Query 017555
Match_columns 369
No_of_seqs 298 out of 2481
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 16:19:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017555.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017555hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iuq_A Glycerol-3-phosphate ac 99.7 6E-18 2E-22 160.6 4.6 124 181-307 127-283 (367)
2 2lnd_A De novo designed protei 57.3 11 0.00037 27.5 3.6 67 248-337 39-105 (112)
3 4dve_A Biotin transporter BIOY 10.2 2.9E+02 0.01 23.4 4.4 35 59-93 41-76 (198)
4 2ka4_B P113, signal transducer 10.0 1.5E+02 0.0051 19.6 1.9 26 39-67 18-44 (57)
5 4a17_U RPL35, 60S ribosomal pr 8.2 4.2E+02 0.014 20.7 4.2 40 325-368 49-88 (124)
6 3ivz_A Nitrilase; alpha-beta s 7.6 3.7E+02 0.013 23.1 4.3 27 246-274 20-46 (262)
7 3hkx_A Amidase; alpha-beta-BET 7.5 3.7E+02 0.013 23.5 4.3 26 247-274 40-65 (283)
8 2i9o_A MHB8A peptide; beta-hai 7.4 2.2E+02 0.0077 16.5 1.7 17 317-333 20-36 (37)
9 3h16_A TIR protein; bacteria T 7.2 5.8E+02 0.02 20.0 5.0 80 251-331 65-152 (154)
10 3u5e_h 60S ribosomal protein L 7.2 4.3E+02 0.015 20.5 3.8 40 325-368 45-84 (120)
No 1
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1 PDB: 1k30_A
Probab=99.69 E-value=6e-18 Score=160.63 Aligned_cols=124 Identities=21% Similarity=0.272 Sum_probs=84.1
Q ss_pred CCCCCEEEEeCCCCchhHHHHhhcc---------cceehhhhhhhhhcHHHHH--HHhhCCeeEecCCC------Ccccc
Q 017555 181 ESGRPGAIISNHVSYLDILYHMSSS---------FPSFVAKRSVAKLPLVGLI--SKCLGCVYVQRESK------SSDFK 243 (369)
Q Consensus 181 ~~~~~~IivsNH~S~lD~l~l~~~~---------~~~fv~k~~l~~~p~~g~~--~~~~g~i~v~R~~~------~~~~~ 243 (369)
+.++++|++|||+|.+|++++.... +..||+|+++.+.|++..+ .+.++|++..+.-. .+..+
T Consensus 127 ~~~~~vIfisNHQS~~D~~vi~~~l~~~~~~l~~~~~fVAk~eL~~~Pl~~Pfs~g~~l~cI~~kk~id~~p~l~r~~~r 206 (367)
T 1iuq_A 127 QQGHNVVLISNHQTEADPAIISLLLEKTNPYIAENTIFVAGDRVLADPLCKPFSIGRNLICVYSKKHMFDIPELTETKRK 206 (367)
T ss_dssp HTTCEEEEEECCCCTTHHHHHHHHHTTTCHHHHHHCEEEECTHHHHCTTTHHHHHTSEEEECCCGGGTTSSGGGHHHHHH
T ss_pred cCCCcEEEEECCccchhHHHHHHHHhhcccccccceEEEeehhhhcCccccchhhhhheeeEEecccCCCcchhhhhhhH
Confidence 4568999999999999999987776 4599999999977766433 14456777633222 11111
Q ss_pred chHHHHHHHHHHHHhCCCCCeEEEecCceecCC----CC--ccccccccc----c----CCCc--EEEEEEEcCCCCCCC
Q 017555 244 GVSGVVTERVREAHRDKSAPMMMLFPEGTTTNG----DY--LLPFKTGAF----L----ARAP--VLPVILRYPYQRFSP 307 (369)
Q Consensus 244 ~~~~~i~~~l~~~~~~~~g~~l~IFPEGT~sn~----~~--ll~Fk~Gaf----~----~~~p--VvPv~i~y~~~~~~~ 307 (369)
...+.+. .+.+.++. .|..++|||||||+.+ +. ..+|++|+| . +++| |+||+|. ++..+.|
T Consensus 207 ~n~ksl~-~~~~~Lk~-GG~sI~IFPEGTRsR~~~~~g~l~~~~Fk~gs~~~~~~LA~ksg~P~hIvPvaI~-t~~impp 283 (367)
T 1iuq_A 207 ANTRSLK-EMALLLRG-GSQLIWIAPSGGRDRPDPSTGEWYPAPFDASSVDNMRRLIQHSDVPGHLFPLALL-CHDIMPP 283 (367)
T ss_dssp HHHHHHH-HHHHHHHH-CCCEEEECTTCSCCCBCTTTCCBCCCCCCHHHHHHHHHHHHTSSSCEEEEEEEEE-CGGGSCC
T ss_pred HHHHHHH-HHHHHHHc-CCeEEEEeCCCCCCCCCCCCCccccccccchhhhHHHHHHHHcCCCceEEEEEEE-eccccCC
Confidence 1122222 22223332 2568999999999985 33 456999998 3 8999 9999999 6666654
No 2
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=57.30 E-value=11 Score=27.51 Aligned_cols=67 Identities=16% Similarity=0.330 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhCCCCCeEEEecCceecCCCCccccccccccCCCcEEEEEEEcCCCCCCCcccccCCCCCCCHHHHHHHH
Q 017555 248 VVTERVREAHRDKSAPMMMLFPEGTTTNGDYLLPFKTGAFLARAPVLPVILRYPYQRFSPAWDSISGQEKDDPKLYAENV 327 (369)
Q Consensus 248 ~i~~~l~~~~~~~~g~~l~IFPEGT~sn~~~ll~Fk~Gaf~~~~pVvPv~i~y~~~~~~~~~~~~~~~~~~~~~~~a~~v 327 (369)
.+.+.++.... +|.|+++|-.|...|+ +-.|..-+-..++.- +. ....||++++++|
T Consensus 39 dirdiiksmkd--ngkplvvfvngasqnd--vnefqneakkegvsy----------------dv---lkstdpeeltqrv 95 (112)
T 2lnd_A 39 DIRDIIKSMKD--NGKPLVVFVNGASQND--VNEFQNEAKKEGVSY----------------DV---LKSTDPEELTQRV 95 (112)
T ss_dssp HHHHHHHHHTT--CCSCEEEEECSCCHHH--HHHHHHHHHHHTCEE----------------EE---EECCCHHHHHHHH
T ss_pred hHHHHHHHHHh--cCCeEEEEecCccccc--HHHHHHHHHhcCcch----------------hh---hccCCHHHHHHHH
Confidence 44444554433 4679999999877664 335554443333321 11 2466899999999
Q ss_pred HHHHHHHhhh
Q 017555 328 RRLMASERNL 337 (369)
Q Consensus 328 r~~ma~~l~~ 337 (369)
|+-+..++.+
T Consensus 96 reflktagsl 105 (112)
T 2lnd_A 96 REFLKTAGSL 105 (112)
T ss_dssp HHHHHHTTSC
T ss_pred HHHHHhcccc
Confidence 9998887644
No 3
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=10.21 E-value=2.9e+02 Score=23.43 Aligned_cols=35 Identities=17% Similarity=0.158 Sum_probs=24.6
Q ss_pred CCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017555 59 MGRGELP-LAEKFLIGIAMVTLLPIRVVLAMTVLVI 93 (369)
Q Consensus 59 ~pf~p~~-~~~~~~~~~~~~~L~plRl~~~~~~~l~ 93 (369)
.||.|+| ..|.+..++.+.+|.+-+..+.+++.++
T Consensus 41 ip~~pVPiTlQtl~V~LaG~~LG~r~G~lsv~lYll 76 (198)
T 4dve_A 41 IGFIPVPIILQNMGIMMAGGLLGPKYGTISVGAFLA 76 (198)
T ss_dssp CSSSSCCBCSTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCccHHHHHHHHHHHHHChhHHHHHHHHHHH
Confidence 5787777 6667777778888888777666555444
No 4
>2ka4_B P113, signal transducer and activator of transcription 2; CBP/P300, STAT2, TAZ1, transactivation domain, bromodomain, alternative splicing; NMR {Homo sapiens}
Probab=9.95 E-value=1.5e+02 Score=19.62 Aligned_cols=26 Identities=27% Similarity=0.278 Sum_probs=18.7
Q ss_pred cHHHHhhccCCceeccccCCCCCC-CCCHH
Q 017555 39 NIQELEKKFAPYVRNDVYGTMGRG-ELPLA 67 (369)
Q Consensus 39 ~~~~me~Kf~~~~d~d~tGi~pf~-p~~~~ 67 (369)
+.|+|| +|++-..- --|+|.+ |+-+-
T Consensus 18 nte~me-ifrN~~~i--eeImpngdPlLAg 44 (57)
T 2ka4_B 18 NTEPME-IFRNSVKI--EEIMPNGDPLLAG 44 (57)
T ss_dssp CCTGGG-GGTTSCCT--TTSSCSSCSTTHH
T ss_pred ChHHHH-HHhccccH--hhcccCCCccccc
Confidence 556899 99988766 3488888 66443
No 5
>4a17_U RPL35, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_U 4a1c_U 4a1e_U
Probab=8.21 E-value=4.2e+02 Score=20.70 Aligned_cols=40 Identities=18% Similarity=0.193 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhhhhhhccchHHHHHHHHHhcCCCCCCcccccCC
Q 017555 325 ENVRRLMASERNLILSDIGLAEKRIYHAALNGNNSLPSVLHQKD 368 (369)
Q Consensus 325 ~~vr~~ma~~l~~~~~~~~~~dk~~~~~~~~~~~~~~~~~~~~~ 368 (369)
..||..||+.. |-+...++..-...+.|+.-+|.|+..|.
T Consensus 49 r~vRRdIARi~----Tvl~er~~~~lr~~yk~kk~~P~dlr~kk 88 (124)
T 4a17_U 49 GIVRKAIAKYL----TIINEKRRQAVKDQFKGKSLKPLDIRVKK 88 (124)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHTTCSSCCTTTSCCS
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHcCCCCCCcccCchH
Confidence 45777777763 33445667777888888877999988763
No 6
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A
Probab=7.62 E-value=3.7e+02 Score=23.10 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEecCceec
Q 017555 246 SGVVTERVREAHRDKSAPMMMLFPEGTTT 274 (369)
Q Consensus 246 ~~~i~~~l~~~~~~~~g~~l~IFPEGT~s 274 (369)
.+.+.+.++++... +.-+++|||-..+
T Consensus 20 ~~~~~~~i~~A~~~--gadlvvfPE~~~~ 46 (262)
T 3ivz_A 20 YSKAEKLIKEASKQ--GAQLVVLPELFDT 46 (262)
T ss_dssp HHHHHHHHHHHHHT--TCSEEECCTTTTT
T ss_pred HHHHHHHHHHHHHC--CCCEEEeCCCccc
Confidence 33445555555544 3469999996554
No 7
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP}
Probab=7.53 E-value=3.7e+02 Score=23.55 Aligned_cols=26 Identities=15% Similarity=0.245 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhCCCCCeEEEecCceec
Q 017555 247 GVVTERVREAHRDKSAPMMMLFPEGTTT 274 (369)
Q Consensus 247 ~~i~~~l~~~~~~~~g~~l~IFPEGT~s 274 (369)
+.+.+.++++.+. +.-+++|||-..+
T Consensus 40 ~~~~~~i~~A~~~--gadlvvfPE~~l~ 65 (283)
T 3hkx_A 40 DLIDDAAARASEQ--GAQLLLTPELFGF 65 (283)
T ss_dssp HHHHHHHHHHHHT--TCSEEECCTTGGG
T ss_pred HHHHHHHHHHHHC--CCCEEEcCCCccc
Confidence 3444555555544 3469999997665
No 8
>2i9o_A MHB8A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}
Probab=7.43 E-value=2.2e+02 Score=16.54 Aligned_cols=17 Identities=24% Similarity=0.386 Sum_probs=13.9
Q ss_pred CCCHHHHHHHHHHHHHH
Q 017555 317 KDDPKLYAENVRRLMAS 333 (369)
Q Consensus 317 ~~~~~~~a~~vr~~ma~ 333 (369)
....+.++.++.++|++
T Consensus 20 gsaaeayakriaeamak 36 (37)
T 2i9o_A 20 GSAAEAYAKRIAEAMAK 36 (37)
T ss_dssp CSSHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHhc
Confidence 45688999999999874
No 9
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=7.25 E-value=5.8e+02 Score=19.97 Aligned_cols=80 Identities=8% Similarity=0.053 Sum_probs=42.3
Q ss_pred HHHHHHHhCCCCCeEEEecCceecCCCCccccccccc---cCCCcEEEEEEEcCCCC---CCCcccccCC--CCCCCHHH
Q 017555 251 ERVREAHRDKSAPMMMLFPEGTTTNGDYLLPFKTGAF---LARAPVLPVILRYPYQR---FSPAWDSISG--QEKDDPKL 322 (369)
Q Consensus 251 ~~l~~~~~~~~g~~l~IFPEGT~sn~~~ll~Fk~Gaf---~~~~pVvPv~i~y~~~~---~~~~~~~~~~--~~~~~~~~ 322 (369)
+.+.+.+.... ..|+|+-+......-.+.++....- ..+..|+||...-+..- .++.+..... ....+.++
T Consensus 65 ~~i~~ai~~s~-~~i~v~S~~y~~S~wc~~El~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~~~~~~~~ 143 (154)
T 3h16_A 65 RSIDKGLGSSR-FGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNTSTKSVDE 143 (154)
T ss_dssp HHHHHHHTSEE-EEEEEEEHHHHTTCCCHHHHHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEETTTSCHHH
T ss_pred HHHHHHHHhCc-EEEEEeCcchhcChHHHHHHHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhcCcccHHH
Confidence 34555555433 4677777766555444444433221 24567999987543221 1111111111 34567888
Q ss_pred HHHHHHHHH
Q 017555 323 YAENVRRLM 331 (369)
Q Consensus 323 ~a~~vr~~m 331 (369)
+++.+.+++
T Consensus 144 ia~~l~~lv 152 (154)
T 3h16_A 144 IVADLMAII 152 (154)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888888776
No 10
>3u5e_h 60S ribosomal protein L35-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 1s1i_X 2wwa_N 2ww9_N 3izc_c 3izs_c 2wwb_N 3o5h_c 3o58_c 3u5i_h 4b6a_h
Probab=7.23 E-value=4.3e+02 Score=20.53 Aligned_cols=40 Identities=20% Similarity=0.267 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhhhhhhccchHHHHHHHHHhcCCCCCCcccccCC
Q 017555 325 ENVRRLMASERNLILSDIGLAEKRIYHAALNGNNSLPSVLHQKD 368 (369)
Q Consensus 325 ~~vr~~ma~~l~~~~~~~~~~dk~~~~~~~~~~~~~~~~~~~~~ 368 (369)
..||..||... |-+...+...-...+.|+.-+|.|+..|.
T Consensus 45 r~vRR~IARi~----Tvl~er~~~~lr~~yk~kk~~p~dlr~kk 84 (120)
T 3u5e_h 45 KTVRKSIACVL----TVINEQQREAVRQLYKGKKYQPKDLRAKK 84 (120)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHTTSSSSCCCTTTSCCS
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHcCCCCCCcccCchH
Confidence 55777777763 33344566777788888877999988763
Done!