Query 017557
Match_columns 369
No_of_seqs 203 out of 1629
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 09:38:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017557.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017557hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02670 transferase, transfer 100.0 1.8E-58 4E-63 450.4 36.4 360 3-366 94-467 (472)
2 PLN02208 glycosyltransferase f 100.0 4.2E-58 9E-63 446.5 34.6 346 3-364 91-439 (442)
3 PLN02764 glycosyltransferase f 100.0 6.8E-58 1.5E-62 443.2 35.5 353 3-366 92-447 (453)
4 PLN00414 glycosyltransferase f 100.0 8.4E-57 1.8E-61 437.8 35.8 347 3-366 91-442 (446)
5 PLN02863 UDP-glucoronosyl/UDP- 100.0 2E-56 4.3E-61 438.6 35.3 357 3-366 96-473 (477)
6 PLN02992 coniferyl-alcohol glu 100.0 9.2E-56 2E-60 431.9 35.1 354 3-365 86-470 (481)
7 PLN03015 UDP-glucosyl transfer 100.0 1.3E-55 2.8E-60 428.7 34.5 356 3-362 89-466 (470)
8 PLN02173 UDP-glucosyl transfer 100.0 1.5E-55 3.1E-60 428.1 34.1 336 5-363 85-447 (449)
9 PLN02410 UDP-glucoronosyl/UDP- 100.0 4.1E-55 8.8E-60 426.5 34.6 346 5-364 85-450 (451)
10 PLN00164 glucosyltransferase; 100.0 7.1E-55 1.5E-59 428.8 35.4 360 3-366 92-475 (480)
11 PLN02534 UDP-glycosyltransfera 100.0 7.8E-55 1.7E-59 426.9 34.3 361 3-368 101-490 (491)
12 PLN02207 UDP-glycosyltransfera 100.0 1.7E-54 3.6E-59 422.2 35.4 348 8-366 99-467 (468)
13 PLN03004 UDP-glycosyltransfera 100.0 5.8E-55 1.3E-59 424.1 30.3 335 3-348 92-441 (451)
14 PLN03007 UDP-glucosyltransfera 100.0 2E-54 4.3E-59 427.3 33.8 354 4-365 107-481 (482)
15 PLN02555 limonoid glucosyltran 100.0 4E-54 8.6E-59 421.3 33.5 353 6-367 98-472 (480)
16 PLN02562 UDP-glycosyltransfera 100.0 8.9E-54 1.9E-58 418.0 34.1 342 3-363 82-448 (448)
17 PLN02210 UDP-glucosyl transfer 100.0 1.3E-53 2.9E-58 417.3 34.6 343 5-363 89-454 (456)
18 PLN02554 UDP-glycosyltransfera 100.0 2.5E-53 5.5E-58 419.0 33.1 336 21-365 114-479 (481)
19 PLN02167 UDP-glycosyltransfera 100.0 4.4E-53 9.6E-58 416.7 34.2 353 4-366 93-474 (475)
20 PLN02152 indole-3-acetate beta 100.0 5.7E-53 1.2E-57 410.6 31.8 338 4-362 86-454 (455)
21 PLN02448 UDP-glycosyltransfera 100.0 3.1E-51 6.7E-56 402.6 34.4 346 5-365 92-458 (459)
22 PHA03392 egt ecdysteroid UDP-g 100.0 1.8E-46 4E-51 371.5 29.9 317 8-366 123-468 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 2.3E-47 4.9E-52 381.5 7.5 314 10-367 110-446 (500)
24 KOG1192 UDP-glucuronosyl and U 100.0 6.6E-37 1.4E-41 305.8 18.8 311 19-367 114-458 (496)
25 TIGR01426 MGT glycosyltransfer 100.0 3.1E-34 6.6E-39 278.3 27.8 305 8-361 81-389 (392)
26 cd03784 GT1_Gtf_like This fami 100.0 3.1E-31 6.7E-36 257.9 23.1 291 7-355 92-395 (401)
27 COG1819 Glycosyl transferases, 100.0 1.8E-30 3.9E-35 251.0 19.9 191 142-365 211-401 (406)
28 PRK12446 undecaprenyldiphospho 99.8 1.7E-18 3.6E-23 165.2 22.9 174 144-340 154-335 (352)
29 PF13528 Glyco_trans_1_3: Glyc 99.8 9.6E-19 2.1E-23 164.8 18.2 229 7-323 82-317 (318)
30 COG0707 MurG UDP-N-acetylgluco 99.7 3.8E-16 8.3E-21 148.0 22.7 135 174-325 182-323 (357)
31 TIGR00661 MJ1255 conserved hyp 99.7 3.8E-16 8.3E-21 147.5 19.8 122 175-325 188-313 (321)
32 PRK00726 murG undecaprenyldiph 99.6 1.4E-13 3E-18 131.9 21.0 114 236-361 236-354 (357)
33 cd03785 GT1_MurG MurG is an N- 99.6 1.7E-13 3.7E-18 130.6 19.8 178 144-344 152-337 (350)
34 PF04101 Glyco_tran_28_C: Glyc 99.6 1.1E-16 2.4E-21 136.7 -2.4 135 177-325 1-143 (167)
35 PRK13608 diacylglycerol glucos 99.5 2.4E-12 5.1E-17 125.0 22.1 133 173-325 200-337 (391)
36 PRK13609 diacylglycerol glucos 99.5 3.7E-12 7.9E-17 123.1 21.8 166 173-363 200-370 (380)
37 PLN02605 monogalactosyldiacylg 99.5 2.1E-11 4.5E-16 118.0 24.0 173 164-359 195-375 (382)
38 TIGR00215 lpxB lipid-A-disacch 99.5 3.2E-12 6.9E-17 123.7 18.2 202 144-360 158-384 (385)
39 PRK00025 lpxB lipid-A-disaccha 99.3 6.9E-11 1.5E-15 114.1 19.1 199 145-363 155-375 (380)
40 TIGR01133 murG undecaprenyldip 99.3 8.8E-11 1.9E-15 111.8 17.7 90 244-345 243-335 (348)
41 TIGR03492 conserved hypothetic 99.2 5.5E-10 1.2E-14 108.4 19.2 191 143-360 179-393 (396)
42 TIGR03590 PseG pseudaminic aci 99.1 3.8E-09 8.1E-14 97.8 16.1 104 176-291 171-278 (279)
43 cd03814 GT1_like_2 This family 99.0 3.9E-07 8.5E-12 86.1 25.2 274 9-361 73-362 (364)
44 COG4671 Predicted glycosyl tra 98.9 2.6E-08 5.6E-13 91.5 13.6 184 119-325 168-364 (400)
45 PRK14089 ipid-A-disaccharide s 98.9 8.2E-08 1.8E-12 91.0 16.0 183 143-359 143-344 (347)
46 TIGR00236 wecB UDP-N-acetylglu 98.8 1.8E-07 3.8E-12 90.0 15.2 138 176-341 198-344 (365)
47 PLN02871 UDP-sulfoquinovose:DA 98.7 5.8E-06 1.3E-10 82.2 24.7 140 177-341 264-414 (465)
48 PRK05749 3-deoxy-D-manno-octul 98.7 5.2E-06 1.1E-10 81.5 23.7 69 246-325 314-387 (425)
49 cd03801 GT1_YqgM_like This fam 98.7 1.3E-05 2.7E-10 75.1 23.7 278 8-361 74-372 (374)
50 cd03798 GT1_wlbH_like This fam 98.6 1.6E-05 3.5E-10 74.7 24.1 275 7-363 79-375 (377)
51 PRK01021 lpxB lipid-A-disaccha 98.6 4.2E-06 9.1E-11 83.6 20.0 205 127-348 368-592 (608)
52 cd03817 GT1_UGDG_like This fam 98.6 1.7E-05 3.7E-10 74.9 22.8 146 175-344 201-360 (374)
53 PF02684 LpxB: Lipid-A-disacch 98.6 6.9E-06 1.5E-10 78.5 19.6 203 127-348 140-361 (373)
54 cd03823 GT1_ExpE7_like This fa 98.6 4E-05 8.7E-10 72.1 24.2 130 175-325 190-328 (359)
55 cd03820 GT1_amsD_like This fam 98.5 1.5E-05 3.3E-10 74.3 20.7 195 114-346 131-334 (348)
56 cd03786 GT1_UDP-GlcNAc_2-Epime 98.5 2.8E-06 6.1E-11 81.3 15.0 130 174-325 197-336 (363)
57 cd05844 GT1_like_7 Glycosyltra 98.5 1.3E-05 2.8E-10 76.5 19.0 79 234-325 244-335 (367)
58 cd04962 GT1_like_5 This family 98.5 6.6E-05 1.4E-09 71.7 23.7 112 235-363 253-369 (371)
59 cd03800 GT1_Sucrose_synthase T 98.4 0.00011 2.5E-09 70.7 24.0 79 234-325 282-367 (398)
60 cd03822 GT1_ecORF704_like This 98.4 0.00031 6.8E-09 66.3 26.4 78 234-325 246-333 (366)
61 cd03808 GT1_cap1E_like This fa 98.4 0.00013 2.8E-09 68.2 22.9 133 175-325 187-328 (359)
62 PF02350 Epimerase_2: UDP-N-ac 98.3 8E-07 1.7E-11 84.7 6.5 140 173-340 178-327 (346)
63 KOG3349 Predicted glycosyltran 98.3 4.4E-06 9.5E-11 67.7 9.0 121 176-305 4-135 (170)
64 COG0763 LpxB Lipid A disacchar 98.3 5.3E-05 1.2E-09 71.3 16.8 220 127-363 143-380 (381)
65 cd03795 GT1_like_4 This family 98.2 0.00017 3.6E-09 68.3 20.2 128 176-325 191-331 (357)
66 cd03811 GT1_WabH_like This fam 98.2 0.0003 6.5E-09 65.5 21.4 132 175-325 188-331 (353)
67 cd03819 GT1_WavL_like This fam 98.2 0.00072 1.6E-08 64.0 24.0 153 175-343 184-347 (355)
68 COG1519 KdtA 3-deoxy-D-manno-o 98.2 0.00049 1.1E-08 65.6 22.1 59 257-325 327-385 (419)
69 TIGR03449 mycothiol_MshA UDP-N 98.2 0.00069 1.5E-08 65.9 23.9 94 234-341 282-382 (405)
70 cd03825 GT1_wcfI_like This fam 98.2 0.0015 3.3E-08 61.9 24.9 111 235-362 244-362 (365)
71 cd03799 GT1_amsK_like This is 98.1 0.00037 8.1E-09 65.8 20.2 79 234-325 235-326 (355)
72 cd03818 GT1_ExpC_like This fam 98.1 0.00087 1.9E-08 65.1 23.1 81 234-325 280-365 (396)
73 cd03804 GT1_wbaZ_like This fam 98.1 0.00011 2.3E-09 70.0 16.3 125 178-325 197-325 (351)
74 PF04007 DUF354: Protein of un 98.1 0.00049 1.1E-08 65.0 19.3 127 174-325 178-309 (335)
75 TIGR02149 glgA_Coryne glycogen 98.1 0.0021 4.6E-08 61.9 24.5 135 177-325 202-351 (388)
76 cd03821 GT1_Bme6_like This fam 98.1 0.0014 3.1E-08 61.6 22.6 77 234-325 261-344 (375)
77 cd04949 GT1_gtfA_like This fam 98.0 0.00049 1.1E-08 66.0 18.6 99 234-343 260-361 (372)
78 PRK09814 beta-1,6-galactofuran 98.0 0.0029 6.2E-08 60.1 23.4 109 235-360 207-331 (333)
79 cd03807 GT1_WbnK_like This fam 98.0 0.0025 5.4E-08 59.7 22.9 107 235-360 251-362 (365)
80 TIGR02472 sucr_P_syn_N sucrose 98.0 0.0033 7.1E-08 62.1 24.2 79 234-325 316-405 (439)
81 TIGR03568 NeuC_NnaA UDP-N-acet 98.0 0.00035 7.6E-09 67.2 16.6 131 175-325 201-338 (365)
82 COG3980 spsG Spore coat polysa 98.0 7.1E-05 1.5E-09 67.3 10.8 149 175-346 158-308 (318)
83 TIGR03087 stp1 sugar transfera 97.9 0.0036 7.9E-08 60.8 22.6 78 233-325 278-361 (397)
84 cd03796 GT1_PIG-A_like This fa 97.9 0.0025 5.4E-08 61.9 21.5 77 234-325 249-332 (398)
85 PRK15484 lipopolysaccharide 1, 97.9 0.00071 1.5E-08 65.5 17.2 114 234-364 256-377 (380)
86 PRK15179 Vi polysaccharide bio 97.9 0.0026 5.6E-08 66.0 22.0 112 234-360 573-689 (694)
87 PF00534 Glycos_transf_1: Glyc 97.9 0.00025 5.3E-09 60.2 12.2 88 234-339 72-166 (172)
88 cd03794 GT1_wbuB_like This fam 97.9 0.0009 1.9E-08 63.3 17.1 129 175-325 219-364 (394)
89 cd03816 GT1_ALG1_like This fam 97.8 0.0086 1.9E-07 58.7 22.5 93 235-342 294-399 (415)
90 TIGR02468 sucrsPsyn_pln sucros 97.8 0.0091 2E-07 63.9 23.8 81 234-325 547-636 (1050)
91 COG5017 Uncharacterized conser 97.7 0.00065 1.4E-08 54.3 11.2 111 178-306 2-125 (161)
92 PRK15427 colanic acid biosynth 97.7 0.00096 2.1E-08 65.2 14.6 113 234-363 278-404 (406)
93 cd03792 GT1_Trehalose_phosphor 97.7 0.026 5.6E-07 54.2 23.8 110 234-363 251-370 (372)
94 cd04946 GT1_AmsK_like This fam 97.7 0.00097 2.1E-08 65.2 13.8 82 234-325 288-376 (407)
95 TIGR02918 accessory Sec system 97.6 0.02 4.3E-07 57.5 22.6 117 234-362 375-497 (500)
96 cd03809 GT1_mtfB_like This fam 97.6 0.0028 6.1E-08 59.7 15.8 96 233-346 251-351 (365)
97 cd04951 GT1_WbdM_like This fam 97.6 0.0011 2.4E-08 62.7 12.6 108 234-360 244-356 (360)
98 cd04950 GT1_like_1 Glycosyltra 97.5 0.0049 1.1E-07 59.4 15.9 123 177-325 206-339 (373)
99 TIGR03088 stp2 sugar transfera 97.5 0.003 6.5E-08 60.6 14.1 111 235-362 255-370 (374)
100 cd03806 GT1_ALG11_like This fa 97.5 0.011 2.5E-07 57.9 18.3 79 234-326 304-392 (419)
101 cd03812 GT1_CapH_like This fam 97.4 0.025 5.4E-07 53.4 19.3 128 175-325 191-330 (358)
102 PRK09922 UDP-D-galactose:(gluc 97.4 0.0026 5.7E-08 60.9 12.6 128 177-326 181-324 (359)
103 PF13844 Glyco_transf_41: Glyc 97.4 0.0017 3.6E-08 63.7 11.0 139 174-325 283-429 (468)
104 PRK10307 putative glycosyl tra 97.3 0.0093 2E-07 58.2 15.8 114 235-363 284-406 (412)
105 COG0381 WecB UDP-N-acetylgluco 97.3 0.034 7.3E-07 52.9 18.0 145 175-348 204-358 (383)
106 cd03802 GT1_AviGT4_like This f 97.2 0.031 6.8E-07 52.2 18.2 128 178-325 173-307 (335)
107 PLN02949 transferase, transfer 97.2 0.068 1.5E-06 53.1 21.0 110 234-361 334-453 (463)
108 PLN02501 digalactosyldiacylgly 97.2 0.043 9.3E-07 56.3 18.7 74 236-325 602-680 (794)
109 PF13692 Glyco_trans_1_4: Glyc 97.1 0.0019 4.2E-08 52.2 7.1 79 234-325 52-134 (135)
110 cd04955 GT1_like_6 This family 97.0 0.044 9.5E-07 51.8 17.1 75 234-325 247-329 (363)
111 PLN02275 transferase, transfer 97.0 0.049 1.1E-06 52.5 17.2 75 235-324 286-371 (371)
112 cd03805 GT1_ALG2_like This fam 97.0 0.015 3.3E-07 56.0 13.7 92 234-340 279-377 (392)
113 cd03813 GT1_like_3 This family 97.0 0.02 4.4E-07 57.1 14.8 80 234-325 353-441 (475)
114 TIGR02470 sucr_synth sucrose s 97.0 0.2 4.3E-06 52.7 22.0 79 235-324 619-707 (784)
115 PLN00142 sucrose synthase 96.9 0.17 3.8E-06 53.2 21.1 60 252-324 667-730 (815)
116 PLN02846 digalactosyldiacylgly 96.8 0.33 7.2E-06 48.1 21.1 71 239-325 288-362 (462)
117 COG3914 Spy Predicted O-linked 96.8 0.02 4.3E-07 56.7 12.1 133 173-321 427-573 (620)
118 PRK10017 colanic acid biosynth 96.4 0.1 2.2E-06 51.2 14.5 181 165-362 224-422 (426)
119 PHA01633 putative glycosyl tra 96.1 0.26 5.6E-06 46.8 15.0 82 235-325 201-306 (335)
120 PF06722 DUF1205: Protein of u 95.7 0.016 3.5E-07 44.4 4.1 62 163-226 28-94 (97)
121 cd03791 GT1_Glycogen_synthase_ 95.5 0.31 6.6E-06 48.5 13.7 134 176-325 296-441 (476)
122 KOG4626 O-linked N-acetylgluco 95.5 0.12 2.6E-06 51.8 10.2 135 174-323 757-902 (966)
123 PHA01630 putative group 1 glyc 95.0 1.2 2.7E-05 42.1 15.5 110 242-363 197-329 (331)
124 PRK14098 glycogen synthase; Pr 95.0 0.58 1.3E-05 46.9 13.9 130 177-324 308-449 (489)
125 PRK15490 Vi polysaccharide bio 94.8 0.6 1.3E-05 47.2 13.0 65 234-305 454-523 (578)
126 TIGR02095 glgA glycogen/starch 94.6 0.83 1.8E-05 45.5 13.8 133 177-325 292-436 (473)
127 PRK10125 putative glycosyl tra 94.4 0.98 2.1E-05 44.1 13.6 100 193-321 258-366 (405)
128 PRK00654 glgA glycogen synthas 94.2 1.5 3.2E-05 43.7 14.7 134 176-325 282-427 (466)
129 PF13524 Glyco_trans_1_2: Glyc 94.2 0.45 9.7E-06 35.6 8.6 81 260-359 9-91 (92)
130 TIGR02193 heptsyl_trn_I lipopo 93.4 0.55 1.2E-05 44.0 9.6 143 167-324 171-319 (319)
131 TIGR02400 trehalose_OtsA alpha 92.6 4.8 0.0001 40.0 15.1 104 240-363 341-455 (456)
132 PLN02316 synthase/transferase 91.7 6.9 0.00015 42.7 15.8 82 235-325 900-997 (1036)
133 cd01635 Glycosyltransferase_GT 90.4 0.71 1.5E-05 39.8 6.1 48 234-283 160-215 (229)
134 PF06258 Mito_fiss_Elm1: Mitoc 90.3 10 0.00022 35.6 14.0 169 117-305 96-283 (311)
135 cd03788 GT1_TPS Trehalose-6-Ph 90.3 4.3 9.4E-05 40.3 12.2 104 239-362 345-459 (460)
136 PLN03063 alpha,alpha-trehalose 90.0 4.5 9.7E-05 43.2 12.5 99 247-364 371-477 (797)
137 TIGR03713 acc_sec_asp1 accesso 89.2 1 2.2E-05 45.5 6.7 73 235-325 409-487 (519)
138 PLN02939 transferase, transfer 88.9 13 0.00027 40.2 14.7 83 234-325 836-930 (977)
139 COG4370 Uncharacterized protei 88.3 1.7 3.6E-05 40.2 6.8 80 245-339 305-387 (412)
140 COG0438 RfaG Glycosyltransfera 88.3 19 0.00041 32.5 15.1 79 234-325 256-341 (381)
141 COG1817 Uncharacterized protei 87.5 25 0.00054 32.9 15.2 42 10-51 75-116 (346)
142 PRK06718 precorrin-2 dehydroge 86.7 12 0.00025 32.8 11.1 153 175-352 11-169 (202)
143 TIGR01470 cysG_Nterm siroheme 86.5 17 0.00037 31.8 12.1 149 175-348 10-165 (205)
144 PF07429 Glyco_transf_56: 4-al 86.5 5.8 0.00013 37.5 9.4 137 175-325 183-332 (360)
145 cd03789 GT1_LPS_heptosyltransf 86.1 2.5 5.4E-05 38.8 6.9 96 175-279 121-223 (279)
146 TIGR02201 heptsyl_trn_III lipo 84.3 4.9 0.00011 38.1 8.3 99 174-279 180-285 (344)
147 PF00731 AIRC: AIR carboxylase 83.5 20 0.00044 29.7 10.4 140 177-347 2-148 (150)
148 TIGR02919 accessory Sec system 82.4 9.4 0.0002 37.7 9.5 93 235-345 328-426 (438)
149 PRK14099 glycogen synthase; Pr 82.3 23 0.0005 35.5 12.4 79 238-325 354-446 (485)
150 PF05159 Capsule_synth: Capsul 81.5 11 0.00024 34.3 9.2 82 192-281 141-226 (269)
151 PRK10422 lipopolysaccharide co 80.0 9.7 0.00021 36.3 8.6 98 175-279 183-287 (352)
152 PF01075 Glyco_transf_9: Glyco 79.2 3.9 8.5E-05 36.6 5.3 99 174-279 104-208 (247)
153 TIGR02195 heptsyl_trn_II lipop 78.3 12 0.00026 35.2 8.5 96 174-279 173-276 (334)
154 PRK02797 4-alpha-L-fucosyltran 78.2 13 0.00028 34.8 8.2 134 177-324 146-292 (322)
155 TIGR02398 gluc_glyc_Psyn gluco 77.2 45 0.00097 33.5 12.4 111 237-367 364-485 (487)
156 KOG0853 Glycosyltransferase [C 76.2 11 0.00025 37.4 7.8 66 260-340 377-442 (495)
157 PRK05562 precorrin-2 dehydroge 75.9 42 0.00091 29.9 10.6 149 175-348 26-180 (223)
158 PRK10964 ADP-heptose:LPS hepto 74.6 7.5 0.00016 36.5 6.0 132 175-325 178-321 (322)
159 PRK10916 ADP-heptose:LPS hepto 74.5 17 0.00036 34.6 8.4 97 174-279 179-286 (348)
160 cd03793 GT1_Glycogen_synthase_ 73.7 15 0.00033 37.4 8.0 80 245-325 468-551 (590)
161 KOG2941 Beta-1,4-mannosyltrans 71.1 99 0.0021 29.6 12.5 146 174-341 253-423 (444)
162 PRK14501 putative bifunctional 70.5 64 0.0014 34.2 12.4 112 238-365 345-463 (726)
163 PF03033 Glyco_transf_28: Glyc 69.5 3.3 7.2E-05 33.3 2.1 33 19-51 100-133 (139)
164 COG0052 RpsB Ribosomal protein 68.9 4.8 0.0001 36.1 3.0 32 20-51 157-191 (252)
165 PF02826 2-Hacid_dh_C: D-isome 68.1 21 0.00046 30.3 6.8 104 175-322 37-143 (178)
166 COG3660 Predicted nucleoside-d 67.1 1E+02 0.0022 28.3 10.8 96 177-279 164-271 (329)
167 PF06925 MGDG_synth: Monogalac 66.4 9.9 0.00021 32.0 4.4 42 7-48 77-125 (169)
168 PF04464 Glyphos_transf: CDP-G 65.4 15 0.00032 35.2 6.0 97 235-347 252-353 (369)
169 PRK12342 hypothetical protein; 63.0 14 0.0003 33.7 4.8 40 9-48 99-145 (254)
170 PLN03064 alpha,alpha-trehalose 62.2 1.4E+02 0.0031 32.5 12.9 107 242-364 447-561 (934)
171 PRK09219 xanthine phosphoribos 61.6 13 0.00028 32.2 4.3 42 6-47 37-81 (189)
172 COG0859 RfaF ADP-heptose:LPS h 61.5 21 0.00046 33.7 6.2 94 175-279 175-276 (334)
173 COG0503 Apt Adenine/guanine ph 61.1 19 0.00041 30.8 5.2 37 10-46 44-83 (179)
174 PRK06487 glycerate dehydrogena 60.9 38 0.00083 31.8 7.7 101 175-322 149-249 (317)
175 COG0041 PurE Phosphoribosylcar 60.6 98 0.0021 25.7 12.2 140 177-347 4-150 (162)
176 PRK04940 hypothetical protein; 60.2 14 0.00031 31.6 4.2 31 19-49 60-92 (180)
177 KOG1344 Predicted histone deac 59.6 26 0.00056 31.2 5.6 48 2-49 231-301 (324)
178 PF06506 PrpR_N: Propionate ca 59.2 8.7 0.00019 32.7 2.8 70 250-325 31-123 (176)
179 PRK10637 cysG siroheme synthas 59.1 1.5E+02 0.0032 29.5 11.8 150 175-348 13-168 (457)
180 PF07355 GRDB: Glycine/sarcosi 58.7 21 0.00045 33.9 5.3 43 4-46 65-118 (349)
181 cd07039 TPP_PYR_POX Pyrimidine 58.5 56 0.0012 27.4 7.6 27 254-280 64-96 (164)
182 PRK06932 glycerate dehydrogena 58.3 45 0.00098 31.3 7.7 101 175-321 148-248 (314)
183 PRK03359 putative electron tra 57.8 16 0.00036 33.2 4.4 40 9-48 102-148 (256)
184 PRK08410 2-hydroxyacid dehydro 57.8 54 0.0012 30.7 8.1 101 175-322 146-248 (311)
185 PLN02293 adenine phosphoribosy 57.6 20 0.00043 31.0 4.7 42 4-45 47-91 (187)
186 PRK12446 undecaprenyldiphospho 55.5 20 0.00044 34.2 4.9 98 176-280 3-121 (352)
187 PF05728 UPF0227: Uncharacteri 55.5 18 0.0004 31.2 4.2 45 7-51 45-93 (187)
188 COG4394 Uncharacterized protei 54.4 64 0.0014 29.8 7.4 40 236-278 239-281 (370)
189 PRK15438 erythronate-4-phospha 53.1 69 0.0015 31.0 8.1 61 175-263 117-177 (378)
190 COG2159 Predicted metal-depend 53.0 1.9E+02 0.0042 26.8 15.2 108 146-270 98-211 (293)
191 COG1052 LdhA Lactate dehydroge 52.8 62 0.0013 30.6 7.6 104 175-322 147-252 (324)
192 cd01981 Pchlide_reductase_B Pc 52.0 25 0.00054 34.6 5.1 37 9-47 360-396 (430)
193 PF10093 DUF2331: Uncharacteri 51.5 1.5E+02 0.0032 28.7 9.8 92 187-281 191-290 (374)
194 TIGR01917 gly_red_sel_B glycin 51.4 31 0.00066 33.6 5.3 43 4-46 61-114 (431)
195 TIGR01918 various_sel_PB selen 51.1 31 0.00068 33.6 5.3 43 4-46 61-114 (431)
196 PLN02470 acetolactate synthase 51.0 17 0.00038 37.3 3.9 29 252-280 75-109 (585)
197 TIGR01744 XPRTase xanthine pho 50.7 25 0.00055 30.4 4.3 41 6-46 37-80 (191)
198 PRK07710 acetolactate synthase 50.0 29 0.00062 35.6 5.3 28 253-280 78-111 (571)
199 PRK15469 ghrA bifunctional gly 49.8 1.4E+02 0.003 28.0 9.4 105 175-322 137-242 (312)
200 cd01840 SGNH_hydrolase_yrhL_li 49.7 68 0.0015 26.1 6.7 38 175-213 51-88 (150)
201 CHL00076 chlB photochlorophyll 49.3 29 0.00063 35.1 5.1 37 8-46 363-399 (513)
202 PRK07313 phosphopantothenoylcy 48.8 1.7E+02 0.0037 25.0 11.0 52 273-325 113-179 (182)
203 PRK07574 formate dehydrogenase 48.7 79 0.0017 30.7 7.8 70 175-267 193-262 (385)
204 PF10820 DUF2543: Protein of u 48.4 73 0.0016 22.5 5.3 46 314-366 34-79 (81)
205 PRK12311 rpsB 30S ribosomal pr 46.8 20 0.00043 33.9 3.2 33 19-51 152-187 (326)
206 TIGR01743 purR_Bsub pur operon 46.3 29 0.00062 31.8 4.1 41 7-47 116-159 (268)
207 PRK02910 light-independent pro 46.2 34 0.00074 34.6 5.1 36 9-46 352-387 (519)
208 PRK09213 pur operon repressor; 45.8 29 0.00063 31.8 4.1 43 5-47 116-161 (271)
209 TIGR01012 Sa_S2_E_A ribosomal 45.7 26 0.00057 30.5 3.6 33 19-51 108-143 (196)
210 COG0299 PurN Folate-dependent 45.7 1.7E+02 0.0037 25.5 8.4 121 189-343 63-186 (200)
211 cd06330 PBP1_Arsenic_SBP_like 45.6 2.5E+02 0.0055 26.0 11.5 37 10-46 58-98 (346)
212 cd01141 TroA_d Periplasmic bin 45.5 34 0.00075 28.9 4.4 37 9-46 60-99 (186)
213 PRK04885 ppnK inorganic polyph 45.1 29 0.00063 31.7 4.0 52 251-325 35-92 (265)
214 TIGR01278 DPOR_BchB light-inde 45.0 33 0.00071 34.7 4.7 37 9-47 354-390 (511)
215 PLN02928 oxidoreductase family 44.9 89 0.0019 29.8 7.4 118 175-321 160-277 (347)
216 PRK04020 rps2P 30S ribosomal p 44.6 25 0.00055 30.8 3.3 33 19-51 114-149 (204)
217 PRK02155 ppnK NAD(+)/NADH kina 44.2 37 0.00079 31.6 4.6 53 250-325 62-118 (291)
218 PRK06456 acetolactate synthase 43.4 44 0.00096 34.2 5.5 28 253-280 68-101 (572)
219 COG1737 RpiR Transcriptional r 43.1 80 0.0017 29.0 6.7 88 165-284 123-215 (281)
220 TIGR00725 conserved hypothetic 43.0 1E+02 0.0022 25.7 6.7 99 162-281 20-123 (159)
221 PRK13010 purU formyltetrahydro 42.6 2.3E+02 0.0049 26.3 9.5 114 195-342 160-275 (289)
222 PRK06436 glycerate dehydrogena 42.5 1.5E+02 0.0034 27.6 8.5 63 175-265 123-185 (303)
223 PRK00257 erythronate-4-phospha 42.2 1.3E+02 0.0029 29.1 8.2 62 175-264 117-178 (381)
224 PRK13011 formyltetrahydrofolat 41.7 2.8E+02 0.0061 25.6 10.0 114 196-343 157-272 (286)
225 PRK13810 orotate phosphoribosy 41.2 41 0.00088 29.0 4.1 42 5-46 59-103 (187)
226 PRK15409 bifunctional glyoxyla 41.2 1.1E+02 0.0024 28.9 7.3 106 175-322 146-252 (323)
227 COG0801 FolK 7,8-dihydro-6-hyd 41.1 61 0.0013 27.2 4.9 29 177-205 3-31 (160)
228 cd01715 ETF_alpha The electron 40.9 55 0.0012 27.4 4.8 42 7-48 71-116 (168)
229 COG3140 Uncharacterized protei 40.8 83 0.0018 21.1 4.4 33 334-366 13-45 (60)
230 cd07035 TPP_PYR_POX_like Pyrim 40.8 1.7E+02 0.0038 23.7 7.8 28 254-281 60-93 (155)
231 PRK00039 ruvC Holliday junctio 40.7 58 0.0013 27.4 4.9 48 4-51 46-109 (164)
232 PRK14077 pnk inorganic polypho 40.4 39 0.00084 31.3 4.1 55 248-325 61-119 (287)
233 cd01965 Nitrogenase_MoFe_beta_ 40.1 46 0.001 32.7 4.9 36 9-46 361-396 (428)
234 TIGR01162 purE phosphoribosyla 40.0 2.2E+02 0.0048 23.8 12.3 134 180-347 3-146 (156)
235 cd01976 Nitrogenase_MoFe_alpha 39.9 40 0.00087 33.1 4.4 37 8-46 358-394 (421)
236 COG0299 PurN Folate-dependent 39.5 40 0.00086 29.3 3.7 29 19-47 29-58 (200)
237 PRK06276 acetolactate synthase 38.8 66 0.0014 33.0 5.9 27 254-280 64-96 (586)
238 PRK08322 acetolactate synthase 38.7 1E+02 0.0022 31.4 7.2 28 253-280 63-96 (547)
239 KOG0069 Glyoxylate/hydroxypyru 38.7 2.6E+02 0.0056 26.6 9.3 106 174-322 162-269 (336)
240 cd03466 Nitrogenase_NifN_2 Nit 38.4 52 0.0011 32.4 4.9 35 9-45 362-396 (429)
241 PLN03139 formate dehydrogenase 38.2 1.6E+02 0.0034 28.7 8.0 69 174-265 199-267 (386)
242 PRK08673 3-deoxy-7-phosphohept 38.0 3.6E+02 0.0077 25.7 10.2 33 272-305 261-299 (335)
243 cd07025 Peptidase_S66 LD-Carbo 37.6 55 0.0012 30.2 4.6 73 188-281 46-120 (282)
244 PLN02948 phosphoribosylaminoim 37.1 4.8E+02 0.011 26.8 12.4 143 175-347 410-558 (577)
245 PRK06270 homoserine dehydrogen 37.1 2.1E+02 0.0046 27.1 8.7 59 244-303 80-150 (341)
246 PRK07525 sulfoacetaldehyde ace 36.9 1.1E+02 0.0023 31.5 7.1 28 253-280 68-101 (588)
247 cd01425 RPS2 Ribosomal protein 36.7 42 0.00091 29.0 3.5 31 19-49 127-160 (193)
248 PF06180 CbiK: Cobalt chelatas 36.7 48 0.001 30.3 4.0 39 176-214 2-43 (262)
249 PHA02754 hypothetical protein; 36.4 67 0.0014 21.8 3.5 19 331-349 13-31 (67)
250 PF04909 Amidohydro_2: Amidohy 36.3 3E+02 0.0065 24.3 9.4 148 142-306 68-232 (273)
251 PRK12560 adenine phosphoribosy 36.3 55 0.0012 28.2 4.2 39 7-46 40-81 (187)
252 cd01147 HemV-2 Metal binding p 36.0 59 0.0013 29.0 4.6 38 10-48 66-107 (262)
253 cd01714 ETF_beta The electron 35.9 57 0.0012 28.4 4.3 39 7-45 96-141 (202)
254 TIGR01285 nifN nitrogenase mol 35.6 49 0.0011 32.6 4.2 35 9-45 363-397 (432)
255 PRK08558 adenine phosphoribosy 35.6 46 0.001 29.9 3.7 36 10-45 102-140 (238)
256 COG0111 SerA Phosphoglycerate 35.2 1.9E+02 0.0041 27.4 7.9 105 175-322 143-249 (324)
257 PF05225 HTH_psq: helix-turn-h 35.2 44 0.00096 21.4 2.6 26 312-341 1-26 (45)
258 PF13477 Glyco_trans_4_2: Glyc 35.1 77 0.0017 25.0 4.7 38 10-47 65-107 (139)
259 cd07038 TPP_PYR_PDC_IPDC_like 34.7 62 0.0013 27.0 4.1 27 254-280 60-92 (162)
260 TIGR00173 menD 2-succinyl-5-en 34.5 2.5E+02 0.0054 27.5 9.0 26 254-279 64-95 (432)
261 PRK04539 ppnK inorganic polyph 34.2 50 0.0011 30.8 3.8 55 248-325 65-123 (296)
262 PRK02649 ppnK inorganic polyph 34.2 44 0.00094 31.3 3.4 53 250-325 67-123 (305)
263 PRK05299 rpsB 30S ribosomal pr 34.1 69 0.0015 29.2 4.6 33 19-51 157-192 (258)
264 PF12689 Acid_PPase: Acid Phos 33.9 1.3E+02 0.0028 25.5 5.9 47 271-322 119-165 (169)
265 PF01012 ETF: Electron transfe 33.9 37 0.0008 28.3 2.7 42 6-47 77-122 (164)
266 PRK01911 ppnK inorganic polyph 33.8 55 0.0012 30.4 4.0 55 248-325 61-119 (292)
267 PF02571 CbiJ: Precorrin-6x re 33.7 68 0.0015 29.0 4.5 41 8-49 55-103 (249)
268 cd01974 Nitrogenase_MoFe_beta 33.7 81 0.0018 31.1 5.4 37 8-46 366-402 (435)
269 TIGR00655 PurU formyltetrahydr 33.7 2.4E+02 0.0052 26.0 8.1 116 194-343 150-267 (280)
270 cd01972 Nitrogenase_VnfE_like 33.5 59 0.0013 31.9 4.4 37 9-45 363-399 (426)
271 PRK13840 sucrose phosphorylase 33.4 2.2E+02 0.0048 28.6 8.4 131 163-320 270-414 (495)
272 PRK13243 glyoxylate reductase; 33.2 1.6E+02 0.0034 27.9 7.1 66 175-265 151-216 (333)
273 cd01424 MGS_CPS_II Methylglyox 33.2 64 0.0014 24.8 3.8 37 9-45 57-101 (110)
274 TIGR00143 hypF [NiFe] hydrogen 33.2 88 0.0019 33.1 5.8 50 5-55 402-453 (711)
275 PF10933 DUF2827: Protein of u 33.1 4E+02 0.0086 25.6 9.5 107 234-362 252-363 (364)
276 PRK05579 bifunctional phosphop 32.6 4.1E+02 0.009 25.9 10.0 139 176-325 8-182 (399)
277 PRK03378 ppnK inorganic polyph 32.4 53 0.0011 30.6 3.6 55 248-325 60-118 (292)
278 PRK14478 nitrogenase molybdenu 32.2 56 0.0012 32.7 4.0 34 9-44 383-416 (475)
279 PF05014 Nuc_deoxyrib_tr: Nucl 32.2 45 0.00098 25.8 2.7 36 247-282 57-98 (113)
280 TIGR00661 MJ1255 conserved hyp 32.0 62 0.0013 30.2 4.1 28 251-280 93-120 (321)
281 cd01985 ETF The electron trans 32.0 81 0.0018 26.7 4.5 41 7-47 79-123 (181)
282 cd01980 Chlide_reductase_Y Chl 32.0 79 0.0017 31.0 5.0 33 12-46 343-375 (416)
283 PRK06027 purU formyltetrahydro 31.7 2.8E+02 0.006 25.7 8.3 115 195-343 156-272 (286)
284 PRK05340 UDP-2,3-diacylglucosa 31.7 1.8E+02 0.004 25.8 7.0 61 192-264 58-118 (241)
285 PRK08057 cobalt-precorrin-6x r 31.6 92 0.002 28.2 5.0 40 8-48 54-101 (248)
286 cd03412 CbiK_N Anaerobic cobal 31.6 82 0.0018 25.1 4.2 38 176-213 2-41 (127)
287 TIGR00715 precor6x_red precorr 31.6 77 0.0017 28.8 4.5 40 8-47 54-100 (256)
288 PRK03372 ppnK inorganic polyph 31.5 63 0.0014 30.3 4.0 54 249-325 70-127 (306)
289 PRK13982 bifunctional SbtC-lik 31.3 5.4E+02 0.012 25.8 10.6 140 175-325 71-247 (475)
290 PRK02304 adenine phosphoribosy 31.3 72 0.0016 27.0 4.1 37 9-45 41-80 (175)
291 TIGR01011 rpsB_bact ribosomal 30.9 54 0.0012 29.2 3.3 33 19-51 155-190 (225)
292 PRK11790 D-3-phosphoglycerate 30.4 2.5E+02 0.0055 27.4 8.2 62 175-263 152-213 (409)
293 COG3150 Predicted esterase [Ge 30.3 46 0.001 28.3 2.5 45 5-49 43-91 (191)
294 cd06559 Endonuclease_V Endonuc 30.3 55 0.0012 28.8 3.2 38 9-46 81-128 (208)
295 CHL00067 rps2 ribosomal protei 30.3 56 0.0012 29.2 3.3 33 19-51 161-196 (230)
296 TIGR03609 S_layer_CsaB polysac 30.2 2.3E+02 0.0049 26.0 7.6 100 175-281 172-277 (298)
297 PRK14092 2-amino-4-hydroxy-6-h 30.1 1.2E+02 0.0026 25.6 5.0 30 173-202 5-34 (163)
298 TIGR01286 nifK nitrogenase mol 30.1 75 0.0016 32.2 4.5 37 8-46 426-462 (515)
299 cd01143 YvrC Periplasmic bindi 29.9 85 0.0018 26.5 4.4 38 9-47 51-90 (195)
300 PF02844 GARS_N: Phosphoribosy 29.9 98 0.0021 23.8 4.1 37 8-44 51-91 (100)
301 cd03784 GT1_Gtf_like This fami 29.8 2E+02 0.0044 27.4 7.5 36 177-214 3-38 (401)
302 COG0194 Gmk Guanylate kinase [ 29.8 3.6E+02 0.0078 23.4 7.9 88 242-347 62-156 (191)
303 cd01423 MGS_CPS_I_III Methylgl 29.7 56 0.0012 25.5 2.9 36 9-44 61-106 (116)
304 COG1154 Dxs Deoxyxylulose-5-ph 29.7 4.2E+02 0.0092 27.3 9.5 109 175-325 502-623 (627)
305 PF04413 Glycos_transf_N: 3-De 29.6 64 0.0014 27.7 3.5 40 8-47 84-126 (186)
306 PRK15411 rcsA colanic acid cap 29.3 1.2E+02 0.0026 26.3 5.3 39 10-48 38-86 (207)
307 PRK02231 ppnK inorganic polyph 28.8 80 0.0017 29.0 4.1 34 245-280 36-73 (272)
308 PF01497 Peripla_BP_2: Peripla 28.8 58 0.0013 28.5 3.2 40 9-49 51-93 (238)
309 PRK08155 acetolactate synthase 28.8 76 0.0016 32.4 4.4 28 253-280 76-109 (564)
310 TIGR01862 N2-ase-Ialpha nitrog 28.6 67 0.0015 31.8 3.9 35 9-45 377-411 (443)
311 PF00391 PEP-utilizers: PEP-ut 28.5 40 0.00087 24.4 1.8 32 16-47 27-61 (80)
312 COG2086 FixA Electron transfer 28.2 1.1E+02 0.0023 28.0 4.7 42 8-49 100-148 (260)
313 PRK12315 1-deoxy-D-xylulose-5- 28.1 5.1E+02 0.011 26.7 10.3 52 259-324 524-580 (581)
314 TIGR01284 alt_nitrog_alph nitr 28.1 62 0.0013 32.2 3.5 35 9-45 385-419 (457)
315 TIGR02015 BchY chlorophyllide 27.9 85 0.0018 30.9 4.4 32 13-46 349-380 (422)
316 COG3195 Uncharacterized protei 27.6 3.1E+02 0.0068 23.1 6.9 92 248-346 69-164 (176)
317 PF13579 Glyco_trans_4_4: Glyc 27.6 37 0.0008 27.0 1.6 40 8-47 60-104 (160)
318 cd07062 Peptidase_S66_mccF_lik 27.4 92 0.002 29.1 4.4 72 189-281 51-124 (308)
319 PF05693 Glycogen_syn: Glycoge 27.2 68 0.0015 33.0 3.6 96 244-345 462-566 (633)
320 PF08030 NAD_binding_6: Ferric 27.1 49 0.0011 27.0 2.3 39 176-214 3-46 (156)
321 PRK11269 glyoxylate carboligas 27.1 1.4E+02 0.0031 30.6 6.1 27 254-280 69-101 (591)
322 PF04493 Endonuclease_5: Endon 26.5 1.2E+02 0.0026 26.6 4.6 40 9-48 77-126 (206)
323 PRK00455 pyrE orotate phosphor 26.2 1.2E+02 0.0025 26.4 4.5 42 5-46 48-94 (202)
324 cd01977 Nitrogenase_VFe_alpha 26.2 72 0.0016 31.2 3.6 33 10-45 349-382 (415)
325 PRK14571 D-alanyl-alanine synt 26.1 3.6E+02 0.0077 24.8 8.1 34 178-211 3-39 (299)
326 TIGR01860 VNFD nitrogenase van 26.1 84 0.0018 31.3 4.0 32 10-43 388-419 (461)
327 PRK03501 ppnK inorganic polyph 25.6 82 0.0018 28.8 3.6 53 251-325 39-96 (264)
328 PRK01231 ppnK inorganic polyph 25.5 1E+02 0.0022 28.7 4.2 53 250-325 61-117 (295)
329 PRK05114 hypothetical protein; 25.2 2E+02 0.0044 19.6 4.4 31 334-364 13-43 (59)
330 PTZ00254 40S ribosomal protein 25.2 85 0.0018 28.4 3.5 33 19-51 118-153 (249)
331 PRK05858 hypothetical protein; 25.2 2.2E+02 0.0048 28.8 7.1 26 255-280 69-100 (542)
332 PF12641 Flavodoxin_3: Flavodo 25.2 1.9E+02 0.0041 24.2 5.4 51 145-200 41-92 (160)
333 cd03818 GT1_ExpC_like This fam 25.1 2.3E+02 0.0049 27.1 6.9 25 190-214 10-34 (396)
334 PLN02935 Bifunctional NADH kin 25.0 98 0.0021 31.1 4.2 53 250-325 261-317 (508)
335 TIGR01283 nifE nitrogenase mol 25.0 1.1E+02 0.0025 30.3 4.8 36 8-45 384-419 (456)
336 cd01968 Nitrogenase_NifE_I Nit 24.8 98 0.0021 30.2 4.2 35 9-45 346-380 (410)
337 TIGR00732 dprA DNA protecting 24.8 3.7E+02 0.0081 23.7 7.5 38 263-301 171-210 (220)
338 PRK14075 pnk inorganic polypho 24.6 89 0.0019 28.4 3.6 52 251-325 41-93 (256)
339 TIGR00228 ruvC crossover junct 24.5 1.3E+02 0.0029 25.1 4.3 47 4-50 42-104 (156)
340 TIGR01282 nifD nitrogenase mol 24.5 52 0.0011 32.8 2.3 35 8-44 393-427 (466)
341 PRK13809 orotate phosphoribosy 24.3 1.2E+02 0.0026 26.6 4.3 38 8-45 56-96 (206)
342 PF03701 UPF0181: Uncharacteri 24.3 2.2E+02 0.0047 18.8 4.3 32 334-365 13-44 (51)
343 PF02433 FixO: Cytochrome C ox 24.2 1.2E+02 0.0026 26.9 4.1 58 311-369 164-225 (226)
344 COG0496 SurE Predicted acid ph 24.2 1.2E+02 0.0026 27.5 4.2 40 10-49 74-127 (252)
345 TIGR01367 pyrE_Therm orotate p 24.1 1.4E+02 0.003 25.7 4.6 40 6-45 43-87 (187)
346 cd07037 TPP_PYR_MenD Pyrimidin 24.1 44 0.00095 28.1 1.4 27 254-280 61-93 (162)
347 TIGR01861 ANFD nitrogenase iro 24.0 95 0.0021 31.4 4.0 30 12-44 391-421 (513)
348 PRK08978 acetolactate synthase 24.0 1.1E+02 0.0023 31.1 4.5 27 254-280 64-96 (548)
349 cd01018 ZntC Metal binding pro 23.5 1.8E+02 0.0039 26.4 5.5 42 8-49 206-250 (266)
350 PF08660 Alg14: Oligosaccharid 22.7 1.2E+02 0.0027 25.6 3.9 32 17-48 90-130 (170)
351 COG3340 PepE Peptidase E [Amin 22.5 5.5E+02 0.012 22.8 8.5 47 163-210 22-68 (224)
352 TIGR01090 apt adenine phosphor 22.3 1.3E+02 0.0029 25.1 4.1 40 5-44 32-74 (169)
353 PRK01185 ppnK inorganic polyph 22.1 96 0.0021 28.5 3.3 52 251-325 52-104 (271)
354 PF02075 RuvC: Crossover junct 21.9 1.4E+02 0.003 24.6 4.0 48 4-51 43-106 (149)
355 cd01148 TroA_a Metal binding p 21.7 1E+02 0.0022 28.0 3.6 37 9-46 70-113 (284)
356 TIGR02720 pyruv_oxi_spxB pyruv 21.7 1.5E+02 0.0032 30.4 5.0 27 254-280 64-96 (575)
357 PRK12595 bifunctional 3-deoxy- 21.7 7.2E+02 0.016 23.8 10.2 126 183-325 124-250 (360)
358 PF02776 TPP_enzyme_N: Thiamin 21.6 60 0.0013 27.2 1.8 28 254-281 65-98 (172)
359 PRK08236 hypothetical protein; 21.5 1E+02 0.0022 27.1 3.3 29 20-48 154-183 (212)
360 cd03146 GAT1_Peptidase_E Type 21.4 5.4E+02 0.012 22.3 8.1 47 162-210 17-66 (212)
361 PF13167 GTP-bdg_N: GTP-bindin 21.4 2.1E+02 0.0045 21.7 4.5 36 8-43 46-84 (95)
362 PF03033 Glyco_transf_28: Glyc 21.4 1.8E+02 0.0039 22.8 4.6 35 177-213 1-35 (139)
363 TIGR00730 conserved hypothetic 21.4 4.6E+02 0.01 22.3 7.2 102 162-280 21-133 (178)
364 PRK02645 ppnK inorganic polyph 21.4 2E+02 0.0044 26.8 5.4 30 250-281 56-89 (305)
365 PRK07164 5'-methylthioadenosin 21.4 91 0.002 27.6 3.0 37 12-49 147-184 (218)
366 TIGR00147 lipid kinase, YegS/R 21.3 3.1E+02 0.0066 25.1 6.7 28 252-281 58-91 (293)
367 KOG0081 GTPase Rab27, small G 21.2 2.1E+02 0.0046 24.1 4.8 31 19-49 124-165 (219)
368 PRK13054 lipid kinase; Reviewe 21.1 3.6E+02 0.0077 24.9 7.1 68 190-281 17-92 (300)
369 COG2230 Cfa Cyclopropane fatty 21.0 76 0.0016 29.4 2.4 39 260-299 80-121 (283)
370 cd00529 RuvC_resolvase Hollida 20.9 2.4E+02 0.0051 23.3 5.2 24 4-27 44-67 (154)
371 PRK08617 acetolactate synthase 20.8 1.9E+02 0.0041 29.4 5.6 27 254-280 68-100 (552)
372 cd03416 CbiX_SirB_N Sirohydroc 20.7 2.9E+02 0.0064 20.5 5.4 34 177-210 2-37 (101)
373 PRK08266 hypothetical protein; 20.7 1.9E+02 0.0041 29.3 5.5 27 254-280 69-101 (542)
374 PF12363 DUF3647: Phage protei 20.7 1.5E+02 0.0033 23.1 3.8 63 288-358 49-111 (113)
375 cd00636 TroA-like Helical back 20.7 1.8E+02 0.004 22.4 4.5 39 9-48 52-92 (148)
376 KOG0832 Mitochondrial/chloropl 20.6 41 0.00089 29.9 0.5 38 14-51 168-208 (251)
377 COG3200 AroG 3-deoxy-D-arabino 20.5 3.6E+02 0.0077 25.8 6.6 51 162-214 296-351 (445)
378 COG2327 WcaK Polysaccharide py 20.4 1.9E+02 0.004 28.1 5.0 87 235-337 266-357 (385)
379 cd06533 Glyco_transf_WecG_TagA 20.4 3.7E+02 0.0079 22.6 6.4 99 107-214 33-134 (171)
380 PF12000 Glyco_trans_4_3: Gkyc 20.4 1.9E+02 0.0041 24.6 4.5 31 18-48 65-97 (171)
381 TIGR02638 lactal_redase lactal 20.2 1.9E+02 0.0041 27.8 5.2 11 272-282 129-139 (379)
382 PF00318 Ribosomal_S2: Ribosom 20.1 90 0.0019 27.4 2.6 33 19-51 143-178 (211)
383 cd08806 CARD_CARD14_CARMA2 Cas 20.0 2.5E+02 0.0054 20.9 4.4 36 321-363 37-75 (86)
No 1
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.8e-58 Score=450.42 Aligned_cols=360 Identities=33% Similarity=0.541 Sum_probs=284.3
Q ss_pred hHhhcHHHHHHHHhhcCCCEEEECC-CCChHHHHHHhCCCeEEEeCchHHHHHhhhchhhhhcCCCCCc--cCCCCCCCC
Q 017557 3 AMDLTEPAIEAIVRDIKPNIVFFDF-TYWLPSLARKLGIKSIAFVTVSPATVGYLLSPERKLRDKFLTE--ADLLQPPQG 79 (369)
Q Consensus 3 ~~~~~~~~l~~~l~~~~pD~vI~D~-~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 79 (369)
+.+.+.+++++++++.+++|||+|+ ++|+.++|+++|||++.|++++++.+..+.++........... ......+..
T Consensus 94 ~~~~~~~~~~~~l~~~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 173 (472)
T PLN02670 94 AFDLLEPPLTTFLETSKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLMEGGDLRSTAEDFTVVPPW 173 (472)
T ss_pred HHHHhHHHHHHHHHhCCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhhcccCCCccccccCCCCc
Confidence 4567889999999988999999999 9999999999999999999999988777654422211111111 111111122
Q ss_pred CCC-CccccCccccchhhhhcccCCC-chHHHHHHHHhhccCceeeeccccchhhhhhhhhhhhcCcceeEeCCCCCCC-
Q 017557 80 FPP-SKIKLRAHEARGLAAATVKDFG-GLSFMERLLLCLTECDAIGFKTCREIEGAYCDCVESQFEKRVILAGPVLPEP- 156 (369)
Q Consensus 80 ~p~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~- 156 (369)
+|. ..+.++..+++.+..... ... ....+.+....+.+++++++|||++||+.+++.++..++++++.|||++...
T Consensus 174 ~P~~~~~~~~~~dlp~~~~~~~-~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l~~l~~~~~~~v~~VGPl~~~~~ 252 (472)
T PLN02670 174 VPFESNIVFRYHEVTKYVEKTE-EDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWFDLLSDLYRKPIIPIGFLPPVIE 252 (472)
T ss_pred CCCCccccccHHHhhHHHhccC-ccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHHHHHHHhhCCCeEEEecCCcccc
Confidence 342 111234445665442111 121 2333344445567789999999999999999998876667899999997531
Q ss_pred C--C-CC----chhHHHhhhccCCCCceEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCC-CccccCCchhH
Q 017557 157 P--A-SV----LEEEFEMLFSSFKAKSLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGH-DTIESALPEGF 228 (369)
Q Consensus 157 ~--~-~~----~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~-~~~~~~lp~~~ 228 (369)
. . .. ..++|.+|||++++++||||||||...++.+++.+++.+|+.++++|||+++..... ......+|++|
T Consensus 253 ~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~lp~~f 332 (472)
T PLN02670 253 DDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETPFFWVLRNEPGTTQNALEMLPDGF 332 (472)
T ss_pred ccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCcccccchhhcCChHH
Confidence 1 1 10 125799999999889999999999999999999999999999999999999853211 10123689999
Q ss_pred HHHhcCCCeeEecccChHHhhcCCCccceeecCCCchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecCCC
Q 017557 229 EERVKGRGFVHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDED 308 (369)
Q Consensus 229 ~~~~~~~~~~v~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~ 308 (369)
.++++++++++.+|+||.+||+|+++++|||||||||++||+++|||||+||+++||+.||+++++. |+|+.+...+.+
T Consensus 333 ~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~-g~Gv~l~~~~~~ 411 (472)
T PLN02670 333 EERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNEQGLNTRLLHGK-KLGLEVPRDERD 411 (472)
T ss_pred HHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchhccHHHHHHHHHc-CeeEEeeccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999886 999999764334
Q ss_pred CccCHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcc
Q 017557 309 GLFTRDGVCKAVKAVMDDDSEVGKDARQNHAELREFLISPGLENSYVDGFVQELHSLA 366 (369)
Q Consensus 309 ~~~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~v~~l~~~~ 366 (369)
+.++.++|+++|+++|. ++++++||+||+++++.+++.+...+++++++++++++.
T Consensus 412 ~~~~~e~i~~av~~vm~--~~~g~~~r~~a~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 467 (472)
T PLN02670 412 GSFTSDSVAESVRLAMV--DDAGEEIRDKAKEMRNLFGDMDRNNRYVDELVHYLRENR 467 (472)
T ss_pred CcCcHHHHHHHHHHHhc--CcchHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHhc
Confidence 56899999999999997 445679999999999999999999999999999999875
No 2
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=4.2e-58 Score=446.47 Aligned_cols=346 Identities=49% Similarity=0.944 Sum_probs=279.6
Q ss_pred hHhhcHHHHHHHHhhcCCCEEEECCCCChHHHHHHhCCCeEEEeCchHHHHHhhhchhhhhcCCCCCccCCCCCCCCCCC
Q 017557 3 AMDLTEPAIEAIVRDIKPNIVFFDFTYWLPSLARKLGIKSIAFVTVSPATVGYLLSPERKLRDKFLTEADLLQPPQGFPP 82 (369)
Q Consensus 3 ~~~~~~~~l~~~l~~~~pD~vI~D~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 82 (369)
+++.+.+.+++++++.++||||+|++.|+..+|+++|||++.|++++++.+. +.+... .....+.+++|.
T Consensus 91 ~~~~~~~~l~~~L~~~~~~cVV~D~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~---------~~~~~~~pglp~ 160 (442)
T PLN02208 91 ALDLTRDQVEAAVRALRPDLIFFDFAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPG---------GKLGVPPPGYPS 160 (442)
T ss_pred HHHHHHHHHHHHHhhCCCeEEEECCcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCc---------cccCCCCCCCCC
Confidence 4667888999999988999999999889999999999999999999988654 333211 001112234443
Q ss_pred CccccCccccchhhhhcccCCC-chHHH-HHHHHhhccCceeeeccccchhhhhhhhhhhhcCcceeEeCCCCCCCC-CC
Q 017557 83 SKIKLRAHEARGLAAATVKDFG-GLSFM-ERLLLCLTECDAIGFKTCREIEGAYCDCVESQFEKRVILAGPVLPEPP-AS 159 (369)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~-~~ 159 (369)
....++..+++.+. ... .+..+ .++.....+++.+++|||.+||+.+++.+.+.++++++.|||++.... ..
T Consensus 161 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~~~v~~vGpl~~~~~~~~ 235 (442)
T PLN02208 161 SKVLFRENDAHALA-----TLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQYHKKVLLTGPMFPEPDTSK 235 (442)
T ss_pred cccccCHHHcCccc-----ccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhhcCCCEEEEeecccCcCCCC
Confidence 11123344444321 111 12222 233345667999999999999999999988877789999999987543 23
Q ss_pred CchhHHHhhhccCCCCceEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhcCCCeeE
Q 017557 160 VLEEEFEMLFSSFKAKSLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGRGFVH 239 (369)
Q Consensus 160 ~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v 239 (369)
.++++|.+|||.++++++|||||||...++.+++.+++.+++.++.+|+|+++...........+|++|.++++++|+++
T Consensus 236 ~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~~~~~~~~~~lp~~f~~r~~~~g~~v 315 (442)
T PLN02208 236 PLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPPRGSSTVQEGLPEGFEERVKGRGVVW 315 (442)
T ss_pred CCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCCCcccchhhhCCHHHHHHHhcCCcEe
Confidence 46789999999998899999999999999999999999999999999999998642111123468999999999999999
Q ss_pred ecccChHHhhcCCCccceeecCCCchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHH
Q 017557 240 GGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKA 319 (369)
Q Consensus 240 ~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~a 319 (369)
.+|+||.+||+|+++++|||||||||++||+++|||||+||+++||+.||+++++.||+|+.+...+ ++.+++++|+++
T Consensus 316 ~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~-~~~~~~~~l~~a 394 (442)
T PLN02208 316 GGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEVSREK-TGWFSKESLSNA 394 (442)
T ss_pred eccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEEecccc-CCcCcHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999888669999997643 346999999999
Q ss_pred HHHHhccCCcchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 017557 320 VKAVMDDDSEVGKDARQNHAELREFLISPGLENSYVDGFVQELHS 364 (369)
Q Consensus 320 i~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~v~~l~~ 364 (369)
|+++|++++|+++.+|++|+++++.+.+.|++.+++++||+++++
T Consensus 395 i~~~m~~~~e~g~~~r~~~~~~~~~~~~~gsS~~~l~~~v~~l~~ 439 (442)
T PLN02208 395 IKSVMDKDSDLGKLVRSNHTKLKEILVSPGLLTGYVDKFVEELQE 439 (442)
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 999997433568899999999999999889899999999999865
No 3
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=6.8e-58 Score=443.22 Aligned_cols=353 Identities=49% Similarity=0.936 Sum_probs=282.0
Q ss_pred hHhhcHHHHHHHHhhcCCCEEEECCCCChHHHHHHhCCCeEEEeCchHHHHHhhhchhhhhcCCCCCccCCCCCCCCCCC
Q 017557 3 AMDLTEPAIEAIVRDIKPNIVFFDFTYWLPSLARKLGIKSIAFVTVSPATVGYLLSPERKLRDKFLTEADLLQPPQGFPP 82 (369)
Q Consensus 3 ~~~~~~~~l~~~l~~~~pD~vI~D~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 82 (369)
+++.+.++++++|++.+|||||+|+++|+.++|+++|||++.|++++++.+.++..+. . ..+.+.+++|.
T Consensus 92 a~~~~~~~~~~~l~~~~~~~iV~D~~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~~~----~------~~~~~~pglp~ 161 (453)
T PLN02764 92 AMDLTRDQVEVVVRAVEPDLIFFDFAHWIPEVARDFGLKTVKYVVVSASTIASMLVPG----G------ELGVPPPGYPS 161 (453)
T ss_pred HHHHhHHHHHHHHHhCCCCEEEECCchhHHHHHHHhCCCEEEEEcHHHHHHHHHhccc----c------cCCCCCCCCCC
Confidence 5667889999999988899999999889999999999999999999998877765310 0 01112234442
Q ss_pred CccccCccccchhhhhcc-cCCC-chHHHHHHHHhhccCceeeeccccchhhhhhhhhhhhcCcceeEeCCCCCCCCC-C
Q 017557 83 SKIKLRAHEARGLAAATV-KDFG-GLSFMERLLLCLTECDAIGFKTCREIEGAYCDCVESQFEKRVILAGPVLPEPPA-S 159 (369)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~-~ 159 (369)
....++..+++.+..... .... ......++...+.+++.+++|||++||+.+++.++...+++++.|||++..... .
T Consensus 162 ~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~~~~~~~v~~VGPL~~~~~~~~ 241 (453)
T PLN02764 162 SKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIEKHCRKKVLLTGPVFPEPDKTR 241 (453)
T ss_pred CcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHHhhcCCcEEEeccCccCccccc
Confidence 111233444443321110 0111 123334444566789999999999999999998876545689999999754311 1
Q ss_pred CchhHHHhhhccCCCCceEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhcCCCeeE
Q 017557 160 VLEEEFEMLFSSFKAKSLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGRGFVH 239 (369)
Q Consensus 160 ~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v 239 (369)
..+++|.+|||++++++||||||||....+.+++.+++.+|+.++.+|+|+++......+....+|++|.++++++++++
T Consensus 242 ~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~~~~~~~~~~~lp~~f~~r~~grG~v~ 321 (453)
T PLN02764 242 ELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKPPRGSSTIQEALPEGFEERVKGRGVVW 321 (453)
T ss_pred cchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeCCCCCcchhhhCCcchHhhhccCCcEE
Confidence 23568999999999999999999999999999999999999999999999998532211123469999999999999999
Q ss_pred ecccChHHhhcCCCccceeecCCCchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHH
Q 017557 240 GGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKA 319 (369)
Q Consensus 240 ~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~a 319 (369)
.+|+||.+||+|+++++|||||||||++||+++|||||+||+++||+.||+++++.||+|+.+...+ .+.++.++|+++
T Consensus 322 ~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~~~~-~~~~~~e~i~~a 400 (453)
T PLN02764 322 GGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVAREE-TGWFSKESLRDA 400 (453)
T ss_pred eCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhceEEEecccc-CCccCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999987669999985421 134899999999
Q ss_pred HHHHhccCCcchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcc
Q 017557 320 VKAVMDDDSEVGKDARQNHAELREFLISPGLENSYVDGFVQELHSLA 366 (369)
Q Consensus 320 i~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~v~~l~~~~ 366 (369)
|+++|++++++++.+|++++++++.++++|++.+++++||+++.+..
T Consensus 401 v~~vm~~~~~~g~~~r~~a~~~~~~~~~~GSS~~~l~~lv~~~~~~~ 447 (453)
T PLN02764 401 INSVMKRDSEIGNLVKKNHTKWRETLASPGLLTGYVDNFIESLQDLV 447 (453)
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 99999742356788999999999999999999999999999998764
No 4
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=8.4e-57 Score=437.80 Aligned_cols=347 Identities=47% Similarity=0.908 Sum_probs=277.5
Q ss_pred hHhhcHHHHHHHHhhcCCCEEEECCCCChHHHHHHhCCCeEEEeCchHHHHHhhhchhhhhcCCCCCccCCCCCCCCCCC
Q 017557 3 AMDLTEPAIEAIVRDIKPNIVFFDFTYWLPSLARKLGIKSIAFVTVSPATVGYLLSPERKLRDKFLTEADLLQPPQGFPP 82 (369)
Q Consensus 3 ~~~~~~~~l~~~l~~~~pD~vI~D~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 82 (369)
+++.+.+.++++++..+|||||+|+++|+.++|+++|||++.|++++++.+.++.++.. . ...+++++|.
T Consensus 91 a~~~l~~~l~~~L~~~~p~cVV~D~~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~~--~--------~~~~~pg~p~ 160 (446)
T PLN00414 91 AMDLLRDQIEAKVRALKPDLIFFDFVHWVPEMAKEFGIKSVNYQIISAACVAMVLAPRA--E--------LGFPPPDYPL 160 (446)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEECCchhHHHHHHHhCCCEEEEecHHHHHHHHHhCcHh--h--------cCCCCCCCCC
Confidence 45678888888888888999999998899999999999999999999988877665321 0 0112234443
Q ss_pred CccccCccccc--hhhhhcccCCCchHHHHHHHHhhccCceeeeccccchhhhhhhhhhhhcCcceeEeCCCCCCCCC--
Q 017557 83 SKIKLRAHEAR--GLAAATVKDFGGLSFMERLLLCLTECDAIGFKTCREIEGAYCDCVESQFEKRVILAGPVLPEPPA-- 158 (369)
Q Consensus 83 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~-- 158 (369)
....++..+.+ .++ . . ....+.+....+.+++.+++|||++||+.+++.++..++++++.|||++.....
T Consensus 161 ~~~~~~~~~~~~~~~~---~-~--~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~v~~VGPl~~~~~~~~ 234 (446)
T PLN00414 161 SKVALRGHDANVCSLF---A-N--SHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQCQRKVLLTGPMLPEPQNKS 234 (446)
T ss_pred CcCcCchhhcccchhh---c-c--cHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHhcCCCeEEEcccCCCccccc
Confidence 11112222111 111 1 1 112334445667789999999999999999998877666689999999753311
Q ss_pred -CCchhHHHhhhccCCCCceEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhcCCCe
Q 017557 159 -SVLEEEFEMLFSSFKAKSLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGRGF 237 (369)
Q Consensus 159 -~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~ 237 (369)
...+++|.+|||++++++||||||||....+.+++.+++.+|+.++.+|+|+++......+....+|++|.++++++++
T Consensus 235 ~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~~~~~~~~~~lp~~f~~r~~~~g~ 314 (446)
T PLN00414 235 GKPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPPKGSSTVQEALPEGFEERVKGRGI 314 (446)
T ss_pred CcccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecCCCcccchhhCChhHHHHhcCCCe
Confidence 1124579999999999999999999999999999999999999999999999986321111234689999999999999
Q ss_pred eEecccChHHhhcCCCccceeecCCCchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecCCCCccCHHHHH
Q 017557 238 VHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVC 317 (369)
Q Consensus 238 ~v~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~ 317 (369)
++.+|+||.+||+|+++++|||||||||++||+++|||||+||+++||+.||+++++.||+|+.+...+ ++.+++++|+
T Consensus 315 vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~~~~~~~-~~~~~~~~i~ 393 (446)
T PLN00414 315 VWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSVKVQRED-SGWFSKESLR 393 (446)
T ss_pred EEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeEEEecccc-CCccCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999987679999997532 2468999999
Q ss_pred HHHHHHhccCCcchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcc
Q 017557 318 KAVKAVMDDDSEVGKDARQNHAELREFLISPGLENSYVDGFVQELHSLA 366 (369)
Q Consensus 318 ~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~v~~l~~~~ 366 (369)
++++++|.+++|+++.+|++|+++++.+.+.|++...+++||+++++.+
T Consensus 394 ~~v~~~m~~~~e~g~~~r~~a~~~~~~~~~~gg~ss~l~~~v~~~~~~~ 442 (446)
T PLN00414 394 DTVKSVMDKDSEIGNLVKRNHKKLKETLVSPGLLSGYADKFVEALENEV 442 (446)
T ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhc
Confidence 9999999743355788999999999999988886777999999997654
No 5
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=2e-56 Score=438.62 Aligned_cols=357 Identities=26% Similarity=0.437 Sum_probs=278.8
Q ss_pred hHhhcHHHHHHHHhhc--CCCEEEECC-CCChHHHHHHhCCCeEEEeCchHHHHHhhhchhhhhcCCC-CCccCCCCCCC
Q 017557 3 AMDLTEPAIEAIVRDI--KPNIVFFDF-TYWLPSLARKLGIKSIAFVTVSPATVGYLLSPERKLRDKF-LTEADLLQPPQ 78 (369)
Q Consensus 3 ~~~~~~~~l~~~l~~~--~pD~vI~D~-~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 78 (369)
+++.+.+++.+++++. +|+|||+|+ .+|+.++|+++|||++.|++++++.+..+.+......... ...........
T Consensus 96 a~~~~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (477)
T PLN02863 96 ALGELYAPLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREMPTKINPDDQNEILSFS 175 (477)
T ss_pred HHHHhHHHHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhcccccccccccccccccC
Confidence 5567888999999873 679999999 9999999999999999999999999888776543211110 00001111122
Q ss_pred CCCCCccccCccccchhhhhcccCCC-chHHHHHHHHhhccCceeeeccccchhhhhhhhhhhhcC-cceeEeCCCCCCC
Q 017557 79 GFPPSKIKLRAHEARGLAAATVKDFG-GLSFMERLLLCLTECDAIGFKTCREIEGAYCDCVESQFE-KRVILAGPVLPEP 156 (369)
Q Consensus 79 ~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~-~~~~~vGp~~~~~ 156 (369)
.+|+ ...++..+++.+++... ... ....+.+.......++++++|||++||+++++.++..++ ++++.|||+++..
T Consensus 176 ~iPg-~~~~~~~dlp~~~~~~~-~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~v~~IGPL~~~~ 253 (477)
T PLN02863 176 KIPN-CPKYPWWQISSLYRSYV-EGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKKELGHDRVWAVGPILPLS 253 (477)
T ss_pred CCCC-CCCcChHhCchhhhccC-ccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHhhcCCCCeEEeCCCcccc
Confidence 3454 12255555665443111 111 222333333345567889999999999999999887665 6899999997532
Q ss_pred C-C-------C--C-chhHHHhhhccCCCCceEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCc
Q 017557 157 P-A-------S--V-LEEEFEMLFSSFKAKSLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALP 225 (369)
Q Consensus 157 ~-~-------~--~-~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp 225 (369)
. . . . .+++|.+||++++++++|||||||....+.+++.+++.+|+.++++|||+++...........+|
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw~~~~~~~~~~~~~~lp 333 (477)
T PLN02863 254 GEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIWCVKEPVNEESDYSNIP 333 (477)
T ss_pred cccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEEEECCCcccccchhhCC
Confidence 1 0 0 0 24689999999988999999999999999999999999999999999999985422111124689
Q ss_pred hhHHHHhcCCCeeEecccChHHhhcCCCccceeecCCCchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeec
Q 017557 226 EGFEERVKGRGFVHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERG 305 (369)
Q Consensus 226 ~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~ 305 (369)
++|.++++++|+++.+|+||.++|+|+++++|||||||||++||+++|||+|+||+++||+.||+++++.||+|+.+..+
T Consensus 334 ~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~~~~~~ 413 (477)
T PLN02863 334 SGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQFVNASLLVDELKVAVRVCEG 413 (477)
T ss_pred HHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccccchhhHHHHHHhhceeEEeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998877999999643
Q ss_pred CCCCccCHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHhcc
Q 017557 306 DEDGLFTRDGVCKAVKAVMDDDSEVGKDARQNHAELREFLI----SPGLENSYVDGFVQELHSLA 366 (369)
Q Consensus 306 ~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~----~~~~~~~~~~~~v~~l~~~~ 366 (369)
. .+.++.+++.++|+++|.+ +++||+||+++++.++ ++|++.+++++||+++.+.+
T Consensus 414 ~-~~~~~~~~v~~~v~~~m~~----~~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~i~~~~ 473 (477)
T PLN02863 414 A-DTVPDSDELARVFMESVSE----NQVERERAKELRRAALDAIKERGSSVKDLDGFVKHVVELG 473 (477)
T ss_pred C-CCCcCHHHHHHHHHHHhhc----cHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHhc
Confidence 2 2457999999999999942 7899999999999955 45888999999999998764
No 6
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=9.2e-56 Score=431.88 Aligned_cols=354 Identities=22% Similarity=0.329 Sum_probs=274.6
Q ss_pred hHhhcHHHHHHHHhhc--CCCEEEECC-CCChHHHHHHhCCCeEEEeCchHHHHHhhhchhhhhcCCCCCccCCCCCCCC
Q 017557 3 AMDLTEPAIEAIVRDI--KPNIVFFDF-TYWLPSLARKLGIKSIAFVTVSPATVGYLLSPERKLRDKFLTEADLLQPPQG 79 (369)
Q Consensus 3 ~~~~~~~~l~~~l~~~--~pD~vI~D~-~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (369)
++..+.+++++++++. +|+|||+|+ ++|+.++|+++|||++.|++++++.+..+.+.+......... ...+..+..
T Consensus 86 ~~~~~~~~~~~~l~~~~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 164 (481)
T PLN02992 86 IMREAVPTLRSKIAEMHQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDIKEE-HTVQRKPLA 164 (481)
T ss_pred HHHHhHHHHHHHHHhcCCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhccccccc-cccCCCCcc
Confidence 3456778999999874 689999999 999999999999999999999998876655443211110000 000001123
Q ss_pred CCCCccccCccccchhhhhcccCCC-chHHHHHHHHhhccCceeeeccccchhhhhhhhhhhh------cCcceeEeCCC
Q 017557 80 FPPSKIKLRAHEARGLAAATVKDFG-GLSFMERLLLCLTECDAIGFKTCREIEGAYCDCVESQ------FEKRVILAGPV 152 (369)
Q Consensus 80 ~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~------~~~~~~~vGp~ 152 (369)
+|+ ...++..+++..+. . +.. ....+.+....+.+++++++||+++||+.+++.++.. ..++++.|||+
T Consensus 165 iPg-~~~l~~~dlp~~~~--~-~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~~~~~~~v~~VGPl 240 (481)
T PLN02992 165 MPG-CEPVRFEDTLDAYL--V-PDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLGRVARVPVYPIGPL 240 (481)
T ss_pred cCC-CCccCHHHhhHhhc--C-CCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhccccccccCCceEEecCc
Confidence 554 12244444553221 1 111 2344455556677899999999999999999887542 13579999999
Q ss_pred CCCCCCCCchhHHHhhhccCCCCceEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCC---------------
Q 017557 153 LPEPPASVLEEEFEMLFSSFKAKSLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGH--------------- 217 (369)
Q Consensus 153 ~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~--------------- 217 (369)
+........+++|.+|||++++++||||||||...++.+++.+++.+|+.++++|||+++...+.
T Consensus 241 ~~~~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~~~~~~~~~~~~~~~~ 320 (481)
T PLN02992 241 CRPIQSSKTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDGSACSAYFSANGGETR 320 (481)
T ss_pred cCCcCCCcchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCcccccccccccCcccccc
Confidence 86432222456799999999889999999999999999999999999999999999999742110
Q ss_pred CccccCCchhHHHHhcCCCeeEecccChHHhhcCCCccceeecCCCchHHHHHHhCCcccccccccchhHHHHHHhhhcc
Q 017557 218 DTIESALPEGFEERVKGRGFVHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLK 297 (369)
Q Consensus 218 ~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g 297 (369)
+.....+|++|.++++++|+++.+|+||.+||+|+++++|||||||||++||+++|||||+||+++||+.||+++++.||
T Consensus 321 ~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~~g 400 (481)
T PLN02992 321 DNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPLFAEQNMNAALLSDELG 400 (481)
T ss_pred cchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCEEecCccchhHHHHHHHHHHhC
Confidence 00123589999999999999999999999999999999999999999999999999999999999999999999964459
Q ss_pred eEEEEeecCCCCccCHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHhc
Q 017557 298 VGVEVERGDEDGLFTRDGVCKAVKAVMDDDSEVGKDARQNHAELREFLIS------PGLENSYVDGFVQELHSL 365 (369)
Q Consensus 298 ~G~~l~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~------~~~~~~~~~~~v~~l~~~ 365 (369)
+|+.++.. ++.++.++|.++|+++|. +++++.+|++++++++.+++ +|++.+++++|++++.+.
T Consensus 401 ~gv~~~~~--~~~~~~~~l~~av~~vm~--~~~g~~~r~~a~~~~~~a~~Av~~~~GGSS~~~l~~~v~~~~~~ 470 (481)
T PLN02992 401 IAVRSDDP--KEVISRSKIEALVRKVMV--EEEGEEMRRKVKKLRDTAEMSLSIDGGGVAHESLCRVTKECQRF 470 (481)
T ss_pred eeEEecCC--CCcccHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHH
Confidence 99999752 235899999999999998 45578999999999998762 466788899999988764
No 7
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=1.3e-55 Score=428.66 Aligned_cols=356 Identities=22% Similarity=0.336 Sum_probs=273.9
Q ss_pred hHhhcHHHHHHHHhhc--CCCEEEECC-CCChHHHHHHhCCC-eEEEeCchHHHHHhhhchhhhhcCCCCCccCCCCCCC
Q 017557 3 AMDLTEPAIEAIVRDI--KPNIVFFDF-TYWLPSLARKLGIK-SIAFVTVSPATVGYLLSPERKLRDKFLTEADLLQPPQ 78 (369)
Q Consensus 3 ~~~~~~~~l~~~l~~~--~pD~vI~D~-~~~~~~~A~~lgiP-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (369)
+++.+.++++++|++. +|+|||+|+ ++|+.++|+++||| .+.|++++++.+..+.+.+...........+.+.+ .
T Consensus 89 ~~~~~~~~~~~~l~~l~~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~-~ 167 (470)
T PLN03015 89 KMRAMKPAVRDAVKSMKRKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDTVVEGEYVDIKEP-L 167 (470)
T ss_pred HHHhchHHHHHHHHhcCCCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhcccccccCCCCCe-e
Confidence 5667899999999876 689999999 99999999999999 58888888877655555432211000000011111 2
Q ss_pred CCCCCccccCccccchhhhhcccCCCchHHHHHHHHhhccCceeeeccccchhhhhhhhhhhhc------CcceeEeCCC
Q 017557 79 GFPPSKIKLRAHEARGLAAATVKDFGGLSFMERLLLCLTECDAIGFKTCREIEGAYCDCVESQF------EKRVILAGPV 152 (369)
Q Consensus 79 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~------~~~~~~vGp~ 152 (369)
.+|+ ...++..+++..+.... ...+..+.+....+.+++++++|||++||+.+++.++..+ .++++.|||+
T Consensus 168 ~vPg-~p~l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~~~~~~~~~~~v~~VGPl 244 (470)
T PLN03015 168 KIPG-CKPVGPKELMETMLDRS--DQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAALREDMELNRVMKVPVYPIGPI 244 (470)
T ss_pred eCCC-CCCCChHHCCHhhcCCC--cHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhhcccccccCCceEEecCC
Confidence 3454 11244555554331111 1112222344445778999999999999999998887642 2569999999
Q ss_pred CCCCCCCCchhHHHhhhccCCCCceEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCC--------CCccccCC
Q 017557 153 LPEPPASVLEEEFEMLFSSFKAKSLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTG--------HDTIESAL 224 (369)
Q Consensus 153 ~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~--------~~~~~~~l 224 (369)
+........+++|.+|||++++++||||||||...++.+++.+++.+|+.++++|||+++.... .+.....+
T Consensus 245 ~~~~~~~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~~~~~~~~l 324 (470)
T PLN03015 245 VRTNVHVEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRRPASYLGASSSDDDQVSASL 324 (470)
T ss_pred CCCcccccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEecCccccccccccccchhhcC
Confidence 8532211224579999999988999999999999999999999999999999999999974211 00012358
Q ss_pred chhHHHHhcCCCeeEecccChHHhhcCCCccceeecCCCchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEee
Q 017557 225 PEGFEERVKGRGFVHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVER 304 (369)
Q Consensus 225 p~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~ 304 (369)
|++|.++++++++++.+|+||.++|+|+++++|||||||||++||+++|||||+||+++||+.||+++++.||+|+.+..
T Consensus 325 p~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~ 404 (470)
T PLN03015 325 PEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAEQWMNATLLTEEIGVAVRTSE 404 (470)
T ss_pred ChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecccccchHHHHHHHHHHhCeeEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888899999963
Q ss_pred cCCCCccCHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhc----CCCCHHHHHHHHHHH
Q 017557 305 GDEDGLFTRDGVCKAVKAVMDDDSEVGKDARQNHAELREFLIS----PGLENSYVDGFVQEL 362 (369)
Q Consensus 305 ~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~----~~~~~~~~~~~v~~l 362 (369)
.+..+.++.++++++|+++|.+++|+++.+|+||++++++.++ +|++.+++++|++++
T Consensus 405 ~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~~nl~~~~~~~ 466 (470)
T PLN03015 405 LPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSYNSLFEWAKRC 466 (470)
T ss_pred cccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHhc
Confidence 2223469999999999999962236689999999999999875 478889999999886
No 8
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.5e-55 Score=428.09 Aligned_cols=336 Identities=22% Similarity=0.362 Sum_probs=268.4
Q ss_pred hhcHHHHHHHHhhc----CC-CEEEECC-CCChHHHHHHhCCCeEEEeCchHHHHHhhhchhhhhcCCCCCccCCCCCCC
Q 017557 5 DLTEPAIEAIVRDI----KP-NIVFFDF-TYWLPSLARKLGIKSIAFVTVSPATVGYLLSPERKLRDKFLTEADLLQPPQ 78 (369)
Q Consensus 5 ~~~~~~l~~~l~~~----~p-D~vI~D~-~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (369)
+.+.++++++|++. +| +|||+|+ .+|+.++|+++|||++.|++++++.+..+++... .. .+...+.+
T Consensus 85 ~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~~~-~~------~~~~~~~p 157 (449)
T PLN02173 85 TFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLSYI-NN------GSLTLPIK 157 (449)
T ss_pred HhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhHHh-cc------CCccCCCC
Confidence 36788999999864 45 9999999 9999999999999999999988887655443211 00 11122233
Q ss_pred CCCCCccccCccccchhhhhcccCCC-chHHHHHHHHhhccCceeeeccccchhhhhhhhhhhhcCcceeEeCCCCCCC-
Q 017557 79 GFPPSKIKLRAHEARGLAAATVKDFG-GLSFMERLLLCLTECDAIGFKTCREIEGAYCDCVESQFEKRVILAGPVLPEP- 156 (369)
Q Consensus 79 ~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~- 156 (369)
++|. ++..+++.++.... ... ....+.+......+++.+++||+++||+++++..+.. ++++.|||+++..
T Consensus 158 g~p~----l~~~dlp~~~~~~~-~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~--~~v~~VGPl~~~~~ 230 (449)
T PLN02173 158 DLPL----LELQDLPTFVTPTG-SHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKV--CPVLTIGPTVPSMY 230 (449)
T ss_pred CCCC----CChhhCChhhcCCC-CchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhc--CCeeEEcccCchhh
Confidence 4442 34445555442111 111 2233444456677899999999999999999887653 3699999997421
Q ss_pred -------CCC--------CchhHHHhhhccCCCCceEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccc
Q 017557 157 -------PAS--------VLEEEFEMLFSSFKAKSLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGHDTIE 221 (369)
Q Consensus 157 -------~~~--------~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~ 221 (369)
... ..+++|.+||+.++++++|||||||....+.+++.+++.+| ++.+|+|+++.. ..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~~flWvvr~~-----~~ 303 (449)
T PLN02173 231 LDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNFSYLWVVRAS-----EE 303 (449)
T ss_pred ccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCCCEEEEEecc-----ch
Confidence 000 12346999999999899999999999999999999999999 889999999853 23
Q ss_pred cCCchhHHHHhcCCCeeEecccChHHhhcCCCccceeecCCCchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEE
Q 017557 222 SALPEGFEERVKGRGFVHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVE 301 (369)
Q Consensus 222 ~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~ 301 (369)
..+|++|.++++++|+++.+|+||.+||+|+++++|||||||||++||+++|||||+||+++||+.||+++++.||+|+.
T Consensus 304 ~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~ 383 (449)
T PLN02173 304 SKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGVR 383 (449)
T ss_pred hcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCceEE
Confidence 45888999988778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCccCHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHH
Q 017557 302 VERGDEDGLFTRDGVCKAVKAVMDDDSEVGKDARQNHAELREFLI----SPGLENSYVDGFVQELH 363 (369)
Q Consensus 302 l~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~----~~~~~~~~~~~~v~~l~ 363 (369)
+..++.++.++.++|.++|+++|. +++++.+|+||+++++.++ ++|++.+++++|++++.
T Consensus 384 v~~~~~~~~~~~e~v~~av~~vm~--~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l~~~v~~~~ 447 (449)
T PLN02173 384 VKAEKESGIAKREEIEFSIKEVME--GEKSKEMKENAGKWRDLAVKSLSEGGSTDININTFVSKIQ 447 (449)
T ss_pred EeecccCCcccHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhc
Confidence 976543446899999999999997 5557899999999999988 56888999999999875
No 9
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=4.1e-55 Score=426.54 Aligned_cols=346 Identities=22% Similarity=0.323 Sum_probs=265.9
Q ss_pred hhcHHHHHHHHhhc------CCCEEEECC-CCChHHHHHHhCCCeEEEeCchHHHHHhhhchhhhhcCC---CCCccCCC
Q 017557 5 DLTEPAIEAIVRDI------KPNIVFFDF-TYWLPSLARKLGIKSIAFVTVSPATVGYLLSPERKLRDK---FLTEADLL 74 (369)
Q Consensus 5 ~~~~~~l~~~l~~~------~pD~vI~D~-~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 74 (369)
+.+.+++++++++. +++|||+|+ ++|+.++|+++|||++.|++++++.+..+.++..+.... +..... .
T Consensus 85 ~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~ 163 (451)
T PLN02410 85 KECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANNVLAPLKEPK-G 163 (451)
T ss_pred HHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhccCCCCccccc-c
Confidence 45677788888753 469999999 999999999999999999999999877666543322110 111100 0
Q ss_pred CCCCCCCCCccccCccccchhhhhcccCCC-chHHHHHHHHhhccCceeeeccccchhhhhhhhhhhhcCcceeEeCCCC
Q 017557 75 QPPQGFPPSKIKLRAHEARGLAAATVKDFG-GLSFMERLLLCLTECDAIGFKTCREIEGAYCDCVESQFEKRVILAGPVL 153 (369)
Q Consensus 75 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~ 153 (369)
.....+|+ ...++..+++.... . ... ....+.. ...+.+++++++|||++||+.+++.++..+++++++|||++
T Consensus 164 ~~~~~iPg-~~~~~~~dlp~~~~--~-~~~~~~~~~~~-~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~v~~vGpl~ 238 (451)
T PLN02410 164 QQNELVPE-FHPLRCKDFPVSHW--A-SLESIMELYRN-TVDKRTASSVIINTASCLESSSLSRLQQQLQIPVYPIGPLH 238 (451)
T ss_pred CccccCCC-CCCCChHHCcchhc--C-CcHHHHHHHHH-HhhcccCCEEEEeChHHhhHHHHHHHHhccCCCEEEecccc
Confidence 01112343 11133333443221 1 111 1122211 22356789999999999999999998876777899999998
Q ss_pred CCCC-CCC---chhHHHhhhccCCCCceEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCC-CccccCCchhH
Q 017557 154 PEPP-ASV---LEEEFEMLFSSFKAKSLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGH-DTIESALPEGF 228 (369)
Q Consensus 154 ~~~~-~~~---~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~-~~~~~~lp~~~ 228 (369)
...+ ... .+.+|.+|||++++++||||||||....+.+++.+++.+|+.++++|+|+++..... ......+|++|
T Consensus 239 ~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~~~~~~~~lp~~f 318 (451)
T PLN02410 239 LVASAPTSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSVRGSEWIESLPKEF 318 (451)
T ss_pred cccCCCccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCcccccchhhcCChhH
Confidence 5422 111 234689999999889999999999999999999999999999999999999853211 10123589999
Q ss_pred HHHhcCCCeeEecccChHHhhcCCCccceeecCCCchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecCCC
Q 017557 229 EERVKGRGFVHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDED 308 (369)
Q Consensus 229 ~~~~~~~~~~v~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~ 308 (369)
.+++++++ ++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++.||+|+.+.. .
T Consensus 319 ~er~~~~g-~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~-~-- 394 (451)
T PLN02410 319 SKIISGRG-YIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVEG-D-- 394 (451)
T ss_pred HHhccCCe-EEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeCC-c--
Confidence 99987655 6669999999999999999999999999999999999999999999999999999999999999973 3
Q ss_pred CccCHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHh
Q 017557 309 GLFTRDGVCKAVKAVMDDDSEVGKDARQNHAELREFLI----SPGLENSYVDGFVQELHS 364 (369)
Q Consensus 309 ~~~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~----~~~~~~~~~~~~v~~l~~ 364 (369)
+++++|+++|+++|. +++++.||++|+++++.++ ++|++.+++++||+++..
T Consensus 395 --~~~~~v~~av~~lm~--~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~~~ 450 (451)
T PLN02410 395 --LDRGAVERAVKRLMV--EEEGEEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFMRT 450 (451)
T ss_pred --ccHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 899999999999997 4447899999999999988 458889999999999864
No 10
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=7.1e-55 Score=428.78 Aligned_cols=360 Identities=23% Similarity=0.325 Sum_probs=277.1
Q ss_pred hHhhcHHHHHHHHhhc--CCCEEEECC-CCChHHHHHHhCCCeEEEeCchHHHHHhhhchhhhhcCCCCCccCCCCCCCC
Q 017557 3 AMDLTEPAIEAIVRDI--KPNIVFFDF-TYWLPSLARKLGIKSIAFVTVSPATVGYLLSPERKLRDKFLTEADLLQPPQG 79 (369)
Q Consensus 3 ~~~~~~~~l~~~l~~~--~pD~vI~D~-~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (369)
+++.+.+++++++++. +++|||+|+ ++|+.++|+++|||++.|++++++.+.++.+.+...............+ ..
T Consensus 92 ~~~~~~~~l~~~L~~l~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 170 (480)
T PLN00164 92 YIQLHAPHVRAAIAGLSCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPALDEEVAVEFEEMEGA-VD 170 (480)
T ss_pred HHHhhhHHHHHHHHhcCCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhhhcccccCcccccCcc-ee
Confidence 4567888999999876 469999999 9999999999999999999999998887776533211110000010111 12
Q ss_pred CCCCccccCccccchhhhhcccCCCchHHHHHHHHhhccCceeeeccccchhhhhhhhhhhhc------CcceeEeCCCC
Q 017557 80 FPPSKIKLRAHEARGLAAATVKDFGGLSFMERLLLCLTECDAIGFKTCREIEGAYCDCVESQF------EKRVILAGPVL 153 (369)
Q Consensus 80 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~------~~~~~~vGp~~ 153 (369)
+|+ ...++..+++.+..... ......+....+.+.+++.+++|||++||+.+++.++... .++++.|||++
T Consensus 171 iPG-lp~l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~~~~~~v~~vGPl~ 247 (480)
T PLN00164 171 VPG-LPPVPASSLPAPVMDKK--SPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAIADGRCTPGRPAPTVYPIGPVI 247 (480)
T ss_pred cCC-CCCCChHHCCchhcCCC--cHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHHHhccccccCCCCceEEeCCCc
Confidence 443 11244445554331111 0112233334456678999999999999999998887632 25799999998
Q ss_pred CCCC---CCCchhHHHhhhccCCCCceEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCC-------CccccC
Q 017557 154 PEPP---ASVLEEEFEMLFSSFKAKSLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGH-------DTIESA 223 (369)
Q Consensus 154 ~~~~---~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~-------~~~~~~ 223 (369)
.... ....+++|.+|||+++++++|||||||....+.+++.+++.+|+.++++|||+++..... ......
T Consensus 248 ~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~flWv~~~~~~~~~~~~~~~~~~~~ 327 (480)
T PLN00164 248 SLAFTPPAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFLWVLRGPPAAGSRHPTDADLDEL 327 (480)
T ss_pred cccccCCCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCEEEEEcCCcccccccccccchhhh
Confidence 4321 112456899999999989999999999988999999999999999999999999853210 001224
Q ss_pred CchhHHHHhcCCCeeEecccChHHhhcCCCccceeecCCCchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEe
Q 017557 224 LPEGFEERVKGRGFVHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVE 303 (369)
Q Consensus 224 lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~ 303 (369)
+|++|.++++++++++.+|+||.+||+|+++++|||||||||++||+++|||||+||+++||+.||+++++.||+|+.+.
T Consensus 328 lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~ 407 (480)
T PLN00164 328 LPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMK 407 (480)
T ss_pred CChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEec
Confidence 89999999999999999999999999999999999999999999999999999999999999999999887679999996
Q ss_pred ecC-CCCccCHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHhcc
Q 017557 304 RGD-EDGLFTRDGVCKAVKAVMDDDSEVGKDARQNHAELREFLIS----PGLENSYVDGFVQELHSLA 366 (369)
Q Consensus 304 ~~~-~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~----~~~~~~~~~~~v~~l~~~~ 366 (369)
..+ .++.+++++|.++|+++|.+++++++.+|++|+++++.+++ +|++.+++++|++++.+++
T Consensus 408 ~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~gGSS~~~l~~~v~~~~~~~ 475 (480)
T PLN00164 408 VDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVEEGGSSYAALQRLAREIRHGA 475 (480)
T ss_pred cccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhcc
Confidence 432 12458999999999999973222478899999999999875 4778899999999998764
No 11
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=7.8e-55 Score=426.85 Aligned_cols=361 Identities=27% Similarity=0.391 Sum_probs=273.8
Q ss_pred hHhhcHHHHHHHHhhc--CCCEEEECC-CCChHHHHHHhCCCeEEEeCchHHHHHhhhchhhhhcCCCCCccCCCCCCCC
Q 017557 3 AMDLTEPAIEAIVRDI--KPNIVFFDF-TYWLPSLARKLGIKSIAFVTVSPATVGYLLSPERKLRDKFLTEADLLQPPQG 79 (369)
Q Consensus 3 ~~~~~~~~l~~~l~~~--~pD~vI~D~-~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (369)
+++.+.++++++|++. +|+|||+|+ ++|+.++|+++|||++.|++++++.+..++................+...++
T Consensus 101 ~~~~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~~~~~~~~~iPg 180 (491)
T PLN02534 101 AVDKLQQPLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRLHNAHLSVSSDSEPFVVPG 180 (491)
T ss_pred HHHHhHHHHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHHhcccccCCCCCceeecCC
Confidence 4556788999999863 689999999 9999999999999999999999887765443322111111111111111122
Q ss_pred CCCCccccCccccchhhhhcccCCCchHHH-HHHHHhhccCceeeeccccchhhhhhhhhhhhcCcceeEeCCCCCCCC-
Q 017557 80 FPPSKIKLRAHEARGLAAATVKDFGGLSFM-ERLLLCLTECDAIGFKTCREIEGAYCDCVESQFEKRVILAGPVLPEPP- 157 (369)
Q Consensus 80 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~- 157 (369)
+|. ...++..+++..+. . . .....+ ..+......++.+++|||++||+.+++.++..++++++.|||++....
T Consensus 181 ~p~-~~~l~~~dlp~~~~--~-~-~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~~~~~~v~~VGPL~~~~~~ 255 (491)
T PLN02534 181 MPQ-SIEITRAQLPGAFV--S-L-PDLDDVRNKMREAESTAFGVVVNSFNELEHGCAEAYEKAIKKKVWCVGPVSLCNKR 255 (491)
T ss_pred CCc-cccccHHHCChhhc--C-c-ccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHHHhhcCCcEEEECcccccccc
Confidence 221 11234444544321 0 0 111122 222223345789999999999999999988777778999999975211
Q ss_pred --------C-CC-chhHHHhhhccCCCCceEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCCCc-cccCCch
Q 017557 158 --------A-SV-LEEEFEMLFSSFKAKSLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGHDT-IESALPE 226 (369)
Q Consensus 158 --------~-~~-~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~-~~~~lp~ 226 (369)
. .. .+++|.+|||.+++++||||||||......+++.+++.+|+.++.+|+|+++....... ....+|+
T Consensus 256 ~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~~r~~~~~~~~~~~~~p~ 335 (491)
T PLN02534 256 NLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWVIKTGEKHSELEEWLVKE 335 (491)
T ss_pred cccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCccccchhhhcCch
Confidence 0 01 23579999999998999999999999999999999999999999999999985321110 1124689
Q ss_pred hHHHHhcCCCeeEecccChHHhhcCCCccceeecCCCchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeec-
Q 017557 227 GFEERVKGRGFVHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERG- 305 (369)
Q Consensus 227 ~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~- 305 (369)
+|.++++++|+++.+|+||.++|+|+++++|||||||||++||+++|||||++|+++||+.||+++++.||+|+.+...
T Consensus 336 gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~ 415 (491)
T PLN02534 336 NFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAEQFLNEKLIVEVLRIGVRVGVEV 415 (491)
T ss_pred hhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEeccccccHHHHHHHHHHhhcceEEecccc
Confidence 9999988899999999999999999999999999999999999999999999999999999999999999999988521
Q ss_pred -----CC---CCccCHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHhcccC
Q 017557 306 -----DE---DGLFTRDGVCKAVKAVMDDDSEVGKDARQNHAELREFLIS----PGLENSYVDGFVQELHSLADL 368 (369)
Q Consensus 306 -----~~---~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~----~~~~~~~~~~~v~~l~~~~~~ 368 (369)
++ +..+++++|.++|+++|.+++|+++.+|+||++|++.+++ +|++.+++++||+++++...|
T Consensus 416 ~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av~~GGSS~~nl~~fv~~i~~~~~~ 490 (491)
T PLN02534 416 PVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAMELGGSSHINLSILIQDVLKQQSL 490 (491)
T ss_pred cccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcc
Confidence 11 1258999999999999963245688999999999998875 488899999999999876543
No 12
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=1.7e-54 Score=422.21 Aligned_cols=348 Identities=21% Similarity=0.300 Sum_probs=265.8
Q ss_pred HHHHHHHHhhc----CC-CEEEECC-CCChHHHHHHhCCCeEEEeCchHHHHHhhhchhhhhcCC-CCCccCCCCCCCCC
Q 017557 8 EPAIEAIVRDI----KP-NIVFFDF-TYWLPSLARKLGIKSIAFVTVSPATVGYLLSPERKLRDK-FLTEADLLQPPQGF 80 (369)
Q Consensus 8 ~~~l~~~l~~~----~p-D~vI~D~-~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (369)
.+.+.+++++. +| +|||+|. ++|+.++|+++|||++.|++++++.+.++.+.+...... .....+.. .+..+
T Consensus 99 ~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v 177 (468)
T PLN02207 99 RNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLADRHSKDTSVFVRNSE-EMLSI 177 (468)
T ss_pred HHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhhccccccccCcCCCC-CeEEC
Confidence 44566666643 34 8999999 999999999999999999999998877766543221100 00000000 11124
Q ss_pred CCCccccCccccchhhhhcccCCCchHHHHHHHHhhccCceeeeccccchhhhhhhhhhh-hcCcceeEeCCCCCCCCCC
Q 017557 81 PPSKIKLRAHEARGLAAATVKDFGGLSFMERLLLCLTECDAIGFKTCREIEGAYCDCVES-QFEKRVILAGPVLPEPPAS 159 (369)
Q Consensus 81 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~-~~~~~~~~vGp~~~~~~~~ 159 (369)
|+-...++..+++.++. . .. ....+.+....+.+++++++||+++||+++++.++. ...|+++.|||++......
T Consensus 178 Pgl~~~l~~~dlp~~~~--~-~~-~~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~~~~~~~~~p~v~~VGPl~~~~~~~ 253 (468)
T PLN02207 178 PGFVNPVPANVLPSALF--V-ED-GYDAYVKLAILFTKANGILVNSSFDIEPYSVNHFLDEQNYPSVYAVGPIFDLKAQP 253 (468)
T ss_pred CCCCCCCChHHCcchhc--C-Cc-cHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHHhccCCCcEEEecCCcccccCC
Confidence 43101255555665442 1 11 233344455567889999999999999998888754 3446899999998643211
Q ss_pred -C-----chhHHHhhhccCCCCceEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhc
Q 017557 160 -V-----LEEEFEMLFSSFKAKSLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVK 233 (369)
Q Consensus 160 -~-----~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~ 233 (369)
+ .+++|.+|||+++++++|||||||....+.+++.+++.+|+.++++|||+++..... ....+|++|.++++
T Consensus 254 ~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~~r~~~~~--~~~~lp~~f~er~~ 331 (468)
T PLN02207 254 HPEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWSLRTEEVT--NDDLLPEGFLDRVS 331 (468)
T ss_pred CCccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEEEeCCCcc--ccccCCHHHHhhcC
Confidence 1 126799999999888999999999999999999999999999999999999853210 13458999998876
Q ss_pred CCCeeEecccChHHhhcCCCccceeecCCCchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeec---CCCCc
Q 017557 234 GRGFVHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERG---DEDGL 310 (369)
Q Consensus 234 ~~~~~v~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~---~~~~~ 310 (369)
.+ ..+.+|+||.+||+|+++++|||||||||++||+++|||||+||+++||+.||+++++.||+|+.+..+ +.++.
T Consensus 332 ~~-g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~~ 410 (468)
T PLN02207 332 GR-GMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQLNAFLMVKELKLAVELKLDYRVHSDEI 410 (468)
T ss_pred CC-eEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEEecccccccCCc
Confidence 54 466799999999999999999999999999999999999999999999999999998866999988522 11235
Q ss_pred cCHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHhcc
Q 017557 311 FTRDGVCKAVKAVMDDDSEVGKDARQNHAELREFLIS----PGLENSYVDGFVQELHSLA 366 (369)
Q Consensus 311 ~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~----~~~~~~~~~~~v~~l~~~~ 366 (369)
++.++|.++|+++|. + ++++||+||+++++.+++ +|++.+++++|++++...+
T Consensus 411 v~~e~i~~av~~vm~--~-~~~~~r~~a~~l~~~a~~A~~~GGSS~~~l~~~v~~~~~~~ 467 (468)
T PLN02207 411 VNANEIETAIRCVMN--K-DNNVVRKRVMDISQMIQRATKNGGSSFAAIEKFIHDVIGIK 467 (468)
T ss_pred ccHHHHHHHHHHHHh--c-chHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhcc
Confidence 799999999999996 3 278999999999999884 4778899999999987654
No 13
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=5.8e-55 Score=424.10 Aligned_cols=335 Identities=19% Similarity=0.293 Sum_probs=261.2
Q ss_pred hHhhcHHHHHHHHhhc----CCCEEEECC-CCChHHHHHHhCCCeEEEeCchHHHHHhhhchhhhhcCCCCC-ccCCCCC
Q 017557 3 AMDLTEPAIEAIVRDI----KPNIVFFDF-TYWLPSLARKLGIKSIAFVTVSPATVGYLLSPERKLRDKFLT-EADLLQP 76 (369)
Q Consensus 3 ~~~~~~~~l~~~l~~~----~pD~vI~D~-~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 76 (369)
+++.+.++++++|++. +++|||+|+ .+|+..+|+++|||++.|++++++.+.++.+.+......+.. ..+. .
T Consensus 92 ~~~~~~~~~~~~l~~l~~~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~~~~~~~--~ 169 (451)
T PLN03004 92 ILCFSNPSVHRTLFSLSRNFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTIDETTPGKNLKDI--P 169 (451)
T ss_pred HHHhhhHHHHHHHHhcCCCCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhccccccccccccC--C
Confidence 3456788899999875 349999999 999999999999999999999999888776643221111000 0010 1
Q ss_pred CCCCCCCccccCccccchhhhhcccCCCchHHHHHHHHhhccCceeeeccccchhhhhhhhhhhhcC-cceeEeCCCCCC
Q 017557 77 PQGFPPSKIKLRAHEARGLAAATVKDFGGLSFMERLLLCLTECDAIGFKTCREIEGAYCDCVESQFE-KRVILAGPVLPE 155 (369)
Q Consensus 77 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~-~~~~~vGp~~~~ 155 (369)
...+|+ ...++..+++.+.+... ......+.+....+.+++.+++|||++||+.+++.++..+. ++++.|||++..
T Consensus 170 ~v~iPg-~p~l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~~~~~~~v~~vGPl~~~ 246 (451)
T PLN03004 170 TVHIPG-VPPMKGSDMPKAVLERD--DEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITEELCFRNIYPIGPLIVN 246 (451)
T ss_pred eecCCC-CCCCChHHCchhhcCCc--hHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHhcCCCCCEEEEeeeccC
Confidence 112343 11244455565442111 01234444555667788999999999999999998876543 589999999753
Q ss_pred CC-C-C--CchhHHHhhhccCCCCceEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCCCc---ccc-CCchh
Q 017557 156 PP-A-S--VLEEEFEMLFSSFKAKSLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGHDT---IES-ALPEG 227 (369)
Q Consensus 156 ~~-~-~--~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~---~~~-~lp~~ 227 (369)
.. . . ..+.+|.+|||++++++||||||||...++.+++++++.+|+.++++|+|+++.....+. ... .+|++
T Consensus 247 ~~~~~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~~~~~~~~~~~~~lp~g 326 (451)
T PLN03004 247 GRIEDRNDNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPPELEKTELDLKSLLPEG 326 (451)
T ss_pred ccccccccchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCccccccccchhhhCChH
Confidence 21 1 1 123569999999988999999999999999999999999999999999999985311000 112 38999
Q ss_pred HHHHhcCCCeeEecccChHHhhcCCCccceeecCCCchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecCC
Q 017557 228 FEERVKGRGFVHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDE 307 (369)
Q Consensus 228 ~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~ 307 (369)
|.++++++|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++.||+|+.++..+
T Consensus 327 f~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~- 405 (451)
T PLN03004 327 FLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEIKIAISMNESE- 405 (451)
T ss_pred HHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEecCCc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999998779999997532
Q ss_pred CCccCHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhcC
Q 017557 308 DGLFTRDGVCKAVKAVMDDDSEVGKDARQNHAELREFLISP 348 (369)
Q Consensus 308 ~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~ 348 (369)
.+.+++++|+++|+++|+ +++||+||+++++..+.+
T Consensus 406 ~~~~~~e~l~~av~~vm~-----~~~~r~~a~~~~~~a~~A 441 (451)
T PLN03004 406 TGFVSSTEVEKRVQEIIG-----ECPVRERTMAMKNAAELA 441 (451)
T ss_pred CCccCHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHHHH
Confidence 235899999999999998 789999999999998753
No 14
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=2e-54 Score=427.34 Aligned_cols=354 Identities=26% Similarity=0.371 Sum_probs=270.0
Q ss_pred HhhcHHHHHHHHhhcCCCEEEECC-CCChHHHHHHhCCCeEEEeCchHHHHHhhhchhhhhcCCCCCccCCCCCCCCCCC
Q 017557 4 MDLTEPAIEAIVRDIKPNIVFFDF-TYWLPSLARKLGIKSIAFVTVSPATVGYLLSPERKLRDKFLTEADLLQPPQGFPP 82 (369)
Q Consensus 4 ~~~~~~~l~~~l~~~~pD~vI~D~-~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 82 (369)
.+.+.+.+++++++.+|||||+|. ++|+..+|+++|||+++|++++++............+.........+...+.+|+
T Consensus 107 ~~~l~~~l~~~l~~~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~p~ 186 (482)
T PLN03007 107 TKYFKDQLEKLLETTRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCASYCIRVHKPQKKVASSSEPFVIPDLPG 186 (482)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHHHHHHHhcccccccCCCCceeeCCCCCC
Confidence 456778888888877899999999 9999999999999999999988877655443321111000000000111122331
Q ss_pred CccccCccccchhhhhcccCCC-chHHHHHHHHhhccCceeeeccccchhhhhhhhhhhhcCcceeEeCCCCCCCCC---
Q 017557 83 SKIKLRAHEARGLAAATVKDFG-GLSFMERLLLCLTECDAIGFKTCREIEGAYCDCVESQFEKRVILAGPVLPEPPA--- 158 (369)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~--- 158 (369)
.+.++..+++.. . ... ....+....+...+++++++||+++||+++.+.+++....++++|||+......
T Consensus 187 -~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~~~~~~~~~~~~~~~~VGPl~~~~~~~~~ 260 (482)
T PLN03007 187 -DIVITEEQINDA----D-EESPMGKFMKEVRESEVKSFGVLVNSFYELESAYADFYKSFVAKRAWHIGPLSLYNRGFEE 260 (482)
T ss_pred -ccccCHHhcCCC----C-CchhHHHHHHHHHhhcccCCEEEEECHHHHHHHHHHHHHhccCCCEEEEcccccccccccc
Confidence 112222233321 1 111 123334455667789999999999999998888877666679999998643211
Q ss_pred ------C--CchhHHHhhhccCCCCceEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHH
Q 017557 159 ------S--VLEEEFEMLFSSFKAKSLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEE 230 (369)
Q Consensus 159 ------~--~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~ 230 (369)
. ..+++|.+||++++++++|||||||+...+.+++.+++.+|+.++++|||+++...........+|++|.+
T Consensus 261 ~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~l~~~~~~flw~~~~~~~~~~~~~~lp~~~~~ 340 (482)
T PLN03007 261 KAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAGLEGSGQNFIWVVRKNENQGEKEEWLPEGFEE 340 (482)
T ss_pred ccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHHHHHCCCCEEEEEecCCcccchhhcCCHHHHH
Confidence 0 12467999999998899999999999988899999999999999999999998642211012358999999
Q ss_pred HhcCCCeeEecccChHHhhcCCCccceeecCCCchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecC----
Q 017557 231 RVKGRGFVHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGD---- 306 (369)
Q Consensus 231 ~~~~~~~~v~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~---- 306 (369)
++.++|+++.+|+||.+||+|+++++|||||||||++||+++|||||+||+++||+.||+++++.|++|+.+....
T Consensus 341 r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~ 420 (482)
T PLN03007 341 RTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKV 420 (482)
T ss_pred HhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEecccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999987777777764210
Q ss_pred CCCccCHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHhc
Q 017557 307 EDGLFTRDGVCKAVKAVMDDDSEVGKDARQNHAELREFLIS----PGLENSYVDGFVQELHSL 365 (369)
Q Consensus 307 ~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~----~~~~~~~~~~~v~~l~~~ 365 (369)
+.+.+++++|+++|+++|. ++++++||+||+++++.+++ +|++.+++++||+++++.
T Consensus 421 ~~~~~~~~~l~~av~~~m~--~~~~~~~r~~a~~~~~~a~~a~~~gGsS~~~l~~~v~~~~~~ 481 (482)
T PLN03007 421 KGDFISREKVEKAVREVIV--GEEAEERRLRAKKLAEMAKAAVEEGGSSFNDLNKFMEELNSR 481 (482)
T ss_pred ccCcccHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhc
Confidence 1235899999999999998 45567999999999999875 477899999999998865
No 15
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=4e-54 Score=421.29 Aligned_cols=353 Identities=23% Similarity=0.318 Sum_probs=271.5
Q ss_pred hcHHHHHHHHhhc----CC-CEEEECC-CCChHHHHHHhCCCeEEEeCchHHHHHhhhchhhhhcCCCCCccCCCCCCCC
Q 017557 6 LTEPAIEAIVRDI----KP-NIVFFDF-TYWLPSLARKLGIKSIAFVTVSPATVGYLLSPERKLRDKFLTEADLLQPPQG 79 (369)
Q Consensus 6 ~~~~~l~~~l~~~----~p-D~vI~D~-~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (369)
.+.++++++|++. +| +|||+|+ ++|+.++|+++|||+++|++++++.+..+.+..... .+......+.....
T Consensus 98 ~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 175 (480)
T PLN02555 98 VGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYYHGL--VPFPTETEPEIDVQ 175 (480)
T ss_pred hhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHhhcC--CCcccccCCCceee
Confidence 5677888888753 44 9999999 999999999999999999999999888766652210 01110000001112
Q ss_pred CCCCccccCccccchhhhhcccCCC-chHHHHHHHHhhccCceeeeccccchhhhhhhhhhhhcCcceeEeCCCCCCCC-
Q 017557 80 FPPSKIKLRAHEARGLAAATVKDFG-GLSFMERLLLCLTECDAIGFKTCREIEGAYCDCVESQFEKRVILAGPVLPEPP- 157 (369)
Q Consensus 80 ~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~- 157 (369)
+|+ .+.++..+++.++.... .+. .+..+.+......+++++++|||++||+.+++.+++.+ + ++.|||++....
T Consensus 176 iPg-lp~l~~~dlp~~~~~~~-~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~~-~-v~~iGPl~~~~~~ 251 (480)
T PLN02555 176 LPC-MPLLKYDEIPSFLHPSS-PYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIIDYMSKLC-P-IKPVGPLFKMAKT 251 (480)
T ss_pred cCC-CCCcCHhhCcccccCCC-CchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHhhCC-C-EEEeCcccCcccc
Confidence 443 11255556665442111 122 23444455556778999999999999999998886643 4 999999975321
Q ss_pred --C---C---CchhHHHhhhccCCCCceEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCCC-ccccCCchhH
Q 017557 158 --A---S---VLEEEFEMLFSSFKAKSLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGHD-TIESALPEGF 228 (369)
Q Consensus 158 --~---~---~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~-~~~~~lp~~~ 228 (369)
. . ..+++|.+||+.++++++|||||||+...+.+++.+++.+|+.++++|||+++...... .....+|++|
T Consensus 252 ~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~~~~~~~~~~~~~~~lp~~~ 331 (480)
T PLN02555 252 PNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWVMRPPHKDSGVEPHVLPEEF 331 (480)
T ss_pred ccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEEEEecCcccccchhhcCChhh
Confidence 1 1 13467999999998889999999999999999999999999999999999987431110 0123588888
Q ss_pred HHHhcCCCeeEecccChHHhhcCCCccceeecCCCchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecC-C
Q 017557 229 EERVKGRGFVHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGD-E 307 (369)
Q Consensus 229 ~~~~~~~~~~v~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~-~ 307 (369)
.+++++ |+.+.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++.||+|+.+...+ .
T Consensus 332 ~~~~~~-~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~~~ 410 (480)
T PLN02555 332 LEKAGD-KGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVFKTGVRLCRGEAE 410 (480)
T ss_pred hhhcCC-ceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCccccHHHHHHHHHHhCceEEccCCccc
Confidence 887754 56777999999999999999999999999999999999999999999999999999999999999995321 1
Q ss_pred CCccCHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHhccc
Q 017557 308 DGLFTRDGVCKAVKAVMDDDSEVGKDARQNHAELREFLI----SPGLENSYVDGFVQELHSLAD 367 (369)
Q Consensus 308 ~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~----~~~~~~~~~~~~v~~l~~~~~ 367 (369)
.+.++.++|.++|+++|. +++++.+|+||++|+++.+ ++|++.+++++||+++.+...
T Consensus 411 ~~~v~~~~v~~~v~~vm~--~~~g~~~r~ra~~l~~~a~~A~~egGSS~~~l~~~v~~i~~~~~ 472 (480)
T PLN02555 411 NKLITREEVAECLLEATV--GEKAAELKQNALKWKEEAEAAVAEGGSSDRNFQEFVDKLVRKSV 472 (480)
T ss_pred cCcCcHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhccc
Confidence 235899999999999997 5668899999999999966 458889999999999987643
No 16
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=8.9e-54 Score=417.99 Aligned_cols=342 Identities=22% Similarity=0.328 Sum_probs=265.6
Q ss_pred hHh-hcHHHHHHHHhhcC----CCEEEECC-CCChHHHHHHhCCCeEEEeCchHHHHHhhhchhhhhcCCCCCccCCC--
Q 017557 3 AMD-LTEPAIEAIVRDIK----PNIVFFDF-TYWLPSLARKLGIKSIAFVTVSPATVGYLLSPERKLRDKFLTEADLL-- 74 (369)
Q Consensus 3 ~~~-~~~~~l~~~l~~~~----pD~vI~D~-~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 74 (369)
+++ .+.+++++++++.. ++|||+|+ .+|+.++|+++|||++.|+++++..+..+.+.+...........+.+
T Consensus 82 a~~~~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (448)
T PLN02562 82 SMENTMPPQLERLLHKLDEDGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLISETGCPRQ 161 (448)
T ss_pred HHHHhchHHHHHHHHHhcCCCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhcccccccccccc
Confidence 454 58899999998752 37999999 99999999999999999999998877766554322111100000000
Q ss_pred -CCCCCCCCCccccCccccchhhhhcccCCC-chHHHHHHHHhhccCceeeeccccchhhhhhhhhhh----hcCcceeE
Q 017557 75 -QPPQGFPPSKIKLRAHEARGLAAATVKDFG-GLSFMERLLLCLTECDAIGFKTCREIEGAYCDCVES----QFEKRVIL 148 (369)
Q Consensus 75 -~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~----~~~~~~~~ 148 (369)
.+...+|+ .+.++..+++.++.... ... .+..+.+......+++.+++|||++||+.+++.... ...++++.
T Consensus 162 ~~~~~~~Pg-~~~l~~~dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~~~~v~~ 239 (448)
T PLN02562 162 LEKICVLPE-QPLLSTEDLPWLIGTPK-ARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQASYNNGQNPQILQ 239 (448)
T ss_pred ccccccCCC-CCCCChhhCcchhcCCC-cchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhhhccccCCCEEE
Confidence 11113443 11244555665442111 111 234455556667788999999999999988876543 24578999
Q ss_pred eCCCCCCCCC----C---CchhHHHhhhccCCCCceEEEeeCCCc-cCCHHHHHHHHHHHHhcCCcEEEEECCCCCCCcc
Q 017557 149 AGPVLPEPPA----S---VLEEEFEMLFSSFKAKSLIFCALGSEC-VLKKDQFQELILGFELTGLPFFAALKPPTGHDTI 220 (369)
Q Consensus 149 vGp~~~~~~~----~---~~~~~~~~~l~~~~~~~~v~vs~GS~~-~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~ 220 (369)
|||++..... . +.+.+|.+||++++++++|||||||.. ..+.+++.+++.+|+..+++|||+++.. .
T Consensus 240 iGpl~~~~~~~~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~~-----~ 314 (448)
T PLN02562 240 IGPLHNQEATTITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLNPV-----W 314 (448)
T ss_pred ecCcccccccccCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcCC-----c
Confidence 9999865321 1 124568899999988899999999986 5788999999999999999999999753 2
Q ss_pred ccCCchhHHHHhcCCCeeEecccChHHhhcCCCccceeecCCCchHHHHHHhCCcccccccccchhHHHHHHhhhcceEE
Q 017557 221 ESALPEGFEERVKGRGFVHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGV 300 (369)
Q Consensus 221 ~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~ 300 (369)
...+|++|.++++ +|+++.+|+||.+||+|+++++|||||||||++||+++|||+|++|+++||+.||+++++.||+|+
T Consensus 315 ~~~l~~~~~~~~~-~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~ 393 (448)
T PLN02562 315 REGLPPGYVERVS-KQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGV 393 (448)
T ss_pred hhhCCHHHHHHhc-cCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCcee
Confidence 3358888888875 467778999999999999999999999999999999999999999999999999999988779998
Q ss_pred EEeecCCCCccCHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHH
Q 017557 301 EVERGDEDGLFTRDGVCKAVKAVMDDDSEVGKDARQNHAELREFLISP---GLENSYVDGFVQELH 363 (369)
Q Consensus 301 ~l~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~---~~~~~~~~~~v~~l~ 363 (369)
.+. + ++.+++.++|+++|. +++||+||+++++.++.. |++.+++++||++++
T Consensus 394 ~~~--~----~~~~~l~~~v~~~l~-----~~~~r~~a~~l~~~~~~~~~gGSS~~nl~~~v~~~~ 448 (448)
T PLN02562 394 RIS--G----FGQKEVEEGLRKVME-----DSGMGERLMKLRERAMGEEARLRSMMNFTTLKDELK 448 (448)
T ss_pred EeC--C----CCHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhC
Confidence 884 3 799999999999998 789999999999998753 688999999999874
No 17
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=1.3e-53 Score=417.27 Aligned_cols=343 Identities=21% Similarity=0.318 Sum_probs=262.6
Q ss_pred hhcHHHHHHHHhhcCCCEEEECC-CCChHHHHHHhCCCeEEEeCchHHHHHhhhchhhhhcCCCCCc-cCCCCCCCCCCC
Q 017557 5 DLTEPAIEAIVRDIKPNIVFFDF-TYWLPSLARKLGIKSIAFVTVSPATVGYLLSPERKLRDKFLTE-ADLLQPPQGFPP 82 (369)
Q Consensus 5 ~~~~~~l~~~l~~~~pD~vI~D~-~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~ 82 (369)
+.+.+.+++++++.+|||||+|. ++|+..+|+++|||++.|+++++..+..+.+..... .+... .+.. ....+|+
T Consensus 89 ~~~~~~l~~~l~~~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~Pg 165 (456)
T PLN02210 89 KVGAKNLSKIIEEKRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKT--NSFPDLEDLN-QTVELPA 165 (456)
T ss_pred HhhhHHHHHHHhcCCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhcc--CCCCcccccC-CeeeCCC
Confidence 45677899999888999999999 999999999999999999999888877665532111 11111 1000 1112443
Q ss_pred CccccCccccchhhhhcccCCC-ch-HHHHHHHHhhccCceeeeccccchhhhhhhhhhhhcCcceeEeCCCCCC-----
Q 017557 83 SKIKLRAHEARGLAAATVKDFG-GL-SFMERLLLCLTECDAIGFKTCREIEGAYCDCVESQFEKRVILAGPVLPE----- 155 (369)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~~~----- 155 (369)
...++..+++.++. . .++ .+ ....++......++++++||+.+||+++++.+++ . +++++|||+++.
T Consensus 166 -l~~~~~~dl~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~-~-~~v~~VGPl~~~~~~~~ 239 (456)
T PLN02210 166 -LPLLEVRDLPSFML--P-SGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMAD-L-KPVIPIGPLVSPFLLGD 239 (456)
T ss_pred -CCCCChhhCChhhh--c-CCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhh-c-CCEEEEcccCchhhcCc
Confidence 11134444554331 1 121 12 2223444455678999999999999999988776 3 579999999742
Q ss_pred CCCC----------CchhHHHhhhccCCCCceEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCc
Q 017557 156 PPAS----------VLEEEFEMLFSSFKAKSLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALP 225 (369)
Q Consensus 156 ~~~~----------~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp 225 (369)
.... ..+++|.+|+|.++++++|||||||....+.+++++++.+|+.++++|||+++... ....+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~~~~-----~~~~~ 314 (456)
T PLN02210 240 DEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIRPKE-----KAQNV 314 (456)
T ss_pred ccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEeCCc-----cccch
Confidence 1100 12467999999998889999999999989999999999999999999999997531 11234
Q ss_pred hhHHHHhcCCCeeEecccChHHhhcCCCccceeecCCCchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeec
Q 017557 226 EGFEERVKGRGFVHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERG 305 (369)
Q Consensus 226 ~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~ 305 (369)
..+.++...++..+.+|+||.+||+|+++++|||||||||++||+++|||||+||+++||+.||+++++.||+|+.+...
T Consensus 315 ~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~g~G~~l~~~ 394 (456)
T PLN02210 315 QVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMRND 394 (456)
T ss_pred hhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccHHHHHHHHHHhCeEEEEecc
Confidence 45666653234456799999999999999999999999999999999999999999999999999999856999999753
Q ss_pred CCCCccCHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHH
Q 017557 306 DEDGLFTRDGVCKAVKAVMDDDSEVGKDARQNHAELREFLIS----PGLENSYVDGFVQELH 363 (369)
Q Consensus 306 ~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~----~~~~~~~~~~~v~~l~ 363 (369)
+.++.+++++|+++|+++|. +++++++|+||++|++.+++ +|++.+++++||+++.
T Consensus 395 ~~~~~~~~~~l~~av~~~m~--~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~v~~~~ 454 (456)
T PLN02210 395 AVDGELKVEEVERCIEAVTE--GPAAADIRRRAAELKHVARLALAPGGSSARNLDLFISDIT 454 (456)
T ss_pred ccCCcCCHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 22346999999999999997 55577899999999998874 4778899999999875
No 18
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2.5e-53 Score=418.98 Aligned_cols=336 Identities=22% Similarity=0.288 Sum_probs=254.2
Q ss_pred CEEEECC-CCChHHHHHHhCCCeEEEeCchHHHHHhhhchhhhhcCCCCCccCCCC--CCCCCCCCccccCccccchhhh
Q 017557 21 NIVFFDF-TYWLPSLARKLGIKSIAFVTVSPATVGYLLSPERKLRDKFLTEADLLQ--PPQGFPPSKIKLRAHEARGLAA 97 (369)
Q Consensus 21 D~vI~D~-~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~p~~~~~~~~~~~~~~~~ 97 (369)
+|||+|+ ++|+.++|+++|||++.|++++++.+..+.+.+...........+.+. .+..+|+....++..+++....
T Consensus 114 ~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iPgl~~pl~~~dlp~~~~ 193 (481)
T PLN02554 114 AGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQMLYDEKKYDVSELEDSEVELDVPSLTRPYPVKCLPSVLL 193 (481)
T ss_pred EEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhhhhccccccCccccCCCCceeECCCCCCCCCHHHCCCccc
Confidence 8999999 999999999999999999999999988877654321110000000100 0112443101233344443321
Q ss_pred hcccCCCchHHHHHHHHhhccCceeeeccccchhhhhhhhhhhh--cCcceeEeCCCCC-CCC-C---CCchhHHHhhhc
Q 017557 98 ATVKDFGGLSFMERLLLCLTECDAIGFKTCREIEGAYCDCVESQ--FEKRVILAGPVLP-EPP-A---SVLEEEFEMLFS 170 (369)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~--~~~~~~~vGp~~~-~~~-~---~~~~~~~~~~l~ 170 (369)
. . .....+.+....+..++++++||+.+||+.+...+.+. ..|+++.|||++. ..+ . ...+++|.+||+
T Consensus 194 --~-~-~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~~l~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~wLd 269 (481)
T PLN02554 194 --S-K-EWLPLFLAQARRFREMKGILVNTVAELEPQALKFFSGSSGDLPPVYPVGPVLHLENSGDDSKDEKQSEILRWLD 269 (481)
T ss_pred --C-H-HHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhcccCCCCEEEeCCCccccccccccccccchHHHHHHh
Confidence 0 0 12233445556677899999999999999988877653 3368999999943 221 1 234568999999
Q ss_pred cCCCCceEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCC---------CccccCCchhHHHHhcCCCeeEec
Q 017557 171 SFKAKSLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGH---------DTIESALPEGFEERVKGRGFVHGG 241 (369)
Q Consensus 171 ~~~~~~~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~---------~~~~~~lp~~~~~~~~~~~~~v~~ 241 (369)
+++++++|||||||+...+.+++.+++.+|+.++++|||+++..... .+....+|++|.+++++ |+++.+
T Consensus 270 ~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~~-~g~v~~ 348 (481)
T PLN02554 270 EQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRTKD-IGKVIG 348 (481)
T ss_pred cCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEEEEcCCcccccccccccccchhhhCChHHHHHhcc-CceEEe
Confidence 99888999999999988999999999999999999999999753110 00112368999988765 456679
Q ss_pred ccChHHhhcCCCccceeecCCCchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecC-------CCCccCHH
Q 017557 242 WVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGD-------EDGLFTRD 314 (369)
Q Consensus 242 ~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~-------~~~~~~~~ 314 (369)
|+||.+||+|+++++|||||||||++||+++|||||+||+++||+.||+++.+.||+|+.+.... .++.++++
T Consensus 349 W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~~e 428 (481)
T PLN02554 349 WAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWRGDLLAGEMETVTAE 428 (481)
T ss_pred eCCHHHHhCCcccCcccccCccchHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEeeccccccccccccCeEcHH
Confidence 99999999999999999999999999999999999999999999999966444449999997410 12358999
Q ss_pred HHHHHHHHHhccCCcchHHHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHhc
Q 017557 315 GVCKAVKAVMDDDSEVGKDARQNHAELREFLIS----PGLENSYVDGFVQELHSL 365 (369)
Q Consensus 315 ~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~----~~~~~~~~~~~v~~l~~~ 365 (369)
+|.++|+++|.+ +++||+||+++++.+++ +|++.+++++||++++++
T Consensus 429 ~l~~av~~vm~~----~~~~r~~a~~l~~~~~~av~~gGss~~~l~~lv~~~~~~ 479 (481)
T PLN02554 429 EIERGIRCLMEQ----DSDVRKRVKEMSEKCHVALMDGGSSHTALKKFIQDVTKN 479 (481)
T ss_pred HHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhh
Confidence 999999999962 58999999999999884 477789999999999886
No 19
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=4.4e-53 Score=416.68 Aligned_cols=353 Identities=21% Similarity=0.276 Sum_probs=263.1
Q ss_pred HhhcHHHHHHHHhhc----------CCCEEEECC-CCChHHHHHHhCCCeEEEeCchHHHHHhhhchhhhhcCCC--CCc
Q 017557 4 MDLTEPAIEAIVRDI----------KPNIVFFDF-TYWLPSLARKLGIKSIAFVTVSPATVGYLLSPERKLRDKF--LTE 70 (369)
Q Consensus 4 ~~~~~~~l~~~l~~~----------~pD~vI~D~-~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 70 (369)
+..+.+++++.+++. +++|||+|+ ++|+.++|+++|||++.|++++++.+.++.+.+....... ...
T Consensus 93 ~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~~~~~~~~~~~~~~ 172 (475)
T PLN02167 93 VKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYLPERHRKTASEFDL 172 (475)
T ss_pred HHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHHHHhcccccccccc
Confidence 345556666666542 249999999 9999999999999999999999988777665432111110 000
Q ss_pred cCCCCCCCCCCCCccccCccccchhhhhcccCCCchHHHHHHHHhhccCceeeeccccchhhhhhhhhhhhc--CcceeE
Q 017557 71 ADLLQPPQGFPPSKIKLRAHEARGLAAATVKDFGGLSFMERLLLCLTECDAIGFKTCREIEGAYCDCVESQF--EKRVIL 148 (369)
Q Consensus 71 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~--~~~~~~ 148 (369)
.....+ ..+|+....++..+++...+ . .. ....+.+......+++.+++|||++||+++++.+++.. -|++++
T Consensus 173 ~~~~~~-~~iPgl~~~l~~~dlp~~~~--~-~~-~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~~~~~p~v~~ 247 (475)
T PLN02167 173 SSGEEE-LPIPGFVNSVPTKVLPPGLF--M-KE-SYEAWVEIAERFPEAKGILVNSFTELEPNAFDYFSRLPENYPPVYP 247 (475)
T ss_pred CCCCCe-eECCCCCCCCChhhCchhhh--C-cc-hHHHHHHHHHhhcccCEeeeccHHHHHHHHHHHHHhhcccCCeeEE
Confidence 000001 12343101133334443221 1 11 12333445556778999999999999999998886531 257999
Q ss_pred eCCCCCCCC--CCC----chhHHHhhhccCCCCceEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCC-Cccc
Q 017557 149 AGPVLPEPP--ASV----LEEEFEMLFSSFKAKSLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGH-DTIE 221 (369)
Q Consensus 149 vGp~~~~~~--~~~----~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~-~~~~ 221 (369)
|||++.... ... .+.+|.+||+.++++++|||||||+...+.+++.+++.+|+.++++|||+++..... ....
T Consensus 248 vGpl~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~flw~~~~~~~~~~~~~ 327 (475)
T PLN02167 248 VGPILSLKDRTSPNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELVGCRFLWSIRTNPAEYASPY 327 (475)
T ss_pred eccccccccccCCCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCcEEEEEecCcccccchh
Confidence 999986422 111 236799999999889999999999988999999999999999999999999853211 0012
Q ss_pred cCCchhHHHHhcCCCeeEecccChHHhhcCCCccceeecCCCchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEE
Q 017557 222 SALPEGFEERVKGRGFVHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVE 301 (369)
Q Consensus 222 ~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~ 301 (369)
..+|++|.+++++++ ++.+|+||.+||+|+++++|||||||||++||+++|||||+||+++||+.||+++.+.||+|+.
T Consensus 328 ~~lp~~~~er~~~rg-~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~ 406 (475)
T PLN02167 328 EPLPEGFMDRVMGRG-LVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMYAEQQLNAFTMVKELGLAVE 406 (475)
T ss_pred hhCChHHHHHhccCe-eeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEeccccccchhhHHHHHHHhCeeEE
Confidence 358999999987766 5559999999999999999999999999999999999999999999999999886555599999
Q ss_pred Eeec---CCCCccCHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHhcc
Q 017557 302 VERG---DEDGLFTRDGVCKAVKAVMDDDSEVGKDARQNHAELREFLIS----PGLENSYVDGFVQELHSLA 366 (369)
Q Consensus 302 l~~~---~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~----~~~~~~~~~~~v~~l~~~~ 366 (369)
+... +.++.+++++|.++|+++|.+ ++.||+||+++++.+++ +|++.+++++||+++...+
T Consensus 407 ~~~~~~~~~~~~~~~~~l~~av~~~m~~----~~~~r~~a~~~~~~~~~av~~gGsS~~~l~~~v~~i~~~~ 474 (475)
T PLN02167 407 LRLDYVSAYGEIVKADEIAGAVRSLMDG----EDVPRKKVKEIAEAARKAVMDGGSSFVAVKRFIDDLLGDH 474 (475)
T ss_pred eecccccccCCcccHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcC
Confidence 9642 112357999999999999972 35899999999998774 5888999999999998765
No 20
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=5.7e-53 Score=410.59 Aligned_cols=338 Identities=21% Similarity=0.353 Sum_probs=259.2
Q ss_pred HhhcHHHHHHHHhhc----C-CCEEEECC-CCChHHHHHHhCCCeEEEeCchHHHHHhhhchhhhhcCCCCCccCCCCCC
Q 017557 4 MDLTEPAIEAIVRDI----K-PNIVFFDF-TYWLPSLARKLGIKSIAFVTVSPATVGYLLSPERKLRDKFLTEADLLQPP 77 (369)
Q Consensus 4 ~~~~~~~l~~~l~~~----~-pD~vI~D~-~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (369)
.+.+.+++++++++. + ++|||+|+ .+|+.++|+++|||++.|++++++.+..+++..... . ..
T Consensus 86 ~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~~--------~---~~ 154 (455)
T PLN02152 86 ERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTGN--------N---SV 154 (455)
T ss_pred HHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhccC--------C---Ce
Confidence 345778888888763 3 49999999 999999999999999999999999888766543110 0 11
Q ss_pred CCCCCCccccCccccchhhhhcccCCC-chHHHHHHHHhhc--cCceeeeccccchhhhhhhhhhhhcCcceeEeCCCCC
Q 017557 78 QGFPPSKIKLRAHEARGLAAATVKDFG-GLSFMERLLLCLT--ECDAIGFKTCREIEGAYCDCVESQFEKRVILAGPVLP 154 (369)
Q Consensus 78 ~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~~ 154 (369)
..+|+ .+.++..+++.++.... ... ....+.+....+. .++.+++|||++||+.+++.++. .+++.|||+++
T Consensus 155 ~~iPg-lp~l~~~dlp~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~---~~v~~VGPL~~ 229 (455)
T PLN02152 155 FEFPN-LPSLEIRDLPSFLSPSN-TNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPN---IEMVAVGPLLP 229 (455)
T ss_pred eecCC-CCCCchHHCchhhcCCC-CchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhc---CCEEEEcccCc
Confidence 12343 11244555665442111 111 1233334444443 25799999999999999988765 26999999975
Q ss_pred CC---C-C--C-----CchhHHHhhhccCCCCceEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCC-----C
Q 017557 155 EP---P-A--S-----VLEEEFEMLFSSFKAKSLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGH-----D 218 (369)
Q Consensus 155 ~~---~-~--~-----~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~-----~ 218 (369)
.. . . + ..+.++.+|||++++++||||||||...++.+++++++.+|+.++++|||+++..... .
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~~~~~~~~~~ 309 (455)
T PLN02152 230 AEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDKLNREAKIEG 309 (455)
T ss_pred cccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecCccccccccc
Confidence 32 1 0 1 1134799999999888999999999999999999999999999999999999753110 0
Q ss_pred cc--ccCCchhHHHHhcCCCeeEecccChHHhhcCCCccceeecCCCchHHHHHHhCCcccccccccchhHHHHHHhhhc
Q 017557 219 TI--ESALPEGFEERVKGRGFVHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDL 296 (369)
Q Consensus 219 ~~--~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~ 296 (369)
.. .-.+|++|.+++++ |.++.+|+||.+||+|+++++|||||||||++||+++|||+|++|+++||+.||+++++.|
T Consensus 310 ~~~~~~~~~~~f~e~~~~-~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~ 388 (455)
T PLN02152 310 EEETEIEKIAGFRHELEE-VGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIW 388 (455)
T ss_pred ccccccccchhHHHhccC-CeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccccchHHHHHHHHHh
Confidence 00 11347888888755 4566799999999999999999999999999999999999999999999999999999988
Q ss_pred ceEEEEeecCCCCccCHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhc----CCCCHHHHHHHHHHH
Q 017557 297 KVGVEVERGDEDGLFTRDGVCKAVKAVMDDDSEVGKDARQNHAELREFLIS----PGLENSYVDGFVQEL 362 (369)
Q Consensus 297 g~G~~l~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~----~~~~~~~~~~~v~~l 362 (369)
|+|+.+..+. ++.++.++|+++|+++|+ ++ +..||+||+++++++++ +|++.+++++|++++
T Consensus 389 ~~G~~~~~~~-~~~~~~e~l~~av~~vm~--~~-~~~~r~~a~~~~~~~~~a~~~ggsS~~nl~~li~~i 454 (455)
T PLN02152 389 KTGVRVRENS-EGLVERGEIRRCLEAVME--EK-SVELRESAEKWKRLAIEAGGEGGSSDKNVEAFVKTL 454 (455)
T ss_pred CceEEeecCc-CCcCcHHHHHHHHHHHHh--hh-HHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 8888886432 335799999999999996 22 56799999999988875 477889999999986
No 21
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=3.1e-51 Score=402.58 Aligned_cols=346 Identities=22% Similarity=0.294 Sum_probs=264.6
Q ss_pred hhcHHHHHHHHhhc--CCCEEEECC-CCChHHHHHHhCCCeEEEeCchHHHHHhhhchhhhhcCC--CCCcc-CCCCCCC
Q 017557 5 DLTEPAIEAIVRDI--KPNIVFFDF-TYWLPSLARKLGIKSIAFVTVSPATVGYLLSPERKLRDK--FLTEA-DLLQPPQ 78 (369)
Q Consensus 5 ~~~~~~l~~~l~~~--~pD~vI~D~-~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~ 78 (369)
+.+.+.+++++++. ++||||+|. ++|+..+|+++|||++.|+++++..+..+.+........ +.... ....+..
T Consensus 92 ~~~~~~~~~~l~~~~~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (459)
T PLN02448 92 TKMEAPFEQLLDRLEPPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHFPVELSESGEERVD 171 (459)
T ss_pred HHhHHHHHHHHHhcCCCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCCCCccccccCCccc
Confidence 46778888888875 579999999 999999999999999999999987777665543222111 11100 0011112
Q ss_pred CCCCCccccCccccchhhhhcccCCC-chHHHHHHHHhhccCceeeeccccchhhhhhhhhhhhcCcceeEeCCCCCCCC
Q 017557 79 GFPPSKIKLRAHEARGLAAATVKDFG-GLSFMERLLLCLTECDAIGFKTCREIEGAYCDCVESQFEKRVILAGPVLPEPP 157 (369)
Q Consensus 79 ~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~ 157 (369)
++|+ ...++..+++.++. . ... ....+........+++.+++||+++||+.+++.+++.++++++.|||+.....
T Consensus 172 ~iPg-~~~l~~~dlp~~~~--~-~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~~~~iGP~~~~~~ 247 (459)
T PLN02448 172 YIPG-LSSTRLSDLPPIFH--G-NSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSKFPFPVYPIGPSIPYME 247 (459)
T ss_pred cCCC-CCCCChHHCchhhc--C-CchHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhhcCCceEEecCcccccc
Confidence 3554 11234444554331 1 111 23344444555667889999999999999999888777778999999975311
Q ss_pred C---------CCchhHHHhhhccCCCCceEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhH
Q 017557 158 A---------SVLEEEFEMLFSSFKAKSLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGF 228 (369)
Q Consensus 158 ~---------~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~ 228 (369)
. ...+.++.+|++.++++++|||||||....+.+++.+++++|+..+++|||+++.. ..++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~----------~~~~ 317 (459)
T PLN02448 248 LKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARGE----------ASRL 317 (459)
T ss_pred cCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcCc----------hhhH
Confidence 0 01124799999998889999999999988889999999999999999999987642 1133
Q ss_pred HHHhcCCCeeEecccChHHhhcCCCccceeecCCCchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecC-C
Q 017557 229 EERVKGRGFVHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGD-E 307 (369)
Q Consensus 229 ~~~~~~~~~~v~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~-~ 307 (369)
.++.. .|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++.||+|+.+.... .
T Consensus 318 ~~~~~-~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~~~~~~~~ 396 (459)
T PLN02448 318 KEICG-DMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWRVKREVGE 396 (459)
T ss_pred hHhcc-CCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEEeccccc
Confidence 33332 477788999999999999999999999999999999999999999999999999999999889999996431 1
Q ss_pred CCccCHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHhc
Q 017557 308 DGLFTRDGVCKAVKAVMDDDSEVGKDARQNHAELREFLIS----PGLENSYVDGFVQELHSL 365 (369)
Q Consensus 308 ~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~----~~~~~~~~~~~v~~l~~~ 365 (369)
++.+++++|+++|+++|.++++++++||+||+++++++++ +|++.+++++||+++++.
T Consensus 397 ~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v~~~~~~ 458 (459)
T PLN02448 397 ETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFIRDISQG 458 (459)
T ss_pred CCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcc
Confidence 2358999999999999974235678999999999998875 488899999999998864
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=1.8e-46 Score=371.49 Aligned_cols=317 Identities=15% Similarity=0.193 Sum_probs=250.2
Q ss_pred HHHHHHHHh--hcCCCEEEECC-CCChHHHHHHh-CCCeEEEeCchHHHHHhhhchhhhhcCCCCCccCCCCCCCCCCC-
Q 017557 8 EPAIEAIVR--DIKPNIVFFDF-TYWLPSLARKL-GIKSIAFVTVSPATVGYLLSPERKLRDKFLTEADLLQPPQGFPP- 82 (369)
Q Consensus 8 ~~~l~~~l~--~~~pD~vI~D~-~~~~~~~A~~l-giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~- 82 (369)
.+.++++|+ +.+||+||+|. ..|+..+|+++ |+|.|.++++.......... .+.+.+++++|.
T Consensus 123 ~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~~~~~~~------------gg~p~~~syvP~~ 190 (507)
T PHA03392 123 LPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLAENFETM------------GAVSRHPVYYPNL 190 (507)
T ss_pred CHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCchhHHHhh------------ccCCCCCeeeCCc
Confidence 456788887 67899999999 99999999999 99998887755432211110 113455667764
Q ss_pred ---CccccCccc-cchhhhh------cc---cCCC-chHHH-----HHHHHhhccCceeeeccccchhhhhhhhhhhhcC
Q 017557 83 ---SKIKLRAHE-ARGLAAA------TV---KDFG-GLSFM-----ERLLLCLTECDAIGFKTCREIEGAYCDCVESQFE 143 (369)
Q Consensus 83 ---~~~~~~~~~-~~~~~~~------~~---~~~~-~~~~~-----~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~ 143 (369)
....|++.+ +.++... .. ...+ ..+.. ....+..++.+++++|+.+.++++ ++++
T Consensus 191 ~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~l~~~~~l~lvns~~~~d~~------rp~~ 264 (507)
T PHA03392 191 WRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTIRELRNRVQLLFVNVHPVFDNN------RPVP 264 (507)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHHHHhCCcEEEEecCccccCC------CCCC
Confidence 234455543 3333210 00 0000 11111 113455667889999999999997 5899
Q ss_pred cceeEeCCCCCCC-CCCCchhHHHhhhccCCCCceEEEeeCCCcc---CCHHHHHHHHHHHHhcCCcEEEEECCCCCCCc
Q 017557 144 KRVILAGPVLPEP-PASVLEEEFEMLFSSFKAKSLIFCALGSECV---LKKDQFQELILGFELTGLPFFAALKPPTGHDT 219 (369)
Q Consensus 144 ~~~~~vGp~~~~~-~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~---~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~ 219 (369)
|++++|||++.+. ...++++++.+|++..+ +++|||||||... .+.+.++.++++++..+++|||.++....
T Consensus 265 p~v~~vGgi~~~~~~~~~l~~~l~~fl~~~~-~g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~~--- 340 (507)
T PHA03392 265 PSVQYLGGLHLHKKPPQPLDDYLEEFLNNST-NGVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEVE--- 340 (507)
T ss_pred CCeeeecccccCCCCCCCCCHHHHHHHhcCC-CcEEEEECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCcC---
Confidence 9999999998754 33568999999999864 5799999999864 46788999999999999999999875311
Q ss_pred cccCCchhHHHHhcCCCeeEecccChHHhhcCCCccceeecCCCchHHHHHHhCCcccccccccchhHHHHHHhhhcceE
Q 017557 220 IESALPEGFEERVKGRGFVHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVG 299 (369)
Q Consensus 220 ~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G 299 (369)
...+| +|+.+.+|+||.++|+|+++++||||||+||++||+++|||+|++|+++||+.||++++++ |+|
T Consensus 341 -~~~~p---------~Nv~i~~w~Pq~~lL~hp~v~~fItHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~-G~G 409 (507)
T PHA03392 341 -AINLP---------ANVLTQKWFPQRAVLKHKNVKAFVTQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVEL-GIG 409 (507)
T ss_pred -cccCC---------CceEEecCCCHHHHhcCCCCCEEEecCCcccHHHHHHcCCCEEECCCCccHHHHHHHHHHc-CcE
Confidence 11334 4999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred EEEeecCCCCccCHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhcc
Q 017557 300 VEVERGDEDGLFTRDGVCKAVKAVMDDDSEVGKDARQNHAELREFLISPGL-ENSYVDGFVQELHSLA 366 (369)
Q Consensus 300 ~~l~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~-~~~~~~~~v~~l~~~~ 366 (369)
+.++..+ +++++|.++|+++++ +++||+||+++++.+++++. ..+.+..++|++.+++
T Consensus 410 ~~l~~~~----~t~~~l~~ai~~vl~-----~~~y~~~a~~ls~~~~~~p~~~~~~av~~iE~v~r~~ 468 (507)
T PHA03392 410 RALDTVT----VSAAQLVLAIVDVIE-----NPKYRKNLKELRHLIRHQPMTPLHKAIWYTEHVIRNK 468 (507)
T ss_pred EEeccCC----cCHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC
Confidence 9999877 999999999999999 89999999999999999875 5677889999999987
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=2.3e-47 Score=381.50 Aligned_cols=314 Identities=19% Similarity=0.244 Sum_probs=207.7
Q ss_pred HHHHHHhhcCCCEEEECC-CCChHHHHHHhCCCeEEEeCchHHHHHhhhchhhhhcCCCCCccCCCCCCCCCCC----Cc
Q 017557 10 AIEAIVRDIKPNIVFFDF-TYWLPSLARKLGIKSIAFVTVSPATVGYLLSPERKLRDKFLTEADLLQPPQGFPP----SK 84 (369)
Q Consensus 10 ~l~~~l~~~~pD~vI~D~-~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~----~~ 84 (369)
.+.+.+++.++|++|+|. .+|+..+|+++|+|.+.+.+......... ...+.+.+++++|. ..
T Consensus 110 ~l~~~l~~~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~~~~~~~~------------~~~g~p~~psyvP~~~s~~~ 177 (500)
T PF00201_consen 110 ELMEQLKSEKFDLVISDAFDPCGLALAHYLGIPVIIISSSTPMYDLSS------------FSGGVPSPPSYVPSMFSDFS 177 (500)
T ss_dssp TSTTHHHHHHHCT-EEEEEESSHHHHHHHHHHTHHHHHHCCSCSCCTC------------CTSCCCTSTTSTTCBCCCSG
T ss_pred HHHHHHHhhccccceEeeccchhHHHHHHhcCCeEEEecccccchhhh------------hccCCCCChHHhccccccCC
Confidence 344556666899999999 88999999999999987654332211000 00123445556664 12
Q ss_pred cccCccc-cchhhh----------hcccCCC-----chHHHHHHHHhhccCceeeeccccchhhhhhhhhhhhcCcceeE
Q 017557 85 IKLRAHE-ARGLAA----------ATVKDFG-----GLSFMERLLLCLTECDAIGFKTCREIEGAYCDCVESQFEKRVIL 148 (369)
Q Consensus 85 ~~~~~~~-~~~~~~----------~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~ 148 (369)
..|.+.+ +.+++. ... ..+ ....-....+.+.+++++++|+.+.++.| ++++|++++
T Consensus 178 ~~msf~~Ri~N~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~l~ns~~~ld~p------rp~~p~v~~ 250 (500)
T PF00201_consen 178 DRMSFWQRIKNFLFYLYFRFIFRYFFS-PQDKLYKKYFGFPFSFRELLSNASLVLINSHPSLDFP------RPLLPNVVE 250 (500)
T ss_dssp TTSSSST--TTSHHHHHHHHHHHHGGG-S-TTS-EEESS-GGGCHHHHHHHHHCCSSTEEE----------HHHHCTSTT
T ss_pred Cccchhhhhhhhhhhhhhccccccchh-hHHHHHhhhcccccccHHHHHHHHHHhhhccccCcCC------cchhhcccc
Confidence 2344433 222211 001 100 00000122444556788999999999876 467789999
Q ss_pred eCCCCCCCCCCCchhHHHhhhccCCCCceEEEeeCCCccCCH-HHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchh
Q 017557 149 AGPVLPEPPASVLEEEFEMLFSSFKAKSLIFCALGSECVLKK-DQFQELILGFELTGLPFFAALKPPTGHDTIESALPEG 227 (369)
Q Consensus 149 vGp~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~-~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~ 227 (369)
||+++..++ .++++++..|++...++++|||||||.....+ +..++++++|+..+++|||+++.. ....+|
T Consensus 251 vGgl~~~~~-~~l~~~~~~~~~~~~~~~vv~vsfGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~-----~~~~l~-- 322 (500)
T PF00201_consen 251 VGGLHIKPA-KPLPEELWNFLDSSGKKGVVYVSFGSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGE-----PPENLP-- 322 (500)
T ss_dssp GCGC-S-----TCHHHHHHHTSTTTTTEEEEEE-TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCS-----HGCHHH--
T ss_pred cCccccccc-cccccccchhhhccCCCCEEEEecCcccchhHHHHHHHHHHHHhhCCCccccccccc-----cccccc--
Confidence 999987654 45899999999985668899999999986444 558889999999999999998763 223333
Q ss_pred HHHHhcCCCeeEecccChHHhhcCCCccceeecCCCchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecCC
Q 017557 228 FEERVKGRGFVHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDE 307 (369)
Q Consensus 228 ~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~ 307 (369)
+|+++.+|+||.++|+|+++++||||||+||++||+++|||+|++|+++||+.||++++++ |+|+.++..+
T Consensus 323 -------~n~~~~~W~PQ~~lL~hp~v~~fitHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~-G~g~~l~~~~- 393 (500)
T PF00201_consen 323 -------KNVLIVKWLPQNDLLAHPRVKLFITHGGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEEK-GVGVVLDKND- 393 (500)
T ss_dssp -------TTEEEESS--HHHHHTSTTEEEEEES--HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHT-TSEEEEGGGC-
T ss_pred -------ceEEEeccccchhhhhcccceeeeeccccchhhhhhhccCCccCCCCcccCCccceEEEEE-eeEEEEEecC-
Confidence 4999999999999999999999999999999999999999999999999999999999999 9999999887
Q ss_pred CCccCHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHhccc
Q 017557 308 DGLFTRDGVCKAVKAVMDDDSEVGKDARQNHAELREFLISPGLE-NSYVDGFVQELHSLAD 367 (369)
Q Consensus 308 ~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~-~~~~~~~v~~l~~~~~ 367 (369)
+|.++|.++|+++|+ |++|++||+++++++++++.. .+.+..++|++.++++
T Consensus 394 ---~~~~~l~~ai~~vl~-----~~~y~~~a~~ls~~~~~~p~~p~~~~~~~ie~v~~~~~ 446 (500)
T PF00201_consen 394 ---LTEEELRAAIREVLE-----NPSYKENAKRLSSLFRDRPISPLERAVWWIEYVARHGG 446 (500)
T ss_dssp ----SHHHHHHHHHHHHH-----SHHHHHHHHHHHHTTT----------------------
T ss_pred ---CcHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999 899999999999999998665 4557999999999875
No 24
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=6.6e-37 Score=305.76 Aligned_cols=311 Identities=20% Similarity=0.250 Sum_probs=215.1
Q ss_pred CCCEEEECC-CCChHHHHHHhC-CCeEEEeCchHHHHHhhhchhhhhcCCCCCccCCCCCCCCCCCC-----ccccCccc
Q 017557 19 KPNIVFFDF-TYWLPSLARKLG-IKSIAFVTVSPATVGYLLSPERKLRDKFLTEADLLQPPQGFPPS-----KIKLRAHE 91 (369)
Q Consensus 19 ~pD~vI~D~-~~~~~~~A~~lg-iP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-----~~~~~~~~ 91 (369)
++|++|+|. ..|...+|...+ |+..++.+..+.......+.+ ..++|.. ...+.+.+
T Consensus 114 ~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~----------------~~~~p~~~~~~~~~~~~~~~ 177 (496)
T KOG1192|consen 114 KFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSP----------------LSYVPSPFSLSSGDDMSFPE 177 (496)
T ss_pred CccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCc----------------ccccCcccCccccccCcHHH
Confidence 399999999 788888887775 999999888877654433211 1122210 00111111
Q ss_pred -cchhhh-----hccc-CCC-c-hHHH-----------HHHHHhhccCceeeeccccchhhhhhhhhhhhcCcceeEeCC
Q 017557 92 -ARGLAA-----ATVK-DFG-G-LSFM-----------ERLLLCLTECDAIGFKTCREIEGAYCDCVESQFEKRVILAGP 151 (369)
Q Consensus 92 -~~~~~~-----~~~~-~~~-~-~~~~-----------~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~vGp 151 (369)
..++.. .... ... . .... ....+.+.+++..++|+...++.+ .....+++++|||
T Consensus 178 ~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln~~~~~~~~-----~~~~~~~v~~IG~ 252 (496)
T KOG1192|consen 178 RVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLNSNPLLDFE-----PRPLLPKVIPIGP 252 (496)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEccCcccCCC-----CCCCCCCceEECc
Confidence 111110 0000 000 0 0000 011133344445555555444432 2335789999999
Q ss_pred CCCCCCCCCchhHHHhhhccCCCC--ceEEEeeCCCc---cCCHHHHHHHHHHHHhc-CCcEEEEECCCCCCCccccCCc
Q 017557 152 VLPEPPASVLEEEFEMLFSSFKAK--SLIFCALGSEC---VLKKDQFQELILGFELT-GLPFFAALKPPTGHDTIESALP 225 (369)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~~~~~~--~~v~vs~GS~~---~~~~~~~~~~~~~l~~~-~~~~i~~~~~~~~~~~~~~~lp 225 (369)
++....... ...+.+|++..+.. ++|||||||++ .++.++..+++.+|+.. +++|+|++.... ...++
T Consensus 253 l~~~~~~~~-~~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~~~~~FiW~~~~~~-----~~~~~ 326 (496)
T KOG1192|consen 253 LHVKDSKQK-SPLPLEWLDILDESRHSVVYISFGSMVNSADLPEEQKKELAKALESLQGVTFLWKYRPDD-----SIYFP 326 (496)
T ss_pred EEecCcccc-ccccHHHHHHHhhccCCeEEEECCcccccccCCHHHHHHHHHHHHhCCCceEEEEecCCc-----chhhh
Confidence 998733211 11344555554444 79999999998 68999999999999988 889999998642 11133
Q ss_pred hhHHHHhcCCCeeEecccChHHh-hcCCCccceeecCCCchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEee
Q 017557 226 EGFEERVKGRGFVHGGWVQQQLI-LKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVER 304 (369)
Q Consensus 226 ~~~~~~~~~~~~~v~~~~pq~~l-L~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~ 304 (369)
+++.++ .+.|+...+|+||.++ |+|+++++|||||||||++|++++|||+|++|+++||+.||+++++. |.|..+.+
T Consensus 327 ~~~~~~-~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~-g~~~v~~~ 404 (496)
T KOG1192|consen 327 EGLPNR-GRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYSGVPMVCVPLFGDQPLNARLLVRH-GGGGVLDK 404 (496)
T ss_pred hcCCCC-CcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHHhcCCceecCCccccchhHHHHHHhC-CCEEEEeh
Confidence 343332 3458888899999998 59999999999999999999999999999999999999999999999 55555555
Q ss_pred cCCCCccCHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhccc
Q 017557 305 GDEDGLFTRDGVCKAVKAVMDDDSEVGKDARQNHAELREFLISPGLENSYVDGFVQELHSLAD 367 (369)
Q Consensus 305 ~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~v~~l~~~~~ 367 (369)
.+ ++.+.+.+++.++++ +++|+++|+++++.+++++...+.+..+++++.++++
T Consensus 405 ~~----~~~~~~~~~~~~il~-----~~~y~~~~~~l~~~~~~~p~~~~~~~~~~e~~~~~~~ 458 (496)
T KOG1192|consen 405 RD----LVSEELLEAIKEILE-----NEEYKEAAKRLSEILRDQPISPELAVKWVEFVARHGG 458 (496)
T ss_pred hh----cCcHHHHHHHHHHHc-----ChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC
Confidence 44 666669999999999 8999999999999999988777667888888888664
No 25
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=3.1e-34 Score=278.29 Aligned_cols=305 Identities=19% Similarity=0.196 Sum_probs=210.3
Q ss_pred HHHHHHHHhhcCCCEEEECC-CCChHHHHHHhCCCeEEEeCchHHHHHhhhchhhhhcCCCCCccCCCCCCCCCCCCccc
Q 017557 8 EPAIEAIVRDIKPNIVFFDF-TYWLPSLARKLGIKSIAFVTVSPATVGYLLSPERKLRDKFLTEADLLQPPQGFPPSKIK 86 (369)
Q Consensus 8 ~~~l~~~l~~~~pD~vI~D~-~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 86 (369)
.+.+.+.+++.+||+||+|. ++++..+|+++|||+|.+++....... .+... + +............
T Consensus 81 ~~~l~~~~~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~---~~~~~----~------~~~~~~~~~~~~~ 147 (392)
T TIGR01426 81 LPQLEEAYKGDRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANEE---FEEMV----S------PAGEGSAEEGAIA 147 (392)
T ss_pred HHHHHHHhcCCCCCEEEECCccHHHHHHHHHhCCCEEEEehhhccccc---ccccc----c------ccchhhhhhhccc
Confidence 34556666667999999999 889999999999999998655432100 00000 0 0000000000000
Q ss_pred cC-cccc-chhhhhcccCCC-chHHHHHHHHhhccCceeeeccccchhhhhhhhhhhhcCcceeEeCCCCCCCCCCCchh
Q 017557 87 LR-AHEA-RGLAAATVKDFG-GLSFMERLLLCLTECDAIGFKTCREIEGAYCDCVESQFEKRVILAGPVLPEPPASVLEE 163 (369)
Q Consensus 87 ~~-~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~ 163 (369)
.. ...+ ..+...+. ..+ .......+ .....+..+..+.+.|+++ ...|++++++|||+......
T Consensus 148 ~~~~~~~~~~~~~~r~-~~gl~~~~~~~~--~~~~~~~~l~~~~~~l~~~-----~~~~~~~~~~~Gp~~~~~~~----- 214 (392)
T TIGR01426 148 ERGLAEYVARLSALLE-EHGITTPPVEFL--AAPRRDLNLVYTPKAFQPA-----GETFDDSFTFVGPCIGDRKE----- 214 (392)
T ss_pred cchhHHHHHHHHHHHH-HhCCCCCCHHHH--hcCCcCcEEEeCChHhCCC-----ccccCCCeEEECCCCCCccc-----
Confidence 00 0000 01111111 111 00001111 1123344566666666553 25688999999998865321
Q ss_pred HHHhhhccCCCCceEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhcCCCeeEeccc
Q 017557 164 EFEMLFSSFKAKSLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGRGFVHGGWV 243 (369)
Q Consensus 164 ~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~ 243 (369)
...|....+++++|||||||+.......++++++++...+++++|..+...... ....+ +.|+.+.+|+
T Consensus 215 -~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~~~-~~~~~---------~~~v~~~~~~ 283 (392)
T TIGR01426 215 -DGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVDPA-DLGEL---------PPNVEVRQWV 283 (392)
T ss_pred -cCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCChh-HhccC---------CCCeEEeCCC
Confidence 123776666788999999998766667888899999988999999887542111 01112 3589999999
Q ss_pred ChHHhhcCCCccceeecCCCchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHHH
Q 017557 244 QQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAV 323 (369)
Q Consensus 244 pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~l 323 (369)
||.++|+++++ +|||||+||++|++++|+|+|++|...||+.||+++++. |+|+.+...+ +++++|.++|+++
T Consensus 284 p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~-g~g~~l~~~~----~~~~~l~~ai~~~ 356 (392)
T TIGR01426 284 PQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAEL-GLGRHLPPEE----VTAEKLREAVLAV 356 (392)
T ss_pred CHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHHC-CCEEEecccc----CCHHHHHHHHHHH
Confidence 99999999998 999999999999999999999999999999999999999 9999998776 8999999999999
Q ss_pred hccCCcchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 017557 324 MDDDSEVGKDARQNHAELREFLISPGLENSYVDGFVQE 361 (369)
Q Consensus 324 l~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~v~~ 361 (369)
|. +++|+++++++++.++..++..++++.+.+.
T Consensus 357 l~-----~~~~~~~~~~l~~~~~~~~~~~~aa~~i~~~ 389 (392)
T TIGR01426 357 LS-----DPRYAERLRKMRAEIREAGGARRAADEIEGF 389 (392)
T ss_pred hc-----CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 98 7899999999999999777666555555443
No 26
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=99.98 E-value=3.1e-31 Score=257.92 Aligned_cols=291 Identities=15% Similarity=0.131 Sum_probs=193.6
Q ss_pred cHHHHHHHHhhcCCCEEEECC-CCChHHHHHHhCCCeEEEeCchHHHHHhhhchhhhhcCCCCCccCCCCCCCCCCCCcc
Q 017557 7 TEPAIEAIVRDIKPNIVFFDF-TYWLPSLARKLGIKSIAFVTVSPATVGYLLSPERKLRDKFLTEADLLQPPQGFPPSKI 85 (369)
Q Consensus 7 ~~~~l~~~l~~~~pD~vI~D~-~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 85 (369)
+...+.+.+++.+||+||+|. .+++..+|+++|||++.++++++...... +++. +.
T Consensus 92 ~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~-------------------~~~~-~~--- 148 (401)
T cd03784 92 MLDDLVAAARDWGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAF-------------------PPPL-GR--- 148 (401)
T ss_pred HHHHHHHHhcccCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccC-------------------CCcc-ch---
Confidence 333445555557999999998 88999999999999999988764421100 0000 10
Q ss_pred ccCccccchhhhhcccCCC-chHHHHHHHHhhc---------cCceeeeccccchhhhhhhhhhhhcCcceeEeC-CCCC
Q 017557 86 KLRAHEARGLAAATVKDFG-GLSFMERLLLCLT---------ECDAIGFKTCREIEGAYCDCVESQFEKRVILAG-PVLP 154 (369)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---------~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~vG-p~~~ 154 (369)
. ............ ... ...........+. ..+..+....+.+.+ ....++++..++| ++..
T Consensus 149 -~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~~~ 220 (401)
T cd03784 149 -A-NLRLYALLEAEL-WQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSPAVLP-----PPPDWPRFDLVTGYGFRD 220 (401)
T ss_pred -H-HHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecCcccCC-----CCCCccccCcEeCCCCCC
Confidence 0 000000000000 000 0011111111111 111222222222221 2245777777886 4443
Q ss_pred CCCCCCchhHHHhhhccCCCCceEEEeeCCCccCCH-HHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhc
Q 017557 155 EPPASVLEEEFEMLFSSFKAKSLIFCALGSECVLKK-DQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVK 233 (369)
Q Consensus 155 ~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~-~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~ 233 (369)
.+.....+.++..|++. ++++|||+|||+..... ..+..+++++...+.++||+++..... ...+
T Consensus 221 ~~~~~~~~~~~~~~~~~--~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~~g~~~~~---~~~~--------- 286 (401)
T cd03784 221 VPYNGPPPPELWLFLAA--GRPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAILSLGWGGLG---AEDL--------- 286 (401)
T ss_pred CCCCCCCCHHHHHHHhC--CCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEEEccCcccc---ccCC---------
Confidence 33333456778888876 35699999999987444 567789999988899999998865211 0122
Q ss_pred CCCeeEecccChHHhhcCCCccceeecCCCchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecCCCCccCH
Q 017557 234 GRGFVHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGLFTR 313 (369)
Q Consensus 234 ~~~~~v~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~ 313 (369)
++|+++.+|+||.++|.++++ ||||||+||++|++++|||+|++|+..||+.||+++++. |+|+.+...+ +++
T Consensus 287 ~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~~-G~g~~l~~~~----~~~ 359 (401)
T cd03784 287 PDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAEL-GAGPALDPRE----LTA 359 (401)
T ss_pred CCceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHHC-CCCCCCCccc----CCH
Confidence 359999999999999999999 999999999999999999999999999999999999999 9999998776 899
Q ss_pred HHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhcCCCCHHHH
Q 017557 314 DGVCKAVKAVMDDDSEVGKDARQNHAELREFLISPGLENSYV 355 (369)
Q Consensus 314 ~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~ 355 (369)
+.|.++|+++++ ++ ++++++++++.+++..+..+.+
T Consensus 360 ~~l~~al~~~l~-----~~-~~~~~~~~~~~~~~~~g~~~~~ 395 (401)
T cd03784 360 ERLAAALRRLLD-----PP-SRRRAAALLRRIREEDGVPSAA 395 (401)
T ss_pred HHHHHHHHHHhC-----HH-HHHHHHHHHHHHHhccCHHHHH
Confidence 999999999997 44 5666777777776554444333
No 27
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=99.97 E-value=1.8e-30 Score=250.99 Aligned_cols=191 Identities=18% Similarity=0.262 Sum_probs=160.2
Q ss_pred cCcceeEeCCCCCCCCCCCchhHHHhhhccCCCCceEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccc
Q 017557 142 FEKRVILAGPVLPEPPASVLEEEFEMLFSSFKAKSLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGHDTIE 221 (369)
Q Consensus 142 ~~~~~~~vGp~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~ 221 (369)
+|....++||+...... ++..| ...++++||+|+||.... .+.++.+++++...+.++|+.++.. +. ..
T Consensus 211 ~p~~~~~~~~~~~~~~~-----~~~~~--~~~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~~-~~--~~ 279 (406)
T COG1819 211 LPFIGPYIGPLLGEAAN-----ELPYW--IPADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGGA-RD--TL 279 (406)
T ss_pred CCCCcCccccccccccc-----cCcch--hcCCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEecccc-cc--cc
Confidence 45566777887765432 22223 234577999999999876 7888899999999999999998762 11 23
Q ss_pred cCCchhHHHHhcCCCeeEecccChHHhhcCCCccceeecCCCchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEE
Q 017557 222 SALPEGFEERVKGRGFVHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVE 301 (369)
Q Consensus 222 ~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~ 301 (369)
..+|. |+.+.+|+||..+|.++++ ||||||+||++||+++|||+|++|...||+.||.++++. |+|+.
T Consensus 280 ~~~p~---------n~~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~-G~G~~ 347 (406)
T COG1819 280 VNVPD---------NVIVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEEL-GAGIA 347 (406)
T ss_pred ccCCC---------ceEEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHHHHc-CCcee
Confidence 45554 9999999999999999999 999999999999999999999999999999999999999 99999
Q ss_pred EeecCCCCccCHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Q 017557 302 VERGDEDGLFTRDGVCKAVKAVMDDDSEVGKDARQNHAELREFLISPGLENSYVDGFVQELHSL 365 (369)
Q Consensus 302 l~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~v~~l~~~ 365 (369)
+..+. ++.+.++++|+++|+ ++.|+++++++++.+++.++ .+.++++++++.+.
T Consensus 348 l~~~~----l~~~~l~~av~~vL~-----~~~~~~~~~~~~~~~~~~~g-~~~~a~~le~~~~~ 401 (406)
T COG1819 348 LPFEE----LTEERLRAAVNEVLA-----DDSYRRAAERLAEEFKEEDG-PAKAADLLEEFARE 401 (406)
T ss_pred cCccc----CCHHHHHHHHHHHhc-----CHHHHHHHHHHHHHhhhccc-HHHHHHHHHHHHhc
Confidence 99877 999999999999999 89999999999999998877 55566666665444
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.82 E-value=1.7e-18 Score=165.24 Aligned_cols=174 Identities=17% Similarity=0.184 Sum_probs=123.5
Q ss_pred cceeEeCCCCCCCCCCCchhHHHhhhccCCCCceEEEeeCCCccCCH-HHHHHHHHHHHhcCCcEEEEECCCCCCCcccc
Q 017557 144 KRVILAGPVLPEPPASVLEEEFEMLFSSFKAKSLIFCALGSECVLKK-DQFQELILGFELTGLPFFAALKPPTGHDTIES 222 (369)
Q Consensus 144 ~~~~~vGp~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~-~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~ 222 (369)
.+++++|+-..........+...+.+.-.+++++|+|..||++.... +.+.+++..+. .+++++|++|.+. .+
T Consensus 154 ~k~~~tG~Pvr~~~~~~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~-~~~~vv~~~G~~~-----~~ 227 (352)
T PRK12446 154 EKVIYTGSPVREEVLKGNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELL-LKYQIVHLCGKGN-----LD 227 (352)
T ss_pred CCeEEECCcCCcccccccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhc-cCcEEEEEeCCch-----HH
Confidence 46889995543322111122222233334557799999999997554 33555555553 2488999988641 11
Q ss_pred CCchhHHHHhcCCCeeEeccc-C-hHHhhcCCCccceeecCCCchHHHHHHhCCcccccccc-----cchhHHHHHHhhh
Q 017557 223 ALPEGFEERVKGRGFVHGGWV-Q-QQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNV-----GDQIINSRLMGED 295 (369)
Q Consensus 223 ~lp~~~~~~~~~~~~~v~~~~-p-q~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~P~~-----~DQ~~na~~v~~~ 295 (369)
. .. .. ..++.+.+|+ + ..++++++++ +|||||.+|+.|++++|+|+|.+|+. .||..||+++++.
T Consensus 228 ~---~~-~~--~~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~ 299 (352)
T PRK12446 228 D---SL-QN--KEGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQ 299 (352)
T ss_pred H---HH-hh--cCCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHC
Confidence 0 00 00 1255566887 4 4569999999 99999999999999999999999984 4899999999999
Q ss_pred cceEEEEeecCCCCccCHHHHHHHHHHHhccCCcchHHHHHHHHH
Q 017557 296 LKVGVEVERGDEDGLFTRDGVCKAVKAVMDDDSEVGKDARQNHAE 340 (369)
Q Consensus 296 ~g~G~~l~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~ 340 (369)
|+|..+...+ ++++.|.+++.+++++ .+.|++++++
T Consensus 300 -g~~~~l~~~~----~~~~~l~~~l~~ll~~----~~~~~~~~~~ 335 (352)
T PRK12446 300 -GYASVLYEED----VTVNSLIKHVEELSHN----NEKYKTALKK 335 (352)
T ss_pred -CCEEEcchhc----CCHHHHHHHHHHHHcC----HHHHHHHHHH
Confidence 9999998777 9999999999999972 3456665544
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.81 E-value=9.6e-19 Score=164.84 Aligned_cols=229 Identities=16% Similarity=0.191 Sum_probs=154.0
Q ss_pred cHHHHHHHHhhcCCCEEEECCCCChHHHHHHhCCCeEEEeCchHHHHHhhhchhhhhcCCCCCccCCCCCCCCCCCCccc
Q 017557 7 TEPAIEAIVRDIKPNIVFFDFTYWLPSLARKLGIKSIAFVTVSPATVGYLLSPERKLRDKFLTEADLLQPPQGFPPSKIK 86 (369)
Q Consensus 7 ~~~~l~~~l~~~~pD~vI~D~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 86 (369)
....+.+.+++.+||+||+|..+.+..+|+..|||++.+........ +..+++.
T Consensus 82 ~~~~~~~~l~~~~pDlVIsD~~~~~~~aa~~~giP~i~i~~~~~~~~----------------------~~~~~~~---- 135 (318)
T PF13528_consen 82 RIRREIRWLREFRPDLVISDFYPLAALAARRAGIPVIVISNQYWFLH----------------------PNFWLPW---- 135 (318)
T ss_pred HHHHHHHHHHhcCCCEEEEcChHHHHHHHHhcCCCEEEEEehHHccc----------------------ccCCcch----
Confidence 33455667777899999999966678999999999999887765420 0011110
Q ss_pred cCccccchhhhhcccCCCchHHHHHHHH--hhccCceeeeccccchhhhhhhhhhhhcCcceeEeCCCCCCCCCCCchhH
Q 017557 87 LRAHEARGLAAATVKDFGGLSFMERLLL--CLTECDAIGFKTCREIEGAYCDCVESQFEKRVILAGPVLPEPPASVLEEE 164 (369)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~ 164 (369)
. ..+. ..+.++.. ....++..+.-++. . + .....++.++||+.........
T Consensus 136 ---~--~~~~----------~~~~~~~~~~~~~~~~~~l~~~~~-~--~------~~~~~~~~~~~p~~~~~~~~~~--- 188 (318)
T PF13528_consen 136 ---D--QDFG----------RLIERYIDRYHFPPADRRLALSFY-P--P------LPPFFRVPFVGPIIRPEIRELP--- 188 (318)
T ss_pred ---h--hhHH----------HHHHHhhhhccCCcccceecCCcc-c--c------ccccccccccCchhcccccccC---
Confidence 0 0000 11111111 13334444544443 1 1 0112346678988765432210
Q ss_pred HHhhhccCCCCceEEEeeCCCccCCHHHHHHHHHHHHhcC-CcEEEEECCCCCCCccccCCchhHHHHhcCCCeeEeccc
Q 017557 165 FEMLFSSFKAKSLIFCALGSECVLKKDQFQELILGFELTG-LPFFAALKPPTGHDTIESALPEGFEERVKGRGFVHGGWV 243 (369)
Q Consensus 165 ~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~~l~~~~-~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~ 243 (369)
..+++.|+|+||+.... .+++++...+ +++++. +... ... ..+|+.+.+|.
T Consensus 189 -------~~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~~-----~~~---------~~~ni~~~~~~ 240 (318)
T PF13528_consen 189 -------PEDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPNA-----ADP---------RPGNIHVRPFS 240 (318)
T ss_pred -------CCCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCCc-----ccc---------cCCCEEEeecC
Confidence 12355899999988643 5556665544 677776 5431 011 13599998876
Q ss_pred --ChHHhhcCCCccceeecCCCchHHHHHHhCCccccccc--ccchhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHH
Q 017557 244 --QQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPN--VGDQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKA 319 (369)
Q Consensus 244 --pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~P~--~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~a 319 (369)
...++|+.+++ +|||||+||++|++++|+|+|++|. +.||..||+.+++. |+|+.++..+ ++++.|+++
T Consensus 241 ~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~-G~~~~~~~~~----~~~~~l~~~ 313 (318)
T PF13528_consen 241 TPDFAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEEL-GLGIVLSQED----LTPERLAEF 313 (318)
T ss_pred hHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHC-CCeEEccccc----CCHHHHHHH
Confidence 44669999999 9999999999999999999999999 78999999999999 9999998776 999999999
Q ss_pred HHHH
Q 017557 320 VKAV 323 (369)
Q Consensus 320 i~~l 323 (369)
|+++
T Consensus 314 l~~~ 317 (318)
T PF13528_consen 314 LERL 317 (318)
T ss_pred HhcC
Confidence 9864
No 30
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.74 E-value=3.8e-16 Score=147.98 Aligned_cols=135 Identities=13% Similarity=0.222 Sum_probs=109.9
Q ss_pred CCceEEEeeCCCccCCH-HHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhcCCC-eeEecccChH-Hhhc
Q 017557 174 AKSLIFCALGSECVLKK-DQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGRG-FVHGGWVQQQ-LILK 250 (369)
Q Consensus 174 ~~~~v~vs~GS~~~~~~-~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~-~~v~~~~pq~-~lL~ 250 (369)
++++|+|..||++...- +.+.+++..+.+ ++.+++++|.+. .+.......+.| +.+.+|.++. .+|+
T Consensus 182 ~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~~---------~~~~~~~~~~~~~~~v~~f~~dm~~~~~ 251 (357)
T COG0707 182 DKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGKND---------LEELKSAYNELGVVRVLPFIDDMAALLA 251 (357)
T ss_pred CCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCcch---------HHHHHHHHhhcCcEEEeeHHhhHHHHHH
Confidence 57799999999997543 445556666644 678888887641 123333333345 7888898765 5999
Q ss_pred CCCccceeecCCCchHHHHHHhCCcccccccc-c---chhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHHHhc
Q 017557 251 HPSVGCFVTHCGSGSLSEAMVNECQLVLLPNV-G---DQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAVMD 325 (369)
Q Consensus 251 ~~~~~~~ItHgG~~s~~Eal~~GvP~i~~P~~-~---DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ll~ 325 (369)
.+++ +||++|++|+.|.++.|+|+|.+|+. + ||..||+.++++ |+|+.++..+ +|.+.+.+.|.+++.
T Consensus 252 ~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~-gaa~~i~~~~----lt~~~l~~~i~~l~~ 323 (357)
T COG0707 252 AADL--VISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKA-GAALVIRQSE----LTPEKLAELILRLLS 323 (357)
T ss_pred hccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhC-CCEEEecccc----CCHHHHHHHHHHHhc
Confidence 9999 99999999999999999999999983 3 899999999999 9999999988 999999999999998
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.72 E-value=3.8e-16 Score=147.53 Aligned_cols=122 Identities=15% Similarity=0.180 Sum_probs=88.1
Q ss_pred CceEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhcCCCeeEecccC--hHHhhcCC
Q 017557 175 KSLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGRGFVHGGWVQ--QQLILKHP 252 (369)
Q Consensus 175 ~~~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~p--q~~lL~~~ 252 (369)
++.|+|.+|+... ..+++++...+. +.++++.... ....++ .|+.+.+|.| ..+.|..+
T Consensus 188 ~~~iLv~~g~~~~------~~l~~~l~~~~~-~~~i~~~~~~---~~~~~~---------~~v~~~~~~~~~~~~~l~~a 248 (321)
T TIGR00661 188 EDYILVYIGFEYR------YKILELLGKIAN-VKFVCYSYEV---AKNSYN---------ENVEIRRITTDNFKELIKNA 248 (321)
T ss_pred CCcEEEECCcCCH------HHHHHHHHhCCC-eEEEEeCCCC---CccccC---------CCEEEEECChHHHHHHHHhC
Confidence 4578888888652 345666654442 2333222110 011222 4888889997 45677888
Q ss_pred CccceeecCCCchHHHHHHhCCccccccccc--chhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHHHhc
Q 017557 253 SVGCFVTHCGSGSLSEAMVNECQLVLLPNVG--DQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAVMD 325 (369)
Q Consensus 253 ~~~~~ItHgG~~s~~Eal~~GvP~i~~P~~~--DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ll~ 325 (369)
++ +|||||++|++|++++|+|+|.+|... ||..||+.+++. |+|+.++..+ + ++.+++.++++
T Consensus 249 d~--vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~-g~~~~l~~~~----~---~~~~~~~~~~~ 313 (321)
T TIGR00661 249 EL--VITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDL-GCGIALEYKE----L---RLLEAILDIRN 313 (321)
T ss_pred CE--EEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHC-CCEEEcChhh----H---HHHHHHHhccc
Confidence 88 999999999999999999999999954 899999999999 9999998765 4 55556656665
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.59 E-value=1.4e-13 Score=131.91 Aligned_cols=114 Identities=12% Similarity=0.177 Sum_probs=94.5
Q ss_pred CeeEecccC-hHHhhcCCCccceeecCCCchHHHHHHhCCccccccc----ccchhHHHHHHhhhcceEEEEeecCCCCc
Q 017557 236 GFVHGGWVQ-QQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPN----VGDQIINSRLMGEDLKVGVEVERGDEDGL 310 (369)
Q Consensus 236 ~~~v~~~~p-q~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~P~----~~DQ~~na~~v~~~~g~G~~l~~~~~~~~ 310 (369)
++.+.+|.. ..++++.+++ +|+|+|.++++||+++|+|+|++|. .+||..|+..+.+. |+|+.+...+
T Consensus 236 ~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~-~~g~~~~~~~---- 308 (357)
T PRK00726 236 NAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALVDA-GAALLIPQSD---- 308 (357)
T ss_pred cEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHC-CCEEEEEccc----
Confidence 377889984 4679999999 9999999999999999999999997 46899999999999 9999998776
Q ss_pred cCHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 017557 311 FTRDGVCKAVKAVMDDDSEVGKDARQNHAELREFLISPGLENSYVDGFVQE 361 (369)
Q Consensus 311 ~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~v~~ 361 (369)
++++.+.++|+++++ ++.+++++.+-+....+..+..+.++.+.+.
T Consensus 309 ~~~~~l~~~i~~ll~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (357)
T PRK00726 309 LTPEKLAEKLLELLS-----DPERLEAMAEAARALGKPDAAERLADLIEEL 354 (357)
T ss_pred CCHHHHHHHHHHHHc-----CHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence 789999999999998 7788877777776665444445555555443
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.58 E-value=1.7e-13 Score=130.62 Aligned_cols=178 Identities=12% Similarity=0.146 Sum_probs=116.0
Q ss_pred cceeEeCCCCCCCCCCCchhHHHhhhccCCCCceEEEeeCCCccCCH-HHHHHHHHHHHhcCCcEEEEECCCCCCCcccc
Q 017557 144 KRVILAGPVLPEPPASVLEEEFEMLFSSFKAKSLIFCALGSECVLKK-DQFQELILGFELTGLPFFAALKPPTGHDTIES 222 (369)
Q Consensus 144 ~~~~~vGp~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~-~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~ 222 (369)
.++..+|...........+ . .+.+...+++.+|++..|+...... +.+.+.+..+...+..+++.+|.+. .+
T Consensus 152 ~~~~~i~n~v~~~~~~~~~-~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g~-----~~ 224 (350)
T cd03785 152 DKAVVTGNPVREEILALDR-E-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKGD-----LE 224 (350)
T ss_pred CcEEEECCCCchHHhhhhh-h-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCcc-----HH
Confidence 4677788554322111111 1 2233333445567776666643211 2233344444434455666766541 11
Q ss_pred CCchhHHHHhc--CCCeeEeccc-ChHHhhcCCCccceeecCCCchHHHHHHhCCccccccc----ccchhHHHHHHhhh
Q 017557 223 ALPEGFEERVK--GRGFVHGGWV-QQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPN----VGDQIINSRLMGED 295 (369)
Q Consensus 223 ~lp~~~~~~~~--~~~~~v~~~~-pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~P~----~~DQ~~na~~v~~~ 295 (369)
.+.+... ..|+.+.+|. +...+|+.+++ +|+++|.+++.||+++|+|+|+.|. ..+|..|+..+.+.
T Consensus 225 ----~l~~~~~~~~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~ 298 (350)
T cd03785 225 ----EVKKAYEELGVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVKA 298 (350)
T ss_pred ----HHHHHHhccCCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhC
Confidence 2222221 3689999998 55679999999 9999999999999999999999986 36799999999999
Q ss_pred cceEEEEeecCCCCccCHHHHHHHHHHHhccCCcchHHHHHHHHHHHHH
Q 017557 296 LKVGVEVERGDEDGLFTRDGVCKAVKAVMDDDSEVGKDARQNHAELREF 344 (369)
Q Consensus 296 ~g~G~~l~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~ 344 (369)
|.|+.+...+ .+.+++.++|++++. ++..++++.+-+..
T Consensus 299 -g~g~~v~~~~----~~~~~l~~~i~~ll~-----~~~~~~~~~~~~~~ 337 (350)
T cd03785 299 -GAAVLIPQEE----LTPERLAAALLELLS-----DPERLKAMAEAARS 337 (350)
T ss_pred -CCEEEEecCC----CCHHHHHHHHHHHhc-----CHHHHHHHHHHHHh
Confidence 9999998754 689999999999998 55555544443333
No 34
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.57 E-value=1.1e-16 Score=136.73 Aligned_cols=135 Identities=13% Similarity=0.227 Sum_probs=97.9
Q ss_pred eEEEeeCCCccCCH-HHHHHHHHHHHh--cCCcEEEEECCCCCCCccccCCchhHHHHhcCCCeeEecccC-hHHhhcCC
Q 017557 177 LIFCALGSECVLKK-DQFQELILGFEL--TGLPFFAALKPPTGHDTIESALPEGFEERVKGRGFVHGGWVQ-QQLILKHP 252 (369)
Q Consensus 177 ~v~vs~GS~~~~~~-~~~~~~~~~l~~--~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~p-q~~lL~~~ 252 (369)
+|+|++||.+...- +.+.++...+.. ...++++++|.... ......+.. ...++.+.+|.+ ..++++.+
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~-----~~~~~~~~~--~~~~v~~~~~~~~m~~~m~~a 73 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNY-----EELKIKVEN--FNPNVKVFGFVDNMAELMAAA 73 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCEC-----HHHCCCHCC--TTCCCEEECSSSSHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcH-----HHHHHHHhc--cCCcEEEEechhhHHHHHHHc
Confidence 58999999875321 123333444332 35889999887521 111111110 015899999999 67799999
Q ss_pred CccceeecCCCchHHHHHHhCCccccccccc----chhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHHHhc
Q 017557 253 SVGCFVTHCGSGSLSEAMVNECQLVLLPNVG----DQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAVMD 325 (369)
Q Consensus 253 ~~~~~ItHgG~~s~~Eal~~GvP~i~~P~~~----DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ll~ 325 (369)
++ +|||||++|++|++++|+|+|++|... ||..||..+++. |+|+.+...+ .+.+.|.++|.+++.
T Consensus 74 Dl--vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~-g~~~~~~~~~----~~~~~L~~~i~~l~~ 143 (167)
T PF04101_consen 74 DL--VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKK-GAAIMLDESE----LNPEELAEAIEELLS 143 (167)
T ss_dssp SE--EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHC-CCCCCSECCC-----SCCCHHHHHHCHCC
T ss_pred CE--EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHc-CCccccCccc----CCHHHHHHHHHHHHc
Confidence 99 999999999999999999999999987 999999999999 9999999876 778999999999998
No 35
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.52 E-value=2.4e-12 Score=125.00 Aligned_cols=133 Identities=16% Similarity=0.253 Sum_probs=96.5
Q ss_pred CCCceEEEeeCCCccCCHHHHHHHHHHHHh--cCCcEEEEECCCCCCCccccCCchhHHHHh-cCCCeeEecccChH-Hh
Q 017557 173 KAKSLIFCALGSECVLKKDQFQELILGFEL--TGLPFFAALKPPTGHDTIESALPEGFEERV-KGRGFVHGGWVQQQ-LI 248 (369)
Q Consensus 173 ~~~~~v~vs~GS~~~~~~~~~~~~~~~l~~--~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~-~~~~~~v~~~~pq~-~l 248 (369)
+++++|++..|+.+.. ..+..+++++.. .+.+++++.|.+. .+-+.+.+.. ...++.+.+|.++. ++
T Consensus 200 ~~~~~ilv~~G~lg~~--k~~~~li~~~~~~~~~~~~vvv~G~~~-------~l~~~l~~~~~~~~~v~~~G~~~~~~~~ 270 (391)
T PRK13608 200 PDKQTILMSAGAFGVS--KGFDTMITDILAKSANAQVVMICGKSK-------ELKRSLTAKFKSNENVLILGYTKHMNEW 270 (391)
T ss_pred CCCCEEEEECCCcccc--hhHHHHHHHHHhcCCCceEEEEcCCCH-------HHHHHHHHHhccCCCeEEEeccchHHHH
Confidence 4466888888988731 334445555322 3567777766431 1111222222 23578888999764 59
Q ss_pred hcCCCccceeecCCCchHHHHHHhCCccccc-ccccchhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHHHhc
Q 017557 249 LKHPSVGCFVTHCGSGSLSEAMVNECQLVLL-PNVGDQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAVMD 325 (369)
Q Consensus 249 L~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~-P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ll~ 325 (369)
++.+++ +|+..|..|+.||+++|+|+|+. |..++|..|+..+++. |+|+... +.+++.++|.++++
T Consensus 271 ~~~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~-G~g~~~~--------~~~~l~~~i~~ll~ 337 (391)
T PRK13608 271 MASSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEEK-GFGKIAD--------TPEEAIKIVASLTN 337 (391)
T ss_pred HHhhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhC-CcEEEeC--------CHHHHHHHHHHHhc
Confidence 999999 99999989999999999999998 7767778999999999 9998753 57789999999998
No 36
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.50 E-value=3.7e-12 Score=123.15 Aligned_cols=166 Identities=20% Similarity=0.240 Sum_probs=111.3
Q ss_pred CCCceEEEeeCCCccCCHHHHHHHHHHHHh-cCCcEEEEECCCCCCCccccCCchhHHHHhc--CCCeeEecccChH-Hh
Q 017557 173 KAKSLIFCALGSECVLKKDQFQELILGFEL-TGLPFFAALKPPTGHDTIESALPEGFEERVK--GRGFVHGGWVQQQ-LI 248 (369)
Q Consensus 173 ~~~~~v~vs~GS~~~~~~~~~~~~~~~l~~-~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~--~~~~~v~~~~pq~-~l 248 (369)
+++++|++..|+.+.. ..+..+++++.. .+.+++++.+.+. .+-+.+.+... +.|+.+.+|+++. ++
T Consensus 200 ~~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~~-------~~~~~l~~~~~~~~~~v~~~g~~~~~~~l 270 (380)
T PRK13609 200 PNKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKNE-------ALKQSLEDLQETNPDALKVFGYVENIDEL 270 (380)
T ss_pred CCCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCCH-------HHHHHHHHHHhcCCCcEEEEechhhHHHH
Confidence 3456788877887642 234556666653 3567777765431 11112222211 2479999999874 69
Q ss_pred hcCCCccceeecCCCchHHHHHHhCCccccc-ccccchhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHHHhccC
Q 017557 249 LKHPSVGCFVTHCGSGSLSEAMVNECQLVLL-PNVGDQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAVMDDD 327 (369)
Q Consensus 249 L~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~-P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ll~~~ 327 (369)
++.+++ +|+.+|..|+.||+++|+|+|+. |..+.|..|+..+++. |+|+.. -+.+++.++|.++++
T Consensus 271 ~~~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~-G~~~~~--------~~~~~l~~~i~~ll~-- 337 (380)
T PRK13609 271 FRVTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERK-GAAVVI--------RDDEEVFAKTEALLQ-- 337 (380)
T ss_pred HHhccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhC-CcEEEE--------CCHHHHHHHHHHHHC--
Confidence 999998 99999988999999999999985 6677788999999998 998764 256899999999998
Q ss_pred CcchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 017557 328 SEVGKDARQNHAELREFLISPGLENSYVDGFVQELH 363 (369)
Q Consensus 328 ~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~v~~l~ 363 (369)
++..++++.+-...+....+.++.++.+++.+.
T Consensus 338 ---~~~~~~~m~~~~~~~~~~~s~~~i~~~i~~~~~ 370 (380)
T PRK13609 338 ---DDMKLLQMKEAMKSLYLPEPADHIVDDILAENH 370 (380)
T ss_pred ---CHHHHHHHHHHHHHhCCCchHHHHHHHHHHhhh
Confidence 555555544433334433333444454444443
No 37
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.46 E-value=2.1e-11 Score=118.05 Aligned_cols=173 Identities=13% Similarity=0.045 Sum_probs=109.7
Q ss_pred HHHhhhccCCCCceEEEeeCCCccCCHHH-HHHHHHHHH-----hcCCcEEEEECCCCCCCccccCCchhHHHHhcCCCe
Q 017557 164 EFEMLFSSFKAKSLIFCALGSECVLKKDQ-FQELILGFE-----LTGLPFFAALKPPTGHDTIESALPEGFEERVKGRGF 237 (369)
Q Consensus 164 ~~~~~l~~~~~~~~v~vs~GS~~~~~~~~-~~~~~~~l~-----~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~ 237 (369)
.+.+-+.-.+++++|++..|+.+...... +..+.+.+. ..+.++++++|.+. .+-+.+.+.....++
T Consensus 195 ~~r~~~gl~~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~-------~~~~~L~~~~~~~~v 267 (382)
T PLN02605 195 ELRRELGMDEDLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVICGRNK-------KLQSKLESRDWKIPV 267 (382)
T ss_pred HHHHHcCCCCCCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEEECCCH-------HHHHHHHhhcccCCe
Confidence 34433444445668887777766433332 233332221 23456677776531 111112111113468
Q ss_pred eEecccCh-HHhhcCCCccceeecCCCchHHHHHHhCCcccccccccchh-HHHHHHhhhcceEEEEeecCCCCccCHHH
Q 017557 238 VHGGWVQQ-QLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQI-INSRLMGEDLKVGVEVERGDEDGLFTRDG 315 (369)
Q Consensus 238 ~v~~~~pq-~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~P~~~DQ~-~na~~v~~~~g~G~~l~~~~~~~~~~~~~ 315 (369)
.+.+|+++ .++++.+++ +|+.+|.+|+.||+++|+|+|+.+....|. .|+..+.+. |.|+.+ -+++.
T Consensus 268 ~~~G~~~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~-g~g~~~--------~~~~~ 336 (382)
T PLN02605 268 KVRGFVTNMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDN-GFGAFS--------ESPKE 336 (382)
T ss_pred EEEeccccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhC-Cceeec--------CCHHH
Confidence 88899986 459999999 999999999999999999999998766665 799999999 999865 26789
Q ss_pred HHHHHHHHhccCCcchHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 017557 316 VCKAVKAVMDDDSEVGKDARQNHAELREFLISPGLENSYVDGFV 359 (369)
Q Consensus 316 l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~v 359 (369)
+.++|.+++.+ +++.++++++-+.... .+.+...+.+.+
T Consensus 337 la~~i~~ll~~----~~~~~~~m~~~~~~~~-~~~a~~~i~~~l 375 (382)
T PLN02605 337 IARIVAEWFGD----KSDELEAMSENALKLA-RPEAVFDIVHDL 375 (382)
T ss_pred HHHHHHHHHcC----CHHHHHHHHHHHHHhc-CCchHHHHHHHH
Confidence 99999999982 2555544444444443 333434443333
No 38
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.46 E-value=3.2e-12 Score=123.68 Aligned_cols=202 Identities=12% Similarity=0.068 Sum_probs=123.9
Q ss_pred cceeEeC-CCCCCCCCC-CchhHHHhhhccCCCCceEEEeeCCCccCCHHHHHHHHHHHH---hc--CCcEEEEECCCCC
Q 017557 144 KRVILAG-PVLPEPPAS-VLEEEFEMLFSSFKAKSLIFCALGSECVLKKDQFQELILGFE---LT--GLPFFAALKPPTG 216 (369)
Q Consensus 144 ~~~~~vG-p~~~~~~~~-~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~~l~---~~--~~~~i~~~~~~~~ 216 (369)
.+..+|| |+....... +...+..+-+.-.+++++|.+..||....-...+..+++++. .. +.++++.......
T Consensus 158 ~~~~~vGnPv~~~~~~~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~~ 237 (385)
T TIGR00215 158 VPCRFVGHPLLDAIPLYKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFKR 237 (385)
T ss_pred CCEEEECCchhhhccccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCchh
Confidence 3567788 443221110 122223333333445678888888987532233444554433 22 3456555433210
Q ss_pred CCccccCCchhHHHHhc-CCCeeEecccChHHhhcCCCccceeecCCCchHHHHHHhCCccccc----cccc--------
Q 017557 217 HDTIESALPEGFEERVK-GRGFVHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLL----PNVG-------- 283 (369)
Q Consensus 217 ~~~~~~~lp~~~~~~~~-~~~~~v~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~----P~~~-------- 283 (369)
...+ +.+.+... ...+.+..+ +...+++.+++ +|+.+|..|+ |++++|+|+|++ |+..
T Consensus 238 ----~~~~-~~~~~~~~~~~~v~~~~~-~~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~ 308 (385)
T TIGR00215 238 ----RLQF-EQIKAEYGPDLQLHLIDG-DARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVK 308 (385)
T ss_pred ----HHHH-HHHHHHhCCCCcEEEECc-hHHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHc
Confidence 0001 01111111 112333222 34568999999 9999999887 999999999999 8732
Q ss_pred -chhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHHHhccCC----cchHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 017557 284 -DQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAVMDDDS----EVGKDARQNHAELREFLISPGLENSYVDGF 358 (369)
Q Consensus 284 -DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ll~~~~----~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~ 358 (369)
.|..|+..+.+. ++...+..++ +|++.|.+++.+++.+ + +..+.+++..+++.+.+.+.+.+.++.+.+
T Consensus 309 ~~~~~~~nil~~~-~~~pel~q~~----~~~~~l~~~~~~ll~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~i 382 (385)
T TIGR00215 309 TDYISLPNILANR-LLVPELLQEE----CTPHPLAIALLLLLEN-GLKAYKEMHRERQFFEELRQRIYCNADSERAAQAV 382 (385)
T ss_pred CCeeeccHHhcCC-ccchhhcCCC----CCHHHHHHHHHHHhcC-CcccHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 278899999999 9999988777 9999999999999983 3 335577777777777776555555555544
Q ss_pred HH
Q 017557 359 VQ 360 (369)
Q Consensus 359 v~ 360 (369)
++
T Consensus 383 ~~ 384 (385)
T TIGR00215 383 LE 384 (385)
T ss_pred hh
Confidence 43
No 39
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.35 E-value=6.9e-11 Score=114.13 Aligned_cols=199 Identities=16% Similarity=0.141 Sum_probs=103.8
Q ss_pred ceeEeC-CCCCCCCCCCchhHHHhhhccCCCCceEEEeeCCCccCCHHHHHHHHHHHH---h--cCCcEEEEECCCCCCC
Q 017557 145 RVILAG-PVLPEPPASVLEEEFEMLFSSFKAKSLIFCALGSECVLKKDQFQELILGFE---L--TGLPFFAALKPPTGHD 218 (369)
Q Consensus 145 ~~~~vG-p~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~~l~---~--~~~~~i~~~~~~~~~~ 218 (369)
++.++| |+............+.+-+.-.+++++|++..||...........+++++. . .+.+++++.+...
T Consensus 155 ~~~~~G~p~~~~~~~~~~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~~--- 231 (380)
T PRK00025 155 PVTFVGHPLADAIPLLPDRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNPK--- 231 (380)
T ss_pred CeEEECcCHHHhcccccChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCChh---
Confidence 377788 333221111112233333333334556777777765432222344444432 2 2456777654221
Q ss_pred ccccCCchhHHHHhcCC---CeeEecccChHHhhcCCCccceeecCCCchHHHHHHhCCccccccccc--------chhH
Q 017557 219 TIESALPEGFEERVKGR---GFVHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVG--------DQII 287 (369)
Q Consensus 219 ~~~~~lp~~~~~~~~~~---~~~v~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~P~~~--------DQ~~ 287 (369)
.-+.+.+..... ++.+.. -.-..+++.+++ +|+.+|.+++ |++++|+|+|..|-.. +|..
T Consensus 232 -----~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~ 302 (380)
T PRK00025 232 -----RREQIEEALAEYAGLEVTLLD-GQKREAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVK 302 (380)
T ss_pred -----hHHHHHHHHhhcCCCCeEEEc-ccHHHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHc
Confidence 111222222211 333322 124568999999 9999998777 9999999999985321 2322
Q ss_pred H-----HHHHhhhcceEEEEeecCCCCccCHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 017557 288 N-----SRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAVMDDDSEVGKDARQNHAELREFLISPGLENSYVDGFVQEL 362 (369)
Q Consensus 288 n-----a~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~v~~l 362 (369)
| +..+.+. +++..+...+ .+++.+.+++.+++++ .+..++++++++++.+.+ ..+ +.+.+.+++..+
T Consensus 303 ~~~~~l~~~~~~~-~~~~~~~~~~----~~~~~l~~~i~~ll~~-~~~~~~~~~~~~~~~~~~-~~~-a~~~~~~~i~~~ 374 (380)
T PRK00025 303 VPYVSLPNLLAGR-ELVPELLQEE----ATPEKLARALLPLLAD-GARRQALLEGFTELHQQL-RCG-ADERAAQAVLEL 374 (380)
T ss_pred CCeeehHHHhcCC-CcchhhcCCC----CCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHh-CCC-HHHHHHHHHHHH
Confidence 2 2333444 4444444444 7899999999999982 222234445555555555 333 334444444443
Q ss_pred H
Q 017557 363 H 363 (369)
Q Consensus 363 ~ 363 (369)
.
T Consensus 375 ~ 375 (380)
T PRK00025 375 L 375 (380)
T ss_pred h
Confidence 3
No 40
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.32 E-value=8.8e-11 Score=111.82 Aligned_cols=90 Identities=13% Similarity=0.248 Sum_probs=75.0
Q ss_pred ChHHhhcCCCccceeecCCCchHHHHHHhCCcccccccc---cchhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHH
Q 017557 244 QQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNV---GDQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAV 320 (369)
Q Consensus 244 pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~P~~---~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai 320 (369)
+...+|+.+++ +|+++|.+++.||+++|+|+|+.|.. .+|..|+..+++. |.|+.++..+ .+++.+.++|
T Consensus 243 ~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~-~~G~~~~~~~----~~~~~l~~~i 315 (348)
T TIGR01133 243 NMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDL-GAGLVIRQKE----LLPEKLLEAL 315 (348)
T ss_pred CHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHC-CCEEEEeccc----CCHHHHHHHH
Confidence 45679999999 99999988999999999999999873 4788899999998 9999988765 6899999999
Q ss_pred HHHhccCCcchHHHHHHHHHHHHHH
Q 017557 321 KAVMDDDSEVGKDARQNHAELREFL 345 (369)
Q Consensus 321 ~~ll~~~~~~~~~~~~~a~~l~~~~ 345 (369)
+++++ ++.+++++.+-+...
T Consensus 316 ~~ll~-----~~~~~~~~~~~~~~~ 335 (348)
T TIGR01133 316 LKLLL-----DPANLEAMAEAARKL 335 (348)
T ss_pred HHHHc-----CHHHHHHHHHHHHhc
Confidence 99998 666665555444333
No 41
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.25 E-value=5.5e-10 Score=108.38 Aligned_cols=191 Identities=14% Similarity=0.116 Sum_probs=116.0
Q ss_pred CcceeEeC-CCCCCCCCCCchhHHHhhhccCCCCceEEEeeCCCccCCHHHHHHHHHHHHh----cCCcEEEEECCCCCC
Q 017557 143 EKRVILAG-PVLPEPPASVLEEEFEMLFSSFKAKSLIFCALGSECVLKKDQFQELILGFEL----TGLPFFAALKPPTGH 217 (369)
Q Consensus 143 ~~~~~~vG-p~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~~l~~----~~~~~i~~~~~~~~~ 217 (369)
+.++.+|| |+...-... ... . + .+++++|.+-.||........+..++++++. .+..|++.+.++..
T Consensus 179 g~k~~~vGnPv~d~l~~~-~~~---~-l--~~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~~- 250 (396)
T TIGR03492 179 GVRASYLGNPMMDGLEPP-ERK---P-L--LTGRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSLS- 250 (396)
T ss_pred CCeEEEeCcCHHhcCccc-ccc---c-c--CCCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCCC-
Confidence 34799999 766542211 111 1 1 2335688999999876444445555555543 36778888743311
Q ss_pred CccccCCchhHHH-H-------------hcCCCeeEeccc-ChHHhhcCCCccceeecCCCchHHHHHHhCCcccccccc
Q 017557 218 DTIESALPEGFEE-R-------------VKGRGFVHGGWV-QQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNV 282 (369)
Q Consensus 218 ~~~~~~lp~~~~~-~-------------~~~~~~~v~~~~-pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~P~~ 282 (369)
...+-..+.+ . ...+++.+..+. +...+++.+++ +|+.+|..| .|+.+.|+|+|.+|.-
T Consensus 251 ---~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip~~ 324 (396)
T TIGR03492 251 ---LEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQLPGK 324 (396)
T ss_pred ---HHHHHHHHHhcCceecCCccccchhhccCceEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEeCC
Confidence 1111000100 0 001235554554 34669999999 999999766 9999999999999987
Q ss_pred cchhHHHHHHhhh---cceEEEEeecCCCCccCHHHHHHHHHHHhccCCcchHHHHHHHH-HHHHHHhcCCCCHHHHHHH
Q 017557 283 GDQIINSRLMGED---LKVGVEVERGDEDGLFTRDGVCKAVKAVMDDDSEVGKDARQNHA-ELREFLISPGLENSYVDGF 358 (369)
Q Consensus 283 ~DQ~~na~~v~~~---~g~G~~l~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~a~-~l~~~~~~~~~~~~~~~~~ 358 (369)
.+|. |+..+++. .|.++.+.. .+.+.+.+++.++++ ++..++++. +..+.+. .+.+.+.+.+.
T Consensus 325 ~~q~-na~~~~~~~~l~g~~~~l~~------~~~~~l~~~l~~ll~-----d~~~~~~~~~~~~~~lg-~~~a~~~ia~~ 391 (396)
T TIGR03492 325 GPQF-TYGFAEAQSRLLGGSVFLAS------KNPEQAAQVVRQLLA-----DPELLERCRRNGQERMG-PPGASARIAES 391 (396)
T ss_pred CCHH-HHHHHHhhHhhcCCEEecCC------CCHHHHHHHHHHHHc-----CHHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 8886 98777652 266666654 355999999999998 666555554 3444444 23444444444
Q ss_pred HH
Q 017557 359 VQ 360 (369)
Q Consensus 359 v~ 360 (369)
+.
T Consensus 392 i~ 393 (396)
T TIGR03492 392 IL 393 (396)
T ss_pred HH
Confidence 43
No 42
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.09 E-value=3.8e-09 Score=97.77 Aligned_cols=104 Identities=8% Similarity=-0.002 Sum_probs=78.4
Q ss_pred ceEEEeeCCCccCCHHHHHHHHHHHHh--cCCcEEEEECCCCCCCccccCCchhHHHHh-cCCCeeEecccChH-HhhcC
Q 017557 176 SLIFCALGSECVLKKDQFQELILGFEL--TGLPFFAALKPPTGHDTIESALPEGFEERV-KGRGFVHGGWVQQQ-LILKH 251 (369)
Q Consensus 176 ~~v~vs~GS~~~~~~~~~~~~~~~l~~--~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~-~~~~~~v~~~~pq~-~lL~~ 251 (369)
+.|+|+||...... ....++++|.. .+.++.+++|... ...+.+.+.. ..+|+.+..++++. .+|+.
T Consensus 171 ~~iLi~~GG~d~~~--~~~~~l~~l~~~~~~~~i~vv~G~~~-------~~~~~l~~~~~~~~~i~~~~~~~~m~~lm~~ 241 (279)
T TIGR03590 171 RRVLVSFGGADPDN--LTLKLLSALAESQINISITLVTGSSN-------PNLDELKKFAKEYPNIILFIDVENMAELMNE 241 (279)
T ss_pred CeEEEEeCCcCCcC--HHHHHHHHHhccccCceEEEEECCCC-------cCHHHHHHHHHhCCCEEEEeCHHHHHHHHHH
Confidence 57899999765432 34456666653 4567888887652 1122333322 24589999999885 69999
Q ss_pred CCccceeecCCCchHHHHHHhCCcccccccccchhHHHHH
Q 017557 252 PSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINSRL 291 (369)
Q Consensus 252 ~~~~~~ItHgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~ 291 (369)
+++ +||+|| +|++|+++.|+|+|++|...+|..||+.
T Consensus 242 aDl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 242 ADL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred CCE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 999 999999 9999999999999999999999999975
No 43
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.97 E-value=3.9e-07 Score=86.15 Aligned_cols=274 Identities=14% Similarity=0.076 Sum_probs=149.3
Q ss_pred HHHHHHHhhcCCCEEEECC-CC---ChHHHHHHhCCCeEEEeCchHHHHHhhhchhhhhcCCCCCccCCCCCCCCCCCCc
Q 017557 9 PAIEAIVRDIKPNIVFFDF-TY---WLPSLARKLGIKSIAFVTVSPATVGYLLSPERKLRDKFLTEADLLQPPQGFPPSK 84 (369)
Q Consensus 9 ~~l~~~l~~~~pD~vI~D~-~~---~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 84 (369)
..+...+++.+||+|++.. .. .+..++++.++|++........... . .....
T Consensus 73 ~~~~~~~~~~~pdii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~-------------------~~~~~-- 128 (364)
T cd03814 73 RRVRRLLDAFAPDVVHIATPGPLGLAALRAARRLGIPVVTSYHTDFPEYL---R-------------------YYGLG-- 128 (364)
T ss_pred hhHHHHHHhcCCCEEEEeccchhhHHHHHHHHHcCCCEEEEEecChHHHh---h-------------------hcccc--
Confidence 4566677788999998775 33 3467788899999886543322100 0 00000
Q ss_pred cccCccccchhhhhcccCCCchHHHHHHHHhhccCceeeeccccchhhhhhhhhhhhcCcceeEeCCCCCCC---CCCCc
Q 017557 85 IKLRAHEARGLAAATVKDFGGLSFMERLLLCLTECDAIGFKTCREIEGAYCDCVESQFEKRVILAGPVLPEP---PASVL 161 (369)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~---~~~~~ 161 (369)
. .... .. .........+|.+++.|....+. .......++..+.+-.... +....
T Consensus 129 ----~--~~~~----------~~--~~~~~~~~~~d~i~~~s~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~ 185 (364)
T cd03814 129 ----P--LSWL----------AW--AYLRWFHNRADRVLVPSPSLADE-----LRARGFRRVRLWPRGVDTELFHPRRRD 185 (364)
T ss_pred ----h--HhHh----------hH--HHHHHHHHhCCEEEeCCHHHHHH-----HhccCCCceeecCCCccccccCccccc
Confidence 0 0000 00 01122345578777777654431 1111223444444322211 11111
Q ss_pred hhHHHhhhccCCCCceEEEeeCCCcc-CCHHHHHHHHHHHHh-cCCcEEEEECCCCCCCccccCCchhHHHHhcCCCeeE
Q 017557 162 EEEFEMLFSSFKAKSLIFCALGSECV-LKKDQFQELILGFEL-TGLPFFAALKPPTGHDTIESALPEGFEERVKGRGFVH 239 (369)
Q Consensus 162 ~~~~~~~l~~~~~~~~v~vs~GS~~~-~~~~~~~~~~~~l~~-~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v 239 (369)
......+- ..++.+++..|+... ...+.+.+++..+.. .+..++++-... . .. .+. ....|+.+
T Consensus 186 ~~~~~~~~---~~~~~~i~~~G~~~~~k~~~~~i~~~~~l~~~~~~~l~i~G~~~-~----~~----~~~--~~~~~v~~ 251 (364)
T cd03814 186 EALRARLG---PPDRPVLLYVGRLAPEKNLEALLDADLPLRRRPPVRLVIVGDGP-A----RA----RLE--ARYPNVHF 251 (364)
T ss_pred HHHHHHhC---CCCCeEEEEEeccccccCHHHHHHHHHHhhhcCCceEEEEeCCc-h----HH----HHh--ccCCcEEE
Confidence 11222222 223356677777653 223445555555533 244555443221 1 00 111 12458999
Q ss_pred ecccChHH---hhcCCCccceeecCC----CchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecCCCCccC
Q 017557 240 GGWVQQQL---ILKHPSVGCFVTHCG----SGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGLFT 312 (369)
Q Consensus 240 ~~~~pq~~---lL~~~~~~~~ItHgG----~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~ 312 (369)
.+|+++.+ +++.+++ +|+.+. .+++.||+++|+|+|+.+..+ +...+++. +.|..... -+
T Consensus 252 ~g~~~~~~~~~~~~~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~----~~~~i~~~-~~g~~~~~------~~ 318 (364)
T cd03814 252 LGFLDGEELAAAYASADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAGG----PADIVTDG-ENGLLVEP------GD 318 (364)
T ss_pred EeccCHHHHHHHHHhCCE--EEECcccccCCcHHHHHHHcCCCEEEcCCCC----chhhhcCC-cceEEcCC------CC
Confidence 99998755 7889998 886654 478999999999999887543 55667777 89988875 36
Q ss_pred HHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 017557 313 RDGVCKAVKAVMDDDSEVGKDARQNHAELREFLISPGLENSYVDGFVQE 361 (369)
Q Consensus 313 ~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~v~~ 361 (369)
.+++.++|.+++. ++..++++.+-+....+.-+.++..+.+++.
T Consensus 319 ~~~l~~~i~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (364)
T cd03814 319 AEAFAAALAALLA-----DPELRRRMAARARAEAERRSWEAFLDNLLEA 362 (364)
T ss_pred HHHHHHHHHHHHc-----CHHHHHHHHHHHHHHHhhcCHHHHHHHHHHh
Confidence 7889999999998 5555444444443433333444445555543
No 44
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=98.91 E-value=2.6e-08 Score=91.54 Aligned_cols=184 Identities=14% Similarity=0.188 Sum_probs=127.3
Q ss_pred Cceeeeccccchhhhhhhh-hhhhcCcceeEeCCCCCCCCCCCchhHHHhhhccCCCCceEEEeeCCCccCCHHHHHHHH
Q 017557 119 CDAIGFKTCREIEGAYCDC-VESQFEKRVILAGPVLPEPPASVLEEEFEMLFSSFKAKSLIFCALGSECVLKKDQFQELI 197 (369)
Q Consensus 119 ~~~~l~~s~~~l~~~~~~~-~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~ 197 (369)
.|.+++-..+.|.-+.-.+ .......++.|+|.+-.+-+...++. ... +++.-|+||-|... ...+.+...+
T Consensus 168 yD~V~v~GdP~f~d~~~~~~~~~~i~~k~~ytG~vq~~~~~~~~p~-----~~~-pE~~~Ilvs~GGG~-dG~eLi~~~l 240 (400)
T COG4671 168 YDLVLVYGDPDFYDPLTEFPFAPAIRAKMRYTGFVQRSLPHLPLPP-----HEA-PEGFDILVSVGGGA-DGAELIETAL 240 (400)
T ss_pred heEEEEecCccccChhhcCCccHhhhhheeEeEEeeccCcCCCCCC-----cCC-CccceEEEecCCCh-hhHHHHHHHH
Confidence 5777777777664322111 11223457999998821111111111 111 33457888877654 2345555655
Q ss_pred HHHH-hcCCc--EEEEECCCCCCCccccCCchhHHHHh-----cCCCeeEecccCh-HHhhcCCCccceeecCCCchHHH
Q 017557 198 LGFE-LTGLP--FFAALKPPTGHDTIESALPEGFEERV-----KGRGFVHGGWVQQ-QLILKHPSVGCFVTHCGSGSLSE 268 (369)
Q Consensus 198 ~~l~-~~~~~--~i~~~~~~~~~~~~~~~lp~~~~~~~-----~~~~~~v~~~~pq-~~lL~~~~~~~~ItHgG~~s~~E 268 (369)
.|-. ..+.+ .++++|+. +|....+++ +.+++.|..|-.+ ..+++.++. +|+-||+||++|
T Consensus 241 ~A~~~l~~l~~~~~ivtGP~---------MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCe 309 (400)
T COG4671 241 AAAQLLAGLNHKWLIVTGPF---------MPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCE 309 (400)
T ss_pred HHhhhCCCCCcceEEEeCCC---------CCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhH
Confidence 5543 25555 67777654 454433322 3479999999765 569999999 999999999999
Q ss_pred HHHhCCcccccccc---cchhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHHHhc
Q 017557 269 AMVNECQLVLLPNV---GDQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAVMD 325 (369)
Q Consensus 269 al~~GvP~i~~P~~---~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ll~ 325 (369)
-+.+|+|.+++|.. -+|..-|.|+++. |.-=.+..++ +|+..+.++|...++
T Consensus 310 ILs~~k~aLivPr~~p~eEQliRA~Rl~~L-GL~dvL~pe~----lt~~~La~al~~~l~ 364 (400)
T COG4671 310 ILSFGKPALIVPRAAPREEQLIRAQRLEEL-GLVDVLLPEN----LTPQNLADALKAALA 364 (400)
T ss_pred HHhCCCceEEeccCCCcHHHHHHHHHHHhc-CcceeeCccc----CChHHHHHHHHhccc
Confidence 99999999999994 3999999999999 9999998887 999999999998887
No 45
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.87 E-value=8.2e-08 Score=91.03 Aligned_cols=183 Identities=16% Similarity=0.099 Sum_probs=110.9
Q ss_pred CcceeEeC-CCCCCCCCCCchhHHHhhhccCCCCceEEEeeCCCccCCHHHHHHHHHHHH---hcCCcEEEEECCCCCCC
Q 017557 143 EKRVILAG-PVLPEPPASVLEEEFEMLFSSFKAKSLIFCALGSECVLKKDQFQELILGFE---LTGLPFFAALKPPTGHD 218 (369)
Q Consensus 143 ~~~~~~vG-p~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~~l~---~~~~~~i~~~~~~~~~~ 218 (369)
+.++.+|| |+...-.. .... + +++++|.+--||..+.-...+..++++.. +....|++. +..
T Consensus 143 g~~~~~VGhPl~d~~~~--~~~~----~---~~~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~-~a~---- 208 (347)
T PRK14089 143 QSKATYVGHPLLDEIKE--FKKD----L---DKEGTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVP-SFF---- 208 (347)
T ss_pred CCCCEEECCcHHHhhhh--hhhh----c---CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEe-CCC----
Confidence 55688999 66543110 0111 2 22368999999997643455554444443 222223332 221
Q ss_pred ccccCCchhHHHHhcC-CCeeEecccChHHhhcCCCccceeecCCCchHHHHHHhCCcccccccc--cchhHHHHHHh--
Q 017557 219 TIESALPEGFEERVKG-RGFVHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNV--GDQIINSRLMG-- 293 (369)
Q Consensus 219 ~~~~~lp~~~~~~~~~-~~~~v~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~P~~--~DQ~~na~~v~-- 293 (369)
.. +.+.+.... ..+.+.+ ...++++.+++ .|+-+|..|+ |+.+.|+|+|+ ++- .-|+.||+++.
T Consensus 209 ----~~-~~i~~~~~~~~~~~~~~--~~~~~m~~aDl--al~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~ 277 (347)
T PRK14089 209 ----KG-KDLKEIYGDISEFEISY--DTHKALLEAEF--AFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKL 277 (347)
T ss_pred ----cH-HHHHHHHhcCCCcEEec--cHHHHHHhhhH--HHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcC
Confidence 11 223332211 1222322 34568999999 9999999999 99999999999 653 47899999998
Q ss_pred -hhcceEEEEee----cC-----CCCccCHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 017557 294 -EDLKVGVEVER----GD-----EDGLFTRDGVCKAVKAVMDDDSEVGKDARQNHAELREFLISPGLENSYVDGFV 359 (369)
Q Consensus 294 -~~~g~G~~l~~----~~-----~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~v 359 (369)
.. |..-.+-. .+ .+...|++.|.+++.+ .. .+++++..+++.+.+.. ++.+.+.+.+
T Consensus 278 ~~i-gL~Nii~~~~~~~~vvPEllQ~~~t~~~la~~i~~-~~-----~~~~~~~~~~l~~~l~~--~a~~~~A~~i 344 (347)
T PRK14089 278 KHI-GLANIFFDFLGKEPLHPELLQEFVTVENLLKAYKE-MD-----REKFFKKSKELREYLKH--GSAKNVAKIL 344 (347)
T ss_pred Cee-ehHHHhcCCCcccccCchhhcccCCHHHHHHHHHH-HH-----HHHHHHHHHHHHHHhcC--CHHHHHHHHH
Confidence 44 55554522 00 1234899999999988 34 57888999999888853 3334444444
No 46
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.77 E-value=1.8e-07 Score=89.99 Aligned_cols=138 Identities=10% Similarity=0.110 Sum_probs=84.9
Q ss_pred ceEEEeeCCCccCCHHHHHHHHHHHHhc-----CCcEEEEECCCCCCCccccCCchhHHHHh-cCCCeeEecccCh---H
Q 017557 176 SLIFCALGSECVLKKDQFQELILGFELT-----GLPFFAALKPPTGHDTIESALPEGFEERV-KGRGFVHGGWVQQ---Q 246 (369)
Q Consensus 176 ~~v~vs~GS~~~~~~~~~~~~~~~l~~~-----~~~~i~~~~~~~~~~~~~~~lp~~~~~~~-~~~~~~v~~~~pq---~ 246 (369)
.+++++++-.... ...+..+++++... +.++++..+++. ..-..+.+.. ...++++.+.++. .
T Consensus 198 ~~vl~~~hr~~~~-~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 269 (365)
T TIGR00236 198 RYILLTLHRRENV-GEPLENIFKAIREIVEEFEDVQIVYPVHLNP-------VVREPLHKHLGDSKRVHLIEPLEYLDFL 269 (365)
T ss_pred CEEEEecCchhhh-hhHHHHHHHHHHHHHHHCCCCEEEEECCCCh-------HHHHHHHHHhCCCCCEEEECCCChHHHH
Confidence 4666655432211 13356677766432 456666544321 1111122222 2357888776654 3
Q ss_pred HhhcCCCccceeecCCCchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHHHhcc
Q 017557 247 LILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAVMDD 326 (369)
Q Consensus 247 ~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ll~~ 326 (369)
.+++++++ +|+-.|. .+.||+++|+|+|.++..++++. +.+. |.++.+. -+++++.+++.++++
T Consensus 270 ~~l~~ad~--vv~~Sg~-~~~EA~a~g~PvI~~~~~~~~~e----~~~~-g~~~lv~-------~d~~~i~~ai~~ll~- 333 (365)
T TIGR00236 270 NLAANSHL--ILTDSGG-VQEEAPSLGKPVLVLRDTTERPE----TVEA-GTNKLVG-------TDKENITKAAKRLLT- 333 (365)
T ss_pred HHHHhCCE--EEECChh-HHHHHHHcCCCEEECCCCCCChH----HHhc-CceEEeC-------CCHHHHHHHHHHHHh-
Confidence 56788888 9998764 47999999999999976555542 3345 7776653 368899999999998
Q ss_pred CCcchHHHHHHHHHH
Q 017557 327 DSEVGKDARQNHAEL 341 (369)
Q Consensus 327 ~~~~~~~~~~~a~~l 341 (369)
++..++++.+-
T Consensus 334 ----~~~~~~~~~~~ 344 (365)
T TIGR00236 334 ----DPDEYKKMSNA 344 (365)
T ss_pred ----ChHHHHHhhhc
Confidence 66666655443
No 47
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=98.73 E-value=5.8e-06 Score=82.21 Aligned_cols=140 Identities=17% Similarity=0.140 Sum_probs=88.1
Q ss_pred eEEEeeCCCccCCHHHHHHHHHHHHhc-CCcEEEEECCCCCCCccccCCchhHHHHhcCCCeeEecccChHH---hhcCC
Q 017557 177 LIFCALGSECVLKKDQFQELILGFELT-GLPFFAALKPPTGHDTIESALPEGFEERVKGRGFVHGGWVQQQL---ILKHP 252 (369)
Q Consensus 177 ~v~vs~GS~~~~~~~~~~~~~~~l~~~-~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~---lL~~~ 252 (369)
.+++..|+... ...+..++++++.. +.+++++ |.+ ...+.+.+.....++.+.+|+++.+ +++.+
T Consensus 264 ~~i~~vGrl~~--~K~~~~li~a~~~~~~~~l~iv-G~G--------~~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~a 332 (465)
T PLN02871 264 PLIVYVGRLGA--EKNLDFLKRVMERLPGARLAFV-GDG--------PYREELEKMFAGTPTVFTGMLQGDELSQAYASG 332 (465)
T ss_pred eEEEEeCCCch--hhhHHHHHHHHHhCCCcEEEEE-eCC--------hHHHHHHHHhccCCeEEeccCCHHHHHHHHHHC
Confidence 45556677653 23355566666543 5665554 332 1112344444456899999997644 88889
Q ss_pred CccceeecCC----CchHHHHHHhCCcccccccccchhHHHHHHhh---hcceEEEEeecCCCCccCHHHHHHHHHHHhc
Q 017557 253 SVGCFVTHCG----SGSLSEAMVNECQLVLLPNVGDQIINSRLMGE---DLKVGVEVERGDEDGLFTRDGVCKAVKAVMD 325 (369)
Q Consensus 253 ~~~~~ItHgG----~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~---~~g~G~~l~~~~~~~~~~~~~l~~ai~~ll~ 325 (369)
++ ||.-.. .+++.||+++|+|+|+-... .....+++ . +.|+.++.. +.+++.++|.++++
T Consensus 333 Dv--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~g----g~~eiv~~~~~~-~~G~lv~~~------d~~~la~~i~~ll~ 399 (465)
T PLN02871 333 DV--FVMPSESETLGFVVLEAMASGVPVVAARAG----GIPDIIPPDQEG-KTGFLYTPG------DVDDCVEKLETLLA 399 (465)
T ss_pred CE--EEECCcccccCcHHHHHHHcCCCEEEcCCC----CcHhhhhcCCCC-CceEEeCCC------CHHHHHHHHHHHHh
Confidence 99 775433 34688999999999987543 23344555 6 889988764 57899999999997
Q ss_pred cCCcchHHHHHHHHHH
Q 017557 326 DDSEVGKDARQNHAEL 341 (369)
Q Consensus 326 ~~~~~~~~~~~~a~~l 341 (369)
+ ++.-..+.+++++.
T Consensus 400 ~-~~~~~~~~~~a~~~ 414 (465)
T PLN02871 400 D-PELRERMGAAAREE 414 (465)
T ss_pred C-HHHHHHHHHHHHHH
Confidence 2 22223344555443
No 48
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.71 E-value=5.2e-06 Score=81.51 Aligned_cols=69 Identities=12% Similarity=0.058 Sum_probs=54.4
Q ss_pred HHhhcCCCccceeec-----CCCchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHH
Q 017557 246 QLILKHPSVGCFVTH-----CGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAV 320 (369)
Q Consensus 246 ~~lL~~~~~~~~ItH-----gG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai 320 (369)
..+++.+++ ++.. +|..++.||+++|+|+|+-|...++......+.+. |+++.. -+.+++.++|
T Consensus 314 ~~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~-g~~~~~--------~d~~~La~~l 382 (425)
T PRK05749 314 GLLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQA-GAAIQV--------EDAEDLAKAV 382 (425)
T ss_pred HHHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHC-CCeEEE--------CCHHHHHHHH
Confidence 457888887 5432 34456999999999999999988888888877777 776653 2578999999
Q ss_pred HHHhc
Q 017557 321 KAVMD 325 (369)
Q Consensus 321 ~~ll~ 325 (369)
.++++
T Consensus 383 ~~ll~ 387 (425)
T PRK05749 383 TYLLT 387 (425)
T ss_pred HHHhc
Confidence 99998
No 49
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=98.66 E-value=1.3e-05 Score=75.13 Aligned_cols=278 Identities=14% Similarity=0.029 Sum_probs=146.7
Q ss_pred HHHHHHHHhhcCCCEEEECC-CCChH--HHHHHhCCCeEEEeCchHHHHHhhhchhhhhcCCCCCccCCCCCCCCCCCCc
Q 017557 8 EPAIEAIVRDIKPNIVFFDF-TYWLP--SLARKLGIKSIAFVTVSPATVGYLLSPERKLRDKFLTEADLLQPPQGFPPSK 84 (369)
Q Consensus 8 ~~~l~~~l~~~~pD~vI~D~-~~~~~--~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 84 (369)
...+...+++.+||+|++.. ..... ..+...++|.+.......... ...
T Consensus 74 ~~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~--------------------------~~~-- 125 (374)
T cd03801 74 ALRLRRLLRRERFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFGR--------------------------PGN-- 125 (374)
T ss_pred HHHHHHHhhhcCCcEEEEechhHHHHHHHHHHhcCCcEEEEeccchhhc--------------------------ccc--
Confidence 34566677777999999887 44433 478888999988664432210 000
Q ss_pred cccCccccchhhhhcccCCCchHHHHHHHHhhccCceeeeccccchhhhhhhhhhhhcC---cceeEeCCCCCCCCCCCc
Q 017557 85 IKLRAHEARGLAAATVKDFGGLSFMERLLLCLTECDAIGFKTCREIEGAYCDCVESQFE---KRVILAGPVLPEPPASVL 161 (369)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~---~~~~~vGp~~~~~~~~~~ 161 (369)
. .... ...........+..+|.+++.|....+. ....++ .++..+..-.........
T Consensus 126 --~-----~~~~--------~~~~~~~~~~~~~~~d~~i~~s~~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~~~ 185 (374)
T cd03801 126 --E-----LGLL--------LKLARALERRALRRADRIIAVSEATREE-----LRELGGVPPEKITVIPNGVDTERFRPA 185 (374)
T ss_pred --c-----hhHH--------HHHHHHHHHHHHHhCCEEEEecHHHHHH-----HHhcCCCCCCcEEEecCcccccccCcc
Confidence 0 0000 0011112234455678888777543332 112222 256666543322111100
Q ss_pred hhHHHhhhccCCCCceEEEeeCCCccC-CHHHHHHHHHHHHhc--CCcEEEEECCCCCCCccccCCchhHHH----HhcC
Q 017557 162 EEEFEMLFSSFKAKSLIFCALGSECVL-KKDQFQELILGFELT--GLPFFAALKPPTGHDTIESALPEGFEE----RVKG 234 (369)
Q Consensus 162 ~~~~~~~l~~~~~~~~v~vs~GS~~~~-~~~~~~~~~~~l~~~--~~~~i~~~~~~~~~~~~~~~lp~~~~~----~~~~ 234 (369)
......-.. ...+..+.+.+|+.... ..+.+-+.+..+... +.++++. |... ....+.+ ....
T Consensus 186 ~~~~~~~~~-~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~l~i~-G~~~--------~~~~~~~~~~~~~~~ 255 (374)
T cd03801 186 PRAARRRLG-IPEDEPVILFVGRLVPRKGVDLLLEALAKLRKEYPDVRLVIV-GDGP--------LREELEALAAELGLG 255 (374)
T ss_pred chHHHhhcC-CcCCCeEEEEecchhhhcCHHHHHHHHHHHhhhcCCeEEEEE-eCcH--------HHHHHHHHHHHhCCC
Confidence 011111111 12234666777776531 223333333333332 3444444 3220 1111111 1235
Q ss_pred CCeeEecccChH---HhhcCCCccceee----cCCCchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecCC
Q 017557 235 RGFVHGGWVQQQ---LILKHPSVGCFVT----HCGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDE 307 (369)
Q Consensus 235 ~~~~v~~~~pq~---~lL~~~~~~~~It----HgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~ 307 (369)
.++.+.+++++. .++..+++ +|. -|..+++.||+++|+|+|+.+. ......+.+. +.|+.++.
T Consensus 256 ~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~~-~~g~~~~~--- 325 (374)
T cd03801 256 DRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVEDG-ETGLLVPP--- 325 (374)
T ss_pred cceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcCC-cceEEeCC---
Confidence 688999999744 47888888 663 2446789999999999998765 3455666666 88888866
Q ss_pred CCccCHHHHHHHHHHHhccCCcchHHHHHHH-HHHHHHHhcCCCCHHHHHHHHHH
Q 017557 308 DGLFTRDGVCKAVKAVMDDDSEVGKDARQNH-AELREFLISPGLENSYVDGFVQE 361 (369)
Q Consensus 308 ~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~a-~~l~~~~~~~~~~~~~~~~~v~~ 361 (369)
.+.+++.++|.++++ ++..++.. +...+.+.+.-+.+...+.+++.
T Consensus 326 ---~~~~~l~~~i~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (374)
T cd03801 326 ---GDPEALAEAILRLLD-----DPELRRRLGEAARERVAERFSWDRVAARTEEV 372 (374)
T ss_pred ---CCHHHHHHHHHHHHc-----ChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHh
Confidence 358999999999998 44433333 33332444344444445555443
No 50
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.64 E-value=1.6e-05 Score=74.69 Aligned_cols=275 Identities=14% Similarity=0.065 Sum_probs=144.2
Q ss_pred cHHHHHHHHh--hcCCCEEEECC-CC---ChHHHHHHhCCCeEEEeCchHHHHHhhhchhhhhcCCCCCccCCCCCCCCC
Q 017557 7 TEPAIEAIVR--DIKPNIVFFDF-TY---WLPSLARKLGIKSIAFVTVSPATVGYLLSPERKLRDKFLTEADLLQPPQGF 80 (369)
Q Consensus 7 ~~~~l~~~l~--~~~pD~vI~D~-~~---~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (369)
....+...++ ..+||+|++.. .+ .+..+++..|+|++......... ..
T Consensus 79 ~~~~~~~~l~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~--------------------------~~ 132 (377)
T cd03798 79 AARALLKLLKLKRFRPDLIHAHFAYPDGFAAALLKRKLGIPLVVTLHGSDVN--------------------------LL 132 (377)
T ss_pred HHHHHHHHHhcccCCCCEEEEeccchHHHHHHHHHHhcCCCEEEEeecchhc--------------------------cc
Confidence 3445667777 77999999887 43 34556777788988765433221 00
Q ss_pred CCCccccCccccchhhhhcccCCCchHHHHHHHHhhccCceeeeccccchhhhhhhhhhhh--cCcceeEeCCCCCCCCC
Q 017557 81 PPSKIKLRAHEARGLAAATVKDFGGLSFMERLLLCLTECDAIGFKTCREIEGAYCDCVESQ--FEKRVILAGPVLPEPPA 158 (369)
Q Consensus 81 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~--~~~~~~~vGp~~~~~~~ 158 (369)
.. .. .. .......+..+|.+++.|...-+. ..+. ...++..++........
T Consensus 133 ~~----~~------~~------------~~~~~~~~~~~d~ii~~s~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~ 185 (377)
T cd03798 133 PR----KR------LL------------RALLRRALRRADAVIAVSEALADE-----LKALGIDPEKVTVIPNGVDTERF 185 (377)
T ss_pred Cc----hh------hH------------HHHHHHHHhcCCeEEeCCHHHHHH-----HHHhcCCCCceEEcCCCcCcccC
Confidence 00 00 00 011223345677777666432221 1111 23456666644432211
Q ss_pred CCchhHHHhhhccCCCCceEEEeeCCCccC-CHHHHHHHHHHHHhc--CCcEEEEECCCCCCCccccCCchhHHHHh---
Q 017557 159 SVLEEEFEMLFSSFKAKSLIFCALGSECVL-KKDQFQELILGFELT--GLPFFAALKPPTGHDTIESALPEGFEERV--- 232 (369)
Q Consensus 159 ~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~-~~~~~~~~~~~l~~~--~~~~i~~~~~~~~~~~~~~~lp~~~~~~~--- 232 (369)
......-..-+.. ..+..+++..|+.... ..+.+-+.++.+... +..+++. |... . .+.+.+..
T Consensus 186 ~~~~~~~~~~~~~-~~~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~~~~~l~i~-g~~~-----~---~~~~~~~~~~~ 255 (377)
T cd03798 186 SPADRAEARKLGL-PEDKKVILFVGRLVPRKGIDYLIEALARLLKKRPDVHLVIV-GDGP-----L---REALEALAAEL 255 (377)
T ss_pred CCcchHHHHhccC-CCCceEEEEeccCccccCHHHHHHHHHHHHhcCCCeEEEEE-cCCc-----c---hHHHHHHHHhc
Confidence 1111100011111 2234667777876542 223344444444333 3333333 3221 0 11222221
Q ss_pred -cCCCeeEecccChH---HhhcCCCccceee----cCCCchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEee
Q 017557 233 -KGRGFVHGGWVQQQ---LILKHPSVGCFVT----HCGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVER 304 (369)
Q Consensus 233 -~~~~~~v~~~~pq~---~lL~~~~~~~~It----HgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~ 304 (369)
...|+.+.+++++. .++..+++ +|. -|..+++.||+++|+|+|+-+.. .....+.+. +.|..++.
T Consensus 256 ~~~~~v~~~g~~~~~~~~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~----~~~~~~~~~-~~g~~~~~ 328 (377)
T cd03798 256 GLEDRVTFLGAVPHEEVPAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDVG----GIPEIITDG-ENGLLVPP 328 (377)
T ss_pred CCcceEEEeCCCCHHHHHHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecCC----ChHHHhcCC-cceeEECC
Confidence 24589999999875 47888888 552 24457899999999999986543 345566666 77887766
Q ss_pred cCCCCccCHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 017557 305 GDEDGLFTRDGVCKAVKAVMDDDSEVGKDARQNHAELREFLISPGLENSYVDGFVQELH 363 (369)
Q Consensus 305 ~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~v~~l~ 363 (369)
-+.+++.++|.++++ ++.. +..++..+.+.+.-+.....+.+.+.+.
T Consensus 329 ------~~~~~l~~~i~~~~~-----~~~~-~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 375 (377)
T cd03798 329 ------GDPEALAEAILRLLA-----DPWL-RLGRAARRRVAERFSWENVAERLLELYR 375 (377)
T ss_pred ------CCHHHHHHHHHHHhc-----CcHH-HHhHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 478999999999998 3332 2233333333333333444555555443
No 51
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.63 E-value=4.2e-06 Score=83.60 Aligned_cols=205 Identities=11% Similarity=0.068 Sum_probs=113.9
Q ss_pred ccchhhhhhhhhhhhcCcceeEeC-CCCCCCCCCCchhHHHhhhccCCCCceEEEeeCCCccCCHHHHHHHHHHHH--h-
Q 017557 127 CREIEGAYCDCVESQFEKRVILAG-PVLPEPPASVLEEEFEMLFSSFKAKSLIFCALGSECVLKKDQFQELILGFE--L- 202 (369)
Q Consensus 127 ~~~l~~~~~~~~~~~~~~~~~~vG-p~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~~l~--~- 202 (369)
...||.+++. ..+-++.+|| |+...-+.....++..+-+.-.+++++|-+--||-.+-=...+..++++.+ .
T Consensus 368 IfPFE~~~y~----~~gv~v~yVGHPL~d~i~~~~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l 443 (608)
T PRK01021 368 ILPFEQNLFK----DSPLRTVYLGHPLVETISSFSPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSL 443 (608)
T ss_pred cCccCHHHHH----hcCCCeEEECCcHHhhcccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHh
Confidence 3457777653 3566899999 887653322233344444444445679999999987533444555666654 2
Q ss_pred -cCCcEEEEECCCCCCCccccCCchhHHHHhcCCC---eeEecccChHHhhcCCCccceeecCCCchHHHHHHhCCcccc
Q 017557 203 -TGLPFFAALKPPTGHDTIESALPEGFEERVKGRG---FVHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVL 278 (369)
Q Consensus 203 -~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~---~~v~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~i~ 278 (369)
.+.+|++...+. ...+.+.+.....+ +.+..--...++++.+++ .+.-+| +.+.|+...|+||++
T Consensus 444 ~~~l~fvvp~a~~--------~~~~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~--aLaaSG-TaTLEaAL~g~PmVV 512 (608)
T PRK01021 444 ASTHQLLVSSANP--------KYDHLILEVLQQEGCLHSHIVPSQFRYELMRECDC--ALAKCG-TIVLETALNQTPTIV 512 (608)
T ss_pred ccCeEEEEecCch--------hhHHHHHHHHhhcCCCCeEEecCcchHHHHHhcCe--eeecCC-HHHHHHHHhCCCEEE
Confidence 345666643322 11112233222212 122110012578999998 888777 467899999999998
Q ss_pred ccc-ccchhHHHHHHhh---h--------cceEEEEeecCCCCccCHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHh
Q 017557 279 LPN-VGDQIINSRLMGE---D--------LKVGVEVERGDEDGLFTRDGVCKAVKAVMDDDSEVGKDARQNHAELREFLI 346 (369)
Q Consensus 279 ~P~-~~DQ~~na~~v~~---~--------~g~G~~l~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~ 346 (369)
+=- ..=-+.-++++.+ . .|-.+..+--..+...|++.|.+++ ++|.+ ++..+++++..+++.+.+.
T Consensus 513 ~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL~d-~~~r~~~~~~l~~lr~~Lg 590 (608)
T PRK01021 513 TCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DILKT-SQSKEKQKDACRDLYQAMN 590 (608)
T ss_pred EEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHHH-HHhcC-HHHHHHHHHHHHHHHHHhc
Confidence 532 1122344566555 1 0111111110001348999999997 77763 3334567777777777775
Q ss_pred cC
Q 017557 347 SP 348 (369)
Q Consensus 347 ~~ 348 (369)
+.
T Consensus 591 ~~ 592 (608)
T PRK01021 591 ES 592 (608)
T ss_pred CC
Confidence 43
No 52
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=98.59 E-value=1.7e-05 Score=74.92 Aligned_cols=146 Identities=18% Similarity=0.178 Sum_probs=88.9
Q ss_pred CceEEEeeCCCccC-CHHHHHHHHHHHHh--cCCcEEEEECCCCCCCccccCCchhHHHH----hcCCCeeEecccChHH
Q 017557 175 KSLIFCALGSECVL-KKDQFQELILGFEL--TGLPFFAALKPPTGHDTIESALPEGFEER----VKGRGFVHGGWVQQQL 247 (369)
Q Consensus 175 ~~~v~vs~GS~~~~-~~~~~~~~~~~l~~--~~~~~i~~~~~~~~~~~~~~~lp~~~~~~----~~~~~~~v~~~~pq~~ 247 (369)
++.+++..|+.... ..+.+.+++..+.. .+.++++.-+.. ..+.+.+. -...++.+.+++|+.+
T Consensus 201 ~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G~~~---------~~~~~~~~~~~~~~~~~v~~~g~~~~~~ 271 (374)
T cd03817 201 DEPVLLYVGRLAKEKNIDFLIRAFARLLKEEPDVKLVIVGDGP---------EREELEELARELGLADRVIFTGFVPREE 271 (374)
T ss_pred CCeEEEEEeeeecccCHHHHHHHHHHHHHhCCCeEEEEEeCCc---------hHHHHHHHHHHcCCCCcEEEeccCChHH
Confidence 34566667776542 23444444444443 345555553221 01122221 1245899999998754
Q ss_pred ---hhcCCCccceeecC----CCchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHH
Q 017557 248 ---ILKHPSVGCFVTHC----GSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAV 320 (369)
Q Consensus 248 ---lL~~~~~~~~ItHg----G~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai 320 (369)
+++++++ +|..+ ..+++.||+++|+|+|+... ...+..+.+. +.|..++..+ . ++.+++
T Consensus 272 ~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i~~~-~~g~~~~~~~------~-~~~~~i 337 (374)
T cd03817 272 LPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLVADG-ENGFLFPPGD------E-ALAEAL 337 (374)
T ss_pred HHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeCC----CChhhheecC-ceeEEeCCCC------H-HHHHHH
Confidence 7888998 66433 34689999999999998653 3456677777 8898887653 2 899999
Q ss_pred HHHhccCCcchHHHHHHHHHHHHH
Q 017557 321 KAVMDDDSEVGKDARQNHAELREF 344 (369)
Q Consensus 321 ~~ll~~~~~~~~~~~~~a~~l~~~ 344 (369)
.+++++ .+....+++++++..+.
T Consensus 338 ~~l~~~-~~~~~~~~~~~~~~~~~ 360 (374)
T cd03817 338 LRLLQD-PELRRRLSKNAEESAEK 360 (374)
T ss_pred HHHHhC-hHHHHHHHHHHHHHHHH
Confidence 999983 22123455555554443
No 53
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.59 E-value=6.9e-06 Score=78.53 Aligned_cols=203 Identities=14% Similarity=0.085 Sum_probs=110.9
Q ss_pred ccchhhhhhhhhhhhcCcceeEeC-CCCCCCCCCCchhHHHhhhccCCCCceEEEeeCCCccCCHHHHHHHHHHHH---h
Q 017557 127 CREIEGAYCDCVESQFEKRVILAG-PVLPEPPASVLEEEFEMLFSSFKAKSLIFCALGSECVLKKDQFQELILGFE---L 202 (369)
Q Consensus 127 ~~~l~~~~~~~~~~~~~~~~~~vG-p~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~~l~---~ 202 (369)
...||.+++ +..+-++.||| |+...-.....+....+.+ -.+++++|.+--||-.+--...+..++++.+ +
T Consensus 140 ifPFE~~~y----~~~g~~~~~VGHPl~d~~~~~~~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~ 214 (373)
T PF02684_consen 140 IFPFEPEFY----KKHGVPVTYVGHPLLDEVKPEPDRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKK 214 (373)
T ss_pred CCcccHHHH----hccCCCeEEECCcchhhhccCCCHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 345777765 33456799999 8876543332333333333 2345679999999986522333444555532 2
Q ss_pred --cCCcEEEEECCCCCCCccccCCchhHHHHhc--CCCeeEe-cccChHHhhcCCCccceeecCCCchHHHHHHhCCccc
Q 017557 203 --TGLPFFAALKPPTGHDTIESALPEGFEERVK--GRGFVHG-GWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLV 277 (369)
Q Consensus 203 --~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~--~~~~~v~-~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~i 277 (369)
.+.+|++...+.. ....+.+... ..++.+. ..-.-.++++.+++ .+.-+| +.+.|+...|+|||
T Consensus 215 ~~p~l~fvvp~a~~~--------~~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~--al~~SG-TaTLE~Al~g~P~V 283 (373)
T PF02684_consen 215 QRPDLQFVVPVAPEV--------HEELIEEILAEYPPDVSIVIIEGESYDAMAAADA--ALAASG-TATLEAALLGVPMV 283 (373)
T ss_pred hCCCeEEEEecCCHH--------HHHHHHHHHHhhCCCCeEEEcCCchHHHHHhCcc--hhhcCC-HHHHHHHHhCCCEE
Confidence 3566666653321 1111111111 1222222 22245668888888 666666 56889999999998
Q ss_pred cccc-ccchhHHHHHHhhhcceEEEEe----ecC-----CCCccCHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhc
Q 017557 278 LLPN-VGDQIINSRLMGEDLKVGVEVE----RGD-----EDGLFTRDGVCKAVKAVMDDDSEVGKDARQNHAELREFLIS 347 (369)
Q Consensus 278 ~~P~-~~DQ~~na~~v~~~~g~G~~l~----~~~-----~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~ 347 (369)
++=- ..=-+.-|+++.+. .. +.+. ..+ .+...|++.+.+++.+++.+ .+.....++..+++.+.+..
T Consensus 284 v~Yk~~~lt~~iak~lvk~-~~-isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~-~~~~~~~~~~~~~~~~~~~~ 360 (373)
T PF02684_consen 284 VAYKVSPLTYFIAKRLVKV-KY-ISLPNIIAGREVVPELIQEDATPENIAAELLELLEN-PEKRKKQKELFREIRQLLGP 360 (373)
T ss_pred EEEcCcHHHHHHHHHhhcC-CE-eechhhhcCCCcchhhhcccCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHhhhh
Confidence 8632 22345566666554 32 1111 000 14458999999999999983 11122333444445544443
Q ss_pred C
Q 017557 348 P 348 (369)
Q Consensus 348 ~ 348 (369)
.
T Consensus 361 ~ 361 (373)
T PF02684_consen 361 G 361 (373)
T ss_pred c
Confidence 3
No 54
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=98.56 E-value=4e-05 Score=72.10 Aligned_cols=130 Identities=14% Similarity=0.074 Sum_probs=81.6
Q ss_pred CceEEEeeCCCccC-CHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhcCCCeeEecccChHH---hhc
Q 017557 175 KSLIFCALGSECVL-KKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGRGFVHGGWVQQQL---ILK 250 (369)
Q Consensus 175 ~~~v~vs~GS~~~~-~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~---lL~ 250 (369)
...+++..|+.... ..+.+.+.+..+...+.++++. |.... ...... ......++.+.+|+++.+ +++
T Consensus 190 ~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~l~i~-G~~~~------~~~~~~-~~~~~~~v~~~g~~~~~~~~~~~~ 261 (359)
T cd03823 190 GRLRFGFIGQLTPHKGVDLLLEAFKRLPRGDIELVIV-GNGLE------LEEESY-ELEGDPRVEFLGAYPQEEIDDFYA 261 (359)
T ss_pred CceEEEEEecCccccCHHHHHHHHHHHHhcCcEEEEE-cCchh------hhHHHH-hhcCCCeEEEeCCCCHHHHHHHHH
Confidence 34666777876542 2333444444443335666555 33211 000000 001246899999997654 688
Q ss_pred CCCccceeec----CCC-chHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHHHhc
Q 017557 251 HPSVGCFVTH----CGS-GSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAVMD 325 (369)
Q Consensus 251 ~~~~~~~ItH----gG~-~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ll~ 325 (369)
.+++ +|+. .|. .++.||+++|+|+|+-+. ..+...+.+. +.|+.+... +.+++.++|.++++
T Consensus 262 ~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i~~~-~~g~~~~~~------d~~~l~~~i~~l~~ 328 (359)
T cd03823 262 EIDV--LVVPSIWPENFPLVIREALAAGVPVIASDI----GGMAELVRDG-VNGLLFPPG------DAEDLAAALERLID 328 (359)
T ss_pred hCCE--EEEcCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHhcCC-CcEEEECCC------CHHHHHHHHHHHHh
Confidence 8998 6632 333 478999999999998654 3456667766 789888764 58999999999998
No 55
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.54 E-value=1.5e-05 Score=74.26 Aligned_cols=195 Identities=18% Similarity=0.107 Sum_probs=104.1
Q ss_pred HhhccCceeeeccccchhhhhhhhhhhhcCcceeEeCCCCCCCCCCCchhHHHhhhccCCCCceEEEeeCCCccC-CHHH
Q 017557 114 LCLTECDAIGFKTCREIEGAYCDCVESQFEKRVILAGPVLPEPPASVLEEEFEMLFSSFKAKSLIFCALGSECVL-KKDQ 192 (369)
Q Consensus 114 ~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~-~~~~ 192 (369)
..++.+|.+++.|...... .....+.++..+++-......... ...+..+++.+|+.... ..+.
T Consensus 131 ~~~~~~d~ii~~s~~~~~~-----~~~~~~~~~~vi~~~~~~~~~~~~----------~~~~~~~i~~~g~~~~~K~~~~ 195 (348)
T cd03820 131 LLYRRADAVVVLTEEDRAL-----YYKKFNKNVVVIPNPLPFPPEEPS----------SDLKSKRILAVGRLVPQKGFDL 195 (348)
T ss_pred HHHhcCCEEEEeCHHHHHH-----hhccCCCCeEEecCCcChhhcccc----------CCCCCcEEEEEEeeccccCHHH
Confidence 3445678777777554211 112334456666644432211100 12233556666776542 2344
Q ss_pred HHHHHHHHHh--cCCcEEEEECCCCCCCccccCCchhHHHHhcCCCeeEecccC-hHHhhcCCCccceeecCC----Cch
Q 017557 193 FQELILGFEL--TGLPFFAALKPPTGHDTIESALPEGFEERVKGRGFVHGGWVQ-QQLILKHPSVGCFVTHCG----SGS 265 (369)
Q Consensus 193 ~~~~~~~l~~--~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~p-q~~lL~~~~~~~~ItHgG----~~s 265 (369)
+.+.++.+.. .+.+++++ |.... ...+.+...+.-...++.+.++.. ...+++.+++ +|.-.. .++
T Consensus 196 l~~~~~~l~~~~~~~~l~i~-G~~~~----~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~ 268 (348)
T cd03820 196 LIEAWAKIAKKHPDWKLRIV-GDGPE----REALEALIKELGLEDRVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMV 268 (348)
T ss_pred HHHHHHHHHhcCCCeEEEEE-eCCCC----HHHHHHHHHHcCCCCeEEEcCCcchHHHHHHhCCE--EEeCccccccCHH
Confidence 4444444432 23444444 32210 111111011111134677777633 3568899988 665542 468
Q ss_pred HHHHHHhCCcccccccccchhHHHHHHhhhcc-eEEEEeecCCCCccCHHHHHHHHHHHhccCCcchHHHHHHHHHHHHH
Q 017557 266 LSEAMVNECQLVLLPNVGDQIINSRLMGEDLK-VGVEVERGDEDGLFTRDGVCKAVKAVMDDDSEVGKDARQNHAELREF 344 (369)
Q Consensus 266 ~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g-~G~~l~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~ 344 (369)
+.||+++|+|+|+.+..+.+ ..+.+. | .|+.++. -+.+++.++|.++++ ++..++++.+-+..
T Consensus 269 ~~Ea~a~G~Pvi~~~~~~~~----~~~~~~-~~~g~~~~~------~~~~~~~~~i~~ll~-----~~~~~~~~~~~~~~ 332 (348)
T cd03820 269 LLEAMAFGLPVISFDCPTGP----SEIIED-GVNGLLVPN------GDVEALAEALLRLME-----DEELRKRMGANARE 332 (348)
T ss_pred HHHHHHcCCCEEEecCCCch----Hhhhcc-CcceEEeCC------CCHHHHHHHHHHHHc-----CHHHHHHHHHHHHH
Confidence 99999999999987654433 233344 5 8888765 367999999999998 55555554444433
Q ss_pred Hh
Q 017557 345 LI 346 (369)
Q Consensus 345 ~~ 346 (369)
+.
T Consensus 333 ~~ 334 (348)
T cd03820 333 SA 334 (348)
T ss_pred HH
Confidence 33
No 56
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.51 E-value=2.8e-06 Score=81.32 Aligned_cols=130 Identities=15% Similarity=0.116 Sum_probs=82.1
Q ss_pred CCceEEEeeCCCccC-CHHHHHHHHHHHHhcCC-cEEEEECCCCCCCccccCCchhHHHH---hc--CCCeeEecccChH
Q 017557 174 AKSLIFCALGSECVL-KKDQFQELILGFELTGL-PFFAALKPPTGHDTIESALPEGFEER---VK--GRGFVHGGWVQQQ 246 (369)
Q Consensus 174 ~~~~v~vs~GS~~~~-~~~~~~~~~~~l~~~~~-~~i~~~~~~~~~~~~~~~lp~~~~~~---~~--~~~~~v~~~~pq~ 246 (369)
+++.|++++|..... ....+..+++++..... ++.++..... ..-+.+.+. .. .+++.+.+..+..
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~-------~~~~~l~~~~~~~~~~~~~v~~~~~~~~~ 269 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHP-------RTRPRIREAGLEFLGHHPNVLLISPLGYL 269 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCC-------ChHHHHHHHHHhhccCCCCEEEECCcCHH
Confidence 355788888876643 34557777787764322 2443332210 011122221 11 3578777665543
Q ss_pred ---HhhcCCCccceeecCCCchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHHH
Q 017557 247 ---LILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAV 323 (369)
Q Consensus 247 ---~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~l 323 (369)
.+++.+++ ||+.+| |.+.|++++|+|+|.++.. |. +..+.+. |+++.+. -+.+++.++|.++
T Consensus 270 ~~~~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~~~-g~~~~~~-------~~~~~i~~~i~~l 334 (363)
T cd03786 270 YFLLLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETVES-GTNVLVG-------TDPEAILAAIEKL 334 (363)
T ss_pred HHHHHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhhhe-eeEEecC-------CCHHHHHHHHHHH
Confidence 46788999 999999 7778999999999998743 22 4445556 7765553 2478999999999
Q ss_pred hc
Q 017557 324 MD 325 (369)
Q Consensus 324 l~ 325 (369)
++
T Consensus 335 l~ 336 (363)
T cd03786 335 LS 336 (363)
T ss_pred hc
Confidence 98
No 57
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.49 E-value=1.3e-05 Score=76.49 Aligned_cols=79 Identities=14% Similarity=0.151 Sum_probs=61.5
Q ss_pred CCCeeEecccChHH---hhcCCCccceeec----------CCCchHHHHHHhCCcccccccccchhHHHHHHhhhcceEE
Q 017557 234 GRGFVHGGWVQQQL---ILKHPSVGCFVTH----------CGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGV 300 (369)
Q Consensus 234 ~~~~~v~~~~pq~~---lL~~~~~~~~ItH----------gG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~ 300 (369)
..++.+.+++|+.+ +++.+++ +|.- |-.+++.||+++|+|+|+-+.. .+...+.+. +.|.
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i~~~-~~g~ 316 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAVEDG-ETGL 316 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----CchhheecC-CeeE
Confidence 35788889998644 6888898 6532 2247899999999999987653 366677777 8898
Q ss_pred EEeecCCCCccCHHHHHHHHHHHhc
Q 017557 301 EVERGDEDGLFTRDGVCKAVKAVMD 325 (369)
Q Consensus 301 ~l~~~~~~~~~~~~~l~~ai~~ll~ 325 (369)
.++.. +.+++.++|.++++
T Consensus 317 ~~~~~------d~~~l~~~i~~l~~ 335 (367)
T cd05844 317 LVPEG------DVAALAAALGRLLA 335 (367)
T ss_pred EECCC------CHHHHHHHHHHHHc
Confidence 88753 67899999999998
No 58
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.48 E-value=6.6e-05 Score=71.72 Aligned_cols=112 Identities=12% Similarity=0.075 Sum_probs=72.8
Q ss_pred CCeeEecccCh-HHhhcCCCccceeec----CCCchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecCCCC
Q 017557 235 RGFVHGGWVQQ-QLILKHPSVGCFVTH----CGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDG 309 (369)
Q Consensus 235 ~~~~v~~~~pq-~~lL~~~~~~~~ItH----gG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~ 309 (369)
.++.+.++.++ ..+++.+++ +|.- |...++.||+++|+|+|+-.. ...+..+++- ..|..++..
T Consensus 253 ~~v~~~g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~~----~~~~e~i~~~-~~G~~~~~~---- 321 (371)
T cd04962 253 DDVLFLGKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVASNA----GGIPEVVKHG-ETGFLVDVG---- 321 (371)
T ss_pred ceEEEecCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEeCC----CCchhhhcCC-CceEEcCCC----
Confidence 46888888765 458899988 6622 334699999999999998543 3456666666 678777653
Q ss_pred ccCHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 017557 310 LFTRDGVCKAVKAVMDDDSEVGKDARQNHAELREFLISPGLENSYVDGFVQELH 363 (369)
Q Consensus 310 ~~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~v~~l~ 363 (369)
+.+++.++|.+++++ .+...++++++++. +.+.-+.+..++.+.+.+.
T Consensus 322 --~~~~l~~~i~~l~~~-~~~~~~~~~~~~~~---~~~~fs~~~~~~~~~~~y~ 369 (371)
T cd04962 322 --DVEAMAEYALSLLED-DELWQEFSRAARNR---AAERFDSERIVPQYEALYR 369 (371)
T ss_pred --CHHHHHHHHHHHHhC-HHHHHHHHHHHHHH---HHHhCCHHHHHHHHHHHHH
Confidence 688999999999972 11123344444443 2333344455555555443
No 59
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=98.43 E-value=0.00011 Score=70.67 Aligned_cols=79 Identities=15% Similarity=0.122 Sum_probs=61.8
Q ss_pred CCCeeEecccChHH---hhcCCCccceeecC----CCchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecC
Q 017557 234 GRGFVHGGWVQQQL---ILKHPSVGCFVTHC----GSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGD 306 (369)
Q Consensus 234 ~~~~~v~~~~pq~~---lL~~~~~~~~ItHg----G~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~ 306 (369)
..|+.+.+|+|+.+ +++.+++ +++.+ -..++.||+++|+|+|+-... .....+++. +.|+.++.
T Consensus 282 ~~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~----~~~e~i~~~-~~g~~~~~-- 352 (398)
T cd03800 282 IDRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVG----GPRDIVVDG-VTGLLVDP-- 352 (398)
T ss_pred CceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCC----CHHHHccCC-CCeEEeCC--
Confidence 35899999999765 5888888 77432 236899999999999987643 355567777 88998865
Q ss_pred CCCccCHHHHHHHHHHHhc
Q 017557 307 EDGLFTRDGVCKAVKAVMD 325 (369)
Q Consensus 307 ~~~~~~~~~l~~ai~~ll~ 325 (369)
-+.+++.++|.++++
T Consensus 353 ----~~~~~l~~~i~~l~~ 367 (398)
T cd03800 353 ----RDPEALAAALRRLLT 367 (398)
T ss_pred ----CCHHHHHHHHHHHHh
Confidence 368999999999998
No 60
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.42 E-value=0.00031 Score=66.34 Aligned_cols=78 Identities=14% Similarity=0.202 Sum_probs=57.2
Q ss_pred CCCeeEec-ccChH---HhhcCCCccceee--c----CCCchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEe
Q 017557 234 GRGFVHGG-WVQQQ---LILKHPSVGCFVT--H----CGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVE 303 (369)
Q Consensus 234 ~~~~~v~~-~~pq~---~lL~~~~~~~~It--H----gG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~ 303 (369)
..++.+.+ |+|+. .+++.+++ +|. + |..+++.||+++|+|+|+-+..+ ...+... +.|+.+.
T Consensus 246 ~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~-~~g~~~~ 317 (366)
T cd03822 246 ADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDG-GTGLLVP 317 (366)
T ss_pred CCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeC-CCcEEEc
Confidence 45777665 48764 58888888 652 2 23458899999999999977543 3445556 7888777
Q ss_pred ecCCCCccCHHHHHHHHHHHhc
Q 017557 304 RGDEDGLFTRDGVCKAVKAVMD 325 (369)
Q Consensus 304 ~~~~~~~~~~~~l~~ai~~ll~ 325 (369)
.. +.+++.+++.++++
T Consensus 318 ~~------d~~~~~~~l~~l~~ 333 (366)
T cd03822 318 PG------DPAALAEAIRRLLA 333 (366)
T ss_pred CC------CHHHHHHHHHHHHc
Confidence 63 58899999999998
No 61
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=98.39 E-value=0.00013 Score=68.19 Aligned_cols=133 Identities=13% Similarity=0.054 Sum_probs=81.3
Q ss_pred CceEEEeeCCCccC-CHHHHHHHHHHHHh--cCCcEEEEECCCCCCCccccCCchh-HHHHhcCCCeeEecccCh-HHhh
Q 017557 175 KSLIFCALGSECVL-KKDQFQELILGFEL--TGLPFFAALKPPTGHDTIESALPEG-FEERVKGRGFVHGGWVQQ-QLIL 249 (369)
Q Consensus 175 ~~~v~vs~GS~~~~-~~~~~~~~~~~l~~--~~~~~i~~~~~~~~~~~~~~~lp~~-~~~~~~~~~~~v~~~~pq-~~lL 249 (369)
++.+++..|+.... ..+.+.+.++.+.. .+.+++++-+.... ...... ........++.+.++..+ ..++
T Consensus 187 ~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~-----~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~ 261 (359)
T cd03808 187 DDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDEE-----NPAAILEIEKLGLEGRVEFLGFRDDVPELL 261 (359)
T ss_pred CCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCcc-----hhhHHHHHHhcCCcceEEEeeccccHHHHH
Confidence 44777778876542 23444444444443 34455554332211 110000 111122457777777544 4589
Q ss_pred cCCCccceeecCC----CchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHHHhc
Q 017557 250 KHPSVGCFVTHCG----SGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAVMD 325 (369)
Q Consensus 250 ~~~~~~~~ItHgG----~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ll~ 325 (369)
+.+++ +|.-+. .+++.||+++|+|+|+-+.. .+...+.+. +.|+.++.. +.+++.++|.+++.
T Consensus 262 ~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~----~~~~~i~~~-~~g~~~~~~------~~~~~~~~i~~l~~ 328 (359)
T cd03808 262 AAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVP----GCREAVIDG-VNGFLVPPG------DAEALADAIERLIE 328 (359)
T ss_pred HhccE--EEecCcccCcchHHHHHHHcCCCEEEecCC----CchhhhhcC-cceEEECCC------CHHHHHHHHHHHHh
Confidence 99998 775433 57899999999999986543 344556666 788887653 68999999999887
No 62
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.34 E-value=8e-07 Score=84.71 Aligned_cols=140 Identities=16% Similarity=0.132 Sum_probs=81.5
Q ss_pred CCCceEEEeeCCCccCC-H---HHHHHHHHHHHhc-CCcEEEEECCCCCCCccccCCchhHHHHhcC-CCeeEecccCh-
Q 017557 173 KAKSLIFCALGSECVLK-K---DQFQELILGFELT-GLPFFAALKPPTGHDTIESALPEGFEERVKG-RGFVHGGWVQQ- 245 (369)
Q Consensus 173 ~~~~~v~vs~GS~~~~~-~---~~~~~~~~~l~~~-~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~-~~~~v~~~~pq- 245 (369)
.+++.+++++=...... + ..+.+++++|... ++++||.+.... ..-..+.+.+.. +|+++..-++.
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p-------~~~~~i~~~l~~~~~v~~~~~l~~~ 250 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNP-------RGSDIIIEKLKKYDNVRLIEPLGYE 250 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-H-------HHHHHHHHHHTT-TTEEEE----HH
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCc-------hHHHHHHHHhcccCCEEEECCCCHH
Confidence 45679999985544444 3 4556666666655 788999986431 111122222221 38888876655
Q ss_pred --HHhhcCCCccceeecCCCchHH-HHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHH
Q 017557 246 --QLILKHPSVGCFVTHCGSGSLS-EAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKA 322 (369)
Q Consensus 246 --~~lL~~~~~~~~ItHgG~~s~~-Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ 322 (369)
..+|+++++ +|+..| ++. ||.+.|+|+|.+=..++.+. .... |..+.+. .+.+.|.++|++
T Consensus 251 ~~l~ll~~a~~--vvgdSs--GI~eEa~~lg~P~v~iR~~geRqe----~r~~-~~nvlv~-------~~~~~I~~ai~~ 314 (346)
T PF02350_consen 251 EYLSLLKNADL--VVGDSS--GIQEEAPSLGKPVVNIRDSGERQE----GRER-GSNVLVG-------TDPEAIIQAIEK 314 (346)
T ss_dssp HHHHHHHHESE--EEESSH--HHHHHGGGGT--EEECSSS-S-HH----HHHT-TSEEEET-------SSHHHHHHHHHH
T ss_pred HHHHHHhcceE--EEEcCc--cHHHHHHHhCCeEEEecCCCCCHH----HHhh-cceEEeC-------CCHHHHHHHHHH
Confidence 458889999 999999 777 99999999999922222221 1223 5665532 589999999999
Q ss_pred HhccCCcchHHHHHHHHH
Q 017557 323 VMDDDSEVGKDARQNHAE 340 (369)
Q Consensus 323 ll~~~~~~~~~~~~~a~~ 340 (369)
++. +.....+++.
T Consensus 315 ~l~-----~~~~~~~~~~ 327 (346)
T PF02350_consen 315 ALS-----DKDFYRKLKN 327 (346)
T ss_dssp HHH------HHHHHHHHC
T ss_pred HHh-----ChHHHHhhcc
Confidence 997 4444444443
No 63
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.31 E-value=4.4e-06 Score=67.72 Aligned_cols=121 Identities=12% Similarity=0.167 Sum_probs=82.4
Q ss_pred ceEEEeeCCCccCCH---HHHHHHHHHHHhcCC-cEEEEECCCCCCCccccCCchhHHHHhcCCCeeE--ecccCh-HHh
Q 017557 176 SLIFCALGSECVLKK---DQFQELILGFELTGL-PFFAALKPPTGHDTIESALPEGFEERVKGRGFVH--GGWVQQ-QLI 248 (369)
Q Consensus 176 ~~v~vs~GS~~~~~~---~~~~~~~~~l~~~~~-~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v--~~~~pq-~~l 248 (369)
..+||+-||.....- -.-++..+.|...|. +.+++.|.+.. -.++......+-.++.+ .+|-|- .+.
T Consensus 4 ~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~------~~~d~~~~~~k~~gl~id~y~f~psl~e~ 77 (170)
T KOG3349|consen 4 MTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQP------FFGDPIDLIRKNGGLTIDGYDFSPSLTED 77 (170)
T ss_pred eEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCcc------CCCCHHHhhcccCCeEEEEEecCccHHHH
Confidence 389999999874211 112345566666664 57788876521 11222221112234444 346676 567
Q ss_pred hcCCCccceeecCCCchHHHHHHhCCccccccc----ccchhHHHHHHhhhcceEEEEeec
Q 017557 249 LKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPN----VGDQIINSRLMGEDLKVGVEVERG 305 (369)
Q Consensus 249 L~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~P~----~~DQ~~na~~v~~~~g~G~~l~~~ 305 (369)
.+.+++ +|+|+|+||++|.+..|+|.|+++- -.+|-.-|..+++. |-=+.-...
T Consensus 78 I~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~e-gyL~~C~ps 135 (170)
T KOG3349|consen 78 IRSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEE-GYLYYCTPS 135 (170)
T ss_pred HhhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhc-CcEEEeecc
Confidence 777999 9999999999999999999999995 35899999999998 776666554
No 64
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.28 E-value=5.3e-05 Score=71.30 Aligned_cols=220 Identities=13% Similarity=0.098 Sum_probs=128.1
Q ss_pred ccchhhhhhhhhhhhcCcceeEeC-CCCCCCCCCCchhHHHhhhccCCCCceEEEeeCCCccCCHHHHHHHHHH---HH-
Q 017557 127 CREIEGAYCDCVESQFEKRVILAG-PVLPEPPASVLEEEFEMLFSSFKAKSLIFCALGSECVLKKDQFQELILG---FE- 201 (369)
Q Consensus 127 ~~~l~~~~~~~~~~~~~~~~~~vG-p~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~~---l~- 201 (369)
...||+++++ ..+-++.||| |+....+..+..+.+.+-+.-..+++++.+--||-.+--...+..+.++ |.
T Consensus 143 ilPFE~~~y~----k~g~~~~yVGHpl~d~i~~~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~ 218 (381)
T COG0763 143 ILPFEPAFYD----KFGLPCTYVGHPLADEIPLLPDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKA 218 (381)
T ss_pred ecCCCHHHHH----hcCCCeEEeCChhhhhccccccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHh
Confidence 3456776653 3444589999 8776654333445555556555667799999999876222333333333 33
Q ss_pred -hcCCcEEEEECCCCCCCccccCCchhHHHH-hcCCCeeEeccc-Ch--HHhhcCCCccceeecCCCchHHHHHHhCCcc
Q 017557 202 -LTGLPFFAALKPPTGHDTIESALPEGFEER-VKGRGFVHGGWV-QQ--QLILKHPSVGCFVTHCGSGSLSEAMVNECQL 276 (369)
Q Consensus 202 -~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~-~~~~~~~v~~~~-pq--~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~ 276 (369)
..+.+|++-+.+.. .. ...+. .+.......-++ ++ .+++..+++ .+.-+|- -+.|+..+|+||
T Consensus 219 ~~~~~~~vlp~~~~~-----~~----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aD~--al~aSGT-~tLE~aL~g~P~ 286 (381)
T COG0763 219 RYPDLKFVLPLVNAK-----YR----RIIEEALKWEVAGLSLILIDGEKRKAFAAADA--ALAASGT-ATLEAALAGTPM 286 (381)
T ss_pred hCCCceEEEecCcHH-----HH----HHHHHHhhccccCceEEecCchHHHHHHHhhH--HHHhccH-HHHHHHHhCCCE
Confidence 24577777764421 00 11111 111110011111 22 236777777 7777764 578999999999
Q ss_pred cccccc-cchhHHHHHHhhhcceEE-------EEeecCCCCccCHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhcC
Q 017557 277 VLLPNV-GDQIINSRLMGEDLKVGV-------EVERGDEDGLFTRDGVCKAVKAVMDDDSEVGKDARQNHAELREFLISP 348 (369)
Q Consensus 277 i~~P~~-~DQ~~na~~v~~~~g~G~-------~l~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~ 348 (369)
|+.=-. .=-+.-++++.+.|=+++ .+-.+=.+...+++.|.+++..++.+ +++.+.+++..+++.+.++..
T Consensus 287 Vv~Yk~~~it~~iak~lvk~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~-~~~~~~~~~~~~~l~~~l~~~ 365 (381)
T COG0763 287 VVAYKVKPITYFIAKRLVKLPYVSLPNILAGREIVPELIQEDCTPENLARALEELLLN-GDRREALKEKFRELHQYLRED 365 (381)
T ss_pred EEEEeccHHHHHHHHHhccCCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcC-hHhHHHHHHHHHHHHHHHcCC
Confidence 875211 112345566665533332 11000012248899999999999984 223468999999999999977
Q ss_pred CCCHHHHHHHHHHHH
Q 017557 349 GLENSYVDGFVQELH 363 (369)
Q Consensus 349 ~~~~~~~~~~v~~l~ 363 (369)
+.++.+.+.+++.+.
T Consensus 366 ~~~e~aA~~vl~~~~ 380 (381)
T COG0763 366 PASEIAAQAVLELLL 380 (381)
T ss_pred cHHHHHHHHHHHHhc
Confidence 677777777776653
No 65
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.25 E-value=0.00017 Score=68.28 Aligned_cols=128 Identities=14% Similarity=0.057 Sum_probs=81.2
Q ss_pred ceEEEeeCCCccCCHHHHHHHHHHHHhcC-CcEEEEECCCCCCCccccCCchhHHHH----hcCCCeeEecccChH---H
Q 017557 176 SLIFCALGSECVLKKDQFQELILGFELTG-LPFFAALKPPTGHDTIESALPEGFEER----VKGRGFVHGGWVQQQ---L 247 (369)
Q Consensus 176 ~~v~vs~GS~~~~~~~~~~~~~~~l~~~~-~~~i~~~~~~~~~~~~~~~lp~~~~~~----~~~~~~~v~~~~pq~---~ 247 (369)
..+++..|+... ......+++++.... ..++++-... ....+.+. -...|+.+.+|+|+. .
T Consensus 191 ~~~i~~~G~~~~--~K~~~~li~a~~~l~~~~l~i~G~g~---------~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~ 259 (357)
T cd03795 191 RPFFLFVGRLVY--YKGLDVLLEAAAALPDAPLVIVGEGP---------LEAELEALAAALGLLDRVRFLGRLDDEEKAA 259 (357)
T ss_pred CcEEEEeccccc--ccCHHHHHHHHHhccCcEEEEEeCCh---------hHHHHHHHHHhcCCcceEEEcCCCCHHHHHH
Confidence 356677777653 223455666665444 5555553221 11122221 125699999999975 4
Q ss_pred hhcCCCccceeec---CCC-chHHHHHHhCCcccccccccchhHHHHHHhh-hcceEEEEeecCCCCccCHHHHHHHHHH
Q 017557 248 ILKHPSVGCFVTH---CGS-GSLSEAMVNECQLVLLPNVGDQIINSRLMGE-DLKVGVEVERGDEDGLFTRDGVCKAVKA 322 (369)
Q Consensus 248 lL~~~~~~~~ItH---gG~-~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~-~~g~G~~l~~~~~~~~~~~~~l~~ai~~ 322 (369)
+++.+++.++.++ .|. .++.||+++|+|+|+-...+... .+.. . +.|...+. -+.+++.++|.+
T Consensus 260 ~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~----~i~~~~-~~g~~~~~------~d~~~~~~~i~~ 328 (357)
T cd03795 260 LLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGS----YVNLHG-VTGLVVPP------GDPAALAEAIRR 328 (357)
T ss_pred HHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchh----HHhhCC-CceEEeCC------CCHHHHHHHHHH
Confidence 7888888434342 343 47999999999999976544433 3332 5 78887765 368999999999
Q ss_pred Hhc
Q 017557 323 VMD 325 (369)
Q Consensus 323 ll~ 325 (369)
+++
T Consensus 329 l~~ 331 (357)
T cd03795 329 LLE 331 (357)
T ss_pred HHH
Confidence 998
No 66
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.24 E-value=0.0003 Score=65.49 Aligned_cols=132 Identities=14% Similarity=0.081 Sum_probs=76.8
Q ss_pred CceEEEeeCCCccC-CHHHHHHHHHHHHhc--CCcEEEEECCCCCCCccccCCchhHHHHh-cCCCeeEecccCh-HHhh
Q 017557 175 KSLIFCALGSECVL-KKDQFQELILGFELT--GLPFFAALKPPTGHDTIESALPEGFEERV-KGRGFVHGGWVQQ-QLIL 249 (369)
Q Consensus 175 ~~~v~vs~GS~~~~-~~~~~~~~~~~l~~~--~~~~i~~~~~~~~~~~~~~~lp~~~~~~~-~~~~~~v~~~~pq-~~lL 249 (369)
+..+++..|+.... ..+.+-+.++.+... +.+++++ |.... ...+- ...+.. ...++.+.++.+. ..++
T Consensus 188 ~~~~i~~~g~~~~~k~~~~~i~~~~~l~~~~~~~~l~i~-G~~~~----~~~~~-~~~~~~~~~~~v~~~g~~~~~~~~~ 261 (353)
T cd03811 188 DGPVILAVGRLSPQKGFDTLIRAFALLRKEGPDARLVIL-GDGPL----REELE-ALAKELGLADRVHFLGFQSNPYPYL 261 (353)
T ss_pred CceEEEEEecchhhcChHHHHHHHHHhhhcCCCceEEEE-cCCcc----HHHHH-HHHHhcCCCccEEEecccCCHHHHH
Confidence 44677777876532 223333444444332 4555554 32210 01110 111111 1457888888765 4588
Q ss_pred cCCCccceeec----CCCchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecCCCCccCHHHH---HHHHHH
Q 017557 250 KHPSVGCFVTH----CGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGLFTRDGV---CKAVKA 322 (369)
Q Consensus 250 ~~~~~~~~ItH----gG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l---~~ai~~ 322 (369)
+.+++ +|.- |..+++.||+++|+|+|+-... .....+.+. +.|+..+.. +.+.+ .+++..
T Consensus 262 ~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i~~~-~~g~~~~~~------~~~~~~~~~~~i~~ 328 (353)
T cd03811 262 KAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREILEDG-ENGLLVPVG------DEAALAAAALALLD 328 (353)
T ss_pred HhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHhcCC-CceEEECCC------CHHHHHHHHHHHHh
Confidence 99998 6632 3356899999999999985433 556677777 889988764 56666 455555
Q ss_pred Hhc
Q 017557 323 VMD 325 (369)
Q Consensus 323 ll~ 325 (369)
++.
T Consensus 329 ~~~ 331 (353)
T cd03811 329 LLL 331 (353)
T ss_pred ccC
Confidence 555
No 67
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.23 E-value=0.00072 Score=64.00 Aligned_cols=153 Identities=9% Similarity=0.013 Sum_probs=87.9
Q ss_pred CceEEEeeCCCccC-CHHHHHHHHHHHHhc--CCcEEEEECCCCCCCccccCCchhHHH---Hh-cCCCeeEecccCh-H
Q 017557 175 KSLIFCALGSECVL-KKDQFQELILGFELT--GLPFFAALKPPTGHDTIESALPEGFEE---RV-KGRGFVHGGWVQQ-Q 246 (369)
Q Consensus 175 ~~~v~vs~GS~~~~-~~~~~~~~~~~l~~~--~~~~i~~~~~~~~~~~~~~~lp~~~~~---~~-~~~~~~v~~~~pq-~ 246 (369)
+..+++..|..... ..+.+-+.+..+... +..++++-... . ...+.+.+.+ +. ...++.+.+|.+. .
T Consensus 184 ~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~-~----~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~ 258 (355)
T cd03819 184 GKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDAQ-G----RRFYYAELLELIKRLGLQDRVTFVGHCSDMP 258 (355)
T ss_pred CceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECCc-c----cchHHHHHHHHHHHcCCcceEEEcCCcccHH
Confidence 34666677776542 335555555556543 34444443221 1 1111111111 11 1357888888543 4
Q ss_pred HhhcCCCccceeec--CC-CchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHHH
Q 017557 247 LILKHPSVGCFVTH--CG-SGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAV 323 (369)
Q Consensus 247 ~lL~~~~~~~~ItH--gG-~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~l 323 (369)
.+++.+++-++-++ -| .+++.||+++|+|+|+.-. ......+.+. +.|+.++. -+.+.+.++|..+
T Consensus 259 ~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~----~~~~e~i~~~-~~g~~~~~------~~~~~l~~~i~~~ 327 (355)
T cd03819 259 AAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDH----GGARETVRPG-ETGLLVPP------GDAEALAQALDQI 327 (355)
T ss_pred HHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCC----CCcHHHHhCC-CceEEeCC------CCHHHHHHHHHHH
Confidence 58899998333331 23 3589999999999998653 2345566666 68888865 3788999999766
Q ss_pred hccCCcchHHHHHHHHHHHH
Q 017557 324 MDDDSEVGKDARQNHAELRE 343 (369)
Q Consensus 324 l~~~~~~~~~~~~~a~~l~~ 343 (369)
+....++...++++|++..+
T Consensus 328 ~~~~~~~~~~~~~~a~~~~~ 347 (355)
T cd03819 328 LSLLPEGRAKMFAKARMCVE 347 (355)
T ss_pred HhhCHHHHHHHHHHHHHHHH
Confidence 64213333455555555544
No 68
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.22 E-value=0.00049 Score=65.62 Aligned_cols=59 Identities=19% Similarity=0.156 Sum_probs=52.9
Q ss_pred eeecCCCchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHHHhc
Q 017557 257 FVTHCGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAVMD 325 (369)
Q Consensus 257 ~ItHgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ll~ 325 (369)
|+-+||+| ..|.+++|+|+|.=|+..-|..-++++.+. |+|+.++. .+.+.+++..+++
T Consensus 327 lv~~GGHN-~LEpa~~~~pvi~Gp~~~Nf~ei~~~l~~~-ga~~~v~~--------~~~l~~~v~~l~~ 385 (419)
T COG1519 327 LVPIGGHN-PLEPAAFGTPVIFGPYTFNFSDIAERLLQA-GAGLQVED--------ADLLAKAVELLLA 385 (419)
T ss_pred ccCCCCCC-hhhHHHcCCCEEeCCccccHHHHHHHHHhc-CCeEEECC--------HHHHHHHHHHhcC
Confidence 45688887 889999999999999999999999999999 99999964 4688999988887
No 69
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.21 E-value=0.00069 Score=65.86 Aligned_cols=94 Identities=11% Similarity=-0.004 Sum_probs=65.6
Q ss_pred CCCeeEecccChH---HhhcCCCccceee---cCC-CchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecC
Q 017557 234 GRGFVHGGWVQQQ---LILKHPSVGCFVT---HCG-SGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGD 306 (369)
Q Consensus 234 ~~~~~v~~~~pq~---~lL~~~~~~~~It---HgG-~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~ 306 (369)
..++.+.+++|.. ++++.+++ +|. +-| ..++.||+++|+|+|+.... .....+.+. +.|+.++..
T Consensus 282 ~~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~----~~~e~i~~~-~~g~~~~~~- 353 (405)
T TIGR03449 282 ADRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARVG----GLPVAVADG-ETGLLVDGH- 353 (405)
T ss_pred CceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecCC----CcHhhhccC-CceEECCCC-
Confidence 3579999999864 47899998 663 223 35899999999999986543 344556666 788887653
Q ss_pred CCCccCHHHHHHHHHHHhccCCcchHHHHHHHHHH
Q 017557 307 EDGLFTRDGVCKAVKAVMDDDSEVGKDARQNHAEL 341 (369)
Q Consensus 307 ~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l 341 (369)
+.+++.++|.+++++ .+....+++++++.
T Consensus 354 -----d~~~la~~i~~~l~~-~~~~~~~~~~~~~~ 382 (405)
T TIGR03449 354 -----DPADWADALARLLDD-PRTRIRMGAAAVEH 382 (405)
T ss_pred -----CHHHHHHHHHHHHhC-HHHHHHHHHHHHHH
Confidence 689999999999982 22223445555443
No 70
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.16 E-value=0.0015 Score=61.87 Aligned_cols=111 Identities=11% Similarity=0.067 Sum_probs=70.4
Q ss_pred CCeeEecccC-hH---HhhcCCCccceeecC----CCchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecC
Q 017557 235 RGFVHGGWVQ-QQ---LILKHPSVGCFVTHC----GSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGD 306 (369)
Q Consensus 235 ~~~~v~~~~p-q~---~lL~~~~~~~~ItHg----G~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~ 306 (369)
.++...+|++ +. .+++.+++ +|.-. ..+++.||+++|+|+|+.... .....+.+. +.|+.++.
T Consensus 244 ~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~----~~~e~~~~~-~~g~~~~~-- 314 (365)
T cd03825 244 FPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDVG----GIPDIVDHG-VTGYLAKP-- 314 (365)
T ss_pred CceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecCC----CChhheeCC-CceEEeCC--
Confidence 4788889998 43 47888888 77753 247899999999999986542 233344444 67877765
Q ss_pred CCCccCHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 017557 307 EDGLFTRDGVCKAVKAVMDDDSEVGKDARQNHAELREFLISPGLENSYVDGFVQEL 362 (369)
Q Consensus 307 ~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~v~~l 362 (369)
.+.+++.+++.+++++ ++....+.+++++ ...+.-+.++..+++++..
T Consensus 315 ----~~~~~~~~~l~~l~~~-~~~~~~~~~~~~~---~~~~~~s~~~~~~~~~~~y 362 (365)
T cd03825 315 ----GDPEDLAEGIEWLLAD-PDEREELGEAARE---LAENEFDSRVQAKRYLSLY 362 (365)
T ss_pred ----CCHHHHHHHHHHHHhC-HHHHHHHHHHHHH---HHHHhcCHHHHHHHHHHHH
Confidence 3688999999999982 1112233333333 2333334445555555544
No 71
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.15 E-value=0.00037 Score=65.81 Aligned_cols=79 Identities=19% Similarity=0.192 Sum_probs=58.7
Q ss_pred CCCeeEecccChH---HhhcCCCccceee--c--------CCCchHHHHHHhCCcccccccccchhHHHHHHhhhcceEE
Q 017557 234 GRGFVHGGWVQQQ---LILKHPSVGCFVT--H--------CGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGV 300 (369)
Q Consensus 234 ~~~~~v~~~~pq~---~lL~~~~~~~~It--H--------gG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~ 300 (369)
..|+.+.+++|+. .+++++++ +|. . |.-+++.||+++|+|+|+.+..+ ....+.+. ..|+
T Consensus 235 ~~~v~~~g~~~~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i~~~-~~g~ 307 (355)
T cd03799 235 EDRVTLLGAKSQEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELVEDG-ETGL 307 (355)
T ss_pred CCeEEECCcCChHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhhhCC-CceE
Confidence 4689999999754 47788888 555 2 23468999999999999876432 22344444 5888
Q ss_pred EEeecCCCCccCHHHHHHHHHHHhc
Q 017557 301 EVERGDEDGLFTRDGVCKAVKAVMD 325 (369)
Q Consensus 301 ~l~~~~~~~~~~~~~l~~ai~~ll~ 325 (369)
.+.. -+.+++.++|.++++
T Consensus 308 ~~~~------~~~~~l~~~i~~~~~ 326 (355)
T cd03799 308 LVPP------GDPEALADAIERLLD 326 (355)
T ss_pred EeCC------CCHHHHHHHHHHHHh
Confidence 8865 368999999999998
No 72
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=98.15 E-value=0.00087 Score=65.10 Aligned_cols=81 Identities=23% Similarity=0.224 Sum_probs=60.2
Q ss_pred CCCeeEecccChHH---hhcCCCccceeec-CCC-chHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecCCC
Q 017557 234 GRGFVHGGWVQQQL---ILKHPSVGCFVTH-CGS-GSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDED 308 (369)
Q Consensus 234 ~~~~~v~~~~pq~~---lL~~~~~~~~ItH-gG~-~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~ 308 (369)
..++.+.+++|+.+ +|+.+++-++.+. .|. .++.||+++|+|+|+-. .......+.+- ..|+.++.
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas~----~~g~~e~i~~~-~~G~lv~~---- 350 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSD----TAPVREVITDG-ENGLLVDF---- 350 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEcC----CCCchhhcccC-CceEEcCC----
Confidence 46899999999765 6778888333333 222 47899999999999864 34455666666 67888776
Q ss_pred CccCHHHHHHHHHHHhc
Q 017557 309 GLFTRDGVCKAVKAVMD 325 (369)
Q Consensus 309 ~~~~~~~l~~ai~~ll~ 325 (369)
-+++++.++|.++++
T Consensus 351 --~d~~~la~~i~~ll~ 365 (396)
T cd03818 351 --FDPDALAAAVIELLD 365 (396)
T ss_pred --CCHHHHHHHHHHHHh
Confidence 368999999999998
No 73
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.14 E-value=0.00011 Score=70.04 Aligned_cols=125 Identities=14% Similarity=0.120 Sum_probs=82.7
Q ss_pred EEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhcCCCeeEecccChH---HhhcCCCc
Q 017557 178 IFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGRGFVHGGWVQQQ---LILKHPSV 254 (369)
Q Consensus 178 v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~---~lL~~~~~ 254 (369)
.++..|+... ......+++++...+.+++++-... . .+.+.+ ....|+.+.+++|+. .+++.+++
T Consensus 197 ~il~~G~~~~--~K~~~~li~a~~~~~~~l~ivG~g~-----~----~~~l~~-~~~~~V~~~g~~~~~~~~~~~~~ad~ 264 (351)
T cd03804 197 YYLSVGRLVP--YKRIDLAIEAFNKLGKRLVVIGDGP-----E----LDRLRA-KAGPNVTFLGRVSDEELRDLYARARA 264 (351)
T ss_pred EEEEEEcCcc--ccChHHHHHHHHHCCCcEEEEECCh-----h----HHHHHh-hcCCCEEEecCCCHHHHHHHHHhCCE
Confidence 3455666653 2335667777776667766654322 0 111222 235699999999974 47888998
Q ss_pred cceeecCCC-chHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHHHhc
Q 017557 255 GCFVTHCGS-GSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAVMD 325 (369)
Q Consensus 255 ~~~ItHgG~-~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ll~ 325 (369)
-++-+.-|. .++.||+++|+|+|+....+ ....+++. +.|+.++.. +.+++.++|.++++
T Consensus 265 ~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~~-~~G~~~~~~------~~~~la~~i~~l~~ 325 (351)
T cd03804 265 FLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETVIDG-VTGILFEEQ------TVESLAAAVERFEK 325 (351)
T ss_pred EEECCcCCCCchHHHHHHcCCCEEEeCCCC----CcceeeCC-CCEEEeCCC------CHHHHHHHHHHHHh
Confidence 333344444 46789999999999976433 33456666 789888763 68889999999998
No 74
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.09 E-value=0.00049 Score=65.01 Aligned_cols=127 Identities=15% Similarity=0.079 Sum_probs=75.8
Q ss_pred CCceEEEeeCCCcc----CCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhcCCCeeE-ecccChHHh
Q 017557 174 AKSLIFCALGSECV----LKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGRGFVH-GGWVQQQLI 248 (369)
Q Consensus 174 ~~~~v~vs~GS~~~----~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v-~~~~pq~~l 248 (369)
+.+.|++=+.+..+ .....+.++++.|++.+..+|...+... ...+-++ -++.+ ..-++..++
T Consensus 178 ~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~~-----~~~~~~~-------~~~~i~~~~vd~~~L 245 (335)
T PF04007_consen 178 DEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYED-----QRELFEK-------YGVIIPPEPVDGLDL 245 (335)
T ss_pred CCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEEEecCCcc-----hhhHHhc-------cCccccCCCCCHHHH
Confidence 45677777766433 2234577899999887776555543321 1111111 12332 234555689
Q ss_pred hcCCCccceeecCCCchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHHHhc
Q 017557 249 LKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAVMD 325 (369)
Q Consensus 249 L~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ll~ 325 (369)
|.++++ +|+-|| +...||...|+|.|.+ +.++-...-+++.+. |. +... -+.+++.+.+++.+.
T Consensus 246 l~~a~l--~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~~~-Gl---l~~~-----~~~~ei~~~v~~~~~ 309 (335)
T PF04007_consen 246 LYYADL--VIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLIEK-GL---LYHS-----TDPDEIVEYVRKNLG 309 (335)
T ss_pred HHhcCE--EEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHHHC-CC---eEec-----CCHHHHHHHHHHhhh
Confidence 999999 999777 7788999999999985 222322333556666 65 2222 356677765555443
No 75
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.09 E-value=0.0021 Score=61.87 Aligned_cols=135 Identities=14% Similarity=0.130 Sum_probs=78.2
Q ss_pred eEEEeeCCCccCCHHHHHHHHHHHHh--cCCcEEEEECCCCCCCccccCCchhHHHHhc-----CCCeeE-ecccChH--
Q 017557 177 LIFCALGSECVLKKDQFQELILGFEL--TGLPFFAALKPPTGHDTIESALPEGFEERVK-----GRGFVH-GGWVQQQ-- 246 (369)
Q Consensus 177 ~v~vs~GS~~~~~~~~~~~~~~~l~~--~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~-----~~~~~v-~~~~pq~-- 246 (369)
.+++..|.... ...+..+++++.. .+.+++++.+... ...+-+.+.+... ..++.. .++++..
T Consensus 202 ~~i~~~Grl~~--~Kg~~~li~a~~~l~~~~~l~i~g~g~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 274 (388)
T TIGR02149 202 PYILFVGRITR--QKGVPHLLDAVHYIPKDVQVVLCAGAPD-----TPEVAEEVRQAVALLDRNRTGIIWINKMLPKEEL 274 (388)
T ss_pred eEEEEEccccc--ccCHHHHHHHHHHHhhcCcEEEEeCCCC-----cHHHHHHHHHHHHHhccccCceEEecCCCCHHHH
Confidence 45566677653 2234455555543 3566666544321 1111112222111 123443 4567654
Q ss_pred -HhhcCCCccceeec----CCCchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHH
Q 017557 247 -LILKHPSVGCFVTH----CGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVK 321 (369)
Q Consensus 247 -~lL~~~~~~~~ItH----gG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~ 321 (369)
.+++++++ +|.= +...++.||+++|+|+|+-.. ......+++. +.|+.++..+.+..-..+.+.++|.
T Consensus 275 ~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i~~~-~~G~~~~~~~~~~~~~~~~l~~~i~ 347 (388)
T TIGR02149 275 VELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVVVDG-ETGFLVPPDNSDADGFQAELAKAIN 347 (388)
T ss_pred HHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHhhCC-CceEEcCCCCCcccchHHHHHHHHH
Confidence 47888998 6642 223577999999999998654 3455667776 7899987754111112389999999
Q ss_pred HHhc
Q 017557 322 AVMD 325 (369)
Q Consensus 322 ~ll~ 325 (369)
++++
T Consensus 348 ~l~~ 351 (388)
T TIGR02149 348 ILLA 351 (388)
T ss_pred HHHh
Confidence 9998
No 76
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.08 E-value=0.0014 Score=61.60 Aligned_cols=77 Identities=17% Similarity=0.197 Sum_probs=55.4
Q ss_pred CCCeeEecccChHH---hhcCCCccceeecC---C-CchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecC
Q 017557 234 GRGFVHGGWVQQQL---ILKHPSVGCFVTHC---G-SGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGD 306 (369)
Q Consensus 234 ~~~~~v~~~~pq~~---lL~~~~~~~~ItHg---G-~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~ 306 (369)
..++.+.+|+++.+ +++.+++ +|.-. | .+++.||+++|+|+|+-+..+ ....+. . +.|.....
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~----~~~~~~-~-~~~~~~~~-- 330 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTDKVP----WQELIE-Y-GCGWVVDD-- 330 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCCCC----HHHHhh-c-CceEEeCC--
Confidence 46899999999544 6888888 55432 2 468999999999999976432 333333 3 67776653
Q ss_pred CCCccCHHHHHHHHHHHhc
Q 017557 307 EDGLFTRDGVCKAVKAVMD 325 (369)
Q Consensus 307 ~~~~~~~~~l~~ai~~ll~ 325 (369)
+.+++.++|.++++
T Consensus 331 -----~~~~~~~~i~~l~~ 344 (375)
T cd03821 331 -----DVDALAAALRRALE 344 (375)
T ss_pred -----ChHHHHHHHHHHHh
Confidence 34899999999998
No 77
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=98.03 E-value=0.00049 Score=65.99 Aligned_cols=99 Identities=12% Similarity=0.117 Sum_probs=67.5
Q ss_pred CCCeeEecccChH-HhhcCCCccceeecC--CCchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecCCCCc
Q 017557 234 GRGFVHGGWVQQQ-LILKHPSVGCFVTHC--GSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGL 310 (369)
Q Consensus 234 ~~~~~v~~~~pq~-~lL~~~~~~~~ItHg--G~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~ 310 (369)
..++.+.++.++. .+++.+++-++.++. ...++.||+++|+|+|+..... .....+.+. ..|..++.
T Consensus 260 ~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~~-~~G~lv~~------ 329 (372)
T cd04949 260 EDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIEDG-ENGYLVPK------ 329 (372)
T ss_pred cceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHcccC-CCceEeCC------
Confidence 3467777776654 589999995555553 3468999999999999864321 234556666 78888876
Q ss_pred cCHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Q 017557 311 FTRDGVCKAVKAVMDDDSEVGKDARQNHAELRE 343 (369)
Q Consensus 311 ~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~ 343 (369)
-+.+++.++|.+++.+ .+.-..+.+++.+.++
T Consensus 330 ~d~~~la~~i~~ll~~-~~~~~~~~~~a~~~~~ 361 (372)
T cd04949 330 GDIEALAEAIIELLND-PKLLQKFSEAAYENAE 361 (372)
T ss_pred CcHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHH
Confidence 3689999999999983 2223345555554433
No 78
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=98.02 E-value=0.0029 Score=60.12 Aligned_cols=109 Identities=11% Similarity=0.186 Sum_probs=79.3
Q ss_pred CCeeEecccChHHh---hcCCCccceeecC-------CC------chHHHHHHhCCcccccccccchhHHHHHHhhhcce
Q 017557 235 RGFVHGGWVQQQLI---LKHPSVGCFVTHC-------GS------GSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKV 298 (369)
Q Consensus 235 ~~~~v~~~~pq~~l---L~~~~~~~~ItHg-------G~------~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~ 298 (369)
+|+...+|+|+.++ |+. +++++...- .+ +-+.+.+++|+|+|+.+ +...+..+++. ++
T Consensus 207 ~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~----~~~~~~~V~~~-~~ 280 (333)
T PRK09814 207 ANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWS----KAAIADFIVEN-GL 280 (333)
T ss_pred CCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECC----CccHHHHHHhC-Cc
Confidence 58999999998765 444 443333221 11 12677899999999864 56778899999 99
Q ss_pred EEEEeecCCCCccCHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 017557 299 GVEVERGDEDGLFTRDGVCKAVKAVMDDDSEVGKDARQNHAELREFLISPGLENSYVDGFVQ 360 (369)
Q Consensus 299 G~~l~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~v~ 360 (369)
|+.++ +.+++.+++.++.. ++-..|++|++++++.++.+.-..+++.+.+.
T Consensus 281 G~~v~--------~~~el~~~l~~~~~---~~~~~m~~n~~~~~~~~~~g~~~~~~~~~~~~ 331 (333)
T PRK09814 281 GFVVD--------SLEELPEIIDNITE---EEYQEMVENVKKISKLLRNGYFTKKALVDAIK 331 (333)
T ss_pred eEEeC--------CHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHhcchhHHHHHHHHHh
Confidence 99986 23578888887542 33567999999999999977666777776654
No 79
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.01 E-value=0.0025 Score=59.68 Aligned_cols=107 Identities=20% Similarity=0.156 Sum_probs=66.6
Q ss_pred CCeeEecccCh-HHhhcCCCccceeecCC----CchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecCCCC
Q 017557 235 RGFVHGGWVQQ-QLILKHPSVGCFVTHCG----SGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDG 309 (369)
Q Consensus 235 ~~~~v~~~~pq-~~lL~~~~~~~~ItHgG----~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~ 309 (369)
.++.+.+.... ..+++.+++ +|..+. .+++.||+++|+|+|+-.. ..+...+.+ .|..+..
T Consensus 251 ~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~----~~~~e~~~~---~g~~~~~----- 316 (365)
T cd03807 251 DKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVATDV----GDNAELVGD---TGFLVPP----- 316 (365)
T ss_pred ceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEcCC----CChHHHhhc---CCEEeCC-----
Confidence 46666555443 468899998 776544 3799999999999998543 334444544 3455544
Q ss_pred ccCHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 017557 310 LFTRDGVCKAVKAVMDDDSEVGKDARQNHAELREFLISPGLENSYVDGFVQ 360 (369)
Q Consensus 310 ~~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~v~ 360 (369)
-+.+++.++|.+++++ .+.+++..+...+.+++.-+-.+.++.+.+
T Consensus 317 -~~~~~l~~~i~~l~~~----~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 362 (365)
T cd03807 317 -GDPEALAEAIEALLAD----PALRQALGEAARERIEENFSIEAMVEAYEE 362 (365)
T ss_pred -CCHHHHHHHHHHHHhC----hHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3688999999999983 223333334444444444444444554444
No 80
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.00 E-value=0.0033 Score=62.10 Aligned_cols=79 Identities=11% Similarity=0.085 Sum_probs=57.6
Q ss_pred CCCeeEecccChHH---hhcCC----CccceeecC---C-CchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEE
Q 017557 234 GRGFVHGGWVQQQL---ILKHP----SVGCFVTHC---G-SGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEV 302 (369)
Q Consensus 234 ~~~~~v~~~~pq~~---lL~~~----~~~~~ItHg---G-~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l 302 (369)
..++.+.+++++.+ +++.+ ++ ||.-. | -.++.||+++|+|+|+-... .+...+.+. ..|+.+
T Consensus 316 ~~~V~f~g~~~~~~~~~~~~~a~~~~Dv--~v~pS~~E~fg~~~lEAma~G~PvV~s~~g----g~~eiv~~~-~~G~lv 388 (439)
T TIGR02472 316 YGKVAYPKHHRPDDVPELYRLAARSRGI--FVNPALTEPFGLTLLEAAACGLPIVATDDG----GPRDIIANC-RNGLLV 388 (439)
T ss_pred CceEEecCCCCHHHHHHHHHHHhhcCCE--EecccccCCcccHHHHHHHhCCCEEEeCCC----CcHHHhcCC-CcEEEe
Confidence 35677778877655 46544 55 87643 3 35899999999999987543 344555555 678888
Q ss_pred eecCCCCccCHHHHHHHHHHHhc
Q 017557 303 ERGDEDGLFTRDGVCKAVKAVMD 325 (369)
Q Consensus 303 ~~~~~~~~~~~~~l~~ai~~ll~ 325 (369)
+.. +.+++.++|.++++
T Consensus 389 ~~~------d~~~la~~i~~ll~ 405 (439)
T TIGR02472 389 DVL------DLEAIASALEDALS 405 (439)
T ss_pred CCC------CHHHHHHHHHHHHh
Confidence 764 68899999999998
No 81
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=97.99 E-value=0.00035 Score=67.24 Aligned_cols=131 Identities=15% Similarity=0.119 Sum_probs=80.4
Q ss_pred CceEEEeeCCCc--c-CCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhc-CCCeeEecccCh---HH
Q 017557 175 KSLIFCALGSEC--V-LKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVK-GRGFVHGGWVQQ---QL 247 (369)
Q Consensus 175 ~~~v~vs~GS~~--~-~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~-~~~~~v~~~~pq---~~ 247 (369)
++.|+|++=... . ...+.+.++++++...+.++++...... + ....+-+.+.+... .+|+.+.+-++. ..
T Consensus 201 ~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~-p--~~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~ 277 (365)
T TIGR03568 201 KPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNAD-A--GSRIINEAIEEYVNEHPNFRLFKSLGQERYLS 277 (365)
T ss_pred CCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCC-C--CchHHHHHHHHHhcCCCCEEEECCCChHHHHH
Confidence 458888885443 2 3457799999999877766666542210 0 00111112222222 467888876554 45
Q ss_pred hhcCCCccceeecCCCchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHHHhc
Q 017557 248 ILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAVMD 325 (369)
Q Consensus 248 lL~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ll~ 325 (369)
+++++++ +||.++.+- .||.+.|+|+|.+- +-+ ...+. |..+.+- + .++++|.++++++++
T Consensus 278 Ll~~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~R~----e~~~~-g~nvl~v-g-----~~~~~I~~a~~~~~~ 338 (365)
T TIGR03568 278 LLKNADA--VIGNSSSGI-IEAPSFGVPTINIG---TRQ----KGRLR-ADSVIDV-D-----PDKEEIVKAIEKLLD 338 (365)
T ss_pred HHHhCCE--EEEcChhHH-HhhhhcCCCEEeec---CCc----hhhhh-cCeEEEe-C-----CCHHHHHHHHHHHhC
Confidence 8889999 999885544 99999999999773 211 11133 4333322 2 578999999999654
No 82
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=97.98 E-value=7.1e-05 Score=67.27 Aligned_cols=149 Identities=14% Similarity=0.127 Sum_probs=110.5
Q ss_pred CceEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHh-cCCCeeEecccC-hHHhhcCC
Q 017557 175 KSLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERV-KGRGFVHGGWVQ-QQLILKHP 252 (369)
Q Consensus 175 ~~~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~-~~~~~~v~~~~p-q~~lL~~~ 252 (369)
..-|+|++|..- +....-+++..|.+.++.+-+++++.. ..+ ++...+. ..+|+....... ...++..+
T Consensus 158 ~r~ilI~lGGsD--pk~lt~kvl~~L~~~~~nl~iV~gs~~------p~l-~~l~k~~~~~~~i~~~~~~~dma~LMke~ 228 (318)
T COG3980 158 KRDILITLGGSD--PKNLTLKVLAELEQKNVNLHIVVGSSN------PTL-KNLRKRAEKYPNINLYIDTNDMAELMKEA 228 (318)
T ss_pred hheEEEEccCCC--hhhhHHHHHHHhhccCeeEEEEecCCC------cch-hHHHHHHhhCCCeeeEecchhHHHHHHhc
Confidence 447999998764 455677788888877777777777431 112 2222222 245666655554 45699999
Q ss_pred CccceeecCCCchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHHHhccCCcchH
Q 017557 253 SVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAVMDDDSEVGK 332 (369)
Q Consensus 253 ~~~~~ItHgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~ 332 (369)
++ .|+-+|. |+.|++.-|+|.+++|+...|.--|+..+.. |+-..+.-. ++...+...+.++++ +.
T Consensus 229 d~--aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~l-g~~~~l~~~-----l~~~~~~~~~~~i~~-----d~ 294 (318)
T COG3980 229 DL--AISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEFEAL-GIIKQLGYH-----LKDLAKDYEILQIQK-----DY 294 (318)
T ss_pred ch--heeccch-HHHHHHHhcCCceEEeeeccHHHHHHHHHhc-CchhhccCC-----CchHHHHHHHHHhhh-----CH
Confidence 99 9998875 8999999999999999999999999999999 888777654 677888888888988 67
Q ss_pred HHHHHHHHHHHHHh
Q 017557 333 DARQNHAELREFLI 346 (369)
Q Consensus 333 ~~~~~a~~l~~~~~ 346 (369)
..|++.-.-++.+-
T Consensus 295 ~~rk~l~~~~~~i~ 308 (318)
T COG3980 295 ARRKNLSFGSKLIG 308 (318)
T ss_pred HHhhhhhhccceee
Confidence 77777665555443
No 83
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=97.92 E-value=0.0036 Score=60.79 Aligned_cols=78 Identities=22% Similarity=0.193 Sum_probs=57.7
Q ss_pred cCCCeeEecccChH-HhhcCCCcccee--ec--CCC-chHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecC
Q 017557 233 KGRGFVHGGWVQQQ-LILKHPSVGCFV--TH--CGS-GSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGD 306 (369)
Q Consensus 233 ~~~~~~v~~~~pq~-~lL~~~~~~~~I--tH--gG~-~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~ 306 (369)
...|+.+.+++++. .+++++++ +| ++ .|. +.+.||+++|+|+|+-+...+.. .+.. |.|+.+. .
T Consensus 278 ~~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~~~~-~~g~lv~-~- 347 (397)
T TIGR03087 278 ALPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----DALP-GAELLVA-A- 347 (397)
T ss_pred cCCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCcccccc-----cccC-CcceEeC-C-
Confidence 35689999999864 48899999 65 43 344 46999999999999987543221 1234 6777764 2
Q ss_pred CCCccCHHHHHHHHHHHhc
Q 017557 307 EDGLFTRDGVCKAVKAVMD 325 (369)
Q Consensus 307 ~~~~~~~~~l~~ai~~ll~ 325 (369)
+.+++.++|.++++
T Consensus 348 -----~~~~la~ai~~ll~ 361 (397)
T TIGR03087 348 -----DPADFAAAILALLA 361 (397)
T ss_pred -----CHHHHHHHHHHHHc
Confidence 68999999999998
No 84
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=97.92 E-value=0.0025 Score=61.94 Aligned_cols=77 Identities=10% Similarity=0.052 Sum_probs=53.2
Q ss_pred CCCeeEecccChH---HhhcCCCccceeec---CCC-chHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecC
Q 017557 234 GRGFVHGGWVQQQ---LILKHPSVGCFVTH---CGS-GSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGD 306 (369)
Q Consensus 234 ~~~~~v~~~~pq~---~lL~~~~~~~~ItH---gG~-~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~ 306 (369)
..++.+.+|+|+. .+++.+++ +|.- -|. .++.||+++|+|+|+-+..+ ....+. . |.+... .
T Consensus 249 ~~~v~~~G~~~~~~~~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i~-~-~~~~~~-~-- 317 (398)
T cd03796 249 QDRVELLGAVPHERVRDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVLP-P-DMILLA-E-- 317 (398)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhhee-C-Cceeec-C--
Confidence 3568888999864 47888888 6542 243 39999999999999977643 222333 3 434332 2
Q ss_pred CCCccCHHHHHHHHHHHhc
Q 017557 307 EDGLFTRDGVCKAVKAVMD 325 (369)
Q Consensus 307 ~~~~~~~~~l~~ai~~ll~ 325 (369)
.+.+++.+++.+++.
T Consensus 318 ----~~~~~l~~~l~~~l~ 332 (398)
T cd03796 318 ----PDVESIVRKLEEAIS 332 (398)
T ss_pred ----CCHHHHHHHHHHHHh
Confidence 367899999999987
No 85
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.90 E-value=0.00071 Score=65.46 Aligned_cols=114 Identities=13% Similarity=0.125 Sum_probs=75.0
Q ss_pred CCCeeEecccChH---HhhcCCCccceeecC----CC-chHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeec
Q 017557 234 GRGFVHGGWVQQQ---LILKHPSVGCFVTHC----GS-GSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERG 305 (369)
Q Consensus 234 ~~~~~v~~~~pq~---~lL~~~~~~~~ItHg----G~-~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~ 305 (369)
+.++.+.+++|+. .+++.+++ +|.-. |. .++.||+++|+|+|+.... .+...+++. ..|..+...
T Consensus 256 ~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~g----g~~Eiv~~~-~~G~~l~~~ 328 (380)
T PRK15484 256 GDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKG----GITEFVLEG-ITGYHLAEP 328 (380)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCC----CcHhhcccC-CceEEEeCC
Confidence 3578888999864 46888998 66533 32 5778999999999997652 344556666 678765433
Q ss_pred CCCCccCHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 017557 306 DEDGLFTRDGVCKAVKAVMDDDSEVGKDARQNHAELREFLISPGLENSYVDGFVQELHS 364 (369)
Q Consensus 306 ~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~v~~l~~ 364 (369)
.+.+++.++|.++++ ++..++-.++-.+.+.+.-+-.+.++++.+.+.+
T Consensus 329 -----~d~~~la~~I~~ll~-----d~~~~~~~~~ar~~~~~~fsw~~~a~~~~~~l~~ 377 (380)
T PRK15484 329 -----MTSDSIISDINRTLA-----DPELTQIAEQAKDFVFSKYSWEGVTQRFEEQIHN 377 (380)
T ss_pred -----CCHHHHHHHHHHHHc-----CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 478999999999998 4444333333333333344445555666665543
No 86
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.90 E-value=0.0026 Score=66.00 Aligned_cols=112 Identities=16% Similarity=0.147 Sum_probs=73.7
Q ss_pred CCCeeEecccCh-HHhhcCCCccceee---cCCC-chHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecCCC
Q 017557 234 GRGFVHGGWVQQ-QLILKHPSVGCFVT---HCGS-GSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDED 308 (369)
Q Consensus 234 ~~~~~v~~~~pq-~~lL~~~~~~~~It---HgG~-~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~ 308 (369)
.++|.+.+|.+. ..+|+.+++ ||. +.|. +++.||+++|+|+|+.... .....+.+- ..|+.++.++
T Consensus 573 ~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV~dg-~~GlLv~~~d-- 643 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAVQEG-VTGLTLPADT-- 643 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHccCC-CCEEEeCCCC--
Confidence 467888888875 448888888 664 4454 6889999999999997642 345566666 6899998765
Q ss_pred CccCHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 017557 309 GLFTRDGVCKAVKAVMDDDSEVGKDARQNHAELREFLISPGLENSYVDGFVQ 360 (369)
Q Consensus 309 ~~~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~v~ 360 (369)
.+.+++.+++.+++.+ ...++.+++++++.. .+.-+-...++.+++
T Consensus 644 --~~~~~La~aL~~ll~~-l~~~~~l~~~ar~~a---~~~FS~~~~~~~~~~ 689 (694)
T PRK15179 644 --VTAPDVAEALARIHDM-CAADPGIARKAADWA---SARFSLNQMIASTVR 689 (694)
T ss_pred --CChHHHHHHHHHHHhC-hhccHHHHHHHHHHH---HHhCCHHHHHHHHHH
Confidence 6667777777766642 122567777665543 223333444454444
No 87
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.88 E-value=0.00025 Score=60.15 Aligned_cols=88 Identities=19% Similarity=0.289 Sum_probs=65.9
Q ss_pred CCCeeEecccCh---HHhhcCCCccceeec----CCCchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecC
Q 017557 234 GRGFVHGGWVQQ---QLILKHPSVGCFVTH----CGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGD 306 (369)
Q Consensus 234 ~~~~~v~~~~pq---~~lL~~~~~~~~ItH----gG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~ 306 (369)
..++.+.++.++ ..+++.+++ +|+. +..+++.||+++|+|+|+. +...+...+.+. +.|+.++.
T Consensus 72 ~~~i~~~~~~~~~~l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~----~~~~~~e~~~~~-~~g~~~~~-- 142 (172)
T PF00534_consen 72 KENIIFLGYVPDDELDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIAS----DIGGNNEIINDG-VNGFLFDP-- 142 (172)
T ss_dssp GTTEEEEESHSHHHHHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEE----SSTHHHHHSGTT-TSEEEEST--
T ss_pred ccccccccccccccccccccccee--ccccccccccccccccccccccceeec----cccCCceeeccc-cceEEeCC--
Confidence 458888899882 458888888 7766 5567999999999999974 456667777777 88998876
Q ss_pred CCCccCHHHHHHHHHHHhccCCcchHHHHHHHH
Q 017557 307 EDGLFTRDGVCKAVKAVMDDDSEVGKDARQNHA 339 (369)
Q Consensus 307 ~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~a~ 339 (369)
-+.+++.++|.+++. ++.+++++.
T Consensus 143 ----~~~~~l~~~i~~~l~-----~~~~~~~l~ 166 (172)
T PF00534_consen 143 ----NDIEELADAIEKLLN-----DPELRQKLG 166 (172)
T ss_dssp ----TSHHHHHHHHHHHHH-----HHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHC-----CHHHHHHHH
Confidence 479999999999998 554444443
No 88
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=97.86 E-value=0.0009 Score=63.27 Aligned_cols=129 Identities=16% Similarity=0.131 Sum_probs=80.3
Q ss_pred CceEEEeeCCCcc-CCHHHHHHHHHHHHhc-CCcEEEEECCCCCCCccccCCchhHHH---HhcCCCeeEecccChHH--
Q 017557 175 KSLIFCALGSECV-LKKDQFQELILGFELT-GLPFFAALKPPTGHDTIESALPEGFEE---RVKGRGFVHGGWVQQQL-- 247 (369)
Q Consensus 175 ~~~v~vs~GS~~~-~~~~~~~~~~~~l~~~-~~~~i~~~~~~~~~~~~~~~lp~~~~~---~~~~~~~~v~~~~pq~~-- 247 (369)
++.+++..|+... ...+.+.+.+..+... +.++++. |.+. ..+.+.+ .....|+.+.+++++.+
T Consensus 219 ~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~i~-G~~~--------~~~~~~~~~~~~~~~~v~~~g~~~~~~~~ 289 (394)
T cd03794 219 DKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFLIV-GDGP--------EKEELKELAKALGLDNVTFLGRVPKEELP 289 (394)
T ss_pred CcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEEEe-CCcc--------cHHHHHHHHHHcCCCcEEEeCCCChHHHH
Confidence 4467777787654 2234444444444333 4555444 3321 1112222 22346899999998654
Q ss_pred -hhcCCCccceeecCC---------CchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecCCCCccCHHHHH
Q 017557 248 -ILKHPSVGCFVTHCG---------SGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVC 317 (369)
Q Consensus 248 -lL~~~~~~~~ItHgG---------~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~ 317 (369)
+++.+++ +|.... -+++.||+++|+|+|+.+..+.+. .+.+. +.|..++.. +.+++.
T Consensus 290 ~~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~----~~~~~-~~g~~~~~~------~~~~l~ 356 (394)
T cd03794 290 ELLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAE----LVEEA-GAGLVVPPG------DPEALA 356 (394)
T ss_pred HHHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchh----hhccC-CcceEeCCC------CHHHHH
Confidence 7888888 654322 234799999999999988765433 33444 677777653 689999
Q ss_pred HHHHHHhc
Q 017557 318 KAVKAVMD 325 (369)
Q Consensus 318 ~ai~~ll~ 325 (369)
++|.+++.
T Consensus 357 ~~i~~~~~ 364 (394)
T cd03794 357 AAILELLD 364 (394)
T ss_pred HHHHHHHh
Confidence 99999997
No 89
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=97.77 E-value=0.0086 Score=58.66 Aligned_cols=93 Identities=10% Similarity=0.129 Sum_probs=62.3
Q ss_pred CCeeEe-cccChHH---hhcCCCccceee-c---CC---CchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEe
Q 017557 235 RGFVHG-GWVQQQL---ILKHPSVGCFVT-H---CG---SGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVE 303 (369)
Q Consensus 235 ~~~~v~-~~~pq~~---lL~~~~~~~~It-H---gG---~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~ 303 (369)
.++++. +|+|..+ +|+.+++ ++. + -| -+++.||+++|+|+|+... ......+++. +.|+.+.
T Consensus 294 ~~~~~~~g~~~~~~~~~~l~~aDv--~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~----~~~~eiv~~~-~~G~lv~ 366 (415)
T cd03816 294 KKVTIRTPWLSAEDYPKLLASADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCALDF----KCIDELVKHG-ENGLVFG 366 (415)
T ss_pred CcEEEEcCcCCHHHHHHHHHhCCE--EEEccccccccCCcHHHHHHHHcCCCEEEeCC----CCHHHHhcCC-CCEEEEC
Confidence 355544 5887554 6888998 663 1 12 3469999999999998543 3455677777 8898872
Q ss_pred ecCCCCccCHHHHHHHHHHHhccC--CcchHHHHHHHHHHH
Q 017557 304 RGDEDGLFTRDGVCKAVKAVMDDD--SEVGKDARQNHAELR 342 (369)
Q Consensus 304 ~~~~~~~~~~~~l~~ai~~ll~~~--~~~~~~~~~~a~~l~ 342 (369)
+.+++.++|.+++++. +++...+.+++++..
T Consensus 367 --------d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 367 --------DSEELAEQLIDLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred --------CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 4789999999999820 122344555555444
No 90
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=97.77 E-value=0.0091 Score=63.93 Aligned_cols=81 Identities=16% Similarity=0.126 Sum_probs=56.7
Q ss_pred CCCeeEecccChHH---hhcCCC--ccceeec---CC-CchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEee
Q 017557 234 GRGFVHGGWVQQQL---ILKHPS--VGCFVTH---CG-SGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVER 304 (369)
Q Consensus 234 ~~~~~v~~~~pq~~---lL~~~~--~~~~ItH---gG-~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~ 304 (369)
..+|.+.+++++.+ ++..++ .++||.- =| ..++.||+++|+|+|+-...+ ....++.- ..|+.++.
T Consensus 547 ~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII~~g-~nGlLVdP 621 (1050)
T TIGR02468 547 YGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIHRVL-DNGLLVDP 621 (1050)
T ss_pred CCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHhccC-CcEEEECC
Confidence 45677888887754 555552 1227764 23 358899999999999986432 23344455 67888876
Q ss_pred cCCCCccCHHHHHHHHHHHhc
Q 017557 305 GDEDGLFTRDGVCKAVKAVMD 325 (369)
Q Consensus 305 ~~~~~~~~~~~l~~ai~~ll~ 325 (369)
-+.+.|.++|.++++
T Consensus 622 ------~D~eaLA~AL~~LL~ 636 (1050)
T TIGR02468 622 ------HDQQAIADALLKLVA 636 (1050)
T ss_pred ------CCHHHHHHHHHHHhh
Confidence 368899999999998
No 91
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=0.00065 Score=54.32 Aligned_cols=111 Identities=18% Similarity=0.232 Sum_probs=74.2
Q ss_pred EEEeeCCCccCCHHHHH--HHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhcCCCeeEeccc--Ch-HHhhcCC
Q 017557 178 IFCALGSECVLKKDQFQ--ELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGRGFVHGGWV--QQ-QLILKHP 252 (369)
Q Consensus 178 v~vs~GS~~~~~~~~~~--~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~--pq-~~lL~~~ 252 (369)
++|+-||....-...+. ++.+-.+....++|+++|.+ ...|- .+..+.+|. +- +.+...+
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~-------d~kpv--------agl~v~~F~~~~kiQsli~da 66 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNG-------DIKPV--------AGLRVYGFDKEEKIQSLIHDA 66 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCC-------Ccccc--------cccEEEeechHHHHHHHhhcc
Confidence 68899998531111111 23332333456789999874 12221 134455553 43 4466777
Q ss_pred CccceeecCCCchHHHHHHhCCcccccccc--------cchhHHHHHHhhhcceEEEEeecC
Q 017557 253 SVGCFVTHCGSGSLSEAMVNECQLVLLPNV--------GDQIINSRLMGEDLKVGVEVERGD 306 (369)
Q Consensus 253 ~~~~~ItHgG~~s~~Eal~~GvP~i~~P~~--------~DQ~~na~~v~~~~g~G~~l~~~~ 306 (369)
++ +|+|+|.||+..++..++|.|++|-. .+|-.-|..+.+. +.=+.....+
T Consensus 67 rI--VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae~-~~vv~~spte 125 (161)
T COG5017 67 RI--VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAEI-NYVVACSPTE 125 (161)
T ss_pred eE--EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHhc-CceEEEcCCc
Confidence 87 99999999999999999999999963 3688889999888 7776666543
No 92
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=97.70 E-value=0.00096 Score=65.20 Aligned_cols=113 Identities=17% Similarity=0.104 Sum_probs=74.4
Q ss_pred CCCeeEecccChHH---hhcCCCccceee--c-------CCC-chHHHHHHhCCcccccccccchhHHHHHHhhhcceEE
Q 017557 234 GRGFVHGGWVQQQL---ILKHPSVGCFVT--H-------CGS-GSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGV 300 (369)
Q Consensus 234 ~~~~~v~~~~pq~~---lL~~~~~~~~It--H-------gG~-~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~ 300 (369)
.+++.+.+|+|+.+ +++.+++ ||. + -|. ++++||+++|+|+|+-... .....+++- ..|+
T Consensus 278 ~~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~----g~~E~v~~~-~~G~ 350 (406)
T PRK15427 278 EDVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHS----GIPELVEAD-KSGW 350 (406)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCC----CchhhhcCC-CceE
Confidence 45799999999754 7888888 664 2 244 5689999999999987543 244556665 6888
Q ss_pred EEeecCCCCccCHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 017557 301 EVERGDEDGLFTRDGVCKAVKAVMD-DDSEVGKDARQNHAELREFLISPGLENSYVDGFVQELH 363 (369)
Q Consensus 301 ~l~~~~~~~~~~~~~l~~ai~~ll~-~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~v~~l~ 363 (369)
.++.. +.+++.++|.++++ + .+....+.+++++ .+.+.-+.+...+++.+.+.
T Consensus 351 lv~~~------d~~~la~ai~~l~~~d-~~~~~~~~~~ar~---~v~~~f~~~~~~~~l~~~~~ 404 (406)
T PRK15427 351 LVPEN------DAQALAQRLAAFSQLD-TDELAPVVKRARE---KVETDFNQQVINRELASLLQ 404 (406)
T ss_pred EeCCC------CHHHHHHHHHHHHhCC-HHHHHHHHHHHHH---HHHHhcCHHHHHHHHHHHHh
Confidence 88763 68999999999987 3 2222334444443 33333344555555555543
No 93
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=97.66 E-value=0.026 Score=54.20 Aligned_cols=110 Identities=10% Similarity=0.093 Sum_probs=66.9
Q ss_pred CCCeeEeccc--ChH---HhhcCCCccceeecC---C-CchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEee
Q 017557 234 GRGFVHGGWV--QQQ---LILKHPSVGCFVTHC---G-SGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVER 304 (369)
Q Consensus 234 ~~~~~v~~~~--pq~---~lL~~~~~~~~ItHg---G-~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~ 304 (369)
..++.+.++. +.. .+++.+++ |+.-+ | ..++.||+++|+|+|+-...+ ....+.+- ..|+.++
T Consensus 251 ~~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~----~~~~i~~~-~~g~~~~- 322 (372)
T cd03792 251 DPDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVGG----IPLQIEDG-ETGFLVD- 322 (372)
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCCC----chhhcccC-CceEEeC-
Confidence 3467777776 332 47888888 77543 2 348999999999999876432 23445555 6777654
Q ss_pred cCCCCccCHHHHHHHHHHHhccCCcchHHHHHHHHHHHHH-HhcCCCCHHHHHHHHHHHH
Q 017557 305 GDEDGLFTRDGVCKAVKAVMDDDSEVGKDARQNHAELREF-LISPGLENSYVDGFVQELH 363 (369)
Q Consensus 305 ~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~-~~~~~~~~~~~~~~v~~l~ 363 (369)
+.+.+..+|.++++ ++..++...+-+.. +.+.-+-...+.++++.+.
T Consensus 323 -------~~~~~a~~i~~ll~-----~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~ 370 (372)
T cd03792 323 -------TVEEAAVRILYLLR-----DPELRRKMGANAREHVRENFLITRHLKDYLYLIS 370 (372)
T ss_pred -------CcHHHHHHHHHHHc-----CHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 23567789999997 44444443333222 2333344555566655543
No 94
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.65 E-value=0.00097 Score=65.17 Aligned_cols=82 Identities=15% Similarity=0.145 Sum_probs=60.0
Q ss_pred CCCeeEecccChHH---hhcCCCccceeecCC----CchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecC
Q 017557 234 GRGFVHGGWVQQQL---ILKHPSVGCFVTHCG----SGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGD 306 (369)
Q Consensus 234 ~~~~~v~~~~pq~~---lL~~~~~~~~ItHgG----~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~ 306 (369)
..++...+|+++.+ ++..+++.+||...- -++++||+++|+|+|+-.. ......+.+. +.|+.+...
T Consensus 288 ~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~v----gg~~e~i~~~-~~G~l~~~~- 361 (407)
T cd04946 288 NISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNV----GGTPEIVDNG-GNGLLLSKD- 361 (407)
T ss_pred CceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCC----CCcHHHhcCC-CcEEEeCCC-
Confidence 35788899999764 454444444776543 4579999999999998543 3345566665 689888764
Q ss_pred CCCccCHHHHHHHHHHHhc
Q 017557 307 EDGLFTRDGVCKAVKAVMD 325 (369)
Q Consensus 307 ~~~~~~~~~l~~ai~~ll~ 325 (369)
-+.+++.++|.++++
T Consensus 362 ----~~~~~la~~I~~ll~ 376 (407)
T cd04946 362 ----PTPNELVSSLSKFID 376 (407)
T ss_pred ----CCHHHHHHHHHHHHh
Confidence 378999999999997
No 95
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=97.61 E-value=0.02 Score=57.50 Aligned_cols=117 Identities=12% Similarity=0.086 Sum_probs=75.4
Q ss_pred CCCeeEecccChHHhhcCCCccceee---cCC-CchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecC-CC
Q 017557 234 GRGFVHGGWVQQQLILKHPSVGCFVT---HCG-SGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGD-ED 308 (369)
Q Consensus 234 ~~~~~v~~~~pq~~lL~~~~~~~~It---HgG-~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~-~~ 308 (369)
..++...++.+...+++.+++ ||. .=| ..+++||+++|+|+|+.-.. ..+...+++- ..|+.++..+ .+
T Consensus 375 ~~~V~f~G~~~~~~~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~---~G~~eiI~~g-~nG~lv~~~~~~~ 448 (500)
T TIGR02918 375 QDYIHLKGHRNLSEVYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVN---YGNPTFIEDN-KNGYLIPIDEEED 448 (500)
T ss_pred CCeEEEcCCCCHHHHHHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCC---CCCHHHccCC-CCEEEEeCCcccc
Confidence 456888888888889999998 664 233 35899999999999996532 1234455555 6788887321 00
Q ss_pred CccC-HHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 017557 309 GLFT-RDGVCKAVKAVMDDDSEVGKDARQNHAELREFLISPGLENSYVDGFVQEL 362 (369)
Q Consensus 309 ~~~~-~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~v~~l 362 (369)
..-+ .+.++++|.++++ ++.-..+.+++.+.++. -+....++.|.+.+
T Consensus 449 d~~~~~~~la~~I~~ll~--~~~~~~~~~~a~~~a~~----fs~~~v~~~w~~ll 497 (500)
T TIGR02918 449 DEDQIITALAEKIVEYFN--SNDIDAFHEYSYQIAEG----FLTANIIEKWKKLV 497 (500)
T ss_pred chhHHHHHHHHHHHHHhC--hHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHH
Confidence 0012 7889999999996 33344566666654443 33445555555544
No 96
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=97.59 E-value=0.0028 Score=59.72 Aligned_cols=96 Identities=11% Similarity=0.113 Sum_probs=62.2
Q ss_pred cCCCeeEecccChH---HhhcCCCccceeec--CCCchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecCC
Q 017557 233 KGRGFVHGGWVQQQ---LILKHPSVGCFVTH--CGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDE 307 (369)
Q Consensus 233 ~~~~~~v~~~~pq~---~lL~~~~~~~~ItH--gG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~ 307 (369)
...++.+.+++|+. .+++.+++-++-+. |..+++.||+++|+|+|+-...+ ....+. ..|..+..
T Consensus 251 ~~~~v~~~g~~~~~~~~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~~---~~~~~~~~--- 320 (365)
T cd03809 251 LGDRVRFLGYVSDEELAALYRGARAFVFPSLYEGFGLPVLEAMACGTPVIASNISS----LPEVAG---DAALYFDP--- 320 (365)
T ss_pred CCCeEEECCCCChhHHHHHHhhhhhhcccchhccCCCCHHHHhcCCCcEEecCCCC----ccceec---CceeeeCC---
Confidence 35689999999875 47888888322222 23468999999999999865421 112222 23445544
Q ss_pred CCccCHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHh
Q 017557 308 DGLFTRDGVCKAVKAVMDDDSEVGKDARQNHAELREFLI 346 (369)
Q Consensus 308 ~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~ 346 (369)
-+.+++.++|.++++ ++..+.++.+-+....
T Consensus 321 ---~~~~~~~~~i~~l~~-----~~~~~~~~~~~~~~~~ 351 (365)
T cd03809 321 ---LDPEALAAAIERLLE-----DPALREELRERGLARA 351 (365)
T ss_pred ---CCHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHH
Confidence 368899999999998 5666555554444433
No 97
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=97.57 E-value=0.0011 Score=62.71 Aligned_cols=108 Identities=16% Similarity=0.151 Sum_probs=69.0
Q ss_pred CCCeeEecccCh-HHhhcCCCccceeecCC----CchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecCCC
Q 017557 234 GRGFVHGGWVQQ-QLILKHPSVGCFVTHCG----SGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDED 308 (369)
Q Consensus 234 ~~~~~v~~~~pq-~~lL~~~~~~~~ItHgG----~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~ 308 (369)
..++.+.++..+ ..+++.+++ +|.-.. .+++.||+++|+|+|+- |...+...+++. |. .+..
T Consensus 244 ~~~v~~~g~~~~~~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i~~~-g~--~~~~---- 310 (360)
T cd04951 244 SNRVKLLGLRDDIAAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVVGDS-GL--IVPI---- 310 (360)
T ss_pred CCcEEEecccccHHHHHHhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEecCC-ce--EeCC----
Confidence 347888887654 568999998 555332 46899999999999974 444555556553 44 3443
Q ss_pred CccCHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 017557 309 GLFTRDGVCKAVKAVMDDDSEVGKDARQNHAELREFLISPGLENSYVDGFVQ 360 (369)
Q Consensus 309 ~~~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~v~ 360 (369)
-+.+++.++|.+++++ ++.+++...+-++.+.+.-+-+...+++.+
T Consensus 311 --~~~~~~~~~i~~ll~~----~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 356 (360)
T cd04951 311 --SDPEALANKIDEILKM----SGEERDIIGARRERIVKKFSINSIVQQWLT 356 (360)
T ss_pred --CCHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 3688999999999842 455555554444444444333444444443
No 98
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.48 E-value=0.0049 Score=59.44 Aligned_cols=123 Identities=12% Similarity=-0.003 Sum_probs=71.1
Q ss_pred eEEEeeCCCcc-CCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhcCCCeeEecccChHH---hhcCC
Q 017557 177 LIFCALGSECV-LKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGRGFVHGGWVQQQL---ILKHP 252 (369)
Q Consensus 177 ~v~vs~GS~~~-~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~---lL~~~ 252 (369)
.+++.+|+... ...+.+.++++. ..+..++++- .... .. ...+....+|+...+++|..+ .++++
T Consensus 206 ~~i~y~G~l~~~~d~~ll~~la~~--~p~~~~vliG-~~~~----~~----~~~~~~~~~nV~~~G~~~~~~l~~~l~~~ 274 (373)
T cd04950 206 PVIGYYGAIAEWLDLELLEALAKA--RPDWSFVLIG-PVDV----SI----DPSALLRLPNVHYLGPKPYKELPAYLAGF 274 (373)
T ss_pred CEEEEEeccccccCHHHHHHHHHH--CCCCEEEEEC-CCcC----cc----ChhHhccCCCEEEeCCCCHHHHHHHHHhC
Confidence 45666788774 222333333332 3466666653 3210 00 111111246999999998654 68888
Q ss_pred Cccceee------cCCC-chHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHHHhc
Q 017557 253 SVGCFVT------HCGS-GSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAVMD 325 (369)
Q Consensus 253 ~~~~~It------HgG~-~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ll~ 325 (369)
++.++-. .++. +.+.|++++|+|+|+.++ ...++.. + |..+.. -+.+++.++|++++.
T Consensus 275 Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~~~~-~-~~~~~~------~d~~~~~~ai~~~l~ 339 (373)
T cd04950 275 DVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVRRYE-D-EVVLIA------DDPEEFVAAIEKALL 339 (373)
T ss_pred CEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHHhhc-C-cEEEeC------CCHHHHHHHHHHHHh
Confidence 8843322 2232 458999999999998763 2223333 4 333332 268999999999875
No 99
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=97.45 E-value=0.003 Score=60.62 Aligned_cols=111 Identities=14% Similarity=0.089 Sum_probs=69.0
Q ss_pred CCeeEecccC-hHHhhcCCCcccee--ec--CCCchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecCCCC
Q 017557 235 RGFVHGGWVQ-QQLILKHPSVGCFV--TH--CGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDG 309 (369)
Q Consensus 235 ~~~~v~~~~p-q~~lL~~~~~~~~I--tH--gG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~ 309 (369)
.++.+.++.. ...+++.+++ +| ++ |-.+++.||+++|+|+|+-... .+...+++- ..|..++..
T Consensus 255 ~~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~----g~~e~i~~~-~~g~~~~~~---- 323 (374)
T TIGR03088 255 HLVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAVG----GNPELVQHG-VTGALVPPG---- 323 (374)
T ss_pred ceEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCCC----CcHHHhcCC-CceEEeCCC----
Confidence 3455555543 3568999998 66 33 3356899999999999996643 355566665 678888753
Q ss_pred ccCHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 017557 310 LFTRDGVCKAVKAVMDDDSEVGKDARQNHAELREFLISPGLENSYVDGFVQEL 362 (369)
Q Consensus 310 ~~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~v~~l 362 (369)
+.+++.++|.+++++ .+....+.+++++ .+.+.-+....+.++.+..
T Consensus 324 --d~~~la~~i~~l~~~-~~~~~~~~~~a~~---~~~~~fs~~~~~~~~~~~y 370 (374)
T TIGR03088 324 --DAVALARALQPYVSD-PAARRAHGAAGRA---RAEQQFSINAMVAAYAGLY 370 (374)
T ss_pred --CHHHHHHHHHHHHhC-HHHHHHHHHHHHH---HHHHhCCHHHHHHHHHHHH
Confidence 678999999999972 1111223333333 3333334444555555444
No 100
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=97.45 E-value=0.011 Score=57.93 Aligned_cols=79 Identities=10% Similarity=-0.041 Sum_probs=54.0
Q ss_pred CCCeeEecccChHH---hhcCCCccceeecC---C-CchHHHHHHhCCcccccccccchhHHHHHHh---hhcceEEEEe
Q 017557 234 GRGFVHGGWVQQQL---ILKHPSVGCFVTHC---G-SGSLSEAMVNECQLVLLPNVGDQIINSRLMG---EDLKVGVEVE 303 (369)
Q Consensus 234 ~~~~~v~~~~pq~~---lL~~~~~~~~ItHg---G-~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~---~~~g~G~~l~ 303 (369)
.++|.+.+++|+.+ +|+.+++ +|+-. | ..++.||+++|+|+|+.-..+. ....++ +- ..|+..
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp---~~~iv~~~~~g-~~G~l~- 376 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGP---LLDIVVPWDGG-PTGFLA- 376 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCC---chheeeccCCC-CceEEe-
Confidence 45888889988754 7888888 65421 2 2488999999999997643221 112222 34 577764
Q ss_pred ecCCCCccCHHHHHHHHHHHhcc
Q 017557 304 RGDEDGLFTRDGVCKAVKAVMDD 326 (369)
Q Consensus 304 ~~~~~~~~~~~~l~~ai~~ll~~ 326 (369)
-+++++.++|.+++++
T Consensus 377 -------~d~~~la~ai~~ll~~ 392 (419)
T cd03806 377 -------STAEEYAEAIEKILSL 392 (419)
T ss_pred -------CCHHHHHHHHHHHHhC
Confidence 2578999999999973
No 101
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=97.38 E-value=0.025 Score=53.43 Aligned_cols=128 Identities=11% Similarity=0.055 Sum_probs=75.1
Q ss_pred CceEEEeeCCCccC-CHHHHHHHHHHHHhc--CCcEEEEECCCCCCCccccCCchhHHHHh----cCCCeeEecccCh-H
Q 017557 175 KSLIFCALGSECVL-KKDQFQELILGFELT--GLPFFAALKPPTGHDTIESALPEGFEERV----KGRGFVHGGWVQQ-Q 246 (369)
Q Consensus 175 ~~~v~vs~GS~~~~-~~~~~~~~~~~l~~~--~~~~i~~~~~~~~~~~~~~~lp~~~~~~~----~~~~~~v~~~~pq-~ 246 (369)
+..+.+..|+.... ..+.+-+.+..+... +.+++++ |.+. ..+.+.+.. ...++...++..+ .
T Consensus 191 ~~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~iv-G~g~--------~~~~~~~~~~~~~~~~~v~~~g~~~~~~ 261 (358)
T cd03812 191 DKFVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLLV-GDGE--------LEEEIKKKVKELGLEDKVIFLGVRNDVP 261 (358)
T ss_pred CCEEEEEEeccccccChHHHHHHHHHHHHhCCCeEEEEE-eCCc--------hHHHHHHHHHhcCCCCcEEEecccCCHH
Confidence 34666677776542 234444444444433 4444444 3221 111222111 2357888887544 5
Q ss_pred HhhcCCCccceeec----CCCchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHH
Q 017557 247 LILKHPSVGCFVTH----CGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKA 322 (369)
Q Consensus 247 ~lL~~~~~~~~ItH----gG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ 322 (369)
.+++.+++ +|.- |-.+++.||+++|+|+|+-...+ ....+.+ +.|..... -+++++.++|.+
T Consensus 262 ~~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i~~--~~~~~~~~------~~~~~~a~~i~~ 327 (358)
T cd03812 262 ELLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDLTD--LVKFLSLD------ESPEIWAEEILK 327 (358)
T ss_pred HHHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhhcc--CccEEeCC------CCHHHHHHHHHH
Confidence 58899988 5543 33578999999999999865543 2233333 45554433 357999999999
Q ss_pred Hhc
Q 017557 323 VMD 325 (369)
Q Consensus 323 ll~ 325 (369)
+++
T Consensus 328 l~~ 330 (358)
T cd03812 328 LKS 330 (358)
T ss_pred HHh
Confidence 998
No 102
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=97.38 E-value=0.0026 Score=60.91 Aligned_cols=128 Identities=16% Similarity=0.112 Sum_probs=76.9
Q ss_pred eEEEeeCCCccCCHHHHHHHHHHHHhc--CCcEEEEECCCCCCCccccCCchhHHHHh----cCCCeeEecccCh--H--
Q 017557 177 LIFCALGSECVLKKDQFQELILGFELT--GLPFFAALKPPTGHDTIESALPEGFEERV----KGRGFVHGGWVQQ--Q-- 246 (369)
Q Consensus 177 ~v~vs~GS~~~~~~~~~~~~~~~l~~~--~~~~i~~~~~~~~~~~~~~~lp~~~~~~~----~~~~~~v~~~~pq--~-- 246 (369)
.+++..|.........+..+++++... +.+++++ |.+. .. +.+.+.. .+.++.+.+|.++ .
T Consensus 181 ~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~iv-G~g~----~~----~~l~~~~~~~~l~~~v~f~G~~~~~~~~~ 251 (359)
T PRK09922 181 AVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHII-GDGS----DF----EKCKAYSRELGIEQRIIWHGWQSQPWEVV 251 (359)
T ss_pred cEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEE-eCCc----cH----HHHHHHHHHcCCCCeEEEecccCCcHHHH
Confidence 555667765432222345566666543 3444443 3321 11 1222222 1458889898753 2
Q ss_pred -HhhcCCCccceeec----CCCchHHHHHHhCCcccccc-cccchhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHH
Q 017557 247 -LILKHPSVGCFVTH----CGSGSLSEAMVNECQLVLLP-NVGDQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAV 320 (369)
Q Consensus 247 -~lL~~~~~~~~ItH----gG~~s~~Eal~~GvP~i~~P-~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai 320 (369)
+.++.+++ +|.. |-..++.||+++|+|+|+.- ..+ ....+++. ..|..++. -+.+++.++|
T Consensus 252 ~~~~~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv~~~-~~G~lv~~------~d~~~la~~i 318 (359)
T PRK09922 252 QQKIKNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDIIKPG-LNGELYTP------GNIDEFVGKL 318 (359)
T ss_pred HHHHhcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHccCC-CceEEECC------CCHHHHHHHH
Confidence 34556777 6643 22478999999999999875 322 22455565 67888865 4789999999
Q ss_pred HHHhcc
Q 017557 321 KAVMDD 326 (369)
Q Consensus 321 ~~ll~~ 326 (369)
.+++++
T Consensus 319 ~~l~~~ 324 (359)
T PRK09922 319 NKVISG 324 (359)
T ss_pred HHHHhC
Confidence 999983
No 103
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.36 E-value=0.0017 Score=63.71 Aligned_cols=139 Identities=11% Similarity=0.105 Sum_probs=76.8
Q ss_pred CCceEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHH-hcCCCeeEecccChHH---hh
Q 017557 174 AKSLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEER-VKGRGFVHGGWVQQQL---IL 249 (369)
Q Consensus 174 ~~~~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~-~~~~~~~v~~~~pq~~---lL 249 (369)
++.++|.+|.+....+++.+....+-|+..+-..+|..+.... ....+-..+.+. +..+++.+.++.|+.+ .+
T Consensus 283 ~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~---~~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~~~ 359 (468)
T PF13844_consen 283 EDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPAS---GEARLRRRFAAHGVDPDRIIFSPVAPREEHLRRY 359 (468)
T ss_dssp SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTT---HHHHHHHHHHHTTS-GGGEEEEE---HHHHHHHG
T ss_pred CCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHH---HHHHHHHHHHHcCCChhhEEEcCCCCHHHHHHHh
Confidence 3559999999999899988888888888777778887654321 011111111111 2245677777777654 34
Q ss_pred cCCCcccee---ecCCCchHHHHHHhCCccccccccc-chhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHHHhc
Q 017557 250 KHPSVGCFV---THCGSGSLSEAMVNECQLVLLPNVG-DQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAVMD 325 (369)
Q Consensus 250 ~~~~~~~~I---tHgG~~s~~Eal~~GvP~i~~P~~~-DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ll~ 325 (369)
..+++ ++ ..+|.+|++||++.|||+|.+|--. =...-+..+... |+.-.+-.+ ..+-+..|+ ++-+
T Consensus 360 ~~~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~l-Gl~ElIA~s------~~eYv~~Av-~La~ 429 (468)
T PF13844_consen 360 QLADI--CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRAL-GLPELIADS------EEEYVEIAV-RLAT 429 (468)
T ss_dssp GG-SE--EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHH-T-GGGB-SS------HHHHHHHHH-HHHH
T ss_pred hhCCE--EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHc-CCchhcCCC------HHHHHHHHH-HHhC
Confidence 45666 65 3578899999999999999999532 334455667776 887655442 345566666 4544
No 104
>PRK10307 putative glycosyl transferase; Provisional
Probab=97.31 E-value=0.0093 Score=58.18 Aligned_cols=114 Identities=14% Similarity=0.171 Sum_probs=70.9
Q ss_pred CCeeEecccChHH---hhcCCCccceeecCCC------chHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeec
Q 017557 235 RGFVHGGWVQQQL---ILKHPSVGCFVTHCGS------GSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERG 305 (369)
Q Consensus 235 ~~~~v~~~~pq~~---lL~~~~~~~~ItHgG~------~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~ 305 (369)
.|+.+.+|+|+.+ +++.+++.++.+..+. +.+.|++++|+|+|+....+.. ....+. +.|+.++.+
T Consensus 284 ~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~~i~---~~G~~~~~~ 358 (412)
T PRK10307 284 PNVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQLVE---GIGVCVEPE 358 (412)
T ss_pred CceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHHHHh---CCcEEeCCC
Confidence 4799999998654 7889998656565443 2368999999999998654311 112222 678877753
Q ss_pred CCCCccCHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 017557 306 DEDGLFTRDGVCKAVKAVMDDDSEVGKDARQNHAELREFLISPGLENSYVDGFVQELH 363 (369)
Q Consensus 306 ~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~v~~l~ 363 (369)
+.+++.++|.+++++ .+....+++++++..+. .-+....++.+++.+.
T Consensus 359 ------d~~~la~~i~~l~~~-~~~~~~~~~~a~~~~~~---~fs~~~~~~~~~~~~~ 406 (412)
T PRK10307 359 ------SVEALVAAIAALARQ-ALLRPKLGTVAREYAER---TLDKENVLRQFIADIR 406 (412)
T ss_pred ------CHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHH---HcCHHHHHHHHHHHHH
Confidence 689999999999972 22233455555543332 2233444444444433
No 105
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.26 E-value=0.034 Score=52.88 Aligned_cols=145 Identities=11% Similarity=0.124 Sum_probs=90.8
Q ss_pred CceEEEeeCCCccCCHHHHHHHHHHH----Hhc-CCcEEEEECCCCCCCccccCCchhH-HHHhc-CCCeeEec---ccC
Q 017557 175 KSLIFCALGSECVLKKDQFQELILGF----ELT-GLPFFAALKPPTGHDTIESALPEGF-EERVK-GRGFVHGG---WVQ 244 (369)
Q Consensus 175 ~~~v~vs~GS~~~~~~~~~~~~~~~l----~~~-~~~~i~~~~~~~~~~~~~~~lp~~~-~~~~~-~~~~~v~~---~~p 244 (369)
+..+++++=-..... +.+.++.+++ +.. +..+|..+.... .+ ..+ ..+.+ .+++.+.+ |.+
T Consensus 204 ~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~~~~~viyp~H~~~-------~v-~e~~~~~L~~~~~v~li~pl~~~~ 274 (383)
T COG0381 204 KKYILVTAHRRENVG-EPLEEICEALREIAEEYPDVIVIYPVHPRP-------RV-RELVLKRLKNVERVKLIDPLGYLD 274 (383)
T ss_pred CcEEEEEcchhhccc-ccHHHHHHHHHHHHHhCCCceEEEeCCCCh-------hh-hHHHHHHhCCCCcEEEeCCcchHH
Confidence 448888764333332 4455555554 333 455555543320 01 011 12222 33666654 566
Q ss_pred hHHhhcCCCccceeecCCCchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHHHh
Q 017557 245 QQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAVM 324 (369)
Q Consensus 245 q~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ll 324 (369)
...++.++-+ ++|.+|. -.-||-..|+|++++=...+++. ..+. |.-+.+. .+.+.+.+++.+++
T Consensus 275 f~~L~~~a~~--iltDSGg-iqEEAp~lg~Pvl~lR~~TERPE----~v~a-gt~~lvg-------~~~~~i~~~~~~ll 339 (383)
T COG0381 275 FHNLMKNAFL--ILTDSGG-IQEEAPSLGKPVLVLRDTTERPE----GVEA-GTNILVG-------TDEENILDAATELL 339 (383)
T ss_pred HHHHHHhceE--EEecCCc-hhhhHHhcCCcEEeeccCCCCcc----ceec-CceEEeC-------ccHHHHHHHHHHHh
Confidence 7779999988 9999873 46689999999999988888887 2233 4444443 46799999999999
Q ss_pred ccCCcchHHHHHHHHHHHHHHhcC
Q 017557 325 DDDSEVGKDARQNHAELREFLISP 348 (369)
Q Consensus 325 ~~~~~~~~~~~~~a~~l~~~~~~~ 348 (369)
+ ++...++++....-..++
T Consensus 340 ~-----~~~~~~~m~~~~npYgdg 358 (383)
T COG0381 340 E-----DEEFYERMSNAKNPYGDG 358 (383)
T ss_pred h-----ChHHHHHHhcccCCCcCc
Confidence 8 677777766555544433
No 106
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=97.25 E-value=0.031 Score=52.22 Aligned_cols=128 Identities=14% Similarity=0.062 Sum_probs=75.7
Q ss_pred EEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHh-cCCCeeEecccChH---HhhcCCC
Q 017557 178 IFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERV-KGRGFVHGGWVQQQ---LILKHPS 253 (369)
Q Consensus 178 v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~-~~~~~~v~~~~pq~---~lL~~~~ 253 (369)
+.+..|.... ......+++++...+.+++++-.... ...+-....+.. ...++.+.+++++. .+++.++
T Consensus 173 ~i~~~Gr~~~--~Kg~~~li~~~~~~~~~l~i~G~~~~-----~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d 245 (335)
T cd03802 173 YLLFLGRISP--EKGPHLAIRAARRAGIPLKLAGPVSD-----PDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNAR 245 (335)
T ss_pred EEEEEEeecc--ccCHHHHHHHHHhcCCeEEEEeCCCC-----HHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCc
Confidence 3444566532 22245566777777777666533211 011000111111 24689999999875 4688888
Q ss_pred ccceeec--CCC-chHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHHHhc
Q 017557 254 VGCFVTH--CGS-GSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAVMD 325 (369)
Q Consensus 254 ~~~~ItH--gG~-~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ll~ 325 (369)
+-++-+. -|. .++.||+++|+|+|+-... .+...+.+. ..|+.++ ..+++.++|.+++.
T Consensus 246 ~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~----~~~e~i~~~-~~g~l~~--------~~~~l~~~l~~l~~ 307 (335)
T cd03802 246 ALLFPILWEEPFGLVMIEAMACGTPVIAFRRG----AVPEVVEDG-VTGFLVD--------SVEELAAAVARADR 307 (335)
T ss_pred EEEeCCcccCCcchHHHHHHhcCCCEEEeCCC----CchhheeCC-CcEEEeC--------CHHHHHHHHHHHhc
Confidence 8333332 343 5799999999999987653 333444443 4777663 27899999988875
No 107
>PLN02949 transferase, transferring glycosyl groups
Probab=97.23 E-value=0.068 Score=53.15 Aligned_cols=110 Identities=12% Similarity=0.041 Sum_probs=63.7
Q ss_pred CCCeeEecccChHH---hhcCCCccceee---cCCC-chHHHHHHhCCccccccccc---chhHHHHHHhhhcceEEEEe
Q 017557 234 GRGFVHGGWVQQQL---ILKHPSVGCFVT---HCGS-GSLSEAMVNECQLVLLPNVG---DQIINSRLMGEDLKVGVEVE 303 (369)
Q Consensus 234 ~~~~~v~~~~pq~~---lL~~~~~~~~It---HgG~-~s~~Eal~~GvP~i~~P~~~---DQ~~na~~v~~~~g~G~~l~ 303 (369)
.+++.+.+++|+.+ +|+.+++ +|+ +=|. .++.||+++|+|+|+....+ |.-.+. ..- ..|...
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~eIV~~~---~~g-~tG~l~- 406 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKMDIVLDE---DGQ-QTGFLA- 406 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcceeeecC---CCC-cccccC-
Confidence 45788889998654 7888887 663 2233 37999999999999976432 110100 001 123332
Q ss_pred ecCCCCccCHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 017557 304 RGDEDGLFTRDGVCKAVKAVMDDDSEVGKDARQNHAELREFLISPGLENSYVDGFVQE 361 (369)
Q Consensus 304 ~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~v~~ 361 (369)
-+.+++.++|.++++++++....+++++++-.+. -+.++-.+++.+.
T Consensus 407 -------~~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~----FS~e~~~~~~~~~ 453 (463)
T PLN02949 407 -------TTVEEYADAILEVLRMRETERLEIAAAARKRANR----FSEQRFNEDFKDA 453 (463)
T ss_pred -------CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH----cCHHHHHHHHHHH
Confidence 2578999999999973122223455665554332 3334444444443
No 108
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.17 E-value=0.043 Score=56.32 Aligned_cols=74 Identities=12% Similarity=0.013 Sum_probs=50.2
Q ss_pred CeeEecccChH-HhhcCCCccceeecC---C-CchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecCCCCc
Q 017557 236 GFVHGGWVQQQ-LILKHPSVGCFVTHC---G-SGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGL 310 (369)
Q Consensus 236 ~~~v~~~~pq~-~lL~~~~~~~~ItHg---G-~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~ 310 (369)
++.+.++.++. .+++.+++ ||.=+ | .+++.||+++|+|+|+--..+... +.+. +.|. +.
T Consensus 602 ~V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V~~g-~nGl-l~------- 665 (794)
T PLN02501 602 NLNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----FRSF-PNCL-TY------- 665 (794)
T ss_pred EEEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----Eeec-CCeE-ec-------
Confidence 35556666655 48999998 77532 2 368899999999999987654221 2222 3333 22
Q ss_pred cCHHHHHHHHHHHhc
Q 017557 311 FTRDGVCKAVKAVMD 325 (369)
Q Consensus 311 ~~~~~l~~ai~~ll~ 325 (369)
-+.+++.++|.+++.
T Consensus 666 ~D~EafAeAI~~LLs 680 (794)
T PLN02501 666 KTSEDFVAKVKEALA 680 (794)
T ss_pred CCHHHHHHHHHHHHh
Confidence 258899999999998
No 109
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.08 E-value=0.0019 Score=52.23 Aligned_cols=79 Identities=23% Similarity=0.326 Sum_probs=50.7
Q ss_pred CCCeeEecccCh-HHhhcCCCccceeecC--C-CchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecCCCC
Q 017557 234 GRGFVHGGWVQQ-QLILKHPSVGCFVTHC--G-SGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDG 309 (369)
Q Consensus 234 ~~~~~v~~~~pq-~~lL~~~~~~~~ItHg--G-~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~ 309 (369)
.+|+.+.+|++. .++++.+++.+..+.. | -+++.|++++|+|+|+.+.. .....+.. +.|..+ .
T Consensus 52 ~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~~-----~~~~~~~~-~~~~~~-~----- 119 (135)
T PF13692_consen 52 RPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDNG-----AEGIVEED-GCGVLV-A----- 119 (135)
T ss_dssp HCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHHH-----CHCHS----SEEEE--T-----
T ss_pred CCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCcc-----hhhheeec-CCeEEE-C-----
Confidence 359999999865 3488999996665532 2 37899999999999998761 22344445 888777 3
Q ss_pred ccCHHHHHHHHHHHhc
Q 017557 310 LFTRDGVCKAVKAVMD 325 (369)
Q Consensus 310 ~~~~~~l~~ai~~ll~ 325 (369)
-+++++.++|+++++
T Consensus 120 -~~~~~l~~~i~~l~~ 134 (135)
T PF13692_consen 120 -NDPEELAEAIERLLN 134 (135)
T ss_dssp -T-HHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHhc
Confidence 389999999999986
No 110
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.04 E-value=0.044 Score=51.80 Aligned_cols=75 Identities=23% Similarity=0.324 Sum_probs=49.8
Q ss_pred CCCeeEecccChHH---hhcCCCccceeecCCC-----chHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeec
Q 017557 234 GRGFVHGGWVQQQL---ILKHPSVGCFVTHCGS-----GSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERG 305 (369)
Q Consensus 234 ~~~~~v~~~~pq~~---lL~~~~~~~~ItHgG~-----~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~ 305 (369)
.+++.+.+++|+.+ .+..+++ ++.+.-. +++.||+++|+|+|+....+ +...+.. .|......
T Consensus 247 ~~~V~~~g~~~~~~~~~~~~~ad~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~~~---~g~~~~~~ 317 (363)
T cd04955 247 DPRIIFVGPIYDQELLELLRYAAL--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVLGD---KAIYFKVG 317 (363)
T ss_pred CCcEEEccccChHHHHHHHHhCCE--EEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceeecC---CeeEecCc
Confidence 56899999998864 6667777 6554432 47899999999999875432 1122222 23333332
Q ss_pred CCCCccCHHHHHHHHHHHhc
Q 017557 306 DEDGLFTRDGVCKAVKAVMD 325 (369)
Q Consensus 306 ~~~~~~~~~~l~~ai~~ll~ 325 (369)
+ .+.++|.++++
T Consensus 318 ~--------~l~~~i~~l~~ 329 (363)
T cd04955 318 D--------DLASLLEELEA 329 (363)
T ss_pred h--------HHHHHHHHHHh
Confidence 1 29999999998
No 111
>PLN02275 transferase, transferring glycosyl groups
Probab=97.01 E-value=0.049 Score=52.46 Aligned_cols=75 Identities=11% Similarity=0.186 Sum_probs=53.7
Q ss_pred CCeeEec-ccChHH---hhcCCCccceee-c-----CC-CchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEe
Q 017557 235 RGFVHGG-WVQQQL---ILKHPSVGCFVT-H-----CG-SGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVE 303 (369)
Q Consensus 235 ~~~~v~~-~~pq~~---lL~~~~~~~~It-H-----gG-~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~ 303 (369)
.|+.+.. |+|+.+ +|+.+++ ||. + -| -+++.||+++|+|+|+... ..+...+++. +.|+.++
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~----gg~~eiv~~g-~~G~lv~ 358 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIGELVKDG-KNGLLFS 358 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecC----CChHHHccCC-CCeEEEC
Confidence 3566544 788765 5889999 763 1 12 2479999999999999643 2366677777 8899874
Q ss_pred ecCCCCccCHHHHHHHHHHHh
Q 017557 304 RGDEDGLFTRDGVCKAVKAVM 324 (369)
Q Consensus 304 ~~~~~~~~~~~~l~~ai~~ll 324 (369)
+.+++.++|.+++
T Consensus 359 --------~~~~la~~i~~l~ 371 (371)
T PLN02275 359 --------SSSELADQLLELL 371 (371)
T ss_pred --------CHHHHHHHHHHhC
Confidence 2578888888764
No 112
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=97.01 E-value=0.015 Score=55.98 Aligned_cols=92 Identities=11% Similarity=0.052 Sum_probs=62.9
Q ss_pred CCCeeEecccChH---HhhcCCCccceeecC---C-CchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecC
Q 017557 234 GRGFVHGGWVQQQ---LILKHPSVGCFVTHC---G-SGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGD 306 (369)
Q Consensus 234 ~~~~~v~~~~pq~---~lL~~~~~~~~ItHg---G-~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~ 306 (369)
..++.+.+++|+. .+++.+++ ++... | ..++.||+++|+|+|+.-.. .....+.+. +.|+.++
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~~----~~~e~i~~~-~~g~~~~--- 348 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNSG----GPLETVVDG-ETGFLCE--- 348 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECCC----CcHHHhccC-CceEEeC---
Confidence 3689999999876 47888888 66422 2 25789999999999986432 234456665 6787764
Q ss_pred CCCccCHHHHHHHHHHHhccCCcchHHHHHHHHH
Q 017557 307 EDGLFTRDGVCKAVKAVMDDDSEVGKDARQNHAE 340 (369)
Q Consensus 307 ~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~ 340 (369)
.+.+++.++|.+++++ ++....+++++++
T Consensus 349 ----~~~~~~a~~i~~l~~~-~~~~~~~~~~a~~ 377 (392)
T cd03805 349 ----PTPEEFAEAMLKLAND-PDLADRMGAAGRK 377 (392)
T ss_pred ----CCHHHHHHHHHHHHhC-hHHHHHHHHHHHH
Confidence 2578999999999983 2222344444443
No 113
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.98 E-value=0.02 Score=57.09 Aligned_cols=80 Identities=18% Similarity=0.162 Sum_probs=58.6
Q ss_pred CCCeeEecccChHHhhcCCCccceeecC----CCchHHHHHHhCCcccccccccchhHHHHHHhhh----c-ceEEEEee
Q 017557 234 GRGFVHGGWVQQQLILKHPSVGCFVTHC----GSGSLSEAMVNECQLVLLPNVGDQIINSRLMGED----L-KVGVEVER 304 (369)
Q Consensus 234 ~~~~~v~~~~pq~~lL~~~~~~~~ItHg----G~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~----~-g~G~~l~~ 304 (369)
..++.+.+.....++++.+++ +|.-. --+++.||+++|+|+|+- |.......+.+. + ..|+.++.
T Consensus 353 ~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVat----d~g~~~elv~~~~~~~~g~~G~lv~~ 426 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVAT----DVGSCRELIEGADDEALGPAGEVVPP 426 (475)
T ss_pred CCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEEC----CCCChHHHhcCCcccccCCceEEECC
Confidence 458888886666778998888 65432 246899999999999994 334444555552 0 27888876
Q ss_pred cCCCCccCHHHHHHHHHHHhc
Q 017557 305 GDEDGLFTRDGVCKAVKAVMD 325 (369)
Q Consensus 305 ~~~~~~~~~~~l~~ai~~ll~ 325 (369)
-+.+++.++|.++++
T Consensus 427 ------~d~~~la~ai~~ll~ 441 (475)
T cd03813 427 ------ADPEALARAILRLLK 441 (475)
T ss_pred ------CCHHHHHHHHHHHhc
Confidence 368999999999998
No 114
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=96.97 E-value=0.2 Score=52.67 Aligned_cols=79 Identities=10% Similarity=0.034 Sum_probs=51.7
Q ss_pred CCeeEeccc-Ch---HHhhcC-CC-ccceeec---CC-CchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEee
Q 017557 235 RGFVHGGWV-QQ---QLILKH-PS-VGCFVTH---CG-SGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVER 304 (369)
Q Consensus 235 ~~~~v~~~~-pq---~~lL~~-~~-~~~~ItH---gG-~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~ 304 (369)
.+|...++. +. .+++.+ ++ .++||.= =| ..++.||+++|+|+|+--. ......+++- ..|+.++.
T Consensus 619 g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~----GG~~EiV~dg-~tGfLVdp 693 (784)
T TIGR02470 619 GQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRF----GGPLEIIQDG-VSGFHIDP 693 (784)
T ss_pred CeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCC----CCHHHHhcCC-CcEEEeCC
Confidence 467766653 32 235543 21 1227642 22 3589999999999998643 3455566666 78999987
Q ss_pred cCCCCccCHHHHHHHHHHHh
Q 017557 305 GDEDGLFTRDGVCKAVKAVM 324 (369)
Q Consensus 305 ~~~~~~~~~~~l~~ai~~ll 324 (369)
. +++.+.++|.+++
T Consensus 694 ~------D~eaLA~aL~~ll 707 (784)
T TIGR02470 694 Y------HGEEAAEKIVDFF 707 (784)
T ss_pred C------CHHHHHHHHHHHH
Confidence 4 5788999988876
No 115
>PLN00142 sucrose synthase
Probab=96.92 E-value=0.17 Score=53.17 Aligned_cols=60 Identities=12% Similarity=0.064 Sum_probs=41.6
Q ss_pred CCccceeec---CCC-chHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHHHh
Q 017557 252 PSVGCFVTH---CGS-GSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAVM 324 (369)
Q Consensus 252 ~~~~~~ItH---gG~-~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ll 324 (369)
+++ ||.= =|. .++.||+++|+|+|+-.. ......+++- ..|+.++.. +.+++.++|.+++
T Consensus 667 aDV--fVlPS~~EgFGLvvLEAMA~GlPVVATdv----GG~~EIV~dG-~tG~LV~P~------D~eaLA~aI~~lL 730 (815)
T PLN00142 667 KGA--FVQPALYEAFGLTVVEAMTCGLPTFATCQ----GGPAEIIVDG-VSGFHIDPY------HGDEAANKIADFF 730 (815)
T ss_pred CCE--EEeCCcccCCCHHHHHHHHcCCCEEEcCC----CCHHHHhcCC-CcEEEeCCC------CHHHHHHHHHHHH
Confidence 345 6643 344 489999999999998644 3345566666 689998864 5777777776544
No 116
>PLN02846 digalactosyldiacylglycerol synthase
Probab=96.80 E-value=0.33 Score=48.09 Aligned_cols=71 Identities=13% Similarity=0.116 Sum_probs=50.5
Q ss_pred EecccChHHhhcCCCccceeecCC----CchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecCCCCccCHH
Q 017557 239 HGGWVQQQLILKHPSVGCFVTHCG----SGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGLFTRD 314 (369)
Q Consensus 239 v~~~~pq~~lL~~~~~~~~ItHgG----~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~ 314 (369)
..++.+..++++..++ ||.=+- .+++.||+++|+|+|+.-..+ | ..+.+- +.|...+ +.+
T Consensus 288 f~G~~~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v~~~-~ng~~~~--------~~~ 351 (462)
T PLN02846 288 YPGRDHADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFFKQF-PNCRTYD--------DGK 351 (462)
T ss_pred ECCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCC----c-ceeecC-CceEecC--------CHH
Confidence 4456666679998888 887642 468899999999999986432 2 334444 5554441 567
Q ss_pred HHHHHHHHHhc
Q 017557 315 GVCKAVKAVMD 325 (369)
Q Consensus 315 ~l~~ai~~ll~ 325 (369)
++.+++.++|.
T Consensus 352 ~~a~ai~~~l~ 362 (462)
T PLN02846 352 GFVRATLKALA 362 (462)
T ss_pred HHHHHHHHHHc
Confidence 99999999997
No 117
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.02 Score=56.72 Aligned_cols=133 Identities=12% Similarity=0.105 Sum_probs=92.8
Q ss_pred CCCceEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHH-----hcCCCeeEecccChHH
Q 017557 173 KAKSLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEER-----VKGRGFVHGGWVQQQL 247 (369)
Q Consensus 173 ~~~~~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~-----~~~~~~~v~~~~pq~~ 247 (369)
+++.+||+||+......++.+....+-|+..+-.++|..+.+.+ ..+-..+++. +.+.++++.+-.|..+
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~-----~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~ 501 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDD-----AEINARLRDLAEREGVDSERLRFLPPAPNED 501 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCc-----HHHHHHHHHHHHHcCCChhheeecCCCCCHH
Confidence 34569999999999999999888888888888888998876522 1222222211 3355777777766543
Q ss_pred ---hhcCCCccceee---cCCCchHHHHHHhCCcccccccccchhH--HHH-HHhhhcceEEEEeecCCCCccCHHHHHH
Q 017557 248 ---ILKHPSVGCFVT---HCGSGSLSEAMVNECQLVLLPNVGDQII--NSR-LMGEDLKVGVEVERGDEDGLFTRDGVCK 318 (369)
Q Consensus 248 ---lL~~~~~~~~It---HgG~~s~~Eal~~GvP~i~~P~~~DQ~~--na~-~v~~~~g~G~~l~~~~~~~~~~~~~l~~ 318 (369)
-+.-+++ |+. -||+.|..|++..|||+|.++ ++||. |+. .+... |+-..+-.+ .++-+.+
T Consensus 502 h~a~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~a-gi~e~vA~s------~~dYV~~ 570 (620)
T COG3914 502 HRARYGIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNA-GIPELVADS------RADYVEK 570 (620)
T ss_pred HHHhhchhhe--eeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhc-CCchhhcCC------HHHHHHH
Confidence 4445666 775 599999999999999999986 77765 333 44455 776666543 3566888
Q ss_pred HHH
Q 017557 319 AVK 321 (369)
Q Consensus 319 ai~ 321 (369)
+++
T Consensus 571 av~ 573 (620)
T COG3914 571 AVA 573 (620)
T ss_pred HHH
Confidence 884
No 118
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=96.39 E-value=0.1 Score=51.23 Aligned_cols=181 Identities=8% Similarity=0.005 Sum_probs=103.5
Q ss_pred HHhhhccCCCCceEEEeeCCCccC------CH----HHHHHHHHHHHhcCCcEEEEECCCCCC--CccccCCchhHHHHh
Q 017557 165 FEMLFSSFKAKSLIFCALGSECVL------KK----DQFQELILGFELTGLPFFAALKPPTGH--DTIESALPEGFEERV 232 (369)
Q Consensus 165 ~~~~l~~~~~~~~v~vs~GS~~~~------~~----~~~~~~~~~l~~~~~~~i~~~~~~~~~--~~~~~~lp~~~~~~~ 232 (369)
+..|+.....+++|-|+....... .. +.+.++++.|...++++++........ .......-..+.+.+
T Consensus 224 ~~~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~ 303 (426)
T PRK10017 224 VQHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDRMVALNLRQHV 303 (426)
T ss_pred hhhhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCccCCCCchHHHHHHHHHhc
Confidence 345655434456888876544311 11 234456666666788888765321100 000001112233333
Q ss_pred cCC-Cee--EecccChH--HhhcCCCccceeecCCCchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEE-EeecC
Q 017557 233 KGR-GFV--HGGWVQQQ--LILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVE-VERGD 306 (369)
Q Consensus 233 ~~~-~~~--v~~~~pq~--~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~-l~~~~ 306 (369)
..+ ++. ...+-|.. .+++++++ +|..= .-++.=|+..|||.+++++ | +.....+.+. |..-. ++..+
T Consensus 304 ~~~~~~~vi~~~~~~~e~~~iIs~~dl--~ig~R-lHa~I~a~~~gvP~i~i~Y--~-~K~~~~~~~l-g~~~~~~~~~~ 376 (426)
T PRK10017 304 SDPARYHVVMDELNDLEMGKILGACEL--TVGTR-LHSAIISMNFGTPAIAINY--E-HKSAGIMQQL-GLPEMAIDIRH 376 (426)
T ss_pred ccccceeEecCCCChHHHHHHHhhCCE--EEEec-chHHHHHHHcCCCEEEeee--h-HHHHHHHHHc-CCccEEechhh
Confidence 322 222 22233443 68888887 88643 3467779999999999998 3 3444445666 87755 55555
Q ss_pred CCCccCHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 017557 307 EDGLFTRDGVCKAVKAVMDDDSEVGKDARQNHAELREFLISPGLENSYVDGFVQEL 362 (369)
Q Consensus 307 ~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~v~~l 362 (369)
++.++|.+.+++++.+ .+.+++..++--+.+++ .+.+...++++.+
T Consensus 377 ----l~~~~Li~~v~~~~~~----r~~~~~~l~~~v~~~r~--~~~~~~~~~~~~~ 422 (426)
T PRK10017 377 ----LLDGSLQAMVADTLGQ----LPALNARLAEAVSRERQ--TGMQMVQSVLERI 422 (426)
T ss_pred ----CCHHHHHHHHHHHHhC----HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHh
Confidence 8899999999999985 56677776666666664 2233444554443
No 119
>PHA01633 putative glycosyl transferase group 1
Probab=96.09 E-value=0.26 Score=46.77 Aligned_cols=82 Identities=10% Similarity=0.042 Sum_probs=55.1
Q ss_pred CCeeEe---cccChH---HhhcCCCccceeecC---CC-chHHHHHHhCCccccccc------ccch------hHHHHHH
Q 017557 235 RGFVHG---GWVQQQ---LILKHPSVGCFVTHC---GS-GSLSEAMVNECQLVLLPN------VGDQ------IINSRLM 292 (369)
Q Consensus 235 ~~~~v~---~~~pq~---~lL~~~~~~~~ItHg---G~-~s~~Eal~~GvP~i~~P~------~~DQ------~~na~~v 292 (369)
.++.+. +++++. .+++.+++ ||.-+ |+ .++.||+++|+|+|+--. .+|+ ..+....
T Consensus 201 ~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~ 278 (335)
T PHA01633 201 ANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEY 278 (335)
T ss_pred CcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHh
Confidence 477776 445543 57888888 77532 43 578899999999998633 2232 2233222
Q ss_pred h--hhcceEEEEeecCCCCccCHHHHHHHHHHHhc
Q 017557 293 G--EDLKVGVEVERGDEDGLFTRDGVCKAVKAVMD 325 (369)
Q Consensus 293 ~--~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ll~ 325 (369)
. .. |.|..++. .+++++.++|.+++.
T Consensus 279 ~~~~~-g~g~~~~~------~d~~~la~ai~~~~~ 306 (335)
T PHA01633 279 YDKEH-GQKWKIHK------FQIEDMANAIILAFE 306 (335)
T ss_pred cCccc-CceeeecC------CCHHHHHHHHHHHHh
Confidence 2 35 77777765 689999999999865
No 120
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=95.69 E-value=0.016 Score=44.36 Aligned_cols=62 Identities=11% Similarity=0.127 Sum_probs=47.6
Q ss_pred hHHHhhhccCCCCceEEEeeCCCccC---CH--HHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCch
Q 017557 163 EEFEMLFSSFKAKSLIFCALGSECVL---KK--DQFQELILGFELTGLPFFAALKPPTGHDTIESALPE 226 (369)
Q Consensus 163 ~~~~~~l~~~~~~~~v~vs~GS~~~~---~~--~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~ 226 (369)
..+..|+...+.++.|+||+||.... .. ..+..+++++...+..+|..+...... ....+|+
T Consensus 28 ~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~~~--~lg~lP~ 94 (97)
T PF06722_consen 28 AVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQRA--ELGELPD 94 (97)
T ss_dssp EEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCCCG--GCCS-TT
T ss_pred CCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHHHH--hhCCCCC
Confidence 34566999889999999999998863 22 468899999999999999999865332 2356665
No 121
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=95.49 E-value=0.31 Score=48.49 Aligned_cols=134 Identities=15% Similarity=0.068 Sum_probs=73.3
Q ss_pred ceEEEeeCCCccCC-HHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhc--CCCeeEecccChH---Hhh
Q 017557 176 SLIFCALGSECVLK-KDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVK--GRGFVHGGWVQQQ---LIL 249 (369)
Q Consensus 176 ~~v~vs~GS~~~~~-~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~--~~~~~v~~~~pq~---~lL 249 (369)
..+++..|...... .+.+.+.++.+...+.+++++-... ..+.+.+.+... ..++.+..-.++. .++
T Consensus 296 ~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 368 (476)
T cd03791 296 APLFGFVGRLTEQKGIDLLLEALPELLELGGQLVILGSGD-------PEYEEALRELAARYPGRVAVLIGYDEALAHLIY 368 (476)
T ss_pred CCEEEEEeeccccccHHHHHHHHHHHHHcCcEEEEEecCC-------HHHHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Confidence 35566667765422 2334444444444455665553221 111112222221 3566644333432 477
Q ss_pred cCCCccceeecC---CC-chHHHHHHhCCccccccccc--chhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHHH
Q 017557 250 KHPSVGCFVTHC---GS-GSLSEAMVNECQLVLLPNVG--DQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAV 323 (369)
Q Consensus 250 ~~~~~~~~ItHg---G~-~s~~Eal~~GvP~i~~P~~~--DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~l 323 (369)
+.+++ ++.-. |. .+.+||+++|+|+|+-...+ |.-.+...-.+. |.|+.++.. +.+++.++|.++
T Consensus 369 ~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~-~~G~~~~~~------~~~~l~~~i~~~ 439 (476)
T cd03791 369 AGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGE-GTGFVFEGY------NADALLAALRRA 439 (476)
T ss_pred HhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCC-CCeEEeCCC------CHHHHHHHHHHH
Confidence 88888 66421 22 47789999999999765532 221111111134 589988763 688999999998
Q ss_pred hc
Q 017557 324 MD 325 (369)
Q Consensus 324 l~ 325 (369)
+.
T Consensus 440 l~ 441 (476)
T cd03791 440 LA 441 (476)
T ss_pred HH
Confidence 85
No 122
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.46 E-value=0.12 Score=51.77 Aligned_cols=135 Identities=11% Similarity=0.149 Sum_probs=87.4
Q ss_pred CCceEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHH---H--hcCCCeeEecccChH--
Q 017557 174 AKSLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEE---R--VKGRGFVHGGWVQQQ-- 246 (369)
Q Consensus 174 ~~~~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~---~--~~~~~~~v~~~~pq~-- 246 (369)
++.+||.+|--....+++.+...++-|..-+-.++|..+.....+ ..|.. . +.++.|.+.+-+.-.
T Consensus 757 ~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge-------~rf~ty~~~~Gl~p~riifs~va~k~eH 829 (966)
T KOG4626|consen 757 EDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGE-------QRFRTYAEQLGLEPDRIIFSPVAAKEEH 829 (966)
T ss_pred CCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccch-------HHHHHHHHHhCCCccceeeccccchHHH
Confidence 355999999888889999988888888888888999987653211 12221 1 224455554444322
Q ss_pred ---HhhcCCCccceeecCCCchHHHHHHhCCcccccccccch-hHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHH
Q 017557 247 ---LILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQ-IINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKA 322 (369)
Q Consensus 247 ---~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~P~~~DQ-~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ 322 (369)
..|..-.+.-+.+. |..|.++.++.|||||.+|.-.-- ..-+..+... |+|-.+-+. ..|-...+|+-
T Consensus 830 vrr~~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~-Gl~hliak~------~eEY~~iaV~L 901 (966)
T KOG4626|consen 830 VRRGQLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTAL-GLGHLIAKN------REEYVQIAVRL 901 (966)
T ss_pred HHhhhhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHHHc-ccHHHHhhh------HHHHHHHHHHh
Confidence 23433333336665 688999999999999999985433 3334455666 999866653 34445556643
Q ss_pred H
Q 017557 323 V 323 (369)
Q Consensus 323 l 323 (369)
-
T Consensus 902 a 902 (966)
T KOG4626|consen 902 A 902 (966)
T ss_pred h
Confidence 3
No 123
>PHA01630 putative group 1 glycosyl transferase
Probab=94.98 E-value=1.2 Score=42.14 Aligned_cols=110 Identities=7% Similarity=0.029 Sum_probs=62.6
Q ss_pred ccChHH---hhcCCCcccee--ec-CC-CchHHHHHHhCCccccccccc--chhH---HHHHHhh-----------hcce
Q 017557 242 WVQQQL---ILKHPSVGCFV--TH-CG-SGSLSEAMVNECQLVLLPNVG--DQII---NSRLMGE-----------DLKV 298 (369)
Q Consensus 242 ~~pq~~---lL~~~~~~~~I--tH-gG-~~s~~Eal~~GvP~i~~P~~~--DQ~~---na~~v~~-----------~~g~ 298 (369)
++|+.+ +++.+++ |+ ++ .| ..++.||+++|+|+|+.-..+ |.-. |+-.+.. . ++
T Consensus 197 ~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~-~~ 273 (331)
T PHA01630 197 PLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPI-HV 273 (331)
T ss_pred cCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCc-cc
Confidence 366443 6888888 65 33 22 458999999999999976432 2211 1110100 1 24
Q ss_pred EEEEeecCCCCccCHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 017557 299 GVEVERGDEDGLFTRDGVCKAVKAVMDDDSEVGKDARQNHAELREFLISPGLENSYVDGFVQELH 363 (369)
Q Consensus 299 G~~l~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~v~~l~ 363 (369)
|+.++ .+.+++.+++.+++.+ ..++.++++.+.-+....+.-+-...++++.+-+.
T Consensus 274 G~~v~-------~~~~~~~~~ii~~l~~--~~~~~~~~~~~~~~~~~~~~fs~~~ia~k~~~l~~ 329 (331)
T PHA01630 274 GYFLD-------PDIEDAYQKLLEALAN--WTPEKKKENLEGRAILYRENYSYNAIAKMWEKILE 329 (331)
T ss_pred ccccC-------CCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 44433 2456777777788862 11255666665555555555555555666666554
No 124
>PRK14098 glycogen synthase; Provisional
Probab=94.97 E-value=0.58 Score=46.91 Aligned_cols=130 Identities=8% Similarity=0.035 Sum_probs=74.4
Q ss_pred eEEEeeCCCccCC-HHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhc--CCCeeEecccChH---Hhhc
Q 017557 177 LIFCALGSECVLK-KDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVK--GRGFVHGGWVQQQ---LILK 250 (369)
Q Consensus 177 ~v~vs~GS~~~~~-~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~--~~~~~v~~~~pq~---~lL~ 250 (369)
.++...|...... .+.+.+.+..+...+.+++++ |.+. ...-+.+.+... +.++.+.++.+.. .+++
T Consensus 308 ~~i~~vgRl~~~KG~d~li~a~~~l~~~~~~lviv-G~G~------~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a 380 (489)
T PRK14098 308 PLVGVIINFDDFQGAELLAESLEKLVELDIQLVIC-GSGD------KEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIA 380 (489)
T ss_pred CEEEEeccccccCcHHHHHHHHHHHHhcCcEEEEE-eCCC------HHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHH
Confidence 4555666655422 233444444444446666555 3321 011112322211 3578888888764 5888
Q ss_pred CCCccceeecC---CC-chHHHHHHhCCccccccccc--chhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHHHh
Q 017557 251 HPSVGCFVTHC---GS-GSLSEAMVNECQLVLLPNVG--DQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAVM 324 (369)
Q Consensus 251 ~~~~~~~ItHg---G~-~s~~Eal~~GvP~i~~P~~~--DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ll 324 (369)
.+++ |+.-+ |. .+.+||+++|+|.|+....+ |...+ ..++. +.|+.++. -+++.+.++|.+++
T Consensus 381 ~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~--~~~~~-~~G~l~~~------~d~~~la~ai~~~l 449 (489)
T PRK14098 381 GLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEE--VSEDK-GSGFIFHD------YTPEALVAKLGEAL 449 (489)
T ss_pred hCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeec--CCCCC-CceeEeCC------CCHHHHHHHHHHHH
Confidence 8998 77533 22 37789999999888765432 21111 11234 77888866 46899999998876
No 125
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=94.76 E-value=0.6 Score=47.16 Aligned_cols=65 Identities=17% Similarity=0.152 Sum_probs=48.7
Q ss_pred CCCeeEecccCh-HHhhcCCCccceeec---CC-CchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeec
Q 017557 234 GRGFVHGGWVQQ-QLILKHPSVGCFVTH---CG-SGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERG 305 (369)
Q Consensus 234 ~~~~~v~~~~pq-~~lL~~~~~~~~ItH---gG-~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~ 305 (369)
..++.+.+|... ..+|+.+++ ||.. -| .+++.||+++|+|+|+-.. ..+...+.+- ..|+.++..
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV~dG-~nG~LVp~~ 523 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECFIEG-VSGFILDDA 523 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCC----CCcHHHcccC-CcEEEECCC
Confidence 367888888654 448899999 8753 34 4689999999999997754 3456667777 889988764
No 126
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=94.57 E-value=0.83 Score=45.50 Aligned_cols=133 Identities=12% Similarity=0.057 Sum_probs=73.3
Q ss_pred eEEEeeCCCccC-CHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHh--cCCCeeEecccChH---Hhhc
Q 017557 177 LIFCALGSECVL-KKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERV--KGRGFVHGGWVQQQ---LILK 250 (369)
Q Consensus 177 ~v~vs~GS~~~~-~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~--~~~~~~v~~~~pq~---~lL~ 250 (369)
.+++..|..... ..+.+.+.+..+...+.+++++ |.+. ..+.+.+.+.. .+.++.+....+.. .+++
T Consensus 292 ~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~-G~g~------~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~ 364 (473)
T TIGR02095 292 PLFGVISRLTQQKGVDLLLAALPELLELGGQLVVL-GTGD------PELEEALRELAERYPGNVRVIIGYDEALAHLIYA 364 (473)
T ss_pred CEEEEEecCccccChHHHHHHHHHHHHcCcEEEEE-CCCC------HHHHHHHHHHHHHCCCcEEEEEcCCHHHHHHHHH
Confidence 555566776542 2334444444444445666655 3321 11112222211 13456555555543 4788
Q ss_pred CCCccceeecC---CC-chHHHHHHhCCccccccccc--chhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHHHh
Q 017557 251 HPSVGCFVTHC---GS-GSLSEAMVNECQLVLLPNVG--DQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAVM 324 (369)
Q Consensus 251 ~~~~~~~ItHg---G~-~s~~Eal~~GvP~i~~P~~~--DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ll 324 (369)
.+++ ++.=. |. .+.+||+++|+|+|+-...+ |.-.+...-... +.|+.++. -+++++.++|.+++
T Consensus 365 ~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~-~~G~l~~~------~d~~~la~~i~~~l 435 (473)
T TIGR02095 365 GADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAES-GTGFLFEE------YDPGALLAALSRAL 435 (473)
T ss_pred hCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCC-CceEEeCC------CCHHHHHHHHHHHH
Confidence 8888 66422 33 37889999999999865432 221111000233 67888876 36889999999987
Q ss_pred c
Q 017557 325 D 325 (369)
Q Consensus 325 ~ 325 (369)
.
T Consensus 436 ~ 436 (473)
T TIGR02095 436 R 436 (473)
T ss_pred H
Confidence 5
No 127
>PRK10125 putative glycosyl transferase; Provisional
Probab=94.39 E-value=0.98 Score=44.11 Aligned_cols=100 Identities=13% Similarity=0.045 Sum_probs=59.5
Q ss_pred HHHHHHHHHhcCCc-EEEEECCCCCCCccccCCchhHHHHhcCCCeeEeccc-Ch---HHhhcCCCccceeecC----CC
Q 017557 193 FQELILGFELTGLP-FFAALKPPTGHDTIESALPEGFEERVKGRGFVHGGWV-QQ---QLILKHPSVGCFVTHC----GS 263 (369)
Q Consensus 193 ~~~~~~~l~~~~~~-~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~-pq---~~lL~~~~~~~~ItHg----G~ 263 (369)
+..+++++...+.+ -++.+|... ...+ .++...++. ++ ..+++.+++ ||.-. --
T Consensus 258 ~~~li~A~~~l~~~~~L~ivG~g~------~~~~---------~~v~~~g~~~~~~~l~~~y~~aDv--fV~pS~~Egfp 320 (405)
T PRK10125 258 DQQLVREMMALGDKIELHTFGKFS------PFTA---------GNVVNHGFETDKRKLMSALNQMDA--LVFSSRVDNYP 320 (405)
T ss_pred HHHHHHHHHhCCCCeEEEEEcCCC------cccc---------cceEEecCcCCHHHHHHHHHhCCE--EEECCccccCc
Confidence 46677777654433 244455421 0111 244444554 22 346777888 77533 24
Q ss_pred chHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHH
Q 017557 264 GSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVK 321 (369)
Q Consensus 264 ~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~ 321 (369)
+++.||+++|+|+|+-...+ ... +.+. +.|+.++.. +.+.|.++++
T Consensus 321 ~vilEAmA~G~PVVat~~gG----~~E-iv~~-~~G~lv~~~------d~~~La~~~~ 366 (405)
T PRK10125 321 LILCEALSIGVPVIATHSDA----ARE-VLQK-SGGKTVSEE------EVLQLAQLSK 366 (405)
T ss_pred CHHHHHHHcCCCEEEeCCCC----hHH-hEeC-CcEEEECCC------CHHHHHhccC
Confidence 68999999999999987654 222 3345 679988874 4677776543
No 128
>PRK00654 glgA glycogen synthase; Provisional
Probab=94.23 E-value=1.5 Score=43.69 Aligned_cols=134 Identities=12% Similarity=0.102 Sum_probs=72.1
Q ss_pred ceEEEeeCCCccC-CHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhc--CCCee-EecccCh--HHhh
Q 017557 176 SLIFCALGSECVL-KKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVK--GRGFV-HGGWVQQ--QLIL 249 (369)
Q Consensus 176 ~~v~vs~GS~~~~-~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~--~~~~~-v~~~~pq--~~lL 249 (369)
..+++..|..... ..+.+.+.+..+...+.+++++ |.+. ..+.+.+.+... +.++. ..+|-.. ..++
T Consensus 282 ~~~i~~vGRl~~~KG~~~li~a~~~l~~~~~~lviv-G~g~------~~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~~ 354 (466)
T PRK00654 282 APLFAMVSRLTEQKGLDLVLEALPELLEQGGQLVLL-GTGD------PELEEAFRALAARYPGKVGVQIGYDEALAHRIY 354 (466)
T ss_pred CcEEEEeeccccccChHHHHHHHHHHHhcCCEEEEE-ecCc------HHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHH
Confidence 3556666776532 2233333333333346777666 3321 111112222211 23444 3455322 2478
Q ss_pred cCCCccceeec---CCC-chHHHHHHhCCccccccccc--chhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHHH
Q 017557 250 KHPSVGCFVTH---CGS-GSLSEAMVNECQLVLLPNVG--DQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAV 323 (369)
Q Consensus 250 ~~~~~~~~ItH---gG~-~s~~Eal~~GvP~i~~P~~~--DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~l 323 (369)
+.+++ ||.- -|. .+.+||+++|+|.|+-...+ |.-.+...-.+. +.|+.++.. +++++.++|.++
T Consensus 355 ~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~-~~G~lv~~~------d~~~la~~i~~~ 425 (466)
T PRK00654 355 AGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGE-ATGFVFDDF------NAEDLLRALRRA 425 (466)
T ss_pred hhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCC-CceEEeCCC------CHHHHHHHHHHH
Confidence 88998 7642 244 47889999999999865422 211111111234 778888763 688999999998
Q ss_pred hc
Q 017557 324 MD 325 (369)
Q Consensus 324 l~ 325 (369)
+.
T Consensus 426 l~ 427 (466)
T PRK00654 426 LE 427 (466)
T ss_pred HH
Confidence 75
No 129
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=94.23 E-value=0.45 Score=35.60 Aligned_cols=81 Identities=7% Similarity=0.062 Sum_probs=51.9
Q ss_pred cCCCchHHHHHHhCCcccccccccchhHHHHHHhhhcc-eEEEEeecCCCCccCHHHHHHHHHHHhccCCcchHH-HHHH
Q 017557 260 HCGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLK-VGVEVERGDEDGLFTRDGVCKAVKAVMDDDSEVGKD-ARQN 337 (369)
Q Consensus 260 HgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g-~G~~l~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~-~~~~ 337 (369)
+|-..-+.|++++|+|+|+-+- ......+.+ | .++..+ +.+++.++|+.+++ ++. .++-
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~~~--~~~~~~~~--------~~~el~~~i~~ll~-----~~~~~~~i 69 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIFED--GEHIITYN--------DPEELAEKIEYLLE-----NPEERRRI 69 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHcCC--CCeEEEEC--------CHHHHHHHHHHHHC-----CHHHHHHH
Confidence 4445678999999999999865 222233222 3 333332 57899999999998 444 4444
Q ss_pred HHHHHHHHhcCCCCHHHHHHHH
Q 017557 338 HAELREFLISPGLENSYVDGFV 359 (369)
Q Consensus 338 a~~l~~~~~~~~~~~~~~~~~v 359 (369)
+++..+.+.+.-+..+.++.|+
T Consensus 70 a~~a~~~v~~~~t~~~~~~~il 91 (92)
T PF13524_consen 70 AKNARERVLKRHTWEHRAEQIL 91 (92)
T ss_pred HHHHHHHHHHhCCHHHHHHHHH
Confidence 5555555665555566666665
No 130
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=93.43 E-value=0.55 Score=44.03 Aligned_cols=143 Identities=15% Similarity=0.097 Sum_probs=78.7
Q ss_pred hhhccCCCCceEEEeeCCCcc---CCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhcCCCeeEecc-
Q 017557 167 MLFSSFKAKSLIFCALGSECV---LKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGRGFVHGGW- 242 (369)
Q Consensus 167 ~~l~~~~~~~~v~vs~GS~~~---~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~- 242 (369)
+++....+++.|.+..|+... .+.+.+.++++.|...++++++..+... .....+.+.+... +..+.+-
T Consensus 171 ~~~~~~~~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~-----e~~~~~~i~~~~~--~~~l~g~~ 243 (319)
T TIGR02193 171 AFLGHALPAPYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDA-----EKQRAERIAEALP--GAVVLPKM 243 (319)
T ss_pred hhhhccCCCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHH-----HHHHHHHHHhhCC--CCeecCCC
Confidence 344433345566666665333 6678899999999766788777655431 1111122222221 1122232
Q ss_pred -cCh-HHhhcCCCccceeecCCCchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHH
Q 017557 243 -VQQ-QLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAV 320 (369)
Q Consensus 243 -~pq-~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai 320 (369)
+++ ..+++++++ +|+. ..|.++=|.+.|+|+|++ ++ +.+..+..- ||-...+-....-..++++++.+++
T Consensus 244 sL~el~ali~~a~l--~I~~-DSgp~HlAaa~g~P~i~l--fg--~t~p~~~~P-~~~~~~~~~~~~~~~I~~~~V~~ai 315 (319)
T TIGR02193 244 SLAEVAALLAGADA--VVGV-DTGLTHLAAALDKPTVTL--YG--ATDPGRTGG-YGKPNVALLGESGANPTPDEVLAAL 315 (319)
T ss_pred CHHHHHHHHHcCCE--EEeC-CChHHHHHHHcCCCEEEE--EC--CCCHhhccc-CCCCceEEccCccCCCCHHHHHHHH
Confidence 333 458899999 9986 456788889999999986 22 111111111 1221111111001238999999999
Q ss_pred HHHh
Q 017557 321 KAVM 324 (369)
Q Consensus 321 ~~ll 324 (369)
+++|
T Consensus 316 ~~~~ 319 (319)
T TIGR02193 316 EELL 319 (319)
T ss_pred HhhC
Confidence 8875
No 131
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=92.59 E-value=4.8 Score=40.01 Aligned_cols=104 Identities=13% Similarity=0.188 Sum_probs=67.0
Q ss_pred ecccChHH---hhcCCCccceee---cCCCc-hHHHHHHhCCc----ccccccccchhHHHHHHhhhcceEEEEeecCCC
Q 017557 240 GGWVQQQL---ILKHPSVGCFVT---HCGSG-SLSEAMVNECQ----LVLLPNVGDQIINSRLMGEDLKVGVEVERGDED 308 (369)
Q Consensus 240 ~~~~pq~~---lL~~~~~~~~It---HgG~~-s~~Eal~~GvP----~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~ 308 (369)
.+.+++.+ +++.+++ |+. +=|+| ++.||+++|+| +|+--..+- +.. . +.|+.++.
T Consensus 341 ~~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~----~~~---l-~~gllVnP---- 406 (456)
T TIGR02400 341 NRSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGA----AQE---L-NGALLVNP---- 406 (456)
T ss_pred cCCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCCC----hHH---h-CCcEEECC----
Confidence 34556654 5778888 775 33654 77799999999 555443331 111 2 35777766
Q ss_pred CccCHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 017557 309 GLFTRDGVCKAVKAVMDDDSEVGKDARQNHAELREFLISPGLENSYVDGFVQELH 363 (369)
Q Consensus 309 ~~~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~v~~l~ 363 (369)
.+.+.++++|.++++. . .+..+++.+++.+.+.+ -+...-++.+++.+.
T Consensus 407 --~d~~~lA~aI~~aL~~--~-~~er~~r~~~~~~~v~~-~~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 407 --YDIDGMADAIARALTM--P-LEEREERHRAMMDKLRK-NDVQRWREDFLSDLN 455 (456)
T ss_pred --CCHHHHHHHHHHHHcC--C-HHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHhh
Confidence 4789999999999972 1 34566777777777663 444555666666553
No 132
>PLN02316 synthase/transferase
Probab=91.68 E-value=6.9 Score=42.71 Aligned_cols=82 Identities=15% Similarity=0.093 Sum_probs=51.9
Q ss_pred CCeeEecccChH---HhhcCCCccceeecC---C-CchHHHHHHhCCccccccccc--chhHH-------HHHHhhhcce
Q 017557 235 RGFVHGGWVQQQ---LILKHPSVGCFVTHC---G-SGSLSEAMVNECQLVLLPNVG--DQIIN-------SRLMGEDLKV 298 (369)
Q Consensus 235 ~~~~v~~~~pq~---~lL~~~~~~~~ItHg---G-~~s~~Eal~~GvP~i~~P~~~--DQ~~n-------a~~v~~~~g~ 298 (369)
.++.+....+.. .+++.+++ |+.-+ | ..+.+||+++|+|.|+-...+ |.-.. +...... +.
T Consensus 900 ~rV~f~g~~de~lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~-~t 976 (1036)
T PLN02316 900 DRARLCLTYDEPLSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLE-PN 976 (1036)
T ss_pred CeEEEEecCCHHHHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccC-Cc
Confidence 356555444443 58888888 87432 2 358999999999888754422 22111 1111113 57
Q ss_pred EEEEeecCCCCccCHHHHHHHHHHHhc
Q 017557 299 GVEVERGDEDGLFTRDGVCKAVKAVMD 325 (369)
Q Consensus 299 G~~l~~~~~~~~~~~~~l~~ai~~ll~ 325 (369)
|+.++. -+++.|..+|.+++.
T Consensus 977 Gflf~~------~d~~aLa~AL~raL~ 997 (1036)
T PLN02316 977 GFSFDG------ADAAGVDYALNRAIS 997 (1036)
T ss_pred eEEeCC------CCHHHHHHHHHHHHh
Confidence 888876 478899999999986
No 133
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=90.37 E-value=0.71 Score=39.85 Aligned_cols=48 Identities=21% Similarity=0.124 Sum_probs=36.1
Q ss_pred CCCeeEecccCh---H-HhhcCCCccceeecCC----CchHHHHHHhCCccccccccc
Q 017557 234 GRGFVHGGWVQQ---Q-LILKHPSVGCFVTHCG----SGSLSEAMVNECQLVLLPNVG 283 (369)
Q Consensus 234 ~~~~~v~~~~pq---~-~lL~~~~~~~~ItHgG----~~s~~Eal~~GvP~i~~P~~~ 283 (369)
..|+.+.++++. . .+++.+++ +|+-.. .+++.||+++|+|+|+-+..+
T Consensus 160 ~~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~ 215 (229)
T cd01635 160 LDRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGG 215 (229)
T ss_pred cccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCC
Confidence 458888888632 2 24444777 777775 689999999999999988654
No 134
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=90.28 E-value=10 Score=35.61 Aligned_cols=169 Identities=13% Similarity=0.061 Sum_probs=85.6
Q ss_pred ccCceeeeccccchhhhhhhhhhhhcCcce-eEeCCCCCCCCCCCchhHHHhh---hccCCCCceEEEeeCC-Ccc--CC
Q 017557 117 TECDAIGFKTCREIEGAYCDCVESQFEKRV-ILAGPVLPEPPASVLEEEFEML---FSSFKAKSLIFCALGS-ECV--LK 189 (369)
Q Consensus 117 ~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~-~~vGp~~~~~~~~~~~~~~~~~---l~~~~~~~~v~vs~GS-~~~--~~ 189 (369)
...|++++..+..+. -.+|+ ...|+++.-.++. +.+.-.+| +... +++.+.|-.|. ... .+
T Consensus 96 ~~FDlvi~p~HD~~~----------~~~Nvl~t~ga~~~i~~~~-l~~a~~~~~~~~~~l-~~p~~avLIGG~s~~~~~~ 163 (311)
T PF06258_consen 96 RPFDLVIVPEHDRLP----------RGPNVLPTLGAPNRITPER-LAEAAAAWAPRLAAL-PRPRVAVLIGGDSKHYRWD 163 (311)
T ss_pred cccCEEEECcccCcC----------CCCceEecccCCCcCCHHH-HHHHHHhhhhhhccC-CCCeEEEEECcCCCCcccC
Confidence 345666766665331 12344 5678877654322 33333333 3332 24455544443 222 55
Q ss_pred HHHHHHHHHHH----HhcCCcEEEEECCCCCCCccccCCchhHHHHhc-CCCeeEec---ccChHHhhcCCCccceeecC
Q 017557 190 KDQFQELILGF----ELTGLPFFAALKPPTGHDTIESALPEGFEERVK-GRGFVHGG---WVQQQLILKHPSVGCFVTHC 261 (369)
Q Consensus 190 ~~~~~~~~~~l----~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~-~~~~~v~~---~~pq~~lL~~~~~~~~ItHg 261 (369)
.+....++..+ +..+..+.+.+.... ....-..+.+..+ ...+.+.+ .=|...+|+.++. ++.=+
T Consensus 164 ~~~~~~l~~~l~~~~~~~~~~~~vttSRRT-----p~~~~~~L~~~~~~~~~~~~~~~~~~nPy~~~La~ad~--i~VT~ 236 (311)
T PF06258_consen 164 EEDAERLLDQLAALAAAYGGSLLVTTSRRT-----PPEAEAALRELLKDNPGVYIWDGTGENPYLGFLAAADA--IVVTE 236 (311)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEcCCCC-----cHHHHHHHHHhhcCCCceEEecCCCCCcHHHHHHhCCE--EEEcC
Confidence 66444444443 344544544443221 1111112222221 23332322 2367789998887 55555
Q ss_pred C-CchHHHHHHhCCcccccccccchhHH---HHHHhhhcceEEEEeec
Q 017557 262 G-SGSLSEAMVNECQLVLLPNVGDQIIN---SRLMGEDLKVGVEVERG 305 (369)
Q Consensus 262 G-~~s~~Eal~~GvP~i~~P~~~DQ~~n---a~~v~~~~g~G~~l~~~ 305 (369)
. .+.+.||+..|+|+.++|+-.-.... .+.+++. |.-..+...
T Consensus 237 DSvSMvsEA~~tG~pV~v~~l~~~~~r~~r~~~~L~~~-g~~r~~~~~ 283 (311)
T PF06258_consen 237 DSVSMVSEAAATGKPVYVLPLPGRSGRFRRFHQSLEER-GAVRPFTGW 283 (311)
T ss_pred ccHHHHHHHHHcCCCEEEecCCCcchHHHHHHHHHHHC-CCEEECCCc
Confidence 5 57788999999999999987621222 2345555 666555543
No 135
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=90.27 E-value=4.3 Score=40.33 Aligned_cols=104 Identities=16% Similarity=0.213 Sum_probs=60.6
Q ss_pred EecccChHH---hhcCCCccceee---cCCC-chHHHHHHhCCc----ccccccccchhHHHHHHhhhcceEEEEeecCC
Q 017557 239 HGGWVQQQL---ILKHPSVGCFVT---HCGS-GSLSEAMVNECQ----LVLLPNVGDQIINSRLMGEDLKVGVEVERGDE 307 (369)
Q Consensus 239 v~~~~pq~~---lL~~~~~~~~It---HgG~-~s~~Eal~~GvP----~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~ 307 (369)
+.+++++.+ +++.+++ ||. +-|+ .++.||+++|+| +|+--..+- +.. . ..|+.++.
T Consensus 345 ~~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~----~~~---~-~~g~lv~p--- 411 (460)
T cd03788 345 LYRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGA----AEE---L-SGALLVNP--- 411 (460)
T ss_pred EeCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEeccccc----hhh---c-CCCEEECC---
Confidence 345667654 6888888 663 3454 467899999999 444322221 110 2 44677765
Q ss_pred CCccCHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 017557 308 DGLFTRDGVCKAVKAVMDDDSEVGKDARQNHAELREFLISPGLENSYVDGFVQEL 362 (369)
Q Consensus 308 ~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~v~~l 362 (369)
.+.+++.++|.+++++ . .+..+++.++..+.+. .-+...-++.++..+
T Consensus 412 ---~d~~~la~ai~~~l~~--~-~~e~~~~~~~~~~~v~-~~~~~~w~~~~l~~l 459 (460)
T cd03788 412 ---YDIDEVADAIHRALTM--P-LEERRERHRKLREYVR-THDVQAWANSFLDDL 459 (460)
T ss_pred ---CCHHHHHHHHHHHHcC--C-HHHHHHHHHHHHHHHH-hCCHHHHHHHHHHhh
Confidence 4689999999999973 1 1333444444444443 333344455555443
No 136
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=89.97 E-value=4.5 Score=43.19 Aligned_cols=99 Identities=13% Similarity=0.186 Sum_probs=61.7
Q ss_pred HhhcCCCccceeec---CCCc-hHHHHHHhCCc---ccccccccchhHHHHHHhhhcc-eEEEEeecCCCCccCHHHHHH
Q 017557 247 LILKHPSVGCFVTH---CGSG-SLSEAMVNECQ---LVLLPNVGDQIINSRLMGEDLK-VGVEVERGDEDGLFTRDGVCK 318 (369)
Q Consensus 247 ~lL~~~~~~~~ItH---gG~~-s~~Eal~~GvP---~i~~P~~~DQ~~na~~v~~~~g-~G~~l~~~~~~~~~~~~~l~~ 318 (369)
.+++.+++ |+.- =|+| ++.|++++|+| ++++.-+ -..+.. . | .|+.+.. .+.+.+++
T Consensus 371 aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~---~G~~~~---l-~~~allVnP------~D~~~lA~ 435 (797)
T PLN03063 371 ALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEF---AGAGQS---L-GAGALLVNP------WNITEVSS 435 (797)
T ss_pred HHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeCC---cCchhh---h-cCCeEEECC------CCHHHHHH
Confidence 57888888 7754 4776 66799999999 3444322 222221 2 4 5788877 57899999
Q ss_pred HHHHHhccCCcchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 017557 319 AVKAVMDDDSEVGKDARQNHAELREFLISPGLENSYVDGFVQELHS 364 (369)
Q Consensus 319 ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~v~~l~~ 364 (369)
+|.++|+- . .+.-+++.+++.+.+.+. ....-.+.|++.+.+
T Consensus 436 AI~~aL~m--~-~~er~~r~~~~~~~v~~~-~~~~Wa~~fl~~l~~ 477 (797)
T PLN03063 436 AIKEALNM--S-DEERETRHRHNFQYVKTH-SAQKWADDFMSELND 477 (797)
T ss_pred HHHHHHhC--C-HHHHHHHHHHHHHhhhhC-CHHHHHHHHHHHHHH
Confidence 99999972 1 344555566666665532 334445555555544
No 137
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=89.21 E-value=1 Score=45.53 Aligned_cols=73 Identities=8% Similarity=0.098 Sum_probs=55.7
Q ss_pred CCeeEecccC--h-HHhhcCCCccceeecC---CCchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecCCC
Q 017557 235 RGFVHGGWVQ--Q-QLILKHPSVGCFVTHC---GSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDED 308 (369)
Q Consensus 235 ~~~~v~~~~p--q-~~lL~~~~~~~~ItHg---G~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~ 308 (369)
..|.+.++.. + ...+.++.+ +|.=+ |.++.+||+.+|+|+| .......|++. .=|..+.
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d~-~NG~li~----- 473 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEHN-KNGYIID----- 473 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEcC-CCcEEeC-----
Confidence 4788888877 3 447888888 87755 6679999999999999 33345556666 6677772
Q ss_pred CccCHHHHHHHHHHHhc
Q 017557 309 GLFTRDGVCKAVKAVMD 325 (369)
Q Consensus 309 ~~~~~~~l~~ai~~ll~ 325 (369)
+..+|.++|..+|.
T Consensus 474 ---d~~~l~~al~~~L~ 487 (519)
T TIGR03713 474 ---DISELLKALDYYLD 487 (519)
T ss_pred ---CHHHHHHHHHHHHh
Confidence 56799999999998
No 138
>PLN02939 transferase, transferring glycosyl groups
Probab=88.94 E-value=13 Score=40.25 Aligned_cols=83 Identities=12% Similarity=0.084 Sum_probs=54.0
Q ss_pred CCCeeEecccChH---HhhcCCCccceeecC---C-CchHHHHHHhCCccccccccc--chhHH--HHHH-hhhcceEEE
Q 017557 234 GRGFVHGGWVQQQ---LILKHPSVGCFVTHC---G-SGSLSEAMVNECQLVLLPNVG--DQIIN--SRLM-GEDLKVGVE 301 (369)
Q Consensus 234 ~~~~~v~~~~pq~---~lL~~~~~~~~ItHg---G-~~s~~Eal~~GvP~i~~P~~~--DQ~~n--a~~v-~~~~g~G~~ 301 (369)
..+|.+.++.+.. .+++.+++ ||.-+ | ..+.+||+++|+|.|+....+ |--.+ ...+ +.- +.|+.
T Consensus 836 ~drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg-~NGfL 912 (977)
T PLN02939 836 NNNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVEL-RNGFT 912 (977)
T ss_pred CCeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCC-CceEE
Confidence 3468877887764 48888998 88532 2 347899999999998865533 22111 1111 223 56777
Q ss_pred EeecCCCCccCHHHHHHHHHHHhc
Q 017557 302 VERGDEDGLFTRDGVCKAVKAVMD 325 (369)
Q Consensus 302 l~~~~~~~~~~~~~l~~ai~~ll~ 325 (369)
+.. -+++.+.++|.+++.
T Consensus 913 f~~------~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 913 FLT------PDEQGLNSALERAFN 930 (977)
T ss_pred ecC------CCHHHHHHHHHHHHH
Confidence 765 367888888887763
No 139
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.34 E-value=1.7 Score=40.19 Aligned_cols=80 Identities=15% Similarity=0.121 Sum_probs=53.6
Q ss_pred hHHhhcCCCccceeecCCCchHHH-HHHhCCcccccccccchh--HHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHH
Q 017557 245 QQLILKHPSVGCFVTHCGSGSLSE-AMVNECQLVLLPNVGDQI--INSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVK 321 (369)
Q Consensus 245 q~~lL~~~~~~~~ItHgG~~s~~E-al~~GvP~i~~P~~~DQ~--~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~ 321 (369)
..++|.++++ .|--. ||..| ++=-|||+|.+|-.+-|+ ..|.+=.+.+|+.+.+...+ +..-..+.+
T Consensus 305 fadiLH~ada--algmA--GTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~~~------aq~a~~~~q 374 (412)
T COG4370 305 FADILHAADA--ALGMA--GTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVRPE------AQAAAQAVQ 374 (412)
T ss_pred HHHHHHHHHH--HHHhc--cchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecCCc------hhhHHHHHH
Confidence 3446666555 44333 44444 566899999999999885 46777777779998887643 333344455
Q ss_pred HHhccCCcchHHHHHHHH
Q 017557 322 AVMDDDSEVGKDARQNHA 339 (369)
Q Consensus 322 ~ll~~~~~~~~~~~~~a~ 339 (369)
+++. |+.+.+.++
T Consensus 375 ~ll~-----dp~r~~air 387 (412)
T COG4370 375 ELLG-----DPQRLTAIR 387 (412)
T ss_pred HHhc-----ChHHHHHHH
Confidence 5888 777777666
No 140
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=88.27 E-value=19 Score=32.46 Aligned_cols=79 Identities=18% Similarity=0.204 Sum_probs=51.6
Q ss_pred CCCeeEecccC---hHHhhcCCCccceeec---CCCc-hHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecC
Q 017557 234 GRGFVHGGWVQ---QQLILKHPSVGCFVTH---CGSG-SLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGD 306 (369)
Q Consensus 234 ~~~~~v~~~~p---q~~lL~~~~~~~~ItH---gG~~-s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~ 306 (369)
..++...++++ ...+++.+++ ++.- .|.+ ++.||+++|+|+|.-.. ......+.+. +.|. +...
T Consensus 256 ~~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~----~~~~e~~~~~-~~g~-~~~~- 326 (381)
T COG0438 256 EDNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASDV----GGIPEVVEDG-ETGL-LVPP- 326 (381)
T ss_pred CCcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECCC----CChHHHhcCC-CceE-ecCC-
Confidence 35788888888 2346777777 5555 3554 46999999999976653 2233333333 3476 3332
Q ss_pred CCCccCHHHHHHHHHHHhc
Q 017557 307 EDGLFTRDGVCKAVKAVMD 325 (369)
Q Consensus 307 ~~~~~~~~~l~~ai~~ll~ 325 (369)
...+.+..++..+++
T Consensus 327 ----~~~~~~~~~i~~~~~ 341 (381)
T COG0438 327 ----GDVEELADALEQLLE 341 (381)
T ss_pred ----CCHHHHHHHHHHHhc
Confidence 257899999999997
No 141
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=87.47 E-value=25 Score=32.87 Aligned_cols=42 Identities=33% Similarity=0.472 Sum_probs=34.6
Q ss_pred HHHHHHhhcCCCEEEECCCCChHHHHHHhCCCeEEEeCchHH
Q 017557 10 AIEAIVRDIKPNIVFFDFTYWLPSLARKLGIKSIAFVTVSPA 51 (369)
Q Consensus 10 ~l~~~l~~~~pD~vI~D~~~~~~~~A~~lgiP~v~~~~~~~~ 51 (369)
.|.+++.+.+||+.|.=.++-+..+|--+|+|.+.+.-..-+
T Consensus 75 ~L~ki~~~~kpdv~i~~~s~~l~rvafgLg~psIi~~D~ehA 116 (346)
T COG1817 75 KLSKIIAEFKPDVAIGKHSPELPRVAFGLGIPSIIFVDNEHA 116 (346)
T ss_pred HHHHHHhhcCCceEeecCCcchhhHHhhcCCceEEecCChhH
Confidence 566777888999999933888999999999999998865433
No 142
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=86.71 E-value=12 Score=32.79 Aligned_cols=153 Identities=10% Similarity=0.025 Sum_probs=84.0
Q ss_pred CceEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhcCCCeeEecccChHHhhcCCCc
Q 017557 175 KSLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGRGFVHGGWVQQQLILKHPSV 254 (369)
Q Consensus 175 ~~~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~ 254 (369)
+.++.|..|.++ ...++.|...+..+.++... +.+.+.+......+.......+..-+..+++
T Consensus 11 k~vLVIGgG~va-------~~ka~~Ll~~ga~V~VIs~~----------~~~~l~~l~~~~~i~~~~~~~~~~~l~~adl 73 (202)
T PRK06718 11 KRVVIVGGGKVA-------GRRAITLLKYGAHIVVISPE----------LTENLVKLVEEGKIRWKQKEFEPSDIVDAFL 73 (202)
T ss_pred CEEEEECCCHHH-------HHHHHHHHHCCCeEEEEcCC----------CCHHHHHHHhCCCEEEEecCCChhhcCCceE
Confidence 557777777776 45666666677776666321 1112222222234444444444556677777
Q ss_pred cceeecCCCchHHHHHHhCCccccccc-ccchhHHH-----HHHhhhcceEEEEeecCCCCccCHHHHHHHHHHHhccCC
Q 017557 255 GCFVTHCGSGSLSEAMVNECQLVLLPN-VGDQIINS-----RLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAVMDDDS 328 (369)
Q Consensus 255 ~~~ItHgG~~s~~Eal~~GvP~i~~P~-~~DQ~~na-----~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ll~~~~ 328 (369)
+|.--+--.+.+.++.-.-. .++. ..|.+..+ ..+.+- ++-+.+..+..++ .-+..|++.|++++.
T Consensus 74 --ViaaT~d~elN~~i~~~a~~-~~lvn~~d~~~~~~f~~Pa~~~~g-~l~iaIsT~G~sP-~la~~lr~~ie~~~~--- 145 (202)
T PRK06718 74 --VIAATNDPRVNEQVKEDLPE-NALFNVITDAESGNVVFPSALHRG-KLTISVSTDGASP-KLAKKIRDELEALYD--- 145 (202)
T ss_pred --EEEcCCCHHHHHHHHHHHHh-CCcEEECCCCccCeEEEeeEEEcC-CeEEEEECCCCCh-HHHHHHHHHHHHHcc---
Confidence 88877777777666532211 1222 23544333 233443 4445554432122 234567888877763
Q ss_pred cchHHHHHHHHHHHHHHhcCCCCH
Q 017557 329 EVGKDARQNHAELREFLISPGLEN 352 (369)
Q Consensus 329 ~~~~~~~~~a~~l~~~~~~~~~~~ 352 (369)
+....+-+.+.++++.+++.....
T Consensus 146 ~~~~~~~~~~~~~R~~~k~~~~~~ 169 (202)
T PRK06718 146 ESYESYIDFLYECRQKIKELQIEK 169 (202)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCCH
Confidence 225678888888888888654433
No 143
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=86.54 E-value=17 Score=31.84 Aligned_cols=149 Identities=10% Similarity=0.065 Sum_probs=80.0
Q ss_pred CceEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhcCCCeeEecccChHHhhcCCCc
Q 017557 175 KSLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGRGFVHGGWVQQQLILKHPSV 254 (369)
Q Consensus 175 ~~~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~ 254 (369)
+.++.|..|..+ ..-++.|...+..+.++.... -+.+.+.....++....--.+...+..+.+
T Consensus 10 k~vlVvGgG~va-------~rk~~~Ll~~ga~VtVvsp~~----------~~~l~~l~~~~~i~~~~~~~~~~dl~~~~l 72 (205)
T TIGR01470 10 RAVLVVGGGDVA-------LRKARLLLKAGAQLRVIAEEL----------ESELTLLAEQGGITWLARCFDADILEGAFL 72 (205)
T ss_pred CeEEEECcCHHH-------HHHHHHHHHCCCEEEEEcCCC----------CHHHHHHHHcCCEEEEeCCCCHHHhCCcEE
Confidence 457777766665 444556666788777664321 123322222235544322223445677777
Q ss_pred cceeecCCCchHHHHHH-----hCCcc--cccccccchhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHHHhccC
Q 017557 255 GCFVTHCGSGSLSEAMV-----NECQL--VLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAVMDDD 327 (369)
Q Consensus 255 ~~~ItHgG~~s~~Eal~-----~GvP~--i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ll~~~ 327 (369)
+|..-|...+.+.++ .|+|+ +.-|-..| +..-..+.+- ++-+.+..+..++ .-+..+++.|++++.
T Consensus 73 --Vi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~-f~~pa~~~~g-~l~iaisT~G~sP-~la~~lr~~ie~~l~-- 145 (205)
T TIGR01470 73 --VIAATDDEELNRRVAHAARARGVPVNVVDDPELCS-FIFPSIVDRS-PVVVAISSGGAAP-VLARLLRERIETLLP-- 145 (205)
T ss_pred --EEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCe-EEEeeEEEcC-CEEEEEECCCCCc-HHHHHHHHHHHHhcc--
Confidence 888888765555444 56776 33333222 2222233333 4444444432122 234668888888884
Q ss_pred CcchHHHHHHHHHHHHHHhcC
Q 017557 328 SEVGKDARQNHAELREFLISP 348 (369)
Q Consensus 328 ~~~~~~~~~~a~~l~~~~~~~ 348 (369)
+....+-+.+.++++.+++.
T Consensus 146 -~~~~~~~~~~~~~R~~~k~~ 165 (205)
T TIGR01470 146 -PSLGDLATLAATWRDAVKKR 165 (205)
T ss_pred -hhHHHHHHHHHHHHHHHHhh
Confidence 12466777788888877754
No 144
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=86.47 E-value=5.8 Score=37.52 Aligned_cols=137 Identities=12% Similarity=0.109 Sum_probs=86.8
Q ss_pred CceEEEeeCCCccCCHHHHHHHHHHHH---hcCCcEEEEECCCCCCCccccCCchhHHH---Hh-cCCCee-EecccCh-
Q 017557 175 KSLIFCALGSECVLKKDQFQELILGFE---LTGLPFFAALKPPTGHDTIESALPEGFEE---RV-KGRGFV-HGGWVQQ- 245 (369)
Q Consensus 175 ~~~v~vs~GS~~~~~~~~~~~~~~~l~---~~~~~~i~~~~~~~~~~~~~~~lp~~~~~---~~-~~~~~~-v~~~~pq- 245 (369)
+..+.|-.|..+..+..+++.+ +++. ..+.++++-.+-+... ...-+.+.+ +. ...++. +.+++|-
T Consensus 183 ~~~ltILvGNSgd~sNnHieaL-~~L~~~~~~~~kIivPLsYg~~n----~~Yi~~V~~~~~~lF~~~~~~iL~e~mpf~ 257 (360)
T PF07429_consen 183 KGKLTILVGNSGDPSNNHIEAL-EALKQQFGDDVKIIVPLSYGANN----QAYIQQVIQAGKELFGAENFQILTEFMPFD 257 (360)
T ss_pred CCceEEEEcCCCCCCccHHHHH-HHHHHhcCCCeEEEEECCCCCch----HHHHHHHHHHHHHhcCccceeEhhhhCCHH
Confidence 3466677788887666554432 2332 2456777766554210 011111211 11 234665 4568875
Q ss_pred --HHhhcCCCccceeec--CCCchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHH
Q 017557 246 --QLILKHPSVGCFVTH--CGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVK 321 (369)
Q Consensus 246 --~~lL~~~~~~~~ItH--gG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~ 321 (369)
..+|+.+++++|.+. =|.|++.-.++.|+|+..-- +-.--..+.+. |+-+.-..++ ++...++++=+
T Consensus 258 eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~~----~np~~~~l~~~-~ipVlf~~d~----L~~~~v~ea~r 328 (360)
T PF07429_consen 258 EYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLSR----DNPFWQDLKEQ-GIPVLFYGDE----LDEALVREAQR 328 (360)
T ss_pred HHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEec----CChHHHHHHhC-CCeEEecccc----CCHHHHHHHHH
Confidence 459999999888875 58999999999999987642 22233455666 7777766665 99999999998
Q ss_pred HHhc
Q 017557 322 AVMD 325 (369)
Q Consensus 322 ~ll~ 325 (369)
++..
T Consensus 329 ql~~ 332 (360)
T PF07429_consen 329 QLAN 332 (360)
T ss_pred HHhh
Confidence 8875
No 145
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=86.05 E-value=2.5 Score=38.77 Aligned_cols=96 Identities=18% Similarity=0.192 Sum_probs=59.8
Q ss_pred CceEEEeeCCCcc---CCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhcCCC-eeEeccc--C-hHH
Q 017557 175 KSLIFCALGSECV---LKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGRG-FVHGGWV--Q-QQL 247 (369)
Q Consensus 175 ~~~v~vs~GS~~~---~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~-~~v~~~~--p-q~~ 247 (369)
++.|.+..|+... .+.+.+.++++.|...++++++..++.+ ...-+.+.+.....+ +.+.+-. . ...
T Consensus 121 ~~~i~i~~~~~~~~k~w~~~~~~~l~~~l~~~~~~ivl~g~~~e------~~~~~~i~~~~~~~~~~~~~~~~~l~e~~~ 194 (279)
T cd03789 121 KPVVVLPPGASGPAKRWPAERFAALADRLLARGARVVLTGGPAE------RELAEEIAAALGGPRVVNLAGKTSLRELAA 194 (279)
T ss_pred CCEEEECCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEechhh------HHHHHHHHHhcCCCccccCcCCCCHHHHHH
Confidence 4577777777643 6678899999999876888887654321 111112222211112 2222221 2 355
Q ss_pred hhcCCCccceeecCCCchHHHHHHhCCccccc
Q 017557 248 ILKHPSVGCFVTHCGSGSLSEAMVNECQLVLL 279 (369)
Q Consensus 248 lL~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~ 279 (369)
+++++++ +|+.-. |.++=|.+.|+|+|++
T Consensus 195 li~~~~l--~I~~Ds-g~~HlA~a~~~p~i~l 223 (279)
T cd03789 195 LLARADL--VVTNDS-GPMHLAAALGTPTVAL 223 (279)
T ss_pred HHHhCCE--EEeeCC-HHHHHHHHcCCCEEEE
Confidence 8889999 999854 6677778999999887
No 146
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=84.33 E-value=4.9 Score=38.12 Aligned_cols=99 Identities=19% Similarity=0.242 Sum_probs=62.1
Q ss_pred CCceEEEeeCCCcc---CCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhcCCCee-Eeccc--Ch-H
Q 017557 174 AKSLIFCALGSECV---LKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGRGFV-HGGWV--QQ-Q 246 (369)
Q Consensus 174 ~~~~v~vs~GS~~~---~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~-v~~~~--pq-~ 246 (369)
+++.|.+..|+... ++.+.+.++++.|...++++++..++... ...+.+.+.+.....+++ +.+-. .+ .
T Consensus 180 ~~~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~~~~ivl~g~p~~~----e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ 255 (344)
T TIGR02201 180 GQNYIVIQPTSRWFFKCWDNDRFSALIDALHARGYEVVLTSGPDKD----ELAMVNEIAQGCQTPRVTSLAGKLTLPQLA 255 (344)
T ss_pred CCCEEEEeCCCCccccCCCHHHHHHHHHHHHhCCCeEEEecCCCHH----HHHHHHHHHhhCCCCcccccCCCCCHHHHH
Confidence 35577777777544 56788999999987778887776443210 001111222221112221 23332 23 4
Q ss_pred HhhcCCCccceeecCCCchHHHHHHhCCccccc
Q 017557 247 LILKHPSVGCFVTHCGSGSLSEAMVNECQLVLL 279 (369)
Q Consensus 247 ~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~ 279 (369)
.+++++++ ||+. -.|.++=|.+.|+|+|++
T Consensus 256 ali~~a~l--~Vs~-DSGp~HlAaA~g~p~v~L 285 (344)
T TIGR02201 256 ALIDHARL--FIGV-DSVPMHMAAALGTPLVAL 285 (344)
T ss_pred HHHHhCCE--EEec-CCHHHHHHHHcCCCEEEE
Confidence 58899999 9998 678889999999999986
No 147
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=83.49 E-value=20 Score=29.72 Aligned_cols=140 Identities=14% Similarity=0.129 Sum_probs=71.7
Q ss_pred eEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhcCCCeeEecccChHHhhcCCCccc
Q 017557 177 LIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGRGFVHGGWVQQQLILKHPSVGC 256 (369)
Q Consensus 177 ~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~ 256 (369)
.|-|-+||.. +....+++...|+..+.++-+.+-+ .+..|+.+.+.. .-+.+-.+++
T Consensus 2 ~V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~s-------aHR~p~~l~~~~--------------~~~~~~~~~v 58 (150)
T PF00731_consen 2 KVAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVAS-------AHRTPERLLEFV--------------KEYEARGADV 58 (150)
T ss_dssp EEEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE---------TTTSHHHHHHHH--------------HHTTTTTESE
T ss_pred eEEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEe-------ccCCHHHHHHHH--------------HHhccCCCEE
Confidence 4666677776 5677888888888888776655543 344555443221 1112222334
Q ss_pred eeecCCCchHHHHH---HhCCcccccccccchhHHH----HHHhhhcceEEEEeecCCCCccCHHHHHHHHHHHhccCCc
Q 017557 257 FVTHCGSGSLSEAM---VNECQLVLLPNVGDQIINS----RLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAVMDDDSE 329 (369)
Q Consensus 257 ~ItHgG~~s~~Eal---~~GvP~i~~P~~~DQ~~na----~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ll~~~~~ 329 (369)
||.=.|...-.-.+ ..-.|+|++|....+.... ..++---|+++..-.- ++..++..+...|-.+ .
T Consensus 59 iIa~AG~~a~Lpgvva~~t~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i--~~~~nAA~~A~~ILa~-~---- 131 (150)
T PF00731_consen 59 IIAVAGMSAALPGVVASLTTLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGI--NNGFNAALLAARILAL-K---- 131 (150)
T ss_dssp EEEEEESS--HHHHHHHHSSS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SS--THHHHHHHHHHHHHHT-T----
T ss_pred EEEECCCcccchhhheeccCCCEEEeecCcccccCcccHHHHHhccCCCCceEEEc--cCchHHHHHHHHHHhc-C----
Confidence 99888876444332 2478999999876643222 2222211555433221 0113444444444222 3
Q ss_pred chHHHHHHHHHHHHHHhc
Q 017557 330 VGKDARQNHAELREFLIS 347 (369)
Q Consensus 330 ~~~~~~~~a~~l~~~~~~ 347 (369)
++.++++.+..++.+++
T Consensus 132 -d~~l~~kl~~~~~~~~~ 148 (150)
T PF00731_consen 132 -DPELREKLRAYREKMKE 148 (150)
T ss_dssp --HHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHc
Confidence 68888888888887763
No 148
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=82.45 E-value=9.4 Score=37.70 Aligned_cols=93 Identities=10% Similarity=0.085 Sum_probs=62.6
Q ss_pred CCeeEe-cccC-h-HHhhcCCCccceeecCCC--chHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecCCCC
Q 017557 235 RGFVHG-GWVQ-Q-QLILKHPSVGCFVTHCGS--GSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDG 309 (369)
Q Consensus 235 ~~~~v~-~~~p-q-~~lL~~~~~~~~ItHgG~--~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~ 309 (369)
.|+++. ++.+ . .+++..+++-+-|+||+. .++.||+.+|+|+++.=...... ..+.. |..+..+
T Consensus 328 ~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~~---~~i~~----g~l~~~~---- 396 (438)
T TIGR02919 328 DNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHNR---DFIAS----ENIFEHN---- 396 (438)
T ss_pred CCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccCCc---ccccC----CceecCC----
Confidence 466544 4566 3 469999999888999874 78999999999999875432221 11111 4444443
Q ss_pred ccCHHHHHHHHHHHhccCCcchH-HHHHHHHHHHHHH
Q 017557 310 LFTRDGVCKAVKAVMDDDSEVGK-DARQNHAELREFL 345 (369)
Q Consensus 310 ~~~~~~l~~ai~~ll~~~~~~~~-~~~~~a~~l~~~~ 345 (369)
+.+.+.++|.++|. ++ .++++..+-++.+
T Consensus 397 --~~~~m~~~i~~lL~-----d~~~~~~~~~~q~~~a 426 (438)
T TIGR02919 397 --EVDQLISKLKDLLN-----DPNQFRELLEQQREHA 426 (438)
T ss_pred --CHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHh
Confidence 67999999999998 45 5555555444443
No 149
>PRK14099 glycogen synthase; Provisional
Probab=82.34 E-value=23 Score=35.49 Aligned_cols=79 Identities=14% Similarity=0.174 Sum_probs=44.7
Q ss_pred eEecccChHH-hh-cCCCccceee---cCCC-chHHHHHHhCCccccccccc--chhHHHH-H--HhhhcceEEEEeecC
Q 017557 238 VHGGWVQQQL-IL-KHPSVGCFVT---HCGS-GSLSEAMVNECQLVLLPNVG--DQIINSR-L--MGEDLKVGVEVERGD 306 (369)
Q Consensus 238 ~v~~~~pq~~-lL-~~~~~~~~It---HgG~-~s~~Eal~~GvP~i~~P~~~--DQ~~na~-~--v~~~~g~G~~l~~~~ 306 (369)
.+.+|-.... ++ +.+++ |+. +=|. .+.+||+++|+|.|+-...+ |--.+.. . .... +.|+.++.
T Consensus 354 ~~~G~~~~l~~~~~a~aDi--fv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~-~~G~l~~~-- 428 (485)
T PRK14099 354 VVIGYDEALAHLIQAGADA--LLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGV-ATGVQFSP-- 428 (485)
T ss_pred EEeCCCHHHHHHHHhcCCE--EEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCC-CceEEeCC--
Confidence 4556633322 33 45777 774 2333 47789999997666654321 2211110 0 1112 46888876
Q ss_pred CCCccCHHHHHHHHHH---Hhc
Q 017557 307 EDGLFTRDGVCKAVKA---VMD 325 (369)
Q Consensus 307 ~~~~~~~~~l~~ai~~---ll~ 325 (369)
-+++++.++|.+ +++
T Consensus 429 ----~d~~~La~ai~~a~~l~~ 446 (485)
T PRK14099 429 ----VTADALAAALRKTAALFA 446 (485)
T ss_pred ----CCHHHHHHHHHHHHHHhc
Confidence 368899999987 555
No 150
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=81.51 E-value=11 Score=34.31 Aligned_cols=82 Identities=13% Similarity=0.127 Sum_probs=49.6
Q ss_pred HHHHHHHHH-Hh-cCCcEEEEECCCCCCCccccCCchhH-HHHhcCC-CeeEecccChHHhhcCCCccceeecCCCchHH
Q 017557 192 QFQELILGF-EL-TGLPFFAALKPPTGHDTIESALPEGF-EERVKGR-GFVHGGWVQQQLILKHPSVGCFVTHCGSGSLS 267 (369)
Q Consensus 192 ~~~~~~~~l-~~-~~~~~i~~~~~~~~~~~~~~~lp~~~-~~~~~~~-~~~v~~~~pq~~lL~~~~~~~~ItHgG~~s~~ 267 (369)
.+..++..+ +. ++..+++...+... .....++ .+..... .+.+..-.+-.+++.+++. +||-.+ +.-.
T Consensus 141 ~~~~~l~~~~~~~p~~~lvvK~HP~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~s~~--VvtinS-tvGl 212 (269)
T PF05159_consen 141 DFLDMLESFAKENPDAKLVVKPHPDER-----GGNKYSYLEELPNLPNVVIIDDDVNLYELLEQSDA--VVTINS-TVGL 212 (269)
T ss_pred HHHHHHHHHHHHCCCCEEEEEECchhh-----CCCChhHhhhhhcCCCeEEECCCCCHHHHHHhCCE--EEEECC-HHHH
Confidence 344444443 33 36777777665311 1111122 2222222 3445566788899999999 888765 4678
Q ss_pred HHHHhCCccccccc
Q 017557 268 EAMVNECQLVLLPN 281 (369)
Q Consensus 268 Eal~~GvP~i~~P~ 281 (369)
||+.+|+|++++..
T Consensus 213 EAll~gkpVi~~G~ 226 (269)
T PF05159_consen 213 EALLHGKPVIVFGR 226 (269)
T ss_pred HHHHcCCceEEecC
Confidence 99999999999754
No 151
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=80.00 E-value=9.7 Score=36.26 Aligned_cols=98 Identities=13% Similarity=0.185 Sum_probs=61.1
Q ss_pred CceEEEeeCCCcc---CCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhcCCC-eeEeccc--Ch-HH
Q 017557 175 KSLIFCALGSECV---LKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGRG-FVHGGWV--QQ-QL 247 (369)
Q Consensus 175 ~~~v~vs~GS~~~---~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~-~~v~~~~--pq-~~ 247 (369)
++.|.+.-|+... ++.+.+.++++.|...++++++..++...+ ...-+.+.+.....+ +-+.+-. .+ ..
T Consensus 183 ~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vvl~ggp~e~e----~~~~~~i~~~~~~~~~~~l~g~~sL~el~a 258 (352)
T PRK10422 183 QNYVVIQPTARQIFKCWDNDKFSAVIDALQARGYEVVLTSGPDKDD----LACVNEIAQGCQTPPVTALAGKTTFPELGA 258 (352)
T ss_pred CCeEEEecCCCccccCCCHHHHHHHHHHHHHCCCeEEEEcCCChHH----HHHHHHHHHhcCCCccccccCCCCHHHHHH
Confidence 4577788887643 667899999999987788877765543110 000111211111112 2233332 23 45
Q ss_pred hhcCCCccceeecCCCchHHHHHHhCCccccc
Q 017557 248 ILKHPSVGCFVTHCGSGSLSEAMVNECQLVLL 279 (369)
Q Consensus 248 lL~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~ 279 (369)
+++++++ ||+.= .|-++=|.+.|+|+|++
T Consensus 259 li~~a~l--~v~nD-SGp~HlAaA~g~P~v~l 287 (352)
T PRK10422 259 LIDHAQL--FIGVD-SAPAHIAAAVNTPLICL 287 (352)
T ss_pred HHHhCCE--EEecC-CHHHHHHHHcCCCEEEE
Confidence 8899999 99974 56788889999999876
No 152
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=79.22 E-value=3.9 Score=36.57 Aligned_cols=99 Identities=14% Similarity=0.170 Sum_probs=53.2
Q ss_pred CCceEEEeeCCCcc---CCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhcCCCeeEecccC--h-HH
Q 017557 174 AKSLIFCALGSECV---LKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGRGFVHGGWVQ--Q-QL 247 (369)
Q Consensus 174 ~~~~v~vs~GS~~~---~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~p--q-~~ 247 (369)
+++.|.+..|+... .+.+.+.++++.|.+.++++++..+.... ....-+.+.+......+.+.+-.+ + ..
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~e~~a 179 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQ----EKEIADQIAAGLQNPVINLAGKTSLRELAA 179 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHH----HHHHHHHHHTTHTTTTEEETTTS-HHHHHH
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHH----HHHHHHHHHHhcccceEeecCCCCHHHHHH
Confidence 45577777777654 56788999999998777676666544310 000000111111111333433332 2 45
Q ss_pred hhcCCCccceeecCCCchHHHHHHhCCccccc
Q 017557 248 ILKHPSVGCFVTHCGSGSLSEAMVNECQLVLL 279 (369)
Q Consensus 248 lL~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~ 279 (369)
+++++++ +|+.- .|.++=|.+.|+|+|++
T Consensus 180 li~~a~~--~I~~D-tg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 180 LISRADL--VIGND-TGPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHTSSE--EEEES-SHHHHHHHHTT--EEEE
T ss_pred HHhcCCE--EEecC-ChHHHHHHHHhCCEEEE
Confidence 8889998 99864 56788899999999998
No 153
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=78.27 E-value=12 Score=35.25 Aligned_cols=96 Identities=17% Similarity=0.156 Sum_probs=59.4
Q ss_pred CCceEEEeeCCCc-c---CCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhcCCCee-Eecc--cCh-
Q 017557 174 AKSLIFCALGSEC-V---LKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGRGFV-HGGW--VQQ- 245 (369)
Q Consensus 174 ~~~~v~vs~GS~~-~---~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~-v~~~--~pq- 245 (369)
+++.|.+.-|+.. . ++.+.+.++++.+...+.++++.-++.+ ...-+.+.+... .++. +.+- +.+
T Consensus 173 ~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e------~~~~~~i~~~~~-~~~~~l~g~~sL~el 245 (334)
T TIGR02195 173 ERPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKD------HPAGNEIEALLP-GELRNLAGETSLDEA 245 (334)
T ss_pred CCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhh------HHHHHHHHHhCC-cccccCCCCCCHHHH
Confidence 4568888887742 2 6678899999998766777766543321 111112222211 1221 2232 223
Q ss_pred HHhhcCCCccceeecCCCchHHHHHHhCCccccc
Q 017557 246 QLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLL 279 (369)
Q Consensus 246 ~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~ 279 (369)
..+++++++ ||+. -.|-++=|.+.|+|+|++
T Consensus 246 ~ali~~a~l--~I~~-DSGp~HlAaA~~~P~i~l 276 (334)
T TIGR02195 246 VDLIALAKA--VVTN-DSGLMHVAAALNRPLVAL 276 (334)
T ss_pred HHHHHhCCE--EEee-CCHHHHHHHHcCCCEEEE
Confidence 458899998 9986 356788899999999875
No 154
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=78.22 E-value=13 Score=34.78 Aligned_cols=134 Identities=15% Similarity=0.181 Sum_probs=78.6
Q ss_pred eEEEeeCCCccCCHHHHHHHHHHH-H--hcCCcEEEEECCCCCCCccccCCchhHHH---HhcC-CCee-EecccC---h
Q 017557 177 LIFCALGSECVLKKDQFQELILGF-E--LTGLPFFAALKPPTGHDTIESALPEGFEE---RVKG-RGFV-HGGWVQ---Q 245 (369)
Q Consensus 177 ~v~vs~GS~~~~~~~~~~~~~~~l-~--~~~~~~i~~~~~~~~~~~~~~~lp~~~~~---~~~~-~~~~-v~~~~p---q 245 (369)
.+-|-.|..+..+..+++. ++++ + ..+.++++-.+-+... ...-+.+.+ +.-+ .++. +..++| .
T Consensus 146 ~~tIlvGNSgd~SN~Hie~-L~~l~~~~~~~v~ii~PlsYp~gn----~~Yi~~V~~~~~~lF~~~~~~~L~e~l~f~eY 220 (322)
T PRK02797 146 KMTILVGNSGDRSNRHIEA-LRALHQQFGDNVKIIVPMGYPANN----QAYIEEVRQAGLALFGAENFQILTEKLPFDDY 220 (322)
T ss_pred ceEEEEeCCCCCcccHHHH-HHHHHHHhCCCeEEEEECCcCCCC----HHHHHHHHHHHHHhcCcccEEehhhhCCHHHH
Confidence 4555667777666555443 3333 2 3455677766553111 111111111 1112 3554 445666 4
Q ss_pred HHhhcCCCccceeec--CCCchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHHH
Q 017557 246 QLILKHPSVGCFVTH--CGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAV 323 (369)
Q Consensus 246 ~~lL~~~~~~~~ItH--gG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~l 323 (369)
.++|+.++++.|+++ =|.||++-.++.|||++.--. -+.+.. +.+. |+-+..+.+. ++...+.++=+++
T Consensus 221 l~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r~---n~fwqd-l~e~-gv~Vlf~~d~----L~~~~v~e~~rql 291 (322)
T PRK02797 221 LALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSRD---NPFWQD-LTEQ-GLPVLFTGDD----LDEDIVREAQRQL 291 (322)
T ss_pred HHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEecC---CchHHH-HHhC-CCeEEecCCc----ccHHHHHHHHHHH
Confidence 569999999999987 478999999999999987632 222222 3344 7776656655 7887777765554
Q ss_pred h
Q 017557 324 M 324 (369)
Q Consensus 324 l 324 (369)
.
T Consensus 292 ~ 292 (322)
T PRK02797 292 A 292 (322)
T ss_pred H
Confidence 4
No 155
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=77.23 E-value=45 Score=33.49 Aligned_cols=111 Identities=12% Similarity=0.058 Sum_probs=70.2
Q ss_pred eeEecccChHH---hhcCCCccceee---cCCCchHH-HHHHhCC----cccccccccchhHHHHHHhhhcceEEEEeec
Q 017557 237 FVHGGWVQQQL---ILKHPSVGCFVT---HCGSGSLS-EAMVNEC----QLVLLPNVGDQIINSRLMGEDLKVGVEVERG 305 (369)
Q Consensus 237 ~~v~~~~pq~~---lL~~~~~~~~It---HgG~~s~~-Eal~~Gv----P~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~ 305 (369)
+++.+.+|..+ +++.+++ ++. .-|+|-+. |.++++. |+|.--+.+ |. +.. .-++.+..
T Consensus 364 ~~~~~~v~~~el~alYr~ADV--~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaG-----aa--~~l-~~AllVNP- 432 (487)
T TIGR02398 364 QFFTRSLPYEEVSAWFAMADV--MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAG-----AA--VEL-KGALLTNP- 432 (487)
T ss_pred EEEcCCCCHHHHHHHHHhCCE--EEECccccccCcchhhHHhhhcCCCCCEEEecccc-----ch--hhc-CCCEEECC-
Confidence 45667778765 6667787 554 34888555 9999877 444333221 11 333 55777876
Q ss_pred CCCCccCHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhccc
Q 017557 306 DEDGLFTRDGVCKAVKAVMDDDSEVGKDARQNHAELREFLISPGLENSYVDGFVQELHSLAD 367 (369)
Q Consensus 306 ~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~v~~l~~~~~ 367 (369)
.+.+.++++|.+.|+- . .++-+++.+++.+.++.. ....=.+.|++.+....+
T Consensus 433 -----~d~~~~A~ai~~AL~m--~-~~Er~~R~~~l~~~v~~~-d~~~W~~~fl~~l~~~~~ 485 (487)
T TIGR02398 433 -----YDPVRMDETIYVALAM--P-KAEQQARMREMFDAVNYY-DVQRWADEFLAAVSPQAQ 485 (487)
T ss_pred -----CCHHHHHHHHHHHHcC--C-HHHHHHHHHHHHHHHhhC-CHHHHHHHHHHHhhhccc
Confidence 5789999999999972 1 234566777777766632 334446777777765544
No 156
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=76.21 E-value=11 Score=37.43 Aligned_cols=66 Identities=14% Similarity=0.107 Sum_probs=45.0
Q ss_pred cCCCchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHHHhccCCcchHHHHHHHH
Q 017557 260 HCGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAVMDDDSEVGKDARQNHA 339 (369)
Q Consensus 260 HgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~a~ 339 (369)
|-|. ++.||+++|+|+++.= +..=+.-++.. -.|..++.++ -....+.+++.++.+ ++.++.++.
T Consensus 377 ~FGi-v~IEAMa~glPvvAt~----~GGP~EiV~~~-~tG~l~dp~~----e~~~~~a~~~~kl~~-----~p~l~~~~~ 441 (495)
T KOG0853|consen 377 HFGI-VPIEAMACGLPVVATN----NGGPAEIVVHG-VTGLLIDPGQ----EAVAELADALLKLRR-----DPELWARMG 441 (495)
T ss_pred Cccc-eeHHHHhcCCCEEEec----CCCceEEEEcC-CcceeeCCch----HHHHHHHHHHHHHhc-----CHHHHHHHH
Confidence 4443 7899999999999863 33334445555 6677776643 333479999999998 777776665
Q ss_pred H
Q 017557 340 E 340 (369)
Q Consensus 340 ~ 340 (369)
+
T Consensus 442 ~ 442 (495)
T KOG0853|consen 442 K 442 (495)
T ss_pred H
Confidence 4
No 157
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=75.90 E-value=42 Score=29.86 Aligned_cols=149 Identities=9% Similarity=-0.018 Sum_probs=79.1
Q ss_pred CceEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhcCCCeeEecccChHHhhcCCCc
Q 017557 175 KSLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGRGFVHGGWVQQQLILKHPSV 254 (369)
Q Consensus 175 ~~~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~ 254 (369)
+.++.|..|..+ ..=+..|...+..+.++...- -+.+.+.....++....--.+..-|..+.+
T Consensus 26 ~~VLVVGGG~VA-------~RK~~~Ll~~gA~VtVVap~i----------~~el~~l~~~~~i~~~~r~~~~~dl~g~~L 88 (223)
T PRK05562 26 IKVLIIGGGKAA-------FIKGKTFLKKGCYVYILSKKF----------SKEFLDLKKYGNLKLIKGNYDKEFIKDKHL 88 (223)
T ss_pred CEEEEECCCHHH-------HHHHHHHHhCCCEEEEEcCCC----------CHHHHHHHhCCCEEEEeCCCChHHhCCCcE
Confidence 457777666665 223344555788877775331 123333223334443332223344566666
Q ss_pred cceeecCCCchHHHHHHhCCccccccc-ccchhHHH-----HHHhhhcceEEEEeecCCCCccCHHHHHHHHHHHhccCC
Q 017557 255 GCFVTHCGSGSLSEAMVNECQLVLLPN-VGDQIINS-----RLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAVMDDDS 328 (369)
Q Consensus 255 ~~~ItHgG~~s~~Eal~~GvP~i~~P~-~~DQ~~na-----~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ll~~~~ 328 (369)
+|.--+-..+.+.++.-..--.++. ..|++..+ ..+.+- ++-+.+..+..++.+ +..|++.|++++.+
T Consensus 89 --ViaATdD~~vN~~I~~~a~~~~~lvn~vd~p~~~dFi~PAiv~rg-~l~IaIST~G~sP~l-ar~lR~~ie~~l~~-- 162 (223)
T PRK05562 89 --IVIATDDEKLNNKIRKHCDRLYKLYIDCSDYKKGLCIIPYQRSTK-NFVFALNTKGGSPKT-SVFIGEKVKNFLKK-- 162 (223)
T ss_pred --EEECCCCHHHHHHHHHHHHHcCCeEEEcCCcccCeEEeeeEEecC-CEEEEEECCCcCcHH-HHHHHHHHHHHHHH--
Confidence 8887777777776654322222222 23444333 223333 444445443223333 35688888888852
Q ss_pred cchHHHHHHHHHHHHHHhcC
Q 017557 329 EVGKDARQNHAELREFLISP 348 (369)
Q Consensus 329 ~~~~~~~~~a~~l~~~~~~~ 348 (369)
...+-+.+.++++.+++.
T Consensus 163 --~~~l~~~l~~~R~~vk~~ 180 (223)
T PRK05562 163 --YDDFIEYVTKIRNKAKKN 180 (223)
T ss_pred --HHHHHHHHHHHHHHHHhh
Confidence 456788888888887764
No 158
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=74.61 E-value=7.5 Score=36.46 Aligned_cols=132 Identities=12% Similarity=0.053 Sum_probs=73.8
Q ss_pred CceEEEeeC-CCcc--CCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhcCCCeeEecc--cCh-HHh
Q 017557 175 KSLIFCALG-SECV--LKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGRGFVHGGW--VQQ-QLI 248 (369)
Q Consensus 175 ~~~v~vs~G-S~~~--~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~--~pq-~~l 248 (369)
++.|.+..| |... ++.+.+.++++.+...++++++..|...+ ....+.+.+. ..++.+.+- +.+ ..+
T Consensus 178 ~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~~e-----~~~~~~i~~~--~~~~~l~g~~sL~elaal 250 (322)
T PRK10964 178 GPYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAEHE-----EQRAKRLAEG--FPYVEVLPKLSLEQVARV 250 (322)
T ss_pred CCeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCHHH-----HHHHHHHHcc--CCcceecCCCCHHHHHHH
Confidence 345544444 4332 67889999999997778887765454311 1111111111 112333332 233 458
Q ss_pred hcCCCccceeecCCCchHHHHHHhCCcccccccccchhH------HHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHH
Q 017557 249 LKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQII------NSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKA 322 (369)
Q Consensus 249 L~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~P~~~DQ~~------na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ 322 (369)
++++++ ||+.- -|.++=|.+.|+|+|++=-..+... |...+. .++-+ ..+ ++++.+.+++++
T Consensus 251 i~~a~l--~I~nD-SGp~HlA~A~g~p~valfGpt~p~~~~p~~~~~~~~~---~~~~c--m~~----I~~e~V~~~~~~ 318 (322)
T PRK10964 251 LAGAKA--VVSVD-TGLSHLTAALDRPNITLYGPTDPGLIGGYGKNQHACR---SPGKS--MAD----LSAETVFQKLET 318 (322)
T ss_pred HHhCCE--EEecC-CcHHHHHHHhCCCEEEEECCCCcccccCCCCCceeec---CCCcc--ccc----CCHHHHHHHHHH
Confidence 899999 99975 5778889999999998721112111 111010 01111 223 889999999988
Q ss_pred Hhc
Q 017557 323 VMD 325 (369)
Q Consensus 323 ll~ 325 (369)
+|.
T Consensus 319 ~l~ 321 (322)
T PRK10964 319 LIS 321 (322)
T ss_pred Hhh
Confidence 774
No 159
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=74.54 E-value=17 Score=34.57 Aligned_cols=97 Identities=16% Similarity=0.104 Sum_probs=60.1
Q ss_pred CCceEEEeeCCCc-c---CCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhcCC---C-eeEeccc--
Q 017557 174 AKSLIFCALGSEC-V---LKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGR---G-FVHGGWV-- 243 (369)
Q Consensus 174 ~~~~v~vs~GS~~-~---~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~---~-~~v~~~~-- 243 (369)
+++.|.|.-|+.. . ++.+.+.++++.|...++++++.-++.+ ...-+.+.+..... + +-+.+-.
T Consensus 179 ~~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~Gg~~e------~~~~~~i~~~~~~~~~~~~~~l~g~~sL 252 (348)
T PRK10916 179 ERPIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLFGSAKD------HEAGNEILAALNTEQQAWCRNLAGETQL 252 (348)
T ss_pred CCCEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEEeCHHh------HHHHHHHHHhcccccccceeeccCCCCH
Confidence 4568888888752 2 6788999999998766777766543321 11111221111111 1 2222332
Q ss_pred Ch-HHhhcCCCccceeecCCCchHHHHHHhCCccccc
Q 017557 244 QQ-QLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLL 279 (369)
Q Consensus 244 pq-~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~ 279 (369)
.+ ..+++++++ ||+. ..|-++=|.+.|+|+|++
T Consensus 253 ~el~ali~~a~l--~I~n-DTGp~HlAaA~g~P~val 286 (348)
T PRK10916 253 EQAVILIAACKA--IVTN-DSGLMHVAAALNRPLVAL 286 (348)
T ss_pred HHHHHHHHhCCE--EEec-CChHHHHHHHhCCCEEEE
Confidence 23 348899998 9985 457788899999999875
No 160
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=73.67 E-value=15 Score=37.43 Aligned_cols=80 Identities=8% Similarity=0.006 Sum_probs=47.2
Q ss_pred hHHhhcCCCccceee-cCCC-chHHHHHHhCCccccccccc-chhHHHHHHhhhcceEEEEeecC-CCCccCHHHHHHHH
Q 017557 245 QQLILKHPSVGCFVT-HCGS-GSLSEAMVNECQLVLLPNVG-DQIINSRLMGEDLKVGVEVERGD-EDGLFTRDGVCKAV 320 (369)
Q Consensus 245 q~~lL~~~~~~~~It-HgG~-~s~~Eal~~GvP~i~~P~~~-DQ~~na~~v~~~~g~G~~l~~~~-~~~~~~~~~l~~ai 320 (369)
..++++.+++.++=+ +=|+ -++.||+++|+|+|+-...+ ..... ..+...-..|+.+...+ .+-.-+.+.|.+++
T Consensus 468 y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~-E~v~~~~~~gi~V~~r~~~~~~e~v~~La~~m 546 (590)
T cd03793 468 YEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFME-EHIEDPESYGIYIVDRRFKSPDESVQQLTQYM 546 (590)
T ss_pred hHHHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhH-HHhccCCCceEEEecCCccchHHHHHHHHHHH
Confidence 456788888833322 3454 48999999999999987643 22222 11111102577775322 11123567788888
Q ss_pred HHHhc
Q 017557 321 KAVMD 325 (369)
Q Consensus 321 ~~ll~ 325 (369)
.+++.
T Consensus 547 ~~~~~ 551 (590)
T cd03793 547 YEFCQ 551 (590)
T ss_pred HHHhC
Confidence 88875
No 161
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=71.11 E-value=99 Score=29.55 Aligned_cols=146 Identities=12% Similarity=0.283 Sum_probs=83.3
Q ss_pred CCceEEEeeCCCccCCHHHHHHHHHHHHh---------cCCc-EEEEECCCCCCCccccCCchhHHHHhcCCCe----eE
Q 017557 174 AKSLIFCALGSECVLKKDQFQELILGFEL---------TGLP-FFAALKPPTGHDTIESALPEGFEERVKGRGF----VH 239 (369)
Q Consensus 174 ~~~~v~vs~GS~~~~~~~~~~~~~~~l~~---------~~~~-~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~----~v 239 (369)
.++.++|| |....+.+.+..+++||.. .+++ .+.++++ .+.+.+.|.+.+...|. +.
T Consensus 253 ~~pallvs--STswTpDEdf~ILL~AL~~y~~~~~~~~~~lP~llciITG-------KGPlkE~Y~~~I~~~~~~~v~~~ 323 (444)
T KOG2941|consen 253 ERPALLVS--STSWTPDEDFGILLEALVIYEEQLYDKTHNLPSLLCIITG-------KGPLKEKYSQEIHEKNLQHVQVC 323 (444)
T ss_pred CCCeEEEe--cCCCCCcccHHHHHHHHHhhhhhhhhccCCCCcEEEEEcC-------CCchhHHHHHHHHHhcccceeee
Confidence 45677776 3333456778888888752 2333 3333332 24455566555544433 24
Q ss_pred ecccC---hHHhhcCCCccceeecCCCc-----hHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecCCCCcc
Q 017557 240 GGWVQ---QQLILKHPSVGCFVTHCGSG-----SLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGLF 311 (369)
Q Consensus 240 ~~~~p---q~~lL~~~~~~~~ItHgG~~-----s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~ 311 (369)
..|.. .-.+|+.+++|+.+|-.-.| -+..-.-+|+|++.+-+- .--..|++- .-|+...
T Consensus 324 tpWL~aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFGcglPvcA~~fk----cl~ELVkh~-eNGlvF~-------- 390 (444)
T KOG2941|consen 324 TPWLEAEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVNFK----CLDELVKHG-ENGLVFE-------- 390 (444)
T ss_pred ecccccccchhHhhccccceEeeecCcccCcchhHHHhhcCCCceeeecch----hHHHHHhcC-CCceEec--------
Confidence 45753 45699999999999876544 344555577777766431 112233333 4455543
Q ss_pred CHHHHHHHHHHHhcc---CCcchHHHHHHHHHH
Q 017557 312 TRDGVCKAVKAVMDD---DSEVGKDARQNHAEL 341 (369)
Q Consensus 312 ~~~~l~~ai~~ll~~---~~~~~~~~~~~a~~l 341 (369)
+.++|.+.+..++++ ..++-.++++|+++-
T Consensus 391 Ds~eLa~ql~~lf~~fp~~a~~l~~lkkn~~e~ 423 (444)
T KOG2941|consen 391 DSEELAEQLQMLFKNFPDNADELNQLKKNLREE 423 (444)
T ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHH
Confidence 467899988888763 122234566666654
No 162
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=70.48 E-value=64 Score=34.15 Aligned_cols=112 Identities=13% Similarity=0.090 Sum_probs=66.2
Q ss_pred eEecccChHH---hhcCCCccceeec---CCCc-hHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecCCCCc
Q 017557 238 VHGGWVQQQL---ILKHPSVGCFVTH---CGSG-SLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGL 310 (369)
Q Consensus 238 ~v~~~~pq~~---lL~~~~~~~~ItH---gG~~-s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~ 310 (369)
++.+++++.+ +++.+++ |+.- -|+| .+.|++++|+|-.+.|...+--.-+. +. ..|+.++.
T Consensus 345 ~~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~---~l-~~~llv~P------ 412 (726)
T PRK14501 345 YFYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAA---EL-AEALLVNP------ 412 (726)
T ss_pred EEeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchhH---Hh-CcCeEECC------
Confidence 3556777664 6777888 6653 3554 67899999776444443322111111 22 33777766
Q ss_pred cCHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Q 017557 311 FTRDGVCKAVKAVMDDDSEVGKDARQNHAELREFLISPGLENSYVDGFVQELHSL 365 (369)
Q Consensus 311 ~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~v~~l~~~ 365 (369)
.+.+.+.++|.++++. . .+..+++.+++.+.++ .-+...-++.+++.+.+.
T Consensus 413 ~d~~~la~ai~~~l~~--~-~~e~~~r~~~~~~~v~-~~~~~~w~~~~l~~l~~~ 463 (726)
T PRK14501 413 NDIEGIAAAIKRALEM--P-EEEQRERMQAMQERLR-RYDVHKWASDFLDELREA 463 (726)
T ss_pred CCHHHHHHHHHHHHcC--C-HHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHH
Confidence 4689999999999872 1 2345555555666654 334455566666655543
No 163
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=69.55 E-value=3.3 Score=33.25 Aligned_cols=33 Identities=15% Similarity=0.141 Sum_probs=27.3
Q ss_pred CCCEEEECC-CCChHHHHHHhCCCeEEEeCchHH
Q 017557 19 KPNIVFFDF-TYWLPSLARKLGIKSIAFVTVSPA 51 (369)
Q Consensus 19 ~pD~vI~D~-~~~~~~~A~~lgiP~v~~~~~~~~ 51 (369)
.+|+++.+. ...+..+|+++|||++.....+..
T Consensus 100 ~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~ 133 (139)
T PF03033_consen 100 ADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWF 133 (139)
T ss_dssp ECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGG
T ss_pred cchHHHhhhhcCccceeEhhhCchHHHHhhCCcC
Confidence 468888888 888999999999999998877655
No 164
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=68.86 E-value=4.8 Score=36.09 Aligned_cols=32 Identities=28% Similarity=0.359 Sum_probs=26.1
Q ss_pred CCEE-EECC--CCChHHHHHHhCCCeEEEeCchHH
Q 017557 20 PNIV-FFDF--TYWLPSLARKLGIKSIAFVTVSPA 51 (369)
Q Consensus 20 pD~v-I~D~--~~~~~~~A~~lgiP~v~~~~~~~~ 51 (369)
||++ |+|+ ---|..=|+++|||.|++.-+.+.
T Consensus 157 Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~d 191 (252)
T COG0052 157 PDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNCD 191 (252)
T ss_pred CCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCCC
Confidence 9977 5788 557888899999999998866544
No 165
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=68.11 E-value=21 Score=30.33 Aligned_cols=104 Identities=18% Similarity=0.295 Sum_probs=67.2
Q ss_pred CceEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhcCCCeeEecccChHHhhcCCCc
Q 017557 175 KSLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGRGFVHGGWVQQQLILKHPSV 254 (369)
Q Consensus 175 ~~~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~ 254 (369)
+.+-.+.+|.++ +++++.++..|.+++..-+... ... .+.+ .++ .+.+..++++.+++
T Consensus 37 ~tvgIiG~G~IG-------~~vA~~l~~fG~~V~~~d~~~~-----~~~---~~~~----~~~---~~~~l~ell~~aDi 94 (178)
T PF02826_consen 37 KTVGIIGYGRIG-------RAVARRLKAFGMRVIGYDRSPK-----PEE---GADE----FGV---EYVSLDELLAQADI 94 (178)
T ss_dssp SEEEEESTSHHH-------HHHHHHHHHTT-EEEEEESSCH-----HHH---HHHH----TTE---EESSHHHHHHH-SE
T ss_pred CEEEEEEEcCCc-------CeEeeeeecCCceeEEecccCC-----hhh---hccc----ccc---eeeehhhhcchhhh
Confidence 558888999998 7788888888998877754431 000 0110 122 56688899999999
Q ss_pred cceeecCCCchHHHHHHhCCcccccccc--cchhHHHHHHhhhcceEE-EEeecCCCCccCHHHHHHHHHH
Q 017557 255 GCFVTHCGSGSLSEAMVNECQLVLLPNV--GDQIINSRLMGEDLKVGV-EVERGDEDGLFTRDGVCKAVKA 322 (369)
Q Consensus 255 ~~~ItHgG~~s~~Eal~~GvP~i~~P~~--~DQ~~na~~v~~~~g~G~-~l~~~~~~~~~~~~~l~~ai~~ 322 (369)
++.|+ |+. ..+..|++.+... +-|. .+... .++.++.+.|.+++++
T Consensus 95 --v~~~~------------------plt~~T~~li~~~~l~~m-k~ga~lvN~a-RG~~vde~aL~~aL~~ 143 (178)
T PF02826_consen 95 --VSLHL------------------PLTPETRGLINAEFLAKM-KPGAVLVNVA-RGELVDEDALLDALES 143 (178)
T ss_dssp --EEE-S------------------SSSTTTTTSBSHHHHHTS-TTTEEEEESS-SGGGB-HHHHHHHHHT
T ss_pred --hhhhh------------------ccccccceeeeeeeeecc-ccceEEEecc-chhhhhhhHHHHHHhh
Confidence 88887 443 3567888888887 7554 44443 3667888888888754
No 166
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=67.14 E-value=1e+02 Score=28.34 Aligned_cols=96 Identities=16% Similarity=0.223 Sum_probs=55.6
Q ss_pred eEEEeeCCCcc--CCHHHHHH----HHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhcC-CCee----EecccCh
Q 017557 177 LIFCALGSECV--LKKDQFQE----LILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKG-RGFV----HGGWVQQ 245 (369)
Q Consensus 177 ~v~vs~GS~~~--~~~~~~~~----~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~-~~~~----v~~~~pq 245 (369)
|..+-.|+... ...++... +.+.++..+.+|++...... .+.+-.-+...+.+ ++++ -.++-|.
T Consensus 164 vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~~g~~~lisfSRRT-----p~~~~s~l~~~l~s~~~i~w~~~d~g~NPY 238 (329)
T COG3660 164 VAVLVGGNNKAFVFQEDKAHQFASLLVKILENQGGSFLISFSRRT-----PDTVKSILKNNLNSSPGIVWNNEDTGYNPY 238 (329)
T ss_pred EEEEecCCCCCCccCHHHHHHHHHHHHHHHHhCCceEEEEeecCC-----cHHHHHHHHhccccCceeEeCCCCCCCCch
Confidence 44555566554 33433332 55556778999998875431 11111111221111 1111 1256688
Q ss_pred HHhhcCCCccceeecCC-CchHHHHHHhCCccccc
Q 017557 246 QLILKHPSVGCFVTHCG-SGSLSEAMVNECQLVLL 279 (369)
Q Consensus 246 ~~lL~~~~~~~~ItHgG-~~s~~Eal~~GvP~i~~ 279 (369)
.++|+.++- +|.-.. .|...||.+.|+|+-++
T Consensus 239 ~~~La~Ady--ii~TaDSinM~sEAasTgkPv~~~ 271 (329)
T COG3660 239 IDMLAAADY--IISTADSINMCSEAASTGKPVFIL 271 (329)
T ss_pred HHHHhhcce--EEEecchhhhhHHHhccCCCeEEE
Confidence 999998887 776665 46778999999997654
No 167
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=66.37 E-value=9.9 Score=32.00 Aligned_cols=42 Identities=19% Similarity=0.305 Sum_probs=29.0
Q ss_pred cHHHHHHHHhhcCCCEEEECC-CCChHHHH----H-Hh-CCCeEEEeCc
Q 017557 7 TEPAIEAIVRDIKPNIVFFDF-TYWLPSLA----R-KL-GIKSIAFVTV 48 (369)
Q Consensus 7 ~~~~l~~~l~~~~pD~vI~D~-~~~~~~~A----~-~l-giP~v~~~~~ 48 (369)
+.+.+.++|++.+||+||+-. ++....++ + .+ ++|.+++.+-
T Consensus 77 ~~~~l~~~l~~~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvTD 125 (169)
T PF06925_consen 77 FARRLIRLLREFQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVTD 125 (169)
T ss_pred HHHHHHHHHhhcCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEcC
Confidence 556788999999999999998 64443122 2 23 5787776654
No 168
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=65.41 E-value=15 Score=35.17 Aligned_cols=97 Identities=9% Similarity=0.189 Sum_probs=58.5
Q ss_pred CCeeEe-cccChHHhhcCCCccceeecCCCchHHHHHHhCCcccccccccchhHHHH----HHhhhcceEEEEeecCCCC
Q 017557 235 RGFVHG-GWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINSR----LMGEDLKVGVEVERGDEDG 309 (369)
Q Consensus 235 ~~~~v~-~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~----~v~~~~g~G~~l~~~~~~~ 309 (369)
.++... ...+-.++|..+++ +||--. +.+.|.++.++|+|....-.|.+...+ -.++. ..|..+
T Consensus 252 ~~i~~~~~~~~~~~ll~~aDi--LITDyS-Si~fD~~~l~KPiify~~D~~~Y~~~rg~~~~~~~~-~pg~~~------- 320 (369)
T PF04464_consen 252 SNIIFVSDNEDIYDLLAAADI--LITDYS-SIIFDFLLLNKPIIFYQPDLEEYEKERGFYFDYEED-LPGPIV------- 320 (369)
T ss_dssp TTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTTTSSBSS-TTTS-SSS-EE-------
T ss_pred CcEEECCCCCCHHHHHHhcCE--EEEech-hHHHHHHHhCCCEEEEeccHHHHhhccCCCCchHhh-CCCcee-------
Confidence 455543 34567889999999 999873 477899999999998765555442211 01111 233222
Q ss_pred ccCHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhc
Q 017557 310 LFTRDGVCKAVKAVMDDDSEVGKDARQNHAELREFLIS 347 (369)
Q Consensus 310 ~~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~ 347 (369)
-+.++|.++|+.++.+ +..++++.++..+.+-.
T Consensus 321 -~~~~eL~~~i~~~~~~----~~~~~~~~~~~~~~~~~ 353 (369)
T PF04464_consen 321 -YNFEELIEAIENIIEN----PDEYKEKREKFRDKFFK 353 (369)
T ss_dssp -SSHHHHHHHHTTHHHH----HHHTHHHHHHHHHHHST
T ss_pred -CCHHHHHHHHHhhhhC----CHHHHHHHHHHHHHhCC
Confidence 4678999999999873 44566777777777753
No 169
>PRK12342 hypothetical protein; Provisional
Probab=62.97 E-value=14 Score=33.66 Aligned_cols=40 Identities=20% Similarity=0.149 Sum_probs=30.8
Q ss_pred HHHHHHHhhcCCCEEEECC--CC-----ChHHHHHHhCCCeEEEeCc
Q 017557 9 PAIEAIVRDIKPNIVFFDF--TY-----WLPSLARKLGIKSIAFVTV 48 (369)
Q Consensus 9 ~~l~~~l~~~~pD~vI~D~--~~-----~~~~~A~~lgiP~v~~~~~ 48 (369)
.-|.+.+++..||+|++-. .. .+..+|+.||+|++++...
T Consensus 99 ~~La~~i~~~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 99 KALAAAIEKIGFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred HHHHHHHHHhCCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 4566667777899999764 22 3789999999999998754
No 170
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=62.17 E-value=1.4e+02 Score=32.54 Aligned_cols=107 Identities=9% Similarity=0.101 Sum_probs=59.4
Q ss_pred ccChH---HhhcCCCccceee---cCCCchH-HHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecCCCCccCHH
Q 017557 242 WVQQQ---LILKHPSVGCFVT---HCGSGSL-SEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGLFTRD 314 (369)
Q Consensus 242 ~~pq~---~lL~~~~~~~~It---HgG~~s~-~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~ 314 (369)
.+|.. .+++.+++ |+- +-|+|-+ .|+++++..--+.+...+--.-|..+ . .-|+.+.. .+.+
T Consensus 447 ~l~~eeL~AlY~~ADV--~lvTslrDGmNLva~Eyva~~~~~~GvLILSEfaGaa~~L--~-~~AllVNP------~D~~ 515 (934)
T PLN03064 447 SLDFHALCALYAVTDV--ALVTSLRDGMNLVSYEFVACQDSKKGVLILSEFAGAAQSL--G-AGAILVNP------WNIT 515 (934)
T ss_pred CCCHHHHHHHHHhCCE--EEeCccccccCchHHHHHHhhcCCCCCeEEeCCCchHHHh--C-CceEEECC------CCHH
Confidence 35554 46677787 664 3488755 49999955211111112212222222 1 24677777 5789
Q ss_pred HHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 017557 315 GVCKAVKAVMD-DDSEVGKDARQNHAELREFLISPGLENSYVDGFVQELHS 364 (369)
Q Consensus 315 ~l~~ai~~ll~-~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~v~~l~~ 364 (369)
.+.++|.+.|+ + .+.-+++.+++.+.+.. -....-++.|++.|.+
T Consensus 516 ~vA~AI~~AL~M~----~~Er~~r~~~~~~~V~~-~d~~~Wa~~fl~~L~~ 561 (934)
T PLN03064 516 EVAASIAQALNMP----EEEREKRHRHNFMHVTT-HTAQEWAETFVSELND 561 (934)
T ss_pred HHHHHHHHHHhCC----HHHHHHHHHHHHhhccc-CCHHHHHHHHHHHHHH
Confidence 99999999886 2 34455555555555553 2334445555555544
No 171
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=61.59 E-value=13 Score=32.20 Aligned_cols=42 Identities=10% Similarity=-0.040 Sum_probs=30.4
Q ss_pred hcHHHHHHHHhhcCCCEEE-ECC--CCChHHHHHHhCCCeEEEeC
Q 017557 6 LTEPAIEAIVRDIKPNIVF-FDF--TYWLPSLARKLGIKSIAFVT 47 (369)
Q Consensus 6 ~~~~~l~~~l~~~~pD~vI-~D~--~~~~~~~A~~lgiP~v~~~~ 47 (369)
.+...+.+.+++.++|+|+ .+. .+.|..+|..+|+|++..-.
T Consensus 37 ~i~~~la~~~~~~~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vRK 81 (189)
T PRK09219 37 EIGKEFARRFKDEGITKILTIEASGIAPAVMAALALGVPVVFAKK 81 (189)
T ss_pred HHHHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHCCCEEEEEE
Confidence 3344444555555799998 444 77899999999999998753
No 172
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=61.54 E-value=21 Score=33.75 Aligned_cols=94 Identities=15% Similarity=0.159 Sum_probs=59.0
Q ss_pred CceEEEeeC-CCcc---CCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhcCCCee-EecccC--h-H
Q 017557 175 KSLIFCALG-SECV---LKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGRGFV-HGGWVQ--Q-Q 246 (369)
Q Consensus 175 ~~~v~vs~G-S~~~---~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~-v~~~~p--q-~ 246 (369)
++.|.++-| |.+. ++.+.+.++++.+.+.++++++..+.. + ....+.+.... .+.. +.+-.+ + .
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~-e-----~e~~~~i~~~~--~~~~~l~~k~sL~e~~ 246 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPD-E-----EERAEEIAKGL--PNAVILAGKTSLEELA 246 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChH-H-----HHHHHHHHHhc--CCccccCCCCCHHHHH
Confidence 568888888 4423 678999999999998886666665441 1 11111111111 1111 333332 3 3
Q ss_pred HhhcCCCccceeecCCCchHHHHHHhCCccccc
Q 017557 247 LILKHPSVGCFVTHCGSGSLSEAMVNECQLVLL 279 (369)
Q Consensus 247 ~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~ 279 (369)
.+++++++ ||+. -.|-++=|.+.|+|+|++
T Consensus 247 ~li~~a~l--~I~~-DSg~~HlAaA~~~P~I~i 276 (334)
T COG0859 247 ALIAGADL--VIGN-DSGPMHLAAALGTPTIAL 276 (334)
T ss_pred HHHhcCCE--EEcc-CChHHHHHHHcCCCEEEE
Confidence 47788888 8875 456777889999999987
No 173
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=61.05 E-value=19 Score=30.83 Aligned_cols=37 Identities=11% Similarity=0.106 Sum_probs=28.7
Q ss_pred HHHHHHhhcCCCEEEE-CC--CCChHHHHHHhCCCeEEEe
Q 017557 10 AIEAIVRDIKPNIVFF-DF--TYWLPSLARKLGIKSIAFV 46 (369)
Q Consensus 10 ~l~~~l~~~~pD~vI~-D~--~~~~~~~A~~lgiP~v~~~ 46 (369)
.+.+.+.+.++|.|+. +. .+.|..+|.++|+|++..-
T Consensus 44 ~~~~~~~~~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~vR 83 (179)
T COG0503 44 ELAERYKDDGIDKIVTIEARGIPLAAAVALELGVPFVPVR 83 (179)
T ss_pred HHHHHhcccCCCEEEEEccccchhHHHHHHHhCCCEEEEE
Confidence 4555555557999984 44 8899999999999999853
No 174
>PRK06487 glycerate dehydrogenase; Provisional
Probab=60.91 E-value=38 Score=31.82 Aligned_cols=101 Identities=17% Similarity=0.210 Sum_probs=63.1
Q ss_pred CceEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhcCCCeeEecccChHHhhcCCCc
Q 017557 175 KSLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGRGFVHGGWVQQQLILKHPSV 254 (369)
Q Consensus 175 ~~~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~ 254 (369)
+.+-.+.+|.++ +++++.+...|.+++..-... . +. . ..+....++|+.+++
T Consensus 149 ktvgIiG~G~IG-------~~vA~~l~~fgm~V~~~~~~~-------~--~~---------~---~~~~~l~ell~~sDi 200 (317)
T PRK06487 149 KTLGLLGHGELG-------GAVARLAEAFGMRVLIGQLPG-------R--PA---------R---PDRLPLDELLPQVDA 200 (317)
T ss_pred CEEEEECCCHHH-------HHHHHHHhhCCCEEEEECCCC-------C--cc---------c---ccccCHHHHHHhCCE
Confidence 568899999998 667777777788876542211 0 00 0 134567889999998
Q ss_pred cceeecCCCchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHH
Q 017557 255 GCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKA 322 (369)
Q Consensus 255 ~~~ItHgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ 322 (369)
++.|+-.+.- .....|+..+... +-|-.+-.-..++.+..+.|.++++.
T Consensus 201 --v~l~lPlt~~----------------T~~li~~~~~~~m-k~ga~lIN~aRG~vVde~AL~~AL~~ 249 (317)
T PRK06487 201 --LTLHCPLTEH----------------TRHLIGARELALM-KPGALLINTARGGLVDEQALADALRS 249 (317)
T ss_pred --EEECCCCChH----------------HhcCcCHHHHhcC-CCCeEEEECCCccccCHHHHHHHHHc
Confidence 8888733211 2456677776666 65544433233566777777777653
No 175
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=60.59 E-value=98 Score=25.75 Aligned_cols=140 Identities=15% Similarity=0.138 Sum_probs=79.6
Q ss_pred eEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhcCCCeeEecccChHHhhcCCCccc
Q 017557 177 LIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGRGFVHGGWVQQQLILKHPSVGC 256 (369)
Q Consensus 177 ~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~ 256 (369)
.|-|-+||.. +-+.+++.++.|++.++++-..+-+ .+.-|+.+.+..+ =.....+++
T Consensus 4 ~V~IIMGS~S--D~~~mk~Aa~~L~~fgi~ye~~VvS-------AHRTPe~m~~ya~--------------~a~~~g~~v 60 (162)
T COG0041 4 KVGIIMGSKS--DWDTMKKAAEILEEFGVPYEVRVVS-------AHRTPEKMFEYAE--------------EAEERGVKV 60 (162)
T ss_pred eEEEEecCcc--hHHHHHHHHHHHHHcCCCeEEEEEe-------ccCCHHHHHHHHH--------------HHHHCCCeE
Confidence 5677789886 4566777888888888886554433 2344554432221 012233444
Q ss_pred eeecCCCc----hHHHHHHhCCccccccccc---chhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHHHhccCCc
Q 017557 257 FVTHCGSG----SLSEAMVNECQLVLLPNVG---DQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAVMDDDSE 329 (369)
Q Consensus 257 ~ItHgG~~----s~~Eal~~GvP~i~~P~~~---DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ll~~~~~ 329 (369)
||.-.|.. ++ -|...-+|+|++|... +..+---.+++. -.|+-+-.-.-+.-.++.-+...|-. +.
T Consensus 61 iIAgAGgAAHLPGm-vAa~T~lPViGVPv~s~~L~GlDSL~SiVQM-P~GvPVaTvaIg~a~NAallAa~ILa-~~---- 133 (162)
T COG0041 61 IIAGAGGAAHLPGM-VAAKTPLPVIGVPVQSKALSGLDSLLSIVQM-PAGVPVATVAIGNAANAALLAAQILA-IK---- 133 (162)
T ss_pred EEecCcchhhcchh-hhhcCCCCeEeccCccccccchHHHHHHhcC-CCCCeeEEEeecchhhHHHHHHHHHc-CC----
Confidence 77766632 22 2344579999999863 333333444554 55553332110112455555555532 23
Q ss_pred chHHHHHHHHHHHHHHhc
Q 017557 330 VGKDARQNHAELREFLIS 347 (369)
Q Consensus 330 ~~~~~~~~a~~l~~~~~~ 347 (369)
++.++++.+++++..++
T Consensus 134 -d~~l~~kl~~~r~~~~~ 150 (162)
T COG0041 134 -DPELAEKLAEFREAQTE 150 (162)
T ss_pred -CHHHHHHHHHHHHHHHH
Confidence 78999999999888774
No 176
>PRK04940 hypothetical protein; Provisional
Probab=60.22 E-value=14 Score=31.60 Aligned_cols=31 Identities=16% Similarity=0.250 Sum_probs=25.7
Q ss_pred CCCEEEECC--CCChHHHHHHhCCCeEEEeCch
Q 017557 19 KPNIVFFDF--TYWLPSLARKLGIKSIAFVTVS 49 (369)
Q Consensus 19 ~pD~vI~D~--~~~~~~~A~~lgiP~v~~~~~~ 49 (369)
++.++|-.. .+||.-+|+++|+|+|.+.|.-
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPAv 92 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPNL 92 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCCC
Confidence 466777555 8899999999999999998754
No 177
>KOG1344 consensus Predicted histone deacetylase [Chromatin structure and dynamics]
Probab=59.56 E-value=26 Score=31.19 Aligned_cols=48 Identities=15% Similarity=0.260 Sum_probs=34.7
Q ss_pred hhHhhcHHHHHHHHhhcCCCEEEECC-CCC----------------------hHHHHHHhCCCeEEEeCch
Q 017557 2 TAMDLTEPAIEAIVRDIKPNIVFFDF-TYW----------------------LPSLARKLGIKSIAFVTVS 49 (369)
Q Consensus 2 ~~~~~~~~~l~~~l~~~~pD~vI~D~-~~~----------------------~~~~A~~lgiP~v~~~~~~ 49 (369)
+.++++...++..+++++||+||+.. +.. ....++.+|||.+.+.+..
T Consensus 231 eYLrkl~r~l~~sl~ef~Pd~VvYNAGTDiLeGDpLG~L~ISp~Gi~~RDelVFr~~R~~~iPvvMltSGG 301 (324)
T KOG1344|consen 231 EYLRKLKRCLMQSLAEFRPDMVVYNAGTDILEGDPLGNLAISPEGIIERDELVFRTFRALGIPVVMLTSGG 301 (324)
T ss_pred HHHHHHHHHHHHHHHhhCCcEEEEeCCCccccCCCCCCeeecccccchhhHHHHHHHHHcCCcEEEEecCc
Confidence 35677788888888999999999976 321 1345677888888766543
No 178
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=59.17 E-value=8.7 Score=32.69 Aligned_cols=70 Identities=19% Similarity=0.225 Sum_probs=41.7
Q ss_pred cCCCccceeecCCCchHHHHHHhCCccccccccc-c----------------------hhHHHHHHhhhcceEEEEeecC
Q 017557 250 KHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVG-D----------------------QIINSRLMGEDLKVGVEVERGD 306 (369)
Q Consensus 250 ~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~P~~~-D----------------------Q~~na~~v~~~~g~G~~l~~~~ 306 (369)
.+..+.++|++||...+..... ++|+|-+|..+ | ....+..+.+.+|+-+....-
T Consensus 31 ~~~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~~i~~~~~- 108 (176)
T PF06506_consen 31 ESEGADVIISRGGTAELLRKHV-SIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGVDIKIYPY- 108 (176)
T ss_dssp TTTT-SEEEEEHHHHHHHHCC--SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-EEEEEEE-
T ss_pred HhcCCeEEEECCHHHHHHHHhC-CCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCCceEEEEE-
Confidence 4455555999999888888877 99999999843 3 222345555555665555543
Q ss_pred CCCccCHHHHHHHHHHHhc
Q 017557 307 EDGLFTRDGVCKAVKAVMD 325 (369)
Q Consensus 307 ~~~~~~~~~l~~ai~~ll~ 325 (369)
-+.+++...|.++..
T Consensus 109 ----~~~~e~~~~i~~~~~ 123 (176)
T PF06506_consen 109 ----DSEEEIEAAIKQAKA 123 (176)
T ss_dssp ----SSHHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHH
Confidence 356777777777654
No 179
>PRK10637 cysG siroheme synthase; Provisional
Probab=59.11 E-value=1.5e+02 Score=29.54 Aligned_cols=150 Identities=7% Similarity=0.021 Sum_probs=80.0
Q ss_pred CceEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhcCCCeeEecccChHHhhcCCCc
Q 017557 175 KSLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGRGFVHGGWVQQQLILKHPSV 254 (369)
Q Consensus 175 ~~~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~ 254 (369)
+.++.|..|..+ ..=++.|...+..+.++... +-+++.+.....++....---+..-+..+.+
T Consensus 13 ~~vlvvGgG~vA-------~rk~~~ll~~ga~v~visp~----------~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~l 75 (457)
T PRK10637 13 RDCLLVGGGDVA-------ERKARLLLDAGARLTVNALA----------FIPQFTAWADAGMLTLVEGPFDESLLDTCWL 75 (457)
T ss_pred CEEEEECCCHHH-------HHHHHHHHHCCCEEEEEcCC----------CCHHHHHHHhCCCEEEEeCCCChHHhCCCEE
Confidence 557777777765 22334455577777776432 2223333333345543332234455666666
Q ss_pred cceeecCCCchHHHHHHhCCccccccc-ccchhHHHH-----HHhhhcceEEEEeecCCCCccCHHHHHHHHHHHhccCC
Q 017557 255 GCFVTHCGSGSLSEAMVNECQLVLLPN-VGDQIINSR-----LMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAVMDDDS 328 (369)
Q Consensus 255 ~~~ItHgG~~s~~Eal~~GvP~i~~P~-~~DQ~~na~-----~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ll~~~~ 328 (369)
+|.--+-..+.+.++.-.---.++. ..|++..+. .+.+- ++-+.+..+..++ .-+..|++.|++++.
T Consensus 76 --v~~at~d~~~n~~i~~~a~~~~~lvN~~d~~~~~~f~~pa~~~~g-~l~iaisT~G~sP-~~a~~lr~~ie~~~~--- 148 (457)
T PRK10637 76 --AIAATDDDAVNQRVSEAAEARRIFCNVVDAPKAASFIMPSIIDRS-PLMVAVSSGGTSP-VLARLLREKLESLLP--- 148 (457)
T ss_pred --EEECCCCHHHhHHHHHHHHHcCcEEEECCCcccCeEEEeeEEecC-CEEEEEECCCCCc-HHHHHHHHHHHHhcc---
Confidence 7776666666666553322223333 245554443 23333 4555555433122 234668888888874
Q ss_pred cchHHHHHHHHHHHHHHhcC
Q 017557 329 EVGKDARQNHAELREFLISP 348 (369)
Q Consensus 329 ~~~~~~~~~a~~l~~~~~~~ 348 (369)
+.-..+-+.+.++++.+++.
T Consensus 149 ~~~~~~~~~~~~~R~~~k~~ 168 (457)
T PRK10637 149 QHLGQVAKYAGQLRGRVKQQ 168 (457)
T ss_pred hhHHHHHHHHHHHHHHHHHh
Confidence 22456777777788877754
No 180
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=58.70 E-value=21 Score=33.87 Aligned_cols=43 Identities=21% Similarity=0.282 Sum_probs=33.0
Q ss_pred HhhcHHHHHHHHhhcCCCEEEECC-CCC----------hHHHHHHhCCCeEEEe
Q 017557 4 MDLTEPAIEAIVRDIKPNIVFFDF-TYW----------LPSLARKLGIKSIAFV 46 (369)
Q Consensus 4 ~~~~~~~l~~~l~~~~pD~vI~D~-~~~----------~~~~A~~lgiP~v~~~ 46 (369)
.+.....+.+++++.+||++|+-+ +-. +..+.+++|||.++-.
T Consensus 65 ~eea~~~i~~mv~~~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vtaM 118 (349)
T PF07355_consen 65 KEEALKKILEMVKKLKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTAM 118 (349)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEEe
Confidence 455677788888999999999997 443 2346778999999854
No 181
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=58.52 E-value=56 Score=27.38 Aligned_cols=27 Identities=19% Similarity=0.426 Sum_probs=22.1
Q ss_pred ccceeecCCCc------hHHHHHHhCCcccccc
Q 017557 254 VGCFVTHCGSG------SLSEAMVNECQLVLLP 280 (369)
Q Consensus 254 ~~~~ItHgG~~------s~~Eal~~GvP~i~~P 280 (369)
.+++++|+|-| ++.+|...++|+|++.
T Consensus 64 ~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 64 LGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 44488888854 7779999999999996
No 182
>PRK06932 glycerate dehydrogenase; Provisional
Probab=58.28 E-value=45 Score=31.31 Aligned_cols=101 Identities=15% Similarity=0.155 Sum_probs=64.3
Q ss_pred CceEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhcCCCeeEecccChHHhhcCCCc
Q 017557 175 KSLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGRGFVHGGWVQQQLILKHPSV 254 (369)
Q Consensus 175 ~~~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~ 254 (369)
+.+..|.+|.++ +++++.+...|.+++.. ... . .. .. ..++.+..++|+.+++
T Consensus 148 ktvgIiG~G~IG-------~~va~~l~~fg~~V~~~-~~~-------~--~~---------~~-~~~~~~l~ell~~sDi 200 (314)
T PRK06932 148 STLGVFGKGCLG-------TEVGRLAQALGMKVLYA-EHK-------G--AS---------VC-REGYTPFEEVLKQADI 200 (314)
T ss_pred CEEEEECCCHHH-------HHHHHHHhcCCCEEEEE-CCC-------c--cc---------cc-ccccCCHHHHHHhCCE
Confidence 558899999998 66777777678886643 211 0 00 00 0135677889999999
Q ss_pred cceeecCCCchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHH
Q 017557 255 GCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVK 321 (369)
Q Consensus 255 ~~~ItHgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~ 321 (369)
++.|+-.+.- .....|++.+... +-|-.+-.-..++.+..+.|.++++
T Consensus 201 --v~l~~Plt~~----------------T~~li~~~~l~~m-k~ga~lIN~aRG~~Vde~AL~~aL~ 248 (314)
T PRK06932 201 --VTLHCPLTET----------------TQNLINAETLALM-KPTAFLINTGRGPLVDEQALLDALE 248 (314)
T ss_pred --EEEcCCCChH----------------HhcccCHHHHHhC-CCCeEEEECCCccccCHHHHHHHHH
Confidence 8888743221 2456677777777 6554443333366777888877776
No 183
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=57.82 E-value=16 Score=33.20 Aligned_cols=40 Identities=15% Similarity=0.057 Sum_probs=31.0
Q ss_pred HHHHHHHhhcCCCEEEECC-------CCChHHHHHHhCCCeEEEeCc
Q 017557 9 PAIEAIVRDIKPNIVFFDF-------TYWLPSLARKLGIKSIAFVTV 48 (369)
Q Consensus 9 ~~l~~~l~~~~pD~vI~D~-------~~~~~~~A~~lgiP~v~~~~~ 48 (369)
.-|.+.+++..||+|++-. .-.+..+|+.||+|++++...
T Consensus 102 ~~La~ai~~~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 102 SALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred HHHHHHHHHhCCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 4566667777899999754 225788999999999998764
No 184
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=57.82 E-value=54 Score=30.71 Aligned_cols=101 Identities=15% Similarity=0.126 Sum_probs=66.4
Q ss_pred CceEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhcCCCeeEecccChHHhhcCCCc
Q 017557 175 KSLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGRGFVHGGWVQQQLILKHPSV 254 (369)
Q Consensus 175 ~~~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~ 254 (369)
+.+-.|.+|+++ +++++-+...|.+++..-+.. .. . ... ..+.+..++|+.+++
T Consensus 146 ktvGIiG~G~IG-------~~vA~~~~~fgm~V~~~d~~~------~~---~-------~~~---~~~~~l~ell~~sDv 199 (311)
T PRK08410 146 KKWGIIGLGTIG-------KRVAKIAQAFGAKVVYYSTSG------KN---K-------NEE---YERVSLEELLKTSDI 199 (311)
T ss_pred CEEEEECCCHHH-------HHHHHHHhhcCCEEEEECCCc------cc---c-------ccC---ceeecHHHHhhcCCE
Confidence 568899999998 566666666688866542211 00 0 001 135677889999998
Q ss_pred cceeecCCCchHHHHHHhCCccccccccc--chhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHH
Q 017557 255 GCFVTHCGSGSLSEAMVNECQLVLLPNVG--DQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKA 322 (369)
Q Consensus 255 ~~~ItHgG~~s~~Eal~~GvP~i~~P~~~--DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ 322 (369)
++-|+ |+.. ....|++.+... +-|-.+-.-..++.+..+.|.++++.
T Consensus 200 --v~lh~------------------Plt~~T~~li~~~~~~~M-k~~a~lIN~aRG~vVDe~AL~~AL~~ 248 (311)
T PRK08410 200 --ISIHA------------------PLNEKTKNLIAYKELKLL-KDGAILINVGRGGIVNEKDLAKALDE 248 (311)
T ss_pred --EEEeC------------------CCCchhhcccCHHHHHhC-CCCeEEEECCCccccCHHHHHHHHHc
Confidence 88876 5543 456788888877 76655543334667888888888764
No 185
>PLN02293 adenine phosphoribosyltransferase
Probab=57.55 E-value=20 Score=30.95 Aligned_cols=42 Identities=19% Similarity=0.221 Sum_probs=30.9
Q ss_pred HhhcHHHHHHHHhhcCCCEEE-ECC--CCChHHHHHHhCCCeEEE
Q 017557 4 MDLTEPAIEAIVRDIKPNIVF-FDF--TYWLPSLARKLGIKSIAF 45 (369)
Q Consensus 4 ~~~~~~~l~~~l~~~~pD~vI-~D~--~~~~~~~A~~lgiP~v~~ 45 (369)
++.+.+.+.+.+++.++|+|+ .+. .++|..+|..+|+|++..
T Consensus 47 ~~~~~~~l~~~~~~~~~d~Ivg~e~~Gi~lA~~lA~~Lg~p~v~~ 91 (187)
T PLN02293 47 FKDTIDLFVERYRDMGISVVAGIEARGFIFGPPIALAIGAKFVPL 91 (187)
T ss_pred HHHHHHHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHCCCEEEE
Confidence 444556666666666789887 455 668899999999998753
No 186
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=55.54 E-value=20 Score=34.21 Aligned_cols=98 Identities=11% Similarity=0.111 Sum_probs=52.3
Q ss_pred ceEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCch-hHHH-HhcCCCee--------------E
Q 017557 176 SLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPE-GFEE-RVKGRGFV--------------H 239 (369)
Q Consensus 176 ~~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~-~~~~-~~~~~~~~--------------v 239 (369)
.+++.+.||.+-.-+ .-++++.|++.++++.|+....... ...+|+ ++.- .+...++. +
T Consensus 3 ~i~~~~GGTGGHi~P--ala~a~~l~~~g~~v~~vg~~~~~e---~~l~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 77 (352)
T PRK12446 3 KIVFTGGGSAGHVTP--NLAIIPYLKEDNWDISYIGSHQGIE---KTIIEKENIPYYSISSGKLRRYFDLKNIKDPFLVM 77 (352)
T ss_pred eEEEEcCCcHHHHHH--HHHHHHHHHhCCCEEEEEECCCccc---cccCcccCCcEEEEeccCcCCCchHHHHHHHHHHH
Confidence 367777777663222 2246666777789999887544211 111222 1110 00000110 0
Q ss_pred ecccChHHhhcC--CCccceeecCCCch---HHHHHHhCCcccccc
Q 017557 240 GGWVQQQLILKH--PSVGCFVTHCGSGS---LSEAMVNECQLVLLP 280 (369)
Q Consensus 240 ~~~~pq~~lL~~--~~~~~~ItHgG~~s---~~Eal~~GvP~i~~P 280 (369)
..+.--..++.. |++ +|++||.-| +..|...|+|++..=
T Consensus 78 ~~~~~~~~i~~~~kPdv--vi~~Ggy~s~p~~~aa~~~~~p~~i~e 121 (352)
T PRK12446 78 KGVMDAYVRIRKLKPDV--IFSKGGFVSVPVVIGGWLNRVPVLLHE 121 (352)
T ss_pred HHHHHHHHHHHhcCCCE--EEecCchhhHHHHHHHHHcCCCEEEEC
Confidence 011111123443 666 999999986 889999999998743
No 187
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=55.50 E-value=18 Score=31.17 Aligned_cols=45 Identities=13% Similarity=0.371 Sum_probs=33.4
Q ss_pred cHHHHHHHHhhcCCC--EEEECC--CCChHHHHHHhCCCeEEEeCchHH
Q 017557 7 TEPAIEAIVRDIKPN--IVFFDF--TYWLPSLARKLGIKSIAFVTVSPA 51 (369)
Q Consensus 7 ~~~~l~~~l~~~~pD--~vI~D~--~~~~~~~A~~lgiP~v~~~~~~~~ 51 (369)
....+++++++..++ ++|-.+ .++|.-+|+++|+|+|.+.|....
T Consensus 45 a~~~l~~~i~~~~~~~~~liGSSlGG~~A~~La~~~~~~avLiNPav~p 93 (187)
T PF05728_consen 45 AIAQLEQLIEELKPENVVLIGSSLGGFYATYLAERYGLPAVLINPAVRP 93 (187)
T ss_pred HHHHHHHHHHhCCCCCeEEEEEChHHHHHHHHHHHhCCCEEEEcCCCCH
Confidence 445677888877665 555444 778889999999999998876543
No 188
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.39 E-value=64 Score=29.84 Aligned_cols=40 Identities=18% Similarity=0.122 Sum_probs=31.2
Q ss_pred CeeEecccChHH---hhcCCCccceeecCCCchHHHHHHhCCcccc
Q 017557 236 GFVHGGWVQQQL---ILKHPSVGCFVTHCGSGSLSEAMVNECQLVL 278 (369)
Q Consensus 236 ~~~v~~~~pq~~---lL~~~~~~~~ItHgG~~s~~Eal~~GvP~i~ 278 (369)
.+.+.+|+||.+ +|..+++ -+-+ |--|...|..+|+|.+=
T Consensus 239 rvvklPFvpqddyd~LL~lcD~--n~VR-GEDSFVRAq~agkPflW 281 (370)
T COG4394 239 RVVKLPFVPQDDYDELLWLCDF--NLVR-GEDSFVRAQLAGKPFLW 281 (370)
T ss_pred EEEEecCCcHhHHHHHHHhccc--ceee-cchHHHHHHHcCCCcEE
Confidence 566779999864 8888887 3333 67899999999999863
No 189
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=53.12 E-value=69 Score=30.99 Aligned_cols=61 Identities=11% Similarity=0.211 Sum_probs=39.0
Q ss_pred CceEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhcCCCeeEecccChHHhhcCCCc
Q 017557 175 KSLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGRGFVHGGWVQQQLILKHPSV 254 (369)
Q Consensus 175 ~~~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~ 254 (369)
+.+-.|.+|.++ ..+++.+...|.+++..-... .. .. .. ..+.+..++++.+++
T Consensus 117 ktvGIIG~G~IG-------~~vA~~l~a~G~~V~~~dp~~-------~~-~~--------~~---~~~~~L~ell~~sDi 170 (378)
T PRK15438 117 RTVGIVGVGNVG-------RRLQARLEALGIKTLLCDPPR-------AD-RG--------DE---GDFRSLDELVQEADI 170 (378)
T ss_pred CEEEEECcCHHH-------HHHHHHHHHCCCEEEEECCcc-------cc-cc--------cc---cccCCHHHHHhhCCE
Confidence 557789999988 667777777788876552111 00 00 01 145677889999998
Q ss_pred cceeecCCC
Q 017557 255 GCFVTHCGS 263 (369)
Q Consensus 255 ~~~ItHgG~ 263 (369)
++.|.-.
T Consensus 171 --I~lh~PL 177 (378)
T PRK15438 171 --LTFHTPL 177 (378)
T ss_pred --EEEeCCC
Confidence 8877643
No 190
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=53.03 E-value=1.9e+02 Score=26.79 Aligned_cols=108 Identities=16% Similarity=0.153 Sum_probs=58.8
Q ss_pred eeEeCCCCCCCCCC-CchhHHHhhhccCCCCceEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCC
Q 017557 146 VILAGPVLPEPPAS-VLEEEFEMLFSSFKAKSLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGHDTIESAL 224 (369)
Q Consensus 146 ~~~vGp~~~~~~~~-~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~l 224 (369)
-+++|-...++.+. ..-+++.......+-+++-+-........+...+..+.++.++.|.++++-+|..... ..+
T Consensus 98 drf~~~~~v~p~~~~~a~~E~er~v~~~gf~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~~----~~~ 173 (293)
T COG2159 98 DRFVGFARVDPRDPEAAAEELERRVRELGFVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGPGG----AGL 173 (293)
T ss_pred cceeeeeeeCCCchHHHHHHHHHHHHhcCceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCCCC----ccc
Confidence 34555444443221 1234666666554323233322233333455668899999999999999977654211 011
Q ss_pred chhHHHHhcCCCeeEecccC---hHHhhcCCCccceeecCC--CchHHHHH
Q 017557 225 PEGFEERVKGRGFVHGGWVQ---QQLILKHPSVGCFVTHCG--SGSLSEAM 270 (369)
Q Consensus 225 p~~~~~~~~~~~~~v~~~~p---q~~lL~~~~~~~~ItHgG--~~s~~Eal 270 (369)
... ...| ..-+..+|++++++.|+| ..=..|++
T Consensus 174 ~~~-------------~~~p~~~~~va~~fP~l~IVl~H~G~~~p~~~~a~ 211 (293)
T COG2159 174 EKG-------------HSDPLYLDDVARKFPELKIVLGHMGEDYPWELEAI 211 (293)
T ss_pred ccC-------------CCCchHHHHHHHHCCCCcEEEEecCCCCchhHHHH
Confidence 100 0112 223556889999999999 54455553
No 191
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=52.76 E-value=62 Score=30.60 Aligned_cols=104 Identities=22% Similarity=0.344 Sum_probs=70.4
Q ss_pred CceEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhcCCCeeEecccChHHhhcCCCc
Q 017557 175 KSLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGRGFVHGGWVQQQLILKHPSV 254 (369)
Q Consensus 175 ~~~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~ 254 (369)
+.+=.+.+|.++ +++++-++..+.+++.--+.. .|+. .+ .. -..|++..++|+.+++
T Consensus 147 ktvGIiG~GrIG-------~avA~r~~~Fgm~v~y~~~~~---------~~~~-~~-----~~-~~~y~~l~ell~~sDi 203 (324)
T COG1052 147 KTLGIIGLGRIG-------QAVARRLKGFGMKVLYYDRSP---------NPEA-EK-----EL-GARYVDLDELLAESDI 203 (324)
T ss_pred CEEEEECCCHHH-------HHHHHHHhcCCCEEEEECCCC---------ChHH-Hh-----hc-CceeccHHHHHHhCCE
Confidence 446778888887 566666666677776664332 1111 10 11 1367778899999999
Q ss_pred cceeecCCCchHHHHHHhCCccccccccc--chhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHH
Q 017557 255 GCFVTHCGSGSLSEAMVNECQLVLLPNVG--DQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKA 322 (369)
Q Consensus 255 ~~~ItHgG~~s~~Eal~~GvP~i~~P~~~--DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ 322 (369)
++-|| |+.. ....|++.++.. +-|..+-.-..++.++.+.|.+++++
T Consensus 204 --i~l~~------------------Plt~~T~hLin~~~l~~m-k~ga~lVNtaRG~~VDe~ALi~AL~~ 252 (324)
T COG1052 204 --ISLHC------------------PLTPETRHLINAEELAKM-KPGAILVNTARGGLVDEQALIDALKS 252 (324)
T ss_pred --EEEeC------------------CCChHHhhhcCHHHHHhC-CCCeEEEECCCccccCHHHHHHHHHh
Confidence 88888 4433 457788999888 88776654445778888888888875
No 192
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=51.95 E-value=25 Score=34.56 Aligned_cols=37 Identities=11% Similarity=0.293 Sum_probs=29.9
Q ss_pred HHHHHHHhhcCCCEEEECCCCChHHHHHHhCCCeEEEeC
Q 017557 9 PAIEAIVRDIKPNIVFFDFTYWLPSLARKLGIKSIAFVT 47 (369)
Q Consensus 9 ~~l~~~l~~~~pD~vI~D~~~~~~~~A~~lgiP~v~~~~ 47 (369)
.++++.+++.+||++|.+. ....+|+++|+|++.+..
T Consensus 360 ~e~~~~i~~~~pdliig~~--~~~~~a~~~gip~~~~~~ 396 (430)
T cd01981 360 TEVGDMIARTEPELIFGTQ--MERHIGKRLDIPCAVISA 396 (430)
T ss_pred HHHHHHHHhhCCCEEEecc--hhhHHHHHcCCCEEEEeC
Confidence 5678888888999999987 344568999999988653
No 193
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=51.46 E-value=1.5e+02 Score=28.66 Aligned_cols=92 Identities=12% Similarity=0.037 Sum_probs=56.8
Q ss_pred cCCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCc-----hhHHHHhcCCCeeEecccChHH---hhcCCCcccee
Q 017557 187 VLKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALP-----EGFEERVKGRGFVHGGWVQQQL---ILKHPSVGCFV 258 (369)
Q Consensus 187 ~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp-----~~~~~~~~~~~~~v~~~~pq~~---lL~~~~~~~~I 258 (369)
.-+...+..+++++...+.++...+..+.........++ .+-......-.+.+.+|+||.+ +|..+++ -+
T Consensus 191 ~Ye~~~l~~ll~~~~~~~~pv~llvp~g~~~~~~~~~~~~~~~~~g~~~~~g~l~l~~lPF~~Q~~yD~LLw~cD~--Nf 268 (374)
T PF10093_consen 191 CYENAALASLLDAWAASPKPVHLLVPEGRALNSLAAWLGDALLQAGDSWQRGNLTLHVLPFVPQDDYDRLLWACDF--NF 268 (374)
T ss_pred eCCchHHHHHHHHHhcCCCCeEEEecCCccHHHHHHHhccccccCccccccCCeEEEECCCCCHHHHHHHHHhCcc--ce
Confidence 345566889999999888888777655421110000011 0000011122456778999964 8888887 44
Q ss_pred ecCCCchHHHHHHhCCccccccc
Q 017557 259 THCGSGSLSEAMVNECQLVLLPN 281 (369)
Q Consensus 259 tHgG~~s~~Eal~~GvP~i~~P~ 281 (369)
=+ |--|...|..+|+|.|=-.+
T Consensus 269 VR-GEDSfVRAqwAgkPFvWhIY 290 (374)
T PF10093_consen 269 VR-GEDSFVRAQWAGKPFVWHIY 290 (374)
T ss_pred Ee-cchHHHHHHHhCCCceEecC
Confidence 44 57799999999999885544
No 194
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=51.35 E-value=31 Score=33.64 Aligned_cols=43 Identities=14% Similarity=0.283 Sum_probs=33.0
Q ss_pred HhhcHHHHHHHHhhcCCCEEEECC-CCC----------hHHHHHHhCCCeEEEe
Q 017557 4 MDLTEPAIEAIVRDIKPNIVFFDF-TYW----------LPSLARKLGIKSIAFV 46 (369)
Q Consensus 4 ~~~~~~~l~~~l~~~~pD~vI~D~-~~~----------~~~~A~~lgiP~v~~~ 46 (369)
.+.....+.+++++.+||++|+-+ +-. +..+.+++|||.++-.
T Consensus 61 ~eea~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaM 114 (431)
T TIGR01917 61 LEEAKAKVLEMIKGANPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAM 114 (431)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 455667788888999999999997 443 2335678999999865
No 195
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=51.13 E-value=31 Score=33.59 Aligned_cols=43 Identities=12% Similarity=0.202 Sum_probs=33.0
Q ss_pred HhhcHHHHHHHHhhcCCCEEEECC-CCC----------hHHHHHHhCCCeEEEe
Q 017557 4 MDLTEPAIEAIVRDIKPNIVFFDF-TYW----------LPSLARKLGIKSIAFV 46 (369)
Q Consensus 4 ~~~~~~~l~~~l~~~~pD~vI~D~-~~~----------~~~~A~~lgiP~v~~~ 46 (369)
.+.....+.+++++.+||++|+-+ +-. +..+.+++|||.++-.
T Consensus 61 ~eea~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~M 114 (431)
T TIGR01918 61 LEEAVARVLEMLKDKEPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTSM 114 (431)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 455667788888999999999997 443 2335678999999865
No 196
>PLN02470 acetolactate synthase
Probab=50.99 E-value=17 Score=37.29 Aligned_cols=29 Identities=28% Similarity=0.590 Sum_probs=23.9
Q ss_pred CCccceeecCCCc------hHHHHHHhCCcccccc
Q 017557 252 PSVGCFVTHCGSG------SLSEAMVNECQLVLLP 280 (369)
Q Consensus 252 ~~~~~~ItHgG~~------s~~Eal~~GvP~i~~P 280 (369)
-.++++++|.|-| ++++|.+.++|+|++.
T Consensus 75 g~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 75 GKVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred CCCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 3566699999854 7789999999999995
No 197
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=50.69 E-value=25 Score=30.42 Aligned_cols=41 Identities=10% Similarity=-0.083 Sum_probs=29.9
Q ss_pred hcHHHHHHHHhhcCCCEEE-ECC--CCChHHHHHHhCCCeEEEe
Q 017557 6 LTEPAIEAIVRDIKPNIVF-FDF--TYWLPSLARKLGIKSIAFV 46 (369)
Q Consensus 6 ~~~~~l~~~l~~~~pD~vI-~D~--~~~~~~~A~~lgiP~v~~~ 46 (369)
.+...+.+.+++.++|+|+ .+. .+.|..+|..+|+|++..-
T Consensus 37 ~v~~~l~~~~~~~~~d~Vv~~ea~Gi~la~~lA~~Lg~p~v~vR 80 (191)
T TIGR01744 37 EVGEEFARRFADDGITKIVTIEASGIAPAIMTGLKLGVPVVFAR 80 (191)
T ss_pred HHHHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHCCCEEEEE
Confidence 3344444455555799998 455 7788999999999999865
No 198
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=50.03 E-value=29 Score=35.56 Aligned_cols=28 Identities=29% Similarity=0.621 Sum_probs=22.3
Q ss_pred CccceeecCCCc------hHHHHHHhCCcccccc
Q 017557 253 SVGCFVTHCGSG------SLSEAMVNECQLVLLP 280 (369)
Q Consensus 253 ~~~~~ItHgG~~------s~~Eal~~GvP~i~~P 280 (369)
+.+++++|.|-| ++.||...++|+|++-
T Consensus 78 ~~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~It 111 (571)
T PRK07710 78 KPGVVIATSGPGATNVVTGLADAMIDSLPLVVFT 111 (571)
T ss_pred CCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 344489998855 6789999999999984
No 199
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=49.80 E-value=1.4e+02 Score=28.04 Aligned_cols=105 Identities=14% Similarity=0.167 Sum_probs=58.1
Q ss_pred CceEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhcCCCeeEecccChHHhhcCCCc
Q 017557 175 KSLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGRGFVHGGWVQQQLILKHPSV 254 (369)
Q Consensus 175 ~~~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~ 254 (369)
+.+..|.+|+++ .++++-+...|.+++..-... ...+ ++ ..+.......++++.+++
T Consensus 137 ~tvgIvG~G~IG-------~~vA~~l~afG~~V~~~~~~~-------~~~~-~~--------~~~~~~~~l~e~l~~aDv 193 (312)
T PRK15469 137 FTIGILGAGVLG-------SKVAQSLQTWGFPLRCWSRSR-------KSWP-GV--------QSFAGREELSAFLSQTRV 193 (312)
T ss_pred CEEEEECCCHHH-------HHHHHHHHHCCCEEEEEeCCC-------CCCC-Cc--------eeecccccHHHHHhcCCE
Confidence 458899999998 677777777788866543221 0001 00 011123345678999998
Q ss_pred cceeecCCCchHHHHHHhCCcccccccccchhHHHHHHhhhcceE-EEEeecCCCCccCHHHHHHHHHH
Q 017557 255 GCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVG-VEVERGDEDGLFTRDGVCKAVKA 322 (369)
Q Consensus 255 ~~~ItHgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G-~~l~~~~~~~~~~~~~l~~ai~~ 322 (369)
++.|.-.+.-.+ +..|+..+... +-| +.+... .++.+..+.|.+++++
T Consensus 194 --vv~~lPlt~~T~----------------~li~~~~l~~m-k~ga~lIN~a-RG~vVde~aL~~aL~~ 242 (312)
T PRK15469 194 --LINLLPNTPETV----------------GIINQQLLEQL-PDGAYLLNLA-RGVHVVEDDLLAALDS 242 (312)
T ss_pred --EEECCCCCHHHH----------------HHhHHHHHhcC-CCCcEEEECC-CccccCHHHHHHHHhc
Confidence 888876544332 23344444444 433 333332 2445666666666543
No 200
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=49.74 E-value=68 Score=26.11 Aligned_cols=38 Identities=18% Similarity=0.302 Sum_probs=30.3
Q ss_pred CceEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECC
Q 017557 175 KSLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKP 213 (369)
Q Consensus 175 ~~~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~ 213 (369)
..+|.|++||......+.++++++.+. .+.+++++...
T Consensus 51 ~d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~~~ 88 (150)
T cd01840 51 RKTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVNPH 88 (150)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEECC
Confidence 459999999999878888999999884 45777776543
No 201
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=49.28 E-value=29 Score=35.07 Aligned_cols=37 Identities=11% Similarity=0.258 Sum_probs=30.0
Q ss_pred HHHHHHHHhhcCCCEEEECCCCChHHHHHHhCCCeEEEe
Q 017557 8 EPAIEAIVRDIKPNIVFFDFTYWLPSLARKLGIKSIAFV 46 (369)
Q Consensus 8 ~~~l~~~l~~~~pD~vI~D~~~~~~~~A~~lgiP~v~~~ 46 (369)
...+++.+++.+||+||.+. +...+|+++|||++.++
T Consensus 363 ~~ei~~~I~~~~pdliiGs~--~er~ia~~lgiP~~~is 399 (513)
T CHL00076 363 HTEVGDMIARVEPSAIFGTQ--MERHIGKRLDIPCGVIS 399 (513)
T ss_pred HHHHHHHHHhcCCCEEEECc--hhhHHHHHhCCCEEEee
Confidence 45678888888999999987 44556899999998865
No 202
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=48.77 E-value=1.7e+02 Score=24.99 Aligned_cols=52 Identities=12% Similarity=0.152 Sum_probs=34.9
Q ss_pred CCcccccccc----cch---hHHHHHHhhhcceEEEEeecC--------CCCccCHHHHHHHHHHHhc
Q 017557 273 ECQLVLLPNV----GDQ---IINSRLMGEDLKVGVEVERGD--------EDGLFTRDGVCKAVKAVMD 325 (369)
Q Consensus 273 GvP~i~~P~~----~DQ---~~na~~v~~~~g~G~~l~~~~--------~~~~~~~~~l~~ai~~ll~ 325 (369)
++|++..|-. ... ..|..++.+. |+=+.-.... .+...+.+++.+.+.+.+.
T Consensus 113 ~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~-G~~vi~p~~g~la~~~~g~g~~~~~~~i~~~v~~~~~ 179 (182)
T PRK07313 113 TTPKLIAPAMNTKMYENPATQRNLKTLKED-GVQEIEPKEGLLACGDEGYGALADIETILETIENTLK 179 (182)
T ss_pred CCCEEEEECCCHHHhcCHHHHHHHHHHHHC-CCEEECCCCCccccCCccCCCCCCHHHHHHHHHHHhc
Confidence 8999999963 232 5577888877 7766555421 1445677888887777664
No 203
>PRK07574 formate dehydrogenase; Provisional
Probab=48.74 E-value=79 Score=30.68 Aligned_cols=70 Identities=14% Similarity=0.151 Sum_probs=43.3
Q ss_pred CceEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhcCCCeeEecccChHHhhcCCCc
Q 017557 175 KSLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGRGFVHGGWVQQQLILKHPSV 254 (369)
Q Consensus 175 ~~~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~ 254 (369)
+.+-.|.+|+++ +.+++.+...+.+++..-+.. .+...... .++ ..+....++++.+++
T Consensus 193 ktVGIvG~G~IG-------~~vA~~l~~fG~~V~~~dr~~---------~~~~~~~~---~g~--~~~~~l~ell~~aDv 251 (385)
T PRK07574 193 MTVGIVGAGRIG-------LAVLRRLKPFDVKLHYTDRHR---------LPEEVEQE---LGL--TYHVSFDSLVSVCDV 251 (385)
T ss_pred CEEEEECCCHHH-------HHHHHHHHhCCCEEEEECCCC---------CchhhHhh---cCc--eecCCHHHHhhcCCE
Confidence 458888999998 677777777788765542221 11111111 122 223566789999999
Q ss_pred cceeecCCCchHH
Q 017557 255 GCFVTHCGSGSLS 267 (369)
Q Consensus 255 ~~~ItHgG~~s~~ 267 (369)
++.|+-.+.-.
T Consensus 252 --V~l~lPlt~~T 262 (385)
T PRK07574 252 --VTIHCPLHPET 262 (385)
T ss_pred --EEEcCCCCHHH
Confidence 99998765433
No 204
>PF10820 DUF2543: Protein of unknown function (DUF2543); InterPro: IPR020251 This entry contains proteins with no known function.
Probab=48.44 E-value=73 Score=22.53 Aligned_cols=46 Identities=11% Similarity=0.244 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcc
Q 017557 314 DGVCKAVKAVMDDDSEVGKDARQNHAELREFLISPGLENSYVDGFVQELHSLA 366 (369)
Q Consensus 314 ~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~v~~l~~~~ 366 (369)
.-+.-.|.++|+ ++.+.+.|++ +..+++|-....++++.++|..+|
T Consensus 34 hYFQlLitRLmn-----neeIsEeaQ~--EMA~eAgi~~~rID~IA~fLNqWG 79 (81)
T PF10820_consen 34 HYFQLLITRLMN-----NEEISEEAQQ--EMASEAGIDEQRIDDIANFLNQWG 79 (81)
T ss_pred HHHHHHHHHHhc-----cHhhhHHHHH--HHHHHcCCcHHHHHHHHHHHHHhc
Confidence 334556777787 7888887763 556677888899999999998876
No 205
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=46.79 E-value=20 Score=33.86 Aligned_cols=33 Identities=27% Similarity=0.353 Sum_probs=26.6
Q ss_pred CCCEEE-ECC--CCChHHHHHHhCCCeEEEeCchHH
Q 017557 19 KPNIVF-FDF--TYWLPSLARKLGIKSIAFVTVSPA 51 (369)
Q Consensus 19 ~pD~vI-~D~--~~~~~~~A~~lgiP~v~~~~~~~~ 51 (369)
.||+|| +|. ...+..=|.++|||+|++.-+.+.
T Consensus 152 ~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn~d 187 (326)
T PRK12311 152 LPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTNCD 187 (326)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCCCC
Confidence 599775 787 667888999999999998866543
No 206
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=46.34 E-value=29 Score=31.84 Aligned_cols=41 Identities=7% Similarity=0.037 Sum_probs=29.4
Q ss_pred cHHHHHHHHhhcCCCEEEE-CC--CCChHHHHHHhCCCeEEEeC
Q 017557 7 TEPAIEAIVRDIKPNIVFF-DF--TYWLPSLARKLGIKSIAFVT 47 (369)
Q Consensus 7 ~~~~l~~~l~~~~pD~vI~-D~--~~~~~~~A~~lgiP~v~~~~ 47 (369)
+...+.+.+++.++|+|+. +. .+.|..+|..+|+|.+..--
T Consensus 116 ig~~la~~~~~~~iD~VvgvetkGIpLA~avA~~L~vp~vivRK 159 (268)
T TIGR01743 116 IGKILASVFAEREIDAVMTVATKGIPLAYAVASVLNVPLVIVRK 159 (268)
T ss_pred HHHHHHHHhcCCCCCEEEEEccchHHHHHHHHHHHCCCEEEEEE
Confidence 3344444455557999984 44 77899999999999888643
No 207
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=46.22 E-value=34 Score=34.63 Aligned_cols=36 Identities=19% Similarity=0.283 Sum_probs=29.4
Q ss_pred HHHHHHHhhcCCCEEEECCCCChHHHHHHhCCCeEEEe
Q 017557 9 PAIEAIVRDIKPNIVFFDFTYWLPSLARKLGIKSIAFV 46 (369)
Q Consensus 9 ~~l~~~l~~~~pD~vI~D~~~~~~~~A~~lgiP~v~~~ 46 (369)
.++++.+++.+||+||.+. ....+|+++|||++.++
T Consensus 352 ~el~~~i~~~~PdliiG~~--~er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 352 LEVEDAIAEAAPELVLGTQ--MERHSAKRLGIPCAVIS 387 (519)
T ss_pred HHHHHHHHhcCCCEEEEcc--hHHHHHHHcCCCEEEec
Confidence 4777888888999999765 45668999999998765
No 208
>PRK09213 pur operon repressor; Provisional
Probab=45.80 E-value=29 Score=31.85 Aligned_cols=43 Identities=14% Similarity=0.043 Sum_probs=30.3
Q ss_pred hhcHHHHHHHHhhcCCCEEEE-CC--CCChHHHHHHhCCCeEEEeC
Q 017557 5 DLTEPAIEAIVRDIKPNIVFF-DF--TYWLPSLARKLGIKSIAFVT 47 (369)
Q Consensus 5 ~~~~~~l~~~l~~~~pD~vI~-D~--~~~~~~~A~~lgiP~v~~~~ 47 (369)
+.+...+.+.+.+.++|+|+. +. .+.|..+|..+|+|++..--
T Consensus 116 ~~i~~~la~~~~~~~iD~Vvtvet~GIplA~~vA~~L~vp~vivRK 161 (271)
T PRK09213 116 RKIGRIIASAFADKKIDAVMTVETKGIPLAYAVANYLNVPFVIVRR 161 (271)
T ss_pred HHHHHHHHHHhcccCCCEEEEEccccHHHHHHHHHHHCCCEEEEEE
Confidence 334444444555557999884 44 77899999999999988653
No 209
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=45.74 E-value=26 Score=30.45 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=26.1
Q ss_pred CCCEEE-ECC--CCChHHHHHHhCCCeEEEeCchHH
Q 017557 19 KPNIVF-FDF--TYWLPSLARKLGIKSIAFVTVSPA 51 (369)
Q Consensus 19 ~pD~vI-~D~--~~~~~~~A~~lgiP~v~~~~~~~~ 51 (369)
.||+|| +|. ..-|..=|.++|||++++.-+...
T Consensus 108 ~Pdlliv~dp~~~~~Av~EA~~l~IP~Iai~DTn~d 143 (196)
T TIGR01012 108 EPEVVVVTDPRADHQALKEASEVGIPIVALCDTDNP 143 (196)
T ss_pred CCCEEEEECCccccHHHHHHHHcCCCEEEEeeCCCC
Confidence 488774 787 667888999999999998765533
No 210
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=45.74 E-value=1.7e+02 Score=25.48 Aligned_cols=121 Identities=17% Similarity=0.123 Sum_probs=72.6
Q ss_pred CHHHH-HHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhcCCCeeEecccChHHhhcCCCccceeecCCCchHH
Q 017557 189 KKDQF-QELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGRGFVHGGWVQQQLILKHPSVGCFVTHCGSGSLS 267 (369)
Q Consensus 189 ~~~~~-~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~ItHgG~~s~~ 267 (369)
+.+.+ .++.+.|...+..+|+..|. -.-|.+.|.++.+++= +==||++ .=.++|..+..
T Consensus 63 ~r~~~d~~l~~~l~~~~~dlvvLAGy-------MrIL~~~fl~~~~grI-----------lNIHPSL--LP~f~G~h~~~ 122 (200)
T COG0299 63 SREAFDRALVEALDEYGPDLVVLAGY-------MRILGPEFLSRFEGRI-----------LNIHPSL--LPAFPGLHAHE 122 (200)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcch-------HHHcCHHHHHHhhcce-----------EecCccc--ccCCCCchHHH
Confidence 34444 45888888888888887664 3445556655443211 1248898 99999999999
Q ss_pred HHHHhCCccccccccc-c-hhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Q 017557 268 EAMVNECQLVLLPNVG-D-QIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAVMDDDSEVGKDARQNHAELRE 343 (369)
Q Consensus 268 Eal~~GvP~i~~P~~~-D-Q~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~ 343 (369)
+|+.+|+..-++-.+. | ..+-+-.+.+ ..+-+..+ -|.|.|.+.|.+.- -.-|-+-.+.+.+
T Consensus 123 ~A~~aG~k~sG~TVH~V~e~vD~GpII~Q---~~Vpv~~~-----Dt~etl~~RV~~~E------h~lyp~~v~~~~~ 186 (200)
T COG0299 123 QALEAGVKVSGCTVHFVTEGVDTGPIIAQ---AAVPVLPG-----DTAETLEARVLEQE------HRLYPLAVKLLAE 186 (200)
T ss_pred HHHHcCCCccCcEEEEEccCCCCCCeEEE---EeeeecCC-----CCHHHHHHHHHHHH------HHHHHHHHHHHHh
Confidence 9999999987776542 2 1111111111 12222232 37888888876643 2445555554443
No 211
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=45.55 E-value=2.5e+02 Score=26.03 Aligned_cols=37 Identities=14% Similarity=0.080 Sum_probs=19.3
Q ss_pred HHHHHHhhcCCCEEEECC----CCChHHHHHHhCCCeEEEe
Q 017557 10 AIEAIVRDIKPNIVFFDF----TYWLPSLARKLGIKSIAFV 46 (369)
Q Consensus 10 ~l~~~l~~~~pD~vI~D~----~~~~~~~A~~lgiP~v~~~ 46 (369)
..++++++.++++||... ......+++..+||.+...
T Consensus 58 ~a~~li~~~~v~aiig~~~s~~~~~~~~~~~~~~ip~i~~~ 98 (346)
T cd06330 58 EARELVENEGVDMLIGLISSGVALAVAPVAEELKVFFIATD 98 (346)
T ss_pred HHHHHHhccCCcEEEcccchHHHHHHHHHHHHcCCeEEEcC
Confidence 445555555666666332 2233445556666666644
No 212
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=45.52 E-value=34 Score=28.91 Aligned_cols=37 Identities=24% Similarity=0.277 Sum_probs=24.8
Q ss_pred HHHHHHHhhcCCCEEEECC-CCC--hHHHHHHhCCCeEEEe
Q 017557 9 PAIEAIVRDIKPNIVFFDF-TYW--LPSLARKLGIKSIAFV 46 (369)
Q Consensus 9 ~~l~~~l~~~~pD~vI~D~-~~~--~~~~A~~lgiP~v~~~ 46 (369)
+.++.++ ..+||+||... ..- ....-++.|||++.+.
T Consensus 60 ~n~E~ll-~l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 60 LNVELIV-ALKPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred CCHHHHh-ccCCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 3444444 47899999866 332 3445578899998875
No 213
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=45.08 E-value=29 Score=31.75 Aligned_cols=52 Identities=23% Similarity=0.335 Sum_probs=35.6
Q ss_pred CCCccceeecCCCchHHHHHH------hCCcccccccccchhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHHHh
Q 017557 251 HPSVGCFVTHCGSGSLSEAMV------NECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAVM 324 (369)
Q Consensus 251 ~~~~~~~ItHgG~~s~~Eal~------~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ll 324 (369)
.+++ +|+-||=||+..++. .++|++++-.. ..|..- + ++.+++.+++++++
T Consensus 35 ~~Dl--vi~iGGDGT~L~a~~~~~~~~~~iPilGIN~G--------------~lGFL~---~----~~~~~~~~~l~~i~ 91 (265)
T PRK04885 35 NPDI--VISVGGDGTLLSAFHRYENQLDKVRFVGVHTG--------------HLGFYT---D----WRPFEVDKLVIALA 91 (265)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcccCCCCeEEEEeCC--------------Cceecc---c----CCHHHHHHHHHHHH
Confidence 3556 999999999999975 48898888531 222222 2 45667777777777
Q ss_pred c
Q 017557 325 D 325 (369)
Q Consensus 325 ~ 325 (369)
+
T Consensus 92 ~ 92 (265)
T PRK04885 92 K 92 (265)
T ss_pred c
Confidence 5
No 214
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=45.01 E-value=33 Score=34.66 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=30.1
Q ss_pred HHHHHHHhhcCCCEEEECCCCChHHHHHHhCCCeEEEeC
Q 017557 9 PAIEAIVRDIKPNIVFFDFTYWLPSLARKLGIKSIAFVT 47 (369)
Q Consensus 9 ~~l~~~l~~~~pD~vI~D~~~~~~~~A~~lgiP~v~~~~ 47 (369)
..+++.+++.+||+||.+. ....+|+++|||++.++.
T Consensus 354 ~ei~~~i~~~~pdliiG~~--~er~~a~~lgip~~~i~~ 390 (511)
T TIGR01278 354 QEVADAIAALEPELVLGTQ--MERHSAKRLDIPCGVISA 390 (511)
T ss_pred HHHHHHHHhcCCCEEEECh--HHHHHHHHcCCCEEEecC
Confidence 4777888888999999987 456679999999987653
No 215
>PLN02928 oxidoreductase family protein
Probab=44.86 E-value=89 Score=29.81 Aligned_cols=118 Identities=19% Similarity=0.204 Sum_probs=61.2
Q ss_pred CceEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhcCCCeeEecccChHHhhcCCCc
Q 017557 175 KSLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGRGFVHGGWVQQQLILKHPSV 254 (369)
Q Consensus 175 ~~~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~ 254 (369)
+.+..|.+|.++ +++++.+...|.+++..-+...........+|....... ......+....++|+.+++
T Consensus 160 ktvGIiG~G~IG-------~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~L~ell~~aDi 229 (347)
T PLN02928 160 KTVFILGYGAIG-------IELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDL---VDEKGGHEDIYEFAGEADI 229 (347)
T ss_pred CEEEEECCCHHH-------HHHHHHHhhCCCEEEEECCCCChhhhhhhcccccccccc---ccccCcccCHHHHHhhCCE
Confidence 558899999998 677777777788876653221000000000010000000 0001145567789999999
Q ss_pred cceeecCCCchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHH
Q 017557 255 GCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVK 321 (369)
Q Consensus 255 ~~~ItHgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~ 321 (369)
++.|+-.+.- .....|+..+... +-|-.+-.-..++.+..+.|.++++
T Consensus 230 --Vvl~lPlt~~----------------T~~li~~~~l~~M-k~ga~lINvaRG~lVde~AL~~AL~ 277 (347)
T PLN02928 230 --VVLCCTLTKE----------------TAGIVNDEFLSSM-KKGALLVNIARGGLLDYDAVLAALE 277 (347)
T ss_pred --EEECCCCChH----------------hhcccCHHHHhcC-CCCeEEEECCCccccCHHHHHHHHH
Confidence 9998854422 1334455555555 4443332222245566666666665
No 216
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=44.59 E-value=25 Score=30.77 Aligned_cols=33 Identities=21% Similarity=0.240 Sum_probs=26.2
Q ss_pred CCCEEE-ECC--CCChHHHHHHhCCCeEEEeCchHH
Q 017557 19 KPNIVF-FDF--TYWLPSLARKLGIKSIAFVTVSPA 51 (369)
Q Consensus 19 ~pD~vI-~D~--~~~~~~~A~~lgiP~v~~~~~~~~ 51 (369)
.||+|| +|. ..-|..=|.++|||++++.-+.+.
T Consensus 114 ~Pdliiv~dp~~~~~AI~EA~kl~IP~IaivDTn~d 149 (204)
T PRK04020 114 EPDVVVVTDPRGDAQAVKEAIEVGIPVVALCDTDNL 149 (204)
T ss_pred CCCEEEEECCcccHHHHHHHHHhCCCEEEEEeCCCC
Confidence 589775 777 667888899999999999865543
No 217
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=44.21 E-value=37 Score=31.58 Aligned_cols=53 Identities=13% Similarity=0.219 Sum_probs=37.0
Q ss_pred cCCCccceeecCCCchHHHHHHh----CCcccccccccchhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHHHhc
Q 017557 250 KHPSVGCFVTHCGSGSLSEAMVN----ECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAVMD 325 (369)
Q Consensus 250 ~~~~~~~~ItHgG~~s~~Eal~~----GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ll~ 325 (369)
..+++ +|+-||=||+.+++.. ++|++++-.. ..|... + ++.+++.++++++++
T Consensus 62 ~~~d~--vi~~GGDGt~l~~~~~~~~~~~pilGIn~G--------------~lGFL~---~----~~~~~~~~~l~~~~~ 118 (291)
T PRK02155 62 ARADL--AVVLGGDGTMLGIGRQLAPYGVPLIGINHG--------------RLGFIT---D----IPLDDMQETLPPMLA 118 (291)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEcCC--------------Cccccc---c----CCHHHHHHHHHHHHc
Confidence 45666 9999999999999763 6788777421 223322 2 566778888888876
No 218
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=43.36 E-value=44 Score=34.17 Aligned_cols=28 Identities=18% Similarity=0.335 Sum_probs=22.1
Q ss_pred CccceeecCCCc------hHHHHHHhCCcccccc
Q 017557 253 SVGCFVTHCGSG------SLSEAMVNECQLVLLP 280 (369)
Q Consensus 253 ~~~~~ItHgG~~------s~~Eal~~GvP~i~~P 280 (369)
..+++++|.|-| .+.+|.+.++|+|++-
T Consensus 68 ~~gv~~~t~GpG~~N~l~gi~~A~~~~~Pvl~i~ 101 (572)
T PRK06456 68 VPGVCTATSGPGTTNLVTGLITAYWDSSPVIAIT 101 (572)
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHhhCCCEEEEe
Confidence 344488888844 6789999999999995
No 219
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=43.11 E-value=80 Score=29.04 Aligned_cols=88 Identities=18% Similarity=0.206 Sum_probs=52.6
Q ss_pred HHhhhccCCCCceEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhcCCCeeEecccC
Q 017557 165 FEMLFSSFKAKSLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGRGFVHGGWVQ 244 (369)
Q Consensus 165 ~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~p 244 (369)
..++|...+ .++++.+|+.+. ....+...|...+.++....+.. . .+ .
T Consensus 123 av~~L~~A~--rI~~~G~g~S~~----vA~~~~~~l~~ig~~~~~~~d~~------------~-------------~~-~ 170 (281)
T COG1737 123 AVELLAKAR--RIYFFGLGSSGL----VASDLAYKLMRIGLNVVALSDTH------------G-------------QL-M 170 (281)
T ss_pred HHHHHHcCC--eEEEEEechhHH----HHHHHHHHHHHcCCceeEecchH------------H-------------HH-H
Confidence 344555543 377777766652 23334555556777766664321 0 11 2
Q ss_pred hHHhhcCCCccceeecCCCc-----hHHHHHHhCCcccccccccc
Q 017557 245 QQLILKHPSVGCFVTHCGSG-----SLSEAMVNECQLVLLPNVGD 284 (369)
Q Consensus 245 q~~lL~~~~~~~~ItHgG~~-----s~~Eal~~GvP~i~~P~~~D 284 (369)
+...+...++-++|+|.|.+ .+..+-..|+|+|.+--..+
T Consensus 171 ~~~~~~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vIaiT~~~~ 215 (281)
T COG1737 171 QLALLTPGDVVIAISFSGYTREIVEAAELAKERGAKVIAITDSAD 215 (281)
T ss_pred HHHhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEcCCCC
Confidence 45566677777799999976 33345668999999865433
No 220
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=42.98 E-value=1e+02 Score=25.70 Aligned_cols=99 Identities=16% Similarity=0.100 Sum_probs=51.8
Q ss_pred hhHHHhhhccCCCCceEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhcCCCeeEec
Q 017557 162 EEEFEMLFSSFKAKSLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGRGFVHGG 241 (369)
Q Consensus 162 ~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~ 241 (369)
..++-++|.+.+ ...++.|..+ .+..+.++..+.+-+++=++..... .+..+. .-..+.+
T Consensus 20 A~~lg~~La~~g---~~lv~Gg~~G-----lM~a~a~ga~~~gg~viGVlp~~l~-------~~~~~~-----~~~i~~~ 79 (159)
T TIGR00725 20 AYRLGKELAKKG---HILINGGRTG-----VMEAVSKGAREAGGLVVGILPDEDF-------AGNPYL-----TIKVKTG 79 (159)
T ss_pred HHHHHHHHHHCC---CEEEcCCchh-----HHHHHHHHHHHCCCeEEEECChhhc-------cCCCCc-----eEEEECC
Confidence 456777887643 4555644443 3345555555556555555443210 000000 0112233
Q ss_pred c-cChHHhh-cCCCccceeecCCCchHHH---HHHhCCccccccc
Q 017557 242 W-VQQQLIL-KHPSVGCFVTHCGSGSLSE---AMVNECQLVLLPN 281 (369)
Q Consensus 242 ~-~pq~~lL-~~~~~~~~ItHgG~~s~~E---al~~GvP~i~~P~ 281 (369)
+ .+-..++ ..++. .++--||.||+.| ++.+++|++.++.
T Consensus 80 ~~~~Rk~~m~~~sda-~IvlpGG~GTL~E~~~a~~~~kpv~~l~~ 123 (159)
T TIGR00725 80 MNFARNFILVRSADV-VVSVGGGYGTAIEILGAYALGGPVVVLRG 123 (159)
T ss_pred CcchHHHHHHHHCCE-EEEcCCchhHHHHHHHHHHcCCCEEEEEC
Confidence 3 3344444 34443 4555688887765 5789999999885
No 221
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=42.58 E-value=2.3e+02 Score=26.32 Aligned_cols=114 Identities=13% Similarity=0.174 Sum_probs=69.1
Q ss_pred HHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhcCCCeeEecccChHHhhcCCCccceeecCCCchHHHHHHhCC
Q 017557 195 ELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGRGFVHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNEC 274 (369)
Q Consensus 195 ~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~Gv 274 (369)
++++.|+..+..+++..+.. .-+++.|.+..+.+- +==||++ .=...|.+....++..|+
T Consensus 160 ~~~~~l~~~~~Dlivlagym-------~il~~~~l~~~~~~i-----------iNiHpSl--LP~f~G~~~~~~ai~~G~ 219 (289)
T PRK13010 160 QILDLIETSGAELVVLARYM-------QVLSDDLSRKLSGRA-----------INIHHSF--LPGFKGARPYHQAHARGV 219 (289)
T ss_pred HHHHHHHHhCCCEEEEehhh-------hhCCHHHHhhccCCc-----------eeeCccc--CCCCCCCCHHHHHHHcCC
Confidence 45666666677777776542 445555554332221 1235555 555578999999999999
Q ss_pred ccccccccc--chhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHHHhccCCcchHHHHHHHHHHH
Q 017557 275 QLVLLPNVG--DQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAVMDDDSEVGKDARQNHAELR 342 (369)
Q Consensus 275 P~i~~P~~~--DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~ 342 (369)
...++-.+. +..+.+.-+.+. -+.+..+ -|.++|.+.+.++.. .-|-+..+.+.
T Consensus 220 k~tG~TvH~v~~~lD~GpII~Q~---~v~V~~~-----dt~e~L~~r~~~~E~------~~l~~ai~~~~ 275 (289)
T PRK13010 220 KLIGATAHFVTDDLDEGPIIEQD---VERVDHS-----YSPEDLVAKGRDVEC------LTLARAVKAFI 275 (289)
T ss_pred CeEEEEEEEEcCCCCCCCceEEE---EEEcCCC-----CCHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence 998888753 334444433333 3334444 478899888877653 55666555554
No 222
>PRK06436 glycerate dehydrogenase; Provisional
Probab=42.49 E-value=1.5e+02 Score=27.60 Aligned_cols=63 Identities=16% Similarity=0.192 Sum_probs=40.8
Q ss_pred CceEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhcCCCeeEecccChHHhhcCCCc
Q 017557 175 KSLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGRGFVHGGWVQQQLILKHPSV 254 (369)
Q Consensus 175 ~~~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~ 254 (369)
+.+-.+.+|+++ ..+++.+...|.+++..-+.. .+. ++.. .+.+..++++.+++
T Consensus 123 ktvgIiG~G~IG-------~~vA~~l~afG~~V~~~~r~~---------~~~---------~~~~-~~~~l~ell~~aDi 176 (303)
T PRK06436 123 KSLGILGYGGIG-------RRVALLAKAFGMNIYAYTRSY---------VND---------GISS-IYMEPEDIMKKSDF 176 (303)
T ss_pred CEEEEECcCHHH-------HHHHHHHHHCCCEEEEECCCC---------ccc---------Cccc-ccCCHHHHHhhCCE
Confidence 558899999998 566666666688766543221 011 1111 24567789999999
Q ss_pred cceeecCCCch
Q 017557 255 GCFVTHCGSGS 265 (369)
Q Consensus 255 ~~~ItHgG~~s 265 (369)
++.|+-.+.
T Consensus 177 --v~~~lp~t~ 185 (303)
T PRK06436 177 --VLISLPLTD 185 (303)
T ss_pred --EEECCCCCc
Confidence 999987654
No 223
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=42.20 E-value=1.3e+02 Score=29.07 Aligned_cols=62 Identities=18% Similarity=0.186 Sum_probs=38.2
Q ss_pred CceEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhcCCCeeEecccChHHhhcCCCc
Q 017557 175 KSLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGRGFVHGGWVQQQLILKHPSV 254 (369)
Q Consensus 175 ~~~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~ 254 (369)
+.+-.|.+|.++ ..+++.+...|.+++..-... .. .. .+ ..+.+..++++.+++
T Consensus 117 ktvGIIG~G~IG-------~~va~~l~a~G~~V~~~Dp~~-------~~-~~--------~~---~~~~~l~ell~~aDi 170 (381)
T PRK00257 117 RTYGVVGAGHVG-------GRLVRVLRGLGWKVLVCDPPR-------QE-AE--------GD---GDFVSLERILEECDV 170 (381)
T ss_pred CEEEEECCCHHH-------HHHHHHHHHCCCEEEEECCcc-------cc-cc--------cC---ccccCHHHHHhhCCE
Confidence 457788888887 666666767788876542111 00 00 01 135567778888888
Q ss_pred cceeecCCCc
Q 017557 255 GCFVTHCGSG 264 (369)
Q Consensus 255 ~~~ItHgG~~ 264 (369)
++.|.-.+
T Consensus 171 --V~lh~Plt 178 (381)
T PRK00257 171 --ISLHTPLT 178 (381)
T ss_pred --EEEeCcCC
Confidence 88877553
No 224
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=41.69 E-value=2.8e+02 Score=25.63 Aligned_cols=114 Identities=14% Similarity=0.143 Sum_probs=67.4
Q ss_pred HHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhcCCCeeEecccChHHhhcCCCccceeecCCCchHHHHHHhCCc
Q 017557 196 LILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGRGFVHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQ 275 (369)
Q Consensus 196 ~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP 275 (369)
+++.++..+..+++..+.. .-+|+.|.+..+.+- +==||++ .=.+.|.+.+..|+.+|+.
T Consensus 157 ~~~~l~~~~~Dlivlagy~-------~il~~~~l~~~~~~i-----------iNiHpSL--LP~~rG~~~~~~ai~~G~~ 216 (286)
T PRK13011 157 VLDVVEESGAELVVLARYM-------QVLSPELCRKLAGRA-----------INIHHSF--LPGFKGAKPYHQAYERGVK 216 (286)
T ss_pred HHHHHHHhCcCEEEEeChh-------hhCCHHHHhhccCCe-----------EEecccc--CCCCCCCcHHHHHHHCCCC
Confidence 4555555566666666542 345555544332211 1235666 6666799999999999999
Q ss_pred cccccccc--chhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Q 017557 276 LVLLPNVG--DQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAVMDDDSEVGKDARQNHAELRE 343 (369)
Q Consensus 276 ~i~~P~~~--DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~ 343 (369)
..++-.+. +..+-+.-+.+. -+.+..+ -|.++|.+.+.++- -.-|-+..+.+.+
T Consensus 217 ~tG~TvH~v~~~~D~G~Ii~Q~---~v~I~~~-----dt~~~L~~r~~~~E------~~~~~~ai~~~~~ 272 (286)
T PRK13011 217 LIGATAHYVTDDLDEGPIIEQD---VERVDHA-----YSPEDLVAKGRDVE------CLTLARAVKAHIE 272 (286)
T ss_pred eEEEEEEEEcCCCcCCCcEEEE---EEEcCCC-----CCHHHHHHHHHHHH------HHHHHHHHHHHHh
Confidence 98887653 333333333322 3444444 48999999987754 3566666665543
No 225
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=41.22 E-value=41 Score=29.03 Aligned_cols=42 Identities=7% Similarity=0.112 Sum_probs=30.2
Q ss_pred hhcHHHHHHHHhhcCCCEEEE-CC--CCChHHHHHHhCCCeEEEe
Q 017557 5 DLTEPAIEAIVRDIKPNIVFF-DF--TYWLPSLARKLGIKSIAFV 46 (369)
Q Consensus 5 ~~~~~~l~~~l~~~~pD~vI~-D~--~~~~~~~A~~lgiP~v~~~ 46 (369)
+.+...+.+.+++..+|.|+. +. .+.+..+|..+|+|++..-
T Consensus 59 ~~i~~~la~~~~~~~~d~I~g~~~~GiplA~~vA~~l~~p~v~vR 103 (187)
T PRK13810 59 KLIARQAALRIKEMDVDTVAGVELGGVPLATAVSLETGLPLLIVR 103 (187)
T ss_pred HHHHHHHHHHhccCCCCEEEEEccchHHHHHHHHHHhCCCEEEEe
Confidence 344455555666668999874 33 7788999999999998754
No 226
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=41.20 E-value=1.1e+02 Score=28.88 Aligned_cols=106 Identities=9% Similarity=0.084 Sum_probs=58.5
Q ss_pred CceEEEeeCCCccCCHHHHHHHHHHHH-hcCCcEEEEECCCCCCCccccCCchhHHHHhcCCCeeEecccChHHhhcCCC
Q 017557 175 KSLIFCALGSECVLKKDQFQELILGFE-LTGLPFFAALKPPTGHDTIESALPEGFEERVKGRGFVHGGWVQQQLILKHPS 253 (369)
Q Consensus 175 ~~~v~vs~GS~~~~~~~~~~~~~~~l~-~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~ 253 (369)
+.+..|.+|+++ +++++-+. ..+.+++...... +..... ..++ .+.+..++|+.++
T Consensus 146 ktvGIiG~G~IG-------~~va~~l~~~fgm~V~~~~~~~----------~~~~~~---~~~~---~~~~l~ell~~sD 202 (323)
T PRK15409 146 KTLGIVGMGRIG-------MALAQRAHFGFNMPILYNARRH----------HKEAEE---RFNA---RYCDLDTLLQESD 202 (323)
T ss_pred CEEEEEcccHHH-------HHHHHHHHhcCCCEEEEECCCC----------chhhHH---hcCc---EecCHHHHHHhCC
Confidence 558899999998 66666665 5677776442211 001000 0122 3567788999999
Q ss_pred ccceeecCCCchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHH
Q 017557 254 VGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKA 322 (369)
Q Consensus 254 ~~~~ItHgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ 322 (369)
+ ++.|+-.+.-. ....|++.+... +-|-.+-.-..++.+..+.|.+++++
T Consensus 203 v--v~lh~plt~~T----------------~~li~~~~l~~m-k~ga~lIN~aRG~vVde~AL~~AL~~ 252 (323)
T PRK15409 203 F--VCIILPLTDET----------------HHLFGAEQFAKM-KSSAIFINAGRGPVVDENALIAALQK 252 (323)
T ss_pred E--EEEeCCCChHH----------------hhccCHHHHhcC-CCCeEEEECCCccccCHHHHHHHHHc
Confidence 9 99988554322 224455555544 43333322222445555666555543
No 227
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=41.06 E-value=61 Score=27.22 Aligned_cols=29 Identities=14% Similarity=0.195 Sum_probs=23.8
Q ss_pred eEEEeeCCCccCCHHHHHHHHHHHHhcCC
Q 017557 177 LIFCALGSECVLKKDQFQELILGFELTGL 205 (369)
Q Consensus 177 ~v~vs~GS~~~~~~~~~~~~~~~l~~~~~ 205 (369)
.+|+|+||....+...++..+.+|.+.+.
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~ 31 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALAD 31 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCC
Confidence 79999999988777778888888876553
No 228
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=40.92 E-value=55 Score=27.42 Aligned_cols=42 Identities=29% Similarity=0.359 Sum_probs=32.0
Q ss_pred cHHHHHHHHhhcCCCEEEECC----CCChHHHHHHhCCCeEEEeCc
Q 017557 7 TEPAIEAIVRDIKPNIVFFDF----TYWLPSLARKLGIKSIAFVTV 48 (369)
Q Consensus 7 ~~~~l~~~l~~~~pD~vI~D~----~~~~~~~A~~lgiP~v~~~~~ 48 (369)
....+.+++++.+||+|+.-. ...+..+|.+||.|+++-...
T Consensus 71 ~a~al~~~i~~~~p~~Vl~~~t~~g~~la~rlAa~L~~~~vtdv~~ 116 (168)
T cd01715 71 YAPALVALAKKEKPSHILAGATSFGKDLAPRVAAKLDVGLISDVTA 116 (168)
T ss_pred HHHHHHHHHHhcCCCEEEECCCccccchHHHHHHHhCCCceeeEEE
Confidence 445667777777899999775 346788999999999986543
No 229
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.83 E-value=83 Score=21.10 Aligned_cols=33 Identities=12% Similarity=0.106 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcc
Q 017557 334 ARQNHAELREFLISPGLENSYVDGFVQELHSLA 366 (369)
Q Consensus 334 ~~~~a~~l~~~~~~~~~~~~~~~~~v~~l~~~~ 366 (369)
-.+.+.++.+.+.++-++-+++.-...++.+++
T Consensus 13 QQ~AVE~Iq~lMaeGmSsGEAIa~VA~elRe~h 45 (60)
T COG3140 13 QQKAVERIQELMAEGMSSGEAIALVAQELRENH 45 (60)
T ss_pred HHHHHHHHHHHHHccccchhHHHHHHHHHHHHh
Confidence 344455555566655555556555555555544
No 230
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=40.78 E-value=1.7e+02 Score=23.71 Aligned_cols=28 Identities=18% Similarity=0.415 Sum_probs=21.5
Q ss_pred ccceeecCCC------chHHHHHHhCCccccccc
Q 017557 254 VGCFVTHCGS------GSLSEAMVNECQLVLLPN 281 (369)
Q Consensus 254 ~~~~ItHgG~------~s~~Eal~~GvP~i~~P~ 281 (369)
..++++|+|- +.+.+|...++|+|.+.-
T Consensus 60 ~~v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 60 PGVVLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred CEEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 3348888664 467788999999999964
No 231
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=40.75 E-value=58 Score=27.42 Aligned_cols=48 Identities=8% Similarity=0.166 Sum_probs=34.9
Q ss_pred HhhcHHHHHHHHhhcCCCEEEECC-CCC---------------hHHHHHHhCCCeEEEeCchHH
Q 017557 4 MDLTEPAIEAIVRDIKPNIVFFDF-TYW---------------LPSLARKLGIKSIAFVTVSPA 51 (369)
Q Consensus 4 ~~~~~~~l~~~l~~~~pD~vI~D~-~~~---------------~~~~A~~lgiP~v~~~~~~~~ 51 (369)
+..+...+.+++++.+||.++.+- +.. ...++.+.|||..-+.|...-
T Consensus 46 l~~I~~~l~~~i~~~~Pd~vaiE~~f~~~n~~sa~~l~~arGvi~la~~~~~ipv~ey~P~~VK 109 (164)
T PRK00039 46 LKQIYDGLSELIDEYQPDEVAIEEVFFNKNPQSALKLGQARGVAILAAAQRGLPVAEYTPLQVK 109 (164)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEehhhhccChHHHHHHHHHHHHHHHHHHHcCCCEEEECHHHhh
Confidence 556778999999999999998886 433 123566778888877665433
No 232
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=40.42 E-value=39 Score=31.34 Aligned_cols=55 Identities=18% Similarity=0.227 Sum_probs=37.0
Q ss_pred hhcCCCccceeecCCCchHHHHHH----hCCcccccccccchhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHHH
Q 017557 248 ILKHPSVGCFVTHCGSGSLSEAMV----NECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAV 323 (369)
Q Consensus 248 lL~~~~~~~~ItHgG~~s~~Eal~----~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~l 323 (369)
+...+++ +|+-||=||+..++. .++|++++-.. ..|... + ++.+++.++++++
T Consensus 61 ~~~~~Dl--vi~iGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGFLt---~----~~~~~~~~~l~~i 117 (287)
T PRK14077 61 LFKISDF--LISLGGDGTLISLCRKAAEYDKFVLGIHAG--------------HLGFLT---D----ITVDEAEKFFQAF 117 (287)
T ss_pred cccCCCE--EEEECCCHHHHHHHHHhcCCCCcEEEEeCC--------------CcccCC---c----CCHHHHHHHHHHH
Confidence 3345666 999999999998765 37888877421 122211 2 5667788888887
Q ss_pred hc
Q 017557 324 MD 325 (369)
Q Consensus 324 l~ 325 (369)
++
T Consensus 118 ~~ 119 (287)
T PRK14077 118 FQ 119 (287)
T ss_pred Hc
Confidence 76
No 233
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=40.07 E-value=46 Score=32.66 Aligned_cols=36 Identities=19% Similarity=0.207 Sum_probs=29.0
Q ss_pred HHHHHHHhhcCCCEEEECCCCChHHHHHHhCCCeEEEe
Q 017557 9 PAIEAIVRDIKPNIVFFDFTYWLPSLARKLGIKSIAFV 46 (369)
Q Consensus 9 ~~l~~~l~~~~pD~vI~D~~~~~~~~A~~lgiP~v~~~ 46 (369)
.++++.+++.+||++|.+. ....+|+++|+|++.+.
T Consensus 361 ~el~~~i~~~~pdliig~~--~~~~~a~~~~ip~i~~~ 396 (428)
T cd01965 361 WDLESLAKEEPVDLLIGNS--HGRYLARDLGIPLVRVG 396 (428)
T ss_pred HHHHHHhhccCCCEEEECc--hhHHHHHhcCCCEEEec
Confidence 5677778888999999998 22678999999998653
No 234
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=39.98 E-value=2.2e+02 Score=23.77 Aligned_cols=134 Identities=13% Similarity=0.108 Sum_probs=71.7
Q ss_pred EeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhcCCCeeEecccChHHhhcCCCccceee
Q 017557 180 CALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGRGFVHGGWVQQQLILKHPSVGCFVT 259 (369)
Q Consensus 180 vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~It 259 (369)
|-+||.. +....++..+.|+..+.++-+.+-+ .+..|+.+.+.. .+..- .+..+ ||.
T Consensus 3 IimGS~S--D~~~~~~a~~~L~~~gi~~dv~V~S-------aHRtp~~~~~~~-----------~~a~~-~g~~v--iIa 59 (156)
T TIGR01162 3 IIMGSDS--DLPTMKKAADILEEFGIPYELRVVS-------AHRTPELMLEYA-----------KEAEE-RGIKV--IIA 59 (156)
T ss_pred EEECcHh--hHHHHHHHHHHHHHcCCCeEEEEEC-------cccCHHHHHHHH-----------HHHHH-CCCeE--EEE
Confidence 4456665 5567778888888888776554433 345565444321 11000 12334 998
Q ss_pred cCCCchHHHHH---HhCCcccccccccc--hhHHH-HHHhh--hcceE--EEEeecCCCCccCHHHHHHHHHHHhccCCc
Q 017557 260 HCGSGSLSEAM---VNECQLVLLPNVGD--QIINS-RLMGE--DLKVG--VEVERGDEDGLFTRDGVCKAVKAVMDDDSE 329 (369)
Q Consensus 260 HgG~~s~~Eal---~~GvP~i~~P~~~D--Q~~na-~~v~~--~~g~G--~~l~~~~~~~~~~~~~l~~ai~~ll~~~~~ 329 (369)
=+|...-.-.+ ..-+|+|++|.... ...++ --..+ . |+. ..--.+ ..++..+...|-. +.
T Consensus 60 ~AG~aa~Lpgvva~~t~~PVIgvP~~~~~l~G~daLlS~vqmP~-gvpvatv~I~~----~~nAa~~AaqIl~-~~---- 129 (156)
T TIGR01162 60 GAGGAAHLPGMVAALTPLPVIGVPVPSKALSGLDSLLSIVQMPS-GVPVATVAIGN----AGNAALLAAQILG-IK---- 129 (156)
T ss_pred eCCccchhHHHHHhccCCCEEEecCCccCCCCHHHHHHHhcCCC-CCeeEEEEcCC----hhHHHHHHHHHHc-CC----
Confidence 88875444333 34689999998432 11121 11222 3 422 221111 2455555555532 23
Q ss_pred chHHHHHHHHHHHHHHhc
Q 017557 330 VGKDARQNHAELREFLIS 347 (369)
Q Consensus 330 ~~~~~~~~a~~l~~~~~~ 347 (369)
++.++++.+..++.+++
T Consensus 130 -d~~l~~kl~~~r~~~~~ 146 (156)
T TIGR01162 130 -DPELAEKLKEYRENQKE 146 (156)
T ss_pred -CHHHHHHHHHHHHHHHH
Confidence 68888888888777663
No 235
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=39.94 E-value=40 Score=33.09 Aligned_cols=37 Identities=19% Similarity=0.283 Sum_probs=29.7
Q ss_pred HHHHHHHHhhcCCCEEEECCCCChHHHHHHhCCCeEEEe
Q 017557 8 EPAIEAIVRDIKPNIVFFDFTYWLPSLARKLGIKSIAFV 46 (369)
Q Consensus 8 ~~~l~~~l~~~~pD~vI~D~~~~~~~~A~~lgiP~v~~~ 46 (369)
..++.+++++.+||++|.... ...+|+++|||+..+.
T Consensus 358 ~~e~~~~i~~~~pDliig~~~--~~~~a~k~giP~~~~~ 394 (421)
T cd01976 358 HYELEEFVKRLKPDLIGSGIK--EKYVFQKMGIPFRQMH 394 (421)
T ss_pred HHHHHHHHHHhCCCEEEecCc--chhhhhhcCCCeEeCC
Confidence 457788888889999998873 5567999999997543
No 236
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=39.49 E-value=40 Score=29.26 Aligned_cols=29 Identities=21% Similarity=0.145 Sum_probs=25.4
Q ss_pred CCCEEEECC-CCChHHHHHHhCCCeEEEeC
Q 017557 19 KPNIVFFDF-TYWLPSLARKLGIKSIAFVT 47 (369)
Q Consensus 19 ~pD~vI~D~-~~~~~~~A~~lgiP~v~~~~ 47 (369)
.+.+||+|- ...+..-|+++|||+..+..
T Consensus 29 ~i~~Visd~~~A~~lerA~~~gIpt~~~~~ 58 (200)
T COG0299 29 EIVAVISDKADAYALERAAKAGIPTVVLDR 58 (200)
T ss_pred EEEEEEeCCCCCHHHHHHHHcCCCEEEecc
Confidence 468999999 88899999999999988764
No 237
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=38.80 E-value=66 Score=33.04 Aligned_cols=27 Identities=22% Similarity=0.439 Sum_probs=21.9
Q ss_pred ccceeecCCC------chHHHHHHhCCcccccc
Q 017557 254 VGCFVTHCGS------GSLSEAMVNECQLVLLP 280 (369)
Q Consensus 254 ~~~~ItHgG~------~s~~Eal~~GvP~i~~P 280 (369)
.+++++|.|- +++++|.+.++|+|.+-
T Consensus 64 ~gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~ 96 (586)
T PRK06276 64 VGVCVATSGPGATNLVTGIATAYADSSPVIALT 96 (586)
T ss_pred CEEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 4448888874 47889999999999984
No 238
>PRK08322 acetolactate synthase; Reviewed
Probab=38.73 E-value=1e+02 Score=31.36 Aligned_cols=28 Identities=14% Similarity=0.282 Sum_probs=22.4
Q ss_pred CccceeecCCC------chHHHHHHhCCcccccc
Q 017557 253 SVGCFVTHCGS------GSLSEAMVNECQLVLLP 280 (369)
Q Consensus 253 ~~~~~ItHgG~------~s~~Eal~~GvP~i~~P 280 (369)
+.+++++|.|- +++.+|...++|+|++-
T Consensus 63 ~~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 63 KAGVCLSTLGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred CCEEEEECCCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 34458888874 47889999999999984
No 239
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=38.67 E-value=2.6e+02 Score=26.59 Aligned_cols=106 Identities=18% Similarity=0.269 Sum_probs=66.5
Q ss_pred CCceEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhcCCCeeEecccChHHhhcCCC
Q 017557 174 AKSLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGRGFVHGGWVQQQLILKHPS 253 (369)
Q Consensus 174 ~~~~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~ 253 (369)
.+.+..+.+|+++ ..+++-|...+..+....+.. ..++...+. +. .++.-.+++..++
T Consensus 162 gK~vgilG~G~IG-------~~ia~rL~~Fg~~i~y~~r~~--------~~~~~~~~~----~~---~~~d~~~~~~~sD 219 (336)
T KOG0069|consen 162 GKTVGILGLGRIG-------KAIAKRLKPFGCVILYHSRTQ--------LPPEEAYEY----YA---EFVDIEELLANSD 219 (336)
T ss_pred CCEEEEecCcHHH-------HHHHHhhhhccceeeeecccC--------CchhhHHHh----cc---cccCHHHHHhhCC
Confidence 3568899999998 667777766663333332222 111111111 10 1556778888888
Q ss_pred ccceeecCCCchHHHHHHhCCccccccccc--chhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHH
Q 017557 254 VGCFVTHCGSGSLSEAMVNECQLVLLPNVG--DQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKA 322 (369)
Q Consensus 254 ~~~~ItHgG~~s~~Eal~~GvP~i~~P~~~--DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ 322 (369)
+ +|-|| |+.. ..-.|.+.++.. +-|..+-....++.+..+.+.++++.
T Consensus 220 ~--ivv~~------------------pLt~~T~~liNk~~~~~m-k~g~vlVN~aRG~iide~~l~eaL~s 269 (336)
T KOG0069|consen 220 V--IVVNC------------------PLTKETRHLINKKFIEKM-KDGAVLVNTARGAIIDEEALVEALKS 269 (336)
T ss_pred E--EEEec------------------CCCHHHHHHhhHHHHHhc-CCCeEEEeccccccccHHHHHHHHhc
Confidence 8 77766 6543 457788888888 88877765545667777887777753
No 240
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=38.42 E-value=52 Score=32.38 Aligned_cols=35 Identities=26% Similarity=0.314 Sum_probs=29.1
Q ss_pred HHHHHHHhhcCCCEEEECCCCChHHHHHHhCCCeEEE
Q 017557 9 PAIEAIVRDIKPNIVFFDFTYWLPSLARKLGIKSIAF 45 (369)
Q Consensus 9 ~~l~~~l~~~~pD~vI~D~~~~~~~~A~~lgiP~v~~ 45 (369)
.++++++++.+||++|.+.. ...+|+++|||++..
T Consensus 362 ~e~~~~l~~~~~dliiG~s~--~~~~a~~~~ip~~~~ 396 (429)
T cd03466 362 FDIESYAKELKIDVLIGNSY--GRRIAEKLGIPLIRI 396 (429)
T ss_pred HHHHHHHHhcCCCEEEECch--hHHHHHHcCCCEEEe
Confidence 57788888889999999872 468899999999864
No 241
>PLN03139 formate dehydrogenase; Provisional
Probab=38.15 E-value=1.6e+02 Score=28.67 Aligned_cols=69 Identities=12% Similarity=0.017 Sum_probs=41.6
Q ss_pred CCceEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhcCCCeeEecccChHHhhcCCC
Q 017557 174 AKSLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGRGFVHGGWVQQQLILKHPS 253 (369)
Q Consensus 174 ~~~~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~ 253 (369)
.+.+-.|.+|.++ ..+++.+...+.+++.. ... ..+...... .++. ......++++.++
T Consensus 199 gktVGIVG~G~IG-------~~vA~~L~afG~~V~~~-d~~--------~~~~~~~~~---~g~~--~~~~l~ell~~sD 257 (386)
T PLN03139 199 GKTVGTVGAGRIG-------RLLLQRLKPFNCNLLYH-DRL--------KMDPELEKE---TGAK--FEEDLDAMLPKCD 257 (386)
T ss_pred CCEEEEEeecHHH-------HHHHHHHHHCCCEEEEE-CCC--------CcchhhHhh---cCce--ecCCHHHHHhhCC
Confidence 3558899999998 67777777788887553 221 111111111 1221 1235677899999
Q ss_pred ccceeecCCCch
Q 017557 254 VGCFVTHCGSGS 265 (369)
Q Consensus 254 ~~~~ItHgG~~s 265 (369)
+ ++.|+-.+.
T Consensus 258 v--V~l~lPlt~ 267 (386)
T PLN03139 258 V--VVINTPLTE 267 (386)
T ss_pred E--EEEeCCCCH
Confidence 8 998875443
No 242
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=38.00 E-value=3.6e+02 Score=25.67 Aligned_cols=33 Identities=12% Similarity=0.016 Sum_probs=20.6
Q ss_pred hCCcccccccccch-----hHHHHHHhhhcce-EEEEeec
Q 017557 272 NECQLVLLPNVGDQ-----IINSRLMGEDLKV-GVEVERG 305 (369)
Q Consensus 272 ~GvP~i~~P~~~DQ-----~~na~~v~~~~g~-G~~l~~~ 305 (369)
++.|+|+-|-+.-. +.-+...... |+ |+.+...
T Consensus 261 ~~lPVi~d~sH~~G~~~~v~~~a~AAvA~-GAdGliIE~H 299 (335)
T PRK08673 261 THLPVIVDPSHATGKRDLVEPLALAAVAA-GADGLIVEVH 299 (335)
T ss_pred cCCCEEEeCCCCCccccchHHHHHHHHHh-CCCEEEEEec
Confidence 46787777765422 2455666666 87 6777655
No 243
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=37.59 E-value=55 Score=30.20 Aligned_cols=73 Identities=15% Similarity=0.110 Sum_probs=46.9
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhcCCCeeEecccChHHhhcCCCccceeecCCCchHH
Q 017557 188 LKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGRGFVHGGWVQQQLILKHPSVGCFVTHCGSGSLS 267 (369)
Q Consensus 188 ~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~ItHgG~~s~~ 267 (369)
.+.++.+++.+++...+...||..+.+.. -.++.++++...+-++|++ ||=....++++
T Consensus 46 s~~~Ra~dL~~a~~d~~i~aI~~~rGG~g-------------------a~rlL~~ld~~~~~~~pK~--~iGySDiTaL~ 104 (282)
T cd07025 46 TDEERAADLNAAFADPEIKAIWCARGGYG-------------------ANRLLPYLDYDLIRANPKI--FVGYSDITALH 104 (282)
T ss_pred CHHHHHHHHHHHhhCCCCCEEEEcCCcCC-------------------HHHhhhhCCHHHHhhCCeE--EEEecHHHHHH
Confidence 34577889999999999999999877532 1112234444444456666 66666666666
Q ss_pred HHHHh--CCccccccc
Q 017557 268 EAMVN--ECQLVLLPN 281 (369)
Q Consensus 268 Eal~~--GvP~i~~P~ 281 (369)
-+++. |++.+-=|.
T Consensus 105 ~~l~~~~g~~t~hGp~ 120 (282)
T cd07025 105 LALYAKTGLVTFHGPM 120 (282)
T ss_pred HHHHHhcCceEEECcc
Confidence 66653 666655554
No 244
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=37.10 E-value=4.8e+02 Score=26.83 Aligned_cols=143 Identities=12% Similarity=0.123 Sum_probs=71.7
Q ss_pred CceEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhcCCCeeEecccChHHhhcCCCc
Q 017557 175 KSLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGRGFVHGGWVQQQLILKHPSV 254 (369)
Q Consensus 175 ~~~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~ 254 (369)
.+.|-|-+||.. +...+++....|+..+.++-+.+-+ .+..|+.+.+.. -+..- . .+
T Consensus 410 ~~~v~i~~gs~s--d~~~~~~~~~~l~~~g~~~~~~v~s-------ahr~~~~~~~~~-----------~~~~~-~--~~ 466 (577)
T PLN02948 410 TPLVGIIMGSDS--DLPTMKDAAEILDSFGVPYEVTIVS-------AHRTPERMFSYA-----------RSAHS-R--GL 466 (577)
T ss_pred CCeEEEEECchh--hHHHHHHHHHHHHHcCCCeEEEEEC-------CccCHHHHHHHH-----------HHHHH-C--CC
Confidence 345666677765 4566667777777777665554433 344555443211 11110 1 22
Q ss_pred cceeecCCCchHHHHHH---hCCcccccccccc--hhHHH-HHHhhhcceEEEEeecCCCCccCHHHHHHHHHHHhccCC
Q 017557 255 GCFVTHCGSGSLSEAMV---NECQLVLLPNVGD--QIINS-RLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAVMDDDS 328 (369)
Q Consensus 255 ~~~ItHgG~~s~~Eal~---~GvP~i~~P~~~D--Q~~na-~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ll~~~~ 328 (369)
++||.=.|+-.-+-.+. .-+|+|++|.-.. -..++ .-+.+. --|+-+..-.-++..++..+...|-.+ .
T Consensus 467 ~v~i~~ag~~~~l~~~~a~~t~~pvi~vp~~~~~~~g~~~l~s~~~~-p~g~pv~~v~i~~~~~aa~~a~~i~~~-~--- 541 (577)
T PLN02948 467 QVIIAGAGGAAHLPGMVASMTPLPVIGVPVKTSHLDGLDSLLSIVQM-PRGVPVATVAIGNATNAGLLAVRMLGA-S--- 541 (577)
T ss_pred CEEEEEcCccccchHHHhhccCCCEEEcCCCCCCCCcHHHHHHHhcC-CCCCeEEEEecCChHHHHHHHHHHHhc-C---
Confidence 34888888654443333 4589999998432 11222 111111 113222111001124555555444222 2
Q ss_pred cchHHHHHHHHHHHHHHhc
Q 017557 329 EVGKDARQNHAELREFLIS 347 (369)
Q Consensus 329 ~~~~~~~~~a~~l~~~~~~ 347 (369)
++.++++.+..++.+++
T Consensus 542 --~~~~~~~~~~~~~~~~~ 558 (577)
T PLN02948 542 --DPDLLDKMEAYQEDMRD 558 (577)
T ss_pred --CHHHHHHHHHHHHHHHH
Confidence 67788888888777774
No 245
>PRK06270 homoserine dehydrogenase; Provisional
Probab=37.09 E-value=2.1e+02 Score=27.14 Aligned_cols=59 Identities=14% Similarity=0.066 Sum_probs=36.6
Q ss_pred ChHHhhcCCCccceee------cCC---CchHHHHHHhCCcccc---cccccchhHHHHHHhhhcceEEEEe
Q 017557 244 QQQLILKHPSVGCFVT------HCG---SGSLSEAMVNECQLVL---LPNVGDQIINSRLMGEDLKVGVEVE 303 (369)
Q Consensus 244 pq~~lL~~~~~~~~It------HgG---~~s~~Eal~~GvP~i~---~P~~~DQ~~na~~v~~~~g~G~~l~ 303 (369)
+-.++|.++++.++|- |+| ..-+.+++.+|+++|+ -|+...-..-.+..++. |..+...
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~-g~~~~~e 150 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKN-GVRFRYE 150 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHc-CCEEEEe
Confidence 4566776665555665 443 3345789999999999 47744333334445566 7666554
No 246
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=36.90 E-value=1.1e+02 Score=31.53 Aligned_cols=28 Identities=18% Similarity=0.341 Sum_probs=22.4
Q ss_pred CccceeecCCC------chHHHHHHhCCcccccc
Q 017557 253 SVGCFVTHCGS------GSLSEAMVNECQLVLLP 280 (369)
Q Consensus 253 ~~~~~ItHgG~------~s~~Eal~~GvP~i~~P 280 (369)
+.+++++|.|- +++.+|...++|+|.+-
T Consensus 68 ~~gv~~~t~GPG~~n~~~gi~~A~~~~~Pvl~I~ 101 (588)
T PRK07525 68 RMGMVIGQNGPGITNFVTAVATAYWAHTPVVLVT 101 (588)
T ss_pred CCEEEEEcCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 34459999884 47779999999999995
No 247
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=36.66 E-value=42 Score=29.04 Aligned_cols=31 Identities=35% Similarity=0.389 Sum_probs=25.5
Q ss_pred CCCEEE-ECC--CCChHHHHHHhCCCeEEEeCch
Q 017557 19 KPNIVF-FDF--TYWLPSLARKLGIKSIAFVTVS 49 (369)
Q Consensus 19 ~pD~vI-~D~--~~~~~~~A~~lgiP~v~~~~~~ 49 (369)
.||+|| .|. ...+..=|.++|||.+++..+.
T Consensus 127 ~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn 160 (193)
T cd01425 127 LPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTN 160 (193)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEecCC
Confidence 699875 677 6677888999999999998665
No 248
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=36.65 E-value=48 Score=30.28 Aligned_cols=39 Identities=5% Similarity=0.196 Sum_probs=23.4
Q ss_pred ceEEEeeCCCccCCHH-HHHHHHHHHH--hcCCcEEEEECCC
Q 017557 176 SLIFCALGSECVLKKD-QFQELILGFE--LTGLPFFAALKPP 214 (369)
Q Consensus 176 ~~v~vs~GS~~~~~~~-~~~~~~~~l~--~~~~~~i~~~~~~ 214 (369)
.++++||||......+ -+..+.+.++ .+++++-|++.+.
T Consensus 2 AIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS~ 43 (262)
T PF06180_consen 2 AILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTSR 43 (262)
T ss_dssp EEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-H
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchHH
Confidence 4789999998764433 5666666665 3688888888663
No 249
>PHA02754 hypothetical protein; Provisional
Probab=36.40 E-value=67 Score=21.79 Aligned_cols=19 Identities=32% Similarity=0.532 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHhcCC
Q 017557 331 GKDARQNHAELREFLISPG 349 (369)
Q Consensus 331 ~~~~~~~a~~l~~~~~~~~ 349 (369)
++.|++.++++++.+-++|
T Consensus 13 eK~Fke~MRelkD~LSe~G 31 (67)
T PHA02754 13 EKDFKEAMRELKDILSEAG 31 (67)
T ss_pred HhHHHHHHHHHHHHHhhCc
Confidence 6889999999999998765
No 250
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=36.30 E-value=3e+02 Score=24.29 Aligned_cols=148 Identities=16% Similarity=0.111 Sum_probs=70.4
Q ss_pred cCcceeEeCCCCCCCCCCCchhHHHhhhccCCCCceEEEeeCCCccCCHHHH-HHHHHHHHhcCCcEEEEECCCCCCCcc
Q 017557 142 FEKRVILAGPVLPEPPASVLEEEFEMLFSSFKAKSLIFCALGSECVLKKDQF-QELILGFELTGLPFFAALKPPTGHDTI 220 (369)
Q Consensus 142 ~~~~~~~vGp~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~-~~~~~~l~~~~~~~i~~~~~~~~~~~~ 220 (369)
.++++...+.+..... ..-.+++.+.+...+-+++-+.............. ..+.+.+++.+.++.+-++...
T Consensus 68 ~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~H~g~~~----- 141 (273)
T PF04909_consen 68 HPDRFIGFAAIPPPDP-EDAVEELERALQELGFRGVKLHPDLGGFDPDDPRLDDPIFEAAEELGLPVLIHTGMTG----- 141 (273)
T ss_dssp STTTEEEEEEETTTSH-HHHHHHHHHHHHTTTESEEEEESSETTCCTTSGHCHHHHHHHHHHHT-EEEEEESHTH-----
T ss_pred cCCCEEEEEEecCCCc-hhHHHHHHHhccccceeeeEecCCCCccccccHHHHHHHHHHHHhhccceeeeccccc-----
Confidence 4555666555544321 11245666666544433333222211122333333 4888888888988777654110
Q ss_pred ccCCchhHHHHhcCCCeeEecccChHHhhcCCCccceeecCCCc--hHHHHHHh--CCcccc------------cccccc
Q 017557 221 ESALPEGFEERVKGRGFVHGGWVQQQLILKHPSVGCFVTHCGSG--SLSEAMVN--ECQLVL------------LPNVGD 284 (369)
Q Consensus 221 ~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~ItHgG~~--s~~Eal~~--GvP~i~------------~P~~~D 284 (369)
....+.... + ...=...+.++|++++++.|+|.. ...+++.. ..|-+. .+....
T Consensus 142 ~~~~~~~~~------~----~~~~~~~~~~~P~l~ii~~H~G~~~~~~~~~~~l~~~~~nvy~d~s~~~~~~~~~~~~~~ 211 (273)
T PF04909_consen 142 FPDAPSDPA------D----PEELEELLERFPDLRIILAHLGGPFPWWEEALRLLDRFPNVYVDLSGIPPFWYFWPPSFD 211 (273)
T ss_dssp HHHHHHHHH------H----HHHHTTHHHHSTTSEEEESGGGTTHHHHHHHHHHHHHHTTEEEECHSHHSSEEEETTHHC
T ss_pred hhhhhHHHH------H----HHHHHHHHHHhcCCeEEEecCcccchhHHHHHHHHHhCCcccccccccccccccCccccc
Confidence 000000000 0 000012356799999999999999 34333221 223222 222334
Q ss_pred hhHHHHHHhhhcceEEEEeecC
Q 017557 285 QIINSRLMGEDLKVGVEVERGD 306 (369)
Q Consensus 285 Q~~na~~v~~~~g~G~~l~~~~ 306 (369)
...-.+.+... |.-..+-.++
T Consensus 212 ~~~l~~~~~~~-g~drilfGSD 232 (273)
T PF04909_consen 212 RPFLRRAVDEF-GPDRILFGSD 232 (273)
T ss_dssp HHHHHHHHHHH-TGGGEEEE--
T ss_pred HHHHHHHHHHh-CCceEEecCC
Confidence 45555666666 7766666554
No 251
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=36.29 E-value=55 Score=28.17 Aligned_cols=39 Identities=10% Similarity=-0.067 Sum_probs=28.1
Q ss_pred cHHHHHHHHhhcCCCEEE-ECC--CCChHHHHHHhCCCeEEEe
Q 017557 7 TEPAIEAIVRDIKPNIVF-FDF--TYWLPSLARKLGIKSIAFV 46 (369)
Q Consensus 7 ~~~~l~~~l~~~~pD~vI-~D~--~~~~~~~A~~lgiP~v~~~ 46 (369)
+...+.+.+ +.++|+|+ .|. .++|..+|..+|+|++...
T Consensus 40 ~~~~l~~~~-~~~~D~Ivg~e~~Gi~lA~~vA~~l~~p~~~~r 81 (187)
T PRK12560 40 TAKEIIKYI-DKDIDKIVTEEDKGAPLATPVSLLSGKPLAMAR 81 (187)
T ss_pred HHHHHHHHh-CCCCCEEEEEccccHHHHHHHHHhhCCCEEEec
Confidence 333444445 45899998 455 7789999999999987753
No 252
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=36.02 E-value=59 Score=29.03 Aligned_cols=38 Identities=24% Similarity=0.202 Sum_probs=24.7
Q ss_pred HHHHHHhhcCCCEEEECC-CCC---hHHHHHHhCCCeEEEeCc
Q 017557 10 AIEAIVRDIKPNIVFFDF-TYW---LPSLARKLGIKSIAFVTV 48 (369)
Q Consensus 10 ~l~~~l~~~~pD~vI~D~-~~~---~~~~A~~lgiP~v~~~~~ 48 (369)
.+++++ +.+||+||... ... ...+.+.+|||++.+...
T Consensus 66 n~E~i~-~l~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~~ 107 (262)
T cd01147 66 NYEKIA-ALKPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDGG 107 (262)
T ss_pred CHHHHH-hcCCCEEEEecCCccchhHHHHHHhhCCCEEEEecC
Confidence 444444 57899999876 332 233445589999887643
No 253
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=35.88 E-value=57 Score=28.41 Aligned_cols=39 Identities=26% Similarity=0.359 Sum_probs=26.5
Q ss_pred cHHHHHHHHhhcCCCEEEECC-C------CChHHHHHHhCCCeEEE
Q 017557 7 TEPAIEAIVRDIKPNIVFFDF-T------YWLPSLARKLGIKSIAF 45 (369)
Q Consensus 7 ~~~~l~~~l~~~~pD~vI~D~-~------~~~~~~A~~lgiP~v~~ 45 (369)
....+.+++++..||+|+.-. . ..+..+|.+||.|+++=
T Consensus 96 ~a~al~~~i~~~~p~lVL~~~t~~~~~grdlaprlAarLga~lvsd 141 (202)
T cd01714 96 TAKALAAAIKKIGVDLILTGKQSIDGDTGQVGPLLAELLGWPQITY 141 (202)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCcccCCcCcHHHHHHHHhCCCccce
Confidence 344566666666788887765 4 46777888888887663
No 254
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=35.59 E-value=49 Score=32.63 Aligned_cols=35 Identities=11% Similarity=0.188 Sum_probs=29.1
Q ss_pred HHHHHHHhhcCCCEEEECCCCChHHHHHHhCCCeEEE
Q 017557 9 PAIEAIVRDIKPNIVFFDFTYWLPSLARKLGIKSIAF 45 (369)
Q Consensus 9 ~~l~~~l~~~~pD~vI~D~~~~~~~~A~~lgiP~v~~ 45 (369)
.++++++++.+||++|... ....+|+++|||++-+
T Consensus 363 ~~l~~~i~~~~~dliig~s--~~k~~A~~l~ip~ir~ 397 (432)
T TIGR01285 363 EDLEDLACAAGADLLITNS--HGRALAQRLALPLVRA 397 (432)
T ss_pred HHHHHHHhhcCCCEEEECc--chHHHHHHcCCCEEEe
Confidence 5778888888999999887 3377999999999864
No 255
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=35.59 E-value=46 Score=29.90 Aligned_cols=36 Identities=8% Similarity=0.098 Sum_probs=25.9
Q ss_pred HHHHHHhhcCCCEEEE-CC--CCChHHHHHHhCCCeEEE
Q 017557 10 AIEAIVRDIKPNIVFF-DF--TYWLPSLARKLGIKSIAF 45 (369)
Q Consensus 10 ~l~~~l~~~~pD~vI~-D~--~~~~~~~A~~lgiP~v~~ 45 (369)
.+.+.+++..+|+|+. +. .++|..+|..+|+|.+..
T Consensus 102 ~la~~~~~~~~D~Vvtv~~~GI~lA~~lA~~L~~p~vi~ 140 (238)
T PRK08558 102 VVAERFMGLRVDVVLTAATDGIPLAVAIASYFGADLVYA 140 (238)
T ss_pred HHHHHccCCCCCEEEEECcccHHHHHHHHHHHCcCEEEE
Confidence 3333444447899874 33 778999999999998875
No 256
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=35.20 E-value=1.9e+02 Score=27.36 Aligned_cols=105 Identities=14% Similarity=0.125 Sum_probs=69.0
Q ss_pred CceEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhcCCCeeEecccChHHhhcCCCc
Q 017557 175 KSLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGRGFVHGGWVQQQLILKHPSV 254 (369)
Q Consensus 175 ~~~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~ 254 (369)
+.+-.|.+|.++ .++++-++..+.+++..-.... .... .-..+........+|+.+++
T Consensus 143 kTvGIiG~G~IG-------~~va~~l~afgm~v~~~d~~~~----------~~~~-----~~~~~~~~~~Ld~lL~~sDi 200 (324)
T COG0111 143 KTVGIIGLGRIG-------RAVAKRLKAFGMKVIGYDPYSP----------RERA-----GVDGVVGVDSLDELLAEADI 200 (324)
T ss_pred CEEEEECCCHHH-------HHHHHHHHhCCCeEEEECCCCc----------hhhh-----ccccceecccHHHHHhhCCE
Confidence 558899999998 6677777777888776643211 0000 00112244567889999999
Q ss_pred cceeecCCCchHHHHHHhCCccccccccc--chhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHH
Q 017557 255 GCFVTHCGSGSLSEAMVNECQLVLLPNVG--DQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKA 322 (369)
Q Consensus 255 ~~~ItHgG~~s~~Eal~~GvP~i~~P~~~--DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ 322 (369)
++.|. |+.. ....|++.+... +-|..+-.-..++.+..+.|.+++++
T Consensus 201 --v~lh~------------------PlT~eT~g~i~~~~~a~M-K~gailIN~aRG~vVde~aL~~AL~~ 249 (324)
T COG0111 201 --LTLHL------------------PLTPETRGLINAEELAKM-KPGAILINAARGGVVDEDALLAALDS 249 (324)
T ss_pred --EEEcC------------------CCCcchhcccCHHHHhhC-CCCeEEEECCCcceecHHHHHHHHHc
Confidence 88886 7765 457788888877 65544433234678888889888876
No 257
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=35.18 E-value=44 Score=21.36 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=18.4
Q ss_pred CHHHHHHHHHHHhccCCcchHHHHHHHHHH
Q 017557 312 TRDGVCKAVKAVMDDDSEVGKDARQNHAEL 341 (369)
Q Consensus 312 ~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l 341 (369)
|++.|.+||..+.++ .-++++.|++.
T Consensus 1 tee~l~~Ai~~v~~g----~~S~r~AA~~y 26 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNG----KMSIRKAAKKY 26 (45)
T ss_dssp -HHHHHHHHHHHHTT----SS-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhC----CCCHHHHHHHH
Confidence 578999999999871 26777777654
No 258
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=35.13 E-value=77 Score=24.99 Aligned_cols=38 Identities=18% Similarity=0.245 Sum_probs=27.5
Q ss_pred HHHHHHhhcCCCEEEECC-CCC---hHHHHHHhC-CCeEEEeC
Q 017557 10 AIEAIVRDIKPNIVFFDF-TYW---LPSLARKLG-IKSIAFVT 47 (369)
Q Consensus 10 ~l~~~l~~~~pD~vI~D~-~~~---~~~~A~~lg-iP~v~~~~ 47 (369)
.+..++++.+||+|.+-. .+. +..+++..| +|.+....
T Consensus 65 ~l~k~ik~~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~h 107 (139)
T PF13477_consen 65 RLRKIIKKEKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVH 107 (139)
T ss_pred HHHHHhccCCCCEEEEecCChHHHHHHHHHHHcCCCCEEEEec
Confidence 678888889999998776 442 334567778 88886543
No 259
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=34.70 E-value=62 Score=27.03 Aligned_cols=27 Identities=26% Similarity=0.487 Sum_probs=21.1
Q ss_pred ccceeecCCCc------hHHHHHHhCCcccccc
Q 017557 254 VGCFVTHCGSG------SLSEAMVNECQLVLLP 280 (369)
Q Consensus 254 ~~~~ItHgG~~------s~~Eal~~GvP~i~~P 280 (369)
.+++++|+|-| ++.||...++|+|++.
T Consensus 60 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 92 (162)
T cd07038 60 LGALVTTYGVGELSALNGIAGAYAEHVPVVHIV 92 (162)
T ss_pred CEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEe
Confidence 44478877744 6778999999999995
No 260
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=34.50 E-value=2.5e+02 Score=27.52 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=21.4
Q ss_pred ccceeecCCC------chHHHHHHhCCccccc
Q 017557 254 VGCFVTHCGS------GSLSEAMVNECQLVLL 279 (369)
Q Consensus 254 ~~~~ItHgG~------~s~~Eal~~GvP~i~~ 279 (369)
.+++++|+|- +.++||.+.++|+|++
T Consensus 64 ~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i 95 (432)
T TIGR00173 64 PVAVVCTSGTAVANLLPAVIEASYSGVPLIVL 95 (432)
T ss_pred CEEEEECCcchHhhhhHHHHHhcccCCcEEEE
Confidence 4448888884 4778999999999999
No 261
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.24 E-value=50 Score=30.78 Aligned_cols=55 Identities=9% Similarity=0.175 Sum_probs=39.1
Q ss_pred hhcCCCccceeecCCCchHHHHHH----hCCcccccccccchhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHHH
Q 017557 248 ILKHPSVGCFVTHCGSGSLSEAMV----NECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAV 323 (369)
Q Consensus 248 lL~~~~~~~~ItHgG~~s~~Eal~----~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~l 323 (369)
+...+++ +|+=||=||+..+.. .++|++++-.. ..|... + ++.+++.++++++
T Consensus 65 ~~~~~D~--vi~lGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGFL~---~----~~~~~~~~~l~~i 121 (296)
T PRK04539 65 LGQYCDL--VAVLGGDGTFLSVAREIAPRAVPIIGINQG--------------HLGFLT---Q----IPREYMTDKLLPV 121 (296)
T ss_pred cCcCCCE--EEEECCcHHHHHHHHHhcccCCCEEEEecC--------------CCeEee---c----cCHHHHHHHHHHH
Confidence 3345666 999999999999865 47898887421 133333 2 5678888888888
Q ss_pred hc
Q 017557 324 MD 325 (369)
Q Consensus 324 l~ 325 (369)
++
T Consensus 122 ~~ 123 (296)
T PRK04539 122 LE 123 (296)
T ss_pred Hc
Confidence 86
No 262
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.21 E-value=44 Score=31.32 Aligned_cols=53 Identities=13% Similarity=0.171 Sum_probs=37.1
Q ss_pred cCCCccceeecCCCchHHHHHHh----CCcccccccccchhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHHHhc
Q 017557 250 KHPSVGCFVTHCGSGSLSEAMVN----ECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAVMD 325 (369)
Q Consensus 250 ~~~~~~~~ItHgG~~s~~Eal~~----GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ll~ 325 (369)
..+++ +|+=||=||+..+... ++|++++-.. ..|... + ++.+++.++++++++
T Consensus 67 ~~~Dl--vi~iGGDGTlL~aar~~~~~~iPilGIN~G--------------~lGFLt---~----~~~~~~~~~l~~l~~ 123 (305)
T PRK02649 67 SSMKF--AIVLGGDGTVLSAARQLAPCGIPLLTINTG--------------HLGFLT---E----AYLNQLDEAIDQVLA 123 (305)
T ss_pred cCcCE--EEEEeCcHHHHHHHHHhcCCCCcEEEEeCC--------------CCcccc---c----CCHHHHHHHHHHHHc
Confidence 34566 9999999999998764 7898888421 122222 2 566788888888876
No 263
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=34.15 E-value=69 Score=29.19 Aligned_cols=33 Identities=33% Similarity=0.381 Sum_probs=26.2
Q ss_pred CCCEEE-ECC--CCChHHHHHHhCCCeEEEeCchHH
Q 017557 19 KPNIVF-FDF--TYWLPSLARKLGIKSIAFVTVSPA 51 (369)
Q Consensus 19 ~pD~vI-~D~--~~~~~~~A~~lgiP~v~~~~~~~~ 51 (369)
.||+|| .|. ...+..=|.++|||++++.-+...
T Consensus 157 ~Pd~iii~d~~~~~~ai~Ea~kl~IPiIaivDTn~d 192 (258)
T PRK05299 157 LPDALFVVDPNKEHIAVKEARKLGIPVVAIVDTNCD 192 (258)
T ss_pred CCCEEEEeCCCccHHHHHHHHHhCCCEEEEeeCCCC
Confidence 599875 777 667888899999999998865543
No 264
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=33.92 E-value=1.3e+02 Score=25.48 Aligned_cols=47 Identities=11% Similarity=0.027 Sum_probs=31.6
Q ss_pred HhCCcccccccccchhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHH
Q 017557 271 VNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKA 322 (369)
Q Consensus 271 ~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ 322 (369)
..|||---+=++.|+..|...+.+. |+--..-... +|.+.+.+.+++
T Consensus 119 ~tgI~y~eMlFFDDe~~N~~~v~~l-GV~~v~v~~G----lt~~~~~~gL~~ 165 (169)
T PF12689_consen 119 KTGIPYEEMLFFDDESRNIEVVSKL-GVTCVLVPDG----LTWDEFERGLEK 165 (169)
T ss_dssp HH---GGGEEEEES-HHHHHHHHTT-T-EEEE-SSS------HHHHHHHHHH
T ss_pred hcCCChhHEEEecCchhcceeeEec-CcEEEEeCCC----CCHHHHHHHHHH
Confidence 4777777766788999999998887 9988777765 999999888864
No 265
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=33.89 E-value=37 Score=28.25 Aligned_cols=42 Identities=26% Similarity=0.433 Sum_probs=30.7
Q ss_pred hcHHHHHHHHhhcCCCEEEECC----CCChHHHHHHhCCCeEEEeC
Q 017557 6 LTEPAIEAIVRDIKPNIVFFDF----TYWLPSLARKLGIKSIAFVT 47 (369)
Q Consensus 6 ~~~~~l~~~l~~~~pD~vI~D~----~~~~~~~A~~lgiP~v~~~~ 47 (369)
.....+.+++++.+||+|+.-. ...+..+|.+||.|+++-..
T Consensus 77 ~~a~~l~~~~~~~~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v~ 122 (164)
T PF01012_consen 77 AYADALAELIKEEGPDLVLFGSTSFGRDLAPRLAARLGAPLVTDVT 122 (164)
T ss_dssp HHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHHHT-EEEEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEcCcCCCCcHHHHHHHHhCCCccceEE
Confidence 3455677888888999998765 33578899999999998654
No 266
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.81 E-value=55 Score=30.44 Aligned_cols=55 Identities=5% Similarity=0.260 Sum_probs=38.5
Q ss_pred hhcCCCccceeecCCCchHHHHHH----hCCcccccccccchhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHHH
Q 017557 248 ILKHPSVGCFVTHCGSGSLSEAMV----NECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAV 323 (369)
Q Consensus 248 lL~~~~~~~~ItHgG~~s~~Eal~----~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~l 323 (369)
+...+++ +|+=||=||+..+.. .++|++++-.. ..|... + ++.+++.++++++
T Consensus 61 ~~~~~dl--vi~lGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGFLt---~----~~~~~~~~~l~~i 117 (292)
T PRK01911 61 LDGSADM--VISIGGDGTFLRTATYVGNSNIPILGINTG--------------RLGFLA---T----VSKEEIEETIDEL 117 (292)
T ss_pred cccCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEecC--------------CCCccc---c----cCHHHHHHHHHHH
Confidence 3345667 999999999998877 37888887431 122222 2 5678888888888
Q ss_pred hc
Q 017557 324 MD 325 (369)
Q Consensus 324 l~ 325 (369)
++
T Consensus 118 ~~ 119 (292)
T PRK01911 118 LN 119 (292)
T ss_pred Hc
Confidence 86
No 267
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=33.74 E-value=68 Score=29.05 Aligned_cols=41 Identities=24% Similarity=0.324 Sum_probs=32.1
Q ss_pred HHHHHHHHhhcCCCEEEECC-CCCh-------HHHHHHhCCCeEEEeCch
Q 017557 8 EPAIEAIVRDIKPNIVFFDF-TYWL-------PSLARKLGIKSIAFVTVS 49 (369)
Q Consensus 8 ~~~l~~~l~~~~pD~vI~D~-~~~~-------~~~A~~lgiP~v~~~~~~ 49 (369)
...+.+++++.++++|| |. .|+| ..+|+.+|||++-|--..
T Consensus 55 ~~~l~~~l~~~~i~~vI-DATHPfA~~is~na~~a~~~~~ipylR~eRp~ 103 (249)
T PF02571_consen 55 EEGLAEFLRENGIDAVI-DATHPFAAEISQNAIEACRELGIPYLRFERPS 103 (249)
T ss_pred HHHHHHHHHhCCCcEEE-ECCCchHHHHHHHHHHHHhhcCcceEEEEcCC
Confidence 46788999999999876 65 6664 457889999999986544
No 268
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=33.69 E-value=81 Score=31.08 Aligned_cols=37 Identities=11% Similarity=0.079 Sum_probs=29.0
Q ss_pred HHHHHHHHhhcCCCEEEECCCCChHHHHHHhCCCeEEEe
Q 017557 8 EPAIEAIVRDIKPNIVFFDFTYWLPSLARKLGIKSIAFV 46 (369)
Q Consensus 8 ~~~l~~~l~~~~pD~vI~D~~~~~~~~A~~lgiP~v~~~ 46 (369)
..++++.+++.+||++|... ....+|+++|||++.+.
T Consensus 366 ~~e~~~~i~~~~pDliiG~s--~~~~~a~~~gip~v~~~ 402 (435)
T cd01974 366 LWHLRSLLFTEPVDLLIGNT--YGKYIARDTDIPLVRFG 402 (435)
T ss_pred HHHHHHHHhhcCCCEEEECc--cHHHHHHHhCCCEEEee
Confidence 34567777778999999876 35789999999998654
No 269
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=33.65 E-value=2.4e+02 Score=26.03 Aligned_cols=116 Identities=12% Similarity=0.078 Sum_probs=68.8
Q ss_pred HHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhcCCCeeEecccChHHhhcCCCccceeecCCCchHHHHHHhC
Q 017557 194 QELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGRGFVHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNE 273 (369)
Q Consensus 194 ~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~G 273 (369)
.++++.|+..+..+++..+.. .-+|+.|.+..+.+- +==||++ .=...|.+.+..|+..|
T Consensus 150 ~~~~~~l~~~~~Dlivlagym-------~il~~~~l~~~~~~i-----------INiHpSL--LP~f~G~~p~~~ai~~G 209 (280)
T TIGR00655 150 KRQLELLKQYQVDLVVLAKYM-------QILSPDFVKRYPNKI-----------INIHHSF--LPAFIGANPYQRAYERG 209 (280)
T ss_pred HHHHHHHHHhCCCEEEEeCch-------hhCCHHHHhhccCCE-----------EEecCCc--CCCCCCcCHHHHHHHcC
Confidence 346666666667777776542 445655554332211 1135555 55567899999999999
Q ss_pred Cccccccccc--chhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Q 017557 274 CQLVLLPNVG--DQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAVMDDDSEVGKDARQNHAELRE 343 (369)
Q Consensus 274 vP~i~~P~~~--DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~ 343 (369)
+...++-.+. +..+.+.-+.+. -+.+..+ -|.++|.+.+.++- -.-|-+..+.+.+
T Consensus 210 ~k~tG~TvH~V~e~lD~GpII~Q~---~v~I~~~-----dt~~~L~~ri~~~E------~~~~~~ai~~~~~ 267 (280)
T TIGR00655 210 VKIIGATAHYVTEELDEGPIIEQD---VVRVDHT-----DNVEDLIRAGRDIE------KVVLARAVKLHLE 267 (280)
T ss_pred CCeEEEEEEEEcCCCcCCCeEEEE---EEEcCCC-----CCHHHHHHHHHHHH------HHHHHHHHHHHHh
Confidence 9998887653 333444333332 2333333 58899988887654 3556666555543
No 270
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=33.54 E-value=59 Score=31.93 Aligned_cols=37 Identities=19% Similarity=0.429 Sum_probs=30.0
Q ss_pred HHHHHHHhhcCCCEEEECCCCChHHHHHHhCCCeEEE
Q 017557 9 PAIEAIVRDIKPNIVFFDFTYWLPSLARKLGIKSIAF 45 (369)
Q Consensus 9 ~~l~~~l~~~~pD~vI~D~~~~~~~~A~~lgiP~v~~ 45 (369)
.++.+++++.+||++|.-...+....|.++|+|++.+
T Consensus 363 ~e~~~~l~~~~pDl~i~~~~~~~~~~~~~~gip~~~~ 399 (426)
T cd01972 363 YQFYNLLKRVKPDFIIFRHGGLFPDATVYLGIPVVPL 399 (426)
T ss_pred HHHHHHHHHhCCCEEEEcCCCccHHHHHhcCCCEEec
Confidence 4688889999999999866455566678899999886
No 271
>PRK13840 sucrose phosphorylase; Provisional
Probab=33.40 E-value=2.2e+02 Score=28.65 Aligned_cols=131 Identities=9% Similarity=0.080 Sum_probs=75.6
Q ss_pred hHHHhhhccCCCCceEEEee----CC----------CccCCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhH
Q 017557 163 EEFEMLFSSFKAKSLIFCAL----GS----------ECVLKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGF 228 (369)
Q Consensus 163 ~~~~~~l~~~~~~~~v~vs~----GS----------~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~ 228 (369)
..+.+|+...+.+.+-|+.- |= .+.++.++...+++.+...+..+.+...+........-++.-++
T Consensus 270 ~~L~~~l~~~p~~~~n~L~~HDgIgl~d~~~~~~~~~gll~~~e~~~l~~~~~~~~~~~~~~~~~~~as~~~~Y~in~~~ 349 (495)
T PRK13840 270 EALAHWLEIRPRNAVTVLDTHDGIGIIDVGADDRGLAGLLPDEQIDNLVETIHANSHGESRQATGAAASNLDLYQVNCTY 349 (495)
T ss_pred hHHHHHHHhCCCccEEeeecCCCCCcccccccccccccCCCHHHHHHHHHHHHHhccCceeecCCcccccccchhhhccH
Confidence 45677888877655433331 11 13356778888888888777776676543310000111222233
Q ss_pred HHHhcCCCeeEecccChHHhhcCCCccceeecCCCchHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecCCC
Q 017557 229 EERVKGRGFVHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDED 308 (369)
Q Consensus 229 ~~~~~~~~~~v~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~ 308 (369)
...+.... +..+|+|+= --..-|||+|-+.-.--+...-..+++. |.|..+.+..
T Consensus 350 ~~Al~~~d--------~r~lla~ai--------------~~~~~GiP~iY~~~ll~~~ND~~~~~~t-~~~R~inR~~-- 404 (495)
T PRK13840 350 YDALGRND--------QDYLAARAI--------------QFFAPGIPQVYYVGLLAGPNDMELLART-NVGRDINRHY-- 404 (495)
T ss_pred HHHhcCCc--------HHHHHHHHH--------------HHcCCCcceeeechhhccCccHHHHHhc-CCCcccCCCC--
Confidence 33222111 223333322 1344688888877555555556677778 9999999987
Q ss_pred CccCHHHHHHHH
Q 017557 309 GLFTRDGVCKAV 320 (369)
Q Consensus 309 ~~~~~~~l~~ai 320 (369)
++.+++.+++
T Consensus 405 --~~~~~~~~~l 414 (495)
T PRK13840 405 --YSTAEIDEAL 414 (495)
T ss_pred --CCHHHHHHHH
Confidence 8998888875
No 272
>PRK13243 glyoxylate reductase; Reviewed
Probab=33.23 E-value=1.6e+02 Score=27.94 Aligned_cols=66 Identities=12% Similarity=0.095 Sum_probs=41.8
Q ss_pred CceEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhcCCCeeEecccChHHhhcCCCc
Q 017557 175 KSLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGRGFVHGGWVQQQLILKHPSV 254 (369)
Q Consensus 175 ~~~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~ 254 (369)
+.+..|.+|.++ ..+++.+...+.+++.. .... . ...... .++ .+....++++.+++
T Consensus 151 ktvgIiG~G~IG-------~~vA~~l~~~G~~V~~~-d~~~------~---~~~~~~---~~~---~~~~l~ell~~aDi 207 (333)
T PRK13243 151 KTIGIIGFGRIG-------QAVARRAKGFGMRILYY-SRTR------K---PEAEKE---LGA---EYRPLEELLRESDF 207 (333)
T ss_pred CEEEEECcCHHH-------HHHHHHHHHCCCEEEEE-CCCC------C---hhhHHH---cCC---EecCHHHHHhhCCE
Confidence 568999999998 67778777778876543 2210 0 011000 121 34567788999998
Q ss_pred cceeecCCCch
Q 017557 255 GCFVTHCGSGS 265 (369)
Q Consensus 255 ~~~ItHgG~~s 265 (369)
++.|.-.+.
T Consensus 208 --V~l~lP~t~ 216 (333)
T PRK13243 208 --VSLHVPLTK 216 (333)
T ss_pred --EEEeCCCCh
Confidence 998886543
No 273
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=33.19 E-value=64 Score=24.79 Aligned_cols=37 Identities=11% Similarity=0.151 Sum_probs=29.7
Q ss_pred HHHHHHHhhcCCCEEEECC-C-------CChHHHHHHhCCCeEEE
Q 017557 9 PAIEAIVRDIKPNIVFFDF-T-------YWLPSLARKLGIKSIAF 45 (369)
Q Consensus 9 ~~l~~~l~~~~pD~vI~D~-~-------~~~~~~A~~lgiP~v~~ 45 (369)
+.+.+.+++.++|+||.-+ . .+....|-.+|||+++.
T Consensus 57 ~~i~~~i~~~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T~ 101 (110)
T cd01424 57 PNIVDLIKNGEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFTT 101 (110)
T ss_pred hhHHHHHHcCCeEEEEECCCCCccCccHHHHHHHHHHhCCCEEec
Confidence 6788888888999999854 2 44677899999999963
No 274
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=33.18 E-value=88 Score=33.09 Aligned_cols=50 Identities=12% Similarity=0.140 Sum_probs=36.2
Q ss_pred hhcHHHHHHHHhhcCCCEEEECC--CCChHHHHHHhCCCeEEEeCchHHHHHh
Q 017557 5 DLTEPAIEAIVRDIKPNIVFFDF--TYWLPSLARKLGIKSIAFVTVSPATVGY 55 (369)
Q Consensus 5 ~~~~~~l~~~l~~~~pD~vI~D~--~~~~~~~A~~lgiP~v~~~~~~~~~~~~ 55 (369)
+.....++++++ .+||+|+.|. .+.+...|+++++|.+.+..-.+-..++
T Consensus 402 ~~~~~~~~~l~~-~~p~~i~~D~HP~y~st~~a~~~~~~~~~vQHH~AH~~a~ 453 (711)
T TIGR00143 402 KEALNFFLRIYD-FEPQDIVCDLHPQYNTTQYAEELSLPVLRVQHHHAHALAV 453 (711)
T ss_pred HHHHHHHHHHHC-CCCCEEEEeCCCCchhHHHHHHcCCCeeeeeHHHHHHHHH
Confidence 334444444443 4799999998 7788889999999999988766555443
No 275
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=33.11 E-value=4e+02 Score=25.60 Aligned_cols=107 Identities=18% Similarity=0.146 Sum_probs=67.3
Q ss_pred CCCeeEecccChHHhh-cCCCccceeecCC---Cc-hHHHHHHhCCcccccccccchhHHHHHHhhhcceEEEEeecCCC
Q 017557 234 GRGFVHGGWVQQQLIL-KHPSVGCFVTHCG---SG-SLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDED 308 (369)
Q Consensus 234 ~~~~~v~~~~pq~~lL-~~~~~~~~ItHgG---~~-s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~ 308 (369)
.....+.+-.+--..| .|.++ +|+|== .| ...|++|-|-|.| .|+..+.+ +|..-+.
T Consensus 252 ~gkasfegR~~~p~fla~~tD~--VvSHqWeN~lNYlY~daLyggYPLV---------HNS~~l~d---~GYYY~~---- 313 (364)
T PF10933_consen 252 DGKASFEGRFDFPDFLAQHTDA--VVSHQWENPLNYLYYDALYGGYPLV---------HNSPLLKD---VGYYYPD---- 313 (364)
T ss_pred cCeeEEeeecChHHHHHhCCCE--EEeccccchhhHHHHHHHhcCCCcc---------cCcchhcc---cCcCCCC----
Confidence 4455566666665544 47777 999953 33 3569999999997 46666664 6766665
Q ss_pred CccCHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 017557 309 GLFTRDGVCKAVKAVMDDDSEVGKDARQNHAELREFLISPGLENSYVDGFVQEL 362 (369)
Q Consensus 309 ~~~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~v~~l 362 (369)
+...+=.+++.+.+..-+..-+.|+++|+++=..+ .+.....++.+.+.|
T Consensus 314 --fD~~~G~r~L~~A~~~HD~~~~~Y~~ra~~~l~~~--~p~n~~nv~~y~~~L 363 (364)
T PF10933_consen 314 --FDAFEGARQLLRAIREHDADLDAYRARARRLLDRL--SPENPANVRAYEARL 363 (364)
T ss_pred --ccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhh--CCCCHHHHHHHHHhh
Confidence 33444344444444321333688999999886665 455566677666554
No 276
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=32.63 E-value=4.1e+02 Score=25.89 Aligned_cols=139 Identities=10% Similarity=0.205 Sum_probs=74.7
Q ss_pred ceEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCC-chhHHHHhcCCCeeEecc-------cChHH
Q 017557 176 SLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGHDTIESAL-PEGFEERVKGRGFVHGGW-------VQQQL 247 (369)
Q Consensus 176 ~~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~l-p~~~~~~~~~~~~~v~~~-------~pq~~ 247 (369)
.+++.--||.+. .....+++.|.+.++.+-++..... ..-+ |..+. ......++..-| ..+.+
T Consensus 8 ~IllgvTGsiaa---~k~~~lv~~L~~~g~~V~vv~T~~A-----~~fi~~~~l~-~l~~~~V~~~~~~~~~~~~~~hi~ 78 (399)
T PRK05579 8 RIVLGVSGGIAA---YKALELVRRLRKAGADVRVVMTEAA-----KKFVTPLTFQ-ALSGNPVSTDLWDPAAEAAMGHIE 78 (399)
T ss_pred eEEEEEeCHHHH---HHHHHHHHHHHhCCCEEEEEECHhH-----HHHHhHHHHH-HhhCCceEccccccccCCCcchhh
Confidence 355555566542 2445566777767777666554321 1111 11121 222222333222 23344
Q ss_pred hhcCCCccceeecCCCchHHH-------------HHHhCCccccccccc----c---hhHHHHHHhhhcceEEEEeec--
Q 017557 248 ILKHPSVGCFVTHCGSGSLSE-------------AMVNECQLVLLPNVG----D---QIINSRLMGEDLKVGVEVERG-- 305 (369)
Q Consensus 248 lL~~~~~~~~ItHgG~~s~~E-------------al~~GvP~i~~P~~~----D---Q~~na~~v~~~~g~G~~l~~~-- 305 (369)
+...+++ .+|.=|=+||+.. ++.+++|++..|-+. . -..|...+.+. |+-+.-+..
T Consensus 79 l~~~aD~-~vVaPaTaNtlaKiA~GiaDnllt~~~la~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~-G~~ii~P~~g~ 156 (399)
T PRK05579 79 LAKWADL-VLIAPATADLIAKLAHGIADDLLTTTLLATTAPVLVAPAMNTQMWENPATQRNLATLRSR-GVEIIGPASGR 156 (399)
T ss_pred cccccCE-EEEeeCCHHHHHHHHcccCCcHHHHHHHhcCCCEEEEeCCChhHcCCHHHHHHHHHHHHC-CCEEECCCCcc
Confidence 4444554 3555555555443 355799999999543 2 24577788876 877654311
Q ss_pred ----C--CCCccCHHHHHHHHHHHhc
Q 017557 306 ----D--EDGLFTRDGVCKAVKAVMD 325 (369)
Q Consensus 306 ----~--~~~~~~~~~l~~ai~~ll~ 325 (369)
+ .+...+.+++...+.+.+.
T Consensus 157 la~~~~g~gr~~~~~~I~~~~~~~~~ 182 (399)
T PRK05579 157 LACGDVGPGRMAEPEEIVAAAERALS 182 (399)
T ss_pred ccCCCcCCCCCCCHHHHHHHHHHHhh
Confidence 1 2456778888888887764
No 277
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=32.44 E-value=53 Score=30.56 Aligned_cols=55 Identities=15% Similarity=0.273 Sum_probs=38.1
Q ss_pred hhcCCCccceeecCCCchHHHHHH----hCCcccccccccchhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHHH
Q 017557 248 ILKHPSVGCFVTHCGSGSLSEAMV----NECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAV 323 (369)
Q Consensus 248 lL~~~~~~~~ItHgG~~s~~Eal~----~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~l 323 (369)
+...+++ +|+=||=||+..++. +++|++++-.. ..|..- + ++++++.++++++
T Consensus 60 ~~~~~d~--vi~lGGDGT~L~aa~~~~~~~~Pilgin~G--------------~lGFl~---~----~~~~~~~~~l~~i 116 (292)
T PRK03378 60 IGQQADL--AIVVGGDGNMLGAARVLARYDIKVIGINRG--------------NLGFLT---D----LDPDNALQQLSDV 116 (292)
T ss_pred cCCCCCE--EEEECCcHHHHHHHHHhcCCCCeEEEEECC--------------CCCccc---c----cCHHHHHHHHHHH
Confidence 3345666 999999999999975 36788877421 113322 2 5678888899888
Q ss_pred hc
Q 017557 324 MD 325 (369)
Q Consensus 324 l~ 325 (369)
++
T Consensus 117 ~~ 118 (292)
T PRK03378 117 LE 118 (292)
T ss_pred Hc
Confidence 86
No 278
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=32.20 E-value=56 Score=32.68 Aligned_cols=34 Identities=15% Similarity=0.201 Sum_probs=27.4
Q ss_pred HHHHHHHhhcCCCEEEECCCCChHHHHHHhCCCeEE
Q 017557 9 PAIEAIVRDIKPNIVFFDFTYWLPSLARKLGIKSIA 44 (369)
Q Consensus 9 ~~l~~~l~~~~pD~vI~D~~~~~~~~A~~lgiP~v~ 44 (369)
.++.+.+++.+||++|.. .....+|+++|||++.
T Consensus 383 ~e~~~~i~~~~pDliig~--s~~~~~a~k~giP~~~ 416 (475)
T PRK14478 383 RELYKMLKEAKADIMLSG--GRSQFIALKAGMPWLD 416 (475)
T ss_pred HHHHHHHhhcCCCEEEec--CchhhhhhhcCCCEEE
Confidence 456677788899999997 4556889999999983
No 279
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=32.18 E-value=45 Score=25.81 Aligned_cols=36 Identities=14% Similarity=0.004 Sum_probs=25.5
Q ss_pred HhhcCCCccceeecC---CCchHHHH---HHhCCcccccccc
Q 017557 247 LILKHPSVGCFVTHC---GSGSLSEA---MVNECQLVLLPNV 282 (369)
Q Consensus 247 ~lL~~~~~~~~ItHg---G~~s~~Ea---l~~GvP~i~~P~~ 282 (369)
..+..+++-+++-.+ +.||..|. .+.|+|++++-.-
T Consensus 57 ~~i~~~D~via~l~~~~~d~Gt~~ElG~A~algkpv~~~~~d 98 (113)
T PF05014_consen 57 EGIRECDIVIANLDGFRPDSGTAFELGYAYALGKPVILLTED 98 (113)
T ss_dssp HHHHHSSEEEEEECSSS--HHHHHHHHHHHHTTSEEEEEECC
T ss_pred HHHHHCCEEEEECCCCCCCCcHHHHHHHHHHCCCEEEEEEcC
Confidence 456667775566665 88999996 5689999987543
No 280
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=32.03 E-value=62 Score=30.23 Aligned_cols=28 Identities=7% Similarity=0.271 Sum_probs=23.9
Q ss_pred CCCccceeecCCCchHHHHHHhCCcccccc
Q 017557 251 HPSVGCFVTHCGSGSLSEAMVNECQLVLLP 280 (369)
Q Consensus 251 ~~~~~~~ItHgG~~s~~Eal~~GvP~i~~P 280 (369)
.|++ +|++++..+..-|-..|+|.|.+=
T Consensus 93 ~pDl--Vi~d~~~~~~~aA~~~~iP~i~i~ 120 (321)
T TIGR00661 93 NPDL--IISDFEYSTVVAAKLLKIPVICIS 120 (321)
T ss_pred CCCE--EEECCchHHHHHHHhcCCCEEEEe
Confidence 3555 999999999999999999999653
No 281
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=31.99 E-value=81 Score=26.66 Aligned_cols=41 Identities=29% Similarity=0.468 Sum_probs=30.4
Q ss_pred cHHHHHHHHhhcCCCEEEECC----CCChHHHHHHhCCCeEEEeC
Q 017557 7 TEPAIEAIVRDIKPNIVFFDF----TYWLPSLARKLGIKSIAFVT 47 (369)
Q Consensus 7 ~~~~l~~~l~~~~pD~vI~D~----~~~~~~~A~~lgiP~v~~~~ 47 (369)
..+.+.+++++.+||+|+.-. ...+..+|.+||.|+++-..
T Consensus 79 ~a~~l~~~i~~~~p~~Vl~g~t~~g~~la~rlA~~L~~~~vsdv~ 123 (181)
T cd01985 79 TAKALAALIKKEKPDLILAGATSIGKQLAPRVAALLGVPQISDVT 123 (181)
T ss_pred HHHHHHHHHHHhCCCEEEECCcccccCHHHHHHHHhCCCcceeEE
Confidence 345567777777899998775 34578899999999988543
No 282
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=31.98 E-value=79 Score=30.95 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=25.8
Q ss_pred HHHHhhcCCCEEEECCCCChHHHHHHhCCCeEEEe
Q 017557 12 EAIVRDIKPNIVFFDFTYWLPSLARKLGIKSIAFV 46 (369)
Q Consensus 12 ~~~l~~~~pD~vI~D~~~~~~~~A~~lgiP~v~~~ 46 (369)
.+.+++.+||++|... -+..+|+++|||.+.+.
T Consensus 343 ~~~~~~~~pDl~Ig~s--~~~~~a~~~giP~~r~~ 375 (416)
T cd01980 343 IAAVEEYRPDLAIGTT--PLVQYAKEKGIPALYYT 375 (416)
T ss_pred HHHHhhcCCCEEEeCC--hhhHHHHHhCCCEEEec
Confidence 3445677999999873 46678999999998854
No 283
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=31.70 E-value=2.8e+02 Score=25.65 Aligned_cols=115 Identities=15% Similarity=0.114 Sum_probs=66.5
Q ss_pred HHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhcCCCeeEecccChHHhhcCCCccceeecCCCchHHHHHHhCC
Q 017557 195 ELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGRGFVHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNEC 274 (369)
Q Consensus 195 ~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~ItHgG~~s~~Eal~~Gv 274 (369)
++.+.++..+..+++..+.. .-+|+.|.+..+. .-+=-||++ .=...|.+.+..++.+|+
T Consensus 156 ~~~~~l~~~~~Dlivlagy~-------~il~~~~l~~~~~-----------~iiNiHpSL--LP~yrG~~~~~~ai~~G~ 215 (286)
T PRK06027 156 RLLELIDEYQPDLVVLARYM-------QILSPDFVARFPG-----------RIINIHHSF--LPAFKGAKPYHQAYERGV 215 (286)
T ss_pred HHHHHHHHhCCCEEEEecch-------hhcCHHHHhhccC-----------CceecCccc--CCCCCCCCHHHHHHHCCC
Confidence 34555555556666665532 3445544433211 112235555 445578999999999999
Q ss_pred ccccccccc--chhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Q 017557 275 QLVLLPNVG--DQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAVMDDDSEVGKDARQNHAELRE 343 (369)
Q Consensus 275 P~i~~P~~~--DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~ 343 (369)
...++-.+. +..+.+.-+.+. .+.+..+ -|.++|.+.+.++- -.-|-+..+.+.+
T Consensus 216 ~~tG~TiH~v~~~~D~G~Ii~Q~---~v~i~~~-----dt~~~L~~ri~~~E------~~~~~~ai~~~~~ 272 (286)
T PRK06027 216 KLIGATAHYVTADLDEGPIIEQD---VIRVDHR-----DTAEDLVRAGRDVE------KQVLARAVRWHLE 272 (286)
T ss_pred CeEEEEEEEEcCCCcCCCcEEEE---EEEcCCC-----CCHHHHHHHHHHHH------HHHHHHHHHHHHh
Confidence 988887653 344444443333 3344444 48888988887654 3566666665543
No 284
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=31.68 E-value=1.8e+02 Score=25.78 Aligned_cols=61 Identities=10% Similarity=0.137 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhcCCCeeEecccChHHhhcCCCccceeecCCCc
Q 017557 192 QFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGRGFVHGGWVQQQLILKHPSVGCFVTHCGSG 264 (369)
Q Consensus 192 ~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~ItHgG~~ 264 (369)
.+.++++.+...+.+++++.|..+ ..+...+.+ ..++.+. |....+.....+++|+||-..
T Consensus 58 ~~~~~l~~l~~~g~~v~~v~GNHD------~~~~~~~~~---~~g~~~l---~~~~~~~~~g~~i~l~HGd~~ 118 (241)
T PRK05340 58 EIAAALKALSDSGVPCYFMHGNRD------FLLGKRFAK---AAGMTLL---PDPSVIDLYGQRVLLLHGDTL 118 (241)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCCc------hhhhHHHHH---hCCCEEe---CCcEEEEECCEEEEEECCccc
Confidence 344566666667788888887642 112222222 1244332 222223334455599998753
No 285
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=31.64 E-value=92 Score=28.20 Aligned_cols=40 Identities=20% Similarity=0.301 Sum_probs=32.0
Q ss_pred HHHHHHHHhhcCCCEEEECC-CCCh-------HHHHHHhCCCeEEEeCc
Q 017557 8 EPAIEAIVRDIKPNIVFFDF-TYWL-------PSLARKLGIKSIAFVTV 48 (369)
Q Consensus 8 ~~~l~~~l~~~~pD~vI~D~-~~~~-------~~~A~~lgiP~v~~~~~ 48 (369)
...+.+++++.++++|| |. .|+| ..+|+.+|||++-|--.
T Consensus 54 ~~~l~~~l~~~~i~~VI-DATHPfA~~is~~a~~ac~~~~ipyiR~eR~ 101 (248)
T PRK08057 54 AEGLAAYLREEGIDLVI-DATHPYAAQISANAAAACRALGIPYLRLERP 101 (248)
T ss_pred HHHHHHHHHHCCCCEEE-ECCCccHHHHHHHHHHHHHHhCCcEEEEeCC
Confidence 46789999999999865 66 6664 45789999999998753
No 286
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=31.63 E-value=82 Score=25.12 Aligned_cols=38 Identities=5% Similarity=0.135 Sum_probs=27.4
Q ss_pred ceEEEeeCCCccCCHHHHHHHHHHHH--hcCCcEEEEECC
Q 017557 176 SLIFCALGSECVLKKDQFQELILGFE--LTGLPFFAALKP 213 (369)
Q Consensus 176 ~~v~vs~GS~~~~~~~~~~~~~~~l~--~~~~~~i~~~~~ 213 (369)
.+++++|||......+.+.++.+.++ ..++++-|.+.+
T Consensus 2 aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~afts 41 (127)
T cd03412 2 AILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAFTS 41 (127)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEecH
Confidence 48999999998644456777888875 345677777643
No 287
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=31.61 E-value=77 Score=28.85 Aligned_cols=40 Identities=13% Similarity=0.252 Sum_probs=30.0
Q ss_pred HHHHHHHHhhcCCCEEEECCCCCh-------HHHHHHhCCCeEEEeC
Q 017557 8 EPAIEAIVRDIKPNIVFFDFTYWL-------PSLARKLGIKSIAFVT 47 (369)
Q Consensus 8 ~~~l~~~l~~~~pD~vI~D~~~~~-------~~~A~~lgiP~v~~~~ 47 (369)
...+.+++++.++|+||--..++| ..+|+.+|||++-|--
T Consensus 54 ~~~l~~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~eR 100 (256)
T TIGR00715 54 PQELREFLKRHSIDILVDATHPFAAQITTNATAVCKELGIPYVRFER 100 (256)
T ss_pred HHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEEEC
Confidence 345788999999997653336654 5678999999999853
No 288
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.46 E-value=63 Score=30.28 Aligned_cols=54 Identities=19% Similarity=0.213 Sum_probs=38.7
Q ss_pred hcCCCccceeecCCCchHHHHHH----hCCcccccccccchhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHHHh
Q 017557 249 LKHPSVGCFVTHCGSGSLSEAMV----NECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAVM 324 (369)
Q Consensus 249 L~~~~~~~~ItHgG~~s~~Eal~----~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ll 324 (369)
...+++ +|+=||=||+..+.. .++|++++... ..|...+ +..+++.+++++++
T Consensus 70 ~~~~D~--vi~lGGDGT~L~aar~~~~~~~PilGIN~G--------------~lGFL~~-------~~~~~~~~~l~~i~ 126 (306)
T PRK03372 70 ADGCEL--VLVLGGDGTILRAAELARAADVPVLGVNLG--------------HVGFLAE-------AEAEDLDEAVERVV 126 (306)
T ss_pred ccCCCE--EEEEcCCHHHHHHHHHhccCCCcEEEEecC--------------CCceecc-------CCHHHHHHHHHHHH
Confidence 345666 999999999998876 48898888541 2333332 45678888888888
Q ss_pred c
Q 017557 325 D 325 (369)
Q Consensus 325 ~ 325 (369)
+
T Consensus 127 ~ 127 (306)
T PRK03372 127 D 127 (306)
T ss_pred c
Confidence 6
No 289
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=31.32 E-value=5.4e+02 Score=25.83 Aligned_cols=140 Identities=11% Similarity=0.115 Sum_probs=78.7
Q ss_pred CceEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCC-chhHHHHhcCCCeeEeccc-------ChH
Q 017557 175 KSLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGHDTIESAL-PEGFEERVKGRGFVHGGWV-------QQQ 246 (369)
Q Consensus 175 ~~~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~l-p~~~~~~~~~~~~~v~~~~-------pq~ 246 (369)
+.+++.--||+.. .....+++.|.+.+..+-++..... ..-+ |..+ +.+....++..-|- .+.
T Consensus 71 k~IllgVtGsIAa---yka~~lvr~L~k~G~~V~VvmT~sA-----~~fv~p~~~-~~ls~~~V~~d~~~~~~~~~~~Hi 141 (475)
T PRK13982 71 KRVTLIIGGGIAA---YKALDLIRRLKERGAHVRCVLTKAA-----QQFVTPLTA-SALSGQRVYTDLFDPESEFDAGHI 141 (475)
T ss_pred CEEEEEEccHHHH---HHHHHHHHHHHhCcCEEEEEECcCH-----HHHhhHHHH-HHhcCCceEecCCCcccccCccch
Confidence 4455555566653 3455677777777877766654431 1111 1122 22222234432232 244
Q ss_pred HhhcCCCccceeecCCCchHHH-------------HHHhCCcccccccccch-------hHHHHHHhhhcceEEEEeec-
Q 017557 247 LILKHPSVGCFVTHCGSGSLSE-------------AMVNECQLVLLPNVGDQ-------IINSRLMGEDLKVGVEVERG- 305 (369)
Q Consensus 247 ~lL~~~~~~~~ItHgG~~s~~E-------------al~~GvP~i~~P~~~DQ-------~~na~~v~~~~g~G~~l~~~- 305 (369)
++...+++ .+|.=|=+||+.- .+..+.|++..|-.... ..|...+.+. |+-+.-+..
T Consensus 142 ~la~~aD~-~vVAPATANTIAKiA~GiADnLlt~v~La~~~PvliaPaMN~~M~~npat~~Nl~~L~~~-G~~vi~P~~g 219 (475)
T PRK13982 142 RLARDCDL-IVVAPATADLMAKMANGLADDLASAILLAANRPILLAPAMNPLMWNNPATRRNVAQLKRD-GVHMIGPNAG 219 (475)
T ss_pred hhhhhcCE-EEEeeCCHHHHHHHHccccCcHHHHHHHhcCCCEEEEEcCCHHHhcCHHHHHHHHHHHHC-CCEEECCCCC
Confidence 44445554 3455555554432 36678999999975433 3678888887 887654432
Q ss_pred ------C--CCCccCHHHHHHHHHHHhc
Q 017557 306 ------D--EDGLFTRDGVCKAVKAVMD 325 (369)
Q Consensus 306 ------~--~~~~~~~~~l~~ai~~ll~ 325 (369)
+ .+...++++|...+.+++.
T Consensus 220 ~lA~~g~~G~Grm~e~~~I~~~v~~~~~ 247 (475)
T PRK13982 220 EMAERGEAGVGRMAEPLEIAAAAEALLR 247 (475)
T ss_pred ccccCCCcCCCCCCCHHHHHHHHHHHHh
Confidence 1 2456778889888888774
No 290
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=31.28 E-value=72 Score=26.96 Aligned_cols=37 Identities=22% Similarity=0.254 Sum_probs=24.9
Q ss_pred HHHHHHHhhcCCCEEE-ECC--CCChHHHHHHhCCCeEEE
Q 017557 9 PAIEAIVRDIKPNIVF-FDF--TYWLPSLARKLGIKSIAF 45 (369)
Q Consensus 9 ~~l~~~l~~~~pD~vI-~D~--~~~~~~~A~~lgiP~v~~ 45 (369)
..+.+.+++.++|+|+ .+. .+.+..+|+.+|+|++..
T Consensus 41 ~~la~~~~~~~~d~Ivgv~~~Gi~~a~~la~~l~~p~~~~ 80 (175)
T PRK02304 41 DALVERYKDADIDKIVGIEARGFIFGAALAYKLGIGFVPV 80 (175)
T ss_pred HHHHHHhccCCCCEEEEEccchHHHHHHHHHHhCCCEEEE
Confidence 3333444444688887 333 667888999999998753
No 291
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=30.88 E-value=54 Score=29.19 Aligned_cols=33 Identities=33% Similarity=0.437 Sum_probs=26.2
Q ss_pred CCCEEE-ECC--CCChHHHHHHhCCCeEEEeCchHH
Q 017557 19 KPNIVF-FDF--TYWLPSLARKLGIKSIAFVTVSPA 51 (369)
Q Consensus 19 ~pD~vI-~D~--~~~~~~~A~~lgiP~v~~~~~~~~ 51 (369)
.||+|| .|. ...+..=|.++|||++++.-+...
T Consensus 155 ~Pd~vii~d~~~~~~ai~Ea~~l~IP~I~ivDTn~~ 190 (225)
T TIGR01011 155 LPDLLFVIDPVKEKIAVAEARKLGIPVVAIVDTNCD 190 (225)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCEEEEeeCCCC
Confidence 599775 677 667888899999999998865543
No 292
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=30.37 E-value=2.5e+02 Score=27.40 Aligned_cols=62 Identities=18% Similarity=0.098 Sum_probs=39.9
Q ss_pred CceEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhcCCCeeEecccChHHhhcCCCc
Q 017557 175 KSLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGRGFVHGGWVQQQLILKHPSV 254 (369)
Q Consensus 175 ~~~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~ 254 (369)
+.+-.|.+|.++ +.+++.+...|.+++..-... .... .++ .......++|+.+++
T Consensus 152 ktvGIiG~G~IG-------~~vA~~~~~fGm~V~~~d~~~--------~~~~--------~~~--~~~~~l~ell~~sDi 206 (409)
T PRK11790 152 KTLGIVGYGHIG-------TQLSVLAESLGMRVYFYDIED--------KLPL--------GNA--RQVGSLEELLAQSDV 206 (409)
T ss_pred CEEEEECCCHHH-------HHHHHHHHHCCCEEEEECCCc--------cccc--------CCc--eecCCHHHHHhhCCE
Confidence 558899999998 677777777788876543211 0000 111 122366789999999
Q ss_pred cceeecCCC
Q 017557 255 GCFVTHCGS 263 (369)
Q Consensus 255 ~~~ItHgG~ 263 (369)
++-|+-.
T Consensus 207 --Vslh~Pl 213 (409)
T PRK11790 207 --VSLHVPE 213 (409)
T ss_pred --EEEcCCC
Confidence 8888754
No 293
>COG3150 Predicted esterase [General function prediction only]
Probab=30.34 E-value=46 Score=28.25 Aligned_cols=45 Identities=16% Similarity=0.297 Sum_probs=33.2
Q ss_pred hhcHHHHHHHHhhcC-CCEEEE--CC-CCChHHHHHHhCCCeEEEeCch
Q 017557 5 DLTEPAIEAIVRDIK-PNIVFF--DF-TYWLPSLARKLGIKSIAFVTVS 49 (369)
Q Consensus 5 ~~~~~~l~~~l~~~~-pD~vI~--D~-~~~~~~~A~~lgiP~v~~~~~~ 49 (369)
....+++++++++.+ .+-+|+ .. .+|+.-++..+||+.|.+.|..
T Consensus 43 ~~a~~ele~~i~~~~~~~p~ivGssLGGY~At~l~~~~Girav~~NPav 91 (191)
T COG3150 43 QQALKELEKAVQELGDESPLIVGSSLGGYYATWLGFLCGIRAVVFNPAV 91 (191)
T ss_pred HHHHHHHHHHHHHcCCCCceEEeecchHHHHHHHHHHhCChhhhcCCCc
Confidence 445667777777764 444444 44 8899999999999999998754
No 294
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=30.31 E-value=55 Score=28.76 Aligned_cols=38 Identities=18% Similarity=0.363 Sum_probs=25.3
Q ss_pred HHHHHHHhhc--CCCEEEECC-CC-------ChHHHHHHhCCCeEEEe
Q 017557 9 PAIEAIVRDI--KPNIVFFDF-TY-------WLPSLARKLGIKSIAFV 46 (369)
Q Consensus 9 ~~l~~~l~~~--~pD~vI~D~-~~-------~~~~~A~~lgiP~v~~~ 46 (369)
|.+.+.+++. .||+|++|- .. .|..+--.+|+|+|...
T Consensus 81 p~l~~~~~~l~~~PDlilVDG~G~~HpR~~GlA~HlGv~l~~PtIGVA 128 (208)
T cd06559 81 PPLLEALEKLKTKPDLLLVDGHGIAHPRRFGLASHLGVLLDLPTIGVA 128 (208)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCccccCCCcchhheeeeecCCCEEEEE
Confidence 3466667766 499999996 22 24555556677887764
No 295
>CHL00067 rps2 ribosomal protein S2
Probab=30.27 E-value=56 Score=29.19 Aligned_cols=33 Identities=33% Similarity=0.468 Sum_probs=26.0
Q ss_pred CCCEEE-ECC--CCChHHHHHHhCCCeEEEeCchHH
Q 017557 19 KPNIVF-FDF--TYWLPSLARKLGIKSIAFVTVSPA 51 (369)
Q Consensus 19 ~pD~vI-~D~--~~~~~~~A~~lgiP~v~~~~~~~~ 51 (369)
.||+|| .|. ...+..=|.++|||.+++.-+...
T Consensus 161 ~P~~iiv~d~~~~~~ai~Ea~~l~IPvIaivDTn~~ 196 (230)
T CHL00067 161 LPDIVIIIDQQEEYTALRECRKLGIPTISILDTNCD 196 (230)
T ss_pred CCCEEEEeCCcccHHHHHHHHHcCCCEEEEEeCCCC
Confidence 589775 677 457888899999999998866544
No 296
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=30.19 E-value=2.3e+02 Score=26.01 Aligned_cols=100 Identities=13% Similarity=0.080 Sum_probs=49.9
Q ss_pred CceEEEeeCCCccCCHHHHHHH---HHHHH-hcCCcEEEEECCCCCCCccccCCchhHHHHhcCCCeeEecccCh--HHh
Q 017557 175 KSLIFCALGSECVLKKDQFQEL---ILGFE-LTGLPFFAALKPPTGHDTIESALPEGFEERVKGRGFVHGGWVQQ--QLI 248 (369)
Q Consensus 175 ~~~v~vs~GS~~~~~~~~~~~~---~~~l~-~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq--~~l 248 (369)
++.|.|++-.......+..+++ ++.+. ..++++++..-.... ....-..+.+....+..++...-|+ ..+
T Consensus 172 ~~~i~i~~r~~~~~~~~~~~~l~~~l~~l~~~~g~~v~~i~~~~~~----D~~~~~~l~~~~~~~~~i~~~~~~~e~~~~ 247 (298)
T TIGR03609 172 EPVIVVSLRPWPLLDVSRLLRLLRALDRLQRDTGAFVLFLPFQQPQ----DLPLARALRDQLLGPAEVLSPLDPEELLGL 247 (298)
T ss_pred CCeEEEEECCCCcCCHHHHHHHHHHHHHHHHhhCCeEEEEeCCcch----hHHHHHHHHHhcCCCcEEEecCCHHHHHHH
Confidence 4577777754322333333333 44443 347877766422110 0111112222222222223222233 246
Q ss_pred hcCCCccceeecCCCchHHHHHHhCCccccccc
Q 017557 249 LKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPN 281 (369)
Q Consensus 249 L~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~P~ 281 (369)
++++++ +|+-== -++.-|+.+|||.+++.+
T Consensus 248 i~~~~~--vI~~Rl-H~~I~A~~~gvP~i~i~y 277 (298)
T TIGR03609 248 FASARL--VIGMRL-HALILAAAAGVPFVALSY 277 (298)
T ss_pred HhhCCE--EEEech-HHHHHHHHcCCCEEEeec
Confidence 778887 887442 346668999999998853
No 297
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=30.13 E-value=1.2e+02 Score=25.59 Aligned_cols=30 Identities=13% Similarity=0.242 Sum_probs=22.2
Q ss_pred CCCceEEEeeCCCccCCHHHHHHHHHHHHh
Q 017557 173 KAKSLIFCALGSECVLKKDQFQELILGFEL 202 (369)
Q Consensus 173 ~~~~~v~vs~GS~~~~~~~~~~~~~~~l~~ 202 (369)
+.+..+|+++||........+...++.|..
T Consensus 5 ~~~~~v~i~LGSNlg~~~~~l~~A~~~L~~ 34 (163)
T PRK14092 5 PASALAYVGLGANLGDAAATLRSVLAELAA 34 (163)
T ss_pred CcCCEEEEEecCchHhHHHHHHHHHHHHHh
Confidence 345589999999986566667777777755
No 298
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=30.11 E-value=75 Score=32.18 Aligned_cols=37 Identities=8% Similarity=-0.046 Sum_probs=28.6
Q ss_pred HHHHHHHHhhcCCCEEEECCCCChHHHHHHhCCCeEEEe
Q 017557 8 EPAIEAIVRDIKPNIVFFDFTYWLPSLARKLGIKSIAFV 46 (369)
Q Consensus 8 ~~~l~~~l~~~~pD~vI~D~~~~~~~~A~~lgiP~v~~~ 46 (369)
.-++++++...+||++|.+. .+..+|+++|||++-+.
T Consensus 426 l~~l~~~l~~~~~DlliG~s--~~k~~a~~~giPlir~g 462 (515)
T TIGR01286 426 LWHLRSLVFTEPVDFLIGNS--YGKYIQRDTLVPLIRIG 462 (515)
T ss_pred HHHHHHHHhhcCCCEEEECc--hHHHHHHHcCCCEEEec
Confidence 34667777778899999876 34678999999998753
No 299
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=29.92 E-value=85 Score=26.47 Aligned_cols=38 Identities=26% Similarity=0.466 Sum_probs=25.1
Q ss_pred HHHHHHHhhcCCCEEEECC-CCC-hHHHHHHhCCCeEEEeC
Q 017557 9 PAIEAIVRDIKPNIVFFDF-TYW-LPSLARKLGIKSIAFVT 47 (369)
Q Consensus 9 ~~l~~~l~~~~pD~vI~D~-~~~-~~~~A~~lgiP~v~~~~ 47 (369)
+.+++++ +.+||+||... ... ...--++.|+|++.+..
T Consensus 51 ~n~E~l~-~l~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~ 90 (195)
T cd01143 51 PNVEKIV-ALKPDLVIVSSSSLAELLEKLKDAGIPVVVLPA 90 (195)
T ss_pred CCHHHHh-ccCCCEEEEcCCcCHHHHHHHHHcCCcEEEeCC
Confidence 3455544 57899999866 332 34455778999887753
No 300
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=29.91 E-value=98 Score=23.76 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=27.3
Q ss_pred HHHHHHHHhhcCCCEEEECC-CC---ChHHHHHHhCCCeEE
Q 017557 8 EPAIEAIVRDIKPNIVFFDF-TY---WLPSLARKLGIKSIA 44 (369)
Q Consensus 8 ~~~l~~~l~~~~pD~vI~D~-~~---~~~~~A~~lgiP~v~ 44 (369)
...+.++.++.++|++|..+ .+ ...+..++.|||++.
T Consensus 51 ~~~l~~~a~~~~idlvvvGPE~pL~~Gl~D~l~~~gi~vfG 91 (100)
T PF02844_consen 51 PEELADFAKENKIDLVVVGPEAPLVAGLADALRAAGIPVFG 91 (100)
T ss_dssp HHHHHHHHHHTTESEEEESSHHHHHTTHHHHHHHTT-CEES
T ss_pred HHHHHHHHHHcCCCEEEECChHHHHHHHHHHHHHCCCcEEC
Confidence 45677788888999999998 55 346667777999864
No 301
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=29.80 E-value=2e+02 Score=27.41 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=26.5
Q ss_pred eEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCC
Q 017557 177 LIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPP 214 (369)
Q Consensus 177 ~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~ 214 (369)
++++++|+.+ ...-+-.++++|.+.|+++.+.+...
T Consensus 3 Il~~~~p~~G--Hv~P~l~la~~L~~rGh~V~~~t~~~ 38 (401)
T cd03784 3 VLITTIGSRG--DVQPLVALAWALRAAGHEVRVATPPE 38 (401)
T ss_pred EEEEeCCCcc--hHHHHHHHHHHHHHCCCeEEEeeCHh
Confidence 7788888766 34445678888888888888887653
No 302
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=29.78 E-value=3.6e+02 Score=23.35 Aligned_cols=88 Identities=9% Similarity=0.140 Sum_probs=49.1
Q ss_pred ccChHHhhcCCCccceeecCC-Cch----HHHHHHhCCcccccccccchhHHHHHHhhhcce--EEEEeecCCCCccCHH
Q 017557 242 WVQQQLILKHPSVGCFVTHCG-SGS----LSEAMVNECQLVLLPNVGDQIINSRLMGEDLKV--GVEVERGDEDGLFTRD 314 (369)
Q Consensus 242 ~~pq~~lL~~~~~~~~ItHgG-~~s----~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~--G~~l~~~~~~~~~~~~ 314 (369)
.+.+.++|.++.+ ||+ +|| +.+++..|+.+| .|....+++-.+. ++ ++.+- +.+.
T Consensus 62 ~i~~~~fLE~a~~-----~gnyYGT~~~~ve~~~~~G~~vi-----ldId~qGa~qvk~-~~p~~v~IF-------i~pP 123 (191)
T COG0194 62 LIERDEFLEWAEY-----HGNYYGTSREPVEQALAEGKDVI-----LDIDVQGALQVKK-KMPNAVSIF-------ILPP 123 (191)
T ss_pred HHhcCCcEEEEEE-----cCCcccCcHHHHHHHHhcCCeEE-----EEEehHHHHHHHH-hCCCeEEEE-------EcCC
Confidence 4456667776655 444 343 345566776665 4555555544444 44 33333 2333
Q ss_pred HHHHHHHHHhccCCcchHHHHHHHHHHHHHHhc
Q 017557 315 GVCKAVKAVMDDDSEVGKDARQNHAELREFLIS 347 (369)
Q Consensus 315 ~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~ 347 (369)
++.+.-+++...+.+..+.+.+|..+..+.+..
T Consensus 124 s~eeL~~RL~~Rgtds~e~I~~Rl~~a~~Ei~~ 156 (191)
T COG0194 124 SLEELERRLKGRGTDSEEVIARRLENAKKEISH 156 (191)
T ss_pred CHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHH
Confidence 444444455544345567788888888888764
No 303
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=29.73 E-value=56 Score=25.46 Aligned_cols=36 Identities=17% Similarity=0.270 Sum_probs=29.2
Q ss_pred HHHHHHHhhcCCCEEEECC----------CCChHHHHHHhCCCeEE
Q 017557 9 PAIEAIVRDIKPNIVFFDF----------TYWLPSLARKLGIKSIA 44 (369)
Q Consensus 9 ~~l~~~l~~~~pD~vI~D~----------~~~~~~~A~~lgiP~v~ 44 (369)
+.+.+++++.++|+||.-+ .+.....|-.+|||+++
T Consensus 61 ~~i~~~i~~~~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~iT 106 (116)
T cd01423 61 PSLRELLAEGKIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLIT 106 (116)
T ss_pred hhHHHHHHcCCceEEEECCCCCCCccccCcEeeehhhHhhCCcccc
Confidence 6788999999999999843 24467789999999974
No 304
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=29.67 E-value=4.2e+02 Score=27.33 Aligned_cols=109 Identities=17% Similarity=0.230 Sum_probs=60.9
Q ss_pred CceEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhcCCCeeEecccChHHhhcCCCc
Q 017557 175 KSLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGRGFVHGGWVQQQLILKHPSV 254 (369)
Q Consensus 175 ~~~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~ 254 (369)
..+++++||++.. .....++.|.+.+..+-++- .. ....+.+.+.. .+..+.++
T Consensus 502 ~~vail~~G~~~~----~al~vae~L~~~Gi~~TVvd-~r-----fvkPlD~~ll~----------------~La~~h~~ 555 (627)
T COG1154 502 EKVAILAFGTMLP----EALKVAEKLNAYGISVTVVD-PR-----FVKPLDEALLL----------------ELAKSHDL 555 (627)
T ss_pred CcEEEEecchhhH----HHHHHHHHHHhcCCCcEEEc-Ce-----ecCCCCHHHHH----------------HHHhhcCe
Confidence 4599999999973 23345555655555543331 00 12233333221 23334444
Q ss_pred cceee------cCCCch-HHHHHH-hC--Cccc--cccc-ccchhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHH
Q 017557 255 GCFVT------HCGSGS-LSEAMV-NE--CQLV--LLPN-VGDQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVK 321 (369)
Q Consensus 255 ~~~It------HgG~~s-~~Eal~-~G--vP~i--~~P~-~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~ 321 (369)
+|| +||.|| +.|.+. +| +|++ ++|- +.||..-...+.+. | ++++.+.+.|.
T Consensus 556 --~vtlEe~~~~GG~Gs~v~efl~~~~~~~~v~~lglpd~fi~hg~~~el~~~~-g-------------Ld~~~i~~~i~ 619 (627)
T COG1154 556 --VVTLEENVVDGGFGSAVLEFLAAHGILVPVLNLGLPDEFIDHGSPEELLAEL-G-------------LDAEGIARRIL 619 (627)
T ss_pred --EEEEecCcccccHHHHHHHHHHhcCCCCceEEecCChHhhccCCHHHHHHHc-C-------------CCHHHHHHHHH
Confidence 444 888876 556654 44 4544 4443 45666666666655 2 78888888888
Q ss_pred HHhc
Q 017557 322 AVMD 325 (369)
Q Consensus 322 ~ll~ 325 (369)
+.+.
T Consensus 620 ~~l~ 623 (627)
T COG1154 620 EWLK 623 (627)
T ss_pred HHHh
Confidence 7775
No 305
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=29.60 E-value=64 Score=27.70 Aligned_cols=40 Identities=15% Similarity=0.194 Sum_probs=21.7
Q ss_pred HHHHHHHHhhcCCCEEE-ECC--CCChHHHHHHhCCCeEEEeC
Q 017557 8 EPAIEAIVRDIKPNIVF-FDF--TYWLPSLARKLGIKSIAFVT 47 (369)
Q Consensus 8 ~~~l~~~l~~~~pD~vI-~D~--~~~~~~~A~~lgiP~v~~~~ 47 (369)
...++.+++..+||++| ++. .+-....|++.|||.+.+..
T Consensus 84 ~~~~~rfl~~~~P~~~i~~EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 84 PWAVRRFLDHWRPDLLIWVETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp HHHHHHHHHHH--SEEEEES----HHHHHH-----S-EEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEEccccCHHHHHHHhhcCCCEEEEee
Confidence 44578888888999776 555 44456788889999999753
No 306
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=29.26 E-value=1.2e+02 Score=26.34 Aligned_cols=39 Identities=13% Similarity=0.345 Sum_probs=25.4
Q ss_pred HHHHHHhhcCCCEEEEC----C-CCChHHHHHHh-----CCCeEEEeCc
Q 017557 10 AIEAIVRDIKPNIVFFD----F-TYWLPSLARKL-----GIKSIAFVTV 48 (369)
Q Consensus 10 ~l~~~l~~~~pD~vI~D----~-~~~~~~~A~~l-----giP~v~~~~~ 48 (369)
.+.+.+++.+|||||.| . .+-+..+++.+ ++|.+.++..
T Consensus 38 ~~~~~~~~~~pDlvLlDl~~~l~~~~g~~~i~~i~~~~p~~~iivlt~~ 86 (207)
T PRK15411 38 DLAIACDSLRPSVVFINEDCFIHDASNSQRIKQIINQHPNTLFIVFMAI 86 (207)
T ss_pred HHHHHHhccCCCEEEEeCcccCCCCChHHHHHHHHHHCCCCeEEEEECC
Confidence 44455666689999999 5 55555666544 4667776644
No 307
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.81 E-value=80 Score=29.05 Aligned_cols=34 Identities=12% Similarity=0.136 Sum_probs=25.5
Q ss_pred hHHhhcCCCccceeecCCCchHHHHHH----hCCcccccc
Q 017557 245 QQLILKHPSVGCFVTHCGSGSLSEAMV----NECQLVLLP 280 (369)
Q Consensus 245 q~~lL~~~~~~~~ItHgG~~s~~Eal~----~GvP~i~~P 280 (369)
+.++...+++ +|+=||=||+..+.. .++|++++-
T Consensus 36 ~~~~~~~~d~--vi~iGGDGT~L~aa~~~~~~~~PilgIn 73 (272)
T PRK02231 36 LEEIGQRAQL--AIVIGGDGNMLGRARVLAKYDIPLIGIN 73 (272)
T ss_pred hHHhCcCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEe
Confidence 3444455677 999999999998755 368888874
No 308
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=28.79 E-value=58 Score=28.48 Aligned_cols=40 Identities=25% Similarity=0.277 Sum_probs=26.3
Q ss_pred HHHHHHHhhcCCCEEEECC-C--CChHHHHHHhCCCeEEEeCch
Q 017557 9 PAIEAIVRDIKPNIVFFDF-T--YWLPSLARKLGIKSIAFVTVS 49 (369)
Q Consensus 9 ~~l~~~l~~~~pD~vI~D~-~--~~~~~~A~~lgiP~v~~~~~~ 49 (369)
+.++.+ .+.+||+||... . .-...-....+||++.+....
T Consensus 51 ~~~E~i-~~l~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 51 PNLEAI-LALKPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSS 93 (238)
T ss_dssp B-HHHH-HHT--SEEEEETTSSCHHHHHHHHHTTSEEEEESSTT
T ss_pred ccHHHH-HhCCCCEEEEeccccchHHHHHHhcccceEEEeeccc
Confidence 345444 457899999988 5 244555667799999988765
No 309
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=28.78 E-value=76 Score=32.40 Aligned_cols=28 Identities=18% Similarity=0.391 Sum_probs=22.3
Q ss_pred CccceeecCCCc------hHHHHHHhCCcccccc
Q 017557 253 SVGCFVTHCGSG------SLSEAMVNECQLVLLP 280 (369)
Q Consensus 253 ~~~~~ItHgG~~------s~~Eal~~GvP~i~~P 280 (369)
..+++++|.|-| +++||.+.++|+|++-
T Consensus 76 ~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 76 KPAVCMACSGPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred CCeEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 344488887744 7889999999999984
No 310
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=28.60 E-value=67 Score=31.77 Aligned_cols=35 Identities=29% Similarity=0.445 Sum_probs=27.5
Q ss_pred HHHHHHHhhcCCCEEEECCCCChHHHHHHhCCCeEEE
Q 017557 9 PAIEAIVRDIKPNIVFFDFTYWLPSLARKLGIKSIAF 45 (369)
Q Consensus 9 ~~l~~~l~~~~pD~vI~D~~~~~~~~A~~lgiP~v~~ 45 (369)
-++.+.+++.+||++|... .+..+|+++|||++..
T Consensus 377 ~e~~~~i~~~~pdllig~s--~~~~~A~~lgip~~~~ 411 (443)
T TIGR01862 377 LEFEEILEKLKPDIIFSGI--KEKFVAQKLGVPYRQM 411 (443)
T ss_pred HHHHHHHHhcCCCEEEEcC--cchhhhhhcCCCeEec
Confidence 3566667788999999776 3467899999999864
No 311
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=28.52 E-value=40 Score=24.42 Aligned_cols=32 Identities=28% Similarity=0.162 Sum_probs=22.3
Q ss_pred hhcCCCEEEECC---CCChHHHHHHhCCCeEEEeC
Q 017557 16 RDIKPNIVFFDF---TYWLPSLARKLGIKSIAFVT 47 (369)
Q Consensus 16 ~~~~pD~vI~D~---~~~~~~~A~~lgiP~v~~~~ 47 (369)
...+.--||++. ..-+..+|+.+|||++.-..
T Consensus 27 ~~~~~~Giv~~~Gg~~SH~aIlAr~~giP~ivg~~ 61 (80)
T PF00391_consen 27 DLQRVAGIVTEEGGPTSHAAILARELGIPAIVGVG 61 (80)
T ss_dssp HHTTSSEEEESSSSTTSHHHHHHHHTT-EEEESTT
T ss_pred chhheEEEEEEcCCccchHHHHHHHcCCCEEEeec
Confidence 344667788776 33467899999999998543
No 312
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=28.19 E-value=1.1e+02 Score=28.02 Aligned_cols=42 Identities=29% Similarity=0.362 Sum_probs=32.0
Q ss_pred HHHHHHHHhhcCCCEEEEC-----C--CCChHHHHHHhCCCeEEEeCch
Q 017557 8 EPAIEAIVRDIKPNIVFFD-----F--TYWLPSLARKLGIKSIAFVTVS 49 (369)
Q Consensus 8 ~~~l~~~l~~~~pD~vI~D-----~--~~~~~~~A~~lgiP~v~~~~~~ 49 (369)
...+.+.+++.++|+|+.- . .-.+..+|+.||+|++++..--
T Consensus 100 a~~Laa~~~~~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~~i 148 (260)
T COG2086 100 AKALAAAVKKIGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVSKI 148 (260)
T ss_pred HHHHHHHHHhcCCCEEEEecccccCCccchHHHHHHHhCCceeeeEEEE
Confidence 3456777788899999864 3 3357889999999999976533
No 313
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=28.13 E-value=5.1e+02 Score=26.66 Aligned_cols=52 Identities=12% Similarity=0.155 Sum_probs=28.6
Q ss_pred ecCCCchHHHHHHhCCc----cccccc-ccchhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHHHh
Q 017557 259 THCGSGSLSEAMVNECQ----LVLLPN-VGDQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAVM 324 (369)
Q Consensus 259 tHgG~~s~~Eal~~GvP----~i~~P~-~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ll 324 (369)
.+||+|+........-+ .+++|- +.+........++. | ++++.|.+.|++++
T Consensus 524 ~~GG~gs~v~~~l~~~~~~~~~~gi~d~f~~~g~~~~l~~~~-G-------------l~~~~I~~~i~~~l 580 (581)
T PRK12315 524 LDGGFGEKIARYYGNSDMKVLNYGAKKEFNDRVPVEELYKRN-H-------------LTPEQIVEDILSVL 580 (581)
T ss_pred cCCCHHHHHHHHHHcCCCeEEEecCCCCCCCCCCHHHHHHHH-C-------------cCHHHHHHHHHHHh
Confidence 46888876655554333 244544 33333222333322 1 78888888887765
No 314
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=28.10 E-value=62 Score=32.20 Aligned_cols=35 Identities=31% Similarity=0.523 Sum_probs=28.0
Q ss_pred HHHHHHHhhcCCCEEEECCCCChHHHHHHhCCCeEEE
Q 017557 9 PAIEAIVRDIKPNIVFFDFTYWLPSLARKLGIKSIAF 45 (369)
Q Consensus 9 ~~l~~~l~~~~pD~vI~D~~~~~~~~A~~lgiP~v~~ 45 (369)
.++.+.+++.+||++|... ....+|+++|||++..
T Consensus 385 ~e~~~~i~~~~pDllig~~--~~~~~a~k~gip~~~~ 419 (457)
T TIGR01284 385 LELEEIIEKYKPDIILTGI--REGELAKKLGVPYINI 419 (457)
T ss_pred HHHHHHHHhcCCCEEEecC--CcchhhhhcCCCEEEc
Confidence 3577778888999999876 2356899999999885
No 315
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=27.85 E-value=85 Score=30.86 Aligned_cols=32 Identities=22% Similarity=0.356 Sum_probs=25.1
Q ss_pred HHHhhcCCCEEEECCCCChHHHHHHhCCCeEEEe
Q 017557 13 AIVRDIKPNIVFFDFTYWLPSLARKLGIKSIAFV 46 (369)
Q Consensus 13 ~~l~~~~pD~vI~D~~~~~~~~A~~lgiP~v~~~ 46 (369)
+.+++.+||++|... -+..+|+++|||.+.+.
T Consensus 349 ~~l~~~~pDllig~s--~~~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 349 EAVLEFEPDLAIGTT--PLVQFAKEHGIPALYFT 380 (422)
T ss_pred HHHhhCCCCEEEcCC--cchHHHHHcCCCEEEec
Confidence 455677999999885 24457999999999964
No 316
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.62 E-value=3.1e+02 Score=23.12 Aligned_cols=92 Identities=15% Similarity=0.140 Sum_probs=58.1
Q ss_pred hhcCCCccceeecCC---CchHHHHHHhCCccccccccc-chhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHHH
Q 017557 248 ILKHPSVGCFVTHCG---SGSLSEAMVNECQLVLLPNVG-DQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAV 323 (369)
Q Consensus 248 lL~~~~~~~~ItHgG---~~s~~Eal~~GvP~i~~P~~~-DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~l 323 (369)
|-+||++..-+--.| ..|..|-..+|.=-+.==-+. =+..|+.+.++. |.=..+--.. .|.+.|.++.++=
T Consensus 69 iraHPdLAgk~a~a~elta~S~~EQasAGLd~Ls~~E~a~f~~LN~aY~~rF-gfPfI~aVkg----~~k~~Il~a~~~R 143 (176)
T COG3195 69 IRAHPDLAGKAAIAGELTAESTSEQASAGLDRLSPEEFARFTELNAAYVERF-GFPFIIAVKG----NTKDTILAAFERR 143 (176)
T ss_pred HHhChhhHHHHHHHHHhhhhhHHHHHhcCcccCCHHHHHHHHHHHHHHHHhc-CCceEEeecC----CCHHHHHHHHHHH
Confidence 345777632222222 346677777765443211111 246799999998 9998888665 7888888888888
Q ss_pred hccCCcchHHHHHHHHHHHHHHh
Q 017557 324 MDDDSEVGKDARQNHAELREFLI 346 (369)
Q Consensus 324 l~~~~~~~~~~~~~a~~l~~~~~ 346 (369)
+.+ ++...++..+.++.++.+
T Consensus 144 l~n--~~e~E~~tAl~eI~rIA~ 164 (176)
T COG3195 144 LDN--DREQEFATALAEIERIAL 164 (176)
T ss_pred hcc--cHHHHHHHHHHHHHHHHH
Confidence 872 334567777777666654
No 317
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=27.58 E-value=37 Score=27.03 Aligned_cols=40 Identities=23% Similarity=0.347 Sum_probs=23.9
Q ss_pred HHHHHHHH--hhcCCCEEEECC--CCChHHHHH-HhCCCeEEEeC
Q 017557 8 EPAIEAIV--RDIKPNIVFFDF--TYWLPSLAR-KLGIKSIAFVT 47 (369)
Q Consensus 8 ~~~l~~~l--~~~~pD~vI~D~--~~~~~~~A~-~lgiP~v~~~~ 47 (369)
...+.+++ ++.+||+|.+.. ..+...+++ ..++|++....
T Consensus 60 ~~~~~~~l~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 60 LRRLRRLLAARRERPDVVHAHSPTAGLVAALARRRRGIPLVVTVH 104 (160)
T ss_dssp HHHHHHHCHHCT---SEEEEEHHHHHHHHHHHHHHHT--EEEE-S
T ss_pred HHHHHHHHhhhccCCeEEEecccchhHHHHHHHHccCCcEEEEEC
Confidence 45667777 777999998776 334455555 88999998765
No 318
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=27.39 E-value=92 Score=29.13 Aligned_cols=72 Identities=17% Similarity=0.176 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhcCCCeeEecccChHHhhcCCCccceeecCCCchHHH
Q 017557 189 KKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGRGFVHGGWVQQQLILKHPSVGCFVTHCGSGSLSE 268 (369)
Q Consensus 189 ~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~ItHgG~~s~~E 268 (369)
+.++.+++.+++...+...||.++.+.. -.++.++++...+-+||++ ||=....++++-
T Consensus 51 ~~~Ra~dL~~a~~Dp~i~aI~~~rGG~g-------------------~~rlL~~lD~~~i~~~PK~--fiGySDiTaL~~ 109 (308)
T cd07062 51 PEERAEELMAAFADPSIKAIIPTIGGDD-------------------SNELLPYLDYELIKKNPKI--FIGYSDITALHL 109 (308)
T ss_pred HHHHHHHHHHHhcCCCCCEEEECCcccC-------------------HhhhhhhcCHHHHhhCCCE--EEeccHHHHHHH
Confidence 4567888999999999999999876532 1122244444445555655 666666666666
Q ss_pred HHH--hCCccccccc
Q 017557 269 AMV--NECQLVLLPN 281 (369)
Q Consensus 269 al~--~GvP~i~~P~ 281 (369)
+++ .|++.+-=|.
T Consensus 110 al~~~~g~~t~hGp~ 124 (308)
T cd07062 110 AIYKKTGLVTYYGPN 124 (308)
T ss_pred HHHHhcCCeEEECcc
Confidence 654 2555555554
No 319
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=27.20 E-value=68 Score=32.96 Aligned_cols=96 Identities=13% Similarity=0.013 Sum_probs=50.1
Q ss_pred ChHHhhcCCCccceeecCC-Cc-hHHHHHHhCCccccccccc-chhHHHH--HHhhhcceEEEEeecCCCCccCHHHHHH
Q 017557 244 QQQLILKHPSVGCFVTHCG-SG-SLSEAMVNECQLVLLPNVG-DQIINSR--LMGEDLKVGVEVERGDEDGLFTRDGVCK 318 (369)
Q Consensus 244 pq~~lL~~~~~~~~ItHgG-~~-s~~Eal~~GvP~i~~P~~~-DQ~~na~--~v~~~~g~G~~l~~~~~~~~~~~~~l~~ 318 (369)
+..+++.-+++++|-|-== || |-+|++++|||.|.-=+.+ -++.+-. .-... |+-+.-+.. -+.++..+
T Consensus 462 ~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~~~~~~-GV~VvdR~~-----~n~~e~v~ 535 (633)
T PF05693_consen 462 DYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIEDPEEY-GVYVVDRRD-----KNYDESVN 535 (633)
T ss_dssp -HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS-HHGGG-TEEEE-SSS-----S-HHHHHH
T ss_pred CHHHHhccCceeeeccccccccCChHHHhhcCCceeeccchhHHHHHHHhhccCcCC-cEEEEeCCC-----CCHHHHHH
Confidence 3456666677755555211 32 8899999999999887743 2222211 11234 665554443 45666555
Q ss_pred HHHHHhc----cCCcchHHHHHHHHHHHHHH
Q 017557 319 AVKAVMD----DDSEVGKDARQNHAELREFL 345 (369)
Q Consensus 319 ai~~ll~----~~~~~~~~~~~~a~~l~~~~ 345 (369)
.|.+.|. ....+....|.++++|++.+
T Consensus 536 ~la~~l~~f~~~~~rqri~~Rn~ae~LS~~~ 566 (633)
T PF05693_consen 536 QLADFLYKFCQLSRRQRIIQRNRAERLSDLA 566 (633)
T ss_dssp HHHHHHHHHHT--HHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 5555543 11222456778888777765
No 320
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=27.07 E-value=49 Score=26.97 Aligned_cols=39 Identities=10% Similarity=0.128 Sum_probs=27.7
Q ss_pred ceEEEeeCCCccCCHHHHHHHHHHHH-----hcCCcEEEEECCC
Q 017557 176 SLIFCALGSECVLKKDQFQELILGFE-----LTGLPFFAALKPP 214 (369)
Q Consensus 176 ~~v~vs~GS~~~~~~~~~~~~~~~l~-----~~~~~~i~~~~~~ 214 (369)
.+++|+.|+........+..++.... .....++|+++..
T Consensus 3 ~vvlvAGG~GIt~~l~~l~~l~~~~~~~~~~~~~i~lvW~vR~~ 46 (156)
T PF08030_consen 3 NVVLVAGGSGITPILPILRDLLQRQNRGSSRTRRIKLVWVVRDA 46 (156)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHHHHTT-----EEEEEEEES-T
T ss_pred EEEEEecCcCHHHHHHHHHHHHHhhccccccccceEEEEeeCch
Confidence 38999999988766667777777665 2346799999875
No 321
>PRK11269 glyoxylate carboligase; Provisional
Probab=27.05 E-value=1.4e+02 Score=30.65 Aligned_cols=27 Identities=15% Similarity=0.314 Sum_probs=22.4
Q ss_pred ccceeecCC------CchHHHHHHhCCcccccc
Q 017557 254 VGCFVTHCG------SGSLSEAMVNECQLVLLP 280 (369)
Q Consensus 254 ~~~~ItHgG------~~s~~Eal~~GvP~i~~P 280 (369)
++++++|.| .+++++|.+.++|+|++.
T Consensus 69 ~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~ 101 (591)
T PRK11269 69 IGVCIGTSGPAGTDMITGLYSASADSIPILCIT 101 (591)
T ss_pred cEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 455888877 568899999999999984
No 322
>PF04493 Endonuclease_5: Endonuclease V; InterPro: IPR007581 Endonuclease V is specific for single-stranded DNA, for duplex DNA that contains uracil, or that is damaged []. Matrix metalloproteinase-1 (MMP-1) is the major enzyme responsible for collagen 1 digestion. It is induced by exposure to sunlight, but is reduced with treatment of DNA repair enzyme endonuclease V []. This family consequently has potential medical importance []. This endonuclease also appears in bifunctional enzymes, such as the bifunctional methyltransferase/endonuclease in Thermoplasma acidophilum.; GO: 0004519 endonuclease activity, 0006281 DNA repair; PDB: 3GA2_A 2W36_A 3HD0_A 2W35_B 3GOC_B.
Probab=26.52 E-value=1.2e+02 Score=26.65 Aligned_cols=40 Identities=23% Similarity=0.336 Sum_probs=26.4
Q ss_pred HHHHHHHhhc--CCCEEEECC--------CCChHHHHHHhCCCeEEEeCc
Q 017557 9 PAIEAIVRDI--KPNIVFFDF--------TYWLPSLARKLGIKSIAFVTV 48 (369)
Q Consensus 9 ~~l~~~l~~~--~pD~vI~D~--------~~~~~~~A~~lgiP~v~~~~~ 48 (369)
|.+.+++++. +||+|++|- +..|..++-.+++|++...=.
T Consensus 77 P~~l~~l~~l~~~~dvilvDG~G~~HpR~~GlA~HlGv~l~iPtIGVAK~ 126 (206)
T PF04493_consen 77 PCILEALEKLKNKPDVILVDGHGILHPRRFGLASHLGVLLDIPTIGVAKS 126 (206)
T ss_dssp HHHHHHHHTSSS--SCEEEES-SSSSTTS--HHHHHHHHHTS-EEEEESS
T ss_pred HHHHHHHHHhcccCCEEEEeCceeecCCCcChhheeeeccCCCEEEEeCc
Confidence 5666777765 699999995 223677888889999997533
No 323
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=26.19 E-value=1.2e+02 Score=26.41 Aligned_cols=42 Identities=17% Similarity=0.135 Sum_probs=29.8
Q ss_pred hhcHHHHHHHHhhc--CCCEEEE-CC--CCChHHHHHHhCCCeEEEe
Q 017557 5 DLTEPAIEAIVRDI--KPNIVFF-DF--TYWLPSLARKLGIKSIAFV 46 (369)
Q Consensus 5 ~~~~~~l~~~l~~~--~pD~vI~-D~--~~~~~~~A~~lgiP~v~~~ 46 (369)
+.+...+.+.+++. .+|+|+. +. .+++..+|+.+|+|++...
T Consensus 48 ~~~~~~la~~i~~~~~~~d~Ivgi~~gG~~~A~~la~~L~~~~~~~r 94 (202)
T PRK00455 48 ALLGRFLAEAIKDSGIEFDVVAGPATGGIPLAAAVARALDLPAIFVR 94 (202)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEecccCcHHHHHHHHHHhCCCEEEEe
Confidence 33444555555554 7898874 33 7789999999999998764
No 324
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=26.18 E-value=72 Score=31.19 Aligned_cols=33 Identities=21% Similarity=0.330 Sum_probs=25.6
Q ss_pred HHHHHHhhcCCCEEEECC-CCChHHHHHHhCCCeEEE
Q 017557 10 AIEAIVRDIKPNIVFFDF-TYWLPSLARKLGIKSIAF 45 (369)
Q Consensus 10 ~l~~~l~~~~pD~vI~D~-~~~~~~~A~~lgiP~v~~ 45 (369)
.+.+.+++.+||++|... .- .+|+++|||++..
T Consensus 349 e~~~~~~~~~pdliig~s~~~---~~a~~lgip~~~~ 382 (415)
T cd01977 349 EFFEILEMLKPDIILTGPRVG---ELVKKLHVPYVNI 382 (415)
T ss_pred HHHHHHHhcCCCEEEecCccc---hhhhhcCCCEEec
Confidence 445566777999999877 32 5899999999875
No 325
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=26.14 E-value=3.6e+02 Score=24.77 Aligned_cols=34 Identities=9% Similarity=0.000 Sum_probs=22.8
Q ss_pred EEEeeCCCcc---CCHHHHHHHHHHHHhcCCcEEEEE
Q 017557 178 IFCALGSECV---LKKDQFQELILGFELTGLPFFAAL 211 (369)
Q Consensus 178 v~vs~GS~~~---~~~~~~~~~~~~l~~~~~~~i~~~ 211 (369)
|.|-||.... .+......+.++|+..++++...-
T Consensus 3 v~v~~gg~s~e~~~sl~s~~~i~~al~~~g~~~~~i~ 39 (299)
T PRK14571 3 VALLMGGVSREREISLRSGERVKKALEKLGYEVTVFD 39 (299)
T ss_pred EEEEeCCCCCCccchHHHHHHHHHHHHHcCCeEEEEc
Confidence 4444555444 334567779999998999877764
No 326
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=26.06 E-value=84 Score=31.31 Aligned_cols=32 Identities=25% Similarity=0.397 Sum_probs=24.8
Q ss_pred HHHHHHhhcCCCEEEECCCCChHHHHHHhCCCeE
Q 017557 10 AIEAIVRDIKPNIVFFDFTYWLPSLARKLGIKSI 43 (369)
Q Consensus 10 ~l~~~l~~~~pD~vI~D~~~~~~~~A~~lgiP~v 43 (369)
.+.+.+++.+||++|... ....+|+++|||++
T Consensus 388 e~~~~~~~~~pDliig~s--~~~~~A~klgiP~v 419 (461)
T TIGR01860 388 EFFEVLDLIKPDVIFTGP--RVGELVKKLHIPYV 419 (461)
T ss_pred HHHHHHHhcCCCEEEeCC--cchhhHhhcCCCEE
Confidence 344566778999999886 33558999999997
No 327
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.59 E-value=82 Score=28.81 Aligned_cols=53 Identities=21% Similarity=0.425 Sum_probs=36.3
Q ss_pred CCCccceeecCCCchHHHHHHh-----CCcccccccccchhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHHHhc
Q 017557 251 HPSVGCFVTHCGSGSLSEAMVN-----ECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAVMD 325 (369)
Q Consensus 251 ~~~~~~~ItHgG~~s~~Eal~~-----GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ll~ 325 (369)
.+++ +|+=||=||+..++.. .+|++++-..+ ..|.. .+ ++.+++.++++++++
T Consensus 39 ~~D~--vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~G-------------~lGFL---~~----~~~~~~~~~l~~i~~ 96 (264)
T PRK03501 39 NANI--IVSIGGDGTFLQAVRKTGFREDCLYAGISTKD-------------QLGFY---CD----FHIDDLDKMIQAITK 96 (264)
T ss_pred CccE--EEEECCcHHHHHHHHHhcccCCCeEEeEecCC-------------CCeEc---cc----CCHHHHHHHHHHHHc
Confidence 3556 9999999999999874 56766664300 22333 22 567888888888886
No 328
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.45 E-value=1e+02 Score=28.73 Aligned_cols=53 Identities=19% Similarity=0.238 Sum_probs=38.0
Q ss_pred cCCCccceeecCCCchHHHHHH----hCCcccccccccchhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHHHhc
Q 017557 250 KHPSVGCFVTHCGSGSLSEAMV----NECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAVMD 325 (369)
Q Consensus 250 ~~~~~~~~ItHgG~~s~~Eal~----~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ll~ 325 (369)
..+++ +|+=||=||+.+++. .++|++++... ..|.. .+ ++.+++.++++++++
T Consensus 61 ~~~d~--vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G--------------~lGFl---~~----~~~~~~~~~l~~~~~ 117 (295)
T PRK01231 61 EVCDL--VIVVGGDGSLLGAARALARHNVPVLGINRG--------------RLGFL---TD----IRPDELEFKLAEVLD 117 (295)
T ss_pred cCCCE--EEEEeCcHHHHHHHHHhcCCCCCEEEEeCC--------------ccccc---cc----CCHHHHHHHHHHHHc
Confidence 34566 999999999999875 36788877541 22322 12 677889999999886
No 329
>PRK05114 hypothetical protein; Provisional
Probab=25.24 E-value=2e+02 Score=19.56 Aligned_cols=31 Identities=10% Similarity=0.153 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 017557 334 ARQNHAELREFLISPGLENSYVDGFVQELHS 364 (369)
Q Consensus 334 ~~~~a~~l~~~~~~~~~~~~~~~~~v~~l~~ 364 (369)
=.+.+.++.+++.++-++.+++.-..+++.+
T Consensus 13 QQ~AVErIq~LMaqGmSsgEAI~~VA~eiRe 43 (59)
T PRK05114 13 QQKAVERIQELMAQGMSSGEAIALVAEELRA 43 (59)
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHHH
Confidence 3444455555555555555555544444443
No 330
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=25.23 E-value=85 Score=28.41 Aligned_cols=33 Identities=18% Similarity=0.155 Sum_probs=25.8
Q ss_pred CCCEE-EECC--CCChHHHHHHhCCCeEEEeCchHH
Q 017557 19 KPNIV-FFDF--TYWLPSLARKLGIKSIAFVTVSPA 51 (369)
Q Consensus 19 ~pD~v-I~D~--~~~~~~~A~~lgiP~v~~~~~~~~ 51 (369)
.||+| |+|. ..-+..=|.++|||+|++.-+...
T Consensus 118 ~P~llIV~Dp~~d~qAI~EA~~lnIPvIal~DTds~ 153 (249)
T PTZ00254 118 EPRLLIVTDPRTDHQAIREASYVNIPVIALCDTDSP 153 (249)
T ss_pred CCCEEEEeCCCcchHHHHHHHHhCCCEEEEecCCCC
Confidence 48876 5788 557888899999999999865533
No 331
>PRK05858 hypothetical protein; Provisional
Probab=25.22 E-value=2.2e+02 Score=28.84 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=21.1
Q ss_pred cceeecCCC------chHHHHHHhCCcccccc
Q 017557 255 GCFVTHCGS------GSLSEAMVNECQLVLLP 280 (369)
Q Consensus 255 ~~~ItHgG~------~s~~Eal~~GvP~i~~P 280 (369)
++++.|.|- +++++|...++|+|++.
T Consensus 69 gv~~~t~GpG~~n~~~~i~~A~~~~~Pvl~i~ 100 (542)
T PRK05858 69 GVAVLTAGPGVTNGMSAMAAAQFNQSPLVVLG 100 (542)
T ss_pred eEEEEcCCchHHHHHHHHHHHHhcCCCEEEEe
Confidence 348888774 47889999999999985
No 332
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=25.16 E-value=1.9e+02 Score=24.19 Aligned_cols=51 Identities=10% Similarity=0.231 Sum_probs=33.6
Q ss_pred ceeEeCCCCCCCCCCCchhHHHhhhccCCCCceEEEeeCCCccCC-HHHHHHHHHHH
Q 017557 145 RVILAGPVLPEPPASVLEEEFEMLFSSFKAKSLIFCALGSECVLK-KDQFQELILGF 200 (369)
Q Consensus 145 ~~~~vGp~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~-~~~~~~~~~~l 200 (369)
.++++|.+.... ..++++.+||.+-..+.+. -|||.+..+ .+....+++..
T Consensus 41 D~i~lG~w~d~G---~~d~~~~~fl~~l~~KkV~--lF~T~G~~~~s~~~~~~~~~~ 92 (160)
T PF12641_consen 41 DLIFLGFWIDKG---TPDKDMKEFLKKLKGKKVA--LFGTAGAGPDSEYAKKILKNV 92 (160)
T ss_pred CEEEEEcCccCC---CCCHHHHHHHHHccCCeEE--EEEecCCCCchHHHHHHHHHH
Confidence 488999887542 4678888899887665443 367777643 45555565544
No 333
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=25.08 E-value=2.3e+02 Score=27.09 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHhcCCcEEEEECCC
Q 017557 190 KDQFQELILGFELTGLPFFAALKPP 214 (369)
Q Consensus 190 ~~~~~~~~~~l~~~~~~~i~~~~~~ 214 (369)
+.+++.++++|.+.|+.+.+.+...
T Consensus 10 p~~~~~la~~L~~~G~~v~~~~~~~ 34 (396)
T cd03818 10 PGQFRHLAPALAAQGHEVVFLTEPN 34 (396)
T ss_pred chhHHHHHHHHHHCCCEEEEEecCC
Confidence 3567889999988898887776544
No 334
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=24.98 E-value=98 Score=31.11 Aligned_cols=53 Identities=17% Similarity=0.250 Sum_probs=37.6
Q ss_pred cCCCccceeecCCCchHHHHHHh----CCcccccccccchhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHHHhc
Q 017557 250 KHPSVGCFVTHCGSGSLSEAMVN----ECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAVMD 325 (369)
Q Consensus 250 ~~~~~~~~ItHgG~~s~~Eal~~----GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ll~ 325 (369)
..+++ +|+=||=||++.+... ++|++++-+ - ..|... + ++.+++.++|+++++
T Consensus 261 ~~~Dl--VIsiGGDGTlL~Aar~~~~~~iPILGIN~-----------G---~LGFLt---~----i~~~e~~~~Le~il~ 317 (508)
T PLN02935 261 TKVDL--VITLGGDGTVLWAASMFKGPVPPVVPFSM-----------G---SLGFMT---P----FHSEQYRDCLDAILK 317 (508)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEeC-----------C---Ccceec---c----cCHHHHHHHHHHHHc
Confidence 34566 9999999999998763 567776631 0 244432 2 677888899988886
No 335
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=24.95 E-value=1.1e+02 Score=30.27 Aligned_cols=36 Identities=17% Similarity=0.098 Sum_probs=28.4
Q ss_pred HHHHHHHHhhcCCCEEEECCCCChHHHHHHhCCCeEEE
Q 017557 8 EPAIEAIVRDIKPNIVFFDFTYWLPSLARKLGIKSIAF 45 (369)
Q Consensus 8 ~~~l~~~l~~~~pD~vI~D~~~~~~~~A~~lgiP~v~~ 45 (369)
..++.+.+++.+||++|... ....+|+++|||++.+
T Consensus 384 ~~e~~~~i~~~~pDl~ig~~--~~~~~a~k~giP~i~~ 419 (456)
T TIGR01283 384 PRELLKLLLEYKADLLIAGG--KERYTALKLGIPFCDI 419 (456)
T ss_pred HHHHHHHHhhcCCCEEEEcc--chHHHHHhcCCCEEEc
Confidence 35677888888999999763 3467888999999875
No 336
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=24.79 E-value=98 Score=30.19 Aligned_cols=35 Identities=20% Similarity=0.218 Sum_probs=27.4
Q ss_pred HHHHHHHhhcCCCEEEECCCCChHHHHHHhCCCeEEE
Q 017557 9 PAIEAIVRDIKPNIVFFDFTYWLPSLARKLGIKSIAF 45 (369)
Q Consensus 9 ~~l~~~l~~~~pD~vI~D~~~~~~~~A~~lgiP~v~~ 45 (369)
.++.+.+++.+||++|... ....+|+++|||++..
T Consensus 346 ~e~~~~i~~~~pDl~ig~s--~~~~~a~~~gip~~~~ 380 (410)
T cd01968 346 RELKKLLKEKKADLLVAGG--KERYLALKLGIPFCDI 380 (410)
T ss_pred HHHHHHHhhcCCCEEEECC--cchhhHHhcCCCEEEc
Confidence 4566778888999999885 3357899999999843
No 337
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=24.78 E-value=3.7e+02 Score=23.73 Aligned_cols=38 Identities=8% Similarity=-0.053 Sum_probs=24.8
Q ss_pred CchHHHHHHhCCcccccccccc--hhHHHHHHhhhcceEEE
Q 017557 263 SGSLSEAMVNECQLVLLPNVGD--QIINSRLMGEDLKVGVE 301 (369)
Q Consensus 263 ~~s~~Eal~~GvP~i~~P~~~D--Q~~na~~v~~~~g~G~~ 301 (369)
++++..|+..|+|+.++|-..+ +..-...+-+. |+...
T Consensus 171 l~ta~~A~~~gr~v~~~pg~~~~~~~~G~~~Li~~-GA~~i 210 (220)
T TIGR00732 171 LITARYALEQGREVFAYPGDLNSPESDGCHKLIEQ-GAALI 210 (220)
T ss_pred HHHHHHHHHhCCcEEEEcCCCCCccchHHHHHHHC-CCEEE
Confidence 3566678899999999997543 22323444566 86543
No 338
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=24.65 E-value=89 Score=28.38 Aligned_cols=52 Identities=13% Similarity=0.235 Sum_probs=35.6
Q ss_pred CCCccceeecCCCchHHHHHH-hCCcccccccccchhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHHHhc
Q 017557 251 HPSVGCFVTHCGSGSLSEAMV-NECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAVMD 325 (369)
Q Consensus 251 ~~~~~~~ItHgG~~s~~Eal~-~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ll~ 325 (369)
++++ +|+=||=||+..++. .++|++++-.. ..|... + ++.+++.++++++++
T Consensus 41 ~~d~--vi~iGGDGT~L~a~~~~~~Pilgin~G--------------~lGfl~---~----~~~~~~~~~l~~~~~ 93 (256)
T PRK14075 41 TADL--IIVVGGDGTVLKAAKKVGTPLVGFKAG--------------RLGFLS---S----YTLEEIDRFLEDLKN 93 (256)
T ss_pred CCCE--EEEECCcHHHHHHHHHcCCCEEEEeCC--------------CCcccc---c----cCHHHHHHHHHHHHc
Confidence 4456 999999999998876 47777776421 122222 2 566778888888776
No 339
>TIGR00228 ruvC crossover junction endodeoxyribonuclease RuvC. Endonuclease that resolves Holliday junction intermediates in genetic recombination. The active form of the protein is a dimer. Structure studies reveals that the catalytic center, comprised of four acidic residues, lies at the bottom of a cleft that fits a DNA duplex. The model hits a single Synechocystis PCC6803 protein at a score of 30, below the trusted cutoff, that appears orthologous and may act as authentic RuvC.
Probab=24.54 E-value=1.3e+02 Score=25.07 Aligned_cols=47 Identities=11% Similarity=0.136 Sum_probs=35.1
Q ss_pred HhhcHHHHHHHHhhcCCCEEEECC-CCC---------------hHHHHHHhCCCeEEEeCchH
Q 017557 4 MDLTEPAIEAIVRDIKPNIVFFDF-TYW---------------LPSLARKLGIKSIAFVTVSP 50 (369)
Q Consensus 4 ~~~~~~~l~~~l~~~~pD~vI~D~-~~~---------------~~~~A~~lgiP~v~~~~~~~ 50 (369)
+..+...+++++++.+||.+..+- ++. ...++.+.|+|..-+.|.-.
T Consensus 42 L~~I~~~l~~~i~~y~P~~~aiE~~F~~~N~~sa~~lg~arGvilla~~~~~ipv~Ey~P~~v 104 (156)
T TIGR00228 42 LKLIYAGVTEIITQFQPNYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQV 104 (156)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeHHhhccCHHHHHHHHHHHHHHHHHHHHcCCCEEEECHHHH
Confidence 566888999999999999998886 431 24456677888887776543
No 340
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=24.48 E-value=52 Score=32.80 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=28.2
Q ss_pred HHHHHHHHhhcCCCEEEECCCCChHHHHHHhCCCeEE
Q 017557 8 EPAIEAIVRDIKPNIVFFDFTYWLPSLARKLGIKSIA 44 (369)
Q Consensus 8 ~~~l~~~l~~~~pD~vI~D~~~~~~~~A~~lgiP~v~ 44 (369)
..++++++++.+||++|.... ...+|+++|||+.-
T Consensus 393 ~~el~~~i~~~~pDl~ig~~~--~~~~a~k~gIP~~~ 427 (466)
T TIGR01282 393 HYEFEEFVEKLKPDLVGSGIK--EKYVFQKMGVPFRQ 427 (466)
T ss_pred HHHHHHHHHHhCCCEEEecCC--ccceeeecCCCccc
Confidence 457888888899999998872 25679999999843
No 341
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=24.33 E-value=1.2e+02 Score=26.55 Aligned_cols=38 Identities=11% Similarity=0.070 Sum_probs=27.2
Q ss_pred HHHHHHHHhhcCCCEEEE-CC--CCChHHHHHHhCCCeEEE
Q 017557 8 EPAIEAIVRDIKPNIVFF-DF--TYWLPSLARKLGIKSIAF 45 (369)
Q Consensus 8 ~~~l~~~l~~~~pD~vI~-D~--~~~~~~~A~~lgiP~v~~ 45 (369)
...+.+.+++..+|+|+. +. .+++..+|.++|+|.+..
T Consensus 56 ~~~l~~~~~~~~~d~IvG~~~~Gi~~A~~vA~~l~~p~~~~ 96 (206)
T PRK13809 56 ATLIWRLRPSFNSSLLCGVPYTALTLATSISLKYNIPMVLR 96 (206)
T ss_pred HHHHHHHhccCCCCEEEEecCccHHHHHHHHHHhCCCEEEE
Confidence 334444444457898874 44 778999999999998764
No 342
>PF03701 UPF0181: Uncharacterised protein family (UPF0181); InterPro: IPR005371 This family contains small proteins of about 50 amino acids of unknown function. The family includes YoaH P76260 from SWISSPROT.
Probab=24.30 E-value=2.2e+02 Score=18.85 Aligned_cols=32 Identities=13% Similarity=0.119 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Q 017557 334 ARQNHAELREFLISPGLENSYVDGFVQELHSL 365 (369)
Q Consensus 334 ~~~~a~~l~~~~~~~~~~~~~~~~~v~~l~~~ 365 (369)
=.+.+.++.+++..+-++.+++....+++.+.
T Consensus 13 QQ~AvE~Iq~LMaqGmSsgEAI~~VA~~iRe~ 44 (51)
T PF03701_consen 13 QQQAVERIQELMAQGMSSGEAIAIVAQEIREE 44 (51)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 34455555556665555566665555555543
No 343
>PF02433 FixO: Cytochrome C oxidase, mono-heme subunit/FixO; InterPro: IPR003468 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO) []. Cytochrome cbb3 oxidases are required both to support symbiotic nitrogen fixation, whilst ensuring that the oxygen-labile nitrogenase is not compromised. Cytochrome cbb3 oxidases consist of four subunits: FixN (or CcoN), FixO (or CcoO), FixP (or CcoP) and FixQ (or CcoQ). The catalytic core is comprised of subunits FixN, FixO and FixP, where FixN acts as the catalytic subunit, and Fix O and FixP are membrane-bound mono- and di-haem cytochromes c, respectively. The FixQ subunit protects the core complex in the presence of oxygen from proteolytic degradation []. This entry represents the mono-haem FixO subunit.
Probab=24.20 E-value=1.2e+02 Score=26.94 Aligned_cols=58 Identities=14% Similarity=0.123 Sum_probs=32.7
Q ss_pred cCHHHHHHHHHHHhccCCcchHHHHHHHHHHHHH-Hh---cCCCCHHHHHHHHHHHHhcccCC
Q 017557 311 FTRDGVCKAVKAVMDDDSEVGKDARQNHAELREF-LI---SPGLENSYVDGFVQELHSLADLM 369 (369)
Q Consensus 311 ~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~-~~---~~~~~~~~~~~~v~~l~~~~~~~ 369 (369)
.+.+.+.++...+-.+ .+....+..-+++.++. ++ ..++..+.++.||.||.+.|+.+
T Consensus 164 Y~~~~i~~a~~~~~~q-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~ALIAYLQ~LGt~v 225 (226)
T PF02433_consen 164 YTDEEIANAPADVEGQ-AKPIADADDLVERYKKAQARGFDGEPGEDTEIVALIAYLQRLGTDV 225 (226)
T ss_pred CCHHHHHHHHHHHHhc-ccccccHHHHHHHhhhhhhcccccCCCCccHHHHHHHHHHHccccC
Confidence 5667777777666542 11112122222222111 11 23556789999999999998864
No 344
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=24.15 E-value=1.2e+02 Score=27.54 Aligned_cols=40 Identities=20% Similarity=0.315 Sum_probs=27.7
Q ss_pred HHHHHHhhcCCCEEEECC-C-------------CChHHHHHHhCCCeEEEeCch
Q 017557 10 AIEAIVRDIKPNIVFFDF-T-------------YWLPSLARKLGIKSIAFVTVS 49 (369)
Q Consensus 10 ~l~~~l~~~~pD~vI~D~-~-------------~~~~~~A~~lgiP~v~~~~~~ 49 (369)
.+..++++.+||+||+-. . ..|+.=|..+|||.++++...
T Consensus 74 al~~l~~~~~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~~ 127 (252)
T COG0496 74 GLNELLKEPRPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLAY 127 (252)
T ss_pred HHHHhccCCCCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeehh
Confidence 456666677799999854 2 224455677899999987653
No 345
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=24.09 E-value=1.4e+02 Score=25.66 Aligned_cols=40 Identities=18% Similarity=0.149 Sum_probs=27.7
Q ss_pred hcHHHHHHHHhhc--CCCEEE-ECC--CCChHHHHHHhCCCeEEE
Q 017557 6 LTEPAIEAIVRDI--KPNIVF-FDF--TYWLPSLARKLGIKSIAF 45 (369)
Q Consensus 6 ~~~~~l~~~l~~~--~pD~vI-~D~--~~~~~~~A~~lgiP~v~~ 45 (369)
.+...+.+.+++. ++|+|| .+. .+++..+|..+|+|.+..
T Consensus 43 ~~~~~La~~i~~~~~~~d~Ivgi~~gGi~~A~~la~~L~~~~i~~ 87 (187)
T TIGR01367 43 ELGGELAQKILDYGLKVDFIVGPAMGGVILGYEVARQLSVRSIFA 87 (187)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEccCcHHHHHHHHHHhCCCeEEE
Confidence 3444455555544 789887 444 778899999999997654
No 346
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=24.09 E-value=44 Score=28.07 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=21.7
Q ss_pred ccceeecCCCc------hHHHHHHhCCcccccc
Q 017557 254 VGCFVTHCGSG------SLSEAMVNECQLVLLP 280 (369)
Q Consensus 254 ~~~~ItHgG~~------s~~Eal~~GvP~i~~P 280 (369)
.+++++|+|-| ++.||...++|+|++.
T Consensus 61 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 93 (162)
T cd07037 61 PVAVVCTSGTAVANLLPAVVEAYYSGVPLLVLT 93 (162)
T ss_pred CEEEEECCchHHHHHhHHHHHHHhcCCCEEEEE
Confidence 34488888844 6779999999999994
No 347
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=24.04 E-value=95 Score=31.41 Aligned_cols=30 Identities=13% Similarity=0.278 Sum_probs=24.2
Q ss_pred HHHHhhcCCCEEEECC-CCChHHHHHHhCCCeEE
Q 017557 12 EAIVRDIKPNIVFFDF-TYWLPSLARKLGIKSIA 44 (369)
Q Consensus 12 ~~~l~~~~pD~vI~D~-~~~~~~~A~~lgiP~v~ 44 (369)
.+.+++.+||++|... .- .+|+++|||++-
T Consensus 391 ~~~l~~~~~Dllig~s~~~---~~A~k~gIP~ld 421 (513)
T TIGR01861 391 LEAMEMLKPDIILTGKRPG---EVSKKMRVPYLN 421 (513)
T ss_pred HHHHHhcCCCEEEecCccc---hhHhhcCCCEEE
Confidence 3567778999999987 33 689999999965
No 348
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=24.00 E-value=1.1e+02 Score=31.14 Aligned_cols=27 Identities=26% Similarity=0.625 Sum_probs=22.1
Q ss_pred ccceeecCCCc------hHHHHHHhCCcccccc
Q 017557 254 VGCFVTHCGSG------SLSEAMVNECQLVLLP 280 (369)
Q Consensus 254 ~~~~ItHgG~~------s~~Eal~~GvP~i~~P 280 (369)
.+++++|.|-| +++||...++|+|++-
T Consensus 64 ~gv~~~t~GpG~~n~~~~l~~A~~~~~Pvl~i~ 96 (548)
T PRK08978 64 VGVCIATSGPGATNLITGLADALLDSVPVVAIT 96 (548)
T ss_pred CEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 44489998854 7789999999999994
No 349
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=23.48 E-value=1.8e+02 Score=26.40 Aligned_cols=42 Identities=14% Similarity=0.230 Sum_probs=33.0
Q ss_pred HHHHHHHHhhcCCCEEEECC-CC--ChHHHHHHhCCCeEEEeCch
Q 017557 8 EPAIEAIVRDIKPNIVFFDF-TY--WLPSLARKLGIKSIAFVTVS 49 (369)
Q Consensus 8 ~~~l~~~l~~~~pD~vI~D~-~~--~~~~~A~~lgiP~v~~~~~~ 49 (369)
...+.+.+++.+..||+++. .. .+..+|+..|+|.+.+.+..
T Consensus 206 l~~l~~~ik~~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~~~ 250 (266)
T cd01018 206 LKRLIDLAKEKGVRVVFVQPQFSTKSAEAIAREIGAKVVTIDPLA 250 (266)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHcCCeEEEeCCcH
Confidence 34566677778999999997 33 46789999999998887655
No 350
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=22.74 E-value=1.2e+02 Score=25.59 Aligned_cols=32 Identities=19% Similarity=0.162 Sum_probs=24.7
Q ss_pred hcCCCEEEECC---CCChHHHHHHh------CCCeEEEeCc
Q 017557 17 DIKPNIVFFDF---TYWLPSLARKL------GIKSIAFVTV 48 (369)
Q Consensus 17 ~~~pD~vI~D~---~~~~~~~A~~l------giP~v~~~~~ 48 (369)
+.+||+||+.- +.....+|+.+ |.+.|.+=+.
T Consensus 90 r~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES~ 130 (170)
T PF08660_consen 90 RERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIESF 130 (170)
T ss_pred HhCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEee
Confidence 34899999987 44567788888 8998886543
No 351
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=22.48 E-value=5.5e+02 Score=22.78 Aligned_cols=47 Identities=11% Similarity=0.002 Sum_probs=33.9
Q ss_pred hHHHhhhccCCCCceEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEE
Q 017557 163 EEFEMLFSSFKAKSLIFCALGSECVLKKDQFQELILGFELTGLPFFAA 210 (369)
Q Consensus 163 ~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~ 210 (369)
+.+..|+... .+.+.||=+-|..........+..++|+..|..+.-.
T Consensus 22 ~~i~n~l~g~-~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L 68 (224)
T COG3340 22 PFIANFLQGK-RKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSEL 68 (224)
T ss_pred HHHHHHhcCC-CceEEEEecCccccchHHHHHHHHHHHHHcCCeeeee
Confidence 3445555543 3569999998887766777888999998888776554
No 352
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=22.34 E-value=1.3e+02 Score=25.12 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=27.7
Q ss_pred hhcHHHHHHHHhhcCCCEEEE-CC--CCChHHHHHHhCCCeEE
Q 017557 5 DLTEPAIEAIVRDIKPNIVFF-DF--TYWLPSLARKLGIKSIA 44 (369)
Q Consensus 5 ~~~~~~l~~~l~~~~pD~vI~-D~--~~~~~~~A~~lgiP~v~ 44 (369)
+.+...+.+.+.+..+|+|+. +. ...+..+|+.+|+|++.
T Consensus 32 ~~~~~~la~~i~~~~~d~ivgi~~~G~~~A~~la~~L~~~~~~ 74 (169)
T TIGR01090 32 RFLIDLLVERYKDANIDYIVGPEARGFIFGAALAYKLGVGFVP 74 (169)
T ss_pred HHHHHHHHHHhccCCCCEEEeehhccHHHHHHHHHHHCCCEEE
Confidence 334445555555557898874 33 66789999999999864
No 353
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.10 E-value=96 Score=28.48 Aligned_cols=52 Identities=17% Similarity=0.289 Sum_probs=36.3
Q ss_pred CCCccceeecCCCchHHHHHH-hCCcccccccccchhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHHHhc
Q 017557 251 HPSVGCFVTHCGSGSLSEAMV-NECQLVLLPNVGDQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAVMD 325 (369)
Q Consensus 251 ~~~~~~~ItHgG~~s~~Eal~-~GvP~i~~P~~~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ll~ 325 (369)
.+++ +|+=||=||+..+.. ..+|++++-.. ..|... + ++.+++.++++++++
T Consensus 52 ~~D~--vi~lGGDGT~L~a~~~~~~PilGIN~G--------------~lGFL~---~----~~~~~~~~~l~~i~~ 104 (271)
T PRK01185 52 NADV--IITIGGDGTILRTLQRAKGPILGINMG--------------GLGFLT---E----IEIDEVGSAIKKLIR 104 (271)
T ss_pred CCCE--EEEEcCcHHHHHHHHHcCCCEEEEECC--------------CCccCc---c----cCHHHHHHHHHHHHc
Confidence 4566 999999999999887 35576666320 223222 2 677888888988887
No 354
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=21.87 E-value=1.4e+02 Score=24.62 Aligned_cols=48 Identities=13% Similarity=0.173 Sum_probs=30.2
Q ss_pred HhhcHHHHHHHHhhcCCCEEEECC-CCCh---------------HHHHHHhCCCeEEEeCchHH
Q 017557 4 MDLTEPAIEAIVRDIKPNIVFFDF-TYWL---------------PSLARKLGIKSIAFVTVSPA 51 (369)
Q Consensus 4 ~~~~~~~l~~~l~~~~pD~vI~D~-~~~~---------------~~~A~~lgiP~v~~~~~~~~ 51 (369)
+..+...+.+++++.+||.++.+- +... ..+|.+.|+|...+.|...-
T Consensus 43 l~~I~~~l~~li~~~~P~~vaiE~~f~~~n~~s~~~l~~arGvi~l~~~~~~i~v~~y~P~~vK 106 (149)
T PF02075_consen 43 LKEIYEELEELIEEYNPDEVAIEEIFFGKNPKSALKLGQARGVILLAAAQRGIPVFEYTPSEVK 106 (149)
T ss_dssp HHHHHHHHHHHHHHH--SEEEEEE-S----HHHHHHHHHHHHHHHHHHHTTT--EEEEEHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCEEEeehhhhccCHHHHHHHHHHHHHHHHHHHHcCCeEEEECHHHHH
Confidence 556788999999999999998886 4321 12445678888777766544
No 355
>cd01148 TroA_a Metal binding protein TroA_a. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=21.74 E-value=1e+02 Score=27.97 Aligned_cols=37 Identities=27% Similarity=0.529 Sum_probs=24.3
Q ss_pred HHHHHHHhhcCCCEEEECC-CCC------hHHHHHHhCCCeEEEe
Q 017557 9 PAIEAIVRDIKPNIVFFDF-TYW------LPSLARKLGIKSIAFV 46 (369)
Q Consensus 9 ~~l~~~l~~~~pD~vI~D~-~~~------~~~~A~~lgiP~v~~~ 46 (369)
+.++.++ +.+||+||.+. ... ....-++.|+|++.+.
T Consensus 70 ~n~E~I~-~l~PDlIi~~~~~~~~~~~~~~~~~L~~~gipv~~~~ 113 (284)
T cd01148 70 PSKETVL-AARPDLVFGGWSYGFDKGGLGTPDSLAELGIKTYILP 113 (284)
T ss_pred CCHHHHh-cCCCCEEEEecccccCCCCCCCHHHHHHCCCeEEECc
Confidence 3444433 57899999985 321 1345566899999875
No 356
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=21.69 E-value=1.5e+02 Score=30.44 Aligned_cols=27 Identities=19% Similarity=0.333 Sum_probs=22.1
Q ss_pred ccceeecCCC------chHHHHHHhCCcccccc
Q 017557 254 VGCFVTHCGS------GSLSEAMVNECQLVLLP 280 (369)
Q Consensus 254 ~~~~ItHgG~------~s~~Eal~~GvP~i~~P 280 (369)
.+++++|.|- +.+++|...++|+|++.
T Consensus 64 ~gv~~~t~GPG~~n~~~~i~~A~~~~~Pvl~I~ 96 (575)
T TIGR02720 64 IGVCFGSAGPGATHLLNGLYDAKEDHVPVLALV 96 (575)
T ss_pred ceEEEeCCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 4448999884 47789999999999994
No 357
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=21.65 E-value=7.2e+02 Score=23.84 Aligned_cols=126 Identities=13% Similarity=0.121 Sum_probs=73.1
Q ss_pred CCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhcCCCeeEecccChHHhhcCCCccceeecCC
Q 017557 183 GSECVLKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGRGFVHGGWVQQQLILKHPSVGCFVTHCG 262 (369)
Q Consensus 183 GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~ItHgG 262 (369)
|.-..-+.+++.++++.+...+.+++-......+ .-|.+|. ++-..++--...+.....+.++-+=..
T Consensus 124 Gpc~iE~~~~~~~~A~~lk~~g~~~~r~~~~kpR------tsp~~f~------g~~~e~l~~L~~~~~~~Gl~~~t~v~d 191 (360)
T PRK12595 124 GPCSVESYEQVEAVAKALKAKGLKLLRGGAFKPR------TSPYDFQ------GLGVEGLKILKQVADEYGLAVISEIVN 191 (360)
T ss_pred ecccccCHHHHHHHHHHHHHcCCcEEEccccCCC------CCCcccc------CCCHHHHHHHHHHHHHcCCCEEEeeCC
Confidence 4433346788888888888888877764332211 1111121 111111111122334444444555455
Q ss_pred CchHHHHHHhCCcccccccc-cchhHHHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHHHhc
Q 017557 263 SGSLSEAMVNECQLVLLPNV-GDQIINSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAVMD 325 (369)
Q Consensus 263 ~~s~~Eal~~GvP~i~~P~~-~DQ~~na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ll~ 325 (369)
..++-.+..+ ++++-||-. ..|+.-.+.+.+. |.=+.+.++. ..|.+++..+++.+..
T Consensus 192 ~~~~~~l~~~-vd~lkI~s~~~~n~~LL~~~a~~-gkPVilk~G~---~~t~~e~~~Ave~i~~ 250 (360)
T PRK12595 192 PADVEVALDY-VDVIQIGARNMQNFELLKAAGRV-NKPVLLKRGL---SATIEEFIYAAEYIMS 250 (360)
T ss_pred HHHHHHHHHh-CCeEEECcccccCHHHHHHHHcc-CCcEEEeCCC---CCCHHHHHHHHHHHHH
Confidence 5556666666 888888864 3556666777777 7777777652 2588999999988875
No 358
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=21.62 E-value=60 Score=27.24 Aligned_cols=28 Identities=14% Similarity=0.357 Sum_probs=21.1
Q ss_pred ccceeecCC------CchHHHHHHhCCccccccc
Q 017557 254 VGCFVTHCG------SGSLSEAMVNECQLVLLPN 281 (369)
Q Consensus 254 ~~~~ItHgG------~~s~~Eal~~GvP~i~~P~ 281 (369)
..++++|.| .+++.+|...++|+|.+.-
T Consensus 65 ~~v~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g 98 (172)
T PF02776_consen 65 PGVVIVTSGPGATNALTGLANAYADRIPVLVITG 98 (172)
T ss_dssp EEEEEEETTHHHHTTHHHHHHHHHTT-EEEEEEE
T ss_pred ceEEEeecccchHHHHHHHhhcccceeeEEEEec
Confidence 344888887 3577889999999999875
No 359
>PRK08236 hypothetical protein; Provisional
Probab=21.51 E-value=1e+02 Score=27.10 Aligned_cols=29 Identities=14% Similarity=0.267 Sum_probs=25.1
Q ss_pred CCEEEECC-CCChHHHHHHhCCCeEEEeCc
Q 017557 20 PNIVFFDF-TYWLPSLARKLGIKSIAFVTV 48 (369)
Q Consensus 20 pD~vI~D~-~~~~~~~A~~lgiP~v~~~~~ 48 (369)
|+.+..|+ ......+|+.+|||++.+-..
T Consensus 154 ~~a~~vdMEgaAvA~vc~~~~vPf~~iR~I 183 (212)
T PRK08236 154 PDAVAEAMEGFGVAEAAAAAGLPVLELRAI 183 (212)
T ss_pred CCceeehhHHHHHHHHHHHhCCCEEEEEEe
Confidence 68999999 888899999999999986543
No 360
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=21.45 E-value=5.4e+02 Score=22.32 Aligned_cols=47 Identities=15% Similarity=0.184 Sum_probs=30.8
Q ss_pred hhHHHhhhccC--CCCceEEEeeCCCccCCHHHHHHHHHHHHhc-CCcEEEE
Q 017557 162 EEEFEMLFSSF--KAKSLIFCALGSECVLKKDQFQELILGFELT-GLPFFAA 210 (369)
Q Consensus 162 ~~~~~~~l~~~--~~~~~v~vs~GS~~~~~~~~~~~~~~~l~~~-~~~~i~~ 210 (369)
.+.+.+++... ....++||...|. ...+....+.++++.. +..+...
T Consensus 17 ~~~l~~~l~~~~~~~~~i~~IptAs~--~~~~~~~~~~~a~~~l~G~~~~~~ 66 (212)
T cd03146 17 LPAIDDLLLSLTKARPKVLFVPTASG--DRDEYTARFYAAFESLRGVEVSHL 66 (212)
T ss_pred hHHHHHHHHHhccCCCeEEEECCCCC--CHHHHHHHHHHHHhhccCcEEEEE
Confidence 44555666654 3345888887776 3456677788888877 7765544
No 361
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=21.45 E-value=2.1e+02 Score=21.72 Aligned_cols=36 Identities=25% Similarity=0.449 Sum_probs=25.2
Q ss_pred HHHHHHHHhhcCCCEEEECC-CCCh--HHHHHHhCCCeE
Q 017557 8 EPAIEAIVRDIKPNIVFFDF-TYWL--PSLARKLGIKSI 43 (369)
Q Consensus 8 ~~~l~~~l~~~~pD~vI~D~-~~~~--~~~A~~lgiP~v 43 (369)
...+.+.++...+|+||.|. .... ..+.+.+|++++
T Consensus 46 ~eei~~~~~~~~~d~vvfd~~Lsp~Q~rNLe~~~~~~V~ 84 (95)
T PF13167_consen 46 VEEIKELIEELDADLVVFDNELSPSQQRNLEKALGVKVI 84 (95)
T ss_pred HHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHHHCCeee
Confidence 34666777777889999888 4433 457788887764
No 362
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=21.45 E-value=1.8e+02 Score=22.83 Aligned_cols=35 Identities=17% Similarity=0.198 Sum_probs=25.4
Q ss_pred eEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECC
Q 017557 177 LIFCALGSECVLKKDQFQELILGFELTGLPFFAALKP 213 (369)
Q Consensus 177 ~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~ 213 (369)
++++++||.+ .-.-+-.+.++|.+.|.++.+.+..
T Consensus 1 Ili~~~Gt~G--hv~P~lala~~L~~rGh~V~~~~~~ 35 (139)
T PF03033_consen 1 ILIATGGTRG--HVYPFLALARALRRRGHEVRLATPP 35 (139)
T ss_dssp EEEEEESSHH--HHHHHHHHHHHHHHTT-EEEEEETG
T ss_pred CEEEEcCChh--HHHHHHHHHHHHhccCCeEEEeecc
Confidence 4678888887 2333567889999999999877654
No 363
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=21.44 E-value=4.6e+02 Score=22.27 Aligned_cols=102 Identities=8% Similarity=0.013 Sum_probs=48.6
Q ss_pred hhHHHhhhccCCCCceEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhcCCCeeEec
Q 017557 162 EEEFEMLFSSFKAKSLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGRGFVHGG 241 (369)
Q Consensus 162 ~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~ 241 (369)
..++-++|...+ ..+|+.|.. .-.+.++.++..+.+-.++=+....... ...+..+ -. ..++..
T Consensus 21 A~~lG~~la~~g---~~lV~GGg~----~GlM~a~a~ga~~~gG~viGi~p~~l~~----~~~~~~~----~~-~~i~~~ 84 (178)
T TIGR00730 21 AAELGAYLAGQG---WGLVYGGGR----VGLMGAIADAAMENGGTAVGVNPSGLFS----GEVVHQN----LT-ELIEVN 84 (178)
T ss_pred HHHHHHHHHHCC---CEEEECCCh----HhHHHHHHHHHHhcCCeEEEecchhhhh----hhccCCC----CC-ceEEEC
Confidence 345667776543 556666641 2234556666655555544333211000 0000000 00 122223
Q ss_pred ccC-hHHh-hcCCCccceeecCCCchHHHHHH---------hCCcccccc
Q 017557 242 WVQ-QQLI-LKHPSVGCFVTHCGSGSLSEAMV---------NECQLVLLP 280 (369)
Q Consensus 242 ~~p-q~~l-L~~~~~~~~ItHgG~~s~~Eal~---------~GvP~i~~P 280 (369)
... -..+ ...++. +++--||.||+-|.+. +.+|++.+=
T Consensus 85 ~~~~Rk~~m~~~sda-~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n 133 (178)
T TIGR00730 85 GMHERKAMMAELADA-FIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFN 133 (178)
T ss_pred CHHHHHHHHHHhCCE-EEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEEC
Confidence 222 2233 334444 3555678899988743 488888874
No 364
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.42 E-value=2e+02 Score=26.82 Aligned_cols=30 Identities=10% Similarity=0.161 Sum_probs=24.1
Q ss_pred cCCCccceeecCCCchHHHHHHh----CCccccccc
Q 017557 250 KHPSVGCFVTHCGSGSLSEAMVN----ECQLVLLPN 281 (369)
Q Consensus 250 ~~~~~~~~ItHgG~~s~~Eal~~----GvP~i~~P~ 281 (369)
.++++ +|+-||=||+.+++.. ++|++++..
T Consensus 56 ~~~d~--vi~~GGDGT~l~~~~~~~~~~~pv~gin~ 89 (305)
T PRK02645 56 ELIDL--AIVLGGDGTVLAAARHLAPHDIPILSVNV 89 (305)
T ss_pred cCcCE--EEEECCcHHHHHHHHHhccCCCCEEEEec
Confidence 34566 9999999999999763 788888864
No 365
>PRK07164 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Provisional
Probab=21.37 E-value=91 Score=27.57 Aligned_cols=37 Identities=27% Similarity=0.362 Sum_probs=28.5
Q ss_pred HHHHhhcCCCEEEECC-CCChHHHHHHhCCCeEEEeCch
Q 017557 12 EAIVRDIKPNIVFFDF-TYWLPSLARKLGIKSIAFVTVS 49 (369)
Q Consensus 12 ~~~l~~~~pD~vI~D~-~~~~~~~A~~lgiP~v~~~~~~ 49 (369)
.+.+++. |++.++|+ ......+|+++|+|++.+-..+
T Consensus 147 ~~~l~~~-~~a~~vDME~aAiaqv~~~~~vpf~~ir~IS 184 (218)
T PRK07164 147 LKIIKDF-IFVSFFDMEAFALAQVCFKNKVKFYCIKYVS 184 (218)
T ss_pred HHHHHhc-CCCcEEEchHHHHHHHHHHcCCCEEEEEEEc
Confidence 3334433 68888999 8888999999999999975443
No 366
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=21.32 E-value=3.1e+02 Score=25.10 Aligned_cols=28 Identities=18% Similarity=0.323 Sum_probs=20.6
Q ss_pred CCccceeecCCCchHHHHHHh-----CCcccc-ccc
Q 017557 252 PSVGCFVTHCGSGSLSEAMVN-----ECQLVL-LPN 281 (369)
Q Consensus 252 ~~~~~~ItHgG~~s~~Eal~~-----GvP~i~-~P~ 281 (369)
+++ +|.-||=||+.|++.. ..|.++ +|.
T Consensus 58 ~d~--ivv~GGDGTl~~v~~~l~~~~~~~~lgiiP~ 91 (293)
T TIGR00147 58 VDT--VIAGGGDGTINEVVNALIQLDDIPALGILPL 91 (293)
T ss_pred CCE--EEEECCCChHHHHHHHHhcCCCCCcEEEEcC
Confidence 445 9999999999996643 345555 886
No 367
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.17 E-value=2.1e+02 Score=24.06 Aligned_cols=31 Identities=23% Similarity=0.298 Sum_probs=23.8
Q ss_pred CCCEEEECC-CC----------ChHHHHHHhCCCeEEEeCch
Q 017557 19 KPNIVFFDF-TY----------WLPSLARKLGIKSIAFVTVS 49 (369)
Q Consensus 19 ~pD~vI~D~-~~----------~~~~~A~~lgiP~v~~~~~~ 49 (369)
+||+|+..- +. -+..+|+++|+|++-.+.+.
T Consensus 124 ~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~t 165 (219)
T KOG0081|consen 124 NPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACT 165 (219)
T ss_pred CCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeecccc
Confidence 799999764 32 26789999999999876554
No 368
>PRK13054 lipid kinase; Reviewed
Probab=21.09 E-value=3.6e+02 Score=24.88 Aligned_cols=68 Identities=13% Similarity=0.233 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhcCCcEEEEECCCCCCCccccCCchhHHHHhcCCCeeEecccChHHhhcCCCccceeecCCCchHHHH
Q 017557 190 KDQFQELILGFELTGLPFFAALKPPTGHDTIESALPEGFEERVKGRGFVHGGWVQQQLILKHPSVGCFVTHCGSGSLSEA 269 (369)
Q Consensus 190 ~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~ItHgG~~s~~Ea 269 (369)
...+.+++..|...+..+.+...... ... ..+ +-+ ......++ +|.-||=||+.|.
T Consensus 17 ~~~~~~~~~~l~~~g~~~~v~~t~~~------~~a-~~~--------------a~~-~~~~~~d~--vvv~GGDGTl~ev 72 (300)
T PRK13054 17 NEELREAVGLLREEGHTLHVRVTWEK------GDA-ARY--------------VEE-ALALGVAT--VIAGGGDGTINEV 72 (300)
T ss_pred hHHHHHHHHHHHHcCCEEEEEEecCC------CcH-HHH--------------HHH-HHHcCCCE--EEEECCccHHHHH
Confidence 35566777778877777655433210 110 111 111 11233445 9999999999998
Q ss_pred HHh------C--Cccccccc
Q 017557 270 MVN------E--CQLVLLPN 281 (369)
Q Consensus 270 l~~------G--vP~i~~P~ 281 (369)
+.. + +|+-++|.
T Consensus 73 v~~l~~~~~~~~~~lgiiP~ 92 (300)
T PRK13054 73 ATALAQLEGDARPALGILPL 92 (300)
T ss_pred HHHHHhhccCCCCcEEEEeC
Confidence 754 3 58888896
No 369
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=21.04 E-value=76 Score=29.36 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=32.2
Q ss_pred cCCCchHH--HHHHhCCcccccccccchhHHHHH-HhhhcceE
Q 017557 260 HCGSGSLS--EAMVNECQLVLLPNVGDQIINSRL-MGEDLKVG 299 (369)
Q Consensus 260 HgG~~s~~--Eal~~GvP~i~~P~~~DQ~~na~~-v~~~~g~G 299 (369)
-||||+++ -|-.+||-++++-+...|..+++. +.+. |.-
T Consensus 80 GCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~-gl~ 121 (283)
T COG2230 80 GCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAAR-GLE 121 (283)
T ss_pred CCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHc-CCC
Confidence 47888765 455579999999999999999976 7777 888
No 370
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=20.91 E-value=2.4e+02 Score=23.29 Aligned_cols=24 Identities=8% Similarity=0.362 Sum_probs=20.8
Q ss_pred HhhcHHHHHHHHhhcCCCEEEECC
Q 017557 4 MDLTEPAIEAIVRDIKPNIVFFDF 27 (369)
Q Consensus 4 ~~~~~~~l~~~l~~~~pD~vI~D~ 27 (369)
+..+...++++++..+||.++.+-
T Consensus 44 l~~I~~~l~~~i~~~~Pd~vaiE~ 67 (154)
T cd00529 44 LKTIYDGLNEVIDQFQPDVVAIER 67 (154)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEE
Confidence 556788999999999999999887
No 371
>PRK08617 acetolactate synthase; Reviewed
Probab=20.84 E-value=1.9e+02 Score=29.38 Aligned_cols=27 Identities=19% Similarity=0.242 Sum_probs=21.7
Q ss_pred ccceeecCCC------chHHHHHHhCCcccccc
Q 017557 254 VGCFVTHCGS------GSLSEAMVNECQLVLLP 280 (369)
Q Consensus 254 ~~~~ItHgG~------~s~~Eal~~GvP~i~~P 280 (369)
.+++++|.|- +++.||...++|+|++-
T Consensus 68 ~gv~~vt~GpG~~N~l~gl~~A~~~~~Pvlvis 100 (552)
T PRK08617 68 PGVVLVTSGPGVSNLATGLVTATAEGDPVVAIG 100 (552)
T ss_pred CEEEEECCCCcHhHhHHHHHHHhhcCCCEEEEe
Confidence 4448888774 47889999999999984
No 372
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=20.74 E-value=2.9e+02 Score=20.50 Aligned_cols=34 Identities=18% Similarity=0.130 Sum_probs=22.3
Q ss_pred eEEEeeCCCccCCHHHHHHHHHHHHhc--CCcEEEE
Q 017557 177 LIFCALGSECVLKKDQFQELILGFELT--GLPFFAA 210 (369)
Q Consensus 177 ~v~vs~GS~~~~~~~~~~~~~~~l~~~--~~~~i~~ 210 (369)
+|+++.||........+.++.+.+++. +.++-+.
T Consensus 2 ivlv~hGS~~~~~~~~~~~l~~~l~~~~~~~~v~~a 37 (101)
T cd03416 2 LLLVGHGSRDPRAAEALEALAERLRERLPGDEVELA 37 (101)
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHhhCCCCcEEEE
Confidence 788999998754445677788887643 3444444
No 373
>PRK08266 hypothetical protein; Provisional
Probab=20.72 E-value=1.9e+02 Score=29.28 Aligned_cols=27 Identities=22% Similarity=0.230 Sum_probs=22.0
Q ss_pred ccceeecCCCc------hHHHHHHhCCcccccc
Q 017557 254 VGCFVTHCGSG------SLSEAMVNECQLVLLP 280 (369)
Q Consensus 254 ~~~~ItHgG~~------s~~Eal~~GvP~i~~P 280 (369)
.+++++|.|-| ++.||...++|+|++-
T Consensus 69 ~~v~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~ 101 (542)
T PRK08266 69 PGVCSVVPGPGVLNAGAALLTAYGCNSPVLCLT 101 (542)
T ss_pred CeEEEECCCCcHHHHHHHHHHHHhhCCCEEEEe
Confidence 34488888854 7889999999999984
No 374
>PF12363 DUF3647: Phage protein ; InterPro: IPR024410 Proteins in this entry are frequently annotated as phage proteins, however there is little accompanying literature to back this up or to describe the nature of these phage proteins.
Probab=20.69 E-value=1.5e+02 Score=23.10 Aligned_cols=63 Identities=13% Similarity=0.200 Sum_probs=38.9
Q ss_pred HHHHHhhhcceEEEEeecCCCCccCHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 017557 288 NSRLMGEDLKVGVEVERGDEDGLFTRDGVCKAVKAVMDDDSEVGKDARQNHAELREFLISPGLENSYVDGF 358 (369)
Q Consensus 288 na~~v~~~~g~G~~l~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~ 358 (369)
|...+.+.|-++..-.... .|.++|.++|.++.++ ...+-+=...+-+.+.+++-....+..+
T Consensus 49 d~~al~d~i~~a~~~~~~~----~s~~eIe~~ie~~~e~----~~~~~~l~~~vl~el~~s~~~k~~~k~~ 111 (113)
T PF12363_consen 49 DPVALADIIYAATAHEKKR----PSREEIEDYIEDIIED----EDDIEELFDEVLKELKKSNFFKRAVKKF 111 (113)
T ss_pred CHHHHHHHHHHHhcccCCC----CCHHHHHHHHHHHHhc----chhHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 3334445556665555444 7999999999998772 2336666666666666555444444433
No 375
>cd00636 TroA-like Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site is formed in the interface between two globular domains linked by a single helix. Many of these proteins also possess a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence). The TroA-like proteins differ in their fold and ligand-binding mechanism from the PBPI and PBPII proteins, but are structurally similar, however, to the beta-subunit of the nitrogenase molybdenum-iron protein MoFe. Most TroA-like proteins are encoded by ABC-type operons and appear to function as periplasmic components of ABC transporters in metal ion uptake.
Probab=20.65 E-value=1.8e+02 Score=22.38 Aligned_cols=39 Identities=18% Similarity=0.295 Sum_probs=25.5
Q ss_pred HHHHHHHhhcCCCEEEECCCCC--hHHHHHHhCCCeEEEeCc
Q 017557 9 PAIEAIVRDIKPNIVFFDFTYW--LPSLARKLGIKSIAFVTV 48 (369)
Q Consensus 9 ~~l~~~l~~~~pD~vI~D~~~~--~~~~A~~lgiP~v~~~~~ 48 (369)
+.++.+++ .+||+||+-.... .....++.|+|.+.+...
T Consensus 52 ~~~E~l~~-l~pDlvi~~~~~~~~~~~~l~~~~i~~~~~~~~ 92 (148)
T cd00636 52 PNLEKIAA-LKPDLIIANGSGLEAWLDKLSKIAIPVVVVDEA 92 (148)
T ss_pred CCHHHHhc-cCCCEEEEecccchhHHHHHHHhCCCEEEECCC
Confidence 44455554 4999998765222 355567788999887654
No 376
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=20.59 E-value=41 Score=29.88 Aligned_cols=38 Identities=18% Similarity=0.240 Sum_probs=28.6
Q ss_pred HHhhcCCCEEE-ECC--CCChHHHHHHhCCCeEEEeCchHH
Q 017557 14 IVRDIKPNIVF-FDF--TYWLPSLARKLGIKSIAFVTVSPA 51 (369)
Q Consensus 14 ~l~~~~pD~vI-~D~--~~~~~~~A~~lgiP~v~~~~~~~~ 51 (369)
++....+|||| .|. ...+..=|.+++||+|.+.-+.+.
T Consensus 168 f~~t~~~D~vvvln~~e~~sAilEA~K~~IPTIgIVDtN~~ 208 (251)
T KOG0832|consen 168 FLPTLTPDLVVVLNPEENHSAILEAAKMAIPTIGIVDTNCN 208 (251)
T ss_pred ecccCCcceeEecCcccccHHHHHHHHhCCCeEEEecCCCC
Confidence 34445689875 576 667888899999999998866553
No 377
>COG3200 AroG 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=20.52 E-value=3.6e+02 Score=25.82 Aligned_cols=51 Identities=16% Similarity=0.264 Sum_probs=35.9
Q ss_pred hhHHHhhhcc---C--CCCceEEEeeCCCccCCHHHHHHHHHHHHhcCCcEEEEECCC
Q 017557 162 EEEFEMLFSS---F--KAKSLIFCALGSECVLKKDQFQELILGFELTGLPFFAALKPP 214 (369)
Q Consensus 162 ~~~~~~~l~~---~--~~~~~v~vs~GS~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~ 214 (369)
++++.+.+|. . +.+-++++-||+.. -.+.+..++++++..+.++||+..+-
T Consensus 296 ~d~ll~l~d~LnP~nepGRLtLi~RmG~dK--V~d~LP~li~av~~eG~~VvWs~DPM 351 (445)
T COG3200 296 PDELLELIDRLNPHNEPGRLTLIARMGADK--VGDRLPPLVEAVEAEGHQVIWSSDPM 351 (445)
T ss_pred HHHHHHHHHhcCCCCCCceEEeehhhcchH--HhhhhhHHHHHHHHcCCceEEecCCC
Confidence 4555555553 1 22347777787764 35778899999999999999997653
No 378
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=20.44 E-value=1.9e+02 Score=28.10 Aligned_cols=87 Identities=10% Similarity=-0.005 Sum_probs=55.5
Q ss_pred CCeeEecccCh----HHhhcCCCccceeecCCCchHHHHHHhCCcccccccccchhHHHHHHhhhcceE-EEEeecCCCC
Q 017557 235 RGFVHGGWVQQ----QLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINSRLMGEDLKVG-VEVERGDEDG 309 (369)
Q Consensus 235 ~~~~v~~~~pq----~~lL~~~~~~~~ItHgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~v~~~~g~G-~~l~~~~~~~ 309 (369)
.++++. -.++ ..+++++++ +|. .=+-|+.=|++.|+|.|++-+. +.+....++. |.- ..++...
T Consensus 266 ~~i~~~-~d~~~~~~~~~l~~~dl--~Vg-~R~HsaI~al~~g~p~i~i~Y~---~K~~~l~~~~-gl~~~~~~i~~--- 334 (385)
T COG2327 266 AEILVS-SDEYAEELGGILAACDL--IVG-MRLHSAIMALAFGVPAIAIAYD---PKVRGLMQDL-GLPGFAIDIDP--- 334 (385)
T ss_pred cceEee-cchHHHHHHHHhccCce--EEe-ehhHHHHHHHhcCCCeEEEeec---HHHHHHHHHc-CCCcccccCCC---
Confidence 455553 2334 447777776 664 2245788899999999998653 3444555555 543 3344444
Q ss_pred ccCHHHHHHHHHHHhccCCcchHHHHHH
Q 017557 310 LFTRDGVCKAVKAVMDDDSEVGKDARQN 337 (369)
Q Consensus 310 ~~~~~~l~~ai~~ll~~~~~~~~~~~~~ 337 (369)
++.+.+...+.+.+++ .+..+++
T Consensus 335 -~~~~~l~~~~~e~~~~----~~~~~~~ 357 (385)
T COG2327 335 -LDAEILSAVVLERLTK----LDELRER 357 (385)
T ss_pred -CchHHHHHHHHHHHhc----cHHHHhh
Confidence 8899999999888874 4555544
No 379
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=20.42 E-value=3.7e+02 Score=22.56 Aligned_cols=99 Identities=14% Similarity=0.097 Sum_probs=52.8
Q ss_pred HHHHHHHHhhc--cCceeeeccccchhhhhhhhhhhhcCcceeEeCCCCCCCCCCCchhHHHhhhccCCCCceEEEeeCC
Q 017557 107 SFMERLLLCLT--ECDAIGFKTCREIEGAYCDCVESQFEKRVILAGPVLPEPPASVLEEEFEMLFSSFKAKSLIFCALGS 184 (369)
Q Consensus 107 ~~~~~~~~~~~--~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS 184 (369)
..+..+.+... +....++-+.++--....+.++..+| ++..+|-....-. ...++++.+.+...+++ +|+|++|+
T Consensus 33 dl~~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l~~~yp-~l~i~g~~~g~~~-~~~~~~i~~~I~~~~pd-iv~vglG~ 109 (171)
T cd06533 33 DLMPALLELAAQKGLRVFLLGAKPEVLEKAAERLRARYP-GLKIVGYHHGYFG-PEEEEEIIERINASGAD-ILFVGLGA 109 (171)
T ss_pred HHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCC-CcEEEEecCCCCC-hhhHHHHHHHHHHcCCC-EEEEECCC
Confidence 34444444433 24566666666554444455555554 6777774333221 11234466666665433 99999988
Q ss_pred CccCCHHHHHHHHHHHH-hcCCcEEEEECCC
Q 017557 185 ECVLKKDQFQELILGFE-LTGLPFFAALKPP 214 (369)
Q Consensus 185 ~~~~~~~~~~~~~~~l~-~~~~~~i~~~~~~ 214 (369)
--+ +.++.... ..+..++..+|..
T Consensus 110 PkQ------E~~~~~~~~~l~~~v~~~vG~~ 134 (171)
T cd06533 110 PKQ------ELWIARHKDRLPVPVAIGVGGS 134 (171)
T ss_pred CHH------HHHHHHHHHHCCCCEEEEecee
Confidence 641 22333322 3356677777654
No 380
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=20.37 E-value=1.9e+02 Score=24.57 Aligned_cols=31 Identities=10% Similarity=0.027 Sum_probs=26.8
Q ss_pred cCCCEEEECC-CCChHHHHHHh-CCCeEEEeCc
Q 017557 18 IKPNIVFFDF-TYWLPSLARKL-GIKSIAFVTV 48 (369)
Q Consensus 18 ~~pD~vI~D~-~~~~~~~A~~l-giP~v~~~~~ 48 (369)
..||+||... ...+.-+-..+ ++|.+.+.=.
T Consensus 65 f~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~E~ 97 (171)
T PF12000_consen 65 FVPDVIIAHPGWGETLFLKDVFPDAPLIGYFEF 97 (171)
T ss_pred CCCCEEEEcCCcchhhhHHHhCCCCcEEEEEEE
Confidence 3799999999 88889999999 9999997643
No 381
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=20.24 E-value=1.9e+02 Score=27.84 Aligned_cols=11 Identities=9% Similarity=0.416 Sum_probs=9.1
Q ss_pred hCCcccccccc
Q 017557 272 NECQLVLLPNV 282 (369)
Q Consensus 272 ~GvP~i~~P~~ 282 (369)
.++|+|.+|-.
T Consensus 129 ~~~P~i~IPTT 139 (379)
T TIGR02638 129 PGVPIIAIPTT 139 (379)
T ss_pred CCCCEEEECCC
Confidence 46899999985
No 382
>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal S2 proteins have been shown to belong to a family that includes 40S ribosomal subunit 40kDa proteins, putative laminin-binding proteins, NAB-1 protein and 29.3kDa protein from Haloarcula marismortui [, ]. The laminin-receptor proteins are thus predicted to be the eukaryotic homologue of the eubacterial S2 risosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QNH_c 3MR8_B 3PYS_B 3MS0_B 3PYN_B 1VOZ_B 2OW8_c 3PYQ_B 3D5C_B 3PYU_B ....
Probab=20.08 E-value=90 Score=27.43 Aligned_cols=33 Identities=30% Similarity=0.297 Sum_probs=24.5
Q ss_pred CCCEEE-ECC--CCChHHHHHHhCCCeEEEeCchHH
Q 017557 19 KPNIVF-FDF--TYWLPSLARKLGIKSIAFVTVSPA 51 (369)
Q Consensus 19 ~pD~vI-~D~--~~~~~~~A~~lgiP~v~~~~~~~~ 51 (369)
.||+|| .|. ...+..=|.++|||.+++..+...
T Consensus 143 ~P~~vii~~~~~~~~~i~Ea~~l~IP~i~i~Dtn~~ 178 (211)
T PF00318_consen 143 LPDLVIILDPNKNKNAIREANKLNIPTIAIVDTNCN 178 (211)
T ss_dssp SBSEEEESSTTTTHHHHHHHHHTTS-EEEEESTTS-
T ss_pred cCcEEEEecccccchhHHHHHhcCceEEEeecCCCC
Confidence 389875 676 567788899999999999866544
No 383
>cd08806 CARD_CARD14_CARMA2 Caspase activation and recruitment domain of CARD14-like proteins. Caspase activation and recruitment domain (CARD) similar to that found in CARD14, also known as BIMP2 or CARMA2 (caspase recruitment domain-containing membrane-associated guanylate kinase protein 2). CARD14 has been identified as a novel member of the MAGUK (membrane-associated guanylate kinase) family that functions as upstream activators of BCL10 (B-cell lymphoma 10) and NF-kB signaling. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways
Probab=20.01 E-value=2.5e+02 Score=20.89 Aligned_cols=36 Identities=17% Similarity=0.290 Sum_probs=26.1
Q ss_pred HHHhccCCcchHHHHHHHHH---HHHHHhcCCCCHHHHHHHHHHHH
Q 017557 321 KAVMDDDSEVGKDARQNHAE---LREFLISPGLENSYVDGFVQELH 363 (369)
Q Consensus 321 ~~ll~~~~~~~~~~~~~a~~---l~~~~~~~~~~~~~~~~~v~~l~ 363 (369)
++|++ .+.+..++.+ |=++++..| .++...|++.++
T Consensus 37 eeIls-----~~t~~~r~~k~g~LLDIL~trG--~~g~~aFLeSLe 75 (86)
T cd08806 37 EEVLH-----SPRLTNRAMRVGHLLDLLKTRG--KNGAIAFLESLK 75 (86)
T ss_pred HHHHc-----cchHHHHHHHHHHHHHHHHhcC--chHHHHHHHHHH
Confidence 46676 6777777777 666777655 677888888776
Done!