BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017557
         (369 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
           And O-glucosyltransferase Involved In Xenobiotic
           Metabolism In Plants
 pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
           And O-Glucosyltransferase Involved In Xenobiotic
           Metabolism In Plants
 pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
           And O-Glucosyltransferase Involved In Xenobiotic
           Metabolism In Plants
          Length = 480

 Score =  103 bits (257), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/179 (35%), Positives = 92/179 (51%), Gaps = 14/179 (7%)

Query: 176 SLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTG---------HDTIE--SAL 224
           S+++ + GS   L  +Q  EL LG   +   F   ++ P+G         H   +  + L
Sbjct: 269 SVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFL 328

Query: 225 PEGFEERVKGRGFVHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGD 284
           P GF ER K RGFV   W  Q  +L HPS G F+THCG  S  E++V+   L+  P   +
Sbjct: 329 PPGFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAE 388

Query: 285 QIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAVMDDDSEVGKDARQNHAELRE 343
           Q +N+ L+ ED++  +    GD DGL  R+ V + VK +M  + E GK  R    EL+E
Sbjct: 389 QKMNAVLLSEDIRAALRPRAGD-DGLVRREEVARVVKGLM--EGEEGKGVRNKMKELKE 444


>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
           Glucosyltransferase Reveals The Basis For Plant Natural
           Product Modification
 pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
           Glucosyltransferase Reveals The Basis For Plant Natural
           Product Modification
 pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
           Glucosyltransferase Reveals The Basis For Plant Natural
           Product Modification
          Length = 456

 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/330 (26%), Positives = 149/330 (45%), Gaps = 36/330 (10%)

Query: 27  FTYWLPSLARKLGIKSIAFVTVSPATVGYLLSPERKLRDKFLT------EADLLQPPQGF 80
           F ++   +A ++G+  + F T  P ++   +  + ++R+K         E +LL     F
Sbjct: 121 FIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYID-EIREKIGVSGIQGREDELLN----F 175

Query: 81  PPSKIKLRAHEARGLAAATVKDFGGLS-----FMERLLLCLTECDAIGFKTCREIEGAYC 135
            P   K+R    R L    V  FG L+      + R+   L +  A+   +  E++ +  
Sbjct: 176 IPGMSKVRF---RDLQEGIV--FGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSLT 230

Query: 136 DCVESQFEKRVILAGP--VLPEPPASVXXXXXXXXXXXXKAKSLIFCALGSECVLKKDQF 193
           + ++S+  K  +  GP  ++  PP               K  S+++ + G+       + 
Sbjct: 231 NDLKSKL-KTYLNIGPFNLITPPPVVPNTTGCLQWLKERKPTSVVYISFGTVTTPPPAEV 289

Query: 194 QELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGRGFVHGGWVQQQLILKHPS 253
             L    E + +PF  +L+     D     LPEGF E+ +G G V   W  Q  +L H +
Sbjct: 290 VALSEALEASRVPFIWSLR-----DKARVHLPEGFLEKTRGYGMVVP-WAPQAEVLAHEA 343

Query: 254 VGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGLFTR 313
           VG FVTHCG  SL E++     L+  P  GDQ +N R++ + L++GV +    E G+FT+
Sbjct: 344 VGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRI----EGGVFTK 399

Query: 314 DGVCKAVKAVMDDDSEVGKDARQNHAELRE 343
            G+      ++    E GK  R+N   LRE
Sbjct: 400 SGLMSCFDQILSQ--EKGKKLRENLRALRE 427


>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
 pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
          Length = 454

 Score = 78.6 bits (192), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 84/168 (50%), Gaps = 12/168 (7%)

Query: 176 SLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGR 235
           S+++ + GS       +   L    E  G PF  + +        +  LP+GF ER K +
Sbjct: 274 SVVYISFGSVVTPPPHELTALAESLEECGFPFIWSFR-----GDPKEKLPKGFLERTKTK 328

Query: 236 GFVHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGED 295
           G +   W  Q  ILKH SVG F+TH G  S+ E +V    ++  P  GDQ +N+ L    
Sbjct: 329 GKI-VAWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESV 387

Query: 296 LKVGVEVERGDEDGLFTRDGVCKAVKAVMDDDSEVGKDARQNHAELRE 343
           L++GV    G ++G+ T++ + KA++  M   SE G   RQ   +L+E
Sbjct: 388 LEIGV----GVDNGVLTKESIKKALELTM--SSEKGGIMRQKIVKLKE 429


>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
 pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
          Length = 463

 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 83/366 (22%), Positives = 156/366 (42%), Gaps = 27/366 (7%)

Query: 1   MTAMDLTEPAIEAIVRDIKPN----IVFFDFTYWLPSLARKLGIKSIAFVTVSPATVGYL 56
           +T ++   P ++A ++ I  N    +V   F   +  +  + GI S  F+T +   +  +
Sbjct: 93  LTFLESLIPHVKATIKTILSNKVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLM 152

Query: 57  LSPERKLRDKFLTEADLLQPPQGFPPSKIKLRAHEARGLAAATVKDFGGLSFMERLLLCL 116
           LS + +  ++   ++D        P    ++ ++    L  A     GG     +L    
Sbjct: 153 LSLKNRQIEEVFDDSDRDHQLLNIPGISNQVPSNV---LPDACFNKDGGYIAYYKLAERF 209

Query: 117 TECDAIGFKTCREIEGAYCDCVESQFEK--RVILAGPVL-----PEPPASVXXXXXXXXX 169
            +   I   T  ++E +  D +    EK   +   GP+L     P P             
Sbjct: 210 RDTKGIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQHDLILKW 269

Query: 170 XXXKA-KSLIFCALGSECV-LKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEG 227
              +  KS++F   GS  V     Q +E+ LG + +G+ F  +      +   +   PEG
Sbjct: 270 LDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWS------NSAEKKVFPEG 323

Query: 228 FEE--RVKGRGFVHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQ 285
           F E   ++G+G +  GW  Q  +L H ++G FV+HCG  S+ E+M     ++  P   +Q
Sbjct: 324 FLEWMELEGKGMI-CGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQ 382

Query: 286 IINS-RLMGE-DLKVGVEVERGDEDGLFTRDGVCKAVKAVMDDDSEVGKDARQNHAELRE 343
            +N+ RL+ E  + +G+ V+      +   + + K +K +MD DS V K  ++     R 
Sbjct: 383 QLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHKKVQEMKEMSRN 442

Query: 344 FLISPG 349
            ++  G
Sbjct: 443 AVVDGG 448


>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
           With Udp-Glucose
 pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
           With Udp-Glucose
          Length = 465

 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 157/372 (42%), Gaps = 39/372 (10%)

Query: 1   MTAMDLTEPAIEAIVRDIKPN----IVFFDFTYWLPSLARKLGIKSIAFVTVSPATVGYL 56
           +T ++   P ++A ++ I  N    +V   F   +  +  + GI S  F+T +   +  +
Sbjct: 93  LTFLESLIPHVKATIKTILSNKVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLM 152

Query: 57  LSPERKLRDKFLTEAD----LLQPP--QGFPPSKIKLRAHEARGLAAATVKDFGGLSFME 110
           LS + +  ++   ++D    LL  P      PS +         L  A     GG     
Sbjct: 153 LSLKNRQIEEVFDDSDRDHQLLNIPGISNQVPSNV---------LPDACFNKDGGYIAYY 203

Query: 111 RLLLCLTECDAIGFKTCREIEGAYCDCVESQFEK--RVILAGPVL-----PEPPASVXXX 163
           +L     +   I   T  ++E +  D +    EK   +   GP+L     P P       
Sbjct: 204 KLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQH 263

Query: 164 XXXXXXXXXKA-KSLIFCALGSECV-LKKDQFQELILGFELTGLPFFAALKPPTGHDTIE 221
                    +  KS++F   GS  V     Q +E+ LG + +G+ F  +      +   +
Sbjct: 264 DLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWS------NSAEK 317

Query: 222 SALPEGFEE--RVKGRGFVHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLL 279
              PEGF E   ++G+G +  GW  Q  +L H ++G FV+HCG  S+ E+M     ++  
Sbjct: 318 KVFPEGFLEWMELEGKGMI-CGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTW 376

Query: 280 PNVGDQIINS-RLMGE-DLKVGVEVERGDEDGLFTRDGVCKAVKAVMDDDSEVGKDARQN 337
           P   +Q +N+ RL+ E  + +G+ V+      +   + + K +K +MD DS V K  ++ 
Sbjct: 377 PIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHKKVQEM 436

Query: 338 HAELREFLISPG 349
               R  ++  G
Sbjct: 437 KEMSRNAVVDGG 448


>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
           Into The Structural Basis Of A Multifunctional (Iso)
           Flavonoid Glycosyltransferase
          Length = 482

 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 77/170 (45%), Gaps = 13/170 (7%)

Query: 176 SLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPP--TGHDTIESALPEGFEERVK 233
           S+++   GS  V+  +Q  E   G       F   ++P    G   I S+    F   + 
Sbjct: 296 SVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSS---EFTNEIA 352

Query: 234 GRGFVHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINSRLMG 293
            RG +   W  Q  +L HPS+G F+THCG  S +E++     ++  P   DQ  + R + 
Sbjct: 353 DRGLI-ASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFIC 411

Query: 294 EDLKVGVEVERGDEDGLFTRDGVCKAVKAVMDDDSEVGKDARQNHAELRE 343
            + ++G+E+     D    R+ + K +  V+  D   GK  +Q   EL++
Sbjct: 412 NEWEIGMEI-----DTNVKREELAKLINEVIAGDK--GKKMKQKAMELKK 454


>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
           Blueprint For Antibiotic Engineering
 pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
           Blueprint For Antibiotic Engineering
          Length = 424

 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 7/85 (8%)

Query: 242 WVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVE 301
           WV Q  IL   S   F+TH G GS  EA+ N   +V +P + +Q +N+  + E L +G  
Sbjct: 312 WVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVE-LGLGRH 368

Query: 302 VERGDEDGLFTRDGVCKAVKAVMDD 326
           + R       T + + +AV AV  D
Sbjct: 369 IPRDQ----VTAEKLREAVLAVASD 389


>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
           Blueprint For Antibiotic Engineering
 pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
           Blueprint For Antibiotic Engineering
          Length = 430

 Score = 39.7 bits (91), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 8/100 (8%)

Query: 242 WVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVE 301
           WV Q  IL+      FVTH G+G   E +     ++ +P   DQ  N+     D+  G+ 
Sbjct: 290 WVPQLAILRQ--ADLFVTHAGAGGSQEGLATATPMIAVPQAVDQFGNA-----DMLQGLG 342

Query: 302 VERGDEDGLFTRDGVCKAVKAVMDDDSEVGKDARQNHAEL 341
           V R       T D + +   A++ DD EV +  R+  AE+
Sbjct: 343 VARKLATEEATADLLRETALALV-DDPEVARRLRRIQAEM 381


>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
           Domain Of The Human Drug Metabolizing
           Udp-Glucuronosyltransferase 2b7
 pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
           Domain Of The Human Drug Metabolizing
           Udp-Glucuronosyltransferase 2b7
          Length = 170

 Score = 37.4 bits (85), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 14/103 (13%)

Query: 242 WVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQ---IINSRLMGEDLKV 298
           W+ Q  +L HP    F+TH G+  + EA+ +    V +P   DQ   I + +  G  ++V
Sbjct: 75  WIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDNIAHXKARGAAVRV 134

Query: 299 GVEVERGDEDGLFTRDGVCKAVKAVMDDDS---EVGKDARQNH 338
                   +        +  A+K V++D S    V K +R  H
Sbjct: 135 DFNTXSSTD--------LLNALKRVINDPSYKENVXKLSRIQH 169


>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
 pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
 pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
 pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
 pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
 pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
          Length = 332

 Score = 33.1 bits (74), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 7/91 (7%)

Query: 10  AIEAIVRDIKPNIVFFDFTYWLPSLARKLGIKSI----AFVTVSPATVGY---LLSPERK 62
            ++A+ ++I P+    D      S  RK   K +    A V V+           SP RK
Sbjct: 44  GLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRK 103

Query: 63  LRDKFLTEADLLQPPQGFPPSKIKLRAHEAR 93
           L+  ++++  L++ P   P S ++LR H+ R
Sbjct: 104 LQKLYISKNHLVEIPPNLPSSLVELRIHDNR 134


>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
 pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
           Structure)
 pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
           Structure)
 pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
           Structure)
          Length = 306

 Score = 31.2 bits (69), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 58/142 (40%), Gaps = 18/142 (12%)

Query: 209 AALKPPTGHDTIESALPEGFEERVKGRGFVHGGWVQQQL-----ILKHPSVGCFVTHCGS 263
           AA +    HD I  A PEG+  +V  RG    G  +Q++     ILK P +        +
Sbjct: 162 AAAQAAGIHDAI-MAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSA 220

Query: 264 ----------GSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGLFTR 313
                      SL++   N   +V+   +   +   +++   +K G  VERG  + L +R
Sbjct: 221 LDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQIL--VIKDGCIVERGRHEALLSR 278

Query: 314 DGVCKAVKAVMDDDSEVGKDAR 335
            GV   +  +     E  +D +
Sbjct: 279 GGVYADMWQLQQGQEETSEDTK 300


>pdb|3V7P|A Chain A, Crystal Structure Of Amidohydrolase Nis_0429 (Target
           Efi-500396) From Nitratiruptor Sp. Sb155-2
          Length = 427

 Score = 31.2 bits (69), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 43/111 (38%), Gaps = 14/111 (12%)

Query: 237 FVHGGWVQQQLILKHPSVGCFVTHC-------GSGSLSEAMVNECQLVLLPNVGDQIINS 289
           FVH  W  ++ I    S    + HC       G+G L    +      +  + G     S
Sbjct: 255 FVHMVWANEEEIQTIASYNAHIIHCPISNRLLGNGVLDLEKIKSIPYAIATD-GLSSNYS 313

Query: 290 RLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAVMD------DDSEVGKDA 334
             M E+LK  + V    E   F ++ + +A KA  D       +  VGKDA
Sbjct: 314 LNMYEELKAALFVHPNKEATTFAKELIIRATKAGYDALGFEGGEIAVGKDA 364


>pdb|2YJN|A Chain A, Structure Of The Glycosyltransferase Eryciii From The
           Erythromycin Biosynthetic Pathway, In Complex With Its
           Activating Partner, Erycii
          Length = 441

 Score = 30.0 bits (66), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 38/100 (38%), Gaps = 21/100 (21%)

Query: 252 PSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGL- 310
           P+    V H G GS   A ++    V+LP+  D              GV  +R  E G  
Sbjct: 334 PTCAATVHHGGPGSWHTAAIHGVPQVILPDGWD-------------TGVRAQRTQEFGAG 380

Query: 311 -------FTRDGVCKAVKAVMDDDSEVGKDARQNHAELRE 343
                   T D + ++VK V+DD +     AR     L E
Sbjct: 381 IALPVPELTPDQLRESVKRVLDDPAHRAGAARMRDDMLAE 420


>pdb|4J2U|A Chain A, Crystal Structure Of An Enoyl-coa Hydratase From
           Rhodobacter Sphaeroides 2.4.1
 pdb|4J2U|B Chain B, Crystal Structure Of An Enoyl-coa Hydratase From
           Rhodobacter Sphaeroides 2.4.1
          Length = 365

 Score = 28.9 bits (63), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 12/66 (18%)

Query: 235 RGFVHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGE 294
           +GF  GG V          +GC   H   G  S+    EC + L+P+VG   + +R  G 
Sbjct: 129 QGFTXGGGV---------GLGCHARHRIVGETSQISXPECAIGLVPDVGGTHLLARAPG- 178

Query: 295 DLKVGV 300
             ++GV
Sbjct: 179 --RIGV 182


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.140    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,661,080
Number of Sequences: 62578
Number of extensions: 432460
Number of successful extensions: 1034
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1024
Number of HSP's gapped (non-prelim): 20
length of query: 369
length of database: 14,973,337
effective HSP length: 100
effective length of query: 269
effective length of database: 8,715,537
effective search space: 2344479453
effective search space used: 2344479453
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)