Query 017559
Match_columns 369
No_of_seqs 244 out of 3819
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 09:39:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017559.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017559hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 4.2E-27 9.1E-32 240.3 15.3 216 3-218 147-369 (968)
2 PLN00113 leucine-rich repeat r 99.9 1.8E-26 4E-31 235.6 16.8 282 2-283 170-486 (968)
3 PLN03210 Resistant to P. syrin 99.9 1E-24 2.2E-29 223.7 18.0 314 12-337 580-949 (1153)
4 KOG0444 Cytoskeletal regulator 99.9 3.8E-26 8.3E-31 205.9 -2.7 274 12-289 95-379 (1255)
5 PLN03210 Resistant to P. syrin 99.9 1.4E-22 3.1E-27 208.0 23.0 271 8-289 600-910 (1153)
6 KOG4194 Membrane glycoprotein 99.9 1.2E-25 2.5E-30 201.1 0.1 308 9-318 114-464 (873)
7 KOG4194 Membrane glycoprotein 99.9 6.3E-25 1.4E-29 196.4 3.5 244 17-261 100-351 (873)
8 KOG0444 Cytoskeletal regulator 99.9 1.1E-24 2.3E-29 196.7 -3.3 258 7-267 113-378 (1255)
9 KOG0472 Leucine-rich repeat pr 99.8 8.7E-23 1.9E-27 175.3 -5.8 240 16-262 65-308 (565)
10 KOG0472 Leucine-rich repeat pr 99.8 2.9E-21 6.3E-26 166.0 -7.9 258 19-283 45-308 (565)
11 PRK15370 E3 ubiquitin-protein 99.8 1.4E-17 3.1E-22 161.3 14.9 241 19-283 178-426 (754)
12 PRK15387 E3 ubiquitin-protein 99.8 1.8E-17 4E-22 159.7 15.2 227 8-261 212-455 (788)
13 KOG0618 Serine/threonine phosp 99.7 8.9E-20 1.9E-24 171.7 -1.4 264 17-286 217-490 (1081)
14 PRK15370 E3 ubiquitin-protein 99.7 9.4E-18 2E-22 162.5 10.1 233 8-262 189-426 (754)
15 PRK15387 E3 ubiquitin-protein 99.7 2.1E-16 4.6E-21 152.5 15.4 236 20-289 202-438 (788)
16 KOG0618 Serine/threonine phosp 99.7 1.3E-18 2.9E-23 163.9 -5.0 242 16-263 238-488 (1081)
17 KOG0617 Ras suppressor protein 99.7 4.3E-18 9.3E-23 130.3 -1.7 172 5-180 19-194 (264)
18 cd00116 LRR_RI Leucine-rich re 99.6 6.3E-17 1.4E-21 145.0 -0.1 221 41-261 24-288 (319)
19 KOG0617 Ras suppressor protein 99.6 1.2E-17 2.6E-22 127.9 -5.3 160 41-226 34-194 (264)
20 KOG4237 Extracellular matrix p 99.6 4E-16 8.7E-21 134.3 1.6 257 24-283 51-357 (498)
21 cd00116 LRR_RI Leucine-rich re 99.6 4.5E-16 9.8E-21 139.5 0.7 237 45-282 3-288 (319)
22 KOG4237 Extracellular matrix p 99.5 5.2E-15 1.1E-19 127.6 -0.9 254 7-262 56-357 (498)
23 KOG4658 Apoptotic ATPase [Sign 99.4 4.2E-13 9E-18 132.5 6.6 297 8-307 512-843 (889)
24 KOG4341 F-box protein containi 99.4 2.4E-15 5.1E-20 130.5 -8.2 295 41-348 139-456 (483)
25 KOG4658 Apoptotic ATPase [Sign 99.3 2.6E-12 5.6E-17 127.0 4.7 257 32-291 513-789 (889)
26 KOG4341 F-box protein containi 99.2 1.3E-13 2.8E-18 119.9 -5.5 299 20-335 139-468 (483)
27 COG4886 Leucine-rich repeat (L 99.1 1.2E-10 2.6E-15 107.5 7.5 193 67-264 97-290 (394)
28 KOG3207 Beta-tubulin folding c 99.1 1.7E-11 3.8E-16 107.4 1.6 202 60-261 118-336 (505)
29 PF14580 LRR_9: Leucine-rich r 99.1 3.7E-11 7.9E-16 95.9 2.1 128 155-289 15-146 (175)
30 KOG1909 Ran GTPase-activating 99.1 1E-11 2.2E-16 105.9 -1.6 221 41-262 31-309 (382)
31 KOG3207 Beta-tubulin folding c 99.1 5.7E-11 1.2E-15 104.3 2.4 201 41-241 122-339 (505)
32 KOG0532 Leucine-rich repeat (L 99.0 2.4E-11 5.2E-16 109.9 -0.7 211 45-261 55-270 (722)
33 COG4886 Leucine-rich repeat (L 99.0 5.2E-10 1.1E-14 103.3 7.7 195 45-244 98-293 (394)
34 PF14580 LRR_9: Leucine-rich r 99.0 4.4E-10 9.6E-15 89.7 5.4 133 9-144 9-149 (175)
35 KOG0532 Leucine-rich repeat (L 99.0 1.8E-11 3.8E-16 110.8 -4.1 192 86-283 74-271 (722)
36 KOG1259 Nischarin, modulator o 99.0 5.8E-11 1.3E-15 99.5 -1.8 123 136-261 285-409 (490)
37 KOG1909 Ran GTPase-activating 98.9 4.7E-10 1E-14 96.0 3.1 150 133-283 90-281 (382)
38 KOG1259 Nischarin, modulator o 98.9 3.1E-10 6.7E-15 95.2 1.0 126 155-283 280-410 (490)
39 KOG2120 SCF ubiquitin ligase, 98.8 1.5E-10 3.2E-15 97.0 -5.8 172 112-284 186-375 (419)
40 KOG2120 SCF ubiquitin ligase, 98.7 1.8E-10 3.9E-15 96.4 -6.2 175 64-238 186-373 (419)
41 PLN03150 hypothetical protein; 98.6 1.7E-07 3.6E-12 91.1 9.4 106 65-170 420-526 (623)
42 KOG1859 Leucine-rich repeat pr 98.5 2E-09 4.4E-14 100.4 -7.2 125 136-263 165-291 (1096)
43 PLN03150 hypothetical protein; 98.5 3.7E-07 8E-12 88.7 7.7 106 88-193 419-526 (623)
44 KOG0531 Protein phosphatase 1, 98.4 4.6E-08 9.9E-13 90.7 0.7 126 41-172 73-199 (414)
45 KOG2982 Uncharacterized conser 98.4 1.8E-07 4E-12 78.7 3.2 225 63-289 45-285 (418)
46 PF13855 LRR_8: Leucine rich r 98.4 3.7E-07 8.1E-12 59.8 4.0 57 41-97 2-59 (61)
47 PF13855 LRR_8: Leucine rich r 98.4 3E-07 6.6E-12 60.2 3.0 59 63-121 1-59 (61)
48 PRK15386 type III secretion pr 98.3 3.6E-06 7.7E-11 75.8 10.2 137 83-238 48-187 (426)
49 KOG0531 Protein phosphatase 1, 98.3 1.3E-07 2.8E-12 87.7 -0.6 190 41-239 96-288 (414)
50 KOG2982 Uncharacterized conser 98.2 2.1E-07 4.5E-12 78.4 -0.9 178 41-219 72-263 (418)
51 PRK15386 type III secretion pr 98.2 1.2E-05 2.5E-10 72.6 9.6 136 59-216 48-188 (426)
52 KOG1859 Leucine-rich repeat pr 98.2 4.6E-08 1E-12 91.6 -5.9 191 86-283 83-290 (1096)
53 COG5238 RNA1 Ran GTPase-activa 98.2 8.6E-07 1.9E-11 73.8 2.0 193 59-261 26-252 (388)
54 PF12799 LRR_4: Leucine Rich r 98.1 4.4E-06 9.6E-11 50.2 3.4 39 228-267 1-39 (44)
55 PF12799 LRR_4: Leucine Rich r 98.0 5.9E-06 1.3E-10 49.7 2.9 40 205-244 1-40 (44)
56 KOG3665 ZYG-1-like serine/thre 97.9 2.7E-06 5.8E-11 82.8 0.8 158 86-261 121-285 (699)
57 KOG1947 Leucine rich repeat pr 97.8 4.5E-06 9.8E-11 79.2 0.7 108 41-148 189-308 (482)
58 KOG3665 ZYG-1-like serine/thre 97.8 2.1E-05 4.5E-10 76.7 5.1 150 63-214 122-284 (699)
59 KOG1947 Leucine rich repeat pr 97.7 2E-06 4.4E-11 81.6 -4.1 205 133-338 186-421 (482)
60 COG5238 RNA1 Ran GTPase-activa 97.6 1.7E-05 3.7E-10 66.3 0.5 177 40-218 30-255 (388)
61 KOG4579 Leucine-rich repeat (L 97.5 2.1E-06 4.6E-11 64.1 -5.5 89 156-244 50-139 (177)
62 KOG4579 Leucine-rich repeat (L 97.4 9.2E-06 2E-10 60.8 -3.2 87 135-222 53-140 (177)
63 KOG1644 U2-associated snRNP A' 97.3 0.00043 9.2E-09 55.6 5.3 99 160-259 43-148 (233)
64 KOG1644 U2-associated snRNP A' 97.3 0.00036 7.8E-09 56.0 4.6 78 183-261 43-123 (233)
65 KOG2739 Leucine-rich acidic nu 97.1 0.00037 8E-09 58.2 2.9 59 204-262 64-127 (260)
66 KOG2123 Uncharacterized conser 96.9 8E-05 1.7E-09 62.6 -2.8 97 41-141 20-123 (388)
67 KOG2739 Leucine-rich acidic nu 96.8 0.001 2.2E-08 55.7 2.9 80 41-121 44-126 (260)
68 KOG2123 Uncharacterized conser 96.4 0.00013 2.8E-09 61.4 -4.5 98 134-234 18-123 (388)
69 PF13306 LRR_5: Leucine rich r 96.3 0.017 3.8E-07 43.8 7.0 36 201-237 54-90 (129)
70 PF13306 LRR_5: Leucine rich r 96.3 0.0088 1.9E-07 45.4 5.2 82 59-143 8-89 (129)
71 PF00560 LRR_1: Leucine Rich R 95.8 0.0043 9.2E-08 30.9 0.9 19 229-247 1-19 (22)
72 PF13504 LRR_7: Leucine rich r 95.0 0.017 3.7E-07 26.6 1.5 14 229-242 2-15 (17)
73 KOG3864 Uncharacterized conser 94.7 0.011 2.4E-07 47.7 0.6 32 207-238 103-135 (221)
74 PF00560 LRR_1: Leucine Rich R 94.6 0.024 5.2E-07 28.1 1.4 14 43-56 3-16 (22)
75 KOG3864 Uncharacterized conser 93.1 0.026 5.6E-07 45.6 -0.1 14 84-97 122-135 (221)
76 smart00370 LRR Leucine-rich re 91.6 0.2 4.4E-06 25.8 2.3 20 228-247 2-21 (26)
77 smart00369 LRR_TYP Leucine-ric 91.6 0.2 4.4E-06 25.8 2.3 20 228-247 2-21 (26)
78 smart00367 LRR_CC Leucine-rich 89.3 0.27 5.8E-06 25.4 1.5 17 250-266 1-17 (26)
79 KOG4308 LRR-containing protein 88.8 0.0031 6.7E-08 59.1 -10.5 177 65-241 89-303 (478)
80 KOG4308 LRR-containing protein 88.4 0.0034 7.4E-08 58.8 -10.6 174 89-262 89-301 (478)
81 smart00364 LRR_BAC Leucine-ric 80.0 1.4 2.9E-05 22.8 1.4 18 228-245 2-19 (26)
82 KOG0473 Leucine-rich repeat pr 79.2 0.033 7.2E-07 46.1 -7.2 86 178-263 38-123 (326)
83 PF13516 LRR_6: Leucine Rich r 75.1 1.1 2.4E-05 22.5 0.3 8 65-72 4-11 (24)
84 smart00365 LRR_SD22 Leucine-ri 73.6 3.3 7.2E-05 21.4 1.8 16 228-243 2-17 (26)
85 KOG0473 Leucine-rich repeat pr 72.2 0.2 4.3E-06 41.7 -4.5 85 134-219 41-125 (326)
86 smart00368 LRR_RI Leucine rich 61.0 8 0.00017 20.3 1.8 14 228-241 2-15 (28)
87 KOG3763 mRNA export factor TAP 59.1 3.6 7.7E-05 38.9 0.4 65 61-125 216-284 (585)
88 KOG3763 mRNA export factor TAP 54.9 5.3 0.00012 37.8 0.8 34 182-215 218-254 (585)
89 KOG4242 Predicted myosin-I-bin 31.7 2.8E+02 0.006 26.4 7.7 35 207-241 415-453 (553)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.95 E-value=4.2e-27 Score=240.32 Aligned_cols=216 Identities=23% Similarity=0.277 Sum_probs=138.7
Q ss_pred CCCCCCCccCCCCc-CCCCccEEecCCCCCccccCCccC---CeeEEEcCCcccc-ccCcccCCCCCCCEEeCcCccccc
Q 017559 3 MAGCESLRCFPQNI-HFISSIKIDCYKCVNLREFPRISG---NVVELNLMCTPIE-EVPLSIECLPNLETLEMSFCNSLK 77 (369)
Q Consensus 3 l~~c~~l~~~p~~~-~~~~L~~L~l~~~~~~~~~~~~~~---~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~ 77 (369)
+.++.--..+|..+ .+++|++|++++|.....+|..+. +|++|++++|.+. .+|..+..+++|++|++++|....
T Consensus 147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 226 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG 226 (968)
T ss_pred CcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC
Confidence 44443333456555 677788888887775456665443 7777777776665 556667777777777777776666
Q ss_pred ccchhhccCCcCcEEecCCCcCcccCchhhhccCccceecccccccccccchhhhcccCCCeEeecCCCCCCCCCcccCC
Q 017559 78 RLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGN 157 (369)
Q Consensus 78 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 157 (369)
.+|..++++++|++|++++|.....+|..++.+++|++|++++|...+.+|..+.++++|+.|++++|.....+|..+..
T Consensus 227 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~ 306 (968)
T PLN00113 227 EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ 306 (968)
T ss_pred cCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcC
Confidence 66766777777777777776665666667777777777777766655566666666677777777666555556666666
Q ss_pred CcchhhhccCcccCC-CCCccccCCCCCcEEEeccCCC-cCCCcccCCCCCCcEEeccCCCCc
Q 017559 158 LKSLERLHAGLLAIP-QAPSSIVDLNKLETLSLFECRG-LVLPPLLSGLSSLKKLELGDCEIM 218 (369)
Q Consensus 158 l~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~ 218 (369)
+++|+.|++.+|.+. ..|..+..+++|+.|++++|.. ..+|..+..+++|+.|++++|.+.
T Consensus 307 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~ 369 (968)
T PLN00113 307 LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLT 369 (968)
T ss_pred CCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeE
Confidence 666666666666655 3344555566666666666653 244545555555555555555544
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.94 E-value=1.8e-26 Score=235.61 Aligned_cols=282 Identities=22% Similarity=0.260 Sum_probs=183.8
Q ss_pred CCCCCCCCccCCCCc-CCCCccEEecCCCCCccccCCccC---CeeEEEcCCcccc-ccCcccCCCCCCCEEeCcCcccc
Q 017559 2 IMAGCESLRCFPQNI-HFISSIKIDCYKCVNLREFPRISG---NVVELNLMCTPIE-EVPLSIECLPNLETLEMSFCNSL 76 (369)
Q Consensus 2 ~l~~c~~l~~~p~~~-~~~~L~~L~l~~~~~~~~~~~~~~---~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~ 76 (369)
++.++.-...+|..+ .+++|++|++++|.....+|..+. +|++|+++++.+. .+|..+..+++|++|++++|...
T Consensus 170 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 249 (968)
T PLN00113 170 DLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT 249 (968)
T ss_pred ECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceec
Confidence 455554444566665 788889999988885556665544 8888888887776 67777888888888888888777
Q ss_pred cccchhhccCCcCcEEecCCCcCcccCchhhhccCccceecccccccccccchhhhcccCCCeEeecCCCCCCCCCcccC
Q 017559 77 KRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLG 156 (369)
Q Consensus 77 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 156 (369)
..+|..++++++|++|++++|.....+|..+..+++|++|++++|.....+|..+.++++|+.|++++|...+..|..+.
T Consensus 250 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 329 (968)
T PLN00113 250 GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT 329 (968)
T ss_pred cccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHh
Confidence 77777788888888888888776667777777888888888887766666777777777888888877766666666677
Q ss_pred CCcchhhhccCcccCC-CCCccccCCCCCcEEEeccCCC-cCCCccc------------------------CCCCCCcEE
Q 017559 157 NLKSLERLHAGLLAIP-QAPSSIVDLNKLETLSLFECRG-LVLPPLL------------------------SGLSSLKKL 210 (369)
Q Consensus 157 ~l~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~------------------------~~~~~L~~L 210 (369)
.+++|+.|++.+|.+. .+|..+..+++|+.|++++|.. ..+|..+ ..+++|+.|
T Consensus 330 ~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L 409 (968)
T PLN00113 330 SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRV 409 (968)
T ss_pred cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEE
Confidence 7777777777777765 4555666666777777766652 2333333 444455555
Q ss_pred eccCCCCcc-CCCCCCCCCCCCEEEcCCCCCC-ccchhhccCCCCCEeccccccccccCCCc--CcccceecccCCc
Q 017559 211 ELGDCEIME-IPPDIGCLSSLESLNLSGNNIE-SLPTSISQLSRLRWLYLVNCVKLQSLPEL--PLLLVMLGASDCK 283 (369)
Q Consensus 211 ~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~L~~L~l~~c~ 283 (369)
++++|.+.+ .|..+..++.|+.|++++|.++ .++..+..+++|+.|++++|.....+|.. ..+|+.|++++|.
T Consensus 410 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~ 486 (968)
T PLN00113 410 RLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQ 486 (968)
T ss_pred ECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCc
Confidence 555555443 3444445555555555555554 33334445555555555555433333321 1345555555543
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=1e-24 Score=223.69 Aligned_cols=314 Identities=27% Similarity=0.425 Sum_probs=217.1
Q ss_pred CCCCc-CC-CCccEEecCCCCCccccCCccC--CeeEEEcCCccccccCcccCCCCCCCEEeCcCcccccccchhhccCC
Q 017559 12 FPQNI-HF-ISSIKIDCYKCVNLREFPRISG--NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLK 87 (369)
Q Consensus 12 ~p~~~-~~-~~L~~L~l~~~~~~~~~~~~~~--~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 87 (369)
+|..+ .+ ..|+.|++.++. ++.+|..+. +|+.|++.++.+..+|..+..+++|+.|+++++.....+|. +..++
T Consensus 580 lp~~~~~lp~~Lr~L~~~~~~-l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~ 657 (1153)
T PLN03210 580 LPEGFDYLPPKLRLLRWDKYP-LRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMAT 657 (1153)
T ss_pred cCcchhhcCcccEEEEecCCC-CCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCC
Confidence 45544 33 359999999887 888887665 99999999999999988888999999999999887777775 77899
Q ss_pred cCcEEecCCCcCcccCchhhhccCccceecccccccccccchhhhcccCCCeEeecCCCCCCCCCcccCCCcchhhhccC
Q 017559 88 SLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAG 167 (369)
Q Consensus 88 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 167 (369)
+|+.|++++|.....+|..+.++++|++|++++|..++.+|..+ ++++|+.|++++|..+..+|.. ..+|+.|++.
T Consensus 658 ~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~ 733 (1153)
T PLN03210 658 NLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLD 733 (1153)
T ss_pred cccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecC
Confidence 99999999998888899999999999999999998888888755 7899999999999877776643 4567888888
Q ss_pred cccCCCCCccccCCCC-------------------------------CcEEEeccCC-CcCCCcccCCCCCCcEEeccCC
Q 017559 168 LLAIPQAPSSIVDLNK-------------------------------LETLSLFECR-GLVLPPLLSGLSSLKKLELGDC 215 (369)
Q Consensus 168 ~~~~~~~~~~~~~~~~-------------------------------L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~ 215 (369)
++.+..+|..+ .+++ |+.|++++|. ...+|..++++++|+.|++++|
T Consensus 734 ~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C 812 (1153)
T PLN03210 734 ETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENC 812 (1153)
T ss_pred CCccccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCC
Confidence 88877766543 2344 4444554443 3344545555555555555555
Q ss_pred CCcc-CCCCCCCCCCCCEEEcCCC-CCCccchhhccCCCCCEeccccccccccCCC---cCcccceecccCCcccccCCC
Q 017559 216 EIME-IPPDIGCLSSLESLNLSGN-NIESLPTSISQLSRLRWLYLVNCVKLQSLPE---LPLLLVMLGASDCKRLQFLPE 290 (369)
Q Consensus 216 ~~~~-~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~L~~L~l~~c~~L~~l~~ 290 (369)
...+ +|... .+++|++|++++| .+..+|.. ..+|+.|+++++ .++.+|. .+++|+.|++.+|++|+.++.
T Consensus 813 ~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n-~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~ 887 (1153)
T PLN03210 813 INLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRT-GIEEVPWWIEKFSNLSFLDMNGCNNLQRVSL 887 (1153)
T ss_pred CCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCC-CCccChHHHhcCCCCCEEECCCCCCcCccCc
Confidence 3222 43332 4455555555554 22233321 245555555554 4444443 346788888999999888876
Q ss_pred ch---hhhHHhhHHHHHhhhccccccccC-----------CC-CCcEEEecCccCcChhhHH
Q 017559 291 LT---SCLEELDASILQALSNRTGERLSK-----------HM-SPVQLIFANCLKLNESIWA 337 (369)
Q Consensus 291 ~~---~~l~~l~~~~~~~l~~~~~~~~~~-----------~~-~~~~~~~~~c~~l~~~~~~ 337 (369)
.. ++|+.+++.+|+++++......+. .. +.....+.+|.++...++.
T Consensus 888 ~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~a~l 949 (1153)
T PLN03210 888 NISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQEALL 949 (1153)
T ss_pred ccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCchhhh
Confidence 54 455666788888877554322211 11 1234557899888876653
No 4
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=3.8e-26 Score=205.94 Aligned_cols=274 Identities=28% Similarity=0.373 Sum_probs=223.6
Q ss_pred CCCCc-CCCCccEEecCCCCCccccCCccC---CeeEEEcCCccccccCcc-cCCCCCCCEEeCcCcccccccchhhccC
Q 017559 12 FPQNI-HFISSIKIDCYKCVNLREFPRISG---NVVELNLMCTPIEEVPLS-IECLPNLETLEMSFCNSLKRLSTSICKL 86 (369)
Q Consensus 12 ~p~~~-~~~~L~~L~l~~~~~~~~~~~~~~---~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l 86 (369)
+|+.+ .+..|..|++++|+ ++++|.... ++-.|++++|.|..||.. +.++..|-+|++++| ....+|+.+.++
T Consensus 95 iP~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL 172 (1255)
T KOG0444|consen 95 IPTDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRL 172 (1255)
T ss_pred CCchhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHH
Confidence 66654 89999999999998 999998766 888999999999999874 668888999999985 556778888899
Q ss_pred CcCcEEecCCCcCcccCchhhhccCccceeccccccc-ccccchhhhcccCCCeEeecCCCCCCCCCcccCCCcchhhhc
Q 017559 87 KSLRSLDLSYCINLESFPEILEKMELLEEINLEEASN-IKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLH 165 (369)
Q Consensus 87 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 165 (369)
..|+.|.+++|+.....-..+..++.|+.|.+++.+. +..+|..+..+.+|..++++. +.+..+|+.+.++++|+.|+
T Consensus 173 ~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLN 251 (1255)
T KOG0444|consen 173 SMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECLYKLRNLRRLN 251 (1255)
T ss_pred hhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchHHHhhhhhhheec
Confidence 9999999999865543334445677788888886543 347888888888999999887 55777888888889999999
Q ss_pred cCcccCCCCCccccCCCCCcEEEeccCCCcCCCcccCCCCCCcEEeccCCCCc--cCCCCCCCCCCCCEEEcCCCCCCcc
Q 017559 166 AGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIM--EIPPDIGCLSSLESLNLSGNNIESL 243 (369)
Q Consensus 166 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~l~~~ 243 (369)
+++|.++++........+|++|+++.|+.+.+|+.+..+++|++|.+.+|++. ++|..++.+..|+.+..++|.+.-+
T Consensus 252 LS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElV 331 (1255)
T KOG0444|consen 252 LSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELV 331 (1255)
T ss_pred cCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccC
Confidence 99999888777777788899999999998889988888899999988888765 3888888888899998888888888
Q ss_pred chhhccCCCCCEeccccccccccCCC---cCcccceecccCCcccccCC
Q 017559 244 PTSISQLSRLRWLYLVNCVKLQSLPE---LPLLLVMLGASDCKRLQFLP 289 (369)
Q Consensus 244 ~~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~L~~L~l~~c~~L~~l~ 289 (369)
|.++..|+.|+.|.+++| .+-.+|+ +.+.|+.|+++..++|-.=|
T Consensus 332 PEglcRC~kL~kL~L~~N-rLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 332 PEGLCRCVKLQKLKLDHN-RLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred chhhhhhHHHHHhccccc-ceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 888888999999998877 4555665 45778888888888875433
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=1.4e-22 Score=207.96 Aligned_cols=271 Identities=31% Similarity=0.451 Sum_probs=218.1
Q ss_pred CCccCCCCcCCCCccEEecCCCCCccccCCccC---CeeEEEcCCc-cccccCcccCCCCCCCEEeCcCcccccccchhh
Q 017559 8 SLRCFPQNIHFISSIKIDCYKCVNLREFPRISG---NVVELNLMCT-PIEEVPLSIECLPNLETLEMSFCNSLKRLSTSI 83 (369)
Q Consensus 8 ~l~~~p~~~~~~~L~~L~l~~~~~~~~~~~~~~---~L~~L~l~~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 83 (369)
.++.+|..+.+.+|+.|++.++. +..++.... +|+.|+++++ .+..+|. +..+++|++|++++|.....+|..+
T Consensus 600 ~l~~lP~~f~~~~L~~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si 677 (1153)
T PLN03210 600 PLRCMPSNFRPENLVKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSI 677 (1153)
T ss_pred CCCCCCCcCCccCCcEEECcCcc-ccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhh
Confidence 36778888888999999999987 777776444 9999999654 4667775 7788999999999999888999989
Q ss_pred ccCCcCcEEecCCCcCcccCchhhhccCccceecccccccccccchhhhcccCCCeEeecCCCCCCCCCccc--------
Q 017559 84 CKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESL-------- 155 (369)
Q Consensus 84 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-------- 155 (369)
+.+++|+.|++++|.....+|..+ ++++|++|++++|..+..+|.. .++|+.|++.++. +..+|..+
T Consensus 678 ~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~-i~~lP~~~~l~~L~~L 752 (1153)
T PLN03210 678 QYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETA-IEEFPSNLRLENLDEL 752 (1153)
T ss_pred hccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCc-cccccccccccccccc
Confidence 999999999999998888888765 7899999999998777666543 3567777777654 33333221
Q ss_pred ----------------------CCCcchhhhccCccc-CCCCCccccCCCCCcEEEeccCC-CcCCCcccCCCCCCcEEe
Q 017559 156 ----------------------GNLKSLERLHAGLLA-IPQAPSSIVDLNKLETLSLFECR-GLVLPPLLSGLSSLKKLE 211 (369)
Q Consensus 156 ----------------------~~l~~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~ 211 (369)
...++|+.|++++|. +..+|..+.++++|+.|++++|. ...+|... .+++|+.|+
T Consensus 753 ~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~ 831 (1153)
T PLN03210 753 ILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLD 831 (1153)
T ss_pred cccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEE
Confidence 123467788888775 44688889999999999999986 66777654 688999999
Q ss_pred ccCCCCcc-CCCCCCCCCCCCEEEcCCCCCCccchhhccCCCCCEeccccccccccCCCc---CcccceecccCCccccc
Q 017559 212 LGDCEIME-IPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPEL---PLLLVMLGASDCKRLQF 287 (369)
Q Consensus 212 l~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~---~~~L~~L~l~~c~~L~~ 287 (369)
+++|.... +|. ...+|++|++++|.++.+|.++..+++|+.|++++|..++.++.. ..+|+.+++++|++|..
T Consensus 832 Ls~c~~L~~~p~---~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 832 LSGCSRLRTFPD---ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred CCCCCccccccc---cccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccc
Confidence 99986554 443 246899999999999999999999999999999999999988763 36788889999999986
Q ss_pred CC
Q 017559 288 LP 289 (369)
Q Consensus 288 l~ 289 (369)
+.
T Consensus 909 ~~ 910 (1153)
T PLN03210 909 AS 910 (1153)
T ss_pred cc
Confidence 54
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=1.2e-25 Score=201.11 Aligned_cols=308 Identities=23% Similarity=0.179 Sum_probs=171.6
Q ss_pred CccCCCCc-CCCCccEEecCCCCCccccCC----ccCCeeEEEcCCccccccCc-ccCCCCCCCEEeCcCcccccccchh
Q 017559 9 LRCFPQNI-HFISSIKIDCYKCVNLREFPR----ISGNVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTS 82 (369)
Q Consensus 9 l~~~p~~~-~~~~L~~L~l~~~~~~~~~~~----~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~ 82 (369)
++.+|... ...+++.|++.+|. +.++.. ....|+.|+++.|.+.+++. .+..-.++++|++++|.+.+.-...
T Consensus 114 Lt~IP~f~~~sghl~~L~L~~N~-I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~ 192 (873)
T KOG4194|consen 114 LTRIPRFGHESGHLEKLDLRHNL-ISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGH 192 (873)
T ss_pred hhhcccccccccceeEEeeeccc-cccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccccccc
Confidence 44556555 33446666666655 444331 11145555555555554443 2333344555555554444333334
Q ss_pred hccCCcCcEEecCCCcCcccCchhhhccCccceecccc------------------------cccccccchhhhcccCCC
Q 017559 83 ICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEE------------------------ASNIKELPSSIENLEGLK 138 (369)
Q Consensus 83 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~------------------------~~~~~~~~~~~~~~~~L~ 138 (369)
|..+.+|..|.+++|...+.-+..|.++++|+.|++.. |....--...|-.+.+++
T Consensus 193 F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme 272 (873)
T KOG4194|consen 193 FDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKME 272 (873)
T ss_pred ccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccc
Confidence 44444555555555333322234444455555555543 333222233344566666
Q ss_pred eEeecCCCCCCCCCcccCCCcchhhhccCcccCCCC-CccccCCCCCcEEEeccCCCcCCCc-ccCCCCCCcEEeccCCC
Q 017559 139 QLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQA-PSSIVDLNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCE 216 (369)
Q Consensus 139 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~ 216 (369)
+|++..|+....-..++..++.|+.|++++|.|..+ ++....+++|++|+++.|....+++ .+..+..|++|.++.|.
T Consensus 273 ~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns 352 (873)
T KOG4194|consen 273 HLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS 352 (873)
T ss_pred eeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc
Confidence 666666544444444566777777777777777644 3556667778888888777666654 55566777777777777
Q ss_pred CccCCC-CCCCCCCCCEEEcCCCCCC----ccchhhccCCCCCEeccccccccccCCC----cCcccceecccCCccccc
Q 017559 217 IMEIPP-DIGCLSSLESLNLSGNNIE----SLPTSISQLSRLRWLYLVNCVKLQSLPE----LPLLLVMLGASDCKRLQF 287 (369)
Q Consensus 217 ~~~~~~-~~~~~~~L~~L~l~~~~l~----~~~~~~~~~~~L~~L~l~~~~~l~~~~~----~~~~L~~L~l~~c~~L~~ 287 (369)
+..+.+ .+..+.+|++|||++|.++ +-...+.+++.|+.|.+.+| ++++++. .+++||.|++.+.+-...
T Consensus 353 i~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~NaiaSI 431 (873)
T KOG4194|consen 353 IDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNAIASI 431 (873)
T ss_pred hHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCCCcceee
Confidence 776433 3566778888888888665 22344567888888888877 7777764 346788888876642222
Q ss_pred CCCc--hhhhHHhhHHHHHhhhccccccccCCC
Q 017559 288 LPEL--TSCLEELDASILQALSNRTGERLSKHM 318 (369)
Q Consensus 288 l~~~--~~~l~~l~~~~~~~l~~~~~~~~~~~~ 318 (369)
-+.+ +-.|++|....-.-++|+...++.+|.
T Consensus 432 q~nAFe~m~Lk~Lv~nSssflCDCql~Wl~qWl 464 (873)
T KOG4194|consen 432 QPNAFEPMELKELVMNSSSFLCDCQLKWLAQWL 464 (873)
T ss_pred cccccccchhhhhhhcccceEEeccHHHHHHHH
Confidence 1211 114555554444444444444444443
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=6.3e-25 Score=196.45 Aligned_cols=244 Identities=23% Similarity=0.206 Sum_probs=187.9
Q ss_pred CCCCccEEecCCCCCccccCCccC---CeeEEEcCCccccccCc-ccCCCCCCCEEeCcCcccccccchhhccCCcCcEE
Q 017559 17 HFISSIKIDCYKCVNLREFPRISG---NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSL 92 (369)
Q Consensus 17 ~~~~L~~L~l~~~~~~~~~~~~~~---~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 92 (369)
++++|+.+++..|. +..+|.+.. +++.|++.+|.|..+.. .++.++.|+.||++.|.....-..+|..-.++++|
T Consensus 100 nl~nLq~v~l~~N~-Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L 178 (873)
T KOG4194|consen 100 NLPNLQEVNLNKNE-LTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKL 178 (873)
T ss_pred cCCcceeeeeccch-hhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEE
Confidence 78899999998888 888987765 89999999999987654 57788999999999965544333467767899999
Q ss_pred ecCCCcCcccCchhhhccCccceecccccccccccchhhhcccCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCC
Q 017559 93 DLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIP 172 (369)
Q Consensus 93 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 172 (369)
++++|.+.+.-...|..+.+|..|.++.|+..+.-+..|++++.|+.|++.+|..-..-.-.|..+++|+.+.+..|.+.
T Consensus 179 ~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~ 258 (873)
T KOG4194|consen 179 NLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS 258 (873)
T ss_pred eeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc
Confidence 99998766666677888999999999976654444467888999999999986543332456889999999999999988
Q ss_pred CCCc-cccCCCCCcEEEeccCCCcCCC-cccCCCCCCcEEeccCCCCcc-CCCCCCCCCCCCEEEcCCCCCCccc-hhhc
Q 017559 173 QAPS-SIVDLNKLETLSLFECRGLVLP-PLLSGLSSLKKLELGDCEIME-IPPDIGCLSSLESLNLSGNNIESLP-TSIS 248 (369)
Q Consensus 173 ~~~~-~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~ 248 (369)
.+.+ .|..+.++++|+++.|....+- .++-++.+|+.|+++.|.|.. -++.+..+++|+.|+|++|+++.++ ..+.
T Consensus 259 kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~ 338 (873)
T KOG4194|consen 259 KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFR 338 (873)
T ss_pred cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHH
Confidence 7654 4567889999999988865554 366778888888888888888 3455778888888888888888666 3344
Q ss_pred cCCCCCEeccccc
Q 017559 249 QLSRLRWLYLVNC 261 (369)
Q Consensus 249 ~~~~L~~L~l~~~ 261 (369)
.+..|++|++++|
T Consensus 339 ~L~~Le~LnLs~N 351 (873)
T KOG4194|consen 339 VLSQLEELNLSHN 351 (873)
T ss_pred HHHHhhhhccccc
Confidence 4455555555555
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=1.1e-24 Score=196.72 Aligned_cols=258 Identities=22% Similarity=0.297 Sum_probs=227.4
Q ss_pred CCCccCCCCc-CCCCccEEecCCCCCccccCCccC----CeeEEEcCCccccccCcccCCCCCCCEEeCcCcccccccch
Q 017559 7 ESLRCFPQNI-HFISSIKIDCYKCVNLREFPRISG----NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLST 81 (369)
Q Consensus 7 ~~l~~~p~~~-~~~~L~~L~l~~~~~~~~~~~~~~----~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~ 81 (369)
..++++|... .-+++-+|++++|. +..+|.... .|-.|++++|++..+|..+..+.+|++|++++|+.....-.
T Consensus 113 NqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLr 191 (1255)
T KOG0444|consen 113 NQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLR 191 (1255)
T ss_pred hhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHh
Confidence 3577888887 88899999999998 999997655 77789999999999999999999999999999886554444
Q ss_pred hhccCCcCcEEecCCCcCc-ccCchhhhccCccceecccccccccccchhhhcccCCCeEeecCCCCCCCCCcccCCCcc
Q 017559 82 SICKLKSLRSLDLSYCINL-ESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKS 160 (369)
Q Consensus 82 ~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 160 (369)
.+..+.+|++|.+++.+.. ..+|..+..+.+|+.+|++ ++.+..+|..+.++++|+.|++++|. ++.+....+...+
T Consensus 192 QLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS-~N~Lp~vPecly~l~~LrrLNLS~N~-iteL~~~~~~W~~ 269 (1255)
T KOG0444|consen 192 QLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS-ENNLPIVPECLYKLRNLRRLNLSGNK-ITELNMTEGEWEN 269 (1255)
T ss_pred cCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccc-ccCCCcchHHHhhhhhhheeccCcCc-eeeeeccHHHHhh
Confidence 4566889999999986554 4588999999999999999 66788899999999999999999954 5555556778899
Q ss_pred hhhhccCcccCCCCCccccCCCCCcEEEeccCC--CcCCCcccCCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEcCCC
Q 017559 161 LERLHAGLLAIPQAPSSIVDLNKLETLSLFECR--GLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGN 238 (369)
Q Consensus 161 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 238 (369)
|++|+++.|.++.+|+.+.++++|+.|.+.+|. ...+|..++.+..|+.+..++|.+.-+|..+..|..|+.|.+++|
T Consensus 270 lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~N 349 (1255)
T KOG0444|consen 270 LETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHN 349 (1255)
T ss_pred hhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhccccc
Confidence 999999999999999999999999999999998 567899999999999999999999889999999999999999999
Q ss_pred CCCccchhhccCCCCCEeccccccccccC
Q 017559 239 NIESLPTSISQLSRLRWLYLVNCVKLQSL 267 (369)
Q Consensus 239 ~l~~~~~~~~~~~~L~~L~l~~~~~l~~~ 267 (369)
++..+|+.+--++.|+.||++.|+.+.-=
T Consensus 350 rLiTLPeaIHlL~~l~vLDlreNpnLVMP 378 (1255)
T KOG0444|consen 350 RLITLPEAIHLLPDLKVLDLRENPNLVMP 378 (1255)
T ss_pred ceeechhhhhhcCCcceeeccCCcCccCC
Confidence 99999999999999999999999887643
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.82 E-value=8.7e-23 Score=175.26 Aligned_cols=240 Identities=32% Similarity=0.421 Sum_probs=210.8
Q ss_pred cCCCCccEEecCCCCCccccCCccC---CeeEEEcCCccccccCcccCCCCCCCEEeCcCcccccccchhhccCCcCcEE
Q 017559 16 IHFISSIKIDCYKCVNLREFPRISG---NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSL 92 (369)
Q Consensus 16 ~~~~~L~~L~l~~~~~~~~~~~~~~---~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 92 (369)
..+..+.++++..|. +...|...+ .++.++++++++..+|+.++...+|+.++++++. ...+++.++.+..|..+
T Consensus 65 ~nL~~l~vl~~~~n~-l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~-~~el~~~i~~~~~l~dl 142 (565)
T KOG0472|consen 65 KNLACLTVLNVHDNK-LSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNE-LKELPDSIGRLLDLEDL 142 (565)
T ss_pred hcccceeEEEeccch-hhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccc-eeecCchHHHHhhhhhh
Confidence 378889999999998 788887777 7888999999999999999999999999999854 45667778889999999
Q ss_pred ecCCCcCcccCchhhhccCccceecccccccccccchhhhcccCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCC
Q 017559 93 DLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIP 172 (369)
Q Consensus 93 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 172 (369)
+..+| ...+.|..+.++.+|..+++.+|. ....|+..-+++.|++++... +.++.+|..++.+.+|+.|++.+|.+.
T Consensus 143 ~~~~N-~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~Nki~ 219 (565)
T KOG0472|consen 143 DATNN-QISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNS-NLLETLPPELGGLESLELLYLRRNKIR 219 (565)
T ss_pred hcccc-ccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccch-hhhhcCChhhcchhhhHHHHhhhcccc
Confidence 98885 456788889999999999999765 445555555699999999887 568899999999999999999999999
Q ss_pred CCCccccCCCCCcEEEeccCCCcCCCcc-cCCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEcCCCCCCccchhhccCC
Q 017559 173 QAPSSIVDLNKLETLSLFECRGLVLPPL-LSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLS 251 (369)
Q Consensus 173 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~ 251 (369)
.+| .|..|+.|+++.++.|....+|.. ...++++..|++.+|++.++|+.+.-+.+|++||+++|.++.+|..++.+
T Consensus 220 ~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl- 297 (565)
T KOG0472|consen 220 FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL- 297 (565)
T ss_pred cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-
Confidence 998 788999999999999998888864 45889999999999999999999999999999999999999999999999
Q ss_pred CCCEecccccc
Q 017559 252 RLRWLYLVNCV 262 (369)
Q Consensus 252 ~L~~L~l~~~~ 262 (369)
.|+.|-+.+|+
T Consensus 298 hL~~L~leGNP 308 (565)
T KOG0472|consen 298 HLKFLALEGNP 308 (565)
T ss_pred eeeehhhcCCc
Confidence 99999999996
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.76 E-value=2.9e-21 Score=165.99 Aligned_cols=258 Identities=28% Similarity=0.359 Sum_probs=193.7
Q ss_pred CCccEEecCCCCCccccCCc---cCCeeEEEcCCccccccCcccCCCCCCCEEeCcCcccccccchhhccCCcCcEEecC
Q 017559 19 ISSIKIDCYKCVNLREFPRI---SGNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLS 95 (369)
Q Consensus 19 ~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 95 (369)
..++.+.+++|. +..+.+- ...+.+|.+..+....+|.+++.+..++.++.+++ ....+|..+..+..|..++++
T Consensus 45 v~l~~lils~N~-l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n-~ls~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 45 VDLQKLILSHND-LEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHN-KLSELPEQIGSLISLVKLDCS 122 (565)
T ss_pred cchhhhhhccCc-hhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccc-hHhhccHHHhhhhhhhhhhcc
Confidence 346667777776 4443322 22677777777777777777777777777777774 345667667777788888877
Q ss_pred CCcCcccCchhhhccCccceecccccccccccchhhhcccCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCC
Q 017559 96 YCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAP 175 (369)
Q Consensus 96 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 175 (369)
++ ....+++.++.+..|..++.. ++.+...|+.+.++.++..+++.++. ....|...-.++.|+++++..|-+..+|
T Consensus 123 ~n-~~~el~~~i~~~~~l~dl~~~-~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N~L~tlP 199 (565)
T KOG0472|consen 123 SN-ELKELPDSIGRLLDLEDLDAT-NNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSNLLETLP 199 (565)
T ss_pred cc-ceeecCchHHHHhhhhhhhcc-ccccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccchhhhhcCC
Confidence 74 455567777777778888777 44456677777777888888888744 4555555555888888888888888888
Q ss_pred ccccCCCCCcEEEeccCCCcCCCcccCCCCCCcEEeccCCCCccCCCCC-CCCCCCCEEEcCCCCCCccchhhccCCCCC
Q 017559 176 SSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDI-GCLSSLESLNLSGNNIESLPTSISQLSRLR 254 (369)
Q Consensus 176 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~ 254 (369)
+.++.+.+|..|++..|....+| .|.+|..|++|+++.|.+..+|... ..++++..||+.+|+++.+|+.+.-+++|.
T Consensus 200 ~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~ 278 (565)
T KOG0472|consen 200 PELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLE 278 (565)
T ss_pred hhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhh
Confidence 88888889998999988888888 4788888999999999888877664 478999999999999999999999999999
Q ss_pred EeccccccccccCCCcCc--ccceecccCCc
Q 017559 255 WLYLVNCVKLQSLPELPL--LLVMLGASDCK 283 (369)
Q Consensus 255 ~L~l~~~~~l~~~~~~~~--~L~~L~l~~c~ 283 (369)
.||+++| .+.++|.... .|+.|.+.|.|
T Consensus 279 rLDlSNN-~is~Lp~sLgnlhL~~L~leGNP 308 (565)
T KOG0472|consen 279 RLDLSNN-DISSLPYSLGNLHLKFLALEGNP 308 (565)
T ss_pred hhcccCC-ccccCCcccccceeeehhhcCCc
Confidence 9999987 6777775443 35666676665
No 11
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.75 E-value=1.4e-17 Score=161.26 Aligned_cols=241 Identities=20% Similarity=0.277 Sum_probs=172.2
Q ss_pred CCccEEecCCCCCccccCCccC-CeeEEEcCCccccccCcccCCCCCCCEEeCcCcccccccchhhccCCcCcEEecCCC
Q 017559 19 ISSIKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYC 97 (369)
Q Consensus 19 ~~L~~L~l~~~~~~~~~~~~~~-~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 97 (369)
.+...|+++++. +..+|..++ .++.|++++|.++.+|..+. ++|++|++++|.. ..+|..+. .+|+.|++++|
T Consensus 178 ~~~~~L~L~~~~-LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~L-tsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 178 NNKTELRLKILG-LTTIPACIPEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQL-TSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred cCceEEEeCCCC-cCcCCcccccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCcc-ccCChhhh--ccccEEECcCC
Confidence 346778888876 778887554 88889998888888886543 5888999988654 45665443 57888999887
Q ss_pred cCcccCchhhhccCccceecccccccccccchhhhcccCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCcc
Q 017559 98 INLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSS 177 (369)
Q Consensus 98 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 177 (369)
... .+|..+. .+|++|++++| .+..+|..+. ++|+.|++++|. +..+|..+. ++|+.|++++|.+..+|..
T Consensus 252 ~L~-~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~ 322 (754)
T PRK15370 252 RIT-ELPERLP--SALQSLDLFHN-KISCLPENLP--EELRYLSVYDNS-IRTLPAHLP--SGITHLNVQSNSLTALPET 322 (754)
T ss_pred ccC-cCChhHh--CCCCEEECcCC-ccCccccccC--CCCcEEECCCCc-cccCcccch--hhHHHHHhcCCccccCCcc
Confidence 544 5665543 57888888855 4455665442 578899988864 455554332 4788888988888877765
Q ss_pred ccCCCCCcEEEeccCCCcCCCcccCCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEcCCCCCCccchhhccCCCCCEec
Q 017559 178 IVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLY 257 (369)
Q Consensus 178 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~ 257 (369)
+ .++|+.|++++|....+|..+. ++|+.|++++|.+..+|..+ .++|++|++++|.++.+|..+. ..|+.|+
T Consensus 323 l--~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~--~sL~~Ld 394 (754)
T PRK15370 323 L--PPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETL--PPTITTLDVSRNALTNLPENLP--AALQIMQ 394 (754)
T ss_pred c--cccceeccccCCccccCChhhc--CcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCCCCCHhHH--HHHHHHh
Confidence 4 3688888998888777776543 68899999999888776544 3688999999998888886654 3688888
Q ss_pred cccccccccCCCcC-------cccceecccCCc
Q 017559 258 LVNCVKLQSLPELP-------LLLVMLGASDCK 283 (369)
Q Consensus 258 l~~~~~l~~~~~~~-------~~L~~L~l~~c~ 283 (369)
+++| .+..+|... +.+..+++.+++
T Consensus 395 Ls~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 395 ASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred hccC-CcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 8887 566666422 345566666544
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.75 E-value=1.8e-17 Score=159.73 Aligned_cols=227 Identities=22% Similarity=0.205 Sum_probs=124.2
Q ss_pred CCccCCCCcCCCCccEEecCCCCCccccCCccCCeeEEEcCCccccccCcccCCCCCCCEEeCcCcccccccchhhccCC
Q 017559 8 SLRCFPQNIHFISSIKIDCYKCVNLREFPRISGNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLK 87 (369)
Q Consensus 8 ~l~~~p~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 87 (369)
+++++|..+ .++|+.|++.+|. ++.+|....+|++|++++|.++.+|.. .++|+.|++++|.. ..+|.. ..
T Consensus 212 ~LtsLP~~l-~~~L~~L~L~~N~-Lt~LP~lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L-~~Lp~l---p~ 282 (788)
T PRK15387 212 GLTTLPDCL-PAHITTLVIPDNN-LTSLPALPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPL-THLPAL---PS 282 (788)
T ss_pred CCCcCCcch-hcCCCEEEccCCc-CCCCCCCCCCCcEEEecCCccCcccCc---ccccceeeccCCch-hhhhhc---hh
Confidence 677888866 3578899999887 888888777999999988888887753 35778888887643 344432 24
Q ss_pred cCcEEecCCCcCcccCchhhhccCccceecccccccccccchhhhcccCCCeEeecCCCCCCCCCcccCCCcchhhhccC
Q 017559 88 SLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAG 167 (369)
Q Consensus 88 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 167 (369)
+|+.|++++|. ...+|. ..++|++|++++|. +..+|.. ..+|+.|.+.+|. ++.+|. -..+|+.|+++
T Consensus 283 ~L~~L~Ls~N~-Lt~LP~---~p~~L~~LdLS~N~-L~~Lp~l---p~~L~~L~Ls~N~-L~~LP~---lp~~Lq~LdLS 350 (788)
T PRK15387 283 GLCKLWIFGNQ-LTSLPV---LPPGLQELSVSDNQ-LASLPAL---PSELCKLWAYNNQ-LTSLPT---LPSGLQELSVS 350 (788)
T ss_pred hcCEEECcCCc-cccccc---cccccceeECCCCc-cccCCCC---cccccccccccCc-cccccc---cccccceEecC
Confidence 56667776653 334443 23566777776553 3333321 1234444444432 222332 11244455555
Q ss_pred cccCCCCCcccc-----------------CCCCCcEEEeccCCCcCCCcccCCCCCCcEEeccCCCCccCCCCCCCCCCC
Q 017559 168 LLAIPQAPSSIV-----------------DLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSL 230 (369)
Q Consensus 168 ~~~~~~~~~~~~-----------------~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L 230 (369)
+|.++.+|.... ...+|+.|++++|....+|.. .++|+.|++++|.+..+|.. +.+|
T Consensus 351 ~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~LssIP~l---~~~L 424 (788)
T PRK15387 351 DNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTSLPML---PSGL 424 (788)
T ss_pred CCccCCCCCCCcccceehhhccccccCcccccccceEEecCCcccCCCCc---ccCCCEEEccCCcCCCCCcc---hhhh
Confidence 555444433210 013455555555554444432 13455555555555544432 2344
Q ss_pred CEEEcCCCCCCccchhhccCCCCCEeccccc
Q 017559 231 ESLNLSGNNIESLPTSISQLSRLRWLYLVNC 261 (369)
Q Consensus 231 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~ 261 (369)
+.|++++|.++.+|..+..+++|+.|++++|
T Consensus 425 ~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N 455 (788)
T PRK15387 425 LSLSVYRNQLTRLPESLIHLSSETTVNLEGN 455 (788)
T ss_pred hhhhhccCcccccChHHhhccCCCeEECCCC
Confidence 5555555555555555555555555555555
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.75 E-value=8.9e-20 Score=171.68 Aligned_cols=264 Identities=26% Similarity=0.328 Sum_probs=196.6
Q ss_pred CCCCccEEecCCCCCccccCCccC-CeeEEEcCCccccccCcccCCCCCCCEEeCcCcccccccchhhccCCcCcEEecC
Q 017559 17 HFISSIKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLS 95 (369)
Q Consensus 17 ~~~~L~~L~l~~~~~~~~~~~~~~-~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 95 (369)
.-++++.|+...|......+...+ +|++++++.+.+..+|.++..+.+|+.++..+|.. ..+|..+....+|+.|.+.
T Consensus 217 ~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~ 295 (1081)
T KOG0618|consen 217 SGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAA 295 (1081)
T ss_pred cCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhh
Confidence 455677777777774433334443 88888888888888888888888888888888654 6677767778888888888
Q ss_pred CCcCcccCchhhhccCccceecccccccccccchhh-hccc-CCCeEeecCCCCCCCCCcc-cCCCcchhhhccCcccCC
Q 017559 96 YCINLESFPEILEKMELLEEINLEEASNIKELPSSI-ENLE-GLKQLKLTGCTKLGSLPES-LGNLKSLERLHAGLLAIP 172 (369)
Q Consensus 96 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~-~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~ 172 (369)
+| ....+|.....++.|++|++..|. +..+|..+ .... .++.++.+. ..+...|.. -.....|+.|++.+|.++
T Consensus 296 ~n-el~yip~~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~-n~l~~lp~~~e~~~~~Lq~LylanN~Lt 372 (1081)
T KOG0618|consen 296 YN-ELEYIPPFLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSS-NKLSTLPSYEENNHAALQELYLANNHLT 372 (1081)
T ss_pred hh-hhhhCCCcccccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhh-ccccccccccchhhHHHHHHHHhcCccc
Confidence 75 456677777778888888888544 44444432 2222 245555544 333444321 234567999999999988
Q ss_pred -CCCccccCCCCCcEEEeccCCCcCCCc-ccCCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEcCCCCCCccchhhccC
Q 017559 173 -QAPSSIVDLNKLETLSLFECRGLVLPP-LLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQL 250 (369)
Q Consensus 173 -~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~ 250 (369)
..-+.+....+|+.|++++|...++|+ .+.+++.|+.|+++||+++.+|..+..+..|++|...+|.+..+| .+..+
T Consensus 373 d~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l 451 (1081)
T KOG0618|consen 373 DSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQL 451 (1081)
T ss_pred ccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhc
Confidence 334567788999999999999888885 677889999999999999999988999999999999999999999 78899
Q ss_pred CCCCEeccccccccccC--CC-cC-cccceecccCCcccc
Q 017559 251 SRLRWLYLVNCVKLQSL--PE-LP-LLLVMLGASDCKRLQ 286 (369)
Q Consensus 251 ~~L~~L~l~~~~~l~~~--~~-~~-~~L~~L~l~~c~~L~ 286 (369)
+.|+.+|++.| .++.+ +. .+ +.|++|+++|...+.
T Consensus 452 ~qL~~lDlS~N-~L~~~~l~~~~p~p~LkyLdlSGN~~l~ 490 (1081)
T KOG0618|consen 452 PQLKVLDLSCN-NLSEVTLPEALPSPNLKYLDLSGNTRLV 490 (1081)
T ss_pred CcceEEecccc-hhhhhhhhhhCCCcccceeeccCCcccc
Confidence 99999999877 44432 22 34 789999999988744
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.73 E-value=9.4e-18 Score=162.51 Aligned_cols=233 Identities=23% Similarity=0.350 Sum_probs=183.2
Q ss_pred CCccCCCCcCCCCccEEecCCCCCccccCCccC-CeeEEEcCCccccccCcccCCCCCCCEEeCcCcccccccchhhccC
Q 017559 8 SLRCFPQNIHFISSIKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKL 86 (369)
Q Consensus 8 ~l~~~p~~~~~~~L~~L~l~~~~~~~~~~~~~~-~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l 86 (369)
+++++|..+ .++++.|++++|. +..+|.... +|++|++++|.++.+|..+. ++|+.|++++|... .+|..+.
T Consensus 189 ~LtsLP~~I-p~~L~~L~Ls~N~-LtsLP~~l~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~-- 261 (754)
T PRK15370 189 GLTTIPACI-PEQITTLILDNNE-LKSLPENLQGNIKTLYANSNQLTSIPATLP--DTIQEMELSINRIT-ELPERLP-- 261 (754)
T ss_pred CcCcCCccc-ccCCcEEEecCCC-CCcCChhhccCCCEEECCCCccccCChhhh--ccccEEECcCCccC-cCChhHh--
Confidence 577888765 4679999999997 888886554 99999999999998886543 58999999997654 6776554
Q ss_pred CcCcEEecCCCcCcccCchhhhccCccceecccccccccccchhhhcccCCCeEeecCCCCCCCCCcccCCCcchhhhcc
Q 017559 87 KSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHA 166 (369)
Q Consensus 87 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 166 (369)
.+|+.|++++|.. ..+|..+. ++|++|++++|. ++.+|..+. ++|+.|++++|. +..+|..+ .++|+.|++
T Consensus 262 s~L~~L~Ls~N~L-~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp--~sL~~L~Ls~N~-Lt~LP~~l--~~sL~~L~L 332 (754)
T PRK15370 262 SALQSLDLFHNKI-SCLPENLP--EELRYLSVYDNS-IRTLPAHLP--SGITHLNVQSNS-LTALPETL--PPGLKTLEA 332 (754)
T ss_pred CCCCEEECcCCcc-CccccccC--CCCcEEECCCCc-cccCcccch--hhHHHHHhcCCc-cccCCccc--cccceeccc
Confidence 5899999998654 46676443 589999999774 445554432 478999999865 44555433 368999999
Q ss_pred CcccCCCCCccccCCCCCcEEEeccCCCcCCCcccCCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEcCCCCCCccchh
Q 017559 167 GLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTS 246 (369)
Q Consensus 167 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 246 (369)
.+|.++.+|..+ +++|+.|++++|....+|..+ .++|+.|++++|.+..+|..+. ..|+.|++++|+++.+|..
T Consensus 333 s~N~Lt~LP~~l--~~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L~~LP~s 406 (754)
T PRK15370 333 GENALTSLPASL--PPELQVLDVSKNQITVLPETL--PPTITTLDVSRNALTNLPENLP--AALQIMQASRNNLVRLPES 406 (754)
T ss_pred cCCccccCChhh--cCcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCcccCchh
Confidence 999999888766 379999999999988888655 3689999999999998877543 4799999999999987765
Q ss_pred h----ccCCCCCEecccccc
Q 017559 247 I----SQLSRLRWLYLVNCV 262 (369)
Q Consensus 247 ~----~~~~~L~~L~l~~~~ 262 (369)
+ ..++++..+++.+|+
T Consensus 407 l~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 407 LPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred HHHHhhcCCCccEEEeeCCC
Confidence 4 345889999999986
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.71 E-value=2.1e-16 Score=152.47 Aligned_cols=236 Identities=27% Similarity=0.292 Sum_probs=174.2
Q ss_pred CccEEecCCCCCccccCCccC-CeeEEEcCCccccccCcccCCCCCCCEEeCcCcccccccchhhccCCcCcEEecCCCc
Q 017559 20 SSIKIDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCI 98 (369)
Q Consensus 20 ~L~~L~l~~~~~~~~~~~~~~-~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 98 (369)
.-..|+++++. ++.+|..+. +|+.|++..|.++.+|.. .++|++|++++|.. ..+|.. .++|+.|++++|.
T Consensus 202 ~~~~LdLs~~~-LtsLP~~l~~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~L-tsLP~l---p~sL~~L~Ls~N~ 273 (788)
T PRK15387 202 GNAVLNVGESG-LTTLPDCLPAHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQL-TSLPVL---PPGLLELSIFSNP 273 (788)
T ss_pred CCcEEEcCCCC-CCcCCcchhcCCCEEEccCCcCCCCCCC---CCCCcEEEecCCcc-CcccCc---ccccceeeccCCc
Confidence 35678999987 889998665 999999999999998863 58999999999754 456642 4789999999975
Q ss_pred CcccCchhhhccCccceecccccccccccchhhhcccCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCccc
Q 017559 99 NLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSI 178 (369)
Q Consensus 99 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 178 (369)
...+|.. ..+|+.|++++|. +..+|. .+++|+.|++++|. +..+|.. ..+|+.|.+.+|.++.+|..
T Consensus 274 -L~~Lp~l---p~~L~~L~Ls~N~-Lt~LP~---~p~~L~~LdLS~N~-L~~Lp~l---p~~L~~L~Ls~N~L~~LP~l- 340 (788)
T PRK15387 274 -LTHLPAL---PSGLCKLWIFGNQ-LTSLPV---LPPGLQELSVSDNQ-LASLPAL---PSELCKLWAYNNQLTSLPTL- 340 (788)
T ss_pred -hhhhhhc---hhhcCEEECcCCc-cccccc---cccccceeECCCCc-cccCCCC---cccccccccccCcccccccc-
Confidence 4455543 3578899999775 455554 35789999999964 4455542 34688899999999888752
Q ss_pred cCCCCCcEEEeccCCCcCCCcccCCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEcCCCCCCccchhhccCCCCCEecc
Q 017559 179 VDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLYL 258 (369)
Q Consensus 179 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l 258 (369)
..+|+.|++++|....+|.. .++|+.|++++|.+..+|.. ..+|+.|++++|.++.+|.. .++|+.|++
T Consensus 341 --p~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdL 409 (788)
T PRK15387 341 --PSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLPVL---PSELKELMV 409 (788)
T ss_pred --ccccceEecCCCccCCCCCC---CcccceehhhccccccCccc---ccccceEEecCCcccCCCCc---ccCCCEEEc
Confidence 35899999999998888763 35677888888888877653 34688888888888877643 356888888
Q ss_pred ccccccccCCCcCcccceecccCCcccccCC
Q 017559 259 VNCVKLQSLPELPLLLVMLGASDCKRLQFLP 289 (369)
Q Consensus 259 ~~~~~l~~~~~~~~~L~~L~l~~c~~L~~l~ 289 (369)
++| .++.+|..+.+|+.|+++++ +++.+|
T Consensus 410 S~N-~LssIP~l~~~L~~L~Ls~N-qLt~LP 438 (788)
T PRK15387 410 SGN-RLTSLPMLPSGLLSLSVYRN-QLTRLP 438 (788)
T ss_pred cCC-cCCCCCcchhhhhhhhhccC-cccccC
Confidence 887 56777766666777777654 344444
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.67 E-value=1.3e-18 Score=163.86 Aligned_cols=242 Identities=26% Similarity=0.383 Sum_probs=165.3
Q ss_pred cCCCCccEEecCCCCCccccCCccC---CeeEEEcCCccccccCcccCCCCCCCEEeCcCcccccccchhhccCCcCcEE
Q 017559 16 IHFISSIKIDCYKCVNLREFPRISG---NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSL 92 (369)
Q Consensus 16 ~~~~~L~~L~l~~~~~~~~~~~~~~---~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 92 (369)
....+|++++++.+. +..+|+... +|+.+....|.+..+|..+....+|++|.+..|. ...+|+...++..|+.|
T Consensus 238 p~p~nl~~~dis~n~-l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tL 315 (1081)
T KOG0618|consen 238 PVPLNLQYLDISHNN-LSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTL 315 (1081)
T ss_pred cccccceeeecchhh-hhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhh-hhhCCCcccccceeeee
Confidence 356679999999998 888997666 9999999999999998888888899999998864 45677777789999999
Q ss_pred ecCCCcCcccCchhh-hccCc-cceecccccccccccch-hhhcccCCCeEeecCCCCCCCCCcccCCCcchhhhccCcc
Q 017559 93 DLSYCINLESFPEIL-EKMEL-LEEINLEEASNIKELPS-SIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLL 169 (369)
Q Consensus 93 ~l~~~~~~~~~~~~~-~~l~~-L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 169 (369)
++..|. +..+|+.+ ..... |+.|..+.+ .+...|. .-..+..|+.|.+.+|.........+.+.++|+.|++++|
T Consensus 316 dL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n-~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN 393 (1081)
T KOG0618|consen 316 DLQSNN-LPSLPDNFLAVLNASLNTLNVSSN-KLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN 393 (1081)
T ss_pred eehhcc-ccccchHHHhhhhHHHHHHhhhhc-cccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccc
Confidence 999864 44455422 22221 344444422 2222221 1123456677777776555544445666777777777777
Q ss_pred cCCCCCc-cccCCCCCcEEEeccCCCcCCCcccCCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEcCCCCCC--ccchh
Q 017559 170 AIPQAPS-SIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIE--SLPTS 246 (369)
Q Consensus 170 ~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~--~~~~~ 246 (369)
.+..+|+ .+.++..|++|++++|..+.+|+.+..++.|++|...+|.+..+| .+..++.|+.+|++.|.++ .++..
T Consensus 394 rL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~ 472 (1081)
T KOG0618|consen 394 RLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEA 472 (1081)
T ss_pred ccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhh
Confidence 7776664 455677777777777777777777777777777777777777777 4667777777777777766 33322
Q ss_pred hccCCCCCEeccccccc
Q 017559 247 ISQLSRLRWLYLVNCVK 263 (369)
Q Consensus 247 ~~~~~~L~~L~l~~~~~ 263 (369)
... |+|++||+++|..
T Consensus 473 ~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 473 LPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred CCC-cccceeeccCCcc
Confidence 221 6777777777754
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.66 E-value=4.3e-18 Score=130.30 Aligned_cols=172 Identities=27% Similarity=0.388 Sum_probs=124.3
Q ss_pred CCCCCccCCCCcCCCCccEEecCCCCCccccCCccC---CeeEEEcCCccccccCcccCCCCCCCEEeCcCcccccccch
Q 017559 5 GCESLRCFPQNIHFISSIKIDCYKCVNLREFPRISG---NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLST 81 (369)
Q Consensus 5 ~c~~l~~~p~~~~~~~L~~L~l~~~~~~~~~~~~~~---~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~ 81 (369)
|.+++.++|..+.+.+...|.+++|. +..+|..+. +|+.|++.++.++++|..++.++.|+.|++.-| ....+|.
T Consensus 19 giSsf~~~~gLf~~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lpr 96 (264)
T KOG0617|consen 19 GISSFEELPGLFNMSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPR 96 (264)
T ss_pred ccccHhhcccccchhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCcc
Confidence 45566677888888888888888887 777776665 777777788888888877888888888887763 4456677
Q ss_pred hhccCCcCcEEecCCCcCc-ccCchhhhccCccceecccccccccccchhhhcccCCCeEeecCCCCCCCCCcccCCCcc
Q 017559 82 SICKLKSLRSLDLSYCINL-ESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKS 160 (369)
Q Consensus 82 ~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 160 (369)
.|+.++.|++|++++|+.. ..+|..|..+..|+-|.+++| ....+|..++++++|+.|.+..+. +-.+|..++.++.
T Consensus 97 gfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~ 174 (264)
T KOG0617|consen 97 GFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTR 174 (264)
T ss_pred ccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHH
Confidence 7777888888888776544 346777777777777777754 355667777777777777777743 4456667777777
Q ss_pred hhhhccCcccCCCCCccccC
Q 017559 161 LERLHAGLLAIPQAPSSIVD 180 (369)
Q Consensus 161 L~~L~l~~~~~~~~~~~~~~ 180 (369)
|++|++++|.++.+|+.++.
T Consensus 175 lrelhiqgnrl~vlppel~~ 194 (264)
T KOG0617|consen 175 LRELHIQGNRLTVLPPELAN 194 (264)
T ss_pred HHHHhcccceeeecChhhhh
Confidence 77777777777766665544
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.61 E-value=6.3e-17 Score=144.99 Aligned_cols=221 Identities=24% Similarity=0.232 Sum_probs=125.9
Q ss_pred CeeEEEcCCcccc-----ccCcccCCCCCCCEEeCcCcccc------cccchhhccCCcCcEEecCCCcCcccCchhhhc
Q 017559 41 NVVELNLMCTPIE-----EVPLSIECLPNLETLEMSFCNSL------KRLSTSICKLKSLRSLDLSYCINLESFPEILEK 109 (369)
Q Consensus 41 ~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 109 (369)
+|+.++++++.++ .++..+...+++++++++++... ..++..+..+++|++|++++|......+..+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 5666676666652 34444555666777777665433 122344555677777777776555444444444
Q ss_pred cCc---cceeccccccccc----ccchhhhcc-cCCCeEeecCCCCCC----CCCcccCCCcchhhhccCcccCCC----
Q 017559 110 MEL---LEEINLEEASNIK----ELPSSIENL-EGLKQLKLTGCTKLG----SLPESLGNLKSLERLHAGLLAIPQ---- 173 (369)
Q Consensus 110 l~~---L~~L~l~~~~~~~----~~~~~~~~~-~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~---- 173 (369)
+.+ |++|++++|.... .+...+..+ ++|+.|++++|.... .+...+..+++|++|++.+|.+..
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 183 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR 183 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHH
Confidence 444 7777777655332 122234445 677777777765442 122334555667777777776652
Q ss_pred -CCccccCCCCCcEEEeccCCCc-----CCCcccCCCCCCcEEeccCCCCcc--CC---CC-CCCCCCCCEEEcCCCCCC
Q 017559 174 -APSSIVDLNKLETLSLFECRGL-----VLPPLLSGLSSLKKLELGDCEIME--IP---PD-IGCLSSLESLNLSGNNIE 241 (369)
Q Consensus 174 -~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~--~~---~~-~~~~~~L~~L~l~~~~l~ 241 (369)
++..+...++|++|++++|... .+...+..+++|++|++++|.+.+ +. .. ....+.|++|++++|.++
T Consensus 184 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 184 ALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 2223344567777777777632 222345566777777777777664 10 00 112367777777777765
Q ss_pred -----ccchhhccCCCCCEeccccc
Q 017559 242 -----SLPTSISQLSRLRWLYLVNC 261 (369)
Q Consensus 242 -----~~~~~~~~~~~L~~L~l~~~ 261 (369)
.+...+..+++|+++++++|
T Consensus 264 ~~~~~~l~~~~~~~~~L~~l~l~~N 288 (319)
T cd00116 264 DDGAKDLAEVLAEKESLLELDLRGN 288 (319)
T ss_pred cHHHHHHHHHHhcCCCccEEECCCC
Confidence 23334455677777777776
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.60 E-value=1.2e-17 Score=127.90 Aligned_cols=160 Identities=29% Similarity=0.404 Sum_probs=103.0
Q ss_pred CeeEEEcCCccccccCcccCCCCCCCEEeCcCcccccccchhhccCCcCcEEecCCCcCcccCchhhhccCccceecccc
Q 017559 41 NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEE 120 (369)
Q Consensus 41 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 120 (369)
+++.|-+++|+++.+|..++.+.+|+.|++++| ...++|.+++.+++|+.|+++.| ...
T Consensus 34 ~ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmn-rl~------------------- 92 (264)
T KOG0617|consen 34 NITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMN-RLN------------------- 92 (264)
T ss_pred hhhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchh-hhh-------------------
Confidence 444555555555555555555555555555542 33444545555555555555442 333
Q ss_pred cccccccchhhhcccCCCeEeecCCCCC-CCCCcccCCCcchhhhccCcccCCCCCccccCCCCCcEEEeccCCCcCCCc
Q 017559 121 ASNIKELPSSIENLEGLKQLKLTGCTKL-GSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPP 199 (369)
Q Consensus 121 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 199 (369)
..|..|+.++.|+.|++.+++.. ..+|..+..++.|+.|+++.|.+.-+|..++++++|+.|.+..|...++|.
T Consensus 93 -----~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpk 167 (264)
T KOG0617|consen 93 -----ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPK 167 (264)
T ss_pred -----cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcH
Confidence 34444555555555555554332 245666777778888888888888888888888888888888888888888
Q ss_pred ccCCCCCCcEEeccCCCCccCCCCCCC
Q 017559 200 LLSGLSSLKKLELGDCEIMEIPPDIGC 226 (369)
Q Consensus 200 ~~~~~~~L~~L~l~~~~~~~~~~~~~~ 226 (369)
.++.+..|++|++.||+++.+|..++.
T Consensus 168 eig~lt~lrelhiqgnrl~vlppel~~ 194 (264)
T KOG0617|consen 168 EIGDLTRLRELHIQGNRLTVLPPELAN 194 (264)
T ss_pred HHHHHHHHHHHhcccceeeecChhhhh
Confidence 888888888888888888877765443
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.58 E-value=4e-16 Score=134.33 Aligned_cols=257 Identities=23% Similarity=0.248 Sum_probs=153.5
Q ss_pred EecCCCCCccccCCccC-CeeEEEcCCccccccCc-ccCCCCCCCEEeCcCcccccccchhhccCCcCcEEecCCCcCcc
Q 017559 24 IDCYKCVNLREFPRISG-NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLE 101 (369)
Q Consensus 24 L~l~~~~~~~~~~~~~~-~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 101 (369)
.+.++-. +.+||...+ ....+.+..|.|+.+|. +|+.+++|+.|||++|.+...-|.+|.+++.|..|.+.+++.++
T Consensus 51 VdCr~~G-L~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 51 VDCRGKG-LTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred EEccCCC-cccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 3444433 777776666 77777887888887775 67778888888888877766667778778888777777755666
Q ss_pred cCc-hhhhccCccceecccccccccccchhhhcccCCCeEeecCCCCCCCCCc-ccCCCcchhhhccCcccCC---CC--
Q 017559 102 SFP-EILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPE-SLGNLKSLERLHAGLLAIP---QA-- 174 (369)
Q Consensus 102 ~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~---~~-- 174 (369)
++| ..|..+..|+.|.+.-|+..-.....+..++++..|.+..+ ....+++ .+..+.+++.+.+..+.+. .+
T Consensus 130 ~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~w 208 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPW 208 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCccccccccch
Confidence 655 56667777777766655444344455666667766666663 3333333 4555666666665554421 00
Q ss_pred --------CccccCC----------------------CCCcEE----EeccCCCcCCC-cccCCCCCCcEEeccCCCCcc
Q 017559 175 --------PSSIVDL----------------------NKLETL----SLFECRGLVLP-PLLSGLSSLKKLELGDCEIME 219 (369)
Q Consensus 175 --------~~~~~~~----------------------~~L~~L----~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~ 219 (369)
+-.+... ..++.+ .-....+...| ..|..+++|++|++++|++++
T Consensus 209 la~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~ 288 (498)
T KOG4237|consen 209 LADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR 288 (498)
T ss_pred hhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccch
Confidence 0000000 001111 11111233333 246677788888888888877
Q ss_pred C-CCCCCCCCCCCEEEcCCCCCCccc-hhhccCCCCCEeccccccccccCC-CcC---cccceecccCCc
Q 017559 220 I-PPDIGCLSSLESLNLSGNNIESLP-TSISQLSRLRWLYLVNCVKLQSLP-ELP---LLLVMLGASDCK 283 (369)
Q Consensus 220 ~-~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~l~~~~-~~~---~~L~~L~l~~c~ 283 (369)
+ ..++.....+++|.+..|++..+. ..+.++.+|+.|++.+| .++.+. ..+ .+|.++.+.+.|
T Consensus 289 i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N-~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 289 IEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDN-QITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred hhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCC-eeEEEecccccccceeeeeehccCc
Confidence 4 345677777888888888777665 34567777888888877 444432 222 345555554433
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.56 E-value=4.5e-16 Score=139.46 Aligned_cols=237 Identities=23% Similarity=0.186 Sum_probs=161.6
Q ss_pred EEcCCcccc--ccCcccCCCCCCCEEeCcCccccc----ccchhhccCCcCcEEecCCCcCc------ccCchhhhccCc
Q 017559 45 LNLMCTPIE--EVPLSIECLPNLETLEMSFCNSLK----RLSTSICKLKSLRSLDLSYCINL------ESFPEILEKMEL 112 (369)
Q Consensus 45 L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~------~~~~~~~~~l~~ 112 (369)
|++.++.++ .....+..+.+|+.+++++|.... .++..+...++|++++++++... ..++..+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 455555554 333445666779999999987533 34555677888999999987554 123456777899
Q ss_pred cceecccccccccccchhhhcccC---CCeEeecCCCCCC----CCCcccCCC-cchhhhccCcccCC-----CCCcccc
Q 017559 113 LEEINLEEASNIKELPSSIENLEG---LKQLKLTGCTKLG----SLPESLGNL-KSLERLHAGLLAIP-----QAPSSIV 179 (369)
Q Consensus 113 L~~L~l~~~~~~~~~~~~~~~~~~---L~~L~l~~~~~~~----~~~~~~~~l-~~L~~L~l~~~~~~-----~~~~~~~ 179 (369)
|++|++++|......+..+..+.. |++|++++|.... .+...+..+ ++|+.+++++|.++ .+...+.
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 162 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR 162 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHH
Confidence 999999988766555555555554 9999999976542 122334566 88999999999887 2334566
Q ss_pred CCCCCcEEEeccCCCc-----CCCcccCCCCCCcEEeccCCCCcc-----CCCCCCCCCCCCEEEcCCCCCCc--cchhh
Q 017559 180 DLNKLETLSLFECRGL-----VLPPLLSGLSSLKKLELGDCEIME-----IPPDIGCLSSLESLNLSGNNIES--LPTSI 247 (369)
Q Consensus 180 ~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~l~~--~~~~~ 247 (369)
.+++|++|++++|... .++..+...++|+.|++++|.+.+ +...+..+++|++|++++|.++. +....
T Consensus 163 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~ 242 (319)
T cd00116 163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALA 242 (319)
T ss_pred hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHH
Confidence 6788999999998744 223344556799999999998864 33346678899999999998873 22212
Q ss_pred cc----CCCCCEecccccccccc-----CCC---cCcccceecccCC
Q 017559 248 SQ----LSRLRWLYLVNCVKLQS-----LPE---LPLLLVMLGASDC 282 (369)
Q Consensus 248 ~~----~~~L~~L~l~~~~~l~~-----~~~---~~~~L~~L~l~~c 282 (369)
.. .+.|++|++++| .+++ +.. ..++|++++++++
T Consensus 243 ~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N 288 (319)
T cd00116 243 SALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGN 288 (319)
T ss_pred HHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCC
Confidence 22 478999999998 3431 111 1245666766654
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.46 E-value=5.2e-15 Score=127.58 Aligned_cols=254 Identities=20% Similarity=0.187 Sum_probs=184.0
Q ss_pred CCCccCCCCcCCCCccEEecCCCCCccccCCc-cC---CeeEEEcCCcccccc-CcccCCCCCCCEEeCcCcccccccc-
Q 017559 7 ESLRCFPQNIHFISSIKIDCYKCVNLREFPRI-SG---NVVELNLMCTPIEEV-PLSIECLPNLETLEMSFCNSLKRLS- 80 (369)
Q Consensus 7 ~~l~~~p~~~~~~~L~~L~l~~~~~~~~~~~~-~~---~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~- 80 (369)
.+|+++|... .+.-..+.+..|. ++.+|+. |+ +||.|+++.|.|+.| |..|..+++|..|-+.+++.++.+|
T Consensus 56 ~GL~eVP~~L-P~~tveirLdqN~-I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k 133 (498)
T KOG4237|consen 56 KGLTEVPANL-PPETVEIRLDQNQ-ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK 133 (498)
T ss_pred CCcccCcccC-CCcceEEEeccCC-cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence 5788899887 4556789999998 8999864 33 999999999999976 4579999999999988867777777
Q ss_pred hhhccCCcCcEEecCCCcCcccCchhhhccCccceecccccccccccchhhhcccCCCeEeecCCCCCCC----------
Q 017559 81 TSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGS---------- 150 (369)
Q Consensus 81 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---------- 150 (369)
..|+++..|+.|.+.-|...-.....+..+++|..|.+.+|.....-...+..+.+++.+.+..+..+..
T Consensus 134 ~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~ 213 (498)
T KOG4237|consen 134 GAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDL 213 (498)
T ss_pred hHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHH
Confidence 4788899999999988877777788999999999999998765444334677777888887776552211
Q ss_pred --CCcccCCCcc----------------------hhhh---ccCcccCC-CCC-ccccCCCCCcEEEeccCCCcCCC-cc
Q 017559 151 --LPESLGNLKS----------------------LERL---HAGLLAIP-QAP-SSIVDLNKLETLSLFECRGLVLP-PL 200 (369)
Q Consensus 151 --~~~~~~~l~~----------------------L~~L---~l~~~~~~-~~~-~~~~~~~~L~~L~l~~~~~~~~~-~~ 200 (369)
.+..++.... ++.+ -...+... ..| ..|..+++|++|++++|..+.+. .+
T Consensus 214 a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~a 293 (498)
T KOG4237|consen 214 AMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGA 293 (498)
T ss_pred hhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhh
Confidence 1111111110 1111 00111111 111 23667889999999999976665 47
Q ss_pred cCCCCCCcEEeccCCCCccCCC-CCCCCCCCCEEEcCCCCCCc-cchhhccCCCCCEecccccc
Q 017559 201 LSGLSSLKKLELGDCEIMEIPP-DIGCLSSLESLNLSGNNIES-LPTSISQLSRLRWLYLVNCV 262 (369)
Q Consensus 201 ~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~L~~L~l~~~~ 262 (369)
|.+..+++.|.+..|++..+.. .+.++..|+.|++.+|+|+. -|..|.....|.+|++-.|+
T Consensus 294 Fe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 294 FEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred hcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 8888899999999998877433 36778889999999999984 44566778888888887664
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.39 E-value=4.2e-13 Score=132.52 Aligned_cols=297 Identities=25% Similarity=0.274 Sum_probs=184.2
Q ss_pred CCccCCCCcCCCCccEEecCCCCCccccCCccC--CeeEEEcCCcc--ccccCc-ccCCCCCCCEEeCcCcccccccchh
Q 017559 8 SLRCFPQNIHFISSIKIDCYKCVNLREFPRISG--NVVELNLMCTP--IEEVPL-SIECLPNLETLEMSFCNSLKRLSTS 82 (369)
Q Consensus 8 ~l~~~p~~~~~~~L~~L~l~~~~~~~~~~~~~~--~L~~L~l~~~~--~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~ 82 (369)
++.+.|........+.+.+.++. +..++.... .|++|-+..+. +..++. .|..++.|++||+++|.....+|..
T Consensus 512 ~~~~~~~~~~~~~~rr~s~~~~~-~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~ 590 (889)
T KOG4658|consen 512 GLSEIPQVKSWNSVRRMSLMNNK-IEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS 590 (889)
T ss_pred CccccccccchhheeEEEEeccc-hhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH
Confidence 34456666677788888888877 666665544 78888886664 455544 3778999999999998888899999
Q ss_pred hccCCcCcEEecCCCcCcccCchhhhccCccceecccccccccccchhhhcccCCCeEeecCCCC--CCCCCcccCCCcc
Q 017559 83 ICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTK--LGSLPESLGNLKS 160 (369)
Q Consensus 83 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~~~~~l~~ 160 (369)
++.+.+||+|+++++ ....+|..+.++++|.+|++..+.....++.....+++|+.|.+..... ....-..+..+.+
T Consensus 591 I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~ 669 (889)
T KOG4658|consen 591 IGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEH 669 (889)
T ss_pred HhhhhhhhcccccCC-CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccc
Confidence 999999999999984 5668999999999999999997776666666677799999999876331 1111123445555
Q ss_pred hhhhccCcccCCCCCccccCCCCCc----EEEeccCCCcCCCcccCCCCCCcEEeccCCCCccCCC-CC-----CC-CCC
Q 017559 161 LERLHAGLLAIPQAPSSIVDLNKLE----TLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPP-DI-----GC-LSS 229 (369)
Q Consensus 161 L~~L~l~~~~~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~-----~~-~~~ 229 (369)
|+.+....... .+...+..+..|+ .+.+.++.....+..+..+.+|+.|.+.+|.+.+... +. .. +++
T Consensus 670 L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~ 748 (889)
T KOG4658|consen 670 LENLSITISSV-LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPN 748 (889)
T ss_pred hhhheeecchh-HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHH
Confidence 55555544333 1112222333333 2332333334444556677788888888887765211 11 11 334
Q ss_pred CCEEEcCCCCCCccchhhccCCCCCEeccccccccccCCCc-------------Cccccee----cccCCcccccCCCch
Q 017559 230 LESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPEL-------------PLLLVML----GASDCKRLQFLPELT 292 (369)
Q Consensus 230 L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-------------~~~L~~L----~l~~c~~L~~l~~~~ 292 (369)
+..+.+.++..-..+.+..-.++|+.|.+..|..++++.+. +.+++.+ ++.+++++..++...
T Consensus 749 l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~ 828 (889)
T KOG4658|consen 749 LSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSF 828 (889)
T ss_pred HHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCc
Confidence 44444444433333334445677888888777766654321 1223333 233334444444444
Q ss_pred hhhHHhhHHHHHhhh
Q 017559 293 SCLEELDASILQALS 307 (369)
Q Consensus 293 ~~l~~l~~~~~~~l~ 307 (369)
+.++.+.+..||++.
T Consensus 829 ~~l~~~~ve~~p~l~ 843 (889)
T KOG4658|consen 829 LKLEELIVEECPKLG 843 (889)
T ss_pred cchhheehhcCcccc
Confidence 556666666666554
No 24
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.39 E-value=2.4e-15 Score=130.55 Aligned_cols=295 Identities=19% Similarity=0.214 Sum_probs=186.7
Q ss_pred CeeEEEcCCcccc---ccCcccCCCCCCCEEeCcCccccccc--chhhccCCcCcEEecCCCcCcccCc--hhhhccCcc
Q 017559 41 NVVELNLMCTPIE---EVPLSIECLPNLETLEMSFCNSLKRL--STSICKLKSLRSLDLSYCINLESFP--EILEKMELL 113 (369)
Q Consensus 41 ~L~~L~l~~~~~~---~l~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L 113 (369)
.|+.|++++..-. .+-....++|+++.|.+.+|..+++. -..-..|++|++|++..|...+... .....|++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 6778887554322 33334567788888888888765432 2223558888888888876665432 345678888
Q ss_pred ceecccccccccc--cchhhhcccCCCeEeecCCCCCCC--CCcccCCCcchhhhccCcccCC-CC--CccccCCCCCcE
Q 017559 114 EEINLEEASNIKE--LPSSIENLEGLKQLKLTGCTKLGS--LPESLGNLKSLERLHAGLLAIP-QA--PSSIVDLNKLET 186 (369)
Q Consensus 114 ~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~-~~--~~~~~~~~~L~~ 186 (369)
+++++++|..+.. +.....++.+++.+...||.-.+. +...-..+..+.++++..|... .. -..-..+..|+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 8888888876653 333345666677776666653322 1111234455666665565422 11 112234778888
Q ss_pred EEeccCCCc-C--CCcccCCCCCCcEEeccCCCCcc---CCCCCCCCCCCCEEEcCCCCCC---ccchhhccCCCCCEec
Q 017559 187 LSLFECRGL-V--LPPLLSGLSSLKKLELGDCEIME---IPPDIGCLSSLESLNLSGNNIE---SLPTSISQLSRLRWLY 257 (369)
Q Consensus 187 L~l~~~~~~-~--~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~L~~L~l~~~~l~---~~~~~~~~~~~L~~L~ 257 (369)
++.+++... . +-..-.++.+|+.+.+.+|+.-+ +...-.+++.|+.+++..+... .+-..-.+++.|+++.
T Consensus 299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls 378 (483)
T KOG4341|consen 299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS 378 (483)
T ss_pred hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence 988888732 1 11233567899999999987432 3333467889999999998443 2444446789999999
Q ss_pred cccccccccCCCcCcccceecccCCcccccCCCchhhhHHhhHHHHHhhhccccccccCCCCCcEEEecCccCcChhhHH
Q 017559 258 LVNCVKLQSLPELPLLLVMLGASDCKRLQFLPELTSCLEELDASILQALSNRTGERLSKHMSPVQLIFANCLKLNESIWA 337 (369)
Q Consensus 258 l~~~~~l~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~l~~~~~~ 337 (369)
+++|..+++- +-..+.....+...++.+++.+|+.+++...+.+.....++++.+.+|...+...+.
T Consensus 379 lshce~itD~-------------gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~ 445 (483)
T KOG4341|consen 379 LSHCELITDE-------------GIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAIS 445 (483)
T ss_pred hhhhhhhhhh-------------hhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhH
Confidence 9999877763 112233333444555666677777777777777777777788888888888887777
Q ss_pred HHHHHHHHHHH
Q 017559 338 DLQKRIRHMII 348 (369)
Q Consensus 338 ~~~~~~~~~~~ 348 (369)
...++++.+..
T Consensus 446 ~~~~~lp~i~v 456 (483)
T KOG4341|consen 446 RFATHLPNIKV 456 (483)
T ss_pred HHHhhCcccee
Confidence 77666665543
No 25
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.28 E-value=2.6e-12 Score=126.96 Aligned_cols=257 Identities=27% Similarity=0.363 Sum_probs=184.0
Q ss_pred ccccCCccC--CeeEEEcCCccccccCcccCCCCCCCEEeCcCccc-ccccc-hhhccCCcCcEEecCCCcCcccCchhh
Q 017559 32 LREFPRISG--NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNS-LKRLS-TSICKLKSLRSLDLSYCINLESFPEIL 107 (369)
Q Consensus 32 ~~~~~~~~~--~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~-~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~ 107 (369)
....|.... ..+..++.++.+..++... .++.|++|-+..+.. ...++ ..|..++.|++||+++|.....+|..+
T Consensus 513 ~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I 591 (889)
T KOG4658|consen 513 LSEIPQVKSWNSVRRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI 591 (889)
T ss_pred ccccccccchhheeEEEEeccchhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH
Confidence 334444333 8889999888887776643 456899999988752 33343 457789999999999999999999999
Q ss_pred hccCccceecccccccccccchhhhcccCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCC---CCCccccCCCCC
Q 017559 108 EKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIP---QAPSSIVDLNKL 184 (369)
Q Consensus 108 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~---~~~~~~~~~~~L 184 (369)
+.+.+||+|++++ ..+..+|..+.++..|.+|++..+.....++.....+.+|++|.+...... .....+..+.+|
T Consensus 592 ~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L 670 (889)
T KOG4658|consen 592 GELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHL 670 (889)
T ss_pred hhhhhhhcccccC-CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccch
Confidence 9999999999995 557789999999999999999987777777666667999999998776533 122344566677
Q ss_pred cEEEeccCCCcCCCcccCCCCCCc----EEeccCCCCccCCCCCCCCCCCCEEEcCCCCCCccch-h-----hcc-CCCC
Q 017559 185 ETLSLFECRGLVLPPLLSGLSSLK----KLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPT-S-----ISQ-LSRL 253 (369)
Q Consensus 185 ~~L~l~~~~~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~-----~~~-~~~L 253 (369)
+.+.+..... .+...+.....|. .+.+.++........+..+.+|+.|.+.++.+.++.. . ... ++++
T Consensus 671 ~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l 749 (889)
T KOG4658|consen 671 ENLSITISSV-LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNL 749 (889)
T ss_pred hhheeecchh-HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHH
Confidence 7776654443 1111122223332 3444445555566667889999999999997763321 1 122 6678
Q ss_pred CEeccccccccccCC--CcCcccceecccCCcccccCCCc
Q 017559 254 RWLYLVNCVKLQSLP--ELPLLLVMLGASDCKRLQFLPEL 291 (369)
Q Consensus 254 ~~L~l~~~~~l~~~~--~~~~~L~~L~l~~c~~L~~l~~~ 291 (369)
..+.+.+|...+... .++++|+.|.+.+|+.++.....
T Consensus 750 ~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~ 789 (889)
T KOG4658|consen 750 SKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPK 789 (889)
T ss_pred HHHHhhccccccccchhhccCcccEEEEecccccccCCCH
Confidence 888888888777665 36799999999999988765543
No 26
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.24 E-value=1.3e-13 Score=119.88 Aligned_cols=299 Identities=18% Similarity=0.219 Sum_probs=195.2
Q ss_pred CccEEecCCCCCccccC-----CccCCeeEEEc-CCccccc--cCcccCCCCCCCEEeCcCcccccccc--hhhccCCcC
Q 017559 20 SSIKIDCYKCVNLREFP-----RISGNVVELNL-MCTPIEE--VPLSIECLPNLETLEMSFCNSLKRLS--TSICKLKSL 89 (369)
Q Consensus 20 ~L~~L~l~~~~~~~~~~-----~~~~~L~~L~l-~~~~~~~--l~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L 89 (369)
.|+.|.+.|+.....-+ ..-+++++|.+ .+.++++ +...-..+++|+++++..|..++... .....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 46777888776443322 12227777777 4444442 22233568889999999887766432 234668999
Q ss_pred cEEecCCCcCccc--CchhhhccCccceecccccccccc--cchhhhcccCCCeEeecCCCCCCCCC--cccCCCcchhh
Q 017559 90 RSLDLSYCINLES--FPEILEKMELLEEINLEEASNIKE--LPSSIENLEGLKQLKLTGCTKLGSLP--ESLGNLKSLER 163 (369)
Q Consensus 90 ~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~ 163 (369)
++|++++|..... +....+.++.++.+...||...+. +...-..+..+.++++..|..+++.. ..-..+..|+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 9999999876544 334556677788887777765541 22222345667777777776665533 12245778888
Q ss_pred hccCcccCC-C--CCccccCCCCCcEEEeccCC---CcCCCcccCCCCCCcEEeccCCCCcc---CCCCCCCCCCCCEEE
Q 017559 164 LHAGLLAIP-Q--APSSIVDLNKLETLSLFECR---GLVLPPLLSGLSSLKKLELGDCEIME---IPPDIGCLSSLESLN 234 (369)
Q Consensus 164 L~l~~~~~~-~--~~~~~~~~~~L~~L~l~~~~---~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~L~~L~ 234 (369)
+..+++... . +.....++.+|+.+.+..|. ...+...-.+++.|+.+++.++.... +.....+++.|+++.
T Consensus 299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls 378 (483)
T KOG4341|consen 299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS 378 (483)
T ss_pred hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence 888777542 1 11223467899999999988 22222334578899999999886644 444457899999999
Q ss_pred cCCCC-CCcc-----chhhccCCCCCEeccccccccccCCCcCcccceecccCCcccccCCCchhhhHHhhHHHHHhhhc
Q 017559 235 LSGNN-IESL-----PTSISQLSRLRWLYLVNCVKLQSLPELPLLLVMLGASDCKRLQFLPELTSCLEELDASILQALSN 308 (369)
Q Consensus 235 l~~~~-l~~~-----~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~l~~l~~~~~~~l~~ 308 (369)
+++|. +++. .....+...|..+.+++|+.+++ ..|++|. .|++|+. +++.+|+.++.
T Consensus 379 lshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d-----~~Le~l~--~c~~Ler----------i~l~~~q~vtk 441 (483)
T KOG4341|consen 379 LSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITD-----ATLEHLS--ICRNLER----------IELIDCQDVTK 441 (483)
T ss_pred hhhhhhhhhhhhhhhhhccccccccceeeecCCCCchH-----HHHHHHh--hCcccce----------eeeechhhhhh
Confidence 99983 3322 33345677889999999987765 3344433 3555554 56777888888
Q ss_pred cccccccCCCCCcEEEecCccCcChhh
Q 017559 309 RTGERLSKHMSPVQLIFANCLKLNESI 335 (369)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~c~~l~~~~ 335 (369)
.++..+..++|..++.-...+...+..
T Consensus 442 ~~i~~~~~~lp~i~v~a~~a~~t~p~~ 468 (483)
T KOG4341|consen 442 EAISRFATHLPNIKVHAYFAPVTPPGF 468 (483)
T ss_pred hhhHHHHhhCccceehhhccCCCCccc
Confidence 888888888888887766665555543
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.12 E-value=1.2e-10 Score=107.46 Aligned_cols=193 Identities=34% Similarity=0.481 Sum_probs=132.8
Q ss_pred EEeCcCcccccccchhhccCCcCcEEecCCCcCcccCchhhhccC-ccceecccccccccccchhhhcccCCCeEeecCC
Q 017559 67 TLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKME-LLEEINLEEASNIKELPSSIENLEGLKQLKLTGC 145 (369)
Q Consensus 67 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 145 (369)
.++...+....... .+.....++.|++.++ ....++.....+. +|++|+++++. +..++..+..+++|+.|+++.|
T Consensus 97 ~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNIS-ELLELTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCch-hhhcccceeEEecCCc-ccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCc
Confidence 45555544322222 2444567788887774 4455666666664 78888888543 4445455677888888888874
Q ss_pred CCCCCCCcccCCCcchhhhccCcccCCCCCccccCCCCCcEEEeccCCCcCCCcccCCCCCCcEEeccCCCCccCCCCCC
Q 017559 146 TKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIG 225 (369)
Q Consensus 146 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 225 (369)
+ +..++...+..++|+.++++++.+..+|........|+++.+++|.....+..+..+.++..+.+.++++..++..+.
T Consensus 174 ~-l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~ 252 (394)
T COG4886 174 D-LSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIG 252 (394)
T ss_pred h-hhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhc
Confidence 4 555555445777888888888888888776656667888888888655556566777777777777777777666677
Q ss_pred CCCCCCEEEcCCCCCCccchhhccCCCCCEecccccccc
Q 017559 226 CLSSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKL 264 (369)
Q Consensus 226 ~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~l 264 (369)
.++++++|++++|.++.++. ++...+++.|+++++...
T Consensus 253 ~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 253 NLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred cccccceecccccccccccc-ccccCccCEEeccCcccc
Confidence 77788888888888887776 777788888888877443
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.7e-11 Score=107.42 Aligned_cols=202 Identities=25% Similarity=0.203 Sum_probs=127.9
Q ss_pred CCCCCCCEEeCcCcccccccc-hhhccCCcCcEEecCCCcCc--ccCchhhhccCccceecccccccccccch-hhhccc
Q 017559 60 ECLPNLETLEMSFCNSLKRLS-TSICKLKSLRSLDLSYCINL--ESFPEILEKMELLEEINLEEASNIKELPS-SIENLE 135 (369)
Q Consensus 60 ~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~ 135 (369)
.++.+|+.+.+.++....... .....|++++.|++++|-.. ..+......+++|+.|+++.|........ .-..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 455667777777654322111 23456778888888775222 12345566778888888876654332211 112466
Q ss_pred CCCeEeecCCCCCC-CCCcccCCCcchhhhccCccc-CCCCCccccCCCCCcEEEeccCCCcCCC--cccCCCCCCcEEe
Q 017559 136 GLKQLKLTGCTKLG-SLPESLGNLKSLERLHAGLLA-IPQAPSSIVDLNKLETLSLFECRGLVLP--PLLSGLSSLKKLE 211 (369)
Q Consensus 136 ~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~ 211 (369)
.|+.|.+++|.... .+...+..+|+|+.|++.+|. +........-+..|++|++++|.....+ ...+.++.|+.|.
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 78888888877542 233345667888888888884 2222222333567888888888865555 3466788888888
Q ss_pred ccCCCCcc--CCCC-----CCCCCCCCEEEcCCCCCCccc--hhhccCCCCCEeccccc
Q 017559 212 LGDCEIME--IPPD-----IGCLSSLESLNLSGNNIESLP--TSISQLSRLRWLYLVNC 261 (369)
Q Consensus 212 l~~~~~~~--~~~~-----~~~~~~L~~L~l~~~~l~~~~--~~~~~~~~L~~L~l~~~ 261 (369)
++.|++.+ .++. ...+++|++|++..|.+.+++ ..+..+++|++|.+..+
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccc
Confidence 88888877 3333 355788999999999887665 33455677788776655
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.09 E-value=3.7e-11 Score=95.88 Aligned_cols=128 Identities=28% Similarity=0.295 Sum_probs=41.4
Q ss_pred cCCCcchhhhccCcccCCCCCcccc-CCCCCcEEEeccCCCcCCCcccCCCCCCcEEeccCCCCccCCCCC-CCCCCCCE
Q 017559 155 LGNLKSLERLHAGLLAIPQAPSSIV-DLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDI-GCLSSLES 232 (369)
Q Consensus 155 ~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~ 232 (369)
+.++.++++|++.++.+..+. .+. .+.+|+.|++++|....+.. +..+++|++|++++|.+.++...+ ..+++|++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~-l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEG-LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--TT-----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred ccccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccC-ccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 344456677777777777653 333 46677777777777666553 556777777888877777764333 34677888
Q ss_pred EEcCCCCCCccc--hhhccCCCCCEeccccccccccCCCcCcccceecccCCcccccCC
Q 017559 233 LNLSGNNIESLP--TSISQLSRLRWLYLVNCVKLQSLPELPLLLVMLGASDCKRLQFLP 289 (369)
Q Consensus 233 L~l~~~~l~~~~--~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~c~~L~~l~ 289 (369)
|++++|++..+. ..+..+++|+.|++.+||--.. +..+..-++.+|+|+.++
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-----~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-----KNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-----TTHHHHHHHH-TT-SEET
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-----hhHHHHHHHHcChhheeC
Confidence 888887776443 3456777888888877753221 223334444455555444
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.08 E-value=1e-11 Score=105.93 Aligned_cols=221 Identities=21% Similarity=0.219 Sum_probs=143.5
Q ss_pred CeeEEEcCCcccc-----ccCcccCCCCCCCEEeCcCccc---ccccc-------hhhccCCcCcEEecCCCcCcccC--
Q 017559 41 NVVELNLMCTPIE-----EVPLSIECLPNLETLEMSFCNS---LKRLS-------TSICKLKSLRSLDLSYCINLESF-- 103 (369)
Q Consensus 41 ~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~---~~~~~-------~~~~~l~~L~~L~l~~~~~~~~~-- 103 (369)
.++.+++++|.+. .+.+.+.+.+.|+..++++-.. ...+| ..+-.+++|++|+||.|-.....
T Consensus 31 s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~ 110 (382)
T KOG1909|consen 31 SLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIR 110 (382)
T ss_pred ceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchH
Confidence 6777777777765 2334455666777777775211 11222 23345678888888886444332
Q ss_pred --chhhhccCccceecccccccccccc-------------hhhhcccCCCeEeecCCCCCCCCC-----cccCCCcchhh
Q 017559 104 --PEILEKMELLEEINLEEASNIKELP-------------SSIENLEGLKQLKLTGCTKLGSLP-----ESLGNLKSLER 163 (369)
Q Consensus 104 --~~~~~~l~~L~~L~l~~~~~~~~~~-------------~~~~~~~~L~~L~l~~~~~~~~~~-----~~~~~l~~L~~ 163 (369)
-..+.++..|++|.+.+|....... .....-+.|+.+...+| .+...+ ..+...+.|+.
T Consensus 111 ~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~ga~~~A~~~~~~~~lee 189 (382)
T KOG1909|consen 111 GLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGGATALAEAFQSHPTLEE 189 (382)
T ss_pred HHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccccccHHHHHHHHHhccccce
Confidence 2456778888888888554332111 11234568888888774 344333 34566788899
Q ss_pred hccCcccCC--CC---CccccCCCCCcEEEeccCCCc-----CCCcccCCCCCCcEEeccCCCCcc-----CCCC-CCCC
Q 017559 164 LHAGLLAIP--QA---PSSIVDLNKLETLSLFECRGL-----VLPPLLSGLSSLKKLELGDCEIME-----IPPD-IGCL 227 (369)
Q Consensus 164 L~l~~~~~~--~~---~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~-~~~~ 227 (369)
+.+..|.+. ++ ...+..|++|+.|++.+|..+ .+...++.+++|+.|++++|.+.+ +... -...
T Consensus 190 vr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~ 269 (382)
T KOG1909|consen 190 VRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESA 269 (382)
T ss_pred EEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccC
Confidence 998888875 22 245677899999999988743 233467778899999999998866 1111 2347
Q ss_pred CCCCEEEcCCCCCC-----ccchhhccCCCCCEecccccc
Q 017559 228 SSLESLNLSGNNIE-----SLPTSISQLSRLRWLYLVNCV 262 (369)
Q Consensus 228 ~~L~~L~l~~~~l~-----~~~~~~~~~~~L~~L~l~~~~ 262 (369)
|+|+++.+.+|.++ .+...+..-|.|+.|++++|.
T Consensus 270 p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 270 PSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred CCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 89999999999877 222344567889999999884
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=5.7e-11 Score=104.27 Aligned_cols=201 Identities=17% Similarity=0.154 Sum_probs=107.0
Q ss_pred CeeEEEcCCccccccCc--ccCCCCCCCEEeCcCcccc--cccchhhccCCcCcEEecCCCcCcccCc-hhhhccCccce
Q 017559 41 NVVELNLMCTPIEEVPL--SIECLPNLETLEMSFCNSL--KRLSTSICKLKSLRSLDLSYCINLESFP-EILEKMELLEE 115 (369)
Q Consensus 41 ~L~~L~l~~~~~~~l~~--~~~~l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~ 115 (369)
+|+...++...+...+. ....|++++.||+++|-.. ..+......+++|+.|+++.|....-.. ..-..+++|+.
T Consensus 122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~ 201 (505)
T KOG3207|consen 122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQ 201 (505)
T ss_pred hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhhe
Confidence 56666666665554442 3455666666666664322 2333444556666666666653322111 11124556666
Q ss_pred eccccccccc-ccchhhhcccCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCC--ccccCCCCCcEEEeccC
Q 017559 116 INLEEASNIK-ELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAP--SSIVDLNKLETLSLFEC 192 (369)
Q Consensus 116 L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~ 192 (369)
|.++.|...- ++-..+..+|+|+.|.+.+|...........-+..|++|++++|.+...+ .....++.|+.|+++.+
T Consensus 202 L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t 281 (505)
T KOG3207|consen 202 LVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST 281 (505)
T ss_pred EEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcccc
Confidence 6666655332 22233445666666666665422222122233455666666666665443 33455666666666666
Q ss_pred CCcCC--Ccc-----cCCCCCCcEEeccCCCCccCCC--CCCCCCCCCEEEcCCCCCC
Q 017559 193 RGLVL--PPL-----LSGLSSLKKLELGDCEIMEIPP--DIGCLSSLESLNLSGNNIE 241 (369)
Q Consensus 193 ~~~~~--~~~-----~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~l~ 241 (369)
...++ |+. ...+++|+.|++..|++.+++. .+..+++|+.|.+..|.++
T Consensus 282 gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 282 GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred CcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 53322 221 2456677777777777765432 2445566666666666554
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.04 E-value=2.4e-11 Score=109.94 Aligned_cols=211 Identities=27% Similarity=0.387 Sum_probs=153.3
Q ss_pred EEcCCccccccCcccC--CCCCCCEEeCcCcccccccchhhccCCcCcEEecCCCcCcccCchhhhccCccceecccccc
Q 017559 45 LNLMCTPIEEVPLSIE--CLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEAS 122 (369)
Q Consensus 45 L~l~~~~~~~l~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 122 (369)
|.|++.++..+|..-. .+..-...+++.|. ...+|..+..+..|+.+.++.| ....+|..+.++..|.+++++.|+
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR-~~elp~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~Nq 132 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNR-FSELPEEACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSNQ 132 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhccccc-cccCchHHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccch
Confidence 3455555555554222 22333456777743 4466766777788888888773 556788888888888888888554
Q ss_pred cccccchhhhcccCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCccccCCCCCcEEEeccCCCcCCCcccC
Q 017559 123 NIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLS 202 (369)
Q Consensus 123 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 202 (369)
+..+|..++.++ |+.|.++. ++++.+|..++....|..++.+.|.+..+|..+..+.+|+.|.+..|....+|..+.
T Consensus 133 -lS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~ 209 (722)
T KOG0532|consen 133 -LSHLPDGLCDLP-LKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC 209 (722)
T ss_pred -hhcCChhhhcCc-ceeEEEec-CccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh
Confidence 445666666665 77777766 667788888888888888998888888888888888888888888888878887666
Q ss_pred CCCCCcEEeccCCCCccCCCCCCCCCCCCEEEcCCCCCCccchhh---ccCCCCCEeccccc
Q 017559 203 GLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSI---SQLSRLRWLYLVNC 261 (369)
Q Consensus 203 ~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~---~~~~~L~~L~l~~~ 261 (369)
.+ .|..|+++.|++..+|..+..+..|++|-|.+|-+..-|..+ +..-=.++|+..-|
T Consensus 210 ~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 210 SL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred CC-ceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 44 488888888888888888888888899888888887766544 22223466666666
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.03 E-value=5.2e-10 Score=103.27 Aligned_cols=195 Identities=31% Similarity=0.456 Sum_probs=141.1
Q ss_pred EEcCCccccccCcccCCCCCCCEEeCcCcccccccchhhccCC-cCcEEecCCCcCcccCchhhhccCccceeccccccc
Q 017559 45 LNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLK-SLRSLDLSYCINLESFPEILEKMELLEEINLEEASN 123 (369)
Q Consensus 45 L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 123 (369)
+....+.+..-...+..++.++.|++.++. ...++....... +|+.|+++++ ....++..++.+++|+.|++++|+
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~-i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~- 174 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNN-ITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFND- 174 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcc-cccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCch-
Confidence 455555542222224445678888888754 445555455553 8888888885 344555677888888888888554
Q ss_pred ccccchhhhcccCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCccccCCCCCcEEEeccCCCcCCCcccCC
Q 017559 124 IKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSG 203 (369)
Q Consensus 124 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 203 (369)
+..++......++|+.|++++ +.+..+|........|+++.+.+|.+...+..+....++..+.+.++....++..+..
T Consensus 175 l~~l~~~~~~~~~L~~L~ls~-N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~ 253 (394)
T COG4886 175 LSDLPKLLSNLSNLNNLDLSG-NKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGN 253 (394)
T ss_pred hhhhhhhhhhhhhhhheeccC-CccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhcc
Confidence 555555555778888888888 4466666555566779999998887666667777888888888888887766777888
Q ss_pred CCCCcEEeccCCCCccCCCCCCCCCCCCEEEcCCCCCCccc
Q 017559 204 LSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLP 244 (369)
Q Consensus 204 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 244 (369)
+++++.|++++|.+..++. ++...+++.|+++++.+...+
T Consensus 254 l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 254 LSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred ccccceecccccccccccc-ccccCccCEEeccCccccccc
Confidence 8889999999999998776 788889999999998777444
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.01 E-value=4.4e-10 Score=89.69 Aligned_cols=133 Identities=20% Similarity=0.152 Sum_probs=47.7
Q ss_pred CccCCCCcCCCCccEEecCCCCCccccCCc---cCCeeEEEcCCccccccCcccCCCCCCCEEeCcCcccccccchhh-c
Q 017559 9 LRCFPQNIHFISSIKIDCYKCVNLREFPRI---SGNVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSI-C 84 (369)
Q Consensus 9 l~~~p~~~~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~ 84 (369)
++.+|...+...+++|++.+|. +..+... ..+|+.|++++|.++.++. +..+++|++|++++|.... +...+ .
T Consensus 9 i~~~~~~~n~~~~~~L~L~~n~-I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~-l~~L~~L~~L~L~~N~I~~-i~~~l~~ 85 (175)
T PF14580_consen 9 IEQIAQYNNPVKLRELNLRGNQ-ISTIENLGATLDKLEVLDLSNNQITKLEG-LPGLPRLKTLDLSNNRISS-ISEGLDK 85 (175)
T ss_dssp ----------------------------S--TT-TT--EEE-TTS--S--TT-----TT--EEE--SS---S--CHHHHH
T ss_pred cccccccccccccccccccccc-cccccchhhhhcCCCEEECCCCCCccccC-ccChhhhhhcccCCCCCCc-cccchHH
Confidence 4456666677778999999988 6666543 3388999999999988764 7778899999999876543 43334 4
Q ss_pred cCCcCcEEecCCCcCccc-CchhhhccCccceeccccccccccc---chhhhcccCCCeEeecC
Q 017559 85 KLKSLRSLDLSYCINLES-FPEILEKMELLEEINLEEASNIKEL---PSSIENLEGLKQLKLTG 144 (369)
Q Consensus 85 ~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l~~ 144 (369)
.+++|++|++++|..... .-..+..+++|++|++.+|+....- ...+..+|+|+.||-..
T Consensus 86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 588999999988755432 2256678889999999887754421 22456778888887543
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.98 E-value=1.8e-11 Score=110.76 Aligned_cols=192 Identities=29% Similarity=0.378 Sum_probs=160.9
Q ss_pred CCcCcEEecCCCcCcccCchhhhccCccceecccccccccccchhhhcccCCCeEeecCCCCCCCCCcccCCCcchhhhc
Q 017559 86 LKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLH 165 (369)
Q Consensus 86 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 165 (369)
+..-...+++. +....+|..+..|..|+.+.++. +.+..+|..++++..|..++++.++ +..+|..+..++ |+.+-
T Consensus 74 ltdt~~aDlsr-NR~~elp~~~~~f~~Le~liLy~-n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSR-NRFSELPEEACAFVSLESLILYH-NCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhccc-cccccCchHHHHHHHHHHHHHHh-ccceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEE
Confidence 33444567777 45678899999999999998884 4567788889999999999999954 667777777777 89999
Q ss_pred cCcccCCCCCccccCCCCCcEEEeccCCCcCCCcccCCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEcCCCCCCccch
Q 017559 166 AGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPT 245 (369)
Q Consensus 166 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 245 (369)
+++|.++.+|+.++...+|..|+.+.|...++|..++++.+|+.|.+..|.+..+|..+..+ .|..||+++|++..+|.
T Consensus 150 ~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~iPv 228 (722)
T KOG0532|consen 150 VSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISYLPV 228 (722)
T ss_pred EecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceeecch
Confidence 99999999999999899999999999999999999999999999999999999999888744 69999999999999999
Q ss_pred hhccCCCCCEeccccccccccCCC------cCcccceecccCCc
Q 017559 246 SISQLSRLRWLYLVNCVKLQSLPE------LPLLLVMLGASDCK 283 (369)
Q Consensus 246 ~~~~~~~L~~L~l~~~~~l~~~~~------~~~~L~~L~l~~c~ 283 (369)
.+..++.|++|-|.+|+ +++=|. ...=+++|++..|.
T Consensus 229 ~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 229 DFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred hhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhcc
Confidence 99999999999999885 444221 11235788888884
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.95 E-value=5.8e-11 Score=99.51 Aligned_cols=123 Identities=28% Similarity=0.290 Sum_probs=57.6
Q ss_pred CCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCccccCCCCCcEEEeccCCCcCCCcccCCCCCCcEEeccCC
Q 017559 136 GLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDC 215 (369)
Q Consensus 136 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 215 (369)
.|+++++++ +.++.+.+.+.-.|.++.|++++|.+..+. .+..+++|+.|++++|....+..+-..+.++++|.+++|
T Consensus 285 ~LtelDLS~-N~I~~iDESvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N 362 (490)
T KOG1259|consen 285 ELTELDLSG-NLITQIDESVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN 362 (490)
T ss_pred hhhhccccc-cchhhhhhhhhhccceeEEeccccceeeeh-hhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh
Confidence 444555554 233444444444455555555555554442 244455555555555554444444344445555555555
Q ss_pred CCccCCCCCCCCCCCCEEEcCCCCCCccc--hhhccCCCCCEeccccc
Q 017559 216 EIMEIPPDIGCLSSLESLNLSGNNIESLP--TSISQLSRLRWLYLVNC 261 (369)
Q Consensus 216 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~~L~~L~l~~~ 261 (369)
.+.++. .++.+-+|..||+++|++..+. ..++.+|-|+++.+.+|
T Consensus 363 ~iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 363 KIETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGN 409 (490)
T ss_pred hHhhhh-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCC
Confidence 444331 2334445555555555554322 23444555555555544
No 37
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.94 E-value=4.7e-10 Score=95.96 Aligned_cols=150 Identities=20% Similarity=0.165 Sum_probs=88.2
Q ss_pred cccCCCeEeecCCCCCCCCCc----ccCCCcchhhhccCcccCCCC--------------CccccCCCCCcEEEeccCCC
Q 017559 133 NLEGLKQLKLTGCTKLGSLPE----SLGNLKSLERLHAGLLAIPQA--------------PSSIVDLNKLETLSLFECRG 194 (369)
Q Consensus 133 ~~~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~~~--------------~~~~~~~~~L~~L~l~~~~~ 194 (369)
.++.|+.++++.|......+. .+.++..|++|++.+|++... .....+.++|+.+..++|..
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 344555555555443332221 234455666666666655411 11234456788888877774
Q ss_pred cCCC-----cccCCCCCCcEEeccCCCCcc-----CCCCCCCCCCCCEEEcCCCCCC-----ccchhhccCCCCCEeccc
Q 017559 195 LVLP-----PLLSGLSSLKKLELGDCEIME-----IPPDIGCLSSLESLNLSGNNIE-----SLPTSISQLSRLRWLYLV 259 (369)
Q Consensus 195 ~~~~-----~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~l~-----~~~~~~~~~~~L~~L~l~ 259 (369)
..-+ ..+...+.|+.+.+..|.+.. +...+..+++|+.||+.+|.++ .+...+..+++|++|++.
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 3322 355666778888888777654 2234677888888888888766 333455667778888888
Q ss_pred ccccccc---------CCCcCcccceecccCCc
Q 017559 260 NCVKLQS---------LPELPLLLVMLGASDCK 283 (369)
Q Consensus 260 ~~~~l~~---------~~~~~~~L~~L~l~~c~ 283 (369)
+| .+++ +....++|+.+.+.+|.
T Consensus 250 dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 250 DC-LLENEGAIAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred cc-ccccccHHHHHHHHhccCCCCceeccCcch
Confidence 87 3332 22345667777766653
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.91 E-value=3.1e-10 Score=95.23 Aligned_cols=126 Identities=25% Similarity=0.187 Sum_probs=95.9
Q ss_pred cCCCcchhhhccCcccCCCCCccccCCCCCcEEEeccCCCcCCCcccCCCCCCcEEeccCCCCccCCCCCCCCCCCCEEE
Q 017559 155 LGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLN 234 (369)
Q Consensus 155 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 234 (369)
+..+..|+++++++|.++.+.+++.-.++++.|++++|....+.. +..+++|+.|++++|.+..+..|-..+-+.++|.
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence 344567889999999999888888888999999999998766655 6778889999999998888666656677888999
Q ss_pred cCCCCCCccchhhccCCCCCEeccccccccccCCC-----cCcccceecccCCc
Q 017559 235 LSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPE-----LPLLLVMLGASDCK 283 (369)
Q Consensus 235 l~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-----~~~~L~~L~l~~c~ 283 (369)
+++|.+..+. ++..+-+|..||+++| .+..+.+ ..|.|+.+.+.+.|
T Consensus 359 La~N~iE~LS-GL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 359 LAQNKIETLS-GLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhhhHhhhh-hhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCC
Confidence 9999887665 4667778889999888 3333221 23557777776654
No 39
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=1.5e-10 Score=96.98 Aligned_cols=172 Identities=19% Similarity=0.217 Sum_probs=107.2
Q ss_pred ccceeccccccccc--ccchhhhcccCCCeEeecCCCCCCCCCcccCCCcchhhhccCccc-CCCC--CccccCCCCCcE
Q 017559 112 LLEEINLEEASNIK--ELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLA-IPQA--PSSIVDLNKLET 186 (369)
Q Consensus 112 ~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~--~~~~~~~~~L~~ 186 (369)
.|+++|++ +..++ .+-..+..|.+|+.+.+.+...-..+...+.+-.+|+.++++.+. ++.. .-.+.+|+.|.+
T Consensus 186 Rlq~lDLS-~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLS-NSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcc-hhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 46677776 33332 223345566677777776655444444455566667777776653 3322 124567788888
Q ss_pred EEeccCCCcCC--Cccc-CCCCCCcEEeccCCCCcc----CCCCCCCCCCCCEEEcCCC-CCC-ccchhhccCCCCCEec
Q 017559 187 LSLFECRGLVL--PPLL-SGLSSLKKLELGDCEIME----IPPDIGCLSSLESLNLSGN-NIE-SLPTSISQLSRLRWLY 257 (369)
Q Consensus 187 L~l~~~~~~~~--~~~~-~~~~~L~~L~l~~~~~~~----~~~~~~~~~~L~~L~l~~~-~l~-~~~~~~~~~~~L~~L~ 257 (369)
|++++|.+..- ...+ .--++|+.|+++|+.-.- +......+|+|.+||+++| .++ +....+..++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 88888873211 1111 112578888888874321 2223567899999999997 555 5556778899999999
Q ss_pred cccccccccC--C--CcCcccceecccCCcc
Q 017559 258 LVNCVKLQSL--P--ELPLLLVMLGASDCKR 284 (369)
Q Consensus 258 l~~~~~l~~~--~--~~~~~L~~L~l~~c~~ 284 (369)
++.|..+..- - ...+++.+|++.+|-.
T Consensus 345 lsRCY~i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 345 LSRCYDIIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred hhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence 9999765421 1 2347899999988754
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=1.8e-10 Score=96.44 Aligned_cols=175 Identities=18% Similarity=0.143 Sum_probs=90.6
Q ss_pred CCCEEeCcCccccc-ccchhhccCCcCcEEecCCCcCcccCchhhhccCccceecccccccccccc--hhhhcccCCCeE
Q 017559 64 NLETLEMSFCNSLK-RLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELP--SSIENLEGLKQL 140 (369)
Q Consensus 64 ~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L 140 (369)
.|+++|++....+. .+-..++.|.+|+.|.+.+......+...+..-.+|+.|+++.|..++... -.+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 35555555533322 222334455555555555544444444445555555555555555544322 234455555555
Q ss_pred eecCCCCCCCCCcc-cC-CCcchhhhccCcccCC----CCCccccCCCCCcEEEeccCCCc--CCCcccCCCCCCcEEec
Q 017559 141 KLTGCTKLGSLPES-LG-NLKSLERLHAGLLAIP----QAPSSIVDLNKLETLSLFECRGL--VLPPLLSGLSSLKKLEL 212 (369)
Q Consensus 141 ~l~~~~~~~~~~~~-~~-~l~~L~~L~l~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l 212 (369)
+++.|......-.. +. --++|..|+++|+.-. .+.-....|++|.+||+++|..- .....+..++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 55555433221110 11 1134555555554311 22222345777888888777621 22234556777888888
Q ss_pred cCCCCcc--CCCCCCCCCCCCEEEcCCC
Q 017559 213 GDCEIME--IPPDIGCLSSLESLNLSGN 238 (369)
Q Consensus 213 ~~~~~~~--~~~~~~~~~~L~~L~l~~~ 238 (369)
+.|+... ....+...|+|.+|++.++
T Consensus 346 sRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 346 SRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhcCCChHHeeeeccCcceEEEEeccc
Confidence 8776543 2223566788888888886
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.61 E-value=1.7e-07 Score=91.10 Aligned_cols=106 Identities=25% Similarity=0.288 Sum_probs=62.7
Q ss_pred CCEEeCcCcccccccchhhccCCcCcEEecCCCcCcccCchhhhccCccceecccccccccccchhhhcccCCCeEeecC
Q 017559 65 LETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTG 144 (369)
Q Consensus 65 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 144 (369)
++.|+|++|.....+|..+..+++|+.|++++|.....+|..+..+++|+.|++++|...+.+|..+.++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 45566666555555666666666666666666655555666666666666666666555555666666666666666666
Q ss_pred CCCCCCCCcccCCC-cchhhhccCccc
Q 017559 145 CTKLGSLPESLGNL-KSLERLHAGLLA 170 (369)
Q Consensus 145 ~~~~~~~~~~~~~l-~~L~~L~l~~~~ 170 (369)
|...+.+|..+... .++..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 65555555544332 234445555543
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.48 E-value=2e-09 Score=100.39 Aligned_cols=125 Identities=26% Similarity=0.197 Sum_probs=95.1
Q ss_pred CCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCccccCCCCCcEEEeccCCCcCCCcccCCCCCCcEEeccCC
Q 017559 136 GLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDC 215 (369)
Q Consensus 136 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 215 (369)
.|...+++. +.+..+...+.-++.++.|++++|.+.++. .+..+++|++||+++|....+|..-..--+|..|.+++|
T Consensus 165 ~L~~a~fsy-N~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN 242 (1096)
T KOG1859|consen 165 KLATASFSY-NRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNN 242 (1096)
T ss_pred hHhhhhcch-hhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeeccc
Confidence 455555555 445556666777889999999999988774 778899999999999998888863333334999999999
Q ss_pred CCccCCCCCCCCCCCCEEEcCCCCCCccc--hhhccCCCCCEeccccccc
Q 017559 216 EIMEIPPDIGCLSSLESLNLSGNNIESLP--TSISQLSRLRWLYLVNCVK 263 (369)
Q Consensus 216 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~~L~~L~l~~~~~ 263 (369)
.++++.. +.++.+|+.||++.|-+.... ..++.+..|+.|.+.+|+.
T Consensus 243 ~l~tL~g-ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 243 ALTTLRG-IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred HHHhhhh-HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 8888643 678899999999999777443 3356777888899988863
No 43
>PLN03150 hypothetical protein; Provisional
Probab=98.47 E-value=3.7e-07 Score=88.70 Aligned_cols=106 Identities=25% Similarity=0.320 Sum_probs=92.6
Q ss_pred cCcEEecCCCcCcccCchhhhccCccceecccccccccccchhhhcccCCCeEeecCCCCCCCCCcccCCCcchhhhccC
Q 017559 88 SLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAG 167 (369)
Q Consensus 88 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 167 (369)
.++.|+++++.....+|..+..+++|++|++++|...+.+|..+..+++|+.|++++|...+.+|..++++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999988878899999999999999999888777889889999999999999988888899999999999999999
Q ss_pred cccCC-CCCccccC-CCCCcEEEeccCC
Q 017559 168 LLAIP-QAPSSIVD-LNKLETLSLFECR 193 (369)
Q Consensus 168 ~~~~~-~~~~~~~~-~~~L~~L~l~~~~ 193 (369)
+|.+. .+|..+.. ..++..+++.+|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCc
Confidence 99987 66766654 3466788888886
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.44 E-value=4.6e-08 Score=90.70 Aligned_cols=126 Identities=29% Similarity=0.326 Sum_probs=49.7
Q ss_pred CeeEEEcCCccccccCcccCCCCCCCEEeCcCcccccccchhhccCCcCcEEecCCCcCcccCchhhhccCccceecccc
Q 017559 41 NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEE 120 (369)
Q Consensus 41 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 120 (369)
.++.++++.+.+..+...+..+++|+.|++.+|... .+...+..+++|++|++++|.+... ..+..++.|+.|++.+
T Consensus 73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSG 149 (414)
T ss_pred hHHhhccchhhhhhhhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccc--cchhhccchhhheecc
Confidence 334444444444432223444445555555543322 1111133445555555555332221 1223334455555554
Q ss_pred cccccccchhhhcccCCCeEeecCCCCCCCCCcc-cCCCcchhhhccCcccCC
Q 017559 121 ASNIKELPSSIENLEGLKQLKLTGCTKLGSLPES-LGNLKSLERLHAGLLAIP 172 (369)
Q Consensus 121 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~ 172 (369)
|.... + ..+..++.|+.++++++..... ... ...+.+++.+.+.+|.+.
T Consensus 150 N~i~~-~-~~~~~l~~L~~l~l~~n~i~~i-e~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 150 NLISD-I-SGLESLKSLKLLDLSYNRIVDI-ENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred Ccchh-c-cCCccchhhhcccCCcchhhhh-hhhhhhhccchHHHhccCCchh
Confidence 43221 1 1122244445555544332211 110 234445555555555444
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.40 E-value=1.8e-07 Score=78.74 Aligned_cols=225 Identities=20% Similarity=0.170 Sum_probs=139.4
Q ss_pred CCCCEEeCcCccccc--ccchhhccCCcCcEEecCCCcCcc--cCchhhhccCccceecccccccccccchhhhcccCCC
Q 017559 63 PNLETLEMSFCNSLK--RLSTSICKLKSLRSLDLSYCINLE--SFPEILEKMELLEEINLEEASNIKELPSSIENLEGLK 138 (369)
Q Consensus 63 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 138 (369)
..+..+.+.+|..-. .+...-..+..++++++.+|.+.. .+...+.+++.|+.|+++.|.....+...-....+|+
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR 124 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence 344455566654322 222323557889999999975542 2445667899999999996554333321112455888
Q ss_pred eEeecCCCCCC-CCCcccCCCcchhhhccCcccCCCC---CccccC-CCCCcEEEeccCCCcCC---CcccCCCCCCcEE
Q 017559 139 QLKLTGCTKLG-SLPESLGNLKSLERLHAGLLAIPQA---PSSIVD-LNKLETLSLFECRGLVL---PPLLSGLSSLKKL 210 (369)
Q Consensus 139 ~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~---~~~~~~-~~~L~~L~l~~~~~~~~---~~~~~~~~~L~~L 210 (369)
.+-+.+...-. .....+..+|.+++++++.|....+ ...... .+.+++++...|..... -.....++++..+
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv 204 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV 204 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence 88888744321 2223456788888888888854411 111222 23566777666652211 1122346889999
Q ss_pred eccCCCCccC--CCCCCCCCCCCEEEcCCCCCCccc--hhhccCCCCCEeccccccccccCCCcCcccceecccCCcccc
Q 017559 211 ELGDCEIMEI--PPDIGCLSSLESLNLSGNNIESLP--TSISQLSRLRWLYLVNCVKLQSLPELPLLLVMLGASDCKRLQ 286 (369)
Q Consensus 211 ~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~c~~L~ 286 (369)
.+..|++.+. ......+|.+..|+++.+++.++. +.+.+++.|+.|.+++++.+..+.. ..=..|-+...++++
T Consensus 205 ~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~--~err~llIaRL~~v~ 282 (418)
T KOG2982|consen 205 FVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG--GERRFLLIARLTKVQ 282 (418)
T ss_pred eeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccC--CcceEEEEeeccceE
Confidence 9999988773 334566788888999999888554 5678999999999999988877654 222334444455555
Q ss_pred cCC
Q 017559 287 FLP 289 (369)
Q Consensus 287 ~l~ 289 (369)
.+.
T Consensus 283 vLN 285 (418)
T KOG2982|consen 283 VLN 285 (418)
T ss_pred Eec
Confidence 443
No 46
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.40 E-value=3.7e-07 Score=59.77 Aligned_cols=57 Identities=39% Similarity=0.477 Sum_probs=31.6
Q ss_pred CeeEEEcCCccccccCc-ccCCCCCCCEEeCcCcccccccchhhccCCcCcEEecCCC
Q 017559 41 NVVELNLMCTPIEEVPL-SIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYC 97 (369)
Q Consensus 41 ~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 97 (369)
+|++|+++.+.++.++. .|..+++|++|++++|......+..|.++++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 35555665555555553 4555666666666655443333345555666666666554
No 47
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.37 E-value=3e-07 Score=60.18 Aligned_cols=59 Identities=27% Similarity=0.331 Sum_probs=33.0
Q ss_pred CCCCEEeCcCcccccccchhhccCCcCcEEecCCCcCcccCchhhhccCccceeccccc
Q 017559 63 PNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEA 121 (369)
Q Consensus 63 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 121 (369)
|+|++|++++|.....-+..|.++++|++|++++|......+..+..+++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 35666666665333222245566666666666665544434455666666666666654
No 48
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.35 E-value=3.6e-06 Score=75.78 Aligned_cols=137 Identities=31% Similarity=0.432 Sum_probs=84.8
Q ss_pred hccCCcCcEEecCCCcCcccCchhhhccCccceecccccccccccchhhhcccCCCeEeecCCCCCCCCCcccCCCcchh
Q 017559 83 ICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLE 162 (369)
Q Consensus 83 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 162 (369)
+..+.+++.|++++| .+..+|. --.+|++|.+++|..+..+|..+ .++|+.|.+++|..+..+|. +|+
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccc
Confidence 445788999999987 5556662 23468888888887777776544 35888888888866666554 355
Q ss_pred hhccCcccCCCCCccccCCCCCcEEEeccCC-C--cCCCcccCCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEcCCC
Q 017559 163 RLHAGLLAIPQAPSSIVDLNKLETLSLFECR-G--LVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGN 238 (369)
Q Consensus 163 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~-~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 238 (369)
.|++..+....++. -.++|+.|.+.++. . ..++.. -.++|+.|.+++|....+|..+ ..+|+.|.++.+
T Consensus 116 ~L~L~~n~~~~L~~---LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~LP~~L--P~SLk~L~ls~n 187 (426)
T PRK15386 116 SLEIKGSATDSIKN---VPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIILPEKL--PESLQSITLHIE 187 (426)
T ss_pred eEEeCCCCCccccc---CcchHhheeccccccccccccccc--cCCcccEEEecCCCcccCcccc--cccCcEEEeccc
Confidence 55565544332211 12356677764332 1 111111 1257888888888766555433 358888888775
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.27 E-value=1.3e-07 Score=87.68 Aligned_cols=190 Identities=26% Similarity=0.276 Sum_probs=95.4
Q ss_pred CeeEEEcCCccccccCcccCCCCCCCEEeCcCcccccccchhhccCCcCcEEecCCCcCcccCchhhhccCccceecccc
Q 017559 41 NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEE 120 (369)
Q Consensus 41 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 120 (369)
+++.|++..+.+..+...+..+++|++|++++|... .+.. +..+..|+.|++++|.... + ..+..++.|+.+++++
T Consensus 96 ~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~-~i~~-l~~l~~L~~L~l~~N~i~~-~-~~~~~l~~L~~l~l~~ 171 (414)
T KOG0531|consen 96 SLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKIT-KLEG-LSTLTLLKELNLSGNLISD-I-SGLESLKSLKLLDLSY 171 (414)
T ss_pred ceeeeeccccchhhcccchhhhhcchheeccccccc-cccc-hhhccchhhheeccCcchh-c-cCCccchhhhcccCCc
Confidence 666666666666665544556667777777765433 2222 4445556677776654322 1 2233466666666665
Q ss_pred cccccccc-hhhhcccCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCccccCCC--CCcEEEeccCCCcCC
Q 017559 121 ASNIKELP-SSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLN--KLETLSLFECRGLVL 197 (369)
Q Consensus 121 ~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~ 197 (369)
|.....-+ . ...+.+++.+.+.++..... ..+..+..+..+++..+.+..+. .+.... +|+.+.+.++.....
T Consensus 172 n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~-~l~~~~~~~L~~l~l~~n~i~~~ 247 (414)
T KOG0531|consen 172 NRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLE-GLNELVMLHLRELYLSGNRISRS 247 (414)
T ss_pred chhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceecc-CcccchhHHHHHHhcccCccccc
Confidence 54433222 1 34556666666666432221 22333444444455555554331 111122 256666666665444
Q ss_pred CcccCCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEcCCCC
Q 017559 198 PPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNN 239 (369)
Q Consensus 198 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 239 (369)
+..+..+..+..+++.++.+..... +...+.+..+....+.
T Consensus 248 ~~~~~~~~~l~~l~~~~n~~~~~~~-~~~~~~~~~~~~~~~~ 288 (414)
T KOG0531|consen 248 PEGLENLKNLPVLDLSSNRISNLEG-LERLPKLSELWLNDNK 288 (414)
T ss_pred cccccccccccccchhhcccccccc-ccccchHHHhccCcch
Confidence 3444555566666666665554322 2223344444444443
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=2.1e-07 Score=78.44 Aligned_cols=178 Identities=17% Similarity=0.129 Sum_probs=89.5
Q ss_pred CeeEEEcCCcccccc---CcccCCCCCCCEEeCcCcccccccchhh-ccCCcCcEEecCCCcCcc-cCchhhhccCccce
Q 017559 41 NVVELNLMCTPIEEV---PLSIECLPNLETLEMSFCNSLKRLSTSI-CKLKSLRSLDLSYCINLE-SFPEILEKMELLEE 115 (369)
Q Consensus 41 ~L~~L~l~~~~~~~l---~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~ 115 (369)
.++.+++.+|.+++. -..+.++|+|++|+++.|.....+.. . ....+|+.|.+.+..... ........++.+++
T Consensus 72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~-lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS-LPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc-CcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 788888888888743 33467888888888888665433322 2 246788888887743322 23345567778888
Q ss_pred eccccccccc---ccchhhhcccCCCeEeecCCCCCC--CCCcccCCCcchhhhccCcccCCCC--CccccCCCCCcEEE
Q 017559 116 INLEEASNIK---ELPSSIENLEGLKQLKLTGCTKLG--SLPESLGNLKSLERLHAGLLAIPQA--PSSIVDLNKLETLS 188 (369)
Q Consensus 116 L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~ 188 (369)
|.+++|..-. +....-.--+.+++++..+|.... ....-....+++..+.+..+.+... .......+.+-.|+
T Consensus 151 lHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~Ln 230 (418)
T KOG2982|consen 151 LHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLN 230 (418)
T ss_pred hhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhh
Confidence 8887662111 000000011233444444432110 0001112234444455555544422 12233344444555
Q ss_pred eccCCCcCCC--cccCCCCCCcEEeccCCCCcc
Q 017559 189 LFECRGLVLP--PLLSGLSSLKKLELGDCEIME 219 (369)
Q Consensus 189 l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~ 219 (369)
++.+....+. +.+.+++.|..|.++++++.+
T Consensus 231 L~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 231 LGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred hcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 5555533332 245555666666666665544
No 51
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.18 E-value=1.2e-05 Score=72.55 Aligned_cols=136 Identities=24% Similarity=0.410 Sum_probs=91.1
Q ss_pred cCCCCCCCEEeCcCcccccccchhhccCCcCcEEecCCCcCcccCchhhhccCccceecccccccccccchhhhcccCCC
Q 017559 59 IECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLK 138 (369)
Q Consensus 59 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 138 (369)
+..+++++.|++++| .+..+|. + ..+|+.|.+++|.....+|..+ .++|++|++++|..+..+|. +|+
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccc
Confidence 344688999999998 5556663 2 3479999999988888888655 36899999998876666654 577
Q ss_pred eEeecCCC--CCCCCCcccCCCcchhhhccCcccCC---CCCccccCCCCCcEEEeccCCCcCCCcccCCCCCCcEEecc
Q 017559 139 QLKLTGCT--KLGSLPESLGNLKSLERLHAGLLAIP---QAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELG 213 (369)
Q Consensus 139 ~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 213 (369)
.|++..+. .+..+| ++|+.|.+.++... .++. .-+++|++|++++|....+|..+. .+|+.|.++
T Consensus 116 ~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls 185 (426)
T PRK15386 116 SLEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNIILPEKLP--ESLQSITLH 185 (426)
T ss_pred eEEeCCCCCcccccCc------chHhheecccccccccccccc--ccCCcccEEEecCCCcccCccccc--ccCcEEEec
Confidence 77775422 233333 35777776443211 1221 124789999999988666665443 589999987
Q ss_pred CCC
Q 017559 214 DCE 216 (369)
Q Consensus 214 ~~~ 216 (369)
.+.
T Consensus 186 ~n~ 188 (426)
T PRK15386 186 IEQ 188 (426)
T ss_pred ccc
Confidence 764
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.16 E-value=4.6e-08 Score=91.58 Aligned_cols=191 Identities=21% Similarity=0.195 Sum_probs=125.6
Q ss_pred CCcCcEEecCCCcCcccC-chhhhccCccceeccccccccc--ccc---hhhhc------ccCCCeEeecCCCCCCCCCc
Q 017559 86 LKSLRSLDLSYCINLESF-PEILEKMELLEEINLEEASNIK--ELP---SSIEN------LEGLKQLKLTGCTKLGSLPE 153 (369)
Q Consensus 86 l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~--~~~---~~~~~------~~~L~~L~l~~~~~~~~~~~ 153 (369)
+++++.|.+-....-... |..+..+.+|++|.+.+|.... .+- ..+.. +..|+++- ..| .+++..
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~-asc--ggd~~n 159 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVF-ASC--GGDISN 159 (1096)
T ss_pred HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHH-HHh--cccccc
Confidence 566666666554333222 5566678889999998876543 111 11110 11111111 111 111111
Q ss_pred ccCCCcchhhhccCcccCCCCCccccCCCCCcEEEeccCCCcCCCcccCCCCCCcEEeccCCCCccCCCCCCCCCCCCEE
Q 017559 154 SLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESL 233 (369)
Q Consensus 154 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L 233 (369)
-..+..|...++++|.+..+...+.-++.++.|++++|+..... .+..+++|++|+++.|.+..+|..-..-..|+.|
T Consensus 160 -s~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L 237 (1096)
T KOG1859|consen 160 -SPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLL 237 (1096)
T ss_pred -chhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheee
Confidence 11234688888888888888788888899999999999976665 6788999999999999998876543222349999
Q ss_pred EcCCCCCCccchhhccCCCCCEeccccccccccCCC-----cCcccceecccCCc
Q 017559 234 NLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSLPE-----LPLLLVMLGASDCK 283 (369)
Q Consensus 234 ~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-----~~~~L~~L~l~~c~ 283 (369)
.+.+|.++.+. .+..+++|+.||++.|- +....+ ...+|..|.+.|+|
T Consensus 238 ~lrnN~l~tL~-gie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 238 NLRNNALTTLR-GIENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred eecccHHHhhh-hHHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCc
Confidence 99999988776 47789999999999883 333322 12456777777765
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.16 E-value=8.6e-07 Score=73.84 Aligned_cols=193 Identities=22% Similarity=0.214 Sum_probs=85.6
Q ss_pred cCCCCCCCEEeCcCccccccc----chhhccCCcCcEEecCCCcCc---ccCc-------hhhhccCccceecccccccc
Q 017559 59 IECLPNLETLEMSFCNSLKRL----STSICKLKSLRSLDLSYCINL---ESFP-------EILEKMELLEEINLEEASNI 124 (369)
Q Consensus 59 ~~~l~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~---~~~~-------~~~~~l~~L~~L~l~~~~~~ 124 (369)
+..+..+..+++++|.+.+.- ...+.+-.+|+..+++.-... ..++ ..+-.|++|+..++++|...
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 344566777777776654432 233344556666666542111 0111 23345666666666665554
Q ss_pred cccchh----hhcccCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCccccCCCCCcEEEeccCCCcCCCc-
Q 017559 125 KELPSS----IENLEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPP- 199 (369)
Q Consensus 125 ~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~- 199 (369)
..+|+. +..-+.|++|.+++|.....-...++ +.|.+|- .| .-...-+.|+....+.|+....+.
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rig--kal~~la--~n------KKaa~kp~Le~vicgrNRlengs~~ 175 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIG--KALFHLA--YN------KKAADKPKLEVVICGRNRLENGSKE 175 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHH--HHHHHHH--HH------hhhccCCCceEEEeccchhccCcHH
Confidence 444332 23345566666655432111100000 0000000 00 011223456666655555332221
Q ss_pred ----ccCCCCCCcEEeccCCCCcc------CCCCCCCCCCCCEEEcCCCCCCcc-----chhhccCCCCCEeccccc
Q 017559 200 ----LLSGLSSLKKLELGDCEIME------IPPDIGCLSSLESLNLSGNNIESL-----PTSISQLSRLRWLYLVNC 261 (369)
Q Consensus 200 ----~~~~~~~L~~L~l~~~~~~~------~~~~~~~~~~L~~L~l~~~~l~~~-----~~~~~~~~~L~~L~l~~~ 261 (369)
.+..-..|+.+.+..|.|.. +...+.++.+|+.||+.+|.++.. ...+..-+.|+.|.+.+|
T Consensus 176 ~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 176 LSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred HHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence 12222455666666665543 111234556666666666655511 122233344566666655
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.07 E-value=4.4e-06 Score=50.21 Aligned_cols=39 Identities=38% Similarity=0.573 Sum_probs=23.4
Q ss_pred CCCCEEEcCCCCCCccchhhccCCCCCEeccccccccccC
Q 017559 228 SSLESLNLSGNNIESLPTSISQLSRLRWLYLVNCVKLQSL 267 (369)
Q Consensus 228 ~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~ 267 (369)
++|++|++++|+++.+|..++.+++|+.|++++| .++++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBE
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCC
Confidence 3566666666666666665666666666666666 34443
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.00 E-value=5.9e-06 Score=49.67 Aligned_cols=40 Identities=38% Similarity=0.737 Sum_probs=27.9
Q ss_pred CCCcEEeccCCCCccCCCCCCCCCCCCEEEcCCCCCCccc
Q 017559 205 SSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLP 244 (369)
Q Consensus 205 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 244 (369)
++|++|++++|.+.+++..++.+++|++|++++|.+++++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 3577777777777777665777778888888887777654
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.93 E-value=2.7e-06 Score=82.82 Aligned_cols=158 Identities=18% Similarity=0.266 Sum_probs=92.1
Q ss_pred CCcCcEEecCCCcCccc-Cc-hhhhccCccceeccccccccc-ccchhhhcccCCCeEeecCCCCCCCCCcccCCCcchh
Q 017559 86 LKSLRSLDLSYCINLES-FP-EILEKMELLEEINLEEASNIK-ELPSSIENLEGLKQLKLTGCTKLGSLPESLGNLKSLE 162 (369)
Q Consensus 86 l~~L~~L~l~~~~~~~~-~~-~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 162 (369)
-.+|++|++++...... .+ ....-+|.|+.|.+.+-.... ++.....++++|..|||++++ ++.+ .+++++++|+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQ 198 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHH
Confidence 35788888887544432 22 333458888888887533222 344455678888888888843 4444 4677888888
Q ss_pred hhccCcccCCCCC--ccccCCCCCcEEEeccCCCcCCCcccCCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEcCCCCC
Q 017559 163 RLHAGLLAIPQAP--SSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNI 240 (369)
Q Consensus 163 ~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l 240 (369)
.|.+.+-.+.... ..+.++++|+.||++.......+... .. ..+.-..+|+|+.||.+++.+
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii-------~q---------Ylec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKII-------EQ---------YLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHH-------HH---------HHHhcccCccccEEecCCcch
Confidence 8888776665332 34566777788877765532222100 00 001123366777787777766
Q ss_pred C--ccchhhccCCCCCEeccccc
Q 017559 241 E--SLPTSISQLSRLRWLYLVNC 261 (369)
Q Consensus 241 ~--~~~~~~~~~~~L~~L~l~~~ 261 (369)
. .+...+...|+|+.+.+.+|
T Consensus 263 ~~~~le~ll~sH~~L~~i~~~~~ 285 (699)
T KOG3665|consen 263 NEEILEELLNSHPNLQQIAALDC 285 (699)
T ss_pred hHHHHHHHHHhCccHhhhhhhhh
Confidence 5 22233355666666655443
No 57
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.84 E-value=4.5e-06 Score=79.21 Aligned_cols=108 Identities=30% Similarity=0.419 Sum_probs=49.3
Q ss_pred CeeEEEc-CCccccc--cCcccCCCCCCCEEeCcCc-cccccc----chhhccCCcCcEEecCCCcCccc--Cchhhhcc
Q 017559 41 NVVELNL-MCTPIEE--VPLSIECLPNLETLEMSFC-NSLKRL----STSICKLKSLRSLDLSYCINLES--FPEILEKM 110 (369)
Q Consensus 41 ~L~~L~l-~~~~~~~--l~~~~~~l~~L~~L~l~~~-~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l 110 (369)
.|+.+.+ .+..+.. +......++.|+.|++++| ...... ......+++|+.|+++++...++ +......|
T Consensus 189 ~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c 268 (482)
T KOG1947|consen 189 LLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRC 268 (482)
T ss_pred hhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhC
Confidence 4555555 2333332 2233445556666666542 111111 11223456666666666543322 11222335
Q ss_pred Cccceeccccccccc--ccchhhhcccCCCeEeecCCCCC
Q 017559 111 ELLEEINLEEASNIK--ELPSSIENLEGLKQLKLTGCTKL 148 (369)
Q Consensus 111 ~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~ 148 (369)
++|++|.+.+|..++ .+......++.|++|++++|..+
T Consensus 269 ~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 269 PNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred CCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 666666655554322 22333445566666666665554
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.83 E-value=2.1e-05 Score=76.75 Aligned_cols=150 Identities=23% Similarity=0.183 Sum_probs=94.3
Q ss_pred CCCCEEeCcCccccccc-chhh-ccCCcCcEEecCCCcCc-ccCchhhhccCccceecccccccccccchhhhcccCCCe
Q 017559 63 PNLETLEMSFCNSLKRL-STSI-CKLKSLRSLDLSYCINL-ESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLKQ 139 (369)
Q Consensus 63 ~~L~~L~l~~~~~~~~~-~~~~-~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 139 (369)
.+|+.|++++......- +..+ ..+|.|+.|.+++-... .++.....++++|..||++++ .++.+ ..+..+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHH
Confidence 57999999885443322 2222 44899999999883222 224566789999999999964 45544 56788999999
Q ss_pred EeecCCCCCCC-CCcccCCCcchhhhccCcccCCCCCc-------cccCCCCCcEEEeccCCCc-CC-CcccCCCCCCcE
Q 017559 140 LKLTGCTKLGS-LPESLGNLKSLERLHAGLLAIPQAPS-------SIVDLNKLETLSLFECRGL-VL-PPLLSGLSSLKK 209 (369)
Q Consensus 140 L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~-------~~~~~~~L~~L~l~~~~~~-~~-~~~~~~~~~L~~ 209 (369)
|.+.+-..... .-..+..+++|+.|+++.......+. .-..+++|+.||.++.... .+ ...+..-++|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 98876443321 11246789999999998876543321 1223678888887766521 11 122333455655
Q ss_pred EeccC
Q 017559 210 LELGD 214 (369)
Q Consensus 210 L~l~~ 214 (369)
+...+
T Consensus 280 i~~~~ 284 (699)
T KOG3665|consen 280 IAALD 284 (699)
T ss_pred hhhhh
Confidence 55443
No 59
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.70 E-value=2e-06 Score=81.57 Aligned_cols=205 Identities=24% Similarity=0.221 Sum_probs=116.5
Q ss_pred cccCCCeEeecCCCCCCC--CCcccCCCcchhhhccCcc-c-CCCC----CccccCCCCCcEEEeccCC-CcCC--Cccc
Q 017559 133 NLEGLKQLKLTGCTKLGS--LPESLGNLKSLERLHAGLL-A-IPQA----PSSIVDLNKLETLSLFECR-GLVL--PPLL 201 (369)
Q Consensus 133 ~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~-~-~~~~----~~~~~~~~~L~~L~l~~~~-~~~~--~~~~ 201 (369)
.++.|+.+.+.+|..+.. +......+++|+.++++++ . .... ......+++|+.++++++. .... ....
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 357777777777666554 2234566777777777663 1 1111 1233346778888888776 2211 1222
Q ss_pred CCCCCCcEEeccCCC-Ccc--CCCCCCCCCCCCEEEcCCCCC-C--ccchhhccCCCCCEecccccc---ccccCC----
Q 017559 202 SGLSSLKKLELGDCE-IME--IPPDIGCLSSLESLNLSGNNI-E--SLPTSISQLSRLRWLYLVNCV---KLQSLP---- 268 (369)
Q Consensus 202 ~~~~~L~~L~l~~~~-~~~--~~~~~~~~~~L~~L~l~~~~l-~--~~~~~~~~~~~L~~L~l~~~~---~l~~~~---- 268 (369)
..|++|+.|.+.+|. +++ +......++.|++|++++|.. + .+......+++++.+.+..+. .++...
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~ 345 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGL 345 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHh
Confidence 347788888877777 444 333356677888888888743 2 244445567777766554443 344321
Q ss_pred -CcC-cccceecccCCcccccCCCchh---hhH-HhhHHHHHhhhccccccccCCCC-CcEEEecCccCcChhhHHH
Q 017559 269 -ELP-LLLVMLGASDCKRLQFLPELTS---CLE-ELDASILQALSNRTGERLSKHMS-PVQLIFANCLKLNESIWAD 338 (369)
Q Consensus 269 -~~~-~~L~~L~l~~c~~L~~l~~~~~---~l~-~l~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~c~~l~~~~~~~ 338 (369)
... ..+..+.+.+|++++.+..... ... .+.+..|+.++ ........... ...+.+..|...++..+..
T Consensus 346 ~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~ 421 (482)
T KOG1947|consen 346 LTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELRLCRSDSLRVLNLSDCRLVTDKGLRC 421 (482)
T ss_pred hccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHHhccCCccceEecccCccccccchHH
Confidence 122 2567777777777766543321 111 45566676664 33333333333 5677778888777765433
No 60
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.60 E-value=1.7e-05 Score=66.30 Aligned_cols=177 Identities=20% Similarity=0.230 Sum_probs=102.5
Q ss_pred CCeeEEEcCCcccc-----ccCcccCCCCCCCEEeCcCcccc---cc-------cchhhccCCcCcEEecCCCcCcccCc
Q 017559 40 GNVVELNLMCTPIE-----EVPLSIECLPNLETLEMSFCNSL---KR-------LSTSICKLKSLRSLDLSYCINLESFP 104 (369)
Q Consensus 40 ~~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~---~~-------~~~~~~~l~~L~~L~l~~~~~~~~~~ 104 (369)
..++.+++++|.|. .+...+.+-.+|+..++++-... .. +.+.+-+||.|+..+++.|-.....|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 38999999999986 33344666788999998863211 11 22445679999999999986665554
Q ss_pred ----hhhhccCccceecccccccccccc-----hh---------hhcccCCCeEeecCCCCCCCCCc-----ccCCCcch
Q 017559 105 ----EILEKMELLEEINLEEASNIKELP-----SS---------IENLEGLKQLKLTGCTKLGSLPE-----SLGNLKSL 161 (369)
Q Consensus 105 ----~~~~~l~~L~~L~l~~~~~~~~~~-----~~---------~~~~~~L~~L~l~~~~~~~~~~~-----~~~~l~~L 161 (369)
+.+++-+.|.+|.+.+|. ++.+. .+ ..+-|.|+.+...+| .....+. .+..-.+|
T Consensus 110 e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN-Rlengs~~~~a~~l~sh~~l 187 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN-RLENGSKELSAALLESHENL 187 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc-hhccCcHHHHHHHHHhhcCc
Confidence 466788899999999654 33221 11 123456676666653 3333221 12233466
Q ss_pred hhhccCcccCCC--CC----ccccCCCCCcEEEeccCCCcC-----CCcccCCCCCCcEEeccCCCCc
Q 017559 162 ERLHAGLLAIPQ--AP----SSIVDLNKLETLSLFECRGLV-----LPPLLSGLSSLKKLELGDCEIM 218 (369)
Q Consensus 162 ~~L~l~~~~~~~--~~----~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~ 218 (369)
+++.+..|+|.. +. ..+..+.+|+.|++..|..+. +...+..++.|+.|.+.+|-++
T Consensus 188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 666666666551 11 123345566666666555221 1123344445555555555443
No 61
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.48 E-value=2.1e-06 Score=64.13 Aligned_cols=89 Identities=18% Similarity=0.160 Sum_probs=49.1
Q ss_pred CCCcchhhhccCcccCCCCCccccC-CCCCcEEEeccCCCcCCCcccCCCCCCcEEeccCCCCccCCCCCCCCCCCCEEE
Q 017559 156 GNLKSLERLHAGLLAIPQAPSSIVD-LNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLN 234 (369)
Q Consensus 156 ~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 234 (369)
.....|..+++++|.+.++|..+.. .+.++.+++++|....+|..+..++.|+.|+++.|.+...|..+..+.++-.|+
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence 3344455555666665555554432 345555666666555555555555566666666666555555554455555666
Q ss_pred cCCCCCCccc
Q 017559 235 LSGNNIESLP 244 (369)
Q Consensus 235 l~~~~l~~~~ 244 (369)
.-+|....++
T Consensus 130 s~~na~~eid 139 (177)
T KOG4579|consen 130 SPENARAEID 139 (177)
T ss_pred CCCCccccCc
Confidence 5555555444
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.39 E-value=9.2e-06 Score=60.81 Aligned_cols=87 Identities=17% Similarity=0.202 Sum_probs=49.8
Q ss_pred cCCCeEeecCCCCCCCCCccc-CCCcchhhhccCcccCCCCCccccCCCCCcEEEeccCCCcCCCcccCCCCCCcEEecc
Q 017559 135 EGLKQLKLTGCTKLGSLPESL-GNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELG 213 (369)
Q Consensus 135 ~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 213 (369)
..|...++++|. ...+|..+ .+.+.++.+++.+|.+..+|..+..++.|+.++++.|+....|..+..+.++..|+..
T Consensus 53 ~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 53 YELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred ceEEEEecccch-hhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCC
Confidence 344444555532 33333333 3344566666666666666666666777777777776655555544445666666666
Q ss_pred CCCCccCCC
Q 017559 214 DCEIMEIPP 222 (369)
Q Consensus 214 ~~~~~~~~~ 222 (369)
++...+++.
T Consensus 132 ~na~~eid~ 140 (177)
T KOG4579|consen 132 ENARAEIDV 140 (177)
T ss_pred CCccccCcH
Confidence 666555443
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.33 E-value=0.00043 Score=55.60 Aligned_cols=99 Identities=26% Similarity=0.276 Sum_probs=46.9
Q ss_pred chhhhccCcccCCCCCccccCCCCCcEEEeccCCCcCCCcccC-CCCCCcEEeccCCCCccCC--CCCCCCCCCCEEEcC
Q 017559 160 SLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLS-GLSSLKKLELGDCEIMEIP--PDIGCLSSLESLNLS 236 (369)
Q Consensus 160 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~ 236 (369)
+...++++.|.+..+ +.+..++.|.+|.+++|....+...+. -+++|..|.+++|.+.++. ..+..||.|++|.+-
T Consensus 43 ~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 344555555554433 234445555555555555444433222 2344555555555555422 124455555555555
Q ss_pred CCCCCccc----hhhccCCCCCEeccc
Q 017559 237 GNNIESLP----TSISQLSRLRWLYLV 259 (369)
Q Consensus 237 ~~~l~~~~----~~~~~~~~L~~L~l~ 259 (369)
+|.+++-. ..+..+|+|+.||+.
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehh
Confidence 55444221 123444555555544
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.31 E-value=0.00036 Score=56.01 Aligned_cols=78 Identities=27% Similarity=0.422 Sum_probs=35.5
Q ss_pred CCcEEEeccCCCcCCCcccCCCCCCcEEeccCCCCccCCCCC-CCCCCCCEEEcCCCCCCccc--hhhccCCCCCEeccc
Q 017559 183 KLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDI-GCLSSLESLNLSGNNIESLP--TSISQLSRLRWLYLV 259 (369)
Q Consensus 183 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~--~~~~~~~~L~~L~l~ 259 (369)
....+++++|....++. +..++.|.+|.+.+|.++.+...+ ..+++|+.|.+.+|++..+- ..+..||.|+.|.+-
T Consensus 43 ~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 34444555544333322 344455555555555555533322 22344555555555444222 233445555555555
Q ss_pred cc
Q 017559 260 NC 261 (369)
Q Consensus 260 ~~ 261 (369)
+|
T Consensus 122 ~N 123 (233)
T KOG1644|consen 122 GN 123 (233)
T ss_pred CC
Confidence 44
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.10 E-value=0.00037 Score=58.21 Aligned_cols=59 Identities=39% Similarity=0.538 Sum_probs=27.5
Q ss_pred CCCCcEEeccCC--CCcc-CCCCCCCCCCCCEEEcCCCCCCccc--hhhccCCCCCEecccccc
Q 017559 204 LSSLKKLELGDC--EIME-IPPDIGCLSSLESLNLSGNNIESLP--TSISQLSRLRWLYLVNCV 262 (369)
Q Consensus 204 ~~~L~~L~l~~~--~~~~-~~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~~L~~L~l~~~~ 262 (369)
+++|++|.++.| ++.. +......+|+|+++++++|++..+. ..+..+++|..|++.+|+
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCC
Confidence 445555555555 2222 2222333455555555555544221 223445555555555553
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.89 E-value=8e-05 Score=62.63 Aligned_cols=97 Identities=27% Similarity=0.332 Sum_probs=61.4
Q ss_pred CeeEEEcCCccccccCcccCCCCCCCEEeCcCcccccccchhhccCCcCcEEecCCCcCcccCc--hhhhccCccceecc
Q 017559 41 NVVELNLMCTPIEEVPLSIECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFP--EILEKMELLEEINL 118 (369)
Q Consensus 41 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l 118 (369)
+.++|+..++++.+|.. ...|+.|++|.|+.|.+. .+.+ +..|.+|++|+|..|.+ .++. +.+.++++|+.|++
T Consensus 20 ~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvNkIs-sL~p-l~rCtrLkElYLRkN~I-~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVNKIS-SLAP-LQRCTRLKELYLRKNCI-ESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHHHH-HHhcccceeEEeeccccc-cchh-HHHHHHHHHHHHHhccc-ccHHHHHHHhcCchhhhHhh
Confidence 55667777777766543 456777888888876543 3222 66678888888877533 3333 34567788888888
Q ss_pred cccccccccch-----hhhcccCCCeEe
Q 017559 119 EEASNIKELPS-----SIENLEGLKQLK 141 (369)
Q Consensus 119 ~~~~~~~~~~~-----~~~~~~~L~~L~ 141 (369)
..|...+..+. .+..+|+|+.|+
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 77766554322 345567777765
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.79 E-value=0.001 Score=55.67 Aligned_cols=80 Identities=23% Similarity=0.201 Sum_probs=35.7
Q ss_pred CeeEEEcCCccccccCcccCCCCCCCEEeCcCc--ccccccchhhccCCcCcEEecCCCcCcc-cCchhhhccCccceec
Q 017559 41 NVVELNLMCTPIEEVPLSIECLPNLETLEMSFC--NSLKRLSTSICKLKSLRSLDLSYCINLE-SFPEILEKMELLEEIN 117 (369)
Q Consensus 41 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~ 117 (369)
.|+.+++.+.+++.+.. +..+++|++|.++.| .....++.....+++|++|++++|.+.. .--.....+.+|..|+
T Consensus 44 ~le~ls~~n~gltt~~~-~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ld 122 (260)
T KOG2739|consen 44 ELELLSVINVGLTTLTN-FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLD 122 (260)
T ss_pred chhhhhhhccceeeccc-CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhh
Confidence 44444444444443322 334556666666655 2233333333445666666666543321 0011223444455555
Q ss_pred cccc
Q 017559 118 LEEA 121 (369)
Q Consensus 118 l~~~ 121 (369)
+.+|
T Consensus 123 l~n~ 126 (260)
T KOG2739|consen 123 LFNC 126 (260)
T ss_pred cccC
Confidence 5544
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.44 E-value=0.00013 Score=61.39 Aligned_cols=98 Identities=23% Similarity=0.261 Sum_probs=56.3
Q ss_pred ccCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCccccCCCCCcEEEeccCCCcCCCc--ccCCCCCCcEEe
Q 017559 134 LEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPP--LLSGLSSLKKLE 211 (369)
Q Consensus 134 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~ 211 (369)
+.+.+.|+.++|.. .++. ...+++.|+.|.++-|.|+.+ ..+..|++|++|.+..|.+..+.+ .+.++++|+.|.
T Consensus 18 l~~vkKLNcwg~~L-~DIs-ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGL-DDIS-ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCc-cHHH-HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 44566667666542 2221 245666777777777776655 345566777777777666544442 456666777777
Q ss_pred ccCCCCcc-CC-----CCCCCCCCCCEEE
Q 017559 212 LGDCEIME-IP-----PDIGCLSSLESLN 234 (369)
Q Consensus 212 l~~~~~~~-~~-----~~~~~~~~L~~L~ 234 (369)
|..|.-.+ .+ ..+..+|+|++||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 66665443 11 1234456666654
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.31 E-value=0.017 Score=43.79 Aligned_cols=36 Identities=14% Similarity=0.325 Sum_probs=13.2
Q ss_pred cCCCCCCcEEeccCCCCccCC-CCCCCCCCCCEEEcCC
Q 017559 201 LSGLSSLKKLELGDCEIMEIP-PDIGCLSSLESLNLSG 237 (369)
Q Consensus 201 ~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~ 237 (369)
+..+++++.+.+.+ .+..++ ..+..+++|+.+++..
T Consensus 54 F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 54 FSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPS 90 (129)
T ss_dssp TTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETT
T ss_pred eecccccccccccc-cccccccccccccccccccccCc
Confidence 34444455555543 222211 1233455555555544
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.29 E-value=0.0088 Score=45.45 Aligned_cols=82 Identities=16% Similarity=0.135 Sum_probs=29.6
Q ss_pred cCCCCCCCEEeCcCcccccccchhhccCCcCcEEecCCCcCcccCchhhhccCccceecccccccccccchhhhcccCCC
Q 017559 59 IECLPNLETLEMSFCNSLKRLSTSICKLKSLRSLDLSYCINLESFPEILEKMELLEEINLEEASNIKELPSSIENLEGLK 138 (369)
Q Consensus 59 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 138 (369)
|..+++|+.+.+.. .....-...|.++.+|+.+.+... ....-...+..+++++++.+.+ .........+..+++++
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 44555555555543 111111234455555666665542 2222223445555555555542 11111122344455555
Q ss_pred eEeec
Q 017559 139 QLKLT 143 (369)
Q Consensus 139 ~L~l~ 143 (369)
.+.+.
T Consensus 85 ~i~~~ 89 (129)
T PF13306_consen 85 NIDIP 89 (129)
T ss_dssp EEEET
T ss_pred ccccC
Confidence 55553
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.78 E-value=0.0043 Score=30.91 Aligned_cols=19 Identities=58% Similarity=0.933 Sum_probs=11.4
Q ss_pred CCCEEEcCCCCCCccchhh
Q 017559 229 SLESLNLSGNNIESLPTSI 247 (369)
Q Consensus 229 ~L~~L~l~~~~l~~~~~~~ 247 (369)
+|++|++++|.++.+|..+
T Consensus 1 ~L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp TESEEEETSSEESEEGTTT
T ss_pred CccEEECCCCcCEeCChhh
Confidence 3566666666666665544
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.05 E-value=0.017 Score=26.65 Aligned_cols=14 Identities=43% Similarity=0.681 Sum_probs=5.1
Q ss_pred CCCEEEcCCCCCCc
Q 017559 229 SLESLNLSGNNIES 242 (369)
Q Consensus 229 ~L~~L~l~~~~l~~ 242 (369)
+|++|++++|+++.
T Consensus 2 ~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 2 NLRTLDLSNNRLTS 15 (17)
T ss_dssp T-SEEEETSS--SS
T ss_pred ccCEEECCCCCCCC
Confidence 34444444444443
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.72 E-value=0.011 Score=47.71 Aligned_cols=32 Identities=25% Similarity=0.318 Sum_probs=13.5
Q ss_pred CcEEeccCCCCcc-CCCCCCCCCCCCEEEcCCC
Q 017559 207 LKKLELGDCEIME-IPPDIGCLSSLESLNLSGN 238 (369)
Q Consensus 207 L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~ 238 (369)
++.++-+++.+.. -...+..++.++.|.+.+|
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 4444444444433 1122344444444444444
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.56 E-value=0.024 Score=28.14 Aligned_cols=14 Identities=21% Similarity=0.368 Sum_probs=5.4
Q ss_pred eEEEcCCccccccC
Q 017559 43 VELNLMCTPIEEVP 56 (369)
Q Consensus 43 ~~L~l~~~~~~~l~ 56 (369)
++|++++|.++.+|
T Consensus 3 ~~Ldls~n~l~~ip 16 (22)
T PF00560_consen 3 EYLDLSGNNLTSIP 16 (22)
T ss_dssp SEEEETSSEESEEG
T ss_pred cEEECCCCcCEeCC
Confidence 33344333333333
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.07 E-value=0.026 Score=45.64 Aligned_cols=14 Identities=43% Similarity=0.823 Sum_probs=5.6
Q ss_pred ccCCcCcEEecCCC
Q 017559 84 CKLKSLRSLDLSYC 97 (369)
Q Consensus 84 ~~l~~L~~L~l~~~ 97 (369)
..++.++.|.+.+|
T Consensus 122 ~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 122 RDLRSIKSLSLANC 135 (221)
T ss_pred hccchhhhheeccc
Confidence 33344444444443
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.59 E-value=0.2 Score=25.83 Aligned_cols=20 Identities=40% Similarity=0.662 Sum_probs=14.1
Q ss_pred CCCCEEEcCCCCCCccchhh
Q 017559 228 SSLESLNLSGNNIESLPTSI 247 (369)
Q Consensus 228 ~~L~~L~l~~~~l~~~~~~~ 247 (369)
++|++|++++|.++.+|..+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 56777777777777776543
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.59 E-value=0.2 Score=25.83 Aligned_cols=20 Identities=40% Similarity=0.662 Sum_probs=14.1
Q ss_pred CCCCEEEcCCCCCCccchhh
Q 017559 228 SSLESLNLSGNNIESLPTSI 247 (369)
Q Consensus 228 ~~L~~L~l~~~~l~~~~~~~ 247 (369)
++|++|++++|.++.+|..+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 56777777777777776543
No 78
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=89.33 E-value=0.27 Score=25.44 Aligned_cols=17 Identities=29% Similarity=0.468 Sum_probs=11.8
Q ss_pred CCCCCEecccccccccc
Q 017559 250 LSRLRWLYLVNCVKLQS 266 (369)
Q Consensus 250 ~~~L~~L~l~~~~~l~~ 266 (369)
+++|++|++++|+.+++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 46777777777776664
No 79
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=88.84 E-value=0.0031 Score=59.12 Aligned_cols=177 Identities=27% Similarity=0.242 Sum_probs=78.9
Q ss_pred CCEEeCcCcccccc----cchhhccCCcCcEEecCCCcCcccCc----hhhhcc-Cccceeccccccccc----ccchhh
Q 017559 65 LETLEMSFCNSLKR----LSTSICKLKSLRSLDLSYCINLESFP----EILEKM-ELLEEINLEEASNIK----ELPSSI 131 (369)
Q Consensus 65 L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~l-~~L~~L~l~~~~~~~----~~~~~~ 131 (369)
+..+.+.+|..... +...+...+.|+.|++++|.....-. ..+... ..+++|++..|.... .+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 55556666554332 22344556667777777665442211 112222 345555555544332 122333
Q ss_pred hcccCCCeEeecCCCCCC----CCCcccC----CCcchhhhccCcccCCCC-----CccccCCCC-CcEEEeccCCCcCC
Q 017559 132 ENLEGLKQLKLTGCTKLG----SLPESLG----NLKSLERLHAGLLAIPQA-----PSSIVDLNK-LETLSLFECRGLVL 197 (369)
Q Consensus 132 ~~~~~L~~L~l~~~~~~~----~~~~~~~----~l~~L~~L~l~~~~~~~~-----~~~~~~~~~-L~~L~l~~~~~~~~ 197 (369)
...+.++.+++..|.... .++..+. ...++++|++.++.++.. ...+...+. ++.+++..|.....
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 345555566655544321 1111122 345566666666655411 112222233 44455555552211
Q ss_pred -----CcccCCC-CCCcEEeccCCCCcc-----CCCCCCCCCCCCEEEcCCCCCC
Q 017559 198 -----PPLLSGL-SSLKKLELGDCEIME-----IPPDIGCLSSLESLNLSGNNIE 241 (369)
Q Consensus 198 -----~~~~~~~-~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~l~ 241 (369)
...+... ..+++++++.|.+.+ +...+..++.++++.+++|.+.
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 1122222 345555666555544 1222334445555555555443
No 80
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=88.42 E-value=0.0034 Score=58.84 Aligned_cols=174 Identities=24% Similarity=0.285 Sum_probs=101.2
Q ss_pred CcEEecCCCcCccc----CchhhhccCccceecccccccccccc----hhhhcc-cCCCeEeecCCCCCCC----CCccc
Q 017559 89 LRSLDLSYCINLES----FPEILEKMELLEEINLEEASNIKELP----SSIENL-EGLKQLKLTGCTKLGS----LPESL 155 (369)
Q Consensus 89 L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~~-~~L~~L~l~~~~~~~~----~~~~~ 155 (369)
+..|.+.+|..... +...+.....|+.|++++|.....-. ..+... ..++.|.+..|..... +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 77778887765544 33455667888888888776553211 112222 3556666666554332 23345
Q ss_pred CCCcchhhhccCcccCCC-----CCccc----cCCCCCcEEEeccCCCcCC-----CcccCCCCC-CcEEeccCCCCcc-
Q 017559 156 GNLKSLERLHAGLLAIPQ-----APSSI----VDLNKLETLSLFECRGLVL-----PPLLSGLSS-LKKLELGDCEIME- 219 (369)
Q Consensus 156 ~~l~~L~~L~l~~~~~~~-----~~~~~----~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~-L~~L~l~~~~~~~- 219 (369)
.....++.+++..|.+.. ++..+ ....++++|.+.+|..+.. ...+...++ +..|++..|.+.+
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 567778888888877641 11222 2356777777777763311 112333344 5567777777654
Q ss_pred ----CCCCCCCC-CCCCEEEcCCCCCC-----ccchhhccCCCCCEecccccc
Q 017559 220 ----IPPDIGCL-SSLESLNLSGNNIE-----SLPTSISQLSRLRWLYLVNCV 262 (369)
Q Consensus 220 ----~~~~~~~~-~~L~~L~l~~~~l~-----~~~~~~~~~~~L~~L~l~~~~ 262 (369)
+...+... +.+++++++.|.++ .+...+..++.++.+.++.++
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~ 301 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNP 301 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCc
Confidence 12223333 56778888888776 334455667778888887774
No 81
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=79.99 E-value=1.4 Score=22.84 Aligned_cols=18 Identities=50% Similarity=0.761 Sum_probs=11.4
Q ss_pred CCCCEEEcCCCCCCccch
Q 017559 228 SSLESLNLSGNNIESLPT 245 (369)
Q Consensus 228 ~~L~~L~l~~~~l~~~~~ 245 (369)
++|+.|++++|.++.+|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 356666666666666654
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=79.18 E-value=0.033 Score=46.10 Aligned_cols=86 Identities=20% Similarity=0.123 Sum_probs=56.8
Q ss_pred ccCCCCCcEEEeccCCCcCCCcccCCCCCCcEEeccCCCCccCCCCCCCCCCCCEEEcCCCCCCccchhhccCCCCCEec
Q 017559 178 IVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELGDCEIMEIPPDIGCLSSLESLNLSGNNIESLPTSISQLSRLRWLY 257 (369)
Q Consensus 178 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~ 257 (369)
+......+.||++.+....+-..++.+..+..|+++.+.+.-+|..++....+..+++..|..+..|.+.+..+.++.++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNE 117 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhh
Confidence 34445666666666664444444455556666777777666666666666677777777777777777777777777777
Q ss_pred cccccc
Q 017559 258 LVNCVK 263 (369)
Q Consensus 258 l~~~~~ 263 (369)
..+++-
T Consensus 118 ~k~~~~ 123 (326)
T KOG0473|consen 118 QKKTEF 123 (326)
T ss_pred hccCcc
Confidence 777653
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=75.14 E-value=1.1 Score=22.46 Aligned_cols=8 Identities=63% Similarity=0.779 Sum_probs=2.3
Q ss_pred CCEEeCcC
Q 017559 65 LETLEMSF 72 (369)
Q Consensus 65 L~~L~l~~ 72 (369)
|++|++++
T Consensus 4 L~~L~l~~ 11 (24)
T PF13516_consen 4 LETLDLSN 11 (24)
T ss_dssp -SEEE-TS
T ss_pred CCEEEccC
Confidence 33333333
No 84
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=73.63 E-value=3.3 Score=21.43 Aligned_cols=16 Identities=44% Similarity=0.715 Sum_probs=9.9
Q ss_pred CCCCEEEcCCCCCCcc
Q 017559 228 SSLESLNLSGNNIESL 243 (369)
Q Consensus 228 ~~L~~L~l~~~~l~~~ 243 (369)
.+|+.|++++|+|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4566777777766533
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=72.19 E-value=0.2 Score=41.70 Aligned_cols=85 Identities=18% Similarity=0.113 Sum_probs=50.3
Q ss_pred ccCCCeEeecCCCCCCCCCcccCCCcchhhhccCcccCCCCCccccCCCCCcEEEeccCCCcCCCcccCCCCCCcEEecc
Q 017559 134 LEGLKQLKLTGCTKLGSLPESLGNLKSLERLHAGLLAIPQAPSSIVDLNKLETLSLFECRGLVLPPLLSGLSSLKKLELG 213 (369)
Q Consensus 134 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 213 (369)
+...+.|+++.+. .......++.++.+..++++.+.+...|..+.....++.++...|.....|..+...+.+++++..
T Consensus 41 ~kr~tvld~~s~r-~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 41 FKRVTVLDLSSNR-LVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQK 119 (326)
T ss_pred cceeeeehhhhhH-HHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhc
Confidence 3344445554422 223334455566666666666666666666666666666666666666666666666666666666
Q ss_pred CCCCcc
Q 017559 214 DCEIME 219 (369)
Q Consensus 214 ~~~~~~ 219 (369)
++.+..
T Consensus 120 ~~~~~~ 125 (326)
T KOG0473|consen 120 KTEFFR 125 (326)
T ss_pred cCcchH
Confidence 665543
No 86
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=61.04 E-value=8 Score=20.25 Aligned_cols=14 Identities=43% Similarity=0.634 Sum_probs=9.9
Q ss_pred CCCCEEEcCCCCCC
Q 017559 228 SSLESLNLSGNNIE 241 (369)
Q Consensus 228 ~~L~~L~l~~~~l~ 241 (369)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46777777777665
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=59.13 E-value=3.6 Score=38.90 Aligned_cols=65 Identities=28% Similarity=0.185 Sum_probs=28.5
Q ss_pred CCCCCCEEeCcCccccc--ccchhhccCCcCcEEecCCCcCcccCchhhh--ccCccceeccccccccc
Q 017559 61 CLPNLETLEMSFCNSLK--RLSTSICKLKSLRSLDLSYCINLESFPEILE--KMELLEEINLEEASNIK 125 (369)
Q Consensus 61 ~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~ 125 (369)
+.+.+..+++++|.... .+.......|+|+.|+|++|.........+. ....|++|.+.||...+
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 34555555565544221 2222223356666666666521111111111 22345666666665544
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=54.88 E-value=5.3 Score=37.80 Aligned_cols=34 Identities=29% Similarity=0.250 Sum_probs=15.6
Q ss_pred CCCcEEEeccCCCcCC---CcccCCCCCCcEEeccCC
Q 017559 182 NKLETLSLFECRGLVL---PPLLSGLSSLKKLELGDC 215 (369)
Q Consensus 182 ~~L~~L~l~~~~~~~~---~~~~~~~~~L~~L~l~~~ 215 (369)
+.+..+++++|....+ .......|+|+.|+|++|
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 4444555555552222 222233455555555555
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=31.65 E-value=2.8e+02 Score=26.41 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=17.7
Q ss_pred CcEEeccCCCCccC----CCCCCCCCCCCEEEcCCCCCC
Q 017559 207 LKKLELGDCEIMEI----PPDIGCLSSLESLNLSGNNIE 241 (369)
Q Consensus 207 L~~L~l~~~~~~~~----~~~~~~~~~L~~L~l~~~~l~ 241 (369)
++.+.++.|....- ......-+.+.+|++++|.+.
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mg 453 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMG 453 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcc
Confidence 44455555544331 112344456666677766554
Done!