RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 017555
(369 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.9 bits (126), Expect = 1e-07
Identities = 33/213 (15%), Positives = 68/213 (31%), Gaps = 38/213 (17%)
Query: 148 ITETFRILDVQEKSENEAKNQSKDEDEAKDQD-------EESGRPGAIISNHVSYLDILY 200
++ T R+ + E + +E + E +P + ++ D LY
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120
Query: 201 HMSSSFPSFVAKRSVAKLPLVGLISKCLGCVYVQRESKSSDFKGVSGVV----TERVREA 256
+ + F K +V++L + + L E + + + GV+ T +
Sbjct: 121 NDNQVFA----KYNVSRLQPYLKLRQAL------LELRPAKNVLIDGVLGSGKTWVALDV 170
Query: 257 HRDKSAPMMMLFPEGTTTNGDYLLPFKTGAFLARAPVLPVILRYPYQRFSPAWDSISGQE 316
M F + L K + +L+ + P W S S
Sbjct: 171 CLSYKVQCKMDF-------KIFWLNLKN---CNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 317 KDDPKLY---AENVRRLMASERN----LILSDI 342
+ +RRL+ S+ L+L ++
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253
Score = 31.0 bits (69), Expect = 0.75
Identities = 33/163 (20%), Positives = 45/163 (27%), Gaps = 47/163 (28%)
Query: 179 DEESGRPGAIISNHVSYLDILYHMSSSFPSFVAKRSVAKLPLVGLISKCLGCVYVQRESK 238
D E+G + Y DIL +FV C VQ K
Sbjct: 8 DFETGE------HQYQYKDILSVFE---DAFV---------------DNFDCKDVQDMPK 43
Query: 239 ----SSDFKGV--SGVVTERVR---EAHRDKSAPMMMLFPEGT-TTNGDYLL-PFKTGAF 287
+ + S K M+ F E N +L+ P KT
Sbjct: 44 SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT--- 100
Query: 288 LARAPVLPVILRYPYQRFSPAWDSISGQEKDDPKLYAENVRRL 330
R P + Y QR ++ D+ NV RL
Sbjct: 101 EQRQPSMMTR-MYIEQR-DRLYN-------DNQVFAKYNVSRL 134
Score = 30.2 bits (67), Expect = 1.4
Identities = 55/400 (13%), Positives = 107/400 (26%), Gaps = 132/400 (33%)
Query: 7 DLNSKQLKSTASS---DDGGSAKDDRPLLKPDAADNIQELEKK--FAPYVRNDVYGTMGR 61
+L+ K L +T D +A L + + E K Y+
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLD-HHSMTLTPDEVKSLLLKYLDCRP------ 315
Query: 62 GELPLAEKFLIG---IAMVTLLPIRVVLAMTVLVIYYLICRVCTLFSA------PNRGED 112
+LP E ++++ IR LA + ++ T+ + P +
Sbjct: 316 QDLP-REVLTTNPRRLSIIAES-IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA---E 370
Query: 113 EQEDYAHMGGWRRSVVVVTGRFLSRVMLFVLGFYW---ITE------------------- 150
++ + + + S + +L W I
Sbjct: 371 YRKMFDRLSVFPPSA---------HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
Query: 151 ---TFRI----LDVQEKSENEAKNQSK--DEDEAKDQDEESGRPGAIISNHVSYLDILYH 201
T I L+++ K ENE D + + + Y I +H
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF-YSHIGHH 480
Query: 202 MSSSFPSFVAKRSVAKLPLVGLISKCLGCVYVQRESKSSDFKGVSGVVTERVREAHRDKS 261
+ + + +V L DF+ + ++R
Sbjct: 481 LKNIEHP----ERMTLFRMVFL-----------------DFRFLEQ----KIRH------ 509
Query: 262 APMMMLFPEGTTTNGDYLLPFKTGAFLARAPVLPVI--LRYPYQRFSPAWDSISGQEKDD 319
+ T N A +L + L++ Y+ + I +
Sbjct: 510 --------DSTAWN-------------ASGSILNTLQQLKF-YKPY------ICDNDPKY 541
Query: 320 PKLYAENVRRLMASERNLILSDIGLAEKRIYHAALNGNNS 359
+L + L E NLI S + AL +
Sbjct: 542 ERLVNAILDFLPKIEENLICSK----YTDLLRIALMAEDE 577
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.4 bits (81), Expect = 0.033
Identities = 53/386 (13%), Positives = 103/386 (26%), Gaps = 148/386 (38%)
Query: 29 RPLLKP---DAADNIQELEKKFAPYVRNDVYGT--------MGRGELPLAEKFLIGIAMV 77
L+ +A+ + EL + V+ P + +L+ I +
Sbjct: 181 HVLVGDLIKFSAETLSELIR--TTLDAEKVFTQGLNILEWLENPSNTP-DKDYLLSIP-I 236
Query: 78 TLLPIRVVLAMTVLVIYYLICRVCTLFSAPNRGEDEQEDYAHM-GGWRRSVVVVTGRFLS 136
+ P+ + + L Y + ++ G E +++ G S +VT ++
Sbjct: 237 SC-PL---IGVIQLAHYVVTAKLL--------GFTPGELRSYLKGATGHSQGLVTAVAIA 284
Query: 137 ------------RVMLFVLGFYWI----TETFRILDVQEKSENEAKNQSKDEDEAKDQDE 180
R + VL F +I E + + S + +E
Sbjct: 285 ETDSWESFFVSVRKAITVL-F-FIGVRCYEAYPNTSL----PPSILEDSLENNE------ 332
Query: 181 ESGRPGAIISNHVSYLDILYHMSSSFPSFVAKRSVAKLPLVGLISKCLGCVYVQRESKSS 240
G P M S + ++ + + ++K ++ +
Sbjct: 333 --GVPS--------------PMLS-----I--SNLTQEQVQDYVNKT--NSHLPAGKQVE 367
Query: 241 DFKGVS---G----VVT------ERVREAHRDKSAPMMMLFPEGTTTNGDYLLPFKTGAF 287
+S G VV+ + R AP G + +PF
Sbjct: 368 ----ISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPS------GLDQSR---IPFS---- 410
Query: 288 LARAPV-----LPVILRYPYQRFSPAWDSISGQEKDDPKLYAENVRRLMASERNLILSDI 342
R LPV P+ S L+ +LI D+
Sbjct: 411 -ERKLKFSNRFLPVAS--PF--HSH----------------------LLVPASDLINKDL 443
Query: 343 GLAEKRIYHAALNGNNSLPSVLHQKD 368
+ +P V D
Sbjct: 444 VKNNVSFNAKDIQ----IP-VYDTFD 464
Score = 30.4 bits (68), Expect = 1.4
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 61 RGEL-----PLAEKFLIGIAMVTLLPIRVVLAMTVLVIYYLICRVC 101
RG P E M+ + P RV + + + Y++ RV
Sbjct: 1789 RGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVG 1834
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.3 bits (70), Expect = 0.30
Identities = 13/77 (16%), Positives = 21/77 (27%), Gaps = 29/77 (37%)
Query: 105 SAPNRGEDEQEDYAHMGGWRRSVVVVTGRFLSRVMLFVLGFYWITETFRILDVQEKSENE 164
+ +R E E + WR E R +QE
Sbjct: 75 AQADRLTQEPE---SIRKWR-------------------------EEQRK-RLQELDAAS 105
Query: 165 AKNQSKDEDEAKDQDEE 181
+ + ++AK EE
Sbjct: 106 KVMEQEWREKAKKDLEE 122
Score = 29.0 bits (64), Expect = 1.7
Identities = 7/41 (17%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Query: 147 WITETFRILDVQEKSENE----AKNQSKDEDEA--KDQDEE 181
W + + L+ + ++E K ++ D+A + D +
Sbjct: 112 WREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDAD 152
>1d1r_A Hypothetical 11.4 KD protein YCIH in PYRF-OSMB intergenic region;
alpha-beta plait, open-faced beta sandwich,
ferredoxin-like fold; NMR {Escherichia coli} SCOP:
d.64.1.1
Length = 116
Score = 27.8 bits (62), Expect = 2.3
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 2 ESELKDLNSKQLKSTASSDDGGSAKDDRPLLKPDAADNIQE-LEKK 46
++EL L + +LK GG+ KD ++ D D ++ LE K
Sbjct: 57 DAELTKL-AAELKKKCGC--GGAVKDGVIEIQGDKRDLLKSLLEAK 99
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four
helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1
PDB: 1k30_A
Length = 367
Score = 28.2 bits (62), Expect = 4.8
Identities = 21/112 (18%), Positives = 34/112 (30%), Gaps = 25/112 (22%)
Query: 181 ESGRPGAIISNHVSYLD------ILYHMSSSFPS---FVAKRSVAKLPLVGLISKCLG-- 229
+ G +ISNH + D +L + FVA V PL S
Sbjct: 127 QQGHNVVLISNHQTEADPAIISLLLEKTNPYIAENTIFVAGDRVLADPLCKPFSIGRNLI 186
Query: 230 CVYVQRESKSSDFKGVSGVVTERVREAHRDKSAPMMML---------FPEGT 272
CVY ++ + + + + R ++L P G
Sbjct: 187 CVYSKK-----HMFDIPELTETKRKANTRSLKEMALLLRGGSQLIWIAPSGG 233
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.390
Gapped
Lambda K H
0.267 0.0501 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,546,715
Number of extensions: 332218
Number of successful extensions: 535
Number of sequences better than 10.0: 1
Number of HSP's gapped: 532
Number of HSP's successfully gapped: 9
Length of query: 369
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 274
Effective length of database: 4,049,298
Effective search space: 1109507652
Effective search space used: 1109507652
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.7 bits)