ 116 (723)
T 1xfd_A 44 VETNTSTVLIEGKKIESLRAIRYEISP----DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPP--EVSNAKL 116 (723)
T ss_dssp GGGCCCEEEECTTTTTTTTCSEEEECT----TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCT--TCCSCCC
T ss_pred CCCCcEEEEeccccccccccceEEECC----CCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCC--ccccccc
Confidence 333344455566654 499999999 68999998763 4 88999888765 333321 1334457
Q ss_pred eEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccce------------------EEEEecCCCCceEEEEe
Q 017553 87 YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSI------------------NEIRTQPLKPSLVVSAS 148 (369)
Q Consensus 87 ~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v------------------~~~~~~~~~~~~l~s~~ 148 (369)
..++|+ |||+ .|+.++. +.|++||+.+++.......+...+ .+++|+| +++.|++++
T Consensus 117 ~~~~~S--PdG~-~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp-Dg~~la~~~ 191 (723)
T 1xfd_A 117 QYAGWG--PKGQ-QLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAA 191 (723)
T ss_dssp SBCCBC--SSTT-CEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEE
T ss_pred cccEEC--CCCC-EEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECC-CCCEEEEEE
Confidence 778887 9999 7777775 799999998887665555443333 7899999 888888887
Q ss_pred CCC----------------------------------cEEEEEccCCcEEEEeecc---CCCCCcEEEEEecCCCceEEE
Q 017553 149 KDE----------------------------------SVRLWNVQTGICILIFAGA---GGHRNEVLSVDFHPSDIYRIA 191 (369)
Q Consensus 149 ~dg----------------------------------~i~vwd~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~ 191 (369)
.|+ .|++||+.+++....+... ..+...+..++|+| ++++++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sp-Dg~~l~ 270 (723)
T 1xfd_A 192 INDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWAT-STKVAV 270 (723)
T ss_dssp EECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESS-SSEEEE
T ss_pred ECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeC-CCeEEE
Confidence 553 7999999988765555420 01367899999999 888887
Q ss_pred EEeeC----CcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeee-ccCCCce----eeeeee--CcEEEE--eec
Q 017553 192 SCGMD----NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA-SVHSNYV----DCNRWL--GDFILS--KSV 258 (369)
Q Consensus 192 ~~~~d----~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v----~~~~~~--~~~l~~--~~~ 258 (369)
+.... ..|++||+.+++. .... ..+...+ ..+.|+ |+.|+. ...
T Consensus 271 ~~~~~~~~~~~i~~~d~~~g~~-----------------------~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 327 (723)
T 1xfd_A 271 TWLNRAQNVSILTLCDATTGVC-----------------------TKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIP 327 (723)
T ss_dssp EEEETTSCEEEEEEEETTTCCE-----------------------EEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEEC
T ss_pred EEEcCCCCeEEEEEEeCCCCcc-----------------------eEEEEeccCCEEeccCCCceEcCCCCeEEEEEecc
Confidence 66543 5799999987432 1111 1122332 256776 665554 455
Q ss_pred CC------eEEEecC-CCCCCCCCCCccceeeeccCCCCCeeE-EEEeecCCccEEE-EecCC--CeEEEEEccCCCcee
Q 017553 259 DN------EIVLWEP-KMKEQSPGEGTADILQKYPVPECDIWF-IKFSCDFHYNAAA-IGNRE--GKIFVWELQSSPPVL 327 (369)
Q Consensus 259 d~------~i~i~d~-~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~s~~~~~~~l~-~~~~d--g~i~i~d~~~~~~~~ 327 (369)
++ .|.+||+ ..+... ....+......+.. ++|+|+++ .|+ ++..+ +.+++|++.......
T Consensus 328 ~~~~~~~~~l~~~d~~~~~~~~-------~~~~l~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~l~~~~~~~~~~ 398 (723)
T 1xfd_A 328 QGGRGKFYHITVSSSQPNSSND-------NIQSITSGDWDVTKILAYDEKGN--KIYFLSTEDLPRRRQLYSANTVGNFN 398 (723)
T ss_dssp CSSSSCEEEEEEECSSCCSSSC-------CCCBSCCSSSCEEEEEEEETTTT--EEEEEESSSCTTCCEEEEECSSTTCC
T ss_pred cCCCcceeEEEEEeccCCCCcc-------ceeEeecCCeEEEeeeEEcCCCC--EEEEEEcCCCCcceEEEEEeCCCCCC
Confidence 66 5777773 333200 01222222233443 68999997 554 44444 789999987542211
Q ss_pred EEEeec-CCCccceEEEEecCCCCEEEEee
Q 017553 328 IARLSH-AQSKSPIRQTAMSYDGSTILSCC 356 (369)
Q Consensus 328 ~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~ 356 (369)
...+.. ..+...+..++|+|||++|+...
T Consensus 399 ~~~l~~~~~~~~~~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 399 RQCLSCDLVENCTYFSASFSHSMDFFLLKC 428 (723)
T ss_dssp CBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred cceecccccCCCCeEEEEECCCCCEEEEEc
Confidence 222321 01456788999999999887653
No 149
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.91 E-value=1.6e-21 Score=164.01 Aligned_cols=237 Identities=9% Similarity=0.057 Sum_probs=172.5
Q ss_pred cceeEEEeeecCCCccEEEEeec-------CCeEEEEEcCCccccceeeccccceEEEEecCCCCc-eEEEEeCCCcEEE
Q 017553 84 ESFYTVSWACNVDGIPFLVAGGI-------NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPS-LVVSASKDESVRL 155 (369)
Q Consensus 84 ~~v~~~~~~~~~~g~~~l~~~~~-------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~dg~i~v 155 (369)
..+..++++ |+|+ .+++++. ++.|.+||..+++.+..+.. ...+..++|+| +++ ++++...++.|.+
T Consensus 41 ~~~~~~~~s--~dg~-~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~v~~~~~~~v~~ 115 (353)
T 3vgz_A 41 KGAYEMAYS--QQEN-ALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINN-TTQTLWFGNTVNSAVTA 115 (353)
T ss_dssp SSEEEEEEE--TTTT-EEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEET-TTTEEEEEETTTTEEEE
T ss_pred cCccceEEC--CCCC-EEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECC-CCCEEEEEecCCCEEEE
Confidence 455667777 9998 6666553 67899999999988887764 34578899999 666 5566666899999
Q ss_pred EEccCCcEEEEeeccCCCCC---------cEEEEEecCCCceEEEEEe--eCCcEEEEEccCceeeeeeeeeccCCCCCC
Q 017553 156 WNVQTGICILIFAGAGGHRN---------EVLSVDFHPSDIYRIASCG--MDNTVKIWSMKEFWTYVEKSFTWTDLPSKF 224 (369)
Q Consensus 156 wd~~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~~l~~~~--~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~ 224 (369)
||..+++.+..+.. +.. .+.+++|+| +++.+++++ .++.|.+||+.+++
T Consensus 116 ~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~~~~---------------- 175 (353)
T 3vgz_A 116 IDAKTGEVKGRLVL---DDRKRTEEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGGNIK---------------- 175 (353)
T ss_dssp EETTTCCEEEEEES---CCCCCCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETTTTE----------------
T ss_pred EeCCCCeeEEEEec---CCCccccccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCCCCc----------------
Confidence 99999998888763 221 278899999 666555554 47889999998843
Q ss_pred CCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccC----CCCCeeEEEEe
Q 017553 225 PTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV----PECDIWFIKFS 298 (369)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~s 298 (369)
....+..+...+.++.|+ ++++++++.++.|.+||+.+++ .+..+.. +...+..++|+
T Consensus 176 -------~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~---------~~~~~~~~~~~~~~~~~~~~~s 239 (353)
T 3vgz_A 176 -------LKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNK---------ILSRKKLLDDGKEHFFINISLD 239 (353)
T ss_dssp -------EEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTE---------EEEEEECCCSSSCCCEEEEEEE
T ss_pred -------eEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCe---------EEEEEEcCCCCCCcccceEEEC
Confidence 233333344456777786 7789999999999999998876 3333332 34457789999
Q ss_pred ecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEee-cCCeEEEEecCC
Q 017553 299 CDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCC-EDGAIWRWDAIP 368 (369)
Q Consensus 299 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~vw~~~~ 368 (369)
|+++ .++++...++.|.+||..+++. +..+... . ...++|+|+|+++++++ .++.|.+||+.+
T Consensus 240 ~dg~-~l~~~~~~~~~v~~~d~~~~~~--~~~~~~~---~-~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~ 303 (353)
T 3vgz_A 240 TARQ-RAFITDSKAAEVLVVDTRNGNI--LAKVAAP---E-SLAVLFNPARNEAYVTHRQAGKVSVIDAKS 303 (353)
T ss_dssp TTTT-EEEEEESSSSEEEEEETTTCCE--EEEEECS---S-CCCEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred CCCC-EEEEEeCCCCEEEEEECCCCcE--EEEEEcC---C-CceEEECCCCCEEEEEECCCCeEEEEECCC
Confidence 9997 2444455669999999998853 4444421 1 25699999999665555 789999999864
No 150
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.91 E-value=2e-22 Score=185.07 Aligned_cols=280 Identities=10% Similarity=0.082 Sum_probs=183.7
Q ss_pred eEEEEEeeccCCCccEEEEecCCcEEEEEecCCcee-EEEeeeccC------------CcccceeEEEeeecCCCccEEE
Q 017553 36 LYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVI-AALQSYVDE------------DKEESFYTVSWACNVDGIPFLV 102 (369)
Q Consensus 36 v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~~~-~~~~~~~~~------------~~~~~v~~~~~~~~~~g~~~l~ 102 (369)
+..+.|. |+.+++++.++| +||+.+++.+ ..+..+... .+...+.+++|+ |+ . .++
T Consensus 28 ~~~~~w~------g~~~~~~~~~~i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~s--pd-~-~~~ 96 (706)
T 2z3z_A 28 VVGLQWM------GDNYVFIEGDDL-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDA--GR-G-LVV 96 (706)
T ss_dssp CTTCEEE------TTEEEEEETTEE-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEET--TT-T-EEE
T ss_pred CCCCcCc------CCeEEEEeCCcE-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEEC--CC-C-eEE
Confidence 4556776 234555666679 9999988873 333322100 011467888887 88 4 444
Q ss_pred EeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccC-----CcEEEEeeccCCCCCc-
Q 017553 103 AGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT-----GICILIFAGAGGHRNE- 176 (369)
Q Consensus 103 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~-----~~~~~~~~~~~~~~~~- 176 (369)
.+ .++.|++||+.+++... +..+...+.+++|+| +++.|+++ .|+.|++||+.+ ++...... .+...
T Consensus 97 ~~-~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~Sp-dG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~---~~~~~~ 169 (706)
T 2z3z_A 97 LF-TQGGLVGFDMLARKVTY-LFDTNEETASLDFSP-VGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTI---DGTETL 169 (706)
T ss_dssp EE-ETTEEEEEETTTTEEEE-EECCTTCCTTCEECT-TSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCS---CCBTTE
T ss_pred EE-ECCEEEEEECCCCceEE-ccCCcccccCCcCCC-CCCEEEEE-ECCeEEEEecCcccccCCCcEEecc---CCCCCe
Confidence 44 35999999998876543 444677889999999 88888885 679999999998 77655443 23222
Q ss_pred -------------EEEEEecCCCceEEEEEe---------------------------------eCCcEEEEEccCceee
Q 017553 177 -------------VLSVDFHPSDIYRIASCG---------------------------------MDNTVKIWSMKEFWTY 210 (369)
Q Consensus 177 -------------v~~~~~~~~~~~~l~~~~---------------------------------~d~~v~i~d~~~~~~~ 210 (369)
+.++.|+| +++.|++++ .+..|++||+.++...
T Consensus 170 ~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~ 248 (706)
T 2z3z_A 170 VYGQAVHQREFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTV 248 (706)
T ss_dssp EESSCCGGGCTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEE
T ss_pred EcccchhhhhcCCCceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceE
Confidence 47899999 888888887 3467899998874311
Q ss_pred eeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCC-----eEEEecCCCCCCCCCCCccceee
Q 017553 211 VEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDN-----EIVLWEPKMKEQSPGEGTADILQ 283 (369)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~~~~~~~ 283 (369)
.+.....|...+.++.|+ ++++++++.++ .|++||+.+++. ...+.
T Consensus 249 ---------------------~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~------~~~~~ 301 (706)
T 2z3z_A 249 ---------------------YLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRF------VRTLF 301 (706)
T ss_dssp ---------------------ECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCE------EEEEE
T ss_pred ---------------------eeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCce------eeEEE
Confidence 111112466788999997 77888887776 899999988731 00111
Q ss_pred eccC--CCCCeeEEEEee--cCCccEEEEecCCCeEEEEEcc-CCCceeEEEeecCCCccceEE-EEecCCCCEEEEeec
Q 017553 284 KYPV--PECDIWFIKFSC--DFHYNAAAIGNREGKIFVWELQ-SSPPVLIARLSHAQSKSPIRQ-TAMSYDGSTILSCCE 357 (369)
Q Consensus 284 ~~~~--~~~~i~~~~~s~--~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~s~~~ 357 (369)
.... ....+..++|+| +++ +++++..+|.+++|++. ++ .....+. .+...+.. ++|+|+|+.|+.++.
T Consensus 302 ~~~~~~~~~~~~~~~~sp~~dg~--~l~~~~~~g~~~l~~~~~~~--~~~~~l~--~~~~~v~~~~~~spdg~~l~~~~~ 375 (706)
T 2z3z_A 302 VETDKHYVEPLHPLTFLPGSNNQ--FIWQSRRDGWNHLYLYDTTG--RLIRQVT--KGEWEVTNFAGFDPKGTRLYFEST 375 (706)
T ss_dssp EEECSSCCCCCSCCEECTTCSSE--EEEEECTTSSCEEEEEETTS--CEEEECC--CSSSCEEEEEEECTTSSEEEEEES
T ss_pred EccCCCeECccCCceeecCCCCE--EEEEEccCCccEEEEEECCC--CEEEecC--CCCeEEEeeeEEcCCCCEEEEEec
Confidence 1111 111246789999 886 88888899999999887 33 3444554 55567776 899999987765554
Q ss_pred -CC----eEEEEecC
Q 017553 358 -DG----AIWRWDAI 367 (369)
Q Consensus 358 -dg----~i~vw~~~ 367 (369)
++ .|+.||+.
T Consensus 376 ~~~~~~~~l~~~d~~ 390 (706)
T 2z3z_A 376 EASPLERHFYCIDIK 390 (706)
T ss_dssp SSCTTCBEEEEEETT
T ss_pred CCCCceEEEEEEEcC
Confidence 44 56666654
No 151
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.91 E-value=1.9e-22 Score=165.28 Aligned_cols=236 Identities=9% Similarity=-0.078 Sum_probs=166.8
Q ss_pred ecccCCcCeEEEEEeeccCCCccEEEEecCCcEEEEEecC-CceeEEEeeeccCCcccceeEEEeeecCCCccEEEEee-
Q 017553 28 KLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLE-GGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG- 105 (369)
Q Consensus 28 ~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~- 105 (369)
.+..|...|.+++|+| +|++|++++.+.|.+||+.+ ++....... .+...+.+++|+ |+|+ +|++++
T Consensus 36 ~~~~~~~~v~~~~~sp----dg~~l~~~~~~~i~~~d~~~~~~~~~~~~~----~~~~~~~~~~~s--pdg~-~l~~~~~ 104 (297)
T 2ojh_A 36 VVWQTPELFEAPNWSP----DGKYLLLNSEGLLYRLSLAGDPSPEKVDTG----FATICNNDHGIS--PDGA-LYAISDK 104 (297)
T ss_dssp EEEEESSCCEEEEECT----TSSEEEEEETTEEEEEESSSCCSCEECCCT----TCCCBCSCCEEC--TTSS-EEEEEEC
T ss_pred eeccCCcceEeeEECC----CCCEEEEEcCCeEEEEeCCCCCCceEeccc----cccccccceEEC--CCCC-EEEEEEe
Confidence 3456889999999999 68999999877799999988 765544332 234667788888 9999 888877
Q ss_pred -cCCeEEEE--EcCCccccceeeccccceEEEEecCCCCceEE-EEeCCCcEEEEEccC-CcEEEEeeccCCCCCcEEEE
Q 017553 106 -INGIIRVI--DVSNEKLHKSFVGHGDSINEIRTQPLKPSLVV-SASKDESVRLWNVQT-GICILIFAGAGGHRNEVLSV 180 (369)
Q Consensus 106 -~dg~i~vw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~v~~~ 180 (369)
.++..++| ++.+++ ...+..+ ..+..++|+| +++.|+ +++.++.+++|++.. +.....+. .+...+.++
T Consensus 105 ~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~sp-dg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~ 178 (297)
T 2ojh_A 105 VEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSP-DGKSFTYCGIRDQVFDIYSMDIDSGVETRLT---HGEGRNDGP 178 (297)
T ss_dssp TTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECT-TSSEEEEEEEETTEEEEEEEETTTCCEEECC---CSSSCEEEE
T ss_pred CCCCcceEEEEECCCCc-eEEeecC-CCccceEECC-CCCEEEEEECCCCceEEEEEECCCCcceEcc---cCCCccccc
Confidence 33445555 544444 3444433 3488999999 666655 788899999999642 23334444 578899999
Q ss_pred EecCCCceEEEEEe-eCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEee
Q 017553 181 DFHPSDIYRIASCG-MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS 257 (369)
Q Consensus 181 ~~~~~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~ 257 (369)
+|+| ++..++.++ .++.+++|+++.. ......+..|...+.++.|+ +++|++++
T Consensus 179 ~~s~-dg~~l~~~~~~~~~~~i~~~~~~----------------------~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 235 (297)
T 2ojh_A 179 DYSP-DGRWIYFNSSRTGQMQIWRVRVD----------------------GSSVERITDSAYGDWFPHPSPSGDKVVFVS 235 (297)
T ss_dssp EECT-TSSEEEEEECTTSSCEEEEEETT----------------------SSCEEECCCCSEEEEEEEECTTSSEEEEEE
T ss_pred eECC-CCCEEEEEecCCCCccEEEECCC----------------------CCCcEEEecCCcccCCeEECCCCCEEEEEE
Confidence 9999 777666555 5899999998731 12234455566778888887 77888777
Q ss_pred cC-----------CeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCC
Q 017553 258 VD-----------NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE 312 (369)
Q Consensus 258 ~d-----------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~d 312 (369)
.+ +.|.+||+.+++. ..+..+..+...+..++|+|+++ .|++++.+
T Consensus 236 ~~~~~~~~~~~~~~~l~~~d~~~~~~-------~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~ 292 (297)
T 2ojh_A 236 YDADVFDHPRDLDVRVQLMDMDGGNV-------ETLFDLFGGQGTMNSPNWSPDGD--EFAYVRYF 292 (297)
T ss_dssp EETTCCSCCSSEEEEEEEEETTSCSC-------EEEEEEEESTTTSCSCCBCTTSS--EEEEEEEC
T ss_pred cCCCCCcccccCceEEEEEecCCCCc-------eeeeccCCCCcccccceECCCCC--EEEEEEec
Confidence 65 5699999987642 13444445667788999999997 56555443
No 152
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.91 E-value=6e-21 Score=159.04 Aligned_cols=258 Identities=10% Similarity=0.048 Sum_probs=168.8
Q ss_pred cceeeeeecccCCcCeEEEEEeeccCCCccEEEEecC-Cc-EEEEEecCCce-eEEEeeeccCCcccceeEEEeeecCCC
Q 017553 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGG-NR-VTVYQCLEGGV-IAALQSYVDEDKEESFYTVSWACNVDG 97 (369)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~-~~-v~iw~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~g 97 (369)
...+....+..+...+ +++|+| +|+++++++. ++ |.+||..+++. ...+.. +..+..+++|+ |+|
T Consensus 28 ~~~~~~~~~~~~~~~~-~~~~s~----dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-----~~~~~~~~~~s--~dg 95 (331)
T 3u4y_A 28 DTLEILNQITLGYDFV-DTAITS----DCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE-----GQSSMADVDIT--PDD 95 (331)
T ss_dssp TTCCEEEEEECCCCEE-EEEECS----SSCEEEEEESTTCEEEEEECSSSSCEEEEEEE-----CSSCCCCEEEC--TTS
T ss_pred cccceeeeEEccCCcc-eEEEcC----CCCEEEEEeCCCCeEEEEECCCCceeEEeccc-----CCCCccceEEC--CCC
Confidence 3344455555556666 999999 5775555544 44 99999988876 544442 33344447776 999
Q ss_pred ccEEEEeecCC---eEEEEEcCCccccceeeccccceEEEEecCCCCc-eEEEEeCCCc-EEEEEccCCcEEEEe-eccC
Q 017553 98 IPFLVAGGING---IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPS-LVVSASKDES-VRLWNVQTGICILIF-AGAG 171 (369)
Q Consensus 98 ~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~dg~-i~vwd~~~~~~~~~~-~~~~ 171 (369)
+ +|+++..++ .|.+||+.+++.+..+..+ ....+++|+| +++ ++++...++. |.+|++.....+... ....
T Consensus 96 ~-~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~sp-dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~ 172 (331)
T 3u4y_A 96 Q-FAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISP-NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFI 172 (331)
T ss_dssp S-EEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECT-TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEE
T ss_pred C-EEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECC-CCCEEEEEecCCCceEEEEEECCCCcEeecCCccc
Confidence 9 777665553 8999999999888777644 4568999999 666 5555566688 999998754433111 0000
Q ss_pred CCCCcEEEEEecCCCce-EEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee-
Q 017553 172 GHRNEVLSVDFHPSDIY-RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL- 249 (369)
Q Consensus 172 ~~~~~v~~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~- 249 (369)
.....+..++|+| +++ +++++..++.|++||+.+++.. ..+..+. ....+..++|+
T Consensus 173 ~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~d~~~~~~~--------------------~~~~~~~-~~~~~~~~~~sp 230 (331)
T 3u4y_A 173 SGGTRPFNITFTP-DGNFAFVANLIGNSIGILETQNPENI--------------------TLLNAVG-TNNLPGTIVVSR 230 (331)
T ss_dssp CSSSSEEEEEECT-TSSEEEEEETTTTEEEEEECSSTTSC--------------------EEEEEEE-CSSCCCCEEECT
T ss_pred cCCCCccceEECC-CCCEEEEEeCCCCeEEEEECCCCccc--------------------ceeeecc-CCCCCceEEECC
Confidence 2455689999999 666 5555667899999999874320 0022222 23556677886
Q ss_pred -CcEEEEe-ecCCeEEEecCCCCCCCCCCCccceeeeccC----CC---CCeeEEEEeecCCccEEEEecCCCeEEEEEc
Q 017553 250 -GDFILSK-SVDNEIVLWEPKMKEQSPGEGTADILQKYPV----PE---CDIWFIKFSCDFHYNAAAIGNREGKIFVWEL 320 (369)
Q Consensus 250 -~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~----~~---~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~ 320 (369)
+++++++ ..++.|.+||+.+++.. .+..+.. .. .....++|+|+++ .+++++..++.|.+||+
T Consensus 231 dg~~l~v~~~~~~~i~~~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~v~~~~~~~v~v~d~ 302 (331)
T 3u4y_A 231 DGSTVYVLTESTVDVFNFNQLSGTLS-------FVKSFGHGLLIDPRPLFGANQMALNKTET-KLFISANISRELKVFTI 302 (331)
T ss_dssp TSSEEEEECSSEEEEEEEETTTTEEE-------EEEEEECCCCCCCGGGTTCCCEEECTTSS-EEEEEETTTTEEEEEET
T ss_pred CCCEEEEEEcCCCEEEEEECCCCcee-------eecccccccccCCCCcccccceEECCCCC-EEEEecCCCCcEEEEEe
Confidence 6766554 45788999999876521 1111111 11 1225589999997 24455667789999999
Q ss_pred cCC
Q 017553 321 QSS 323 (369)
Q Consensus 321 ~~~ 323 (369)
...
T Consensus 303 ~~~ 305 (331)
T 3u4y_A 303 SGK 305 (331)
T ss_dssp TSC
T ss_pred cCC
Confidence 875
No 153
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.90 E-value=2.6e-20 Score=157.16 Aligned_cols=272 Identities=11% Similarity=0.070 Sum_probs=169.4
Q ss_pred cEEEEEec--CCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecC----CeEEEEEcCC--cc--ccceeeccc
Q 017553 59 RVTVYQCL--EGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN----GIIRVIDVSN--EK--LHKSFVGHG 128 (369)
Q Consensus 59 ~v~iw~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~d----g~i~vwd~~~--~~--~~~~~~~~~ 128 (369)
+|.+|.+. +++. ..+... +......++|+ |+|+ +|++++.+ +.|.+|++.. ++ .+.....+.
T Consensus 28 ~i~~~~~d~~~g~~-~~~~~~----~~~~p~~l~~s--pdg~-~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~ 99 (361)
T 3scy_A 28 GIYTFRFNEETGES-LPLSDA----EVANPSYLIPS--ADGK-FVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMG 99 (361)
T ss_dssp EEEEEEEETTTCCE-EEEEEE----ECSCCCSEEEC--TTSS-EEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSS
T ss_pred CEEEEEEeCCCCCE-EEeecc----cCCCCceEEEC--CCCC-EEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCC
Confidence 38998875 3433 233222 33445557777 9998 88888775 8999999865 33 233344455
Q ss_pred cceEEEEecCCCCceEEEE-eCCCcEEEEEccCCcEEEEe----ec-------cCCCCCcEEEEEecCCCceEE-EEEee
Q 017553 129 DSINEIRTQPLKPSLVVSA-SKDESVRLWNVQTGICILIF----AG-------AGGHRNEVLSVDFHPSDIYRI-ASCGM 195 (369)
Q Consensus 129 ~~v~~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~----~~-------~~~~~~~v~~~~~~~~~~~~l-~~~~~ 195 (369)
.....+++ +++.|+++ ..++.|.+|++.....+..+ .. ...+...+.+++|+| +++++ ++...
T Consensus 100 ~~p~~~~~---dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~ 175 (361)
T 3scy_A 100 ADPCYLTT---NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP-DGKYLLADDLG 175 (361)
T ss_dssp SCEEEEEE---CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT-TSSEEEEEETT
T ss_pred CCcEEEEE---CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC-CCCEEEEEeCC
Confidence 56777777 34555554 46889999999754332211 10 001233468899999 77655 45555
Q ss_pred CCcEEEEEccCcee------eeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEee-cCCeEEEec
Q 017553 196 DNTVKIWSMKEFWT------YVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS-VDNEIVLWE 266 (369)
Q Consensus 196 d~~v~i~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~-~d~~i~i~d 266 (369)
++.|.+|++..... .... .........+...+..++|+ ++++++++ .++.|.+|+
T Consensus 176 ~~~v~v~~~~~~~~~~~~~~l~~~----------------~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~ 239 (361)
T 3scy_A 176 TDQIHKFNINPNANADNKEKFLTK----------------GTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFR 239 (361)
T ss_dssp TTEEEEEEECTTCCTTTCCCCEEE----------------EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEE
T ss_pred CCEEEEEEEcCCCCcccccceeec----------------ccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEE
Confidence 88999999986321 0000 00011112234456778887 66776666 689999999
Q ss_pred CCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEec-C-CCeEEEEEcc--CCCceeEEEeecCCCccceEE
Q 017553 267 PKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN-R-EGKIFVWELQ--SSPPVLIARLSHAQSKSPIRQ 342 (369)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~-~-dg~i~i~d~~--~~~~~~~~~~~~~~~~~~v~~ 342 (369)
+.++... ....+.....+......++|+|+++ +|+++. . ++.|.+|++. +++...+..+. . ...+..
T Consensus 240 ~~~g~~~----~~~~~~~~~~~~~~~~~i~~spdg~--~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~--~-g~~~~~ 310 (361)
T 3scy_A 240 YADGMLD----EIQTVAADTVNAQGSGDIHLSPDGK--YLYASNRLKADGVAIFKVDETNGTLTKVGYQL--T-GIHPRN 310 (361)
T ss_dssp EETTEEE----EEEEEESCSSCCCCEEEEEECTTSS--EEEEEECSSSCEEEEEEECTTTCCEEEEEEEE--C-SSCCCE
T ss_pred ecCCceE----EeEEEecCCCCCCCcccEEECCCCC--EEEEECCCCCCEEEEEEEcCCCCcEEEeeEec--C-CCCCce
Confidence 9855310 0011222222334467899999997 554444 4 5899999996 45444455554 2 356789
Q ss_pred EEecCCCCEEEEee-cCCeEEEEecC
Q 017553 343 TAMSYDGSTILSCC-EDGAIWRWDAI 367 (369)
Q Consensus 343 ~~~s~~~~~l~s~~-~dg~i~vw~~~ 367 (369)
++|+|||++|++++ .++.|.+|++.
T Consensus 311 ~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 311 FIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp EEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred EEECCCCCEEEEEECCCCCEEEEEEE
Confidence 99999999888887 67899997664
No 154
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.90 E-value=3e-22 Score=184.31 Aligned_cols=284 Identities=11% Similarity=0.039 Sum_probs=185.5
Q ss_pred EEEEEeeccCCCccEEEEecCCcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeec---------C
Q 017553 37 YAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI---------N 107 (369)
Q Consensus 37 ~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~---------d 107 (369)
.+++|+| +|++++++.++.|++||+.+++....+..... ....+..++|+ |||+ +|+.++. +
T Consensus 19 ~~~~~s~----dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~S--pDg~-~la~~~~~~~~~~~s~~ 89 (719)
T 1z68_A 19 FFPNWIS----GQEYLHQSADNNIVLYNIETGQSYTILSNRTM--KSVNASNYGLS--PDRQ-FVYLESDYSKLWRYSYT 89 (719)
T ss_dssp CCCEESS----SSEEEEECTTSCEEEEESSSCCEEEEECHHHH--HTTTCSEEEEC--TTSS-EEEEEEEEEECSSSCEE
T ss_pred CccEECC----CCeEEEEcCCCCEEEEEcCCCcEEEEEccccc--cccceeeEEEC--CCCC-eEEEEecCceeEEeecc
Confidence 3789999 67777766544499999988887665542210 01137778887 9999 8887765 7
Q ss_pred CeEEEEEcCCcccc--ceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcE--------
Q 017553 108 GIIRVIDVSNEKLH--KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEV-------- 177 (369)
Q Consensus 108 g~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v-------- 177 (369)
+.|++||+.+++.+ ..+ ...+..++|+| +++.|+.+. ++.|++||+.+++....... ++...|
T Consensus 90 ~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SP-DG~~la~~~-~~~i~~~~~~~g~~~~l~~~--~~~~~v~~g~~~~v 162 (719)
T 1z68_A 90 ATYYIYDLSNGEFVRGNEL---PRPIQYLCWSP-VGSKLAYVY-QNNIYLKQRPGDPPFQITFN--GRENKIFNGIPDWV 162 (719)
T ss_dssp EEEEEEETTTTEECCSSCC---CSSBCCEEECS-STTCEEEEE-TTEEEEESSTTSCCEECCCC--CBTTTEEESSCCHH
T ss_pred eEEEEEECCCCccccceec---CcccccceECC-CCCEEEEEE-CCeEEEEeCCCCCcEEEecC--CCcCCeEcccccce
Confidence 89999999988763 223 25688999999 888888875 68999999998876543321 333323
Q ss_pred ---------EEEEecCCCceEEEEEeeCC----------------------------------cEEEEEccCceeeeeee
Q 017553 178 ---------LSVDFHPSDIYRIASCGMDN----------------------------------TVKIWSMKEFWTYVEKS 214 (369)
Q Consensus 178 ---------~~~~~~~~~~~~l~~~~~d~----------------------------------~v~i~d~~~~~~~~~~~ 214 (369)
.+++|+| +++.|++++.|. .|++||+.++.......
T Consensus 163 ~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~ 241 (719)
T 1z68_A 163 YEEEMLATKYALWWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQE 241 (719)
T ss_dssp HHHHTTCSSCCEEECT-TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEE
T ss_pred eeeecccCcccEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeE
Confidence 4899999 888898887663 66777777632100000
Q ss_pred eeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecC----CeEEEec----CCCCCCCCCCCccceeee
Q 017553 215 FTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVD----NEIVLWE----PKMKEQSPGEGTADILQK 284 (369)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d----~~i~i~d----~~~~~~~~~~~~~~~~~~ 284 (369)
......+..|...+..++|+ ++++++.... ..|.+|| +.+++. ...
T Consensus 242 ---------------~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~---------~~~ 297 (719)
T 1z68_A 242 ---------------VPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDC---------PKT 297 (719)
T ss_dssp ---------------CCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEEC---------CGG
T ss_pred ---------------ccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCce---------EEE
Confidence 00001234577888999997 4455553322 2488899 666542 111
Q ss_pred c----cCCCCCee-----EEEEeecCCccEEEEecCCC--eEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEE
Q 017553 285 Y----PVPECDIW-----FIKFSCDFHYNAAAIGNREG--KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTIL 353 (369)
Q Consensus 285 ~----~~~~~~i~-----~~~~s~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 353 (369)
. ..+...+. .++|+|+++..++++...+| .|.+||+.+++. ..+. .+...+..+.++ +++.|+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~---~~lt--~~~~~v~~~~~~-d~~~i~ 371 (719)
T 1z68_A 298 QEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA---IQIT--SGKWEAINIFRV-TQDSLF 371 (719)
T ss_dssp GEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC---EECS--CSSSCEEEEEEE-CSSEEE
T ss_pred EecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce---Eecc--cCceEEEEEEEE-eCCEEE
Confidence 2 23444454 78999999743333455555 577777777642 3343 344567777777 887777
Q ss_pred EeecC-----CeEEEEecC
Q 017553 354 SCCED-----GAIWRWDAI 367 (369)
Q Consensus 354 s~~~d-----g~i~vw~~~ 367 (369)
..+.+ +..++|.+.
T Consensus 372 ~~~~~~~~~~~~~~l~~~~ 390 (719)
T 1z68_A 372 YSSNEFEEYPGRRNIYRIS 390 (719)
T ss_dssp EEESCGGGCTTCBEEEEEE
T ss_pred EEEecCCCCCceEEEEEEe
Confidence 66654 788899864
No 155
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.90 E-value=4.5e-20 Score=154.78 Aligned_cols=257 Identities=11% Similarity=0.053 Sum_probs=163.7
Q ss_pred cCCcCeEEEEEeeccCCCccEEEEecC--Cc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEee-c
Q 017553 31 EGKRPLYAVVFNFIDSRYFNVFATVGG--NR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG-I 106 (369)
Q Consensus 31 ~h~~~v~~~~~s~~~~~~~~~la~~~~--~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~-~ 106 (369)
.+...+..++|+| +|++++++.. ++ |.+|++.++.. ..+.... .+...+..++|+ |+|+ +|++++ .
T Consensus 37 ~~~~~p~~~a~sp----dg~l~~~~~~~~~~~v~~~~~~~g~~-~~~~~~~--~~~~~p~~~a~s--pdg~-~l~~~~~~ 106 (347)
T 3hfq_A 37 AATQNPTYLALSA----KDCLYSVDKEDDEGGIAAWQIDGQTA-HKLNTVV--APGTPPAYVAVD--EARQ-LVYSANYH 106 (347)
T ss_dssp EECSCCCCEEECT----TCEEEEEEEETTEEEEEEEEEETTEE-EEEEEEE--EESCCCSEEEEE--TTTT-EEEEEETT
T ss_pred eccCCcceEEEcc----CCeEEEEEecCCCceEEEEEecCCcE-EEeeeee--cCCCCCEEEEEC--CCCC-EEEEEeCC
Confidence 4556788899999 5775444432 34 99999976653 2222211 244566678887 9999 777666 7
Q ss_pred CCeEEEEEcCC-c--cccceeec---------cccceEEEEecCCCCceEEEEeCCCcEEEEEcc-CCcEEEEeeccCCC
Q 017553 107 NGIIRVIDVSN-E--KLHKSFVG---------HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ-TGICILIFAGAGGH 173 (369)
Q Consensus 107 dg~i~vwd~~~-~--~~~~~~~~---------~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~ 173 (369)
++.|.+|++.. + +.+..+.. +...+.+++|+| +++++++...++.|++|++. +++...........
T Consensus 107 ~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~ 185 (347)
T 3hfq_A 107 KGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEA 185 (347)
T ss_dssp TTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCT
T ss_pred CCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCC
Confidence 89999999963 2 22333321 112488999999 66777777778999999998 55433221111123
Q ss_pred CCcEEEEEecCCCce-EEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccC------CCceeee
Q 017553 174 RNEVLSVDFHPSDIY-RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH------SNYVDCN 246 (369)
Q Consensus 174 ~~~v~~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~ 246 (369)
...+..++|+| +++ ++++...++.+.+|+++........ +...... ...+..+
T Consensus 186 g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~-------------------~~~~~~~~~~~~~~~~~~~i 245 (347)
T 3hfq_A 186 GFGPRHLVFSP-DGQYAFLAGELSSQIASLKYDTQTGAFTQ-------------------LGIVKTIPADYTAHNGAAAI 245 (347)
T ss_dssp TCCEEEEEECT-TSSEEEEEETTTTEEEEEEEETTTTEEEE-------------------EEEEESSCTTCCSCCEEEEE
T ss_pred CCCCceEEECC-CCCEEEEEeCCCCEEEEEEecCCCCceEE-------------------eeeeeecCCCCCCCCcceeE
Confidence 34678899999 766 4555667889999998851111100 1111111 1457778
Q ss_pred eee--CcEE-EEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEec-CCCeEEEEEc--
Q 017553 247 RWL--GDFI-LSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN-REGKIFVWEL-- 320 (369)
Q Consensus 247 ~~~--~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~-~dg~i~i~d~-- 320 (369)
+|+ |+++ ++...++.|.+|++.... ....+..+..+...+..++|+|+++ +|++++ .++.|.+|++
T Consensus 246 ~~spdG~~l~v~~~~~~~v~v~~~~~~g------~~~~~~~~~~~~~~~~~~~~spdg~--~l~v~~~~~~~v~v~~~d~ 317 (347)
T 3hfq_A 246 RLSHDGHFLYVSNRGYNTLAVFAVTADG------HLTLIQQISTEGDFPRDFDLDPTEA--FVVVVNQNTDNATLYARDL 317 (347)
T ss_dssp EECTTSCEEEEEEETTTEEEEEEECGGG------CEEEEEEEECSSSCCCEEEECTTSS--EEEEEETTTTEEEEEEECT
T ss_pred EECCCCCEEEEEeCCCCEEEEEEECCCC------cEEEeEEEecCCCCcCeEEECCCCC--EEEEEEcCCCcEEEEEEeC
Confidence 887 6666 555568999999987321 1224555555556678999999997 565554 5689999955
Q ss_pred cCCCce
Q 017553 321 QSSPPV 326 (369)
Q Consensus 321 ~~~~~~ 326 (369)
.+++..
T Consensus 318 ~tg~l~ 323 (347)
T 3hfq_A 318 TSGKLS 323 (347)
T ss_dssp TTCCEE
T ss_pred CCCeEE
Confidence 456443
No 156
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.90 E-value=4.2e-21 Score=163.63 Aligned_cols=287 Identities=11% Similarity=0.060 Sum_probs=184.2
Q ss_pred eeeecccCCcCeEE-----EEEeeccCCCccEEEEecC-Cc---EEEEEecCCceeEEEeeeccCCcccceeEEEeeecC
Q 017553 25 VTNKLQEGKRPLYA-----VVFNFIDSRYFNVFATVGG-NR---VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNV 95 (369)
Q Consensus 25 ~~~~~~~h~~~v~~-----~~~s~~~~~~~~~la~~~~-~~---v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 95 (369)
....+..|...... .+||| +|+.||.++. ++ |.+||+.+++...... .+...+....|+ |
T Consensus 22 ~~~~lt~~~~~~~~~~~~~~~~Sp----Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~-----~~~~~~~~~~~s--p 90 (388)
T 3pe7_A 22 QVTRLTPPDVTCHRNYFYQKCFTR----DGSKLLFGGAFDGPWNYYLLDLNTQVATQLTE-----GRGDNTFGGFLS--P 90 (388)
T ss_dssp EEEECSCTTSCEECCCTTSCCBCT----TSCEEEEEECTTSSCEEEEEETTTCEEEECCC-----SSCBCSSSCEEC--T
T ss_pred ceEEecCCcccccchhhcCccCCC----CCCEEEEEEcCCCCceEEEEeCCCCceEEeee-----CCCCCccceEEc--C
Confidence 34456667666665 88999 6888888776 55 8888987776554443 233344445676 9
Q ss_pred CCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEE--ecCCCCceEEEE----------------------eCCC
Q 017553 96 DGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIR--TQPLKPSLVVSA----------------------SKDE 151 (369)
Q Consensus 96 ~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~l~s~----------------------~~dg 151 (369)
||+ .|+.++.++.|++||+.+++....+..+...+.... ++| ++.+++.. ..+.
T Consensus 91 dg~-~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (388)
T 3pe7_A 91 DDD-ALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANS-DCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCC 168 (388)
T ss_dssp TSS-EEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECT-TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCE
T ss_pred CCC-EEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECC-CCCeeccccccCcccccccccchhhhhhccCCcc
Confidence 999 899988889999999999887666665555554444 478 77777642 2447
Q ss_pred cEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeC------CcEEEEEccCceeeeeeeeeccCCCCCCC
Q 017553 152 SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD------NTVKIWSMKEFWTYVEKSFTWTDLPSKFP 225 (369)
Q Consensus 152 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------~~v~i~d~~~~~~~~~~~~~~~~~~~~~~ 225 (369)
.|.+||+.+++...... +...+..++|+|.++..|+....+ ..|.++|.....
T Consensus 169 ~l~~~d~~~g~~~~l~~----~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~----------------- 227 (388)
T 3pe7_A 169 RLMRVDLKTGESTVILQ----ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN----------------- 227 (388)
T ss_dssp EEEEEETTTCCEEEEEE----ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC-----------------
T ss_pred eEEEEECCCCceEEeec----CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc-----------------
Confidence 89999999987655543 667789999999445556555543 367777776521
Q ss_pred CceeecceeeeccCC--Cceeeeeee--CcEEEEeec-CC----eEEEecCCCCCCCCCCCccceeeeccCCC---CCee
Q 017553 226 TKYVQFPVFIASVHS--NYVDCNRWL--GDFILSKSV-DN----EIVLWEPKMKEQSPGEGTADILQKYPVPE---CDIW 293 (369)
Q Consensus 226 ~~~~~~~~~~~~~~~--~~v~~~~~~--~~~l~~~~~-d~----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~---~~i~ 293 (369)
...+..+. ..+....|+ |+.|+..+. ++ .|++||+.+++. ..+..+.... ....
T Consensus 228 -------~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~-------~~l~~~~~~~~~~~~~~ 293 (388)
T 3pe7_A 228 -------MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN-------RQLTSMPACSHLMSNYD 293 (388)
T ss_dssp -------CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE-------EEEEEECCEEEEEECTT
T ss_pred -------eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCce-------EEEEcCCCceeeeecCC
Confidence 11222222 246667786 666654433 22 399999988752 1222222200 0112
Q ss_pred EEEEeecCCccEEEEe---------cCCCeEEEEEccCCCceeEEEeecCCCcc-----------ceEEEEecCCCCEEE
Q 017553 294 FIKFSCDFHYNAAAIG---------NREGKIFVWELQSSPPVLIARLSHAQSKS-----------PIRQTAMSYDGSTIL 353 (369)
Q Consensus 294 ~~~~s~~~~~~~l~~~---------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-----------~v~~~~~s~~~~~l~ 353 (369)
..+|+|+++ .|+.. ..+..|++||+.+++. ..+. .+.. .+..++|+|||+.|+
T Consensus 294 ~~~~spdg~--~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~---~~l~--~~~~~~~~~~~~~~~~~~~~~~spDg~~l~ 366 (388)
T 3pe7_A 294 GSLMVGDGS--DAPVDVQDDSGYKIENDPFLYVFNMKNGTQ---HRVA--RHDTSWKVFEGDRQVTHPHPSFTPDDKQIL 366 (388)
T ss_dssp SSEEEEEEC--CC------------CCCCEEEEEETTTTEE---EEEE--ECCCCCCCBTTBSSTTCCCCEECTTSSEEE
T ss_pred CCeEccCCC--cceeEeeeccccccCCCCEEEEEeccCCce---EEec--cccCcccccccccccCCCCccCCCCCCEEE
Confidence 247999997 34422 5567899999998743 2333 2222 477889999999887
Q ss_pred Eee-cCCeEEEEec
Q 017553 354 SCC-EDGAIWRWDA 366 (369)
Q Consensus 354 s~~-~dg~i~vw~~ 366 (369)
.++ .+|...||.+
T Consensus 367 ~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 367 FTSDVHGKPALYLA 380 (388)
T ss_dssp EEECTTSSCEEEEE
T ss_pred EEecCCCceeEEEE
Confidence 665 4666666654
No 157
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.89 E-value=1.1e-21 Score=176.21 Aligned_cols=231 Identities=11% Similarity=0.001 Sum_probs=162.9
Q ss_pred ccceeEEEeeecCCCccEEEEeec-CCeEEEEEcCCccccceeeccc-cceEEEEecCCCCceEEEEeC---CCcEEEEE
Q 017553 83 EESFYTVSWACNVDGIPFLVAGGI-NGIIRVIDVSNEKLHKSFVGHG-DSINEIRTQPLKPSLVVSASK---DESVRLWN 157 (369)
Q Consensus 83 ~~~v~~~~~~~~~~g~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~---dg~i~vwd 157 (369)
..+|++++++ |||+ .|+.++. ||+++||++.+++..+ +..|. ..+..++|+| + +++++++. +...++|.
T Consensus 21 ~~~~~~~~~~--~DG~-~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~sp-d-~~l~~~~~~~g~~~~~l~~ 94 (582)
T 3o4h_A 21 AVEKYSLQGV--VDGD-KLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGV-G-RVILVRDVSKGAEQHALFK 94 (582)
T ss_dssp HSCEEEEEEE--ETTT-EEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTC-S-EEEEEEECSTTSCCEEEEE
T ss_pred ccchheeecC--CCCC-eEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCC-C-eEEEEeccCCCCcceEEEE
Confidence 4578888888 9999 7877766 9999999986665544 44444 6899999999 6 77777765 45566766
Q ss_pred ccC--CcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceee
Q 017553 158 VQT--GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI 235 (369)
Q Consensus 158 ~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (369)
+.. ......+. ....+...+|+|++...+++.+.++.+.+||+.+++. ..
T Consensus 95 ~~~~~~g~~~~l~----~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~------------------------~~ 146 (582)
T 3o4h_A 95 VNTSRPGEEQRLE----AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGL------------------------RE 146 (582)
T ss_dssp EETTSTTCCEECT----TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEE------------------------EE
T ss_pred EeccCCCcccccc----CCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcE------------------------EE
Confidence 543 22222333 2223345677873334444445555666999987421 11
Q ss_pred eccCCCceeeeeee--CcEEEEeecC----CeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEe
Q 017553 236 ASVHSNYVDCNRWL--GDFILSKSVD----NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG 309 (369)
Q Consensus 236 ~~~~~~~v~~~~~~--~~~l~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~ 309 (369)
+..+.. .++.|+ |+++++++.+ +.|++||+.+++ ...+..+...+..++|||||+ .|+++
T Consensus 147 l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~----------~~~l~~~~~~~~~~~~SpDG~--~l~~~ 212 (582)
T 3o4h_A 147 LARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG----------LRVFDSGEGSFSSASISPGMK--VTAGL 212 (582)
T ss_dssp EEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC----------CEEECCSSCEEEEEEECTTSC--EEEEE
T ss_pred eecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC----------ceEeecCCCccccceECCCCC--EEEEc
Confidence 112222 556665 8999988877 789999998775 234455667789999999997 77788
Q ss_pred cCCC--eEEEEEccCCCceeEEEeecCCCccceEEEE--------ecCCCCEEEEeecCCeEEEEec
Q 017553 310 NREG--KIFVWELQSSPPVLIARLSHAQSKSPIRQTA--------MSYDGSTILSCCEDGAIWRWDA 366 (369)
Q Consensus 310 ~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~--------~s~~~~~l~s~~~dg~i~vw~~ 366 (369)
..++ .|++||+.+++.. .+. ++...+..+. |+|||.++++++.||.+++|++
T Consensus 213 ~~~~~~~i~~~d~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 213 ETAREARLVTVDPRDGSVE---DLE--LPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp ECSSCEEEEEECTTTCCEE---ECC--CSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred cCCCeeEEEEEcCCCCcEE---Ecc--CCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 8888 8999999988533 333 5556666677 9999999999999999999986
No 158
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.89 E-value=9.8e-21 Score=158.08 Aligned_cols=259 Identities=10% Similarity=0.087 Sum_probs=175.6
Q ss_pred ccceeeeeecc-cCCc-CeEEEEEeeccCCCccEE-EEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecC
Q 017553 20 KREYRVTNKLQ-EGKR-PLYAVVFNFIDSRYFNVF-ATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNV 95 (369)
Q Consensus 20 ~~~~~~~~~~~-~h~~-~v~~~~~s~~~~~~~~~l-a~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 95 (369)
....+....+. ++.. .+..++|+| +++.+ +++..++ |.+||+.+++.+..+.......+...+..++|+ |
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~s~----dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s--~ 91 (337)
T 1pby_B 18 TEKMAVDKVITIADAGPTPMVPMVAP----GGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALS--P 91 (337)
T ss_dssp TTTTEEEEEEECTTCTTCCCCEEECT----TSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEEC--T
T ss_pred CCCCcEEEEEEcCCCCCCccceEEcC----CCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEEC--C
Confidence 33345555554 2222 488999999 56554 5555555 999999888877666532110122245667777 9
Q ss_pred CCccEEEEee------------cCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcE
Q 017553 96 DGIPFLVAGG------------INGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC 163 (369)
Q Consensus 96 ~g~~~l~~~~------------~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 163 (369)
+|+ +|+++. .++.|.+||+.+++.+..+.. ...+.+++|+| +++.|+++ ++.|.+||+.+++.
T Consensus 92 dg~-~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~--~~~i~~~d~~~~~~ 166 (337)
T 1pby_B 92 DGK-TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYGL--GRDLHVMDPEAGTL 166 (337)
T ss_dssp TSS-EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEE--SSSEEEEETTTTEE
T ss_pred CCC-EEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECC-CCCEEEEe--CCeEEEEECCCCcE
Confidence 998 777765 579999999998887777764 45678899999 77777777 68999999999988
Q ss_pred EEEeeccCCCCCcEEEEEecCCCceEEEEEee-CC-----------------------cEEEEEccCceeeeeeeeeccC
Q 017553 164 ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM-DN-----------------------TVKIWSMKEFWTYVEKSFTWTD 219 (369)
Q Consensus 164 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~-----------------------~v~i~d~~~~~~~~~~~~~~~~ 219 (369)
+..+... .+..+ +.|+| ++..++..+. ++ .|.+||+.+++..
T Consensus 167 ~~~~~~~-~~~~~---~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~--------- 232 (337)
T 1pby_B 167 VEDKPIQ-SWEAE---TYAQP-DVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA--------- 232 (337)
T ss_dssp EEEECST-TTTTT---TBCCC-BCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE---------
T ss_pred eeeeecc-ccCCC---ceeCC-CccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce---------
Confidence 8777621 11122 37788 5554443332 22 4678888774321
Q ss_pred CCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEE
Q 017553 220 LPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKF 297 (369)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 297 (369)
......+...+.+++|+ +++++++ ++.|.+||+.+.+ .+..+... ..+.+++|
T Consensus 233 -------------~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~---------~~~~~~~~-~~~~~~~~ 287 (337)
T 1pby_B 233 -------------MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNA---------SIKRVPLP-HSYYSVNV 287 (337)
T ss_dssp -------------EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTE---------EEEEEECS-SCCCEEEE
T ss_pred -------------EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCc---------CcceecCC-CceeeEEE
Confidence 12233455567778887 6677777 7999999998765 33443332 45788999
Q ss_pred eecCCccEEEEecCCCeEEEEEccCCCceeEEEee
Q 017553 298 SCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLS 332 (369)
Q Consensus 298 s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 332 (369)
+|+++ +|++++.++.|.+||+.+++ .+..+.
T Consensus 288 s~dg~--~l~~~~~~~~i~v~d~~~~~--~~~~~~ 318 (337)
T 1pby_B 288 STDGS--TVWLGGALGDLAAYDAETLE--KKGQVD 318 (337)
T ss_dssp CTTSC--EEEEESBSSEEEEEETTTCC--EEEEEE
T ss_pred CCCCC--EEEEEcCCCcEEEEECcCCc--EEEEEE
Confidence 99997 67777889999999999885 344444
No 159
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.88 E-value=8.2e-20 Score=154.13 Aligned_cols=274 Identities=9% Similarity=-0.048 Sum_probs=170.4
Q ss_pred cEEEEEec--CCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcC-Cccccceeecc-ccceEEE
Q 017553 59 RVTVYQCL--EGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVS-NEKLHKSFVGH-GDSINEI 134 (369)
Q Consensus 59 ~v~iw~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~-~~~v~~~ 134 (369)
+|.+|++. +++ +..+..... .....+..++|+ |+|+ +|++++.+ .|.+|++. +++........ .+.+.++
T Consensus 15 ~i~~~~~d~~~g~-l~~~~~~~~-~~~~~~~~~a~s--pdg~-~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~ 88 (365)
T 1jof_A 15 AIFTVQFDDEKLT-CKLIKRTEI-PQDEPISWMTFD--HERK-NIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRAN 88 (365)
T ss_dssp EEEEEEEETTTTE-EEEEEEEEC-CTTCCCSEEEEC--TTSS-EEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGG
T ss_pred cEEEEEEECCCCC-EEEeeEEcc-CCCCCCcEEEEC--CCCC-EEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccE
Confidence 48887764 333 333322110 122345667777 9998 88888887 99999997 67654333211 1335668
Q ss_pred EecCCCCce--EEEEe-------------CCCcEEEEEcc-CCcEEEEeecc-CCCCCcEEEEEecCCCceEEEEEe-eC
Q 017553 135 RTQPLKPSL--VVSAS-------------KDESVRLWNVQ-TGICILIFAGA-GGHRNEVLSVDFHPSDIYRIASCG-MD 196 (369)
Q Consensus 135 ~~~~~~~~~--l~s~~-------------~dg~i~vwd~~-~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~-~d 196 (369)
+|+| +++. +++++ .++.+.+|++. +++....+... ..+...+.+++|+| ++++++++. .+
T Consensus 89 ~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~ 166 (365)
T 1jof_A 89 DADT-NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP-TETYLYSADLTA 166 (365)
T ss_dssp CTTS-CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTT
T ss_pred EECC-CCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC-CCCEEEEEcCCC
Confidence 9999 7773 45553 68999999997 46654433311 02456789999999 777776655 36
Q ss_pred CcEEEEEcc-CceeeeeeeeeccCCCCCCCCceeecceeeec--cCCCceeeeeee--CcEEEEeec-CCeEEEecCCC-
Q 017553 197 NTVKIWSMK-EFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS--VHSNYVDCNRWL--GDFILSKSV-DNEIVLWEPKM- 269 (369)
Q Consensus 197 ~~v~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~--~~~l~~~~~-d~~i~i~d~~~- 269 (369)
+.|++||+. +++.. .+.... .|...+..++|+ |+++++++. ++.|.+|++..
T Consensus 167 ~~v~~~~~~~~g~~~---------------------~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~ 225 (365)
T 1jof_A 167 NKLWTHRKLASGEVE---------------------LVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA 225 (365)
T ss_dssp TEEEEEEECTTSCEE---------------------EEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred CEEEEEEECCCCCEE---------------------EeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCC
Confidence 799999998 43211 111111 234567788887 667777665 78999997653
Q ss_pred -CCCCCCCCccceeeeccC----CCC------CeeEEE-EeecCCccEEEEecC-CC-----eEEEEEcc-CCCceeEEE
Q 017553 270 -KEQSPGEGTADILQKYPV----PEC------DIWFIK-FSCDFHYNAAAIGNR-EG-----KIFVWELQ-SSPPVLIAR 330 (369)
Q Consensus 270 -~~~~~~~~~~~~~~~~~~----~~~------~i~~~~-~s~~~~~~~l~~~~~-dg-----~i~i~d~~-~~~~~~~~~ 330 (369)
++... ....+..++. +.. .+..++ |+|+++ +|+++.. ++ .|.+|++. +++...+..
T Consensus 226 ~g~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~--~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~ 300 (365)
T 1jof_A 226 THMPVY---THHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGK--YMFASSRANKFELQGYIAGFKLRDCGSIEKQLF 300 (365)
T ss_dssp TCCEEE---EEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSS--EEEEEEEESSTTSCCEEEEEEECTTSCEEEEEE
T ss_pred CCcEEE---ccceEEcCCCCcCCcccccccccccccEEEECCCCC--EEEEECCCCCCCCCCeEEEEEECCCCCEEEeee
Confidence 32100 0001112211 111 477899 999997 5555443 22 89999996 454322221
Q ss_pred -eecCCCccceEEEEecC---CCCEEEEeecC-CeEEEEecCC
Q 017553 331 -LSHAQSKSPIRQTAMSY---DGSTILSCCED-GAIWRWDAIP 368 (369)
Q Consensus 331 -~~~~~~~~~v~~~~~s~---~~~~l~s~~~d-g~i~vw~~~~ 368 (369)
.. .+...+..++|+| ||++|++++.+ +.|.+|++..
T Consensus 301 ~~~--~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 301 LSP--TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp EEE--CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred eee--cCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence 22 2334566789999 89999998864 8999999864
No 160
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.88 E-value=1.1e-18 Score=147.27 Aligned_cols=271 Identities=9% Similarity=0.018 Sum_probs=168.1
Q ss_pred CCcCeEEEEEeeccCCCccEEEEecCC-----cEEEEEecCC-ceeEEEeeeccCCcccceeEEEeeecCCCccEEEEe-
Q 017553 32 GKRPLYAVVFNFIDSRYFNVFATVGGN-----RVTVYQCLEG-GVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG- 104 (369)
Q Consensus 32 h~~~v~~~~~s~~~~~~~~~la~~~~~-----~v~iw~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~- 104 (369)
+...+..++|+| +|++|++++.+ .|.+|++... ..+..+.... .+......+++ +|+ +|+++
T Consensus 48 ~~~~p~~l~~sp----dg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~--~~~~~p~~~~~----dg~-~l~~~~ 116 (361)
T 3scy_A 48 EVANPSYLIPSA----DGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQK--TMGADPCYLTT----NGK-NIVTAN 116 (361)
T ss_dssp ECSCCCSEEECT----TSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEE--CSSSCEEEEEE----CSS-EEEEEE
T ss_pred cCCCCceEEECC----CCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEec--cCCCCcEEEEE----CCC-EEEEEE
Confidence 667788899999 68888888874 4999998763 3333333221 12233344443 677 55555
Q ss_pred ecCCeEEEEEcCCccccceee---c-----------cccceEEEEecCCCCceEE-EEeCCCcEEEEEccCCcE------
Q 017553 105 GINGIIRVIDVSNEKLHKSFV---G-----------HGDSINEIRTQPLKPSLVV-SASKDESVRLWNVQTGIC------ 163 (369)
Q Consensus 105 ~~dg~i~vwd~~~~~~~~~~~---~-----------~~~~v~~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~------ 163 (369)
..++.|.+|++.....+..+. . +...+.+++|+| +++.++ +...++.|++|++.....
T Consensus 117 ~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~ 195 (361)
T 3scy_A 117 YSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP-DGKYLLADDLGTDQIHKFNINPNANADNKEK 195 (361)
T ss_dssp TTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTCCTTTCCC
T ss_pred CCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC-CCCEEEEEeCCCCEEEEEEEcCCCCcccccc
Confidence 468999999997543332221 1 122357899999 777554 444588999999875431
Q ss_pred E------EEeeccCCCCCcEEEEEecCCCceEEEEEe-eCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeee
Q 017553 164 I------LIFAGAGGHRNEVLSVDFHPSDIYRIASCG-MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA 236 (369)
Q Consensus 164 ~------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (369)
+ ..... .+...+..++|+| +++++++++ .++.|.+|++.++...... .+...
T Consensus 196 l~~~~~~~~~~~--~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~g~~~~~~------------------~~~~~ 254 (361)
T 3scy_A 196 FLTKGTPEAFKV--APGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYADGMLDEIQ------------------TVAAD 254 (361)
T ss_dssp CEEEEEEEEEEC--CTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEETTEEEEEE------------------EEESC
T ss_pred eeecccccceec--CCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecCCceEEeE------------------EEecC
Confidence 1 11121 3456678999999 777666665 6899999999864321111 11122
Q ss_pred ccCCCceeeeeee--CcEEEEeecC--CeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEec-C
Q 017553 237 SVHSNYVDCNRWL--GDFILSKSVD--NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN-R 311 (369)
Q Consensus 237 ~~~~~~v~~~~~~--~~~l~~~~~d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~-~ 311 (369)
..+......++|+ +++|+++..+ +.|.+|++..... ....+..+.. ...+..++|+|+++ +|++++ .
T Consensus 255 ~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g-----~~~~~~~~~~-g~~~~~~~~spdg~--~l~~~~~~ 326 (361)
T 3scy_A 255 TVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNG-----TLTKVGYQLT-GIHPRNFIITPNGK--YLLVACRD 326 (361)
T ss_dssp SSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTC-----CEEEEEEEEC-SSCCCEEEECTTSC--EEEEEETT
T ss_pred CCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCC-----cEEEeeEecC-CCCCceEEECCCCC--EEEEEECC
Confidence 2233445678886 7777666654 8999999863211 1113333433 45678899999997 565555 7
Q ss_pred CCeEEEEEcc--CCCceeEEEeecCCCccceEEEEec
Q 017553 312 EGKIFVWELQ--SSPPVLIARLSHAQSKSPIRQTAMS 346 (369)
Q Consensus 312 dg~i~i~d~~--~~~~~~~~~~~~~~~~~~v~~~~~s 346 (369)
++.|.+|++. +++ .. .+....+...+.|+.|.
T Consensus 327 ~~~v~v~~~d~~~g~--~~-~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 327 TNVIQIFERDQATGL--LT-DIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp TTEEEEEEECTTTCC--EE-ECSCCEECSSEEEEEEE
T ss_pred CCCEEEEEEECCCCc--Ee-ecceeeeCCCCeEEEEc
Confidence 7999997665 443 22 22211233568888886
No 161
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.87 E-value=1.6e-20 Score=172.87 Aligned_cols=283 Identities=10% Similarity=0.068 Sum_probs=179.2
Q ss_pred CcCeEEEEEeeccCCCccEEEEecCCcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecC-----
Q 017553 33 KRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN----- 107 (369)
Q Consensus 33 ~~~v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~d----- 107 (369)
.....+++|+| +|++++++ ++.|++||+.+++....+..+...........++|+ |||+ .|+.++.+
T Consensus 16 ~~~~~~~~w~~----dg~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S--pdg~-~l~~~~~~~~~~r 87 (740)
T 4a5s_A 16 RLKLYSLRWIS----DHEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSIS--PDGQ-FILLEYNYVKQWR 87 (740)
T ss_dssp CCCCCCEEECS----SSEEEEEE-TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEEC--TTSS-EEEEEEEEEECSS
T ss_pred cccccccEECC----CCcEEEEc-CCcEEEEECCCCceEEEEechhhhhhcccccceEEC--CCCC-EEEEEECCeeeEE
Confidence 34567899999 68899987 444999999999876666543221111122234555 9999 88887765
Q ss_pred ----CeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcE------
Q 017553 108 ----GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEV------ 177 (369)
Q Consensus 108 ----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v------ 177 (369)
+.+.+||+.+++.. .+..|...+...+|+| +++.|+.+. |+.|++|++.+++..+.... ++...+
T Consensus 88 ~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SP-dG~~la~~~-~~~i~~~~~~~~~~~~lt~~--g~~~~~~~g~~~ 162 (740)
T 4a5s_A 88 HSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSP-VGHKLAYVW-NNDIYVKIEPNLPSYRITWT--GKEDIIYNGITD 162 (740)
T ss_dssp SCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECS-STTCEEEEE-TTEEEEESSTTSCCEECCSC--CBTTTEEESBCC
T ss_pred EccceEEEEEECCCCcEE-EcccCCCcceeeEECC-CCCEEEEEE-CCeEEEEECCCCceEEEcCC--CCccceecCccc
Confidence 66789999988754 4566778899999999 888888874 68999999988875543221 232222
Q ss_pred -----------EEEEecCCCceEEEEEeeCCc-EEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceee
Q 017553 178 -----------LSVDFHPSDIYRIASCGMDNT-VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDC 245 (369)
Q Consensus 178 -----------~~~~~~~~~~~~l~~~~~d~~-v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 245 (369)
..+.|+| +++.|+.++.|.+ +.+|++...... ..+...+..
T Consensus 163 ~v~~ee~~~~~~~~~wSp-Dg~~la~~~~d~~~v~~~~~~~~~~~--------------------------~~~~~~~~~ 215 (740)
T 4a5s_A 163 WVYEEEVFSAYSALWWSP-NGTFLAYAQFNDTEVPLIEYSFYSDE--------------------------SLQYPKTVR 215 (740)
T ss_dssp HHHHHHTSSSSBCEEECT-TSSEEEEEEEECTTCCEEEEEECCST--------------------------TCSSCEEEE
T ss_pred ccccchhcCCCcceEECC-CCCEEEEEEEcccCCceEEEEeecCC--------------------------CCCCCccee
Confidence 3489999 8888888776654 888887541100 012222223
Q ss_pred eeee--CcEEEEeecCCeEEEecCCC---CCCCCCCCccceeeecc------CCCCCeeEEEEeecCCccEEEEe----c
Q 017553 246 NRWL--GDFILSKSVDNEIVLWEPKM---KEQSPGEGTADILQKYP------VPECDIWFIKFSCDFHYNAAAIG----N 310 (369)
Q Consensus 246 ~~~~--~~~l~~~~~d~~i~i~d~~~---~~~~~~~~~~~~~~~~~------~~~~~i~~~~~s~~~~~~~l~~~----~ 310 (369)
+.|. |.. .....|++||+.+ ++... . ..+. .+...+..++|+||++ .++.. .
T Consensus 216 ~~yp~~G~~----~~~~~l~v~d~~~~~~~~~~~------~-~~l~~~~~~~~~~~~~~~~~wspdg~--~~~~~~~r~~ 282 (740)
T 4a5s_A 216 VPYPKAGAV----NPTVKFFVVNTDSLSSVTNAT------S-IQITAPASMLIGDHYLCDVTWATQER--ISLQWLRRIQ 282 (740)
T ss_dssp EECCBTTSC----CCEEEEEEEETTSCCSSSCCC------E-EEECCCHHHHTSCEEEEEEEEEETTE--EEEEEEESST
T ss_pred ecCCCCcCc----CCeeEEEEEECCCCCCCCcce------E-EEecCCccCCCCCeEEEEEEEeCCCe--EEEEEeCCCC
Confidence 3332 211 1122689999988 52100 1 1111 2556788999999996 44433 2
Q ss_pred CCCeEEEEEccCCC----ceeEEEeecCCCccceE-----EEEecCCCCEEE-Eee-cCC--eEEEEecCC
Q 017553 311 REGKIFVWELQSSP----PVLIARLSHAQSKSPIR-----QTAMSYDGSTIL-SCC-EDG--AIWRWDAIP 368 (369)
Q Consensus 311 ~dg~i~i~d~~~~~----~~~~~~~~~~~~~~~v~-----~~~~s~~~~~l~-s~~-~dg--~i~vw~~~~ 368 (369)
.+..|.+||+.+++ ......+....+...|. ...|+|||+.|+ ..+ .+| .|++|++..
T Consensus 283 ~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~ 353 (740)
T 4a5s_A 283 NYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDK 353 (740)
T ss_dssp TEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTC
T ss_pred CEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCC
Confidence 34579999999986 11111110013333333 688999999877 565 344 577787653
No 162
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.87 E-value=1.8e-20 Score=172.48 Aligned_cols=282 Identities=8% Similarity=-0.002 Sum_probs=180.5
Q ss_pred CeEEEEEeeccCCCccEEEEecC---------Cc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEe
Q 017553 35 PLYAVVFNFIDSRYFNVFATVGG---------NR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG 104 (369)
Q Consensus 35 ~v~~~~~s~~~~~~~~~la~~~~---------~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~ 104 (369)
.|.+++||| ||++||+++. ++ |++||+.+++.+...+ ....+..++|+ |||+ .|+.+
T Consensus 61 ~~~~~~~Sp----Dg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~------l~~~~~~~~~S--PDG~-~la~~ 127 (719)
T 1z68_A 61 NASNYGLSP----DRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE------LPRPIQYLCWS--PVGS-KLAYV 127 (719)
T ss_dssp TCSEEEECT----TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC------CCSSBCCEEEC--SSTT-CEEEE
T ss_pred ceeeEEECC----CCCeEEEEecCceeEEeecceEEEEEECCCCcccccee------cCcccccceEC--CCCC-EEEEE
Confidence 489999999 6999998876 45 9999988876521111 12356678887 9999 77777
Q ss_pred ecCCeEEEEEcCCcccccee-eccccce-----------------EEEEecCCCCceEEEEeCCC---------------
Q 017553 105 GINGIIRVIDVSNEKLHKSF-VGHGDSI-----------------NEIRTQPLKPSLVVSASKDE--------------- 151 (369)
Q Consensus 105 ~~dg~i~vwd~~~~~~~~~~-~~~~~~v-----------------~~~~~~~~~~~~l~s~~~dg--------------- 151 (369)
. ++.|++|++.+++..+.. .++...| .+++|+| +++.|++++.|.
T Consensus 128 ~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~ 205 (719)
T 1z68_A 128 Y-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQ 205 (719)
T ss_dssp E-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEEEEEECTTSCEEEEEECCSSS
T ss_pred E-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC-CCCEEEEEEECCCCCceEEeeccCCCC
Confidence 5 789999999887654322 2222222 4899999 889999887652
Q ss_pred -------------------cEEEEEccCCcEE--EEee---ccCCCCCcEEEEEecCCCceEEEEEeeCC----cEEEEE
Q 017553 152 -------------------SVRLWNVQTGICI--LIFA---GAGGHRNEVLSVDFHPSDIYRIASCGMDN----TVKIWS 203 (369)
Q Consensus 152 -------------------~i~vwd~~~~~~~--~~~~---~~~~~~~~v~~~~~~~~~~~~l~~~~~d~----~v~i~d 203 (369)
.|++||+.+++.. ..+. ...+|...+..++|+| +++++++....+ .|.+||
T Consensus 206 ~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d 284 (719)
T 1z68_A 206 YPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICD 284 (719)
T ss_dssp SCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEE
T ss_pred CccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEc
Confidence 7889999887642 1221 1125788899999999 677777754332 488888
Q ss_pred ----ccCceeeeeeeeeccCCCCCCCCceeecceeee----ccCCCcee-----eeeee--CcEEEE--eecCC--eEEE
Q 017553 204 ----MKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA----SVHSNYVD-----CNRWL--GDFILS--KSVDN--EIVL 264 (369)
Q Consensus 204 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~-----~~~~~--~~~l~~--~~~d~--~i~i 264 (369)
+.+++. .... ..|...+. .+.|+ |+.++. ...++ .|.+
T Consensus 285 ~~~~~~~g~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~ 341 (719)
T 1z68_A 285 FREDWQTWDC-----------------------PKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHY 341 (719)
T ss_dssp ECSSSSSEEC-----------------------CGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEE
T ss_pred ccCCCCCCce-----------------------EEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEE
Confidence 655321 1111 24555555 66776 664443 44555 4777
Q ss_pred ecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecC----CCeEEEEEccC--CCceeEEEee--cCCC
Q 017553 265 WEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR----EGKIFVWELQS--SPPVLIARLS--HAQS 336 (369)
Q Consensus 265 ~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~----dg~i~i~d~~~--~~~~~~~~~~--~~~~ 336 (369)
||+.+++ ...+..+...+..+.++ +++ .+++++.. ++..++|.+.. +.. ....+. ..++
T Consensus 342 ~~~~~~~----------~~~lt~~~~~v~~~~~~-d~~-~i~~~~~~~~~~~~~~~l~~~~~~~g~~-~~~~l~~~~~~~ 408 (719)
T 1z68_A 342 IKDTVEN----------AIQITSGKWEAINIFRV-TQD-SLFYSSNEFEEYPGRRNIYRISIGSYPP-SKKCVTCHLRKE 408 (719)
T ss_dssp ESSCSTT----------CEECSCSSSCEEEEEEE-CSS-EEEEEESCGGGCTTCBEEEEEECSSSSC-CEEESSTTTTTT
T ss_pred EECCCCc----------eEecccCceEEEEEEEE-eCC-EEEEEEecCCCCCceEEEEEEeCCCCCC-CceeccCccCCC
Confidence 7876553 22333334456677777 665 34445544 58889998865 311 123333 1125
Q ss_pred ccceEEEEecCCCCEEEE-eecC--CeEEEEecCC
Q 017553 337 KSPIRQTAMSYDGSTILS-CCED--GAIWRWDAIP 368 (369)
Q Consensus 337 ~~~v~~~~~s~~~~~l~s-~~~d--g~i~vw~~~~ 368 (369)
...+..+.|+|++++++. ++.+ ..+++||+.+
T Consensus 409 ~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~ 443 (719)
T 1z68_A 409 RCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRT 443 (719)
T ss_dssp TBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSS
T ss_pred CCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCC
Confidence 567888999999987764 3333 4678888753
No 163
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.86 E-value=2.7e-18 Score=144.84 Aligned_cols=253 Identities=13% Similarity=0.089 Sum_probs=162.3
Q ss_pred CCcCeEEEEEeeccCCCccEEEEecCCcEEEEEec-CCceeEEEeeeccCCcccceeEEEeeecCCCcc-EEEEee----
Q 017553 32 GKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCL-EGGVIAALQSYVDEDKEESFYTVSWACNVDGIP-FLVAGG---- 105 (369)
Q Consensus 32 h~~~v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~-~l~~~~---- 105 (369)
....+..++|+| +|++|++++.+.|.+|++. +++...... +.. . +....++|+ |+|+. +++++.
T Consensus 38 ~~~~~~~~a~sp----dg~~l~~~~~~~v~~~~~~~~g~~~~~~~-~~~--~-g~~~~~~~s--pdg~~l~~~~~~~~~~ 107 (365)
T 1jof_A 38 QDEPISWMTFDH----ERKNIYGAAMKKWSSFAVKSPTEIVHEAS-HPI--G-GHPRANDAD--TNTRAIFLLAAKQPPY 107 (365)
T ss_dssp TTCCCSEEEECT----TSSEEEEEEBTEEEEEEEEETTEEEEEEE-EEC--C-SSGGGGCTT--SCCEEEEEEECSSTTC
T ss_pred CCCCCcEEEECC----CCCEEEEEccceEEEEEECCCCCEEEeeE-eec--C-CCCccEEEC--CCCCEEEEEEecCCcc
Confidence 445688999999 6888888887789999987 665543322 110 1 123335555 99983 244543
Q ss_pred ---------cCCeEEEEEcC-Cccccceee----ccccceEEEEecCCCCceEEEEe-CCCcEEEEEcc-CCcEEE--Ee
Q 017553 106 ---------INGIIRVIDVS-NEKLHKSFV----GHGDSINEIRTQPLKPSLVVSAS-KDESVRLWNVQ-TGICIL--IF 167 (369)
Q Consensus 106 ---------~dg~i~vwd~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~vwd~~-~~~~~~--~~ 167 (369)
.+|.+.+|++. +++....+. .+...+.+++|+| ++++|+++. .++.|++||+. +++... .+
T Consensus 108 ~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~ 186 (365)
T 1jof_A 108 AVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVELVGSV 186 (365)
T ss_dssp CEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEE
T ss_pred eeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC-CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeE
Confidence 68999999997 455544333 2456789999999 788777665 46799999998 676532 22
Q ss_pred eccCCCCCcEEEEEecCCCceEEEEEee-CCcEEEEEccC--ceeeeeeeeeccCCCCCCCCceeecceeee----ccCC
Q 017553 168 AGAGGHRNEVLSVDFHPSDIYRIASCGM-DNTVKIWSMKE--FWTYVEKSFTWTDLPSKFPTKYVQFPVFIA----SVHS 240 (369)
Q Consensus 168 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~~v~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 240 (369)
.. ..|...+..++|+| +++++++++. ++.|.+|+++. +...... ..+..+ .+|.
T Consensus 187 ~~-~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~-----------------~~~~~~~~~~~g~~ 247 (365)
T 1jof_A 187 DA-PDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDPATHMPVYTH-----------------HSFPLIPPGIPDRD 247 (365)
T ss_dssp EC-SSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEE-----------------EEEESSCTTCCCBC
T ss_pred ec-CCCCCCCCEeEECC-CCCEEEEEECCCCeEEEEEEeCCCCcEEEcc-----------------ceEEcCCCCcCCcc
Confidence 21 02356789999999 7777776664 68999998763 2211000 001111 1122
Q ss_pred C------ceeeee-ee--CcEEEEeecC-C-----eEEEecCC-CCCCCCCCCccceee-eccCCCCCeeEEEEee---c
Q 017553 241 N------YVDCNR-WL--GDFILSKSVD-N-----EIVLWEPK-MKEQSPGEGTADILQ-KYPVPECDIWFIKFSC---D 300 (369)
Q Consensus 241 ~------~v~~~~-~~--~~~l~~~~~d-~-----~i~i~d~~-~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~s~---~ 300 (369)
. .+..++ |+ |++|+++..+ + .|.+|++. +++. ..+. ....+......++|+| +
T Consensus 248 ~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~-------~~~~~~~~~~~~~~~~~a~sp~~~d 320 (365)
T 1jof_A 248 PETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSI-------EKQLFLSPTPTSGGHSNAVSPCPWS 320 (365)
T ss_dssp TTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCE-------EEEEEEEECSSCCTTCCCEEECTTC
T ss_pred cccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCE-------EEeeeeeecCCCCcccceecCCCcC
Confidence 2 467788 76 7777766543 3 89999986 3321 1111 1223344567889999 7
Q ss_pred CCccEEEEecC-CCeEEEEEccCC
Q 017553 301 FHYNAAAIGNR-EGKIFVWELQSS 323 (369)
Q Consensus 301 ~~~~~l~~~~~-dg~i~i~d~~~~ 323 (369)
++ +|++++. ++.|.+|++...
T Consensus 321 g~--~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 321 DE--WMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TT--EEEEECSSSCEEEEEEEETT
T ss_pred CC--EEEEEEcCCCeEEEEEEchh
Confidence 86 6777665 599999999876
No 164
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.85 E-value=1.5e-19 Score=154.37 Aligned_cols=276 Identities=12% Similarity=0.033 Sum_probs=171.7
Q ss_pred eEEEEEeeccCCCccEEEEecCC----cEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEE
Q 017553 36 LYAVVFNFIDSRYFNVFATVGGN----RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIR 111 (369)
Q Consensus 36 v~~~~~s~~~~~~~~~la~~~~~----~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~ 111 (369)
+.+++|+| +|+.|+..... .|.+|++.+++...... ..........|+ |+|+ .|+.++.++.|+
T Consensus 38 ~~~~~~Sp----dG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~-----~~~~~~~~~~~s--pdg~-~l~~~~~~~~l~ 105 (396)
T 3c5m_A 38 FYQKCFTQ----DGKKLLFAGDFDGNRNYYLLNLETQQAVQLTE-----GKGDNTFGGFIS--TDER-AFFYVKNELNLM 105 (396)
T ss_dssp TTSCCBCT----TSCEEEEEECTTSSCEEEEEETTTTEEEECCC-----SSCBCTTTCEEC--TTSS-EEEEEETTTEEE
T ss_pred eecCcCCC----CCCEEEEEEecCCCceEEEEECCCCcEEEeec-----CCCCccccceEC--CCCC-EEEEEEcCCcEE
Confidence 78899999 68887776543 38888977765433222 122222235666 9999 888888888999
Q ss_pred EEEcCCccccceeeccccceEE-------------------EEecCCCCceEEEE-----eCCCcEEEEEccCCcEEEEe
Q 017553 112 VIDVSNEKLHKSFVGHGDSINE-------------------IRTQPLKPSLVVSA-----SKDESVRLWNVQTGICILIF 167 (369)
Q Consensus 112 vwd~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~~l~s~-----~~dg~i~vwd~~~~~~~~~~ 167 (369)
+||+.+++.......+...... +.|+| +++.++.. ..+..|.+||+.+++.....
T Consensus 106 ~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~ 184 (396)
T 3c5m_A 106 KVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQP-LTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH 184 (396)
T ss_dssp EEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCC-CCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE
T ss_pred EEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCC-CCcceeeeeeccCCCcceEEEEECCCCcEEeec
Confidence 9999887765544434333222 45677 66655543 45678999999988766555
Q ss_pred eccCCCCCcEEEEEecCCCceEEEEEeeC------CcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccC--
Q 017553 168 AGAGGHRNEVLSVDFHPSDIYRIASCGMD------NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH-- 239 (369)
Q Consensus 168 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 239 (369)
. +...+..+.|+|.++..|+..+.+ ..|.+||+.... ...+..+
T Consensus 185 ~----~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~------------------------~~~l~~~~~ 236 (396)
T 3c5m_A 185 Q----DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN------------------------VRKIKEHAE 236 (396)
T ss_dssp E----ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC------------------------CEESSCCCT
T ss_pred c----CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc------------------------eeEeeccCC
Confidence 3 667889999998445555555433 358888876521 1111112
Q ss_pred CCceeeeeee--CcEEEEeecC-----CeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEee-cCCccEEEEec-
Q 017553 240 SNYVDCNRWL--GDFILSKSVD-----NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSC-DFHYNAAAIGN- 310 (369)
Q Consensus 240 ~~~v~~~~~~--~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~~~l~~~~- 310 (369)
...+..+.|+ +++|+.++.+ +.|++||+.+++. ..+.... ... +.|+| +++ ++++++
T Consensus 237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~-------~~l~~~~----~~~-~~~s~~dg~--~l~~~~~ 302 (396)
T 3c5m_A 237 GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN-------EEVMVMP----PCS-HLMSNFDGS--LMVGDGC 302 (396)
T ss_dssp TEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCE-------EEEEECC----SEE-EEEECSSSS--EEEEEEC
T ss_pred CccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCe-------EEeeeCC----CCC-CCccCCCCc--eEEEecC
Confidence 2246667776 6767666544 4599999987642 1122222 122 88999 987 555433
Q ss_pred ---------------CCCeEEEEEccCCCceeEEEeecCC------CccceEEEEecCCCCEEEEeec-CCeEEEEec
Q 017553 311 ---------------REGKIFVWELQSSPPVLIARLSHAQ------SKSPIRQTAMSYDGSTILSCCE-DGAIWRWDA 366 (369)
Q Consensus 311 ---------------~dg~i~i~d~~~~~~~~~~~~~~~~------~~~~v~~~~~s~~~~~l~s~~~-dg~i~vw~~ 366 (369)
.++.|++||+.+++...+....... ....+..+.|+|||+.|+.++. ++...||.+
T Consensus 303 ~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 303 DAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp CC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred CcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 3478999999887543332211000 0002566889999998887764 455555543
No 165
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.85 E-value=1.2e-18 Score=159.00 Aligned_cols=288 Identities=10% Similarity=0.000 Sum_probs=182.3
Q ss_pred ecccCCcCeEEEEEeeccCCCccEEEEe--cCCc-EEEEEecCCceeEEEeeeccCCccccee---------EEEeeecC
Q 017553 28 KLQEGKRPLYAVVFNFIDSRYFNVFATV--GGNR-VTVYQCLEGGVIAALQSYVDEDKEESFY---------TVSWACNV 95 (369)
Q Consensus 28 ~~~~h~~~v~~~~~s~~~~~~~~~la~~--~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~---------~~~~~~~~ 95 (369)
.+.+|...|..++|++ ++-++++. +.++ ..||....+.....+.. +...+. ...|+.+|
T Consensus 18 ~~~~~~~~~~~~~~s~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~SP 88 (662)
T 3azo_A 18 LVASRSGRPACVGAVG----DEVWWVAPRPAEAGRATLVRRRADGAEESALP-----APWNVRNRVFEYSGFPWAGVPRP 88 (662)
T ss_dssp HHHHTCSCCEEEEEET----TEEEEEEEETTTTTEEEEEEECTTSCEEESSC-----TTCCBCCCGGGTCCCCEEEECCS
T ss_pred HHhhcCCccceeEEcC----CeEEEEecCcccCCcEEEEEECCCCCcceeCC-----CCccccccccccCCccceeeeec
Confidence 4568999999999998 45666666 4455 88998755554444432 223333 34555559
Q ss_pred CCccEEEEe-ecCCeEEEEEcC--Cccccceeec-----cccceEEEEecCCCCceEEEEeCC----------CcEEEEE
Q 017553 96 DGIPFLVAG-GINGIIRVIDVS--NEKLHKSFVG-----HGDSINEIRTQPLKPSLVVSASKD----------ESVRLWN 157 (369)
Q Consensus 96 ~g~~~l~~~-~~dg~i~vwd~~--~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~s~~~d----------g~i~vwd 157 (369)
||+.+|+.+ ..+..|.++++. .......+.. |...+..++|+| +++.|++++.+ ..|++||
T Consensus 89 Dg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~~~~~~~i~~~~ 167 (662)
T 3azo_A 89 AGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLP-ERGEVWCMAEEFTGEGPSDVRRFLAAVP 167 (662)
T ss_dssp SSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEET-TTTEEEEEEEEECSSSTTCEEEEEEEEE
T ss_pred CCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECC-CCCEEEEEEecccCCCCCCceeEEEEEE
Confidence 999414444 345667777765 2033444544 667889999999 88888888876 5899999
Q ss_pred ccC------CcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCC--------cEEEEEcc-CceeeeeeeeeccCCCC
Q 017553 158 VQT------GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN--------TVKIWSMK-EFWTYVEKSFTWTDLPS 222 (369)
Q Consensus 158 ~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~--------~v~i~d~~-~~~~~~~~~~~~~~~~~ 222 (369)
+.+ ++...... .+...+..++|+| +++.|+.++.++ .|++||+. ++..
T Consensus 168 ~~~~~~~~~~~~~~l~~---~~~~~~~~~~~Sp-DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~------------- 230 (662)
T 3azo_A 168 LDGSAAADRSAVRELSD---DAHRFVTGPRLSP-DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRF------------- 230 (662)
T ss_dssp TTSTTTTCGGGSEESSC---SCSSEECCCEECT-TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCE-------------
T ss_pred CCCCccccCCceeEEEe---cCCCcccCceECC-CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcc-------------
Confidence 987 55433320 2456788899999 888888777653 79999998 4310
Q ss_pred CCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCC--eEEEecCCCCCCCCCCCccceeeeccCCC--------C
Q 017553 223 KFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDN--EIVLWEPKMKEQSPGEGTADILQKYPVPE--------C 290 (369)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--------~ 290 (369)
.........+...+..+.|+ |++++++..++ .|.+||+.+++. ......+. .
T Consensus 231 -------~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~---------~~l~~~~~~~~~p~w~~ 294 (662)
T 3azo_A 231 -------ADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAA---------TQLCRREEEFAGPLWTP 294 (662)
T ss_dssp -------EEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCE---------EESSCCSSBSSCCCCST
T ss_pred -------cccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCce---------eecccccccccCccccc
Confidence 01122223456778888887 67777777788 677777655431 11111111 1
Q ss_pred CeeEEEEeecCCccEEEEecCCCeEEEEEc--cCCCceeEEEeecCCCccceEEE-EecCCCCEEEEeecCCe--EEEEe
Q 017553 291 DIWFIKFSCDFHYNAAAIGNREGKIFVWEL--QSSPPVLIARLSHAQSKSPIRQT-AMSYDGSTILSCCEDGA--IWRWD 365 (369)
Q Consensus 291 ~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~--~~~~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~s~~~dg~--i~vw~ 365 (369)
.+..++|+++++ +++++.. +.+++|.+ .++ . ...+. .+...+..+ .++++.-++++++.+.. |++||
T Consensus 295 ~~~~~~~~~~~~--~~~~~~~-~~~~l~~~d~~~~--~-~~~l~--~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d 366 (662)
T 3azo_A 295 GMRWFAPLANGL--IAVVHGK-GAAVLGILDPESG--E-LVDAA--GPWTEWAATLTVSGTRAVGVAASPRTAYEVVELD 366 (662)
T ss_dssp TCCSEEECTTSC--EEEEEBS-SSCEEEEEETTTT--E-EEECC--SSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEE
T ss_pred cCceEeEeCCCE--EEEEEEc-CccEEEEEECCCC--c-EEEec--CCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEE
Confidence 145788999886 7888888 99999954 444 2 44554 455667766 55444334444555544 44455
Q ss_pred c
Q 017553 366 A 366 (369)
Q Consensus 366 ~ 366 (369)
+
T Consensus 367 ~ 367 (662)
T 3azo_A 367 T 367 (662)
T ss_dssp T
T ss_pred C
Confidence 4
No 166
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.85 E-value=8.8e-18 Score=141.06 Aligned_cols=263 Identities=13% Similarity=0.065 Sum_probs=171.8
Q ss_pred cEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEee----------cCCeEEEEEcCCccccceeecc-
Q 017553 59 RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG----------INGIIRVIDVSNEKLHKSFVGH- 127 (369)
Q Consensus 59 ~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~~- 127 (369)
.|.+||..+++.+..+.. ...+ .++++ |+|+ +++++. .++.|.+||+.+.+.+.++...
T Consensus 32 ~v~v~D~~t~~~~~~i~~-----g~~p--~i~~s--pdg~-~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~ 101 (361)
T 2oiz_A 32 RVHVYDYTNGKFLGMVPT-----AFNG--HVQVS--NDGK-KIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPP 101 (361)
T ss_dssp EEEEEETTTCCEEEEEEC-----CEEE--EEEEC--TTSS-EEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECT
T ss_pred eEEEEECCCCeEEEEecC-----CCCC--ceEEC--CCCC-EEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCc
Confidence 499999988887766653 2222 46666 9999 777765 3678999999988888777632
Q ss_pred -----ccceEEEEecCCCCceEEEEeC--CCcEEEEEccCCcEEEE-eeccCCCCCcEEEEEecCCCceEEEEEeeCCcE
Q 017553 128 -----GDSINEIRTQPLKPSLVVSASK--DESVRLWNVQTGICILI-FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTV 199 (369)
Q Consensus 128 -----~~~v~~~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v 199 (369)
......++++| ++++|+++.. +++|.+||+.+++.+.. +. +... ..+.+.|.+...+++.+.||.+
T Consensus 102 ~~~~~g~~p~~i~~sp-dg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~----~~~~-~~v~~~p~~~~~~~~~~~dg~~ 175 (361)
T 2oiz_A 102 KRVQGLNYDGLFRQTT-DGKFIVLQNASPATSIGIVDVAKGDYVEDVTA----AAGC-WSVIPQPNRPRSFMTICGDGGL 175 (361)
T ss_dssp TBCCBCCCGGGEEECT-TSSEEEEEEESSSEEEEEEETTTTEEEEEEGG----GTTE-EEEEECTTSSSEEEEEETTSSE
T ss_pred cccccCCCcceEEECC-CCCEEEEECCCCCCeEEEEECCCCcEEEEEec----CCCc-ceeEEcCCCCeeEEEECCCCcE
Confidence 24567899999 8888888764 68999999999988877 54 3222 2356677455778888999999
Q ss_pred EEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCcee-eeeeeCcEEEEeecCCeEEEecCCCCCCCCCCCc
Q 017553 200 KIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD-CNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGT 278 (369)
Q Consensus 200 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 278 (369)
.+|++............ ...+.....++. ....++..++..+.++.+.++|+......
T Consensus 176 ~~v~~~~~g~~~~~~~~----------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~----- 234 (361)
T 2oiz_A 176 LTINLGEDGKVASQSRS----------------KQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVK----- 234 (361)
T ss_dssp EEEEECTTSSEEEEEEC----------------CCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCE-----
T ss_pred EEEEECCCCcEeeeccc----------------cceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCce-----
Confidence 99998652111100000 000111111110 01122556666678899999998754311
Q ss_pred cceeeeccC----------CCCCeeEEEEeecCCccEEEEec----------CCCeEEEEEccCCCceeEEEeecCCCcc
Q 017553 279 ADILQKYPV----------PECDIWFIKFSCDFHYNAAAIGN----------REGKIFVWELQSSPPVLIARLSHAQSKS 338 (369)
Q Consensus 279 ~~~~~~~~~----------~~~~i~~~~~s~~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 338 (369)
.+..+.. .......++|+|+++. ++++.. ..+.|.+||+.+. +.+..+. .+.
T Consensus 235 --~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~-lyv~~~~~~~~~~~~~~~~~v~viD~~t~--~~v~~i~--~~~- 306 (361)
T 2oiz_A 235 --VDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGR-MYVFMHPDGKEGTHKFPAAEIWVMDTKTK--QRVARIP--GRD- 306 (361)
T ss_dssp --EEEEEESCCHHHHHTTCEECCSSCEEEETTTTE-EEEEEESSCCTTCTTCCCSEEEEEETTTT--EEEEEEE--CTT-
T ss_pred --ecccccccCccccccccccCCeeEEEEecCCCe-EEEEEccCCCcccccCCCceEEEEECCCC--cEEEEEe--cCC-
Confidence 1111100 0011223789999873 222222 1458999999998 5666666 333
Q ss_pred ceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 339 PIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 339 ~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
+.+++|+|||++|++++. +.|.+||.++
T Consensus 307 -p~~ia~spdg~~l~v~n~-~~v~v~D~~t 334 (361)
T 2oiz_A 307 -ALSMTIDQQRNLMLTLDG-GNVNVYDISQ 334 (361)
T ss_dssp -CCEEEEETTTTEEEEECS-SCEEEEECSS
T ss_pred -eeEEEECCCCCEEEEeCC-CeEEEEECCC
Confidence 889999999999998887 9999999875
No 167
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.84 E-value=1.4e-17 Score=135.57 Aligned_cols=237 Identities=13% Similarity=0.100 Sum_probs=166.0
Q ss_pred cceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceee------ccccceEEEEecCCCCceEEEEeC-CCcEEEE
Q 017553 84 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFV------GHGDSINEIRTQPLKPSLVVSASK-DESVRLW 156 (369)
Q Consensus 84 ~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~s~~~-dg~i~vw 156 (369)
.....+++. ++|. ++++...++.|++||.. ++.+..+. ++...+..+++.+.++.++++... ++.|++|
T Consensus 30 ~~p~~v~~~--~~g~-l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 30 TEPSGVAVN--AQND-IIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp SCEEEEEEC--TTCC-EEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CCCceEEEC--CCCC-EEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 345667776 8898 88888889999999976 55555553 234578899995326666666643 7899999
Q ss_pred EccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeee
Q 017553 157 NVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA 236 (369)
Q Consensus 157 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (369)
| .+++.+..+.. .+...+.+++++| +++++++...++.|.+||..... +..+
T Consensus 106 d-~~g~~~~~~~~--~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~~------------------------~~~~ 157 (286)
T 1q7f_A 106 N-QYGQFVRKFGA--TILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQNGNV------------------------LHKF 157 (286)
T ss_dssp C-TTSCEEEEECT--TTCSCEEEEEECT-TSCEEEEETTTTEEEEECTTSCE------------------------EEEE
T ss_pred C-CCCcEEEEecC--ccCCCceEEEEeC-CCCEEEEECCCCEEEEEcCCCCE------------------------EEEe
Confidence 9 56777766642 3446789999999 78888887778899999965411 1111
Q ss_pred --ccCCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCC--CCCeeEEEEeecCCccEEEEec
Q 017553 237 --SVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP--ECDIWFIKFSCDFHYNAAAIGN 310 (369)
Q Consensus 237 --~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~s~~~~~~~l~~~~ 310 (369)
..+...+..++++ ++++++...++.|++||.... .+..+... ...+..+++++++. ++++..
T Consensus 158 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~----------~~~~~~~~g~~~~p~~i~~d~~G~--l~v~~~ 225 (286)
T 1q7f_A 158 GCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ----------YLRQIGGEGITNYPIGVGINSNGE--ILIADN 225 (286)
T ss_dssp ECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC----------EEEEESCTTTSCSEEEEEECTTCC--EEEEEC
T ss_pred CCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCC----------EEEEEccCCccCCCcEEEECCCCC--EEEEeC
Confidence 1334457788887 566666677899999997543 23333322 25678899999985 677776
Q ss_pred CCC-eEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 311 REG-KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 311 ~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
.++ .|.+||.... .+..+........+.+++++|+|+++++ +.|+.|++|++..
T Consensus 226 ~~~~~i~~~~~~g~---~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 226 HNNFNLTIFTQDGQ---LISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp SSSCEEEEECTTSC---EEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred CCCEEEEEECCCCC---EEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 665 9999996432 3344442233345789999999987777 5799999999854
No 168
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.82 E-value=2.2e-17 Score=138.39 Aligned_cols=261 Identities=10% Similarity=-0.011 Sum_probs=155.4
Q ss_pred cceeeeeecccCC-cCeEEEEEeeccCCCccEE-EEecCCc-EEEEEecCCceeEEEeeecc-CCcccceeEEEeeecCC
Q 017553 21 REYRVTNKLQEGK-RPLYAVVFNFIDSRYFNVF-ATVGGNR-VTVYQCLEGGVIAALQSYVD-EDKEESFYTVSWACNVD 96 (369)
Q Consensus 21 ~~~~~~~~~~~h~-~~v~~~~~s~~~~~~~~~l-a~~~~~~-v~iw~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~ 96 (369)
...+....+..+. ..+..++|+| +++.+ ++...++ |.+||+.+++....+..... ......+..++|+ |+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~s~----dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~s--pd 102 (349)
T 1jmx_B 29 ASDTVYKSCVMPDKFGPGTAMMAP----DNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAIS--PD 102 (349)
T ss_dssp TTTEEEEEEECSSCCSSCEEEECT----TSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEEC--TT
T ss_pred CCCcEEEEEecCCCCCCceeEECC----CCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEEC--CC
Confidence 3344555554332 2578999999 56654 4555555 99999988887766652110 0002335667777 99
Q ss_pred CccEEEEeecC------------CeEEEEEcCCccccc---eeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCC
Q 017553 97 GIPFLVAGGIN------------GIIRVIDVSNEKLHK---SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG 161 (369)
Q Consensus 97 g~~~l~~~~~d------------g~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~ 161 (369)
|+ +|++++.+ +.|.+||+.+++... .+. +...+.+++|+| +++ +++++. .|.+||+.++
T Consensus 103 g~-~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~-dg~-l~~~~~--~i~~~d~~~~ 176 (349)
T 1jmx_B 103 GK-EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAAD-DGS-LYVAGP--DIYKMDVKTG 176 (349)
T ss_dssp SS-EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECT-TSC-EEEESS--SEEEECTTTC
T ss_pred CC-EEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECC-CCc-EEEccC--cEEEEeCCCC
Confidence 99 78777755 899999998865433 333 344688999999 777 555543 4999999999
Q ss_pred cEEEEeeccC-CCC-----------------C---cEEEEEecCCCceEE-EEEeeCCcEEEEEccCceeeeeeeeeccC
Q 017553 162 ICILIFAGAG-GHR-----------------N---EVLSVDFHPSDIYRI-ASCGMDNTVKIWSMKEFWTYVEKSFTWTD 219 (369)
Q Consensus 162 ~~~~~~~~~~-~~~-----------------~---~v~~~~~~~~~~~~l-~~~~~d~~v~i~d~~~~~~~~~~~~~~~~ 219 (369)
+.+..+.... +.. . ....+++++ ++... ........+..+|..++...
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~--------- 246 (349)
T 1jmx_B 177 KYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFK-DDKQDPATADLLYGYLSVDLKTGKTH--------- 246 (349)
T ss_dssp CEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC--------CCCEEEEEEEEEETTTCCEE---------
T ss_pred ceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecC-CCcCCccccccceeEEEEeccCCcEE---------
Confidence 8887765210 000 0 234466654 22111 00000111122333332110
Q ss_pred CCCCCCCceeecceeeeccCCCceeeeeee---CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEE
Q 017553 220 LPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIK 296 (369)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 296 (369)
......+...+..+.++ +++++++ ++.|.+||+.+.+ .+..+.. ...+..++
T Consensus 247 -------------~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~---------~~~~~~~-~~~~~~~~ 301 (349)
T 1jmx_B 247 -------------TQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRK---------LIKAANL-DHTYYCVA 301 (349)
T ss_dssp -------------EEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTE---------EEEEEEC-SSCCCEEE
T ss_pred -------------ecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCe---------EEEEEcC-CCCccceE
Confidence 00111133344555553 5677776 8899999998775 3344333 23567899
Q ss_pred EeecCCccEEEEecCCCeEEEEEccCCCceeEEEee
Q 017553 297 FSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLS 332 (369)
Q Consensus 297 ~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 332 (369)
|+|+++ +|++++.++.|.+||+.++ +.+..+.
T Consensus 302 ~s~dg~--~l~~~~~~~~v~v~d~~~~--~~~~~~~ 333 (349)
T 1jmx_B 302 FDKKGD--KLYLGGTFNDLAVFNPDTL--EKVKNIK 333 (349)
T ss_dssp ECSSSS--CEEEESBSSEEEEEETTTT--EEEEEEE
T ss_pred ECCCCC--EEEEecCCCeEEEEecccc--ceeeeee
Confidence 999987 5666778899999999987 4455554
No 169
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.82 E-value=2.1e-17 Score=138.71 Aligned_cols=290 Identities=11% Similarity=0.025 Sum_probs=184.1
Q ss_pred cceeeeeecccCCcCeEEEEEeeccCCCccEEEEecC----------Cc-EEEEEecCCceeEEEeeeccC-CcccceeE
Q 017553 21 REYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGG----------NR-VTVYQCLEGGVIAALQSYVDE-DKEESFYT 88 (369)
Q Consensus 21 ~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~----------~~-v~iw~~~~~~~~~~~~~~~~~-~~~~~v~~ 88 (369)
...++...+..+..+ .++|+| +|++++++.. +. |.+||..+++.+..+...... .+......
T Consensus 39 ~t~~~~~~i~~g~~p--~i~~sp----dg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~ 112 (361)
T 2oiz_A 39 TNGKFLGMVPTAFNG--HVQVSN----DGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGL 112 (361)
T ss_dssp TTCCEEEEEECCEEE--EEEECT----TSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGG
T ss_pred CCCeEEEEecCCCCC--ceEECC----CCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcce
Confidence 344555666666655 899999 6888888752 33 999999888888777643110 01223444
Q ss_pred EEeeecCCCccEEEEeec--CCeEEEEEcCCccccce-eeccccceEEEEecCCCCceEEEEeCCCcEEEEEccC-CcEE
Q 017553 89 VSWACNVDGIPFLVAGGI--NGIIRVIDVSNEKLHKS-FVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT-GICI 164 (369)
Q Consensus 89 ~~~~~~~~g~~~l~~~~~--dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~ 164 (369)
++++ |+|+ +|+++.. ++.|.+||+.+++.+.. +.. .+ ...+.+.|.+...+++.+.||.+.+|++.. ++..
T Consensus 113 i~~s--pdg~-~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~ 187 (361)
T 2oiz_A 113 FRQT--TDGK-FIVLQNASPATSIGIVDVAKGDYVEDVTAA-AG-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVA 187 (361)
T ss_dssp EEEC--TTSS-EEEEEEESSSEEEEEEETTTTEEEEEEGGG-TT-EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEE
T ss_pred EEEC--CCCC-EEEEECCCCCCeEEEEECCCCcEEEEEecC-CC-cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEe
Confidence 6666 9999 7777764 57999999999988777 542 22 233567775557888999999999999865 5544
Q ss_pred EEee---ccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCC
Q 017553 165 LIFA---GAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN 241 (369)
Q Consensus 165 ~~~~---~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (369)
.... .......++ .+.+.| ++..++..+.++.|.++|+............... ... ......+.
T Consensus 188 ~~~~~~~~~~~~~~~~-~~~~~~-~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~----------~~~-~~~~~~p~ 254 (361)
T 2oiz_A 188 SQSRSKQMFSVKDDPI-FIAPAL-DKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLN----------DED-KAKNWVPG 254 (361)
T ss_dssp EEEECCCCSCTTTSCB-CSCCEE-CSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCC----------HHH-HHTTCEEC
T ss_pred eeccccceEcCCCCce-EEEecc-cCCEEEEEeCCCeEEEEEecCCCceecccccccC----------ccc-cccccccC
Confidence 2221 000122222 233455 4555666678899999998753221111100000 000 00000011
Q ss_pred ceeeeeee--CcEEEEeec-----------CCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEE
Q 017553 242 YVDCNRWL--GDFILSKSV-----------DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAI 308 (369)
Q Consensus 242 ~v~~~~~~--~~~l~~~~~-----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~ 308 (369)
....++++ ++.++++.. .+.|.+||+.+.+ .+..+..+. ...++|+|+++ +|++
T Consensus 255 g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~---------~v~~i~~~~--p~~ia~spdg~--~l~v 321 (361)
T 2oiz_A 255 GYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQ---------RVARIPGRD--ALSMTIDQQRN--LMLT 321 (361)
T ss_dssp CSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTE---------EEEEEECTT--CCEEEEETTTT--EEEE
T ss_pred CeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCc---------EEEEEecCC--eeEEEECCCCC--EEEE
Confidence 11123444 566665543 3589999999876 677777765 89999999997 6776
Q ss_pred ecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCC
Q 017553 309 GNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGS 350 (369)
Q Consensus 309 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 350 (369)
++. +.|.+||..+++.+.+..+. ........++++|+|+
T Consensus 322 ~n~-~~v~v~D~~t~~l~~~~~i~--~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 322 LDG-GNVNVYDISQPEPKLLRTIE--GAAEASLQVQFHPVGG 360 (361)
T ss_dssp ECS-SCEEEEECSSSSCEEEEEET--TSCSSEEEEEECCCSC
T ss_pred eCC-CeEEEEECCCCcceeeEEec--cCCCCcEEEEecCCCC
Confidence 666 99999999998555666654 4446778899999986
No 170
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.82 E-value=1.5e-17 Score=138.07 Aligned_cols=254 Identities=12% Similarity=0.068 Sum_probs=171.8
Q ss_pred ccceeEEEeeecCCCccEEEEeecC------------------------CeEEEEEcCCccccceee-ccccceEEEEec
Q 017553 83 EESFYTVSWACNVDGIPFLVAGGIN------------------------GIIRVIDVSNEKLHKSFV-GHGDSINEIRTQ 137 (369)
Q Consensus 83 ~~~v~~~~~~~~~~g~~~l~~~~~d------------------------g~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~ 137 (369)
-..+..+++. |+|+ ++++...+ +.|.+||..+++.+..+. ++-.....++++
T Consensus 23 l~~v~~va~d--~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d 99 (329)
T 3fvz_A 23 PGQVSGVALD--SKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSID 99 (329)
T ss_dssp CSCEEEEEEC--TTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEEC
T ss_pred cCCceEEEEC--CCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEEC
Confidence 3467778877 8998 77777766 479999998888766554 344578999999
Q ss_pred CCCCceEEEEeCCCcEEEEEccCCc-EEEEeecc------CCCCCcEEEEEecCCCceEEEEEe-eCCcEEEEEccCcee
Q 017553 138 PLKPSLVVSASKDESVRLWNVQTGI-CILIFAGA------GGHRNEVLSVDFHPSDIYRIASCG-MDNTVKIWSMKEFWT 209 (369)
Q Consensus 138 ~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~------~~~~~~v~~~~~~~~~~~~l~~~~-~d~~v~i~d~~~~~~ 209 (369)
| +++++++...++.|++||..... .+..+... .++...+..++++|.++.++++.+ .++.|++||... ..
T Consensus 100 ~-~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g-~~ 177 (329)
T 3fvz_A 100 T-DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG-KF 177 (329)
T ss_dssp T-TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS-CE
T ss_pred C-CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC-CE
Confidence 9 88888888889999999986442 44444210 134457899999985677777776 689999999543 21
Q ss_pred eeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee---CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeecc
Q 017553 210 YVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP 286 (369)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 286 (369)
....... .... .....+-.....++++ +.++++...++.|++||..+++ .+..+.
T Consensus 178 ~~~~~~~--g~~~-----------~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~---------~~~~~~ 235 (329)
T 3fvz_A 178 VTQWGEE--SSGS-----------SPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKE---------FVREIK 235 (329)
T ss_dssp EEEECEE--CCSS-----------SCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCC---------EEEEEC
T ss_pred EEEeccC--CCCC-----------CCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCc---------EEEEEe
Confidence 1110000 0000 0001122346778886 4566666778899999998665 344442
Q ss_pred --CCCCCeeEEEEee------cCCccEEEEecCCCeEEEEEccCCCceeEEEee-cCCCccceEEEEecCCCCEEEEeec
Q 017553 287 --VPECDIWFIKFSC------DFHYNAAAIGNREGKIFVWELQSSPPVLIARLS-HAQSKSPIRQTAMSYDGSTILSCCE 357 (369)
Q Consensus 287 --~~~~~i~~~~~s~------~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~ 357 (369)
.+...+..++++| ++. ..++...+..|++||..+++ .+..+. ...+...+..++++|+|.++++...
T Consensus 236 ~~~~~~~~~~~~~~pg~~~~~~g~--~~v~~~~~~~v~~~~~~~g~--~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~ 311 (329)
T 3fvz_A 236 HASFGRNVFAISYIPGFLFAVNGK--PYFGDQEPVQGFVMNFSSGE--IIDVFKPVRKHFDMPHDIVASEDGTVYIGDAH 311 (329)
T ss_dssp CTTTTTCEEEEEEETTEEEEEECC--CCTTCSCCCCEEEEETTTCC--EEEEECCSSSCCSSEEEEEECTTSEEEEEESS
T ss_pred ccccCCCcceeeecCCEEEEeCCC--EEeccCCCcEEEEEEcCCCe--EEEEEcCCCCccCCeeEEEECCCCCEEEEECC
Confidence 3345677888888 332 22233445689999999884 444442 1245567899999999988888889
Q ss_pred CCeEEEEecC
Q 017553 358 DGAIWRWDAI 367 (369)
Q Consensus 358 dg~i~vw~~~ 367 (369)
++.|++|++.
T Consensus 312 ~~~I~~~~~~ 321 (329)
T 3fvz_A 312 TNTVWKFTLT 321 (329)
T ss_dssp SCCEEEEEEE
T ss_pred CCEEEEEeCC
Confidence 9999999975
No 171
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.81 E-value=1.1e-17 Score=142.50 Aligned_cols=257 Identities=10% Similarity=0.023 Sum_probs=164.5
Q ss_pred EEEecCCceeEEEeeeccCCcccceeE-----EEeeecCCCccEEEEeec-CC--eEEEEEcCCccccceeeccccceEE
Q 017553 62 VYQCLEGGVIAALQSYVDEDKEESFYT-----VSWACNVDGIPFLVAGGI-NG--IIRVIDVSNEKLHKSFVGHGDSINE 133 (369)
Q Consensus 62 iw~~~~~~~~~~~~~~~~~~~~~~v~~-----~~~~~~~~g~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~v~~ 133 (369)
.++..++..+..+.. +...... .+|+ |||+ .|+.++. +| .|.+||+.+++......++...+..
T Consensus 14 ~~~~~~g~~~~~lt~-----~~~~~~~~~~~~~~~S--pDg~-~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~ 85 (388)
T 3pe7_A 14 YQDASTGAQVTRLTP-----PDVTCHRNYFYQKCFT--RDGS-KLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFG 85 (388)
T ss_dssp EECTTTCCEEEECSC-----TTSCEECCCTTSCCBC--TTSC-EEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSS
T ss_pred EecCCCCcceEEecC-----CcccccchhhcCccCC--CCCC-EEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccc
Confidence 345566666666553 2222222 5566 9999 6776665 66 4888899888877766666666667
Q ss_pred EEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEE--ecCCCceEEEEEe-----------------
Q 017553 134 IRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVD--FHPSDIYRIASCG----------------- 194 (369)
Q Consensus 134 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~l~~~~----------------- 194 (369)
+.|+| +++.|+.++.++.|++||+.+++...... .+...+.... ++| ++.+++...
T Consensus 86 ~~~sp-dg~~l~~~~~~~~l~~~d~~~g~~~~~~~---~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T 3pe7_A 86 GFLSP-DDDALFYVKDGRNLMRVDLATLEENVVYQ---VPAEWVGYGTWVANS-DCTKLVGIEIRREDWVPLTDWKKFHE 160 (388)
T ss_dssp CEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEE---CCTTEEEEEEEEECT-TSSEEEEEEEEGGGCCCCCSHHHHHH
T ss_pred eEEcC-CCCEEEEEeCCCeEEEEECCCCcceeeee---chhhcccccceeECC-CCCeeccccccCcccccccccchhhh
Confidence 88999 89999999999999999999998776665 3555554443 477 777666422
Q ss_pred -----eCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeeeC---cEEEEeecC------C
Q 017553 195 -----MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLG---DFILSKSVD------N 260 (369)
Q Consensus 195 -----~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~d------~ 260 (369)
.+..|.+||+.+++ ...+..+...+..+.|++ +.++....+ .
T Consensus 161 ~~~~~~~~~l~~~d~~~g~------------------------~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~ 216 (388)
T 3pe7_A 161 FYFTKPCCRLMRVDLKTGE------------------------STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDA 216 (388)
T ss_dssp HGGGCCCEEEEEEETTTCC------------------------EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSC
T ss_pred hhccCCcceEEEEECCCCc------------------------eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcc
Confidence 33678889988742 222233455667777764 567665543 3
Q ss_pred eEEEecCCCCCCCCCCCccceeeeccCCC--CCeeEEEEeecCCccEEEEecC-C---CeEEEEEccCCCceeEEEeecC
Q 017553 261 EIVLWEPKMKEQSPGEGTADILQKYPVPE--CDIWFIKFSCDFHYNAAAIGNR-E---GKIFVWELQSSPPVLIARLSHA 334 (369)
Q Consensus 261 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~s~~~~~~~l~~~~~-d---g~i~i~d~~~~~~~~~~~~~~~ 334 (369)
.|.++|+.... ...+..+. ..+...+|+|+++. +++++.. . +.|++||+.+++...+..+.
T Consensus 217 ~l~~~d~~~~~----------~~~l~~~~~~~~~~~~~~spdg~~-l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-- 283 (388)
T 3pe7_A 217 RMWLINEDGTN----------MRKVKTHAEGESCTHEFWVPDGSA-LVYVSYLKGSPDRFIYSADPETLENRQLTSMP-- 283 (388)
T ss_dssp SEEEEETTSCC----------CEESCCCCTTEEEEEEEECTTSSC-EEEEEEETTCCCEEEEEECTTTCCEEEEEEEC--
T ss_pred eEEEEeCCCCc----------eEEeeeCCCCcccccceECCCCCE-EEEEecCCCCCcceEEEEecCCCceEEEEcCC--
Confidence 68888876553 12222222 24667899999973 2232322 2 24999999998755554443
Q ss_pred CCccc---eEEEEecCCCCEEEEe---------ecCCeEEEEecCC
Q 017553 335 QSKSP---IRQTAMSYDGSTILSC---------CEDGAIWRWDAIP 368 (369)
Q Consensus 335 ~~~~~---v~~~~~s~~~~~l~s~---------~~dg~i~vw~~~~ 368 (369)
++... ...+.|+|||+.|+.. ..+..|++||+.+
T Consensus 284 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~ 329 (388)
T 3pe7_A 284 ACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKN 329 (388)
T ss_dssp CEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTT
T ss_pred CceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccC
Confidence 21100 1224799999988754 4566899999864
No 172
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.80 E-value=2.2e-16 Score=131.07 Aligned_cols=247 Identities=11% Similarity=0.019 Sum_probs=172.9
Q ss_pred CcCeEEEEEeeccCCCccEEEEecCC-------------------------cEEEEEecCCceeEEEeeeccCCccccee
Q 017553 33 KRPLYAVVFNFIDSRYFNVFATVGGN-------------------------RVTVYQCLEGGVIAALQSYVDEDKEESFY 87 (369)
Q Consensus 33 ~~~v~~~~~s~~~~~~~~~la~~~~~-------------------------~v~iw~~~~~~~~~~~~~~~~~~~~~~v~ 87 (369)
-+.|.+|+++| +|+++++...+ .|.+||..+++....... .+-....
T Consensus 23 l~~v~~va~d~----~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~----~~~~~p~ 94 (329)
T 3fvz_A 23 PGQVSGVALDS----KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGK----NLFYLPH 94 (329)
T ss_dssp CSCEEEEEECT----TCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECT----TTCSSEE
T ss_pred cCCceEEEECC----CCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCC----CccCCce
Confidence 46799999999 68999988877 399999877877554331 2334566
Q ss_pred EEEeeecCCCccEEEEeecCCeEEEEEcCCcc-cccee---------eccccceEEEEecCCCCceEEEEe-CCCcEEEE
Q 017553 88 TVSWACNVDGIPFLVAGGINGIIRVIDVSNEK-LHKSF---------VGHGDSINEIRTQPLKPSLVVSAS-KDESVRLW 156 (369)
Q Consensus 88 ~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~-~~~~~---------~~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~vw 156 (369)
.+++. ++|. ++++...++.|++||..... .+..+ .++-.....++++|.++.++++.+ .++.|++|
T Consensus 95 gia~d--~~g~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~ 171 (329)
T 3fvz_A 95 GLSID--TDGN-YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQF 171 (329)
T ss_dssp EEEEC--TTSC-EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEE
T ss_pred EEEEC--CCCC-EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEE
Confidence 67777 9998 88888889999999975432 44444 234446899999995677777776 68999999
Q ss_pred EccCCcEEEEeeccC-------CCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCcee
Q 017553 157 NVQTGICILIFAGAG-------GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYV 229 (369)
Q Consensus 157 d~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (369)
| .+++.+..+.... ++-.....++++|+++.++++...++.|++||..+++.....
T Consensus 172 ~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~---------------- 234 (329)
T 3fvz_A 172 S-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREI---------------- 234 (329)
T ss_dssp C-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE----------------
T ss_pred c-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEE----------------
Confidence 9 5677777664210 122348899999944888888888999999999853321110
Q ss_pred ecceeeeccCCCceeeeeee--------CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeec---cCCCCCeeEEEEe
Q 017553 230 QFPVFIASVHSNYVDCNRWL--------GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY---PVPECDIWFIKFS 298 (369)
Q Consensus 230 ~~~~~~~~~~~~~v~~~~~~--------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~s 298 (369)
....+...+..+++. ++..++...+..|++||+.+++ .+..+ ..+......++++
T Consensus 235 -----~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~---------~~~~~~~~~~~~~~p~~ia~~ 300 (329)
T 3fvz_A 235 -----KHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGE---------IIDVFKPVRKHFDMPHDIVAS 300 (329)
T ss_dssp -----CCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCC---------EEEEECCSSSCCSSEEEEEEC
T ss_pred -----eccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCe---------EEEEEcCCCCccCCeeEEEEC
Confidence 011233344455554 3333333445689999998776 34444 3445668899999
Q ss_pred ecCCccEEEEecCCCeEEEEEccCC
Q 017553 299 CDFHYNAAAIGNREGKIFVWELQSS 323 (369)
Q Consensus 299 ~~~~~~~l~~~~~dg~i~i~d~~~~ 323 (369)
|++. ++++...+++|++|++...
T Consensus 301 ~dG~--lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 301 EDGT--VYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp TTSE--EEEEESSSCCEEEEEEEEC
T ss_pred CCCC--EEEEECCCCEEEEEeCCcc
Confidence 9984 7888888999999998753
No 173
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.80 E-value=7.3e-17 Score=134.40 Aligned_cols=276 Identities=10% Similarity=-0.007 Sum_probs=174.5
Q ss_pred cCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEE
Q 017553 34 RPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRV 112 (369)
Q Consensus 34 ~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~v 112 (369)
..|.+++|+| ++..++..+.++ ++.|. ++....+. .+...+..++|. ++|+ +++++..++.|.+
T Consensus 6 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~---~~~~~~~~-----~~~~~~~~~~~~--~~g~-l~~~~~~~~~i~~ 70 (333)
T 2dg1_A 6 QDLPTLFYSG----KSNSAVPIISESELQTIT---AEPWLEIS-----KKGLQLEGLNFD--RQGQ-LFLLDVFEGNIFK 70 (333)
T ss_dssp CCCCBCCSCG----GGGCSSCCCCGGGSCEEE---CEEEEEEE-----SSCCCEEEEEEC--TTSC-EEEEETTTCEEEE
T ss_pred cccceeeecC----CccceeEEeecccCcccc---cceeEEEe-----ccCccccCcEEC--CCCC-EEEEECCCCEEEE
Confidence 4578888998 355566555555 88883 44444444 233455678887 8998 7888888999999
Q ss_pred EEcCCccccceeeccccceEEEEecCCCCceEEEEeCC----CcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCce
Q 017553 113 IDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD----ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY 188 (369)
Q Consensus 113 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 188 (369)
||..+++.......+...+.+++++| +++++++...+ +.|.+||..++.....+.. ..+...+.+++++| +++
T Consensus 71 ~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~i~~d~-~g~ 147 (333)
T 2dg1_A 71 INPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIED-LSTAYCIDDMVFDS-KGG 147 (333)
T ss_dssp ECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECS-SSSCCCEEEEEECT-TSC
T ss_pred EeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEcc-CccCCcccceEECC-CCC
Confidence 99987775544435667899999999 77877777666 6899999988776534331 12456789999999 777
Q ss_pred EEEEEee------CCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEE-EEeecC
Q 017553 189 RIASCGM------DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFI-LSKSVD 259 (369)
Q Consensus 189 ~l~~~~~------d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l-~~~~~d 259 (369)
++++... .+.|..+|..++. ...+......+..++|+ ++.+ ++...+
T Consensus 148 l~v~~~~~~~~~~~~~l~~~~~~~~~------------------------~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~ 203 (333)
T 2dg1_A 148 FYFTDFRGYSTNPLGGVYYVSPDFRT------------------------VTPIIQNISVANGIALSTDEKVLWVTETTA 203 (333)
T ss_dssp EEEEECCCBTTBCCEEEEEECTTSCC------------------------EEEEEEEESSEEEEEECTTSSEEEEEEGGG
T ss_pred EEEEeccccccCCCceEEEEeCCCCE------------------------EEEeecCCCcccceEECCCCCEEEEEeCCC
Confidence 7776553 2345555544311 11111122345677776 5555 444567
Q ss_pred CeEEEecCCCC-CCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecC----
Q 017553 260 NEIVLWEPKMK-EQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHA---- 334 (369)
Q Consensus 260 ~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---- 334 (369)
+.|.+||+.+. ...... .......+..+ ..+..+++++++. ++++...++.|.+||.. ++ .+..+...
T Consensus 204 ~~i~~~d~~~~g~~~~~~-~~~~~~~~~~~-~~~~~i~~d~~G~--l~v~~~~~~~v~~~d~~-g~--~~~~~~~~~~~~ 276 (333)
T 2dg1_A 204 NRLHRIALEDDGVTIQPF-GATIPYYFTGH-EGPDSCCIDSDDN--LYVAMYGQGRVLVFNKR-GY--PIGQILIPGRDE 276 (333)
T ss_dssp TEEEEEEECTTSSSEEEE-EEEEEEECCSS-SEEEEEEEBTTCC--EEEEEETTTEEEEECTT-SC--EEEEEECTTGGG
T ss_pred CeEEEEEecCCCcCcccc-cceEEEecCCC-CCCCceEECCCCC--EEEEEcCCCEEEEECCC-CC--EEEEEEcCCCcc
Confidence 89999998642 210000 00001111111 3567799999985 66666677899999984 42 33344311
Q ss_pred CCccceEEEEecCCCCEEEEeecC
Q 017553 335 QSKSPIRQTAMSYDGSTILSCCED 358 (369)
Q Consensus 335 ~~~~~v~~~~~s~~~~~l~s~~~d 358 (369)
++...+.+++|+||++.|+.++.+
T Consensus 277 g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 277 GHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp TCSCBCCEEEECTTSCEEEEEEEC
T ss_pred ccccCcceEEECCCCCEEEEEeCc
Confidence 122268899999998777666655
No 174
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.80 E-value=5.5e-16 Score=126.18 Aligned_cols=244 Identities=10% Similarity=0.098 Sum_probs=166.4
Q ss_pred cCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeec-cCCcccceeEEEeeecCCCccEEEEeec-C
Q 017553 31 EGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYV-DEDKEESFYTVSWACNVDGIPFLVAGGI-N 107 (369)
Q Consensus 31 ~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~g~~~l~~~~~-d 107 (369)
++-..+.+++++| +++++++...++ |.+||.. ++....+.... ...+...+..+++. .+++. ++++... +
T Consensus 27 g~~~~p~~v~~~~----~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~-~~~g~-l~v~~~~~~ 99 (286)
T 1q7f_A 27 GQFTEPSGVAVNA----QNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVV-RNSGD-IIVTERSPT 99 (286)
T ss_dssp TCBSCEEEEEECT----TCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEE-TTTTE-EEEEECGGG
T ss_pred CccCCCceEEECC----CCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEE-cCCCe-EEEEcCCCC
Confidence 4556799999998 578888876666 9999965 65555443211 01223456667762 25676 5555543 8
Q ss_pred CeEEEEEcCCccccceeec-cccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCC
Q 017553 108 GIIRVIDVSNEKLHKSFVG-HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSD 186 (369)
Q Consensus 108 g~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 186 (369)
+.|++|| .+++.+..+.. +...+..++++| +++++++...++.|.+||.. ++.+..+... .+...+..++++| +
T Consensus 100 ~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~-~~~~~p~~i~~~~-~ 174 (286)
T 1q7f_A 100 HQIQIYN-QYGQFVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN-GNVLHKFGCS-KHLEFPNGVVVND-K 174 (286)
T ss_dssp CEEEEEC-TTSCEEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECT-TTCSSEEEEEECS-S
T ss_pred CEEEEEC-CCCcEEEEecCccCCCceEEEEeC-CCCEEEEECCCCEEEEEcCC-CCEEEEeCCC-CccCCcEEEEECC-C
Confidence 8999999 56766665542 345789999999 77888887788999999964 5666555421 2445689999999 8
Q ss_pred ceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeec--cCCCceeeeeee--CcEEEEeecCC-e
Q 017553 187 IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS--VHSNYVDCNRWL--GDFILSKSVDN-E 261 (369)
Q Consensus 187 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~--~~~l~~~~~d~-~ 261 (369)
++++++...++.|++||.... .+..+. ++...+..++++ ++++++...++ .
T Consensus 175 g~l~v~~~~~~~i~~~~~~g~------------------------~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~ 230 (286)
T 1q7f_A 175 QEIFISDNRAHCVKVFNYEGQ------------------------YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFN 230 (286)
T ss_dssp SEEEEEEGGGTEEEEEETTCC------------------------EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCE
T ss_pred CCEEEEECCCCEEEEEcCCCC------------------------EEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEE
Confidence 888888888999999997541 111121 223456778886 66777776675 9
Q ss_pred EEEecCCCCCCCCCCCccceeeeccCC--CCCeeEEEEeecCCccEEEEecCCCeEEEEEccCC
Q 017553 262 IVLWEPKMKEQSPGEGTADILQKYPVP--ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 323 (369)
Q Consensus 262 i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~ 323 (369)
|.+||.... .+..+..+ ...+..++++|+++ ++++ +.++.|++|++...
T Consensus 231 i~~~~~~g~----------~~~~~~~~~~~~~~~~i~~~~~g~--l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 231 LTIFTQDGQ----------LISALESKVKHAQCFDVALMDDGS--VVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEECTTSC----------EEEEEEESSCCSCEEEEEEETTTE--EEEE-ETTTEEEEEECSCC
T ss_pred EEEECCCCC----------EEEEEcccCCCCcceeEEECCCCc--EEEE-CCCCeEEEEEcccc
Confidence 999996432 23333332 23467899999984 5555 56899999998664
No 175
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.80 E-value=6e-17 Score=147.70 Aligned_cols=257 Identities=8% Similarity=-0.031 Sum_probs=154.7
Q ss_pred ecccCCcCeE---------EEEEe--eccCCCccE-EEEecCCc--EEEEEec-CC-ceeEEEeeeccCCcccceeEEEe
Q 017553 28 KLQEGKRPLY---------AVVFN--FIDSRYFNV-FATVGGNR--VTVYQCL-EG-GVIAALQSYVDEDKEESFYTVSW 91 (369)
Q Consensus 28 ~~~~h~~~v~---------~~~~s--~~~~~~~~~-la~~~~~~--v~iw~~~-~~-~~~~~~~~~~~~~~~~~v~~~~~ 91 (369)
.+..|...+. ...|+ | +|+. |+.++... |.++++. ++ .....+.......+...+..++|
T Consensus 62 ~l~~~~~~~~~~~~~~~~~~~~~~~SP----Dg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~ 137 (662)
T 3azo_A 62 SALPAPWNVRNRVFEYSGFPWAGVPRP----AGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVL 137 (662)
T ss_dssp ESSCTTCCBCCCGGGTCCCCEEEECCS----SSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEE
T ss_pred eeCCCCccccccccccCCccceeeeec----CCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEE
Confidence 4555665665 66666 7 5777 77766534 6666643 02 33444432211114556777888
Q ss_pred eecCCCccEEEEeecC----------CeEEEEEcCC------ccccceee-ccccceEEEEecCCCCceEEEEeCC----
Q 017553 92 ACNVDGIPFLVAGGIN----------GIIRVIDVSN------EKLHKSFV-GHGDSINEIRTQPLKPSLVVSASKD---- 150 (369)
Q Consensus 92 ~~~~~g~~~l~~~~~d----------g~i~vwd~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d---- 150 (369)
+ |||+ .|+.++.+ ..|++||+.+ ++. ..+. .+...+..++|+| +++.|+.++.+
T Consensus 138 s--pDg~-~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~Sp-DG~~la~~~~~~~~~ 212 (662)
T 3azo_A 138 L--PERG-EVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSP-DGRQAVWLAWDHPRM 212 (662)
T ss_dssp E--TTTT-EEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECT-TSSEEEEEEECTTCC
T ss_pred C--CCCC-EEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECC-CCCEEEEEECCCCCC
Confidence 7 9999 88877766 5899999987 543 4444 5567888999999 88888877755
Q ss_pred ----CcEEEEEcc-CC---cEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCC--cEEEEEccCceeeeeeeeeccCC
Q 017553 151 ----ESVRLWNVQ-TG---ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN--TVKIWSMKEFWTYVEKSFTWTDL 220 (369)
Q Consensus 151 ----g~i~vwd~~-~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~--~v~i~d~~~~~~~~~~~~~~~~~ 220 (369)
..|++||+. ++ +...... +|...+..+.|+| ++++++++..++ .|.+||+.+++... ... .
T Consensus 213 ~~~~~~i~~~d~~~~g~~~~~~~l~~---~~~~~~~~~~~sp-dg~l~~~~~~~~~~~l~~~~~~~~~~~~--l~~---~ 283 (662)
T 3azo_A 213 PWEGTELKTARVTEDGRFADTRTLLG---GPEEAIAQAEWAP-DGSLIVATDRTGWWNLHRVDPATGAATQ--LCR---R 283 (662)
T ss_dssp TTTCEEEEEEEECTTSCEEEEEEEEE---ETTBCEEEEEECT-TSCEEEEECTTSSCEEEEECTTTCCEEE--SSC---C
T ss_pred CCCCcEEEEEEECCCCcccccEEeCC---CCCceEcceEECC-CCeEEEEECCCCCeEEEEEECCCCceee--ccc---c
Confidence 379999998 56 3333333 4678899999999 777888888888 45555554422100 000 0
Q ss_pred CCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEEEe--cCCCCCCCCCCCccceeeeccCCCCCeeEEE
Q 017553 221 PSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLW--EPKMKEQSPGEGTADILQKYPVPECDIWFIK 296 (369)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~--d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 296 (369)
.. ....+ .-...+..++|+ +.+++++.. +.+++| |+.++ .+..+..+...+..+
T Consensus 284 ~~-----~~~~p-----~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~----------~~~~l~~~~~~~~~~- 341 (662)
T 3azo_A 284 EE-----EFAGP-----LWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESG----------ELVDAAGPWTEWAAT- 341 (662)
T ss_dssp SS-----BSSCC-----CCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTT----------EEEECCSSCCEEEEE-
T ss_pred cc-----cccCc-----cccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCC----------cEEEecCCCCeEEEE-
Confidence 00 00000 000013456664 667888887 999999 44433 244455555555544
Q ss_pred EeecCCccEEEEecCCC--eEEEEEccCCC
Q 017553 297 FSCDFHYNAAAIGNREG--KIFVWELQSSP 324 (369)
Q Consensus 297 ~s~~~~~~~l~~~~~dg--~i~i~d~~~~~ 324 (369)
++++++..++++++.+. .|.++|+.+++
T Consensus 342 ~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~ 371 (662)
T 3azo_A 342 LTVSGTRAVGVAASPRTAYEVVELDTVTGR 371 (662)
T ss_dssp EEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 26666644555555554 45555666664
No 176
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.79 E-value=7.9e-15 Score=120.05 Aligned_cols=281 Identities=10% Similarity=-0.018 Sum_probs=185.5
Q ss_pred cccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecC
Q 017553 29 LQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN 107 (369)
Q Consensus 29 ~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~d 107 (369)
+..+...+.+++++| +|+++++...++ |.+||.. +. ...+.. ......+..+++. ++|. ++++...+
T Consensus 10 ~~~~~~~~~~i~~d~----~g~l~v~~~~~~~v~~~d~~-~~-~~~~~~---~~~~~~~~~i~~~--~~g~-l~v~~~~~ 77 (299)
T 2z2n_A 10 LTNQDTGPYGITVSD----KGKVWITQHKANMISCINLD-GK-ITEYPL---PTPDAKVMCLTIS--SDGE-VWFTENAA 77 (299)
T ss_dssp CCSSSCCEEEEEECT----TSCEEEEETTTTEEEEECTT-CC-EEEEEC---SSTTCCEEEEEEC--TTSC-EEEEETTT
T ss_pred CCCcCCCccceEECC----CCCEEEEecCCCcEEEEcCC-CC-eEEecC---CcccCceeeEEEC--CCCC-EEEeCCCC
Confidence 445667899999998 578888776544 9999976 44 333221 1234567777776 8888 77776668
Q ss_pred CeEEEEEcCCccccceee--ccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCC
Q 017553 108 GIIRVIDVSNEKLHKSFV--GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS 185 (369)
Q Consensus 108 g~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 185 (369)
+.|..||.. ++. ..+. .....+..+++.+ ++.++++...++.|..||. +++....... .....+..+++.+
T Consensus 78 ~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~--~~~~~~~~i~~~~- 150 (299)
T 2z2n_A 78 NKIGRITKK-GII-KEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELP--NKGSYPSFITLGS- 150 (299)
T ss_dssp TEEEEECTT-SCE-EEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECS--STTCCEEEEEECT-
T ss_pred CeEEEECCC-CcE-EEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCC--CCCCCCceEEEcC-
Confidence 899999975 332 2222 2445789999999 7788887777889999998 5554432221 3456789999998
Q ss_pred CceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEE
Q 017553 186 DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIV 263 (369)
Q Consensus 186 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~ 263 (369)
++.++++...++.|..||. ++... ..........+..++++ +.+.++...++.|.
T Consensus 151 ~g~l~v~~~~~~~i~~~~~-~g~~~----------------------~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~ 207 (299)
T 2z2n_A 151 DNALWFTENQNNAIGRITE-SGDIT----------------------EFKIPTPASGPVGITKGNDDALWFVEIIGNKIG 207 (299)
T ss_dssp TSCEEEEETTTTEEEEECT-TCCEE----------------------EEECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred CCCEEEEeCCCCEEEEEcC-CCcEE----------------------EeeCCCCCCcceeEEECCCCCEEEEccCCceEE
Confidence 7787777766788999998 42210 00112233456677776 55655555678999
Q ss_pred EecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEE
Q 017553 264 LWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQT 343 (369)
Q Consensus 264 i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~ 343 (369)
+||. +++. ...........+..+++++++. +.++...++.|..||. +++ +..+....+...+.++
T Consensus 208 ~~~~-~g~~--------~~~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~d~-~g~---~~~~~~~~~~~~~~~i 272 (299)
T 2z2n_A 208 RITT-SGEI--------TEFKIPTPNARPHAITAGAGID--LWFTEWGANKIGRLTS-NNI---IEEYPIQIKSAEPHGI 272 (299)
T ss_dssp EECT-TCCE--------EEEECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEEET-TTE---EEEEECSSSSCCEEEE
T ss_pred EECC-CCcE--------EEEECCCCCCCceeEEECCCCC--EEEeccCCceEEEECC-CCc---eEEEeCCCCCCccceE
Confidence 9998 5431 1111222345688999999985 5555557789999998 342 2233222444678999
Q ss_pred EecCCCCEEEEeecCCeEEEEecCC
Q 017553 344 AMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 344 ~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
++ ++|+++++.+ .+.+..++.++
T Consensus 273 ~~-~~g~l~v~~~-~~~l~~~~~~~ 295 (299)
T 2z2n_A 273 CF-DGETIWFAME-CDKIGKLTLIK 295 (299)
T ss_dssp EE-CSSCEEEEET-TTEEEEEEEC-
T ss_pred Ee-cCCCEEEEec-CCcEEEEEcCc
Confidence 99 9998877665 56677777653
No 177
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.78 E-value=1.4e-15 Score=127.49 Aligned_cols=255 Identities=11% Similarity=-0.021 Sum_probs=161.7
Q ss_pred CeEEEEEeeccCCCccEEEEec---------CCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEe
Q 017553 35 PLYAVVFNFIDSRYFNVFATVG---------GNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG 104 (369)
Q Consensus 35 ~v~~~~~s~~~~~~~~~la~~~---------~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~ 104 (369)
.+...++ . |+.+|... .+. |.+|++.+++.. .+ ..+...+|+ |||+ .|+..
T Consensus 16 ~~~~~~~-d-----G~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l---------~~~~~~~~S--pDg~-~la~~ 76 (347)
T 2gop_A 16 YLSDPRT-K-----GELVAYVLTKANLKDNKYENTIVIENLKNNARR-FI---------ENATMPRIS--PDGK-KIAFM 76 (347)
T ss_dssp EEEEEEE-E-----TTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE-EE---------ESCEEEEEC--TTSS-EEEEE
T ss_pred EcccceE-C-----CcEEEEEEeecCcccCCccceEEEEeCCCCceE-Ec---------ccCCCeEEC--CCCC-EEEEE
Confidence 4566666 2 56666542 123 899998776543 22 245567777 9999 67666
Q ss_pred ecC---C--eEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCC---------------------------Cc
Q 017553 105 GIN---G--IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD---------------------------ES 152 (369)
Q Consensus 105 ~~d---g--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---------------------------g~ 152 (369)
+.+ + .|.+|++.+++...... +.. +..++|+| +++.|+.++.+ ..
T Consensus 77 ~~~~~~~~~~l~~~~~~~g~~~~l~~-~~~-~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 153 (347)
T 2gop_A 77 RANEEKKVSEIWVADLETLSSKKILE-AKN-IRSLEWNE-DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTT 153 (347)
T ss_dssp EEETTTTEEEEEEEETTTTEEEEEEE-ESE-EEEEEECT-TSSEEEEEEECCCC---------CCCC---------CEEE
T ss_pred EeccCCCcceEEEEECCCCceEEEEc-CCC-ccceeECC-CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccce
Confidence 543 3 48888888776554444 334 99999999 77777776532 57
Q ss_pred EEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCC-------cEEEEEccCceeeeeeeeeccCCCCCCC
Q 017553 153 VRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN-------TVKIWSMKEFWTYVEKSFTWTDLPSKFP 225 (369)
Q Consensus 153 i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-------~v~i~d~~~~~~~~~~~~~~~~~~~~~~ 225 (369)
|.+||+.+++.+..+. . . .+..+.|+| ++ +++++..+. ...+|.+.+++.
T Consensus 154 l~~~d~~~~~~~~~l~---~-~-~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~---------------- 210 (347)
T 2gop_A 154 FWIFDTESEEVIEEFE---K-P-RFSSGIWHR-DK-IVVNVPHREIIPQYFKFWDIYIWEDGKE---------------- 210 (347)
T ss_dssp EEEEETTTTEEEEEEE---E-E-TTCEEEEET-TE-EEEEEECCCSSCCSSCCEEEEEEETTEE----------------
T ss_pred EEEEECCCCeEEeeec---C-C-CcccccCCC-Ce-EEEEEecccccccccccccEEEeCCCce----------------
Confidence 9999999887755565 2 2 678899999 77 777775542 345554443210
Q ss_pred CceeecceeeeccCCCceeeeeeeCcEEEEeecC--------CeEEEecCCCCCCCCCCCccceeeeccCCCCCeeE-EE
Q 017553 226 TKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVD--------NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWF-IK 296 (369)
Q Consensus 226 ~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~ 296 (369)
..+..+ ..+..+..+|++++.++.+ ..|.+|| +++ .......+...+.. +.
T Consensus 211 --------~~l~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~---------~~~l~~~~~~~~~~~~~ 270 (347)
T 2gop_A 211 --------EKMFEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKE---------VMGILDEVDRGVGQAKI 270 (347)
T ss_dssp --------EEEEEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSC---------EEESSTTCCSEEEEEEE
T ss_pred --------EEeccC-cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCc---------eEeccccCCcccCCccE
Confidence 111112 2333344458877776644 3688888 332 22222334455665 88
Q ss_pred EeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeE-EEEec
Q 017553 297 FSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAI-WRWDA 366 (369)
Q Consensus 297 ~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i-~vw~~ 366 (369)
|+ ++ ++++++.++.+++| +.+++ .. .+. .+...|.+++|+| .++++++.++.. .||.+
T Consensus 271 ~s-dg---~~~~~~~~~~~~l~-~~~g~--~~-~~~--~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~ 329 (347)
T 2gop_A 271 KD-GK---VYFTLFEEGSVNLY-IWDGE--IK-PIA--KGRHWIMGFDVDE--IVVYLKETATRLRELFTW 329 (347)
T ss_dssp ET-TE---EEEEEEETTEEEEE-EESSS--EE-EEE--CSSSEEEEEEESS--SEEEEEECSSSCCEEEEE
T ss_pred Ec-Cc---EEEEEecCCcEEEE-EcCCc--eE-EEe--cCCCeEEeeeeeC--cEEEEEcCCCChHHheEe
Confidence 88 65 78888899999999 88543 22 232 3357899999999 677777777654 66654
No 178
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.77 E-value=7.9e-16 Score=127.56 Aligned_cols=262 Identities=9% Similarity=-0.034 Sum_probs=170.0
Q ss_pred cEEEEEecCCceeEEEeee-ccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEec
Q 017553 59 RVTVYQCLEGGVIAALQSY-VDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQ 137 (369)
Q Consensus 59 ~v~iw~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 137 (369)
.|.+||..+++....+... ...........+.+. +++ ++++...++.|.+||..+++.+.++. .......++++
T Consensus 18 ~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~---~~~-lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~ 92 (328)
T 3dsm_A 18 TLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR---DGI-GWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFL 92 (328)
T ss_dssp EEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE---TTE-EEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEE
T ss_pred eEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE---CCE-EEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEe
Confidence 3999999888765543210 001112234455542 344 66666778999999999999888885 34668899998
Q ss_pred CCCCceEEEEeCCCcEEEEEccCCcEEEEeeccC--CCCCcEEEEEecCCCceEEEEEe-eCCcEEEEEccCceeeeeee
Q 017553 138 PLKPSLVVSASKDESVRLWNVQTGICILIFAGAG--GHRNEVLSVDFHPSDIYRIASCG-MDNTVKIWSMKEFWTYVEKS 214 (369)
Q Consensus 138 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~ 214 (369)
+ ++.++++...++.|.+||..+++....+.... +.......+++ . ++.++++.. .++.|.++|+.+++...
T Consensus 93 ~-~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~--- 166 (328)
T 3dsm_A 93 S-DEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVD--- 166 (328)
T ss_dssp E-TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEE---
T ss_pred C-CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEE---
Confidence 8 66555555488999999999998887776311 01114556777 3 667666654 48899999999853221
Q ss_pred eeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecC----------CeEEEecCCCCCCCCCCCcccee
Q 017553 215 FTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVD----------NEIVLWEPKMKEQSPGEGTADIL 282 (369)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d----------~~i~i~d~~~~~~~~~~~~~~~~ 282 (369)
.+.. ......+.++ +++++++..+ +.|.++|..+.+ ..
T Consensus 167 --------------------~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~---------v~ 216 (328)
T 3dsm_A 167 --------------------ELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFT---------VE 216 (328)
T ss_dssp --------------------EEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTE---------EE
T ss_pred --------------------EEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCe---------EE
Confidence 1111 1123455555 5655555444 789999998765 33
Q ss_pred eeccCC-CCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecC-CCCEEEEe----e
Q 017553 283 QKYPVP-ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSY-DGSTILSC----C 356 (369)
Q Consensus 283 ~~~~~~-~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~----~ 356 (369)
..+... ......++++|+++ .|.++.. .|.+||..+++......+. ........++++| ++.++++. .
T Consensus 217 ~~~~~~~g~~p~~la~~~d~~--~lyv~~~--~v~~~d~~t~~~~~~~~~~--~~~~~p~gi~vdp~~g~lyva~~~~y~ 290 (328)
T 3dsm_A 217 KQFKFKLGDWPSEVQLNGTRD--TLYWINN--DIWRMPVEADRVPVRPFLE--FRDTKYYGLTVNPNNGEVYVADAIDYQ 290 (328)
T ss_dssp EEEECCTTCCCEEEEECTTSC--EEEEESS--SEEEEETTCSSCCSSCSBC--CCSSCEEEEEECTTTCCEEEEECTTSS
T ss_pred EEEecCCCCCceeEEEecCCC--EEEEEcc--EEEEEECCCCceeeeeeec--CCCCceEEEEEcCCCCeEEEEcccccc
Confidence 333332 23578899999887 5555443 8999999887532111111 1135688999999 55666665 5
Q ss_pred cCCeEEEEecC
Q 017553 357 EDGAIWRWDAI 367 (369)
Q Consensus 357 ~dg~i~vw~~~ 367 (369)
.++.|.+||..
T Consensus 291 ~~~~V~v~d~~ 301 (328)
T 3dsm_A 291 QQGIVYRYSPQ 301 (328)
T ss_dssp SEEEEEEECTT
T ss_pred cCCEEEEECCC
Confidence 78899999975
No 179
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.76 E-value=3.5e-17 Score=139.70 Aligned_cols=256 Identities=10% Similarity=-0.016 Sum_probs=155.5
Q ss_pred EEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEee-cC--CeEEEEEcCCccccceeeccccceEEEEecC
Q 017553 62 VYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG-IN--GIIRVIDVSNEKLHKSFVGHGDSINEIRTQP 138 (369)
Q Consensus 62 iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~-~d--g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 138 (369)
..|..++..+..+.......+...+..++|+ |+|+ .|+... .+ ..|.+||+.+++.......+......+.|+|
T Consensus 14 ~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~S--pdG~-~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~sp 90 (396)
T 3c5m_A 14 FVDSDTQVKVTRLTPTDIICHRNYFYQKCFT--QDGK-KLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFIST 90 (396)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBC--TTSC-EEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECT
T ss_pred eecCCCCcceEEEecCCCCccceeeecCcCC--CCCC-EEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECC
Confidence 3456666665555432111122235556776 9999 655543 32 4788899888765444333333333478999
Q ss_pred CCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEE-------------------EEecCCCceEEEEE-----e
Q 017553 139 LKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLS-------------------VDFHPSDIYRIASC-----G 194 (369)
Q Consensus 139 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~~l~~~-----~ 194 (369)
+++.|+.++.++.|++||+.+++...... .+...... ..|+| +++.++.. .
T Consensus 91 -dg~~l~~~~~~~~l~~~d~~~~~~~~~~~---~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~~~~ 165 (396)
T 3c5m_A 91 -DERAFFYVKNELNLMKVDLETLEEQVIYT---VDEEWKGYGTWVANSDCTKLVGIEILKRDWQP-LTSWEKFAEFYHTN 165 (396)
T ss_dssp -TSSEEEEEETTTEEEEEETTTCCEEEEEE---CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCC-CCSHHHHHHHHHTC
T ss_pred -CCCEEEEEEcCCcEEEEECCCCCcEEEEe---cccccCCCCCEEEeccCCccccccccccccCC-CCcceeeeeeccCC
Confidence 88999999999999999999887665554 23332222 24456 44444333 3
Q ss_pred eCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee---CcEEEEeecC------CeEEEe
Q 017553 195 MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVD------NEIVLW 265 (369)
Q Consensus 195 ~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d------~~i~i~ 265 (369)
.+..|.+||+.+++. ..+..+...+..+.|+ ++.++..+.+ ..|.+|
T Consensus 166 ~~~~l~~~d~~~g~~------------------------~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~ 221 (396)
T 3c5m_A 166 PTCRLIKVDIETGEL------------------------EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLV 221 (396)
T ss_dssp CCEEEEEEETTTCCE------------------------EEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEE
T ss_pred CcceEEEEECCCCcE------------------------EeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEE
Confidence 456788888877321 1112345566777775 3455555443 368888
Q ss_pred cCCCCCCCCCCCccceeeeccCC--CCCeeEEEEeecCCccEEEEecCC-----CeEEEEEccCCCceeEEEeecCCCcc
Q 017553 266 EPKMKEQSPGEGTADILQKYPVP--ECDIWFIKFSCDFHYNAAAIGNRE-----GKIFVWELQSSPPVLIARLSHAQSKS 338 (369)
Q Consensus 266 d~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~s~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~ 338 (369)
|+...+. ..+..+ ...+..++|+|+++ .|+.++.+ +.|++||+.+++...+..+. +
T Consensus 222 d~~~~~~----------~~l~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~--~--- 284 (396)
T 3c5m_A 222 NEDGSNV----------RKIKEHAEGESCTHEFWIPDGS--AMAYVSYFKGQTDRVIYKANPETLENEEVMVMP--P--- 284 (396)
T ss_dssp ETTSCCC----------EESSCCCTTEEEEEEEECTTSS--CEEEEEEETTTCCEEEEEECTTTCCEEEEEECC--S---
T ss_pred ECCCCce----------eEeeccCCCccccceEECCCCC--EEEEEecCCCCccceEEEEECCCCCeEEeeeCC--C---
Confidence 8765431 111111 23467789999997 44444322 45999999988644433322 1
Q ss_pred ceEEEEecC-CCCEEEEee----------------cCCeEEEEecCC
Q 017553 339 PIRQTAMSY-DGSTILSCC----------------EDGAIWRWDAIP 368 (369)
Q Consensus 339 ~v~~~~~s~-~~~~l~s~~----------------~dg~i~vw~~~~ 368 (369)
.. +.|+| ||++|++++ .++.|++||+.+
T Consensus 285 -~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~ 329 (396)
T 3c5m_A 285 -CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA 329 (396)
T ss_dssp -EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTT
T ss_pred -CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEeccc
Confidence 23 89999 999888764 347899999764
No 180
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.75 E-value=3.1e-15 Score=122.33 Aligned_cols=235 Identities=10% Similarity=-0.024 Sum_probs=156.3
Q ss_pred ceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEE
Q 017553 85 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICI 164 (369)
Q Consensus 85 ~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 164 (369)
....++|. |+|+.+++++..++.|+.|+..++ ...+..+...+.+++++| ++.++++...++.|.+||..+++..
T Consensus 29 ~~eg~~~d--~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~-dg~l~v~~~~~~~i~~~d~~~g~~~ 103 (296)
T 3e5z_A 29 WTEGPVYV--PARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNK-QGHLIACSHGLRRLERQREPGGEWE 103 (296)
T ss_dssp SEEEEEEE--GGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECT-TCCEEEEETTTTEEEEECSTTCCEE
T ss_pred cccCCeEe--CCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECC-CCcEEEEecCCCeEEEEcCCCCcEE
Confidence 34557777 888657888888999999998876 566666778899999999 8888877777789999999888765
Q ss_pred EEeeccCC-CCCcEEEEEecCCCceEEEEE----ee-------------CCcEEEEEccCceeeeeeeeeccCCCCCCCC
Q 017553 165 LIFAGAGG-HRNEVLSVDFHPSDIYRIASC----GM-------------DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPT 226 (369)
Q Consensus 165 ~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~----~~-------------d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~ 226 (369)
.......+ ....+..++++| +++++++. +. .+.|..++...
T Consensus 104 ~~~~~~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g-------------------- 162 (296)
T 3e5z_A 104 SIADSFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDG-------------------- 162 (296)
T ss_dssp EEECEETTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTS--------------------
T ss_pred EEeeccCCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCCC--------------------
Confidence 44331111 123467899999 88888873 21 23444444331
Q ss_pred ceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEEEecCC-CCCCCCCCCccceeeeccCCCCCeeEEEEeecCCc
Q 017553 227 KYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPK-MKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHY 303 (369)
Q Consensus 227 ~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 303 (369)
.......+......++|+ ++.+++.+.++.|.+|++. ++... .....+......+..+++++++.
T Consensus 163 -----~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~------~~~~~~~~~~~~p~~i~~d~~G~- 230 (296)
T 3e5z_A 163 -----TLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETE------YQGVHFTVEPGKTDGLRVDAGGL- 230 (296)
T ss_dssp -----CEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEE------EEEEEECCSSSCCCSEEEBTTSC-
T ss_pred -----CEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCc------CCCeEeeCCCCCCCeEEECCCCC-
Confidence 111223344556778886 6677777778999999987 22200 00111222345567899999995
Q ss_pred cEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEe-cCCCCEEEEeecCCeEEEEecC
Q 017553 304 NAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAM-SYDGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 304 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~s~~~dg~i~vw~~~ 367 (369)
+.++. ++.|.+||.. + ..+..+. .+.. +++++| +|+++.|++++.++ +.-++..
T Consensus 231 -l~v~~--~~~v~~~~~~-g--~~~~~~~--~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~ 285 (296)
T 3e5z_A 231 -IWASA--GDGVHVLTPD-G--DELGRVL--TPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETN 285 (296)
T ss_dssp -EEEEE--TTEEEEECTT-S--CEEEEEE--CSSC-CCEEEEESTTSCEEEEEETTE-EEEEECS
T ss_pred -EEEEc--CCeEEEECCC-C--CEEEEEE--CCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEcc
Confidence 44444 7899999986 4 2444554 3334 889999 58999888888764 4444443
No 181
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.75 E-value=1.5e-15 Score=122.53 Aligned_cols=237 Identities=10% Similarity=-0.007 Sum_probs=157.0
Q ss_pred ceeEEEeeecCCCccEEE-EeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcE
Q 017553 85 SFYTVSWACNVDGIPFLV-AGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC 163 (369)
Q Consensus 85 ~v~~~~~~~~~~g~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 163 (369)
....+++. ++|. +++ +...++.|.+|+..+.........+...+.++++.+ ++.++++.. ++.|.+||...+..
T Consensus 25 ~p~~i~~~--~~g~-l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~ 99 (270)
T 1rwi_B 25 SPSGVAVD--SAGN-VYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQ 99 (270)
T ss_dssp CEEEEEEC--TTCC-EEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCC
T ss_pred CccceEEC--CCCC-EEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceE
Confidence 44456666 8898 666 557789999999765443222122335678999999 777666655 88999999876543
Q ss_pred EEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCce
Q 017553 164 ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV 243 (369)
Q Consensus 164 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 243 (369)
. .+.. .....+..++++| +++++++...++.|.+|+..+... ..........+
T Consensus 100 ~-~~~~--~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~-----------------------~~~~~~~~~~p 152 (270)
T 1rwi_B 100 T-VLPF--DGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQ-----------------------TVLPFTGLNDP 152 (270)
T ss_dssp E-ECCC--CSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTCCSC-----------------------EECCCCSCCSC
T ss_pred e-eeec--CCcCCCcceEECC-CCCEEEEECCCCEEEEEECCCcee-----------------------EeeccccCCCc
Confidence 3 2321 2335789999999 778787777788999997554211 01111122345
Q ss_pred eeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEcc
Q 017553 244 DCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ 321 (369)
Q Consensus 244 ~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~ 321 (369)
..++++ ++++++...++.|.+||...... ..........+..+++++++. ++++...++.|.+||..
T Consensus 153 ~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~---------~~~~~~~~~~p~~i~~d~~g~--l~v~~~~~~~v~~~~~~ 221 (270)
T 1rwi_B 153 DGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ---------VVLPFTDITAPWGIAVDEAGT--VYVTEHNTNQVVKLLAG 221 (270)
T ss_dssp CCEEECTTCCEEEEEGGGTEEEEECTTTCCE---------EECCCSSCCSEEEEEECTTCC--EEEEETTTSCEEEECTT
T ss_pred eeEEEeCCCCEEEEECCCCEEEEEecCCCce---------EeecccCCCCceEEEECCCCC--EEEEECCCCcEEEEcCC
Confidence 667776 66666666678999999876541 111112225678899999884 66666778899999987
Q ss_pred CCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 322 SSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
..... . ... .+...+.+++++++|+++++...++.|+++++..
T Consensus 222 ~~~~~--~-~~~-~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~ 264 (270)
T 1rwi_B 222 STTST--V-LPF-TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE 264 (270)
T ss_dssp CSCCE--E-CCC-CSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred CCcce--e-ecc-CCCCCceeEEECCCCCEEEEECCCCEEEEEcCCC
Confidence 65321 1 211 2235689999999999999999999999999764
No 182
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.75 E-value=2.3e-15 Score=138.65 Aligned_cols=299 Identities=12% Similarity=0.032 Sum_probs=174.6
Q ss_pred eeecccCCcC-----eEEEEEeeccCCCccEEEEecCC---------c-EEEEEecCCceeEEEeeeccCCcccceeEEE
Q 017553 26 TNKLQEGKRP-----LYAVVFNFIDSRYFNVFATVGGN---------R-VTVYQCLEGGVIAALQSYVDEDKEESFYTVS 90 (369)
Q Consensus 26 ~~~~~~h~~~-----v~~~~~s~~~~~~~~~la~~~~~---------~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~ 90 (369)
...+.+|... ...++||| ||+.|+.++.+ + +.+||+.+++... +. .+...+...+
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~Sp----dg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~-----~~~~~~~~~~ 118 (740)
T 4a5s_A 49 SVFLENSTFDEFGHSINDYSISP----DGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EE-----RIPNNTQWVT 118 (740)
T ss_dssp EEEECTTTTTTCCSCCCEEEECT----TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-SS-----CCCTTEEEEE
T ss_pred EEEEechhhhhhcccccceEECC----CCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-cc-----cCCCcceeeE
Confidence 3445555533 34478899 68999988874 3 7799988876432 22 3455778888
Q ss_pred eeecCCCccEEEEeecCCeEEEEEcCCccccce-eeccccce-----------------EEEEecCCCCceEEEEeCCC-
Q 017553 91 WACNVDGIPFLVAGGINGIIRVIDVSNEKLHKS-FVGHGDSI-----------------NEIRTQPLKPSLVVSASKDE- 151 (369)
Q Consensus 91 ~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~v-----------------~~~~~~~~~~~~l~s~~~dg- 151 (369)
|+ |||+ .|+.+ .++.|++|++.+++..+. ..++...+ ..+.|+| |++.|+.++.|.
T Consensus 119 ~S--PdG~-~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSp-Dg~~la~~~~d~~ 193 (740)
T 4a5s_A 119 WS--PVGH-KLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP-NGTFLAYAQFNDT 193 (740)
T ss_dssp EC--SSTT-CEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT-TSSEEEEEEEECT
T ss_pred EC--CCCC-EEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECC-CCCEEEEEEEccc
Confidence 88 9999 77776 468999999987764332 12232222 3589999 888888875332
Q ss_pred -----------------------------------cEEEEEccC---Cc--EEEEeecc---CCCCCcEEEEEecCCCce
Q 017553 152 -----------------------------------SVRLWNVQT---GI--CILIFAGA---GGHRNEVLSVDFHPSDIY 188 (369)
Q Consensus 152 -----------------------------------~i~vwd~~~---~~--~~~~~~~~---~~~~~~v~~~~~~~~~~~ 188 (369)
.|++||+.+ ++ ....+... .+|...+..++|+| +++
T Consensus 194 ~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~ 272 (740)
T 4a5s_A 194 EVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-QER 272 (740)
T ss_dssp TCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-TTE
T ss_pred CCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC-CCe
Confidence 478899888 73 22333310 02777899999999 777
Q ss_pred EEEEEeeC----CcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCcee-----eeeee--CcEEE-Ee
Q 017553 189 RIASCGMD----NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD-----CNRWL--GDFIL-SK 256 (369)
Q Consensus 189 ~l~~~~~d----~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-----~~~~~--~~~l~-~~ 256 (369)
.++..... ..|++||+.+++..... ..........|...+. ...|+ |+.++ ..
T Consensus 273 ~~~~~~~r~~~~~~i~~~d~~tg~~~~~~---------------~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~ 337 (740)
T 4a5s_A 273 ISLQWLRRIQNYSVMDICDYDESSGRWNC---------------LVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKII 337 (740)
T ss_dssp EEEEEEESSTTEEEEEEEEEETTTTEEEE---------------CGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEE
T ss_pred EEEEEeCCCCCEEEEEEEECCCCccccce---------------eEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEE
Confidence 66655432 36999999885300000 0000011133444433 56676 66655 55
Q ss_pred e-cCC--eEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecC----CCeEEEEEccCCCceeEE
Q 017553 257 S-VDN--EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR----EGKIFVWELQSSPPVLIA 329 (369)
Q Consensus 257 ~-~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~ 329 (369)
+ .+| .|++||+.+++ ...+......+..+. .++++ .+++++.. .+...||.+.........
T Consensus 338 s~~~G~~~l~~~~~~~~~----------~~~lT~g~~~v~~~~-~~d~~-~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~ 405 (740)
T 4a5s_A 338 SNEEGYRHICYFQIDKKD----------CTFITKGTWEVIGIE-ALTSD-YLYYISNEYKGMPGGRNLYKIQLIDYTKVT 405 (740)
T ss_dssp ECTTSCEEEEEEETTCSS----------CEESCCSSSCEEEEE-EECSS-EEEEEESCGGGCTTCBEEEEEETTEEEEEE
T ss_pred EcCCCceEEEEEECCCCc----------eEecccCCEEEEEEE-EEeCC-EEEEEEecCCCCCceeEEEEEECCCCCcce
Confidence 4 344 58888887654 222222233444433 35554 34445544 344555554433212222
Q ss_pred EeecC--CCccceEEEEecCCCCEEEEeecC---CeEEEEecC
Q 017553 330 RLSHA--QSKSPIRQTAMSYDGSTILSCCED---GAIWRWDAI 367 (369)
Q Consensus 330 ~~~~~--~~~~~v~~~~~s~~~~~l~s~~~d---g~i~vw~~~ 367 (369)
.+... +....+..+.|+|++++++..... ..+.+++..
T Consensus 406 ~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~ 448 (740)
T 4a5s_A 406 CLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSV 448 (740)
T ss_dssp ESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETT
T ss_pred eeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECC
Confidence 33311 233578899999999987655433 356666654
No 183
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.75 E-value=8.1e-15 Score=134.48 Aligned_cols=242 Identities=10% Similarity=-0.014 Sum_probs=155.6
Q ss_pred ceeEEEeeecCCCccEEEEeecC-C----eEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCc-------
Q 017553 85 SFYTVSWACNVDGIPFLVAGGIN-G----IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDES------- 152 (369)
Q Consensus 85 ~v~~~~~~~~~~g~~~l~~~~~d-g----~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~------- 152 (369)
.+..++|+ |||+ +|+.+..+ | .|++||+.+++.......+ ..+..++|+| +++.|+.++.++.
T Consensus 126 ~~~~~~~S--PDg~-~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 126 ALRGYAFS--EDGE-YFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTH-DGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp EEEEEEEC--TTSS-EEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECT-TSSEEEEEECCCCSSCCSSS
T ss_pred EEEEEEEC--CCCC-EEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEe-CCCEEEEEEECCcccccccc
Confidence 46666666 9999 66655443 3 8999999998876543322 2367899999 8888888887766
Q ss_pred ---------EEEEEccCCcE--EEEeeccCCCCCcEEEEEecCCCceEEEEEee-----CCcEEEEEccC------ceee
Q 017553 153 ---------VRLWNVQTGIC--ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM-----DNTVKIWSMKE------FWTY 210 (369)
Q Consensus 153 ---------i~vwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----d~~v~i~d~~~------~~~~ 210 (369)
|++|++.+++. ...+. ...|...+..+.|+| ++++|+..+. +..|++||+.+ +..
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~-~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~- 277 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAE-FPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL- 277 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEEC-CTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC-
T ss_pred ccccCCCCEEEEEECCCCcccceEEec-cCCCCeEEEEEEEcC-CCCEEEEEEEccCCCccEEEEEECcccccccCCcc-
Confidence 99999988762 22222 113556688999999 7777777665 56899999875 210
Q ss_pred eeeeeeccCCCCCCCCceeecceeeeccCCCceee-eeeeCcEEEEeecC----CeEEEecCCCCCCCCCCCccceeeec
Q 017553 211 VEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDC-NRWLGDFILSKSVD----NEIVLWEPKMKEQSPGEGTADILQKY 285 (369)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~ 285 (369)
....+..+...+.. +..+|+.|+..+.. +.|.+||+.+.... ....+
T Consensus 278 ---------------------~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~-------~~~~l 329 (710)
T 2xdw_A 278 ---------------------KWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEES-------KWKVL 329 (710)
T ss_dssp ---------------------CCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGG-------GCEEE
T ss_pred ---------------------ceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc-------cceec
Confidence 12222333333333 22237766655543 36999998765310 11222
Q ss_pred cCCC--CCeeEEEEeecCCccEEEEecCCCe--EEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEee----c
Q 017553 286 PVPE--CDIWFIKFSCDFHYNAAAIGNREGK--IFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCC----E 357 (369)
Q Consensus 286 ~~~~--~~i~~~~~s~~~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~----~ 357 (369)
..+. ..+..++|++++. ++++...++. |.+||+.+++ ....+. .+.+.+..+.++|++..|+... .
T Consensus 330 ~~~~~~~~~~~~~~~~~~~--lv~~~~~~g~~~l~~~~~~~g~--~~~~l~--~~~~~v~~~~~s~d~~~l~~~~ss~~~ 403 (710)
T 2xdw_A 330 VPEHEKDVLEWVACVRSNF--LVLCYLHDVKNTLQLHDLATGA--LLKIFP--LEVGSVVGYSGQKKDTEIFYQFTSFLS 403 (710)
T ss_dssp ECCCSSCEEEEEEEETTTE--EEEEEEETTEEEEEEEETTTCC--EEEEEC--CCSSEEEEEECCTTCSEEEEEEECSSC
T ss_pred cCCCCCCeEEEEEEEcCCE--EEEEEEECCEEEEEEEECCCCC--EEEecC--CCCceEEEEecCCCCCEEEEEEeCCCC
Confidence 2222 2577788886553 7777878875 5666765663 344455 4457788999999997666332 4
Q ss_pred CCeEEEEecCC
Q 017553 358 DGAIWRWDAIP 368 (369)
Q Consensus 358 dg~i~vw~~~~ 368 (369)
.+.|++||+.+
T Consensus 404 P~~i~~~d~~t 414 (710)
T 2xdw_A 404 PGIIYHCDLTK 414 (710)
T ss_dssp CCEEEEEETTS
T ss_pred CCEEEEEECCC
Confidence 57899999864
No 184
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.75 E-value=9.6e-14 Score=122.44 Aligned_cols=310 Identities=11% Similarity=0.062 Sum_probs=193.7
Q ss_pred ceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEec--CCceeEEEeeeccCCcccceeEEEeee--cCC
Q 017553 22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCL--EGGVIAALQSYVDEDKEESFYTVSWAC--NVD 96 (369)
Q Consensus 22 ~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~ 96 (369)
..+.+.++.. ...+..++|+| +|+++++++.++ |.+||+. +++.+..+.. ......++++. .||
T Consensus 186 t~~v~~~i~~-g~~p~~v~~Sp----DGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~------G~~P~~ia~s~~~~pD 254 (567)
T 1qks_A 186 TYEIKTVLDT-GYAVHISRLSA----SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI------GSEARSIETSKMEGWE 254 (567)
T ss_dssp TCCEEEEEEC-SSCEEEEEECT----TSCEEEEEETTSEEEEEETTSSSCCEEEEEEC------CSEEEEEEECCSTTCT
T ss_pred CCeEEEEEeC-CCCccceEECC----CCCEEEEEcCCCeEEEEECCCCCCcEeEEEec------CCCCceeEEccccCCC
Confidence 3445555542 33577999999 688888888777 9999985 7777666652 12233455540 049
Q ss_pred CccEEEEeecCCeEEEEEcCCccccceeec----------ccc-ceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEE
Q 017553 97 GIPFLVAGGINGIIRVIDVSNEKLHKSFVG----------HGD-SINEIRTQPLKPSLVVSASKDESVRLWNVQTGICIL 165 (369)
Q Consensus 97 g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~----------~~~-~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 165 (369)
|+.++++...++.|.++|..+.+.++.+.. |.. .+..+..++....+++....+|.|.++|....+.+.
T Consensus 255 Gk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~ 334 (567)
T 1qks_A 255 DKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLK 334 (567)
T ss_dssp TTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEE
T ss_pred CCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccce
Confidence 984444455669999999999888776652 222 577888888556667777778999999988764333
Q ss_pred EeeccCCCCCcEEEEEecCCCceEEEE-EeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCcee
Q 017553 166 IFAGAGGHRNEVLSVDFHPSDIYRIAS-CGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD 244 (369)
Q Consensus 166 ~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 244 (369)
.... .......++.|+| +++++++ ...++.|.++|..+++...... +-....|+..-.
T Consensus 335 v~~i--~~~~~~~d~~~~p-dgr~~~va~~~sn~V~ViD~~t~kl~~~i~------------------vgg~~Phpg~g~ 393 (567)
T 1qks_A 335 TTEI--SAERFLHDGGLDG-SHRYFITAANARNKLVVIDTKEGKLVAIED------------------TGGQTPHPGRGA 393 (567)
T ss_dssp EEEE--ECCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEE------------------CSSSSBCCTTCE
T ss_pred eeee--eccccccCceECC-CCCEEEEEeCCCCeEEEEECCCCcEEEEEe------------------ccCcCCCCccce
Confidence 2221 2445677899999 6666555 4567899999999854221110 000112332111
Q ss_pred eeeee--Cc-EEEEee-cCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecC-------CC
Q 017553 245 CNRWL--GD-FILSKS-VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR-------EG 313 (369)
Q Consensus 245 ~~~~~--~~-~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~-------dg 313 (369)
.+ ++ +. ..+++. .++.|.++|..+.+.. ....+.++.+......-..+..+|+++ ++.+... .+
T Consensus 394 ~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~--~~~~kvv~~i~~~g~g~~~i~~~p~~~--~l~v~~~~~~~~~~~~ 468 (567)
T 1qks_A 394 NF-VHPTFGPVWATSHMGDDSVALIGTDPEGHP--DNAWKILDSFPALGGGSLFIKTHPNSQ--YLYVDATLNPEAEISG 468 (567)
T ss_dssp EE-EETTTEEEEEEEBSSSSEEEEEECCTTTCT--TTBTSEEEEEECSCSCCCCEECCTTCS--EEEEECTTCSSHHHHT
T ss_pred ee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCc--cccCEEEEEEecCCCCCEEEEeCCCCC--eEEEecCCCCCcccCc
Confidence 11 22 23 334443 4689999998874321 111335666665444445678899997 5555442 46
Q ss_pred eEEEEEccCCC----ceeEEEeec------CCCccceEEEEecCCCCEEEEeec-----CCeEEEEecCC
Q 017553 314 KIFVWELQSSP----PVLIARLSH------AQSKSPIRQTAMSYDGSTILSCCE-----DGAIWRWDAIP 368 (369)
Q Consensus 314 ~i~i~d~~~~~----~~~~~~~~~------~~~~~~v~~~~~s~~~~~l~s~~~-----dg~i~vw~~~~ 368 (369)
.|.++|+.+.+ ......+.. ......+..+.|+|+|+.+..+.. ++.|.|+|.++
T Consensus 469 ~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t 538 (567)
T 1qks_A 469 SVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKT 538 (567)
T ss_dssp CEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTT
T ss_pred eEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCC
Confidence 89999998761 112222220 112357889999999998776643 78999999765
No 185
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.74 E-value=1.9e-15 Score=138.31 Aligned_cols=276 Identities=11% Similarity=0.005 Sum_probs=165.5
Q ss_pred CccEEEEecCC----cEEEEEec--CCceeEEEeeec--cCCcccceeEEEeeecCCCccEEE-----EeecCCeEEEEE
Q 017553 48 YFNVFATVGGN----RVTVYQCL--EGGVIAALQSYV--DEDKEESFYTVSWACNVDGIPFLV-----AGGINGIIRVID 114 (369)
Q Consensus 48 ~~~~la~~~~~----~v~iw~~~--~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~g~~~l~-----~~~~dg~i~vwd 114 (369)
+|++++....+ .-.||... .+. ...+-... ...+...+..++|+ |||+ +|+ .|+.+..|++||
T Consensus 78 dG~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~l~d~~~~a~~~~~~~~~~~~S--PDG~-~la~~~~~~G~~~~~i~v~d 153 (695)
T 2bkl_A 78 RNGRFFYVRTHKDKEKAILYWRQGESGQ-EKVLLDPNGWSKDGTVSLGTWAVS--WDGK-KVAFAQKPNAADEAVLHVID 153 (695)
T ss_dssp ETTEEEEEEECTTCSSCEEEEEESTTSC-CEEEECGGGSSSSSCEEEEEEEEC--TTSS-EEEEEEEETTCSCCEEEEEE
T ss_pred ECCEEEEEEEcCCCeEEEEEEEcCCCCC-cEEEEchHHhccCCCEEEEEEEEC--CCCC-EEEEEECCCCCceEEEEEEE
Confidence 57776655432 24455443 333 23332111 11233456667776 9999 666 344456899999
Q ss_pred cCCcccc-ceeeccccceEEEEecCCCCceEEEEeCCCc-------------EEEEEccCCcE--EEEeeccCCCCCcEE
Q 017553 115 VSNEKLH-KSFVGHGDSINEIRTQPLKPSLVVSASKDES-------------VRLWNVQTGIC--ILIFAGAGGHRNEVL 178 (369)
Q Consensus 115 ~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~-------------i~vwd~~~~~~--~~~~~~~~~~~~~v~ 178 (369)
+.+++.+ ...... .....++|+| +++.|+.++.|.. |++|++.+++. ...+. ...+...+.
T Consensus 154 l~tg~~~~~~~~~~-~~~~~~~wsp-Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~-~~~~~~~~~ 230 (695)
T 2bkl_A 154 VDSGEWSKVDVIEG-GKYATPKWTP-DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHE-RTGDPTTFL 230 (695)
T ss_dssp TTTCCBCSSCCBSC-CTTCCCEECT-TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEEC-CCCCTTCEE
T ss_pred CCCCCCcCCcccCc-ccccceEEec-CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEe-cCCCCEEEE
Confidence 9998865 211111 1126899999 8888888888776 99999988762 22222 114556789
Q ss_pred EEEecCCCceEEEEEeeCC----cEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee-CcEE
Q 017553 179 SVDFHPSDIYRIASCGMDN----TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFI 253 (369)
Q Consensus 179 ~~~~~~~~~~~l~~~~~d~----~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l 253 (369)
.+.|+| ++++|+..+.++ .|.+|+..++ ....+..+...+....+. ++ +
T Consensus 231 ~~~~Sp-DG~~l~~~~~~~~~~~~l~~~~~~~~------------------------~~~~l~~~~~~~~~~~~~~g~-l 284 (695)
T 2bkl_A 231 QSDLSR-DGKYLFVYILRGWSENDVYWKRPGEK------------------------DFRLLVKGVGAKYEVHAWKDR-F 284 (695)
T ss_dssp EEEECT-TSCCEEEEEEETTTEEEEEEECTTCS------------------------SCEEEEECSSCCEEEEEETTE-E
T ss_pred EEEECC-CCCEEEEEEeCCCCceEEEEEcCCCC------------------------ceEEeecCCCceEEEEecCCc-E
Confidence 999999 777777777665 5666654331 112222333333333343 56 4
Q ss_pred EEeec----CCeEEEecCCCCCCCCCCCccceeeeccCC-CCCeeEEEEeecCCccEEEEecCCCeEEEEEcc-CCCcee
Q 017553 254 LSKSV----DNEIVLWEPKMKEQSPGEGTADILQKYPVP-ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ-SSPPVL 327 (369)
Q Consensus 254 ~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~ 327 (369)
+..+. ++.|.+||+.++... . .......+ ...+..++++ ++ .++++...|+..++|.+. +++ .
T Consensus 285 ~~~s~~~~~~~~l~~~d~~~~~~~----~--~~~l~~~~~~~~l~~~~~~-~~--~lv~~~~~dg~~~l~~~~~~g~--~ 353 (695)
T 2bkl_A 285 YVLTDEGAPRQRVFEVDPAKPARA----S--WKEIVPEDSSASLLSVSIV-GG--HLSLEYLKDATSEVRVATLKGK--P 353 (695)
T ss_dssp EEEECTTCTTCEEEEEBTTBCSGG----G--CEEEECCCSSCEEEEEEEE-TT--EEEEEEEETTEEEEEEEETTCC--E
T ss_pred EEEECCCCCCCEEEEEeCCCCCcc----C--CeEEecCCCCCeEEEEEEE-CC--EEEEEEEECCEEEEEEEeCCCC--e
Confidence 44443 578999998765310 0 01111122 3456777887 44 378888889988888766 232 3
Q ss_pred EEEeecCCCccceEEEEecCCCCEEE----EeecCCeEEEEecCC
Q 017553 328 IARLSHAQSKSPIRQTAMSYDGSTIL----SCCEDGAIWRWDAIP 368 (369)
Q Consensus 328 ~~~~~~~~~~~~v~~~~~s~~~~~l~----s~~~dg~i~vw~~~~ 368 (369)
...+.. ...+.+..+.++|+++.|+ +....+.|++||+.+
T Consensus 354 ~~~l~~-~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~ 397 (695)
T 2bkl_A 354 VRTVQL-PGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVST 397 (695)
T ss_dssp EEECCC-SSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTT
T ss_pred eEEecC-CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence 334431 2246788899999998777 333457899999864
No 186
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.74 E-value=3.7e-15 Score=119.92 Aligned_cols=219 Identities=12% Similarity=0.066 Sum_probs=156.3
Q ss_pred CccEEEEeecCCeEEEEEcCCccccceeeccc-cceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCC
Q 017553 97 GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHG-DSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRN 175 (369)
Q Consensus 97 g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 175 (369)
++ +|++++.++.|++||.++++.+.++..+. ..+.++.++| ++++++ +.++.|..||. +++.+..+.. +...
T Consensus 5 ~~-~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~--~~~~ 77 (276)
T 3no2_A 5 QH-LLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAA--PAGC 77 (276)
T ss_dssp CE-EEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEEC--CTTC
T ss_pred Cc-EEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcC--CCCc
Confidence 45 89999999999999998999999998765 4789999999 888888 45678999999 8999999883 2235
Q ss_pred cEEEEEecCCCceEEEEEee-CCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeee--eCcE
Q 017553 176 EVLSVDFHPSDIYRIASCGM-DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW--LGDF 252 (369)
Q Consensus 176 ~v~~~~~~~~~~~~l~~~~~-d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~ 252 (369)
.+.++.+.| +++++++.+. ++.|..+|.. ++........ . ....+......+.+ +|++
T Consensus 78 ~~~~~~~~~-dG~~lv~~~~~~~~v~~vd~~-Gk~l~~~~~~--~---------------~~~~~~~~~~~v~~~~~G~~ 138 (276)
T 3no2_A 78 EMQTARILP-DGNALVAWCGHPSTILEVNMK-GEVLSKTEFE--T---------------GIERPHAQFRQINKNKKGNY 138 (276)
T ss_dssp EEEEEEECT-TSCEEEEEESTTEEEEEECTT-SCEEEEEEEC--C---------------SCSSGGGSCSCCEECTTSCE
T ss_pred cccccEECC-CCCEEEEecCCCCEEEEEeCC-CCEEEEEecc--C---------------CCCcccccccCceECCCCCE
Confidence 788999999 8888888776 6777777753 3322221110 0 00011112222333 3889
Q ss_pred EEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEee
Q 017553 253 ILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLS 332 (369)
Q Consensus 253 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 332 (369)
+++...++.|..||.. ++ .+.++... .....+...+++. +++++..+++|..+|..+++ .+.++.
T Consensus 139 lv~~~~~~~v~~~d~~-G~---------~~w~~~~~-~~~~~~~~~~~g~--~~v~~~~~~~v~~~d~~tG~--~~w~~~ 203 (276)
T 3no2_A 139 LVPLFATSEVREIAPN-GQ---------LLNSVKLS-GTPFSSAFLDNGD--CLVACGDAHCFVQLNLESNR--IVRRVN 203 (276)
T ss_dssp EEEETTTTEEEEECTT-SC---------EEEEEECS-SCCCEEEECTTSC--EEEECBTTSEEEEECTTTCC--EEEEEE
T ss_pred EEEecCCCEEEEECCC-CC---------EEEEEECC-CCccceeEcCCCC--EEEEeCCCCeEEEEeCcCCc--EEEEec
Confidence 9999999999999988 65 45555443 3455677788885 88888888899999999885 445544
Q ss_pred cC----CCccceEEEEecCCCCEEEEee
Q 017553 333 HA----QSKSPIRQTAMSYDGSTILSCC 356 (369)
Q Consensus 333 ~~----~~~~~v~~~~~s~~~~~l~s~~ 356 (369)
.. .....+..++..++|.++++..
T Consensus 204 ~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 204 ANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp GGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred CCCCCCccccccccceEcCCCCEEEEec
Confidence 11 1123478888999999888773
No 187
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.74 E-value=4.4e-14 Score=124.57 Aligned_cols=275 Identities=8% Similarity=0.014 Sum_probs=184.0
Q ss_pred ccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcC--Cccccceee
Q 017553 49 FNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVS--NEKLHKSFV 125 (369)
Q Consensus 49 ~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~--~~~~~~~~~ 125 (369)
+.++++...++ |.++|..+++.+..+.. ...+..+.++ |||+ ++++++.++.|.+||+. +++.+.++.
T Consensus 167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~~------g~~p~~v~~S--pDGr-~lyv~~~dg~V~viD~~~~t~~~v~~i~ 237 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGSTYEIKTVLDT------GYAVHISRLS--ASGR-YLFVIGRDGKVNMIDLWMKEPTTVAEIK 237 (567)
T ss_dssp GEEEEEETTTTEEEEEETTTCCEEEEEEC------SSCEEEEEEC--TTSC-EEEEEETTSEEEEEETTSSSCCEEEEEE
T ss_pred ceEEEEeCCCCeEEEEECCCCeEEEEEeC------CCCccceEEC--CCCC-EEEEEcCCCeEEEEECCCCCCcEeEEEe
Confidence 45555666666 99999999988887763 2244556666 9999 88888999999999995 777777777
Q ss_pred ccccceEEEEec----CCCCceEEEEe-CCCcEEEEEccCCcEEEEeeccC-------CCCC-cEEEEEecCCCceEEEE
Q 017553 126 GHGDSINEIRTQ----PLKPSLVVSAS-KDESVRLWNVQTGICILIFAGAG-------GHRN-EVLSVDFHPSDIYRIAS 192 (369)
Q Consensus 126 ~~~~~v~~~~~~----~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~-------~~~~-~v~~~~~~~~~~~~l~~ 192 (369)
... ....++|+ | +++++++++ .+++|.++|..+.+.+..+.... .|.. .+..+..++.+..+++.
T Consensus 238 ~G~-~P~~ia~s~~~~p-DGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~ 315 (567)
T 1qks_A 238 IGS-EARSIETSKMEGW-EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVN 315 (567)
T ss_dssp CCS-EEEEEEECCSTTC-TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEE
T ss_pred cCC-CCceeEEccccCC-CCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEE
Confidence 533 46799999 6 666666554 56999999999999988776321 0222 67888888855677777
Q ss_pred EeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEee-cCCeEEEecCCC
Q 017553 193 CGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS-VDNEIVLWEPKM 269 (369)
Q Consensus 193 ~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~-~d~~i~i~d~~~ 269 (369)
...+|.|.++|........ +..+ ........+.|+ +++++++. .++.|.++|+.+
T Consensus 316 ~~~~g~v~~vd~~~~~~~~---------------------v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t 373 (567)
T 1qks_A 316 VKETGKILLVDYTDLNNLK---------------------TTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE 373 (567)
T ss_dssp ETTTTEEEEEETTCSSEEE---------------------EEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred ecCCCeEEEEecCCCccce---------------------eeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCC
Confidence 7778999999987632110 1111 122344556675 67766554 678999999998
Q ss_pred CCCCCCCCccceeeeccC-CC--CCeeEEE-EeecCCccEEEEec-CCCeEEEEEccCCC-----ceeEEEeecCCCccc
Q 017553 270 KEQSPGEGTADILQKYPV-PE--CDIWFIK-FSCDFHYNAAAIGN-REGKIFVWELQSSP-----PVLIARLSHAQSKSP 339 (369)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~-~~--~~i~~~~-~s~~~~~~~l~~~~-~dg~i~i~d~~~~~-----~~~~~~~~~~~~~~~ 339 (369)
++ .+..... .. .+-..+. ++|++. .+.+++. .++.|.++|..+.+ .+.+..+...+ ..
T Consensus 374 ~k---------l~~~i~vgg~~Phpg~g~~~~~p~~g-~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g--~g 441 (567)
T 1qks_A 374 GK---------LVAIEDTGGQTPHPGRGANFVHPTFG-PVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALG--GG 441 (567)
T ss_dssp TE---------EEEEEECSSSSBCCTTCEEEEETTTE-EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC--SC
T ss_pred Cc---------EEEEEeccCcCCCCccceeeECCCCC-cEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCC--CC
Confidence 76 2322222 11 1111223 567654 2444443 56899999998732 34566666222 23
Q ss_pred eEEEEecCCCCEEEEeec-------CCeEEEEecCC
Q 017553 340 IRQTAMSYDGSTILSCCE-------DGAIWRWDAIP 368 (369)
Q Consensus 340 v~~~~~s~~~~~l~s~~~-------dg~i~vw~~~~ 368 (369)
-..+..+|++++|.+... .+.|.|+|+.+
T Consensus 442 ~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~ 477 (567)
T 1qks_A 442 SLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKA 477 (567)
T ss_dssp CCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGG
T ss_pred CEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCc
Confidence 244778999999888663 35899999864
No 188
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.72 E-value=8.4e-14 Score=115.86 Aligned_cols=241 Identities=9% Similarity=-0.007 Sum_probs=153.3
Q ss_pred eeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEe
Q 017553 26 TNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG 104 (369)
Q Consensus 26 ~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~ 104 (369)
...+..+...+.+++|+| +|++++++..++ |.+||..+++...... .+...+..+++. ++|+ ++++.
T Consensus 37 ~~~~~~~~~~~~~~~~~~----~g~l~~~~~~~~~i~~~d~~~~~~~~~~~-----~~~~~~~~i~~~--~dg~-l~v~~ 104 (333)
T 2dg1_A 37 WLEISKKGLQLEGLNFDR----QGQLFLLDVFEGNIFKINPETKEIKRPFV-----SHKANPAAIKIH--KDGR-LFVCY 104 (333)
T ss_dssp EEEEESSCCCEEEEEECT----TSCEEEEETTTCEEEEECTTTCCEEEEEE-----CSSSSEEEEEEC--TTSC-EEEEE
T ss_pred eEEEeccCccccCcEECC----CCCEEEEECCCCEEEEEeCCCCcEEEEee-----CCCCCcceEEEC--CCCc-EEEEe
Confidence 334556777789999998 578888877666 9999987766544332 234568888887 8998 77766
Q ss_pred ecC----CeEEEEEcCCccccceee--ccccceEEEEecCCCCceEEEEeC------CCcEEEEEccCCcEEEEeeccCC
Q 017553 105 GIN----GIIRVIDVSNEKLHKSFV--GHGDSINEIRTQPLKPSLVVSASK------DESVRLWNVQTGICILIFAGAGG 172 (369)
Q Consensus 105 ~~d----g~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~~~ 172 (369)
..+ +.|.+||..+++....+. .+...+.+++++| ++.++++... .+.|..+|..+++......
T Consensus 105 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---- 179 (333)
T 2dg1_A 105 LGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ---- 179 (333)
T ss_dssp CTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE----
T ss_pred CCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECC-CCCEEEEeccccccCCCceEEEEeCCCCEEEEeec----
Confidence 655 689999987766442332 2345789999999 7777776653 3556666665555433322
Q ss_pred CCCcEEEEEecCCCce-EEEEEeeCCcEEEEEccCc-eeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee-
Q 017553 173 HRNEVLSVDFHPSDIY-RIASCGMDNTVKIWSMKEF-WTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL- 249 (369)
Q Consensus 173 ~~~~v~~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~- 249 (369)
....+..++|+| +++ ++++...++.|.+||++.. ....... .........+ ..+..++++
T Consensus 180 ~~~~~~~i~~~~-dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~---------------~~~~~~~~~~-~~~~~i~~d~ 242 (333)
T 2dg1_A 180 NISVANGIALST-DEKVLWVTETTANRLHRIALEDDGVTIQPFG---------------ATIPYYFTGH-EGPDSCCIDS 242 (333)
T ss_dssp EESSEEEEEECT-TSSEEEEEEGGGTEEEEEEECTTSSSEEEEE---------------EEEEEECCSS-SEEEEEEEBT
T ss_pred CCCcccceEECC-CCCEEEEEeCCCCeEEEEEecCCCcCccccc---------------ceEEEecCCC-CCCCceEECC
Confidence 334578999999 665 5556566889999999641 1100000 0000111112 356667776
Q ss_pred -CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCC------CeeEEEEeecCCccEEEEecCC
Q 017553 250 -GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPEC------DIWFIKFSCDFHYNAAAIGNRE 312 (369)
Q Consensus 250 -~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~------~i~~~~~s~~~~~~~l~~~~~d 312 (369)
+++.++...++.|.+||.. ++ .+..+..+.. .+..++|+|+++ .|++++.+
T Consensus 243 ~G~l~v~~~~~~~v~~~d~~-g~---------~~~~~~~~~~~~g~~~~~~~~~~~~dg~--~L~v~~~~ 300 (333)
T 2dg1_A 243 DDNLYVAMYGQGRVLVFNKR-GY---------PIGQILIPGRDEGHMLRSTHPQFIPGTN--QLIICSND 300 (333)
T ss_dssp TCCEEEEEETTTEEEEECTT-SC---------EEEEEECTTGGGTCSCBCCEEEECTTSC--EEEEEEEC
T ss_pred CCCEEEEEcCCCEEEEECCC-CC---------EEEEEEcCCCccccccCcceEEECCCCC--EEEEEeCc
Confidence 6666666678899999984 32 2333333322 578999999875 44444333
No 189
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.72 E-value=2.9e-13 Score=110.77 Aligned_cols=281 Identities=9% Similarity=-0.043 Sum_probs=182.1
Q ss_pred cccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecC
Q 017553 29 LQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN 107 (369)
Q Consensus 29 ~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~d 107 (369)
+......+.++++.+ +|.++++...++ |.+|+.. ++.. .+.. +.....+..+++. ++|. +.++...+
T Consensus 15 ~~~~~~~p~~i~~d~----~g~l~v~~~~~~~v~~~~~~-~~~~-~~~~---~~~~~~~~~i~~~--~~g~-l~v~~~~~ 82 (300)
T 2qc5_A 15 LSIPDSGPYGITSSE----DGKVWFTQHKANKISSLDQS-GRIK-EFEV---PTPDAKVMCLIVS--SLGD-IWFTENGA 82 (300)
T ss_dssp CSSTTCCEEEEEECT----TSCEEEEETTTTEEEEECTT-SCEE-EEEC---SSTTCCEEEEEEC--TTSC-EEEEETTT
T ss_pred cCCCCCCcceeeECC----CCCEEEEcCCCCeEEEECCC-CceE-EEEC---CCCCCcceeEEEC--CCCC-EEEEecCC
Confidence 334566889999998 578888776544 9999966 4433 2221 1233466677776 8887 66766667
Q ss_pred CeEEEEEcCCcccc-ceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCC
Q 017553 108 GIIRVIDVSNEKLH-KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSD 186 (369)
Q Consensus 108 g~i~vwd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 186 (369)
+.|..||.. ++.. ..+......+.++++.+ ++.++++...++.|..+|.. ++...... ......+..+++.+ +
T Consensus 83 ~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~--~~~~~~~~~i~~d~-~ 156 (300)
T 2qc5_A 83 NKIGKLSKK-GGFTEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDL--PNKGSYPAFITLGS-D 156 (300)
T ss_dssp TEEEEECTT-SCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEEC--SSTTCCEEEEEECT-T
T ss_pred CeEEEECCC-CCeEEecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEEEccC--CCCCCCceeEEECC-C
Confidence 899999977 5432 12222346789999998 77887777768899999987 55443221 12456789999998 7
Q ss_pred ceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEEE
Q 017553 187 IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVL 264 (369)
Q Consensus 187 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i 264 (369)
++++++...++.|..+|... ... ......+...+..+.++ +.+.++....+.|.+
T Consensus 157 g~l~v~~~~~~~i~~~~~~g-~~~----------------------~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~ 213 (300)
T 2qc5_A 157 NALWFTENQNNSIGRITNTG-KLE----------------------EYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGR 213 (300)
T ss_dssp SSEEEEETTTTEEEEECTTC-CEE----------------------EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred CCEEEEecCCCeEEEECCCC-cEE----------------------EeeCCCCCCCcceEEECCCCCEEEEccCCCEEEE
Confidence 77777666678899998832 110 01112233456677776 555555555678999
Q ss_pred ecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEE
Q 017553 265 WEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTA 344 (369)
Q Consensus 265 ~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 344 (369)
||. +++. ...........+..+++++++. +.++...++.|..||. +++ .....+. .....+.+++
T Consensus 214 ~~~-~g~~--------~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~i~~~~~-~g~-~~~~~~~--~~~~~~~~i~ 278 (300)
T 2qc5_A 214 ITT-TGEI--------SEYDIPTPNARPHAITAGKNSE--IWFTEWGANQIGRITN-DNT-IQEYQLQ--TENAEPHGIT 278 (300)
T ss_dssp ECT-TCCE--------EEEECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECT-TSC-EEEEECC--STTCCCCCEE
T ss_pred EcC-CCcE--------EEEECCCCCCCceEEEECCCCC--EEEeccCCCeEEEECC-CCc-EEEEECC--ccCCccceeE
Confidence 998 3321 1111222345678899999985 5555556789999998 342 2222222 3345688999
Q ss_pred ecCCCCEEEEeecCCeEEEEecC
Q 017553 345 MSYDGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 345 ~s~~~~~l~s~~~dg~i~vw~~~ 367 (369)
++++|+++++.. + .|..++.+
T Consensus 279 ~~~~g~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 279 FGKDGSVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp ECTTSCEEEECS-S-EEEEEEEC
T ss_pred eCCCCCEEEEcc-C-ceEEeCCC
Confidence 999998777665 4 67777654
No 190
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.71 E-value=1.5e-15 Score=138.88 Aligned_cols=247 Identities=11% Similarity=-0.047 Sum_probs=157.5
Q ss_pred cCCcCeEEEEEeeccCCCccEEEE-----ecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEe
Q 017553 31 EGKRPLYAVVFNFIDSRYFNVFAT-----VGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG 104 (369)
Q Consensus 31 ~h~~~v~~~~~s~~~~~~~~~la~-----~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~ 104 (369)
+|...+.+++||| +|++||. |+++. |++||+.+++.+. .... .......++|+ |||+ .|+.+
T Consensus 118 ~~~~~~~~~~~SP----DG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~---~~~~~~~~~ws--pDg~-~l~~~ 185 (695)
T 2bkl_A 118 DGTVSLGTWAVSW----DGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVI---EGGKYATPKWT--PDSK-GFYYE 185 (695)
T ss_dssp SSCEEEEEEEECT----TSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCB---SCCTTCCCEEC--TTSS-EEEEE
T ss_pred CCCEEEEEEEECC----CCCEEEEEECCCCCceEEEEEEECCCCCCcC--Cccc---CcccccceEEe--cCCC-EEEEE
Confidence 5666799999999 6898883 33334 9999998887541 1010 11112457787 9999 78887
Q ss_pred ecCCe-------------EEEEEcCCccc----cceeeccccceEEEEecCCCCceEEEEeCCC----cEEEEEccCCcE
Q 017553 105 GINGI-------------IRVIDVSNEKL----HKSFVGHGDSINEIRTQPLKPSLVVSASKDE----SVRLWNVQTGIC 163 (369)
Q Consensus 105 ~~dg~-------------i~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg----~i~vwd~~~~~~ 163 (369)
+.+.. |++|++.+++. +.....|...+..+.|+| ++++|+.++.++ .|++|+..+++.
T Consensus 186 ~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~l~~~~~~~~~~ 264 (695)
T 2bkl_A 186 WLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR-DGKYLFVYILRGWSENDVYWKRPGEKDF 264 (695)
T ss_dssp ECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT-TSCCEEEEEEETTTEEEEEEECTTCSSC
T ss_pred EecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC-CCCEEEEEEeCCCCceEEEEEcCCCCce
Confidence 77665 99999988763 333334556788999999 778777776655 677777655554
Q ss_pred EEEeeccCCCCCcEEEEEecCCCceEEEEEe---eCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccC-
Q 017553 164 ILIFAGAGGHRNEVLSVDFHPSDIYRIASCG---MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH- 239 (369)
Q Consensus 164 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 239 (369)
..... +...+....++ ++.+++... .++.|.+||+.++... ........+
T Consensus 265 ~~l~~----~~~~~~~~~~~--~g~l~~~s~~~~~~~~l~~~d~~~~~~~--------------------~~~~l~~~~~ 318 (695)
T 2bkl_A 265 RLLVK----GVGAKYEVHAW--KDRFYVLTDEGAPRQRVFEVDPAKPARA--------------------SWKEIVPEDS 318 (695)
T ss_dssp EEEEE----CSSCCEEEEEE--TTEEEEEECTTCTTCEEEEEBTTBCSGG--------------------GCEEEECCCS
T ss_pred EEeec----CCCceEEEEec--CCcEEEEECCCCCCCEEEEEeCCCCCcc--------------------CCeEEecCCC
Confidence 43333 55555666664 444555544 2578999998763210 001112222
Q ss_pred CCceeeeeee-CcEEEEeecCCeEEEecCCC-CCCCCCCCccceeeeccCC-CCCeeEEEEeecCCccEEE----EecCC
Q 017553 240 SNYVDCNRWL-GDFILSKSVDNEIVLWEPKM-KEQSPGEGTADILQKYPVP-ECDIWFIKFSCDFHYNAAA----IGNRE 312 (369)
Q Consensus 240 ~~~v~~~~~~-~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~~~~~~l~----~~~~d 312 (369)
...+..+.++ +.++++...|+..++|.+.. ++ ....+..+ ...+..+.++|+++ .++ +....
T Consensus 319 ~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~---------~~~~l~~~~~~~v~~~~~s~d~~--~l~~~~ss~~~P 387 (695)
T 2bkl_A 319 SASLLSVSIVGGHLSLEYLKDATSEVRVATLKGK---------PVRTVQLPGVGAASNLMGLEDLD--DAYYVFTSFTTP 387 (695)
T ss_dssp SCEEEEEEEETTEEEEEEEETTEEEEEEEETTCC---------EEEECCCSSSSEECCCBSCTTCS--EEEEEEEETTEE
T ss_pred CCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCC---------eeEEecCCCCeEEEEeecCCCCC--EEEEEEcCCCCC
Confidence 4456777777 55778888899888886552 21 23334433 45567778888886 343 22345
Q ss_pred CeEEEEEccCCCcee
Q 017553 313 GKIFVWELQSSPPVL 327 (369)
Q Consensus 313 g~i~i~d~~~~~~~~ 327 (369)
+.|++||+.+++...
T Consensus 388 ~~v~~~d~~~g~~~~ 402 (695)
T 2bkl_A 388 RQIYKTSVSTGKSEL 402 (695)
T ss_dssp EEEEEEETTTCCEEE
T ss_pred CEEEEEECCCCcEEE
Confidence 789999999876433
No 191
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.71 E-value=2.7e-14 Score=116.71 Aligned_cols=238 Identities=13% Similarity=-0.002 Sum_probs=157.2
Q ss_pred cccCCcCeEEEEEeeccCCCcc-EEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeec
Q 017553 29 LQEGKRPLYAVVFNFIDSRYFN-VFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI 106 (369)
Q Consensus 29 ~~~h~~~v~~~~~s~~~~~~~~-~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~ 106 (369)
+..+.....+++|+| +++ +++++..++ |..|+..++ ...+. .+...+..+++. ++|+ ++++...
T Consensus 23 l~~~~~~~eg~~~d~----~g~~l~~~~~~~~~i~~~~~~~~--~~~~~-----~~~~~~~~l~~~--~dg~-l~v~~~~ 88 (296)
T 3e5z_A 23 LADGFTWTEGPVYVP----ARSAVIFSDVRQNRTWAWSDDGQ--LSPEM-----HPSHHQNGHCLN--KQGH-LIACSHG 88 (296)
T ss_dssp EECCCSSEEEEEEEG----GGTEEEEEEGGGTEEEEEETTSC--EEEEE-----SSCSSEEEEEEC--TTCC-EEEEETT
T ss_pred EecCCccccCCeEeC----CCCEEEEEeCCCCEEEEEECCCC--eEEEE-----CCCCCcceeeEC--CCCc-EEEEecC
Confidence 445667788999999 576 677776665 999997765 44443 244567778777 9998 7777767
Q ss_pred CCeEEEEEcCCccccceeecc----ccceEEEEecCCCCceEEE----Ee-------------CCCcEEEEEccCCcEEE
Q 017553 107 NGIIRVIDVSNEKLHKSFVGH----GDSINEIRTQPLKPSLVVS----AS-------------KDESVRLWNVQTGICIL 165 (369)
Q Consensus 107 dg~i~vwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~s----~~-------------~dg~i~vwd~~~~~~~~ 165 (369)
++.|.+||..+++........ ...+..++++| ++.++++ |+ ..+.|..++.. ++. .
T Consensus 89 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~ 165 (296)
T 3e5z_A 89 LRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-S 165 (296)
T ss_dssp TTEEEEECSTTCCEEEEECEETTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-E
T ss_pred CCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-E
Confidence 789999998777654332221 23467899999 8888887 33 12455555554 443 3
Q ss_pred EeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccC-ceeeeeeeeeccCCCCCCCCceeecceeeeccCCCcee
Q 017553 166 IFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE-FWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD 244 (369)
Q Consensus 166 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 244 (369)
.+. .+......++|+| +++.+++.+.++.|.+|++.. +..... ...+..+...+.
T Consensus 166 ~~~---~~~~~~~gi~~s~-dg~~lv~~~~~~~i~~~~~~~~g~~~~~--------------------~~~~~~~~~~p~ 221 (296)
T 3e5z_A 166 API---RDRVKPNGLAFLP-SGNLLVSDTGDNATHRYCLNARGETEYQ--------------------GVHFTVEPGKTD 221 (296)
T ss_dssp EEE---CCCSSEEEEEECT-TSCEEEEETTTTEEEEEEECSSSCEEEE--------------------EEEECCSSSCCC
T ss_pred Eee---cCCCCCccEEECC-CCCEEEEeCCCCeEEEEEECCCCcCcCC--------------------CeEeeCCCCCCC
Confidence 333 4666788999999 777777777789999999973 211000 001122445566
Q ss_pred eeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEe-ecCCccEEEEecCCCeEEEEEcc
Q 017553 245 CNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFS-CDFHYNAAAIGNREGKIFVWELQ 321 (369)
Q Consensus 245 ~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~~~~l~~~~~dg~i~i~d~~ 321 (369)
.++++ |++.++ . ++.|.+||.. ++ .+..+..+.. +.+++|. |+++ .|++++.+ .+.-++..
T Consensus 222 ~i~~d~~G~l~v~-~-~~~v~~~~~~-g~---------~~~~~~~~~~-~~~~~f~~~d~~--~L~v~t~~-~l~~~~~~ 285 (296)
T 3e5z_A 222 GLRVDAGGLIWAS-A-GDGVHVLTPD-GD---------ELGRVLTPQT-TSNLCFGGPEGR--TLYMTVST-EFWSIETN 285 (296)
T ss_dssp SEEEBTTSCEEEE-E-TTEEEEECTT-SC---------EEEEEECSSC-CCEEEEESTTSC--EEEEEETT-EEEEEECS
T ss_pred eEEECCCCCEEEE-c-CCeEEEECCC-CC---------EEEEEECCCC-ceeEEEECCCCC--EEEEEcCC-eEEEEEcc
Confidence 77776 554444 4 8899999986 33 4555666656 8899995 7775 66666655 45556666
Q ss_pred CC
Q 017553 322 SS 323 (369)
Q Consensus 322 ~~ 323 (369)
+.
T Consensus 286 ~~ 287 (296)
T 3e5z_A 286 VR 287 (296)
T ss_dssp CC
T ss_pred cc
Confidence 55
No 192
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.71 E-value=1.4e-14 Score=132.88 Aligned_cols=244 Identities=9% Similarity=0.011 Sum_probs=158.3
Q ss_pred cCCcCeEEEEEeeccCCCccEEEEecC----C--cEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEe
Q 017553 31 EGKRPLYAVVFNFIDSRYFNVFATVGG----N--RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG 104 (369)
Q Consensus 31 ~h~~~v~~~~~s~~~~~~~~~la~~~~----~--~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~ 104 (369)
+|...+..++||| +|++||.+.. + .|++||+.+++....... ...+..++|+ |||+ .|+.+
T Consensus 122 ~~~~~~~~~~~SP----Dg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~------~~~~~~~~ws--pDg~-~l~~~ 188 (710)
T 2xdw_A 122 DGTVALRGYAFSE----DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE------RVKFSCMAWT--HDGK-GMFYN 188 (710)
T ss_dssp TSCEEEEEEEECT----TSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE------EECSCCEEEC--TTSS-EEEEE
T ss_pred CCCEEEEEEEECC----CCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc------CcccceEEEE--eCCC-EEEEE
Confidence 4555688999999 6888886542 2 499999988887653221 1125568888 9999 77777
Q ss_pred ecCCe----------------EEEEEcCCcccc--c--eeeccccceEEEEecCCCCceEEEEeC-----CCcEEEEEcc
Q 017553 105 GINGI----------------IRVIDVSNEKLH--K--SFVGHGDSINEIRTQPLKPSLVVSASK-----DESVRLWNVQ 159 (369)
Q Consensus 105 ~~dg~----------------i~vwd~~~~~~~--~--~~~~~~~~v~~~~~~~~~~~~l~s~~~-----dg~i~vwd~~ 159 (369)
+.++. |++|++.+++.. . ....|...+..+.|+| ++++|+.++. +..|++||+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~ 267 (710)
T 2xdw_A 189 AYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQ 267 (710)
T ss_dssp ECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGG
T ss_pred EECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC-CCCEEEEEEEccCCCccEEEEEECc
Confidence 66655 999999887632 1 2222455678999999 7787776654 5789999998
Q ss_pred C------Cc-EEEEeeccCCCCCcEEEEEecCCCceEEEEEee-C---CcEEEEEccCceeeeeeeeeccCCCCCCCCce
Q 017553 160 T------GI-CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM-D---NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKY 228 (369)
Q Consensus 160 ~------~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d---~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (369)
+ +. ....+. .+...+.. .|+| ++..|+..+. + +.|.+||+.++..
T Consensus 268 ~~~~~~~~~~~~~~l~---~~~~~~~~-~~s~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~------------------- 323 (710)
T 2xdw_A 268 QESNGITGILKWVKLI---DNFEGEYD-YVTN-EGTVFTFKTNRHSPNYRLINIDFTDPEE------------------- 323 (710)
T ss_dssp GSSSSSCSSCCCEEEE---CSSSSCEE-EEEE-ETTEEEEEECTTCTTCEEEEEETTSCCG-------------------
T ss_pred ccccccCCccceEEee---CCCCcEEE-EEec-cCCEEEEEECCCCCCCEEEEEeCCCCCc-------------------
Confidence 6 53 344454 35555554 4777 5554544443 2 3699999877310
Q ss_pred eecceeeeccCCC--ceeeeeee-C-cEEEEeecCCe--EEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCC
Q 017553 229 VQFPVFIASVHSN--YVDCNRWL-G-DFILSKSVDNE--IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFH 302 (369)
Q Consensus 229 ~~~~~~~~~~~~~--~v~~~~~~-~-~~l~~~~~d~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 302 (369)
.....+..|.. .+..+.|. + .++++...++. |.+|++.+++ .+..+..+...+..+.++|+++
T Consensus 324 --~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~---------~~~~l~~~~~~v~~~~~s~d~~ 392 (710)
T 2xdw_A 324 --SKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGA---------LLKIFPLEVGSVVGYSGQKKDT 392 (710)
T ss_dssp --GGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCC---------EEEEECCCSSEEEEEECCTTCS
T ss_pred --ccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCC---------EEEecCCCCceEEEEecCCCCC
Confidence 01122223322 57777776 4 46677777875 5666765543 3445555566778888998876
Q ss_pred ccEEEE---ecCCCeEEEEEccCCC
Q 017553 303 YNAAAI---GNREGKIFVWELQSSP 324 (369)
Q Consensus 303 ~~~l~~---~~~dg~i~i~d~~~~~ 324 (369)
. ++++ ....+.|+.||+.+++
T Consensus 393 ~-l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 393 E-IFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp E-EEEEEECSSCCCEEEEEETTSSS
T ss_pred E-EEEEEeCCCCCCEEEEEECCCCc
Confidence 2 3322 2356899999998876
No 193
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.70 E-value=1.1e-14 Score=117.30 Aligned_cols=237 Identities=9% Similarity=-0.059 Sum_probs=155.3
Q ss_pred CeEEEEEeeccCCCccEEE-EecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEE
Q 017553 35 PLYAVVFNFIDSRYFNVFA-TVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRV 112 (369)
Q Consensus 35 ~v~~~~~s~~~~~~~~~la-~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~v 112 (369)
...+++++| +|++++ +...++ |.+|+..+.... .+.. .....+..+++. ++|. ++++.. ++.|.+
T Consensus 25 ~p~~i~~~~----~g~l~v~~~~~~~~i~~~~~~~~~~~-~~~~----~~~~~p~~i~~~--~~g~-l~v~~~-~~~i~~ 91 (270)
T 1rwi_B 25 SPSGVAVDS----AGNVYVTSEGMYGRVVKLATGSTGTT-VLPF----NGLYQPQGLAVD--GAGT-VYVTDF-NNRVVT 91 (270)
T ss_dssp CEEEEEECT----TCCEEEEECSSSCEEEEECC-----E-ECCC----CSCCSCCCEEEC--TTCC-EEEEET-TTEEEE
T ss_pred CccceEECC----CCCEEEEccCCCCcEEEecCCCcccc-eEee----CCcCCcceeEEC--CCCC-EEEEcC-CCEEEE
Confidence 678999998 578777 534444 999986544322 1111 122345667776 8888 666655 889999
Q ss_pred EEcCCccccceee-ccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEE
Q 017553 113 IDVSNEKLHKSFV-GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIA 191 (369)
Q Consensus 113 wd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 191 (369)
||...... ..+. .....+..+++.+ ++.++++...++.|.+|+..+........ .....+.++++++ ++++++
T Consensus 92 ~d~~~~~~-~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~~~~---~~~~~p~~i~~~~-~g~l~v 165 (270)
T 1rwi_B 92 LAAGSNNQ-TVLPFDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPF---TGLNDPDGVAVDN-SGNVYV 165 (270)
T ss_dssp ECTTCSCC-EECCCCSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTCCSCEECCC---CSCCSCCCEEECT-TCCEEE
T ss_pred EeCCCceE-eeeecCCcCCCcceEECC-CCCEEEEECCCCEEEEEECCCceeEeecc---ccCCCceeEEEeC-CCCEEE
Confidence 99765443 2232 2335689999999 77888777778899999866554333221 2334678899998 778777
Q ss_pred EEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEEEecCCC
Q 017553 192 SCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKM 269 (369)
Q Consensus 192 ~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~ 269 (369)
+...++.|.+||...... ......+...+..++++ |.++++...++.|.+|+...
T Consensus 166 ~~~~~~~i~~~~~~~~~~-----------------------~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~ 222 (270)
T 1rwi_B 166 TDTDNNRVVKLEAESNNQ-----------------------VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS 222 (270)
T ss_dssp EEGGGTEEEEECTTTCCE-----------------------EECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTC
T ss_pred EECCCCEEEEEecCCCce-----------------------EeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCC
Confidence 777788999999876321 11111222456777886 55556656688999999876
Q ss_pred CCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCC
Q 017553 270 KEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP 324 (369)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~ 324 (369)
... ..........+..+++++++. ++++...++.|++|++...+
T Consensus 223 ~~~---------~~~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 223 TTS---------TVLPFTGLNTPLAVAVDSDRT--VYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp SCC---------EECCCCSCSCEEEEEECTTCC--EEEEEGGGTEEEEECCCGGG
T ss_pred Ccc---------eeeccCCCCCceeEEECCCCC--EEEEECCCCEEEEEcCCCcc
Confidence 431 111111224678899999985 77788889999999987653
No 194
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.69 E-value=7e-13 Score=111.36 Aligned_cols=269 Identities=8% Similarity=-0.085 Sum_probs=167.7
Q ss_pred CccEEEEecC---C---cEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEee----------cCCeEE
Q 017553 48 YFNVFATVGG---N---RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG----------INGIIR 111 (369)
Q Consensus 48 ~~~~la~~~~---~---~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~----------~dg~i~ 111 (369)
+++++.++.. + .|.+||..+++.+..+.. ...+ .++++ |||+ .++++. .++.|.
T Consensus 31 ~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~-----g~~p--~i~~s--pDg~-~lyv~n~~~~~~~rg~~~~~v~ 100 (373)
T 2mad_H 31 DGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNG-----GFLP--NPVAA--HSGS-EFALASTSFSRIAKGKRTDYVE 100 (373)
T ss_pred CCCEEEEeCCcccCCccEEEEEECCCCeEEEEecC-----CCCC--CeEEC--CCCC-EEEEEeccccccccCCCCCeEE
Confidence 4555555442 2 579999998887766552 1112 46666 9999 676664 367899
Q ss_pred EEEcCCccccceeecc-------ccceEEEEecCCCCceEEEEeC--CCcEEEEEccCCcEEEE-eeccCCCCCcEEEEE
Q 017553 112 VIDVSNEKLHKSFVGH-------GDSINEIRTQPLKPSLVVSASK--DESVRLWNVQTGICILI-FAGAGGHRNEVLSVD 181 (369)
Q Consensus 112 vwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~-~~~~~~~~~~v~~~~ 181 (369)
+||..+.+.+..+... ......+.|+| ++++|+.+.. ++.|.++| .+++.+.. +. .... +.
T Consensus 101 viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp-DG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~----~~~~---~~ 171 (373)
T 2mad_H 101 VFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGPAVGLVV-QGGSSDDQLLS----SPTC---YH 171 (373)
T ss_pred EEECCCCcEEEEEECCCccccccCCCccceEECC-CCCEEEEEecCCCCeEEEEE-CCCCEEeEEcC----CCce---EE
Confidence 9999988877766422 12345899999 8888887764 57899999 99988877 54 2222 44
Q ss_pred ecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCce-eeeeee--CcEEEEeec
Q 017553 182 FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV-DCNRWL--GDFILSKSV 258 (369)
Q Consensus 182 ~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~--~~~l~~~~~ 258 (369)
+.|.+...+++.+.||.+.++|. +++....... .+.. ....++ ....+. +..++..+.
T Consensus 172 ~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~---------------~~~~---~~~~p~~~~~~~~~~~~~~~~~~~ 232 (373)
T 2mad_H 172 IHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLV---------------GAML---TAAQNLLTQPAQANKSGRIVWPVY 232 (373)
T ss_pred EEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEec---------------cccc---cCCcceeecceeEecCCEEEEEcC
Confidence 55545567778888999999999 6433211000 0000 001111 111121 333333346
Q ss_pred CCeEEEecCCCCCCCCCCCccceeeeccC----------CCCCeeEEEEeecCCccEEEEec----------CCCeEEEE
Q 017553 259 DNEIVLWEPKMKEQSPGEGTADILQKYPV----------PECDIWFIKFSCDFHYNAAAIGN----------REGKIFVW 318 (369)
Q Consensus 259 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~----------~~~~i~~~~~s~~~~~~~l~~~~----------~dg~i~i~ 318 (369)
.+.+.+.|+...... .+..+.. .......++++|+++ .+.+.. ..+.|.++
T Consensus 233 ~~~v~vid~~~~~~~-------v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~--~lyV~~~~~~~~~~~~~~~~V~VI 303 (373)
T 2mad_H 233 SGKILQADISAAGAT-------NKAPIDALSGGRKADTWRPGGWQQVAYLKSSD--GIYLLTSEQSAWKLHAAAKEVTSV 303 (373)
T ss_pred CceEEEEeccCCcce-------EeeeeeecCCcccccceecCceEeEEECCCCC--EEEEEeccCCcccccCCCCeEEEE
Confidence 788999998754311 1111110 112234478899987 333322 24689999
Q ss_pred EccCCCceeEEEeecCCCccceEEEEecCCCC-EEEEee-cCCeEEEEecCC
Q 017553 319 ELQSSPPVLIARLSHAQSKSPIRQTAMSYDGS-TILSCC-EDGAIWRWDAIP 368 (369)
Q Consensus 319 d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~-~dg~i~vw~~~~ 368 (369)
|..+. +.+..+... ....+++|+|||+ +++++. .++.|.++|+++
T Consensus 304 D~~t~--~vv~~i~~g---~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t 350 (373)
T 2mad_H 304 TGLVG--QTSSQISLG---HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGA 350 (373)
T ss_pred ECCCC--EEEEEEECC---CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence 99988 455555432 3578999999999 788777 589999999875
No 195
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.69 E-value=1.3e-13 Score=114.24 Aligned_cols=271 Identities=10% Similarity=0.027 Sum_probs=173.0
Q ss_pred CccEEEEecC-----Cc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEee----------cCCeEE
Q 017553 48 YFNVFATVGG-----NR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG----------INGIIR 111 (369)
Q Consensus 48 ~~~~la~~~~-----~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~----------~dg~i~ 111 (369)
+++.+..... ++ |.++|..+++.+..+.. ...+ . ++++ |||+ .++++. .++.|.
T Consensus 43 d~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~v-----G~~P-~-va~s--pDG~-~lyVan~~~~r~~~G~~~~~Vs 112 (386)
T 3sjl_D 43 DARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG-----GFLP-N-PVVA--DDGS-FIAHASTVFSRIARGERTDYVE 112 (386)
T ss_dssp CTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEE-----CSSC-E-EEEC--TTSS-CEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEEC-----CCCC-c-EEEC--CCCC-EEEEEcccccccccCCCCCEEE
Confidence 5666666544 34 99999999999888874 2222 3 6666 9999 565554 367899
Q ss_pred EEEcCCccccceeeccc-------cceEEEEecCCCCceEEEEeC--CCcEEEEEccCCcEEEEeeccCCCCCcEEEEEe
Q 017553 112 VIDVSNEKLHKSFVGHG-------DSINEIRTQPLKPSLVVSASK--DESVRLWNVQTGICILIFAGAGGHRNEVLSVDF 182 (369)
Q Consensus 112 vwd~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~ 182 (369)
+||..+.+.+.++.-.. .....+.|+| ++++++.+.. ++.|.++|+.+++.+..+.. .+. ...+
T Consensus 113 viD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp-DGk~lyVan~~~~~~VsVID~~t~~vv~tI~v----~g~--~~~~ 185 (386)
T 3sjl_D 113 VFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV----PDC--YHIF 185 (386)
T ss_dssp EECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEEEC----CSE--EEEE
T ss_pred EEECCCCeEEEEEECCCccccccCCCCceEEEcC-CCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC----CCc--ceee
Confidence 99999999888775321 2456799999 7887777753 68999999999999988863 221 2223
Q ss_pred cCCCceEEEEEeeCCcEEEEEccC-ceeeeeeeeeccCCCCCCCCceeecceeeeccCCCce-eeeeee---CcEEEEee
Q 017553 183 HPSDIYRIASCGMDNTVKIWSMKE-FWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV-DCNRWL---GDFILSKS 257 (369)
Q Consensus 183 ~~~~~~~l~~~~~d~~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~---~~~l~~~~ 257 (369)
|.+.+.+++.+.||++.+.++.. +....... ..+..-...+ ....|. |++++ .+
T Consensus 186 -P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~-------------------~~~~~~~~~~~~~~~~~~~dG~~~~-vs 244 (386)
T 3sjl_D 186 -PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT-------------------EVFHPEDEFLINHPAYSQKAGRLVW-PT 244 (386)
T ss_dssp -EEETTEEEEEETTSCEEEEECCSSSCCEEEEC-------------------CCCSCTTSCBCSCCEEETTTTEEEE-EB
T ss_pred -cCCCceeEEECCCCCEEEEECCCCCeEEEeec-------------------ceeccccccccccceeEcCCCcEEE-Ee
Confidence 43566777888899999999876 32211000 0000000111 112332 44444 56
Q ss_pred cCCeEEEecCCCCCCCCCCCccceeeecc----------CCCCCeeEEEEeecCCccEEEEec--------CCCeEEEEE
Q 017553 258 VDNEIVLWEPKMKEQSPGEGTADILQKYP----------VPECDIWFIKFSCDFHYNAAAIGN--------REGKIFVWE 319 (369)
Q Consensus 258 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~----------~~~~~i~~~~~s~~~~~~~l~~~~--------~dg~i~i~d 319 (369)
.+|.+++.|+.+.... .+..+. ........++++++++..+++... ..+.|.++|
T Consensus 245 ~~g~V~v~d~~~~~~~-------v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD 317 (386)
T 3sjl_D 245 YTGKIHQIDLSSGDAK-------FLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLD 317 (386)
T ss_dssp TTSEEEEEECTTSSCE-------ECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEE
T ss_pred CCCEEEEEECCCCcce-------eecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEE
Confidence 6899999999765421 111111 011234457888888743333321 135799999
Q ss_pred ccCCCceeEEEeecCCCccceEEEEecCCCC-EEEEe-ecCCeEEEEecCC
Q 017553 320 LQSSPPVLIARLSHAQSKSPIRQTAMSYDGS-TILSC-CEDGAIWRWDAIP 368 (369)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~-~~dg~i~vw~~~~ 368 (369)
+.+.+. +..+... ..+.++++++|++ +|+++ ..++.|.++|..+
T Consensus 318 ~~t~kv--~~~i~vg---~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t 363 (386)
T 3sjl_D 318 AKTGER--LAKFEMG---HEIDSINVSQDEKPLLYALSTGDKTLYIHDAES 363 (386)
T ss_dssp TTTCCE--EEEEEEE---EEECEEEECSSSSCEEEEEETTTTEEEEEETTT
T ss_pred CCCCeE--EEEEECC---CCcceEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence 999854 4444422 4688999999996 66665 4589999999865
No 196
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.69 E-value=1.4e-13 Score=114.11 Aligned_cols=242 Identities=7% Similarity=-0.050 Sum_probs=163.5
Q ss_pred cCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEE
Q 017553 34 RPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRV 112 (369)
Q Consensus 34 ~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~v 112 (369)
.....+++.. +.++++...++ |.+||..+++.+..+.. ......++++ ++++ ++++...++.|.+
T Consensus 44 ~~~~~i~~~~-----~~lyv~~~~~~~v~viD~~t~~~~~~i~~------~~~p~~i~~~--~~g~-lyv~~~~~~~v~~ 109 (328)
T 3dsm_A 44 DVAQSMVIRD-----GIGWIVVNNSHVIFAIDINTFKEVGRITG------FTSPRYIHFL--SDEK-AYVTQIWDYRIFI 109 (328)
T ss_dssp SCEEEEEEET-----TEEEEEEGGGTEEEEEETTTCCEEEEEEC------CSSEEEEEEE--ETTE-EEEEEBSCSEEEE
T ss_pred ccceEEEEEC-----CEEEEEEcCCCEEEEEECcccEEEEEcCC------CCCCcEEEEe--CCCe-EEEEECCCCeEEE
Confidence 4467788754 56666666555 99999999998887752 2345667776 7785 5555547899999
Q ss_pred EEcCCccccceeeccc-----cceEEEEecCCCCceEEEEe-CCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCC
Q 017553 113 IDVSNEKLHKSFVGHG-----DSINEIRTQPLKPSLVVSAS-KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSD 186 (369)
Q Consensus 113 wd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 186 (369)
||..+++....+.... .....+++ . ++.++++.. .++.|.++|+.+++.+..+. .......++++| +
T Consensus 110 iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~----~g~~p~~i~~~~-d 182 (328)
T 3dsm_A 110 INPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDELT----IGIQPTSLVMDK-Y 182 (328)
T ss_dssp EETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEEE----CSSCBCCCEECT-T
T ss_pred EECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEE----cCCCccceEEcC-C
Confidence 9999988777666332 14566777 3 555555554 48899999999999888776 233456889999 7
Q ss_pred ceEEEEEeeC----------CcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccC-CCceeeeeee--CcEE
Q 017553 187 IYRIASCGMD----------NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH-SNYVDCNRWL--GDFI 253 (369)
Q Consensus 187 ~~~l~~~~~d----------~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~--~~~l 253 (369)
+++++++..+ +.|.++|..+++. ...+... ......++++ ++.+
T Consensus 183 G~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v-----------------------~~~~~~~~g~~p~~la~~~d~~~l 239 (328)
T 3dsm_A 183 NKMWTITDGGYEGSPYGYEAPSLYRIDAETFTV-----------------------EKQFKFKLGDWPSEVQLNGTRDTL 239 (328)
T ss_dssp SEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEE-----------------------EEEEECCTTCCCEEEEECTTSCEE
T ss_pred CCEEEEECCCccCCccccCCceEEEEECCCCeE-----------------------EEEEecCCCCCceeEEEecCCCEE
Confidence 8877777655 7899999987431 1111111 2356778887 6677
Q ss_pred EEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEe----cCCCeEEEEEccCCCceeEE
Q 017553 254 LSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG----NREGKIFVWELQSSPPVLIA 329 (369)
Q Consensus 254 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~----~~dg~i~i~d~~~~~~~~~~ 329 (369)
+++.. .|.+||..+.+... .............++++|++. .+.++. ..++.|.+||.. ++ .+.
T Consensus 240 yv~~~--~v~~~d~~t~~~~~-------~~~~~~~~~~p~gi~vdp~~g-~lyva~~~~y~~~~~V~v~d~~-g~--~~~ 306 (328)
T 3dsm_A 240 YWINN--DIWRMPVEADRVPV-------RPFLEFRDTKYYGLTVNPNNG-EVYVADAIDYQQQGIVYRYSPQ-GK--LID 306 (328)
T ss_dssp EEESS--SEEEEETTCSSCCS-------SCSBCCCSSCEEEEEECTTTC-CEEEEECTTSSSEEEEEEECTT-CC--EEE
T ss_pred EEEcc--EEEEEECCCCceee-------eeeecCCCCceEEEEEcCCCC-eEEEEcccccccCCEEEEECCC-CC--EEE
Confidence 76554 89999998776311 001111134578899999554 255555 578999999998 64 344
Q ss_pred Eee
Q 017553 330 RLS 332 (369)
Q Consensus 330 ~~~ 332 (369)
.+.
T Consensus 307 ~i~ 309 (328)
T 3dsm_A 307 EFY 309 (328)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 197
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.68 E-value=7.2e-14 Score=112.40 Aligned_cols=246 Identities=8% Similarity=-0.031 Sum_probs=165.3
Q ss_pred ccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeecc
Q 017553 49 FNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGH 127 (369)
Q Consensus 49 ~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 127 (369)
+++|++++.++ |.+||.++++.+..+... ....+.++.+. |+|+ +++ +.++.|+.||. +++.+..+..+
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~----~~~~~~~~~~~--pdG~-ilv--s~~~~V~~~d~-~G~~~W~~~~~ 74 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLE----KGWECNSVAAT--KAGE-ILF--SYSKGAKMITR-DGRELWNIAAP 74 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECC----TTCCCCEEEEC--TTSC-EEE--ECBSEEEEECT-TSCEEEEEECC
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCC----ccCCCcCeEEC--CCCC-EEE--eCCCCEEEECC-CCCEEEEEcCC
Confidence 78999999888 999998899988887742 11356667776 9998 777 34778999998 89988888865
Q ss_pred c-cceEEEEecCCCCceEEEEeC-CCcEEEEEccCCcEEEEeeccC---CCCCcEEEEEecCCCceEEEEEeeCCcEEEE
Q 017553 128 G-DSINEIRTQPLKPSLVVSASK-DESVRLWNVQTGICILIFAGAG---GHRNEVLSVDFHPSDIYRIASCGMDNTVKIW 202 (369)
Q Consensus 128 ~-~~v~~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~ 202 (369)
. ..+.++.+.+ +++++++.+. ++.|..+|. +|+.+..+.... .+......+++.+ +++++++...++.|..|
T Consensus 75 ~~~~~~~~~~~~-dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~-~G~~lv~~~~~~~v~~~ 151 (276)
T 3no2_A 75 AGCEMQTARILP-DGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNK-KGNYLVPLFATSEVREI 151 (276)
T ss_dssp TTCEEEEEEECT-TSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECT-TSCEEEEETTTTEEEEE
T ss_pred CCccccccEECC-CCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECC-CCCEEEEecCCCEEEEE
Confidence 3 5788999999 8889888877 778888886 688777765211 1222344567788 88999999999999999
Q ss_pred EccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeee--eCcEEEEeecCCeEEEecCCCCCCCCCCCccc
Q 017553 203 SMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW--LGDFILSKSVDNEIVLWEPKMKEQSPGEGTAD 280 (369)
Q Consensus 203 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 280 (369)
|.. ++.... +... ..+.++.. +++.++++..+++|..+|..+++
T Consensus 152 d~~-G~~~w~-----------------------~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~--------- 197 (276)
T 3no2_A 152 APN-GQLLNS-----------------------VKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNR--------- 197 (276)
T ss_dssp CTT-SCEEEE-----------------------EECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCC---------
T ss_pred CCC-CCEEEE-----------------------EECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCc---------
Confidence 987 443222 1111 12222333 37788888888899999999876
Q ss_pred eeeeccCC------CCCeeEEEEeecCCccEEEEec--CC------CeEEEEEccCCCceeEEEeecCCCccceEEEE
Q 017553 281 ILQKYPVP------ECDIWFIKFSCDFHYNAAAIGN--RE------GKIFVWELQSSPPVLIARLSHAQSKSPIRQTA 344 (369)
Q Consensus 281 ~~~~~~~~------~~~i~~~~~s~~~~~~~l~~~~--~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 344 (369)
.+-++... -..+..++..+++. ++++.. .. +..+++.+.... ..+..+.....-+.+.+++
T Consensus 198 ~~w~~~~~~~~~~~l~~~~~~~~~~~G~--i~v~~~~g~~~~~~~~~~~~~~~~~~~g-~~~W~~~~~~~~~~~~~~~ 272 (276)
T 3no2_A 198 IVRRVNANDIEGVQLFFVAQLFPLQNGG--LYICNWQGHDREAGKGKHPQLVEIDSEG-KVVWQLNDKVKFGMISTIC 272 (276)
T ss_dssp EEEEEEGGGSBSCCCSEEEEEEECTTSC--EEEEEECTTCTTGGGSCCCSEEEECTTS-BEEEEECCTTTSCCCCEEE
T ss_pred EEEEecCCCCCCccccccccceEcCCCC--EEEEeccCccccccccCCceEEEECCCC-CEEEEecCcccccceeeee
Confidence 33333221 12366777888885 555542 11 234566663322 4555665334445555543
No 198
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.67 E-value=3e-14 Score=119.27 Aligned_cols=222 Identities=13% Similarity=0.042 Sum_probs=143.2
Q ss_pred cCeEEEEEeeccCCCccEEEEecCC----c--EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeec-
Q 017553 34 RPLYAVVFNFIDSRYFNVFATVGGN----R--VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI- 106 (369)
Q Consensus 34 ~~v~~~~~s~~~~~~~~~la~~~~~----~--v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~- 106 (369)
..+..++||| +|+.||..+.+ . |.+|++.+++...... ... +..++|+ |+|+ .|+.++.
T Consensus 59 ~~~~~~~~Sp----Dg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~------~~~-~~~~~ws--pdg~-~l~~~~~~ 124 (347)
T 2gop_A 59 ENATMPRISP----DGKKIAFMRANEEKKVSEIWVADLETLSSKKILE------AKN-IRSLEWN--EDSR-KLLIVGFK 124 (347)
T ss_dssp ESCEEEEECT----TSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEE------ESE-EEEEEEC--TTSS-EEEEEEEC
T ss_pred ccCCCeEECC----CCCEEEEEEeccCCCcceEEEEECCCCceEEEEc------CCC-ccceeEC--CCCC-EEEEEEcc
Confidence 4688899999 68888877642 2 8888877766544433 122 7778887 9998 6666653
Q ss_pred --------------------------CCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCC-------cE
Q 017553 107 --------------------------NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDE-------SV 153 (369)
Q Consensus 107 --------------------------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg-------~i 153 (369)
...|++||+.+++.+..+.. . .+..+.|+| ++ +++++..++ ..
T Consensus 125 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~~ 200 (347)
T 2gop_A 125 RREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHR-DK-IVVNVPHREIIPQYFKFW 200 (347)
T ss_dssp CCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEET-TE-EEEEEECCCSSCCSSCCE
T ss_pred CCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCC-Ce-EEEEEecccccccccccc
Confidence 25799999988876455554 4 788999999 77 777776542 44
Q ss_pred EEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeC--------CcEEEEEccCceeeeeeeeeccCCCCCCC
Q 017553 154 RLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD--------NTVKIWSMKEFWTYVEKSFTWTDLPSKFP 225 (369)
Q Consensus 154 ~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------~~v~i~d~~~~~~~~~~~~~~~~~~~~~~ 225 (369)
.+|.+.+++. ..+. .+ ..+..+ +| +++.|+.++.+ ..|.+|| +++
T Consensus 201 ~l~~~d~~~~-~~l~---~~-~~~~~~--sp-dg~~l~~~~~~~~~~~~~~~~l~~~d--~~~----------------- 253 (347)
T 2gop_A 201 DIYIWEDGKE-EKMF---EK-VSFYAV--DS-DGERILLYGKPEKKYMSEHNKLYIYD--GKE----------------- 253 (347)
T ss_dssp EEEEEETTEE-EEEE---EE-ESEEEE--EE-CSSCEEEEECCSSSCCCSSCEEEEEC--SSC-----------------
T ss_pred cEEEeCCCce-EEec---cC-cceeeE--CC-CCCEEEEEEccccCCccccceEEEEC--CCc-----------------
Confidence 5555555543 4443 24 455544 88 77777766644 3577777 311
Q ss_pred CceeecceeeeccCCCceee-eeeeCcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCcc
Q 017553 226 TKYVQFPVFIASVHSNYVDC-NRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYN 304 (369)
Q Consensus 226 ~~~~~~~~~~~~~~~~~v~~-~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~ 304 (369)
.......+...+.. +.|++.++++++.++.+++| +.+++ . ..+..+...+..++|+| .
T Consensus 254 ------~~~l~~~~~~~~~~~~~~sdg~~~~~~~~~~~~l~-~~~g~---------~-~~~~~~~~~v~~~~~s~-~--- 312 (347)
T 2gop_A 254 ------VMGILDEVDRGVGQAKIKDGKVYFTLFEEGSVNLY-IWDGE---------I-KPIAKGRHWIMGFDVDE-I--- 312 (347)
T ss_dssp ------EEESSTTCCSEEEEEEEETTEEEEEEEETTEEEEE-EESSS---------E-EEEECSSSEEEEEEESS-S---
T ss_pred ------eEeccccCCcccCCccEEcCcEEEEEecCCcEEEE-EcCCc---------e-EEEecCCCeEEeeeeeC-c---
Confidence 11222344556664 77763378888999999999 87332 2 22222356788899998 3
Q ss_pred EEEEecCCCeE-EEEEcc
Q 017553 305 AAAIGNREGKI-FVWELQ 321 (369)
Q Consensus 305 ~l~~~~~dg~i-~i~d~~ 321 (369)
++++++.++.. .+|.+.
T Consensus 313 ~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 313 VVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEEEECSSSCCEEEEES
T ss_pred EEEEEcCCCChHHheEeC
Confidence 66666666554 677766
No 199
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.67 E-value=1.2e-13 Score=127.35 Aligned_cols=279 Identities=11% Similarity=-0.037 Sum_probs=163.0
Q ss_pred CccEEEEecCC----cEEEEEecC----CceeEEEeeec--cCCcccceeEEEeeecCCCccEEEEeecC-----CeEEE
Q 017553 48 YFNVFATVGGN----RVTVYQCLE----GGVIAALQSYV--DEDKEESFYTVSWACNVDGIPFLVAGGIN-----GIIRV 112 (369)
Q Consensus 48 ~~~~la~~~~~----~v~iw~~~~----~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~g~~~l~~~~~d-----g~i~v 112 (369)
+|++++....+ .-.+|.... +.....+-... ...+...+...+|+ |||+ +|+.+..+ ..|++
T Consensus 117 dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~S--PDG~-~la~~~~~~G~e~~~i~v 193 (741)
T 1yr2_A 117 RGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAAS--DDGR-LLAYSVQDGGSDWRTVKF 193 (741)
T ss_dssp ETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEEC--TTSS-EEEEEEEETTCSEEEEEE
T ss_pred ECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEEC--CCCC-EEEEEEcCCCCceEEEEE
Confidence 57777765422 245565442 23333322111 11122355666676 9999 66655433 35999
Q ss_pred EEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCc--------------EEEEEccCCcE--EEEeeccCCCCCc
Q 017553 113 IDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDES--------------VRLWNVQTGIC--ILIFAGAGGHRNE 176 (369)
Q Consensus 113 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~--------------i~vwd~~~~~~--~~~~~~~~~~~~~ 176 (369)
||+.+++.+.. ..+...+..++|+| + +.|+.++.++. |++|++.++.. ...+. ...+...
T Consensus 194 ~dl~tg~~~~~-~~~~~~~~~~~wsp-D-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~-~~~~~~~ 269 (741)
T 1yr2_A 194 VGVADGKPLAD-ELKWVKFSGLAWLG-N-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFA-TPELPKR 269 (741)
T ss_dssp EETTTCCEEEE-EEEEEESCCCEEST-T-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEEC-CTTCTTC
T ss_pred EECCCCCCCCc-cCCCceeccEEEEC-C-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEec-cCCCCeE
Confidence 99999876543 21222346889999 6 77777766554 89999987652 22222 1133345
Q ss_pred EEEEEecCCCceEEEEEeeCC-----cEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceee-eeeeC
Q 017553 177 VLSVDFHPSDIYRIASCGMDN-----TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDC-NRWLG 250 (369)
Q Consensus 177 v~~~~~~~~~~~~l~~~~~d~-----~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~ 250 (369)
+..+.|+| ++++|+..+.++ .|++||+.++... ....+..+...... +..++
T Consensus 270 ~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~---------------------~~~~l~~~~~~~~~~~~~dg 327 (741)
T 1yr2_A 270 GHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIG---------------------PVTALIPDLKAQWDFVDGVG 327 (741)
T ss_dssp EEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTEEC---------------------CCEEEECSSSSCEEEEEEET
T ss_pred EEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCCCc---------------------ccEEecCCCCceEEEEeccC
Confidence 88999999 887777776544 7999998773110 01122222222222 22347
Q ss_pred cEEEEeec----CCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEcc-CCCc
Q 017553 251 DFILSKSV----DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ-SSPP 325 (369)
Q Consensus 251 ~~l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~-~~~~ 325 (369)
+.|+..+. ++.|.+||+.+.. . . ....+..+...+..+.++ ++ .++++...++..++|.+. ++.
T Consensus 328 ~~l~~~s~~~~~~~~l~~~d~~~~~-~----~--~~~l~~~~~~~l~~~~~~-~~--~lv~~~~~dg~~~l~~~~~~g~- 396 (741)
T 1yr2_A 328 DQLWFVSGDGAPLKKIVRVDLSGST-P----R--FDTVVPESKDNLESVGIA-GN--RLFASYIHDAKSQVLAFDLDGK- 396 (741)
T ss_dssp TEEEEEECTTCTTCEEEEEECSSSS-C----E--EEEEECCCSSEEEEEEEE-BT--EEEEEEEETTEEEEEEEETTSC-
T ss_pred CEEEEEECCCCCCCEEEEEeCCCCc-c----c--cEEEecCCCCeEEEEEEE-CC--EEEEEEEECCEEEEEEEeCCCC-
Confidence 77776665 3459999987642 0 0 122223333445566776 33 377888888887777665 232
Q ss_pred eeEEEeecCCCccceEEEEecCCCCEEE----EeecCCeEEEEecCC
Q 017553 326 VLIARLSHAQSKSPIRQTAMSYDGSTIL----SCCEDGAIWRWDAIP 368 (369)
Q Consensus 326 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~----s~~~dg~i~vw~~~~ 368 (369)
....+.. ...+.+..+.++|+++.|+ +....+.|++||+.+
T Consensus 397 -~~~~l~~-~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 441 (741)
T 1yr2_A 397 -PAGAVSL-PGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPAT 441 (741)
T ss_dssp -EEEECBC-SSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTT
T ss_pred -ceeeccC-CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence 3344431 2346788999999988666 233457899999864
No 200
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.67 E-value=1.1e-12 Score=107.12 Aligned_cols=238 Identities=9% Similarity=-0.007 Sum_probs=159.7
Q ss_pred cccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccce-eeccccceEEEEecCCCCceEEEEeCCCcEEEEEccC
Q 017553 82 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKS-FVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 160 (369)
Q Consensus 82 ~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 160 (369)
....+.++++. ++|. +.++...++.|.+||.. ++.... +..+...+.++++.+ ++.++++...++.|..||..
T Consensus 13 ~~~~~~~i~~d--~~g~-l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~- 86 (299)
T 2z2n_A 13 QDTGPYGITVS--DKGK-VWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISS-DGEVWFTENAANKIGRITKK- 86 (299)
T ss_dssp SSCCEEEEEEC--TTSC-EEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECTT-
T ss_pred cCCCccceEEC--CCCC-EEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECC-CCCEEEeCCCCCeEEEECCC-
Confidence 34567778777 8898 66666667899999987 543221 123456789999999 77887777778899999986
Q ss_pred CcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCC
Q 017553 161 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 240 (369)
Q Consensus 161 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (369)
++. ..+.. ......+..+++.+ ++.++++...++.|..||... ... ........
T Consensus 87 g~~-~~~~~-~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~~g-~~~----------------------~~~~~~~~ 140 (299)
T 2z2n_A 87 GII-KEYTL-PNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITDDG-KIR----------------------EYELPNKG 140 (299)
T ss_dssp SCE-EEEEC-SSTTCCEEEEEECT-TSCEEEEETTTTEEEEECTTC-CEE----------------------EEECSSTT
T ss_pred CcE-EEEeC-CCcCCCceeeEECC-CCCEEEEecCCceEEEECCCC-CEE----------------------EecCCCCC
Confidence 433 23321 12455789999998 788787777788999999832 110 11112233
Q ss_pred Cceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEE
Q 017553 241 NYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW 318 (369)
Q Consensus 241 ~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~ 318 (369)
..+..+.++ +.+.++...++.|..||. +++. ...........+..+++.+++. +.++...++.|.+|
T Consensus 141 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~--------~~~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~ 209 (299)
T 2z2n_A 141 SYPSFITLGSDNALWFTENQNNAIGRITE-SGDI--------TEFKIPTPASGPVGITKGNDDA--LWFVEIIGNKIGRI 209 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE--------EEEECSSTTCCEEEEEECTTSS--EEEEETTTTEEEEE
T ss_pred CCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcE--------EEeeCCCCCCcceeEEECCCCC--EEEEccCCceEEEE
Confidence 456777776 555555556789999998 4431 1111222335577899999875 66666668899999
Q ss_pred EccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEec
Q 017553 319 ELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 366 (369)
Q Consensus 319 d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~ 366 (369)
|. +++.. .+........+.+++++++|+++++...++.|.+||.
T Consensus 210 ~~-~g~~~---~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 210 TT-SGEIT---EFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp CT-TCCEE---EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred CC-CCcEE---EEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence 99 65422 2222234567899999999997777667788999986
No 201
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.63 E-value=5.1e-13 Score=112.79 Aligned_cols=267 Identities=9% Similarity=0.003 Sum_probs=167.2
Q ss_pred cEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEee----------cCCeEEEEEcCCccccceeecc-
Q 017553 59 RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG----------INGIIRVIDVSNEKLHKSFVGH- 127 (369)
Q Consensus 59 ~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~~- 127 (369)
.|.++|..+++.+..+..- ..+ .++++ |||+ .|+++. .++.|.++|..+++.+.++.-.
T Consensus 100 ~VsVID~~t~~vv~~I~vG-----~~P--gia~S--pDgk-~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g 169 (426)
T 3c75_H 100 QQFVIDGSTGRILGMTDGG-----FLP--HPVAA--EDGS-FFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPD 169 (426)
T ss_dssp EEEEEETTTTEEEEEEEEC-----SSC--EEEEC--TTSS-CEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETT
T ss_pred eEEEEECCCCEEEEEEECC-----CCC--ceEEC--CCCC-EEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCC
Confidence 4999999999999888742 223 46666 9999 555554 4678999999999888777521
Q ss_pred ------ccceEEEEecCCCCceEEEEeC--CCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcE
Q 017553 128 ------GDSINEIRTQPLKPSLVVSASK--DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTV 199 (369)
Q Consensus 128 ------~~~v~~~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v 199 (369)
......+.|+| ++++++.+.. ++.|.+.|+.+++.+..+.. .+. ....|.+...+++.+.||++
T Consensus 170 ~~r~~~g~~P~~~~~sp-DGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v----~g~---~~~~p~g~~~~v~~~~dG~~ 241 (426)
T 3c75_H 170 APRFLVGTYQWMNALTP-DNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV----PDC---YHIFPASPTVFYMNCRDGSL 241 (426)
T ss_dssp CCCCCBSCCGGGSEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEEEC----CSE---EEEEEEETTEEEEEETTSSE
T ss_pred ccccccCCCcceEEEcC-CCCEEEEEecCCCCeEEEEECCCCeEEEEEEc----CCc---eeeccCCCcEEEEEcCCCCE
Confidence 12356789999 8888887764 57899999999999888873 121 23334244667777788888
Q ss_pred EEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCce-eeeeee--CcEEEEeecCCeEEEecCCCCCCCCCC
Q 017553 200 KIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV-DCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGE 276 (369)
Q Consensus 200 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~ 276 (369)
.+.+...++...... ..+.....++ ..+.+. +..++.....+.+.+.|..........
T Consensus 242 ~~V~~~~~~v~~~~~-------------------~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~ 302 (426)
T 3c75_H 242 ARVDFADGETKVTNT-------------------EVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRA 302 (426)
T ss_dssp EEEECCTTCCEEEEC-------------------CCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECC
T ss_pred EEEECCCCcEEEEee-------------------eeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEee
Confidence 888884432211100 0000000110 112222 555555567889999998654311000
Q ss_pred Cccceee----eccCCCCCeeEEEEeecCCccEEEEec--------CCCeEEEEEccCCCceeEEEeecCCCccceEEEE
Q 017553 277 GTADILQ----KYPVPECDIWFIKFSCDFHYNAAAIGN--------REGKIFVWELQSSPPVLIARLSHAQSKSPIRQTA 344 (369)
Q Consensus 277 ~~~~~~~----~~~~~~~~i~~~~~s~~~~~~~l~~~~--------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 344 (369)
...... ...........++++++++..+++... ..+.|.++|..+.+ .+..+... .....+.
T Consensus 303 -~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k--vv~~I~vg---~~P~gia 376 (426)
T 3c75_H 303 -PIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE--RINKIELG---HEIDSIN 376 (426)
T ss_dssp -CEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC--EEEEEEEE---EEECEEE
T ss_pred -eeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCe--EEEEEECC---CCcCeEE
Confidence 000000 000001122347899998733333221 24579999999985 44444422 3578999
Q ss_pred ecCCCC-EEEEee-cCCeEEEEecCC
Q 017553 345 MSYDGS-TILSCC-EDGAIWRWDAIP 368 (369)
Q Consensus 345 ~s~~~~-~l~s~~-~dg~i~vw~~~~ 368 (369)
|+|||+ +++++. .++.|.|+|+.+
T Consensus 377 ~spDg~~~lyv~n~~s~~VsVID~~t 402 (426)
T 3c75_H 377 VSQDAEPLLYALSAGTQTLHIYDAAT 402 (426)
T ss_dssp ECCSSSCEEEEEETTTTEEEEEETTT
T ss_pred EccCCCEEEEEEcCCCCeEEEEECCC
Confidence 999999 888888 599999999875
No 202
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.61 E-value=2.1e-12 Score=106.41 Aligned_cols=248 Identities=10% Similarity=0.003 Sum_probs=154.7
Q ss_pred cCCcCeEEEEEeeccCCCccEEEE-------ecCC-cEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCC-CccEE
Q 017553 31 EGKRPLYAVVFNFIDSRYFNVFAT-------VGGN-RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD-GIPFL 101 (369)
Q Consensus 31 ~h~~~v~~~~~s~~~~~~~~~la~-------~~~~-~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-g~~~l 101 (369)
..-....+++|++ ++.++++ ...+ +|.+||..+++... +.......+...+..+++. ++ |. ++
T Consensus 15 ~~~~~~~~~~~~~----~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~~--~~~g~-l~ 86 (314)
T 1pjx_A 15 EDIPGAEGPVFDK----NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTV-ICKPEVNGYGGIPAGCQCD--RDANQ-LF 86 (314)
T ss_dssp CCCTTCEEEEECT----TSCEEEEETTCEETTEECCEEEEECTTTCCEEE-EECCEETTEECCEEEEEEC--SSSSE-EE
T ss_pred ccCCCccCceECC----CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEE-EEecccCCCCCCCceEEEe--cCCCc-EE
Confidence 3344678999997 5788877 3444 49999977766432 2210001133456677776 88 76 44
Q ss_pred EEeecCCeEEEEEcCCccccce-eec----cccceEEEEecCCCCceEEEEeCC---------------CcEEEEEccCC
Q 017553 102 VAGGINGIIRVIDVSNEKLHKS-FVG----HGDSINEIRTQPLKPSLVVSASKD---------------ESVRLWNVQTG 161 (369)
Q Consensus 102 ~~~~~dg~i~vwd~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~~l~s~~~d---------------g~i~vwd~~~~ 161 (369)
++. ..+.|.+||.. ++.... ... ....+.++++.+ ++.++++...+ +.|..+|.. +
T Consensus 87 v~~-~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g 162 (314)
T 1pjx_A 87 VAD-MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G 162 (314)
T ss_dssp EEE-TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S
T ss_pred EEE-CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCC-C
Confidence 444 34479999987 654322 211 124588999999 77777776654 567777765 5
Q ss_pred cEEEEeeccCCCCCcEEEEEec----CCCceE-EEEEeeCCcEEEEEcc-CceeeeeeeeeccCCCCCCCCceeecceee
Q 017553 162 ICILIFAGAGGHRNEVLSVDFH----PSDIYR-IASCGMDNTVKIWSMK-EFWTYVEKSFTWTDLPSKFPTKYVQFPVFI 235 (369)
Q Consensus 162 ~~~~~~~~~~~~~~~v~~~~~~----~~~~~~-l~~~~~d~~v~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (369)
+...... +......++++ | +++. +++...++.|.+||+. .+..... .....
T Consensus 163 ~~~~~~~----~~~~~~~i~~~~~~d~-dg~~l~v~~~~~~~i~~~~~~~~g~~~~~------------------~~~~~ 219 (314)
T 1pjx_A 163 QMIQVDT----AFQFPNGIAVRHMNDG-RPYQLIVAETPTKKLWSYDIKGPAKIENK------------------KVWGH 219 (314)
T ss_dssp CEEEEEE----EESSEEEEEEEECTTS-CEEEEEEEETTTTEEEEEEEEETTEEEEE------------------EEEEE
T ss_pred CEEEecc----CCCCcceEEEecccCC-CCCEEEEEECCCCeEEEEECCCCCccccc------------------eEEEE
Confidence 5443332 34456889999 9 7654 4555567899999986 2211000 01112
Q ss_pred eccCC-Cceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCC
Q 017553 236 ASVHS-NYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE 312 (369)
Q Consensus 236 ~~~~~-~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~d 312 (369)
+..+. ..+..++++ |++.++...++.|.+||..+++ .+..+..+...+.+++|+++++ .++++...+
T Consensus 220 ~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~---------~~~~~~~~~~~~~~i~~~~dg~-~l~v~~~~~ 289 (314)
T 1pjx_A 220 IPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQ---------PKMRIRCPFEKPSNLHFKPQTK-TIFVTEHEN 289 (314)
T ss_dssp CCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBS---------CSEEEECSSSCEEEEEECTTSS-EEEEEETTT
T ss_pred CCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCc---------EeEEEeCCCCCceeEEECCCCC-EEEEEeCCC
Confidence 22233 456677776 6677776678899999987554 2333444456788999999885 244455567
Q ss_pred CeEEEEEccCC
Q 017553 313 GKIFVWELQSS 323 (369)
Q Consensus 313 g~i~i~d~~~~ 323 (369)
+.|..|++...
T Consensus 290 ~~l~~~~~~~~ 300 (314)
T 1pjx_A 290 NAVWKFEWQRN 300 (314)
T ss_dssp TEEEEEECSSC
T ss_pred CeEEEEeCCCC
Confidence 89999998753
No 203
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.60 E-value=2.9e-13 Score=124.72 Aligned_cols=244 Identities=9% Similarity=-0.051 Sum_probs=150.9
Q ss_pred cCCcCeEEEEEeeccCCCccEEEEecCC-----c-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEe
Q 017553 31 EGKRPLYAVVFNFIDSRYFNVFATVGGN-----R-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAG 104 (369)
Q Consensus 31 ~h~~~v~~~~~s~~~~~~~~~la~~~~~-----~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~ 104 (369)
+|...+..++||| ||++||.+..+ . |++||+.+++.+.... ....+..++|+ || + .|+.+
T Consensus 160 ~~~~~~~~~~~SP----DG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~------~~~~~~~~~ws--pD-~-~l~~~ 225 (741)
T 1yr2_A 160 DGATALDAWAASD----DGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL------KWVKFSGLAWL--GN-D-ALLYS 225 (741)
T ss_dssp ---EEEEEEEECT----TSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE------EEEESCCCEES--TT-S-EEEEE
T ss_pred CCCEEEEeEEECC----CCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC------CCceeccEEEE--CC-C-EEEEE
Confidence 3445788999999 68988876542 3 9999999888654311 11123457777 88 7 66666
Q ss_pred ecCC--------------eEEEEEcCCcccc--cee--eccccceEEEEecCCCCceEEEEeCCC-----cEEEEEccCC
Q 017553 105 GING--------------IIRVIDVSNEKLH--KSF--VGHGDSINEIRTQPLKPSLVVSASKDE-----SVRLWNVQTG 161 (369)
Q Consensus 105 ~~dg--------------~i~vwd~~~~~~~--~~~--~~~~~~v~~~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~ 161 (369)
..++ .|++|++.++... ..+ ..+...+..+.|+| ++++|+..+.++ .|++||+.++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~ 304 (741)
T 1yr2_A 226 RFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNG 304 (741)
T ss_dssp ECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETT
T ss_pred EecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCC
Confidence 5544 3899998776532 222 22334588999999 888777766543 8999999877
Q ss_pred --cEEEEeeccCCCCCcEEEEEecCCCceEEEEEee----CCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceee
Q 017553 162 --ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM----DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI 235 (369)
Q Consensus 162 --~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (369)
+....+. .+...+....+ | ++..|+..+. ++.|.+||+.++. . .....
T Consensus 305 ~~~~~~~l~---~~~~~~~~~~~-~-dg~~l~~~s~~~~~~~~l~~~d~~~~~-~--------------------~~~~l 358 (741)
T 1yr2_A 305 KIGPVTALI---PDLKAQWDFVD-G-VGDQLWFVSGDGAPLKKIVRVDLSGST-P--------------------RFDTV 358 (741)
T ss_dssp EECCCEEEE---CSSSSCEEEEE-E-ETTEEEEEECTTCTTCEEEEEECSSSS-C--------------------EEEEE
T ss_pred CCcccEEec---CCCCceEEEEe-c-cCCEEEEEECCCCCCCEEEEEeCCCCc-c--------------------ccEEE
Confidence 4134444 34444444433 6 5555665554 3459999987631 0 01112
Q ss_pred eccCCCceeeeeee-CcEEEEeecCCeEEEecCCC-CCCCCCCCccceeeeccCC-CCCeeEEEEeecCCccEEE--Eec
Q 017553 236 ASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKM-KEQSPGEGTADILQKYPVP-ECDIWFIKFSCDFHYNAAA--IGN 310 (369)
Q Consensus 236 ~~~~~~~v~~~~~~-~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~~~~~~l~--~~~ 310 (369)
+..+...+..+.+. +.++++...|+..++|.+.. +. ....+..+ ...+..+.++|+++..++. +..
T Consensus 359 ~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~---------~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~ 429 (741)
T 1yr2_A 359 VPESKDNLESVGIAGNRLFASYIHDAKSQVLAFDLDGK---------PAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFT 429 (741)
T ss_dssp ECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEETTSC---------EEEECBCSSSCEEEEEECCBTCSCEEEEEEETT
T ss_pred ecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCC---------ceeeccCCCCeEEEEeecCCCCCEEEEEEcCCC
Confidence 23344456667776 55777888899877776542 22 23334432 4567788899988632222 223
Q ss_pred CCCeEEEEEccCCC
Q 017553 311 REGKIFVWELQSSP 324 (369)
Q Consensus 311 ~dg~i~i~d~~~~~ 324 (369)
..++|++||+.+++
T Consensus 430 ~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 430 QPATVLALDPATAK 443 (741)
T ss_dssp EEEEEEEEETTTTE
T ss_pred CCCEEEEEECCCCc
Confidence 45889999998774
No 204
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.59 E-value=1.6e-12 Score=107.19 Aligned_cols=241 Identities=12% Similarity=0.077 Sum_probs=149.2
Q ss_pred eeEEEeeecCCCccEEEE-------eecCCeEEEEEcCCccccceee----ccccceEEEEecCCC-CceEEEEeCCCcE
Q 017553 86 FYTVSWACNVDGIPFLVA-------GGINGIIRVIDVSNEKLHKSFV----GHGDSINEIRTQPLK-PSLVVSASKDESV 153 (369)
Q Consensus 86 v~~~~~~~~~~g~~~l~~-------~~~dg~i~vwd~~~~~~~~~~~----~~~~~v~~~~~~~~~-~~~l~s~~~dg~i 153 (369)
...++|. ++|. ++++ +..++.|.+||..+++...... ++...+..+++++ + +.++++.. .+.|
T Consensus 20 ~~~~~~~--~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~-~~g~l~v~~~-~~~l 94 (314)
T 1pjx_A 20 AEGPVFD--KNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVADM-RLGL 94 (314)
T ss_dssp CEEEEEC--TTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEEET-TTEE
T ss_pred ccCceEC--CCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEec-CCCcEEEEEC-CCCE
Confidence 4567777 8887 7777 6778999999987776532211 2456789999999 6 66555544 4579
Q ss_pred EEEEccCCcEEEE-eeccC-CCCCcEEEEEecCCCceEEEEEeeC---------------CcEEEEEccCceeeeeeeee
Q 017553 154 RLWNVQTGICILI-FAGAG-GHRNEVLSVDFHPSDIYRIASCGMD---------------NTVKIWSMKEFWTYVEKSFT 216 (369)
Q Consensus 154 ~vwd~~~~~~~~~-~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d---------------~~v~i~d~~~~~~~~~~~~~ 216 (369)
.+||.. ++.... ..... .....+.++++++ +++++++...+ +.|..||... ..
T Consensus 95 ~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~~------- 164 (314)
T 1pjx_A 95 LVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QM------- 164 (314)
T ss_dssp EEEETT-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CE-------
T ss_pred EEEeCC-CCEEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCCC-CE-------
Confidence 999988 665433 22110 1224578999999 77777776554 4565555432 10
Q ss_pred ccCCCCCCCCceeecceeeeccCCCceeeeeee------CcEEEEe-ecCCeEEEecCC-CCCCCCCCCccceeeeccCC
Q 017553 217 WTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL------GDFILSK-SVDNEIVLWEPK-MKEQSPGEGTADILQKYPVP 288 (369)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~l~~~-~~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~ 288 (369)
.....+......++++ ++.++.+ ..++.|.+||+. +++. ........+..+
T Consensus 165 -----------------~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~----~~~~~~~~~~~~ 223 (314)
T 1pjx_A 165 -----------------IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKI----ENKKVWGHIPGT 223 (314)
T ss_dssp -----------------EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEE----EEEEEEEECCCC
T ss_pred -----------------EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcc----ccceEEEECCCC
Confidence 0001111223455555 3345444 567899999976 2210 000122233333
Q ss_pred C-CCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEE-EEeecCCeEEEEec
Q 017553 289 E-CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTI-LSCCEDGAIWRWDA 366 (369)
Q Consensus 289 ~-~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~~~dg~i~vw~~ 366 (369)
. .....+++++++. ++++...++.|.+||..+++.. ..+. .+...+.+++|+|+++.| ++...++.|..|++
T Consensus 224 ~~~~p~~i~~d~~G~--l~v~~~~~~~i~~~d~~~g~~~--~~~~--~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~ 297 (314)
T 1pjx_A 224 HEGGADGMDFDEDNN--LLVANWGSSHIEVFGPDGGQPK--MRIR--CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW 297 (314)
T ss_dssp SSCEEEEEEEBTTCC--EEEEEETTTEEEEECTTCBSCS--EEEE--CSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred CCCCCCceEECCCCC--EEEEEcCCCEEEEEcCCCCcEe--EEEe--CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeC
Confidence 2 4567889999885 6666667889999998866433 2333 333678999999999944 55556788999987
Q ss_pred CC
Q 017553 367 IP 368 (369)
Q Consensus 367 ~~ 368 (369)
..
T Consensus 298 ~~ 299 (314)
T 1pjx_A 298 QR 299 (314)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 205
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.59 E-value=1.8e-13 Score=113.90 Aligned_cols=149 Identities=10% Similarity=0.091 Sum_probs=113.9
Q ss_pred CeEEEEEeeccCCCccEEEEecCCcEEEEEecCCceeEE-----EeeeccCCcccceeEEEeeecCCCccEEEEeecCCe
Q 017553 35 PLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAA-----LQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGI 109 (369)
Q Consensus 35 ~v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~ 109 (369)
+++.+++++ ...++++|+.+++.+|++........ ++......... |+.++| ++. +|+++ .++.
T Consensus 39 ~~nlLais~----~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f----d~~-~L~v~-~~~~ 107 (388)
T 1xip_A 39 SLQNLDISN----SKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF----HGD-QVLVS-TRNA 107 (388)
T ss_dssp CCBCEEEET----TTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE----ETT-EEEEE-ESSE
T ss_pred cccEEEEcC----CCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE----CCC-EEEEE-cCCc
Confidence 699999999 57899999999999999764431000 00000002344 888888 676 88888 8899
Q ss_pred EEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceE
Q 017553 110 IRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYR 189 (369)
Q Consensus 110 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 189 (369)
|++||+.+......+..|...+.++.+.+ . .+++++.||.|.+||+.++.... +...|++++|+| .+
T Consensus 108 l~v~dv~sl~~~~~~~~~~~~v~~i~~~~-p--~~av~~~dG~L~v~dl~~~~~~~-------~~~~Vs~v~WSp-kG-- 174 (388)
T 1xip_A 108 LYSLDLEELSEFRTVTSFEKPVFQLKNVN-N--TLVILNSVNDLSALDLRTKSTKQ-------LAQNVTSFDVTN-SQ-- 174 (388)
T ss_dssp EEEEESSSTTCEEEEEECSSCEEEEEECS-S--EEEEEETTSEEEEEETTTCCEEE-------EEESEEEEEECS-SE--
T ss_pred EEEEEchhhhccCccceeecceeeEEecC-C--CEEEEECCCCEEEEEccCCcccc-------ccCCceEEEEcC-Cc--
Confidence 99999988776666777888899888876 2 28889999999999999887643 345799999999 76
Q ss_pred EEEEeeCCcEEEEEccCc
Q 017553 190 IASCGMDNTVKIWSMKEF 207 (369)
Q Consensus 190 l~~~~~d~~v~i~d~~~~ 207 (369)
++.|..||++++|+....
T Consensus 175 ~~vg~~dg~i~~~~~~~~ 192 (388)
T 1xip_A 175 LAVLLKDRSFQSFAWRNG 192 (388)
T ss_dssp EEEEETTSCEEEEEEETT
T ss_pred eEEEEcCCcEEEEcCCCc
Confidence 678899999999988774
No 206
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.58 E-value=3.1e-11 Score=98.58 Aligned_cols=238 Identities=8% Similarity=-0.054 Sum_probs=157.5
Q ss_pred ccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccc-eeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCC
Q 017553 83 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHK-SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG 161 (369)
Q Consensus 83 ~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~ 161 (369)
.....++++. ++|. +.++...++.|.+||.. ++... .+......+..+++.+ ++.++++...++.|..+|.. +
T Consensus 19 ~~~p~~i~~d--~~g~-l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~v~~~d~~-g 92 (300)
T 2qc5_A 19 DSGPYGITSS--EDGK-VWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSS-LGDIWFTENGANKIGKLSKK-G 92 (300)
T ss_dssp TCCEEEEEEC--TTSC-EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECTT-S
T ss_pred CCCcceeeEC--CCCC-EEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECC-CCCEEEEecCCCeEEEECCC-C
Confidence 4456667776 8888 66766678999999977 54332 1222346789999998 77777777667899999987 5
Q ss_pred cEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCC
Q 017553 162 ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN 241 (369)
Q Consensus 162 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (369)
+.. .+.. ......+.++++.+ +++++++...++.|..+|... ... .........
T Consensus 93 ~~~-~~~~-~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g-~~~----------------------~~~~~~~~~ 146 (300)
T 2qc5_A 93 GFT-EYPL-PQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTADG-TIY----------------------EYDLPNKGS 146 (300)
T ss_dssp CEE-EEEC-SSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTTS-CEE----------------------EEECSSTTC
T ss_pred CeE-EecC-CCCCCCCccceECC-CCCEEEEccCCCeEEEECCCC-CEE----------------------EccCCCCCC
Confidence 543 2321 12346789999998 788777776678899998763 211 011112234
Q ss_pred ceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEE
Q 017553 242 YVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE 319 (369)
Q Consensus 242 ~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d 319 (369)
.+..+.++ +++.++...++.|..+|. +++. ...........+..+++.+++. +.++....+.|.+||
T Consensus 147 ~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~--------~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~i~~~~ 215 (300)
T 2qc5_A 147 YPAFITLGSDNALWFTENQNNSIGRITN-TGKL--------EEYPLPTNAAAPVGITSGNDGA--LWFVEIMGNKIGRIT 215 (300)
T ss_dssp CEEEEEECTTSSEEEEETTTTEEEEECT-TCCE--------EEEECSSTTCCEEEEEECTTSS--EEEEETTTTEEEEEC
T ss_pred CceeEEECCCCCEEEEecCCCeEEEECC-CCcE--------EEeeCCCCCCCcceEEECCCCC--EEEEccCCCEEEEEc
Confidence 56677775 565555555788999998 4331 1111222335678899998875 666666678899999
Q ss_pred ccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecC
Q 017553 320 LQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 367 (369)
. +++. ....+. .....+.+++++++|+++++...++.|..|+..
T Consensus 216 ~-~g~~-~~~~~~--~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 216 T-TGEI-SEYDIP--TPNARPHAITAGKNSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp T-TCCE-EEEECS--STTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred C-CCcE-EEEECC--CCCCCceEEEECCCCCEEEeccCCCeEEEECCC
Confidence 8 4432 222222 344678899999999977777677889998863
No 207
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.58 E-value=4.9e-12 Score=107.75 Aligned_cols=259 Identities=10% Similarity=-0.055 Sum_probs=153.9
Q ss_pred cCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCC--eE
Q 017553 34 RPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING--II 110 (369)
Q Consensus 34 ~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg--~i 110 (369)
.....|+|+| +++++++...++ |++||..++........ ..... ++|. ++++ .|+++..++ .|
T Consensus 131 ~~P~~la~d~----~g~lyv~d~~~~~I~~id~~~g~~~~~~~~------~~~~~-ia~~--~~g~-~l~~~d~~~~~~I 196 (409)
T 3hrp_A 131 KYMWGIAAVG----NNTVLAYQRDDPRVRLISVDDNKVTTVHPG------FKGGK-PAVT--KDKQ-RVYSIGWEGTHTV 196 (409)
T ss_dssp CCEEEEEECS----TTEEEEEETTTTEEEEEETTTTEEEEEEET------CCBCB-CEEC--TTSS-EEEEEBSSTTCEE
T ss_pred CCceEEEEeC----CCCEEEEecCCCcEEEEECCCCEEEEeecc------CCCCc-eeEe--cCCC-cEEEEecCCCceE
Confidence 4578999998 578877777666 99999776665444332 11222 6666 8998 777777655 79
Q ss_pred EEEEcCCcccccee----eccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeec--cCCCCCcE-E-EEEe
Q 017553 111 RVIDVSNEKLHKSF----VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAG--AGGHRNEV-L-SVDF 182 (369)
Q Consensus 111 ~vwd~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~~~~~~v-~-~~~~ 182 (369)
.+++...+.....+ ......+.+++++|. ...|+.+..++.|+.||..++.... +.. ..++...- . .++|
T Consensus 197 ~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~-~g~lyv~d~~~~I~~~d~~~~~~~~-~~~~~~~g~~~~~P~~~ia~ 274 (409)
T 3hrp_A 197 YVYMKASGWAPTRIGQLGSTFSGKIGAVALDET-EEWLYFVDSNKNFGRFNVKTQEVTL-IKQLELSGSLGTNPGPYLIY 274 (409)
T ss_dssp EEEEGGGTTCEEEEEECCTTSCSCCCBCEECTT-SSEEEEECTTCEEEEEETTTCCEEE-EEECCCCSCCCCSSCCEEEE
T ss_pred EEEEcCCCceeEEeeeccchhcCCcEEEEEeCC-CCeEEEEECCCcEEEEECCCCCEEE-EecccccCCCCCCccccEEE
Confidence 99997665443333 214456789999994 4445557778899999998776433 210 00222222 3 8999
Q ss_pred cCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEee-cC
Q 017553 183 HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS-VD 259 (369)
Q Consensus 183 ~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~-~d 259 (369)
+|.++.++++-..++.|+.|+........... ...... .. . ......-.....++++ ++++++-. .+
T Consensus 275 ~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g~---~~~~g~---~d-g---~~~~~~~~~P~gia~d~dG~lyvad~~~~ 344 (409)
T 3hrp_A 275 YFVDSNFYMSDQNLSSVYKITPDGECEWFCGS---ATQKTV---QD-G---LREEALFAQPNGMTVDEDGNFYIVDGFKG 344 (409)
T ss_dssp ETTTTEEEEEETTTTEEEEECTTCCEEEEEEC---TTCCSC---BC-E---EGGGCBCSSEEEEEECTTCCEEEEETTTT
T ss_pred eCCCCEEEEEeCCCCEEEEEecCCCEEEEEeC---CCCCCc---CC-C---cccccEeCCCeEEEEeCCCCEEEEeCCCC
Confidence 99567878877778899999877531110000 000000 00 0 0000112345677776 66666666 78
Q ss_pred CeEEEecCCCCCCCCCCCc---cceeee--ccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEc
Q 017553 260 NEIVLWEPKMKEQSPGEGT---ADILQK--YPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL 320 (369)
Q Consensus 260 ~~i~i~d~~~~~~~~~~~~---~~~~~~--~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~ 320 (369)
+.|+.|++.++........ ...... ....-.....+++++++. ++++-..+++|+.+++
T Consensus 345 ~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~--lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 345 YCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGG--YWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSE--EEEEESTTCEEEEEEE
T ss_pred CEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCC--EEEEECCCCeEEEEEe
Confidence 8999999766532100000 000000 000113467899999863 6777778888888775
No 208
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.58 E-value=7.7e-12 Score=106.51 Aligned_cols=244 Identities=9% Similarity=0.015 Sum_probs=156.7
Q ss_pred ceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCC--cEEEEEccCCc
Q 017553 85 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDE--SVRLWNVQTGI 162 (369)
Q Consensus 85 ~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~ 162 (369)
....++|. ++|. ++++...++.|++||..+++....... ..... ++|+| +++.|+++..++ .|.+++...+.
T Consensus 132 ~P~~la~d--~~g~-lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~ 205 (409)
T 3hrp_A 132 YMWGIAAV--GNNT-VLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGW 205 (409)
T ss_dssp CEEEEEEC--STTE-EEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred CceEEEEe--CCCC-EEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCc
Confidence 44556666 8998 777777789999999987765544443 23334 99999 788888887766 79999987766
Q ss_pred EEEEeeccCC-CCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCC
Q 017553 163 CILIFAGAGG-HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN 241 (369)
Q Consensus 163 ~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (369)
....+..... ....+.+++++|.++.+++ +..++.|+.||..+.......... ...+..
T Consensus 206 ~~~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~-------------------~~g~~~ 265 (409)
T 3hrp_A 206 APTRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTLIKQLE-------------------LSGSLG 265 (409)
T ss_dssp CEEEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEEEEECC-------------------CCSCCC
T ss_pred eeEEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEEEeccc-------------------ccCCCC
Confidence 5444411112 4456788999995555444 666889999998874321110000 001111
Q ss_pred ce--eeeeee---CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeec------------cCCCCCeeEEEEeecCCcc
Q 017553 242 YV--DCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY------------PVPECDIWFIKFSCDFHYN 304 (369)
Q Consensus 242 ~v--~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~------------~~~~~~i~~~~~s~~~~~~ 304 (369)
.- ..++|+ +.++++-..++.|+.|+...... .+... ...-.....+++++++.
T Consensus 266 ~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~--------~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-- 335 (409)
T 3hrp_A 266 TNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECE--------WFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-- 335 (409)
T ss_dssp CSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEE--------EEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC--
T ss_pred CCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEE--------EEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC--
Confidence 11 267776 33555556678899998764310 01000 00113467899999986
Q ss_pred EEEEec-CCCeEEEEEccCCCceeEEEeecC-------------CCccceEEEEecCCCCEEEEeecCCeEEEEecC
Q 017553 305 AAAIGN-REGKIFVWELQSSPPVLIARLSHA-------------QSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 305 ~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~-------------~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 367 (369)
++++-. .+++|+.|++.++.. ..+... ..-.....++++++|.++++-..++.|+.++++
T Consensus 336 lyvad~~~~~~I~~~~~~~G~v---~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 336 FYIVDGFKGYCLRKLDILDGYV---STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp EEEEETTTTCEEEEEETTTTEE---EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred EEEEeCCCCCEEEEEECCCCEE---EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence 667777 889999999877732 222210 012458899999999888888888999888763
No 209
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.57 E-value=3.4e-12 Score=105.86 Aligned_cols=289 Identities=13% Similarity=0.019 Sum_probs=171.6
Q ss_pred ccceeeeeecccCCcCeEEEEEeeccCCCccEEEEec-----------CCcEEEEEecCCceeEEEeeeccC--Ccccce
Q 017553 20 KREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVG-----------GNRVTVYQCLEGGVIAALQSYVDE--DKEESF 86 (369)
Q Consensus 20 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~-----------~~~v~iw~~~~~~~~~~~~~~~~~--~~~~~v 86 (369)
....+...++..-..+ . ++++| +|++++++. .+.|.+||..+.+.+..+...... .....-
T Consensus 66 ~~t~~v~~~I~vG~~P-~-va~sp----DG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P 139 (386)
T 3sjl_D 66 GEAGRVIGMIDGGFLP-N-PVVAD----DGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYP 139 (386)
T ss_dssp TTTTEEEEEEEECSSC-E-EEECT----TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCG
T ss_pred CCCCeEEEEEECCCCC-c-EEECC----CCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCC
Confidence 3455666666544445 4 99999 678777665 233999999999988887632100 001122
Q ss_pred eEEEeeecCCCccEEEEeec--CCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccC-CcE
Q 017553 87 YTVSWACNVDGIPFLVAGGI--NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT-GIC 163 (369)
Q Consensus 87 ~~~~~~~~~~g~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~ 163 (369)
..++++ |||+ +|+++.. ++.|.++|+.+++.+.++... +. .. ..|.+...+++.+.||.+.+.++.+ ++.
T Consensus 140 ~~~a~s--pDGk-~lyVan~~~~~~VsVID~~t~~vv~tI~v~-g~--~~-~~P~g~~~~~~~~~DG~~~~v~~~~~g~v 212 (386)
T 3sjl_D 140 WMTSLT--PDGK-TLLFYQFSPAPAVGVVDLEGKAFKRMLDVP-DC--YH-IFPTAPDTFFMHCRDGSLAKVAFGTEGTP 212 (386)
T ss_dssp GGEEEC--TTSS-EEEEEECSSSCEEEEEETTTTEEEEEEECC-SE--EE-EEEEETTEEEEEETTSCEEEEECCSSSCC
T ss_pred ceEEEc--CCCC-EEEEEEcCCCCeEEEEECCCCcEEEEEECC-Cc--ce-eecCCCceeEEECCCCCEEEEECCCCCeE
Confidence 336666 9999 6776653 689999999999998888632 21 12 2343566788889999999999976 554
Q ss_pred EEEeecc-CCCCCcEE-EEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCC
Q 017553 164 ILIFAGA-GGHRNEVL-SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN 241 (369)
Q Consensus 164 ~~~~~~~-~~~~~~v~-~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (369)
....... ..-..++. ...|.+.++++++ .+.+|+|++.|+.+............. .........+.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~-----------~~~~~~g~~p~ 280 (386)
T 3sjl_D 213 EITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALT-----------EAERADGWRPG 280 (386)
T ss_dssp EEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSC-----------HHHHHTTEEEC
T ss_pred EEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccc-----------cccccccccCC
Confidence 3322110 00112222 2456432666555 555899999999764321111110000 00000001112
Q ss_pred ceeeeeee--CcEEEEeec----------CCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEe
Q 017553 242 YVDCNRWL--GDFILSKSV----------DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG 309 (369)
Q Consensus 242 ~v~~~~~~--~~~l~~~~~----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~ 309 (369)
....+.++ ++.++.... .+.|.++|+.+.+ .+..+... ..++.++++++++..++++.
T Consensus 281 g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k---------v~~~i~vg-~~~~~lavs~D~~~~ly~tn 350 (386)
T 3sjl_D 281 GWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE---------RLAKFEMG-HEIDSINVSQDEKPLLYALS 350 (386)
T ss_dssp SSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC---------EEEEEEEE-EEECEEEECSSSSCEEEEEE
T ss_pred CcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCe---------EEEEEECC-CCcceEEECCCCCeEEEEEc
Confidence 22233443 555555432 2579999999887 55555543 36789999999963344445
Q ss_pred cCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCC
Q 017553 310 NREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYD 348 (369)
Q Consensus 310 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 348 (369)
..++.|.++|..+++ .+..+...+| .+.|.+++|
T Consensus 351 ~~~~~VsViD~~t~k--~~~~i~~~~~---p~~l~~s~d 384 (386)
T 3sjl_D 351 TGDKTLYIHDAESGE--ELRSVNQLGH---GPQVITTAD 384 (386)
T ss_dssp TTTTEEEEEETTTCC--EEEEECCCCS---SCCEEEECC
T ss_pred CCCCeEEEEECCCCc--EEEEecCCCC---CceeEECCc
Confidence 668999999999984 5666654433 445666665
No 210
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.57 E-value=4.8e-11 Score=97.34 Aligned_cols=227 Identities=10% Similarity=0.047 Sum_probs=144.7
Q ss_pred cccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecC
Q 017553 29 LQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN 107 (369)
Q Consensus 29 ~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~d 107 (369)
+..+..---+..|+|. .+.++.+...++ |..||..++.. ..+. ....+.++++. ++|+ ++++ . +
T Consensus 8 ~~~~~~~~Egp~w~~~---~~~l~~~d~~~~~i~~~d~~~~~~-~~~~------~~~~~~~i~~~--~dG~-l~v~-~-~ 72 (297)
T 3g4e_A 8 LPENCRCGESPVWEEV---SNSLLFVDIPAKKVCRWDSFTKQV-QRVT------MDAPVSSVALR--QSGG-YVAT-I-G 72 (297)
T ss_dssp ECCCCSBEEEEEEETT---TTEEEEEETTTTEEEEEETTTCCE-EEEE------CSSCEEEEEEB--TTSS-EEEE-E-T
T ss_pred eccCCccccCCeEECC---CCEEEEEECCCCEEEEEECCCCcE-EEEe------CCCceEEEEEC--CCCC-EEEE-E-C
Confidence 4445556678999984 356677766655 99999876654 2222 23467778777 9998 5554 3 5
Q ss_pred CeEEEEEcCCccccceeec----cccceEEEEecCCCCceEEEEeCC---------CcEEEEEccC-CcEEEEeeccCCC
Q 017553 108 GIIRVIDVSNEKLHKSFVG----HGDSINEIRTQPLKPSLVVSASKD---------ESVRLWNVQT-GICILIFAGAGGH 173 (369)
Q Consensus 108 g~i~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~s~~~d---------g~i~vwd~~~-~~~~~~~~~~~~~ 173 (369)
+.|.+||..+++....... ....++.++++| +++++++...+ ..-.+|.+.. ++...... .
T Consensus 73 ~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~----~ 147 (297)
T 3g4e_A 73 TKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFD----Q 147 (297)
T ss_dssp TEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEE----E
T ss_pred CeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEee----c
Confidence 6899999887764322221 124588999999 77766654321 2345555543 33333222 4
Q ss_pred CCcEEEEEecCCCce-EEEEEeeCCcEEEEEcc--CceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee-
Q 017553 174 RNEVLSVDFHPSDIY-RIASCGMDNTVKIWSMK--EFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL- 249 (369)
Q Consensus 174 ~~~v~~~~~~~~~~~-~l~~~~~d~~v~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~- 249 (369)
......++|+| +++ ++++.+.++.|..|++. ++.... ......+..+......++++
T Consensus 148 ~~~pngi~~sp-dg~~lyv~~~~~~~i~~~~~d~~~G~~~~------------------~~~~~~~~~~~~~p~g~~~d~ 208 (297)
T 3g4e_A 148 VDISNGLDWSL-DHKIFYYIDSLSYSVDAFDYDLQTGQISN------------------RRSVYKLEKEEQIPDGMCIDA 208 (297)
T ss_dssp ESBEEEEEECT-TSCEEEEEEGGGTEEEEEEECTTTCCEEE------------------EEEEEECCGGGCEEEEEEEBT
T ss_pred cccccceEEcC-CCCEEEEecCCCCcEEEEeccCCCCcccC------------------cEEEEECCCCCCCCCeeEECC
Confidence 44568999999 665 55666778899999984 321100 01112222334556777776
Q ss_pred -CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEe-ecCCc
Q 017553 250 -GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFS-CDFHY 303 (369)
Q Consensus 250 -~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~~ 303 (369)
|++.++....+.|..||..+++ .+..+..+...+++++|. |+++.
T Consensus 209 ~G~lwva~~~~~~v~~~d~~tG~---------~~~~i~~p~~~~t~~~f~g~d~~~ 255 (297)
T 3g4e_A 209 EGKLWVACYNGGRVIRLDPVTGK---------RLQTVKLPVDKTTSCCFGGKNYSE 255 (297)
T ss_dssp TSCEEEEEETTTEEEEECTTTCC---------EEEEEECSSSBEEEEEEESGGGCE
T ss_pred CCCEEEEEcCCCEEEEEcCCCce---------EEEEEECCCCCceEEEEeCCCCCE
Confidence 6666666677889999998776 566666666778999998 88763
No 211
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.56 E-value=2.3e-13 Score=113.23 Aligned_cols=174 Identities=10% Similarity=-0.002 Sum_probs=126.7
Q ss_pred ceEEEEecCCCCceEEEEeCCCcEEEEEccCCc-----------EEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCc
Q 017553 130 SINEIRTQPLKPSLVVSASKDESVRLWNVQTGI-----------CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNT 198 (369)
Q Consensus 130 ~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 198 (369)
.++.+++++ ...++++|+.+ .+++|++...+ ..... .+.. |+.++| +++.|+++ .++.
T Consensus 39 ~~nlLais~-~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~----~lp~-V~~l~f---d~~~L~v~-~~~~ 107 (388)
T 1xip_A 39 SLQNLDISN-SKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK----EIPD-VIFVCF---HGDQVLVS-TRNA 107 (388)
T ss_dssp CCBCEEEET-TTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE----ECTT-EEEEEE---ETTEEEEE-ESSE
T ss_pred cccEEEEcC-CCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe----eCCC-eeEEEE---CCCEEEEE-cCCc
Confidence 689999999 88899999987 46669976433 11222 2566 999999 55677777 8899
Q ss_pred EEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeeeCcEEEEeecCCeEEEecCCCCCCCCCCCc
Q 017553 199 VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGT 278 (369)
Q Consensus 199 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 278 (369)
|++||+++... ......|...+.++.+....++++..||.+.+||+.+...
T Consensus 108 l~v~dv~sl~~-----------------------~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~------ 158 (388)
T 1xip_A 108 LYSLDLEELSE-----------------------FRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKST------ 158 (388)
T ss_dssp EEEEESSSTTC-----------------------EEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCE------
T ss_pred EEEEEchhhhc-----------------------cCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcc------
Confidence 99999988321 1122344555667666654588899999999999987652
Q ss_pred cceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEee-------cCCCccceEEEEecCCCCE
Q 017553 279 ADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLS-------HAQSKSPIRQTAMSYDGST 351 (369)
Q Consensus 279 ~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------~~~~~~~v~~~~~s~~~~~ 351 (369)
.. ....|.+++|||+| ++.|..||.+++|+....+......+. +.+|...|.++.|.+++.+
T Consensus 159 ---~~----~~~~Vs~v~WSpkG----~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~f 227 (388)
T 1xip_A 159 ---KQ----LAQNVTSFDVTNSQ----LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDF 227 (388)
T ss_dssp ---EE----EEESEEEEEECSSE----EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEE
T ss_pred ---cc----ccCCceEEEEcCCc----eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeE
Confidence 11 23579999999998 566888999999998877421133442 1136688999999999998
Q ss_pred EEE
Q 017553 352 ILS 354 (369)
Q Consensus 352 l~s 354 (369)
+++
T Consensus 228 lv~ 230 (388)
T 1xip_A 228 LAV 230 (388)
T ss_dssp EEE
T ss_pred EEE
Confidence 886
No 212
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.55 E-value=4.7e-11 Score=100.24 Aligned_cols=265 Identities=8% Similarity=-0.077 Sum_probs=158.6
Q ss_pred ceeeeeecccCCcCeEEEEEeeccCCCccEEEEec-----------CCcEEEEEecCCceeEEEeee-cc-CCcccceeE
Q 017553 22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVG-----------GNRVTVYQCLEGGVIAALQSY-VD-EDKEESFYT 88 (369)
Q Consensus 22 ~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~-----------~~~v~iw~~~~~~~~~~~~~~-~~-~~~~~~v~~ 88 (369)
..++..++..-..+ .++|+| +|++++.+. .+.|.+||..+.+.+..+... .. ......-..
T Consensus 56 t~~~~~~i~~g~~p--~i~~sp----Dg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~ 129 (373)
T 2mad_H 56 SGSILGHVNGGFLP--NPVAAH----SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWM 129 (373)
T ss_pred CCeEEEEecCCCCC--CeEECC----CCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccc
Confidence 44555556543444 999999 688888875 233999999888877776532 00 000112234
Q ss_pred EEeeecCCCccEEEEeec--CCeEEEEEcCCccccce-eeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEE
Q 017553 89 VSWACNVDGIPFLVAGGI--NGIIRVIDVSNEKLHKS-FVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICIL 165 (369)
Q Consensus 89 ~~~~~~~~g~~~l~~~~~--dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 165 (369)
+.|+ |||+ +|+++.. ++.|.++| .+++.+.. +.. .. ++.+.|.....+++.+.||.+.++|. +++...
T Consensus 130 ~~~s--pDG~-~l~v~n~~~~~~v~viD-~t~~~~~~~i~~-~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~ 200 (373)
T 2mad_H 130 NANT--PNNA-DLLFFQFAAGPAVGLVV-QGGSSDDQLLSS-PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAG 200 (373)
T ss_pred eEEC--CCCC-EEEEEecCCCCeEEEEE-CCCCEEeEEcCC-Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEE
Confidence 6666 9999 7777663 57899999 99988777 542 22 24455645567788889999999999 887764
Q ss_pred Eeec--cCCCCCc-EEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCc
Q 017553 166 IFAG--AGGHRNE-VLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY 242 (369)
Q Consensus 166 ~~~~--~~~~~~~-v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (369)
.... ......+ .....+.+.++.+++.. .++.+.+.|+..........+..... ........+..
T Consensus 201 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~~v~~~~~~~~~-----------~~~~~~~~p~g 268 (373)
T 2mad_H 201 AGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGATNKAPIDALSG-----------GRKADTWRPGG 268 (373)
T ss_pred EEeccccccCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCcceEeeeeeecCC-----------cccccceecCc
Confidence 3320 0001112 22345666344444444 67899999987632211111110000 00000111222
Q ss_pred eeeeeee--CcEEEEeec----------CCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEec
Q 017553 243 VDCNRWL--GDFILSKSV----------DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN 310 (369)
Q Consensus 243 v~~~~~~--~~~l~~~~~----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~ 310 (369)
...+.++ ++.+++... .+.|.++|+.+.+ .+..+... .....++|+||++. +++++.
T Consensus 269 ~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~---------vv~~i~~g-~~p~~i~~s~Dg~~-~l~v~~ 337 (373)
T 2mad_H 269 WQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQ---------TSSQISLG-HDVDAISVAQDGGP-DLYALS 337 (373)
T ss_pred eEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCE---------EEEEEECC-CCcCeEEECCCCCe-EEEEEc
Confidence 2223343 566655432 3579999998876 45555443 35789999999973 455554
Q ss_pred -CCCeEEEEEccCCC
Q 017553 311 -REGKIFVWELQSSP 324 (369)
Q Consensus 311 -~dg~i~i~d~~~~~ 324 (369)
.++.|.++|..+++
T Consensus 338 ~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 338 AGTEVLHIYDAGAGD 352 (373)
T ss_pred CCCCeEEEEECCCCC
Confidence 68999999999985
No 213
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.52 E-value=5.2e-11 Score=97.14 Aligned_cols=228 Identities=7% Similarity=0.023 Sum_probs=142.6
Q ss_pred EEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEe
Q 017553 88 TVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIF 167 (369)
Q Consensus 88 ~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 167 (369)
...|. +++..++++...++.|+.||..+++. ..+. ....+.+++++| +++++++ . +..|.+||..+++.....
T Consensus 17 gp~w~--~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~-dG~l~v~-~-~~~l~~~d~~~g~~~~~~ 89 (297)
T 3g4e_A 17 SPVWE--EVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQ-SGGYVAT-I-GTKFCALNWKEQSAVVLA 89 (297)
T ss_dssp EEEEE--TTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBT-TSSEEEE-E-TTEEEEEETTTTEEEEEE
T ss_pred CCeEE--CCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECC-CCCEEEE-E-CCeEEEEECCCCcEEEEE
Confidence 36676 75443777878889999999887654 2332 456799999999 7775554 4 568999999887654433
Q ss_pred eccCC-CCCcEEEEEecCCCceEEEEEeeC---------CcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeec
Q 017553 168 AGAGG-HRNEVLSVDFHPSDIYRIASCGMD---------NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS 237 (369)
Q Consensus 168 ~~~~~-~~~~v~~~~~~~~~~~~l~~~~~d---------~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (369)
..... ....+..++++| +++++++...+ ..-.+|.+..... .....
T Consensus 90 ~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-----------------------~~~~~ 145 (297)
T 3g4e_A 90 TVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHH-----------------------VKKYF 145 (297)
T ss_dssp ECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC-----------------------EEEEE
T ss_pred ecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCC-----------------------EEEEe
Confidence 31111 234588999999 77766654332 2345555543110 11111
Q ss_pred cCCCceeeeeee--CcEE-EEeecCCeEEEecCC--CCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCC
Q 017553 238 VHSNYVDCNRWL--GDFI-LSKSVDNEIVLWEPK--MKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE 312 (369)
Q Consensus 238 ~~~~~v~~~~~~--~~~l-~~~~~d~~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~d 312 (369)
.+......++|+ ++.+ ++.+.++.|.+|++. ++.. .....+..+.........+++.+++. +.++....
T Consensus 146 ~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~----~~~~~~~~~~~~~~~p~g~~~d~~G~--lwva~~~~ 219 (297)
T 3g4e_A 146 DQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQI----SNRRSVYKLEKEEQIPDGMCIDAEGK--LWVACYNG 219 (297)
T ss_dssp EEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCE----EEEEEEEECCGGGCEEEEEEEBTTSC--EEEEEETT
T ss_pred eccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcc----cCcEEEEECCCCCCCCCeeEECCCCC--EEEEEcCC
Confidence 222344677776 5555 555667899999874 3321 00112223333334567889999985 66666667
Q ss_pred CeEEEEEccCCCceeEEEeecCCCccceEEEEec-CCCCEEEEee
Q 017553 313 GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMS-YDGSTILSCC 356 (369)
Q Consensus 313 g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~~ 356 (369)
+.|..||..+++ .+..+. .+...+++++|. |+++.|..++
T Consensus 220 ~~v~~~d~~tG~--~~~~i~--~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 220 GRVIRLDPVTGK--RLQTVK--LPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp TEEEEECTTTCC--EEEEEE--CSSSBEEEEEEESGGGCEEEEEE
T ss_pred CEEEEEcCCCce--EEEEEE--CCCCCceEEEEeCCCCCEEEEEc
Confidence 889999998874 444444 333579999998 8887665554
No 214
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.48 E-value=5.2e-12 Score=105.32 Aligned_cols=280 Identities=12% Similarity=0.039 Sum_probs=164.1
Q ss_pred ceeeeeecccCCcCeEEEEEeeccCCCccEEEEec--CCc-EEEEEecCCceeEEEeee--ccCCcccceeEEEeeecCC
Q 017553 22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVG--GNR-VTVYQCLEGGVIAALQSY--VDEDKEESFYTVSWACNVD 96 (369)
Q Consensus 22 ~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~--~~~-v~iw~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~ 96 (369)
.++.+..+. ..+..|+++| +|+++++.. .++ ++||.+.+++ +..+... ....+-..+..+++. ++
T Consensus 8 ~~~~v~~~~---~~p~~va~~~----~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d--~~ 77 (343)
T 2qe8_A 8 RLEVVAELS---LAPGNITLTP----DGRLFLSLHQFYQPEMQVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSD--GN 77 (343)
T ss_dssp CCEEEEEES---SCEEEEEECT----TSCEEEEECGGGCCSCSEEEEETTE-EEESCCCCSSCCCCCSCEEEEEEC--SS
T ss_pred eeEEEEEcC---CCcceEEECC----CCCEEEEeCCCCCCceEEEEECCCC-eecCCCcccCcccceeEeeEEEEc--CC
Confidence 345555443 6789999999 688888863 222 5666665443 3222211 111234567777776 88
Q ss_pred CccEEEEeec-----CCeEEEEEcCCccccceeec------cccceEEEEecCCCCceEEEEe---CCCcEEEEEccCCc
Q 017553 97 GIPFLVAGGI-----NGIIRVIDVSNEKLHKSFVG------HGDSINEIRTQPLKPSLVVSAS---KDESVRLWNVQTGI 162 (369)
Q Consensus 97 g~~~l~~~~~-----dg~i~vwd~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~s~~---~dg~i~vwd~~~~~ 162 (369)
|+ ++++-.. ++.|.+||+.+++.+..+.. +...+..+++++.++..+++.. .++.|.+||+.+++
T Consensus 78 g~-L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~ 156 (343)
T 2qe8_A 78 GI-VWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL 156 (343)
T ss_dssp SE-EEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC
T ss_pred Cc-EEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC
Confidence 87 5555433 57899999998887666542 2235689999984455556655 67899999999888
Q ss_pred EEEEeeccCCCCCcEE-EEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCC
Q 017553 163 CILIFAGAGGHRNEVL-SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN 241 (369)
Q Consensus 163 ~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (369)
..+.+. +|..... ...+.+ ++..+.+...++.++.|..
T Consensus 157 ~~r~~~---~~~~~~~~~~~~~~-~g~~~~~~~~~g~~~~~~~------------------------------------- 195 (343)
T 2qe8_A 157 AARVLQ---GYPGIAPEDIDLVI-DGVPVQIGQPDGTVIRPHL------------------------------------- 195 (343)
T ss_dssp EEEECT---TCTTTSCCSCCCEE-TTEECBEECTTSCEECCCC-------------------------------------
T ss_pred EEEEec---CCCcccccccceeE-CCEEEEeccCCCceeceec-------------------------------------
Confidence 766654 3322110 133444 5555666666666644421
Q ss_pred ceeeeeee--CcEEEEeecCC-eEEEecCCCCCCCCCCCccceeee--ccCCCCCeeEEEEeecCCccEEEEecCCCeEE
Q 017553 242 YVDCNRWL--GDFILSKSVDN-EIVLWEPKMKEQSPGEGTADILQK--YPVPECDIWFIKFSCDFHYNAAAIGNREGKIF 316 (369)
Q Consensus 242 ~v~~~~~~--~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~ 316 (369)
.+..++++ ++.|+.+..++ .+..++........ ......... ...+......+++++++. ++++...++.|.
T Consensus 196 ~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~g~~g~pdgia~d~~G~--l~va~~~~~~V~ 272 (343)
T 2qe8_A 196 GVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQ-LTDAELGSKIERYSEKPICDGISIDKDHN--IYVGDLAHSAIG 272 (343)
T ss_dssp CEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTT-CCHHHHHTTCEEEEECCSCSCEEECTTCC--EEEEEGGGTEEE
T ss_pred ccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCC-CChhhhhcceEecccCCCCceEEECCCCC--EEEEccCCCeEE
Confidence 12345555 66677766655 45444432111000 000000000 001223456789999985 777788889999
Q ss_pred EEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCC
Q 017553 317 VWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDG 359 (369)
Q Consensus 317 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 359 (369)
+||..+++...+ ... .....+.+++|.++++++++.+..+
T Consensus 273 ~~d~~~G~~~~~--~~~-~~~~~p~~va~~~~g~l~v~~~~~~ 312 (343)
T 2qe8_A 273 VITSADRAYKLL--VTD-EKLSWTDSFNFGSDGYLYFDCNQLH 312 (343)
T ss_dssp EEETTTTEEEEE--EEC-GGGSCEEEEEECTTSCEEEEECCGG
T ss_pred EEECCCCCEEEE--EEC-CceecCCeeEECCCCcEEEEeCccc
Confidence 999855532222 211 2235689999999999888876443
No 215
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.47 E-value=6.6e-10 Score=93.93 Aligned_cols=259 Identities=11% Similarity=0.054 Sum_probs=154.0
Q ss_pred cEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccc
Q 017553 50 NVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHG 128 (369)
Q Consensus 50 ~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 128 (369)
..+..++.++ |..+|..+++.+...... ..+...... .++ .+++++.++.|..+|..+++.+.......
T Consensus 104 ~~v~v~~~~g~l~a~d~~tG~~~W~~~~~------~~~~~~p~~--~~~--~v~v~~~~g~l~~~d~~tG~~~W~~~~~~ 173 (376)
T 3q7m_A 104 GHVYIGSEKAQVYALNTSDGTVAWQTKVA------GEALSRPVV--SDG--LVLIHTSNGQLQALNEADGAVKWTVNLDM 173 (376)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEECS------SCCCSCCEE--ETT--EEEEECTTSEEEEEETTTCCEEEEEECCC
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEEeCC------CceEcCCEE--ECC--EEEEEcCCCeEEEEECCCCcEEEEEeCCC
Confidence 4455555555 999999999877655421 111111111 234 68888889999999999998877765432
Q ss_pred cce-----EEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCC----CcEEEEEecC-CCceEEEEEeeCCc
Q 017553 129 DSI-----NEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR----NEVLSVDFHP-SDIYRIASCGMDNT 198 (369)
Q Consensus 129 ~~v-----~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~----~~v~~~~~~~-~~~~~l~~~~~d~~ 198 (369)
... ...... +..++.+..++.|..+|..+|+.+.......... ..+..+...| ..+..++.++.++.
T Consensus 174 ~~~~~~~~~~~~~~---~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~ 250 (376)
T 3q7m_A 174 PSLSLRGESAPTTA---FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGN 250 (376)
T ss_dssp -----CCCCCCEEE---TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSC
T ss_pred CceeecCCCCcEEE---CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcE
Confidence 211 112222 3467778889999999999999888776211000 0000000111 01345667778899
Q ss_pred EEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeeeCcEEEEeecCCeEEEecCCCCCCCCCCCc
Q 017553 199 VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGT 278 (369)
Q Consensus 199 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 278 (369)
+..+|.++++..... . ......+...++.++.++.++.+..+|..+++.
T Consensus 251 l~~~d~~tG~~~w~~-----------------------~--~~~~~~~~~~~~~l~~~~~~g~l~~~d~~tG~~------ 299 (376)
T 3q7m_A 251 LTALDLRSGQIMWKR-----------------------E--LGSVNDFIVDGNRIYLVDQNDRVMALTIDGGVT------ 299 (376)
T ss_dssp EEEEETTTCCEEEEE-----------------------C--CCCEEEEEEETTEEEEEETTCCEEEEETTTCCE------
T ss_pred EEEEECCCCcEEeec-----------------------c--CCCCCCceEECCEEEEEcCCCeEEEEECCCCcE------
Confidence 999999885432211 1 111234445588888889999999999998863
Q ss_pred cceeeecc-CCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceE-EEEecCCCCEEEEee
Q 017553 279 ADILQKYP-VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIR-QTAMSYDGSTILSCC 356 (369)
Q Consensus 279 ~~~~~~~~-~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~s~~ 356 (369)
+-... ............ ++ .|++++.+|.|+.+|..+++......+. ...+. .... .+..|+.++
T Consensus 300 ---~w~~~~~~~~~~~~~~~~-~~---~l~v~~~~g~l~~~d~~tG~~~~~~~~~----~~~~~~~~~~--~~~~l~v~~ 366 (376)
T 3q7m_A 300 ---LWTQSDLLHRLLTSPVLY-NG---NLVVGDSEGYLHWINVEDGRFVAQQKVD----SSGFQTEPVA--ADGKLLIQA 366 (376)
T ss_dssp ---EEEECTTTTSCCCCCEEE-TT---EEEEECTTSEEEEEETTTCCEEEEEECC----TTCBCSCCEE--ETTEEEEEB
T ss_pred ---EEeecccCCCcccCCEEE-CC---EEEEEeCCCeEEEEECCCCcEEEEEecC----CCcceeCCEE--ECCEEEEEe
Confidence 22222 111122222222 23 7888889999999999998643333321 12221 1222 245777888
Q ss_pred cCCeEEEEe
Q 017553 357 EDGAIWRWD 365 (369)
Q Consensus 357 ~dg~i~vw~ 365 (369)
.+|.|+.|+
T Consensus 367 ~~G~l~~~~ 375 (376)
T 3q7m_A 367 KDGTVYSIT 375 (376)
T ss_dssp TTSCEEEEE
T ss_pred CCCEEEEEe
Confidence 999999987
No 216
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.46 E-value=3.5e-10 Score=94.53 Aligned_cols=235 Identities=12% Similarity=0.077 Sum_probs=142.6
Q ss_pred CCCccEEEEeecCCeEEEEEcCCc----cccceee------c-cccceEEEEecCCCCceEEEEeCC------CcEEEEE
Q 017553 95 VDGIPFLVAGGINGIIRVIDVSNE----KLHKSFV------G-HGDSINEIRTQPLKPSLVVSASKD------ESVRLWN 157 (369)
Q Consensus 95 ~~g~~~l~~~~~dg~i~vwd~~~~----~~~~~~~------~-~~~~v~~~~~~~~~~~~l~s~~~d------g~i~vwd 157 (369)
++++.+++.+..++.|+++|+.+. +.++++. . ....-..+...| ++ +++++..+ |.|.++|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCEEEEEC
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCeEEEEE
Confidence 677756777888899999998755 4455552 0 112456778889 67 77776655 7899999
Q ss_pred ccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEe-------------------eCCcEEEEEccCceeeeeeeeecc
Q 017553 158 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG-------------------MDNTVKIWSMKEFWTYVEKSFTWT 218 (369)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-------------------~d~~v~i~d~~~~~~~~~~~~~~~ 218 (369)
..+++.+..+........--+.+.|+| +++.+++.. .+.+|.+||+.+.+...
T Consensus 171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~------- 242 (462)
T 2ece_A 171 HYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH------- 242 (462)
T ss_dssp TTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE-------
T ss_pred CCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee-------
Confidence 999999998873212223345688899 777777774 36899999998742211
Q ss_pred CCCCCCCCceeecceeeecc--CCCceeeeee--e--CcEEEEee------cCCeEEEecCCCCCCCCCC----Ccccee
Q 017553 219 DLPSKFPTKYVQFPVFIASV--HSNYVDCNRW--L--GDFILSKS------VDNEIVLWEPKMKEQSPGE----GTADIL 282 (369)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~--~--~~~l~~~~------~d~~i~i~d~~~~~~~~~~----~~~~~~ 282 (369)
.+.. .......+.| + ++++++++ .+++|.+|....+...... ...+..
T Consensus 243 ----------------tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~ 306 (462)
T 2ece_A 243 ----------------SLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLE 306 (462)
T ss_dssp ----------------EEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECC
T ss_pred ----------------EEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccc
Confidence 1111 0112222323 3 66666555 4567776655432100000 000000
Q ss_pred eec-------cCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEcc-CCCceeEEEeecCCC------------ccceEE
Q 017553 283 QKY-------PVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ-SSPPVLIARLSHAQS------------KSPIRQ 342 (369)
Q Consensus 283 ~~~-------~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~------------~~~v~~ 342 (369)
..+ .........+.+|+|++. +.++.-..+.|.+||+. ...++.+..+...+. .+....
T Consensus 307 ~~lp~~~~~f~~~~~~pa~I~lS~DGrf-LYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~ 385 (462)
T 2ece_A 307 GNLPEILKPFKAVPPLVTDIDISLDDKF-LYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQM 385 (462)
T ss_dssp SSCCGGGGGGTEECCCCCCEEECTTSCE-EEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCC
T ss_pred ccccccccccccCCCceeEEEECCCCCE-EEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCE
Confidence 000 000245678999999983 33444457899999986 334556666553221 013578
Q ss_pred EEecCCCCEEEEee
Q 017553 343 TAMSYDGSTILSCC 356 (369)
Q Consensus 343 ~~~s~~~~~l~s~~ 356 (369)
++++|||++|+++.
T Consensus 386 ~~lSpDGk~LyVaN 399 (462)
T 2ece_A 386 LEISRDGRRVYVTN 399 (462)
T ss_dssp EEECTTSSEEEEEC
T ss_pred EEEcCCCCEEEEEc
Confidence 99999999999888
No 217
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.44 E-value=6.3e-11 Score=108.25 Aligned_cols=246 Identities=8% Similarity=0.002 Sum_probs=145.2
Q ss_pred ccCCcCeEEEEEeeccCCCccEEEEec----CC-c-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEE
Q 017553 30 QEGKRPLYAVVFNFIDSRYFNVFATVG----GN-R-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVA 103 (369)
Q Consensus 30 ~~h~~~v~~~~~s~~~~~~~~~la~~~----~~-~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~ 103 (369)
.+|...+..++||| +|++||.+. .+ . |++||+.+++.+.... .......++|+ ||+ .|+.
T Consensus 125 ~~~~~~l~~~~~Sp----Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~------~~~k~~~~~Ws---Dg~-~l~y 190 (693)
T 3iuj_A 125 PDGTTALDQLSFSR----DGRILAYSLSLAGSDWREIHLMDVESKQPLETPL------KDVKFSGISWL---GNE-GFFY 190 (693)
T ss_dssp TTSCCEEEEEEECT----TSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE------EEEESCCCEEE---TTT-EEEE
T ss_pred CCCcEEEEEEEECC----CCCEEEEEEecCCCceEEEEEEECCCCCCCcccc------CCceeccEEEe---CCC-EEEE
Confidence 34666788999999 688888432 22 3 9999999988654311 11112345665 677 5666
Q ss_pred eecCC-------------eEEEEEcCCccc----cceeec-cccceEEEEecCCCCceEEE-EeC---CCcEEEEEccCC
Q 017553 104 GGING-------------IIRVIDVSNEKL----HKSFVG-HGDSINEIRTQPLKPSLVVS-ASK---DESVRLWNVQTG 161 (369)
Q Consensus 104 ~~~dg-------------~i~vwd~~~~~~----~~~~~~-~~~~v~~~~~~~~~~~~l~s-~~~---dg~i~vwd~~~~ 161 (369)
++.+. .|++|++.++.. +..... |...+..+.|+| ++++|+. .+. +..|+++|+.++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~~ 269 (693)
T 3iuj_A 191 SSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE-DDRFLLISAANSTSGNRLYVKDLSQE 269 (693)
T ss_dssp EESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT-TSCEEEEEEESSSSCCEEEEEETTST
T ss_pred EEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC-CCCEEEEEEccCCCCcEEEEEECCCC
Confidence 65553 499999987653 223333 445578899999 6776643 332 358999999876
Q ss_pred c-EEEEeeccCCCCCcEEEEEecCCCceEEEEEeeC---CcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeec
Q 017553 162 I-CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD---NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS 237 (369)
Q Consensus 162 ~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (369)
. ....+. .+....... ++++++.+++....+ +.|..+|+.++.. .....+.
T Consensus 270 ~~~~~~l~---~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~---------------------~~~~~l~ 324 (693)
T 3iuj_A 270 NAPLLTVQ---GDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGP---------------------AHWRDLI 324 (693)
T ss_dssp TCCCEEEE---CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCG---------------------GGCEEEE
T ss_pred CCceEEEe---CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc---------------------cccEEEe
Confidence 3 334444 355555554 445366666665544 5788888877321 0112223
Q ss_pred cCCCceeeeeeeCcEEEEeec-CC--eEEEecCCCCCCCCCCCccceeeeccC-CCCCeeEEEEeecCCccEEEEec---
Q 017553 238 VHSNYVDCNRWLGDFILSKSV-DN--EIVLWEPKMKEQSPGEGTADILQKYPV-PECDIWFIKFSCDFHYNAAAIGN--- 310 (369)
Q Consensus 238 ~~~~~v~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~~~l~~~~--- 310 (369)
.|...+..+...++.|+.... ++ .|++|++.... ...+.. ....+..+.++++++. ++++.+
T Consensus 325 ~~~~~~~~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~----------~~~l~~p~~~~~~~~~~~~d~~~-l~~~~ss~~ 393 (693)
T 3iuj_A 325 PERQQVLTVHSGSGYLFAEYMVDATARVEQFDYEGKR----------VREVALPGLGSVSGFNGKHDDPA-LYFGFENYA 393 (693)
T ss_dssp CCCSSCEEEEEETTEEEEEEEETTEEEEEEECTTSCE----------EEEECCSSSSEEEECCCCTTCSC-EEEEEECSS
T ss_pred cCCCCEEEEEEECCEEEEEEEECCeeEEEEEECCCCe----------eEEeecCCCceEEeeecCCCCCE-EEEEecCCC
Confidence 333333355555777766555 44 68899987542 222222 2234556667777763 333222
Q ss_pred CCCeEEEEEccCCCce
Q 017553 311 REGKIFVWELQSSPPV 326 (369)
Q Consensus 311 ~dg~i~i~d~~~~~~~ 326 (369)
.-+.++.||+.+++..
T Consensus 394 tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 394 QPPTLYRFEPKSGAIS 409 (693)
T ss_dssp SCCEEEEECTTTCCEE
T ss_pred CCCEEEEEECCCCeEE
Confidence 2378999999887543
No 218
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.43 E-value=2e-09 Score=89.00 Aligned_cols=218 Identities=13% Similarity=-0.043 Sum_probs=132.7
Q ss_pred cCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEE
Q 017553 34 RPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRV 112 (369)
Q Consensus 34 ~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~v 112 (369)
....+.+|+|+ .+.++.+...++ |..||..+++. ..+. ....+.++++. ++|+ ++++ +.+ .|.+
T Consensus 49 ~~~egp~~~~~---~~~l~~~d~~~~~i~~~d~~~~~~-~~~~------~~~~v~~i~~~--~dg~-l~v~-~~~-gl~~ 113 (326)
T 2ghs_A 49 LLGEGPTFDPA---SGTAWWFNILERELHELHLASGRK-TVHA------LPFMGSALAKI--SDSK-QLIA-SDD-GLFL 113 (326)
T ss_dssp SBEEEEEEETT---TTEEEEEEGGGTEEEEEETTTTEE-EEEE------CSSCEEEEEEE--ETTE-EEEE-ETT-EEEE
T ss_pred CCCcCCeEeCC---CCEEEEEECCCCEEEEEECCCCcE-EEEE------CCCcceEEEEe--CCCe-EEEE-ECC-CEEE
Confidence 34567889983 256666665555 99999776543 2222 23467788877 8897 5554 344 4999
Q ss_pred EEcCCccccceeec----cccceEEEEecCCCCceEEEEeC------CCcEEEEEccCCcEEEEeeccCCCCCcEEEEEe
Q 017553 113 IDVSNEKLHKSFVG----HGDSINEIRTQPLKPSLVVSASK------DESVRLWNVQTGICILIFAGAGGHRNEVLSVDF 182 (369)
Q Consensus 113 wd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~ 182 (369)
||..+++....... ....+.+++++| +++++++... .+.|..++ +++... +. .+......++|
T Consensus 114 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~---~~~~~~~~i~~ 186 (326)
T 2ghs_A 114 RDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LF---ADISIPNSICF 186 (326)
T ss_dssp EETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EE---EEESSEEEEEE
T ss_pred EECCCCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-ee---CCCcccCCeEE
Confidence 99877764322111 124688999999 7776665432 23455555 454333 32 13345678999
Q ss_pred cCCCceEE-EEEeeCCcEEEEEcc--Cc-eeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEe
Q 017553 183 HPSDIYRI-ASCGMDNTVKIWSMK--EF-WTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSK 256 (369)
Q Consensus 183 ~~~~~~~l-~~~~~d~~v~i~d~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~ 256 (369)
+| +++.+ ++...++.|.+||+. ++ .... ......+.........+.++ |.+.++.
T Consensus 187 s~-dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~------------------~~~~~~~~~~~~~p~gi~~d~~G~lwva~ 247 (326)
T 2ghs_A 187 SP-DGTTGYFVDTKVNRLMRVPLDARTGLPTGK------------------AEVFIDSTGIKGGMDGSVCDAEGHIWNAR 247 (326)
T ss_dssp CT-TSCEEEEEETTTCEEEEEEBCTTTCCBSSC------------------CEEEEECTTSSSEEEEEEECTTSCEEEEE
T ss_pred cC-CCCEEEEEECCCCEEEEEEcccccCCcccC------------------ceEEEECCCCCCCCCeeEECCCCCEEEEE
Confidence 99 66544 555567899999986 32 1000 00111122223445667776 5566655
Q ss_pred ecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEe-ecCC
Q 017553 257 SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFS-CDFH 302 (369)
Q Consensus 257 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~ 302 (369)
..++.|..||.. ++ .+..+..+...+.+++|+ ++++
T Consensus 248 ~~~~~v~~~d~~-g~---------~~~~i~~~~~~~~~~af~g~d~~ 284 (326)
T 2ghs_A 248 WGEGAVDRYDTD-GN---------HIARYEVPGKQTTCPAFIGPDAS 284 (326)
T ss_dssp ETTTEEEEECTT-CC---------EEEEEECSCSBEEEEEEESTTSC
T ss_pred eCCCEEEEECCC-CC---------EEEEEECCCCCcEEEEEecCCCC
Confidence 567889999983 33 345555555678999998 7776
No 219
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.43 E-value=1e-09 Score=90.70 Aligned_cols=225 Identities=9% Similarity=-0.033 Sum_probs=136.5
Q ss_pred EEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEe
Q 017553 88 TVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIF 167 (369)
Q Consensus 88 ~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 167 (369)
...|+ |++..++++...++.|..||..+++.. .+. ....+.+++|+| +++++++. .+ .|.+||..+++.....
T Consensus 53 gp~~~--~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~-dg~l~v~~-~~-gl~~~d~~~g~~~~~~ 125 (326)
T 2ghs_A 53 GPTFD--PASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKIS-DSKQLIAS-DD-GLFLRDTATGVLTLHA 125 (326)
T ss_dssp EEEEE--TTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEE-TTEEEEEE-TT-EEEEEETTTCCEEEEE
T ss_pred CCeEe--CCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeC-CCeEEEEE-CC-CEEEEECCCCcEEEEe
Confidence 35676 875547778778899999998876532 332 346799999999 77766654 44 4999999888754332
Q ss_pred eccCC-CCCcEEEEEecCCCceEEEEEeeC------CcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCC
Q 017553 168 AGAGG-HRNEVLSVDFHPSDIYRIASCGMD------NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 240 (369)
Q Consensus 168 ~~~~~-~~~~v~~~~~~~~~~~~l~~~~~d------~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (369)
..... ....+.+++++| +++++++...+ +.|..++ .++. ..+..+.
T Consensus 126 ~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~~------------------------~~~~~~~ 178 (326)
T 2ghs_A 126 ELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGKV------------------------TKLFADI 178 (326)
T ss_dssp CSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTEE------------------------EEEEEEE
T ss_pred eCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCcE------------------------EEeeCCC
Confidence 21101 124688999999 77766654322 3444444 3211 0011112
Q ss_pred Cceeeeeee--CcEEE-EeecCCeEEEecCC--CC-CCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCe
Q 017553 241 NYVDCNRWL--GDFIL-SKSVDNEIVLWEPK--MK-EQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGK 314 (369)
Q Consensus 241 ~~v~~~~~~--~~~l~-~~~~d~~i~i~d~~--~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~ 314 (369)
.....++|+ ++.++ +...++.|.+|++. ++ ... ....+..+.........+++.+++. +.++...++.
T Consensus 179 ~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~----~~~~~~~~~~~~~~p~gi~~d~~G~--lwva~~~~~~ 252 (326)
T 2ghs_A 179 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTG----KAEVFIDSTGIKGGMDGSVCDAEGH--IWNARWGEGA 252 (326)
T ss_dssp SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSS----CCEEEEECTTSSSEEEEEEECTTSC--EEEEEETTTE
T ss_pred cccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCccc----CceEEEECCCCCCCCCeeEECCCCC--EEEEEeCCCE
Confidence 234567776 55554 44557899999986 33 211 0112222222234456788888885 5555555688
Q ss_pred EEEEEccCCCceeEEEeecCCCccceEEEEec-CCCCEEEEeec
Q 017553 315 IFVWELQSSPPVLIARLSHAQSKSPIRQTAMS-YDGSTILSCCE 357 (369)
Q Consensus 315 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~~~ 357 (369)
|.+||. +++ .+..+. .....+++++|+ ++++.|+.++.
T Consensus 253 v~~~d~-~g~--~~~~i~--~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 253 VDRYDT-DGN--HIARYE--VPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp EEEECT-TCC--EEEEEE--CSCSBEEEEEEESTTSCEEEEEEB
T ss_pred EEEECC-CCC--EEEEEE--CCCCCcEEEEEecCCCCEEEEEec
Confidence 999998 443 344444 333569999998 88876655443
No 220
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.43 E-value=2.4e-11 Score=100.97 Aligned_cols=255 Identities=7% Similarity=-0.083 Sum_probs=156.6
Q ss_pred cEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEee----------cCCeEEEEEcCCccccceeecc-
Q 017553 59 RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG----------INGIIRVIDVSNEKLHKSFVGH- 127 (369)
Q Consensus 59 ~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~~- 127 (369)
.|.++|..+++.+..+..- ..+ .+.++ |||+ .++++. .++.|.+||+.+++.+.++...
T Consensus 47 ~vsvID~~t~~v~~~i~vG-----~~P--~i~~s--pDg~-~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~ 116 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGA-----FLS--LAVAG--HSGS-DFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPD 116 (368)
T ss_dssp EEEEEETTTTEEEEEEEEC-----TTC--EEEEC--TTSS-CEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETT
T ss_pred eEEEEECCCCeEEEEEeCC-----CCC--ceEEC--CCCC-EEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCC
Confidence 6789999999999888742 223 46666 9999 566654 4688999999999999888643
Q ss_pred ------ccceEEEEecCCCCceEEEEeC--CCcEEE--EEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCC
Q 017553 128 ------GDSINEIRTQPLKPSLVVSASK--DESVRL--WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN 197 (369)
Q Consensus 128 ------~~~v~~~~~~~~~~~~l~s~~~--dg~i~v--wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~ 197 (369)
......++++| ++++++.+.. +..|.+ +|..+ +..+.. .+. ..+.|.+...+++.+.|+
T Consensus 117 ~~~~~~g~~P~~ia~Sp-DGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v----~~~---~~~~p~g~~~~~~~~~dg 185 (368)
T 1mda_H 117 APRFSVGPRVHIIGNCA-SSACLLFFLFGSSAAAGLSVPGASD---DQLTKS----ASC---FHIHPGAAATHYLGSCPA 185 (368)
T ss_dssp SCSCCBSCCTTSEEECT-TSSCEEEEECSSSCEEEEEETTTEE---EEEEEC----SSC---CCCEEEETTEEECCCCTT
T ss_pred ccccccCCCcceEEEcC-CCCEEEEEccCCCCeEEEEEEchhh---ceEEEC----CCc---eEEccCCCeEEEEEcCCC
Confidence 12456899999 8888887764 467888 99877 444442 111 123343445666777889
Q ss_pred cEEEEEccC-----ceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeeeCcEEEEeecCCeEEEecCCCCCC
Q 017553 198 TVKIWSMKE-----FWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQ 272 (369)
Q Consensus 198 ~v~i~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 272 (369)
.+.+.|+.. ++...... .. +.....+. . ...+..++..+. +.+.+.|......
T Consensus 186 ~~~~vd~~~~~~~~~~v~~~~t-----------------~~--i~vg~~P~-~-~~~~~~~~~vs~-~~V~viD~~~~~~ 243 (368)
T 1mda_H 186 SLAASDLAAAPAAAGIVGAQCT-----------------GA--QNCSSQAA-Q-ANYPGMLVWAVA-SSILQGDIPAAGA 243 (368)
T ss_dssp SCEEEECCSSCCCCEECCCCSC-----------------TT--SCBCSCCE-E-ETTTTEEEECBS-SCCEEEECCSSCC
T ss_pred CEEEEECccccccCCeEEEEee-----------------ee--eeCCCCcc-c-cccCCEEEEEcC-CEEEEEECCCCcc
Confidence 988888876 21110000 00 00001111 1 112455555555 8899999865321
Q ss_pred CCCCCccceeeeccCC----------CCCeeEEEEeecCCccEEEEe-c-C-----CCeEEEEEccCCCceeEEEeecCC
Q 017553 273 SPGEGTADILQKYPVP----------ECDIWFIKFSCDFHYNAAAIG-N-R-----EGKIFVWELQSSPPVLIARLSHAQ 335 (369)
Q Consensus 273 ~~~~~~~~~~~~~~~~----------~~~i~~~~~s~~~~~~~l~~~-~-~-----dg~i~i~d~~~~~~~~~~~~~~~~ 335 (369)
. .+..+... ......++++|+++..+++.. . . ++.+.++|+.+.+ .+..+...
T Consensus 244 ~-------v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~--vv~~i~vg- 313 (368)
T 1mda_H 244 T-------MKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ--TSGPISNG- 313 (368)
T ss_dssp E-------EECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC--EEECCEEE-
T ss_pred e-------EEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCe--EEEEEECC-
Confidence 0 11111110 011223689999973222222 1 2 2356699999985 44444422
Q ss_pred CccceEEEEecCCCC-EEEEee-cCCeEEEEecCC
Q 017553 336 SKSPIRQTAMSYDGS-TILSCC-EDGAIWRWDAIP 368 (369)
Q Consensus 336 ~~~~v~~~~~s~~~~-~l~s~~-~dg~i~vw~~~~ 368 (369)
.....++|+|||+ ++++.. .++.|.++|+.+
T Consensus 314 --~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t 346 (368)
T 1mda_H 314 --HDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS 346 (368)
T ss_dssp --EEECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred --CCcceEEECCCCCEEEEEccCCCCeEEEEECCC
Confidence 3578999999997 456666 589999999875
No 221
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.42 E-value=2.2e-10 Score=93.79 Aligned_cols=230 Identities=7% Similarity=-0.029 Sum_probs=141.7
Q ss_pred eEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEE
Q 017553 87 YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILI 166 (369)
Q Consensus 87 ~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 166 (369)
....|. ++|+.+++++..++.|..|+. +++ ...+..+...+..+++++ +++++++...++.|.+|+.. ++....
T Consensus 48 egp~~~--~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~-dG~l~v~~~~~~~v~~~~~~-g~~~~~ 121 (305)
T 3dr2_A 48 EGPAWW--EAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDA-QQRLVHCEHGRRAITRSDAD-GQAHLL 121 (305)
T ss_dssp EEEEEE--GGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred cCCeEe--CCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECC-CCCEEEEECCCCEEEEECCC-CCEEEE
Confidence 346777 888757778888899999997 444 345555667789999999 77777666666889999986 554332
Q ss_pred eeccCC-CCCcEEEEEecCCCceEEEE----Eee-------------CCcEEEEEccCceeeeeeeeeccCCCCCCCCce
Q 017553 167 FAGAGG-HRNEVLSVDFHPSDIYRIAS----CGM-------------DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKY 228 (369)
Q Consensus 167 ~~~~~~-~~~~v~~~~~~~~~~~~l~~----~~~-------------d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (369)
.....+ ....+.++++.| +++++++ |.. .+.|..||..++..
T Consensus 122 ~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~------------------- 181 (305)
T 3dr2_A 122 VGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL------------------- 181 (305)
T ss_dssp ECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC-------------------
T ss_pred EeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE-------------------
Confidence 221111 123467899999 8887776 321 23566666544211
Q ss_pred eecceeeeccCCCceeeeeee--CcEEEEeecC------CeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeec
Q 017553 229 VQFPVFIASVHSNYVDCNRWL--GDFILSKSVD------NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCD 300 (369)
Q Consensus 229 ~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 300 (369)
.... .......++|+ ++.|+.+... +.|.+|++..... ........ ........+++.++
T Consensus 182 -----~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l----~~~~~~~~--~~~~~pdgi~~d~~ 249 (305)
T 3dr2_A 182 -----QRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGAL----HDRRHFAS--VPDGLPDGFCVDRG 249 (305)
T ss_dssp -----EEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEE----EEEEEEEC--CSSSCCCSEEECTT
T ss_pred -----EEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCc----cCCeEEEE--CCCCCCCeEEECCC
Confidence 0111 22334567776 6667666554 6899999875420 00001111 12234567889998
Q ss_pred CCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEe
Q 017553 301 FHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 365 (369)
Q Consensus 301 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~ 365 (369)
++ |.+++.+ .|.+|+.... .+..+... ..+..++|+|+++.|..++.++ ++.++
T Consensus 250 G~---lwv~~~~-gv~~~~~~g~---~~~~~~~~---~~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 250 GW---LWSSSGT-GVCVFDSDGQ---LLGHIPTP---GTASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp SC---EEECCSS-EEEEECTTSC---EEEEEECS---SCCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred CC---EEEecCC-cEEEECCCCC---EEEEEECC---CceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 85 4444444 5999998433 34444422 2588899999998888887764 44444
No 222
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.41 E-value=7.5e-11 Score=107.77 Aligned_cols=241 Identities=11% Similarity=0.069 Sum_probs=141.4
Q ss_pred cceeEEEeeecCCCccEEEE-----eecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCC-------
Q 017553 84 ESFYTVSWACNVDGIPFLVA-----GGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDE------- 151 (369)
Q Consensus 84 ~~v~~~~~~~~~~g~~~l~~-----~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg------- 151 (369)
..+..++|+ |||+ +|+- |+....|++||+.+++.+... .+......++|+ |++.|+.++.+.
T Consensus 129 ~~l~~~~~S--pDg~-~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws--Dg~~l~y~~~~~~~~~~~~ 202 (693)
T 3iuj_A 129 TALDQLSFS--RDGR-ILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL--GNEGFFYSSYDKPDGSELS 202 (693)
T ss_dssp CEEEEEEEC--TTSS-EEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE--TTTEEEEEESSCCC-----
T ss_pred EEEEEEEEC--CCCC-EEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe--CCCEEEEEEecCccccccc
Confidence 345556665 9999 6663 333357999999998854431 111123578899 455666666553
Q ss_pred ------cEEEEEccCCcE--EEEeeccCC-CCCcEEEEEecCCCceEEEEEee----CCcEEEEEccCceeeeeeeeecc
Q 017553 152 ------SVRLWNVQTGIC--ILIFAGAGG-HRNEVLSVDFHPSDIYRIASCGM----DNTVKIWSMKEFWTYVEKSFTWT 218 (369)
Q Consensus 152 ------~i~vwd~~~~~~--~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~----d~~v~i~d~~~~~~~~~~~~~~~ 218 (369)
.|++|++.++.. ...+. ... |......+.|+| ++++|+.... +..|+++|+.++..
T Consensus 203 ~~~~~~~v~~~~lgt~~~~~~~v~~-~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~~~~--------- 271 (693)
T 3iuj_A 203 ARTDQHKVYFHRLGTAQEDDRLVFG-AIPAQHHRYVGATVTE-DDRFLLISAANSTSGNRLYVKDLSQENA--------- 271 (693)
T ss_dssp --CCCCEEEEEETTSCGGGCEEEES-CSGGGCCSEEEEEECT-TSCEEEEEEESSSSCCEEEEEETTSTTC---------
T ss_pred ccCCCcEEEEEECCCCcccceEEEe-cCCCCCeEEEEEEEcC-CCCEEEEEEccCCCCcEEEEEECCCCCC---------
Confidence 399999987653 22332 112 344578899999 6666644432 24799999876321
Q ss_pred CCCCCCCCceeecceeeeccCCCceee-eeeeCcEEE-EeecC---CeEEEecCCCCCCCCCCCccceeeeccCCCCCee
Q 017553 219 DLPSKFPTKYVQFPVFIASVHSNYVDC-NRWLGDFIL-SKSVD---NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIW 293 (369)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~l~-~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~ 293 (369)
....+..+...... +...++.|+ ....+ +.|..+|+.+.... ....+..+...+.
T Consensus 272 -------------~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~-------~~~~l~~~~~~~~ 331 (693)
T 3iuj_A 272 -------------PLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA-------HWRDLIPERQQVL 331 (693)
T ss_dssp -------------CCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGG-------GCEEEECCCSSCE
T ss_pred -------------ceEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc-------ccEEEecCCCCEE
Confidence 12223333333333 223355444 43333 57899998875410 1122333333343
Q ss_pred EEEEeecCCccEEEEecCCC--eEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecC----CeEEEEecC
Q 017553 294 FIKFSCDFHYNAAAIGNREG--KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCED----GAIWRWDAI 367 (369)
Q Consensus 294 ~~~~s~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----g~i~vw~~~ 367 (369)
.|+++++ .++++...++ .|++||+..+. ...+.. ...+.+..+.+++++..|+....+ +.|+.||+.
T Consensus 332 --~~s~~g~-~lv~~~~~~g~~~l~~~d~~g~~---~~~l~~-p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~ 404 (693)
T 3iuj_A 332 --TVHSGSG-YLFAEYMVDATARVEQFDYEGKR---VREVAL-PGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPK 404 (693)
T ss_dssp --EEEEETT-EEEEEEEETTEEEEEEECTTSCE---EEEECC-SSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred --EEEEECC-EEEEEEEECCeeEEEEEECCCCe---eEEeec-CCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECC
Confidence 8999987 2334444454 68899987542 233332 233567788889998877666554 789999875
Q ss_pred C
Q 017553 368 P 368 (369)
Q Consensus 368 ~ 368 (369)
+
T Consensus 405 ~ 405 (693)
T 3iuj_A 405 S 405 (693)
T ss_dssp T
T ss_pred C
Confidence 4
No 223
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.41 E-value=7e-11 Score=107.09 Aligned_cols=291 Identities=12% Similarity=0.082 Sum_probs=165.4
Q ss_pred cEEEEecCCc-EEEEEecCCceeEEEeeeccCCcc------cceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccc
Q 017553 50 NVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKE------ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHK 122 (369)
Q Consensus 50 ~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~------~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~ 122 (369)
..+..++.++ |.-+|..+|+.+-........... .....++. .+. .|++++.|+.|..+|..+|+.+.
T Consensus 78 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~----~~~-~v~v~~~dg~l~alD~~tG~~~W 152 (677)
T 1kb0_A 78 GIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL----WKG-KVYVGAWDGRLIALDAATGKEVW 152 (677)
T ss_dssp TEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE----ETT-EEEEECTTSEEEEEETTTCCEEE
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE----ECC-EEEEEcCCCEEEEEECCCCCEEe
Confidence 3444444444 999999999987776532111000 00011222 244 68888899999999999999888
Q ss_pred eeecc-c----cceEEEEecCCCCceEEEEeC------CCcEEEEEccCCcEEEEeeccCCCC-----------------
Q 017553 123 SFVGH-G----DSINEIRTQPLKPSLVVSASK------DESVRLWNVQTGICILIFAGAGGHR----------------- 174 (369)
Q Consensus 123 ~~~~~-~----~~v~~~~~~~~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~~~~~----------------- 174 (369)
++..+ . ..+.+--... ++ .++.++. ++.|+.+|..+|+.+..+.......
T Consensus 153 ~~~~~~~~~~~~~~~~~p~v~-~~-~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~ 230 (677)
T 1kb0_A 153 HQNTFEGQKGSLTITGAPRVF-KG-KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWD 230 (677)
T ss_dssp EEETTTTCCSSCBCCSCCEEE-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSC
T ss_pred eecCCcCcCcCcccccCcEEE-CC-EEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccc
Confidence 77654 1 1121111111 33 4444443 7999999999999998886421110
Q ss_pred ------------CcEEEEEecCCCceEEEEEeeCC-------------------cEEEEEccCceeeeeeeeeccCCCCC
Q 017553 175 ------------NEVLSVDFHPSDIYRIASCGMDN-------------------TVKIWSMKEFWTYVEKSFTWTDLPSK 223 (369)
Q Consensus 175 ------------~~v~~~~~~~~~~~~l~~~~~d~-------------------~v~i~d~~~~~~~~~~~~~~~~~~~~ 223 (369)
.....++++| ++.+++.+..++ .|..+|.++++..-.......+.
T Consensus 231 ~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~--- 306 (677)
T 1kb0_A 231 PSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDN--- 306 (677)
T ss_dssp GGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCC---
T ss_pred ccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcc---
Confidence 0112467888 566677666553 48888888865433222110000
Q ss_pred CCCceeecceeeeccCC-CceeeeeeeC---cEEEEeecCCeEEEecCCCCCCCCCCCcc------------ceee----
Q 017553 224 FPTKYVQFPVFIASVHS-NYVDCNRWLG---DFILSKSVDNEIVLWEPKMKEQSPGEGTA------------DILQ---- 283 (369)
Q Consensus 224 ~~~~~~~~~~~~~~~~~-~~v~~~~~~~---~~l~~~~~d~~i~i~d~~~~~~~~~~~~~------------~~~~---- 283 (369)
....... ..+.....+| ..++.++.+|.++++|..+++........ .++.
T Consensus 307 ----------wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~ 376 (677)
T 1kb0_A 307 ----------WDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAA 376 (677)
T ss_dssp ----------SCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGG
T ss_pred ----------cccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeecccc
Confidence 0000000 1111122235 67899999999999999998742110000 0000
Q ss_pred --------eccCCC--CCeeEEEEeecCCccEEEEecC------------------------------------------
Q 017553 284 --------KYPVPE--CDIWFIKFSCDFHYNAAAIGNR------------------------------------------ 311 (369)
Q Consensus 284 --------~~~~~~--~~i~~~~~s~~~~~~~l~~~~~------------------------------------------ 311 (369)
.++... ..-..++++|+.. ++++...
T Consensus 377 ~~~~~~~~~~P~~~G~~~w~~~a~dp~~~--~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~ 454 (677)
T 1kb0_A 377 RDGSKPQDAVPGPYGAHNWHPMSFNPQTG--LVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSK 454 (677)
T ss_dssp GCTTSCEECSSCTTCSSCSSCCEEETTTT--EEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSC
T ss_pred CcCCCccEECcCcccccCCCCceEcCCCC--EEEEeChhcceeeecccccccccccccccccccccccccccccccCCCC
Confidence 000000 0112568888876 4444321
Q ss_pred -CCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 312 -EGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 312 -dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
.|.|..||+.+++ .+...... .++....+..++.+++.++.||.+++||.++
T Consensus 455 ~~g~l~A~D~~tG~--~~W~~~~~---~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~t 507 (677)
T 1kb0_A 455 PFGRLLAWDPVAQK--AAWSVEHV---SPWNGGTLTTAGNVVFQGTADGRLVAYHAAT 507 (677)
T ss_dssp CEEEEEEEETTTTE--EEEEEEES---SSCCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred CccEEEEEeCCCCc--EEeecCCC---CCCcCcceEeCCCEEEEECCCCcEEEEECCC
Confidence 2789999999995 44444322 2344455667788899999999999999875
No 224
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.41 E-value=1.2e-09 Score=92.38 Aligned_cols=274 Identities=8% Similarity=0.018 Sum_probs=158.2
Q ss_pred ccEEEEecCC-cEEEEEecCCceeEEEeeeccCC----cccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccce
Q 017553 49 FNVFATVGGN-RVTVYQCLEGGVIAALQSYVDED----KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKS 123 (369)
Q Consensus 49 ~~~la~~~~~-~v~iw~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~ 123 (369)
+..+..++.+ .|..+|..+++.+.......... ....+...- . .++. .+++++.++.|..+|..+++.+..
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~--~~~~-~v~v~~~~g~l~a~d~~tG~~~W~ 128 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGV-T--VSGG-HVYIGSEKAQVYALNTSDGTVAWQ 128 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEE-E--EETT-EEEEEETTSEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCc-e--EeCC-EEEEEcCCCEEEEEECCCCCEEEE
Confidence 3455555555 49999998998776554311000 011222111 1 2333 688888899999999999988776
Q ss_pred eeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcE------EEEEecCCCceEEEEEeeCC
Q 017553 124 FVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEV------LSVDFHPSDIYRIASCGMDN 197 (369)
Q Consensus 124 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v------~~~~~~~~~~~~l~~~~~d~ 197 (369)
.............. +..++.++.++.|..+|..+|+.+..... ...+ ...... + ..++.+..++
T Consensus 129 ~~~~~~~~~~p~~~---~~~v~v~~~~g~l~~~d~~tG~~~W~~~~----~~~~~~~~~~~~~~~~--~-~~v~~g~~~g 198 (376)
T 3q7m_A 129 TKVAGEALSRPVVS---DGLVLIHTSNGQLQALNEADGAVKWTVNL----DMPSLSLRGESAPTTA--F-GAAVVGGDNG 198 (376)
T ss_dssp EECSSCCCSCCEEE---TTEEEEECTTSEEEEEETTTCCEEEEEEC----CC-----CCCCCCEEE--T-TEEEECCTTT
T ss_pred EeCCCceEcCCEEE---CCEEEEEcCCCeEEEEECCCCcEEEEEeC----CCCceeecCCCCcEEE--C-CEEEEEcCCC
Confidence 65433222222222 34777888899999999999999888762 2222 112222 3 3577788889
Q ss_pred cEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeeeCcEEEEeecCCeEEEecCCCCCCCCCCC
Q 017553 198 TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEG 277 (369)
Q Consensus 198 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 277 (369)
.+..+|..+++............. .....+. .........+..++.++.++.+..+|..+++.
T Consensus 199 ~l~~~d~~tG~~~w~~~~~~~~~~---------~~~~~~~---~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~----- 261 (376)
T 3q7m_A 199 RVSAVLMEQGQMIWQQRISQATGS---------TEIDRLS---DVDTTPVVVNGVVFALAYNGNLTALDLRSGQI----- 261 (376)
T ss_dssp EEEEEETTTCCEEEEEECCC-----------------------CCCCCCEEETTEEEEECTTSCEEEEETTTCCE-----
T ss_pred EEEEEECCCCcEEEEEecccCCCC---------ccccccc---ccCCCcEEECCEEEEEecCcEEEEEECCCCcE-----
Confidence 999999988654333221100000 0000000 00011122367788888899999999988762
Q ss_pred ccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeec
Q 017553 278 TADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCE 357 (369)
Q Consensus 278 ~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 357 (369)
+-.... .....+.. ++. .+..++.++.|..+|..+++. ........ ...+..... .+..|+.++.
T Consensus 262 ----~w~~~~--~~~~~~~~--~~~--~l~~~~~~g~l~~~d~~tG~~--~w~~~~~~-~~~~~~~~~--~~~~l~v~~~ 326 (376)
T 3q7m_A 262 ----MWKREL--GSVNDFIV--DGN--RIYLVDQNDRVMALTIDGGVT--LWTQSDLL-HRLLTSPVL--YNGNLVVGDS 326 (376)
T ss_dssp ----EEEECC--CCEEEEEE--ETT--EEEEEETTCCEEEEETTTCCE--EEEECTTT-TSCCCCCEE--ETTEEEEECT
T ss_pred ----EeeccC--CCCCCceE--ECC--EEEEEcCCCeEEEEECCCCcE--EEeecccC-CCcccCCEE--ECCEEEEEeC
Confidence 222221 12223333 333 677778899999999999853 33332111 112222222 2457888888
Q ss_pred CCeEEEEecCC
Q 017553 358 DGAIWRWDAIP 368 (369)
Q Consensus 358 dg~i~vw~~~~ 368 (369)
+|.|+++|..+
T Consensus 327 ~g~l~~~d~~t 337 (376)
T 3q7m_A 327 EGYLHWINVED 337 (376)
T ss_dssp TSEEEEEETTT
T ss_pred CCeEEEEECCC
Confidence 99999999764
No 225
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.40 E-value=1.2e-10 Score=105.68 Aligned_cols=295 Identities=14% Similarity=0.101 Sum_probs=164.8
Q ss_pred ccEEEEecCCc-EEEEEecCCceeEEEeeeccCCccc----ceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccce
Q 017553 49 FNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEE----SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKS 123 (369)
Q Consensus 49 ~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~ 123 (369)
+..+..++.++ |.-+|..+|+.+-............ .+..-... ..+. .+++++.|+.|..+|..+|+.+..
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~g-~v~v~~~dg~l~AlDa~TG~~~W~ 146 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVA--VWKG-KVYVGVLDGRLEAIDAKTGQRAWS 146 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCE--EETT-EEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccE--EECC-EEEEEccCCEEEEEECCCCCEeee
Confidence 34455555555 9999999999887765321100000 00000011 1233 688888999999999999998877
Q ss_pred eecc--ccceEEEEecC--CCCceEEEEe------CCCcEEEEEccCCcEEEEeeccCCCC-------------------
Q 017553 124 FVGH--GDSINEIRTQP--LKPSLVVSAS------KDESVRLWNVQTGICILIFAGAGGHR------------------- 174 (369)
Q Consensus 124 ~~~~--~~~v~~~~~~~--~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~~~------------------- 174 (369)
+... ......+..+| .++. ++.++ .+|.|+.||.++|+.+..+....+..
T Consensus 147 ~~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 225 (689)
T 1yiq_A 147 VDTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGD 225 (689)
T ss_dssp EECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSS
T ss_pred ecCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCc
Confidence 6542 11111111111 0333 44443 37899999999999998876311100
Q ss_pred ---------CcEEEEEecCCCceEEEEEeeCCc-------------------EEEEEccCceeeeeeeeeccCCCCCCCC
Q 017553 175 ---------NEVLSVDFHPSDIYRIASCGMDNT-------------------VKIWSMKEFWTYVEKSFTWTDLPSKFPT 226 (369)
Q Consensus 175 ---------~~v~~~~~~~~~~~~l~~~~~d~~-------------------v~i~d~~~~~~~~~~~~~~~~~~~~~~~ 226 (369)
.....++++| ...+++.+..++. |..+|.++++..-.......+
T Consensus 226 ~w~~~~~g~~~w~~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d------- 297 (689)
T 1yiq_A 226 AYVEQGGGGTAWDSFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGD------- 297 (689)
T ss_dssp THHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTC-------
T ss_pred eeeecCCCCccccceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcc-------
Confidence 0112577888 6667777777653 999999986543322211000
Q ss_pred ceeecceeeeccCCCc-eeeeeeeCc---EEEEeecCCeEEEecCCCCCCCCCCCcc-------------ceee----e-
Q 017553 227 KYVQFPVFIASVHSNY-VDCNRWLGD---FILSKSVDNEIVLWEPKMKEQSPGEGTA-------------DILQ----K- 284 (369)
Q Consensus 227 ~~~~~~~~~~~~~~~~-v~~~~~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~-------------~~~~----~- 284 (369)
.......... +..+.++|+ .++.++.+|.++++|..+++........ ..+. .
T Consensus 298 ------~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~ 371 (689)
T 1yiq_A 298 ------AWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAA 371 (689)
T ss_dssp ------CSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHC
T ss_pred ------cccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhcc
Confidence 0000000001 112223344 7889999999999999998742100000 0000 0
Q ss_pred -ccCC-----------CCCeeEEEEeecCCccEEEEec------------------------------------------
Q 017553 285 -YPVP-----------ECDIWFIKFSCDFHYNAAAIGN------------------------------------------ 310 (369)
Q Consensus 285 -~~~~-----------~~~i~~~~~s~~~~~~~l~~~~------------------------------------------ 310 (369)
+... ...-..++++|+.. ++++..
T Consensus 372 ~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~--~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~ 449 (689)
T 1yiq_A 372 YWKNGKRNLVTPAFWGAHDWQPMSYNPDTG--LVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEM 449 (689)
T ss_dssp TTTSSSCEEESSCTTCSSCSSCCEEETTTT--EEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHH
T ss_pred ccCCCCeeEeCCCcccccCCCcceECCCCC--EEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCC
Confidence 0000 00122367888765 444331
Q ss_pred ---CCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 311 ---REGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 311 ---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
.+|.|+.||+.+++ .+..+... .++..-.+...+.+++.++.||.++.||.++
T Consensus 450 ~~~~~g~l~A~D~~tG~--~~W~~~~~---~~~~~g~~~tagglvf~gt~dg~l~a~D~~t 505 (689)
T 1yiq_A 450 AKSWSGKLIAWDPVKQQ--AAWEVPYV---TIFNGGTLSTAGNLVFEGSADGRVIAYAADT 505 (689)
T ss_dssp HTTCEEEEEEEETTTTE--EEEEEEES---SSCCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred CCCcceeEEEEECCCCC--eEeEccCC---CCccCccceECCCEEEEECCCCcEEEEECCC
Confidence 14889999999995 44444422 2233335556778999999999999999875
No 226
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.39 E-value=4.6e-10 Score=94.87 Aligned_cols=275 Identities=12% Similarity=0.014 Sum_probs=162.6
Q ss_pred ccceeeeeecccCCcCeEEEEEeeccCCCccEEEEec-----------CCcEEEEEecCCceeEEEeeeccCC--cccce
Q 017553 20 KREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVG-----------GNRVTVYQCLEGGVIAALQSYVDED--KEESF 86 (369)
Q Consensus 20 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~-----------~~~v~iw~~~~~~~~~~~~~~~~~~--~~~~v 86 (369)
....+.+.++..-..+ .++++| +|+.|+++. .+.|.++|..+++.+..+..-.... ....-
T Consensus 106 ~~t~~vv~~I~vG~~P--gia~Sp----Dgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P 179 (426)
T 3c75_H 106 GSTGRILGMTDGGFLP--HPVAAE----DGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQ 179 (426)
T ss_dssp TTTTEEEEEEEECSSC--EEEECT----TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCG
T ss_pred CCCCEEEEEEECCCCC--ceEECC----CCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCc
Confidence 4555666666544455 899999 577777665 2339999999999888776310000 01112
Q ss_pred eEEEeeecCCCccEEEEeec--CCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEE
Q 017553 87 YTVSWACNVDGIPFLVAGGI--NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICI 164 (369)
Q Consensus 87 ~~~~~~~~~~g~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 164 (369)
..+.++ |||+ +|+++.. ++.|.+.|+.+++.+.++.-- +. ....|.....+++.+.||.+.+.+..+++..
T Consensus 180 ~~~~~s--pDGk-~lyV~n~~~~~~VsVID~~t~kvv~~I~v~-g~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~ 252 (426)
T 3c75_H 180 WMNALT--PDNK-NLLFYQFSPAPAVGVVDLEGKTFDRMLDVP-DC---YHIFPASPTVFYMNCRDGSLARVDFADGETK 252 (426)
T ss_dssp GGSEEC--TTSS-EEEEEECSSSCEEEEEETTTTEEEEEEECC-SE---EEEEEEETTEEEEEETTSSEEEEECCTTCCE
T ss_pred ceEEEc--CCCC-EEEEEecCCCCeEEEEECCCCeEEEEEEcC-Cc---eeeccCCCcEEEEEcCCCCEEEEECCCCcEE
Confidence 235555 9999 7777653 578999999999988887632 11 2334434467777788899888888666554
Q ss_pred EEee-ccCCCCCcE-EEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCc
Q 017553 165 LIFA-GAGGHRNEV-LSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY 242 (369)
Q Consensus 165 ~~~~-~~~~~~~~v-~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (369)
.... .......++ ..+.+.+ ++..++.....+.|.+.|+..........+...... ...... .+..
T Consensus 253 ~~~~~~~~v~~~p~~~~~~~~~-dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~--------~i~~g~---~p~g 320 (426)
T 3c75_H 253 VTNTEVFHTEDELLINHPAFSL-RSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEA--------ERADDW---RPGG 320 (426)
T ss_dssp EEECCCCSCTTSCBCSCCEECT-TTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTT--------TGGGTE---EECS
T ss_pred EEeeeeeccCCCceeeEeeecC-CCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccc--------cccccc---ccCC
Confidence 3210 000111121 2356788 555555556788999999976332211111100000 000000 1111
Q ss_pred eeeeeee--CcEEEEeec----------CCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEec
Q 017553 243 VDCNRWL--GDFILSKSV----------DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN 310 (369)
Q Consensus 243 v~~~~~~--~~~l~~~~~----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~ 310 (369)
...+.++ ++.+++... ++.|.++|..+.+ .+..+... .....++|+|+++..++++..
T Consensus 321 ~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k---------vv~~I~vg-~~P~gia~spDg~~~lyv~n~ 390 (426)
T 3c75_H 321 WQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE---------RINKIELG-HEIDSINVSQDAEPLLYALSA 390 (426)
T ss_dssp SSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC---------EEEEEEEE-EEECEEEECCSSSCEEEEEET
T ss_pred ceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCe---------EEEEEECC-CCcCeEEEccCCCEEEEEEcC
Confidence 1123444 555555432 3579999999887 55555543 247889999999633444444
Q ss_pred CCCeEEEEEccCCCceeEEEe
Q 017553 311 REGKIFVWELQSSPPVLIARL 331 (369)
Q Consensus 311 ~dg~i~i~d~~~~~~~~~~~~ 331 (369)
.++.|.++|..+.+ .+..+
T Consensus 391 ~s~~VsVID~~t~k--vv~tI 409 (426)
T 3c75_H 391 GTQTLHIYDAATGE--ELRSV 409 (426)
T ss_dssp TTTEEEEEETTTCC--EEEEE
T ss_pred CCCeEEEEECCCCC--EEEEe
Confidence 69999999999985 44554
No 227
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.38 E-value=9.4e-11 Score=97.19 Aligned_cols=263 Identities=9% Similarity=-0.024 Sum_probs=159.3
Q ss_pred cCeEEEEEeeccCCCccEEEEecCCcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEE
Q 017553 34 RPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVI 113 (369)
Q Consensus 34 ~~v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vw 113 (369)
..+.++...+ ++. +..+..+ |..+|. +++....... .........+. ++ .+..++.++.|..+
T Consensus 60 ~~~~~~~~~~----~g~-l~v~t~~-l~~~d~-~g~~~~~~~~-----~~~~~~~~~~~---~~--~l~v~t~~~~l~~~ 122 (330)
T 3hxj_A 60 IIECRPSIGK----DGT-IYFGSDK-VYAINP-DGTEKWRFDT-----KKAIVSDFTIF---ED--ILYVTSMDGHLYAI 122 (330)
T ss_dssp EEEECCEETT----TTE-ECCSSCE-EEEECC-CGGGGGGSCC----------CCEEEE---TT--EEEEECTTSEEEEE
T ss_pred CcccceEEec----CCc-EEEecCc-EEEECC-CCcEEEEEEC-----CCCcccCceEE---CC--EEEEEecCCEEEEE
Confidence 3345555554 344 4445555 888874 5554332221 11111122222 44 57888888999999
Q ss_pred EcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEE
Q 017553 114 DVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASC 193 (369)
Q Consensus 114 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 193 (369)
|.. ++...........+.++...+ ++. +..++.++.|..+|.. ++....+. .....+.++...+ ++.+++ +
T Consensus 123 d~~-g~~~~~~~~~~~~~~~~~~~~-~g~-l~vgt~~~~l~~~d~~-g~~~~~~~---~~~~~~~~~~~d~-~g~l~v-~ 193 (330)
T 3hxj_A 123 NTD-GTEKWRFKTKKAIYATPIVSE-DGT-IYVGSNDNYLYAINPD-GTEKWRFK---TNDAITSAASIGK-DGTIYF-G 193 (330)
T ss_dssp CTT-SCEEEEEECSSCCCSCCEECT-TSC-EEEECTTSEEEEECTT-SCEEEEEE---CSSCCCSCCEECT-TCCEEE-E
T ss_pred cCC-CCEEEEEcCCCceeeeeEEcC-CCE-EEEEcCCCEEEEECCC-CCEeEEEe---cCCCceeeeEEcC-CCEEEE-E
Confidence 987 776666655555566666765 444 6667888999999998 88777766 3445566777765 666444 4
Q ss_pred eeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeeeC-cEEEEeecCCeEEEecCCCCCC
Q 017553 194 GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLG-DFILSKSVDNEIVLWEPKMKEQ 272 (369)
Q Consensus 194 ~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~ 272 (369)
+ +.|..+| .++.. ..........+.++..++ ..+..++.++.+..+|... +
T Consensus 194 t--~~l~~~d-~~g~~-----------------------~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~~g-~- 245 (330)
T 3hxj_A 194 S--DKVYAIN-PDGTE-----------------------KWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINPDG-T- 245 (330)
T ss_dssp S--SSEEEEC-TTSCE-----------------------EEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECTTS-C-
T ss_pred e--CEEEEEC-CCCcE-----------------------EEEEccCCcceeceEECCCCeEEEEcCCCeEEEECCCC-C-
Confidence 4 7899999 54321 222222334566666663 3777788888898887533 2
Q ss_pred CCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEE
Q 017553 273 SPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTI 352 (369)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 352 (369)
.+..+......+..+.+.+++ .|..++.+|.|..+|. +++ ....+. .....+.++...++|.++
T Consensus 246 --------~~~~~~~~~~~~~~~~~~~~g---~l~v~t~~ggl~~~d~-~g~--~~~~~~--~~~~~~~~~~~d~~g~l~ 309 (330)
T 3hxj_A 246 --------EKWRFKTGKRIESSPVIGNTD---TIYFGSYDGHLYAINP-DGT--EKWNFE--TGSWIIATPVIDENGTIY 309 (330)
T ss_dssp --------EEEEEECSSCCCSCCEECTTS---CEEEECTTCEEEEECT-TSC--EEEEEE--CSSCCCSCCEECTTCCEE
T ss_pred --------EeEEeeCCCCccccceEcCCC---eEEEecCCCCEEEECC-CCc--EEEEEE--cCCccccceEEcCCCEEE
Confidence 233333333333445555555 5777888889999996 553 333333 223456777777888655
Q ss_pred EEeecCCeEEEEecC
Q 017553 353 LSCCEDGAIWRWDAI 367 (369)
Q Consensus 353 ~s~~~dg~i~vw~~~ 367 (369)
.++.+|.+++...+
T Consensus 310 -~gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 310 -FGTRNGKFYALFNL 323 (330)
T ss_dssp -EECTTSCEEEEEC-
T ss_pred -EEcCCCeEEEEecc
Confidence 57889999887654
No 228
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.36 E-value=2e-09 Score=97.76 Aligned_cols=158 Identities=12% Similarity=0.100 Sum_probs=99.5
Q ss_pred ccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEee------cCCeEEEEEcCCcccc
Q 017553 49 FNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG------INGIIRVIDVSNEKLH 121 (369)
Q Consensus 49 ~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~------~dg~i~vwd~~~~~~~ 121 (369)
+..++.++.++ |..+|..+|+.+-.............+..--.. .++. ++++. .+|.|+.||..+|+.+
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v--~~g~--v~vg~~~~~~~~~g~v~a~D~~tG~~~ 196 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRV--VNGK--VVIGNGGAEFGVRGYVTAYDAETGKEA 196 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEE--ETTE--EEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEE--ECCE--EEEEeCCCccCCCCEEEEEECCCCcEE
Confidence 35666666666 999999999988776642010111111111111 2454 44443 3789999999999987
Q ss_pred ceeecc-------------------------------ccceEEEEecCCCCceEEEEeCCCc------------------
Q 017553 122 KSFVGH-------------------------------GDSINEIRTQPLKPSLVVSASKDES------------------ 152 (369)
Q Consensus 122 ~~~~~~-------------------------------~~~v~~~~~~~~~~~~l~s~~~dg~------------------ 152 (369)
..+... ......+++.| +..+++.+..++.
T Consensus 197 W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~ 275 (689)
T 1yiq_A 197 WRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLS 275 (689)
T ss_dssp EEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCTTTT
T ss_pred EEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeee
Confidence 666421 01112577888 6778888877763
Q ss_pred -EEEEEccCCcEEEEeeccCCCC-------CcEEEEEecCCCce---EEEEEeeCCcEEEEEccCceeeeee
Q 017553 153 -VRLWNVQTGICILIFAGAGGHR-------NEVLSVDFHPSDIY---RIASCGMDNTVKIWSMKEFWTYVEK 213 (369)
Q Consensus 153 -i~vwd~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~---~l~~~~~d~~v~i~d~~~~~~~~~~ 213 (369)
|..+|..+|+.+..++.. .|. .++....... ++. .++.++.+|.++++|.++++.....
T Consensus 276 ~v~AlD~~TG~~~W~~~~~-~~d~wd~~~~~~~~l~d~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~ 345 (689)
T 1yiq_A 276 SIVAVNADTGEYVWHYQTT-PGDAWDYTATQHMILAELPI-DGKPRKVLMQAPKNGFFYVIDRATGELLSAK 345 (689)
T ss_dssp EEEEEETTTCCEEEEEESS-TTCCSCCCCCSCEEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred eEEEEEccCCceeEeeecC-CcccccccCCCCcEEEeecc-CCcEEEEEEEECCCCeEEEEECCCCCEeccc
Confidence 999999999999888731 121 1222222222 343 7888999999999999998765443
No 229
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.34 E-value=1.6e-09 Score=98.33 Aligned_cols=283 Identities=8% Similarity=0.037 Sum_probs=159.0
Q ss_pred ccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeec------CCeEEEEEcCCcccc
Q 017553 49 FNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI------NGIIRVIDVSNEKLH 121 (369)
Q Consensus 49 ~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~------dg~i~vwd~~~~~~~ 121 (369)
+..++.++.++ |..+|..+|+.+..............+...-.. .++ .+++++. +|.|+.+|..+++.+
T Consensus 128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~--~v~v~~~~~~~~~~g~v~a~D~~tG~~~ 203 (677)
T 1kb0_A 128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKG--KVIIGNGGAEYGVRGYITAYDAETGERK 203 (677)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETT--EEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECC--EEEEEecccccCCCCEEEEEECCCCcEE
Confidence 34566666565 999999999988776632010000111111111 234 4555543 799999999999987
Q ss_pred ceeecccc--------------------------------ceEEEEecCCCCceEEEEeCCC------------------
Q 017553 122 KSFVGHGD--------------------------------SINEIRTQPLKPSLVVSASKDE------------------ 151 (369)
Q Consensus 122 ~~~~~~~~--------------------------------~v~~~~~~~~~~~~l~s~~~dg------------------ 151 (369)
.++..... ....++++| +..+++.+..++
T Consensus 204 W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~ 282 (677)
T 1kb0_A 204 WRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPWSHKVRSPKGGDNLYL 282 (677)
T ss_dssp EEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTT
T ss_pred EEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccccCCCCCccCCCCeee
Confidence 76653211 113567888 667777776654
Q ss_pred -cEEEEEccCCcEEEEeeccCCCC-------CcEEEEEecCCCc---eEEEEEeeCCcEEEEEccCceeeeeeeeeccCC
Q 017553 152 -SVRLWNVQTGICILIFAGAGGHR-------NEVLSVDFHPSDI---YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDL 220 (369)
Q Consensus 152 -~i~vwd~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~---~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~ 220 (369)
.|..+|..+|+.+..++.. .|. ....-+.... ++ ..++.++.+|.++++|.++++......+.....
T Consensus 283 ~sv~AlD~~TG~~~W~~~~~-~~d~wd~~~~~~p~l~~~~~-dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~ 360 (677)
T 1kb0_A 283 ASIVALDPDTGKYKWHYQET-PGDNWDYTSTQPMILADIKI-AGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNW 360 (677)
T ss_dssp TEEEEECTTTCCEEEEEESS-TTCCSCCCCCSCCEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSS
T ss_pred EEEEEEECCCCCEEEEEecC-CCcccccccCCCcEEEeccc-CCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCc
Confidence 5999999999999887742 121 1122233333 44 678999999999999999987655443221100
Q ss_pred CCCC--CCcee--------ecceeeeccCCC--ceeeeeee--CcEEEEeec----------------------------
Q 017553 221 PSKF--PTKYV--------QFPVFIASVHSN--YVDCNRWL--GDFILSKSV---------------------------- 258 (369)
Q Consensus 221 ~~~~--~~~~~--------~~~~~~~~~~~~--~v~~~~~~--~~~l~~~~~---------------------------- 258 (369)
.... ..... ...........+ .-..++++ ..++++...
T Consensus 361 ~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 440 (677)
T 1kb0_A 361 ASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGW 440 (677)
T ss_dssp EEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTC
T ss_pred ccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccc
Confidence 0000 00000 000000000000 00134554 345554332
Q ss_pred ---------------CCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCC
Q 017553 259 ---------------DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 323 (369)
Q Consensus 259 ---------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~ 323 (369)
.+.|..||+.+++ .+-+++. ..+.....++..+. +++.++.||.+++||..++
T Consensus 441 ~~g~~~~~~~~~~~~~g~l~A~D~~tG~---------~~W~~~~-~~~~~~g~~~~~g~--~v~~g~~dg~l~a~D~~tG 508 (677)
T 1kb0_A 441 NTAKFFNAEPPKSKPFGRLLAWDPVAQK---------AAWSVEH-VSPWNGGTLTTAGN--VVFQGTADGRLVAYHAATG 508 (677)
T ss_dssp CCCEEECSSCCCSCCEEEEEEEETTTTE---------EEEEEEE-SSSCCCCEEEETTT--EEEEECTTSEEEEEETTTC
T ss_pred ccccccccccCCCCCccEEEEEeCCCCc---------EEeecCC-CCCCcCcceEeCCC--EEEEECCCCcEEEEECCCC
Confidence 2678899998876 2333322 22344455677665 7788899999999999999
Q ss_pred CceeEEEeecCCCccceEEEEecCCCCEEE
Q 017553 324 PPVLIARLSHAQSKSPIRQTAMSYDGSTIL 353 (369)
Q Consensus 324 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 353 (369)
+......+... ....-+.|.++|+.++
T Consensus 509 ~~lw~~~~~~~---~~~~p~~y~~~G~~~v 535 (677)
T 1kb0_A 509 EKLWEAPTGTG---VVAAPSTYMVDGRQYV 535 (677)
T ss_dssp CEEEEEECSSC---CCSCCEEEEETTEEEE
T ss_pred ceeeeeeCCCC---cccCCEEEEeCCEEEE
Confidence 64433333322 2223355677886443
No 230
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.34 E-value=2.4e-09 Score=87.65 Aligned_cols=232 Identities=12% Similarity=0.042 Sum_probs=140.1
Q ss_pred cccCCcCeEEEEEeeccCCCcc-EEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeec
Q 017553 29 LQEGKRPLYAVVFNFIDSRYFN-VFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI 106 (369)
Q Consensus 29 ~~~h~~~v~~~~~s~~~~~~~~-~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~ 106 (369)
+..........+|+| +++ ++.+...++ |..|+. +++ ...+.. ....+..+++. ++|+ ++++...
T Consensus 40 l~~~~~~~egp~~~~----~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~-----~~~~~~gl~~d--~dG~-l~v~~~~ 105 (305)
T 3dr2_A 40 LYDQATWSEGPAWWE----AQRTLVWSDLVGRRVLGWRE-DGT-VDVLLD-----ATAFTNGNAVD--AQQR-LVHCEHG 105 (305)
T ss_dssp EECCCSSEEEEEEEG----GGTEEEEEETTTTEEEEEET-TSC-EEEEEE-----SCSCEEEEEEC--TTSC-EEEEETT
T ss_pred EecCCcCccCCeEeC----CCCEEEEEECCCCEEEEEeC-CCC-EEEEeC-----CCCccceeeEC--CCCC-EEEEECC
Confidence 444556678899999 466 566666555 999986 444 333331 33456777777 8998 6666666
Q ss_pred CCeEEEEEcCCccccceeecc-----ccceEEEEecCCCCceEEE----EeC-------------CCcEEEEEccCCcEE
Q 017553 107 NGIIRVIDVSNEKLHKSFVGH-----GDSINEIRTQPLKPSLVVS----ASK-------------DESVRLWNVQTGICI 164 (369)
Q Consensus 107 dg~i~vwd~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~s----~~~-------------dg~i~vwd~~~~~~~ 164 (369)
++.|.+|+.. ++. ..+..+ ...+..+++.| ++.++++ |.. .+.|..+|..+++..
T Consensus 106 ~~~v~~~~~~-g~~-~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~ 182 (305)
T 3dr2_A 106 RRAITRSDAD-GQA-HLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQ 182 (305)
T ss_dssp TTEEEEECTT-SCE-EEEECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCE
T ss_pred CCEEEEECCC-CCE-EEEEeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEE
Confidence 6889999975 543 222211 13467899999 8888776 332 256777777666644
Q ss_pred EEeeccCCCCCcEEEEEecCCCceEEEEEeeC------CcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeecc
Q 017553 165 LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD------NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV 238 (369)
Q Consensus 165 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (369)
... .......++|+| +++.|+.+... +.|..|++.... .... .. ....
T Consensus 183 ~~~-----~~~~p~gl~~sp-dg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~------------------~~-~~~~ 236 (305)
T 3dr2_A 183 RMA-----DLDHPNGLAFSP-DEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDR------------------RH-FASV 236 (305)
T ss_dssp EEE-----EESSEEEEEECT-TSSEEEEEECCC---CCCEEEEEEEETTE-EEEE------------------EE-EECC
T ss_pred EEe-----cCCCCcceEEcC-CCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCC------------------eE-EEEC
Confidence 332 123467899999 77766665554 689999987632 1000 00 0111
Q ss_pred CCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEE
Q 017553 239 HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF 316 (369)
Q Consensus 239 ~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~ 316 (369)
.......+.++ |+ +.++.. +.|.+|+.... .+..+..+. .+..++|+++++ .|..++.++ +.
T Consensus 237 ~~~~pdgi~~d~~G~-lwv~~~-~gv~~~~~~g~----------~~~~~~~~~-~~~~~~f~~d~~--~L~it~~~~-l~ 300 (305)
T 3dr2_A 237 PDGLPDGFCVDRGGW-LWSSSG-TGVCVFDSDGQ----------LLGHIPTPG-TASNCTFDQAQQ--RLFITGGPC-LW 300 (305)
T ss_dssp SSSCCCSEEECTTSC-EEECCS-SEEEEECTTSC----------EEEEEECSS-CCCEEEECTTSC--EEEEEETTE-EE
T ss_pred CCCCCCeEEECCCCC-EEEecC-CcEEEECCCCC----------EEEEEECCC-ceeEEEEeCCCC--EEEEEcCCe-EE
Confidence 22334456665 55 444454 45999998432 344444444 578899998876 555555543 44
Q ss_pred EEE
Q 017553 317 VWE 319 (369)
Q Consensus 317 i~d 319 (369)
.++
T Consensus 301 ~~~ 303 (305)
T 3dr2_A 301 MLP 303 (305)
T ss_dssp EEE
T ss_pred EEE
Confidence 433
No 231
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.34 E-value=8.8e-13 Score=110.90 Aligned_cols=179 Identities=8% Similarity=0.001 Sum_probs=98.3
Q ss_pred ccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeecc
Q 017553 49 FNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGH 127 (369)
Q Consensus 49 ~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 127 (369)
+..+++++.++ |+.||..+|+.+..+.. ..+.+..+. .++. ++++++.||.|+.||..+++.+..+..+
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-------~~~~s~p~~--~~g~-~~v~~s~dg~l~a~d~~tG~~~w~~~~~ 78 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE-------DPVLQVPTH--VEEP-AFLPDPNDGSLYTLGSKNNEGLTKLPFT 78 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEEC-------CCSCCCC-------C-CEEECTTTCCEEEC-----CCSEECSCC
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEecC-------CCceecceE--cCCC-EEEEeCCCCEEEEEECCCCceeeeeecc
Confidence 56777777777 99999999998877663 233333333 5676 7777889999999999999877666543
Q ss_pred cc-ceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccC
Q 017553 128 GD-SINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206 (369)
Q Consensus 128 ~~-~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~ 206 (369)
.. .+.+.-... .+..+++++.|+.|+.||.++|+.+..+. .+. ...++| ++..+++++.|+.|+.||.++
T Consensus 79 ~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~---~~~----~~~~~p-~~~~v~~~~~dg~v~a~d~~t 149 (369)
T 2hz6_A 79 IPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLS---SAF----ADSLSP-STSLLYLGRTEYTITMYDTKT 149 (369)
T ss_dssp HHHHHTTCSCC------CCCCEEEEEEEEECCC------------------------------EEEEEEEEEEECCCSSS
T ss_pred CccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEec---CCC----cccccc-cCCEEEEEecCCEEEEEECCC
Confidence 22 111100111 34567788889999999999999988776 232 234567 677888899999999999998
Q ss_pred ceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee-----CcEEEEeecCCeEEEecCCCCC
Q 017553 207 FWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-----GDFILSKSVDNEIVLWEPKMKE 271 (369)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~l~~~~~d~~i~i~d~~~~~ 271 (369)
++........ . .....+. ...+++++.+|.++.||.++++
T Consensus 150 G~~~W~~~~~---------------------~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~ 194 (369)
T 2hz6_A 150 RELRWNATYF---------------------D----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGD 194 (369)
T ss_dssp SSCCCEEEEE---------------------E----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCC
T ss_pred CCEEEeEecc---------------------c----ccCccccCCccccceEEEECCCCEEEEEECCCCc
Confidence 6432221100 0 0111122 2567788999999999999876
No 232
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.32 E-value=1.6e-12 Score=109.35 Aligned_cols=205 Identities=9% Similarity=-0.011 Sum_probs=112.7
Q ss_pred CCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCC
Q 017553 96 DGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRN 175 (369)
Q Consensus 96 ~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 175 (369)
++. .+++++.||.|+.||..+|+.+.++.. +.+.+..+.. ++.++++++.||.|+.||.++|+.+..+. .+..
T Consensus 8 ~~~-~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~~~---~~~~ 80 (369)
T 2hz6_A 8 PET-LLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTKLP---FTIP 80 (369)
T ss_dssp CTT-EEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECS---CCHH
T ss_pred eCC-EEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEc-CCCEEEEeCCCCEEEEEECCCCceeeeee---ccCc
Confidence 345 799999999999999999999888875 5555555666 66788888899999999999998776664 1211
Q ss_pred -cEE-EEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeeeCcEE
Q 017553 176 -EVL-SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFI 253 (369)
Q Consensus 176 -~v~-~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l 253 (369)
.+. ...+. .+..+++++.|+.|+.||.++++..... ..+.. + ..+..++.+
T Consensus 81 ~~~~~sp~~~--~~~~v~~g~~dg~v~a~D~~tG~~~w~~-----------------------~~~~~-~-~~~p~~~~v 133 (369)
T 2hz6_A 81 ELVQASPCRS--SDGILYMGKKQDIWYVIDLLTGEKQQTL-----------------------SSAFA-D-SLSPSTSLL 133 (369)
T ss_dssp HHHTTCSCC-------CCCCEEEEEEEEECCC-----------------------------------------------E
T ss_pred cccccCceEe--cCCEEEEEeCCCEEEEEECCCCcEEEEe-----------------------cCCCc-c-cccccCCEE
Confidence 110 01111 3346778888999999999986432211 11110 0 011147788
Q ss_pred EEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCC-ccEEEEecCCCeEEEEEccCCCceeEEEee
Q 017553 254 LSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFH-YNAAAIGNREGKIFVWELQSSPPVLIARLS 332 (369)
Q Consensus 254 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 332 (369)
++++.|+.|+.||.++++..- .+.... ....++..+.. ...+++++.+|.|+.||..+++. +....
T Consensus 134 ~~~~~dg~v~a~d~~tG~~~W---------~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~--~W~~~ 200 (369)
T 2hz6_A 134 YLGRTEYTITMYDTKTRELRW---------NATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV--LWIQN 200 (369)
T ss_dssp EEEEEEEEEECCCSSSSSCCC---------EEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE--EEEEE
T ss_pred EEEecCCEEEEEECCCCCEEE---------eEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcE--EEEec
Confidence 889999999999999886421 111100 11122233210 01566788899999999999864 33333
Q ss_pred cCCCccceE-EEEecCCCC
Q 017553 333 HAQSKSPIR-QTAMSYDGS 350 (369)
Q Consensus 333 ~~~~~~~v~-~~~~s~~~~ 350 (369)
. ..++. ...++++|.
T Consensus 201 ~---~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 201 Y---ASPVVAFYVWQREGL 216 (369)
T ss_dssp C---SSCEEEEEECTTSSC
T ss_pred C---CCceEEEEEecCCce
Confidence 1 13443 345556664
No 233
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.30 E-value=3.2e-10 Score=94.44 Aligned_cols=227 Identities=8% Similarity=-0.037 Sum_probs=138.1
Q ss_pred ceeEEEeeecCCCccEEEEee--cCCeEEEEEcCCcccc------ceeeccccceEEEEecCCCCceEEEEeC-----CC
Q 017553 85 SFYTVSWACNVDGIPFLVAGG--INGIIRVIDVSNEKLH------KSFVGHGDSINEIRTQPLKPSLVVSASK-----DE 151 (369)
Q Consensus 85 ~v~~~~~~~~~~g~~~l~~~~--~dg~i~vwd~~~~~~~------~~~~~~~~~v~~~~~~~~~~~~l~s~~~-----dg 151 (369)
....++++ ++|+ ++++.. .++.++||.+.+++.. .....+-..+..+++++ ++.++++-.. ++
T Consensus 18 ~p~~va~~--~~g~-~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~-~g~L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 18 APGNITLT--PDGR-LFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDG-NGIVWMLDNGNQSKSVP 93 (343)
T ss_dssp CEEEEEEC--TTSC-EEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECS-SSEEEEEECHHHHTSCC
T ss_pred CcceEEEC--CCCC-EEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcC-CCcEEEEcCCCCcCCCC
Confidence 45557766 8998 777753 2343556665455432 11123456799999999 6766665433 57
Q ss_pred cEEEEEccCCcEEEEeecc---CCCCCcEEEEEecCCCceEEEEEe---eCCcEEEEEccCceeeeeeeeeccCCCCCCC
Q 017553 152 SVRLWNVQTGICILIFAGA---GGHRNEVLSVDFHPSDIYRIASCG---MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFP 225 (369)
Q Consensus 152 ~i~vwd~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~---~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~ 225 (369)
.|.+||+.+++.+..+... ..+...+..+++++.++..+++-. .++.|.+||+.++..
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~---------------- 157 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA---------------- 157 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE----------------
T ss_pred eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE----------------
Confidence 8999999999877766521 112345689999974566667665 688999999987421
Q ss_pred CceeecceeeeccCCCce---eeeeeeCcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCC
Q 017553 226 TKYVQFPVFIASVHSNYV---DCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFH 302 (369)
Q Consensus 226 ~~~~~~~~~~~~~~~~~v---~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 302 (369)
...+..|.... ..+..++..+.+...++.++.|. ..+..++|+|+++
T Consensus 158 -------~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~-----------------------~~~~gia~s~dg~ 207 (343)
T 2qe8_A 158 -------ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH-----------------------LGVNGIVLDAENE 207 (343)
T ss_dssp -------EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC-----------------------CCEEEEEECTTSC
T ss_pred -------EEEecCCCcccccccceeECCEEEEeccCCCceecee-----------------------cccceeEeccCCC
Confidence 11222221110 11222355555556666655443 1246799999996
Q ss_pred ccEEEEecCCC-eEEEEEccC---CCc---e---eEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEec
Q 017553 303 YNAAAIGNREG-KIFVWELQS---SPP---V---LIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 366 (369)
Q Consensus 303 ~~~l~~~~~dg-~i~i~d~~~---~~~---~---~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~ 366 (369)
.|+.+...+ .+..++... +.. . .+..+ ++......++++++|.++++...++.|.+||.
T Consensus 208 --~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~ 276 (343)
T 2qe8_A 208 --WLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERY---SEKPICDGISIDKDHNIYVGDLAHSAIGVITS 276 (343)
T ss_dssp --EEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEE---EECCSCSCEEECTTCCEEEEEGGGTEEEEEET
T ss_pred --EEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEec---ccCCCCceEEECCCCCEEEEccCCCeEEEEEC
Confidence 555554444 666665431 100 0 00111 12235667999999999999989999999997
No 234
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.28 E-value=8e-08 Score=76.88 Aligned_cols=252 Identities=6% Similarity=-0.056 Sum_probs=144.5
Q ss_pred cEEEEecCCcEEEEEecCCcee-----EEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCcccccee
Q 017553 50 NVFATVGGNRVTVYQCLEGGVI-----AALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSF 124 (369)
Q Consensus 50 ~~la~~~~~~v~iw~~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~ 124 (369)
.+|..+..+.|+.+++...... ..+.. .......++|. +++..++++-..++.|..+++........+
T Consensus 2 ~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~-----~~~~~~gi~~d--~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~ 74 (267)
T 1npe_A 2 THLLFAQTGKIERLPLERNTMKKTEAKAFLHI-----PAKVIIGLAFD--CVDKVVYWTDISEPSIGRASLHGGEPTTII 74 (267)
T ss_dssp EEEEEEEEEEEEEEEESSSCBCGGGCEEEEEE-----EEEEEEEEEEE--TTTTEEEEEETTTTEEEEEESSSCCCEEEE
T ss_pred cEEEEEcCCeEEEEEecCcccccccceeeecC-----CCCcEEEEEEe--cCCCEEEEEECCCCEEEEEecCCCCcEEEE
Confidence 3455555556888887654321 11111 12234567776 766535666667789999998755433223
Q ss_pred eccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEee--CCcEEEE
Q 017553 125 VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM--DNTVKIW 202 (369)
Q Consensus 125 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--d~~v~i~ 202 (369)
.........+++.|.++.++++-...+.|.++++.......... ........++++|.++.++++... .+.|..+
T Consensus 75 ~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~---~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~ 151 (267)
T 1npe_A 75 RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFD---TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETS 151 (267)
T ss_dssp CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC---SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEE
T ss_pred ECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEE---CCCCCccEEEEeeCCCEEEEEECCCCCcEEEEE
Confidence 22224678999998445556666667899999986543322222 122467899999844555555443 4678888
Q ss_pred EccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEE-EEeecCCeEEEecCCCCCCCCCCCcc
Q 017553 203 SMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFI-LSKSVDNEIVLWEPKMKEQSPGEGTA 279 (369)
Q Consensus 203 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~ 279 (369)
++..... .............++++ ++.| ++-...+.|..+|+.....
T Consensus 152 ~~dg~~~-----------------------~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~------- 201 (267)
T 1npe_A 152 HMDGTNR-----------------------RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR------- 201 (267)
T ss_dssp ETTSCCC-----------------------EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE-------
T ss_pred ecCCCCc-----------------------EEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCce-------
Confidence 8765110 00011122345677776 4455 4445567899999875431
Q ss_pred ceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCC
Q 017553 280 DILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGS 350 (369)
Q Consensus 280 ~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 350 (369)
...... ......++. ++. .++++....+.|..+|..++ +.+..+.. +.......+++.|++.
T Consensus 202 --~~~~~~-~~~P~gi~~--d~~-~lyva~~~~~~v~~~d~~~g--~~~~~i~~-g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 202 --RKVLEG-LQYPFAVTS--YGK-NLYYTDWKTNSVIAMDLAIS--KEMDTFHP-HKQTRLYGITIALSQC 263 (267)
T ss_dssp --EEEEEC-CCSEEEEEE--ETT-EEEEEETTTTEEEEEETTTT--EEEEEECC-SSCCCCCCEEEECSCC
T ss_pred --EEEecC-CCCceEEEE--eCC-EEEEEECCCCeEEEEeCCCC--CceEEEcc-ccccccceeeecCccC
Confidence 111111 122345554 443 35555566789999999887 44555542 2112466788888764
No 235
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.23 E-value=1.1e-08 Score=80.38 Aligned_cols=208 Identities=10% Similarity=-0.040 Sum_probs=133.9
Q ss_pred cccceeecccc--ceEEEEecCCCCceEEEEeC--CCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEe
Q 017553 119 KLHKSFVGHGD--SINEIRTQPLKPSLVVSASK--DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG 194 (369)
Q Consensus 119 ~~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 194 (369)
+.+.++. |.. ....+.|+| ++.++++.+. ++.|+++|+.+++.+..+.. +.......+++. ++.++++.-
T Consensus 10 ~vv~~~p-~~~~~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l--~~~~fgeGi~~~--g~~lyv~t~ 83 (266)
T 2iwa_A 10 EVLNEFP-HDPYAFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKM--DDSYFGEGLTLL--NEKLYQVVW 83 (266)
T ss_dssp EEEEEEE-CCTTCCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEEC--CTTCCEEEEEEE--TTEEEEEET
T ss_pred eEEEEEE-CCCCCCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEec--CCCcceEEEEEe--CCEEEEEEe
Confidence 3445554 443 357999998 5655555543 57999999999999988763 122223356665 456667767
Q ss_pred eCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeeeCcEEEEeecCCeEEEecCCCCCCCC
Q 017553 195 MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSP 274 (369)
Q Consensus 195 ~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 274 (369)
.++.+.++|..+.+.. ..+......-..++++++.++++..++.|.++|..+.+
T Consensus 84 ~~~~v~viD~~t~~v~-----------------------~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~--- 137 (266)
T 2iwa_A 84 LKNIGFIYDRRTLSNI-----------------------KNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFK--- 137 (266)
T ss_dssp TCSEEEEEETTTTEEE-----------------------EEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCC---
T ss_pred cCCEEEEEECCCCcEE-----------------------EEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCc---
Confidence 7899999999884332 22211112224466777777766678999999998876
Q ss_pred CCCccceeeeccCC-----CCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecC---------CCccce
Q 017553 275 GEGTADILQKYPVP-----ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHA---------QSKSPI 340 (369)
Q Consensus 275 ~~~~~~~~~~~~~~-----~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------~~~~~v 340 (369)
.+..+... -...+.+.|. ++. +.+....++.|.+.|..+++......+... ......
T Consensus 138 ------v~~~I~Vg~~~~p~~~~nele~~-dg~--lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~ 208 (266)
T 2iwa_A 138 ------LIKKHNVKYNGHRVIRLNELEYI-NGE--VWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVL 208 (266)
T ss_dssp ------EEEEEECEETTEECCCEEEEEEE-TTE--EEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCE
T ss_pred ------EEEEEEECCCCcccccceeEEEE-CCE--EEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCce
Confidence 33333321 1235677777 553 555555688999999999964433333200 011356
Q ss_pred EEEEecCCCC-EEEEeecCCeEEEEecC
Q 017553 341 RQTAMSYDGS-TILSCCEDGAIWRWDAI 367 (369)
Q Consensus 341 ~~~~~s~~~~-~l~s~~~dg~i~vw~~~ 367 (369)
+.++|+|+++ +++++...+.|++-++.
T Consensus 209 nGIa~~~~~~~lfVTgk~~~~v~~i~l~ 236 (266)
T 2iwa_A 209 NGIAWDQENKRIFVTGKLWPKLFEIKLH 236 (266)
T ss_dssp EEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred EEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence 8999999986 45556577888877764
No 236
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.21 E-value=1.5e-09 Score=90.19 Aligned_cols=279 Identities=8% Similarity=-0.081 Sum_probs=156.6
Q ss_pred ccceeeeeecccCCcCeEEEEEeeccCCCccEEEEec----------CCc-EEEEEecCCceeEEEeeeccCC--cccce
Q 017553 20 KREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVG----------GNR-VTVYQCLEGGVIAALQSYVDED--KEESF 86 (369)
Q Consensus 20 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~----------~~~-v~iw~~~~~~~~~~~~~~~~~~--~~~~v 86 (369)
...++.+.++..-..+ .++|+| +++.++++. .+. |.+||..+++.+..+....... ....-
T Consensus 53 ~~t~~v~~~i~vG~~P--~i~~sp----Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P 126 (368)
T 1mda_H 53 AGCGVTLGHSLGAFLS--LAVAGH----SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRV 126 (368)
T ss_dssp TTTTEEEEEEEECTTC--EEEECT----TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCT
T ss_pred CCCCeEEEEEeCCCCC--ceEECC----CCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCc
Confidence 4556667777644456 799999 577777775 234 9999999999998886420000 00122
Q ss_pred eEEEeeecCCCccEEEEeec--CCeEEE--EEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccC--
Q 017553 87 YTVSWACNVDGIPFLVAGGI--NGIIRV--IDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT-- 160 (369)
Q Consensus 87 ~~~~~~~~~~g~~~l~~~~~--dg~i~v--wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~-- 160 (369)
..++++ |||+ +++++.. +..|.+ +|+.+ +..+.. .+. +.+.|.....+++.+.||.+.+.|+.+
T Consensus 127 ~~ia~S--pDGk-~lyVan~~~~~~v~V~~iD~~t---v~~i~v-~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~ 196 (368)
T 1mda_H 127 HIIGNC--ASSA-CLLFFLFGSSAAAGLSVPGASD---DQLTKS-ASC---FHIHPGAAATHYLGSCPASLAASDLAAAP 196 (368)
T ss_dssp TSEEEC--TTSS-CEEEEECSSSCEEEEEETTTEE---EEEEEC-SSC---CCCEEEETTEEECCCCTTSCEEEECCSSC
T ss_pred ceEEEc--CCCC-EEEEEccCCCCeEEEEEEchhh---ceEEEC-CCc---eEEccCCCeEEEEEcCCCCEEEEECcccc
Confidence 336666 9999 6776653 467888 88876 344431 111 223453455667777889988889876
Q ss_pred ---CcEEEEe-eccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeee
Q 017553 161 ---GICILIF-AGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA 236 (369)
Q Consensus 161 ---~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (369)
++..... ....--..+. . .+.++. ++..+. +.+.+.|................ . .... .
T Consensus 197 ~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~-~~~vs~-~~V~viD~~~~~~~v~~~~~~~~-------~--~~~~--~ 259 (368)
T 1mda_H 197 AAAGIVGAQCTGAQNCSSQAA---Q-ANYPGM-LVWAVA-SSILQGDIPAAGATMKAAIDGNE-------S--GRKA--D 259 (368)
T ss_dssp CCCEECCCCSCTTSCBCSCCE---E-ETTTTE-EEECBS-SCCEEEECCSSCCEEECCCCSSC-------T--HHHH--T
T ss_pred ccCCeEEEEeeeeeeCCCCcc---c-cccCCE-EEEEcC-CEEEEEECCCCcceEEEEEEecc-------c--cccc--c
Confidence 3322100 0000112233 3 452444 444444 89999998652211111000000 0 0000 0
Q ss_pred ccCCCceeeeeee--CcEEEEeec---------CCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccE
Q 017553 237 SVHSNYVDCNRWL--GDFILSKSV---------DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNA 305 (369)
Q Consensus 237 ~~~~~~v~~~~~~--~~~l~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~ 305 (369)
...+.....+.++ ++.++++.. ++.+.++|+.+.+ .+..++... ....++|+|+++. +
T Consensus 260 ~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~---------vv~~i~vg~-~p~gi~~s~Dg~~-l 328 (368)
T 1mda_H 260 NFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ---------TSGPISNGH-DSDAIIAAQDGAS-D 328 (368)
T ss_dssp TEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC---------EEECCEEEE-EECEEEECCSSSC-E
T ss_pred ccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCe---------EEEEEECCC-CcceEEECCCCCE-E
Confidence 0011111113343 666665433 2356699999886 455555433 5788999999973 4
Q ss_pred EEEec-CCCeEEEEEccCCCceeEEEeecCCCccceEEEEecC
Q 017553 306 AAIGN-REGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSY 347 (369)
Q Consensus 306 l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 347 (369)
+++.. .++.|.++|+.+. +.+..+... .....+++.+
T Consensus 329 ~va~~~~~~~VsVID~~t~--kvv~~I~vg---~~P~~i~~~~ 366 (368)
T 1mda_H 329 NYANSAGTEVLDIYDAASD--QDQSSVELD---KGPESLSVQN 366 (368)
T ss_dssp EEEEETTTTEEEEEESSSC--EEEEECCCC---SCCCEEECCC
T ss_pred EEEccCCCCeEEEEECCCC--cEEEEEECC---CCCCEEEeec
Confidence 55555 6899999999998 456666522 3344555543
No 237
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.19 E-value=4.4e-07 Score=84.45 Aligned_cols=285 Identities=8% Similarity=0.045 Sum_probs=171.4
Q ss_pred eEEEEEeeccCCCccEEEEecCCcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEc
Q 017553 36 LYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDV 115 (369)
Q Consensus 36 v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~ 115 (369)
|.++...+ ++.+++....+++..|+..+++....... .....|.++... ++|. |..|+.++-|..||.
T Consensus 175 i~~i~~d~----~g~lwigt~~~Gl~~~~~~~~~~~~~~~~----~~~~~i~~i~~d--~~g~--lwigt~~~Gl~~~~~ 242 (795)
T 4a2l_A 175 IASTLYRQ----GDQIYIGTSTDGLYTYSITQKTFEKVIPI----LGTKQIQAILQQ--SPTR--IWVATEGAGLFLINP 242 (795)
T ss_dssp CEEEEEEE----TTEEEEEESSSCEEEEETTTCCEEECC--------CCCEEEEEEE--ETTE--EEEEEBSSCEEEEET
T ss_pred eEEEEECC----CCCEEEEECCCCEEEEeCCCCeEEEecCC----CCCCeeEEEEEc--CCCC--EEEEECCCCeEEEeC
Confidence 88888877 46777655455799999766554322111 124467666655 6775 555555545888997
Q ss_pred CCccccceeec-------cccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeecc----CCCCCcEEEEEecC
Q 017553 116 SNEKLHKSFVG-------HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGA----GGHRNEVLSVDFHP 184 (369)
Q Consensus 116 ~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~----~~~~~~v~~~~~~~ 184 (369)
.+++....... ....|.++...+ ++.+. .|+.+ -|.+||..+++........ .-....|.++...+
T Consensus 243 ~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lW-igt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~ 319 (795)
T 4a2l_A 243 KTKEIKNYLHSPSNPKSISSNYIRSLAMDS-QNRLW-IGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDS 319 (795)
T ss_dssp TTTEEEEECCCTTCTTSCSCSBEEEEEECT-TSCEE-EEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECT
T ss_pred CCCeEEEeecCCCCccccCCCeEEEEEEcC-CCCEE-EEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeC
Confidence 76543222111 135699998887 55544 44555 5889998876644332210 01235799999987
Q ss_pred CCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee-CcEEEEeecCCeEE
Q 017553 185 SDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIV 263 (369)
Q Consensus 185 ~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~ 263 (369)
++. |..|+.++-|..|+.....-..-.. .+. ........|.++..+ ...+..|+.++-|.
T Consensus 320 -~g~-lWigt~~~Gl~~~~~~~~~~~~~~~----------------~~~-~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~ 380 (795)
T 4a2l_A 320 -QGG-MWLGTYFGGLNYYHPIRNRFKNIRN----------------IPY-KNSLSDNVVSCIVEDKDKNLWIGTNDGGLN 380 (795)
T ss_dssp -TSC-EEEEESSSCEEEECGGGGSSEEECC----------------CTT-SSSCSCSSEEEEEECTTSCEEEEESSSCEE
T ss_pred -CcC-EEEEECCCCeEEeCCCcccceEEcC----------------CCC-CCCCCCCeeEEEEECCCCCEEEEECCCCeE
Confidence 665 5567777788888876521100000 000 001134567888777 44677788888899
Q ss_pred EecCCCCCCCCCCCccceeeec------cCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeec---C
Q 017553 264 LWEPKMKEQSPGEGTADILQKY------PVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSH---A 334 (369)
Q Consensus 264 i~d~~~~~~~~~~~~~~~~~~~------~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~ 334 (369)
.|+..+.... ..... ......|.++...+++. +|..|+.++-|..||..+++. ..+.. .
T Consensus 381 ~~~~~~~~~~-------~~~~~~~~~~~~l~~~~v~~i~~d~~g~--~lWigt~~~Gl~~~d~~~~~~---~~~~~~~~~ 448 (795)
T 4a2l_A 381 LYNPITQRFT-------SYTLQEDESARGIGSNNIKAVYVDEKKS--LVYIGTHAGGLSILHRNSGQV---ENFNQRNSQ 448 (795)
T ss_dssp EECTTTCCEE-------EECCC------CCSCSCEEEEEEETTTT--EEEEEETTTEEEEEETTTCCE---EEECTTTSC
T ss_pred EEcCCCCcEE-------EEecCCCCcccCCCCccEEEEEEcCCCC--EEEEEeCcCceeEEeCCCCcE---EEeecCCCC
Confidence 9998765310 01000 11235677887777763 477788878899999988742 22221 1
Q ss_pred CCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 335 QSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 335 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
.....|.++...++|.+.+... +| +.+||..+
T Consensus 449 l~~~~v~~i~~d~~g~lwigt~-~G-l~~~~~~~ 480 (795)
T 4a2l_A 449 LVNENVYAILPDGEGNLWLGTL-SA-LVRFNPEQ 480 (795)
T ss_dssp CSCSCEEEEEECSSSCEEEEES-SC-EEEEETTT
T ss_pred cCCCeeEEEEECCCCCEEEEec-Cc-eeEEeCCC
Confidence 2235789999999888766544 44 77887643
No 238
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.18 E-value=6.4e-09 Score=94.26 Aligned_cols=292 Identities=13% Similarity=0.099 Sum_probs=158.8
Q ss_pred cEEEEecCCc-EEEEEecCCceeEEEeeeccCCcc-----cce-eEEEeeecCCCccEEEEeecCCeEEEEEcCCccccc
Q 017553 50 NVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKE-----ESF-YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHK 122 (369)
Q Consensus 50 ~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~-----~~v-~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~ 122 (369)
..+..++.++ |.-+|..+|+.+-........... ..+ ..++. .+. .++.++.|+.|..+|..+|+.+.
T Consensus 67 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~v~v~~~dg~l~alD~~tG~~~W 141 (668)
T 1kv9_A 67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL----WGD-KVYVGTLDGRLIALDAKTGKAIW 141 (668)
T ss_dssp TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE----EBT-EEEEECTTSEEEEEETTTCCEEE
T ss_pred CEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE----ECC-EEEEEcCCCEEEEEECCCCCEee
Confidence 3444444444 999999999987776532110000 000 11111 233 68888899999999999999887
Q ss_pred eeecccc-ceEEEEecC--CCCceEEEEeC------CCcEEEEEccCCcEEEEeeccCCCC-------------------
Q 017553 123 SFVGHGD-SINEIRTQP--LKPSLVVSASK------DESVRLWNVQTGICILIFAGAGGHR------------------- 174 (369)
Q Consensus 123 ~~~~~~~-~v~~~~~~~--~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~~~~~------------------- 174 (369)
++..... ....+...| .++ .++.+.. +|.|..+|.++|+.+..+....+..
T Consensus 142 ~~~~~~~~~~~~~~~~P~v~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 220 (668)
T 1kv9_A 142 SQQTTDPAKPYSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGD 220 (668)
T ss_dssp EEECSCTTSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSS
T ss_pred eeccCCCCCcceecCCCEEECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcc
Confidence 7654211 000111111 033 4444432 5899999999999998886321110
Q ss_pred ---------CcEEEEEecCCCceEEEEEeeCC-------------------cEEEEEccCceeeeeeeeeccCCCCCCCC
Q 017553 175 ---------NEVLSVDFHPSDIYRIASCGMDN-------------------TVKIWSMKEFWTYVEKSFTWTDLPSKFPT 226 (369)
Q Consensus 175 ---------~~v~~~~~~~~~~~~l~~~~~d~-------------------~v~i~d~~~~~~~~~~~~~~~~~~~~~~~ 226 (369)
.....+++.| ...+++.+..++ .|..+|.++++..-.......+.
T Consensus 221 ~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~------ 293 (668)
T 1kv9_A 221 QYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDS------ 293 (668)
T ss_dssp CHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCC------
T ss_pred ceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCcc------
Confidence 0112467777 556677776655 38888988865433222110000
Q ss_pred ceeecceeeecc-CCCceeeeeeeCc---EEEEeecCCeEEEecCCCCCCCCCCC-------------ccceee------
Q 017553 227 KYVQFPVFIASV-HSNYVDCNRWLGD---FILSKSVDNEIVLWEPKMKEQSPGEG-------------TADILQ------ 283 (369)
Q Consensus 227 ~~~~~~~~~~~~-~~~~v~~~~~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~-------------~~~~~~------ 283 (369)
..... .+.....+.++++ .++.++.+|.++++|..+++...... ...++.
T Consensus 294 -------wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~ 366 (668)
T 1kv9_A 294 -------WDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRY 366 (668)
T ss_dssp -------SCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTC
T ss_pred -------ccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccc
Confidence 00000 0001112333454 68889999999999999887420000 000000
Q ss_pred ------eccCCC--CCeeEEEEeecCCccEEEE------------------------------------ecCCCeEEEEE
Q 017553 284 ------KYPVPE--CDIWFIKFSCDFHYNAAAI------------------------------------GNREGKIFVWE 319 (369)
Q Consensus 284 ------~~~~~~--~~i~~~~~s~~~~~~~l~~------------------------------------~~~dg~i~i~d 319 (369)
..+... ..-..++++|+.. ++.+ ...+|.|..||
T Consensus 367 ~~~~~~~~p~~~G~~~w~~~a~dp~~g--~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D 444 (668)
T 1kv9_A 367 EKEPIVMWPSPFGAHNWHSMSFNPGTG--LVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWD 444 (668)
T ss_dssp SSSCEEESSCTTCSSCSSCCEEETTTT--EEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEE
T ss_pred cCCeeEECCCCccccCCCcceECCCCC--EEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEe
Confidence 000000 0012256777654 2222 12348899999
Q ss_pred ccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 320 LQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
+.+++. +.+.... .+.....+...+.++++++.||.++.||.++
T Consensus 445 ~~tG~~--~W~~~~~---~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~t 488 (668)
T 1kv9_A 445 PVKQKA--AWKVPYP---THWNGGTLSTAGNLVFQGTAAGQMHAYSADK 488 (668)
T ss_dssp TTTTEE--EEEEEES---SSCCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred CCCCcE--EEEccCC---CCCcCceeEeCCCEEEEECCcccchhhhhhc
Confidence 999953 3333321 2233333444677889999999999999764
No 239
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.17 E-value=4.8e-07 Score=72.35 Aligned_cols=226 Identities=6% Similarity=-0.109 Sum_probs=133.0
Q ss_pred EEEEeecCCeEEEEEcCCcccc-----ceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCC
Q 017553 100 FLVAGGINGIIRVIDVSNEKLH-----KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR 174 (369)
Q Consensus 100 ~l~~~~~dg~i~vwd~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 174 (369)
+|+.+.. +.|+.+++...... ..+......+..++|++.++.++++-..++.|..+++..+.....+. ...
T Consensus 3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~---~~~ 78 (267)
T 1npe_A 3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR---QDL 78 (267)
T ss_dssp EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC---TTC
T ss_pred EEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEE---CCC
Confidence 4555543 47899998654321 11222234678999999445566666667899999997665433332 223
Q ss_pred CcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcE
Q 017553 175 NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDF 252 (369)
Q Consensus 175 ~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~ 252 (369)
.....++++|.++.++++-...+.|.++++..... .............++++ +..
T Consensus 79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-----------------------~~~~~~~~~~P~~i~vd~~~g~ 135 (267)
T 1npe_A 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-----------------------RVLFDTGLVNPRGIVTDPVRGN 135 (267)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-----------------------EEEECSSCSSEEEEEEETTTTE
T ss_pred CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE-----------------------EEEEECCCCCccEEEEeeCCCE
Confidence 46789999984566666666678899999875210 00011111344667776 455
Q ss_pred EEEeec---CCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEE
Q 017553 253 ILSKSV---DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA 329 (369)
Q Consensus 253 l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 329 (369)
++.+.. .+.|..+++..... ..+.. ........++++++++ .+.++-...+.|.++|..... ...
T Consensus 136 lyv~~~~~~~~~I~~~~~dg~~~-------~~~~~--~~~~~P~gia~d~~~~-~lyv~d~~~~~I~~~~~~g~~--~~~ 203 (267)
T 1npe_A 136 LYWTDWNRDNPKIETSHMDGTNR-------RILAQ--DNLGLPNGLTFDAFSS-QLCWVDAGTHRAECLNPAQPG--RRK 203 (267)
T ss_dssp EEEEECCSSSCEEEEEETTSCCC-------EEEEC--TTCSCEEEEEEETTTT-EEEEEETTTTEEEEEETTEEE--EEE
T ss_pred EEEEECCCCCcEEEEEecCCCCc-------EEEEE--CCCCCCcEEEEcCCCC-EEEEEECCCCEEEEEecCCCc--eEE
Confidence 554443 36788887754321 01111 1223567899999876 355566677899999997642 222
Q ss_pred EeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 330 RLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 330 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
.+. .. .....++.. ++.++++...++.|.++|..+
T Consensus 204 ~~~--~~-~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~ 238 (267)
T 1npe_A 204 VLE--GL-QYPFAVTSY-GKNLYYTDWKTNSVIAMDLAI 238 (267)
T ss_dssp EEE--CC-CSEEEEEEE-TTEEEEEETTTTEEEEEETTT
T ss_pred Eec--CC-CCceEEEEe-CCEEEEEECCCCeEEEEeCCC
Confidence 222 11 234566664 344444444567898888753
No 240
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.17 E-value=5.9e-09 Score=86.29 Aligned_cols=217 Identities=13% Similarity=0.027 Sum_probs=136.0
Q ss_pred ccEEEEecCCcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccc
Q 017553 49 FNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHG 128 (369)
Q Consensus 49 ~~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 128 (369)
+.+++....+++..+|.. ++....... ....+.++... ++|. +..++.++.|..+|.. ++....+....
T Consensus 108 ~~l~v~t~~~~l~~~d~~-g~~~~~~~~-----~~~~~~~~~~~--~~g~--l~vgt~~~~l~~~d~~-g~~~~~~~~~~ 176 (330)
T 3hxj_A 108 DILYVTSMDGHLYAINTD-GTEKWRFKT-----KKAIYATPIVS--EDGT--IYVGSNDNYLYAINPD-GTEKWRFKTND 176 (330)
T ss_dssp TEEEEECTTSEEEEECTT-SCEEEEEEC-----SSCCCSCCEEC--TTSC--EEEECTTSEEEEECTT-SCEEEEEECSS
T ss_pred CEEEEEecCCEEEEEcCC-CCEEEEEcC-----CCceeeeeEEc--CCCE--EEEEcCCCEEEEECCC-CCEeEEEecCC
Confidence 444444334459999976 665544432 22233444443 5675 6777888999999987 77766666555
Q ss_pred cceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCce
Q 017553 129 DSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 208 (369)
Q Consensus 129 ~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~ 208 (369)
..+.++...+ ++.+++ ++ +.|..+| .+++...... .....+.++...+ ++. +..++.++.|..+|... .
T Consensus 177 ~~~~~~~~d~-~g~l~v-~t--~~l~~~d-~~g~~~~~~~---~~~~~~~~~~~~~-~g~-l~v~t~~~gl~~~~~~g-~ 245 (330)
T 3hxj_A 177 AITSAASIGK-DGTIYF-GS--DKVYAIN-PDGTEKWNFY---AGYWTVTRPAISE-DGT-IYVTSLDGHLYAINPDG-T 245 (330)
T ss_dssp CCCSCCEECT-TCCEEE-ES--SSEEEEC-TTSCEEEEEC---CSSCCCSCCEECT-TSC-EEEEETTTEEEEECTTS-C
T ss_pred CceeeeEEcC-CCEEEE-Ee--CEEEEEC-CCCcEEEEEc---cCCcceeceEECC-CCe-EEEEcCCCeEEEECCCC-C
Confidence 6677777766 555444 44 8899999 7777777665 3445677888876 555 55566678888887533 1
Q ss_pred eeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee-CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccC
Q 017553 209 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV 287 (369)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 287 (369)
. +.........+..+..+ +..+..++.++.|..+|. +++ .+..+..
T Consensus 246 ~-----------------------~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g~---------~~~~~~~ 292 (330)
T 3hxj_A 246 E-----------------------KWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP-DGT---------EKWNFET 292 (330)
T ss_dssp E-----------------------EEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECT-TSC---------EEEEEEC
T ss_pred E-----------------------eEEeeCCCCccccceEcCCCeEEEecCCCCEEEECC-CCc---------EEEEEEc
Confidence 1 11111122222334444 567888888989999996 443 3333444
Q ss_pred CCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCC
Q 017553 288 PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 323 (369)
Q Consensus 288 ~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~ 323 (369)
....+.++...+++ .|..++.+|.+++......
T Consensus 293 ~~~~~~~~~~d~~g---~l~~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 293 GSWIIATPVIDENG---TIYFGTRNGKFYALFNLEH 325 (330)
T ss_dssp SSCCCSCCEECTTC---CEEEECTTSCEEEEEC---
T ss_pred CCccccceEEcCCC---EEEEEcCCCeEEEEecccc
Confidence 44556677776777 4777899999998876654
No 241
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.15 E-value=3.7e-08 Score=76.44 Aligned_cols=193 Identities=9% Similarity=0.036 Sum_probs=126.0
Q ss_pred ccceeeccccc--eEEEEecCCCCceEEEEeCCC--cEEEEEccCCcEEEEeeccCCCCCcE--EEEEecCCCceEEEEE
Q 017553 120 LHKSFVGHGDS--INEIRTQPLKPSLVVSASKDE--SVRLWNVQTGICILIFAGAGGHRNEV--LSVDFHPSDIYRIASC 193 (369)
Q Consensus 120 ~~~~~~~~~~~--v~~~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~l~~~ 193 (369)
.+.++. |... ...+.|+ ++.++.+.+.+| .|+++|+.+++.+..+.. .... -.+++. ++.+++..
T Consensus 33 vv~~~p-hd~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l----~~~~FgeGit~~--g~~ly~lt 103 (262)
T 3nol_A 33 IVHSYP-HDTKAFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIEL----GKRYFGEGISDW--KDKIVGLT 103 (262)
T ss_dssp EEEEEE-CCTTCEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEEC----CTTCCEEEEEEE--TTEEEEEE
T ss_pred EEEEec-CCCCcccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEec----CCccceeEEEEe--CCEEEEEE
Confidence 345553 5433 4788887 457777888776 999999999999988863 2233 335554 55666666
Q ss_pred eeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeeeCcEEEEeecCCeEEEecCCCCCCC
Q 017553 194 GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQS 273 (369)
Q Consensus 194 ~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 273 (369)
-.++.+.+||..+.+. +..+... ..-..++++++.|+.+..++.|.++|..+.+
T Consensus 104 w~~~~v~v~D~~t~~~-----------------------~~ti~~~-~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~-- 157 (262)
T 3nol_A 104 WKNGLGFVWNIRNLRQ-----------------------VRSFNYD-GEGWGLTHNDQYLIMSDGTPVLRFLDPESLT-- 157 (262)
T ss_dssp SSSSEEEEEETTTCCE-----------------------EEEEECS-SCCCCEEECSSCEEECCSSSEEEEECTTTCS--
T ss_pred eeCCEEEEEECccCcE-----------------------EEEEECC-CCceEEecCCCEEEEECCCCeEEEEcCCCCe--
Confidence 6789999999998433 2222221 2235666777777776668889999999876
Q ss_pred CCCCccceeeeccCCC-----CCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEee-cC-------CCccce
Q 017553 274 PGEGTADILQKYPVPE-----CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLS-HA-------QSKSPI 340 (369)
Q Consensus 274 ~~~~~~~~~~~~~~~~-----~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~-------~~~~~v 340 (369)
.+..+.... ..++.+.+. +++ +.+..-.++.|.+.|..+++......+. .. ......
T Consensus 158 -------v~~~I~V~~~g~~~~~lNELe~~-~G~--lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vl 227 (262)
T 3nol_A 158 -------PVRTITVTAHGEELPELNELEWV-DGE--IFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVL 227 (262)
T ss_dssp -------EEEEEECEETTEECCCEEEEEEE-TTE--EEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCE
T ss_pred -------EEEEEEeccCCccccccceeEEE-CCE--EEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCce
Confidence 344433311 234456776 553 5555557889999999999644444432 00 112356
Q ss_pred EEEEecCCCCEEEEeec
Q 017553 341 RQTAMSYDGSTILSCCE 357 (369)
Q Consensus 341 ~~~~~s~~~~~l~s~~~ 357 (369)
+.++|+|+++.|.+++.
T Consensus 228 NGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 228 NGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEEEEETTTTEEEEEET
T ss_pred EEEEEcCCCCEEEEECC
Confidence 89999999887777663
No 242
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.13 E-value=1.4e-08 Score=88.08 Aligned_cols=259 Identities=11% Similarity=0.098 Sum_probs=165.2
Q ss_pred EEEecCCc-EEEEEecCCceeEEEeeeccCCc----------------------------------ccceeEEEeee---
Q 017553 52 FATVGGNR-VTVYQCLEGGVIAALQSYVDEDK----------------------------------EESFYTVSWAC--- 93 (369)
Q Consensus 52 la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~----------------------------------~~~v~~~~~~~--- 93 (369)
|.||+..+ ++|+-+..++.+..+..+..... .+.......++
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 44555555 99999999888888776542210 11222344443
Q ss_pred cCCCccEEEEeecCCeEEEEEcCCccccceeec-cccceEEEEe-c-CCCCceEEEEe------------------CCCc
Q 017553 94 NVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG-HGDSINEIRT-Q-PLKPSLVVSAS------------------KDES 152 (369)
Q Consensus 94 ~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~-~-~~~~~~l~s~~------------------~dg~ 152 (369)
.+||+.++++...++.|.+.|+.+.++.+.+.- ....+..+++ . | ++.++++++ .++.
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~ 176 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNV 176 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCce
Confidence 247884455555677899999999987774432 2245778887 4 7 777777774 3468
Q ss_pred EEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCC---------------cEEEEEccCceeeeeeeeec
Q 017553 153 VRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN---------------TVKIWSMKEFWTYVEKSFTW 217 (369)
Q Consensus 153 i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~---------------~v~i~d~~~~~~~~~~~~~~ 217 (369)
+.+.|..+.+....+.. .+....++++| ++.++++.+.+. .|.+.|......
T Consensus 177 vtvID~~t~~v~~qI~V----gg~pd~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~-------- 243 (595)
T 1fwx_A 177 FTAVDADKWEVAWQVLV----SGNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK-------- 243 (595)
T ss_dssp EEEEETTTTEEEEEEEE----SSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH--------
T ss_pred EEEEECCCCeEEEEEEe----CCCccceEECC-CCCEEEEEecCcccCcchhhccccccceEEEeeccceeE--------
Confidence 99999999988888873 22456688999 677777776553 244444433100
Q ss_pred cCCCCCCCCceeecceeeeccCCCceeeeeeeCcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEE
Q 017553 218 TDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKF 297 (369)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 297 (369)
.. -.|++... +.|.+.|.++.+.. . .+..++.. ....++.+
T Consensus 244 -----------------~v-----------~~Gk~~~i----~~V~VID~~~~~~~----~--~~~~Ipvg-~~PhGv~~ 284 (595)
T 1fwx_A 244 -----------------AI-----------AAGDYQEL----NGVKVVDGRKEASS----L--FTRYIPIA-NNPHGCNM 284 (595)
T ss_dssp -----------------HH-----------HHTCSEEE----TTEEEEECSGGGCC----S--SEEEEEEE-SSCCCEEE
T ss_pred -----------------ec-----------cCCCeeEE----CcEEEEeCcccCCc----e--eEEEEecC-CCceEEEE
Confidence 00 01333322 45999999873210 0 12333322 34578999
Q ss_pred eecCCccEEEEecCCCeEEEEEccCCCc----------eeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecC
Q 017553 298 SCDFHYNAAAIGNREGKIFVWELQSSPP----------VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 298 s~~~~~~~l~~~~~dg~i~i~d~~~~~~----------~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 367 (369)
+|||+ .+++++..+.+|.++|+.+.+. ........ ......++|+|+|...++.-.|+.|.+||++
T Consensus 285 sPDGk-~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v---G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~ 360 (595)
T 1fwx_A 285 APDKK-HLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL---GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIE 360 (595)
T ss_dssp CTTSS-EEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC---CSCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred cCCCC-EEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC---CCCcceEEECCCCeEEEEEecCCcEEEEEhh
Confidence 99998 3666777889999999996421 12333332 2467889999999555666789999999975
No 243
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.13 E-value=2.5e-07 Score=77.54 Aligned_cols=247 Identities=10% Similarity=0.016 Sum_probs=134.6
Q ss_pred CccEEEEecC-Cc-EEEEEecCC----ceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecC------CeEEEEEc
Q 017553 48 YFNVFATVGG-NR-VTVYQCLEG----GVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN------GIIRVIDV 115 (369)
Q Consensus 48 ~~~~la~~~~-~~-v~iw~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~d------g~i~vwd~ 115 (369)
++++|...+. +. |.|+|..+. +..+.+..-.-....+.-.--.+.+.|+| +++++..+ |.|.++|.
T Consensus 94 ~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 94 ERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEECT
T ss_pred cCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEEC
Confidence 4566666554 44 999998755 33444420000000000011222334888 55555544 78999999
Q ss_pred CCccccceeecccc---ceEEEEecCCCCceEEEEe-------------------CCCcEEEEEccCCcEEEEeeccCCC
Q 017553 116 SNEKLHKSFVGHGD---SINEIRTQPLKPSLVVSAS-------------------KDESVRLWNVQTGICILIFAGAGGH 173 (369)
Q Consensus 116 ~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~s~~-------------------~dg~i~vwd~~~~~~~~~~~~~~~~ 173 (369)
++.+.+.++..... --..+.|+| +.+.+++.. .+.+|.+||+.+++.+..+.... .
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~-~ 249 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGE-E 249 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCT-T
T ss_pred CCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCC-C
Confidence 99998888863222 234578899 778888774 36899999999988888876310 1
Q ss_pred CCcEEEEEe--cCCCceEEEEEe------eCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceee
Q 017553 174 RNEVLSVDF--HPSDIYRIASCG------MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDC 245 (369)
Q Consensus 174 ~~~v~~~~~--~~~~~~~l~~~~------~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 245 (369)
......+.| +| +++++++++ .+++|.+|....+.......+.....+... ........+..-......
T Consensus 250 g~~P~~i~f~~~P-dg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~---~lp~~~~~f~~~~~~pa~ 325 (462)
T 2ece_A 250 NRMALELRPLHDP-TKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEG---NLPEILKPFKAVPPLVTD 325 (462)
T ss_dssp EEEEEEEEECSST-TCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCS---SCCGGGGGGTEECCCCCC
T ss_pred CCccceeEeeECC-CCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccc---cccccccccccCCCceeE
Confidence 134455655 99 666665555 566888877765332222221111100000 000000000000123455
Q ss_pred eeee--CcEEEEeec-CCeEEEecCCCCCCCCCCCccceeeeccCC--------------CCCeeEEEEeecCCccEEEE
Q 017553 246 NRWL--GDFILSKSV-DNEIVLWEPKMKEQSPGEGTADILQKYPVP--------------ECDIWFIKFSCDFHYNAAAI 308 (369)
Q Consensus 246 ~~~~--~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~--------------~~~i~~~~~s~~~~~~~l~~ 308 (369)
+.++ +++|.++.. .+.|.+||+..... .+.+...... ...-..++++|+++ +|++
T Consensus 326 I~lS~DGrfLYVSnrg~d~VavfdV~d~~~------~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk--~LyV 397 (462)
T 2ece_A 326 IDISLDDKFLYLSLWGIGEVRQYDISNPFK------PVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGR--RVYV 397 (462)
T ss_dssp EEECTTSCEEEEEETTTTEEEEEECSSTTS------CEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSS--EEEE
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEecCCCC------cEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCC--EEEE
Confidence 5555 777766555 78899999864321 1123222221 01357799999998 5555
Q ss_pred ec
Q 017553 309 GN 310 (369)
Q Consensus 309 ~~ 310 (369)
+.
T Consensus 398 aN 399 (462)
T 2ece_A 398 TN 399 (462)
T ss_dssp EC
T ss_pred Ec
Confidence 54
No 244
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.10 E-value=3.5e-08 Score=77.57 Aligned_cols=198 Identities=10% Similarity=0.006 Sum_probs=125.4
Q ss_pred eEEEeeecCCCccEEEEeec--CCeEEEEEcCCccccceeeccc-cceEEEEecCCCCceEEEEeCCCcEEEEEccCCcE
Q 017553 87 YTVSWACNVDGIPFLVAGGI--NGIIRVIDVSNEKLHKSFVGHG-DSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC 163 (369)
Q Consensus 87 ~~~~~~~~~~g~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 163 (369)
..+.++ +++. ++++.+. ++.|+++|+.+++.+..+.-.. .....+++. ++.+.++.-.++.+.++|..+.+.
T Consensus 24 ~Gl~~~--~dg~-Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v 98 (266)
T 2iwa_A 24 QGLVYA--ENDT-LFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSN 98 (266)
T ss_dssp EEEEEC--STTE-EEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEE
T ss_pred ccEEEe--CCCe-EEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcE
Confidence 456666 8775 4444443 5799999999999888765222 122345554 345666666789999999999999
Q ss_pred EEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCce
Q 017553 164 ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV 243 (369)
Q Consensus 164 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 243 (369)
+..+.. + ...-.. +++ ++..++++..++.|.++|..+.+....... ......-..+
T Consensus 99 ~~~i~~--g-~~~g~g--lt~-Dg~~l~vs~gs~~l~viD~~t~~v~~~I~V------------------g~~~~p~~~~ 154 (266)
T 2iwa_A 99 IKNFTH--Q-MKDGWG--LAT-DGKILYGSDGTSILYEIDPHTFKLIKKHNV------------------KYNGHRVIRL 154 (266)
T ss_dssp EEEEEC--C-SSSCCE--EEE-CSSSEEEECSSSEEEEECTTTCCEEEEEEC------------------EETTEECCCE
T ss_pred EEEEEC--C-CCCeEE--EEE-CCCEEEEECCCCeEEEEECCCCcEEEEEEE------------------CCCCcccccc
Confidence 988863 2 122223 444 444444555688999999988432211110 0000011124
Q ss_pred eeeeee-CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCC-------------CCCeeEEEEeecCCccEEEEe
Q 017553 244 DCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP-------------ECDIWFIKFSCDFHYNAAAIG 309 (369)
Q Consensus 244 ~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~-------------~~~i~~~~~s~~~~~~~l~~~ 309 (369)
..+.|. +...+....++.|.+.|+.+++ .+..+... ......++|+|+++ .+++++
T Consensus 155 nele~~dg~lyvn~~~~~~V~vID~~tg~---------V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~-~lfVTg 224 (266)
T 2iwa_A 155 NELEYINGEVWANIWQTDCIARISAKDGT---------LLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENK-RIFVTG 224 (266)
T ss_dssp EEEEEETTEEEEEETTSSEEEEEETTTCC---------EEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTT-EEEEEE
T ss_pred eeEEEECCEEEEecCCCCeEEEEECCCCc---------EEEEEECCCcccccccccccccCceEEEEEcCCCC-EEEEEC
Confidence 455555 4444444467899999999887 33333321 13568999999987 578888
Q ss_pred cCCCeEEEEEccCC
Q 017553 310 NREGKIFVWELQSS 323 (369)
Q Consensus 310 ~~dg~i~i~d~~~~ 323 (369)
...+.|.+.++...
T Consensus 225 k~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 225 KLWPKLFEIKLHLV 238 (266)
T ss_dssp TTCSEEEEEEEEEC
T ss_pred CCCCeEEEEEEecc
Confidence 88999999998765
No 245
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.08 E-value=3.8e-08 Score=85.38 Aligned_cols=259 Identities=11% Similarity=0.042 Sum_probs=154.0
Q ss_pred CccEEEEecCCc--EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEee------------------cC
Q 017553 48 YFNVFATVGGNR--VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG------------------IN 107 (369)
Q Consensus 48 ~~~~la~~~~~~--v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~------------------~d 107 (369)
||++|..+..+. |.+.|+.+.+..+.+.- ........+++.--|+++ ++++++ .+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~i----p~g~~phg~~~~~~p~~~-~v~~~~~~~~p~~~dg~~l~~~~~~~ 174 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEI----PNAKGIHGLRPQKWPRSN-YVFCNGEDETPLVNDGTNMEDVANYV 174 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEEC----SSCCSEEEEEECCSSBCS-EEEEEECSCEESSCSSSSTTCGGGEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeC----CCCCCCcceeeeecCCCc-EEEEecccccccCCCCcccccccccC
Confidence 567777666544 99999999988876642 122344455553227888 666663 45
Q ss_pred CeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCC------------------------------------
Q 017553 108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDE------------------------------------ 151 (369)
Q Consensus 108 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg------------------------------------ 151 (369)
+.+.+.|.++.+...++.--. ....++++| ++.++++.+.+.
T Consensus 175 ~~vtvID~~t~~v~~qI~Vgg-~pd~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~ 252 (595)
T 1fwx_A 175 NVFTAVDADKWEVAWQVLVSG-NLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE 252 (595)
T ss_dssp EEEEEEETTTTEEEEEEEESS-CCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE
T ss_pred ceEEEEECCCCeEEEEEEeCC-CccceEECC-CCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeE
Confidence 689999999988887776322 456788999 777777776543
Q ss_pred --cEEEEEccC--CcE-EEEeeccCCCCCcEEEEEecCCCce-EEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCC
Q 017553 152 --SVRLWNVQT--GIC-ILIFAGAGGHRNEVLSVDFHPSDIY-RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFP 225 (369)
Q Consensus 152 --~i~vwd~~~--~~~-~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~ 225 (369)
.|.+.|..+ ++. +..+. -.....++.++| +++ .++++..+.+|.++|+.+.+......+.
T Consensus 253 i~~V~VID~~~~~~~~~~~~Ip----vg~~PhGv~~sP-DGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~--------- 318 (595)
T 1fwx_A 253 LNGVKVVDGRKEASSLFTRYIP----IANNPHGCNMAP-DKKHLCVAGKLSPTVTVLDVTRFDAVFYENAD--------- 318 (595)
T ss_dssp ETTEEEEECSGGGCCSSEEEEE----EESSCCCEEECT-TSSEEEEECTTSSBEEEEEGGGHHHHHHSCCC---------
T ss_pred ECcEEEEeCcccCCceeEEEEe----cCCCceEEEEcC-CCCEEEEeCCCCCeEEEEECcccccccccccC---------
Confidence 467777776 444 44444 223456799999 555 5555567889999999974211000000
Q ss_pred CceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCC-CCCCccceeeeccCCCCCe-----eEEEE
Q 017553 226 TKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQS-PGEGTADILQKYPVPECDI-----WFIKF 297 (369)
Q Consensus 226 ~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~i-----~~~~~ 297 (369)
. ...+.....-......++|+ |...++...|+.|.+||+...... ......+.+.++..+..+- ..+.+
T Consensus 319 --~-~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~ 395 (595)
T 1fwx_A 319 --P-RSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETL 395 (595)
T ss_dssp --G-GGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTST
T ss_pred --c-ccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEe
Confidence 0 01111111223345667776 634455667999999998762100 0000122555555543321 23356
Q ss_pred eecCCccEEEEe--cCCCeE-----------EEEEccCCCceeEEEee
Q 017553 298 SCDFHYNAAAIG--NREGKI-----------FVWELQSSPPVLIARLS 332 (369)
Q Consensus 298 s~~~~~~~l~~~--~~dg~i-----------~i~d~~~~~~~~~~~~~ 332 (369)
+|||+ +|++. ....++ .++|+..++.+++....
T Consensus 396 ~~DGk--~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~lv~d~p 441 (595)
T 1fwx_A 396 DATND--WLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVLVHDGP 441 (595)
T ss_dssp TCCSS--EEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCEEEEEEE
T ss_pred CCCCC--EEEEcCCCCccccccCCCCCCCcceEEEcCCCcEEEEEEEc
Confidence 78998 44443 332334 88999877766665554
No 246
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.07 E-value=1.6e-06 Score=80.68 Aligned_cols=284 Identities=10% Similarity=0.050 Sum_probs=170.5
Q ss_pred CcCeEEEEEeeccCCCccEEEEecCCcEEEEEecCCceeEEEeeec---cCCcccceeEEEeeecCCCccEEEEeecCCe
Q 017553 33 KRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYV---DEDKEESFYTVSWACNVDGIPFLVAGGINGI 109 (369)
Q Consensus 33 ~~~v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~ 109 (369)
...|+++...+ +|.+.+... ++|.+|+..++... .+.... ..-....|.++... ++|. |-.|+.++-
T Consensus 262 ~~~i~~i~~d~----~g~lWigt~-~Gl~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~D--~~g~--lWigt~~~G 331 (795)
T 4a2l_A 262 SNYIRSLAMDS----QNRLWIGTF-NDLNIYHEGTDSFA-SYSSNPVENGSLSQRSVRSIFMD--SQGG--MWLGTYFGG 331 (795)
T ss_dssp CSBEEEEEECT----TSCEEEEES-SCEEEEETTTTEEE-EECCCTTSTTSCSSSCEEEEEEC--TTSC--EEEEESSSC
T ss_pred CCeEEEEEEcC----CCCEEEEeC-ChhheEcCCCCeEE-EEecCCCCCCCCCCCcEEEEEEe--CCcC--EEEEECCCC
Confidence 35689998876 467666554 48999997665432 222111 11133567777766 7886 777877777
Q ss_pred EEEEEcCCccccceeec-------cccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeecc-----CCCCCcE
Q 017553 110 IRVIDVSNEKLHKSFVG-------HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGA-----GGHRNEV 177 (369)
Q Consensus 110 i~vwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-----~~~~~~v 177 (369)
|..|+..++... .+.. ....|.++...+ ++. |..|+.++-|..||..+++........ .-....|
T Consensus 332 l~~~~~~~~~~~-~~~~~~~~~~l~~~~V~~i~~d~-~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v 408 (795)
T 4a2l_A 332 LNYYHPIRNRFK-NIRNIPYKNSLSDNVVSCIVEDK-DKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNI 408 (795)
T ss_dssp EEEECGGGGSSE-EECCCTTSSSCSCSSEEEEEECT-TSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCE
T ss_pred eEEeCCCcccce-EEcCCCCCCCCCCCeeEEEEECC-CCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccE
Confidence 889987654321 2211 235689998877 554 556777778999998877654432210 0124578
Q ss_pred EEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee-CcEEEEe
Q 017553 178 LSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSK 256 (369)
Q Consensus 178 ~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~ 256 (369)
.++...+ ++.+|..|+.++-|..||..++....-.. . ........|.++..+ ...|..|
T Consensus 409 ~~i~~d~-~g~~lWigt~~~Gl~~~d~~~~~~~~~~~-----------------~--~~~l~~~~v~~i~~d~~g~lwig 468 (795)
T 4a2l_A 409 KAVYVDE-KKSLVYIGTHAGGLSILHRNSGQVENFNQ-----------------R--NSQLVNENVYAILPDGEGNLWLG 468 (795)
T ss_dssp EEEEEET-TTTEEEEEETTTEEEEEETTTCCEEEECT-----------------T--TSCCSCSCEEEEEECSSSCEEEE
T ss_pred EEEEEcC-CCCEEEEEeCcCceeEEeCCCCcEEEeec-----------------C--CCCcCCCeeEEEEECCCCCEEEE
Confidence 9999887 66646667777779999987732110000 0 000234567777776 3445555
Q ss_pred ecCCeEEEecCCCCCCCCCCCccceeeec----cCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEee
Q 017553 257 SVDNEIVLWEPKMKEQSPGEGTADILQKY----PVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLS 332 (369)
Q Consensus 257 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 332 (369)
+. +.+.+||..+.+.. ..... ......|.++...+++. +..|+. +.|..||..+.+ . .+.
T Consensus 469 t~-~Gl~~~~~~~~~~~-------~~~~~~~~~~~~~~~i~~i~~d~~g~---lWigt~-~Gl~~~~~~~~~--~--~~~ 532 (795)
T 4a2l_A 469 TL-SALVRFNPEQRSFT-------TIEKEKDGTPVVSKQITTLFRDSHKR---LWIGGE-EGLSVFKQEGLD--I--QKA 532 (795)
T ss_dssp ES-SCEEEEETTTTEEE-------ECCBCTTCCBCCCCCEEEEEECTTCC---EEEEES-SCEEEEEEETTE--E--EEC
T ss_pred ec-CceeEEeCCCCeEE-------EccccccccccCCceEEEEEECCCCC---EEEEeC-CceEEEeCCCCe--E--EEe
Confidence 55 45888988765321 01000 11235678888877774 444555 458889988763 2 221
Q ss_pred c-----CCCccceEEEEecCCCCEEEEeecCCeEEEEecC
Q 017553 333 H-----AQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 333 ~-----~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 367 (369)
. ......|.++...++|.+.+++. .| |..||..
T Consensus 533 ~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~G-l~~~d~~ 570 (795)
T 4a2l_A 533 SILPVSNVTKLFTNCIYEASNGIIWVGTR-EG-FYCFNEK 570 (795)
T ss_dssp CCSCSCGGGGSCEEEEEECTTSCEEEEES-SC-EEEEETT
T ss_pred cCCCCCCCCCCeeEEEEECCCCCEEEEeC-CC-ceeECCC
Confidence 1 12235789999999998776544 34 7777754
No 247
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.04 E-value=1.6e-07 Score=83.41 Aligned_cols=113 Identities=12% Similarity=0.089 Sum_probs=67.2
Q ss_pred ccEEEEec-CCcEEEEEe-cCCceeEEEeeeccCCccc-----ce-eEEEeeecCCCccEEEEeecCCeEEEEEcCCccc
Q 017553 49 FNVFATVG-GNRVTVYQC-LEGGVIAALQSYVDEDKEE-----SF-YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL 120 (369)
Q Consensus 49 ~~~la~~~-~~~v~iw~~-~~~~~~~~~~~~~~~~~~~-----~v-~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~ 120 (369)
+.++++.. .+.|.-+|. .+|+.+-............ .+ ..++. .+. .++.++.|+.|..+|..+++.
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~v~v~~~dg~l~alD~~tG~~ 137 (571)
T 2ad6_A 63 DMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY----GAG-QIVKKQANGHLLALDAKTGKI 137 (571)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETT-EEEEECTTSEEEEEETTTCCE
T ss_pred CEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE----ECC-EEEEEeCCCEEEEEECCCCCE
Confidence 44444444 344999999 8998876654321100000 00 01121 233 688888899999999999998
Q ss_pred cceeeccc--c--ceEE-EEecCCCCceEEEEeC------CCcEEEEEccCCcEEEEeec
Q 017553 121 HKSFVGHG--D--SINE-IRTQPLKPSLVVSASK------DESVRLWNVQTGICILIFAG 169 (369)
Q Consensus 121 ~~~~~~~~--~--~v~~-~~~~~~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~ 169 (369)
+.+..... . .+.+ -... ++ .++.++. ++.|..+|.++|+.+..+..
T Consensus 138 ~W~~~~~~~~~~~~~~~~P~v~--~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 194 (571)
T 2ad6_A 138 NWEVEVCDPKVGSTLTQAPFVA--KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp EEEEECCCGGGTCBCCSCCEEE--TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred EEEecCCCCCccceeccCCEEE--CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEcc
Confidence 77655221 0 1111 1111 33 4555544 79999999999999988763
No 248
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=99.03 E-value=2e-07 Score=72.39 Aligned_cols=193 Identities=8% Similarity=-0.047 Sum_probs=126.2
Q ss_pred ccceeecccc--ceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCC
Q 017553 120 LHKSFVGHGD--SINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN 197 (369)
Q Consensus 120 ~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~ 197 (369)
.+.++. |.. -...+.|+. +.++.+.+.+|.|+++|+++++.+..+ . ....---.+++. ++.+++..-.++
T Consensus 45 Vv~~~p-hd~~~ftqGL~~~~--~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l--~~~~FgeGit~~--g~~Ly~ltw~~~ 116 (268)
T 3nok_A 45 IIREYP-HATNAFTQGLVFHQ--GHFFESTGHQGTLRQLSLESAQPVWME-R--LGNIFAEGLASD--GERLYQLTWTEG 116 (268)
T ss_dssp EEEEEE-CCTTCCEEEEEEET--TEEEEEETTTTEEEECCSSCSSCSEEE-E--CTTCCEEEEEEC--SSCEEEEESSSC
T ss_pred EEEEEc-CCCccccceEEEEC--CEEEEEcCCCCEEEEEECCCCcEEeEE-C--CCCcceeEEEEe--CCEEEEEEccCC
Confidence 345553 443 346888874 678888889999999999999988776 2 222222345655 456666666789
Q ss_pred cEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeeeCcEEEEeecCCeEEEecCCCCCCCCCCC
Q 017553 198 TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEG 277 (369)
Q Consensus 198 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 277 (369)
.+.+||..+.+.. ..+.. ...-..++++++.|+.+..++.|.++|..+.+
T Consensus 117 ~v~V~D~~Tl~~~-----------------------~ti~~-~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~------ 166 (268)
T 3nok_A 117 LLFTWSGMPPQRE-----------------------RTTRY-SGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFA------ 166 (268)
T ss_dssp EEEEEETTTTEEE-----------------------EEEEC-SSCCCCEEEETTEEEEECSSSEEEEECTTTCC------
T ss_pred EEEEEECCcCcEE-----------------------EEEeC-CCceeEEecCCCEEEEECCCCEEEEEcCCCCe------
Confidence 9999999985432 22222 22235677788877777779999999999876
Q ss_pred ccceeeeccCCC-----CCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeec---------CCCccceEEE
Q 017553 278 TADILQKYPVPE-----CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSH---------AQSKSPIRQT 343 (369)
Q Consensus 278 ~~~~~~~~~~~~-----~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------~~~~~~v~~~ 343 (369)
.+..+.... ..++.+.|. +++ +.+..-.++.|.+.|..+++......+.. .......+.+
T Consensus 167 ---v~~~I~V~~~g~~v~~lNeLe~~-dG~--lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGI 240 (268)
T 3nok_A 167 ---LVGAVQVKLRGQPVELINELECA-NGV--IYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGI 240 (268)
T ss_dssp ---EEEEEECEETTEECCCEEEEEEE-TTE--EEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEE
T ss_pred ---EEEEEEeCCCCcccccccccEEe-CCE--EEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEE
Confidence 333333211 234566766 553 55555578899999999996444444330 0122467899
Q ss_pred EecCCCCEEEEee
Q 017553 344 AMSYDGSTILSCC 356 (369)
Q Consensus 344 ~~s~~~~~l~s~~ 356 (369)
+|+|+++.|.+++
T Consensus 241 A~dp~~~rlfVTG 253 (268)
T 3nok_A 241 AVEPGSGRIFMTG 253 (268)
T ss_dssp EECTTTCCEEEEE
T ss_pred EEcCCCCEEEEeC
Confidence 9999876655554
No 249
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.01 E-value=1.3e-06 Score=81.24 Aligned_cols=286 Identities=9% Similarity=-0.013 Sum_probs=166.1
Q ss_pred CcCeEEEEEeeccCCCccEEEEecCCcEEEEEecCCceeEEEe-------ee--ccCCcccceeEEEeeecCCCccEEEE
Q 017553 33 KRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQ-------SY--VDEDKEESFYTVSWACNVDGIPFLVA 103 (369)
Q Consensus 33 ~~~v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~~~~~~~-------~~--~~~~~~~~v~~~~~~~~~~g~~~l~~ 103 (369)
...|+++...+ +|.+.+....++|.+++..++....... .. ...-....|.++... ++|. |-.
T Consensus 257 ~~~i~~i~~d~----~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D--~~g~--lWi 328 (781)
T 3v9f_A 257 SSYIFSIKQLK----DNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQD--SFNN--IWI 328 (781)
T ss_dssp CCCEEEEEECT----TSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEEC--SSCC--EEE
T ss_pred CceEEEEEECC----CCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEe--CCCC--EEE
Confidence 35688888776 5676665555779999976654322111 00 011234567777665 7776 777
Q ss_pred eecCCeEEEEEcCCccccceee----------ccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCC
Q 017553 104 GGINGIIRVIDVSNEKLHKSFV----------GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGH 173 (369)
Q Consensus 104 ~~~dg~i~vwd~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 173 (369)
|+.++-|..++..+.... .+. .....|.++...+ ++. |..|+.++-|..+|..++............
T Consensus 329 gt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~ 405 (781)
T 3v9f_A 329 GTWGGGINFISNAPPTFH-TWSYSPTQMNESSLSNKVVSSVCDDG-QGK-LWIGTDGGGINVFENGKRVAIYNKENRELL 405 (781)
T ss_dssp EEBSSCEEEECSSCCSCE-EEC----CCCSSCCSSSCEEEEEECT-TSC-EEEEEBSSCEEEEETTEEEEECC-----CC
T ss_pred EecCCeEEEeCCCCCcce-eeccCccccccCCCCCcceEEEEEcC-CCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCC
Confidence 777777888887654322 121 1235688998877 554 556676677899998654332211100123
Q ss_pred CCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee-CcE
Q 017553 174 RNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDF 252 (369)
Q Consensus 174 ~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~ 252 (369)
...|.++...+ ++. |..|+.++-|..+|..++.... ..........|.++..+ ...
T Consensus 406 ~~~v~~i~~d~-~g~-lWigt~~~Gl~~~~~~~~~~~~---------------------~~~~~~~~~~v~~i~~d~~g~ 462 (781)
T 3v9f_A 406 SNSVLCSLKDS-EGN-LWFGTYLGNISYYNTRLKKFQI---------------------IELEKNELLDVRVFYEDKNKK 462 (781)
T ss_dssp CSBEEEEEECT-TSC-EEEEETTEEEEEECSSSCEEEE---------------------CCSTTTCCCCEEEEEECTTSE
T ss_pred CcceEEEEECC-CCC-EEEEeccCCEEEEcCCCCcEEE---------------------eccCCCCCCeEEEEEECCCCC
Confidence 46789998876 665 4446666678888876632100 00001234567777776 445
Q ss_pred EEEeecCCeEEEecCCCCCCCCCCCccceeeecc---CCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEE
Q 017553 253 ILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP---VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA 329 (369)
Q Consensus 253 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 329 (369)
+..++. +-+..||..+.+.. ...... .....+.++...+++. |..|+..+-+..||..+++ ..
T Consensus 463 lwigt~-~Gl~~~~~~~~~~~-------~~~~~~~~~~~~~~i~~i~~d~~g~---lWigt~~~Gl~~~~~~~~~---~~ 528 (781)
T 3v9f_A 463 IWIGTH-AGVFVIDLASKKVI-------HHYDTSNSQLLENFVRSIAQDSEGR---FWIGTFGGGVGIYTPDMQL---VR 528 (781)
T ss_dssp EEEEET-TEEEEEESSSSSCC-------EEECTTTSSCSCSCEEEEEECTTCC---EEEEESSSCEEEECTTCCE---EE
T ss_pred EEEEEC-CceEEEeCCCCeEE-------ecccCcccccccceeEEEEEcCCCC---EEEEEcCCCEEEEeCCCCe---EE
Confidence 666666 66888998765421 111111 1135678888877774 5556654447888877652 22
Q ss_pred Eee--cCCCccceEEEEecCCCCEEEEeecCCeEEEEecC
Q 017553 330 RLS--HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 330 ~~~--~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 367 (369)
.+. .......|.++...++|.+.++.. +|.|..||..
T Consensus 529 ~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~ 567 (781)
T 3v9f_A 529 KFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSAR 567 (781)
T ss_dssp EECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTT
T ss_pred EccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCC
Confidence 232 112235789999999998776554 6654777754
No 250
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.01 E-value=5.5e-07 Score=81.65 Aligned_cols=155 Identities=12% Similarity=0.070 Sum_probs=97.3
Q ss_pred cEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeec------CCeEEEEEcCCccccc
Q 017553 50 NVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI------NGIIRVIDVSNEKLHK 122 (369)
Q Consensus 50 ~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~------dg~i~vwd~~~~~~~~ 122 (369)
..++.++.++ |..+|..+|+.+-....... .....+..--.. .++ .++++.. +|.|+.+|..+|+.+.
T Consensus 118 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~-~~~~~~~~~P~v--~~~--~v~vg~~~~~~~~~g~v~a~D~~tG~~~W 192 (668)
T 1kv9_A 118 DKVYVGTLDGRLIALDAKTGKAIWSQQTTDP-AKPYSITGAPRV--VKG--KVIIGNGGAEYGVRGFVSAYDADTGKLAW 192 (668)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECSCT-TSSCBCCSCCEE--ETT--EEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred CEEEEEcCCCEEEEEECCCCCEeeeeccCCC-CCcceecCCCEE--ECC--EEEEeCCCCCcCCCCEEEEEECCCCcEEE
Confidence 4566666566 99999999998877654211 001111110011 144 3555543 5899999999999877
Q ss_pred eeeccc-------------------------------cceEEEEecCCCCceEEEEeCCC-------------------c
Q 017553 123 SFVGHG-------------------------------DSINEIRTQPLKPSLVVSASKDE-------------------S 152 (369)
Q Consensus 123 ~~~~~~-------------------------------~~v~~~~~~~~~~~~l~s~~~dg-------------------~ 152 (369)
.+.... .....+++.| ...+++.++.++ .
T Consensus 193 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~ 271 (668)
T 1kv9_A 193 RFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSS 271 (668)
T ss_dssp EEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred EecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeee
Confidence 664210 0112467777 667787777665 4
Q ss_pred EEEEEccCCcEEEEeeccCCCC-------CcEEEEEecCCCce---EEEEEeeCCcEEEEEccCceeeee
Q 017553 153 VRLWNVQTGICILIFAGAGGHR-------NEVLSVDFHPSDIY---RIASCGMDNTVKIWSMKEFWTYVE 212 (369)
Q Consensus 153 i~vwd~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~---~l~~~~~d~~v~i~d~~~~~~~~~ 212 (369)
|..+|..+|+.+..++.. .|. .+.....+.. ++. .++.++.+|.++++|.++++....
T Consensus 272 v~AlD~~tG~~~W~~~~~-~~~~wd~~~~~~~~~~d~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~ 339 (668)
T 1kv9_A 272 ILAIRPDTGKLAWHYQVT-PGDSWDFTATQQITLAELNI-DGKPRKVLMQAPKNGFFYVLDRTNGKLISA 339 (668)
T ss_dssp EEEECTTTCCEEEEEESS-TTCCSCCCCCSCEEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred EEEEcCCCCceeeEeecC-CCccccccCCCCcEEEEecc-CCcEEEEEEEECCCCEEEEEECCCCCEecc
Confidence 999999999999888742 121 2222223222 343 688899999999999999876543
No 251
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=99.00 E-value=5.4e-07 Score=69.36 Aligned_cols=193 Identities=10% Similarity=-0.054 Sum_probs=123.6
Q ss_pred cceeeccc--cceEEEEecCCCCceEEEEeCCC--cEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeC
Q 017553 121 HKSFVGHG--DSINEIRTQPLKPSLVVSASKDE--SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD 196 (369)
Q Consensus 121 ~~~~~~~~--~~v~~~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 196 (369)
+.++ .|. .-...+.|++ +.++.+.+.+| .|+.+|+.+++.+..+... ...---.+++. ++.++...-.+
T Consensus 12 ~~~~-phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~--~~~fgeGi~~~--~~~ly~ltw~~ 84 (243)
T 3mbr_X 12 VKRY-PHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVP--PPYFGAGIVAW--RDRLIQLTWRN 84 (243)
T ss_dssp EEEE-ECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECC--TTCCEEEEEEE--TTEEEEEESSS
T ss_pred EEEc-CCCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCC--CCcceeEEEEe--CCEEEEEEeeC
Confidence 4444 354 3466889986 56777777754 8999999999999888631 11111344554 56666666778
Q ss_pred CcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeeeCcEEEEeecCCeEEEecCCCCCCCCCC
Q 017553 197 NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGE 276 (369)
Q Consensus 197 ~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 276 (369)
+.+.+||..+.+.. ..+... ..-..++++++.|+.+..++.|.++|..+.+
T Consensus 85 ~~v~v~D~~tl~~~-----------------------~ti~~~-~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~----- 135 (243)
T 3mbr_X 85 HEGFVYDLATLTPR-----------------------ARFRYP-GEGWALTSDDSHLYMSDGTAVIRKLDPDTLQ----- 135 (243)
T ss_dssp SEEEEEETTTTEEE-----------------------EEEECS-SCCCEEEECSSCEEEECSSSEEEEECTTTCC-----
T ss_pred CEEEEEECCcCcEE-----------------------EEEeCC-CCceEEeeCCCEEEEECCCCeEEEEeCCCCe-----
Confidence 99999999985432 222221 2235666777766666678999999999876
Q ss_pred CccceeeeccCCC-----CCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeec---------CCCccceEE
Q 017553 277 GTADILQKYPVPE-----CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSH---------AQSKSPIRQ 342 (369)
Q Consensus 277 ~~~~~~~~~~~~~-----~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------~~~~~~v~~ 342 (369)
.+..+.... ..++.+.+. +++ +.+..-.+..|.+.|..+++......+.. .......+.
T Consensus 136 ----~~~~I~V~~~g~~~~~lNeLe~~-~G~--lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNG 208 (243)
T 3mbr_X 136 ----QVGSIKVTAGGRPLDNLNELEWV-NGE--LLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNG 208 (243)
T ss_dssp ----EEEEEECEETTEECCCEEEEEEE-TTE--EEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEE
T ss_pred ----EEEEEEEccCCcccccceeeEEe-CCE--EEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEE
Confidence 333333321 234555655 453 55555567899999999996444444331 012245689
Q ss_pred EEecCCCCEEEEee
Q 017553 343 TAMSYDGSTILSCC 356 (369)
Q Consensus 343 ~~~s~~~~~l~s~~ 356 (369)
++++|+++.|.+.+
T Consensus 209 IA~d~~~~~lfVTG 222 (243)
T 3mbr_X 209 IAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEETTTTEEEEEE
T ss_pred EEEcCCCCEEEEEC
Confidence 99999887776665
No 252
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.99 E-value=1.1e-05 Score=75.08 Aligned_cols=286 Identities=10% Similarity=-0.010 Sum_probs=167.4
Q ss_pred cCeEEEEEeeccCCCccEEEEecCCcEEEEEecCCceeEEEeeec--cCCcccceeEEEeeecCCCccEEEEeecCCeEE
Q 017553 34 RPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYV--DEDKEESFYTVSWACNVDGIPFLVAGGINGIIR 111 (369)
Q Consensus 34 ~~v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~ 111 (369)
..|.++...+ ++.+.+.... ++.+||..+++......... .......|+++... ++|. |..|+..+-|.
T Consensus 211 ~~i~~i~~d~----~g~lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d--~~g~--lWigt~~~Gl~ 281 (781)
T 3v9f_A 211 NDVRCIYKDT----NGNIWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQL--KDNK--LWIATELNGIM 281 (781)
T ss_dssp SSEEEEEECT----TCCEEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEEC--TTSE--EEEEESSSCEE
T ss_pred CceeEEEEcC----CCCEEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEEC--CCCC--EEEEeCCCCeE
Confidence 4688888766 4677666554 89999966554322111100 01124567777665 7775 66677645688
Q ss_pred EEEcCCccccceee--------------ccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEee------ccC
Q 017553 112 VIDVSNEKLHKSFV--------------GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFA------GAG 171 (369)
Q Consensus 112 vwd~~~~~~~~~~~--------------~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~------~~~ 171 (369)
++|..+++...... -....|.++...+ ++. |-.|+.++-|..++..++....... ...
T Consensus 282 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~-~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 359 (781)
T 3v9f_A 282 ILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDS-FNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESS 359 (781)
T ss_dssp EEETTCC---------CEEECBCSSTTSBSSSCEEEEEECS-SCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSC
T ss_pred EECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeC-CCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCC
Confidence 89977654321111 1245788998887 554 6667777789999987654333211 000
Q ss_pred CCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee-C
Q 017553 172 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-G 250 (369)
Q Consensus 172 ~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~ 250 (369)
-....|.++...+ ++. |..|+.++-|..||..+..... + ..........|.++..+ .
T Consensus 360 l~~~~v~~i~~d~-~g~-lWigt~~~Gl~~~~~~~~~~~~---~-----------------~~~~~~~~~~v~~i~~d~~ 417 (781)
T 3v9f_A 360 LSNKVVSSVCDDG-QGK-LWIGTDGGGINVFENGKRVAIY---N-----------------KENRELLSNSVLCSLKDSE 417 (781)
T ss_dssp CSSSCEEEEEECT-TSC-EEEEEBSSCEEEEETTEEEEEC---C----------------------CCCSBEEEEEECTT
T ss_pred CCCcceEEEEEcC-CCC-EEEEeCCCcEEEEECCCCeEEE---c-----------------cCCCCCCCcceEEEEECCC
Confidence 1345689998886 555 5566666778889876521100 0 00001234567888776 5
Q ss_pred cEEEEeecCCeEEEecCCCCCCCCCCCccceeeecc---CCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCcee
Q 017553 251 DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP---VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVL 327 (369)
Q Consensus 251 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 327 (369)
..|..|+.++.+..+|..+++ +..+. .....|.++...+++ .|..|+. +.|..||..+++...
T Consensus 418 g~lWigt~~~Gl~~~~~~~~~----------~~~~~~~~~~~~~v~~i~~d~~g---~lwigt~-~Gl~~~~~~~~~~~~ 483 (781)
T 3v9f_A 418 GNLWFGTYLGNISYYNTRLKK----------FQIIELEKNELLDVRVFYEDKNK---KIWIGTH-AGVFVIDLASKKVIH 483 (781)
T ss_dssp SCEEEEETTEEEEEECSSSCE----------EEECCSTTTCCCCEEEEEECTTS---EEEEEET-TEEEEEESSSSSCCE
T ss_pred CCEEEEeccCCEEEEcCCCCc----------EEEeccCCCCCCeEEEEEECCCC---CEEEEEC-CceEEEeCCCCeEEe
Confidence 567777777789999987653 12221 234567777777766 4555555 569999988775433
Q ss_pred EEEee-cCCCccceEEEEecCCCCEEEEeecCCeEEEEecC
Q 017553 328 IARLS-HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 328 ~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 367 (369)
..... .......|.++...++|.+.+....+| +..||..
T Consensus 484 ~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~ 523 (781)
T 3v9f_A 484 HYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPD 523 (781)
T ss_dssp EECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTT
T ss_pred cccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCC
Confidence 22111 001136799999999998776543345 6667654
No 253
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.98 E-value=5e-06 Score=70.14 Aligned_cols=229 Identities=8% Similarity=-0.071 Sum_probs=136.7
Q ss_pred cEEEEecCCcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeecccc
Q 017553 50 NVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGD 129 (369)
Q Consensus 50 ~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 129 (369)
.+|+.+..+.|+.+++........+. .......++|. +.+..++++-...+.|+.+++........+.....
T Consensus 88 ~~l~~~~~~~I~~i~~~~~~~~~~~~------~~~~~~gl~~d--~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~ 159 (386)
T 3v65_B 88 PVLLFANRIDIRQVLPHRSEYTLLLN------NLENAIALDFH--HRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLE 159 (386)
T ss_dssp CEEEEECBSCEEEECTTSCCCEEEEC------SCSCEEEEEEE--TTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCS
T ss_pred ceeEeecCccceeeccCCCcEEEEec------CCCccEEEEEe--cCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCC
Confidence 45555656668888876554433332 22345567776 65553566666778999999876543333332233
Q ss_pred ceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeC-CcEEEEEccCce
Q 017553 130 SINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD-NTVKIWSMKEFW 208 (369)
Q Consensus 130 ~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-~~v~i~d~~~~~ 208 (369)
....+++.+.++.++++-...+.|.+.++........+. ........++++|.++.++++-... +.|..+++....
T Consensus 160 ~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~---~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~ 236 (386)
T 3v65_B 160 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW---QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG 236 (386)
T ss_dssp CCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEEC---SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred CccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeec---CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC
Confidence 456788887456666666677889888886544333333 2345678999998566666665555 678888876521
Q ss_pred eeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--Cc-EEEEeecCCeEEEecCCCCCCCCCCCccceeeec
Q 017553 209 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GD-FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY 285 (369)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 285 (369)
........-.....++++ +. +.++-...+.|..+|+..... ....
T Consensus 237 -----------------------~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~---------~~~~ 284 (386)
T 3v65_B 237 -----------------------RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR---------KAVI 284 (386)
T ss_dssp -----------------------CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC---------EEEE
T ss_pred -----------------------cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee---------EEEE
Confidence 111111223345677776 34 445545567899999865321 1111
Q ss_pred cCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCC
Q 017553 286 PVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP 324 (369)
Q Consensus 286 ~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~ 324 (369)
.........+++. .+ .++++-...+.|..++..+++
T Consensus 285 ~~~~~~P~giav~-~~--~ly~td~~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 285 SQGLPHPFAITVF-ED--SLYWTDWHTKSINSANKFTGK 320 (386)
T ss_dssp CSSCSSEEEEEEE-TT--EEEEEETTTTEEEEEETTTCC
T ss_pred ECCCCCceEEEEE-CC--EEEEeeCCCCeEEEEECCCCc
Confidence 1122345677773 33 366677778899999966654
No 254
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.97 E-value=3.6e-07 Score=70.99 Aligned_cols=197 Identities=17% Similarity=0.180 Sum_probs=113.9
Q ss_pred cccceeEEEeeecCCCccEEEEeecCC--eEEEEEcCCccccceeeccccceE--EEEecCCCCceEEEEeCCCcEEEEE
Q 017553 82 KEESFYTVSWACNVDGIPFLVAGGING--IIRVIDVSNEKLHKSFVGHGDSIN--EIRTQPLKPSLVVSASKDESVRLWN 157 (369)
Q Consensus 82 ~~~~v~~~~~~~~~~g~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~l~s~~~dg~i~vwd 157 (369)
|...-+.-.+.++ ++. ++.+.+.+| .|+++|+.+++.+..+.-.. ... .++.. ++.+.+..-.++.+.++|
T Consensus 39 hd~~~ftqGL~~~-~~~-LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~--g~~ly~ltw~~~~v~v~D 113 (262)
T 3nol_A 39 HDTKAFTEGFFYR-NGY-FYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDW--KDKIVGLTWKNGLGFVWN 113 (262)
T ss_dssp CCTTCEEEEEEEE-TTE-EEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred CCCCcccceEEEE-CCE-EEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEe--CCEEEEEEeeCCEEEEEE
Confidence 3333333333344 565 667777766 89999999999888876432 232 34443 345555566789999999
Q ss_pred ccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeec
Q 017553 158 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS 237 (369)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (369)
..+.+.+.++.. ...=..++ + ++..|+.+..++.|.++|..+.+........ ..
T Consensus 114 ~~t~~~~~ti~~----~~eG~glt--~-dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~-------------------~~ 167 (262)
T 3nol_A 114 IRNLRQVRSFNY----DGEGWGLT--H-NDQYLIMSDGTPVLRFLDPESLTPVRTITVT-------------------AH 167 (262)
T ss_dssp TTTCCEEEEEEC----SSCCCCEE--E-CSSCEEECCSSSEEEEECTTTCSEEEEEECE-------------------ET
T ss_pred CccCcEEEEEEC----CCCceEEe--c-CCCEEEEECCCCeEEEEcCCCCeEEEEEEec-------------------cC
Confidence 999999999873 22223444 3 3444555455788999999884432211110 00
Q ss_pred cCC-Cceeeeeee-CcEEEEeecCCeEEEecCCCCCCCCCCCccceeee---ccCCCCCeeEEEEeecCCccEEEEec
Q 017553 238 VHS-NYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQK---YPVPECDIWFIKFSCDFHYNAAAIGN 310 (369)
Q Consensus 238 ~~~-~~v~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~s~~~~~~~l~~~~ 310 (369)
+.+ ..+..+.|. |...+..-.++.|.+.|.++++.........+... ........+.++++|+.+ .++++|-
T Consensus 168 g~~~~~lNELe~~~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~-~lfVTGK 244 (262)
T 3nol_A 168 GEELPELNELEWVDGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHH-RLFVTGK 244 (262)
T ss_dssp TEECCCEEEEEEETTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTT-EEEEEET
T ss_pred CccccccceeEEECCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCC-EEEEECC
Confidence 111 223345555 55444444688999999998873211100000000 011124568899999887 4555554
No 255
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.97 E-value=5.5e-07 Score=80.02 Aligned_cols=115 Identities=7% Similarity=-0.007 Sum_probs=68.4
Q ss_pred cEEEEecC-Cc-EEEEEe-cCCceeEEEeeeccCCcc------cceeEEEeeecCCCc---cEEEEeecCCeEEEEEcCC
Q 017553 50 NVFATVGG-NR-VTVYQC-LEGGVIAALQSYVDEDKE------ESFYTVSWACNVDGI---PFLVAGGINGIIRVIDVSN 117 (369)
Q Consensus 50 ~~la~~~~-~~-v~iw~~-~~~~~~~~~~~~~~~~~~------~~v~~~~~~~~~~g~---~~l~~~~~dg~i~vwd~~~ 117 (369)
..+..++. ++ |.-+|. .+|+.+-........... .....+++. |.+. ..|+.++.|+.|..+|..+
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~--p~~g~~~~rV~v~t~dg~l~AlDa~T 140 (599)
T 1w6s_A 63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYW--PGDGKTPALILKTQLDGNVAALNAET 140 (599)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEE--CCCSSSCCEEEEECTTSEEEEEETTT
T ss_pred CEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEE--ecCCcceeEEEEEcCCCEEEEEECCC
Confidence 44444444 44 999999 899887766532110000 001112332 2333 1388888999999999999
Q ss_pred ccccceeecccc----ceEE-EEecCCCCceEEEEe------CCCcEEEEEccCCcEEEEeec
Q 017553 118 EKLHKSFVGHGD----SINE-IRTQPLKPSLVVSAS------KDESVRLWNVQTGICILIFAG 169 (369)
Q Consensus 118 ~~~~~~~~~~~~----~v~~-~~~~~~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~ 169 (369)
|+.+.+...... .+.+ -... ++ .++.++ .++.|+-+|.++|+.+..+..
T Consensus 141 G~~~W~~~~~~~~~~~~~~ssP~v~--~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 141 GETVWKVENSDIKVGSTLTIAPYVV--KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp CCEEEEEECCCGGGTCBCCSCCEEE--TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred CCEEEeecCCCCCccceeecCCEEE--CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence 998766543210 1111 1111 33 445544 379999999999999988773
No 256
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.97 E-value=9.1e-06 Score=67.52 Aligned_cols=241 Identities=8% Similarity=-0.087 Sum_probs=142.2
Q ss_pred CcCeEEEEEeeccCCCccEEEEecCCcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEE
Q 017553 33 KRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRV 112 (369)
Q Consensus 33 ~~~v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~v 112 (369)
.+...|.+..+ ..+|..+....|+..++........+. .......++|. +.+..++++-...+.|+.
T Consensus 33 ~d~~~C~~~~~-----~~~ll~~~~~~I~~i~~~g~~~~~~~~------~~~~~~~l~~d--~~~~~ly~~D~~~~~I~r 99 (349)
T 3v64_C 33 PDRRSCKALGP-----EPVLLFANRIDIRQVLPHRSEYTLLLN------NLENAIALDFH--HRRELVFWSDVTLDRILR 99 (349)
T ss_dssp TTSSCEEESSS-----CCEEEEECBSCEEEECTTSCCEEEEEC------SCSCEEEEEEE--TTTTEEEEEETTTTEEEE
T ss_pred CCCCccccccc-----CceeEeecccceEEEeCCCCeeEEeec------CCCceEEEEEe--ccccEEEEEeccCCceEE
Confidence 34456666555 245555555568888865544333322 22335667776 655535556667789999
Q ss_pred EEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEE
Q 017553 113 IDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIAS 192 (369)
Q Consensus 113 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 192 (369)
+++........+.........+++.+.++.++++-...+.|.+.++........+. ..-.....++++|.++.++++
T Consensus 100 ~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~---~~l~~P~~iavdp~~g~ly~t 176 (349)
T 3v64_C 100 ANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW---QSLEKPRAIALHPMEGTIYWT 176 (349)
T ss_dssp EETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC---TTCSCEEEEEEETTTTEEEEE
T ss_pred EecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEe---CCCCCcceEEEecCcCeEEEe
Confidence 99876543333332234457888887456666776777899999987554333332 234567899999866666666
Q ss_pred EeeC-CcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEE-EEeecCCeEEEecCC
Q 017553 193 CGMD-NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFI-LSKSVDNEIVLWEPK 268 (369)
Q Consensus 193 ~~~d-~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l-~~~~~d~~i~i~d~~ 268 (369)
-... +.|..+++.... ........-.....++++ +..| ++-...+.|..+|+.
T Consensus 177 d~~~~~~I~r~~~dG~~-----------------------~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d 233 (349)
T 3v64_C 177 DWGNTPRIEASSMDGSG-----------------------RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD 233 (349)
T ss_dssp ECSSSCEEEEEETTSCS-----------------------CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred ccCCCCEEEEEeCCCCC-----------------------cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 6555 778888876521 011111122345677776 4444 444556789999886
Q ss_pred CCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCC
Q 017553 269 MKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP 324 (369)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~ 324 (369)
.... .............+++. .+ .++++-...+.|..++..+++
T Consensus 234 G~~~---------~~~~~~~~~~P~giav~-~~--~ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 234 GSHR---------KAVISQGLPHPFAITVF-ED--SLYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp SCSC---------EEEECSSCSSEEEEEEE-TT--EEEEEETTTTEEEEEETTTCC
T ss_pred CCce---------EEEEeCCCCCceEEEEE-CC--EEEEecCCCCeEEEEEccCCC
Confidence 5321 11111122345667773 33 366666778889998865554
No 257
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.96 E-value=2.4e-06 Score=75.87 Aligned_cols=157 Identities=11% Similarity=0.097 Sum_probs=92.8
Q ss_pred ccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeec------CCeEEEEEcCCcccc
Q 017553 49 FNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI------NGIIRVIDVSNEKLH 121 (369)
Q Consensus 49 ~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~------dg~i~vwd~~~~~~~ 121 (369)
+..++.++.++ |..+|..+|+.+-....... .....+.+--.. .++ .+++++. +|.|+.+|..+++.+
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~-~~~~~~~~~P~v--~~g--~v~vg~~~~~~~~~g~v~a~D~~tG~~~ 189 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDP-KVGSTLTQAPFV--AKD--TVLMGCSGAELGVRGAVNAFDLKTGELK 189 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCG-GGTCBCCSCCEE--ETT--EEEEECBCGGGTCCCEEEEEETTTCCEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCC-CccceeccCCEE--ECC--EEEEEecCCccCCCCEEEEEECCCCcEE
Confidence 34555665555 99999999998776553110 000011111011 244 3555544 799999999999887
Q ss_pred ceeeccccc--------------------------------------eEEEEecCCCCceEEEEeCC-------------
Q 017553 122 KSFVGHGDS--------------------------------------INEIRTQPLKPSLVVSASKD------------- 150 (369)
Q Consensus 122 ~~~~~~~~~--------------------------------------v~~~~~~~~~~~~l~s~~~d------------- 150 (369)
.++...... ...+++.+ ....++.+..+
T Consensus 190 W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~-~~g~vy~~~g~~~~~~~~~~~gd~ 268 (571)
T 2ad6_A 190 WRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDP-KLNLFYYGSGNPAPWNETMRPGDN 268 (571)
T ss_dssp EEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCCSCSCGGGSCSCC
T ss_pred EEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcC-CCCeEEEECCCCccccCCccCCCc
Confidence 766532110 01345666 44555555432
Q ss_pred ---CcEEEEEccCCcEEEEeeccC-------CCCCcEEEEEecCCCc---eEEEEEeeCCcEEEEEccCceeeeee
Q 017553 151 ---ESVRLWNVQTGICILIFAGAG-------GHRNEVLSVDFHPSDI---YRIASCGMDNTVKIWSMKEFWTYVEK 213 (369)
Q Consensus 151 ---g~i~vwd~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~---~~l~~~~~d~~v~i~d~~~~~~~~~~ 213 (369)
+.|..+|..+|+.+..++... ....++. +...+ ++ ..++.++.+|.++++|.++++.....
T Consensus 269 ~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~ 342 (571)
T 2ad6_A 269 KWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPV-NGKMTPLLSHIDRNGILYTLNRENGNLIVAE 342 (571)
T ss_dssp TTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEE-TTEEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred eeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-Eeccc-CCcEEEEEEEeCCCcEEEEEECCCCCEEeee
Confidence 359999999999998887421 0112222 22223 45 46778888999999999997665444
No 258
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.94 E-value=5.4e-07 Score=69.98 Aligned_cols=190 Identities=8% Similarity=0.018 Sum_probs=115.0
Q ss_pred EEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceE--EEEecCCCCceEEEEeCCCcEEEEEccCCcEEE
Q 017553 88 TVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSIN--EIRTQPLKPSLVVSASKDESVRLWNVQTGICIL 165 (369)
Q Consensus 88 ~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 165 (369)
.+.+. ++. +..+.+.+|.|+++|+++++.+..+ - ..... .+++. ++.+.+....++.+.+||..+.+.+.
T Consensus 59 GL~~~---~~~-Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~ 130 (268)
T 3nok_A 59 GLVFH---QGH-FFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRER 130 (268)
T ss_dssp EEEEE---TTE-EEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEE
T ss_pred eEEEE---CCE-EEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEE
Confidence 45543 344 7778888899999999999988877 2 23332 35554 34566666778999999999999999
Q ss_pred EeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceee
Q 017553 166 IFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDC 245 (369)
Q Consensus 166 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 245 (369)
++.. ...-..+++. + ..|+.+..++.|.++|..+.+........ .-...-..+..
T Consensus 131 ti~~----~~eGwGLt~D--g-~~L~vSdGs~~l~~iDp~T~~v~~~I~V~------------------~~g~~v~~lNe 185 (268)
T 3nok_A 131 TTRY----SGEGWGLCYW--N-GKLVRSDGGTMLTFHEPDGFALVGAVQVK------------------LRGQPVELINE 185 (268)
T ss_dssp EEEC----SSCCCCEEEE--T-TEEEEECSSSEEEEECTTTCCEEEEEECE------------------ETTEECCCEEE
T ss_pred EEeC----CCceeEEecC--C-CEEEEECCCCEEEEEcCCCCeEEEEEEeC------------------CCCcccccccc
Confidence 9873 2333455543 4 44555556889999999885432221110 00001123345
Q ss_pred eeee-CcEEEEeecCCeEEEecCCCCCCCCCCCccceeee----ccCCCCCeeEEEEeecCCccEEEEecC
Q 017553 246 NRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQK----YPVPECDIWFIKFSCDFHYNAAAIGNR 311 (369)
Q Consensus 246 ~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~s~~~~~~~l~~~~~ 311 (369)
+.|. |...+..-.++.|.+.|..+++.........+... ........+.|+++|+++ .++++|-.
T Consensus 186 Le~~dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~-rlfVTGK~ 255 (268)
T 3nok_A 186 LECANGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSG-RIFMTGKL 255 (268)
T ss_dssp EEEETTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTC-CEEEEETT
T ss_pred cEEeCCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCC-EEEEeCCC
Confidence 5665 55444444688999999998873211110000000 011224568899999887 46666643
No 259
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.91 E-value=2.4e-06 Score=65.84 Aligned_cols=171 Identities=9% Similarity=0.007 Sum_probs=117.4
Q ss_pred ccceeeeeecccCC--cCeEEEEEeeccCCCccEEEEecCC---cEEEEEecCCceeEEEeeeccCCcccceeEEEeeec
Q 017553 20 KREYRVTNKLQEGK--RPLYAVVFNFIDSRYFNVFATVGGN---RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACN 94 (369)
Q Consensus 20 ~~~~~~~~~~~~h~--~~v~~~~~s~~~~~~~~~la~~~~~---~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 94 (369)
...++.++.+ .|. .-...+.|++ +.++.+.+.. .|+.+|+.+++.+..+... ...+.....
T Consensus 6 ~~~~~v~~~~-phd~~~ftqGL~~~~-----~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~------~~~fgeGi~-- 71 (243)
T 3mbr_X 6 TQGYRVVKRY-PHDTTAFTEGLFYLR-----GHLYESTGETGRSSVRKVDLETGRILQRAEVP------PPYFGAGIV-- 71 (243)
T ss_dssp BCCEEEEEEE-ECCTTCCEEEEEEET-----TEEEEEECCTTSCEEEEEETTTCCEEEEEECC------TTCCEEEEE--
T ss_pred ccceEEEEEc-CCCCccccccEEEEC-----CEEEEECCCCCCceEEEEECCCCCEEEEEeCC------CCcceeEEE--
Confidence 3456777777 454 3466899987 6777777764 3999999999998877531 222333333
Q ss_pred CCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCC
Q 017553 95 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR 174 (369)
Q Consensus 95 ~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 174 (369)
+.+..+....-.++.+.+||..+.+.+.++.... .-..++ + ++..|+.+..++.|.++|..+.+.+..+.... +.
T Consensus 72 ~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~-~Gwglt--~-dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~-~g 146 (243)
T 3mbr_X 72 AWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPG-EGWALT--S-DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTA-GG 146 (243)
T ss_dssp EETTEEEEEESSSSEEEEEETTTTEEEEEEECSS-CCCEEE--E-CSSCEEEECSSSEEEEECTTTCCEEEEEECEE-TT
T ss_pred EeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCC-CceEEe--e-CCCEEEEECCCCeEEEEeCCCCeEEEEEEEcc-CC
Confidence 2234255666678999999999999998887432 234555 3 44555555568899999999999888877311 11
Q ss_pred ---CcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeee
Q 017553 175 ---NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYV 211 (369)
Q Consensus 175 ---~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~ 211 (369)
..++.+.+. ++..++..-.+..|.+.|.++++...
T Consensus 147 ~~~~~lNeLe~~--~G~lyanvw~s~~I~vIDp~tG~V~~ 184 (243)
T 3mbr_X 147 RPLDNLNELEWV--NGELLANVWLTSRIARIDPASGKVVA 184 (243)
T ss_dssp EECCCEEEEEEE--TTEEEEEETTTTEEEEECTTTCBEEE
T ss_pred cccccceeeEEe--CCEEEEEECCCCeEEEEECCCCCEEE
Confidence 345677776 67777666667899999999966433
No 260
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.89 E-value=4.1e-07 Score=82.61 Aligned_cols=277 Identities=9% Similarity=-0.052 Sum_probs=143.4
Q ss_pred EEEEeeccCCCccEEEEecCC------------cEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEee
Q 017553 38 AVVFNFIDSRYFNVFATVGGN------------RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG 105 (369)
Q Consensus 38 ~~~~s~~~~~~~~~la~~~~~------------~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~ 105 (369)
++++.|. ++++++.|+.+ .+.+||+.+++-... ..... .+..-...+++. .+|+ +++.|+
T Consensus 190 ~~av~~~---~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~-~~~~~-~~~~~~~~~~~~--~~g~-lyv~GG 261 (656)
T 1k3i_A 190 AAAIEPT---SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDR-TVTVT-KHDMFCPGISMD--GNGQ-IVVTGG 261 (656)
T ss_dssp EEEEETT---TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCC-EEEEC-SCCCSSCEEEEC--TTSC-EEEECS
T ss_pred eEEEEec---CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeC-cccCC-CCCCccccccCC--CCCC-EEEeCC
Confidence 4566652 37888887632 278899877653222 21111 111112224444 7888 888887
Q ss_pred -cCCeEEEEEcCCcccc--ceeeccccceEEEEecCCCCceEEEEe-CC-----CcEEEEEccCCcEEEEe----eccCC
Q 017553 106 -INGIIRVIDVSNEKLH--KSFVGHGDSINEIRTQPLKPSLVVSAS-KD-----ESVRLWNVQTGICILIF----AGAGG 172 (369)
Q Consensus 106 -~dg~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d-----g~i~vwd~~~~~~~~~~----~~~~~ 172 (369)
.+..+.+||..+.+.. ..+.. ...-.+++..+ ++++++.|+ .+ ..+.+||..+++....- ....
T Consensus 262 ~~~~~v~~yd~~t~~W~~~~~~~~-~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~- 338 (656)
T 1k3i_A 262 NDAKKTSLYDSSSDSWIPGPDMQV-ARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPML- 338 (656)
T ss_dssp SSTTCEEEEEGGGTEEEECCCCSS-CCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGC-
T ss_pred CCCCceEEecCcCCceeECCCCCc-cccccceEEec-CCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccc-
Confidence 4568999998776432 22221 11223455556 778888888 44 57999999887643320 1000
Q ss_pred CCCcEEEEEecCCCceEEEEEeeCC---------cEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeee----ccC
Q 017553 173 HRNEVLSVDFHPSDIYRIASCGMDN---------TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA----SVH 239 (369)
Q Consensus 173 ~~~~v~~~~~~~~~~~~l~~~~~d~---------~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 239 (369)
.... ...+.. ++..++.++.+| .+..||..+....... ..... ...
T Consensus 339 ~~~~--~~~~~~-~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~------------------~~~~~~~~~~~~ 397 (656)
T 1k3i_A 339 TADK--QGLYRS-DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSA------------------GKRQSNRGVAPD 397 (656)
T ss_dssp CCCT--TGGGTT-TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEE------------------EECEETTEECCC
T ss_pred cccc--cceeec-CCceEEEECCCCcEEEecCccceeeeecCCcceeecC------------------CccccccccCCC
Confidence 0000 011223 455556665554 4566777653211000 00000 000
Q ss_pred CCceeeeee---eCcEEEEeecCC-----------eEEEecCCCCCCCCCCCccceeeeccCCCCC-eeEEEEeecCCcc
Q 017553 240 SNYVDCNRW---LGDFILSKSVDN-----------EIVLWEPKMKEQSPGEGTADILQKYPVPECD-IWFIKFSCDFHYN 304 (369)
Q Consensus 240 ~~~v~~~~~---~~~~l~~~~~d~-----------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~s~~~~~~ 304 (369)
...-.++.+ .+++++.|+.++ .+.+||..+..- ..+..-..+... -.+++..|+++
T Consensus 398 ~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W-------~~~~~~~mp~~R~~~~~~~l~~g~-- 468 (656)
T 1k3i_A 398 AMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPN-------TVFASNGLYFARTFHTSVVLPDGS-- 468 (656)
T ss_dssp CBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCE-------EEECTTCCSSCCBSCEEEECTTSC--
T ss_pred CCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCe-------eEEccCCCCCCcccCCeEECCCCC--
Confidence 111223322 377788887543 677888776531 111100112222 23445667886
Q ss_pred EEEEecCC-----------CeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeec
Q 017553 305 AAAIGNRE-----------GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCE 357 (369)
Q Consensus 305 ~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 357 (369)
+++.|+.+ ..+.+||..+.+...+..+. ..+.......+.|+|++++.|+.
T Consensus 469 i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~--~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 469 TFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNS--IVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp EEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCS--SCCCTTEEEEECTTSCEEEEECC
T ss_pred EEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCC--CccccccHhhcCCCcEEEecCCC
Confidence 77777643 56899999887433322222 22222334556799999999885
No 261
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.89 E-value=1.1e-06 Score=78.06 Aligned_cols=115 Identities=10% Similarity=0.056 Sum_probs=68.4
Q ss_pred ccEEEEecCCcEEEEEecCCceeEEEeeeccCCcc---cc-eeEEEeeecCCCccEEEEeecCCeEEEEEcCCcccccee
Q 017553 49 FNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKE---ES-FYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSF 124 (369)
Q Consensus 49 ~~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~---~~-v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~ 124 (369)
+.+++++..++|.-+|..+|+.+-........... .. -..++. .++ .++.++.++.|..+|..+|+.+...
T Consensus 69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~---~~~--~v~~~t~dg~l~AlD~~TG~~~W~~ 143 (582)
T 1flg_A 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI---YGD--KVFFGTLDASVVALNKNTGKVVWKK 143 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE---ETT--EEEEEETTTEEEEEESSSCCEEEEE
T ss_pred CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE---ECC--EEEEEeCCCEEEEEECCCCCEEeee
Confidence 45555555456999999999987776532211000 00 011111 133 5888888999999999999987666
Q ss_pred ecccc----ceE---EEEecCCCCc-eEEEEe------CCCcEEEEEccCCcEEEEee
Q 017553 125 VGHGD----SIN---EIRTQPLKPS-LVVSAS------KDESVRLWNVQTGICILIFA 168 (369)
Q Consensus 125 ~~~~~----~v~---~~~~~~~~~~-~l~s~~------~dg~i~vwd~~~~~~~~~~~ 168 (369)
..... .+. .+.=...+++ .++.++ .++.|+-+|..+|+.+....
T Consensus 144 ~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~ 201 (582)
T 1flg_A 144 KFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRP 201 (582)
T ss_dssp ECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEE
T ss_pred cCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecC
Confidence 53221 111 1111110122 555554 37899999999999988765
No 262
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.89 E-value=8.7e-06 Score=66.40 Aligned_cols=237 Identities=11% Similarity=0.047 Sum_probs=133.1
Q ss_pred eeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCC--cEEEEEccCCcE
Q 017553 86 FYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDE--SVRLWNVQTGIC 163 (369)
Q Consensus 86 v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~ 163 (369)
...++|. ++|. ++++-..++.|..||... +....+. ....+..+++.+ +++++++..... .|..+|..+++.
T Consensus 34 pegia~~--~~g~-lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~g~~ 107 (306)
T 2p4o_A 34 LENLASA--PDGT-IFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTV 107 (306)
T ss_dssp EEEEEEC--TTSC-EEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred cceEEEC--CCCC-EEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcC-CCcEEEEeccCCcceEEEEcCCCCeE
Confidence 3457777 8887 777766789999999764 3332222 335688999999 777666554332 466777777775
Q ss_pred EEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCce
Q 017553 164 ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV 243 (369)
Q Consensus 164 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 243 (369)
...... ........++..+ ++..+++-..++.|..+|...+............ .. .....-...
T Consensus 108 ~~~~~~--~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~-~~------------~~~~~~~~p 171 (306)
T 2p4o_A 108 ETLLTL--PDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLA-RS------------NSESVFPAA 171 (306)
T ss_dssp EEEEEC--TTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGS-CS------------STTCCSCSE
T ss_pred EEEEeC--CCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccc-cc------------cccCCCCcC
Confidence 443331 1222345555555 6665665556788888887653211100000000 00 000001122
Q ss_pred eeeeeeCcEE-EEeecCCeEEEecCCC-CCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEcc
Q 017553 244 DCNRWLGDFI-LSKSVDNEIVLWEPKM-KEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ 321 (369)
Q Consensus 244 ~~~~~~~~~l-~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~ 321 (369)
..+..+++.+ ++-...+.|..|++.. +.. .....+... .....+++.+++. +.++....+.|.++|..
T Consensus 172 ngis~dg~~lyv~d~~~~~I~~~~~~~~g~~----~~~~~~~~~----~~P~gi~vd~dG~--l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 172 NGLKRFGNFLYVSNTEKMLLLRIPVDSTDKP----GEPEIFVEQ----TNIDDFAFDVEGN--LYGATHIYNSVVRIAPD 241 (306)
T ss_dssp EEEEEETTEEEEEETTTTEEEEEEBCTTSCB----CCCEEEEES----CCCSSEEEBTTCC--EEEECBTTCCEEEECTT
T ss_pred CCcCcCCCEEEEEeCCCCEEEEEEeCCCCCC----CccEEEecc----CCCCCeEECCCCC--EEEEeCCCCeEEEECCC
Confidence 3344556555 4445578899999875 211 011112111 2346689999985 66666667889999975
Q ss_pred CCCceeEEEeecCCCccceEEEEec---CCCCEEEEeec
Q 017553 322 SSPPVLIARLSHAQSKSPIRQTAMS---YDGSTILSCCE 357 (369)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~v~~~~~s---~~~~~l~s~~~ 357 (369)
++...+..+. .....+++++|. |+++.|+.++.
T Consensus 242 -G~~~~~~~~~--~~~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 242 -RSTTIIAQAE--QGVIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp -CCEEEEECGG--GTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred -CCEEEEeecc--cccCCceEEEEecccCCCCEEEEECC
Confidence 4322222222 222468899998 88777766554
No 263
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.87 E-value=1.8e-05 Score=64.80 Aligned_cols=226 Identities=7% Similarity=-0.106 Sum_probs=131.9
Q ss_pred EEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccC----CcEEEEeeccCCCCC
Q 017553 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT----GICILIFAGAGGHRN 175 (369)
Q Consensus 100 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~----~~~~~~~~~~~~~~~ 175 (369)
+|+.+.. ..|+..|+...+....+. ....+..++|++.++.++++-...+.|..+++.. ......+. ..-.
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~---~~~~ 77 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS---RDIQ 77 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC---SSCS
T ss_pred EEEEECC-CeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEe---CCCC
Confidence 4444443 468999988766544443 3456789999984555666666778999999875 22222222 1223
Q ss_pred cEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEE
Q 017553 176 EVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFI 253 (369)
Q Consensus 176 ~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l 253 (369)
....+++.+.+++++++-...+.|.++++..... .............++.+ +..+
T Consensus 78 ~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~-----------------------~~~~~~~~~~P~~iavdp~~g~l 134 (316)
T 1ijq_A 78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-----------------------KTLFRENGSKPRAIVVDPVHGFM 134 (316)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE-----------------------EEEEECTTCCEEEEEEETTTTEE
T ss_pred CcCEEEEeecCCeEEEEECCCCEEEEEeCCCCce-----------------------EEEEECCCCCcceEEeCCCCCEE
Confidence 4578888864667777767788999998875211 01111122344566665 4444
Q ss_pred EEeec-C-CeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEe
Q 017553 254 LSKSV-D-NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARL 331 (369)
Q Consensus 254 ~~~~~-d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 331 (369)
+.+.. . +.|..+++..... ..+ ....-.....++++++++ .+.++-...+.|..+|+.......+...
T Consensus 135 y~~d~~~~~~I~~~~~dG~~~-------~~~--~~~~~~~P~gla~d~~~~-~lY~~D~~~~~I~~~d~dg~~~~~~~~~ 204 (316)
T 1ijq_A 135 YWTDWGTPAKIKKGGLNGVDI-------YSL--VTENIQWPNGITLDLLSG-RLYWVDSKLHSISSIDVNGGNRKTILED 204 (316)
T ss_dssp EEEECSSSCEEEEEETTSCCE-------EEE--ECSSCSCEEEEEEETTTT-EEEEEETTTTEEEEEETTSCSCEEEEEC
T ss_pred EEEccCCCCeEEEEcCCCCCe-------EEE--EECCCCCceEEEEeccCC-EEEEEECCCCeEEEEecCCCceEEEeec
Confidence 44433 2 6788887754321 011 111224567899998776 3455556778999999986543333222
Q ss_pred ecCCCccceEEEEecCCCCEEEEeecCCeEEEEec
Q 017553 332 SHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 366 (369)
Q Consensus 332 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~ 366 (369)
. ........+++. .+.++++-...+.|..++.
T Consensus 205 ~--~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~ 236 (316)
T 1ijq_A 205 E--KRLAHPFSLAVF-EDKVFWTDIINEAIFSANR 236 (316)
T ss_dssp T--TTTSSEEEEEEE-TTEEEEEETTTTEEEEEET
T ss_pred C--CccCCcEEEEEE-CCEEEEEECCCCeEEEEeC
Confidence 1 222346677875 3555666666778888774
No 264
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.83 E-value=2.6e-05 Score=63.83 Aligned_cols=230 Identities=5% Similarity=-0.071 Sum_probs=134.8
Q ss_pred EEEEecCCcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCC---ccccce-eec
Q 017553 51 VFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN---EKLHKS-FVG 126 (369)
Q Consensus 51 ~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~---~~~~~~-~~~ 126 (369)
+|+.+..+.|+..++........+.. ......++|. +++..++++-..++.|+.+++.. +..... +..
T Consensus 3 ~ll~~~~~~I~~i~~~~~~~~~~~~~------~~~p~g~~~d--~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~ 74 (316)
T 1ijq_A 3 YLFFTNRHEVRKMTLDRSEYTSLIPN------LRNVVALDTE--VASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR 74 (316)
T ss_dssp EEEEECBSSEEEEETTSCCCEEEECS------CSSEEEEEEE--TTTTEEEEEETTTTEEEEEEC--------CEEEECS
T ss_pred EEEEECCCeEEEEECCCcceEehhcC------CCceEEEEEE--eCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeC
Confidence 45666666799999877665544432 2345567776 76553666666778999999875 122222 222
Q ss_pred cccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeC-CcEEEEEcc
Q 017553 127 HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD-NTVKIWSMK 205 (369)
Q Consensus 127 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-~~v~i~d~~ 205 (369)
.-.....+++.+.++++.++-...+.|.+.++........+. ........++++|.++.++++.... +.|...++.
T Consensus 75 ~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~---~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d 151 (316)
T 1ijq_A 75 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR---ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN 151 (316)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE---CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred CCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEE---CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC
Confidence 223567888886455666666778899999987544333333 2345678999998566666655433 678888776
Q ss_pred CceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEE-EeecCCeEEEecCCCCCCCCCCCcccee
Q 017553 206 EFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFIL-SKSVDNEIVLWEPKMKEQSPGEGTADIL 282 (369)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 282 (369)
.... .......-.....++++ ++.|+ +-...+.|..+|+..... ..+
T Consensus 152 G~~~-----------------------~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~-------~~~ 201 (316)
T 1ijq_A 152 GVDI-----------------------YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-------KTI 201 (316)
T ss_dssp SCCE-----------------------EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------EEE
T ss_pred CCCe-----------------------EEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce-------EEE
Confidence 5110 00111123345677776 44554 444567899999875321 112
Q ss_pred eeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCC
Q 017553 283 QKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP 324 (369)
Q Consensus 283 ~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~ 324 (369)
............+++. .+ .++++-...+.|..++..+++
T Consensus 202 ~~~~~~~~~P~giav~-~~--~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 202 LEDEKRLAHPFSLAVF-ED--KVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp EECTTTTSSEEEEEEE-TT--EEEEEETTTTEEEEEETTTCC
T ss_pred eecCCccCCcEEEEEE-CC--EEEEEECCCCeEEEEeCCCCc
Confidence 1111112334567774 23 366666778899999986654
No 265
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.80 E-value=1.5e-05 Score=67.20 Aligned_cols=223 Identities=6% Similarity=-0.149 Sum_probs=132.4
Q ss_pred EEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEE
Q 017553 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLS 179 (369)
Q Consensus 100 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~ 179 (369)
+|+.+.. ..|+.+++........+. ....+..++|.+.++.++++-...+.|..+++..+.....+. ........
T Consensus 89 ~l~~~~~-~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~---~~~~~p~g 163 (386)
T 3v65_B 89 VLLFANR-IDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS---TGLESPGG 163 (386)
T ss_dssp EEEEECB-SCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC---SSCSCCCC
T ss_pred eeEeecC-ccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe---CCCCCccE
Confidence 4554443 568888876654433333 334578999998556666666677899999987665444333 12234567
Q ss_pred EEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEE-Ee
Q 017553 180 VDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFIL-SK 256 (369)
Q Consensus 180 ~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~-~~ 256 (369)
+++.+.++.++++-...+.|.+.++.... ..............++++ +..|+ +-
T Consensus 164 lavd~~~g~lY~~d~~~~~I~~~~~dg~~-----------------------~~~l~~~~l~~P~giavdp~~g~ly~td 220 (386)
T 3v65_B 164 LAVDWVHDKLYWTDSGTSRIEVANLDGAH-----------------------RKVLLWQSLEKPRAIALHPMEGTIYWTD 220 (386)
T ss_dssp EEEETTTTEEEEEETTTTEEEECBTTSCS-----------------------CEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCeEEEEcCCCCeEEEEeCCCCc-----------------------eEEeecCCCCCCcEEEEEcCCCeEEEec
Confidence 88887567777777777788888876521 111111222344666665 34444 33
Q ss_pred ecC-CeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCC
Q 017553 257 SVD-NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQ 335 (369)
Q Consensus 257 ~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 335 (369)
... +.|..+++..... .......-.....++++|++. .+.++-...+.|..+|+.......+ +. .
T Consensus 221 ~~~~~~I~r~~~dG~~~---------~~~~~~~~~~PnGlavd~~~~-~lY~aD~~~~~I~~~d~dG~~~~~~--~~--~ 286 (386)
T 3v65_B 221 WGNTPRIEASSMDGSGR---------RIIADTHLFWPNGLTIDYAGR-RMYWVDAKHHVIERANLDGSHRKAV--IS--Q 286 (386)
T ss_dssp CSSSCEEEEEETTSCSC---------EEEECSSCSCEEEEEEEGGGT-EEEEEETTTTEEEEECTTSCSCEEE--EC--S
T ss_pred cCCCCEEEEEeCCCCCc---------EEEEECCCCCeeeEEEeCCCC-EEEEEECCCCEEEEEeCCCCeeEEE--EE--C
Confidence 334 6788888765421 111111223467899998776 3555556778999999876532222 22 2
Q ss_pred CccceEEEEecCCCCEEEEeecCCeEEEEe
Q 017553 336 SKSPIRQTAMSYDGSTILSCCEDGAIWRWD 365 (369)
Q Consensus 336 ~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~ 365 (369)
.......+++. .+.++++-...+.|..++
T Consensus 287 ~~~~P~giav~-~~~ly~td~~~~~V~~~~ 315 (386)
T 3v65_B 287 GLPHPFAITVF-EDSLYWTDWHTKSINSAN 315 (386)
T ss_dssp SCSSEEEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred CCCCceEEEEE-CCEEEEeeCCCCeEEEEE
Confidence 23456778883 445556666677787776
No 266
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.78 E-value=2.6e-05 Score=60.97 Aligned_cols=218 Identities=11% Similarity=0.081 Sum_probs=133.7
Q ss_pred eeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEE
Q 017553 124 FVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWS 203 (369)
Q Consensus 124 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d 203 (369)
+.+-.+.+..++|+|+++.++++...++.|...|.. ++.++.+.. +-....-.+++.+ ++.++++.-.++.+.+++
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l--~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~ 97 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPL--DFVKDLETIEYIG-DNQFVISDERDYAIYVIS 97 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEEC--SSCSSEEEEEECS-TTEEEEEETTTTEEEEEE
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEec--CCCCChHHeEEeC-CCEEEEEECCCCcEEEEE
Confidence 444456799999999555566667888999999997 888877752 1225678889987 777767766678899998
Q ss_pred ccCceeee-eeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccc
Q 017553 204 MKEFWTYV-EKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTAD 280 (369)
Q Consensus 204 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 280 (369)
+....... .... ..++. ....+.....++|+ ++.|+++.......+|.+... . . .....
T Consensus 98 v~~~~~i~~~~~~--------------~~~~~-~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~-~-~-~~~l~ 159 (255)
T 3qqz_A 98 LTPNSEVKILKKI--------------KIPLQ-ESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGL-L-S-SNELH 159 (255)
T ss_dssp ECTTCCEEEEEEE--------------ECCCS-SCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEEST-T-C-SSCCE
T ss_pred cCCCCeeeeeeee--------------ccccc-cccccCCcceEEEeCCCCEEEEEECcCCceEEEEccc-c-c-CCcee
Confidence 87633210 0000 00000 11234557788897 446666666555555555411 0 0 00111
Q ss_pred eeee----ccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCC-----ccceEEEEecCCCCE
Q 017553 281 ILQK----YPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQS-----KSPIRQTAMSYDGST 351 (369)
Q Consensus 281 ~~~~----~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~ 351 (369)
.+.. -......+.++++.|... .+++.+.....+.++|.... ......+....+ -.....|+|.++|++
T Consensus 160 i~~~~~~~~~~~~~d~S~l~~dp~tg-~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~l 237 (255)
T 3qqz_A 160 ISKDKALQRQFTLDDVSGAEFNQQKN-TLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNI 237 (255)
T ss_dssp EEECHHHHHTCCSSCCCEEEEETTTT-EEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCE
T ss_pred eecchhhccccccCCceeEEEcCCCC-eEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCE
Confidence 1111 011234578999999876 57777788899999997754 444444442111 136789999999985
Q ss_pred EEEeecCCeEEEEec
Q 017553 352 ILSCCEDGAIWRWDA 366 (369)
Q Consensus 352 l~s~~~dg~i~vw~~ 366 (369)
.++ ++.+.++++.-
T Consensus 238 yIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 238 YIV-SEPNRFYRFTP 251 (255)
T ss_dssp EEE-ETTTEEEEEEC
T ss_pred EEE-cCCceEEEEEe
Confidence 555 67777776653
No 267
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.78 E-value=3.6e-05 Score=68.50 Aligned_cols=160 Identities=9% Similarity=-0.032 Sum_probs=93.3
Q ss_pred cEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeE-EEee-ecCCCccEEEEee------cCCeEEEEEcCCccc
Q 017553 50 NVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYT-VSWA-CNVDGIPFLVAGG------INGIIRVIDVSNEKL 120 (369)
Q Consensus 50 ~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~-~~~~g~~~l~~~~------~dg~i~vwd~~~~~~ 120 (369)
..++.++.++ |.-+|..+|+.+-..+..... ....+.. -.+. -..+|+..+++++ .+|.|+.+|..+++.
T Consensus 118 ~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~-~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 118 DKVFFGTLDASVVALNKNTGKVVWKKKFADHG-AGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECSCGG-GTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CEEEEEeCCCEEEEEECCCCCEEeeecCCCCC-cCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 4455555555 999999999987765532110 0001110 0111 0012332455554 378999999999987
Q ss_pred cceeeccccce-----------------------------------------EEEEecCCCCceEEEEeC----------
Q 017553 121 HKSFVGHGDSI-----------------------------------------NEIRTQPLKPSLVVSASK---------- 149 (369)
Q Consensus 121 ~~~~~~~~~~v-----------------------------------------~~~~~~~~~~~~l~s~~~---------- 149 (369)
+.........+ ..+++.| ...+++.+..
T Consensus 197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~-~~g~vyv~~gn~~~~~~~~r 275 (582)
T 1flg_A 197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDA-ETNTIIVGAGNPGPWNTWAR 275 (582)
T ss_dssp EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEET-TTTEEEEEECCBSSSCGGGG
T ss_pred EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcC-CCCEEEEeCCCCCcccCccc
Confidence 76543211000 1245556 4456665542
Q ss_pred ----------C----CcEEEEEccCCcEEEEeeccCCCC--------CcEEEEEec-CCCc---eEEEEEeeCCcEEEEE
Q 017553 150 ----------D----ESVRLWNVQTGICILIFAGAGGHR--------NEVLSVDFH-PSDI---YRIASCGMDNTVKIWS 203 (369)
Q Consensus 150 ----------d----g~i~vwd~~~~~~~~~~~~~~~~~--------~~v~~~~~~-~~~~---~~l~~~~~d~~v~i~d 203 (369)
| +.|.-+|..+|+.+..++.. .|. .++. +... . ++ ..++.++.+|.++++|
T Consensus 276 ~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~-~~d~wd~~~~~~p~l-~~~~~~-~G~~~~~v~~~~~~G~l~~lD 352 (582)
T 1flg_A 276 TAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHT-PNDAWDFSGNNELVL-FDYKAK-DGKIVKATAHADRNGFFYVVD 352 (582)
T ss_dssp SCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESS-TTCCSCCCCCCCCEE-EEEECS-SSCEEEEEEEECTTSEEEEEE
T ss_pred ccCCCcccccCCcccceEEEEeCCCCCEEEEEeCC-CCCcccccCCCCcEE-EeeecC-CCCEEEEEEEECCCceEEEEE
Confidence 2 58999999999999888631 121 2222 2221 2 44 4788899999999999
Q ss_pred ccCceeeeeee
Q 017553 204 MKEFWTYVEKS 214 (369)
Q Consensus 204 ~~~~~~~~~~~ 214 (369)
.++++......
T Consensus 353 ~~tG~~lw~~~ 363 (582)
T 1flg_A 353 RSNGKLQNAFP 363 (582)
T ss_dssp TTTCCEEEEEE
T ss_pred CCCCCEecccc
Confidence 99987655443
No 268
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.78 E-value=4.3e-05 Score=63.48 Aligned_cols=223 Identities=6% Similarity=-0.157 Sum_probs=131.7
Q ss_pred EEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEE
Q 017553 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLS 179 (369)
Q Consensus 100 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~ 179 (369)
+|+.+.. ..|+..++........+. ....+..++|++.++.++++-...+.|..+++..+.....+. ........
T Consensus 46 ~ll~~~~-~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~---~~~~~p~g 120 (349)
T 3v64_C 46 VLLFANR-IDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS---TGLESPGG 120 (349)
T ss_dssp EEEEECB-SCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC---SSCSCCCE
T ss_pred eeEeecc-cceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe---CCCCCccE
Confidence 4544443 457888876544333333 334578999998556566666677899999987665444333 12234567
Q ss_pred EEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcE-EEEe
Q 017553 180 VDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDF-ILSK 256 (369)
Q Consensus 180 ~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~-l~~~ 256 (369)
+++.+.+++++++-...+.|.+.++.... ..............++++ +.. +++-
T Consensus 121 lavd~~~g~ly~~d~~~~~I~~~~~dG~~-----------------------~~~l~~~~l~~P~~iavdp~~g~ly~td 177 (349)
T 3v64_C 121 LAVDWVHDKLYWTDSGTSRIEVANLDGAH-----------------------RKVLLWQSLEKPRAIALHPMEGTIYWTD 177 (349)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCS-----------------------CEEEECTTCSCEEEEEEETTTTEEEEEE
T ss_pred EEEecCCCeEEEEcCCCCeEEEEcCCCCc-----------------------eEEEEeCCCCCcceEEEecCcCeEEEec
Confidence 88887567777777777889999887621 111111222344666666 334 4443
Q ss_pred ecC-CeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCC
Q 017553 257 SVD-NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQ 335 (369)
Q Consensus 257 ~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 335 (369)
... +.|..+++..... .......-.....++++|++. .+.++-...+.|..+|+.......+ +. .
T Consensus 178 ~~~~~~I~r~~~dG~~~---------~~~~~~~~~~PnGla~d~~~~-~lY~aD~~~~~I~~~~~dG~~~~~~--~~--~ 243 (349)
T 3v64_C 178 WGNTPRIEASSMDGSGR---------RIIADTHLFWPNGLTIDYAGR-RMYWVDAKHHVIERANLDGSHRKAV--IS--Q 243 (349)
T ss_dssp CSSSCEEEEEETTSCSC---------EESCCSSCSCEEEEEEETTTT-EEEEEETTTTEEEEEETTSCSCEEE--EC--S
T ss_pred cCCCCEEEEEeCCCCCc---------EEEEECCCCCcceEEEeCCCC-EEEEEECCCCEEEEEeCCCCceEEE--Ee--C
Confidence 344 7788888765421 111111223467899998776 3455556678999999876532222 22 2
Q ss_pred CccceEEEEecCCCCEEEEeecCCeEEEEe
Q 017553 336 SKSPIRQTAMSYDGSTILSCCEDGAIWRWD 365 (369)
Q Consensus 336 ~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~ 365 (369)
.......+++. ++.++++-...+.|...+
T Consensus 244 ~~~~P~giav~-~~~ly~td~~~~~V~~~~ 272 (349)
T 3v64_C 244 GLPHPFAITVF-EDSLYWTDWHTKSINSAN 272 (349)
T ss_dssp SCSSEEEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred CCCCceEEEEE-CCEEEEecCCCCeEEEEE
Confidence 23456777873 445555555667777766
No 269
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.75 E-value=1.8e-06 Score=78.46 Aligned_cols=108 Identities=14% Similarity=0.069 Sum_probs=68.6
Q ss_pred C-CCccEEEEeecCC-----------eEEEEEcCCccccc--eeec-cccceEEEEecCCCCceEEEEeC-CCcEEEEEc
Q 017553 95 V-DGIPFLVAGGING-----------IIRVIDVSNEKLHK--SFVG-HGDSINEIRTQPLKPSLVVSASK-DESVRLWNV 158 (369)
Q Consensus 95 ~-~g~~~l~~~~~dg-----------~i~vwd~~~~~~~~--~~~~-~~~~v~~~~~~~~~~~~l~s~~~-dg~i~vwd~ 158 (369)
+ +|+ +++.|+.+. .+.+||..+++... .+.. +.....++++.+ ++.+++.|+. +..+.+||.
T Consensus 195 ~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~-~g~lyv~GG~~~~~v~~yd~ 272 (656)
T 1k3i_A 195 PTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG-NGQIVVTGGNDAKKTSLYDS 272 (656)
T ss_dssp TTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT-TSCEEEECSSSTTCEEEEEG
T ss_pred ecCCE-EEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCC-CCCEEEeCCCCCCceEEecC
Confidence 6 777 788876542 58899988776432 2221 223334566777 7888888884 568999999
Q ss_pred cCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEe-eC-----CcEEEEEccCc
Q 017553 159 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG-MD-----NTVKIWSMKEF 207 (369)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d-----~~v~i~d~~~~ 207 (369)
.+++.... ..+. ....-.+++..+ ++++++.|+ .+ ..+.+||..+.
T Consensus 273 ~t~~W~~~-~~~~-~~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 273 SSDSWIPG-PDMQ-VARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp GGTEEEEC-CCCS-SCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred cCCceeEC-CCCC-ccccccceEEec-CCeEEEEeCcccCCcccccceEeCCCCC
Confidence 88764432 2111 111223455556 788888888 34 46899999874
No 270
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.75 E-value=2.9e-05 Score=69.07 Aligned_cols=154 Identities=10% Similarity=0.070 Sum_probs=94.2
Q ss_pred EEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEee------cCCeEEEEEcCCcccccee
Q 017553 52 FATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG------INGIIRVIDVSNEKLHKSF 124 (369)
Q Consensus 52 la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~------~dg~i~vwd~~~~~~~~~~ 124 (369)
++.++.++ |.-+|..+|+.+-....... .....+..--.. .++. +++++ .+|.|+.+|..+|+.+.++
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~-~~~~~~~ssP~v--~~g~--V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~ 198 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDI-KVGSTLTIAPYV--VKDK--VIIGSSGAELGVRGYLTAYDVKTGEQVWRA 198 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCG-GGTCBCCSCCEE--ETTE--EEECCBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCC-CccceeecCCEE--ECCE--EEEEecccccCCCCeEEEEECCCCcEEEEE
Confidence 55666555 99999999988766543110 000111111111 2454 55554 3799999999999987666
Q ss_pred eccccc-------------------------------------e-EEEEecCCCCceEEEEeCC----------------
Q 017553 125 VGHGDS-------------------------------------I-NEIRTQPLKPSLVVSASKD---------------- 150 (369)
Q Consensus 125 ~~~~~~-------------------------------------v-~~~~~~~~~~~~l~s~~~d---------------- 150 (369)
...... + ..+++.+ ...+++.+..+
T Consensus 199 ~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~ 277 (599)
T 1w6s_A 199 YATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWT 277 (599)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTS
T ss_pred cCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeC-CCCEEEEeCCCCccccCcccCCCcccc
Confidence 532111 0 1344556 45566666554
Q ss_pred CcEEEEEccCCcEEEEeeccCCCC--------CcEEEEEec-CCCc---eEEEEEeeCCcEEEEEccCceeeeeee
Q 017553 151 ESVRLWNVQTGICILIFAGAGGHR--------NEVLSVDFH-PSDI---YRIASCGMDNTVKIWSMKEFWTYVEKS 214 (369)
Q Consensus 151 g~i~vwd~~~~~~~~~~~~~~~~~--------~~v~~~~~~-~~~~---~~l~~~~~d~~v~i~d~~~~~~~~~~~ 214 (369)
+.|.-+|..+|+.+..++.. .|. .++. +... . ++ ..++.++.+|.++++|.++++......
T Consensus 278 ~sv~Ald~~TG~~~W~~q~~-~~d~wd~d~~~~p~l-~d~~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~ 350 (599)
T 1w6s_A 278 MTIFGRDADTGEAKFGYQKT-PHDEWDYAGVNVMML-SEQKDK-DGKARKLLTHPDRNGIVYTLDRTDGALVSANK 350 (599)
T ss_dssp SEEEEEETTTCCEEEEEESS-TTCSSCCCCCCCCEE-EEEECT-TSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ceEEEEeCCCCceeeEeecC-CCccccccCCCccEE-Eecccc-CCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence 47999999999999888742 121 1222 2222 3 45 567788899999999999987665543
No 271
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.73 E-value=5.3e-06 Score=68.24 Aligned_cols=236 Identities=11% Similarity=0.001 Sum_probs=131.7
Q ss_pred EEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeec--------------------cccceEEEEecCCCCceEEEE
Q 017553 88 TVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG--------------------HGDSINEIRTQPLKPSLVVSA 147 (369)
Q Consensus 88 ~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--------------------~~~~v~~~~~~~~~~~~l~s~ 147 (369)
.++|. ++|. +++++..++.|..|+..+++. ..+.. ....+..+++.+.++ .|+.+
T Consensus 23 ~i~~d--~~g~-~l~v~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g-~l~v~ 97 (322)
T 2fp8_A 23 SFTFD--STNK-GFYTSVQDGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN-QLYIV 97 (322)
T ss_dssp CEECC--TTCS-SEEEECTTSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT-EEEEE
T ss_pred EEEEc--CCCC-EEEEEcCCCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceEEEcCCCC-cEEEE
Confidence 36666 8887 788888899999998765432 22210 113578899987334 45555
Q ss_pred eCCCcEEEEEccCCcEEEEeec-cCC-CCCcEEEEEecCCCceEEEEEee-----------------CCcEEEEEccCce
Q 017553 148 SKDESVRLWNVQTGICILIFAG-AGG-HRNEVLSVDFHPSDIYRIASCGM-----------------DNTVKIWSMKEFW 208 (369)
Q Consensus 148 ~~dg~i~vwd~~~~~~~~~~~~-~~~-~~~~v~~~~~~~~~~~~l~~~~~-----------------d~~v~i~d~~~~~ 208 (369)
...+.|..+|..+++. ..+.. ..+ .......+++.+.+++++++-.. ++.|..||..++.
T Consensus 98 d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 176 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE 176 (322)
T ss_dssp ETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred ECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence 5555688888765532 22221 001 11346788888723455554322 2567777765432
Q ss_pred eeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEe-ecCCeEEEecCCCCCCCCCCCccceeeec
Q 017553 209 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSK-SVDNEIVLWEPKMKEQSPGEGTADILQKY 285 (369)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 285 (369)
.. ...........++++ ++.++.+ ...+.|..|++..... .....+...
T Consensus 177 ~~------------------------~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~----~~~~~~~~~ 228 (322)
T 2fp8_A 177 TT------------------------LLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK----GTAEVLVKI 228 (322)
T ss_dssp EE------------------------EEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT----TCEEEEEEC
T ss_pred EE------------------------EeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC----CccceEEeC
Confidence 10 000011223456666 5555554 5568999999875321 111122221
Q ss_pred cCCCCCeeEEEEeecCCccEEEEecC----------CCeEEEEEccCCCceeEEEeecCC-C-ccceEEEEecCCCCEEE
Q 017553 286 PVPECDIWFIKFSCDFHYNAAAIGNR----------EGKIFVWELQSSPPVLIARLSHAQ-S-KSPIRQTAMSYDGSTIL 353 (369)
Q Consensus 286 ~~~~~~i~~~~~s~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~-~-~~~v~~~~~s~~~~~l~ 353 (369)
.. ...+++.+++. +.++... .+.|..+|.. ++ .+..+.... . ...++.+++ .++++++
T Consensus 229 ---~g-P~gi~~d~~G~--l~va~~~~~~~~~~~~~~~~v~~~d~~-G~--~~~~~~~~~g~~~~~~~~~~~-~~g~L~v 298 (322)
T 2fp8_A 229 ---PN-PGNIKRNADGH--FWVSSSEELDGNMHGRVDPKGIKFDEF-GN--ILEVIPLPPPFAGEHFEQIQE-HDGLLYI 298 (322)
T ss_dssp ---SS-EEEEEECTTSC--EEEEEEEETTSSTTSCEEEEEEEECTT-SC--EEEEEECCTTTTTSCCCEEEE-ETTEEEE
T ss_pred ---CC-CCCeEECCCCC--EEEEecCcccccccCCCccEEEEECCC-CC--EEEEEECCCCCccccceEEEE-eCCEEEE
Confidence 12 67788999885 3333322 4678888864 42 334443211 1 245666776 4677777
Q ss_pred EeecCCeEEEEecC
Q 017553 354 SCCEDGAIWRWDAI 367 (369)
Q Consensus 354 s~~~dg~i~vw~~~ 367 (369)
+...++.|.++++.
T Consensus 299 ~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 299 GTLFHGSVGILVYD 312 (322)
T ss_dssp ECSSCSEEEEEEC-
T ss_pred eecCCCceEEEecc
Confidence 76678889999875
No 272
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.71 E-value=3.9e-05 Score=63.06 Aligned_cols=240 Identities=11% Similarity=0.018 Sum_probs=130.3
Q ss_pred cCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccC---------------CcccceeEEEeeecC-C
Q 017553 34 RPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDE---------------DKEESFYTVSWACNV-D 96 (369)
Q Consensus 34 ~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~---------------~~~~~v~~~~~~~~~-~ 96 (369)
....++++++ +++++.++..++ |..|+..++.. ..+...... ........+++. + +
T Consensus 19 ~~p~~i~~d~----~g~~l~v~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~--~~~ 91 (322)
T 2fp8_A 19 YAPNSFTFDS----TNKGFYTSVQDGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYN--LQN 91 (322)
T ss_dssp SCCCCEECCT----TCSSEEEECTTSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEE--TTT
T ss_pred CCceEEEEcC----CCCEEEEEcCCCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceEEEc--CCC
Confidence 3456788888 577566665555 99998665443 222210000 011245566665 7 5
Q ss_pred CccEEEEeecCCeEEEEEcCCccccceeec-----cccceEEEEecCCCCceEEEEeC-----------------CCcEE
Q 017553 97 GIPFLVAGGINGIIRVIDVSNEKLHKSFVG-----HGDSINEIRTQPLKPSLVVSASK-----------------DESVR 154 (369)
Q Consensus 97 g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~s~~~-----------------dg~i~ 154 (369)
|. |+.+...+.|..+|..+++. ..+.. .......+++.+.++.+.++-.. ++.|.
T Consensus 92 g~--l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~ 168 (322)
T 2fp8_A 92 NQ--LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLI 168 (322)
T ss_dssp TE--EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEE
T ss_pred Cc--EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEE
Confidence 65 55554445588888765542 22221 11346788998733455554322 36788
Q ss_pred EEEccCCcEEEEeeccCCCCCcEEEEEecCCCce-EEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecce
Q 017553 155 LWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY-RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV 233 (369)
Q Consensus 155 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (369)
.+|..+++...... .......++++| +++ ++++-...+.|..|++....... ....
T Consensus 169 ~~d~~~~~~~~~~~----~~~~p~gia~~~-dg~~lyv~d~~~~~I~~~~~~~~~~~~------------------~~~~ 225 (322)
T 2fp8_A 169 KYDPSTKETTLLLK----ELHVPGGAEVSA-DSSFVLVAEFLSHQIVKYWLEGPKKGT------------------AEVL 225 (322)
T ss_dssp EEETTTTEEEEEEE----EESCCCEEEECT-TSSEEEEEEGGGTEEEEEESSSTTTTC------------------EEEE
T ss_pred EEeCCCCEEEEecc----CCccCcceEECC-CCCEEEEEeCCCCeEEEEECCCCcCCc------------------cceE
Confidence 88887666433322 122345799999 666 44555667899999987521000 0001
Q ss_pred eeeccCCCceeeeeee--CcEEEEeec----------CCeEEEecCCCCCCCCCCCccceeeeccCC----CCCeeEEEE
Q 017553 234 FIASVHSNYVDCNRWL--GDFILSKSV----------DNEIVLWEPKMKEQSPGEGTADILQKYPVP----ECDIWFIKF 297 (369)
Q Consensus 234 ~~~~~~~~~v~~~~~~--~~~l~~~~~----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~ 297 (369)
... .. ...++++ |++.++... .+.|..+|.. ++ .+..+... -..+..+++
T Consensus 226 ~~~---~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~---------~~~~~~~~~g~~~~~~~~~~~ 291 (322)
T 2fp8_A 226 VKI---PN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GN---------ILEVIPLPPPFAGEHFEQIQE 291 (322)
T ss_dssp EEC---SS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SC---------EEEEEECCTTTTTSCCCEEEE
T ss_pred EeC---CC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CC---------EEEEEECCCCCccccceEEEE
Confidence 111 12 4556665 555555433 4668888864 32 23333322 134556665
Q ss_pred eecCCccEEEEecCCCeEEEEEccCC
Q 017553 298 SCDFHYNAAAIGNREGKIFVWELQSS 323 (369)
Q Consensus 298 s~~~~~~~l~~~~~dg~i~i~d~~~~ 323 (369)
.++ .+.++....+.|..+++...
T Consensus 292 -~~g--~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 292 -HDG--LLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp -ETT--EEEEECSSCSEEEEEEC---
T ss_pred -eCC--EEEEeecCCCceEEEecccc
Confidence 344 35556667788999987654
No 273
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.67 E-value=6.1e-05 Score=58.85 Aligned_cols=168 Identities=10% Similarity=0.105 Sum_probs=108.8
Q ss_pred eecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEee
Q 017553 27 NKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG 105 (369)
Q Consensus 27 ~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~ 105 (369)
+.+.+-...+..++|+|+ .+.++++...+. |...|.. ++.+..+.. ......-.+++. +++. ++++.-
T Consensus 20 ~~l~g~~~~lSGla~~~~---~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l----~g~~D~EGIa~~--~~g~-~~vs~E 88 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQ---SNTLFSTINKPAAIVEMTTN-GDLIRTIPL----DFVKDLETIEYI--GDNQ-FVISDE 88 (255)
T ss_dssp EECTTCCSCEEEEEEETT---TTEEEEEEETTEEEEEEETT-CCEEEEEEC----SSCSSEEEEEEC--STTE-EEEEET
T ss_pred eECCCcccCcceeEEeCC---CCEEEEEECCCCeEEEEeCC-CCEEEEEec----CCCCChHHeEEe--CCCE-EEEEEC
Confidence 356677778999999994 245666666666 8888966 777666642 112345557776 8887 666666
Q ss_pred cCCeEEEEEcCCcccc---ceee------ccccceEEEEecCCCCceEEEEeCCCcEEEEEccC---CcEEEEeec----
Q 017553 106 INGIIRVIDVSNEKLH---KSFV------GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT---GICILIFAG---- 169 (369)
Q Consensus 106 ~dg~i~vwd~~~~~~~---~~~~------~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~---~~~~~~~~~---- 169 (369)
.++.+.++++.....+ .... ..+.....|+|+| .++.|+++.+.....+|.+.. ...+..+..
T Consensus 89 ~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~-~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~ 167 (255)
T 3qqz_A 89 RDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSR-QDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQ 167 (255)
T ss_dssp TTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEET-TTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHH
T ss_pred CCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeC-CCCEEEEEECcCCceEEEEcccccCCceeeecchhhc
Confidence 6788999987654321 1111 1344578999999 565566666555556666541 111222211
Q ss_pred cCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccC
Q 017553 170 AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206 (369)
Q Consensus 170 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~ 206 (369)
...+...+.+++++|..+.+++.....+.|.++|...
T Consensus 168 ~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g 204 (255)
T 3qqz_A 168 RQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVG 204 (255)
T ss_dssp HTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTC
T ss_pred cccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCC
Confidence 0123446789999998888888888888899999776
No 274
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.65 E-value=0.00013 Score=61.70 Aligned_cols=225 Identities=7% Similarity=-0.105 Sum_probs=132.5
Q ss_pred EEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCC----cEEEEeeccCCCCC
Q 017553 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG----ICILIFAGAGGHRN 175 (369)
Q Consensus 100 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~ 175 (369)
+|+.+. ...|+..++........+ .....+..|+|++.++.++++-...+.|+.+++... .....+. ....
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~-~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~---~~~~ 159 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS---RDIQ 159 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC---SSCS
T ss_pred eeEEec-cceeEEEccCCcceeEec-cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe---CCCC
Confidence 555554 468899998765443333 345678899999855556666566788999988652 2222232 2345
Q ss_pred cEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEE
Q 017553 176 EVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFI 253 (369)
Q Consensus 176 ~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l 253 (369)
....+++.+.+++++++-...+.|.+.++.... ..............++++ +..|
T Consensus 160 ~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~-----------------------~~~l~~~~~~~P~~iavdp~~g~l 216 (400)
T 3p5b_L 160 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-----------------------RKTLFRENGSKPRAIVVDPVHGFM 216 (400)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEECTTTCS-----------------------EEEEEECSSCCEEEEEEETTTTEE
T ss_pred CcccEEEEecCCceEEEECCCCeEEEEeCCCCc-----------------------eEEEEeCCCCCcceEEEecccCeE
Confidence 677888886567777777777889988887621 111111222335666665 3444
Q ss_pred EEeec--CCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEe
Q 017553 254 LSKSV--DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARL 331 (369)
Q Consensus 254 ~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 331 (369)
+.... .+.|...++..... .......-.....++++++++ .+.++-...+.|..+|+.......+...
T Consensus 217 y~td~~~~~~I~~~~~dG~~~---------~~~~~~~l~~P~glavd~~~~-~lY~aD~~~~~I~~~d~dG~~~~~~~~~ 286 (400)
T 3p5b_L 217 YWTDWGTPAKIKKGGLNGVDI---------YSLVTENIQWPNGITLDLLSG-RLYWVDSKLHSISSIDVNGGNRKTILED 286 (400)
T ss_dssp EEEECSSSCCEEEEETTSCSC---------EEEECSSCSCEEEEEEETTTT-EEEEEETTTTEEEEEETTSCCCEEEEEC
T ss_pred EEEeCCCCCEEEEEeCCCCcc---------EEEEECCCCceEEEEEEeCCC-EEEEEECCCCEEEEEeCCCCccEEEEeC
Confidence 44332 36788888765431 111112224567899998776 3444556678999999987643333322
Q ss_pred ecCCCccceEEEEecCCCCEEEEeecCCeEEEEe
Q 017553 332 SHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 365 (369)
Q Consensus 332 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~ 365 (369)
. ........+++. .+.++.+-...+.|..+|
T Consensus 287 ~--~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~ 317 (400)
T 3p5b_L 287 E--KRLAHPFSLAVF-EDKVFWTDIINEAIFSAN 317 (400)
T ss_dssp S--STTSSEEEEEEE-TTEEEEEESSSCSEEEEE
T ss_pred C--CCCCCCEEEEEe-CCEEEEecCCCCeEEEEE
Confidence 1 222345577773 334555555667787776
No 275
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.64 E-value=0.0001 Score=60.00 Aligned_cols=238 Identities=10% Similarity=-0.008 Sum_probs=131.5
Q ss_pred cccccceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecC
Q 017553 17 PSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNV 95 (369)
Q Consensus 17 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 95 (369)
+....+.+....+... .....++|+| +++++++...++ |..||... +....+. .......+++. +
T Consensus 16 ~~~~~~~~~~~~~p~~-~~pegia~~~----~g~lyv~d~~~~~I~~~d~~g-~~~~~~~------~~~~p~gia~~--~ 81 (306)
T 2p4o_A 16 PIELAPAKIITSFPVN-TFLENLASAP----DGTIFVTNHEVGEIVSITPDG-NQQIHAT------VEGKVSGLAFT--S 81 (306)
T ss_dssp CBCCCCEEEEEEECTT-CCEEEEEECT----TSCEEEEETTTTEEEEECTTC-CEEEEEE------CSSEEEEEEEC--T
T ss_pred CCcCCCceEeEeCCCC-CCcceEEECC----CCCEEEEeCCCCeEEEECCCC-ceEEEEe------CCCCceeEEEc--C
Confidence 3345566666666543 5678999998 577777765555 98888543 3333222 12345667766 8
Q ss_pred CCccEEEEeec-C-CeEEEEEcCCccccceee-ccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcE-EEEeec--
Q 017553 96 DGIPFLVAGGI-N-GIIRVIDVSNEKLHKSFV-GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC-ILIFAG-- 169 (369)
Q Consensus 96 ~g~~~l~~~~~-d-g~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~-- 169 (369)
+|+ ++++... + ..|..++..+++...... ........++..+ ++..+++-..++.|.++|..+++. +.....
T Consensus 82 dG~-l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~ 159 (306)
T 2p4o_A 82 NGD-LVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPML 159 (306)
T ss_dssp TSC-EEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGG
T ss_pred CCc-EEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCcc
Confidence 998 5555433 2 247777777766432221 1112234455445 555555555688999999876532 221110
Q ss_pred ----cCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccC-ceeeeeeeeeccCCCCCCCCceeecceeeeccCCCcee
Q 017553 170 ----AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE-FWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD 244 (369)
Q Consensus 170 ----~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 244 (369)
....-.....+ +|+++.++++-...+.|..+++.. +.... ....... ....
T Consensus 160 ~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~------------------~~~~~~~----~~P~ 215 (306)
T 2p4o_A 160 ARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGE------------------PEIFVEQ----TNID 215 (306)
T ss_dssp SCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCC------------------CEEEEES----CCCS
T ss_pred ccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCc------------------cEEEecc----CCCC
Confidence 00111234555 663445666666778899999875 11000 0001111 2334
Q ss_pred eeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEe---ecCC
Q 017553 245 CNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFS---CDFH 302 (369)
Q Consensus 245 ~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s---~~~~ 302 (369)
.++++ |++.++....+.|.++|.. ++. ..+..........++++|. ++++
T Consensus 216 gi~vd~dG~l~va~~~~~~V~~~~~~-G~~-------~~~~~~~~~~~~p~~~a~~g~~~d~~ 270 (306)
T 2p4o_A 216 DFAFDVEGNLYGATHIYNSVVRIAPD-RST-------TIIAQAEQGVIGSTAVAFGQTEGDCT 270 (306)
T ss_dssp SEEEBTTCCEEEECBTTCCEEEECTT-CCE-------EEEECGGGTCTTEEEEEECCSTTTTT
T ss_pred CeEECCCCCEEEEeCCCCeEEEECCC-CCE-------EEEeecccccCCceEEEEecccCCCC
Confidence 55555 6666666667889999975 321 0122333333567889998 7766
No 276
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.63 E-value=0.00015 Score=61.41 Aligned_cols=231 Identities=5% Similarity=-0.080 Sum_probs=136.3
Q ss_pred cEEEEecCCcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCcc----ccceee
Q 017553 50 NVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK----LHKSFV 125 (369)
Q Consensus 50 ~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~----~~~~~~ 125 (369)
.+|+.+....|+..++........+. ....+..++|. +.+..++.+-...+.|+.+++.... ....+.
T Consensus 84 ~~ll~~~~~~I~~i~l~~~~~~~~~~------~~~~~~~l~~d--~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~ 155 (400)
T 3p5b_L 84 AYLFFTNRHEVRKMTLDRSEYTSLIP------NLRNVVALDTE--VASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS 155 (400)
T ss_dssp CEEEEEETTEEEEECTTSCSCEEEEC------SCSCEEEEEEE--TTTTEEEEEETTTTEEEEEEC------CCCEEEEC
T ss_pred ceeEEeccceeEEEccCCcceeEecc------ccCcceEEeee--eccCceEEEecCCCeEEEEEcccCCCCCcceEEEe
Confidence 46666666678888877655444333 23455667777 6555255555667889999986522 222222
Q ss_pred ccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEee-CCcEEEEEc
Q 017553 126 GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM-DNTVKIWSM 204 (369)
Q Consensus 126 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~~v~i~d~ 204 (369)
........+++.+..+++.++-...+.|.+.++........+. ........++++|.++.++++-.. .+.|...++
T Consensus 156 ~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~---~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~ 232 (400)
T 3p5b_L 156 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR---ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 232 (400)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEE---CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEET
T ss_pred CCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEe---CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeC
Confidence 2334677888887556666676778899999987655444443 244557899999856666665433 367888887
Q ss_pred cCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEe-ecCCeEEEecCCCCCCCCCCCccce
Q 017553 205 KEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSK-SVDNEIVLWEPKMKEQSPGEGTADI 281 (369)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~ 281 (369)
.... ........-.....|+++ ++.|+.+ ...+.|..+|+..... ..
T Consensus 233 dG~~-----------------------~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-------~~ 282 (400)
T 3p5b_L 233 NGVD-----------------------IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-------KT 282 (400)
T ss_dssp TSCS-----------------------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC-------EE
T ss_pred CCCc-----------------------cEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc-------EE
Confidence 6521 111111222455677776 4455444 4567899999865431 11
Q ss_pred eeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCC
Q 017553 282 LQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP 324 (369)
Q Consensus 282 ~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~ 324 (369)
+............+++ ++. .++++-...+.|..+|..+++
T Consensus 283 ~~~~~~~l~~P~gl~v--~~~-~lywtd~~~~~V~~~~~~~G~ 322 (400)
T 3p5b_L 283 ILEDEKRLAHPFSLAV--FED-KVFWTDIINEAIFSANRLTGS 322 (400)
T ss_dssp EEECSSTTSSEEEEEE--ETT-EEEEEESSSCSEEEEESSSCC
T ss_pred EEeCCCCCCCCEEEEE--eCC-EEEEecCCCCeEEEEEcCCCC
Confidence 2111111233445666 333 366666777889999976664
No 277
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.62 E-value=0.00027 Score=65.02 Aligned_cols=231 Identities=5% Similarity=-0.081 Sum_probs=132.4
Q ss_pred cEEEEecCCcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCc----cccceee
Q 017553 50 NVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE----KLHKSFV 125 (369)
Q Consensus 50 ~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~----~~~~~~~ 125 (369)
.+|+.+....|+..++........+. ....+..+++. +....++++-...+.|+.+++... .....+.
T Consensus 396 p~Ll~an~~~Ir~i~l~~~~~~~l~~------~~~~~~gl~~d--~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~ 467 (791)
T 3m0c_C 396 AYLFFTNRHEVRKMTLDRSEYTSLIP------NLRNVVALDTE--VASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS 467 (791)
T ss_dssp CEEEEECBSSEEEECTTSCCCEEEEC------SCSSEEEEEEE--TTTTEEEEEETTTTEEEEEEC--------CEEEEC
T ss_pred cccccccccceeEeeccCCcceeeec------CCCceEEEeec--ccCCeeEEeeccceeEEEEeccCCCCCcceeEEEe
Confidence 35555555668888876554433333 22345556666 644426666667788999998653 2222232
Q ss_pred ccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeC-CcEEEEEc
Q 017553 126 GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD-NTVKIWSM 204 (369)
Q Consensus 126 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-~~v~i~d~ 204 (369)
........|++.+..++++++-...+.|.+.++........+. ........|++.|..+.++++-... +.|...++
T Consensus 468 ~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~---~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~ 544 (791)
T 3m0c_C 468 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR---ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 544 (791)
T ss_dssp SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE---CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred cCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEe---CCCCCcceEEEecCCCCEEEecCCCCCeEEEEec
Confidence 2334567888887455677777778899999997554433333 2445688999998556666655333 67888887
Q ss_pred cCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEe-ecCCeEEEecCCCCCCCCCCCccce
Q 017553 205 KEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSK-SVDNEIVLWEPKMKEQSPGEGTADI 281 (369)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~ 281 (369)
.... ........-.....|+++ ...|+.+ ...+.|..+++..... . .
T Consensus 545 dG~~-----------------------~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~------~-~ 594 (791)
T 3m0c_C 545 NGVD-----------------------IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR------K-T 594 (791)
T ss_dssp TSCC-----------------------EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC------E-E
T ss_pred CCCc-----------------------eEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce------E-E
Confidence 6521 111112222456667766 4444444 4566788888865432 0 1
Q ss_pred eeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCC
Q 017553 282 LQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP 324 (369)
Q Consensus 282 ~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~ 324 (369)
+......-.....|++ .+. .++++-...+.|...|..+++
T Consensus 595 v~~~~~~l~~P~glav--~~~-~lYwtD~~~~~I~~~dk~tG~ 634 (791)
T 3m0c_C 595 ILEDEKRLAHPFSLAV--FED-KVFWTDIINEAIFSANRLTGS 634 (791)
T ss_dssp EEECTTTTSSEEEEEE--ETT-EEEEEETTTTEEEEEETTTCC
T ss_pred EecCCCccCCCCEEEE--eCC-EEEEEECCCCEEEEEeCCCCc
Confidence 1111111123345555 333 356666677889888877664
No 278
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.61 E-value=0.00014 Score=59.49 Aligned_cols=230 Identities=8% Similarity=-0.026 Sum_probs=133.3
Q ss_pred cEEEEecCCcEEEEEecCCc--eeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccc-eeec
Q 017553 50 NVFATVGGNRVTVYQCLEGG--VIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHK-SFVG 126 (369)
Q Consensus 50 ~~la~~~~~~v~iw~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~ 126 (369)
.+|+.+....|+..++.... ....+.. ......++|. +.+..++.+-...+.|+.+++....... .+..
T Consensus 5 p~ll~~~~~~I~~i~l~~~~~~~~~~~~~------~~~~~~ld~d--~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~ 76 (318)
T 3sov_A 5 PLLLYANRRDLRLVDATNGKENATIVVGG------LEDAAAVDFV--FSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS 76 (318)
T ss_dssp CEEEEECEEEEEEEETTCTTSCCEEEEEE------EEEEEEEEEE--GGGTEEEEEETTTTEEEEEETTSSSCCCEEEEE
T ss_pred cEEEEEccCeEEEEECCCCceEEEEEecC------CCccEEEEEE--eCCCEEEEEECCCCcEEEEEccCCCceEEEEcC
Confidence 35555555569999987653 2222221 1234456666 6444266666677899999987653322 2222
Q ss_pred cccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEe-eCCcEEEEEcc
Q 017553 127 HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG-MDNTVKIWSMK 205 (369)
Q Consensus 127 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~v~i~d~~ 205 (369)
.-.....+++.+.++.++++-...+.|.++++........+. ........+++.|.++.++++-. ..+.|...++.
T Consensus 77 ~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~---~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d 153 (318)
T 3sov_A 77 GLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFW---QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD 153 (318)
T ss_dssp CCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC---SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT
T ss_pred CCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEe---CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC
Confidence 224567788887456666676677899999987544333332 24456789999984555555542 35678877776
Q ss_pred CceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEE-EEeecCCeEEEecCCCCCCCCCCCcccee
Q 017553 206 EFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFI-LSKSVDNEIVLWEPKMKEQSPGEGTADIL 282 (369)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 282 (369)
... ........-.....++++ +..| ++=...+.|..+|+..... ..+
T Consensus 154 G~~-----------------------~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~-------~~~ 203 (318)
T 3sov_A 154 GSS-----------------------RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR-------QAV 203 (318)
T ss_dssp SCS-----------------------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------EEE
T ss_pred CCC-----------------------eEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce-------EEE
Confidence 511 011111112345677776 4444 4445567899999865321 011
Q ss_pred eeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCc
Q 017553 283 QKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP 325 (369)
Q Consensus 283 ~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~ 325 (369)
. .........+++..+ .++.+-...+.|..++..+++.
T Consensus 204 ~--~~~~~~P~glav~~~---~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 204 V--KGSLPHPFALTLFED---ILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp E--CSCCSCEEEEEEETT---EEEEEETTTTEEEEEETTTCCS
T ss_pred e--cCCCCCceEEEEeCC---EEEEEecCCCeEEEEECCCCCc
Confidence 1 112234456776433 2666677788999999876653
No 279
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.55 E-value=4.4e-05 Score=70.40 Aligned_cols=112 Identities=10% Similarity=0.049 Sum_probs=69.3
Q ss_pred eEEEeeec-CCCccEEEE-eecCC----eEEEEEcCCc-cccc-eeeccccceEEEEecCCCCceEEEEeCC-----CcE
Q 017553 87 YTVSWACN-VDGIPFLVA-GGING----IIRVIDVSNE-KLHK-SFVGHGDSINEIRTQPLKPSLVVSASKD-----ESV 153 (369)
Q Consensus 87 ~~~~~~~~-~~g~~~l~~-~~~dg----~i~vwd~~~~-~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i 153 (369)
..-.+.++ |||+ +|+. ...+| .|+++|+.++ +.+. .+. .....++|+| +++.|+....| ..|
T Consensus 175 ~~~~~~~S~PDG~-~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~Wsp-Dg~~l~y~~~d~~~~~~~v 249 (751)
T 2xe4_A 175 DVMEVKPAPPEHD-LVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGP-DHTSLFYVTKDETLRENKV 249 (751)
T ss_dssp EEEEEEECTTTTC-EEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECS-STTEEEEEEECTTCCEEEE
T ss_pred EEeeeEecCCCCC-EEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEec-CCCEEEEEEECCCCCCCEE
Confidence 34556778 9998 5554 33333 5999999988 6332 122 2245788999 66666655554 358
Q ss_pred EEEEccCCcE--EEEeeccCCCCCcEEEEEecCCCceEEEEEeeC---CcEEEEEccC
Q 017553 154 RLWNVQTGIC--ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD---NTVKIWSMKE 206 (369)
Q Consensus 154 ~vwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---~~v~i~d~~~ 206 (369)
+++++.+++. ...+.. ........+.|+| ++++|+..+.+ ..|.++|+.+
T Consensus 250 ~~~~lgt~~~~~~lv~~~--~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~d~~~ 304 (751)
T 2xe4_A 250 WRHVMGKLQSEDVCLYEE--HNPLFSAFMYKAA-DTNTLCIGSQSPETAEVHLLDLRK 304 (751)
T ss_dssp EEEETTSCGGGCEEEEEC--CCTTCEEEEEECT-TSSEEEEEEECSSCEEEEEEESSS
T ss_pred EEEECCCCchhcEEEEec--CCCceEEEEEECC-CCCEEEEEecCCCCceEEEEECCC
Confidence 8888877642 233321 1334567889999 77766655432 3577778776
No 280
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.55 E-value=0.0002 Score=58.46 Aligned_cols=225 Identities=8% Similarity=-0.078 Sum_probs=131.6
Q ss_pred EEEEeecCCeEEEEEcCCccc-cceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEE-EEeeccCCCCCcE
Q 017553 100 FLVAGGINGIIRVIDVSNEKL-HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICI-LIFAGAGGHRNEV 177 (369)
Q Consensus 100 ~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~v 177 (369)
+|+.+. ...|+..++..... ...+......+..++|.+.++.++.+-...+.|..+++..+... ..+. ..-...
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~---~~l~~p 81 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV---SGLLSP 81 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEE---ECCSCC
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEc---CCCCCc
Confidence 444444 35799999876542 22222233457789999855666666667788999998765321 1222 122345
Q ss_pred EEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEE
Q 017553 178 LSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILS 255 (369)
Q Consensus 178 ~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~ 255 (369)
..+++.+.+++++++-...+.|.++++..... .............++++ +..|+.
T Consensus 82 ~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-----------------------~~l~~~~~~~P~giavdp~~g~ly~ 138 (318)
T 3sov_A 82 DGLACDWLGEKLYWTDSETNRIEVSNLDGSLR-----------------------KVLFWQELDQPRAIALDPSSGFMYW 138 (318)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSCSC-----------------------EEEECSSCSSEEEEEEEGGGTEEEE
T ss_pred cEEEEEcCCCeEEEEECCCCEEEEEECCCCcE-----------------------EEEEeCCCCCccEEEEeCCCCEEEE
Confidence 67888865677777777778899999876211 11111222334566665 344444
Q ss_pred ee--cCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeec
Q 017553 256 KS--VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSH 333 (369)
Q Consensus 256 ~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 333 (369)
+. ..+.|...++..... ..+ ....-.....++++++++ .+.++-+..+.|..+|+.......+. .
T Consensus 139 td~~~~~~I~r~~~dG~~~-------~~~--~~~~l~~Pnglavd~~~~-~lY~aD~~~~~I~~~d~dG~~~~~~~--~- 205 (318)
T 3sov_A 139 TDWGEVPKIERAGMDGSSR-------FII--INSEIYWPNGLTLDYEEQ-KLYWADAKLNFIHKSNLDGTNRQAVV--K- 205 (318)
T ss_dssp EECSSSCEEEEEETTSCSC-------EEE--ECSSCSCEEEEEEETTTT-EEEEEETTTTEEEEEETTSCSCEEEE--C-
T ss_pred EecCCCCEEEEEEcCCCCe-------EEE--EECCCCCccEEEEeccCC-EEEEEECCCCEEEEEcCCCCceEEEe--c-
Confidence 44 257788887764321 011 111123457899999766 35555567889999998765332222 2
Q ss_pred CCCccceEEEEecCCCCEEEEeecCCeEEEEec
Q 017553 334 AQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 366 (369)
Q Consensus 334 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~ 366 (369)
+.......+++.. +.++.+-...+.|..++.
T Consensus 206 -~~~~~P~glav~~-~~lywtd~~~~~V~~~~~ 236 (318)
T 3sov_A 206 -GSLPHPFALTLFE-DILYWTDWSTHSILACNK 236 (318)
T ss_dssp -SCCSCEEEEEEET-TEEEEEETTTTEEEEEET
T ss_pred -CCCCCceEEEEeC-CEEEEEecCCCeEEEEEC
Confidence 2234566777753 345555556677887775
No 281
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.50 E-value=0.00022 Score=60.98 Aligned_cols=155 Identities=10% Similarity=0.081 Sum_probs=94.0
Q ss_pred CeEEEEEee-ccCCCccEEEEecCCcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeec-CC----
Q 017553 35 PLYAVVFNF-IDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI-NG---- 108 (369)
Q Consensus 35 ~v~~~~~s~-~~~~~~~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~-dg---- 108 (369)
....|+++| . .+.++++-..+.|+.+|+..+....... .......+++. ++|+ .|+++.. ++
T Consensus 138 ~P~~lavdp~~---~g~Lyv~d~~~~I~~id~~~~~v~~~~~------~~~~P~~ia~d--~~G~-~lyvad~~~~~~~~ 205 (430)
T 3tc9_A 138 GAVWLSFDPKN---HNHLYLVGEQHPTRLIDFEKEYVSTVYS------GLSKVRTICWT--HEAD-SMIITNDQNNNDRP 205 (430)
T ss_dssp CCCEEEEETTE---EEEEEEEEBTEEEEEEETTTTEEEEEEC------CCSCEEEEEEC--TTSS-EEEEEECCSCTTSE
T ss_pred CCCEEEECCCC---CCeEEEEeCCCcEEEEECCCCEEEEEec------CCCCcceEEEe--CCCC-EEEEEeCCCCcccc
Confidence 457889996 2 2555555444449999976654333322 22345567776 8888 5555543 22
Q ss_pred eEEEEEcCCcccc--ceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCC
Q 017553 109 IIRVIDVSNEKLH--KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSD 186 (369)
Q Consensus 109 ~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 186 (369)
.+..++ ..+... ..+. .......++++|.++.++++-..++.|..++...+........ +.......++|+| +
T Consensus 206 ~v~~~~-~~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~--~~~~~P~gia~~p-d 280 (430)
T 3tc9_A 206 NNYILT-RESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTI--QDSGWEFHIQFHP-S 280 (430)
T ss_dssp EEEEEE-GGGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEEC--SSSSCCEEEEECT-T
T ss_pred eEEEEe-CCCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEc--CCCCcceeEEEcC-C
Confidence 344444 334332 2232 2234577889995566666666778999999987654333221 1224577899999 6
Q ss_pred ce-EEEEEeeCCcEEEEEccC
Q 017553 187 IY-RIASCGMDNTVKIWSMKE 206 (369)
Q Consensus 187 ~~-~l~~~~~d~~v~i~d~~~ 206 (369)
++ ++++-...+.|..++...
T Consensus 281 G~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 281 GNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp SSEEEEEETTTTEEEEEEEET
T ss_pred CCEEEEEECCCCEEEEEeCCc
Confidence 66 566666678899988764
No 282
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.50 E-value=0.00019 Score=66.29 Aligned_cols=153 Identities=10% Similarity=-0.006 Sum_probs=91.3
Q ss_pred CeEEEEEe-eccCCCccEEEEecC----Cc--EEEEEecCC-ceeEE-EeeeccCCcccceeEEEeeecCCCccEEEEee
Q 017553 35 PLYAVVFN-FIDSRYFNVFATVGG----NR--VTVYQCLEG-GVIAA-LQSYVDEDKEESFYTVSWACNVDGIPFLVAGG 105 (369)
Q Consensus 35 ~v~~~~~s-~~~~~~~~~la~~~~----~~--v~iw~~~~~-~~~~~-~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~ 105 (369)
.+...+|| | +|++||.+.. +. |+++|+.++ +.+.. +. .....++|+ |||+ .|+...
T Consensus 175 ~~~~~~~S~P----DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~--------~~~~~~~Ws--pDg~-~l~y~~ 239 (751)
T 2xe4_A 175 DVMEVKPAPP----EHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS--------GTNGEIVWG--PDHT-SLFYVT 239 (751)
T ss_dssp EEEEEEECTT----TTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE--------EECSCCEEC--SSTT-EEEEEE
T ss_pred EEeeeEecCC----CCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc--------CceeeEEEe--cCCC-EEEEEE
Confidence 67889999 8 6888885432 22 999998887 53211 11 112346777 9998 555444
Q ss_pred cC-----CeEEEEEcCCcccc--ceee-ccccceEEEEecCCCCceEEEEe---CCCcEEEEEccCCc-EE--EEeeccC
Q 017553 106 IN-----GIIRVIDVSNEKLH--KSFV-GHGDSINEIRTQPLKPSLVVSAS---KDESVRLWNVQTGI-CI--LIFAGAG 171 (369)
Q Consensus 106 ~d-----g~i~vwd~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~~l~s~~---~dg~i~vwd~~~~~-~~--~~~~~~~ 171 (369)
.+ ..|+++++.++... ..+. ........+.|+| +++.|+..+ ....|.++|+.++. .. ..+..
T Consensus 240 ~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~-- 316 (751)
T 2xe4_A 240 KDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA-DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRP-- 316 (751)
T ss_dssp ECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT-TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSC--
T ss_pred ECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECC-CCCEEEEEecCCCCceEEEEECCCCCCCceeEEeec--
Confidence 43 36888888776432 2222 2233466889999 777666554 23468888988752 12 33321
Q ss_pred CCCCcEEEEEecCCCceEEEEEeeC--C--cEEEEEccC
Q 017553 172 GHRNEVLSVDFHPSDIYRIASCGMD--N--TVKIWSMKE 206 (369)
Q Consensus 172 ~~~~~v~~~~~~~~~~~~l~~~~~d--~--~v~i~d~~~ 206 (369)
.......++.|+. ++.+++....+ + .|..+|+.+
T Consensus 317 ~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 317 REKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp CCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTS
T ss_pred CCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 3445566777664 66666665544 3 455556543
No 283
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.43 E-value=3.7e-06 Score=76.52 Aligned_cols=229 Identities=6% Similarity=-0.052 Sum_probs=124.3
Q ss_pred EEEEecCCcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCC----ccccceeec
Q 017553 51 VFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN----EKLHKSFVG 126 (369)
Q Consensus 51 ~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~----~~~~~~~~~ 126 (369)
+|+.+....|+..++........+.. ...+..++|. +.+..++++-...+.|+.+++.. ......+..
T Consensus 379 ~ll~~~~~~I~~id~~~~~~~~~~~~------~~~p~gla~d--~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~ 450 (699)
T 1n7d_A 379 YLFFTNRHEVRKMTLDRSEYTSLIPN------LRNVVALDTE--VASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR 450 (699)
T ss_dssp CBCCCCTTC-CEECTTSCCEECCSCC------CTTCCCCEEE--TTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCS
T ss_pred eEEecCccceEEEeCCCCcceeeecc------CcceEEEccc--cccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeC
Confidence 34444445577778666554333332 2234457776 75552445545668899999875 222222222
Q ss_pred cccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeC-CcEEEEEcc
Q 017553 127 HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD-NTVKIWSMK 205 (369)
Q Consensus 127 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-~~v~i~d~~ 205 (369)
.......|++.+.++.++++-...+.|.++++........+. ........++++|.++.++++-... +.|..+++.
T Consensus 451 ~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~---~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~d 527 (699)
T 1n7d_A 451 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR---EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN 527 (699)
T ss_dssp CC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECC---CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSS
T ss_pred CCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEe---CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCC
Confidence 223456788876456666666667899999987554433332 1234467889998555555544333 677776665
Q ss_pred CceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee---CcEEEEeecCCeEEEecCCCCCCCCCCCcccee
Q 017553 206 EFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADIL 282 (369)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 282 (369)
.... .......-.....|+++ +.++++-...+.|..+++...... .+
T Consensus 528 G~~~-----------------------~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~-------~~ 577 (699)
T 1n7d_A 528 GVDI-----------------------YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-------TI 577 (699)
T ss_dssp SCCC-----------------------CEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCE-------EE
T ss_pred CCCe-----------------------eEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceE-------EE
Confidence 4110 00111112334567775 344555556778999998653210 11
Q ss_pred eeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCC
Q 017553 283 QKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 323 (369)
Q Consensus 283 ~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~ 323 (369)
............+++..+ .++++....+.|..++..++
T Consensus 578 ~~~~~~~~~P~glavd~~---~lywtd~~~~~V~~~d~~~G 615 (699)
T 1n7d_A 578 LEDEKRLAHPFSLAVFED---KVFWTDIINEAIFSANRLTG 615 (699)
T ss_dssp CCCSSSCSSCCCCEEETT---EEEEECSTTTCEEEEETTTE
T ss_pred EecCCcCCCceEeEEECC---EEEEEeCCCCeEEEEEccCC
Confidence 111111122344555443 36666677889999998766
No 284
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.42 E-value=0.00094 Score=61.47 Aligned_cols=225 Identities=8% Similarity=-0.097 Sum_probs=127.7
Q ss_pred EEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCC----cEEEEeeccCCCCC
Q 017553 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG----ICILIFAGAGGHRN 175 (369)
Q Consensus 100 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~ 175 (369)
+|+... ...|+..++........+. ....+..|+|.+.++.++++-...+.|+.+++... .....+. ....
T Consensus 397 ~Ll~an-~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~---~~l~ 471 (791)
T 3m0c_C 397 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS---RDIQ 471 (791)
T ss_dssp EEEEEC-BSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC---SSCS
T ss_pred cccccc-ccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEe---cCCC
Confidence 444443 3467777876554333333 44567899999855566666666788998988653 2222232 2334
Q ss_pred cEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEE
Q 017553 176 EVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFI 253 (369)
Q Consensus 176 ~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l 253 (369)
....|++.+.+++++++-...+.|.+.++..... ...+.........|+++ ..+|
T Consensus 472 ~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~-----------------------~~l~~~~l~~P~gIaVDp~~g~L 528 (791)
T 3m0c_C 472 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-----------------------KTLFRENGSKPRAIVVDPVHGFM 528 (791)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE-----------------------EEEEECTTCCEEEEEEETTTTEE
T ss_pred CcceeeeeecCCcEEEEecCCCeEEEEeCCCCeE-----------------------EEEEeCCCCCcceEEEecCCCCE
Confidence 5667888874667777777788999999876211 11111223345677776 3444
Q ss_pred EEeec--CCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEe
Q 017553 254 LSKSV--DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARL 331 (369)
Q Consensus 254 ~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 331 (369)
+.... .+.|...++.... ........-.....|++.+... .+.++-...+.|..+++.......+..-
T Consensus 529 YwtD~g~~~~I~~~~~dG~~---------~~~lv~~~l~~P~GLavD~~~~-~LYwaD~~~~~I~~~d~dG~~~~~v~~~ 598 (791)
T 3m0c_C 529 YWTDWGTPAKIKKGGLNGVD---------IYSLVTENIQWPNGITLDLLSG-RLYWVDSKLHSISSIDVNGGNRKTILED 598 (791)
T ss_dssp EEEECSSSCEEEEEETTSCC---------EEEEECSSCSCEEEEEEETTTT-EEEEEETTTTEEEEEETTSCSCEEEEEC
T ss_pred EEecCCCCCeEEEEecCCCc---------eEEEEeCCCCCceEEEEecCCC-eEEEEeCCCCcEEEEecCCCceEEEecC
Confidence 44432 2678888876543 1111222224577899997766 3444455678899999976643333221
Q ss_pred ecCCCccceEEEEecCCCCEEEEeecCCeEEEEe
Q 017553 332 SHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 365 (369)
Q Consensus 332 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~ 365 (369)
. .......+|++..+ .++++-...+.|...|
T Consensus 599 ~--~~l~~P~glav~~~-~lYwtD~~~~~I~~~d 629 (791)
T 3m0c_C 599 E--KRLAHPFSLAVFED-KVFWTDIINEAIFSAN 629 (791)
T ss_dssp T--TTTSSEEEEEEETT-EEEEEETTTTEEEEEE
T ss_pred C--CccCCCCEEEEeCC-EEEEEECCCCEEEEEe
Confidence 1 22234456666433 3444444556666655
No 285
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.42 E-value=0.00042 Score=59.26 Aligned_cols=246 Identities=10% Similarity=-0.011 Sum_probs=129.3
Q ss_pred eEEEeeecC-CCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeC-CC----cEEEEEccC
Q 017553 87 YTVSWACNV-DGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASK-DE----SVRLWNVQT 160 (369)
Q Consensus 87 ~~~~~~~~~-~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-dg----~i~vwd~~~ 160 (369)
..+++. | ++. .|+++...+.|+.+|+..++.. .+.........|+|++ +++.|+.+.. ++ .+.+.+. .
T Consensus 140 ~~lavd--p~~~g-~Lyv~d~~~~I~~id~~~~~v~-~~~~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~-~ 213 (430)
T 3tc9_A 140 VWLSFD--PKNHN-HLYLVGEQHPTRLIDFEKEYVS-TVYSGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTR-E 213 (430)
T ss_dssp CEEEEE--TTEEE-EEEEEEBTEEEEEEETTTTEEE-EEECCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEG-G
T ss_pred CEEEEC--CCCCC-eEEEEeCCCcEEEEECCCCEEE-EEecCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeC-C
Confidence 446666 6 344 4666555588999998765543 3333445688999999 7774544443 22 2333443 3
Q ss_pred CcEE--EEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeecc
Q 017553 161 GICI--LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV 238 (369)
Q Consensus 161 ~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (369)
+... ..+. .......++++|.++.++++-..++.|..++....... .+....
T Consensus 214 g~~~~~~~l~----~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~---------------------~~~~~~- 267 (430)
T 3tc9_A 214 SGFKVITELT----KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT---------------------PLFTIQ- 267 (430)
T ss_dssp GTSCSEEEEE----ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE---------------------EEEECS-
T ss_pred Cceeeeeeec----cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE---------------------EEEEcC-
Confidence 3221 2222 12234678899856676776667788999998763210 011111
Q ss_pred CCCceeeeeee--CcE-EEEeecCCeEEEecCCCCCCCCCCCccceeeec------------cCCCCCee-EEEEeec--
Q 017553 239 HSNYVDCNRWL--GDF-ILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY------------PVPECDIW-FIKFSCD-- 300 (369)
Q Consensus 239 ~~~~v~~~~~~--~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~------------~~~~~~i~-~~~~s~~-- 300 (369)
.......++++ +++ +++-...+.|..++......... ....+... ...-.... .++..++
T Consensus 268 ~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~--~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y 345 (430)
T 3tc9_A 268 DSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLT--TPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAY 345 (430)
T ss_dssp SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEC--CCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGG
T ss_pred CCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCccccccc--ceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccc
Confidence 11334567776 664 44445677899987653210000 00000000 00001122 3444321
Q ss_pred ----CCccEEEEecCCCeEEEEEccCCCceeEEEee---cCC----------CccceEEEEecC-CCCEEEEeecCCeEE
Q 017553 301 ----FHYNAAAIGNREGKIFVWELQSSPPVLIARLS---HAQ----------SKSPIRQTAMSY-DGSTILSCCEDGAIW 362 (369)
Q Consensus 301 ----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~----------~~~~v~~~~~s~-~~~~l~s~~~dg~i~ 362 (369)
..+.+.++-...++|+.++. ++....+.... ..+ .-.....++++| ++.++++-..++.|+
T Consensus 346 ~~~D~~g~lyvaD~~n~~I~~i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr 424 (430)
T 3tc9_A 346 KGSSDEYDFYFCDRENHCIRILTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIR 424 (430)
T ss_dssp TTSSCCEEEEEEEGGGTEEEEECT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEE
T ss_pred cccCCCCeEEEEECCCcEEEEECC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEE
Confidence 22235555566788888883 34211111110 001 012578999999 466666666778898
Q ss_pred EEecC
Q 017553 363 RWDAI 367 (369)
Q Consensus 363 vw~~~ 367 (369)
.++++
T Consensus 425 ~i~~e 429 (430)
T 3tc9_A 425 KIGYE 429 (430)
T ss_dssp EEEEC
T ss_pred EEccC
Confidence 88765
No 286
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.41 E-value=0.00064 Score=58.51 Aligned_cols=162 Identities=8% Similarity=0.069 Sum_probs=96.2
Q ss_pred CeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEe-------eecCCCccEEEEeec
Q 017553 35 PLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSW-------ACNVDGIPFLVAGGI 106 (369)
Q Consensus 35 ~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~~g~~~l~~~~~ 106 (369)
....|+|+|.+ .++++++..... |++.|+.++........ .. ..-.....++| . ++|. .|+++..
T Consensus 140 ~p~~la~dp~~--~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~-~~-~~~~~p~~ia~~~~~~~~d--~~G~-~lyvad~ 212 (496)
T 3kya_A 140 DNGRLAFDPLN--KDHLYICYDGHKAIQLIDLKNRMLSSPLNI-NT-IPTNRIRSIAFNKKIEGYA--DEAE-YMIVAID 212 (496)
T ss_dssp SEEEEEEETTE--EEEEEEEEETEEEEEEEETTTTEEEEEECC-TT-SSCSBEEEEEECCCBTTTB--CTTC-EEEEEEC
T ss_pred CCCEEEEccCC--CCEEEEEECCCCeEEEEECCCCEEEEEEcc-Cc-cccCCCcEEEEeecccccC--CCCC-EEEEEeC
Confidence 35689999721 255565555444 88899766555443332 11 12234666777 6 8888 5655544
Q ss_pred CC-------eEEEEEcCC-cccc-----ceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEcc-------CCcE---
Q 017553 107 NG-------IIRVIDVSN-EKLH-----KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ-------TGIC--- 163 (369)
Q Consensus 107 dg-------~i~vwd~~~-~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~-------~~~~--- 163 (369)
.+ .|.+++... +... ..+... .....++++|.++.++++-..++.|..+|+. ++..
T Consensus 213 ~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp 291 (496)
T 3kya_A 213 YDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDP 291 (496)
T ss_dssp CCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCC
T ss_pred CCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecc
Confidence 43 366666333 2322 223222 2346788899666667777788899999997 5543
Q ss_pred --------EEEeeccCCCCCcEEEEEecCCCce-EEEEEeeCCcEEEEEccC
Q 017553 164 --------ILIFAGAGGHRNEVLSVDFHPSDIY-RIASCGMDNTVKIWSMKE 206 (369)
Q Consensus 164 --------~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~d~~v~i~d~~~ 206 (369)
...+... +.......++|+| +++ ++++-.....|+.++...
T Consensus 292 ~~~~~~g~~~~l~~~-~~~~~p~~ia~~p-~G~~lYvaD~~~h~I~kid~dg 341 (496)
T 3kya_A 292 IVKNNPNTFKQLFTI-ADPSWEFQIFIHP-TGKYAYFGVINNHYFMRSDYDE 341 (496)
T ss_dssp BGGGCTTTEEEEEEC-SSSSCCEEEEECT-TSSEEEEEETTTTEEEEEEEET
T ss_pred cccccccccceeEec-CCCCCceEEEEcC-CCCEEEEEeCCCCEEEEEecCC
Confidence 1222111 2344568999999 666 455556677888877654
No 287
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=98.37 E-value=0.00016 Score=58.62 Aligned_cols=226 Identities=12% Similarity=0.074 Sum_probs=114.4
Q ss_pred EEEEee-cC-----CeEEEEEcCCccc--cceeeccccceEEEEecCCCCceEEEEeCC-----CcEEEEEccCCc---E
Q 017553 100 FLVAGG-IN-----GIIRVIDVSNEKL--HKSFVGHGDSINEIRTQPLKPSLVVSASKD-----ESVRLWNVQTGI---C 163 (369)
Q Consensus 100 ~l~~~~-~d-----g~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~---~ 163 (369)
+++.|+ .+ ..+.+||+.+.+. +..+.........+.. ++.+++.|+.+ ..+.+||+.+++ -
T Consensus 17 i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W 93 (301)
T 2vpj_A 17 LLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL---HDRIYVIGGYDGRSRLSSVECLDYTADEDGVW 93 (301)
T ss_dssp EEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTCCTTCCC
T ss_pred EEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEE---CCEEEEEcCCCCCccCceEEEEECCCCCCCee
Confidence 666666 33 3688899876642 2222211111122222 56777777765 468999998776 3
Q ss_pred EEEeeccCCCCCcEEEEEecCCCceEEEEEeeCC-----cEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeecc
Q 017553 164 ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN-----TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV 238 (369)
Q Consensus 164 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-----~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (369)
... ......... .+++.. ++.+++.|+.++ .+.+||+.+..-... .....
T Consensus 94 ~~~-~~~p~~r~~-~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~---------------------~~~p~ 148 (301)
T 2vpj_A 94 YSV-APMNVRRGL-AGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSML---------------------GDMQT 148 (301)
T ss_dssp EEE-CCCSSCCBS-CEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEE---------------------EECSS
T ss_pred EEC-CCCCCCccc-eeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEEC---------------------CCCCC
Confidence 332 211111111 122232 567788877543 577888776331111 01111
Q ss_pred CCCceeeeeeeCcEEEEeecC-----CeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCC-
Q 017553 239 HSNYVDCNRWLGDFILSKSVD-----NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE- 312 (369)
Q Consensus 239 ~~~~v~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~d- 312 (369)
....-.++.+++..++.|+.+ ..+.+||+.+.+ ...+..++...... + +...+++ +++.|+.+
T Consensus 149 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~-------W~~~~~~p~~r~~~-~-~~~~~~~--i~v~GG~~~ 217 (301)
T 2vpj_A 149 AREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGH-------WTNVTPMATKRSGA-G-VALLNDH--IYVVGGFDG 217 (301)
T ss_dssp CCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTE-------EEEECCCSSCCBSC-E-EEEETTE--EEEECCBCS
T ss_pred CcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCc-------EEeCCCCCcccccc-e-EEEECCE--EEEEeCCCC
Confidence 111112223346677777654 458888887653 11222222221111 1 2223443 66666653
Q ss_pred ----CeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecC-----CeEEEEecCC
Q 017553 313 ----GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCED-----GAIWRWDAIP 368 (369)
Q Consensus 313 ----g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-----g~i~vw~~~~ 368 (369)
..+.+||+.+.+...+..+. ........+.+ ++++++.|+.+ ..|.+||+++
T Consensus 218 ~~~~~~v~~yd~~~~~W~~~~~~p--~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~ 278 (301)
T 2vpj_A 218 TAHLSSVEAYNIRTDSWTTVTSMT--TPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPII 278 (301)
T ss_dssp SSBCCCEEEEETTTTEEEEECCCS--SCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTT
T ss_pred CcccceEEEEeCCCCcEEECCCCC--CcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCC
Confidence 56999999987544443333 11122222332 67788888765 3578888764
No 288
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=98.32 E-value=0.00064 Score=55.11 Aligned_cols=237 Identities=11% Similarity=0.066 Sum_probs=118.9
Q ss_pred ccEEEEec-CC------cEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecC-----CeEEEEEcC
Q 017553 49 FNVFATVG-GN------RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN-----GIIRVIDVS 116 (369)
Q Consensus 49 ~~~la~~~-~~------~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~d-----g~i~vwd~~ 116 (369)
+.+++.|+ .+ .+.+||+.+.+ ...+..... .... .++ .. .++. +++.|+.+ ..+.+||+.
T Consensus 15 ~~i~~~GG~~~~~~~~~~~~~~d~~~~~-W~~~~~~p~--~r~~-~~~-~~--~~~~-l~v~GG~~~~~~~~~~~~~d~~ 86 (301)
T 2vpj_A 15 EVLLVVGGFGSQQSPIDVVEKYDPKTQE-WSFLPSITR--KRRY-VAS-VS--LHDR-IYVIGGYDGRSRLSSVECLDYT 86 (301)
T ss_dssp EEEEEECCEETTTEECCCEEEEETTTTE-EEECCCCSS--CCBS-CEE-EE--ETTE-EEEECCBCSSCBCCCEEEEETT
T ss_pred CEEEEEeCccCCCcceeEEEEEcCCCCe-EEeCCCCCh--hhcc-ccE-EE--ECCE-EEEEcCCCCCccCceEEEEECC
Confidence 46677776 22 38889976654 333332211 1111 112 22 3455 77777754 468999987
Q ss_pred Ccc---c--cceeeccccceEEEEecCCCCceEEEEeCC-----CcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCC
Q 017553 117 NEK---L--HKSFVGHGDSINEIRTQPLKPSLVVSASKD-----ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSD 186 (369)
Q Consensus 117 ~~~---~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 186 (369)
+.+ . +..+......-..+.+ ++.+++.|+.+ ..+.+||+.+++-...-. ....... .+++.. +
T Consensus 87 ~~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~-~p~~r~~-~~~~~~--~ 159 (301)
T 2vpj_A 87 ADEDGVWYSVAPMNVRRGLAGATTL---GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGD-MQTAREG-AGLVVA--S 159 (301)
T ss_dssp CCTTCCCEEECCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEE-CSSCCBS-CEEEEE--T
T ss_pred CCCCCeeEECCCCCCCccceeEEEE---CCEEEEEcccCCCcccceEEEEcCCCCeEEECCC-CCCCccc-ceEEEE--C
Confidence 765 2 2122211111122222 46677777654 358899988776443322 1111111 122232 5
Q ss_pred ceEEEEEeeC-----CcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeeeCcEEEEeecC--
Q 017553 187 IYRIASCGMD-----NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVD-- 259 (369)
Q Consensus 187 ~~~l~~~~~d-----~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d-- 259 (369)
+.+++.|+.+ ..+.+||+.+..-.... .+........++.+++.+++.|+.+
T Consensus 160 ~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~---------------------~~p~~r~~~~~~~~~~~i~v~GG~~~~ 218 (301)
T 2vpj_A 160 GVIYCLGGYDGLNILNSVEKYDPHTGHWTNVT---------------------PMATKRSGAGVALLNDHIYVVGGFDGT 218 (301)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTTTEEEEEC---------------------CCSSCCBSCEEEEETTEEEEECCBCSS
T ss_pred CEEEEECCCCCCcccceEEEEeCCCCcEEeCC---------------------CCCcccccceEEEECCEEEEEeCCCCC
Confidence 6778888765 35888888774211110 0000111112233346677777764
Q ss_pred ---CeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCC-----CeEEEEEccCCCceeEEEe
Q 017553 260 ---NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE-----GKIFVWELQSSPPVLIARL 331 (369)
Q Consensus 260 ---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~ 331 (369)
..+.+||+.+.+ ...+..++...... .+...+++ +++.|+.+ ..+.+||+.+.+...+..+
T Consensus 219 ~~~~~v~~yd~~~~~-------W~~~~~~p~~r~~~--~~~~~~~~--i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 287 (301)
T 2vpj_A 219 AHLSSVEAYNIRTDS-------WTTVTSMTTPRCYV--GATVLRGR--LYAIAGYDGNSLLSSIECYDPIIDSWEVVTSM 287 (301)
T ss_dssp SBCCCEEEEETTTTE-------EEEECCCSSCCBSC--EEEEETTE--EEEECCBCSSSBEEEEEEEETTTTEEEEEEEE
T ss_pred cccceEEEEeCCCCc-------EEECCCCCCcccce--eEEEECCE--EEEEcCcCCCcccccEEEEcCCCCeEEEcCCC
Confidence 468899987653 11222222221111 22223443 66666654 4688999988765554444
Q ss_pred e
Q 017553 332 S 332 (369)
Q Consensus 332 ~ 332 (369)
.
T Consensus 288 ~ 288 (301)
T 2vpj_A 288 G 288 (301)
T ss_dssp E
T ss_pred C
Confidence 3
No 289
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=98.27 E-value=0.0005 Score=55.76 Aligned_cols=226 Identities=12% Similarity=0.134 Sum_probs=112.7
Q ss_pred EEEEeecC----CeEEEEEcCCcccc--ceeeccccceEEEEecCCCCceEEEEeCC-----CcEEEEEccCCcEEEEee
Q 017553 100 FLVAGGIN----GIIRVIDVSNEKLH--KSFVGHGDSINEIRTQPLKPSLVVSASKD-----ESVRLWNVQTGICILIFA 168 (369)
Q Consensus 100 ~l~~~~~d----g~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~ 168 (369)
+++.|+.+ ..+.+||+.+.+-. ..+......-..+.+ ++.+++.|+.+ ..+.+||..+.+-... .
T Consensus 18 i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~-~ 93 (302)
T 2xn4_A 18 MVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM---AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV-A 93 (302)
T ss_dssp EEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEESCBCSSSBCCCEEEEETTTTEEEEE-C
T ss_pred EEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE---CCEEEEEeCcCCCccccceEEECCCCCceeeC-C
Confidence 66666643 35788888766421 111111111112222 56777777754 3588999887754332 2
Q ss_pred ccCCCCCcEEEEEecCCCceEEEEEeeCC-----cEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCce
Q 017553 169 GAGGHRNEVLSVDFHPSDIYRIASCGMDN-----TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV 243 (369)
Q Consensus 169 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-----~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 243 (369)
........ .+++.. ++.+++.|+.++ .+.+||+.+..-.... .+.......
T Consensus 94 ~~p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~---------------------~~p~~r~~~ 149 (302)
T 2xn4_A 94 NMRDRRST-LGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVA---------------------PMNTRRSSV 149 (302)
T ss_dssp CCSSCCBS-CEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEEC---------------------CCSSCCBSC
T ss_pred CCCccccc-eEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecC---------------------CCCCcccCc
Confidence 11111111 222332 567888887664 4677777763211100 001111111
Q ss_pred eeeeeeCcEEEEeecC-------CeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCC----
Q 017553 244 DCNRWLGDFILSKSVD-------NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE---- 312 (369)
Q Consensus 244 ~~~~~~~~~l~~~~~d-------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~d---- 312 (369)
.++.+.+..++.|+.+ ..+.+||+.+.+ ...+..++...... +++ ..+++ +++.|+.+
T Consensus 150 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~-------W~~~~~~p~~r~~~-~~~-~~~~~--iyv~GG~~~~~~ 218 (302)
T 2xn4_A 150 GVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNE-------WTYIAEMSTRRSGA-GVG-VLNNL--LYAVGGHDGPLV 218 (302)
T ss_dssp EEEEETTEEEEECCEETTTTEECCCEEEEETTTTE-------EEEECCCSSCCBSC-EEE-EETTE--EEEECCBSSSSB
T ss_pred eEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCc-------EEECCCCccccccc-cEE-EECCE--EEEECCCCCCcc
Confidence 2223346666666643 358888887653 11222222221111 222 22443 66666643
Q ss_pred -CeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCC-----eEEEEecCC
Q 017553 313 -GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDG-----AIWRWDAIP 368 (369)
Q Consensus 313 -g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg-----~i~vw~~~~ 368 (369)
..+.+||+.+.+...+..+.. ....-..+. .++++++.|+.++ .+.+||+.+
T Consensus 219 ~~~~~~yd~~~~~W~~~~~~~~--~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~ 276 (302)
T 2xn4_A 219 RKSVEVYDPTTNAWRQVADMNM--CRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTT 276 (302)
T ss_dssp CCCEEEEETTTTEEEEECCCSS--CCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTT
T ss_pred cceEEEEeCCCCCEeeCCCCCC--ccccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCC
Confidence 469999998875444433331 111122222 2677888887654 488888765
No 290
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.27 E-value=1.1e-05 Score=73.59 Aligned_cols=220 Identities=7% Similarity=-0.119 Sum_probs=118.3
Q ss_pred CCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccC----CcEEEEeeccCCCCCcEEEEEe
Q 017553 107 NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT----GICILIFAGAGGHRNEVLSVDF 182 (369)
Q Consensus 107 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~----~~~~~~~~~~~~~~~~v~~~~~ 182 (369)
.+.|+..++...+....+.. ...+..|+|.+.++.++++-...+.|+.+++.. ......+. ........|++
T Consensus 385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~---~~~~~P~glav 460 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS---RDIQAPDGLAV 460 (699)
T ss_dssp TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCC---SCC--CCCEEC
T ss_pred ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEe---CCCCCcceEEE
Confidence 35788888776554443332 345678999984444455545668899999875 12111111 11223456788
Q ss_pred cCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEee-c-
Q 017553 183 HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS-V- 258 (369)
Q Consensus 183 ~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~-~- 258 (369)
.+.+++++++-...+.|.++++...... ..+.........++++ +.+|+.+. .
T Consensus 461 D~~~g~LY~tD~~~~~I~v~d~dg~~~~-----------------------~l~~~~~~~P~giavDp~~g~ly~td~~~ 517 (699)
T 1n7d_A 461 DWIHSNIYWTDSVLGTVSVADTKGVKRK-----------------------TLFREQGSKPRAIVVDPVHGFMYWTDWGT 517 (699)
T ss_dssp CCSSSBCEECCTTTSCEEEEBSSSCCEE-----------------------EECCCSSCCCCCEECCSSSSCCEECCCSS
T ss_pred EeeCCcEEEEeccCCeEEEEecCCCceE-----------------------EEEeCCCCCcceEEEccCCCcEEEcccCC
Confidence 7546676666666788999888762110 0111111223444554 33333333 2
Q ss_pred CCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCcc
Q 017553 259 DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKS 338 (369)
Q Consensus 259 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 338 (369)
.+.|..+++...... .+. ...-.....|+|+|+++ .++++-...+.|..+++.......+.... ....
T Consensus 518 ~~~I~~~~~dG~~~~-------~l~--~~~l~~PnGlavd~~~~-~LY~aD~~~~~I~~~d~dG~~~~~~~~~~--~~~~ 585 (699)
T 1n7d_A 518 PAKIKKGGLNGVDIY-------SLV--TENIQWPNGITLDLLSG-RLYWVDSKLHSISSIDVNGGNRKTILEDE--KRLA 585 (699)
T ss_dssp SCCEEBCCSSSCCCC-------EES--CSSCSSCCCEEECTTTC-CEEEEETTTTEEEEECSSSSCCEEECCCS--SSCS
T ss_pred CCeEEEEeCCCCCee-------EEE--eCCCCCccEEEEeccCC-EEEEEecCCCeEEEEccCCCceEEEEecC--CcCC
Confidence 267777776543210 111 11123456799999876 35555567789999999765332222111 1122
Q ss_pred ceEEEEecCCCCEEEEeecCCeEEEEec
Q 017553 339 PIRQTAMSYDGSTILSCCEDGAIWRWDA 366 (369)
Q Consensus 339 ~v~~~~~s~~~~~l~s~~~dg~i~vw~~ 366 (369)
....|++..+ .++++....+.|..++.
T Consensus 586 ~P~glavd~~-~lywtd~~~~~V~~~d~ 612 (699)
T 1n7d_A 586 HPFSLAVFED-KVFWTDIINEAIFSANR 612 (699)
T ss_dssp SCCCCEEETT-EEEEECSTTTCEEEEET
T ss_pred CceEeEEECC-EEEEEeCCCCeEEEEEc
Confidence 3445666544 45555556678888874
No 291
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.27 E-value=0.0011 Score=54.04 Aligned_cols=200 Identities=13% Similarity=0.209 Sum_probs=117.6
Q ss_pred CceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCc----e---EEEEEee---CCcEEEEEccCceee
Q 017553 141 PSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDI----Y---RIASCGM---DNTVKIWSMKEFWTY 210 (369)
Q Consensus 141 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~---~l~~~~~---d~~v~i~d~~~~~~~ 210 (369)
..+++.....+-+.+||+ +|+.++.+. . +.++.+..-| +- . ++++... +++|.+|++......
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~----~-g~~nnVD~r~-~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~ 112 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYN----T-GKLNNVDIRY-DFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT 112 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEEC----C-SCEEEEEEEE-EEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEcc----C-CCcccEEEec-ccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc
Confidence 446777777889999999 888888875 2 5677777665 21 1 2333333 478999988531110
Q ss_pred eeeeeeccCCCCCCCCceeecceeeeccCCCceeeeee--e---Cc-EEEEeecCCeEEEecCCCCCCCCCCCccceeee
Q 017553 211 VEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW--L---GD-FILSKSVDNEIVLWEPKMKEQSPGEGTADILQK 284 (369)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~---~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 284 (369)
+...-. . ..++ ..-...+..+++ + +. ++++...+|.+..|++...... ....+.+++
T Consensus 113 l~~i~~----~--------~~pv---~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g--~~~~~lVR~ 175 (355)
T 3amr_A 113 LQSMTD----P--------DHPI---ATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNG--YISGKKVRA 175 (355)
T ss_dssp EEECSC----T--------TSCE---ECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTS--CEEEEEEEE
T ss_pred eeeccc----c--------ccCc---CCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCC--cccceEEEE
Confidence 100000 0 0000 001134444555 3 33 6888888999999998532110 012235666
Q ss_pred ccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCC---ceeEEEeecCCCccceEEEEe--cCCCC-EEEEee-c
Q 017553 285 YPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP---PVLIARLSHAQSKSPIRQTAM--SYDGS-TILSCC-E 357 (369)
Q Consensus 285 ~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~~~~v~~~~~--s~~~~-~l~s~~-~ 357 (369)
+... ..+..+...+... .|+.+-++..|..|+.+... ...+..+....-...+..|++ .++++ +|++++ .
T Consensus 176 f~lg-sq~EgcvvDd~~g--~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG 252 (355)
T 3amr_A 176 FKMN-SQTEGMAADDEYG--RLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQG 252 (355)
T ss_dssp EECS-SCEEEEEEETTTT--EEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGG
T ss_pred ecCC-CCcceEEEcCCCC--eEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCC
Confidence 6654 4677888887765 78888888777777755321 234444432223346888888 45555 566555 6
Q ss_pred CCeEEEEecC
Q 017553 358 DGAIWRWDAI 367 (369)
Q Consensus 358 dg~i~vw~~~ 367 (369)
+....|||.+
T Consensus 253 ~~s~~Vydr~ 262 (355)
T 3amr_A 253 NSSYAIYDRQ 262 (355)
T ss_dssp GTEEEEEESS
T ss_pred CCEEEEEECC
Confidence 7789999985
No 292
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.26 E-value=0.0022 Score=57.60 Aligned_cols=230 Identities=7% Similarity=-0.119 Sum_probs=135.9
Q ss_pred ccEEEEecCCcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccc
Q 017553 49 FNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHG 128 (369)
Q Consensus 49 ~~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 128 (369)
..+|+.+....|+..++........+.. ..-.....++|. +.+..++.+-..++.|+.++++.......+....
T Consensus 6 ~~~Ll~s~~~~I~~i~l~~~~~~~~~~~----~~~~~~~~l~~d--~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~ 79 (628)
T 4a0p_A 6 EAFLLFSRRADIRRISLETNNNNVAIPL----TGVKEASALDFD--VTDNRIYWTDISLKTISRAFMNGSALEHVVEFGL 79 (628)
T ss_dssp CCEEEEEETTEEEEEESSCTTCEEECCC----CSCSCEEEEEEE--TTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC
T ss_pred CcEEEEEeCCcEEEEECCCCCcceEEEc----CCCCceEEEEEE--CCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCC
Confidence 3566666666699999876554333221 112345566666 7555356666678999999986543322232222
Q ss_pred cceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEE-eeCCcEEEEEccCc
Q 017553 129 DSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASC-GMDNTVKIWSMKEF 207 (369)
Q Consensus 129 ~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~d~~v~i~d~~~~ 207 (369)
.....|++.+..+++.++-...+.|.+.++........+. ..-.....+++.|..+.++++- +..+.|...++...
T Consensus 80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~---~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~ 156 (628)
T 4a0p_A 80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVW---KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGS 156 (628)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEEC---SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEe---CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCC
Confidence 4567888887456666776677899999987554333332 2345678999998566666554 22467777777652
Q ss_pred eeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEE-EeecCCeEEEecCCCCCCCCCCCccceeee
Q 017553 208 WTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFIL-SKSVDNEIVLWEPKMKEQSPGEGTADILQK 284 (369)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 284 (369)
. ...+...-.....++++ ++.|+ +-...+.|..+|+..... ..+.
T Consensus 157 ~------------------------~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-------~v~~- 204 (628)
T 4a0p_A 157 E------------------------RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-------EVIA- 204 (628)
T ss_dssp S------------------------CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------EEEE-
T ss_pred c------------------------eEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-------EEee-
Confidence 1 11111123455677776 44444 444567899999876432 1111
Q ss_pred ccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCC
Q 017553 285 YPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP 324 (369)
Q Consensus 285 ~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~ 324 (369)
........+++..+ .++++-...+.|...|..+++
T Consensus 205 --~~l~~P~glav~~~---~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 205 --DDLPHPFGLTQYQD---YIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp --ECCSCEEEEEEETT---EEEEEETTTTEEEEEETTTCC
T ss_pred --ccCCCceEEEEECC---EEEEecCCCCEEEEEECCCCC
Confidence 11223456666542 255666668889999976664
No 293
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.26 E-value=0.0016 Score=55.76 Aligned_cols=157 Identities=8% Similarity=0.088 Sum_probs=92.3
Q ss_pred CeEEEEEeec-cCCCccEEEEecCCcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecC---Ce-
Q 017553 35 PLYAVVFNFI-DSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN---GI- 109 (369)
Q Consensus 35 ~v~~~~~s~~-~~~~~~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~d---g~- 109 (369)
....|+|+|+ + .+.++++-....|+.++..++....... .......+++. ++|. ++++...+ ..
T Consensus 140 ~P~gvavd~~s~--~g~Lyv~D~~~~I~~id~~~g~v~~~~~------~~~~P~giavd--~dG~-lyVad~~~~~~~~g 208 (433)
T 4hw6_A 140 NIWRMMFDPNSN--YDDLYWVGQRDAFRHVDFVNQYVDIKTT------NIGQCADVNFT--LNGD-MVVVDDQSSDTNTG 208 (433)
T ss_dssp CCCEEEECTTTT--TCEEEEECBTSCEEEEETTTTEEEEECC------CCSCEEEEEEC--TTCC-EEEEECCSCTTSEE
T ss_pred CCceEEEccccC--CCEEEEEeCCCCEEEEECCCCEEEEeec------CCCCccEEEEC--CCCC-EEEEcCCCCcccce
Confidence 4678999882 1 2566655444459999976665543332 22345667776 9998 66655422 12
Q ss_pred EEEEEcCCcccc--ceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCc
Q 017553 110 IRVIDVSNEKLH--KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDI 187 (369)
Q Consensus 110 i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 187 (369)
+...+.. +... ..+. .-.....++++|.++.++++-..++.|+.+|..++.....+... +....-..++|+| ++
T Consensus 209 v~~~~~~-~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~-~~~~~~~~ia~dp-dG 284 (433)
T 4hw6_A 209 IYLFTRA-SGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMM-DTKGSNFHIVWHP-TG 284 (433)
T ss_dssp EEEECGG-GTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEEC-SCCSSCEEEEECT-TS
T ss_pred EEEEECC-CCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEecc-CCCCCcccEEEeC-CC
Confidence 3333322 2211 1222 22345678888855666656566788999999877663333211 1222345799999 66
Q ss_pred e-EEEEEeeCCcEEEEEccC
Q 017553 188 Y-RIASCGMDNTVKIWSMKE 206 (369)
Q Consensus 188 ~-~l~~~~~d~~v~i~d~~~ 206 (369)
+ ++++-...+.|+.++...
T Consensus 285 ~~LYvad~~~~~I~~~~~d~ 304 (433)
T 4hw6_A 285 DWAYIIYNGKHCIYRVDYNR 304 (433)
T ss_dssp SEEEEEETTTTEEEEEEBCT
T ss_pred CEEEEEeCCCCEEEEEeCCC
Confidence 5 566666678899988763
No 294
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=98.26 E-value=0.00038 Score=56.60 Aligned_cols=226 Identities=7% Similarity=-0.003 Sum_probs=115.4
Q ss_pred EEEEeec--CCeEEEEEcCCccc--cceeeccccceEEEEecCCCCceEEEEeCC----CcEEEEEccCCcEEEEeeccC
Q 017553 100 FLVAGGI--NGIIRVIDVSNEKL--HKSFVGHGDSINEIRTQPLKPSLVVSASKD----ESVRLWNVQTGICILIFAGAG 171 (369)
Q Consensus 100 ~l~~~~~--dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~ 171 (369)
+++.|+. ...+.+||..+.+- +..+......-..+.+ ++.+++.|+.+ ..+.+||+.+++-...-. ..
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~-~p 89 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW---DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLG-PP 89 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE---TTEEEEECCBSSSBCCEEEEEETTTTEEEEEEC-CS
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE---CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCC-CC
Confidence 5666654 35688999877642 2222211111222222 56677888755 678899998876443322 11
Q ss_pred CCCCcEEEEEecCCCceEEEEEeeC------CcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceee
Q 017553 172 GHRNEVLSVDFHPSDIYRIASCGMD------NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDC 245 (369)
Q Consensus 172 ~~~~~v~~~~~~~~~~~~l~~~~~d------~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 245 (369)
...... +++.. ++.+++.|+.+ ..+.+||..+..-.... .+......-.+
T Consensus 90 ~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~---------------------~~p~~r~~~~~ 145 (306)
T 3ii7_A 90 TPRDSL-AACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP---------------------SMLTQRCSHGM 145 (306)
T ss_dssp SCCBSC-EEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC---------------------CCSSCCBSCEE
T ss_pred ccccce-eEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC---------------------CCcCCcceeEE
Confidence 111111 22222 66788888766 45888888874311100 00000111112
Q ss_pred eeeeCcEEEEeec---------CCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCC----
Q 017553 246 NRWLGDFILSKSV---------DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE---- 312 (369)
Q Consensus 246 ~~~~~~~l~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~d---- 312 (369)
+...+.+++.|+. -..+.+||+.+.. ...+..++..... .++ ...+++ +++.|+.+
T Consensus 146 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~-------W~~~~~~p~~r~~-~~~-~~~~~~--i~v~GG~~~~~~ 214 (306)
T 3ii7_A 146 VEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATET-------WTELCPMIEARKN-HGL-VFVKDK--IFAVGGQNGLGG 214 (306)
T ss_dssp EEETTEEEEECCEESCTTTCEECCCEEEEETTTTE-------EEEECCCSSCCBS-CEE-EEETTE--EEEECCEETTEE
T ss_pred EEECCEEEEECCCCCCCCcccccceEEEeCCCCCe-------EEECCCccchhhc-ceE-EEECCE--EEEEeCCCCCCC
Confidence 2334666666654 3458888887763 1122222221111 122 222443 66666543
Q ss_pred -CeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecC-----CeEEEEecCC
Q 017553 313 -GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCED-----GAIWRWDAIP 368 (369)
Q Consensus 313 -g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-----g~i~vw~~~~ 368 (369)
..+.+||+.+.+...+..++ ........+.+ ++++++.|+.+ ..+.+||+.+
T Consensus 215 ~~~~~~yd~~~~~W~~~~~~p--~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~ 272 (306)
T 3ii7_A 215 LDNVEYYDIKLNEWKMVSPMP--WKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTET 272 (306)
T ss_dssp BCCEEEEETTTTEEEECCCCS--CCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTT
T ss_pred CceEEEeeCCCCcEEECCCCC--CCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCC
Confidence 46899999887544333332 12222233333 67788888754 4588888765
No 295
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=98.24 E-value=0.0012 Score=53.54 Aligned_cols=237 Identities=9% Similarity=0.032 Sum_probs=120.1
Q ss_pred ccEEEEecCC---cEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecC----CeEEEEEcCCcccc
Q 017553 49 FNVFATVGGN---RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN----GIIRVIDVSNEKLH 121 (369)
Q Consensus 49 ~~~la~~~~~---~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~d----g~i~vwd~~~~~~~ 121 (369)
+.+++.|+.+ .+.+||..+++ ...+..... .... .+++ . .++. +++.|+.+ ..+.+||+.+.+-.
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~-W~~~~~~p~--~r~~-~~~~-~--~~~~-lyv~GG~~~~~~~~~~~~d~~~~~W~ 83 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYS-WTDIRCPFE--KRRD-AACV-F--WDNV-VYILGGSQLFPIKRMDCYNVVKDSWY 83 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTE-EEECCCCSC--CCBS-CEEE-E--ETTE-EEEECCBSSSBCCEEEEEETTTTEEE
T ss_pred ceEEEEeCCCCCceEEEecCCCCC-EecCCCCCc--ccce-eEEE-E--ECCE-EEEEeCCCCCCcceEEEEeCCCCeEE
Confidence 4566666643 39999977654 333332211 1111 1122 2 3566 77777754 67889998776432
Q ss_pred --ceeeccccceEEEEecCCCCceEEEEeCC------CcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEE
Q 017553 122 --KSFVGHGDSINEIRTQPLKPSLVVSASKD------ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASC 193 (369)
Q Consensus 122 --~~~~~~~~~v~~~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 193 (369)
..+.........+.+ ++.+++.|+.+ ..+.+||+.+++-... ......... .+++.. ++.+++.|
T Consensus 84 ~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~-~~~~~~--~~~iyv~G 156 (306)
T 3ii7_A 84 SKLGPPTPRDSLAACAA---EGKIYTSGGSEVGNSALYLFECYDTRTESWHTK-PSMLTQRCS-HGMVEA--NGLIYVCG 156 (306)
T ss_dssp EEECCSSCCBSCEEEEE---TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEE-CCCSSCCBS-CEEEEE--TTEEEEEC
T ss_pred ECCCCCccccceeEEEE---CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeC-CCCcCCcce-eEEEEE--CCEEEEEC
Confidence 122111111122222 56777777765 4689999988764333 211111111 122233 56777777
Q ss_pred eeC---------CcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeeeCcEEEEeecC-----
Q 017553 194 GMD---------NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVD----- 259 (369)
Q Consensus 194 ~~d---------~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d----- 259 (369)
+.+ ..+.+||+.+..-.... .+......-..+...+.+++.|+.+
T Consensus 157 G~~~~~~~~~~~~~~~~yd~~~~~W~~~~---------------------~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~ 215 (306)
T 3ii7_A 157 GSLGNNVSGRVLNSCEVYDPATETWTELC---------------------PMIEARKNHGLVFVKDKIFAVGGQNGLGGL 215 (306)
T ss_dssp CEESCTTTCEECCCEEEEETTTTEEEEEC---------------------CCSSCCBSCEEEEETTEEEEECCEETTEEB
T ss_pred CCCCCCCcccccceEEEeCCCCCeEEECC---------------------CccchhhcceEEEECCEEEEEeCCCCCCCC
Confidence 653 44788888774211110 0000011111222346667776654
Q ss_pred CeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCC-----CeEEEEEccCCCceeEEEee
Q 017553 260 NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE-----GKIFVWELQSSPPVLIARLS 332 (369)
Q Consensus 260 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~ 332 (369)
..+.+||+.+.+ ...+..++........+.+ +++ +++.|+.+ ..+.+||+.+.+...+..+.
T Consensus 216 ~~~~~yd~~~~~-------W~~~~~~p~~r~~~~~~~~--~~~--i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~ 282 (306)
T 3ii7_A 216 DNVEYYDIKLNE-------WKMVSPMPWKGVTVKCAAV--GSI--VYVLAGFQGVGRLGHILEYNTETDKWVANSKVR 282 (306)
T ss_dssp CCEEEEETTTTE-------EEECCCCSCCBSCCEEEEE--TTE--EEEEECBCSSSBCCEEEEEETTTTEEEEEEEEE
T ss_pred ceEEEeeCCCCc-------EEECCCCCCCccceeEEEE--CCE--EEEEeCcCCCeeeeeEEEEcCCCCeEEeCCCcc
Confidence 358889987753 1122222222222222222 443 66666633 57899999998766665555
No 296
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.22 E-value=0.0014 Score=53.74 Aligned_cols=289 Identities=9% Similarity=0.010 Sum_probs=142.8
Q ss_pred ccceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCcc
Q 017553 20 KREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIP 99 (369)
Q Consensus 20 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~ 99 (369)
-..|+... + .....+.+|.|.+ .+..++++. .+..+.....++....+... .......+..+.+. + +.
T Consensus 24 g~~W~~~~-~-~~~~~~~~v~~~~----~~~~~~~G~-~g~i~~s~DgG~tW~~~~~~-~~~~~~~~~~i~~~--~-~~- 91 (327)
T 2xbg_A 24 YNPWEAIQ-L-PTTATILDMSFID----RHHGWLVGV-NATLMETRDGGQTWEPRTLV-LDHSDYRFNSVSFQ--G-NE- 91 (327)
T ss_dssp SCCEEEEE-C-SCSSCEEEEEESS----SSCEEEEET-TTEEEEESSTTSSCEECCCC-CSCCCCEEEEEEEE--T-TE-
T ss_pred CCCceEee-c-CCCCcEEEEEECC----CCcEEEEcC-CCeEEEeCCCCCCCeECCCC-CCCCCccEEEEEec--C-Ce-
Confidence 34555443 2 2345799999876 356777554 44333333344443333211 11123457777765 5 44
Q ss_pred EEEEeecCCeEEEEEcCCccccceee---ccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCc
Q 017553 100 FLVAGGINGIIRVIDVSNEKLHKSFV---GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNE 176 (369)
Q Consensus 100 ~l~~~~~dg~i~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 176 (369)
.++ ++..|.|.. ..+.++.-..+. .+.+.+..+.+.+ ++..++.+ .+|.|.. ....|+.-..... .....
T Consensus 92 ~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~-~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~--~~~~~ 164 (327)
T 2xbg_A 92 GWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALG-NGSAEMIT-NVGAIYR-TKDSGKNWQALVQ--EAIGV 164 (327)
T ss_dssp EEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEE-TTEEEEEE-TTCCEEE-ESSTTSSEEEEEC--SCCCC
T ss_pred EEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEEC-CCCEEEEe-CCccEEE-EcCCCCCCEEeec--CCCcc
Confidence 444 455675544 323343322222 2334577787766 55555544 4565432 2223444333332 45567
Q ss_pred EEEEEecCCCceEEEEEeeCCcEEE-EEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee-CcEEE
Q 017553 177 VLSVDFHPSDIYRIASCGMDNTVKI-WSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFIL 254 (369)
Q Consensus 177 v~~~~~~~~~~~~l~~~~~d~~v~i-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~ 254 (369)
+..+.+.| ++.+++.+. +|.+.. .|-.. ... .++ .......+..+.+. ...++
T Consensus 165 ~~~~~~~~-~~~~~~~g~-~G~~~~S~d~gG-~tW--------------------~~~--~~~~~~~~~~~~~~~~g~~~ 219 (327)
T 2xbg_A 165 MRNLNRSP-SGEYVAVSS-RGSFYSTWEPGQ-TAW--------------------EPH--NRTTSRRLHNMGFTPDGRLW 219 (327)
T ss_dssp EEEEEECT-TSCEEEEET-TSSEEEEECTTC-SSC--------------------EEE--ECCSSSCEEEEEECTTSCEE
T ss_pred eEEEEEcC-CCcEEEEEC-CCcEEEEeCCCC-Cce--------------------eEC--CCCCCCccceeEECCCCCEE
Confidence 89999998 777666554 454433 33211 000 000 01223445566665 33455
Q ss_pred EeecCCeEEEecCCCCCCCCCCCccceeeec-cCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEee-
Q 017553 255 SKSVDNEIVLWEPKMKEQSPGEGTADILQKY-PVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLS- 332 (369)
Q Consensus 255 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~- 332 (369)
.++.+|.+++.+...++. ...+... ......+..+++.+++. +++++ .+|.| ++....++ .-..+.
T Consensus 220 ~~~~~G~~~~s~~D~G~t------W~~~~~~~~~~~~~~~~v~~~~~~~--~~~~g-~~g~i-~~S~DgG~--tW~~~~~ 287 (327)
T 2xbg_A 220 MIVNGGKIAFSDPDNSEN------WGELLSPLRRNSVGFLDLAYRTPNE--VWLAG-GAGAL-LCSQDGGQ--TWQQDVD 287 (327)
T ss_dssp EEETTTEEEEEETTEEEE------ECCCBCTTSSCCSCEEEEEESSSSC--EEEEE-STTCE-EEESSTTS--SCEECGG
T ss_pred EEeCCceEEEecCCCCCe------eEeccCCcccCCcceEEEEecCCCE--EEEEe-CCCeE-EEeCCCCc--ccEEcCc
Confidence 566778877763221210 0011100 01123477888887664 55554 46666 34444442 222222
Q ss_pred cCCCccceEEEEecCCCCEEEEeecCCeEEEEe
Q 017553 333 HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 365 (369)
Q Consensus 333 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~ 365 (369)
.......+.++.|.+++. ++.++.+|.|.-++
T Consensus 288 ~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 288 VKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp GTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred cCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence 111235678888876554 55666789877665
No 297
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.14 E-value=0.0027 Score=54.30 Aligned_cols=243 Identities=9% Similarity=0.024 Sum_probs=129.4
Q ss_pred eeEEEeeecCC---CccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCC---C-cEEEEEc
Q 017553 86 FYTVSWACNVD---GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD---E-SVRLWNV 158 (369)
Q Consensus 86 v~~~~~~~~~~---g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---g-~i~vwd~ 158 (369)
-..++|. |+ |. |+.+...+.|+.+|..+++... +.........+++++ +++++++.... . .+...+.
T Consensus 141 P~gvavd--~~s~~g~--Lyv~D~~~~I~~id~~~g~v~~-~~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~ 214 (433)
T 4hw6_A 141 IWRMMFD--PNSNYDD--LYWVGQRDAFRHVDFVNQYVDI-KTTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTR 214 (433)
T ss_dssp CCEEEEC--TTTTTCE--EEEECBTSCEEEEETTTTEEEE-ECCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECG
T ss_pred CceEEEc--cccCCCE--EEEEeCCCCEEEEECCCCEEEE-eecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEEC
Confidence 3456666 64 54 5555444889999987766443 333445688999999 77755544321 1 1333333
Q ss_pred cCCcE-EEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeec
Q 017553 159 QTGIC-ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS 237 (369)
Q Consensus 159 ~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (369)
..+.. ...+. .......++++|.++.++++-..++.|+.+|..++.... .+....
T Consensus 215 ~~~~~~~~~~~----~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~--------------------~~~~~~ 270 (433)
T 4hw6_A 215 ASGFTERLSLC----NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTE--------------------EEVMMD 270 (433)
T ss_dssp GGTTCCEEEEE----ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEE--------------------EEEECS
T ss_pred CCCeecccccc----ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEE--------------------EEeccC
Confidence 22211 01111 223345688888566666666667789888887532100 000000
Q ss_pred cCCCceeeeeee--CcEE-EEeecCCeEEEecCCCCCCCCCCCccceeeec------------cCCCCCeeEEEE-----
Q 017553 238 VHSNYVDCNRWL--GDFI-LSKSVDNEIVLWEPKMKEQSPGEGTADILQKY------------PVPECDIWFIKF----- 297 (369)
Q Consensus 238 ~~~~~v~~~~~~--~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~------------~~~~~~i~~~~~----- 297 (369)
....-..++++ +++| ++-...+.|+.+++........ ....+... ...-.....+++
T Consensus 271 -~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~--~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~ 347 (433)
T 4hw6_A 271 -TKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLA--VPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEA 347 (433)
T ss_dssp -CCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBC--CCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGG
T ss_pred -CCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccC--cEEEEEecCCCCccCCCcccceEEcCCccEEEEcccc
Confidence 11112246665 6644 4445567899977653211000 00000000 001123456888
Q ss_pred ----eecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCC----------------CccceEEEEec-CCCCEEEEee
Q 017553 298 ----SCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQ----------------SKSPIRQTAMS-YDGSTILSCC 356 (369)
Q Consensus 298 ----s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----------------~~~~v~~~~~s-~~~~~l~s~~ 356 (369)
.+++ .+.++-...++|+.++. ++. +..+...+ .-.....++++ ++|.++++=.
T Consensus 348 y~~dd~~g--~lyvaD~~n~~I~~~~~-~G~---v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~ 421 (433)
T 4hw6_A 348 YAGEEDEY--DFYFCDRDSHTVRVLTP-EGR---VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDC 421 (433)
T ss_dssp GTTSSCCE--EEEEEETTTTEEEEECT-TSE---EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEG
T ss_pred ccccCCCC--cEEEEECCCCEEEEECC-CCC---EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeC
Confidence 4444 36666667789999985 342 22222100 11347889999 6777777666
Q ss_pred cCCeEEEEecC
Q 017553 357 EDGAIWRWDAI 367 (369)
Q Consensus 357 ~dg~i~vw~~~ 367 (369)
.++.|+..+++
T Consensus 422 ~n~rIr~i~~e 432 (433)
T 4hw6_A 422 DNHRVRKIAPE 432 (433)
T ss_dssp GGTEEEEEEEC
T ss_pred CCCEEEEEecC
Confidence 78889988765
No 298
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.13 E-value=0.0044 Score=55.61 Aligned_cols=161 Identities=9% Similarity=-0.043 Sum_probs=94.5
Q ss_pred CcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEE
Q 017553 33 KRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIR 111 (369)
Q Consensus 33 ~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~ 111 (369)
-....+++|++. .+.++.+-..++ |..+++........+-. ..-.....+++. +.+..++++-...+.|.
T Consensus 39 ~~~~~~ld~~~~---~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~----~~~~~P~GlAvD--~~~~~ly~~d~~~~~I~ 109 (619)
T 3s94_A 39 LEDAAAVDFVFS---HGLIYWSDVSEEAIKRTEFNKTESVQNVVV----SGLLSPDGLACD--WLGEKLYWTDSETNRIE 109 (619)
T ss_dssp CSCEEEEEEETT---TTEEEEEETTTTEEEEEEC-----CEEEEC----SSCSCEEEEEEE--TTTTEEEEEETTTTEEE
T ss_pred CCceEEEEEEeC---CCEEEEEECCCCeEEEEEccCCCceEEEEe----CCCCCcCeEEEE--ecCCEEEEEeCCCCEEE
Confidence 345789999983 245555544444 88888654422122111 111345567776 65553666667789999
Q ss_pred EEEcCCccccceee-ccccceEEEEecCCCCceEEEEe-CCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceE
Q 017553 112 VIDVSNEKLHKSFV-GHGDSINEIRTQPLKPSLVVSAS-KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYR 189 (369)
Q Consensus 112 vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 189 (369)
+.+++.. ....+. ..-.....|++.|.++.++++-. ..+.|...++.......... ..-.....+++++.++.+
T Consensus 110 v~~~dG~-~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~---~~~~~P~Glald~~~~~L 185 (619)
T 3s94_A 110 VSNLDGS-LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN---SEIYWPNGLTLDYEEQKL 185 (619)
T ss_dssp EEETTSC-SCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC---SSCSSEEEEEEETTTTEE
T ss_pred EEECCCC-CEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEe---CCCCCCcEEEEEccCCEE
Confidence 9998643 333332 33455788999994454555532 24567777765433333332 234567899999856666
Q ss_pred EEEEeeCCcEEEEEccC
Q 017553 190 IASCGMDNTVKIWSMKE 206 (369)
Q Consensus 190 l~~~~~d~~v~i~d~~~ 206 (369)
+++-...+.|..+|+..
T Consensus 186 Y~aD~~~~~I~~~~~dG 202 (619)
T 3s94_A 186 YWADAKLNFIHKSNLDG 202 (619)
T ss_dssp EEEETTTCCEEEESSSC
T ss_pred EEEeCCCCeEEEecCCC
Confidence 66666677888888876
No 299
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.11 E-value=0.008 Score=57.92 Aligned_cols=216 Identities=12% Similarity=0.041 Sum_probs=123.0
Q ss_pred eEEEEEcCCccccceeec-cccceEEEE---ecCCCCceEEEEe----------CCCcEEEEEccCCcEEEEeeccCCCC
Q 017553 109 IIRVIDVSNEKLHKSFVG-HGDSINEIR---TQPLKPSLVVSAS----------KDESVRLWNVQTGICILIFAGAGGHR 174 (369)
Q Consensus 109 ~i~vwd~~~~~~~~~~~~-~~~~v~~~~---~~~~~~~~l~s~~----------~dg~i~vwd~~~~~~~~~~~~~~~~~ 174 (369)
.|++.|..+.+.+..+.- ....+.+++ |......+|+.|. ..|.|.++++..++.....+. ...
T Consensus 808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~--~v~ 885 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEK--EVK 885 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEE--EES
T ss_pred EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEE--EcC
Confidence 467777666665544431 223344444 4432356788775 358899999975543332222 357
Q ss_pred CcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCC-ceeeeeeeCcEE
Q 017553 175 NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN-YVDCNRWLGDFI 253 (369)
Q Consensus 175 ~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~l 253 (369)
++|++++-- ++.++++ ...+|++|++...+... ........ .+..+...++++
T Consensus 886 g~v~al~~~--~g~Lla~--ig~~l~vy~l~~~~~L~----------------------~~~~~~~~i~~~~l~~~~~~I 939 (1158)
T 3ei3_A 886 GAVYSMVEF--NGKLLAS--INSTVRLYEWTTEKELR----------------------TECNHYNNIMALYLKTKGDFI 939 (1158)
T ss_dssp SCEEEEEEE--TTEEEEE--ETTEEEEEEECTTSCEE----------------------EEEEECCCSCEEEEEEETTEE
T ss_pred CcCEEEeee--CCEEEEE--cCCEEEEEECCCCceEE----------------------EEeeccccEEEEEEeccCCEE
Confidence 889998865 4554443 35789999997632111 00111111 122444458899
Q ss_pred EEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCC--------c
Q 017553 254 LSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP--------P 325 (369)
Q Consensus 254 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~--------~ 325 (369)
+.|..-..+.++..+.... ....+. -......++++.+-.+. .++.+..+|.+.++...... .
T Consensus 940 ~vgD~~~Sv~~~~y~~~~~-----~L~~~a-~D~~~~~vta~~~ld~~---t~l~aD~~gNl~vl~~~~~~~~~~~~~~L 1010 (1158)
T 3ei3_A 940 LVGDLMRSVLLLAYKPMEG-----NFEEIA-RDFNPNWMSAVEILDDD---NFLGAENAFNLFVCQKDSAATTDEERQHL 1010 (1158)
T ss_dssp EEEESSBCEEEEEEETTTT-----EEEEEE-ECCSCBCEEEEEEEETT---EEEEEETTSEEEEEEECTTCCSTTGGGBE
T ss_pred EEEEhhheEEEEEEEcCCC-----eEEEEE-eecccccEEEEEEEccC---cEEEEcCCCcEEEEecCCCCCCcccccee
Confidence 9998888777765543221 111121 12234567888887665 67888999999999876521 1
Q ss_pred eeEEEeecCCCccceEEEE---ecCC---------CCEEEEeecCCeEEEE
Q 017553 326 VLIARLSHAQSKSPIRQTA---MSYD---------GSTILSCCEDGAIWRW 364 (369)
Q Consensus 326 ~~~~~~~~~~~~~~v~~~~---~s~~---------~~~l~s~~~dg~i~vw 364 (369)
.....+.. ...|+++. +.+. ...++-++.+|.|.+.
T Consensus 1011 ~~~~~fhl---G~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l 1058 (1158)
T 3ei3_A 1011 QEVGLFHL---GEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLV 1058 (1158)
T ss_dssp EEEEEEEC---SSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEE
T ss_pred eeEEEEeC---CCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEE
Confidence 12222222 24677765 3332 2346778889988764
No 300
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=98.10 E-value=0.0024 Score=51.69 Aligned_cols=230 Identities=11% Similarity=0.080 Sum_probs=113.5
Q ss_pred ccEEEEecCC-----cEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecC-----CeEEEEEcCCc
Q 017553 49 FNVFATVGGN-----RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN-----GIIRVIDVSNE 118 (369)
Q Consensus 49 ~~~la~~~~~-----~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~d-----g~i~vwd~~~~ 118 (369)
+.+++.|+.+ .+..||+.+.. ...+..... ... -.+++ . .++. +++.|+.+ ..+.+||..+.
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~-W~~~~~~p~--~r~-~~~~~-~--~~~~-lyv~GG~~~~~~~~~~~~~d~~~~ 87 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEER-WHQVAELPS--RRC-RAGMV-Y--MAGL-VFAVGGFNGSLRVRTVDSYDPVKD 87 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTE-EEEECCCSS--CCB-SCEEE-E--ETTE-EEEESCBCSSSBCCCEEEEETTTT
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCc-EeEcccCCc--ccc-cceEE-E--ECCE-EEEEeCcCCCccccceEEECCCCC
Confidence 3566666632 38889977664 333332211 111 11122 2 3555 77777754 35888998766
Q ss_pred cc--cceeeccccceEEEEecCCCCceEEEEeCCC-----cEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEE
Q 017553 119 KL--HKSFVGHGDSINEIRTQPLKPSLVVSASKDE-----SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIA 191 (369)
Q Consensus 119 ~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 191 (369)
+- +..+......-..+.+ ++.+++.|+.++ .+.+||+.+++-... .... ....-.+++.. ++.+++
T Consensus 88 ~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~-~~~p-~~r~~~~~~~~--~~~iyv 160 (302)
T 2xn4_A 88 QWTSVANMRDRRSTLGAAVL---NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHV-APMN-TRRSSVGVGVV--GGLLYA 160 (302)
T ss_dssp EEEEECCCSSCCBSCEEEEE---TTEEEEEEEECSSCEEEEEEEEETTTTEEEEE-CCCS-SCCBSCEEEEE--TTEEEE
T ss_pred ceeeCCCCCccccceEEEEE---CCEEEEEcCCCCCccCceEEEEeCCCCeEeec-CCCC-CcccCceEEEE--CCEEEE
Confidence 42 2222211111122222 467777777653 577888887654332 2111 11111223333 567778
Q ss_pred EEeeC-------CcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeeeCcEEEEeecC-----
Q 017553 192 SCGMD-------NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVD----- 259 (369)
Q Consensus 192 ~~~~d-------~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d----- 259 (369)
.|+.+ ..+.+||+.+..-.... .+........++.+++.+++.|+.+
T Consensus 161 ~GG~~~~~~~~~~~~~~yd~~~~~W~~~~---------------------~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~ 219 (302)
T 2xn4_A 161 VGGYDVASRQCLSTVECYNATTNEWTYIA---------------------EMSTRRSGAGVGVLNNLLYAVGGHDGPLVR 219 (302)
T ss_dssp ECCEETTTTEECCCEEEEETTTTEEEEEC---------------------CCSSCCBSCEEEEETTEEEEECCBSSSSBC
T ss_pred EeCCCCCCCccccEEEEEeCCCCcEEECC---------------------CCccccccccEEEECCEEEEECCCCCCccc
Confidence 77764 34788888774211110 0001111112233346777777764
Q ss_pred CeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCC-----CeEEEEEccCCCc
Q 017553 260 NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE-----GKIFVWELQSSPP 325 (369)
Q Consensus 260 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~d-----g~i~i~d~~~~~~ 325 (369)
..+.+||+.+.+ ...+..++...... . +...+++ +++.|+.+ ..+.+||+.+.+.
T Consensus 220 ~~~~~yd~~~~~-------W~~~~~~~~~r~~~-~-~~~~~~~--i~v~GG~~~~~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 220 KSVEVYDPTTNA-------WRQVADMNMCRRNA-G-VCAVNGL--LYVVGGDDGSCNLASVEYYNPTTDKW 279 (302)
T ss_dssp CCEEEEETTTTE-------EEEECCCSSCCBSC-E-EEEETTE--EEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred ceEEEEeCCCCC-------EeeCCCCCCccccC-e-EEEECCE--EEEECCcCCCcccccEEEEcCCCCeE
Confidence 368889987653 11222222211111 1 2223443 66666644 3489999988743
No 301
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.08 E-value=0.0055 Score=55.01 Aligned_cols=231 Identities=9% Similarity=-0.017 Sum_probs=123.6
Q ss_pred cEEEEecCCcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccc-eeeccc
Q 017553 50 NVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHK-SFVGHG 128 (369)
Q Consensus 50 ~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~ 128 (369)
.+|.-+....|+..++........+.. ..-.....+++. +.+..++++-...+.|..++++...... .+...-
T Consensus 10 ~~~~~~~~~~I~~i~~~~~~~~~~~~~----~~~~~~~~ld~~--~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~ 83 (619)
T 3s94_A 10 PLLLYANRRDLRLVDATNGKENATIVV----GGLEDAAAVDFV--FSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGL 83 (619)
T ss_dssp CCEEEECSSBEEEECCC---------C----BCCSCEEEEEEE--TTTTEEEEEETTTTEEEEEEC-----CEEEECSSC
T ss_pred ceEEEeccccEEEEeCCCCcceEEEEE----cCCCceEEEEEE--eCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCC
Confidence 355556666688888765421111110 122234556666 6555255555567889999986543222 222222
Q ss_pred cceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEe-eCCcEEEEEccCc
Q 017553 129 DSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG-MDNTVKIWSMKEF 207 (369)
Q Consensus 129 ~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~v~i~d~~~~ 207 (369)
.....+++.+.+++++++-...+.|.+.++........+. ..-.....|++.|.++.++++-- ..+.|...++...
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~---~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~ 160 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFW---QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS 160 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC---SSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEe---CCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCC
Confidence 5678999988556666666778899999987554333332 23445678999985566666542 2356666666541
Q ss_pred eeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEE-EEeecCCeEEEecCCCCCCCCCCCccceeee
Q 017553 208 WTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFI-LSKSVDNEIVLWEPKMKEQSPGEGTADILQK 284 (369)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 284 (369)
. ........-.....++++ ++.| ++-...+.|..+|+....... .+.
T Consensus 161 ~-----------------------~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~------~~~- 210 (619)
T 3s94_A 161 S-----------------------RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQA------VVK- 210 (619)
T ss_dssp S-----------------------CEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------
T ss_pred c-----------------------eEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEE------EEe-
Confidence 1 111111123345667776 3444 444456779998887543211 111
Q ss_pred ccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCC
Q 017553 285 YPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP 324 (369)
Q Consensus 285 ~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~ 324 (369)
........+++..+ .+..+-...+.|...|..+++
T Consensus 211 --~~~~~P~gi~~~~~---~ly~td~~~~~V~~~d~~tg~ 245 (619)
T 3s94_A 211 --GSLPHPFALTLFED---ILYWTDWSTHSILACNKYTGE 245 (619)
T ss_dssp -------CCCEEESSS---EEEEECTTTCSEEEEESSSCC
T ss_pred --CCCCCceEEEEeCC---EEEEecCCCCEEEEEECCCCc
Confidence 01122345666544 256666677889999987664
No 302
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=98.08 E-value=0.0011 Score=54.02 Aligned_cols=230 Identities=13% Similarity=0.070 Sum_probs=114.0
Q ss_pred CCCccEEEEeecC----CeEEEEEcCCcccc--ceeeccccceEEEEecCCCCceEEEEeC----C-----CcEEEEEcc
Q 017553 95 VDGIPFLVAGGIN----GIIRVIDVSNEKLH--KSFVGHGDSINEIRTQPLKPSLVVSASK----D-----ESVRLWNVQ 159 (369)
Q Consensus 95 ~~g~~~l~~~~~d----g~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~----d-----g~i~vwd~~ 159 (369)
-++. +++.|+.+ ..+.+||..+.+-. ..+......- +++.. ++.+++.|+. + ..+.+||+.
T Consensus 23 ~~~~-i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~ 98 (308)
T 1zgk_A 23 VGRL-IYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPM 98 (308)
T ss_dssp CCCC-EEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE--TTEEEEECCEEEETTEEEECCCEEEEETT
T ss_pred CCCE-EEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEEE--CCEEEEECCCcCCCCCCeecceEEEECCC
Confidence 3455 77777642 36889998766422 1121111111 22222 4567777765 2 468899988
Q ss_pred CCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCC-----cEEEEEccCceeeeeeeeeccCCCCCCCCceeeccee
Q 017553 160 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN-----TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF 234 (369)
Q Consensus 160 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-----~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (369)
+++-.. +.......... +++.. ++.+++.|+.++ .+.+||+.+..-.. .+
T Consensus 99 ~~~W~~-~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~--------~~------------- 153 (308)
T 1zgk_A 99 TNQWSP-CAPMSVPRNRI-GVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHL--------VA------------- 153 (308)
T ss_dssp TTEEEE-CCCCSSCCBTC-EEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEE--------CC-------------
T ss_pred CCeEeE-CCCCCcCcccc-EEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeE--------CC-------------
Confidence 765433 22111111111 22222 567788877543 57788887632111 10
Q ss_pred eeccCCCceeeeeeeCcEEEEeecC-----CeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEe
Q 017553 235 IASVHSNYVDCNRWLGDFILSKSVD-----NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG 309 (369)
Q Consensus 235 ~~~~~~~~v~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~ 309 (369)
.+......-.++.+.+.+++.|+.+ ..+.+||+.+.+ ...+..++...... +++. -+++ +++.|
T Consensus 154 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~-------W~~~~~~p~~r~~~-~~~~-~~~~--iyv~G 222 (308)
T 1zgk_A 154 PMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNE-------WRMITAMNTIRSGA-GVCV-LHNC--IYAAG 222 (308)
T ss_dssp CCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTE-------EEECCCCSSCCBSC-EEEE-ETTE--EEEEC
T ss_pred CCCccccceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCe-------EeeCCCCCCccccc-eEEE-ECCE--EEEEe
Confidence 0000111112223346677777654 458888887653 11122222221111 2222 2443 66666
Q ss_pred cCC-----CeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecC-----CeEEEEecCC
Q 017553 310 NRE-----GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCED-----GAIWRWDAIP 368 (369)
Q Consensus 310 ~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-----g~i~vw~~~~ 368 (369)
+.+ ..+.+||+.+.+...+..++ ........+.+ ++++++.|+.+ ..+.+||+.+
T Consensus 223 G~~~~~~~~~v~~yd~~~~~W~~~~~~p--~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~ 287 (308)
T 1zgk_A 223 GYDGQDQLNSVERYDVETETWTFVAPMK--HRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDT 287 (308)
T ss_dssp CBCSSSBCCCEEEEETTTTEEEECCCCS--SCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred CCCCCCccceEEEEeCCCCcEEECCCCC--CCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCC
Confidence 543 56999999887544333332 11122222222 67788888754 3577888764
No 303
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.06 E-value=0.0046 Score=53.31 Aligned_cols=257 Identities=7% Similarity=-0.064 Sum_probs=132.3
Q ss_pred eEEEeeecCC-CccEEEEeecCCeEEEEEcCCccccceeec---cccceEEEEe-------cCCCCceEEEEeCCC-c--
Q 017553 87 YTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVG---HGDSINEIRT-------QPLKPSLVVSASKDE-S-- 152 (369)
Q Consensus 87 ~~~~~~~~~~-g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~~~~v~~~~~-------~~~~~~~l~s~~~dg-~-- 152 (369)
..+++. |. ...++++-...+.|++.|+.++.....+.. .......|+| ++ ++..|+.+...+ .
T Consensus 142 ~~la~d--p~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 142 GRLAFD--PLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGD 218 (496)
T ss_dssp EEEEEE--TTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGG
T ss_pred CEEEEc--cCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCcc
Confidence 346665 73 342455544457799999877665433332 1235889999 99 676555554443 2
Q ss_pred ----EEEEEccC-CcEE-----EEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEcc-------Cceeeeeeee
Q 017553 153 ----VRLWNVQT-GICI-----LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMK-------EFWTYVEKSF 215 (369)
Q Consensus 153 ----i~vwd~~~-~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~-------~~~~~~~~~~ 215 (369)
|.+.+... +... ..+.. . .....++++|.++.++++-..++.|..+|+. ++........
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~---~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~ 294 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAA---Y-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK 294 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEE---E-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred cCceEEEEecCCCCceeecccceeecc---C-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence 66665433 1211 12221 1 1335678898667777777788889999997 3211000000
Q ss_pred eccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEE-EEeecCCeEEEecCCCCCCCCCCCccceeeec---c---
Q 017553 216 TWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFI-LSKSVDNEIVLWEPKMKEQSPGEGTADILQKY---P--- 286 (369)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~---~--- 286 (369)
. ... ....+... ........++|+ ++.| ++-.....|+.++......... ....+... .
T Consensus 295 ~-------~~g--~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~--~~~~~aG~~g~~G~~ 362 (496)
T 3kya_A 295 N-------NPN--TFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFI--TPYNFVGGYKQSGYR 362 (496)
T ss_dssp G-------CTT--TEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEC--CCEEEEEBTTBCCCB
T ss_pred c-------ccc--ccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceec--ccEEecCCCCCCccc
Confidence 0 000 00011111 112334677776 6644 4445567888866543210000 00000000 0
Q ss_pred ------CCCCCee-EEEEe-------ecCCccEEEEecCCCeEEEEEccCCCceeEEEeecC------------C-----
Q 017553 287 ------VPECDIW-FIKFS-------CDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHA------------Q----- 335 (369)
Q Consensus 287 ------~~~~~i~-~~~~s-------~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------------~----- 335 (369)
..-.... .++.. +++ .++++-...++|+.++ .++. +..+... +
T Consensus 363 DG~~~~a~f~~P~~gv~vd~~~~~~~~~g--~lyVaD~~N~rIr~i~-~~G~---v~TiaG~g~~~~~~~~~~~G~~dG~ 436 (496)
T 3kya_A 363 DDVGTEARMNNPCQGVFVKNPDYTGEEEY--DFYFVDRLNFCVRKVT-PEGI---VSTYAGRGASTSLADGNQWGTDDGD 436 (496)
T ss_dssp CCBGGGCBCSSEEEEEEEECTTCCSSCCE--EEEEEEGGGTEEEEEC-TTCB---EEEEEESCTTHHHHHSCSCCCCCEE
T ss_pred CCcccccccCCCeEEEEEccccccccCCC--eEEEEECCCCEEEEEe-CCCC---EEEEecccccccccCccccccCCCC
Confidence 0001223 33443 233 3666666788999998 3442 2222211 1
Q ss_pred -----CccceEEEEecCC-CCEEEEeecCCeEEEEecCC
Q 017553 336 -----SKSPIRQTAMSYD-GSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 336 -----~~~~v~~~~~s~~-~~~l~s~~~dg~i~vw~~~~ 368 (369)
.-.....|+++++ |.++++=..+.+|+.++++.
T Consensus 437 ~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~ 475 (496)
T 3kya_A 437 LREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQ 475 (496)
T ss_dssp TTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred chhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCC
Confidence 1134778999997 77777666788899998765
No 304
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.04 E-value=0.0032 Score=50.84 Aligned_cols=168 Identities=9% Similarity=0.065 Sum_probs=103.0
Q ss_pred ccCCcCeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEeeeccCC--ccc--ceeEEEee-ecCCCccEEEE
Q 017553 30 QEGKRPLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQSYVDED--KEE--SFYTVSWA-CNVDGIPFLVA 103 (369)
Q Consensus 30 ~~h~~~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~--~~~--~v~~~~~~-~~~~g~~~l~~ 103 (369)
.....---+++|.+. ++.++++.-..+ |..|+...+..... ...... ... .+..+.|. ..|+++ ++++
T Consensus 9 ~~~~~yPE~~~wd~~---~g~~~vs~l~~g~V~~~~~~~~~~~~~--~~~~~s~~g~~~~~~sGl~~~~~D~~gr-L~vv 82 (334)
T 2p9w_A 9 KVKNLTPEDTIYDRT---RQVFYQSNLYKGRIEVYNPKTQSHFNV--VIDGASSNGDGEQQMSGLSLLTHDNSKR-LFAV 82 (334)
T ss_dssp CCTTCCCSCEEEETT---TTEEEEEETTTTEEEEECTTTCCEEEE--CCTTTCCSSCCSEEEEEEEESSSSSCCE-EEEE
T ss_pred cCcccCCcCccCcCC---CCEEEEEeccCCEEEEEcCCCCeEEEE--ecCCccccCCCcceeeEEEEeccCCCCc-EEEE
Confidence 344444557889873 355555554555 99999765544333 121100 122 33556550 037777 6665
Q ss_pred ee-------------cCCeEEEEEcC---Cccccceee--ccc-----------cceEEEEecCCCCceEEEEeCC-CcE
Q 017553 104 GG-------------INGIIRVIDVS---NEKLHKSFV--GHG-----------DSINEIRTQPLKPSLVVSASKD-ESV 153 (369)
Q Consensus 104 ~~-------------~dg~i~vwd~~---~~~~~~~~~--~~~-----------~~v~~~~~~~~~~~~l~s~~~d-g~i 153 (369)
.. .+..|..+|+. +++.+.... ... .....++..+ +++..++++.- +.|
T Consensus 83 ~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~~I 161 (334)
T 2p9w_A 83 MKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMPAI 161 (334)
T ss_dssp EEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSCEE
T ss_pred EcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCCCCCeE
Confidence 43 25779999998 777664443 111 2488999999 88888888887 887
Q ss_pred EEEEccCCcEEEEee-cc--CCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccC
Q 017553 154 RLWNVQTGICILIFA-GA--GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206 (369)
Q Consensus 154 ~vwd~~~~~~~~~~~-~~--~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~ 206 (369)
...+.... .+..+. .. .......+.++++| +++.|++....+.|..+|++.
T Consensus 162 ~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~p-dg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 162 ARVSADGK-TVSTFAWESGNGGQRPGYSGITFDP-HSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEECTTSC-CEEEEEECCCCSSSCCSCSEEEEET-TTTEEEEESSSSSEEEEECSS
T ss_pred EEEeCCCC-EEeeeeecCCCcccccCcceEEEeC-CCCEEEEEcCCCeEEEEcCCC
Confidence 77776533 333222 11 01122367899999 777777666699999999884
No 305
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=98.01 E-value=0.0034 Score=51.04 Aligned_cols=237 Identities=10% Similarity=0.066 Sum_probs=117.2
Q ss_pred ccEEEEecC-----CcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeec----C-----CeEEEEE
Q 017553 49 FNVFATVGG-----NRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI----N-----GIIRVID 114 (369)
Q Consensus 49 ~~~la~~~~-----~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~----d-----g~i~vwd 114 (369)
+.+++.|+. +.+.+||..+.+ ...+..... ... -.+++ . .++. +++.|+. + ..+.+||
T Consensus 25 ~~i~v~GG~~~~~~~~~~~~d~~~~~-W~~~~~~p~--~r~-~~~~~-~--~~~~-lyv~GG~~~~~~~~~~~~~~~~~d 96 (308)
T 1zgk_A 25 RLIYTAGGYFRQSLSYLEAYNPSNGT-WLRLADLQV--PRS-GLAGC-V--VGGL-LYAVGGRNNSPDGNTDSSALDCYN 96 (308)
T ss_dssp CCEEEECCBSSSBCCCEEEEETTTTE-EEECCCCSS--CCB-SCEEE-E--ETTE-EEEECCEEEETTEEEECCCEEEEE
T ss_pred CEEEEEeCcCCCCcceEEEEcCCCCe-EeECCCCCc--ccc-cceEE-E--ECCE-EEEECCCcCCCCCCeecceEEEEC
Confidence 466677662 238899976654 333332211 111 11222 2 3555 7777765 2 3588899
Q ss_pred cCCccc--cceeeccccceEEEEecCCCCceEEEEeCC-----CcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCc
Q 017553 115 VSNEKL--HKSFVGHGDSINEIRTQPLKPSLVVSASKD-----ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDI 187 (369)
Q Consensus 115 ~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 187 (369)
+.+.+. +..+.........+.+ ++.+++.|+.+ ..+.+||+.+++-... ......... .+++.. ++
T Consensus 97 ~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~-~~~~~~--~~ 169 (308)
T 1zgk_A 97 PMTNQWSPCAPMSVPRNRIGVGVI---DGHIYAVGGSHGCIHHNSVERYEPERDEWHLV-APMLTRRIG-VGVAVL--NR 169 (308)
T ss_dssp TTTTEEEECCCCSSCCBTCEEEEE---TTEEEEECCEETTEECCCEEEEETTTTEEEEC-CCCSSCCBS-CEEEEE--TT
T ss_pred CCCCeEeECCCCCcCccccEEEEE---CCEEEEEcCCCCCcccccEEEECCCCCeEeEC-CCCCccccc-eEEEEE--CC
Confidence 876642 2222211111222222 45677777643 4688899887654332 211111111 122232 56
Q ss_pred eEEEEEeeC-----CcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeeeCcEEEEeecC---
Q 017553 188 YRIASCGMD-----NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVD--- 259 (369)
Q Consensus 188 ~~l~~~~~d-----~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d--- 259 (369)
.+++.|+.+ ..+.+||+.+..-.. .+ .+......-.++.+++.+++.|+.+
T Consensus 170 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~--------~~-------------~~p~~r~~~~~~~~~~~iyv~GG~~~~~ 228 (308)
T 1zgk_A 170 LLYAVGGFDGTNRLNSAECYYPERNEWRM--------IT-------------AMNTIRSGAGVCVLHNCIYAAGGYDGQD 228 (308)
T ss_dssp EEEEECCBCSSCBCCCEEEEETTTTEEEE--------CC-------------CCSSCCBSCEEEEETTEEEEECCBCSSS
T ss_pred EEEEEeCCCCCCcCceEEEEeCCCCeEee--------CC-------------CCCCccccceEEEECCEEEEEeCCCCCC
Confidence 778887765 358888887632111 10 0000111112233346677777764
Q ss_pred --CeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecC-----CCeEEEEEccCCCceeEEEee
Q 017553 260 --NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR-----EGKIFVWELQSSPPVLIARLS 332 (369)
Q Consensus 260 --~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~ 332 (369)
..+.+||+.+.+ ...+..++...... +++. .+++ +++.|+. ...+.+||+.+.+...+..++
T Consensus 229 ~~~~v~~yd~~~~~-------W~~~~~~p~~r~~~-~~~~-~~~~--i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 297 (308)
T 1zgk_A 229 QLNSVERYDVETET-------WTFVAPMKHRRSAL-GITV-HQGR--IYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMT 297 (308)
T ss_dssp BCCCEEEEETTTTE-------EEECCCCSSCCBSC-EEEE-ETTE--EEEECCBCSSCBCCEEEEEETTTTEEEEEEECS
T ss_pred ccceEEEEeCCCCc-------EEECCCCCCCccce-EEEE-ECCE--EEEEcCcCCCcccceEEEEcCCCCEEeecCCCC
Confidence 458899987753 11222222211111 2222 2443 6666663 356889999887655554443
No 306
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.99 E-value=0.0082 Score=53.94 Aligned_cols=223 Identities=6% Similarity=-0.130 Sum_probs=132.7
Q ss_pred EEEEeecCCeEEEEEcCCccccceee-ccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEE
Q 017553 100 FLVAGGINGIIRVIDVSNEKLHKSFV-GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVL 178 (369)
Q Consensus 100 ~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~ 178 (369)
+|+.+ ..+.|+..++.+......+. ..-..+..|+|++.++.++++-..++.|+.+++........+. .-.....
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~---~g~~~P~ 83 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVE---FGLDYPE 83 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC---SSCSCCC
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEe---CCCCCcc
Confidence 44444 45689999997654322222 1234678999999556666666678899999987554433333 1223566
Q ss_pred EEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEe
Q 017553 179 SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSK 256 (369)
Q Consensus 179 ~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~ 256 (369)
.+++.+.+++++++-...+.|.+.++..... .......-.....++++ ...|+..
T Consensus 84 GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~-----------------------~~l~~~~l~~P~~iavdp~~G~lY~t 140 (628)
T 4a0p_A 84 GMAVDWLGKNLYWADTGTNRIEVSKLDGQHR-----------------------QVLVWKDLDSPRALALDPAEGFMYWT 140 (628)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSTTC-----------------------EEEECSSCCCEEEEEEETTTTEEEEE
T ss_pred eEEEEeCCCEEEEEECCCCEEEEEecCCCcE-----------------------EEEEeCCCCCcccEEEccCCCeEEEe
Confidence 7888764677777777778899998876211 00111122334667776 3344443
Q ss_pred e--cCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecC
Q 017553 257 S--VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHA 334 (369)
Q Consensus 257 ~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 334 (369)
. ..+.|...++..... . .+. ..-.....++++++++ .+.++-...+.|..+|+.....+.+ .
T Consensus 141 D~g~~~~I~r~~~dG~~~------~-~l~---~~~~~P~GlalD~~~~-~LY~aD~~~~~I~~~d~dG~~~~v~---~-- 204 (628)
T 4a0p_A 141 EWGGKPKIDRAAMDGSER------T-TLV---PNVGRANGLTIDYAKR-RLYWTDLDTNLIESSNMLGLNREVI---A-- 204 (628)
T ss_dssp ECSSSCEEEEEETTSCSC------E-EEE---CSCSSEEEEEEETTTT-EEEEEETTTTEEEEEETTSCSCEEE---E--
T ss_pred CCCCCCEEEEEeCCCCce------E-EEE---CCCCCcceEEEccccC-EEEEEECCCCEEEEEcCCCCceEEe---e--
Confidence 3 246777777655431 0 111 1234567899999776 3455556778999999987644322 2
Q ss_pred CCccceEEEEecCCCCEEEEeecCCeEEEEec
Q 017553 335 QSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 366 (369)
Q Consensus 335 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~ 366 (369)
........+++.. +.++.+-...+.|...|.
T Consensus 205 ~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk 235 (628)
T 4a0p_A 205 DDLPHPFGLTQYQ-DYIYWTDWSRRSIERANK 235 (628)
T ss_dssp ECCSCEEEEEEET-TEEEEEETTTTEEEEEET
T ss_pred ccCCCceEEEEEC-CEEEEecCCCCEEEEEEC
Confidence 1123455777765 344444445677777764
No 307
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.99 E-value=0.0043 Score=50.56 Aligned_cols=225 Identities=9% Similarity=0.011 Sum_probs=110.8
Q ss_pred EEEEeecCCeEEEEEcCCccccc-eeecc-ccceEEEEecCCCCceEEEEeC----C-------CcEEEEEccCCcEEEE
Q 017553 100 FLVAGGINGIIRVIDVSNEKLHK-SFVGH-GDSINEIRTQPLKPSLVVSASK----D-------ESVRLWNVQTGICILI 166 (369)
Q Consensus 100 ~l~~~~~dg~i~vwd~~~~~~~~-~~~~~-~~~v~~~~~~~~~~~~l~s~~~----d-------g~i~vwd~~~~~~~~~ 166 (369)
+++.|+ ..+.+||..+++-.. .+... ...-.+++. . ++.+++.|+. + ..+..||..+++-..
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~- 81 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVT-K-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG- 81 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEEC-T-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE-
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEE-E-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEE-
Confidence 455565 578999988776322 11111 111122222 3 6677777773 1 127788888766432
Q ss_pred eeccCCCCCcEEEEEecCCCceEEEEEeeC--------CcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeecc
Q 017553 167 FAGAGGHRNEVLSVDFHPSDIYRIASCGMD--------NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV 238 (369)
Q Consensus 167 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (369)
+.... ....-.+++.. ++.+++.|+.+ ..+.+||..+..-. ..+ .+..
T Consensus 82 ~~~~p-~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~--------~~~-------------~~p~ 137 (315)
T 4asc_A 82 MPPLP-SPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWG--------ESD-------------PLPY 137 (315)
T ss_dssp CCCBS-SCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEE--------ECC-------------CCSS
T ss_pred CCCCC-cchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEe--------ECC-------------CCCC
Confidence 22111 11111123333 56778888753 35888888773211 110 0001
Q ss_pred CCCceeeeeeeCcEEEEeec-C-----CeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCC
Q 017553 239 HSNYVDCNRWLGDFILSKSV-D-----NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE 312 (369)
Q Consensus 239 ~~~~v~~~~~~~~~l~~~~~-d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~d 312 (369)
....-.++...+..++.|+. + ..+.+||+.+.+ ...+..++.....- + +...+++ +++.|+.+
T Consensus 138 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~-------W~~~~~~p~~r~~~-~-~~~~~~~--iyv~GG~~ 206 (315)
T 4asc_A 138 VVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFE-------WKELAPMQTARSLF-G-ATVHDGR--IIVAAGVT 206 (315)
T ss_dssp CCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTE-------EEECCCCSSCCBSC-E-EEEETTE--EEEEEEEC
T ss_pred cccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCe-------EEECCCCCCchhce-E-EEEECCE--EEEEeccC
Confidence 11111222334667777776 2 458889887653 11222222211111 1 2223443 56666543
Q ss_pred C-----eEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCC--------------eEEEEecCC
Q 017553 313 G-----KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDG--------------AIWRWDAIP 368 (369)
Q Consensus 313 g-----~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg--------------~i~vw~~~~ 368 (369)
+ .+.+||+.+.+...+..++ ........+.+ ++++++.|+.++ .+.+||+++
T Consensus 207 ~~~~~~~~~~yd~~~~~W~~~~~~p--~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~ 277 (315)
T 4asc_A 207 DTGLTSSAEVYSITDNKWAPFEAFP--QERSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEE 277 (315)
T ss_dssp SSSEEEEEEEEETTTTEEEEECCCS--SCCBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTT
T ss_pred CCCccceEEEEECCCCeEEECCCCC--CcccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCC
Confidence 3 5889999887544443332 11122222333 667778887642 367787764
No 308
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.97 E-value=0.0046 Score=50.36 Aligned_cols=205 Identities=11% Similarity=0.099 Sum_probs=119.2
Q ss_pred EEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCC----c---eEEEEe-C--CCcEEEEEcc--CCcEEEEe
Q 017553 100 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKP----S---LVVSAS-K--DESVRLWNVQ--TGICILIF 167 (369)
Q Consensus 100 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~----~---~l~s~~-~--dg~i~vwd~~--~~~~~~~~ 167 (369)
+++.....+-+.+||+ +++.++.+.. +.++.+..-| +- . ++++.. . +++|++|++. ++ .+..+
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~-~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~-~l~~i 116 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRY-DFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-TLQSM 116 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEE-EEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC-CEEEC
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEec-ccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC-ceeec
Confidence 5666667788999999 8888888763 5566666655 21 1 233333 3 5799999773 33 34444
Q ss_pred ecc--C-CCC-CcEEEEEe--cCCCc-eEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCC
Q 017553 168 AGA--G-GHR-NEVLSVDF--HPSDI-YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 240 (369)
Q Consensus 168 ~~~--~-~~~-~~v~~~~~--~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (369)
... . +.. ..++.+++ +|..+ .++++...+|.+..|++...... ......+..+.. .
T Consensus 117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g----------------~~~~~lVR~f~l-g 179 (355)
T 3amr_A 117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNG----------------YISGKKVRAFKM-N 179 (355)
T ss_dssp SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTS----------------CEEEEEEEEEEC-S
T ss_pred cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCC----------------cccceEEEEecC-C
Confidence 210 0 011 56777887 66344 36777888899999998541000 001222333333 2
Q ss_pred Cceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeecc--CCCCCeeEEEEe--ecCCccEEEEecCCCe
Q 017553 241 NYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP--VPECDIWFIKFS--CDFHYNAAAIGNREGK 314 (369)
Q Consensus 241 ~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~s--~~~~~~~l~~~~~dg~ 314 (369)
..+-.+..+ ...|+.+-++..|..++....... ....+.... .-...+..+++- ++++..+++++-.++.
T Consensus 180 sq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~----~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s 255 (355)
T 3amr_A 180 SQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGS----NGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSS 255 (355)
T ss_dssp SCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCS----CCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTE
T ss_pred CCcceEEEcCCCCeEEEecccceEEEEeCCcCCCC----CceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCE
Confidence 356666666 568888888877666664422100 111333332 122467788874 5554335555557789
Q ss_pred EEEEEcc-CCCceeEEEee
Q 017553 315 IFVWELQ-SSPPVLIARLS 332 (369)
Q Consensus 315 i~i~d~~-~~~~~~~~~~~ 332 (369)
..+||.. +. ..+..+.
T Consensus 256 ~~Vydr~~~~--~~vg~f~ 272 (355)
T 3amr_A 256 YAIYDRQGKN--KYVADFR 272 (355)
T ss_dssp EEEEESSTTC--CEEEEEE
T ss_pred EEEEECCCCC--cEEEEEE
Confidence 9999997 44 3455553
No 309
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.91 E-value=0.0061 Score=49.68 Aligned_cols=184 Identities=12% Similarity=0.042 Sum_probs=90.9
Q ss_pred EEEEecCCcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeec----C-------CeEEEEEcCCcc
Q 017553 51 VFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI----N-------GIIRVIDVSNEK 119 (369)
Q Consensus 51 ~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~----d-------g~i~vwd~~~~~ 119 (369)
+++.|+ +.+.+||..+++-. . ..... ........+.. .++. +++.|+. + ..+.+||..+.+
T Consensus 7 l~~~GG-~~~~~yd~~~~~W~-~-~~~~~--p~~r~~~~~~~--~~~~-iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~ 78 (315)
T 4asc_A 7 IFMISE-EGAVAYDPAANECY-C-ASLSS--QVPKNHVSLVT--KENQ-VFVAGGLFYNEDNKEDPMSAYFLQFDHLDSE 78 (315)
T ss_dssp EEEEET-TEEEEEETTTTEEE-E-EECCC--CSCSSEEEEEC--TTCC-EEEEEEEEECSSCSSSCEEEEEEEEETTTTE
T ss_pred EEEEcC-CceEEECCCCCeEe-c-CCCCC--CCCccceEEEE--ECCE-EEEEcCcccCCCCCccccccceEEecCCCCe
Confidence 444444 56999998776632 2 22111 11111222222 4566 7777773 1 127788887664
Q ss_pred c--cceeeccccceEEEEecCCCCceEEEEeCC--------CcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceE
Q 017553 120 L--HKSFVGHGDSINEIRTQPLKPSLVVSASKD--------ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYR 189 (369)
Q Consensus 120 ~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 189 (369)
- +..+......-..+.+ ++.+++.|+.+ ..+.+||+.+++-.. +......... .+++.. ++.+
T Consensus 79 W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~-~~~~~~--~~~i 151 (315)
T 4asc_A 79 WLGMPPLPSPRCLFGLGEA---LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGE-SDPLPYVVYG-HTVLSH--MDLV 151 (315)
T ss_dssp EEECCCBSSCEESCEEEEE---TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEE-CCCCSSCCBS-CEEEEE--TTEE
T ss_pred EEECCCCCcchhceeEEEE---CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeE-CCCCCCcccc-eeEEEE--CCEE
Confidence 2 2222211111112222 45677777742 468999998775332 2211111111 122333 6678
Q ss_pred EEEEee-C-----CcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeeeCcEEEEeecCC---
Q 017553 190 IASCGM-D-----NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDN--- 260 (369)
Q Consensus 190 l~~~~~-d-----~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~--- 260 (369)
++.|+. + ..+.+||+.+..-. ..+ .+......-.++.+++.+++.|+.++
T Consensus 152 yv~GG~~~~~~~~~~~~~yd~~~~~W~--------~~~-------------~~p~~r~~~~~~~~~~~iyv~GG~~~~~~ 210 (315)
T 4asc_A 152 YVIGGKGSDRKCLNKMCVYDPKKFEWK--------ELA-------------PMQTARSLFGATVHDGRIIVAAGVTDTGL 210 (315)
T ss_dssp EEECCBCTTSCBCCCEEEEETTTTEEE--------ECC-------------CCSSCCBSCEEEEETTEEEEEEEECSSSE
T ss_pred EEEeCCCCCCcccceEEEEeCCCCeEE--------ECC-------------CCCCchhceEEEEECCEEEEEeccCCCCc
Confidence 888876 2 46888888773211 110 00111111122333477777777654
Q ss_pred --eEEEecCCCC
Q 017553 261 --EIVLWEPKMK 270 (369)
Q Consensus 261 --~i~i~d~~~~ 270 (369)
.+.+||+.+.
T Consensus 211 ~~~~~~yd~~~~ 222 (315)
T 4asc_A 211 TSSAEVYSITDN 222 (315)
T ss_dssp EEEEEEEETTTT
T ss_pred cceEEEEECCCC
Confidence 4888888765
No 310
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.84 E-value=0.0093 Score=49.53 Aligned_cols=143 Identities=12% Similarity=0.012 Sum_probs=75.1
Q ss_pred ccEEEEecCCc--EEEEEecC-CceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeec-C---------CeEEEEEc
Q 017553 49 FNVFATVGGNR--VTVYQCLE-GGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI-N---------GIIRVIDV 115 (369)
Q Consensus 49 ~~~la~~~~~~--v~iw~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~-d---------g~i~vwd~ 115 (369)
+.+++.|+.+. +.+||+.+ ......+..... ....-.+++ . -++. +++.|+. + ..+.+||+
T Consensus 20 ~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~--~~R~~~~~~-~--~~~~-lyv~GG~~~~~~~~~~~~~~v~~yd~ 93 (357)
T 2uvk_A 20 DTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPG--GPRDQATSA-F--IDGN-LYVFGGIGKNSEGLTQVFNDVHKYNP 93 (357)
T ss_dssp TEEEEECGGGTTCEEEEETTSSSCCEEECCCCTT--CCCBSCEEE-E--ETTE-EEEECCEEECTTSCEEECCCEEEEET
T ss_pred CEEEEEeCcCCCeEEEEccccCCCCeeECCCCCC--CcCccceEE-E--ECCE-EEEEcCCCCCCCccceeeccEEEEeC
Confidence 57777777544 99999764 334444443220 111111122 2 3466 7777765 2 46889998
Q ss_pred CCccc--cceee-ccccceEEEEecCCCCceEEEEeCC---------------------------------------CcE
Q 017553 116 SNEKL--HKSFV-GHGDSINEIRTQPLKPSLVVSASKD---------------------------------------ESV 153 (369)
Q Consensus 116 ~~~~~--~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d---------------------------------------g~i 153 (369)
.+.+- +..+. .......++. . ++.+++.|+.+ ..+
T Consensus 94 ~~~~W~~~~~~~p~~r~~~~~~~--~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 170 (357)
T 2uvk_A 94 KTNSWVKLMSHAPMGMAGHVTFV--H-NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFL 170 (357)
T ss_dssp TTTEEEECSCCCSSCCSSEEEEE--E-TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEE
T ss_pred CCCcEEECCCCCCcccccceEEE--E-CCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccE
Confidence 77642 22222 1111112222 2 66788888764 578
Q ss_pred EEEEccCCcEEEEeeccCCCCCcE-EEEEecCCCceEEEEEeeC------CcEEEEEc
Q 017553 154 RLWNVQTGICILIFAGAGGHRNEV-LSVDFHPSDIYRIASCGMD------NTVKIWSM 204 (369)
Q Consensus 154 ~vwd~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~~~~~d------~~v~i~d~ 204 (369)
.+||+.+.+-...-... ....- .+++.. ++.+++.|+.+ ..+..||+
T Consensus 171 ~~yd~~~~~W~~~~~~p--~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~~d~ 224 (357)
T 2uvk_A 171 LSFDPSTQQWSYAGESP--WYGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVFELDF 224 (357)
T ss_dssp EEEETTTTEEEEEEECS--SCCCBSCEEEEE--TTEEEEECCEEETTEECCCEEEEEC
T ss_pred EEEeCCCCcEEECCCCC--CCCcccccEEEE--CCEEEEEeeecCCCcccCceEEEEe
Confidence 99999877644332211 11111 233333 56777777653 35666776
No 311
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.83 E-value=0.0088 Score=49.03 Aligned_cols=240 Identities=9% Similarity=-0.056 Sum_probs=118.5
Q ss_pred CcCeEEEEEeeccCCCccEEEEecCCcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEE
Q 017553 33 KRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRV 112 (369)
Q Consensus 33 ~~~v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~v 112 (369)
...+.+|.|.| +..++.+....|.. ....|+....+.... .....++.+.+. +++. +++++ .+|.|..
T Consensus 79 ~~~~~~i~~~~-----~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~--~~~~~~~~i~~~--~~~~-~~~~~-~~g~v~~ 146 (327)
T 2xbg_A 79 DYRFNSVSFQG-----NEGWIVGEPPIMLH-TTDGGQSWSQIPLDP--KLPGSPRLIKAL--GNGS-AEMIT-NVGAIYR 146 (327)
T ss_dssp CCEEEEEEEET-----TEEEEEEETTEEEE-ESSTTSSCEECCCCT--TCSSCEEEEEEE--ETTE-EEEEE-TTCCEEE
T ss_pred CccEEEEEecC-----CeEEEEECCCeEEE-ECCCCCCceECcccc--CCCCCeEEEEEE--CCCC-EEEEe-CCccEEE
Confidence 45689999976 45666554332322 323345444433210 122345666654 6665 55554 4564432
Q ss_pred EEcCCcccccee-eccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEE
Q 017553 113 IDVSNEKLHKSF-VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIA 191 (369)
Q Consensus 113 wd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 191 (369)
..+.++.-..+ ......+..+.+.| ++.+++.+ .+|.+..-+-..++.-..+.. .....+..+.+.+ ++.++
T Consensus 147 -S~DgG~tW~~~~~~~~~~~~~~~~~~-~~~~~~~g-~~G~~~~S~d~gG~tW~~~~~--~~~~~~~~~~~~~-~g~~~- 219 (327)
T 2xbg_A 147 -TKDSGKNWQALVQEAIGVMRNLNRSP-SGEYVAVS-SRGSFYSTWEPGQTAWEPHNR--TTSRRLHNMGFTP-DGRLW- 219 (327)
T ss_dssp -ESSTTSSEEEEECSCCCCEEEEEECT-TSCEEEEE-TTSSEEEEECTTCSSCEEEEC--CSSSCEEEEEECT-TSCEE-
T ss_pred -EcCCCCCCEEeecCCCcceEEEEEcC-CCcEEEEE-CCCcEEEEeCCCCCceeECCC--CCCCccceeEECC-CCCEE-
Confidence 22233322222 23455788999998 66666555 445554432111232222221 3556788999988 66644
Q ss_pred EEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee-CcEEEEeecCCeEEEecCCCC
Q 017553 192 SCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMK 270 (369)
Q Consensus 192 ~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~i~d~~~~ 270 (369)
.++.+|.+++.+...+... .... .+ . ..+...+.++.+. ...++.++.++.+. +....+
T Consensus 220 ~~~~~G~~~~s~~D~G~tW-------~~~~---------~~--~-~~~~~~~~~v~~~~~~~~~~~g~~g~i~-~S~DgG 279 (327)
T 2xbg_A 220 MIVNGGKIAFSDPDNSENW-------GELL---------SP--L-RRNSVGFLDLAYRTPNEVWLAGGAGALL-CSQDGG 279 (327)
T ss_dssp EEETTTEEEEEETTEEEEE-------CCCB---------CT--T-SSCCSCEEEEEESSSSCEEEEESTTCEE-EESSTT
T ss_pred EEeCCceEEEecCCCCCee-------Eecc---------CC--c-ccCCcceEEEEecCCCEEEEEeCCCeEE-EeCCCC
Confidence 4556787776642222111 0000 00 0 0112235666665 33444445567663 333333
Q ss_pred CCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEc
Q 017553 271 EQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL 320 (369)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~ 320 (369)
+ ....+.........+..+.|.+++ .+++++.+|.|.-++-
T Consensus 280 ~------tW~~~~~~~~~~~~~~~v~~~~~~---~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 280 Q------TWQQDVDVKKVPSNFYKILFFSPD---QGFILGQKGILLRYVT 320 (327)
T ss_dssp S------SCEECGGGTTSSSCCCEEEEEETT---EEEEECSTTEEEEECC
T ss_pred c------ccEEcCccCCCCCCeEEEEEECCC---ceEEEcCCceEEEEcC
Confidence 2 111122111123457788887655 4566677888777654
No 312
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.80 E-value=0.0094 Score=48.62 Aligned_cols=225 Identities=12% Similarity=0.099 Sum_probs=108.9
Q ss_pred EEEEeecCCeEEEEEcCCccccc-eeec-cccceEEEEecCCCCceEEEEeC----CC-------cEEEEEccCCcEEEE
Q 017553 100 FLVAGGINGIIRVIDVSNEKLHK-SFVG-HGDSINEIRTQPLKPSLVVSASK----DE-------SVRLWNVQTGICILI 166 (369)
Q Consensus 100 ~l~~~~~dg~i~vwd~~~~~~~~-~~~~-~~~~v~~~~~~~~~~~~l~s~~~----dg-------~i~vwd~~~~~~~~~ 166 (369)
+++.|+. .+..||..+.+-.. .+.. ....-.+++ .. ++.+++.|+. ++ .+..||..+++-..
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~-~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~- 92 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIV-TQ-QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVG- 92 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEE-CS-SSCEEEEESSCC-------CCCBEEEEEETTTTEEEE-
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEE-EE-CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEE-
Confidence 5556653 48899988776432 1111 111112233 23 5677788873 12 17788887765433
Q ss_pred eeccCCCCCcEEEEEecCCCceEEEEEeeC-------CcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccC
Q 017553 167 FAGAGGHRNEVLSVDFHPSDIYRIASCGMD-------NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH 239 (369)
Q Consensus 167 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (369)
+......... .+++.. ++.+++.|+.+ ..+.+||+.+..-..... . +. ....|
T Consensus 93 ~~~~p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~---------~-------p~-~r~~~ 152 (318)
T 2woz_A 93 LPPLPSARCL-FGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKN---------L-------PI-KVYGH 152 (318)
T ss_dssp CSCBSSCBCS-CEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECC---------C-------SS-CEESC
T ss_pred CCCCCccccc-cceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCC---------C-------CC-ccccc
Confidence 2211111111 223333 56788888765 247778877632111100 0 00 01111
Q ss_pred CCceeeeeeeCcEEEEeec------CCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCC-
Q 017553 240 SNYVDCNRWLGDFILSKSV------DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE- 312 (369)
Q Consensus 240 ~~~v~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~d- 312 (369)
.++...+.+++.|+. -..+.+||+.+.+ ...+..++..... .+++. .+++ +++.|+.+
T Consensus 153 ----~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~-------W~~~~~~p~~r~~-~~~~~-~~~~--iyv~GG~~~ 217 (318)
T 2woz_A 153 ----NVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGD-------WKDLAPMKTPRSM-FGVAI-HKGK--IVIAGGVTE 217 (318)
T ss_dssp ----EEEEETTEEEEECCEESSSCBCCCEEEEETTTTE-------EEEECCCSSCCBS-CEEEE-ETTE--EEEEEEEET
T ss_pred ----EEEEECCEEEEEcCCCCCCCccceEEEEcCCCCE-------EEECCCCCCCccc-ceEEE-ECCE--EEEEcCcCC
Confidence 122234666677664 2358889987753 1122222221111 12222 2443 55555432
Q ss_pred ----CeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecC--------------CeEEEEecCC
Q 017553 313 ----GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCED--------------GAIWRWDAIP 368 (369)
Q Consensus 313 ----g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d--------------g~i~vw~~~~ 368 (369)
..+.+||+.+.+...+..++ ........+. .++++++.|+.+ ..+.+||+++
T Consensus 218 ~~~~~~~~~yd~~~~~W~~~~~~p--~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~ 287 (318)
T 2woz_A 218 DGLSASVEAFDLKTNKWEVMTEFP--QERSSISLVS--LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDK 287 (318)
T ss_dssp TEEEEEEEEEETTTCCEEECCCCS--SCCBSCEEEE--ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTT
T ss_pred CCccceEEEEECCCCeEEECCCCC--CcccceEEEE--ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCC
Confidence 35788999887654443333 1112222222 256777887754 3477888765
No 313
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.79 E-value=0.0089 Score=47.95 Aligned_cols=259 Identities=10% Similarity=0.090 Sum_probs=145.1
Q ss_pred EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCC
Q 017553 60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPL 139 (369)
Q Consensus 60 v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 139 (369)
|.|.|+..+.....-+. ..+. . ..+|..+ ++|.-. ...++++|+++.+.++.+.- ...|.-=.|-.
T Consensus 51 VvIiDl~n~~~~~Rrpi----~Ads----A--IMnP~~~-ViALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis- 116 (365)
T 2xzh_A 51 VVIIDMNDPSNPIRRPI----SADS----A--IMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS- 116 (365)
T ss_dssp EEEEETTSTTSCEEEEC----CCSE----E--EECSSSS-EEEEEE-TTEEEEEETTTTEEEEEEEC-SSCEEEEEECS-
T ss_pred EEEEECCCCCCcccccc----ccce----e--eeCCCcc-EEEEec-CCeEEEechHHhhhhcceec-CCccEEEEecC-
Confidence 88999887665433221 1111 1 2247666 666655 67899999999888877764 35666667764
Q ss_pred CCceEEEEeCCCcEEEEEccC-CcEEEEeeccCC-CCCcEEEEEecCCCceEEEEEe-------eCCcEEEEEccCceee
Q 017553 140 KPSLVVSASKDESVRLWNVQT-GICILIFAGAGG-HRNEVLSVDFHPSDIYRIASCG-------MDNTVKIWSMKEFWTY 210 (369)
Q Consensus 140 ~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~-------~d~~v~i~d~~~~~~~ 210 (369)
.+.|+-.+. ..|+.|++.. ..+.+.+..... ....|..-..++ +.++++..+ -.|.+.+|..+..
T Consensus 117 -~~~L~lVT~-taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQLYS~er~--- 190 (365)
T 2xzh_A 117 -LNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRK--- 190 (365)
T ss_dssp -SSEEEEEES-SEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECT-TSCEEEEEEEEEETTEEEEEEEEEETTTT---
T ss_pred -CCeEEEEcC-CcEEEEcccCCCCCceeeecchhcccceEEEEEECC-CCCEEEEEeEeccCCccceeEEEEeeccc---
Confidence 345555444 5899999974 355555552111 134577777787 555444333 2367778887762
Q ss_pred eeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeeeCc-----EEEEeec---CCeEEEecCCCC-CCCCCCCccce
Q 017553 211 VEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGD-----FILSKSV---DNEIVLWEPKMK-EQSPGEGTADI 281 (369)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~l~~~~~---d~~i~i~d~~~~-~~~~~~~~~~~ 281 (369)
....+.+|......+...|+ +++.+.. .+.+++.++... ...+... .+.
T Consensus 191 ---------------------~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~-kk~ 248 (365)
T 2xzh_A 191 ---------------------VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP-KKA 248 (365)
T ss_dssp ---------------------EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCC-CEE
T ss_pred ---------------------ccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcc-ccc
Confidence 23344555554444444322 2332222 258999888543 1111110 001
Q ss_pred eeeccCC---CCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecC
Q 017553 282 LQKYPVP---ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCED 358 (369)
Q Consensus 282 ~~~~~~~---~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 358 (369)
+.-+..+ ..-..++..|+.. .++..-+.-|.|++||++++......++. ...|-..+-+.+..-++.-...
T Consensus 249 vdi~fppea~~DFPVamqvs~ky--gviyviTK~G~ihlyDleTgt~i~~nrIS----~d~iF~ta~~~~~~Gi~~Vnr~ 322 (365)
T 2xzh_A 249 VDVFFPPEAQNDFPVAMQISEKH--DVVFLITKYGYIHLYDLETGTCIYMNRIS----GETIFVTAPHEATAGIIGVNRK 322 (365)
T ss_dssp EEECCCTTCTTCCEEEEEEETTT--TEEEEEETTSEEEEEETTTCCEEEEEECC----SSCEEEEEEEGGGTEEEEEETT
T ss_pred ceeeCCccccCCceEEEEecccC--CEEEEEeCCcEEEEEEcccCcEEEEeccC----CCceEEecccCCCCcEEEEcCC
Confidence 1111111 2333455666554 48888889999999999999655544443 2345444444443344455567
Q ss_pred CeEEEEec
Q 017553 359 GAIWRWDA 366 (369)
Q Consensus 359 g~i~vw~~ 366 (369)
|.|.--.+
T Consensus 323 GqVl~v~v 330 (365)
T 2xzh_A 323 GQVLSVCV 330 (365)
T ss_dssp CEEEEEEE
T ss_pred CEEEEEEE
Confidence 76654443
No 314
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.59 E-value=0.046 Score=50.58 Aligned_cols=288 Identities=10% Similarity=0.067 Sum_probs=144.2
Q ss_pred cCeEEEEEeeccCCCccEEEEecCCcEEEEEecCCceeEEEeeecc-CCcccceeEEEeeecCCCccEEEEeecCCeEEE
Q 017553 34 RPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVD-EDKEESFYTVSWACNVDGIPFLVAGGINGIIRV 112 (369)
Q Consensus 34 ~~v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~v 112 (369)
..|.++...+ +|.+.+.. .+++..|+..++.. ..+..... ......|.++... .++. .|..|+. +-+..
T Consensus 146 ~~i~~i~~d~----~g~lWigt-~~Gl~~~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~d--~~~~-~lWigt~-~Gl~~ 215 (758)
T 3ott_A 146 NTIYSIIRTK----DNQIYVGT-YNGLCRYIPSNGKF-EGIPLPVHSSQSNLFVNSLLED--TTRQ-CVWIGTE-GYLFQ 215 (758)
T ss_dssp SCEEEEEECT----TCCEEEEE-TTEEEEEETTTTEE-EEECCCCCTTCSSCCEEEEEEE--TTTT-EEEEEEE-EEEEE
T ss_pred CeEEEEEEcC----CCCEEEEe-CCCHhhCccCCCce-EEecCCCccccccceeEEEEEE--CCCC-EEEEEEC-CCCeE
Confidence 4577777665 46666644 46788888665543 22211100 0012236666554 5555 5555654 45788
Q ss_pred EEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeecc----CCCCCcEEEEEecCCCce
Q 017553 113 IDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGA----GGHRNEVLSVDFHPSDIY 188 (369)
Q Consensus 113 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~ 188 (369)
+|..+++...........|.++...+ ++.+. .|+. +-+.+++..+++........ .-....|.++.... ++.
T Consensus 216 ~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lW-igT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~-~g~ 291 (758)
T 3ott_A 216 YFPSTGQIKQTEAFHNNSIKSLALDG-NGDLL-AGTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQ-EHN 291 (758)
T ss_dssp EETTTTEEEEEEEEEEEEEEEEEECT-TCCEE-EEET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECT-TCC
T ss_pred EcCCCCeEEeccCCCCCeEEEEEEcC-CCCEE-EEeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcC-CCC
Confidence 88766543221111234688888776 55544 4454 45788888766543322110 01234588888876 555
Q ss_pred EEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee-CcEEEEeecCCeEEEecC
Q 017553 189 RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEP 267 (369)
Q Consensus 189 ~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~i~d~ 267 (369)
|-.|+..| +.++.....-... . ............|.++..+ ...|..|+.+ -+..++.
T Consensus 292 -lWiGT~~G-l~~~~~~~~~~~~----~--------------~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~-Gl~~~~~ 350 (758)
T 3ott_A 292 -IWLGTDYG-ISLSRYNSALQFI----P--------------ISQITGTGDGNQFYSLFRDSKGFYWFGGAN-GLIRFTD 350 (758)
T ss_dssp -EEEEESSS-EEEECCCC-CEEE----E--------------HHHHSCSCCCCBEEEEEECTTCCEEEEETT-EEEEESC
T ss_pred -EEEEeCCc-ccccccCCceeEE----e--------------cccCCCCCCCceEEEEEEcCCCCEEEeeCC-cceeecc
Confidence 44455556 5444322100000 0 0000001123456777665 4455556654 4666766
Q ss_pred CCCCCCCCCCccceeee----ccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCC--CccceE
Q 017553 268 KMKEQSPGEGTADILQK----YPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQ--SKSPIR 341 (369)
Q Consensus 268 ~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~~~~v~ 341 (369)
.++..... ..... .......|.++.-..++. |..|+ ++-+..||..+++........... ....|.
T Consensus 351 ~~~~~~~~----~~~~~~~~~~~l~~~~v~~i~~d~~g~---lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 422 (758)
T 3ott_A 351 PAGERHDA----IWYRMGDKTYPLSHNRIRHIYEDKEQQ---LWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTY 422 (758)
T ss_dssp TTSSCCCC----EEECTTCSSSCCSCSCEEEEEECTTSC---EEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEE
T ss_pred ccccccee----EEeccCCcCCCCCCCceEEEEECCCCC---EEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEE
Confidence 54321100 00000 011224567776666663 55555 457999998876432222111101 224688
Q ss_pred EEEecCCCCEEEEeecCCeEEEEe
Q 017553 342 QTAMSYDGSTILSCCEDGAIWRWD 365 (369)
Q Consensus 342 ~~~~s~~~~~l~s~~~dg~i~vw~ 365 (369)
++...++|.+.+ |+..+-|.++|
T Consensus 423 ~i~~d~~g~lWi-gT~~~Gl~~~~ 445 (758)
T 3ott_A 423 YIFEDTAGQLWI-STCLGGIFVVD 445 (758)
T ss_dssp EEEECTTSEEEE-EESSSCEEEEE
T ss_pred EEEEcCCCCEEE-EECCCceEEEc
Confidence 888888876555 55544577666
No 315
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.54 E-value=0.027 Score=46.75 Aligned_cols=42 Identities=10% Similarity=-0.016 Sum_probs=23.8
Q ss_pred eEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecCC
Q 017553 314 KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDG 359 (369)
Q Consensus 314 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 359 (369)
.+.+||+.+.+...+..++.. ...-.++ ..++++++.|+.++
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~--r~~~~~~--~~~~~i~v~GG~~~ 327 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQG--RAYGVSL--PWNNSLLIIGGETA 327 (357)
T ss_dssp CCEEEECC---CEEEEECSSC--CBSSEEE--EETTEEEEEEEECG
T ss_pred eEEEEecCCCceeeCCCCCCC--cccceeE--EeCCEEEEEeeeCC
Confidence 578999998877666665522 2222222 24678888888653
No 316
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.54 E-value=0.029 Score=47.00 Aligned_cols=259 Identities=9% Similarity=0.058 Sum_probs=146.8
Q ss_pred EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCC
Q 017553 60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPL 139 (369)
Q Consensus 60 v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 139 (369)
|.|-|+..+..+..-+. .. =+-..+|..+ +++.=. ..+++++|+++.+.++.+.-. ..|.-=.|-.
T Consensus 50 vvIiDl~~~~~~~rrpi----~A------dsAIMnP~~~-iiALra-g~~lQiFnle~K~klks~~~~-e~VvfWkWis- 115 (494)
T 1bpo_A 50 VVIIDMNDPSNPIRRPI----SA------DSAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWIS- 115 (494)
T ss_dssp EEEEETTSTTSCEEEEC----CC------SEEEECSSSS-CEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEEEE-
T ss_pred EEEEECCCCCcceeccc----cc------ceeeeCCCCc-EEEEec-CCeEEEEchHHhhhhcceecC-CCceEEEecC-
Confidence 99999887665433221 01 1112336666 666554 679999999998887777644 4455556653
Q ss_pred CCceEEEEeCCCcEEEEEccC-CcEEEEeeccCC-CCCcEEEEEecCCCceEEE-EEe------eCCcEEEEEccCceee
Q 017553 140 KPSLVVSASKDESVRLWNVQT-GICILIFAGAGG-HRNEVLSVDFHPSDIYRIA-SCG------MDNTVKIWSMKEFWTY 210 (369)
Q Consensus 140 ~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~-~~~------~d~~v~i~d~~~~~~~ 210 (369)
.+.|+-.+. ..|+.|++.. ..+.+.+..... ....|..-..++ +.++++ +|- -.|.+.+|..+..
T Consensus 116 -~~~l~lVT~-taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQLYS~er~--- 189 (494)
T 1bpo_A 116 -LNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRK--- 189 (494)
T ss_dssp -TTEEEEECS-SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECT-TSSEEEEEEEEEETTEEEEEEEEEESTTC---
T ss_pred -CCeEEEEcC-CeeEEecccCCCCchhheecchhcccceEEEEEECC-CCCeEEEEeecccCCcccceEEEeecccc---
Confidence 345555443 6899999974 345566652110 134577777788 555544 332 2467788887762
Q ss_pred eeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeeeCc-----EEEEeec---CCeEEEecCCCC-CCCCCCCccce
Q 017553 211 VEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGD-----FILSKSV---DNEIVLWEPKMK-EQSPGEGTADI 281 (369)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~l~~~~~---d~~i~i~d~~~~-~~~~~~~~~~~ 281 (369)
....+.+|......+...|+ .++.+.. .+.+++.++... ...+.... +.
T Consensus 190 ---------------------~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~k-k~ 247 (494)
T 1bpo_A 190 ---------------------VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPK-KA 247 (494)
T ss_dssp ---------------------CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCC-EE
T ss_pred ---------------------ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccc-ee
Confidence 23445566555544444422 3333333 278999998554 11111100 01
Q ss_pred eeeccC---CCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEeecC
Q 017553 282 LQKYPV---PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCED 358 (369)
Q Consensus 282 ~~~~~~---~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 358 (369)
+..+-. ...-..++..|+... ++..-+.-|.|++||+.++......++. ...|-.-+-+....-++.....
T Consensus 248 vdv~fppe~~~DFPvamqvs~kyg--viyviTK~G~i~lyDleTgt~i~~nrIs----~~~iF~t~~~~~~~Gi~~Vnr~ 321 (494)
T 1bpo_A 248 VDVFFPPEAQNDFPVAMQISEKHD--VVFLITKYGYIHLYDLETGTCIYMNRIS----GETIFVTAPHEATAGIIGVNRK 321 (494)
T ss_dssp EECCCCTTSTTCCEEEEEEETTTT--EEEEEETTSEEEEEETTTCCEEEEEECC----SSCEEEEEEETTTTEEEEEETT
T ss_pred eeeeCCcccccCceeEEEecccCC--EEEEEecCceEEEEecccceeeeeeccc----CCceEEecccCCCCcEEEEccC
Confidence 111111 122334566666554 7888889999999999999655544443 2355444444444445555577
Q ss_pred CeEEEEec
Q 017553 359 GAIWRWDA 366 (369)
Q Consensus 359 g~i~vw~~ 366 (369)
|.|.--.+
T Consensus 322 GqVl~v~v 329 (494)
T 1bpo_A 322 GQVLSVCV 329 (494)
T ss_dssp CEEEEEEE
T ss_pred ceEEEEEE
Confidence 76654433
No 317
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.39 E-value=0.038 Score=44.94 Aligned_cols=142 Identities=13% Similarity=0.077 Sum_probs=69.4
Q ss_pred EEEEecCCcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeec----CC-------eEEEEEcCCcc
Q 017553 51 VFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGI----NG-------IIRVIDVSNEK 119 (369)
Q Consensus 51 ~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~----dg-------~i~vwd~~~~~ 119 (369)
+++.|+ ..+..||..+++-.. .. ...+ ....-.++ .. .++. +++.|+. ++ .+.+||..+.+
T Consensus 18 i~~~GG-~~~~~yd~~~~~W~~-~~-~~~~-~~r~~~~~-~~--~~~~-lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~ 89 (318)
T 2woz_A 18 ILLVND-TAAVAYDPMENECYL-TA-LAEQ-IPRNHSSI-VT--QQNQ-VYVVGGLYVDEENKDQPLQSYFFQLDNVSSE 89 (318)
T ss_dssp EEEECS-SEEEEEETTTTEEEE-EE-ECTT-SCSSEEEE-EC--SSSC-EEEEESSCC-------CCCBEEEEEETTTTE
T ss_pred hhhccc-cceEEECCCCCceec-cc-CCcc-CCccceEE-EE--ECCE-EEEECCcccCccccCCCccccEEEEeCCCCc
Confidence 344443 458899987766333 22 1110 11111122 22 4566 7777773 12 27788877654
Q ss_pred c--cceeeccccceEEEEecCCCCceEEEEeCC-------CcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEE
Q 017553 120 L--HKSFVGHGDSINEIRTQPLKPSLVVSASKD-------ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRI 190 (369)
Q Consensus 120 ~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 190 (369)
- +..+.........+.+ ++.+++.|+.+ ..+.+||+.+.+-...-. ....... .+++.. ++.++
T Consensus 90 W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~-~~~~~~--~~~iy 162 (318)
T 2woz_A 90 WVGLPPLPSARCLFGLGEV---DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKN-LPIKVYG-HNVISH--NGMIY 162 (318)
T ss_dssp EEECSCBSSCBCSCEEEEE---TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECC-CSSCEES-CEEEEE--TTEEE
T ss_pred EEECCCCCccccccceEEE---CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCC-CCCcccc-cEEEEE--CCEEE
Confidence 2 2222211111122222 45677777754 357888988765443221 1111111 122222 67778
Q ss_pred EEEeeC------CcEEEEEccCc
Q 017553 191 ASCGMD------NTVKIWSMKEF 207 (369)
Q Consensus 191 ~~~~~d------~~v~i~d~~~~ 207 (369)
+.|+.+ ..+.+||+.+.
T Consensus 163 v~GG~~~~~~~~~~~~~yd~~~~ 185 (318)
T 2woz_A 163 CLGGKTDDKKCTNRVFIYNPKKG 185 (318)
T ss_dssp EECCEESSSCBCCCEEEEETTTT
T ss_pred EEcCCCCCCCccceEEEEcCCCC
Confidence 887752 35888998874
No 318
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.38 E-value=0.043 Score=45.41 Aligned_cols=101 Identities=14% Similarity=0.174 Sum_probs=56.2
Q ss_pred eEEEeeecCCCccEEEEeecCCeEEEEEcCCcc--ccceee---ccccceEEEEecCC---CCceEEEEeCC-----CcE
Q 017553 87 YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK--LHKSFV---GHGDSINEIRTQPL---KPSLVVSASKD-----ESV 153 (369)
Q Consensus 87 ~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~--~~~~~~---~~~~~v~~~~~~~~---~~~~l~s~~~d-----g~i 153 (369)
..++|. |+|+ +++ +..+|.|++++ +++ .+..+. ........|+++|+ ++.+.++-... +.|
T Consensus 34 ~~ia~~--pdG~-l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 34 WALAFL--PDGG-MLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp EEEEEC--TTSC-EEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred eEEEEc--CCCe-EEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 346666 9998 544 45669999998 333 122111 12346789999993 24444444432 578
Q ss_pred EEEEccCCcE---EEEeeccC---CCCCcEEEEEecCCCceEEEEEe
Q 017553 154 RLWNVQTGIC---ILIFAGAG---GHRNEVLSVDFHPSDIYRIASCG 194 (369)
Q Consensus 154 ~vwd~~~~~~---~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~ 194 (369)
..++...+.. ...+.... +.......++|.| ++.++++.+
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G 153 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTTG 153 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEECC
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEEC
Confidence 8888764421 11111111 1112235899999 777666654
No 319
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.34 E-value=0.041 Score=44.22 Aligned_cols=242 Identities=13% Similarity=0.107 Sum_probs=137.6
Q ss_pred EEeeccCCCccEEEEecCCcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCc-
Q 017553 40 VFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE- 118 (369)
Q Consensus 40 ~~s~~~~~~~~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~- 118 (369)
-.+| ..+.+|.-....+.|+|+++...++... ..+.|.--.|. .+. .|+..+. ..|+-|++...
T Consensus 73 IMnP----~~~ViALrag~~LQiFnletK~klks~~------~~e~VvfWkWi--s~~--~L~lVT~-taVyHWs~~~~s 137 (365)
T 2xzh_A 73 IMNP----ASKVIALKAGKTLQIFNIEMKSKMKAHT------MTDDVTFWKWI--SLN--TVALVTD-NAVYHWSMEGES 137 (365)
T ss_dssp EECS----SSSEEEEEETTEEEEEETTTTEEEEEEE------CSSCEEEEEEC--SSS--EEEEEES-SEEEEEESSTTC
T ss_pred eeCC----CccEEEEecCCeEEEechHHhhhhccee------cCCccEEEEec--CCC--eEEEEcC-CcEEEEcccCCC
Confidence 3467 4678887775559999999988877765 23455545554 554 4555553 47999999743
Q ss_pred cccceeeccc----cceEEEEecCCCCceEEEEe-------CCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEec--CC
Q 017553 119 KLHKSFVGHG----DSINEIRTQPLKPSLVVSAS-------KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFH--PS 185 (369)
Q Consensus 119 ~~~~~~~~~~----~~v~~~~~~~~~~~~l~s~~-------~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~ 185 (369)
.+.+.+..|. ..|.....++ +.+.++..+ -.|.+.+|..+.+ ..+.++ +|......+.+. +.
T Consensus 138 ~P~kvFdR~~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ie---Ghaa~F~~~~~~g~~~ 212 (365)
T 2xzh_A 138 QPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIE---GHAASFAQFKMEGNAE 212 (365)
T ss_dssp CCEEEEECCGGGTTCEEEEEEECT-TSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEEC---CSEEEEEEECCTTCSS
T ss_pred CCceeeecchhcccceEEEEEECC-CCCEEEEEeEeccCCccceeEEEEeeccc-ccceee---eeeeeeEEEecCCCCC
Confidence 4555555443 4677777788 555444332 2478889998654 445555 676655444442 21
Q ss_pred CceEEEEEeeC---CcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCC
Q 017553 186 DIYRIASCGMD---NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDN 260 (369)
Q Consensus 186 ~~~~l~~~~~d---~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~ 260 (369)
...+++.+... +++++.++..... ....+..+... ....-....+...++..+ -..+..-+.-|
T Consensus 213 ~~~lf~fa~r~~~g~kLhIiEi~~~~~----------~~~~f~kk~vd-i~fppea~~DFPVamqvs~kygviyviTK~G 281 (365)
T 2xzh_A 213 ESTLFCFAVRGQAGGKLHIIEVGTPPT----------GNQPFPKKAVD-VFFPPEAQNDFPVAMQISEKHDVVFLITKYG 281 (365)
T ss_dssp CEEEEEEEEEETTEEEEEEEECSSCCT----------TCCCCCCEEEE-ECCCTTCTTCCEEEEEEETTTTEEEEEETTS
T ss_pred CceEEEEEEecCCCcEEEEEEcCCCCC----------CCCCcccccce-eeCCccccCCceEEEEecccCCEEEEEeCCc
Confidence 22344444432 5788888754200 00001000000 000111223444556665 45777788999
Q ss_pred eEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCC
Q 017553 261 EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 323 (369)
Q Consensus 261 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~ 323 (369)
.+++||+.++. ++..-+.....|...+...... =++.....|.|.-..++..
T Consensus 282 ~ihlyDleTgt---------~i~~nrIS~d~iF~ta~~~~~~--Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 282 YIHLYDLETGT---------CIYMNRISGETIFVTAPHEATA--GIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp EEEEEETTTCC---------EEEEEECCSSCEEEEEEEGGGT--EEEEEETTCEEEEEEECTT
T ss_pred EEEEEEcccCc---------EEEEeccCCCceEEecccCCCC--cEEEEcCCCEEEEEEECcc
Confidence 99999999987 5555444455555444443332 2444446676666655544
No 320
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.34 E-value=0.047 Score=52.95 Aligned_cols=227 Identities=8% Similarity=0.041 Sum_probs=120.3
Q ss_pred EEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCC
Q 017553 60 VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPL 139 (369)
Q Consensus 60 v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 139 (369)
|.|-|+..+..+..- ++.+=+-..+|..+ +++.=. ..+++|+|+++...++.+.- ...|.-=.|-.
T Consensus 50 vvIidl~~~~~~~rr----------pi~AdsAIMnP~~~-iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis- 115 (1630)
T 1xi4_A 50 VVIIDMNDPSNPIRR----------PISADSAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS- 115 (1630)
T ss_pred EEEEECCCCCCcccc----------cccchhhccCCCcc-eEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecC-
Confidence 888888776543221 12222222346665 665554 67999999998887777764 34565566654
Q ss_pred CCceEEEEeCCCcEEEEEccCC-cEEEEeeccC-CCCCcEEEEEecCCCceEEEEEe-------eCCcEEEEEccCceee
Q 017553 140 KPSLVVSASKDESVRLWNVQTG-ICILIFAGAG-GHRNEVLSVDFHPSDIYRIASCG-------MDNTVKIWSMKEFWTY 210 (369)
Q Consensus 140 ~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~-------~d~~v~i~d~~~~~~~ 210 (369)
.+.|+-.+. ..|..|++... .+...+.... -....|..-..++ +.++++..| -.|.+.+|..+...
T Consensus 116 -~~~l~lVT~-~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~-~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-- 190 (1630)
T 1xi4_A 116 -LNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRKV-- 190 (1630)
T ss_pred -CCeeEEEcC-CeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCC-CCCeEEEEeeccCCCcccceeeeeeccccc--
Confidence 344444443 57999999642 3333333100 0134566667777 555544332 34677888777621
Q ss_pred eeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee----C-cEEEEeec---CCeEEEecCCCC-CCCCCCCccce
Q 017553 211 VEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL----G-DFILSKSV---DNEIVLWEPKMK-EQSPGEGTADI 281 (369)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~-~~l~~~~~---d~~i~i~d~~~~-~~~~~~~~~~~ 281 (369)
...+.+|......+... + ..++.+.. .+.++|.++... ...+.... +.
T Consensus 191 ----------------------sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~k-k~ 247 (1630)
T 1xi4_A 191 ----------------------SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPK-KA 247 (1630)
T ss_pred ----------------------chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCcc-cc
Confidence 12233333333222222 1 12221111 268888888553 11110000 01
Q ss_pred eeeccC---CCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEE
Q 017553 282 LQKYPV---PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR 330 (369)
Q Consensus 282 ~~~~~~---~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 330 (369)
+..+.. ...-..++..|+... ++..-+.-|.|++||+.++......+
T Consensus 248 ~~~~~~~~~~~Dfpv~~~vs~k~g--~iy~itk~G~~~~~d~~t~~~i~~~r 297 (1630)
T 1xi4_A 248 VDVFFPPEAQNDFPVAMQISEKHD--VVFLITKYGYIHLYDLETGTCIYMNR 297 (1630)
T ss_pred ccccCCcccccCcceEEEeccccC--EEEEEecCceEEEEecccchhhhhcc
Confidence 111111 112233455565544 77788899999999999986544433
No 321
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.26 E-value=0.16 Score=49.20 Aligned_cols=136 Identities=10% Similarity=0.038 Sum_probs=79.6
Q ss_pred cEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCcccccee-eccccceEEEEec
Q 017553 59 RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSF-VGHGDSINEIRTQ 137 (369)
Q Consensus 59 ~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~ 137 (369)
+|++.+......+..+.. .....|...+.. +. +++.+. ++.+.++++.+++..... ..-...|.|+++.
T Consensus 493 ~Irli~~~~~~~~~~w~~----p~~~~I~~As~n----~~-~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~ 562 (1158)
T 3ei3_A 493 SVRLVSQEPKALVSEWKE----PQAKNISVASCN----SS-QVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDIT 562 (1158)
T ss_dssp CEEEEESSSCCEEEEECC----TTCCCCCEEEEC----SS-EEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECC
T ss_pred EEEEEECCCCeEEEEEEC----CCCCEEEEEEeC----CC-EEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEee
Confidence 456666444333333321 223345444432 23 455554 678888888765322111 1235689999998
Q ss_pred CCC-----CceEEEEeC-CCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecC-CCceEEEEEeeCCcEEEEEccC
Q 017553 138 PLK-----PSLVVSASK-DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHP-SDIYRIASCGMDNTVKIWSMKE 206 (369)
Q Consensus 138 ~~~-----~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d~~v~i~d~~~ 206 (369)
|.. ..+++.|.. |++|+|+++.+.+.+..... +......++.+.. .+..+|..|-.||.+.-+.++.
T Consensus 563 ~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L--~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~ 636 (1158)
T 3ei3_A 563 PLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEML--GGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNI 636 (1158)
T ss_dssp CCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEEC--CSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECT
T ss_pred cCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEEC--CCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcC
Confidence 632 368888886 99999999987766644331 1122344444321 1456788888999887776654
No 322
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.18 E-value=0.076 Score=43.95 Aligned_cols=105 Identities=11% Similarity=0.087 Sum_probs=58.1
Q ss_pred cCeEEEEEeeccCCCccEEEEecCCcEEEEEecCCceeEEEeeec-cCCcccceeEEEeeecCC---CccEEEEeecC--
Q 017553 34 RPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYV-DEDKEESFYTVSWACNVD---GIPFLVAGGIN-- 107 (369)
Q Consensus 34 ~~v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~---g~~~l~~~~~d-- 107 (369)
..-..++|.| +|.++++-..+.|.+++ +++ ...+.... ..........+++. |+ +..+.++-...
T Consensus 31 ~~P~~ia~~p----dG~l~V~e~~g~I~~i~--~g~-~~~~~~~~v~~~g~~~p~gia~~--pdf~~~g~lYv~~~~~~~ 101 (352)
T 2ism_A 31 EVPWALAFLP----DGGMLIAERPGRIRLFR--EGR-LSTYAELSVYHRGESGLLGLALH--PRFPQEPYVYAYRTVAEG 101 (352)
T ss_dssp SCEEEEEECT----TSCEEEEETTTEEEEEE--TTE-EEEEEECCCCCSTTCSEEEEEEC--TTTTTSCEEEEEEEECTT
T ss_pred CCceEEEEcC----CCeEEEEeCCCeEEEEE--CCC-ccEeecceEeecCCCCceeEEEC--CCCCCCCEEEEEEecCCC
Confidence 3567999999 68877776665588888 443 22222111 11123456667776 87 44144443332
Q ss_pred ---CeEEEEEcCCcc-----c-cceee---ccccceEEEEecCCCCceEEEEe
Q 017553 108 ---GIIRVIDVSNEK-----L-HKSFV---GHGDSINEIRTQPLKPSLVVSAS 148 (369)
Q Consensus 108 ---g~i~vwd~~~~~-----~-~~~~~---~~~~~v~~~~~~~~~~~~l~s~~ 148 (369)
+.|..++...++ . +..+. +.......++|.| ++.+.++.+
T Consensus 102 ~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G 153 (352)
T 2ism_A 102 GLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTTG 153 (352)
T ss_dssp SSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEECC
T ss_pred CCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEEC
Confidence 578888876431 1 11122 1111336899999 777666643
No 323
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.14 E-value=0.072 Score=43.06 Aligned_cols=175 Identities=9% Similarity=-0.036 Sum_probs=97.7
Q ss_pred cceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeecc----CCCCCcEEEEEe---cCCCceEEEEEee------
Q 017553 129 DSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGA----GGHRNEVLSVDF---HPSDIYRIASCGM------ 195 (369)
Q Consensus 129 ~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~----~~~~~~v~~~~~---~~~~~~~l~~~~~------ 195 (369)
-...+++|++.++.++++.-..++|..||...+......... ......+..+.| .| +++++++...
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFNF 91 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTCT
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEcccccccc
Confidence 344578898844545555447899999999766544332110 001124689999 68 6777775432
Q ss_pred -------CCcEEEEEcc---CceeeeeeeeeccCCCCCCCCceeecceeeecc-CCCceeeeeee--CcEEEEeecC-Ce
Q 017553 196 -------DNTVKIWSMK---EFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV-HSNYVDCNRWL--GDFILSKSVD-NE 261 (369)
Q Consensus 196 -------d~~v~i~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~--~~~l~~~~~d-~~ 261 (369)
+..|..||+. +++......+.. .........+ -......++.+ |+..++++.. +.
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~-----------~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~ 160 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEK-----------VQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPA 160 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCCSEEEESHH-----------HHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCE
T ss_pred cccccCCCCEEEEEcCCcCCCCCEEEEecCcc-----------ccccccccccccccCCceeEECCCCCEEEeCCCCCCe
Confidence 5779999998 532211110000 0000000000 11235556665 7777777777 77
Q ss_pred EEEecCCCCCCCCCCCccceeeec--cCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCC
Q 017553 262 IVLWEPKMKEQSPGEGTADILQKY--PVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 323 (369)
Q Consensus 262 i~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~ 323 (369)
|..++........ ..... .......+.+++.|++. .|++....|.+..+|+...
T Consensus 161 I~rV~pdG~~~~~------~~~~~~~~~~~~G~nGIv~~pdg~--~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 161 IARVSADGKTVST------FAWESGNGGQRPGYSGITFDPHSN--KLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp EEEECTTSCCEEE------EEECCCCSSSCCSCSEEEEETTTT--EEEEESSSSSEEEEECSSS
T ss_pred EEEEeCCCCEEee------eeecCCCcccccCcceEEEeCCCC--EEEEEcCCCeEEEEcCCCC
Confidence 7777766432100 00011 11224467899999997 5555544999999999853
No 324
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.14 E-value=0.16 Score=47.01 Aligned_cols=238 Identities=12% Similarity=0.028 Sum_probs=122.5
Q ss_pred cCeEEEEEeeccCCCccEEEEecCCcEEEEEecCCceeEEEeeeccC--CcccceeEEEeeecCCCccEEEEeecCCeEE
Q 017553 34 RPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDE--DKEESFYTVSWACNVDGIPFLVAGGINGIIR 111 (369)
Q Consensus 34 ~~v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~ 111 (369)
..|.++.-.+ +|.+.+.. .+++..|+..+++.. .+...... .....|.++.-. .+|. |-.|+..+-|.
T Consensus 373 ~~v~~i~~d~----~g~lWigt-~~GL~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~i~~d--~~g~--lWigT~~~Gl~ 442 (758)
T 3ott_A 373 NRIRHIYEDK----EQQLWIAT-DGSINRYDYATRQFI-HYNIVDNTGTYNTNWTYYIFED--TAGQ--LWISTCLGGIF 442 (758)
T ss_dssp SCEEEEEECT----TSCEEEEE-TTEEEEEETTTTEEE-EEEEECCC--CBSSSEEEEEEC--TTSE--EEEEESSSCEE
T ss_pred CceEEEEECC----CCCEEEEe-CCcHhhcCcCCCcEE-EeecCCCcCCCCCceEEEEEEc--CCCC--EEEEECCCceE
Confidence 3578887655 46666654 567999997766432 22211100 022346666544 6665 66677666688
Q ss_pred EEEcCCc-----ccc---ceeec----cccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEE
Q 017553 112 VIDVSNE-----KLH---KSFVG----HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLS 179 (369)
Q Consensus 112 vwd~~~~-----~~~---~~~~~----~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~ 179 (369)
++|..+. ... ..+.. ....|.++...+ ++.+.+.++..+-|..+|..+++..............+.+
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~ 521 (758)
T 3ott_A 443 VVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDN-EGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNY 521 (758)
T ss_dssp EEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECT-TSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEE
T ss_pred EEccccccccCCcceecccccccccccccceeeeEEEcC-CCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccce
Confidence 8885431 111 11111 123588888887 6666653344456888998876544332110011346778
Q ss_pred EEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeeeCcEEEEeecC
Q 017553 180 VDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVD 259 (369)
Q Consensus 180 ~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d 259 (369)
+.... ++.+.+ |+.. -+..+|..+..... + . ........|.++..+...|..++..
T Consensus 522 i~~d~-~g~lWi-gt~~-Gl~~~~~~~~~~~~---~----------------~--~~gl~~~~i~~i~~~~g~lWi~t~~ 577 (758)
T 3ott_A 522 LLCDE-DGLLWV-GFHG-GVMRINPKDESQQS---I----------------S--FGSFSNNEILSMTCVKNSIWVSTTN 577 (758)
T ss_dssp EEECT-TSCEEE-EETT-EEEEECC--CCCCB---C----------------C--CCC---CCEEEEEEETTEEEEEESS
T ss_pred EEECC-CCCEEE-EecC-ceEEEecCCCceEE---e----------------c--ccCCCccceEEEEECCCCEEEECCC
Confidence 88776 666554 4444 47778766521100 0 0 0001123456665554456665655
Q ss_pred CeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEe-ecCCccEEEEecCCCeEEEEEcc
Q 017553 260 NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFS-CDFHYNAAAIGNREGKIFVWELQ 321 (369)
Q Consensus 260 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~~~~l~~~~~dg~i~i~d~~ 321 (369)
| +..+|..+.+. ..+......+....+. ++| .|..|+.+|- ..++..
T Consensus 578 G-l~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~G---~l~fG~~~Gl-~~f~p~ 625 (758)
T 3ott_A 578 G-LWIIDRKTMDA----------RQQNMTNKRFTSLLFDPKED---CVYLGGADGF-GISHSN 625 (758)
T ss_dssp C-EEEEETTTCCE----------EEC--CCCCCSEEEEETTTT---EEEEECBSEE-EEEEC-
T ss_pred C-eEEEcCCCcee----------EEecCCCCceeeeEEECCCC---cEEEecCCce-EEEChh
Confidence 5 77778776542 2222222233334443 355 6777888874 445544
No 325
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.09 E-value=0.093 Score=43.45 Aligned_cols=64 Identities=11% Similarity=-0.003 Sum_probs=40.9
Q ss_pred CCeeEEEEe-------ecCCccEEEEecCCCeEEEEEccCC-CceeEEEeecCCCccceEEEEecCCCCEEEEee
Q 017553 290 CDIWFIKFS-------CDFHYNAAAIGNREGKIFVWELQSS-PPVLIARLSHAQSKSPIRQTAMSYDGSTILSCC 356 (369)
Q Consensus 290 ~~i~~~~~s-------~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 356 (369)
.....++|. .++ .++++....+.|...++... +......+.. +....+..+++.|||.++++..
T Consensus 259 ~ap~G~~~y~g~~fp~~~G--~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~-~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGLRG--WLLIACLRGSMLAAVNFGDNMEVRKISTFFK-NVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CCEEEEEECCSSSCGGGTT--EEEEEETTTTEEEEEEECGGGCEEEEEEECT-TTSCCEEEEEECTTSCEEEEEC
T ss_pred cCCcceEEECCCCCcccCC--cEEEEEcCCCEEEEEEECCCCcccceeeecc-CCCCCeeEEEECCCCcEEEEEe
Confidence 456677774 334 46666667788999998753 2211222221 2245789999999998777664
No 326
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.07 E-value=0.091 Score=42.90 Aligned_cols=114 Identities=12% Similarity=0.062 Sum_probs=71.5
Q ss_pred EEEEeecCCeEEEEEcCCccccceeecc-ccceEEEEec--CCCCceEEEE-eCCCcEEEEEccCCcEEEEeeccC-CCC
Q 017553 100 FLVAGGINGIIRVIDVSNEKLHKSFVGH-GDSINEIRTQ--PLKPSLVVSA-SKDESVRLWNVQTGICILIFAGAG-GHR 174 (369)
Q Consensus 100 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~--~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~-~~~ 174 (369)
+++.++.||.|+-+|..+|+...++... ..++....-. +.++..++.. +.||.|..++..+|.....+.... -..
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~ 91 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVST 91 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceec
Confidence 7899999999999999999988888754 1222222111 1122344443 689999999998886655444210 011
Q ss_pred CcEEEEEecC--------CCceEEEEEeeCCcEEEEEccCceeeeeee
Q 017553 175 NEVLSVDFHP--------SDIYRIASCGMDNTVKIWSMKEFWTYVEKS 214 (369)
Q Consensus 175 ~~v~~~~~~~--------~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~ 214 (369)
.++.. .-.| ..+..+++|+.+|++...|+++++...+..
T Consensus 92 SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~ 138 (339)
T 2be1_A 92 SPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFG 138 (339)
T ss_dssp CSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEES
T ss_pred ccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence 12221 1000 034678899999999999999977655443
No 327
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.04 E-value=0.093 Score=43.95 Aligned_cols=148 Identities=14% Similarity=0.153 Sum_probs=93.1
Q ss_pred CccEEEEecCCcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccc-------
Q 017553 48 YFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL------- 120 (369)
Q Consensus 48 ~~~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~------- 120 (369)
+|..++.+.++.||.-++..+...+.+.... ...-..+..+..+ |+|. +||..+ +..|.|-.+..+..
T Consensus 31 n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~-~i~f~~i~qlvlS--psG~-lLAl~g-~~~V~Vv~LP~~~~~~~~~~~ 105 (452)
T 3pbp_A 31 NGTRIVFIQDNIIRWYNVLTDSLYHSLNFSR-HLVLDDTFHVISS--TSGD-LLCLFN-DNEIFVMEVPWGYSNVEDVSI 105 (452)
T ss_dssp TTTEEEEEETTEEEEEETTTCSSCEEEECTT-TCCCCTTCEEEEC--TTSS-EEEEEC-SSEEEEEECCTTCSCCCCHHH
T ss_pred CCCEEEEEECCEEEEEECCCCCcceEEecCc-ccccCceeEEEEC--CCCC-EEEEec-CCeEEEEEecCccccCccccc
Confidence 4666777766668888876554444444210 0012245556666 9999 777776 45899998873320
Q ss_pred -----cceeec------cccceEEEEecCCC--CceEEEEeCCCcEEEEEccCC--cEEEEeec------cCCCCCcEEE
Q 017553 121 -----HKSFVG------HGDSINEIRTQPLK--PSLVVSASKDESVRLWNVQTG--ICILIFAG------AGGHRNEVLS 179 (369)
Q Consensus 121 -----~~~~~~------~~~~v~~~~~~~~~--~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~------~~~~~~~v~~ 179 (369)
.+.+.- ...+|..+.|+|.. +..|++-..|+.|++||+... ++. .+.. .......|.+
T Consensus 106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S 184 (452)
T 3pbp_A 106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITD 184 (452)
T ss_dssp HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEE
T ss_pred ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEE
Confidence 112221 24679999999953 348999999999999999752 222 2321 1123367889
Q ss_pred EEecCCCceEEEEEe--eCCcEEEE
Q 017553 180 VDFHPSDIYRIASCG--MDNTVKIW 202 (369)
Q Consensus 180 ~~~~~~~~~~l~~~~--~d~~v~i~ 202 (369)
++|.+ ++-.|...+ ..|-|+-.
T Consensus 185 ~~Fg~-~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 185 LEFSK-DGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEECT-TSSCEEEEECTTSCEEEEE
T ss_pred EEEcC-CCcEEEEEecCCCCCEEEE
Confidence 99998 777777755 66777654
No 328
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.89 E-value=0.063 Score=44.93 Aligned_cols=167 Identities=14% Similarity=0.060 Sum_probs=92.1
Q ss_pred CCceEEEEeCCCcEEEEEccCCcEEEEeeccC-CCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeecc
Q 017553 140 KPSLVVSASKDESVRLWNVQTGICILIFAGAG-GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWT 218 (369)
Q Consensus 140 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~ 218 (369)
++..++.+- ++.||.-++..+..-+.+.... -.-..|..+..+| +|.+|+..+ +..|.+..+..+....... ..
T Consensus 31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~-~~- 105 (452)
T 3pbp_A 31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVEDV-SI- 105 (452)
T ss_dssp TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCCH-HH-
T ss_pred CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCccc-cc-
Confidence 344444433 3677877776444444444210 0122577899999 888888776 5689998887421111000 00
Q ss_pred CCCCCCCCceeecceeee----ccCCCceeeeeee-----CcEEEEeecCCeEEEecCCCCCCCCC-CCccceeeeccCC
Q 017553 219 DLPSKFPTKYVQFPVFIA----SVHSNYVDCNRWL-----GDFILSKSVDNEIVLWEPKMKEQSPG-EGTADILQKYPVP 288 (369)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~-----~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~ 288 (369)
....+.....+ ......|..+.|+ +..|++-..|+.|++||+......+. .............
T Consensus 106 -------~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~ 178 (452)
T 3pbp_A 106 -------QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDAR 178 (452)
T ss_dssp -------HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSS
T ss_pred -------ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcc
Confidence 00000000011 1134667888886 66899999999999999987432221 0000000112223
Q ss_pred CCCeeEEEEeecCCccEEEEecCCCeEEEE
Q 017553 289 ECDIWFIKFSCDFHYNAAAIGNREGKIFVW 318 (369)
Q Consensus 289 ~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~ 318 (369)
...+.+++|..++=..++++.+..|.|+-.
T Consensus 179 ~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 179 VNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp CCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred cceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 367889999997643444456688888764
No 329
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.68 E-value=0.21 Score=41.18 Aligned_cols=64 Identities=17% Similarity=0.086 Sum_probs=43.1
Q ss_pred CeeEEEEeecCCccEEEEecCCCeEEEEEccC-CCceeEEEeecCCCccceEEEEecC-CCCEEEEeecC
Q 017553 291 DIWFIKFSCDFHYNAAAIGNREGKIFVWELQS-SPPVLIARLSHAQSKSPIRQTAMSY-DGSTILSCCED 358 (369)
Q Consensus 291 ~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d 358 (369)
..+.++|+||++ .+.++-+..++|..|++.. ++......+.. .+..-.+++.+ +|++.+++..+
T Consensus 222 ~pNGia~spDg~-~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~---~g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 222 FANGINISPDGK-YVYIAELLAHKIHVYEKHANWTLTPLRVLSF---DTLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp SEEEEEECTTSS-EEEEEEGGGTEEEEEEECTTSCEEEEEEEEC---SSEEEEEEECTTTCCEEEEEESC
T ss_pred ccCcceECCCCC-EEEEEeCCCCeEEEEEECCCCcEecCEEEeC---CCCCceEEEeCCCCcEEEEecCC
Confidence 457899999997 3445556678999999874 33222223321 25678899999 59888766544
No 330
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.66 E-value=0.24 Score=41.67 Aligned_cols=238 Identities=13% Similarity=0.100 Sum_probs=135.6
Q ss_pred CccEEEEecCCcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCc-cccceeec
Q 017553 48 YFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE-KLHKSFVG 126 (369)
Q Consensus 48 ~~~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~ 126 (369)
..+.+|.-....+.|+|+++...++... ..+.|.--.|. .+. .|+..+. ..|+-|++... .+.+.+..
T Consensus 76 ~~~iiALrag~~lQiFnle~K~klks~~------~~e~VvfWkWi--s~~--~l~lVT~-taVyHWsi~~~s~P~kvFdR 144 (494)
T 1bpo_A 76 ASKVIALKAGKTLQIFNIEMKSKMKAHT------MTDDVTFWKWI--SLN--TVALVTD-NAVYHWSMEGESQPVKMFDR 144 (494)
T ss_dssp SSSCEEEEETTEEEEEETTTTEEEEEEE------CSSCCCEEEEE--ETT--EEEEECS-SEEEEEESSSSCCCEEEEEC
T ss_pred CCcEEEEecCCeEEEEchHHhhhhccee------cCCCceEEEec--CCC--eEEEEcC-CeeEEecccCCCCchhheec
Confidence 4577887765559999999988877765 23355445565 444 4555553 47999999643 45555554
Q ss_pred cc----cceEEEEecCCCCceEEEEe-------CCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecC--CCceEEEEE
Q 017553 127 HG----DSINEIRTQPLKPSLVVSAS-------KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHP--SDIYRIASC 193 (369)
Q Consensus 127 ~~----~~v~~~~~~~~~~~~l~s~~-------~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~ 193 (369)
|. ..|.....++ +.+.++..+ -.|.+.+|..+.+ ..+.+. +|......+.+.- ....+++.+
T Consensus 145 ~~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ie---Ghaa~F~~~~~~g~~~~~~lf~fa 219 (494)
T 1bpo_A 145 HSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIE---GHAASFAQFKMEGNAEESTLFCFA 219 (494)
T ss_dssp CGGGTTCEEEEEEECT-TSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEEC---CSEEEEEEEECTTCSSEEEEEEEE
T ss_pred chhcccceEEEEEECC-CCCeEEEEeecccCCcccceEEEeecccc-ccchhe---eeeeeeEEEecCCCCCCceEEEEE
Confidence 43 4677777888 556554332 2478889998754 345555 7876665555431 112344444
Q ss_pred eeC---CcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeee--CcEEEEeecCCeEEEecCC
Q 017553 194 GMD---NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPK 268 (369)
Q Consensus 194 ~~d---~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~ 268 (369)
... +++++.++..... ....+..+... ....-....+...++..+ -..+..-+.-|.+++||+.
T Consensus 220 ~r~~~g~kLhi~Ei~~~~~----------~~~~f~kk~vd-v~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDle 288 (494)
T 1bpo_A 220 VRGQAGGKLHIIEVGTPPT----------GNQPFPKKAVD-VFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLE 288 (494)
T ss_dssp ECSTTCCEEEEEECSCCCT----------TCCCCCCEEEE-CCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETT
T ss_pred EecCCCcEEEEEEcCCCcc----------CCCCccceeee-eeCCcccccCceeEEEecccCCEEEEEecCceEEEEecc
Confidence 432 6888888865200 00000000000 000111223444455555 4567777899999999999
Q ss_pred CCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCC
Q 017553 269 MKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 323 (369)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~ 323 (369)
++. ++..-+.....|...+...... =++.....|.|.--.++..
T Consensus 289 Tgt---------~i~~nrIs~~~iF~t~~~~~~~--Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 289 TGT---------CIYMNRISGETIFVTAPHEATA--GIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp TCC---------EEEEEECCSSCEEEEEEETTTT--EEEEEETTCEEEEEEECTT
T ss_pred cce---------eeeeecccCCceEEecccCCCC--cEEEEccCceEEEEEEccc
Confidence 987 4554444445554444443332 2344446666666555544
No 331
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.57 E-value=0.16 Score=38.39 Aligned_cols=188 Identities=7% Similarity=-0.086 Sum_probs=91.9
Q ss_pred CCceEEEEeCCCcEEEEEccCCc------EEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeee
Q 017553 140 KPSLVVSASKDESVRLWNVQTGI------CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEK 213 (369)
Q Consensus 140 ~~~~l~s~~~dg~i~vwd~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~ 213 (369)
...+|+...+| +++.=....+. ....+.. .--..+..++|+| ++.+.++ .+|.++-.+..+.....
T Consensus 3 ~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~--~gw~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~-- 74 (236)
T 1tl2_A 3 GESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGK--GGWSNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDN-- 74 (236)
T ss_dssp CCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEES--SSCTTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCC--
T ss_pred cceEEEEEeCC-cEEecCCCCCcccchhhhccccCc--cccccceeEEECC-CccEEEE--eCCeEEEECCCCCCccc--
Confidence 34567777777 66555444443 1222221 0123677999999 8886666 67876655543310000
Q ss_pred eeeccCCCCCCCCceeecceeee-ccCCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCC
Q 017553 214 SFTWTDLPSKFPTKYVQFPVFIA-SVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPEC 290 (369)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 290 (369)
-...-..+ ..--....++.|+ |.+.++ .||.|+-++..+............+. ..--.
T Consensus 75 ---------------W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg--~~gw~ 135 (236)
T 1tl2_A 75 ---------------WMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVG--SGGWS 135 (236)
T ss_dssp ---------------HHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEE--CSSGG
T ss_pred ---------------ccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEec--cCCCC
Confidence 00000011 0001113566666 334444 77999888865433211111101111 11114
Q ss_pred CeeEEEEeecCCccEEEEecCCCeEEEEEccCCCc----eeEEEeecCCCccceEEEEecCCCCEEEEeecCCeE
Q 017553 291 DIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP----VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAI 361 (369)
Q Consensus 291 ~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 361 (369)
.+..+.+.|++. |.+.. |+.++-........ .....+.. ..-....-+.|.+++.+.++. +|.+
T Consensus 136 ~~~~lff~p~G~---Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~-~g~~~yr~l~f~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 136 GFKFLFFHPNGY---LYAVH-GQQFYKALPPVSNQDNWLARATKIGQ-GGWDTFKFLFFSSVGTLFGVQ--GGKF 203 (236)
T ss_dssp GEEEEEECTTSC---EEEEE-TTEEEEECCCSSTTCCHHHHCEEEES-SSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred ceEEEEECCCce---EEEEe-CCcEEecCCCCCCCcccccccceecc-CCcceEEEEEECCCCcEEEEe--CCeE
Confidence 578899999994 54455 78754433221110 01111110 122234557799999888766 7744
No 332
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.54 E-value=0.28 Score=47.90 Aligned_cols=220 Identities=15% Similarity=0.174 Sum_probs=121.8
Q ss_pred CCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCC
Q 017553 107 NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSD 186 (369)
Q Consensus 107 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 186 (369)
...|.|.|+.++..+..-. -.--+.-.+| ..+.++--. ..++.|+|+++...+..+. ...+|.-=.|- +
T Consensus 47 ~~~vvIidl~~~~~~~rrp---i~AdsAIMnP-~~~iiALra-g~~lQiFnl~~k~klks~~----~~e~VvfWkWi--s 115 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRP---ISADSAIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAHT----MTDDVTFWKWI--S 115 (1630)
T ss_pred CceEEEEECCCCCCccccc---ccchhhccCC-CcceEEEec-CCeEEEeehHHhhhhcccc----cCCCceEEEec--C
Confidence 3478889988766442211 1122344677 556666544 6799999999988888776 55567777776 3
Q ss_pred ceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccC----CCceeeeeee--CcEEEEee---
Q 017553 187 IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH----SNYVDCNRWL--GDFILSKS--- 257 (369)
Q Consensus 187 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~--~~~l~~~~--- 257 (369)
.+.|+..+ +..|+-|++... ..|...+..| ...|..-..+ .++++..|
T Consensus 116 ~~~l~lVT-~~aVyHW~~~~~----------------------s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~ 172 (1630)
T 1xi4_A 116 LNTVALVT-DNAVYHWSMEGE----------------------SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISA 172 (1630)
T ss_pred CCeeEEEc-CCeEEEeccCCC----------------------CccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeecc
Confidence 44454444 457999999651 1122222222 2223322222 44444332
Q ss_pred ----cCCeEEEecCCCCCCCCCCCccceeeeccCCCCC--eeEEEEeecCCccEEEEecCCCeEEEEEccCC---Ccee-
Q 017553 258 ----VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECD--IWFIKFSCDFHYNAAAIGNREGKIFVWELQSS---PPVL- 327 (369)
Q Consensus 258 ----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~- 327 (369)
-.|.+.+|...........++......+...... ..-++|.... ...+.++|.++... .+..
T Consensus 173 ~~~~v~G~mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~--------~~g~kLhi~Ei~~~~~~~~~f~ 244 (1630)
T 1xi4_A 173 QQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRG--------QAGGKLHIIEVGTPPTGNQPFP 244 (1630)
T ss_pred CCCcccceeeeeecccccchhhhHhHhhhheeccCCCCCCceEEEEEEec--------CCCceEEEEecCCCccCCCCCc
Confidence 3578899988776544433333333222222111 1111222111 11368889888543 1111
Q ss_pred --EE--EeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecCC
Q 017553 328 --IA--RLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 368 (369)
Q Consensus 328 --~~--~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 368 (369)
.. .++......-..++..++.-..+..-+.-|.|+++|+.+
T Consensus 245 kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t 289 (1630)
T 1xi4_A 245 KKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET 289 (1630)
T ss_pred cccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEeccc
Confidence 11 111112234455788888888888888999999999976
No 333
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.46 E-value=0.3 Score=40.40 Aligned_cols=74 Identities=11% Similarity=0.020 Sum_probs=45.1
Q ss_pred CeeEEEEeecC-----CccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEee-cCCeEEEE
Q 017553 291 DIWFIKFSCDF-----HYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCC-EDGAIWRW 364 (369)
Q Consensus 291 ~i~~~~~s~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~vw 364 (369)
....++|.... +..++++....+.|...++..++......+- ......+..+++.|||.++++.. .+| +||
T Consensus 272 ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~rp~~v~~~pdG~lyv~td~~~g--~I~ 348 (353)
T 2g8s_A 272 AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRIL-TDRGQRIRDVRTGPDGYLYVLTDESSG--ELL 348 (353)
T ss_dssp CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEES-GGGCCCEEEEEECTTSCEEEEECSTTE--EEE
T ss_pred CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcc-cCCCCceeEEEECCCCcEEEEEeCCCC--EEE
Confidence 45667776421 1246777777888999888865322222221 12235789999999999777543 345 455
Q ss_pred ecC
Q 017553 365 DAI 367 (369)
Q Consensus 365 ~~~ 367 (369)
.+.
T Consensus 349 ri~ 351 (353)
T 2g8s_A 349 KVS 351 (353)
T ss_dssp EEE
T ss_pred EEe
Confidence 554
No 334
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.44 E-value=0.53 Score=43.00 Aligned_cols=197 Identities=8% Similarity=-0.019 Sum_probs=99.5
Q ss_pred CCceEEEEeCC----CcEEEEEccCCcEEEEe-ec----cCCCCCcEEEEEecCCCceEEEEEeeCC------cEEEEEc
Q 017553 140 KPSLVVSASKD----ESVRLWNVQTGICILIF-AG----AGGHRNEVLSVDFHPSDIYRIASCGMDN------TVKIWSM 204 (369)
Q Consensus 140 ~~~~l~s~~~d----g~i~vwd~~~~~~~~~~-~~----~~~~~~~v~~~~~~~~~~~~l~~~~~d~------~v~i~d~ 204 (369)
++.+++.|+.+ ..+.+||+.+++....- .. .......-..+.+.. ++.+++.||.++ .+.+||.
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEET
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEeC
Confidence 56677777753 46889999887654432 10 001111223333432 567778887543 4778888
Q ss_pred cCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeee-eCcEEEEeecCC--eEEEecCCCCCCCCCCCccce
Q 017553 205 KEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW-LGDFILSKSVDN--EIVLWEPKMKEQSPGEGTADI 281 (369)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~ 281 (369)
.+..- .... .+......-.++.+ .+..++.|+.++ .+.+||+.+.. ...
T Consensus 476 ~t~~W--------~~~~-------------~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~-------W~~ 527 (695)
T 2zwa_A 476 KTREW--------SMIK-------------SLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEI-------FKD 527 (695)
T ss_dssp TTTEE--------EECC-------------CCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTE-------EEE
T ss_pred CCCcE--------EECC-------------CCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCc-------eEE
Confidence 77321 1110 00001111122222 477778877655 68899988753 111
Q ss_pred eee---ccCCCCCeeEEEEeecCCccEEEEecC-------CCeEEEEEccCCC------ceeEEEeecCCCccceEEEEe
Q 017553 282 LQK---YPVPECDIWFIKFSCDFHYNAAAIGNR-------EGKIFVWELQSSP------PVLIARLSHAQSKSPIRQTAM 345 (369)
Q Consensus 282 ~~~---~~~~~~~i~~~~~s~~~~~~~l~~~~~-------dg~i~i~d~~~~~------~~~~~~~~~~~~~~~v~~~~~ 345 (369)
+.. .+.......++.+..+.. .+++.|+. .+.+.+||+.+.. ...+....... ...-. +..
T Consensus 528 ~~~~g~~p~~r~~~~a~v~~~~~~-~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~-R~~~~-~~~ 604 (695)
T 2zwa_A 528 VTPKDEFFQNSLVSAGLEFDPVSK-QGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQ-RYGSQ-IKY 604 (695)
T ss_dssp CCCSSGGGGSCCBSCEEEEETTTT-EEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGC-CBSCE-EEE
T ss_pred ccCCCCCCCcccceeEEEEeCCCC-EEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCC-cccce-EEE
Confidence 111 222222223345554422 35666654 2469999999886 22333221111 11222 223
Q ss_pred cCCCCEEEEeecC--------CeEEEEecCC
Q 017553 346 SYDGSTILSCCED--------GAIWRWDAIP 368 (369)
Q Consensus 346 s~~~~~l~s~~~d--------g~i~vw~~~~ 368 (369)
..++.+++.|+.+ ..|.+||+.+
T Consensus 605 ~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t 635 (695)
T 2zwa_A 605 ITPRKLLIVGGTSPSGLFDRTNSIISLDPLS 635 (695)
T ss_dssp EETTEEEEECCBCSSCCCCTTTSEEEEETTT
T ss_pred eCCCEEEEECCccCCCCCCCCCeEEEEECCC
Confidence 3337788888743 4588888765
No 335
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.20 E-value=0.72 Score=42.12 Aligned_cols=108 Identities=13% Similarity=0.114 Sum_probs=58.9
Q ss_pred CCCccEEEEeecC----CeEEEEEcCCcccccee--------eccccceEEEEecCCCCceEEEEeCC------CcEEEE
Q 017553 95 VDGIPFLVAGGIN----GIIRVIDVSNEKLHKSF--------VGHGDSINEIRTQPLKPSLVVSASKD------ESVRLW 156 (369)
Q Consensus 95 ~~g~~~l~~~~~d----g~i~vwd~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~l~s~~~d------g~i~vw 156 (369)
.++. +++.|+.+ ..+.+||..+++....- ......-..+.+.. ++.+++.|+.+ ..+.+|
T Consensus 396 ~~~~-iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~y 473 (695)
T 2zwa_A 396 AGND-VFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIF 473 (695)
T ss_dssp CSSC-EEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEE
T ss_pred ECCE-EEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEE
Confidence 3455 77777753 45888998776432211 11111223333432 45677777654 357889
Q ss_pred EccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCC--cEEEEEccCc
Q 017553 157 NVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN--TVKIWSMKEF 207 (369)
Q Consensus 157 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~--~v~i~d~~~~ 207 (369)
|+.+.+-... .... ....-.+++... ++.+++.|+.++ .+.+||..+.
T Consensus 474 d~~t~~W~~~-~~~p-~~R~~h~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t~ 523 (695)
T 2zwa_A 474 DMKTREWSMI-KSLS-HTRFRHSACSLP-DGNVLILGGVTEGPAMLLYNVTEE 523 (695)
T ss_dssp ETTTTEEEEC-CCCS-BCCBSCEEEECT-TSCEEEECCBCSSCSEEEEETTTT
T ss_pred eCCCCcEEEC-CCCC-CCcccceEEEEc-CCEEEEECCCCCCCCEEEEECCCC
Confidence 9887654332 2111 111112233323 678888888765 6889998873
No 336
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=96.03 E-value=0.43 Score=37.97 Aligned_cols=221 Identities=11% Similarity=0.039 Sum_probs=113.0
Q ss_pred ceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEE
Q 017553 85 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICI 164 (369)
Q Consensus 85 ~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 164 (369)
.|..++.- . .. .++. . ||.|+.|-....-.+..-......|..++... ...++. . ||.|..|-......+
T Consensus 25 ~i~~ia~G--~-~h-~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~--~hs~~l-~-~G~v~~wG~n~~Gql 94 (282)
T 3qhy_B 25 GVDAIAGG--Y-FH-GLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN--YHSLAL-K-DGEVIAWGGNEDGQT 94 (282)
T ss_dssp SCCEEEEC--S-SE-EEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECS--SEEEEE-E-TTEEEEEECCTTSTT
T ss_pred CCcEEEeC--C-Ce-EEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCC--CEEEEE-E-CCEEEEeeCCCCCCC
Confidence 45556543 2 12 3444 5 89999998654322221111234577777654 233333 4 899999986542221
Q ss_pred EEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCcee
Q 017553 165 LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD 244 (369)
Q Consensus 165 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 244 (369)
-.-. .-...|..++... .. .+.-. ||.|+.|-........ .+ ......|.
T Consensus 95 g~P~---~~~~~v~~ia~G~-~h--s~al~-~G~v~~wG~n~~gqlg-------------------~~----~~~~~~i~ 144 (282)
T 3qhy_B 95 TVPA---EARSGVDAIAAGA-WA--SYALK-DGKVIAWGDDSDGQTT-------------------VP----AEAQSGVT 144 (282)
T ss_dssp CCCG---GGSSSEEEEEEET-TE--EEEEE-TTEEEEEECCTTSTTS-------------------CC----GGGGSSEE
T ss_pred CCCc---ccCCCeEEEECcC-CE--EEEEe-CCeEEEecCCCCCcCC-------------------CC----ccCCCCeE
Confidence 1101 1234688888764 32 33334 9999999876521100 00 00122344
Q ss_pred eeeeeCcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCC
Q 017553 245 CNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP 324 (369)
Q Consensus 245 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~ 324 (369)
.++......+.-. ||.+..|-.....+.... . .....|..++..... .++. .+|.|+.|-.....
T Consensus 145 ~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~p-----~----~~~~~v~~i~~G~~h---s~al--~~G~v~~wG~n~~g 209 (282)
T 3qhy_B 145 ALDGGVYTALAVK-NGGVIAWGDNYFGQTTVP-----A----EAQSGVDDVAGGIFH---SLAL--KDGKVIAWGDNRYK 209 (282)
T ss_dssp EEEECSSEEEEEE-TTEEEEEECCTTSTTSCC-----G----GGGSSEEEEEECSSE---EEEE--ETTEEEEEECCTTS
T ss_pred EEEcccCEEEEEE-CCEEEEecCCCCCCCCCc-----e----ecCCCeEEEEecCCE---EEEE--ECCeEEEEECCCCC
Confidence 4544434433334 899999987654432110 0 012345555543332 4444 58999999765532
Q ss_pred ceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecC
Q 017553 325 PVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 325 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 367 (369)
..- ++. .....|..++...+. .++.. ||.|+.|-..
T Consensus 210 qlg---~p~-~~~~~v~~i~~G~~h-~~al~--~g~v~~wG~n 245 (282)
T 3qhy_B 210 QTT---VPT-EALSGVSAIASGEWY-SLALK--NGKVIAWGSS 245 (282)
T ss_dssp TTC---CCG-GGGSSCCEEEECSSC-EEEEE--TTEEEEESTT
T ss_pred CCC---CCc-ccCCCceEEEcCCCE-EEEEE--CCEEEEecCC
Confidence 111 110 112356777765543 33333 8999998643
No 337
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=95.84 E-value=0.63 Score=38.43 Aligned_cols=115 Identities=10% Similarity=0.076 Sum_probs=62.5
Q ss_pred ceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCCcEEEEEecCCceeEEEeeec-cCCcccceeEEEeeecCC----
Q 017553 22 EYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYV-DEDKEESFYTVSWACNVD---- 96 (369)
Q Consensus 22 ~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~---- 96 (369)
.++......+ -.....++|.| +|.++++-..+.|.+++ .++. ..+.... ..........+++. |+
T Consensus 18 ~~~~~~va~~-l~~P~~ia~~p----dG~l~V~e~~g~I~~~d-~~G~--~~~~~~~v~~~g~~g~~gia~~--pdf~~~ 87 (354)
T 3a9g_A 18 KFKISEVASD-LEVPWSIAPLG----GGRYLVTERPGRLVLIS-PSGK--KLVASFDVANVGEAGLLGLALH--PEFPKK 87 (354)
T ss_dssp CEEEEEEECS-CSCEEEEEEEE----TTEEEEEETTTEEEEEC-SSCE--EEEEECCCCCSTTCSEEEEEEC--TTTTTS
T ss_pred CeEEEEEeCC-CCCCeEEEEcC----CCeEEEEeCCCEEEEEe-CCCc--eEeeccceeecCCCceeeEEeC--CCCCcC
Confidence 3444433333 34578999999 68877777665588887 4454 3332211 11123456667776 76
Q ss_pred CccEEEEeec---C----CeEEEEEcCCc-------ccc-ceeec-cccceEEEEecCCCCceEEEEe
Q 017553 97 GIPFLVAGGI---N----GIIRVIDVSNE-------KLH-KSFVG-HGDSINEIRTQPLKPSLVVSAS 148 (369)
Q Consensus 97 g~~~l~~~~~---d----g~i~vwd~~~~-------~~~-~~~~~-~~~~v~~~~~~~~~~~~l~s~~ 148 (369)
+. +.++-.. + ..|..|+.... +.+ ..+.. .......|+|.| ++.++++.+
T Consensus 88 g~-lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt~G 153 (354)
T 3a9g_A 88 SW-VYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYITTG 153 (354)
T ss_dssp CE-EEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEECC
T ss_pred CE-EEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEEEC
Confidence 44 4443332 3 56777876543 111 11221 111246799999 777666644
No 338
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.25 E-value=1 Score=36.82 Aligned_cols=115 Identities=10% Similarity=0.059 Sum_probs=67.4
Q ss_pred ccEEEEecCCc-EEEEEecCCceeEEEeeeccCCcccceeEEEeeecC-CCccEEEEe-ecCCeEEEEEcCCccccceee
Q 017553 49 FNVFATVGGNR-VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNV-DGIPFLVAG-GINGIIRVIDVSNEKLHKSFV 125 (369)
Q Consensus 49 ~~~la~~~~~~-v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~g~~~l~~~-~~dg~i~vwd~~~~~~~~~~~ 125 (369)
+.+++.++.|+ |.-+|..+|+..-.++.- ...+.....-...+ ++. .++.. +.||.|..++..+|.....+.
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~----~~~p~~~~~~~~~~~~~~-~~vv~p~~dG~l~a~~~~~G~~~~~~~ 84 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPE----NFQPLIEIQEPSRLETYE-TLIIEPFGDGNIYYFNAHQGLQKLPLS 84 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGG----GSCCSEECCCSCTTTSSE-EEEECCSTTTEEEEEETTTEEEEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCC----ccCCcEEecCCccccCCc-EEEEEECCCCEEEEEECCCCcEEeeec
Confidence 34566666666 888888888777666532 00111111100011 333 44443 689999999988875443332
Q ss_pred c----cccceEEEEecC--------CCCceEEEEeCCCcEEEEEccCCcEEEEeec
Q 017553 126 G----HGDSINEIRTQP--------LKPSLVVSASKDESVRLWNVQTGICILIFAG 169 (369)
Q Consensus 126 ~----~~~~v~~~~~~~--------~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 169 (369)
. ...++.. .-.| ..+..+++|+.+|.+...|+++|+.+..+..
T Consensus 85 ~~~lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 85 IRQLVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp HHHHHTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred cccceecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 1 1112221 0000 0346789999999999999999999999873
No 339
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=94.79 E-value=1.4 Score=36.22 Aligned_cols=158 Identities=9% Similarity=0.043 Sum_probs=88.9
Q ss_pred cCeEEEEEeeccCCCc--cEEEEecC--Cc-EEEEEecCCc-eeEEEeeeccCCcccceeEEEeeecCCCccEEEEee--
Q 017553 34 RPLYAVVFNFIDSRYF--NVFATVGG--NR-VTVYQCLEGG-VIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG-- 105 (369)
Q Consensus 34 ~~v~~~~~s~~~~~~~--~~la~~~~--~~-v~iw~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~-- 105 (369)
-....+.+.++. ++ .++++-.. +. |.+|++..+. ....+..+.. ..-...+.+.+. ++|. +.++..
T Consensus 112 f~PhGi~~~~d~--dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g-~~~~~pND~~v~--~~G~-fyvt~~~~ 185 (355)
T 3sre_A 112 FNPHGISTFIDD--DNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH-KLLPSVNDIVAV--GPEH-FYATNDHY 185 (355)
T ss_dssp CCEEEEEEEECT--TCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC-TTCSSEEEEEEE--ETTE-EEEEESCS
T ss_pred eeeeeeEEEECC--CCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEecccc-CCCCCCceEEEe--CCCC-EEecCCcE
Confidence 356667766631 23 34444333 23 8888887643 3333433322 234466778877 8898 666543
Q ss_pred ---------------cCCeEEEEEcCCccccceeeccccceEEEEecCCCCceEE-EEeCCCcEEEEEccC-CcEE--EE
Q 017553 106 ---------------INGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVV-SASKDESVRLWNVQT-GICI--LI 166 (369)
Q Consensus 106 ---------------~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~dg~i~vwd~~~-~~~~--~~ 166 (369)
..|.|..+|. ++ +..+...-...+.++|+| +++.|+ +-+..+.|..|++.. ++.. +.
T Consensus 186 ftd~~~~~~e~~~~~~~g~vyr~d~--~~-~~~~~~~l~~pNGia~sp-Dg~~lYvadt~~~~I~~~~~~~~g~l~~~~~ 261 (355)
T 3sre_A 186 FIDPYLKSWEMHLGLAWSFVTYYSP--ND-VRVVAEGFDFANGINISP-DGKYVYIAELLAHKIHVYEKHANWTLTPLRV 261 (355)
T ss_dssp CSSHHHHHHHHHTTCCCEEEEEECT--TC-CEEEEEEESSEEEEEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEE
T ss_pred eCCcccccchhhccCCccEEEEEEC--Ce-EEEeecCCcccCcceECC-CCCEEEEEeCCCCeEEEEEECCCCcEecCEE
Confidence 1245555554 32 333333334578999999 665554 455678999999864 3321 22
Q ss_pred eeccCCCCCcEEEEEecCCCceEEEEEeeC-CcEEEEEcc
Q 017553 167 FAGAGGHRNEVLSVDFHPSDIYRIASCGMD-NTVKIWSMK 205 (369)
Q Consensus 167 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-~~v~i~d~~ 205 (369)
+. ..+..-.+++.+.++++.+++..+ +.|..|+..
T Consensus 262 ~~----~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 262 LS----FDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp EE----CSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred Ee----CCCCCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence 32 345677888887227777666533 344444443
No 340
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=94.56 E-value=1.6 Score=35.79 Aligned_cols=103 Identities=14% Similarity=0.074 Sum_probs=58.5
Q ss_pred eEEEeeecCCCccEEEEeecCCeEEEEEcCCccc--ccee----eccccceEEEEecCC---CCceEEEE--eCCCcEEE
Q 017553 87 YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL--HKSF----VGHGDSINEIRTQPL---KPSLVVSA--SKDESVRL 155 (369)
Q Consensus 87 ~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~--~~~~----~~~~~~v~~~~~~~~---~~~~l~s~--~~dg~i~v 155 (369)
..++|. |+|. ++++--..|.|++++..+++. +..+ .........|+++|+ ++.+.++- ..++.|.-
T Consensus 35 ~~ia~~--pdG~-llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R 111 (347)
T 3das_A 35 WGLAPL--PGGD-LLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR 111 (347)
T ss_dssp EEEEEC--TTSC-EEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred eEEEEc--CCCc-EEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence 457766 9998 666665589999998655442 2111 223456789999993 24343332 23455666
Q ss_pred EEccCC----------cEEE-EeeccCCCCCcEEEEEecCCCceEEEEEee
Q 017553 156 WNVQTG----------ICIL-IFAGAGGHRNEVLSVDFHPSDIYRIASCGM 195 (369)
Q Consensus 156 wd~~~~----------~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 195 (369)
|.+..+ +.+. .+.....| .-..|.|.| ++.++++.+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~i~~~~p~~~~H--~g~~l~fgp-DG~Lyvt~Gd 159 (347)
T 3das_A 112 MLYDEKKPSGEQLGAPDTVFRGIPKGVIH--NGGRIAFGP-DKMLYAGTGE 159 (347)
T ss_dssp EEBCTTSCTTCCBCCCEEEEEEECCCSSC--CCCCEEECT-TSCEEEECBC
T ss_pred EEeCCCCcccccCCCcEEEEEcCCCCCCc--cCccccCCC-CCCEEEEECC
Confidence 665441 1111 12211123 345799999 7777777553
No 341
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=94.49 E-value=1.7 Score=35.69 Aligned_cols=262 Identities=13% Similarity=0.057 Sum_probs=128.9
Q ss_pred eeecccCCcCeEEEEEeeccCCCccEEEEec-CCcEEEEEecCCceeEEEeeec--cCCcccceeEEEeeecCC----Cc
Q 017553 26 TNKLQEGKRPLYAVVFNFIDSRYFNVFATVG-GNRVTVYQCLEGGVIAALQSYV--DEDKEESFYTVSWACNVD----GI 98 (369)
Q Consensus 26 ~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~-~~~v~iw~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~----g~ 98 (369)
...+-..-..-+.|+|.| +|.++++-. .+.|++++..++.. ..+.... ..........+++. |+ +.
T Consensus 24 ~~~va~gL~~P~~ia~~p----dG~llVter~~G~I~~v~~~~g~~-~~v~~~~~v~~~g~~GllGia~~--Pdf~~~g~ 96 (347)
T 3das_A 24 LRTVATGLNSPWGLAPLP----GGDLLVSSRDEATITRVDAKTGRK-TELGEVPGVSPSGEGGLLGIALS--PDYASDHM 96 (347)
T ss_dssp EEEEECCCSSEEEEEECT----TSCEEEEETTTCEEEEECTTTCCE-EEEEECTTCCCBTTBSEEEEEEC--TTHHHHCE
T ss_pred eEEeecCCCCceEEEEcC----CCcEEEEEecCCEEEEEECCCCcE-eeecccCceeecCCCCceeeEec--cccccCCE
Confidence 333444445678999999 688888887 44488887544443 2222211 11234566777777 64 44
Q ss_pred cEEEE--eecCCeEEEEEcCCcc----------c-cceee-ccccceEEEEecCCCCceEEEEeC-------------CC
Q 017553 99 PFLVA--GGINGIIRVIDVSNEK----------L-HKSFV-GHGDSINEIRTQPLKPSLVVSASK-------------DE 151 (369)
Q Consensus 99 ~~l~~--~~~dg~i~vwd~~~~~----------~-~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~-------------dg 151 (369)
+.++ ...++.|.-|.+..+. . +..+. .....-..|.|.| ++.+.++.+. .|
T Consensus 97 -lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G 174 (347)
T 3das_A 97 -VYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGP-DKMLYAGTGESGDTGLSQDRKSLGG 174 (347)
T ss_dssp -EEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECT-TSCEEEECBCTTCGGGTTCTTCSTT
T ss_pred -EEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCC-CCCEEEEECCCCCCccccCCCCCCC
Confidence 3332 1234566666665421 1 11121 1111345799999 7777776542 24
Q ss_pred cEEEEEccCC---------cEEEEeeccCCCCCcEEEEEecCCCceEEEEE-eeCCcEEEEEccCceeeeeeeeeccCCC
Q 017553 152 SVRLWNVQTG---------ICILIFAGAGGHRNEVLSVDFHPSDIYRIASC-GMDNTVKIWSMKEFWTYVEKSFTWTDLP 221 (369)
Q Consensus 152 ~i~vwd~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~d~~v~i~d~~~~~~~~~~~~~~~~~~ 221 (369)
.|.-.+.... ..+... +|.. ...++|+| ++.++++= +.|+.=.|--+..+.. +.|....
T Consensus 175 ~IlRi~~dG~ip~~nPf~~~~i~a~----G~RN-p~Gla~dp-~G~L~~~d~g~~~~deln~i~~G~n-----yGwP~~~ 243 (347)
T 3das_A 175 KILRMTPDGEPAPGNPFPGSPVYSY----GHRN-VQGLAWDD-KQRLFASEFGQDTWDELNAIKPGDN-----YGWPEAE 243 (347)
T ss_dssp CEEEECTTSSBCTTCSSTTCCEEEB----CCSB-CCEEEECT-TCCEEEEECCSSSCEEEEEECTTCB-----CCTTTCC
T ss_pred EEEEEeCCCCccCCCCCCCCeEEee----CCCC-cceEEECC-CCCEEEEecCCCCCceeeEEcCCCE-----ecCCccc
Confidence 4444444321 112211 3443 45789998 66655543 2233223333332211 1111111
Q ss_pred CCCCCceeecceeeeccCCCceeeeeee-CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeec
Q 017553 222 SKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCD 300 (369)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 300 (369)
..........|+.....+......+.|. +..++..-..+.|....+...... .+....+......+..++..||
T Consensus 244 g~~~~~~~~~P~~~~~~~~~ap~G~~~~~g~~~~~~l~~~~l~~v~~~~~~~~-----~~~e~~l~~~~gR~~dv~~~pD 318 (347)
T 3das_A 244 GKGGGSGFHDPVAQWSTDEASPSGIAYAEGSVWMAGLRGERLWRIPLKGTAAA-----ADPQAFLEGEYGRLRTVAPAGG 318 (347)
T ss_dssp SSCCCTTCCCCSEEECTTTCCEEEEEEETTEEEEEESTTCSEEEEEEETTEES-----SCCEEESTTTSSCEEEEEEEET
T ss_pred CCCCCccccCCcEecCCCCCCCcceEEEcCceeeccccCCEEEEEEecCCcee-----cceEEeecCCCCCccEEEECCC
Confidence 1111112233444444443456677776 555665555666666666543210 0011122233467888999999
Q ss_pred CCccEEEEecCCC
Q 017553 301 FHYNAAAIGNREG 313 (369)
Q Consensus 301 ~~~~~l~~~~~dg 313 (369)
|. .++++...||
T Consensus 319 G~-lyv~td~~~g 330 (347)
T 3das_A 319 DK-LWLVTSNTDG 330 (347)
T ss_dssp TE-EEEEECTTSS
T ss_pred Cc-EEEEEcCCCC
Confidence 85 3444444444
No 342
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=94.47 E-value=1.7 Score=35.79 Aligned_cols=262 Identities=12% Similarity=0.043 Sum_probs=119.1
Q ss_pred CeEEEEEeeccCCCcc-EEEEecCCcEEEEEecCCceeEEEeeec--cCCcccceeEEEeeecCC----CccEEEEeec-
Q 017553 35 PLYAVVFNFIDSRYFN-VFATVGGNRVTVYQCLEGGVIAALQSYV--DEDKEESFYTVSWACNVD----GIPFLVAGGI- 106 (369)
Q Consensus 35 ~v~~~~~s~~~~~~~~-~la~~~~~~v~iw~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~----g~~~l~~~~~- 106 (369)
....|+|.| +|+ ++++-..+.|++++. ++.....+.... ..........+++. |+ +. +.++-..
T Consensus 19 ~P~~i~~~p----dG~~l~V~e~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~--pdf~~~g~-lYv~~~~~ 90 (353)
T 2g8s_A 19 HPWALAFLP----DNHGMLITLRGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLA--PDFAQSRR-IWLSYSEV 90 (353)
T ss_dssp SEEEEEECS----TTCCEEEEETTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEEC--TTHHHHCE-EEEEEEEE
T ss_pred CcEEEEEcC----CCCEEEEEeCCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEEC--CCCCCCCE-EEEEEeCC
Confidence 468999999 688 777766555888873 333221122110 00123345667776 74 44 4444322
Q ss_pred ------CCeEEEEEcCCc--c--ccc----eeec---cccceEEEEecCCCCceEEEEeCC-------------CcEEEE
Q 017553 107 ------NGIIRVIDVSNE--K--LHK----SFVG---HGDSINEIRTQPLKPSLVVSASKD-------------ESVRLW 156 (369)
Q Consensus 107 ------dg~i~vwd~~~~--~--~~~----~~~~---~~~~v~~~~~~~~~~~~l~s~~~d-------------g~i~vw 156 (369)
...|..|++... + ... .+.. .......|+|.| ++.+.++.+.. |.|.-+
T Consensus 91 ~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri 169 (353)
T 2g8s_A 91 GDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDG-KGYLFIALGENNQRPTAQDLDKLQGKLVRL 169 (353)
T ss_dssp CSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECS-SSEEEEEECCTTCGGGGGCTTSCTTEEEEE
T ss_pred CCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECC-CCcEEEEECCCCCCCccCCCCCCCeEEEEE
Confidence 235666666432 1 111 1110 011235799999 77666664432 456666
Q ss_pred EccCCc------------EEEEeeccCCCCCcEEEEEecCCCceEEEEEe-eCCcEEEEEccCceeeeeeee----eccC
Q 017553 157 NVQTGI------------CILIFAGAGGHRNEVLSVDFHPSDIYRIASCG-MDNTVKIWSMKEFWTYVEKSF----TWTD 219 (369)
Q Consensus 157 d~~~~~------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~----~~~~ 219 (369)
+....- ....+.. ++. ....++|+|.++.++++-. .++.=.|.-+..+...--... ....
T Consensus 170 ~~dG~~p~~npf~~~~~~~~~i~a~--G~r-np~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~ 246 (353)
T 2g8s_A 170 TDQGEIPDDNPFIKESGVRAEIWSY--GIR-NPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSG 246 (353)
T ss_dssp ETTSCCCTTCTTTTSTTSCTTEEEE--CCS-EEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTS
T ss_pred CCCCCCCCCCCCcCCCCCCccEEEE--cCc-CccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCC
Confidence 654210 1111111 232 3578999984455444322 121122222222211100000 0000
Q ss_pred --CCCC--CCCceeecceeeeccCCCceeeeeee---------CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeecc
Q 017553 220 --LPSK--FPTKYVQFPVFIASVHSNYVDCNRWL---------GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP 286 (369)
Q Consensus 220 --~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~---------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 286 (369)
.+.. ........++.....| .....+.|. ++++++.-..+.|...++...+. .....-+.
T Consensus 247 ~~~~~~~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~------~~~~~~~~ 319 (353)
T 2g8s_A 247 FKIPEAKGEIVAGTEQPVFYWKDS-PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKV------TEDGRILT 319 (353)
T ss_dssp SCCTTCCBSSCTTSCCCSEEESSC-CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEE------EEEEEESG
T ss_pred CccCcccCCCCCCccCCeEEeCCC-cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeE------eeeEEccc
Confidence 0000 0000112233333333 345555553 56666666677888877764321 00111111
Q ss_pred CCCCCeeEEEEeecCCccEEEEecCCCeEE
Q 017553 287 VPECDIWFIKFSCDFHYNAAAIGNREGKIF 316 (369)
Q Consensus 287 ~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~ 316 (369)
.....+..+++.|++. .++++-..+|.|.
T Consensus 320 ~~~~rp~~v~~~pdG~-lyv~td~~~g~I~ 348 (353)
T 2g8s_A 320 DRGQRIRDVRTGPDGY-LYVLTDESSGELL 348 (353)
T ss_dssp GGCCCEEEEEECTTSC-EEEEECSTTEEEE
T ss_pred CCCCceeEEEECCCCc-EEEEEeCCCCEEE
Confidence 2234678899999986 2333333455443
No 343
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.39 E-value=1.2 Score=33.67 Aligned_cols=149 Identities=6% Similarity=-0.057 Sum_probs=75.9
Q ss_pred cCeEEEEEeeccCCCccEEEEecCCcEEEEEecCCce------eEEEeeeccCCcccceeEEEeeecCCCccEEEEeecC
Q 017553 34 RPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGV------IAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGIN 107 (369)
Q Consensus 34 ~~v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~d 107 (369)
..+..++|+| +|.+.|. ..+.+.-.+..+... -..+-. .--.....+.|. |+|. +.++ .|
T Consensus 41 ~~~~~laf~P----~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~----~Gw~~F~a~~fD--~~G~-LYav--~d 106 (236)
T 1tl2_A 41 SNFKFLFLSP----GGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGN----GGWNQFQFLFFD--PNGY-LYAV--SK 106 (236)
T ss_dssp TTCSEEEECT----TSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEEC----SCGGGCSEEEEC--TTSC-EEEE--ET
T ss_pred ccceeEEECC----CccEEEE-eCCeEEEECCCCCCcccccccccEecc----cccccceEEEEC--CCCC-EEEe--CC
Confidence 3677999999 5888887 555454444333111 111110 011113445555 9997 4444 66
Q ss_pred CeEEEEEcCCccccc-----eee--ccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCc------EEEEeeccCCCC
Q 017553 108 GIIRVIDVSNEKLHK-----SFV--GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI------CILIFAGAGGHR 174 (369)
Q Consensus 108 g~i~vwd~~~~~~~~-----~~~--~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~------~~~~~~~~~~~~ 174 (369)
|.|+-++-.+...-. ..- .-=..+..|.|.| ++.+.+.. |+.++-....++. ....+.. ..-
T Consensus 107 G~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~--~g~ 181 (236)
T 1tl2_A 107 DKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQ--GGW 181 (236)
T ss_dssp TEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEES--SSG
T ss_pred CEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECC-CceEEEEe--CCcEEecCCCCCCCcccccccceecc--CCc
Confidence 998877753321110 110 0114679999999 77666555 7775433322211 0111110 122
Q ss_pred CcEEEEEecCCCceEEEEEeeCCcEEEEEccC
Q 017553 175 NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206 (369)
Q Consensus 175 ~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~ 206 (369)
..-..+.|.+ ++.++++. ++ ++|....
T Consensus 182 ~~yr~l~f~~-~G~l~~v~--~g--~~Y~~~~ 208 (236)
T 1tl2_A 182 DTFKFLFFSS-VGTLFGVQ--GG--KFYEDYP 208 (236)
T ss_dssp GGEEEEEECT-TSCEEEEE--TT--EEEEESC
T ss_pred ceEEEEEECC-CCcEEEEe--CC--eEEecCC
Confidence 2344566887 77665555 66 4444443
No 344
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=93.41 E-value=3.4 Score=35.43 Aligned_cols=65 Identities=15% Similarity=0.211 Sum_probs=39.1
Q ss_pred cceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEE--eeccC---CCCCcEEEEEecCC---CceEEEEEe
Q 017553 129 DSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILI--FAGAG---GHRNEVLSVDFHPS---DIYRIASCG 194 (369)
Q Consensus 129 ~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~--~~~~~---~~~~~v~~~~~~~~---~~~~l~~~~ 194 (369)
...+.|+|.| ++.++++-...+.|++++..+++.... +.... .....+..|+|+|+ ++.++++-+
T Consensus 27 ~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s 99 (454)
T 1cru_A 27 NKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGT 99 (454)
T ss_dssp SSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEE
T ss_pred CCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEe
Confidence 3567999999 787766644434788888765554322 21100 12456789999984 444444443
No 345
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=93.05 E-value=2.7 Score=33.30 Aligned_cols=241 Identities=14% Similarity=0.118 Sum_probs=123.1
Q ss_pred CeEEEEEeeccCCCccEEEEecCCcEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCCeEEEEE
Q 017553 35 PLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVID 114 (369)
Q Consensus 35 ~v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd 114 (369)
.|..|+... ...++.. ++.|..|-.....++.... .....|..++.. .. . .++. . ||.|+.|-
T Consensus 25 ~i~~ia~G~-----~h~~~l~-~G~v~~wG~n~~Gqlg~p~-----~~~~~i~~ia~G--~~-h-s~~l-~-~G~v~~wG 87 (282)
T 3qhy_B 25 GVDAIAGGY-----FHGLALK-GGKVLGWGANLNGQLTMPA-----ATQSGVDAIAAG--NY-H-SLAL-K-DGEVIAWG 87 (282)
T ss_dssp SCCEEEECS-----SEEEEEE-TTEEEEEECCSSSTTSCCG-----GGGSCCCEEEEC--SS-E-EEEE-E-TTEEEEEE
T ss_pred CCcEEEeCC-----CeEEEEE-CCEEEEEeCCCCCCCCCCc-----cCCCCEEEEEeC--CC-E-EEEE-E-CCEEEEee
Confidence 577777554 3445543 4448888755443332111 123355555543 22 1 3444 4 89999998
Q ss_pred cCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEEe
Q 017553 115 VSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG 194 (369)
Q Consensus 115 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 194 (369)
....-.+..-..-...|..++... ...+.-. ||.|..|-......+-.-. .....|..++... . ..++ -.
T Consensus 88 ~n~~Gqlg~P~~~~~~v~~ia~G~---~hs~al~-~G~v~~wG~n~~gqlg~~~---~~~~~i~~i~~G~-~-~~~~-l~ 157 (282)
T 3qhy_B 88 GNEDGQTTVPAEARSGVDAIAAGA---WASYALK-DGKVIAWGDDSDGQTTVPA---EAQSGVTALDGGV-Y-TALA-VK 157 (282)
T ss_dssp CCTTSTTCCCGGGSSSEEEEEEET---TEEEEEE-TTEEEEEECCTTSTTSCCG---GGGSSEEEEEECS-S-EEEE-EE
T ss_pred CCCCCCCCCCcccCCCeEEEECcC---CEEEEEe-CCeEEEecCCCCCcCCCCc---cCCCCeEEEEccc-C-EEEE-EE
Confidence 654322211111134677777754 2333334 8999999765422211111 2334677777653 2 2233 33
Q ss_pred eCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeeeeeCcEEEEeecCCeEEEecCCCCCCCC
Q 017553 195 MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSP 274 (369)
Q Consensus 195 ~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 274 (369)
||.|..|-........ .|. .-...|..++-.....+.- .||.+..|-.....+..
T Consensus 158 -~G~v~~wG~n~~gqlg-------------------~p~----~~~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg 212 (282)
T 3qhy_B 158 -NGGVIAWGDNYFGQTT-------------------VPA----EAQSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTT 212 (282)
T ss_dssp -TTEEEEEECCTTSTTS-------------------CCG----GGGSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTC
T ss_pred -CCEEEEecCCCCCCCC-------------------Cce----ecCCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCC
Confidence 7999999776521110 000 0023355555444444444 69999999876554321
Q ss_pred CCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCC
Q 017553 275 GEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDG 349 (369)
Q Consensus 275 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 349 (369)
.. .. ....|..++..... .++.. ||.|+.|-.....+..+ ...|.+++....-
T Consensus 213 ~p-----~~----~~~~v~~i~~G~~h---~~al~--~g~v~~wG~n~~gq~~v--------~~~v~~iaaG~~h 265 (282)
T 3qhy_B 213 VP-----TE----ALSGVSAIASGEWY---SLALK--NGKVIAWGSSRTAPSSV--------QSGVSSIEAGPNA 265 (282)
T ss_dssp CC-----GG----GGSSCCEEEECSSC---EEEEE--TTEEEEESTTCCCCGGG--------SSCEEEEEECSSC
T ss_pred CC-----cc----cCCCceEEEcCCCE---EEEEE--CCEEEEecCCCCccccC--------CCCcEEEEECcCe
Confidence 10 00 11345555544332 34433 89999997665432211 1357777766553
No 346
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=89.94 E-value=8.2 Score=36.75 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=24.9
Q ss_pred CCCccEEEEeecCCeEEEEEcCCcccccee
Q 017553 95 VDGIPFLVAGGINGIIRVIDVSNEKLHKSF 124 (369)
Q Consensus 95 ~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~ 124 (369)
++.. ++++-+.|+++|+|++.+++++.+.
T Consensus 245 ~~~~-~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 245 STYN-VLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp TTTT-EEEEEETTCEEEEEETTTTEEEEEE
T ss_pred CCCc-EEEEEECCCEEEEEECCCCCeEeee
Confidence 6666 9999999999999999999877654
No 347
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=89.71 E-value=8 Score=32.25 Aligned_cols=187 Identities=10% Similarity=0.012 Sum_probs=86.0
Q ss_pred ccccccccccccccccc-ccceeeeeecccCCcCeEEEEEeeccCCCccEEEEecCC--cEEEEEec-CCceeEEEeee-
Q 017553 3 RTAIGCEPLVGSLTPSK-KREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGN--RVTVYQCL-EGGVIAALQSY- 77 (369)
Q Consensus 3 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~~~la~~~~~--~v~iw~~~-~~~~~~~~~~~- 77 (369)
++.+|+......+.... ...|+..... .....|.+|++.|.+ .+.+++.+..+ +-.||... .+.....+...
T Consensus 24 ~l~vgt~~Gl~~~~~~~~g~~W~~~~~~-~~~~~v~~i~~dp~~--~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~ 100 (394)
T 3b7f_A 24 MLLVATIKGAWFLASDPARRTWELRGPV-FLGHTIHHIVQDPRE--PERMLMAARTGHLGPTVFRSDDGGGNWTEATRPP 100 (394)
T ss_dssp EEEEEETTEEEEEEECTTSCSEEEEEEE-STTSEEEEEEECSSS--TTCEEEEEEC--CCEEEEEESSTTSCCEECSBCC
T ss_pred EEEEEecCceEEEECCCCCCCceECCcc-CCCCceEEEEECCCC--CCeEEEEecCCCCCccEEEeCCCCCCceECCccc
Confidence 34455544433333221 1355543211 124569999999843 25666665544 12344433 34433333211
Q ss_pred --ccCC------cccceeEEEeeecCC--CccEEEEeecCCeEEEEEcCCccccceeec-------------------cc
Q 017553 78 --VDED------KEESFYTVSWACNVD--GIPFLVAGGINGIIRVIDVSNEKLHKSFVG-------------------HG 128 (369)
Q Consensus 78 --~~~~------~~~~v~~~~~~~~~~--g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-------------------~~ 128 (369)
.... ....|..+++. |. .. .|.++...+.|...+ +.++.-..+.. ..
T Consensus 101 ~~~~~~~~~~~~~~~~i~~l~~~--~~~~~~-~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~ 176 (394)
T 3b7f_A 101 AFNKAPEGETGRVVDHVFWLTPG--HASEPG-TWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDG 176 (394)
T ss_dssp CCCCCC----CCCCCEEEEEEEC--CTTSTT-CEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCC
T ss_pred cCCCcccccccccccceeEEEeC--CCCCCC-EEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCC
Confidence 0000 11246566665 42 23 466666666555443 22222111110 12
Q ss_pred cceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeec-cCC-C--------CCcEEEEEecCCCceEEEEEeeCC
Q 017553 129 DSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAG-AGG-H--------RNEVLSVDFHPSDIYRIASCGMDN 197 (369)
Q Consensus 129 ~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~-~--------~~~v~~~~~~~~~~~~l~~~~~d~ 197 (369)
..+.+|.+.|.+...|+.+..++.|...+ ..++....+.. ... + ...+.++.++|.+...++.+...+
T Consensus 177 ~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g 254 (394)
T 3b7f_A 177 PKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG 254 (394)
T ss_dssp CEEEEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred CceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence 35789999885455555555444443332 22333222221 000 0 134889999984445566665443
No 348
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=89.22 E-value=9.8 Score=32.59 Aligned_cols=105 Identities=12% Similarity=0.170 Sum_probs=56.7
Q ss_pred eEEEeeecCCCccEEEEeecCCeEEEEEcCCccc--cceeec------cccceEEEEecCC---CCceEEEEeC------
Q 017553 87 YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL--HKSFVG------HGDSINEIRTQPL---KPSLVVSASK------ 149 (369)
Q Consensus 87 ~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~------~~~~v~~~~~~~~---~~~~l~s~~~------ 149 (369)
..++|. |+|+ ++++-...+.|++++..+++. +..+.. .......|+|+|+ ++.+.++-+.
T Consensus 30 ~~~a~~--pdG~-l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 30 HALLWG--PDNQ-IWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp EEEEEC--TTSC-EEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred eEEEEc--CCCc-EEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 356666 9998 666554445788887654432 222211 2356779999994 3444444332
Q ss_pred ------CCcEEEEEccCC--c---EEEEeecc-CCCCCcEEEEEecCCCceEEEEEee
Q 017553 150 ------DESVRLWNVQTG--I---CILIFAGA-GGHRNEVLSVDFHPSDIYRIASCGM 195 (369)
Q Consensus 150 ------dg~i~vwd~~~~--~---~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~ 195 (369)
...|.-++...+ . ....+... .........|+|.| ++.++++.+.
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEECC
Confidence 234555655432 1 11111111 11223468899999 7777776554
No 349
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=88.94 E-value=8.2 Score=31.33 Aligned_cols=105 Identities=10% Similarity=0.070 Sum_probs=65.5
Q ss_pred CCccEEEEeecCCeEEEEEcCCcc-------ccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEcc--CCcE---
Q 017553 96 DGIPFLVAGGINGIIRVIDVSNEK-------LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ--TGIC--- 163 (369)
Q Consensus 96 ~g~~~l~~~~~dg~i~vwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~--~~~~--- 163 (369)
+.. +++..+.+|.|+.-.+..-. ....++.. +.+..+.... ....|+..+..|.+..+... .-..
T Consensus 108 ~e~-~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~-D~lv~~~~~~-~~d~ill~T~~G~~~rf~~~~~eip~~gr 184 (327)
T 3uc1_A 108 DAP-YLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDN-DELVGAVLCS-AGDDLLLVSANGQSIRFSATDEALRPMGR 184 (327)
T ss_dssp SSS-EEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTT-CCEEEEEEEC-TTCEEEEEETTSEEEEEECCTTTSCCCCT
T ss_pred CCC-EEEEEcCCCEEEEeEHHHhhccccCceEEEEECCC-CEEEEEEEec-CCCEEEEEECCCeEEEEECcccccCcCCc
Confidence 345 89999999999998875532 22233333 4444444444 44567777888988888765 2110
Q ss_pred ----EEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccC
Q 017553 164 ----ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206 (369)
Q Consensus 164 ----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~ 206 (369)
+..+. + .....|.++...+ .+..++..+..|.++.-.+..
T Consensus 185 ~a~Gv~~i~-L-~~~d~Vv~~~~~~-~~~~ll~~T~~G~~Krt~l~e 228 (327)
T 3uc1_A 185 ATSGVQGMR-F-NIDDRLLSLNVVR-EGTYLLVATSGGYAKRTAIEE 228 (327)
T ss_dssp TSBCEESSC-C-CTTCCEEEEEECC-TTCEEEEEETTSEEEEEEGGG
T ss_pred CCCCeeeec-C-CCCCEEEEEEEEC-CCCEEEEEeCCCcEEEEEHHH
Confidence 11111 1 2345677766655 556788888999998887765
No 350
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=88.58 E-value=12 Score=32.88 Aligned_cols=74 Identities=14% Similarity=0.090 Sum_probs=53.1
Q ss_pred CCeeEEEEeecCCccEEEEecCCCeEEEEEccCC------C-----ceeEEEeecCCCccceEEEEecCCCCEEEEeecC
Q 017553 290 CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS------P-----PVLIARLSHAQSKSPIRQTAMSYDGSTILSCCED 358 (369)
Q Consensus 290 ~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~------~-----~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 358 (369)
.....+.++|||++ +++.|--+.++.++|+..- + .......+ -.-.....+|.++|....|---|
T Consensus 323 ksPHGv~vsPDGky-i~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e---~GlGPlHt~Fd~~G~aYTtlfid 398 (638)
T 3sbq_A 323 KNPHGCNTSSDGKY-FIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE---LGLGPLHTTFDGRGNAYTTLFID 398 (638)
T ss_dssp SSCCCEEECTTSCE-EEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB---CCSCEEEEEECSSSEEEEEETTT
T ss_pred CCCcceeeCCCCCE-EEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc---CCCcccEEEECCCCceEeeeeec
Confidence 44567899999983 6667778999999998841 1 11223332 12456789999999666666689
Q ss_pred CeEEEEecC
Q 017553 359 GAIWRWDAI 367 (369)
Q Consensus 359 g~i~vw~~~ 367 (369)
..|.-|++.
T Consensus 399 SqvvkWni~ 407 (638)
T 3sbq_A 399 SQVVKWNME 407 (638)
T ss_dssp TEEEEEEHH
T ss_pred ceEEEEecc
Confidence 999999975
No 351
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=88.25 E-value=12 Score=32.23 Aligned_cols=117 Identities=9% Similarity=0.011 Sum_probs=59.2
Q ss_pred eeeeeee--Cc-EEEEeecCCeEEEecCCCCCCC-CCCCccceeeec--cCCCCCeeEEEEeec---CCccEEEEec-CC
Q 017553 243 VDCNRWL--GD-FILSKSVDNEIVLWEPKMKEQS-PGEGTADILQKY--PVPECDIWFIKFSCD---FHYNAAAIGN-RE 312 (369)
Q Consensus 243 v~~~~~~--~~-~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~--~~~~~~i~~~~~s~~---~~~~~l~~~~-~d 312 (369)
...|+|. ++ .++++...|.|++++....... ........+..- ...+.....++|+|+ ....+++-.. .+
T Consensus 16 P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~~ 95 (463)
T 2wg3_C 16 PVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQE 95 (463)
T ss_dssp EEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECCC
T ss_pred ceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCCC
Confidence 4566665 43 4666788999999975432110 000000000000 012456788999996 2223333222 11
Q ss_pred ----------CeEEEEEccCC--------CceeEEEeecCCCccceEEEEecCCCCEEEEeecCC
Q 017553 313 ----------GKIFVWELQSS--------PPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDG 359 (369)
Q Consensus 313 ----------g~i~i~d~~~~--------~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 359 (369)
..|.-|.+... +.+.+..+........-..|+|.|||.+.++.+..+
T Consensus 96 ~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 96 RWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp SSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred CcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 24555666431 123333333222223467899999998877766543
No 352
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=88.06 E-value=13 Score=32.67 Aligned_cols=65 Identities=17% Similarity=0.159 Sum_probs=46.5
Q ss_pred cCCCccEEEEeecCCeEEEEEcCCccc-------------cceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccC
Q 017553 94 NVDGIPFLVAGGINGIIRVIDVSNEKL-------------HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 160 (369)
Q Consensus 94 ~~~g~~~l~~~~~dg~i~vwd~~~~~~-------------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 160 (369)
+|||+.++++|-.+.++.++|++.... ..... -.-.....+|.+ +++...+---|..|.-|++..
T Consensus 331 sPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 331 SSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RGNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp CTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SSEEEEEETTTTEEEEEEHHH
T ss_pred CCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CCceEeeeeecceEEEEeccH
Confidence 499997777788899999999875321 11111 123457889999 776666667899999999974
No 353
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=86.72 E-value=11 Score=30.21 Aligned_cols=65 Identities=9% Similarity=0.215 Sum_probs=34.3
Q ss_pred eeeeeCcEEEEeec-CCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEe--cCCCeEEEEEcc
Q 017553 245 CNRWLGDFILSKSV-DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG--NREGKIFVWELQ 321 (369)
Q Consensus 245 ~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~--~~dg~i~i~d~~ 321 (369)
.+.|.++.|+-.+. ...|...++..... +.+ .. ... ...+.|+++ +|+-. .....|..-++.
T Consensus 151 ~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~-------~~l--~~---~~~-~~~~~P~g~--~iy~t~~~~~~~I~~~~ld 215 (302)
T 3s25_A 151 TCNTSDRYFYYNNPKNGQLYRYDTASQSE-------ALF--YD---CNC-YKPVVLDDT--NVYYMDVNRDNAIVHVNIN 215 (302)
T ss_dssp CSEEETTEEEEECTTTCCEEEEETTTTEE-------EEE--EC---SCE-EEEEEEETT--EEEEEEGGGTTEEEEECSS
T ss_pred EeeEECCEEEEEeCCCceEEEEECCCCCE-------EEE--eC---CCc-cceeeecCC--EEEEEEcCCCcEEEEEECC
Confidence 34666776665544 56787777765531 011 11 111 234668887 33322 222467777776
Q ss_pred CCC
Q 017553 322 SSP 324 (369)
Q Consensus 322 ~~~ 324 (369)
...
T Consensus 216 G~~ 218 (302)
T 3s25_A 216 NPN 218 (302)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 354
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=84.56 E-value=4.4 Score=35.56 Aligned_cols=73 Identities=18% Similarity=0.155 Sum_probs=51.8
Q ss_pred CeeEEEEeecCCccEEEEecCCCeEEEEEccCCCc--eeEEEeecCCCccceE-EEEecCCCCEEEEeecCCeEEE
Q 017553 291 DIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP--VLIARLSHAQSKSPIR-QTAMSYDGSTILSCCEDGAIWR 363 (369)
Q Consensus 291 ~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~v~-~~~~s~~~~~l~s~~~dg~i~v 363 (369)
..++++....+.+.++..|+.+|.|.-..+..... .....+.......+|. .|.+++++.+|.+++.++.++|
T Consensus 401 ~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 401 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred ceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 46777777777778899999999987766654321 2333443323346785 8999999999999988876654
No 355
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=84.21 E-value=4.8 Score=34.85 Aligned_cols=73 Identities=14% Similarity=0.120 Sum_probs=48.4
Q ss_pred CeeEEEEeec----CCccEEEEecCCCeEEEEEccCCC------ceeEEEeecCCCccceEEEEecCCCCEEEEeecCCe
Q 017553 291 DIWFIKFSCD----FHYNAAAIGNREGKIFVWELQSSP------PVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGA 360 (369)
Q Consensus 291 ~i~~~~~s~~----~~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 360 (369)
..++++...- +.+.++..|+.+|.|.-.-+.... ...+..+.......+|..|.++++..+|..++.++.
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V 484 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 484 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeE
Confidence 3566666543 666788899999987655443221 123334442233478999999999999999998887
Q ss_pred EEE
Q 017553 361 IWR 363 (369)
Q Consensus 361 i~v 363 (369)
++|
T Consensus 485 ~~v 487 (495)
T 1q47_A 485 AQL 487 (495)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 356
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=81.87 E-value=33 Score=31.89 Aligned_cols=157 Identities=8% Similarity=0.038 Sum_probs=76.5
Q ss_pred CcCeEEEEEeeccCCCccEEEEecCCcEEEEEecCCceeEEEeeeccCC--cccceeEEEeeecCCCccEEEEeecCCe-
Q 017553 33 KRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDED--KEESFYTVSWACNVDGIPFLVAGGINGI- 109 (369)
Q Consensus 33 ~~~v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~g~~~l~~~~~dg~- 109 (369)
.+.|.+|+++|.++ +.++|.+...+|...+ ..|+....+....... ....+..+++. |.....++++..+..
T Consensus 14 ~g~i~~i~~~p~~~--~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~d--p~~~~~i~~~~g~~~~ 88 (789)
T 1sqj_A 14 GGYITGIVAHPKTK--DLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALD--PNNPDRLYLAQGRYVG 88 (789)
T ss_dssp CSCEEEEEECSSST--TCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEE--TTEEEEEEEEECSCTT
T ss_pred CCcEEEEEECCCCC--CEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEEC--CCCCCEEEEEeCccCC
Confidence 46899999999542 3444444344465554 4555554433211000 23468888877 533224444432211
Q ss_pred ---EEEEEc-CCccccceeec---------cccceEEEEecCCCCceEEEEeCCCcEEEEEccC-CcEEEEeeccC---C
Q 017553 110 ---IRVIDV-SNEKLHKSFVG---------HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT-GICILIFAGAG---G 172 (369)
Q Consensus 110 ---i~vwd~-~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~---~ 172 (369)
-.||.- +.++.-..+.. ....+..+++.|.+...++.+...+.| |--.. |+.-..+.... .
T Consensus 89 ~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl--~~S~DgG~TW~~~~~~~~~~~ 166 (789)
T 1sqj_A 89 DEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGI--WKSSDRAKTWTNVTSIPDAFT 166 (789)
T ss_dssp SSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCE--EEESSTTSSCEEETTSCCCCS
T ss_pred CcccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCE--EEECCCCcccCCCccCccccC
Confidence 233332 33322111110 011356788888666677777644443 33333 33333332110 1
Q ss_pred CCCcEEEEEecCCCceEEEEEeeC
Q 017553 173 HRNEVLSVDFHPSDIYRIASCGMD 196 (369)
Q Consensus 173 ~~~~v~~~~~~~~~~~~l~~~~~d 196 (369)
....+..+.++|.++..++.+..+
T Consensus 167 ~~~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 167 NGIGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp TTTCEEEEEECTTSTTCEEEEESS
T ss_pred CCCCeEEEEECCCCCCEEEEEEcC
Confidence 124578899988555566666554
No 357
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=78.62 E-value=18 Score=32.61 Aligned_cols=72 Identities=15% Similarity=0.185 Sum_probs=46.7
Q ss_pred eeEEEEe----ecCCccEEEEecCCCeEEEE-EccCCC-----ceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeE
Q 017553 292 IWFIKFS----CDFHYNAAAIGNREGKIFVW-ELQSSP-----PVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAI 361 (369)
Q Consensus 292 i~~~~~s----~~~~~~~l~~~~~dg~i~i~-d~~~~~-----~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 361 (369)
.+.++.. .++++.++..|+.+|.|.-. -..... ...+.++.......+|..|.++++.+.|.+++.++.+
T Consensus 414 lT~IaVd~v~~~~g~ytVlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~ 493 (667)
T 4gz8_A 414 FTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVA 493 (667)
T ss_dssp EEEEEEEEEECSSCEEEEEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEE
T ss_pred eeEEEEEEEecCCCcEEEEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEE
Confidence 3455543 34556688899999998633 222211 1233344433455789999999999999999988876
Q ss_pred EE
Q 017553 362 WR 363 (369)
Q Consensus 362 ~v 363 (369)
+|
T Consensus 494 kV 495 (667)
T 4gz8_A 494 QL 495 (667)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 358
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=77.77 E-value=26 Score=28.35 Aligned_cols=244 Identities=9% Similarity=0.023 Sum_probs=121.9
Q ss_pred EEEEeecCCeEEEEEcCCccc---------cceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEc---cC------C
Q 017553 100 FLVAGGINGIIRVIDVSNEKL---------HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV---QT------G 161 (369)
Q Consensus 100 ~l~~~~~dg~i~vwd~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~---~~------~ 161 (369)
++++.+.+|.|+--.+.+-+. -..++. .+.+..+.... ....|+.-+..|.++-... .. |
T Consensus 5 v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke-~D~~~~~~~~~-t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G 82 (327)
T 3uc1_A 5 VVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQ-DDIVAHFFVCS-THDLILFFTTQGRVYRAKAYDLPEASRTARG 82 (327)
T ss_dssp EEEEEETTSEEEEEEHHHHHHHC--------CCCCG-GGCEEEEEEEE-TTSEEEEEETTSEEEEEEGGGSCBCCSSSCC
T ss_pred EEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCC-CCEEEEEEEeC-CCCEEEEEeCCCeEEEEEHHHCcCCCccCCC
Confidence 788888999998776543211 112222 23444444333 4455555666777665543 21 2
Q ss_pred cEEEEeeccCCCCCcEEEEEecCC--CceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccC
Q 017553 162 ICILIFAGAGGHRNEVLSVDFHPS--DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH 239 (369)
Q Consensus 162 ~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (369)
.++..+-.+ .....|.++...+. +...++..+.+|.++-..+......... ......+..
T Consensus 83 ~~i~~~l~l-~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~----------------G~~~i~lke- 144 (327)
T 3uc1_A 83 QHVANLLAF-QPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSG----------------GIVAVNLRD- 144 (327)
T ss_dssp EEHHHHTTC-CTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSS----------------CEESCBCCT-
T ss_pred EEHHHccCC-CCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccC----------------ceEEEEECC-
Confidence 222111111 13445655544321 4678999999999999888763211100 011111222
Q ss_pred CCceeeeee-e-CcEEEEeecCCeEEEecCC--CCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeE
Q 017553 240 SNYVDCNRW-L-GDFILSKSVDNEIVLWEPK--MKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKI 315 (369)
Q Consensus 240 ~~~v~~~~~-~-~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i 315 (369)
.+.+..+.. + .+.++..+..|.+..+... .-..............+.. ...|.++...++.. .++..+..|.+
T Consensus 145 ~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~-~d~Vv~~~~~~~~~--~ll~~T~~G~~ 221 (327)
T 3uc1_A 145 NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNI-DDRLLSLNVVREGT--YLLVATSGGYA 221 (327)
T ss_dssp TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCT-TCCEEEEEECCTTC--EEEEEETTSEE
T ss_pred CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCC-CCEEEEEEEECCCC--EEEEEeCCCcE
Confidence 222332222 2 5577778889998888776 2211111001111112222 34455555544443 78888899999
Q ss_pred EEEEccCCCc-----eeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEec
Q 017553 316 FVWELQSSPP-----VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 366 (369)
Q Consensus 316 ~i~d~~~~~~-----~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~ 366 (369)
+.-.+..-.. .-+..+......+.+..+....+...++..+.+|.+..++.
T Consensus 222 Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~ 277 (327)
T 3uc1_A 222 KRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAA 277 (327)
T ss_dssp EEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEG
T ss_pred EEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEeh
Confidence 9888754321 11222221121234555444444455555667777666554
No 359
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=77.67 E-value=27 Score=31.79 Aligned_cols=31 Identities=6% Similarity=0.392 Sum_probs=27.4
Q ss_pred CceeeeeeeCcEEEEeecCCeEEEecCCCCC
Q 017553 241 NYVDCNRWLGDFILSKSVDNEIVLWEPKMKE 271 (369)
Q Consensus 241 ~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 271 (369)
..|.++.+...++++-+.|.++|+|+++++.
T Consensus 222 ~~Is~~~~~~~fLftL~~Dh~LRiWsL~t~~ 252 (729)
T 3f7f_A 222 SVISCKLFHERYLIVLTQNCHLKIWDLTSFT 252 (729)
T ss_dssp CEEEEEEETTTEEEEEETTCEEEEEETTTTE
T ss_pred ceEEEeccCCcEEEEEEcCCeEEEEEcCCCc
Confidence 4677777778899999999999999999886
No 360
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=75.00 E-value=14 Score=32.25 Aligned_cols=72 Identities=13% Similarity=0.061 Sum_probs=49.1
Q ss_pred CeeEEEEeecCCccEEEEecCCCeEEEEEcc-CCCceeEEEeecCCCccce-EEEEecCCCCEEEEeecCCeEEE
Q 017553 291 DIWFIKFSCDFHYNAAAIGNREGKIFVWELQ-SSPPVLIARLSHAQSKSPI-RQTAMSYDGSTILSCCEDGAIWR 363 (369)
Q Consensus 291 ~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~s~~~dg~i~v 363 (369)
..+.++...-..+.++..|+.+|.|.-.-+. +........+.. ....+| ..|.++++...|..++.++.++|
T Consensus 388 ~lT~IaVd~~~g~tV~FlGT~~G~l~Kv~~~~~~~~~~~ee~~v-~~~~pi~~~l~l~~~~~~Lyv~s~~~V~~v 461 (528)
T 3ol2_B 388 QLTAVAVTMEDGHTIAFLGDSQGQLHRVYLGPGSDGHPYSTQSI-QQGSAVSRDLTFDGTFEHLYVMTQSTLLKV 461 (528)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEECSSSCCSCCSEEEES-STTSCCCSCCEECTTSSEEEEECSSCEEEE
T ss_pred ceEEEEEEeecCeEEEEEECCCCeEEEEEEcCCCCeeEEeeecc-CCCCcceeeEEEecCCCEEEEEeCCEEEEE
Confidence 3667776665556788889999998765554 222223333332 334677 48999999999999998887765
No 361
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=74.33 E-value=36 Score=28.21 Aligned_cols=144 Identities=8% Similarity=-0.079 Sum_probs=69.7
Q ss_pred cEEEEecCCcEEEEEecC-CceeEEEeeeccCCcccceeEEEeeecCCCccEEEEeecCC----eEEEEEcCCcccccee
Q 017553 50 NVFATVGGNRVTVYQCLE-GGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGING----IIRVIDVSNEKLHKSF 124 (369)
Q Consensus 50 ~~la~~~~~~v~iw~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~~dg----~i~vwd~~~~~~~~~~ 124 (369)
..|..+...++.+++... +.....+... .....|.++++.+..++. |.+++..| .|...+ +.++.-..+
T Consensus 23 g~l~vgt~~Gl~~~~~~~~g~~W~~~~~~---~~~~~v~~i~~dp~~~~~--l~~g~~~g~~g~gl~~s~-D~G~tW~~~ 96 (394)
T 3b7f_A 23 VMLLVATIKGAWFLASDPARRTWELRGPV---FLGHTIHHIVQDPREPER--MLMAARTGHLGPTVFRSD-DGGGNWTEA 96 (394)
T ss_dssp CEEEEEETTEEEEEEECTTSCSEEEEEEE---STTSEEEEEEECSSSTTC--EEEEEEC--CCEEEEEES-STTSCCEEC
T ss_pred CEEEEEecCceEEEECCCCCCCceECCcc---CCCCceEEEEECCCCCCe--EEEEecCCCCCccEEEeC-CCCCCceEC
Confidence 345555566777776543 2333333211 234568888877211454 55555454 444332 233221111
Q ss_pred e------c--------cccceEEEEecCCC-CceEEEEeCCCcEEEEEccCCcEEEEeeccC----------------CC
Q 017553 125 V------G--------HGDSINEIRTQPLK-PSLVVSASKDESVRLWNVQTGICILIFAGAG----------------GH 173 (369)
Q Consensus 125 ~------~--------~~~~v~~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~----------------~~ 173 (369)
. . ....|.++++.|.+ ...+..+...+.|...+ ..++.-..+.... ..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~ 175 (394)
T 3b7f_A 97 TRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPD 175 (394)
T ss_dssp SBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CC
T ss_pred CccccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCC
Confidence 1 1 11257889998744 56677666666554432 2233322222100 12
Q ss_pred CCcEEEEEecCCCceEEEEEeeCCcEE
Q 017553 174 RNEVLSVDFHPSDIYRIASCGMDNTVK 200 (369)
Q Consensus 174 ~~~v~~~~~~~~~~~~l~~~~~d~~v~ 200 (369)
...+.+|.++|.+...++.+..++.|.
T Consensus 176 ~~~i~~i~~d~~~~~~l~vg~~~ggl~ 202 (394)
T 3b7f_A 176 GPKMHSILVDPRDPKHLYIGMSSGGVF 202 (394)
T ss_dssp CCEEEEEEECTTCTTCEEEEEETBEEE
T ss_pred CCceeEEEECCCCCCEEEEEECCCCEE
Confidence 346789999874444455555444443
No 362
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=74.24 E-value=24 Score=31.94 Aligned_cols=72 Identities=13% Similarity=0.098 Sum_probs=46.7
Q ss_pred eeEEEEe----ecCC-ccEEEEecCCCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCC--CEEEEeecCCeEEE
Q 017553 292 IWFIKFS----CDFH-YNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDG--STILSCCEDGAIWR 363 (369)
Q Consensus 292 i~~~~~s----~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~s~~~dg~i~v 363 (369)
.+.++.. .+++ +.++..|+.+|.|.-.-........+..+.......+|..|.++++. .+|.+++.++.++|
T Consensus 399 ~T~iaVd~v~~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~ee~~~~~~~~pI~~l~l~~~~~~~~Lyv~s~~~V~~v 477 (663)
T 1olz_A 399 YTQIVVDRTQALDGTVYDVMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQA 477 (663)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEETTSEEEEEEECSSSEEEEEEEECCTTCCCCCEEEECCSSSSCEEEEECSSCEEEE
T ss_pred eEEEEEEEEeccCCCceEEEEEEcCCcEEEEEEecCCCceEEEEecccCCCCcceeeEeccCCCccEEEEEEcCeEEEE
Confidence 4566653 2332 46788899999985543333322344444433445789999999988 89999988876665
No 363
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=73.02 E-value=16 Score=32.47 Aligned_cols=59 Identities=7% Similarity=-0.077 Sum_probs=38.7
Q ss_pred eeEEEEeecCCccEEEEecC------------CCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEe
Q 017553 292 IWFIKFSCDFHYNAAAIGNR------------EGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSC 355 (369)
Q Consensus 292 i~~~~~s~~~~~~~l~~~~~------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 355 (369)
.-.|+|++.+. ++++-.. ++.+.+.+..+++...+..- ...+.++.++|+||++.|.+.
T Consensus 478 PDNL~fd~~G~--LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~---P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGR--LWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG---PIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCC--EEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEEC---CTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCC--EEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeC---CCCccCcCeeECCCCCEEEEE
Confidence 45689999986 4443221 23566667667754333332 344799999999999988765
No 364
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=72.17 E-value=24 Score=33.59 Aligned_cols=37 Identities=11% Similarity=0.266 Sum_probs=29.2
Q ss_pred CeEEEEEeeccCCCccEEEEecCCc-EEEEEecCCceeEEEe
Q 017553 35 PLYAVVFNFIDSRYFNVFATVGGNR-VTVYQCLEGGVIAALQ 75 (369)
Q Consensus 35 ~v~~~~~s~~~~~~~~~la~~~~~~-v~iw~~~~~~~~~~~~ 75 (369)
.|.+++..+ +..++.+-+.|+ +++|++.+++.+....
T Consensus 237 ~~~~~~~~~----~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLS----TYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEET----TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecC----CCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 466677666 467888888888 9999999999887754
No 365
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=71.76 E-value=17 Score=35.44 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=24.7
Q ss_pred CCCccEEEEeecCCeEEEEEcCCcccccee
Q 017553 95 VDGIPFLVAGGINGIIRVIDVSNEKLHKSF 124 (369)
Q Consensus 95 ~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~ 124 (369)
++.. ++++-+.|+++|+|++.+++++.+.
T Consensus 247 ~~~~-~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 247 STYN-VLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp TTTT-EEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred CCcc-EEEEEeCCCEEEEEECCCCCeEEee
Confidence 5556 9999999999999999999876654
No 366
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=71.30 E-value=64 Score=29.71 Aligned_cols=113 Identities=7% Similarity=0.038 Sum_probs=56.2
Q ss_pred cCeEEEEEeeccCCCccEEEEecCCcEEEEEecCCceeEEEeeeccCC--cccceeEEEeeecCCCccEEEEeec-C---
Q 017553 34 RPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDED--KEESFYTVSWACNVDGIPFLVAGGI-N--- 107 (369)
Q Consensus 34 ~~v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~g~~~l~~~~~-d--- 107 (369)
+.|.+|+++|.++ +.++|....++|...+ ..++....+....... ....|..+++.+...+. +++..+. .
T Consensus 23 g~i~~i~~~p~~~--~~~~~~~~~ggv~rS~-D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~-v~v~~~~~~~~~ 98 (737)
T 2cn3_A 23 GFMPGIVFNETEK--DLIYARAAIGGAYRWD-PSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNR-VYIVAGMYTNDW 98 (737)
T ss_dssp SCCCEEEECSSST--TCEEEECSSSCEEEEE-TTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTC-EEEEECSCSSSS
T ss_pred ceeeEEEECCCCC--CEEEEEecCCcEEEeC-CCCCCEEECcCccCcccccCCCcceEEeCCCCCCE-EEEEeccccccc
Confidence 3899999999642 3455444344466555 4555544433211000 12457788887322233 3333321 1
Q ss_pred --CeEEEEEcCC-ccccceeec-c--------ccceEEEEecCCCCceEEEEeCC
Q 017553 108 --GIIRVIDVSN-EKLHKSFVG-H--------GDSINEIRTQPLKPSLVVSASKD 150 (369)
Q Consensus 108 --g~i~vwd~~~-~~~~~~~~~-~--------~~~v~~~~~~~~~~~~l~s~~~d 150 (369)
+...||.-.+ ++.-..+.. . ...+..|+++|.+...++.+...
T Consensus 99 ~~~~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~ 153 (737)
T 2cn3_A 99 LPNMGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRC 153 (737)
T ss_dssp SCCCCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECST
T ss_pred ccCCccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeecc
Confidence 1244554433 332222110 0 01246799999777777777643
No 367
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=70.75 E-value=19 Score=31.78 Aligned_cols=62 Identities=6% Similarity=-0.078 Sum_probs=39.1
Q ss_pred CeeEEEEeecCCccEEEEecC-----------CCeEEEEEccCCCceeEEEeecCCCccceEEEEecCCCCEEEEee
Q 017553 291 DIWFIKFSCDFHYNAAAIGNR-----------EGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCC 356 (369)
Q Consensus 291 ~i~~~~~s~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 356 (369)
....|.|.++|. .++.+-.. .+.|..++..+++...+. . ......++.++|+||++.|.++-
T Consensus 477 sPDnL~fd~~G~-LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl--~-~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGR-LWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFM--V-GPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCC-EEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEE--E-CCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCC-EEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEE--e-CCCCccccCCEECCCCCEEEEEE
Confidence 456789999985 23323221 236777777777533332 2 12236799999999999887753
No 368
>3oky_A Plexin-A2; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okt_A* 4gza_A
Probab=69.60 E-value=19 Score=32.58 Aligned_cols=73 Identities=19% Similarity=0.185 Sum_probs=49.8
Q ss_pred CeeEEEEeecCCccEEEEecCCCeEEEEEccCCC--ceeEEEeecCCCccce-EEEEecCCCCEEEEeecCCeEEE
Q 017553 291 DIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP--PVLIARLSHAQSKSPI-RQTAMSYDGSTILSCCEDGAIWR 363 (369)
Q Consensus 291 ~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~s~~~dg~i~v 363 (369)
..++++....+.+..+..|+.+|.|.-.-+.... ...+..+.......+| ..|.++++..+|..++.++.++|
T Consensus 400 ~lT~VaV~~~~~~tVlFLGT~~G~l~Kv~~~~~~~~~~~~ee~~v~~~~~pI~~~l~l~~~~~~Lyv~s~~~V~qv 475 (681)
T 3oky_A 400 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 475 (681)
T ss_dssp CBCCCEEEEETTEEEEEEEBTTSEEEEEECCCTTTCCEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred ceEEEEEEecCceEEEEEECCCceEEEEEECCCCCceEEEEEeeeccCCCceeeeeEEcCCCCEEEEEecCEEEEE
Confidence 4566777666666788899999998765554321 2334444322234676 68999999889998888876665
No 369
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=69.33 E-value=50 Score=27.74 Aligned_cols=251 Identities=12% Similarity=-0.050 Sum_probs=117.1
Q ss_pred EEEEeecCCeEEEEEcCCc-cc------------cceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEc--cC-CcE
Q 017553 100 FLVAGGINGIIRVIDVSNE-KL------------HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV--QT-GIC 163 (369)
Q Consensus 100 ~l~~~~~dg~i~vwd~~~~-~~------------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~--~~-~~~ 163 (369)
..+.-..||.|+.|-.... ++ ...+. ....|..|+.. ....+.-..||.|+.|-. .. ++.
T Consensus 86 h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~-~~~~i~~va~G---~~hs~al~~~G~v~~wG~~~n~~Gql 161 (423)
T 3mvd_K 86 HNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLID-LPGKALCISAG---DSHSACLLEDGRVFAWGSFRDSHGNM 161 (423)
T ss_dssp EEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECC-CSSCEEEEEEC---SSEEEEEETTSCEEEEECEECSSSEE
T ss_pred eEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEc-CCCCEEEEEcC---cCeEEEEeCCCeEEEEeCCCCCCCCc
Confidence 5666678899999975431 11 00111 12356666653 345555678999999985 22 221
Q ss_pred --------EEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceee
Q 017553 164 --------ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI 235 (369)
Q Consensus 164 --------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (369)
...... .....|..++.. ..+.+.-..+|.|+.|-.......-....................|...
T Consensus 162 G~~~~~~~~~p~~~--~~~~~i~~va~G---~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v 236 (423)
T 3mvd_K 162 GLTIDGNKRTPIDL--MEGTVCCSIASG---ADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQL 236 (423)
T ss_dssp ESBTTBCEEEEEES--STTCCEEEEEEC---SSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEE
T ss_pred CcCCCCCCceeeEe--cCCCcEEEEecC---CCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEE
Confidence 111111 133457777764 3455556679999999765421111000000000000000011112222
Q ss_pred eccCCCceeeeeeeCcEEEEe-ecCCeEEEecCCCCCCCCCCC--ccceeeeccCCCCCeeEEEEeecCCccEEEEecCC
Q 017553 236 ASVHSNYVDCNRWLGDFILSK-SVDNEIVLWEPKMKEQSPGEG--TADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE 312 (369)
Q Consensus 236 ~~~~~~~v~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~d 312 (369)
.......|..+.-.....+.. ..++.|..|-.....+..... ..............|..++.... ..+.-..+
T Consensus 237 ~~~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G~~----ht~alt~~ 312 (423)
T 3mvd_K 237 IITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGGQH----HTVILTTD 312 (423)
T ss_dssp CCTTCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEECSS----EEEEEETT
T ss_pred eecCCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEcccC----eEEEEeCC
Confidence 222233455554443333333 689999999766543221100 00001111111234444433222 44455678
Q ss_pred CeEEEEEccCC--------Cc-e-eEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecC
Q 017553 313 GKIFVWELQSS--------PP-V-LIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 313 g~i~i~d~~~~--------~~-~-~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 367 (369)
|.|+.|=.... .. . ....+. .-...|..++..... .++ -..||.|+.|-..
T Consensus 313 G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~--~l~~~v~~ia~G~~h-s~a-lt~~G~v~~wG~n 373 (423)
T 3mvd_K 313 LKCSVVGRPEYGRLGLGDVKDVVEKPTIVK--KLTEKIVSVGCGEVC-SYA-VTIDGKLYSWGSG 373 (423)
T ss_dssp CCEEEEECCGGGTTCSSSCCSCEEEEEECT--TCCSCEEEEEEETTE-EEE-EETTSCEEEEECC
T ss_pred CcEEEEECCCCCCCCCCCccccccCceEec--cCCCCEEEEEcCCCe-EEE-EcCCCCEEEECCC
Confidence 99999975321 00 1 111121 222267777766442 233 3678999999643
No 370
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=68.46 E-value=21 Score=31.66 Aligned_cols=61 Identities=7% Similarity=0.058 Sum_probs=41.4
Q ss_pred ccEEEEecCCCeEEEEEccCCC----ceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEE
Q 017553 303 YNAAAIGNREGKIFVWELQSSP----PVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWR 363 (369)
Q Consensus 303 ~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~v 363 (369)
+.++..|+.+|.|.-.-+.... ...+..+.......+|..|.++++...|..++.++.++|
T Consensus 380 ytVlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qV 444 (590)
T 3nvq_A 380 FHVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQV 444 (590)
T ss_dssp EEEEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEEEE
T ss_pred eEEEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEEEc
Confidence 4577889999998754443221 223333432234568999999999999999988877665
No 371
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=64.17 E-value=53 Score=26.15 Aligned_cols=86 Identities=9% Similarity=-0.032 Sum_probs=43.9
Q ss_pred CeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEe----CCCcEEEEEccCCcEEEEeeccCCCCCcEEEEEec
Q 017553 108 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS----KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFH 183 (369)
Q Consensus 108 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~----~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 183 (369)
..|+..++...+. ..+.. .. ...|++ +++.|+-.. .+..|...++.... ...+. .+.. ..++
T Consensus 88 ~~Iy~i~~dg~~~-~~l~~--~~--~~~~s~-~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt---~~~~----~~~~ 153 (302)
T 3s25_A 88 NSLCRIKRNGHGS-TVLDP--DP--CIYASL-IGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIK---NHYL----FTCN 153 (302)
T ss_dssp EEEEEEETTSCCC-EEEEC--SC--EEEEEE-ETTEEEEEEESSSSCEEEEEEETTSCC-CEEEE---SSCC----CCSE
T ss_pred CeEEEEeCCCCcc-eEeec--CC--ccEEEE-eCCEEEEEeecCCCCceEEEEECCCCC-eEEEe---CCCc----eEee
Confidence 4677778765542 22322 11 225666 556666554 33455555655333 33343 2322 3456
Q ss_pred CCCceEEEEEeeCCcEEEEEccCc
Q 017553 184 PSDIYRIASCGMDNTVKIWSMKEF 207 (369)
Q Consensus 184 ~~~~~~l~~~~~d~~v~i~d~~~~ 207 (369)
|.+..++.+......|...++...
T Consensus 154 ~~g~~iy~t~~g~~~Iy~~~l~g~ 177 (302)
T 3s25_A 154 TSDRYFYYNNPKNGQLYRYDTASQ 177 (302)
T ss_dssp EETTEEEEECTTTCCEEEEETTTT
T ss_pred EECCEEEEEeCCCceEEEEECCCC
Confidence 634554445443567877777663
No 372
>3oky_B Putative uncharacterized protein; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okw_A* 3afc_A* 3al8_A*
Probab=63.46 E-value=76 Score=28.00 Aligned_cols=72 Identities=8% Similarity=0.093 Sum_probs=47.4
Q ss_pred eeEEEEee----cCCccEEEEecCCCeEEEEEccC------CCceeEEEeecCC---------CccceEEEEecCCCCEE
Q 017553 292 IWFIKFSC----DFHYNAAAIGNREGKIFVWELQS------SPPVLIARLSHAQ---------SKSPIRQTAMSYDGSTI 352 (369)
Q Consensus 292 i~~~~~s~----~~~~~~l~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~---------~~~~v~~~~~s~~~~~l 352 (369)
.+.|+... ++.+.++..|+.+|.|.-.-+.. .+...+.++.... ...+|..|.++++...|
T Consensus 405 lT~IaVd~~~g~~~~ytVlFLGTd~G~l~Kvv~~~~~~~~~~~~~~iEEi~vf~~~~~~~~~~~~~pI~~L~ls~~~~~L 484 (565)
T 3oky_B 405 LTKIAVDNAAGPYQNHTVVFLGSEKGIILKFLARIGSSGFLNGSLFLEEMNVYNPEKCSYDGVEDKRIMGMQLDRASGSL 484 (565)
T ss_dssp EEEEEEEEEETTTTCEEEEEEEETTSEEEEEEECC-----CCCCEEEEEEECCCHHHHCBTTBCCCCCCEEEEEGGGTEE
T ss_pred eEEEEEEEEecCCCceEEEEEECCCCeEEEEEecCCCCccccccEEEEEEEEeccccccccccCCCceEEEEEcCCCCEE
Confidence 46777765 34467888999999985333221 1123333333111 13578899999999999
Q ss_pred EEeecCCeEEE
Q 017553 353 LSCCEDGAIWR 363 (369)
Q Consensus 353 ~s~~~dg~i~v 363 (369)
.+++.++.++|
T Consensus 485 YV~s~~~V~qV 495 (565)
T 3oky_B 485 YVAFSTCVIKV 495 (565)
T ss_dssp EEECSSCEEEE
T ss_pred EEEecCeEEEe
Confidence 99998887776
No 373
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=61.59 E-value=17 Score=33.06 Aligned_cols=36 Identities=8% Similarity=0.206 Sum_probs=29.7
Q ss_pred ceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEee
Q 017553 130 SINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFA 168 (369)
Q Consensus 130 ~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 168 (369)
.|.++.+ +..++++-+.|.++|+|++.+++++....
T Consensus 223 ~Is~~~~---~~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 223 VISCKLF---HERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp EEEEEEE---TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEecc---CCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 4665555 35799999999999999999999887765
No 374
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=60.79 E-value=59 Score=25.52 Aligned_cols=196 Identities=12% Similarity=-0.019 Sum_probs=100.0
Q ss_pred EEEEeecCCeEEEEE---cCCccccceeeccccceEEEEecCC-CCceEEEEeCCCcEEEEEccCCc------EEEEeec
Q 017553 100 FLVAGGINGIIRVID---VSNEKLHKSFVGHGDSINEIRTQPL-KPSLVVSASKDESVRLWNVQTGI------CILIFAG 169 (369)
Q Consensus 100 ~l~~~~~dg~i~vwd---~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~------~~~~~~~ 169 (369)
.|+.-+..|.++--. +........+. ....|..+.. +. +...++..+.+|.++-..+..-. ....++
T Consensus 37 ~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lk- 113 (276)
T 3no0_A 37 GLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLT- 113 (276)
T ss_dssp CEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCC-
T ss_pred EEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecC-
Confidence 455566677665433 22221111133 3445555533 31 35688999999999999876532 111122
Q ss_pred cCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccCCCceeeee-e
Q 017553 170 AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNR-W 248 (369)
Q Consensus 170 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~ 248 (369)
..+.+..+.... +...++..+..|.+..+....-...... ....+...+.. ...|..+. .
T Consensus 114 ---egD~l~~~~~~~-~~~~ill~T~~G~~~r~~~~eip~~gR~--------------a~Gv~~i~L~~-~d~vv~~~~~ 174 (276)
T 3no0_A 114 ---EGDEVVSIASSV-DETHILLFTKKGRVARFSVREVPPSTPG--------------ARGVQGIKLEK-NDETSGLRIW 174 (276)
T ss_dssp ---TTCCEEEEEECC-SSCEEEEEETTSEEEEEEGGGSCBCCTT--------------CCCEECCCCCT-TCCEEEEEEE
T ss_pred ---CCCEEEEEEEeC-CCCEEEEEECCCEEEEEEhhhCCCcCCC--------------CCCEEEEccCC-CCEEEEEEEe
Confidence 345566655554 5556777888899888877652110000 00111112222 23333333 2
Q ss_pred e-CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEE--EEccC
Q 017553 249 L-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFV--WELQS 322 (369)
Q Consensus 249 ~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i--~d~~~ 322 (369)
. +..++..+..|.++...+........... -+..+ .....+..+....+. ..++..+.+|.+.. ++...
T Consensus 175 ~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gk--Gv~~i-~~~~~lv~~~~~~~~--~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 175 NGEPYLLVITAKGRVKKISHEEIPKTNRGVK--GTEVS-GTKDTLVDLIPIKEE--VELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp SSCSEEEEEETTSCEEEEEGGGSCCCCTTCC--CEECC-CSSSCEEEEEEESSE--EEEEEEETTSCEEEEEEEGGG
T ss_pred CCCCEEEEEeCCCcEEEeEHHHcccCCCCCc--ceEEE-cCCCcEEEEEEeCCC--CEEEEEcCCCeEEEeeeCHHH
Confidence 2 55788889999988887755432211110 11111 122344444333222 25666677788877 87654
No 375
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=58.78 E-value=77 Score=26.25 Aligned_cols=213 Identities=9% Similarity=0.075 Sum_probs=105.3
Q ss_pred eeEEEeeecCCCccEEEEeecCCeEEEEEcCCccc-----------cceeec-cccceEEEEecCCCCceEEEEeCCCcE
Q 017553 86 FYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL-----------HKSFVG-HGDSINEIRTQPLKPSLVVSASKDESV 153 (369)
Q Consensus 86 v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~-----------~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~i 153 (369)
+..++++ .-.. ..++-..||.|+.|-....-. ...+.. ....|..|+.- ....+.-..||.|
T Consensus 107 ~~~v~i~--~G~~-h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G---~~hs~alt~~G~v 180 (389)
T 3kci_A 107 IKKVAVN--SGGK-HCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG---GAHSACVTAAGDL 180 (389)
T ss_dssp EEEEEEC--TTCS-EEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC---SSEEEEEETTSCE
T ss_pred eeEEEEC--cCCC-eEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC---cCeEEEEeCCCeE
Confidence 3334444 3333 566667899999997543111 011111 11246666653 3455666788999
Q ss_pred EEEEccCC-c----------EEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCC
Q 017553 154 RLWNVQTG-I----------CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPS 222 (369)
Q Consensus 154 ~vwd~~~~-~----------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~ 222 (369)
+.|-.... + ....+.. .....|..++... +..+.+.-..||.|..|-.......-..
T Consensus 181 ~~wG~n~~GqLG~~~~~~~~~p~~v~~--~~~~~v~~ia~G~-g~~~t~~l~~~G~v~~wG~n~~GqLG~g--------- 248 (389)
T 3kci_A 181 YTWGKGRYGRLGHSDSEDQLKPKLVEA--LQGHRVVDIACGS-GDAQTLCLTDDDTVWSWGDGDYGKLGRG--------- 248 (389)
T ss_dssp EEEECCGGGTTCSSSCCCEEEEEECGG--GTTSCEEEEEECC-SSCEEEEEETTTEEEEEECCGGGTTSSS---------
T ss_pred EEeCCCCCCCcCCCCCcccccceEecc--cCCCeEEEEEEcC-CCcEEEEEccCCEEEEEeCCCCCCCCCC---------
Confidence 99975321 1 1111111 1234577777643 3355666678999999976542111000
Q ss_pred CCCCceeecceeeeccCCCceeeeeeeCcEEEEeecCCeEEEecCCCCCCCCCCCc--cceeeecc-CCCCCeeEEEEee
Q 017553 223 KFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGT--ADILQKYP-VPECDIWFIKFSC 299 (369)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~~~-~~~~~i~~~~~s~ 299 (369)
.......|..........|..++....+.+.-..+|.|..|-.....+...... ........ .....|..++..
T Consensus 249 --~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G- 325 (389)
T 3kci_A 249 --GSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATG- 325 (389)
T ss_dssp --SCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC-
T ss_pred --CCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEec-
Confidence 000011122211122234555655566666678899999997654332111000 00111111 112334444432
Q ss_pred cCCccEEEEecCCCeEEEEEccC
Q 017553 300 DFHYNAAAIGNREGKIFVWELQS 322 (369)
Q Consensus 300 ~~~~~~l~~~~~dg~i~i~d~~~ 322 (369)
.. ..++-..||.|+.|=...
T Consensus 326 -~~--h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 326 -SL--HCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp -SS--EEEEEETTCCEEEEECCT
T ss_pred -cC--eEEEECCCCCEEEeeCCC
Confidence 22 444457889999997654
No 376
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=58.51 E-value=78 Score=26.18 Aligned_cols=161 Identities=7% Similarity=-0.039 Sum_probs=85.8
Q ss_pred ecCCCCceEEEEeCCCcEEEEEccC---------CcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccC
Q 017553 136 TQPLKPSLVVSASKDESVRLWNVQT---------GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206 (369)
Q Consensus 136 ~~~~~~~~l~s~~~dg~i~vwd~~~---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~ 206 (369)
+-| +..++++.+.+|.|+--.+.. +..-..++ ..+.+..+.... ....++..+..|.++-+....
T Consensus 3 lI~-~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk----e~D~l~~~~~~~-t~d~ll~fT~~G~~~~~~~~e 76 (370)
T 3l6v_A 3 LIA-PEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK----EEDFIDQLWLVN-THDTLLTFTSSGKVFWLPVHQ 76 (370)
T ss_dssp CCC-CCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS----CCCCEEEEEEEC-TTCEEEEEETTSEEEEEEGGG
T ss_pred ccc-CCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC----CCCEEEEEEEec-CCCEEEEEeCCCeEEEEEHHH
Confidence 446 677999999999999876542 12222333 455666655554 455566667778776665443
Q ss_pred ceeeeeeeeeccCCCCCCCCceeecce---eeeccCCCceeee-ee---e-CcEEEEeecCCeEEEecCCCCCCCCCCCc
Q 017553 207 FWTYVEKSFTWTDLPSKFPTKYVQFPV---FIASVHSNYVDCN-RW---L-GDFILSKSVDNEIVLWEPKMKEQSPGEGT 278 (369)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~-~~---~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 278 (369)
-..... .....++ ..+.. ...|.++ .. . +.+++.++..|.++...+.........+.
T Consensus 77 ip~~~r--------------~a~G~~i~~ll~L~~-~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~ 141 (370)
T 3l6v_A 77 LPEAGS--------------NARGRPIINWIPLES-GERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGK 141 (370)
T ss_dssp SCBCCT--------------TSCCEEGGGSCCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCE
T ss_pred CcCCCc--------------ccCCcCHhhccCCCC-CCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCce
Confidence 100000 0001111 11121 2233333 22 2 45899999999999887765443211111
Q ss_pred cceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEEEEccC
Q 017553 279 ADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS 322 (369)
Q Consensus 279 ~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~ 322 (369)
....+.. ...+..+....... .++..+.+|.+..++...
T Consensus 142 --~ai~L~~-~d~lv~v~~~~~~~--~i~l~T~~G~~irf~~~~ 180 (370)
T 3l6v_A 142 --IAINLDE-GDALVGVALTDGDR--DVLLFASNGKTVRFGEST 180 (370)
T ss_dssp --ESSCCCT-TCCEEEEEEECSCC--EEEEEETTSEEEEEEGGG
T ss_pred --EEEEeCC-CCEEEEEEEeCCCc--eEEEEeCCCeEEEEEccc
Confidence 1122222 33444554444333 577778889888888653
No 377
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=55.99 E-value=1.3e+02 Score=27.98 Aligned_cols=113 Identities=11% Similarity=-0.015 Sum_probs=59.3
Q ss_pred ccceeEEEeeecCCCccEEEEeecCCeEEEEEcCCccccceeec-------cccceEEEEecCCCCceEEEEeCCCc---
Q 017553 83 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG-------HGDSINEIRTQPLKPSLVVSASKDES--- 152 (369)
Q Consensus 83 ~~~v~~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~s~~~dg~--- 152 (369)
...|..+++. |.....++++...+.|...+ +.++.-..+.. ....|.+|++.|.+...++.+..+..
T Consensus 14 ~g~i~~i~~~--p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~ 90 (789)
T 1sqj_A 14 GGYITGIVAH--PKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDE 90 (789)
T ss_dssp CSCEEEEEEC--SSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSS
T ss_pred CCcEEEEEEC--CCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCc
Confidence 4577778887 54333577777777666554 33432222221 12469999999855555555543211
Q ss_pred -EEEEEc-cCCcEEEEeeccCCC----C--CcEEEEEecCCCceEEEEEeeCCc
Q 017553 153 -VRLWNV-QTGICILIFAGAGGH----R--NEVLSVDFHPSDIYRIASCGMDNT 198 (369)
Q Consensus 153 -i~vwd~-~~~~~~~~~~~~~~~----~--~~v~~~~~~~~~~~~l~~~~~d~~ 198 (369)
-.||.- ..|+.-..+...... . ..+..++++|.+...++.+...+.
T Consensus 91 ~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~g 144 (789)
T 1sqj_A 91 WAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEG 144 (789)
T ss_dssp CCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSC
T ss_pred ccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCC
Confidence 334433 334443333211000 1 135568888855666776664443
No 378
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=54.77 E-value=1.3e+02 Score=27.60 Aligned_cols=103 Identities=12% Similarity=0.057 Sum_probs=50.4
Q ss_pred cCCeEEEecCCCCCCCC-CCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCe--EEEEEccCCCceeEEE-eec
Q 017553 258 VDNEIVLWEPKMKEQSP-GEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGK--IFVWELQSSPPVLIAR-LSH 333 (369)
Q Consensus 258 ~d~~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~-~~~ 333 (369)
..+.|...++.+....+ .......+. .+.....+..+.+..+. ++++...++. +.++|+.+++. .... +..
T Consensus 318 ~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~---l~~~~~~~~~~~l~~~~~~~g~~-~~~~~i~l 392 (711)
T 4hvt_A 318 KAGSLVALHFTDLLKTESDKTSLKILF-TPTANEVFNFISTTKDR---VFLATYDNVVAKVVTFTLENEQW-TKPVVLKL 392 (711)
T ss_dssp CTTCEEEEEGGGGGSCGGGCTTCEEEE-CCCTTEEEEEEEECSSC---EEEEEEETTEEEEEEECEETTEE-CCCEEECC
T ss_pred CCCeEEEEECCcccccccccccceEEE-CCCCCCeEEEEEEECCE---EEEEEEECCEEEEEEEECCCCce-EEEeccCC
Confidence 45678888887642100 000111111 11223456677777663 6677666664 67777766521 1112 221
Q ss_pred CCCccceEEEEecCCCC-EEEEee---cCCeEEEEec
Q 017553 334 AQSKSPIRQTAMSYDGS-TILSCC---EDGAIWRWDA 366 (369)
Q Consensus 334 ~~~~~~v~~~~~s~~~~-~l~s~~---~dg~i~vw~~ 366 (369)
.. .+.+.....++++. ++++.+ .-+.++.+|+
T Consensus 393 p~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~ 428 (711)
T 4hvt_A 393 PY-QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVK 428 (711)
T ss_dssp CS-TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred CC-CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeC
Confidence 11 24566666777765 444333 2345666654
No 379
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=51.10 E-value=93 Score=24.84 Aligned_cols=244 Identities=11% Similarity=0.013 Sum_probs=115.4
Q ss_pred EEEEeecCCeEEEEEcCCcccc---------ceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEcc---C------C
Q 017553 100 FLVAGGINGIIRVIDVSNEKLH---------KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ---T------G 161 (369)
Q Consensus 100 ~l~~~~~dg~i~vwd~~~~~~~---------~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~---~------~ 161 (369)
++++.+.+|.|+--.+.+-+.. ..++.. +.+..+.... ....|+..+..|.++-.... . |
T Consensus 5 ~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~-~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G 82 (307)
T 1zi0_A 5 VVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVAN-THDHILCFSSRGRVYSMKVYQLPEATRGARG 82 (307)
T ss_dssp EEEEEETTSEEEEEECC---------------------CCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSCCCCSSSCC
T ss_pred EEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEEC-CCCEEEEEECCCEEEEEEhhHCcCCCCCCCC
Confidence 7888899999987766442211 112323 2333333333 34556666777876665542 1 2
Q ss_pred cEEEEeeccCCCCCcEEEEEecC--CCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccC
Q 017553 162 ICILIFAGAGGHRNEVLSVDFHP--SDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH 239 (369)
Q Consensus 162 ~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (369)
.++..+-.+ .....|.++...+ .+..+++..+.+|.++-..+......... ......+..+
T Consensus 83 ~~i~~~l~l-~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~----------------G~~~i~l~~~ 145 (307)
T 1zi0_A 83 RPIVNLLPL-EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTA----------------GKVAIKLVDG 145 (307)
T ss_dssp EEGGGTSCC-CTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTT----------------CEESSCCCTT
T ss_pred eEhhhccCC-CCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccC----------------CeEEEEECCC
Confidence 221111111 2344565554321 14556888899999999887652111000 0011112222
Q ss_pred CCceeeeee-e-CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEE
Q 017553 240 SNYVDCNRW-L-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFV 317 (369)
Q Consensus 240 ~~~v~~~~~-~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i 317 (369)
+.+..+.. + .+.++..+.+|.+..++...-..............+. ....+.++....++. .+++.+..|.++-
T Consensus 146 -d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~--~ll~~T~~G~~Kr 221 (307)
T 1zi0_A 146 -DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDG--AILTATQNGYGKR 221 (307)
T ss_dssp -CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSC--EEEEEETTSEEEE
T ss_pred -CEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCC--EEEEEEcCCceEE
Confidence 33333322 2 4567777888988877765432211111111111222 224455554433333 6777888999998
Q ss_pred EEccCCCc-----eeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEec
Q 017553 318 WELQSSPP-----VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 366 (369)
Q Consensus 318 ~d~~~~~~-----~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~ 366 (369)
.++..... .-...+......+.+..+....+..-|+..+.+|.+.-.++
T Consensus 222 ~~~~e~~~~~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~ 275 (307)
T 1zi0_A 222 TAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRV 275 (307)
T ss_dssp ECGGGSCCCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEG
T ss_pred EEHHHhccCCCCCCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEec
Confidence 88754221 11111111122245555444333344555556666555443
No 380
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=50.11 E-value=78 Score=28.21 Aligned_cols=58 Identities=17% Similarity=0.155 Sum_probs=38.6
Q ss_pred eEEEEecCCCCceEEEEeCC------------CcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEE
Q 017553 131 INEIRTQPLKPSLVVSASKD------------ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIAS 192 (369)
Q Consensus 131 v~~~~~~~~~~~~l~s~~~d------------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 192 (369)
.--|+|+| .+.+++.-..+ ..+.+.+..+++..+.+.. ....+++.++|+| +++.|+.
T Consensus 478 PDNL~fd~-~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~--P~gaE~TG~~fsp-Dg~tlfv 547 (592)
T 3zwu_A 478 PDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG--PIGCEVTGISFSP-DQKTLFV 547 (592)
T ss_dssp EEEEEECT-TCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEEC--CTTCEEEEEEECT-TSSEEEE
T ss_pred CcceEECC-CCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeC--CCCccCcCeeECC-CCCEEEE
Confidence 46789999 77766654322 2456667777777666663 2456899999999 6554444
No 381
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=45.12 E-value=1.5e+02 Score=26.35 Aligned_cols=61 Identities=16% Similarity=0.147 Sum_probs=39.4
Q ss_pred cceEEEEecCCCCceEEEEeC------------CCcEEEEEccCCcEEEEeeccCCCCCcEEEEEecCCCceEEEEE
Q 017553 129 DSINEIRTQPLKPSLVVSASK------------DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASC 193 (369)
Q Consensus 129 ~~v~~~~~~~~~~~~l~s~~~------------dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 193 (369)
.....|.|.+ ++.+.+.... ...|..++..+++....+.. .....++.++|+| +++.|+++
T Consensus 476 nsPDnL~fd~-~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~--P~~aEpnGiafSP-D~ktLfV~ 548 (592)
T 4a9v_A 476 NSPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG--PIGCEVTGISFSP-DQKTLFVG 548 (592)
T ss_dssp CCEEEEEECT-TCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEEC--CTTCEEEEEEECT-TSSEEEEE
T ss_pred CCCCceEECC-CCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeC--CCCccccCCEECC-CCCEEEEE
Confidence 3466899999 7776663321 12567777777876665542 1345789999999 66555554
No 382
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=43.34 E-value=1.4e+02 Score=24.76 Aligned_cols=168 Identities=12% Similarity=0.072 Sum_probs=0.0
Q ss_pred CeEEEEEeeccCCCccEEEEecC-------------Cc---EEEEEecCC--ceeEEEee-eccCCcccceeEEEee-ec
Q 017553 35 PLYAVVFNFIDSRYFNVFATVGG-------------NR---VTVYQCLEG--GVIAALQS-YVDEDKEESFYTVSWA-CN 94 (369)
Q Consensus 35 ~v~~~~~s~~~~~~~~~la~~~~-------------~~---v~iw~~~~~--~~~~~~~~-~~~~~~~~~v~~~~~~-~~ 94 (369)
.|..+...+ ++.+.+.=.+ -+ |.+||+.++ +.++.+.- ...-.....+..+.+. ..
T Consensus 88 sV~~v~iD~----~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~ 163 (381)
T 3q6k_A 88 SIYQPVIDD----CRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVAN 163 (381)
T ss_dssp CEEEEEECT----TCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESC
T ss_pred EeeEEEEcC----CCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEeccc
Q ss_pred CC----CccEEEEeecCCeEEEEEcCCccccceeecc------------------ccceEEEEecCC----CCceEEEEe
Q 017553 95 VD----GIPFLVAGGINGIIRVIDVSNEKLHKSFVGH------------------GDSINEIRTQPL----KPSLVVSAS 148 (369)
Q Consensus 95 ~~----g~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------------------~~~v~~~~~~~~----~~~~l~s~~ 148 (369)
++ +....++=...+-|.|+|+.+++..+.+..+ ...|..|+++|. +..+.+..-
T Consensus 164 ~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~pl 243 (381)
T 3q6k_A 164 PKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAG 243 (381)
T ss_dssp TTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEES
T ss_pred CCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEEC
Q ss_pred CCCcEEEEE---ccCCcEEEEeeccCCCC--CcEEEEEecCCCceEEEEEeeCCcEEEEEccC
Q 017553 149 KDESVRLWN---VQTGICILIFAGAGGHR--NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206 (369)
Q Consensus 149 ~dg~i~vwd---~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~ 206 (369)
....+.--. ++.......++...... ..-..+++.+.++.++++--....|..|+..+
T Consensus 244 ss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 244 SAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp SCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred CCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
No 383
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=41.34 E-value=1.3e+02 Score=23.60 Aligned_cols=156 Identities=15% Similarity=0.142 Sum_probs=88.1
Q ss_pred cCeEEEEEeeccCCCccEEEEecCCc---EEEEEecCCceeEEEeeeccCCcccceeEEEeeecC-CCccEEEEeecCCe
Q 017553 34 RPLYAVVFNFIDSRYFNVFATVGGNR---VTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNV-DGIPFLVAGGINGI 109 (369)
Q Consensus 34 ~~v~~~~~s~~~~~~~~~la~~~~~~---v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~g~~~l~~~~~dg~ 109 (369)
+.+..+..... ...+++..+.+. +.+|++..+.... + . ...+.|..+-. .. +.. +++..+.+|.
T Consensus 24 D~~~~~~~~~t---~~~ll~fT~~G~v~~~~~~~lp~~~~~~-l----l-~~~e~i~~v~~--~~~~~~-~~v~~T~~G~ 91 (276)
T 3no0_A 24 APVVNILRVPF---TEGLFLVSNRGRVYWIAGSQALQGSKVS-L----K-SREEKIVGAFI--REKFGN-RLLLATKKGY 91 (276)
T ss_dssp CCEEEEEEEET---TSCEEEEETTSEEEEECSHHHHTSEECC-C----S-STTCCEEEEEE--GGGSCS-EEEEEETTSE
T ss_pred CeEEEEEEECC---CCEEEEEcCCCeEEEEEhhhCccCcccc-c----C-CCCCEEEEEEC--CcCCCC-EEEEEeCCCE
Confidence 44555554442 245666666665 3345554332211 1 1 23455555432 11 344 8999999999
Q ss_pred EEEEEcCCcc------ccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCC-------cEEEEeeccCCCCCc
Q 017553 110 IRVIDVSNEK------LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG-------ICILIFAGAGGHRNE 176 (369)
Q Consensus 110 i~vwd~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-------~~~~~~~~~~~~~~~ 176 (369)
++...+.+-. ....++. .+.+..+.... ....++..+..|.+..+....- +-+..+. + ...+.
T Consensus 92 iKr~~l~~~~~~~~G~~~i~lke-gD~l~~~~~~~-~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~-L-~~~d~ 167 (276)
T 3no0_A 92 VKKIPLAEFEYKAQGMPIIKLTE-GDEVVSIASSV-DETHILLFTKKGRVARFSVREVPPSTPGARGVQGIK-L-EKNDE 167 (276)
T ss_dssp EEEEEGGGTTTCSTTEECSCCCT-TCCEEEEEECC-SSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCC-C-CTTCC
T ss_pred EEEEEHHHhhhhcCCeEEEecCC-CCEEEEEEEeC-CCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEc-c-CCCCE
Confidence 9999876532 1222332 24455555544 4557777888899888876421 1111111 1 13456
Q ss_pred EEEEEecCCCceEEEEEeeCCcEEEEEccC
Q 017553 177 VLSVDFHPSDIYRIASCGMDNTVKIWSMKE 206 (369)
Q Consensus 177 v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~ 206 (369)
|..+...+ ++..++..+..|.++...+..
T Consensus 168 vv~~~~~~-~~~~ll~~T~~G~~kr~~~~e 196 (276)
T 3no0_A 168 TSGLRIWN-GEPYLLVITAKGRVKKISHEE 196 (276)
T ss_dssp EEEEEEES-SCSEEEEEETTSCEEEEEGGG
T ss_pred EEEEEEeC-CCCEEEEEeCCCcEEEeEHHH
Confidence 66665554 455788888899999888766
No 384
>4fww_A Macrophage-stimulating protein receptor; beta-propeller, cysteine-knot, receptor tyrosine kinase, MAC stimulating protein, N-glycosylation; HET: NAG BMA; 1.85A {Homo sapiens}
Probab=40.03 E-value=1.3e+02 Score=26.35 Aligned_cols=73 Identities=19% Similarity=0.222 Sum_probs=45.4
Q ss_pred CCeeEEEEeecCCccEEEEecCCCeEEEEEccCCC-c-eeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEE
Q 017553 290 CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP-P-VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWR 363 (369)
Q Consensus 290 ~~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~-~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~v 363 (369)
..+++++..+.+.+.++..|+.+|+|.-.-+.... . ..+..+.......+|. ..++.+++.|..++.++.++|
T Consensus 405 ~~~T~iav~~~~~~tV~FlGT~~G~l~Kv~~~~~~~~~~~~~~~~~~~~~~pi~-~~l~~~~~~Lyv~s~~~V~~v 479 (527)
T 4fww_A 405 VQVTALYVTRLDNVTVAHMGTMDGRILQVELVRSLNYLLYVSNFSLGDSGQPVQ-RDVSRLGDHLLFASGDQVFQV 479 (527)
T ss_dssp CCEEEEEEEEETTEEEEEEEETTSEEEEEECSCCSSCCCEEEEEEETTSCCCBC-SCCEEETTEEEEEETTEEEEE
T ss_pred eEEEEEEEeccCCEEEEEEECCCCeEEEEEEcCCCCcceEEEEEEecCCCceee-hhcccCCCEEEEEECCEEEEE
Confidence 34788888888777889999999998766544321 1 2223333223334553 234445668888888876655
No 385
>3nvn_B Plexin-C1; beta-propeller, signaling, viral protein-signaling protein C; HET: NDG NAG; 2.26A {Homo sapiens} PDB: 3nvq_B*
Probab=39.79 E-value=1.6e+02 Score=25.21 Aligned_cols=71 Identities=10% Similarity=0.074 Sum_probs=44.6
Q ss_pred CeeEEEEeecCCccEEEEecCCCeEEEEEccCCCc----eeEEEeecCCCccceE-EEEecC-CCCEEEEeecCCeEEEE
Q 017553 291 DIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP----VLIARLSHAQSKSPIR-QTAMSY-DGSTILSCCEDGAIWRW 364 (369)
Q Consensus 291 ~i~~~~~s~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~~~~v~-~~~~s~-~~~~l~s~~~dg~i~vw 364 (369)
.+++++...-..+.++..|+.+|.|+---+..... .....+ ....+|. .+.++| ++..|..++..+.++|.
T Consensus 341 ~LTsVav~vv~~~TVlFLGTd~G~L~KVvv~~~~~~~~~~~~~ei---~ee~~V~~~L~ldp~~~~~LyV~s~~~V~qVP 417 (476)
T 3nvn_B 341 DLTSVYGTVVMNRTVLFLGTGDGQLLKVILGENLTSNCPEVIYEI---KEETPVFYKLVPDPVKNIYIYLTAGKEVRRIR 417 (476)
T ss_dssp SEEEEEEEESSSSEEEEEEETTSEEEEEECCTTSCCCCCEEEEEC---TTCCCBCSCCEECSSCTTEEEEEETTEEEEEE
T ss_pred CCceEEEEEeCCeEEEEEECCCceEEEEEecCCCCccceeEEEee---cCCCccccccccCccccceEEEecCcEEEEEE
Confidence 46777777666667888999999987443332211 111222 2234565 678887 57788888888776653
No 386
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=37.96 E-value=1.9e+02 Score=24.73 Aligned_cols=106 Identities=17% Similarity=0.119 Sum_probs=56.0
Q ss_pred EEEeeecCCCccEEEEeecCCeEEEEEcCCcc---ccceee---------ccccceEEEEecCC---CCceEEEEeCC--
Q 017553 88 TVSWACNVDGIPFLVAGGINGIIRVIDVSNEK---LHKSFV---------GHGDSINEIRTQPL---KPSLVVSASKD-- 150 (369)
Q Consensus 88 ~~~~~~~~~g~~~l~~~~~dg~i~vwd~~~~~---~~~~~~---------~~~~~v~~~~~~~~---~~~~l~s~~~d-- 150 (369)
.++|. |+|...|+++...|.|++++..... .+..+. ........|+|+|+ ++.+.++-+.+
T Consensus 18 ~~a~~--pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~~ 95 (463)
T 2wg3_C 18 GALHS--GDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQE 95 (463)
T ss_dssp EEECC--SSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECCC
T ss_pred EEEEC--CCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCCC
Confidence 45655 8884235556678999999753221 111111 11356789999993 23444433321
Q ss_pred ----------CcEEEEEccC----------CcEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCC
Q 017553 151 ----------ESVRLWNVQT----------GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN 197 (369)
Q Consensus 151 ----------g~i~vwd~~~----------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~ 197 (369)
..|.-|.+.. .+.+..+... .....-..|+|.| ++.++++.+..+
T Consensus 96 ~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~-~~~H~g~~l~fgp-DG~LYv~~Gd~~ 160 (463)
T 2wg3_C 96 RWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAEL-HRKHLGGQLLFGP-DGFLYIILGDGM 160 (463)
T ss_dssp SSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEES-SSSSCEEEEEECT-TSCEEEEECCTT
T ss_pred CcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCC-CCcccCCcEeECC-CCcEEEEeCCCC
Confidence 1344455532 1233333211 1223457899999 787777766543
No 387
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=36.94 E-value=1.8e+02 Score=24.04 Aligned_cols=154 Identities=14% Similarity=0.014 Sum_probs=82.1
Q ss_pred CCCccEEEEeecCCeEEEEEcCCccc---------cceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEcc------
Q 017553 95 VDGIPFLVAGGINGIIRVIDVSNEKL---------HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ------ 159 (369)
Q Consensus 95 ~~g~~~l~~~~~dg~i~vwd~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~------ 159 (369)
|+.. ++++.+.+|.|+--.+.+-+. ...++ ..+.+..+.... ....|+..+..|.+.-+...
T Consensus 5 ~~e~-~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~-t~d~ll~fT~~G~~~~~~~~eip~~~ 81 (370)
T 3l6v_A 5 APED-VVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVN-THDTLLTFTSSGKVFWLPVHQLPEAG 81 (370)
T ss_dssp CCCC-EEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEEC-TTCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred cCCC-EEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEec-CCCEEEEEeCCCeEEEEEHHHCcCCC
Confidence 5555 899999999999876543211 11222 234555555444 44556666777877666542
Q ss_pred ---CCcEEEEeeccCCCCCcEEEEEecC--CCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeeccee
Q 017553 160 ---TGICILIFAGAGGHRNEVLSVDFHP--SDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF 234 (369)
Q Consensus 160 ---~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (369)
.|.++..+-.+ .....|.++...+ ....+|+.++..|.++-..+......... .....
T Consensus 82 r~a~G~~i~~ll~L-~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~----------------G~~ai 144 (370)
T 3l6v_A 82 SNARGRPIINWIPL-ESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLAR----------------GKIAI 144 (370)
T ss_dssp TTSCCEEGGGSCCC-CTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTT----------------CEESS
T ss_pred cccCCcCHhhccCC-CCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCC----------------ceEEE
Confidence 12221111111 1344565554332 13567889999999999888763211000 01111
Q ss_pred eeccCCCceeeeee-e-CcEEEEeecCCeEEEecCCC
Q 017553 235 IASVHSNYVDCNRW-L-GDFILSKSVDNEIVLWEPKM 269 (369)
Q Consensus 235 ~~~~~~~~v~~~~~-~-~~~l~~~~~d~~i~i~d~~~ 269 (369)
.+.. .+.+..+.. + .+.++..+.+|.+..++...
T Consensus 145 ~L~~-~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~ 180 (370)
T 3l6v_A 145 NLDE-GDALVGVALTDGDRDVLLFASNGKTVRFGEST 180 (370)
T ss_dssp CCCT-TCCEEEEEEECSCCEEEEEETTSEEEEEEGGG
T ss_pred EeCC-CCEEEEEEEeCCCceEEEEeCCCeEEEEEccc
Confidence 1222 222332222 2 45677778888887777654
No 388
>3v4v_A Integrin alpha-4; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_A*
Probab=30.80 E-value=2.9e+02 Score=24.66 Aligned_cols=119 Identities=9% Similarity=0.164 Sum_probs=59.5
Q ss_pred eeeeCcEEEEeec-----CCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEec----CCCeEE
Q 017553 246 NRWLGDFILSKSV-----DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN----REGKIF 316 (369)
Q Consensus 246 ~~~~~~~l~~~~~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~----~dg~i~ 316 (369)
..++++.++.|.- .|.+.+|+.........................+....|.-|+.. -+++|. ..|.|+
T Consensus 171 a~~~~d~~v~GApG~~~w~G~v~~~~~~~~~~~~~~~~~~~~~~~sy~GySva~gD~ngDG~~-DlvvGAP~~~~~G~V~ 249 (597)
T 3v4v_A 171 SFYTKDLIVMGAPGSSYWTGSLFVYNITTNKYKAFLDKQNQVKFGSYLGYSVGAGHFRSQHTT-EVVGGAPQHEQIGKAY 249 (597)
T ss_dssp EEECSSEEEEEETTHHHHTBEEEEEETTTTBCCBBCCTTCCSCTTCCBTSSEEEECSSCTTSC-EEEEEETTGGGTCEEE
T ss_pred eEecCCceEEccccccccccceEEEEccCceeeecccccccccccCcCccEEEEEEECCCCCe-EEEEecccccCCceEE
Confidence 4445566666644 478999987654321100000000000001123333345555553 455552 458999
Q ss_pred EEEccCCCceeEEEeecCC----CccceEEEEecCCCC-EEEEee-------cCCeEEEEe
Q 017553 317 VWELQSSPPVLIARLSHAQ----SKSPIRQTAMSYDGS-TILSCC-------EDGAIWRWD 365 (369)
Q Consensus 317 i~d~~~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~-~l~s~~-------~dg~i~vw~ 365 (369)
+|....+.......+.... ....+....++-||. -|++|. ..|.|+||-
T Consensus 250 v~~~~~~~~~~~~~l~G~~~g~~fG~sva~~D~ngDG~~DlvVGap~~~~~~~~G~v~vy~ 310 (597)
T 3v4v_A 250 IFSIDEKELNILHEMKGKKLGSYFGASVCAVDLNADGFSDLLVGAPMQSTIREEGRVFVYI 310 (597)
T ss_dssp EEEECSSSEEEEEEEECSSTTCCTTSEEEEECTTCSSSCEEEEEETTCCSSSCCCEEEEEE
T ss_pred EEecCCCceeEEEEecccccCCCCcceEEEEeeCCCCCceEEEEcccccCCCcCCeEEEEE
Confidence 9987765444444444111 123455566777774 355553 458888874
No 389
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=29.82 E-value=3.4e+02 Score=25.09 Aligned_cols=162 Identities=8% Similarity=0.021 Sum_probs=75.8
Q ss_pred cCCcCeEEEEEeeccCCCccEEEEecCCcEEEEEecCCceeEEEeeec-----cCC--cccceeEEEeeecCCCccEEEE
Q 017553 31 EGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYV-----DED--KEESFYTVSWACNVDGIPFLVA 103 (369)
Q Consensus 31 ~h~~~v~~~~~s~~~~~~~~~la~~~~~~v~iw~~~~~~~~~~~~~~~-----~~~--~~~~v~~~~~~~~~~g~~~l~~ 103 (369)
+-.+.|.+|+++|.++ ..+++.+..++|...+ ..|+....+.... ... ....+..+++.+...+. +++.
T Consensus 18 g~~g~i~~i~~~p~~~--~~~y~~~~~ggv~~S~-DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~-~~~~ 93 (763)
T 3a0f_A 18 SGGGFISGLVAHPTEK--DLIYARTDIGGTYRWN-AAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDR-LYLA 93 (763)
T ss_dssp CBCSCEEEEEECSSST--TCEEEEESSSCEEEEE-TTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTC-EEEE
T ss_pred cCCCceeEEEeCCCCC--CEEEEEeccCcEEEEC-CCCCCeeECccCccccccCCCcccccceeEEEECCCCCCE-EEEE
Confidence 4567899999999642 3344444344454443 4454444433211 000 22457777777322233 3333
Q ss_pred eec----CCeEEEEEc-CCccccceeec------c-ccc--eEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEEeec
Q 017553 104 GGI----NGIIRVIDV-SNEKLHKSFVG------H-GDS--INEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAG 169 (369)
Q Consensus 104 ~~~----dg~i~vwd~-~~~~~~~~~~~------~-~~~--v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 169 (369)
.+. .....||.- +.++.-..+.. . .+. ...++++|.+...++.+..++.|. .....|+.-..+..
T Consensus 94 ~g~~~~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~l~-~S~DgG~TW~~~~~ 172 (763)
T 3a0f_A 94 QGDYVQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQGLW-RSTDRAQTWSRMNQ 172 (763)
T ss_dssp ECSCTTTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSSCEE-EESSTTSSCEECTT
T ss_pred ecccccCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCCCcEE-EECCCCcCcccccc
Confidence 321 011334433 33332222211 0 111 146888886666676666554333 22223333332221
Q ss_pred cCC---CCCcEEEEEecCCCceEEEEEeeCC
Q 017553 170 AGG---HRNEVLSVDFHPSDIYRIASCGMDN 197 (369)
Q Consensus 170 ~~~---~~~~v~~~~~~~~~~~~l~~~~~d~ 197 (369)
... ....+..+.++|.+...++.+..++
T Consensus 173 ~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~ 203 (763)
T 3a0f_A 173 LPDSSTYGIGIISVIFDPKNVGTAYVASHAV 203 (763)
T ss_dssp SCCCSCTTTCEEEEEECSSSTTCEEEEESST
T ss_pred CcccCCCccceEEEEECCCCCCEEEEEEeCC
Confidence 111 1234778899885555555555554
No 390
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=27.50 E-value=2.4e+02 Score=25.56 Aligned_cols=58 Identities=5% Similarity=-0.026 Sum_probs=35.4
Q ss_pred ceEEEEeCCCcEEEE-EccCCcE-EEEeeccCCCCCcEEEEEecCCCc--eEEEEEeeCCcEEE
Q 017553 142 SLVVSASKDESVRLW-NVQTGIC-ILIFAGAGGHRNEVLSVDFHPSDI--YRIASCGMDNTVKI 201 (369)
Q Consensus 142 ~~l~s~~~dg~i~vw-d~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~~d~~v~i 201 (369)
..++.|..+|.|.=. ....+.. +..+... ....+|..|.+++ .. ..|+.++.++.+++
T Consensus 416 tV~flGT~~G~l~Kvv~~~~~~~~~ee~~~~-~~~~pI~~l~l~~-~~~~~~Lyv~s~~~V~~v 477 (663)
T 1olz_A 416 DVMFVSTDRGALHKAISLEHAVHIIEETQLF-QDFEPVQTLLLSS-KKGNRFVYAGSNSGVVQA 477 (663)
T ss_dssp EEEEEEETTSEEEEEEECSSSEEEEEEEECC-TTCCCCCEEEECC-SSSSCEEEEECSSCEEEE
T ss_pred EEEEEEcCCcEEEEEEecCCCceEEEEeccc-CCCCcceeeEecc-CCCccEEEEEEcCeEEEE
Confidence 478888999987433 4333322 2222221 3456888999997 55 77887776665544
No 391
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=26.11 E-value=4.7e+02 Score=25.61 Aligned_cols=22 Identities=9% Similarity=0.191 Sum_probs=19.9
Q ss_pred CcEEEEeecCCeEEEecCCCCC
Q 017553 250 GDFILSKSVDNEIVLWEPKMKE 271 (369)
Q Consensus 250 ~~~l~~~~~d~~i~i~d~~~~~ 271 (369)
..++++-+.|+++|+|++.++.
T Consensus 249 ~~~lftL~~D~~LRiWsl~t~~ 270 (1139)
T 4fhn_B 249 YNVLVMLSLDYKLKVLDLSTNQ 270 (1139)
T ss_dssp TTEEEEEBTTCEEEEEETTTTE
T ss_pred ccEEEEEeCCCEEEEEECCCCC
Confidence 5689999999999999999886
No 392
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=25.79 E-value=2.6e+02 Score=22.47 Aligned_cols=250 Identities=8% Similarity=-0.046 Sum_probs=120.8
Q ss_pred CCCccEEEEeecCCeEEEEEcCCcc----ccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccC---------C
Q 017553 95 VDGIPFLVAGGINGIIRVIDVSNEK----LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT---------G 161 (369)
Q Consensus 95 ~~g~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~---------~ 161 (369)
|+.. ++++.+.+|.|+--.+.+-+ ....++... .+..+.... ....|+..+..|.+.-..... |
T Consensus 3 ~~e~-~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~D-~l~~~~~~~-t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G 79 (323)
T 1wp5_A 3 ASED-VIVTVTKDGYVKRTSLRSYAASNGQDFAMKDTD-RLLAMLEMN-TKDVLLLFTNKGNYLYCPVHELPDIRWKDLG 79 (323)
T ss_dssp SCCE-EEEEEETTCEEEEEEHHHHHHTTTCCCCCCTTC-CEEEEEEEE-TTSEEEEEETTSEEEEEEGGGSCBCCTTSCC
T ss_pred cCCc-EEEEEeCCCEEEEeEHHHhhhcCccccccCCCC-EEEEEEEEC-CCCEEEEEECCCEEEEEEHHHCcCCCCCCCC
Confidence 4455 78899999999987654321 112333333 343333333 445666667778776665421 2
Q ss_pred cEEEEeeccCCCCCcEEEEEecCC--CceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeeeccC
Q 017553 162 ICILIFAGAGGHRNEVLSVDFHPS--DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH 239 (369)
Q Consensus 162 ~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (369)
.++..+-.+ .....|.++...+. ++.+++..+.+|.++-..+........ . .......+...
T Consensus 80 ~~i~~~i~L-~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r-~--------------~G~~ai~l~e~ 143 (323)
T 1wp5_A 80 QHIANIIPI-DRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRY-S--------------KPLTGINLKND 143 (323)
T ss_dssp EEGGGTSCC-CTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCC-S--------------SCEECSCCCTT
T ss_pred cChhhccCC-CCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccc-c--------------CceEEEEeCCC
Confidence 221111111 13345655433331 255688889999999998876321110 0 00011111111
Q ss_pred CCceeeeee-e-CcEEEEeecCCeEEEecCCCCCCCCCCCccceeeeccCCCCCeeEEEEeecCCccEEEEecCCCeEEE
Q 017553 240 SNYVDCNRW-L-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFV 317 (369)
Q Consensus 240 ~~~v~~~~~-~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~l~~~~~dg~i~i 317 (369)
+.+..+.. + .+.++..+.+|.+..+....-..............+. ....|.++..-+++. ..+++.+..|..+.
T Consensus 144 -d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~-~~ll~vt~~G~gKr 220 (323)
T 1wp5_A 144 -DQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKD-ESIVVATQRGAVKK 220 (323)
T ss_dssp -CCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTT-CEEEEEETTSEEEE
T ss_pred -CEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeC-CCCEEEEEEEEcCCC-cEEEEEECCCceEE
Confidence 23333222 2 5577788899998888775432211111111112222 123455554433332 15677788888888
Q ss_pred EEccCCCc-----eeEEEee-cCCCccceEEEEecCCCCEEEEeecCCeEEEEec
Q 017553 318 WELQSSPP-----VLIARLS-HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 366 (369)
Q Consensus 318 ~d~~~~~~-----~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~ 366 (369)
.++..-.. .-+..+. .......+..+....++..++..+.+|.+...++
T Consensus 221 ~~~~e~~~~~Rg~kGv~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~ 275 (323)
T 1wp5_A 221 MKLTEFEKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKV 275 (323)
T ss_dssp EEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEG
T ss_pred EEHHHccccCCCCCCEECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEh
Confidence 88765211 1122221 1011224543333233344555666776655454
No 393
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=25.29 E-value=2e+02 Score=24.90 Aligned_cols=55 Identities=15% Similarity=0.155 Sum_probs=35.4
Q ss_pred EEEEeecCCeEEEEEcC-Ccc-------ccceeec--cccceEEEEecCCCCceEEEEeCCCcEEE
Q 017553 100 FLVAGGINGIIRVIDVS-NEK-------LHKSFVG--HGDSINEIRTQPLKPSLVVSASKDESVRL 155 (369)
Q Consensus 100 ~l~~~~~dg~i~vwd~~-~~~-------~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~dg~i~v 155 (369)
.+..|+.+|.|.-.-+. .+. .+..+.- ...+|..|.+++ +...|+.++.++.++|
T Consensus 423 V~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~-~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 423 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELST-KQQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEET-TTTEEEEEBSSCEEEE
T ss_pred EEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcC-CCCEEEEEECCeEEEE
Confidence 67788889887544332 111 2223322 357899999999 7888888888776554
No 394
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=23.39 E-value=3.1e+02 Score=22.54 Aligned_cols=245 Identities=12% Similarity=0.112 Sum_probs=118.3
Q ss_pred EEEEeecCCeEEEEEcCCcccc-----------ceeec-cccceEEEEecCCCCceEEEEeCCCcEEEEEccCC------
Q 017553 100 FLVAGGINGIIRVIDVSNEKLH-----------KSFVG-HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG------ 161 (369)
Q Consensus 100 ~l~~~~~dg~i~vwd~~~~~~~-----------~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~------ 161 (369)
..+.-..||.|+.|-....-.+ ..+.. ....+..++.+. .....+.-..||.|+.|-....
T Consensus 64 ~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~-G~~h~~al~~~G~v~~wG~n~~GqLG~g 142 (389)
T 3kci_A 64 TLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNS-GGKHCLALSSEGEVYSWGEAEDGKLGHG 142 (389)
T ss_dssp EEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECT-TCSEEEEEETTSCEEEEECCGGGTTCSS
T ss_pred eEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECc-CCCeEEEEcCCCCEEEEeCCCCCcCCCC
Confidence 5666677899999975432110 11111 122345566665 5666777788999999965321
Q ss_pred -----cEEEEeeccCCCCCcEEEEEecCCCceEEEEEeeCCcEEEEEccCceeeeeeeeeccCCCCCCCCceeecceeee
Q 017553 162 -----ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA 236 (369)
Q Consensus 162 -----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (369)
.....+.. -....|..++.. ....+.-..+|.|+.|-.......-. ........|....
T Consensus 143 ~~~~~~~p~~v~~--l~~~~i~~va~G---~~hs~alt~~G~v~~wG~n~~GqLG~-----------~~~~~~~~p~~v~ 206 (389)
T 3kci_A 143 NRSPCDRPRVIES--LRGIEVVDVAAG---GAHSACVTAAGDLYTWGKGRYGRLGH-----------SDSEDQLKPKLVE 206 (389)
T ss_dssp SCCCEEEEEECGG--GTTSCEEEEEEC---SSEEEEEETTSCEEEEECCGGGTTCS-----------SSCCCEEEEEECG
T ss_pred CCccCcCCeEecc--cCCCeEEEEEeC---cCeEEEEeCCCeEEEeCCCCCCCcCC-----------CCCcccccceEec
Confidence 01111211 122357677664 34555566799999997654211000 0000011122111
Q ss_pred ccCCCceeeeeee--CcEEEEeecCCeEEEecCCCCCCCCCCCcc--ceeeecc-CCCCCeeEEEEeecCCccEEEEecC
Q 017553 237 SVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTA--DILQKYP-VPECDIWFIKFSCDFHYNAAAIGNR 311 (369)
Q Consensus 237 ~~~~~~v~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~~~~~-~~~~~i~~~~~s~~~~~~~l~~~~~ 311 (369)
......|..++.. ..+.+.-..||.|..|-.....+....... ....... .....+..++.... ..++-..
T Consensus 207 ~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~----hs~alt~ 282 (389)
T 3kci_A 207 ALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQ----FSVALTK 282 (389)
T ss_dssp GGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETT----EEEEEET
T ss_pred ccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCC----EEEEEeC
Confidence 2223345555443 256666788999999976543321110000 0111111 11223444443332 3444467
Q ss_pred CCeEEEEEccCC--------CceeEEEeecCCCccceEEEEecCCCCEEEEeecCCeEEEEecC
Q 017553 312 EGKIFVWELQSS--------PPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 367 (369)
Q Consensus 312 dg~i~i~d~~~~--------~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~ 367 (369)
+|.|+.|-.... ........-.......|..++.... ..+.-..||.|+.|-.+
T Consensus 283 ~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~--h~~al~~~G~v~~wG~n 344 (389)
T 3kci_A 283 SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSL--HCVCCTEDGEVYTWGDN 344 (389)
T ss_dssp TSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSS--EEEEEETTCCEEEEECC
T ss_pred CCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEeccC--eEEEECCCCCEEEeeCC
Confidence 899999975431 1111111111111234666665433 33444678889998643
No 395
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=21.39 E-value=4.9e+02 Score=24.04 Aligned_cols=125 Identities=10% Similarity=-0.009 Sum_probs=59.8
Q ss_pred CeEEEEEeeccCCCccEEEEecCC---------cEEEEEecCCceeEEEeeeccCCcccceeEEEeeecCCCccEEEEee
Q 017553 35 PLYAVVFNFIDSRYFNVFATVGGN---------RVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGG 105 (369)
Q Consensus 35 ~v~~~~~s~~~~~~~~~la~~~~~---------~v~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~l~~~~ 105 (369)
.+..++|++.+ .+.+++++..+ +..++.-..|.................+..++++ +++...+.+++
T Consensus 488 ~~~~i~~a~~~--~~~~~~vG~~d~~~~~~~~~g~i~~S~DgG~tW~~~~~~~~g~~~~~~~~i~v~--~~~~~~~~~~~ 563 (763)
T 3a0f_A 488 STDGLDFAGRA--ANVLARVGRNDHPDAGVAGCTQGAYTTNSGDSWTLFQTCVPSLEVGNGGTIAVG--ADGKTFVWSPS 563 (763)
T ss_dssp EEEEEEEETTE--EEEEEEEEECSSCCTTCCSCTTEEEESSTTSSCEECSSCCTTCBTTBCCEEEEC--TTSSCEEEECS
T ss_pred cccceEeccCC--CcEEEEEeCCCcccccccCCCcEEEECCCCcCCccCCCCCcccccCCcceEEEe--cCCCcEEEEec
Confidence 36688898743 13567777663 4233333445544443211100012235556666 55544666666
Q ss_pred c--CCeEEEEEcCCccccceeeccccceEEEEecCCCCceEEEEeCCCcEEEEEccCCcEEEE
Q 017553 106 I--NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILI 166 (369)
Q Consensus 106 ~--dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 166 (369)
. ++.|. ...+.++.-..+.+-......+..+|.+.+.++.+ .++.|.+ ....|+.-..
T Consensus 564 ~~~~~~v~-~S~D~G~tW~~~~~l~~~~~~i~~d~~~~~~~y~g-~~g~v~~-S~DgG~tW~~ 623 (763)
T 3a0f_A 564 KADGKGPY-TSSDYGKTWTAPSGLSKQTTGIAADRVQANTFYVY-VEGDFFV-STDGGKSYTK 623 (763)
T ss_dssp SCCSSCCE-EESSTTSCCBCCBSCCCCCSCEEECSSSTTCEEEE-ETTEEEE-ESSTTSBCEE
T ss_pred ccCCCceE-EeCCCCCCCeecCCCCCCcceEEEeccCCCEEEEE-cCCCEEE-EeCCCcCccc
Confidence 3 44332 22333432222222222235677777667777777 4565543 3334444333
Done!